LOCUS       DAJVUY010000001       102508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.001, whole genome shotgun sequence.
ACCESSION   DAJVUY010000001 DAJVUY010000000
VERSION     DAJVUY010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 102508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 102508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..102508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.001"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..610)
                     /gene="yeeE"
                     /locus_tag="OQQ72_000001"
                     /pseudo
     CDS             complement(1..610)
                     /gene="yeeE"
                     /locus_tag="OQQ72_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transport protein YeeE"
     gene            complement(789..2147)
                     /gene="plaP"
                     /locus_tag="OQQ72_000002"
     CDS             complement(789..2147)
                     /gene="plaP"
                     /locus_tag="OQQ72_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HCS2009882.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="OQQ72_000003"
     CDS             complement(2137..2199)
                     /gene="yoeI"
                     /locus_tag="OQQ72_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HCS2009883.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            complement(2414..3343)
                     /locus_tag="OQQ72_000004"
     CDS             complement(2414..3343)
                     /locus_tag="OQQ72_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2009884.1"
                     /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQHFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            complement(3389..4213)
                     /locus_tag="OQQ72_000005"
     CDS             complement(3389..4213)
                     /locus_tag="OQQ72_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS2009885.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="OQQ72_000006"
                     /pseudo
     CDS             complement(4296..4550)
                     /gene="yoeB"
                     /locus_tag="OQQ72_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
     gene            complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="OQQ72_000007"
     CDS             complement(4547..4798)
                     /gene="yefM"
                     /locus_tag="OQQ72_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HCS2009886.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            5081..5131
                     /gene="hisL"
                     /locus_tag="OQQ72_000008"
     CDS             5081..5131
                     /gene="hisL"
                     /locus_tag="OQQ72_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HCS2009887.1"
                     /translation="MTRVQFKHHHHHHHPD"
     misc_feature    5107..5230
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            5277..6176
                     /gene="hisG"
                     /locus_tag="OQQ72_000009"
     CDS             5277..6176
                     /gene="hisG"
                     /locus_tag="OQQ72_000009"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HCS2009888.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     gene            6182..7486
                     /gene="hisD"
                     /locus_tag="OQQ72_000010"
     CDS             6182..7486
                     /gene="hisD"
                     /locus_tag="OQQ72_000010"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HCS2009889.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARDLVDGITSAGSVFLGDWSLESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            7483..8553
                     /gene="hisC"
                     /locus_tag="OQQ72_000011"
     CDS             7483..8553
                     /gene="hisC"
                     /locus_tag="OQQ72_000011"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HCS2009890.1"
                     /translation="MSIVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA
                     ILYCPPTYGMYGVSAETIGVECRTVPTLDNWQLDLQGISDKLEGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     ECLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            8553..9620
                     /gene="hisB"
                     /locus_tag="OQQ72_000012"
     CDS             8553..9620
                     /gene="hisB"
                     /locus_tag="OQQ72_000012"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416526.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HCS2009891.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAIDRANSYVIGDRATDIQLAENMGITGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            9620..10210
                     /gene="hisH"
                     /locus_tag="OQQ72_000013"
     CDS             9620..10210
                     /gene="hisH"
                     /locus_tag="OQQ72_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HCS2009892.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            10210..10947
                     /gene="hisA"
                     /locus_tag="OQQ72_000014"
     CDS             10210..10947
                     /gene="hisA"
                     /locus_tag="OQQ72_000014"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HCS2009893.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYATQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG
                     STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            10929..11705
                     /gene="hisF"
                     /locus_tag="OQQ72_000015"
     CDS             10929..11705
                     /gene="hisF"
                     /locus_tag="OQQ72_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HCS2009894.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL
                     DWVQEVQKRGAGEVVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            11699..12310
                     /locus_tag="OQQ72_000016"
     CDS             11699..12310
                     /locus_tag="OQQ72_000016"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HCS2009895.1"
                     /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK
                     TIESGKVAFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLLLVNPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="OQQ72_000017"
     CDS             complement(12407..13384)
                     /gene="wzzB"
                     /locus_tag="OQQ72_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310855.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HCS2009896.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIAL
                     AIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGSAVPKVSDIQASLIGRYSTA
                     FSALAETLDNQEEAEKLTIEPTVKNQSLPLAVSYVGETPEGAQKQLAKYIQQVDDQVN
                     EELGKDLKDNIALRMKNLQDSLKTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQVQ
                     QTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIDNLDVDKLDIHA
                     YRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(13531..13623)
                     /locus_tag="OQQ72_000018"
                     /pseudo
     CDS             complement(13531..13623)
                     /locus_tag="OQQ72_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
     gene            13793..14797
                     /locus_tag="OQQ72_000019"
     CDS             13793..14797
                     /locus_tag="OQQ72_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010432020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HCS2009897.1"
                     /translation="MKFLVTGAAGFIGFYLSKRLLAAGHQVVGIDNLNDYYDVNLKQA
                     RLDLLKHDNFSFYKIDLADREKMAALFADERFERVINLAAQAGVRYSLENPNAYADAN
                     LIGFLNILEGCRHNNVQHLLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANEL
                     MAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFT
                     YIDDIAEAIIRLQDVIPEKNPQWAVETGSPATSSAPYRVYNIGNSSPVELMDYINALE
                     EALGIEANKNMMPLQPGDVLETSADTKALYDVIGFKPETSVKEGVKNFVEWYRNFYKV
                     "
     gene            complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="OQQ72_000020"
     CDS             complement(14863..16029)
                     /gene="ugd"
                     /locus_tag="OQQ72_000020"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCS2009898.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKRQSP
                     LVDKEIEEYLATKDLNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMIIKSTIPVGFTESIKERFGIENVIFSPEFLREGKALYDNLHPSRIVI
                     GEQSERAKRFAALLQEGAIKQDIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADSILARKPKVVGVYRLIMKNGSDNFRASSIQGIMKRIKAKGVPVIV
                     YEPAMKEDDFFRSRVVRDLDAFKQEADVIISNRMSADLADVADKVYTRDLFGND"
     gene            complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="OQQ72_000021"
     CDS             complement(16278..17684)
                     /gene="gndA"
                     /locus_tag="OQQ72_000021"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HCS2009899.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKEGVFHTEWLD"
     gene            complement(17812..18867)
                     /locus_tag="OQQ72_000022"
     CDS             complement(17812..18867)
                     /locus_tag="OQQ72_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HCS2009900.1"
                     /translation="MSNTAIIGTVGVPASYGGFETLVENLIETEKVNYIVYCSSKNYP
                     KKLSTYKNAKLVYIPLSANGISSVIYDAFSILHAIVFRKVNTLLILGVSGCFILPIIK
                     KISSVKIITNIDGVEWRRDKWGRFAKKFLKWSEKIAVKNSNIVISDNKEIANYVCSEY
                     MVNSQVIAYGGDHSLVFETKRCNDVENSESKYALALCRIEPENNVHVILESFSKVTKK
                     LKFIGNWGSSDYGRSLKKKYSKYNNIEIIDPIYDVEQLNIIRSGCEFYVHGHSAGGTN
                     PSLVEMMFFAKPIICFDCKYNRYTTFEQACYFRDLKDLIIKIESPKERTQGVKLKSLA
                     EKHYTWNRIREQYEQLL"
     gene            complement(18860..20152)
                     /gene="wzy"
                     /locus_tag="OQQ72_000023"
     CDS             complement(18860..20152)
                     /gene="wzy"
                     /locus_tag="OQQ72_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen polymerase"
                     /protein_id="HCS2009901.1"
                     /translation="MLAWAPKLLLLFFLLSGLIKAISLYININLNYVFIPLLILASLF
                     YLLINRTIKMKAQGACFIFFFSISAILFLVNNIVVNNVYTQLQLMLAVTIQYIFPIII
                     ICLAGSGKLKLDIFDSLINIITKLTFLSLLIFGLCVMYDSKMVEEFYSQLYNHGLIIN
                     PFQTSEEGITLRFSGIFSSGFILASYCCFAIIYYYFNKSVNRIKFAFLFVGFVIMVVL
                     TYNRNGMLAFAVTSLFIMIHTYLRRYYLTLANLYYVFLIGILFIAPSFILYFGGDIQN
                     SYSSIDYSAFTKLSTLFSRIDAWLQVLNINDVSRLLFGSGLVQGLGEDDMNFYVDNGY
                     LYLLHQSGLIALVLYIATWSYMFISLSKNLKKRRNHNFVSVDEINICLLLILVSFTLA
                     LLNNLFFEPVFLILVLMKCVTVNNKSSSIYEKNEQTYE"
     gene            complement(20156..21250)
                     /locus_tag="OQQ72_000024"
     CDS             complement(20156..21250)
                     /locus_tag="OQQ72_000024"
                     /inference="COORDINATES: protein motif:HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS2009902.1"
                     /translation="MKKIAILLPGPRREPVGGYKVLYQYGNYLASVGWQIDFIYLTNR
                     IVCYNRFSGLVGKIKAKLFSLLKFYKWFDFTSSNINHYVIKSLKKRDIENFNIVICSS
                     VETFIYANSSCRVNHKKLVYFVQDYENWNIPENILNYTLSHKDVDYITISDDLVKKIT
                     KMGGDVSLTLYNGINKNDFFVNIPWNERDRASFLFLYHPSERKGCDLLLRAIQKIHEV
                     DSSIKFSCFSAYTKPENFPSFIHYVYQPTVKQLNNLYNENRYFICSSIYEGFGLTAAE
                     ASFSGAIVVTTRNGGVEQFIKNEVTGFVLKERTLNSFMVAIMKLSQKDEELNLFAIES
                     SKKVRIQLDLDINFKKIDSYFKARYNNKRN"
     gene            complement(21251..22480)
                     /gene="wzx"
                     /locus_tag="OQQ72_000025"
     CDS             complement(21251..22480)
                     /gene="wzx"
                     /locus_tag="OQQ72_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060634343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O53 family O-antigen flippase"
                     /protein_id="HCS2009903.1"
                     /translation="MVKKIVNQFIYQFGNYILPFLIIPFLINKLSIAVYKDFVVIQSL
                     VLFFAVLINYGLDLFGVRYISNNVKHLRKCKSFLYISILSRLCIFIFCSFFLLVSLMA
                     LTKPDLLYWLLCFFWMLSFVFQSNWYLQGCGDFKLITFYGLLPKLIVYPFVFILVNND
                     NDAWVYLFLCAIANYASNILMMIHIRRKLNVVAFKRTNLLRNVWIFLVKGWYIFLSQA
                     SVTLISYANIFFLPLVLEPKSFVVFSTAERIVKVLSITTTPILNVIFPHISSLIENNK
                     QRVFIMISRISLFSLIVFLLCYTLYVFIGYYLIQLIFPTISQELYSVLLLLLFNVFFV
                     FQNNLFGTQIGLNYGKDKSFTKIIAINGILNIIAMPVFSKLYHLHGTILTSLCIQLSI
                     LICMYMLAKKCGYKFKV"
     gene            complement(22461..23573)
                     /locus_tag="OQQ72_000026"
     CDS             complement(22461..23573)
                     /locus_tag="OQQ72_000026"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HCS2009904.1"
                     /translation="MKFIIIGYRDAYFWNEYGTSVRDLQIAEILSRKYHVTFINRPVS
                     IYERLKNKKKAKSEYKAYSNRITFIDHTSYDLIGPLFGRIWTKYCYKKILNRISSLFT
                     DDSIIIDFTPIAELEFKNNKRITYWYDLIDNFSIHNRFSEKEKKAVRDKYAYVDENAD
                     IITAVSDKAIKNFLNPNKYVMPNGVYLENQNHECFIDGTPNKVYQLGFVGFVTDKLDI
                     DFLNKLSKKFSIIIWGKFFDDSIRDKLNENIKIAGAFKYSDLPSIMKSFKVGLLPYLP
                     EKSHDESPLKMYEYFKYGIPCLSSMNFEIKSRWFVNYLEYSKRDLLYEKINELIVSNN
                     SESIKASIQKEWLFEIKVNKIIEDIIRRKECGKKNS"
     gene            complement(23570..24412)
                     /locus_tag="OQQ72_000027"
     CDS             complement(23570..24412)
                     /locus_tag="OQQ72_000027"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2009905.1"
                     /translation="MENTNYYKLAILIVLYGKEVEQCETFTHIDRVLKKNRMSKDDII
                     LCLWNNGPREIAFNLTTDYYTLKVCQTINNESLSYIYNLFINEVESEKYILLDHDSIL
                     KYDYVLECLNSTSDCIIPNIIVGNNIQSPKTYSIQSFNKGNTVLAIGSGICISKKLCE
                     KLRQVFGDVFDSRFYFYGVDSTFFLRLNKIGESEFIKISECVVLHSLSRLENEAIKVK
                     QFRIKERSYDQGLTLRYYFCKFTFFTVAKKLLAKLIFNKSDISLIYFAKAYFSGKHYK
                     SGKS"
     gene            complement(24399..24968)
                     /gene="rfbC"
                     /locus_tag="OQQ72_000028"
     CDS             complement(24399..24968)
                     /gene="rfbC"
                     /locus_tag="OQQ72_000028"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HCS2009906.1"
                     /translation="MNVIKTEISDVLIFEPKVFGDERGFFFESFNQKVFEEAVGRKVE
                     FVQDNHSKSSKGVLRGLHYQLEPYAQGKLVRCAVGEVFDVAVDIRKSSPTFGKWVGVN
                     LSAENKRQLWIPEGLAHGFLVLSETAEFLYKTTNYYHPESDRGIIWDDPDIDVKWPLS
                     IHKPILSIKDEKQKMFKEMIALEKWNGEY"
     gene            complement(24973..25851)
                     /gene="rfbA"
                     /locus_tag="OQQ72_000029"
     CDS             complement(24973..25851)
                     /gene="rfbA"
                     /locus_tag="OQQ72_000029"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS2009907.1"
                     /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL
                     MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPTPDGLAQAFIIGEEFIGG
                     DDCALVLGDNIFYGHDLPKLMDVAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISL
                     EEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSSRGELEITDINRIYMEQGRLSVAMM
                     GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAYRKGFIAAEQVKVLAEPL
                     KKNAYGQYLLKMIKGY"
     gene            complement(25909..26808)
                     /gene="rfbD"
                     /locus_tag="OQQ72_000030"
     CDS             complement(25909..26808)
                     /gene="rfbD"
                     /locus_tag="OQQ72_000030"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HCS2009908.1"
                     /translation="MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNSE
                     GVAETVKKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVIHY
                     STDYVFPGTGEIPWQEADATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN
                     NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAS
                     GTTTWHDYAALVFEEARKAGIPLALNKLNAVPTTAYPTPARRPHNSRLDTEKFQQNFA
                     LVLPDWQIGVKRMLNELFTTTAI"
     gene            complement(26808..27893)
                     /gene="rfbB"
                     /locus_tag="OQQ72_000031"
     CDS             complement(26808..27893)
                     /gene="rfbB"
                     /locus_tag="OQQ72_000031"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS2009909.1"
                     /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA
                     DVSDSERYVFEHADICDAAVMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV
                     GTYVLLEAARNYWSALDSDKKNSFRLHHISTDEVYGDLPHPDEVNNTEELPLFTETTA
                     YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG
                     KALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDL
                     LDEIVPKEKSYREQITYIADRPGHDRRYAIDAEKIGRELGWKPQETFESGIRKTVEWY
                     LSNTKWVDNVKSGAYQSWIEENYEGRQ"
     gene            complement(28266..29159)
                     /gene="galF"
                     /locus_tag="OQQ72_000032"
     CDS             complement(28266..29159)
                     /gene="galF"
                     /locus_tag="OQQ72_000032"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HCS2009910.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELEHTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            complement(29334..30728)
                     /gene="wcaM"
                     /locus_tag="OQQ72_000033"
     CDS             complement(29334..30728)
                     /gene="wcaM"
                     /locus_tag="OQQ72_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HCS2009911.1"
                     /translation="MPFKKISRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD
                     WIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGS
                     QVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELYNKPQHLFMRNINV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNEKGQSSVDIDRVNHHIV
                     NVEKINFRLPERRE"
     gene            complement(30739..31959)
                     /gene="wcaL"
                     /locus_tag="OQQ72_000034"
     CDS             complement(30739..31959)
                     /gene="wcaL"
                     /locus_tag="OQQ72_000034"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HCS2009912.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTSWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREV
                     LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLNTDELAPVVKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            complement(31956..33236)
                     /gene="wcaK"
                     /locus_tag="OQQ72_000035"
     CDS             complement(31956..33236)
                     /gene="wcaK"
                     /locus_tag="OQQ72_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HCS2009913.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDF
                     TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT
                     RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ
                     LPALNARLSEAVSRERQTGMQMVQSVLERIGEVK"
     gene            complement(33608..35086)
                     /gene="wzxC"
                     /locus_tag="OQQ72_000036"
     CDS             complement(33608..35086)
                     /gene="wzxC"
                     /locus_tag="OQQ72_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid undecaprenyl disphosphate flippase
                     WzxC"
                     /protein_id="HCS2009914.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGLVVCVAVFLLSDLI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWPLAMIAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLVSVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCIVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYVLGIVLKGQLALGMLLG
                     VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
     gene            complement(35088..36467)
                     /gene="wcaJ"
                     /locus_tag="OQQ72_000037"
     CDS             complement(35088..36467)
                     /gene="wcaJ"
                     /locus_tag="OQQ72_000037"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCS2009915.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRN
                     QPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKL
                     VHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVL
                     ATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVV
                     TQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEG
                     YMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVF
                     KGFVNKAAY"
     gene            complement(36522..37892)
                     /gene="cpsG"
                     /locus_tag="OQQ72_000038"
                     /gene_synonym="manB"
     CDS             complement(36522..37892)
                     /gene="cpsG"
                     /locus_tag="OQQ72_000038"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS2009916.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKTLGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTIDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELLCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL
                     LTLLNE"
     gene            complement(38085..39521)
                     /gene="cpsB"
                     /locus_tag="OQQ72_000039"
     CDS             complement(38085..39521)
                     /gene="cpsB"
                     /locus_tag="OQQ72_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS2009917.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA
                     TRHSPESDPLMLVLAADHVIADEDAFRAAVRNAIPYAEAGKLVTFGIVPDLPEIGYGY
                     IRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK
                     KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLPCPEESVDYAVMERTADAVVVPMDAG
                     WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK
                     DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV
                     KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI
                     PLDLIEVRSGSYLEEDDVVRFADRYGRV"
     gene            complement(39524..40747)
                     /gene="wcaI"
                     /locus_tag="OQQ72_000040"
     CDS             complement(39524..40747)
                     /gene="wcaI"
                     /locus_tag="OQQ72_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HCS2009918.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY
                     PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADVDV
                     DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            complement(40744..41223)
                     /gene="gmm"
                     /locus_tag="OQQ72_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
     CDS             complement(40744..41223)
                     /gene="gmm"
                     /locus_tag="OQQ72_000041"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HCS2009919.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDEMLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVAEEDLLLPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL"
     gene            complement(41226..42191)
                     /gene="fcl"
                     /locus_tag="OQQ72_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             complement(41226..42191)
                     /gene="fcl"
                     /locus_tag="OQQ72_000042"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HCS2009920.1"
                     /translation="MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASESIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAGSELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG"
     gene            complement(42194..43315)
                     /gene="gmd"
                     /locus_tag="OQQ72_000043"
     CDS             complement(42194..43315)
                     /gene="gmd"
                     /locus_tag="OQQ72_000043"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HCS2009921.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            complement(43341..43889)
                     /gene="wcaF"
                     /locus_tag="OQQ72_000044"
     CDS             complement(43341..43889)
                     /gene="wcaF"
                     /locus_tag="OQQ72_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HCS2009922.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS
                     LPANVVCRGNPAVVIRERVETE"
     gene            complement(43905..44651)
                     /gene="wcaE"
                     /locus_tag="OQQ72_000045"
     CDS             complement(43905..44651)
                     /gene="wcaE"
                     /locus_tag="OQQ72_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HCS2009923.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSN
                     DGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANF
                     VRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKV"
     gene            complement(44662..45879)
                     /gene="wcaD"
                     /locus_tag="OQQ72_000046"
     CDS             complement(44662..45879)
                     /gene="wcaD"
                     /locus_tag="OQQ72_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HCS2009924.1"
                     /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNHNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            complement(45854..47071)
                     /gene="wcaC"
                     /locus_tag="OQQ72_000047"
     CDS             complement(45854..47071)
                     /gene="wcaC"
                     /locus_tag="OQQ72_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HCS2009925.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIVLFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNFYQNL"
     gene            complement(47068..47556)
                     /gene="wcaB"
                     /locus_tag="OQQ72_000048"
     CDS             complement(47068..47556)
                     /gene="wcaB"
                     /locus_tag="OQQ72_000048"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HCS2009926.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            complement(47559..48398)
                     /gene="wcaA"
                     /locus_tag="OQQ72_000049"
     CDS             complement(47559..48398)
                     /gene="wcaA"
                     /locus_tag="OQQ72_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HCS2009927.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     TSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            complement(48576..50738)
                     /gene="wzc"
                     /locus_tag="OQQ72_000050"
                     /pseudo
     CDS             complement(48576..50738)
                     /gene="wzc"
                     /locus_tag="OQQ72_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
     gene            complement(50741..51184)
                     /gene="wzb"
                     /locus_tag="OQQ72_000051"
     CDS             complement(50741..51184)
                     /gene="wzb"
                     /locus_tag="OQQ72_000051"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HCS2009928.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSWETFAAVYTLLERSARQWAQALNAEQV"
     gene            complement(51190..52329)
                     /gene="wza"
                     /locus_tag="OQQ72_000052"
     CDS             complement(51190..52329)
                     /gene="wza"
                     /locus_tag="OQQ72_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein Wza"
                     /protein_id="HCS2009929.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKTYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQVLMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            52638..52787
                     /locus_tag="OQQ72_000053"
     CDS             52638..52787
                     /locus_tag="OQQ72_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2009930.1"
                     /translation="MVIEYWLSNNAGGSVTANGIAGKVTIRQLAIFKNYIKCHSIWFL
                     GVSLG"
     gene            52988..54571
                     /locus_tag="OQQ72_000054"
     CDS             52988..54571
                     /locus_tag="OQQ72_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310895.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS2009931.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEDEIRQLLERNQHT
                     RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLHKDGELEYEV"
     gene            complement(54845..56698)
                     /gene="asmA"
                     /locus_tag="OQQ72_000055"
     CDS             complement(54845..56698)
                     /gene="asmA"
                     /locus_tag="OQQ72_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HCS2009932.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRNYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEVVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIHGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALSGAGTLNLAEQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(56720..57301)
                     /gene="dcd"
                     /locus_tag="OQQ72_000056"
     CDS             complement(56720..57301)
                     /gene="dcd"
                     /locus_tag="OQQ72_000056"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004942378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HCS2009933.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            complement(57393..58034)
                     /gene="udk"
                     /locus_tag="OQQ72_000057"
     CDS             complement(57393..58034)
                     /gene="udk"
                     /locus_tag="OQQ72_000057"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002211872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HCS2009934.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHNLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            58352..61649
                     /locus_tag="OQQ72_000058"
                     /pseudo
     CDS             58352..61649
                     /locus_tag="OQQ72_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(61688..62545)
                     /gene="alkA"
                     /locus_tag="OQQ72_000059"
     CDS             complement(61688..62545)
                     /gene="alkA"
                     /locus_tag="OQQ72_000059"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HCS2009935.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAAR
                     PGLRLPGCIDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPGIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDGTDEL"
     gene            62679..64031
                     /gene="yegD"
                     /locus_tag="OQQ72_000060"
     CDS             62679..64031
                     /gene="yegD"
                     /locus_tag="OQQ72_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS2009936.1"
                     /translation="MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINF
                     QGLGGDEANAQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLS
                     YRLVRSAEESKIALSNAAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(64043..65965)
                     /gene="yegI"
                     /locus_tag="OQQ72_000061"
     CDS             complement(64043..65965)
                     /gene="yegI"
                     /locus_tag="OQQ72_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HCS2009937.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDIEEFVDSVAKIYHTP
                     PPASKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINVNGTLHLCEVGVSHFTPPELQTLSSFVGFERTENHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCPVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FVDLGEEVITTSGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLSAIWIIGSLTSKAYKAEIQQRREAFNRA
                     KMDYEHLVSQIQQLGGLEGFIAKRAMLEKMKDEILGLPEEEKRALAALYDTARERQKQ
                     KFLEGFFASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWKASC
                     DRRFVFRPNEAVTPADRQAVMAAKRHRLESALTVGATELQRFRLYAPARTMPLMEPLR
                     QAAEKLAQAQADLSRC"
     gene            complement(65962..66723)
                     /gene="pphC"
                     /locus_tag="OQQ72_000062"
     CDS             complement(65962..66723)
                     /gene="pphC"
                     /locus_tag="OQQ72_000062"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase PphC"
                     /protein_id="HCS2009938.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVVWLNDQQPLLVMFL
                     ADGAGSVSQGGEGATLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLTPMVGEYANMTHFI
                     TDEDAVSRLETFTSTGRAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLASVTQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            complement(66720..67379)
                     /locus_tag="OQQ72_000063"
     CDS             complement(66720..67379)
                     /locus_tag="OQQ72_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS2009939.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMSGRPINELNAGL
                     VTFRDELLADPLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            complement(67600..67659)
                     /gene="ibsA"
                     /locus_tag="OQQ72_000064"
     CDS             complement(67600..67659)
                     /gene="ibsA"
                     /locus_tag="OQQ72_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HCS2009940.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            complement(67932..67988)
                     /locus_tag="OQQ72_000065"
     CDS             complement(67932..67988)
                     /locus_tag="OQQ72_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS2009941.1"
                     /translation="MMKLLIIVVLLVISFPAY"
     gene            complement(68260..68316)
                     /locus_tag="OQQ72_000066"
     CDS             complement(68260..68316)
                     /locus_tag="OQQ72_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS2009942.1"
                     /translation="MMKLLIIVVLLVISWPAY"
     gene            68595..69842
                     /gene="mdtA"
                     /locus_tag="OQQ72_000067"
     CDS             68595..69842
                     /gene="mdtA"
                     /locus_tag="OQQ72_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416578.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HCS2009943.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTIIAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQTQGQLAKDKATLANARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGMIKVKARFNNQNDVLFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            69842..72964
                     /gene="mdtB"
                     /locus_tag="OQQ72_000068"
     CDS             69842..72964
                     /gene="mdtB"
                     /locus_tag="OQQ72_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HCS2009944.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTT
                     NIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLIFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYSAFGQRLISTIYTQANQYRVVLEHNTEITPGLAALDTIRLTSSDGGVVPLSSIAKV
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGST
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFARHEEEA"
     gene            72965..76042
                     /gene="mdtC"
                     /locus_tag="OQQ72_000069"
     CDS             72965..76042
                     /gene="mdtC"
                     /locus_tag="OQQ72_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HCS2009945.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGKLYDFAST
                     QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            76043..77459
                     /locus_tag="OQQ72_000070"
                     /pseudo
     CDS             76043..77459
                     /locus_tag="OQQ72_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            77456..78859
                     /gene="baeS"
                     /locus_tag="OQQ72_000071"
     CDS             77456..78859
                     /gene="baeS"
                     /locus_tag="OQQ72_000071"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HCS2009946.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFAD
                     SAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            78856..79578
                     /gene="baeR"
                     /locus_tag="OQQ72_000072"
     CDS             78856..79578
                     /gene="baeR"
                     /locus_tag="OQQ72_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HCS2009947.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            79769..80101
                     /locus_tag="OQQ72_000073"
     CDS             79769..80101
                     /locus_tag="OQQ72_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HCS2009948.1"
                     /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIA
                     SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT
                     SQTVKDNT"
     gene            80224..81624
                     /locus_tag="OQQ72_000074"
     CDS             80224..81624
                     /locus_tag="OQQ72_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000911981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HCS2009949.1"
                     /translation="MLKGLRTLFSRRVLFNVEMNNSVDCELLLIQQQLQALIAEPGNY
                     LAHDCDLNDTLVLCQLTHHHNGYIREKAVQYLGHKEDVAAIEELLLAANDWVKEVRLA
                     ATIALRHLMKDKNAAAFAVNLPMIRNLLQCQRYDHRAFVDEILRYLLTENNRPQLTYW
                     LTCPDKKLSRAVLQTLIEYGYFNDESSLLSILDKPDEGLRMLATTHWLRQQLPLSEAV
                     LTRLLKDRWPRIRQATLFSLTDRAIEMPPALHSTLLLDNNMLIRLRAKNMLHEVMDVP
                     QFWRHVVTSAEYTPSQRRAALYGLDSIHDPNILKLAEWGLSQNVFPLRLAAMHILAKA
                     NPRCGVKETILTTLANPDAAGLRFMVNICVWCRVPLTFEEIRQLQENAPSVKHACAYC
                     RLYHNLNKWDGLILLLQSQHKLTEEFAGKQLAIWQRNFNLSGIQPNALQRQQLQALFT
                     RNPELHNRLWGYIPFK"
     gene            81945..83306
                     /gene="yegQ"
                     /locus_tag="OQQ72_000075"
     CDS             81945..83306
                     /gene="yegQ"
                     /locus_tag="OQQ72_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HCS2009950.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREYFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGVAMPVAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP
                     HGK"
     gene            complement(83636..83953)
                     /locus_tag="OQQ72_000076"
     CDS             complement(83636..83953)
                     /locus_tag="OQQ72_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2009951.1"
                     /translation="MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARSRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            84367..85265
                     /gene="yegS"
                     /locus_tag="OQQ72_000077"
                     /pseudo
     CDS             84367..85265
                     /gene="yegS"
                     /locus_tag="OQQ72_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
     gene            complement(85347..86120)
                     /locus_tag="OQQ72_000078"
     CDS             complement(85347..86120)
                     /locus_tag="OQQ72_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020238881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS2009952.1"
                     /translation="MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLE
                     QKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVI
                     LDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGS
                     IAERSLQDINADLMFVGADGIDAVNGITTFNEGYSVSGAMVTAANKVIAVLDSSKFNR
                     RGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(86226..87266)
                     /gene="gatD"
                     /locus_tag="OQQ72_000079"
     CDS             complement(86226..87266)
                     /gene="gatD"
                     /locus_tag="OQQ72_000079"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS2009953.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGSMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(87314..88669)
                     /locus_tag="OQQ72_000080"
     CDS             complement(87314..88669)
                     /locus_tag="OQQ72_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS2009954.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNVDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSVSLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVASMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFITWRRARGFIKQEKAVLA
                     E"
     gene            complement(88673..88957)
                     /gene="gatB"
                     /locus_tag="OQQ72_000081"
     CDS             complement(88673..88957)
                     /gene="gatB"
                     /locus_tag="OQQ72_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HCS2009955.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG"
     gene            complement(88988..89440)
                     /gene="gatA"
                     /locus_tag="OQQ72_000082"
     CDS             complement(88988..89440)
                     /gene="gatA"
                     /locus_tag="OQQ72_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HCS2009956.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIARE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(89510..90712)
                     /gene="gatZ"
                     /locus_tag="OQQ72_000083"
     CDS             complement(89510..90712)
                     /gene="gatZ"
                     /locus_tag="OQQ72_000083"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HCS2009957.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIVRGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPH"
     gene            complement(90741..91595)
                     /gene="gatY"
                     /locus_tag="OQQ72_000084"
     CDS             complement(90741..91595)
                     /gene="gatY"
                     /locus_tag="OQQ72_000084"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HCS2009958.1"
                     /translation="MHVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATEPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(91903..92955)
                     /gene="fbaB"
                     /locus_tag="OQQ72_000085"
     CDS             complement(91903..92955)
                     /gene="fbaB"
                     /locus_tag="OQQ72_000085"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HCS2009959.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVVSTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            93212..94489
                     /locus_tag="OQQ72_000086"
     CDS             93212..94489
                     /locus_tag="OQQ72_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2009960.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPGTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FPFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVIAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFCESDNEITAIKVDDRDIALTQGEVK"
     gene            94486..95490
                     /locus_tag="OQQ72_000087"
     CDS             94486..95490
                     /locus_tag="OQQ72_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS2009961.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLERKGKIDPDLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSITRHAQQKRTTTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGINAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            95487..96452
                     /locus_tag="OQQ72_000088"
     CDS             95487..96452
                     /locus_tag="OQQ72_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS2009962.1"
                     /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYALPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL
                     AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(96426..97172)
                     /locus_tag="OQQ72_000089"
     CDS             complement(96426..97172)
                     /locus_tag="OQQ72_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS2009963.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(97224..98042)
                     /locus_tag="OQQ72_000090"
     CDS             complement(97224..98042)
                     /locus_tag="OQQ72_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HCS2009964.1"
                     /translation="MQLRITSRKKLTSLLCALGLISIVAIYPRQKVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQARLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP"
     gene            complement(98107..98907)
                     /gene="thiD"
                     /locus_tag="OQQ72_000091"
     CDS             complement(98107..98907)
                     /gene="thiD"
                     /locus_tag="OQQ72_000091"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HCS2009965.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIESDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQYV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(98904..99692)
                     /gene="thiM"
                     /locus_tag="OQQ72_000092"
     CDS             complement(98904..99692)
                     /gene="thiM"
                     /locus_tag="OQQ72_000092"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HCS2009966.1"
                     /translation="MQVDLQSSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQLRAQSMCAAVEQAKSSQTPWTLDPVA
                     VGALDYRRRFCLELLPHKPTAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(99727..99823)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(101404..101697)
                     /locus_tag="OQQ72_000093"
     CDS             complement(101404..101697)
                     /locus_tag="OQQ72_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000274322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2009967.1"
                     /translation="MYGQDTTAGGNLKKDSPLGKLWDFLHSPDLPTNPDFAKPADKTG
                     WVSSYSNPTYVPPTPTITAPQLKVDMAGNPLMTPPAWLNQPLNVNVNVKVQDG"
     gene            complement(101661..>102508)
                     /locus_tag="OQQ72_000094"
     CDS             complement(101661..>102508)
                     /locus_tag="OQQ72_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005113789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail tape measure protein"
                     /protein_id="HCS2009968.1"
                     /translation="GAVGLFVKALNQMKGTTNLTEKDLFDLMQQGKLFSKDILPEVAK
                     QMKAAARNGGALDKAMKSNRASWQRLQTSMQNAMNIFFASGFGNELTSAFDAISAAVN
                     GSGGAFEMFGHIAGKIVEGATDAFTELHDTVILTFRIIEYYASKMGITGEQLKAWGEM
                     AAYAAGVAMFAGSIWKLGVAFKWLLTMLNPLTKLLGVMKGIAAIGGIEAATTGGSGGE
                     GKDKPNKPGRGPKVGKVGGAAALSGGPVGWSIAVGSVGGDYAWDKVMTLTTPCMDRTP
                     PPGAI"
BASE COUNT        25764 a        26283 c        24599 g        25862 t
ORIGIN      
        1 cagtgacaaa gggatgccag cgtttttcaa acagaatatg agcgatcccg gttcggcgcg
       61 gcggtaaggt cgcgactttg agttttggct tcttcaactc tttcatcacc acccagagcg
      121 ttatcaccag caaaacggca accaacggcc acacagacaa attaaaagtc tcagcaatag
      181 agttatgttc agtactgtag tgctgcaagg tttgatttaa accactggca tgtggagaac
      241 gcatcaccgc actcatcacc atataagtga aaagcgcgat ccaactgccg atcaatccct
      301 cacccgcgcg ataccaggtc ccggtggcac atccacccgc cagaacaatt cccagcccga
      361 agatataccc acctataaca gtaccaggcc acgggaacgc cccggcttcg taagtcagta
      421 ggcccgccta aattaacgca aaaaccccca cactttgtac cgaaattgca atcagcaagg
      481 cgtaaaacat gcgattattt ttcgcgatat acatatcgcg aaaaccacca gtcaggcaaa
      541 aacgcccacg ctgcatgaca aatcccagca gagcaccaca aattagcccg cttaatatca
      601 ttgaaaacat aaattaatta accagatgaa tgttaatgag gaaattattc atgactggtg
      661 gaatgcagac caataaccaa attctctaaa ttagaacaaa tggttcttaa tgaggatttc
      721 gataaaaaag aataaaaaaa ccggagccaa atattcattc gactccggtt gattattaga
      781 aaagatgatt atgctacgtc ttcgtactgc ggaaccgggt tacggaagct cttggtgacg
      841 caagccaggt aaatcagacc gatagcagcc cagatcagac ccagaaccat tgagctttct
      901 tccaggttaa cccacagcgc accaacggtc agcgcaccac acatcggcag gaacagatac
      961 tggaagtgat ctttcagcgt cttattacgc ttctcacgga tccagaactg cgagatgacc
     1021 gacaggttaa cgaaggtgaa cgccaccagc gcaccaaagt taatcagcgc cgttgccatt
     1081 accaggtcga agttgattgc cagcagggca atcgcgccaa ccaggatgat gttcatcgcc
     1141 ggagtacgcc atttcgggtg tacataaccg aagaagcttt tcgggaatac gccgtcacga
     1201 cccattacgt acatcagacg cgctacgcct gcatgcgccg ccataccgga cgccagtacg
     1261 gtaatggtgg agaagatcag cgcgccaacc tggaacgctt tacccgcaac gtacagcatg
     1321 atttcaggct gtgacgcatc cggatcttta aagcgagaga tatccgggaa gtacagctgc
     1381 aggaagtaag ttgcaaagat gaagatcatg ccgccgatca gcgcggtcag gaaaatcgca
     1441 cgcgggatca cgcgctctgc atctttggtt tcttccgaca ggttgctgat gccgtcaaag
     1501 ccggtaaagg agaagcacag gattgtcgcc ccggtaatca tcgggataac atgcgcatcg
     1561 ccagaccaga atggacgagt gctcgccagc gtaccagcgc cttcaccttc aaatacgcca
     1621 taaacaacca tgcccagaat caccgcgatc agcaccacct gcaacacgac gattacagtg
     1681 ttgaagttcg ctacggattt cagactacgc aggttaaagg cggtcatgaa ggccaccaac
     1741 gccaccacaa acatccacga tgggatggaa ggcaccagag cttcaaaata gattttcgcc
     1801 agcagaatgt tgatcatcgg cgcgaacaga tagtcgagca gagaagacca acccaccata
     1861 aagccgacag tcgggctaat ggatttctgg gcgtaagtgt atgcagagcc agcagaagga
     1921 tagcggcgaa ccagcttccc gtagctcaga gccgtaaaca ggatcgcaat caatgcgaac
     1981 gcataggctg tcggcacatg accatccgtg aggcctgaaa cgataccaaa agtatcaaac
     2041 agcgtcatcg gctgcatata ggcaagaccc atcattacaa ccggaactaa cgtaagcgtt
     2101 ttacgcaatt ccacgcgaga ggtgtttgga gtaacgttat gcgacatggt cattctcctt
     2161 tacggtgata accgtcgcgt aagcaaaaaa ttgccccatt tttttggatt cctcagcgac
     2221 aacaactgtc gatttttagt aaatatctat ccggtacgaa gcccggcctc ttggtatgaa
     2281 tgattggttt gaagcaaaaa ataaccgacg ctgatgaaac gtcggttttt agtcattttt
     2341 tgacagcggc gcattgtgcc taaatggggg ggaaatgaca agagaatgag aggcttgtca
     2401 taataatttt tctttaaatg gctgattttc cgtcatcaga ttttgcataa acaccggcga
     2461 tcgcactatt tgctaaaatt tcatcccgcc accagccact ggcaagtcct gcggtctgtt
     2521 cattccagcc aatccagacg ggttcaaaga gagtttgggc gaccactttc ttctcgatta
     2581 acgcgccact atcgagaaaa tgttgcgcca gataacgggg taaatagccg cagccgaggc
     2641 cgctaatttg cagctccagc ttggttttaa aatcgaaaac ggtaatggct tcttgttcgt
     2701 cgagaagttg tgaggccgta gaagcgcctg cctgcgcagt atcccccacc acaatcgccc
     2761 gatatcgctt aataatacga cgatttaacg gctcttcttc cagggctaac ggatgatgag
     2821 gcgcgaccgc aaagacttgt tccagatcgc ccaaccgtga aaaaccaaac tcactggaag
     2881 atggtggctc atgcatcgcg ccaacaataa tatccgctcg cccctgagtc agggcatccc
     2941 atgaaccacc cagtacgcca ttgataaact tcaggcgcgt cacgctatga tgttgataaa
     3001 aagcttcaat cagtggcgct agcagagaaa aaggaaacgt gtcgtccacg ccaatcacca
     3061 gctcgttttc ccagccttca tgcagtttga tcgcctgctt ttccagttcc cgcacggtat
     3121 gcagaacttc ccgccctttc tctaataaca tttttccggt gcgggtgaat ttagcgcggt
     3181 gaccgctacg atcaagcaat tgaatattaa ggtcgctttc cagcttgtga acggtgtaac
     3241 tcagagcgga cggcgtcttg tagagtttgg ccgacgccgc cgcaaaactg ccttcttttt
     3301 ctaaggcatc gaggatcatc aacacatcca gcagtggttt catacacgcc cccttgcagt
     3361 gtatgcggcg tcctgctggc gtgatcgttt actccagcgg cattaccagc ggatcgggat
     3421 actggtattc aaatcccagt tcattacaaa tccgactgcc atcaataatc ttacctttgc
     3481 cgctgtccag actatttctg aactgcggag gttccagccc cagtaaacgg gccatctgcg
     3541 gatagaaaac attacgcgca gggtgagctg gcgcacatat attatagatg tgtccgcctt
     3601 taggtgcctg taacaacaga gtgatagcgc caataacatc ttctaaatgg actaaattaa
     3661 caccatgttc accatcaggc gcggtttttc cggcaaagaa gcgtccggga tgacgccccg
     3721 gtccgaccag gcccgcaaga cgcagaatat cgaccgaagt accgggtaaa ttgtgcagcc
     3781 agtcttcgag ttcttctaat actcgtccac tgttggttac cggattacgc ggggtagttt
     3841 ctttcaccat gccttgcgca tcgccataga cagatgttga gctggtaaaa ataattcggg
     3901 gaatacgatg ggccagcgcg ctatccacta actcttgtac cgcttgtaaa tagaactcat
     3961 cgccggagcc gctacgacgt gccggaagcg taatgaccag tgcatcggca tccatcaggg
     4021 catccagatc gtcagaatcg caaactaact caggctccat gcgaagcaga tagctatcaa
     4081 tgccactcat tcgggccgct tcgacaccat cttgtgtggt tttactcccg gtgacttgcc
     4141 agcctcgcgc tgaaagtgac atcgccagcg gcatgcctaa ccaccctaac ccgacaattg
     4201 cgaccttttt catccgttat ctcctgatac accttagatc tataaggcta cgctagcgta
     4261 tcaaaactga caattcattc tatgaatgaa tctgttcaat aatgataacg acatgctgca
     4321 atgagcagtg aatcgtcggt aaccgcgtat accagacggt gctcctctgt aatgcgtcgg
     4381 gactagaaac ctgacaaatt atgtttcagg ggttctggct tccccttacc ttcaaatggc
     4441 gttctgcggg tatctttgat aagttcattg atctttttaa caattcgctt atctgtttcc
     4501 tgccagtaca gataatcatc ccatgattcc tcagaccaga ttagtttcac tcaataatgt
     4561 ccttttctgt tcctttgcct gatttcaggc tatcgattga gtccatcaat ctccgggcgt
     4621 tagcggggga acgcagtaga taagccgtct cttccagcga gttgtattct tcgagtgaca
     4681 tcagaacaca agcctctcca ttctgacgag taataaggat cggggcatga tcttcaacgg
     4741 ctttcatcat tgttgccgac aaattctgac gcgcttcgct gtagctaatt gtacgcatgt
     4801 caatctcctc ttttgtacag ttcattgtac aatgatgggc gttaattaac tatttattaa
     4861 ttagtttgta gatcaaggta ttgtcagtga gacgaaaatc caggcttcgc tatttttggt
     4921 gccgtcagct tagaggacag tcctcttagc cccctccttt ccccgctcat tcattaaaca
     4981 aatccatcgc catagaatat ataaaaaagc ccttgctttc taacgtgaaa gtggtttagg
     5041 ttaaaagaca tcagttgaat aaacattcac agagactttt atgacacgcg ttcaatttaa
     5101 acaccaccat catcaccatc atcctgacta gtctttcagg cgatgtgtgc tggaagacat
     5161 tcagatcttc cagtggtgca tgaacgcatg agaaagcccc cggaagatca ccttccgggg
     5221 gcttttttat tgcgcggttg ataacggttc agacaggttt aaagaggaat aagaaaatga
     5281 cagacaacac tcgtttacgc atagctatgc agaaatccgg ccgtttaagt gatgactcac
     5341 gcgaattgct ggcgcgctgt ggcattaaaa tcaatcttca cacccagcgc ctgatcgcga
     5401 tggcagaaaa catgccgatt gatattctgc gcgtgcgtga cgacgacatt cccggtctgg
     5461 taatggacgg cgtggttgac ctcgggatta tcggcgaaaa cgtgctggaa gaagagctgc
     5521 ttaaccgccg cgcccagggt gaagatccac gctactttac cctgcgtcgt ctggatttcg
     5581 gcggctgccg actttcactg gcaacgccgg ttgatgaagc ctgggatggc ccgctctcct
     5641 taaacggtaa acgtatcgcc acctcttatc ctcacctgct caagcgttat ctcgaccaga
     5701 aaggtatctc ttttaaatcc tgcttactga acggttctgt tgaagtcgcc ccgcgtgccg
     5761 gactggcgga tgcgatttgc gatctggttt ccaccggtgc cacgctggaa gctaacggcc
     5821 tgcgcgaagt cgaagttatc tatcgctcga aagcctgcct gatacaacgc gatggcgaaa
     5881 tggaagaatc caaacagcaa ctgatcgaca aactgctgac ccgtattcag ggtgttatcc
     5941 aggcgcgtga atcaaaatac atcatgatgc acgcaccgac cgaacgtctg gatgaagtca
     6001 tcgccctgct gccaggtgcc gaacgcccaa ctattctacc gctggcgggt gatcaacagc
     6061 gcgtagcgat gcacatggtc agtagcgaaa ccctgttctg ggaaacgatg gaaaaactga
     6121 aagcgctggg tgccagttca atcctggtcc tgccgattga gaagatgatg gagtgatcgc
     6181 catgagcttt aacacaatca ttgactggaa tagctgtact gcggagcaac aacgccagct
     6241 gttaatgcgc ccggcgatct ccgcttctga aagcattacc cgcactgtta acgatattct
     6301 cgataacgtg aaagcacgcg gcgatgaggc cctgcgggaa tacagcgcga agtttgataa
     6361 aaccacggtt accgcactga aggtgtctgc tgaggaaatt gccgccgcta gcgaacgcct
     6421 gagcgacgag ctaaaacagg cgatggcggt ggcagtgaag aatattgaaa ccttccacac
     6481 tgcgcaaaaa ctgccgccgg tagatgtaga aacgcagcca ggcgtgcgtt gccagcaggt
     6541 cacgcgcccg gtcgcttcag ttgggttgta tattcctggc ggctccgccc cgctcttctc
     6601 aacggtatta atgctggcga ctccggcgcg tattgcgggc tgtaaaaaag tggtgctgtg
     6661 ctcaccgccg ccgattgccg atgagatcct ttatgcggcg cagctgtgcg gtgtgcagga
     6721 cgtgtttaac gtcggcggcg cacaggccat tgccgcactg gcgtttggta cggaatctgt
     6781 gccgaaagtg gacaaaatct tcgggccggg caacgccttt gtcaccgaag cgaaacgtca
     6841 ggtgagccag cgtctggacg gtgcggcgat cgatatgccc gcaggcccgt cggaagtgtt
     6901 ggtcattgcc gacagtggcg caacgccgga tttcgtggct tctgatttgc tttctcaggc
     6961 tgaacacggc ccggactcac aggtgatttt actgacgccc gctgctgata tggcgcgtcg
     7021 cgttgccgag gctgtcgaac gccagctggc agaactgccg cgtgctgaaa ccgcccgtca
     7081 ggcactgaac gccagccgcc tgatcgtgac taaagattta gcgcagtgcg tagagatctc
     7141 caaccagtac ggcccggagc acctgatcat ccagacccgc aacgcccgcg atctggtcga
     7201 tggcattacc agtgccggtt cggtatttct tggtgactgg tcactggaat cggcaggtga
     7261 ttacgcctcc ggcaccaacc acgttctgcc gacttacggt tacaccgcca cctgttccag
     7321 cctcgggctg gcagatttcc agaagcgcat gaccgtgcag gaactgtcga aagaaggttt
     7381 ctccgcgctg gcttcgacca ttgaaacatt ggccgccgcc gagcgcctga ccgcccataa
     7441 aaatgccgtt actttacgtg ttaacgccct taaggagcaa gcatgagcat cgtgactatt
     7501 accgatttag cgcgtgaaaa cgtgcgcaac ctgacgccgt atcagtcggc gcgtcgtctg
     7561 ggcggtaacg gcgatgtctg gctgaacgcc aacgaatatc ccacagccgt ggaatttcag
     7621 cttactcagc aaacgctcaa ccgctacccg gaatgtcagc cgaaagcggt gattgaaaat
     7681 tacgcgcaat atgcaggcgt aaaaccggaa caggtgctgg tcagccgtgg cgcggacgaa
     7741 ggtattgaac tactgattcg cgctttttgc gaaccgggta aagacgccat cctctactgc
     7801 ccgccaacgt acggcatgta cggcgtcagc gccgaaacca ttggcgtcga gtgccgcaca
     7861 gtgccgacgc tggacaactg gcaactggat ttacagggca tttccgacaa gctggaaggc
     7921 gtaaaagtgg tctatgtttg cagccccaac aacccgaccg ggcaactgat caatccgcag
     7981 gattttcgca ctctgctgga gttaacccgc ggtaaagcga ttgtggttgc cgatgaagcc
     8041 tatatcgagt tttgcccgca ggcatcgctg gctggctggc tggcggaata tccgcacctg
     8101 gctattttgc gcacactgtc gaaagctttt gctctggcgg gccttcgttg cggatttacg
     8161 ctggcaaacg aagaagtcat caacctgctg atgaaagtga ttgcccccta cccgctctcg
     8221 acgccggttg ccgacattgc ggcccaggcg ttaagcccgc aggggatcgt cgccatgcgt
     8281 gagcgggtgg cgcaaattat tgcagaacgc gaatgcctga ttgccgcact gaaagagatc
     8341 ccctgcgtgg agcaggtttt cgactctgaa accaactaca ttctggcgcg ctttaaagcc
     8401 tccagtgcag tgtttaaatc tttgtgggat cagggcatta tcttacgtga tcagaataaa
     8461 caaccctctt taagcggctg cctgcgaatt accgtcggaa cccgtgaaga aagccagcgc
     8521 gtcattgacg ccttacgtgc ggagcaagtt taatgagtca gaagtatctt tttatcgatc
     8581 gcgatggaac cctgattagc gaaccgccga gtgattttca ggtggatcgt tttgacaaac
     8641 tcgcctttga accgggcgtg atcccggaac tgctgaagct gcaaaaagcg ggctacaaac
     8701 tggtgatgat cactaatcag gatggtcttg gaacacaaag tttcccgcag gcggattttg
     8761 atggcccgca caacctgatg atgcagatct tcacctcgca aggcgtgcag tttgatgaag
     8821 tgctgatttg cccgcacctg cccgccgatg aatgcgactg ccgtaagccg aaagtaaaac
     8881 tggtggagcg ttatctcgct gagcaagcga tagatcgcgc caacagttat gtgattggcg
     8941 atcgcgcgac cgatattcaa ctagcagaaa acatgggcat tactggttta cgctacgacc
     9001 gcgaaaccct gaactggccg atgattggcg agcaacttac caaacgagac cgttacgccc
     9061 atgtagtgcg caacaccaaa gagacgcaga ttgacgttca ggtgtggctg gatcgcgaag
     9121 gtggcagcaa gattaacacc ggcgttggct tctttgatca tatgctggat cagatcgcca
     9181 cccacggcgg tttccgcatg gaaatcaacg tcaaaggcga cctctatatc gacgatcacc
     9241 acaccgtcga agataccggc ctggcgctgg gtgaagcgtt aaaaattgcc ctcggcgata
     9301 aacgcggtat ttgtcgcttt ggttttgtgc tgccgatgga cgaatgcctt gcccgctgcg
     9361 cactggatat ctctggtcgc ccgcacctgg aatataaagc tgaatttacc taccagcgcg
     9421 tgggcgatct cagcaccgag atgatcgagc acttcttccg ttcgctctct tacaccatgg
     9481 gcgtgaccct gcacctgaaa accaaaggta aaaacgatca ccaccgtgta gagagcctgt
     9541 tcaaagcttt tggtcgcacc ctgcgccagg ccatccgcgt ggaaggcgat accctgccct
     9601 cgtcgaaagg agtgctgtaa tgaacgtggt gatccttgat actggctgcg ccaacctgaa
     9661 ctcggtgaag tctgccattg cgcgccacgg ttatgaaccc aaagtcagcc gtgacccgga
     9721 cgtcgtgttg ctggccgata aactattttt acccggcgtt ggcaccgcac aagcagcgat
     9781 ggatcaggtg cgtgagcgcg agctgtttga tctcatcaaa gcctgtaccc aaccggtgct
     9841 aggcatctgc ttagggatgc aactgctggg gcggcgcagc gaagagagca acggcgtcga
     9901 tttgctgggc atcatcgacg aagacgtgcc gaaaatgacc gactttggtc taccgctgcc
     9961 ccatatgggc tggaaccgcg tttacccgca ggcaggcaac cgcctgtttc aggggattga
    10021 agacggcgcg tacttttact ttgttcacag ctacgcaatg ccagtcaatc cgtggaccat
    10081 cgcccagtgt aattacggcg aaccgttcac cgcggcggta caaaaagata acttctacgg
    10141 cgtgcagttc cacccggagc gttctggtgc cgctggcgct aagttgctga aaaacttcct
    10201 ggagatgtga tgattattcc ggcattagat ttaatcgacg gcaccgtggt gcgtctccat
    10261 cagggcgatt acggcaaaca gcgcgattac ggtaacgacc cgctgccgcg cttacaggat
    10321 tacgccacgc agggtgccga agtgttgcat ctggtggatc tgaccggggc aaaagatcca
    10381 gcaaaacgtc aaatcccgtt gattaaaacc ctggtcgcgg gcgttaacgt tccggtgcag
    10441 gttggcggcg gcgtgcgtag cgaagaagac gtggcggcgt tactggaagc gggcgttgcg
    10501 cgcgtggtgg tcggctccac cgcggtgaaa tcaccagaaa tggtgaaagg ctggtttgaa
    10561 cgtttcggtg ccgatgcctt agtgctggcg ctggatgtcc gtattgacga gcaaggcaac
    10621 aagcaggtgg cagtcagcgg ctggcaagag aactcgggcg tttcactgga acaactggtg
    10681 gaaacctatc tgcccgtcgg cctgaaacat gtgctgtgta ccgatatctc gcgcgacggc
    10741 acgctggcag gttctaacgt ctctttatat gaagaagtgt gcgccagata tccgcaggtg
    10801 gcatttcagt catccggcgg cattggcgac attaacgatg ttgctgccct gcgtggcact
    10861 ggcgtgcgcg gcgtaatagt tggtcgggca ttattggaag gtaaattcac cgtgaaggag
    10921 gccatcgcat gctggcaaaa cgcataattc cgtgtctcga cgttcgtgat ggtcaggtgg
    10981 tgaaaggcgt acagtttcgc aaccatgaaa tcattggcga tatcgtgccg ctggcaaaac
    11041 gctacgccga agaaggtgca gacgaactgg tgttctacga tatcaccgct tccagcgatg
    11101 gccgtgtggt agataaaagc tgggtatctc gcgtggcgga agtgatcgac attccgttct
    11161 gcgtggcggg tgggattaag tctctggaag atgccgcgaa aattctttcc tttggcgcgg
    11221 ataaaatttc catcaactcg cctgcgctgg cggatccgac gttaattact cgcctggcgg
    11281 atcgttttgg cgtgcagtgt attgtggtgg gtattgatac ctggtacgac gctgaaaccg
    11341 gtaaatatca tgtgaatcaa tataccggcg atgaaagccg cacccgcgtc actcagtggg
    11401 aaacgctcga ctgggtacag gaagtgcaaa aacgcggtgc cggagaagtc gtcctcaaca
    11461 tgatgaatca ggacggcgtg cgtaacggtt acgacctcga acaactgaaa aaagtgcgtg
    11521 aagtttgcca cgtcccgcta attgcctccg gtggcgcggg caccatggaa cacttcctcg
    11581 aagccttccg tgatgccgac gttgacggcg cgctggcagc ttccgtattc cacaaacaaa
    11641 taatcaatat tggtgaatta aaagcgtacc tggcaacaca gggcgtggag atcaggatat
    11701 gttaacagaa caacaacgtc gcgaactgga ctgggaaaaa accgacggac ttatgccggt
    11761 gattgtgcaa cacgcggtat ccggcgaagt gttaatgctg ggctatatga acccggaagc
    11821 cttagacaaa accatagaaa gcggcaaagt cgccttcttc tcgcgcacta aacagcgact
    11881 gtggaccaaa ggcgaaacgt cgggcaattt cctcaatgtg gtgagtattg caccggactg
    11941 cgacaacgac acgttactgt tactggtgaa tcctatcgga ccaacctgcc ataaaggcac
    12001 cagcagctgc ttcggcgaca ccgctcacca gtggctgttc ctgtatcaac tggaacaact
    12061 gctcgccgaa cgcaaatctg ccgacccgga aacctcctac accgccaaac tgtatgccag
    12121 cggcaccaaa cgcattgcgc agaaagtggg cgaagaaggc gtggaaaccg cactggcagc
    12181 gacagtacat gaccgctttg agctcaccaa cgaggcgtct gatttgatgt atcacctgct
    12241 ggtgctgttg caggatcagg atctggactt aacgacggtg attgagaacc tgcgtaaacg
    12301 gcatcagtga gttgcggggt aagcggatgc gatattgttg tagcatccgg aaaaaaaaac
    12361 gggcaaggtg tcaccaccct gccccttttc tttaaaaccg aaaagattac ttcgcgttgt
    12421 aattacgcag agcgttacgc cccaagacaa tccccgcgcc aaccatgccg cccagcagca
    12481 ccgccagaat caaggtaatt gcctttttcg ggctatcgcg acgaataggt aacgtcggtt
    12541 tcattacata gcggtaagca tgaatatcaa gtttatcaac gtcaagattg tcgatatcca
    12601 gcaggttttg acgagtctga tagtagtttg gtgagaacac caacggacga gtcgcttcat
    12661 gcttaatcat cgactccagc gcttcgctcc ccaaaaggaa caacgtatct tgtgtcacat
    12721 cttcagtctg ctgaacctgt ggctttgtca cctgcgcctg attcgcatac tgcaacgctt
    12781 cctgaatctg acggatacgc agatctttct gctcctgcgc aactacttcc tgagttttca
    12841 gagaatcctg caagtttttc atacgcagcg cgatgttgtc tttcaggtct tttcccagtt
    12901 cttcatttac ctggtcgtca acttgctgga tatacttcgc cagctgcttc tgagcacctt
    12961 caggtgtttc accaacataa gacaccgcta aaggtaatga ctgatttttg acggtaggct
    13021 caatggtcag cttttctgct tcttcctggt tatccagcgt ttccgctaat gctgagaatg
    13081 cagtgctgta acgtccgata agtgaagcct gaatgtcgga gactttcggt acagccgatc
    13141 cgtagatcac attcatcgcg ttggtataac cagcgatttg ccccacatca ggttgagtaa
    13201 cgatagctgt ggaagtccac ttttctttgg caacggccag ataccctata gccagggcaa
    13261 tagcaacaat gacagagatg ataattgtca tcttgccacg ccacaactgc accagtaaat
    13321 caatcaaatc aatctgttcc ggatcatggt tttgcccaga aacattatta ttttctactc
    13381 tcatcattac cctaacggac gaaataattt taagtcgcca tagtttagcg ataatcgcca
    13441 tgaatgctat aggataaatg ataaaaataa tgaattatta caaagggaac ataagagaat
    13501 cagggcgaaa atcgccatga taacaggatg ttagtcactg ccaaagagat cgcgggtgta
    13561 gactttgtct gccacatcct taagctcttc tgccatacgg ttggagataa tgacgtcggc
    13621 ttgtatagtc agcttagaac agctttgatt gtaaaatgag cacgttacca gaaaaaacag
    13681 ccaagtttag aactgatacc gattatcttt ttttcttgtc taacggtata atttaacttt
    13741 cagttatgcc agatgaagat tggctatatt ctagcctgag cgaggattat aaatgaaatt
    13801 tctggttacg ggagctgctg gctttatcgg tttctatcta agtaaacggc ttcttgcagc
    13861 tggtcatcag gttgtaggca ttgacaactt aaatgattat tacgatgtca acctcaaaca
    13921 agcacgactt gatttactca agcacgacaa cttcagtttt tataaaattg acctggccga
    13981 tcgtgagaaa atggcggcac tgtttgcaga cgagcggttc gaacgcgtaa taaacctcgc
    14041 tgcgcaagcc ggtgtacgtt actctcttga aaatcccaat gcatatgcag atgcaaacct
    14101 gattggattc ctgaacatac tagaaggatg tcgccataat aatgttcagc atctacttta
    14161 cgcttcctcc agttctgttt atggcatgaa ccgcaagatg cctttctcta cagatgactc
    14221 tgtagatcat cctgtttcgc tttatgcagc aactaaaaaa gcgaatgaac tcatggccca
    14281 tacatattct catttgtatg gcttaccgac cacagggctg cgtttcttta cggtttatgg
    14341 tccatgggga cgtccggata tggcattatt taaattcact aaagccatgc tggaaggtaa
    14401 aagcattgat gtttacaact tcggcaaaat gaagcgtgac tttacttaca ttgatgatat
    14461 tgccgaagct attattcgct tacaggatgt tattccagaa aaaaacccac agtgggctgt
    14521 agaaacaggc tcgcctgcaa caagttcagc accatatcgt gtctataaca ttggtaatag
    14581 ttcgcctgtg gagttgatgg actatatcaa tgcgttagaa gaggctctgg gtattgaagc
    14641 caacaaaaat atgatgcctc tccaacccgg tgatgtactg gaaaccagtg ctgatacaaa
    14701 agcactgtat gacgtaatag gattcaaacc tgaaacgtca gttaaagaag gggtaaagaa
    14761 ctttgtagaa tggtatcgta acttctataa agtttgattt tacaaaacca taagaaaagg
    14821 ccctaattta ttagggcctt ttcttagaat gaaacaaaat aattaatcat tgccaaacaa
    14881 gtcgcgcgta taaactttat ctgctacatc agccagatcg gcagacatac ggttagaaat
    14941 aataacatca gcttcttgtt tgaacgcatc cagatcacgt accacgcgcg accggaaaaa
    15001 atcgtcctct ttcatagctg gctcataaac gattacaggc acacctttcg ccttgattcg
    15061 cttcataata ccctgaatcg aggaagcacg aaaattgtct gaaccattct tcataatcaa
    15121 acgatagacg ccaacaactt tcggtttacg tgcaaggata gaatcggcaa taaaatcttt
    15181 gcgcgtgcgg ttggcgtcaa caattgccga gatcaggtta ttcggcacag actggtaatt
    15241 tgccagtaac tgcttagtat ctttcggcag acaataacca ccataaccga atgacgggtt
    15301 gttgtagtga ttaccgatac gcgggtcaag gcatacgccc tcaataatct ggcgtgaatt
    15361 aagtcccagg ctttcagcat aactatcaag ttcattgaaa tacgctacac gcatcgccag
    15421 ataagtgttc gcaaaaagtt taatcgcctc agcctcggtt gagtcagtaa acaatgttgg
    15481 tatgtcttgc ttaatggcgc cttcctgtaa taacgcagca aaacgtttag cgcgttcaga
    15541 ctgctcgcca atcacaatgc gtgatgggtg taagttatca taaagtgctt taccttcacg
    15601 caaaaactca ggcgaaaaga tcacattttc aataccaaaa cgttctttaa tggactctgt
    15661 aaaaccaaca gggatagttg attttataat cattaccgcg ttgggattaa tttctgtcac
    15721 atcacgaatg accgcttcca cgcttgaggt attaaaataa tttgttttcg gatcataatc
    15781 ggtaggtgtg gcaataataa cgtaatcggc atttttatac gcgtcatact tatctgtcgt
    15841 agcgcggaaa ttgagatctt tagtcgccag atactcttca atctccttat caacaagcgg
    15901 tgactgcctc ttgttaagca tgtccacttt ggcctgaacg atatccagtg caaccacttc
    15961 gtggttttgc gcaatcagaa taccatttga aagaccaaca taacctgttc ctgaaattgt
    16021 tattttcatt agctctgact tcttccggtt aaacatttag agtggtcatt aatccaccac
    16081 cacagcttca tctactgcgg gatttttaac gctgatgtag atgaactgtc aaggcagcga
    16141 tcctgctgtg cggcgctgta ttatatcgcg tttttaacta taaattataa aaaaaggccc
    16201 taacctgccg ctttgtataa taaaaaagcc cggagggttt ctccgggcct tgctttgatt
    16261 aattgattta aatcagatta atccagccat tcggtatgga acacaccttc tttatcaatg
    16321 cgcttataag tatgcgcacc gaaatagtca cgctgtgcct ggatcaggtt cgcaggcaga
    16381 acagcggcac ggtagctgtc ataataggca accgcagcgg cgaaggtcgg aaccgggata
    16441 ccgttctgta ctgcataagc aacgacatca cgcagcgcct gctggtaatc atcggcaatt
    16501 tgtttaaagt acggagccag cagcaggtta gcgatctgcg gattttcggc atatgcatca
    16561 gtgatttttt gcaggaactg cgcacggatg atgcagccag cacggaaaat cttcgcgatt
    16621 tcgccgtagt tcagatccca gttgtactct tcagacgcag cacgcagctg agagaagccc
    16681 tgggcgtaag aaacgatttt gcccagatac agagcacgac gaactttttc gatgaactca
    16741 gccttgtcgc cagctggctg cgcttgcggg ccagagagaa ctttagatgc ggcaacacgc
    16801 tgatctttca gagaagagat ataacgtgca aacacagact cggtaatcag cgacagcggt
    16861 tcgccgagat ccagcgcact ctggctggtc catttacccg tacctttgtt agccgcttca
    16921 tccaggatca catcaaccag gtagttaccg tcttcatctt ttttggtgaa gatatctttg
    16981 gtgatgtcga tcaggtagct gctcagttca ccgttattcc actcggtaaa ggtctgcgcc
    17041 agttcttcgt tggtgaggtt caggccacct ttaagcagag aataggcttc agcaatcagc
    17101 tgcatatcgc cgtattcaat accgttgtga accatcttca cataatggcc tgcaccatcg
    17161 gcaccgatat aggtaacaca tggctcaccg tcttcagcca ctgcggcgat tttagtcagg
    17221 atcggcgcaa ccagttcata ggcttctttc tggccaccag gcataatgga aggccctttc
    17281 agcgcgccct cttcaccacc ggaaacaccg gtaccaatga agttaaagcc ttcagcagaa
    17341 agctcacgat tacgacgaat ggtgtcctgg aagaaggtgt taccaccatc aatgatgatg
    17401 tcacctttat cgaggtatgg cttgagggaa tcaatagcag catccgtgcc tgcacctgct
    17461 ttcaccatta acaggatgcg acgaggcgtt tccagagatt caacaaactc tttcaccgta
    17521 tagtaaggaa ccagtttttt gcctggattt tcggcaatca cttcttccgt cttttcacgg
    17581 gaacggttga aaatagagac ggtataacca cggctttcga tattgagcgc aaggttgcgc
    17641 cccatcactg ccataccgac gactccgatc tgttgctttg acattgttta ctcctgtcag
    17701 ggggtgttca ccacgggttt gcgcggcttg aatcaagttt gaagagtacc ttataacctc
    17761 aactttacct acctgaaata tctatatgtt cttaatattc ttactccatt tttacaaaag
    17821 ctgctcatac tgttcacgaa ttctattcca tgtgtaatgt ttttcagcca gcgacttcaa
    17881 cttaacacct tgtgttctct ctttgggtga ttctatttta attataagat ccttcaggtc
    17941 tctgaaataa cacgcttgtt caaatgttgt ataacgatta tacttacaat caaaacaaat
    18001 aatcggcttt gcaaaaaaca tcatttcaac tagtgatgga ttagtacctc cagcagaatg
    18061 tccatgcaca tagaactcac atccgcttct aataatattt aattgttcaa catcataaat
    18121 tggatcaata atttctatat tattgtactt tgaatatttt ttcttaagac tacgcccata
    18181 gtcgctactt ccccaattac caataaactt caattttttg gtgactttag aaaaagattc
    18241 taatataaca tgaacattgt tttctggctc aatacgacag agagcaagag catatttact
    18301 ttcggaattc tccacatcgt tacatctttt tgtttcaaaa actagtgaat gatctccgcc
    18361 gtaggcaatt acttgagaat ttaccatata ttctgagcac acatagtttg cgatttcctt
    18421 attatcagaa atcacaatat tagaattttt cacagctatt ttttcagacc attttaaaaa
    18481 ttttttagca aacctacccc atttatctcg acgccattct actccatcaa tgtttgtaat
    18541 tattttaaca gatgatattt tttttattat aggaagaata aagcaaccag agactcctaa
    18601 aataaggagt gtatttactt ttcggaatac aatcgcatgc aatatgctaa atgcgtcata
    18661 aataacactt gatattccat tagcgctaag aggaatataa accaatttcg catttttata
    18721 tgtgcttagt tttttggggt aattttttga tgagcaataa acaatataat taaccttttc
    18781 agtttcaatt aaattttcaa caagtgtttc aaaccctcca tacgaagcag gaacacctac
    18841 agtaccaata atggcggtat tactcatatg tttgttcatt tttttcataa atactacttg
    18901 atttattatt cacagttaca catttcatta atacaagaat tagaaatacg ggttcaaaaa
    18961 atagattatt aaggagtgcc aaggtgaaac ttacaagaat aagaagtaag catatattta
    19021 tttcatctac tgaaacaaaa ttatggtttc gtcttttctt taagttttta gagagagaaa
    19081 taaacatgta actccaagta gcgatatata aaacaagagc tataagacca ctctgatgca
    19141 aaagatataa ataaccatta tcgacgtaaa aattcatatc atcttcccct aacccctgca
    19201 ctaaaccgga accaaataat aaacgagaga cgtcattaat attcaaaacc tgaagccagg
    19261 catctatacg agagaataat gtactcaatt ttgtaaaagc tgaataatct atagaagaat
    19321 atgaattctg aatgtcacca ccaaagtata atataaaact tggtgctatg aacaatattc
    19381 caatcaaaaa aacataatat aaattcgcaa gagttagata gtatcgacga aggtaagtat
    19441 gaatcattat aaataaagat gtaactgcaa atgccaacat cccgtttcta ttatatgtca
    19501 aaacaaccat tatgacaaaa ccaacaaata gaaaagcaaa ctttatacga ttgacagatt
    19561 tattaaaata ataataaatt attgcaaagc aacaataact agctaagata aacccagatg
    19621 aaaatatccc actaaaacga agagtaatac cttcttcact tgtttgaaat ggattaatta
    19681 ttaaaccatg attgtataat tgcgaataaa actcttcaac cattttagag tcatacatca
    19741 cacataaccc aaatattaaa agtgataaaa aggtaagctt tgttattata ttaatcaaag
    19801 agtcaaaaat atccaatttc aactttcccg aaccggctaa acaaatgatt ataattggaa
    19861 aaatatattg tatcgttact gcaagcatta attgtaattg tgtataaaca ttattaacaa
    19921 cgatgttatt tacaagaaac aaaattgcag atatggaaaa gaaaaatata aaacatgccc
    19981 cttgagcttt catttttatt gttctgttaa ttaacagata aaacagagag gctaatatta
    20041 atagaggaat aaacacataa ttaagattaa tatttatata caatgatata gccttaatta
    20101 atccagacaa taaaaaaaac agcaataaca actttggtgc ccaagctagc ataaattaat
    20161 tcctcttgtt attatatcta gccttaaagt aactatcaat tttcttgaaa tttatatcga
    20221 gatctagttg tattctgact tttttactac tttcaatagc aaaaagattt agttcttcat
    20281 ccttttgtga aagcttcata atagcaacca tgaaggaatt tagcgttctt tccttgagaa
    20341 caaagccagt cacttcattt ttgataaatt gttctacgcc accatttctc gttgtaacta
    20401 ctattgcccc actaaaagat gcctctgctg cagtcaaacc aaatccttca tatatactac
    20461 tgcaaatgaa gtatctattc tcattatata aattatttag ctgtttaact gtgggttgat
    20521 atacgtaatg aataaacgaa gggaaatttt ctggttttgt ataagcacta aagcaactga
    20581 atttaattga gctatcaact tcgtgaattt tttgtattgc tcttaataag agatcacaac
    20641 cctttctttc actaggatga tatagaaata aaaatgaagc tctatccctt tcattccatg
    20701 gaatgttaac aaaaaaatca tttttgttta ttccattgta caaggtgaga gaaacatccc
    20761 ctcccatttt tgtaatcttt ttcaccaagt catcagaaat agttatataa tcaacatctt
    20821 tatgtgaaag tgtatagttt aaaatattct caggaatatt ccagttttca taatcctgta
    20881 caaaatatac taatttttta tggttaactc tacatgacga attggcgtat ataaacgtct
    20941 caacagagga gcaaatgaca atattaaaat tttcgatatc tctttttttt agagatttaa
    21001 tcacataatg atttatatta gaggatgtaa aatcaaacca tttgtagaac tttaataatg
    21061 aaaataattt tgcttttatt ttacccacaa ggccagaaaa tcgattataa caaacaatac
    21121 ggttcgtcaa ataaataaaa tcaatctgcc atccaacaga tgccaaatag tttccatatt
    21181 gatacaagac tttatatcca ccaacaggct cccttcttgg tcctggtagt aaaatagcta
    21241 tttttttcat ttagacctta aatttataac cacatttttt agccaacata tacatacata
    21301 tcaaaattga taattgtatg cataaggatg ttaatattgt gccatgcagg tgatacagtt
    21361 tactaaatac aggcatggct ataatattta aaataccatt gattgcaata attttagtga
    21421 agcttttgtc tttcccataa ttcaatccaa tttgtgtacc aaagagattg ttttggaata
    21481 cgaagaatac attaaataac aacaataata atacagagta taattcttgt gatattgttg
    21541 gaaaaataag ctgtatgaga taatagccta taaaaacata caacgtgtaa cataacagaa
    21601 aaacaattaa actaaataat gatattcgag aaatcattat aaatactctt tgtttattat
    21661 tttcaattaa tgatgaaata tgtggaaaaa taacgtttag aataggcgtt gttgtaatcg
    21721 ataacacctt cacgattctt tcagcagttg aaaagacaac gaaactttta ggttccaaca
    21781 ccaaaggtag aaagaaaata ttggcataag aaatcaatgt cacactagct tgagatagga
    21841 atatatacca ccctttaact aaaaatatcc atacatttct gagcaaatta gtacgtttaa
    21901 aagctactac attcaacttc ctcctaatat gtatcatcat tagtatgttt gatgcataat
    21961 ttgctattgc acataaaaat agataaaccc aagcatcatt atcattattg accaaaataa
    22021 aaacgaaggg ataaacaata agcttaggaa gtaagccata gaacgtaatt aacttaaaat
    22081 caccacatcc ttgcaaatac caatttgatt gaaatacaaa gcttagcatc caaaaaaaac
    22141 atagcaacca ataaaggagg tcgggtttag tcaatgccat caacgacaca agcaaaaaga
    22201 atgagcaaaa tataaaaata cagagccgtg acaatatgga aatataaaga aaactcttac
    22261 attttcttag atgctttaca ttattactaa tatatctaac accaaacaga tccagcccat
    22321 aattaattaa aacagcaaaa aataatacta atgattgaat aacaacaaaa tctttataga
    22381 ccgcaataga gagtttattg attaagaaag gaattataag aaagggtaga atataattcc
    22441 caaactggta aataaattga ttaactattt tttttaccac attctttcct tcgaataata
    22501 tcttcgataa ttttattaac ttttatttca aataaccatt ctttttgtat gctggcttta
    22561 atgctttccg aattatttga gacaattaat tcatttattt tctcatataa caaatctctt
    22621 tttgagtatt ctagataatt aacaaaccat cgactcttaa tttcaaaatt catagatgat
    22681 aaacatggaa tgccatattt aaagtactca tacattttca atggtgattc atcatgcgat
    22741 ttttctggca gatatggcaa taatccgact ttaaaagatt tcattattga aggaagatca
    22801 gagtatttaa atgcccccgc tatttttata ttttcattca gcttatcacg tatagaatca
    22861 tcaaaaaatt ttccccaaat gatgatactg aatttttttg ataatttatt taaaaaatca
    22921 atatctaatt tatcagtaac gaagccaaca aatcctaatt gatatacctt atttggagtt
    22981 ccatctataa aacattcatg attttggttt tcaagataaa caccatttgg cattacatac
    23041 ttattaggat ttagaaaatt ttttatcgct ttgtcggaaa cagctgtaat tatatcagca
    23101 ttttcgtcta cataagcata tttatctcga acagcttttt tttctttttc agaaaatcta
    23161 ttatgaattg aaaaattatc tattaaatca taccaatatg ttattcgttt attgttcttg
    23221 aattctaatt cggctatagg ggtaaaatca atgatgattg aatcatctgt aaataacgat
    23281 gatattctat ttaatatctt cttgtaacaa tatttcgtcc atatgcggcc aaataacggt
    23341 ccgattaaat cataacttgt atggtcaata aaagttatcc tattactata tgctttatac
    23401 tcactttttg ctttcttctt attttttaat ctttcatata tcgacacagg tctatttata
    23461 aatgtaacat gatactttct agatagaatt tctgcaattt gtaaatctct aacagatgtc
    23521 ccatattcat tccaaaaata cgcatctcta tagccaataa taataaactt catgatttac
    23581 cgctcttata atgcttaccg ctaaaatatg cttttgcaaa atatattaaa cttatatcac
    23641 ttttattaaa aatcaacttc gcaagaagtt tttttgcgac agtaaaaaac gtaaatttac
    23701 agaaataata tcttaatgtt aatccttgat cataacttct ttctttaatt ctaaattgct
    23761 ttacttttat agcttcattt tctagtctag acaatgaatg caatacaacg cactcactga
    23821 tttttataaa ctcactttcc ccaattttat tcagccgtag aaaaaaagtt gaatcaacac
    23881 cataaaaata aaacctagaa tcaaaaacat caccaaatac ttgtcgaagt ttctcacata
    23941 attttttaga tatacaaatt ccactcccaa tagcaagcac tgtatttccc ttgttaaacg
    24001 attgaatgct atatgtttta ggactttgaa tattgtttcc tactattata ttaggaatga
    24061 tacaatcaga tgtagaatta agacattcca aaacataatc atatttcaat atggaatcat
    24121 gatctagtaa aatatatttt tctgactcca cctcattaat aaataaatta tatatataac
    24181 ttaatgattc attatttatt gtttgacaaa cttttaaggt atagtaatct gtagtcagat
    24241 taaatgcgat ttctcttggg ccattattcc aaagacacag aataatatca tcctttgaca
    24301 tcctattttt ttttagaact ctatctatat gagtaaatgt ttcacactgt tctacttctt
    24361 ttccataaag tacaattaag atagctaact tataataatt agtattctcc attccatttc
    24421 tccaacgcta tcatttcttt aaacatcttt tgtttttcat cttttataga taaaatcggt
    24481 ttatggatac ttaaaggcca ctttacgtca atgtcaggat catcccaaat aatccctcta
    24541 tcactctctg gatgataata attggtcgtt ttatataaaa actccgccgt ctcactcagc
    24601 accaaaaacc catgtgctaa tccttcaggt atccacaact ggcgcttatt ctcagcagat
    24661 aaattcaccc caacccattt gccaaaagtt ggtgacgatt tacgaatatc aaccgctacg
    24721 tcaaaaacct caccaacagc gcaacgtacc aatttccctt gcgcatacgg ttctaactga
    24781 taatgcagcc cgcgtaaaac acctttacta gacttcgaat ggttatcttg gacaaattca
    24841 actttgcggc ctacagcttc ttcaaatact ttctggttaa agctttcaaa aaagaagccg
    24901 cgctcatcgc caaaaacttt tggttcaaaa atcagcacat cagaaatttc tgttttaatt
    24961 acgttcattt aattaataac ctttaatcat tttcagcaga tactgaccat aagcattttt
    25021 tttcagcggt tcagctaata ctttcacctg ctcagcagca ataaatcctt tacggtaagc
    25081 aatttcttct gggcaggaaa cctttagtcc ctggcgctct tcaatggtgg caatgaagtt
    25141 gcttgcctca atcaggcttt gatgtgtccc cgtgtccagc catgcataac cacggcccat
    25201 catggcaaca gataaacgcc cctgttccat ataaatacgg ttaatatcgg taatttctag
    25261 ttcaccacgg gaagaaggct taaggttttt cgccatttcg acaacgtcgt tgtcatagaa
    25321 ataaagcccg gttaccgcat aattactttt tggttgtaac ggtttttctt ccaggcttat
    25381 tgccgtaccg tttttatcaa actcaacgac accgtagcgt tcaggatcat ttacgtgata
    25441 agcaaatact gttgcaccac tttctttgtt aacagctacg tccattaact tcggcagatc
    25501 gtggccgtag aagatattat caccaagaac caaagcacaa tcatcaccac cgataaactc
    25561 ttcaccgata ataaacgcct gcgcaagccc atctggagtc ggttgcactt tgtactgaag
    25621 atttagcccc cactggctcc cgtcacccag cagttgttga aaacgaggag tatcctgtgg
    25681 cgtactgata atcagaatat cgcgaatacc cgctaacatc agtgtagaga gcggataata
    25741 gatcatcggt ttatcataaa tcggtaatag ctgtttactg acagccatag ttacaggata
    25801 aagacgagta ccagaaccgc ccgctaaaat aataccttta cgcgttttca tttcatcatt
    25861 ccttttaatt catcttgctc caccatcacg aacaagatgc aaaaactatt aaatagctgt
    25921 agtcgtaaat aattcgttga gcatgcgttt cacgccaatc tgccagtcag gcaagacaag
    25981 cgcaaagttc tgctgaaatt tttctgtatc aaggcgagag ttatgcggac gacgagctgg
    26041 tgtaggatag gctgttgttg gtactgcgtt gagcttgttg agtgcaaggg gaatgcctgc
    26101 tttgcgcgcc tcttcaaaaa ccagcgcagc ataatcgtgc cacgttgtgg taccactagc
    26161 taccagatgg tacaagcctg cgacttccgg tttattcagt gccacacgaa tggcatgtgc
    26221 cgtacaatca gccagtaact ctgcgccagt tggcgcacca aactgatcgt taataacagc
    26281 taattcttca cgctcttttg ccagacgcaa catcgttttg gcgaagttat ttcctttacc
    26341 tgcatagacc cagctggtcc ggaaaataag atgcttcgca caatgctctt gtaatgcttt
    26401 ttccccggct aacttggttt caccataaac gttcagcggt gcggttgcat ccgcctcctg
    26461 ccatggtatt tcaccggttc ccggaaatac gtagtcagta gagtagtgaa taacccatgc
    26521 accgacctca ttggctgctt ttgcaatcgc ttcaacactt gtcgcattga gtaattgtgc
    26581 aaattcgggt tctgactcag ccttatctac cgcggtatga gcagccgcat taacaataac
    26641 atcagggcga atttttttga cagtttcagc tacaccttca gaattactaa aatcaccaca
    26701 ataatcagtg gagtgaacat caagagcaat caaattaccc agaggtgcca gagcacgctg
    26761 tagttcccaa cctacctgcc ctgttttgcc aaaaaggagg atattcatta ctggcggccc
    26821 tcatagttct cttcaatcca cgattgatag gcaccacttt tcacattatc aacccatttt
    26881 gtattggaca ggtaccattc cactgtcttc cgaatcccgc tctcaaacgt ttcctgtggt
    26941 ttccatccca attcgcgacc aatcttctca gcatcaatcg cataacggcg atcgtgtccc
    27001 ggacgatcgg caatataagt gatttgctca cgataagatt tctctttcgg tacaatctca
    27061 tccagcaaat cacaaatagt gagcactaca tctatgtttt tcttttcgtt gtgcccacca
    27121 atgttataag tttcacccgc tttaccttcg gttacgacgg tatataacgc acgcgcatga
    27181 tcttcaacat acagccagtc gcgaatttga tcccctttac cataaatagg taatgcttta
    27241 ccttccagag cattgagaat aaccaatgga atcaattttt ccgggaaatg ataaggacca
    27301 taattgttag agcaattagt cacaatggtc ggtaaaccat aggtacgttt ccacgcgcgg
    27361 actaaatgat cgctggatgc tttggatgcg gaataaggac tgcttggcgc gtaagctgtc
    27421 gtctcagtaa ataagggtaa ttcttctgta ttatttactt catctggatg aggcaaatca
    27481 ccatagactt cgtcagtaga aatatgatga agacggaagc tatttttctt gtcgctatca
    27541 agagcagacc agtaattgcg agcggcttcc aaaaggacat aagtaccaac aatattggtt
    27601 tcaataaatg ccgcagggcc tgtaattgaa cggtcaacat ggctttcagc agccaagtgc
    27661 atcactgcat ccggctgatg ctgagcaaaa atccgtgcca ttacagctgc atcgcaaata
    27721 tccgcatgtt caaaaacata gcgttcagaa tcagaaacat cagcaagtga ttccaggttt
    27781 ccggcgtacg ttaatttatc gacattaaca acactatcct gcgtattatt tataatgtga
    27841 cgaactacag cagaaccaat aaatcctgcg ccaccagtaa caagtatttt cacttaattt
    27901 attccatatt acttcagagc atgctgtgaa ataagcggct ctcagtttga ttaatagagg
    27961 tattaatgca cgctaccgcc cctggcttta cagctaccag agcactgcat gcatgcctac
    28021 gatgtgacga gcgttaccca ctcgcgctaa acccgaaaaa ttcaaacgct aattgtctta
    28081 ccaatccgct ctggaaacaa ggaaaatcct ggaaaacttt gactaaaatc ctattgctaa
    28141 ctcgttgtta tcctgattgt ttatataaaa caacggcagg aatattcgca acaaattact
    28201 ttcgccacga atcttcactg ccgttataat tttcttatca accgttacat ccggtcagat
    28261 tttcattatt cgcttaacag cttctcaatc cctttgcgga acttcgcccc ttctttgagg
    28321 ttgcgcagcc catacttcac gaacgcctgc atataaccca tttttttacc gcaatcgtag
    28381 ctgtcaccag tcatcagcat ggcatcaacg gactgttttt tcgccagttc ggcaatggca
    28441 tcagtcagct gaatacgccc ccatgcacca ggctgagtgt gttcaagttc cggccaaata
    28501 tcggcagaaa gcacataacg gcccacggcc atgatatctg agtccagcgt ctgcggctga
    28561 tccggttttt cgataaattc gacgatgcga ctgactttac cttcgcgatc cagcggttct
    28621 ttggtctgaa tgacagagta ttcagagagg tcacccggca tacgttttgc cagcacctgg
    28681 ctgcgtcctg tttcattgaa gcgcgcaatc atggcagcaa ggttgtagcg cagcgggtcg
    28741 gcgctggcgt cgtcgatcac aacgtctggc agcaccacga caaatggatt gtcaccaatg
    28801 gcaggtcgtg cacataaaat ggagtggccc aaacctaaag gttcgccctg acgcacgttc
    28861 ataatggtca cgcccggtgg acagatggac tgcacttccg caagcagttg acgcttcacg
    28921 cgctgctcaa ggagagattc taattcataa gaggtgtcga agtggttttc gaccgcgttc
    28981 ttggacgcgt gagttaccag gaggatttct ttgatccctg cagccacaat ctcgtcaaca
    29041 atgtactgaa tcattggctt gtcgacgatc ggtagcatct ctttgggaat cgccttagtg
    29101 gcaggcaaca tatgcatccc aagacccgct acaggaataa ctgcttttaa attcgtcatt
    29161 atttcatcca cctgtaaaat ggttgctgaa ttatagcttg ttcgattttt ttcgccagca
    29221 tcaattaccc tgaattgatt actgaattac ttgtgatgtt acgccgcttc gttgtggatt
    29281 gcagtagcat tgttcctaag tatggctcca tttttccagg aatggtcgca aatctactct
    29341 ctccgttccg gcaatctaaa gttaatcttt tccacattaa caatatggtg attaaccctg
    29401 tcgatatcga cggagctttg tcctttctca ttcaccgcat gaacatttgc aagagacagc
    29461 agtgtttctt ttttcgccat aaagacgccg cgaacgtctt tgcgcatgtc gaagttcatg
    29521 ctcaatgcgg gtccaactga ggattcctgc atcacattga tattacgcat aaaaaggtgt
    29581 tgcggtttat tgtatagctc aagcgacgca cgcttcatct caatgttagt cagcgccaca
    29641 aaggagacgg cattcccggc ggagatttgg ataccgcgca atttataagc aaggtgggta
    29701 ttatccagtt gaatattatt cactcggaaa ttttgcggta tcgagagata tttgccttta
    29761 attaccccat agccgattaa catcccggcg ctattaatca tttcaatatt atcaatcacg
    29821 aaattgtcac aaccgtaaat agcaactgtc gcgttatcaa tgcctgcttt cttactgaaa
    29881 tccggcgtga tattgcgggc tttgatatta cggataacaa aatgtttgcc attttcaaca
    29941 tggatcaact gccgacaatc cgatcccgtg atattcgcca cgacaaagtt tttcactgcc
    30001 tgatcttccg ggtaattatt atcgtaagtg cttcccgcaa ggcctatgcc aatgccccag
    30061 ttgattttgc cgttggtaca gttgatgcgc tcgatgacat ggtcggagat caaaatatca
    30121 ctgtcgttaa tcgccacgtt ccattcaata gcgtccccct gtaaatcact aaatttacag
    30181 ttggtgatgt tggcaccaat tatctggtta tgaaatccct ggcgtaagat ggcgtaatta
    30241 gcgtggctga cagtgaggtt atcgatggtc aggttgcgca tgacccgttt gtttttgccg
    30301 ccgatataaa tctgcgttac cgggccaaag ccgctcatcg ccagcccttt gatggtgcag
    30361 tcagaaccac gcacatccag ggtgatgtta tgcatactgc cgccctcctc ccctgtcacc
    30421 tggctgccgt cctgtaagac aaatcgccct ctgccgttgc cgcgcaggct tccaaggatg
    30481 tgtaacgttt ttccaggagg aatgaagatg ccggtgttga tattgtcaca aacgaatcca
    30541 gcaggcacga cgaccgtttg cccttcgctg aaggcttgtt taaatgaggc gatccagtcg
    30601 tgagggttgt agtcgttaat gttaacgctt tgtcgggcgg gaagtgcgcg agcgaaaggg
    30661 gtatggagga aggcaagcgc cgagcttgcc gtcaggaagg tgcgtcggga gattttttta
    30721 aatggcatac gttctcctct ataaagcctg caacaagctg gcgagttctc ggttaatcac
    30781 ctgctggtta aaatcgtgtt cgactttttc gcgcgcacgt ttgacaaccg gagccagttc
    30841 gtcggtgtta agttggctaa acgccgccag tcgttgcgcc agtgcgcgag catcgttctc
    30901 aggcaccagc cagccggatt tgtcggcctc caccagttcc ggtattccgc tatgcagagt
    30961 agaaaccacc ggaatgccga ccgccatcgc ttccattagc gccactggaa tgccttccat
    31021 atcaccatcc gcgcccgtta ccgatggcaa caggaagaca tccgcgtcgt cgagcatcgc
    31081 tttcacttca tggctcggtt taaagcccgg catctctacc acatcttcca gttgatattg
    31141 ttcgatgagg gtgcgcaggc gtcgttccca cgggccaatg ccgagaatgc gatagcgaaa
    31201 tgccacgccc tgctctttca actgacggca ggcttcaatc gccacatgca gacctttttt
    31261 ctcggttaag cgtgcgacgg aaataatctc cagcggtgtt gcgggcgctt tcacgggacg
    31321 cgggctaaag cgcgtcatat ctacgcccat gcgcgatacg gcgatttttt ccctcgggca
    31381 gcccattttt tgcagccttc cggcccacaa atcgcttatc ggtaacatca gatcgccacg
    31441 gcgaaacagt tgttgatatt cgggagtgta gtggttgagc acttcccgac tggaaatatc
    31501 aatgccgtgg aaaatggtgg caattttgcc gcgaatgaca cccagttcgc ggagttttgc
    31561 tgcggttacc cccgctggac caaaatgagc gatgaacaca tcggcgcgaa acggtgttgc
    31621 gacctggccg caaatggcag acaaaatcag attccgcgac tctgcgccat agcgtttgag
    31681 gttgagcgcc tgccaggtat ttttacgatg aatgcctcgt aacgtctggc tggcacggtg
    31741 gcgtagcttc gccactttgc ccgtaggttc gtcctgtaac caactggttc ttgcggcaag
    31801 gttgtatttc gtccatgccg cgtgggtgtt ctgggtgtcg cctttttgca gcgcgacaat
    31861 ctccacctca aagcccatat caataaacgc ggtaatttga ttgaggacga aggtttccga
    31921 agacagcgga aatttcagta aaaagaagcc gaccttcatt tcacctcccc gatgcgctca
    31981 agcacagatt gcaccatctg cattcccgtc tgacgctcac gactgacggc ttcgctaagt
    32041 cgtgcgttca gcgccggaag ctggcctaag gtatccgcaa ccatcgcttg caggctgccg
    32101 tctaataaat gacggatatc aattgccatc tccggtagtc ccagctgctg cataatcccg
    32161 gcggatttat gttcatagtt gatggcaatc gccggagtag caaagttcat tgagataatg
    32221 gcggagtgca ggcgcgtacc gacggtgagt tcacaggccc ccagaatttt gcccatttcc
    32281 agatcgttga gttcatccat cactacgtgg taacgggcag gatcgctgat gtgctgacgc
    32341 aagttgagcg ccaccatgcg gtcgtctttg ttatagctgt cgatgcccgt acaggtggag
    32401 agcgcaatca cctgatagcc ttcgtcgaga atgcgattga ccaccccggc aaaggctttt
    32461 tcatacgctt gctgagtggt gccgagacgt ttgtcgaacg gtgccagttc gcgcagggta
    32521 attgccaccg ttttctgttg tgcggcaacg tccagccagt gttgaacggc atagctggca
    32581 gtgaagtctt cggtgtggtg atcgaccagc cacgcagtat cgacgccatg ttccactttt
    32641 gcagtggtga tattgctgcg tttcatcaga tcaaggctga ccgattcgcg caggatcagc
    32701 gcgtcacagt gaccaaaaac gtagttcgcc agttggttaa attgctcatc ctggaaggga
    32761 ccgacgctgt gaccaatcat aaacagcggc tttttcgcca taaacgtgca aagtgcatgt
    32821 tcaaactgcg gcacgccata gagatcgaca aaaaacgatc cgccgacctg gataatggca
    32881 tcgtaacctg acagtaggcg cacgaagtca gtgaatccct gggcgatggc aatattgcgc
    32941 agcttgccag tgtcggtgac gcgcgagagc aatacctggt gttgatagcg gcgacggagg
    33001 acttttttaa cgcgcccgac aacgcccgcc gcgctgttgt gttgtttcat ttgcaggaac
    33061 agcggatcgc ccattaccgg gcggttgagc agccaggaag aactgaccgg atagcggctc
    33121 atcacgtcca cttcggcgtg tggattgagg atgttgatgg catcaagtaa gccacgcaag
    33181 atggcgctgt cgccacgatt gccgcaagtg tggttgccca gaataagtaa tttcattttt
    33241 tcctcataaa tttgatgcca ggtgaggctg cgtttgtttt gttcgttgcc gttttttgcc
    33301 tgatgcgacg ctggcgcgtc ttatcaggcc tacaagaccc gagcacagaa ccgtaggccg
    33361 gataaggcgt tcacgccgca tccggcattc agtgcctgat gcgacgctga cgcgtcttat
    33421 caggcctaca agtcccaagc acagaaccgt aggccggata aggcgttcac gccgcatccg
    33481 gcattcagtg cctgatgcga cgctgacgcg tcttatcagg cctacaggtc ccgagcacag
    33541 aaccgtagga tggataaggc gttttacgct gcacccggca accgttgtcg gaaccgaaaa
    33601 caacaactca ccccgcccgt aaaagcattt tcattttttc gctgcgacaa aactgacgct
    33661 tcacttccac caccagcgga tggcgcgaca gcacaatcat caccacaaac gccagcacgc
    33721 ccgcggctat ttgcaccccc agcagcatcc ccagcgccag ttgccctttc agcacaatgc
    33781 ccagcacata actgaccacc agcgtcggca gcgagagata aaacggcagc cacaaactca
    33841 ggatgtactg gcgataactg gaaccaagaa ccggtttaat catcacgaag taactcagaa
    33901 tggtgttgat aatctgcacc agcaggaaac cgagcgtgac gccgattgcg cccgccatct
    33961 gcccaccaat aacaatcgcc ggaataaaca gaaaggtttt gaatacgttg aatttaaagc
    34021 tgatgtcgac ccgcgctttc gccatcagca gcgaaccaat cgggttaccc acggagcgca
    34081 gcagacccac aatacacagc aattgcagca ccggaataat gctgttccac ttttcgccga
    34141 ataccagcgg tacgaagtta ttcgacacca ccatcagccc cagcagcgct ggaaagttaa
    34201 taatccccac caccgacagc agcttgtaga agttgacgcg cagcttttcg gtgtcgtcct
    34261 gaattttggc gaatgccgga aacaacacac gggtgatgat cgggttcagc ttcatcggcg
    34321 gcacaacggc cacgttgtac gccaggttgt atcccccggc cacgcccgcg ccgagaatac
    34381 gcgccagcac cagcgttgaa aggttggtgt tgagatagtt gatgatgctg tccgccgtca
    34441 gccaggcacc aaagcgtaag ttcggtgcca ccgacaccag cgagaagtgc agaccggggc
    34501 gataaatttt gcggccaaag tagccaaaca gcagcgttct taccgcacta ttgaccagat
    34561 aaccgaggat cgcgatcatc gccagcggcc agaaatgggc gctaaccacc gtaaaagtaa
    34621 agcccgccag caccgcgctg gtttcgatca tgccgatttt gttgaactcg agctccttct
    34681 gcatcaacgc gcggaactgt tgcccgtggg ggatcaccac aaacgccagc gacaatgttt
    34741 taatcaacgg tgccaggtcc gggttattca gcacgtcacc aatgagatca ctcaacaaaa
    34801 acaccgccac gcacaccaca agccccagcc cgacgttcag ccagtacaac gtggtgagtt
    34861 caaggtgact gatttctttt cgctgaataa tcgagttagc gataccgaag tcagaaagcg
    34921 tatctgccag cgcgataatc accagcgaca cggtaagcag gccgaactgg tggttgtcga
    34981 taatccgcgc cagcacggtc atctgcacca gcccgaggcc gatgatgatc accgtggcaa
    35041 tcgccgacca cttcgcgccg ctgatggtct tttcacgtaa gctcatatca atatgccgct
    35101 ttgttaacga agcccttgaa taccgtcagg aaaacgattt tgatatcgaa ccagacgctc
    35161 cattcgcgga tgtactcaag gtcgaactcg acgcgttttt ccattttctc cagcgtgtcg
    35221 gtttcgccgc gccagccatt aatctgcgcc cagccggtaa tgcccggttt cactttgtgg
    35281 cgcagcatgt agccttcaat gagctggcga tactgttcgt tatgcgccac cgcgtgtgga
    35341 cgtggcccga caatcgacat ccccccggtc agcacattga taaactgcgg caattcgtcc
    35401 agcgaggtgc ggcgcagaaa gttccccact ttggtgacgc gcggatcgtt ctgcgtcgcc
    35461 tgagtcacga ctttgtcgtt ctccatcact ttcatcgaac ggaacttcca cactttgatc
    35521 ggcttgccat ccatgccata gcgagtctgg cggaaaataa ccggtcctgg tgaactgagt
    35581 tttaccgcca gcgcaataca gcacagcacc ggggagatca gcagcagaat aagcgtcgcc
    35641 agcacaatat cttccgcacg ttttagcagg cggttaaccc cggaaagcgg cgtatcgtac
    35701 agcggcacca ccggaacgcc gttcatctct tcgagacgtg aatggagaat gttgaaggta
    35761 aagacgtcgg ggatcagcag caccgaacag gtggtgtccg ccagttgatg gaccagtttt
    35821 ttcactcgtg cgccgtcgca catttgcatc gcgatataga cgttatgaat cttgcccgct
    35881 ttcgcatcct cgaccagctg ttgcagattg cccgcccagt cgttagaaac gccacccggt
    35941 ttcgggtcgt ggtaaacgcc caccacttca aaccctaacc acggctgatt acggaagctc
    36001 tccatcagca tttgtccggc ggctaaatct cccgctacgg cgaccatacg cttgttatag
    36061 ccatgattac gcagccagcc cgccccaatg cgaatacatg aacggcaaac caccagtccg
    36121 atactggtca gccagatttt cagttgcgtg tcgaaatcat tattgaacgc caccagtccg
    36181 gcgctgaaaa tcacgcttaa ggtccagttt tgtagcaaca gggcaaattc tgtcgctgcc
    36241 cgaacaccgc gccatgagcg ataaaaatcg gtgatgccgc ccagcatctg gaacaccacc
    36301 agcgtaatca acgccaccaa caggtgcatg tagaggaatg acagtccgct cacttcgcaa
    36361 accagccata gtccggcaaa catgatggtg atatctgaaa agcgttgcac catagagatt
    36421 aacgatgcat tggttttcgc tcgctcgcgc ttttttagat ttgtcatcgt tgttcctgtt
    36481 attagcccct tacccgcagt ggggtaaggg aagatccgac attactcatt cagcaacgtc
    36541 agcagagttc gcgttcgcgc ttccatcagc ggcacatcac cgcgcgattc cacattcaac
    36601 cgcaccaccg gttcggtgtt ggaggtgcgc aggttaaagc gccagtcggc aaaggtcatg
    36661 ctgatgccat cggtacgatc caccgccagc gcctcacggc taaaatgctg ttcgacgcga
    36721 ttaatcgcct caacgggttg cgccagtttg ctgttgatct caccgcttgc cggaaacgcc
    36781 gccatccggt cgcgcaccag ttcgcccagc gtttttcctt tcaggcacaa cagttcggcg
    36841 accagcagcc acgggatcat gccgctgtcg cagtaagcga aatcacggaa gtaatggtga
    36901 gcgctcattt cgccaccgta gatggcgtct tccttgcgca tccgttcttt aataaaggcg
    36961 tgtccggttt tcgacattac cggggtgccg cctgcggcag tcaccacatc aatagtgttc
    37021 caggagagac gcggatcatg gatgatcttc gcgccgggat ttttttcgag gaacgcttct
    37081 gccagcaggc cgacaatgta gtagccctcg ataaactgcc ctttttcgtc aaacagaaaa
    37141 cagcggtcaa aatcgccatc aaaggcaatg cccatatccg cgccgtgttt gatgaccgca
    37201 ttgcgggtgt cgtcgcggca ttcaggcagc agcgggttag gaataccgtt ggggaaattg
    37261 ccgtcgggcg tgttgtgcac tttgatcaat tccacgggcg cgccgagggt tttaaagcgg
    37321 gcttcaatgg cgtccaccac cggacccgct gcgccattcc cggagttaat caccagcttg
    37381 agcggcgtga ggtttttgac attgatataa ccgaacaggt gatcaacgta agcgtcacgc
    37441 aggttgattt gctgatagcg accgcgtttg gtttcatcga cgggaggaaa gtcgttggct
    37501 tctgccagac gctggacgtc gcgcagtccg gtatcaccgc tgattgggcg agccccttcg
    37561 cgcaccagtt tcatgccgtt ataatccatc ggattatggc tggcggtaac ttcaatgccg
    37621 ccatccacgc cgagatggaa cgtggcgaaa tagatctctt cggtgccgga catgccaata
    37681 tccagcacat cgacgcccgc atcctgtaaa cctttcgcca gcgccagttt taaggtttcg
    37741 ctggtgagac ggacatcacc gcctaacaca atggttttcg gtttgagaaa ttcgccatag
    37801 gcgcgaccaa tgcgccaggc gatatcttca ttcagttctt cgcctaattt cccgcgaata
    37861 tcataggctt taaagcaggt taattttttc atgtcgttac cctttttcag gcaatagttg
    37921 gccctgaccg aaacggccaa ttttgttttt gtcgttattt acatctcggt ttcgcattca
    37981 ttgcctgatg cgacgctgcc gcgtcttatc aggcctacaa atccgaaccg taggtcggat
    38041 aaggcgttca cgccgcatcc gacaaacagc gcctgatgcg acgtttacac ccgtccgtag
    38101 cgatccgcga agcgcaccac atcatcctct tcgagataag agccggagcg cacttcaatt
    38161 aaatcgagcg gaattttccc cgggttttcc aggcaatgcg tcgcccccag cggaatataa
    38221 atggactcgt tttcaccaag cagtttgata tcaccgtcga tagtgacttt tgccgttcct
    38281 gcgacaacca cccagtgttc cgcgcggtga tgatgcatct gtaccgacaa gccttcgccc
    38341 ggtttcacgg tgatgcgttt cacctggtag cggtcgcccg cgtcgataga gtcatatttg
    38401 ccccacggac gatacacttc gcgatgcacc cgatgctcat ggcgaccatc ggctttgatc
    38461 tgctcgacca cttttttcac atcctgcacc gcgttacggt cggcaatcag cactgcatct
    38521 ttggtctgca ctaccaccaa atctttcacc ccgacggtgg tgaccaggcc agattcggca
    38581 tacacatagc tgttttcagt tttgtgatta atcacatcgc cgtggcaaac attgccctcg
    38641 gcggtgtggg cgctgatctc ccataatgaa gaccaagaac cgacatcgct ccagcccgca
    38701 tccatcggca ccacaacagc atctgccgta cgttccatga ccgcgtaatc caccgactct
    38761 tccgggcagg ggagaaacgc ttcttcatcc acgcgaataa aatcgagatc cggatcgacg
    38821 gcgctcatcg ctttttcaca ggcatcgaga atatccgggc gatatttttt cagttcttcg
    38881 agatagcgtc cggcgcggaa caggaacatg ccgctgttcc agtaatattc gccacttgcc
    38941 acataggcct gagcggtttc cagattcggt ttttcgacaa actgcgccac ttcaaaggcc
    39001 accgtatcct gctcacccgc agacacttca ccgcgacgaa tatagccata accgatttca
    39061 ggtagatccg gcacaatgcc aaaggtcacc agcttgcccg cttcggcata cggtatggca
    39121 ttacgcacgg cggcacggaa cgcgtcttca tcggcaatca catgatccgc cgccagcacc
    39181 agcattaacg ggtcgctctc cggactatga cgtgttgccg ccagcgccgc cagcgcaatg
    39241 gctggtgcag tgttacgccc tgccggttcg agaataatgt tctcggtgag tttgttcagt
    39301 tggcgcagct gttccgcgac aataaagcgg tgctgctcat tgcaaatcac caccgggctt
    39361 tcgcactcta cgcctttcag gcggcagatg gtggtttgca gcatggtgag atcgcctttc
    39421 aggcataaaa actgcttggg gtaaagtacg cgggaaagcg gccataagcg gctaccggag
    39481 ccacctgcca tcacaactgg atagagtttc gactgcgcca taattatccc cgaatatcat
    39541 ttataaattg acgtaacacg ttctctttat cgagcgtgcg ttcggcatat tcacgtgcca
    39601 ccgtgttgtg tttgggcagc aggagcgcct gacgaatccc cgccaccagc gcctcgaccg
    39661 attccggttc aacgcaaacc gcaatgcccg gaaaggtttc gcaaagctgt cccagttctg
    39721 tgtgggcttc tgcagtaatc accgcgttac cgcctaccgc cagaatattg gtcagtttcg
    39781 acggcaatac ggcatctgcc gcgccgcgtt tttgcaccac cagatggcaa tcgcccatct
    39841 tcagcagtgc gggtaaagcg tcatacgatt gcagcggaaa aaattgcatg ttgcgcagac
    39901 cacgctgttg cgccattttt tccagccgcg ctttgccgcc gccctgcccg acaatggcaa
    39961 aaatcagcgg ttcatcacgc aggcgatcgg cagcttcaat aacgttttcc agcccctgct
    40021 tttcaccaat attgccggag taaagaatga tttttttgtt atccggcagg ccaagctggt
    40081 tacgaagggc atcaacatcg acatctgcga catgctgaaa acgggcaatt tctgaccagt
    40141 tggggaagaa gatgacgttt tctgccgcca cgcctttttc gatggcttta ttcatcatcg
    40201 aacgcgaaat cgtggagacg ttatcgacgt tatgcagtcc gctacgttcg aacgccgttg
    40261 ccagctgtgc cactttgccg cctttgcctt ttccggcaag gcccagcccc agcatggcgt
    40321 ccacttcgta atcctgaata tgcagcacgg tacgcgcgcc agagagtttc gccagcaggc
    40381 gcattcccgg cgtgcaaaac agcgttggca ctacgccgat aatgcgatcc ggcttccagc
    40441 gacgttgcgc catcaacggg aaaaaactgc tgacggcaaa actgccgaga tgcaacaggc
    40501 gtttcagggt gctcggctgt tttggcacgt acagcgggca gcgccacacc gtagcggccc
    40561 cctcttctcg tttgtaccgc caggcggaat agttctcgcc cacctgccac tgcgggtagt
    40621 aaggcggtgc ggtaataacc cgcacctcat gaccttgcgc cgccagccat tcaaccatct
    40681 ctccggtgta tttgccgatg ccggttaact ccggcgagta gttaatgccg tagaccagta
    40741 ttttcataat ccgggtactc cggcacgctt ctcagcgaga aaataggcgc ggctgttagc
    40801 gtgaacatcg ttactggcga gcagcgcgtc cggcgtcagc cagcggtaat cgtcatgctg
    40861 ctcatccggc agtaacagat cttcttcagc gactctgaag cgaaaaccga gcaccacata
    40921 gtgagtggtg aaatccgtgc cggagaagtt atcgtcataa aagtgctgcc agacaccgta
    40981 aaactggcct gctgttatcg gtagacgcag ccccagttcc gccatcgtca gccgctcaaa
    41041 tgcggcttcc agcatttcgt ctttctgcac gcgccctccc ggcacaaacc agtaaccctg
    41101 cgccgggcgg ttggttcttt tgccaagcag aaactcgccg cgactgttct cgacaataaa
    41161 atcgagagag acaagcggag tggagcgcac taccgtggca aagtcttcct gacgtaaaaa
    41221 catcattacc cccgaaagcg gtcttgattc tcaaggaacc actggtaagt gctggcaagc
    41281 cccgcttcca gtgagatttc gtgataccag ccaagctgat gcaggcgcgt cacatccagc
    41341 agtttgcgcg gcgtaccatc cggcttgcta gcatcaaaaa ccacccgacc tttgtaaccc
    41401 accactttgg cgatggtttg cgccagctcg cggatagtgc agtcaacgcc cgtgccgacg
    41461 ttaatgtgtg acagcatcgg ctgggtgttt tccagccaga cttcgtgcgc cagctccatc
    41521 acatgaatgc tcgccgccgc catatcatcg acgtgcagaa attcacgcat cggtgtaccg
    41581 ctgccccaca ccaccacgtc cggcgcattc tgtgccgtcg cctcgtggaa gcgacgcagc
    41641 aatgctggga tcacatgcga gttactcgga tggaagttgt cgtgtggccc gtacaggttg
    41701 gtcggcatga ccgagcggta atcgcgtcca tactggcggt tgtaagattc gcacagtttg
    41761 atcccggcga ttttggcaat ggcgtaaggc tcgttggtcg gctccagcgt accctgcaat
    41821 aactcgcttc ctgccatcgg ctgttttgcc agtttcgggt agatacagga cgatccgaga
    41881 aacagcagtt tgttcacgtc gttctgatgc gcggcgtgaa tgatgttgct ctcaatcatc
    41941 atgttctggt agatgaaatc cgccggatac gtgttgttgg caacaatgcc gcccactttc
    42001 gccgccgcca gatagacctg gtcaatgctt tcgctggcaa agaaatcatg cacagcgcgg
    42061 ctgtccagca ggttcagctc gtcgcgggtg cgtaatacca gttccacatc accgcgctgt
    42121 tcgagctgcc gcctgatggc agaaccgacc atcccgcgat ggccagcgat aaaaatgcgt
    42181 tgtttactca tgcttatgac tccagcgcga tcgccacgtc gtagccgtga gatttcagca
    42241 gagagtgttt tttcgccgct tcgaggtcat tagccaccat ttcagacacc atctctctga
    42301 gggtgatttc cggtttccag cccagttttt cgtgcgcttt ggtcgggtcg ccgagcagcg
    42361 tttcaacttc tgccggacgg aagtaacgcg ggtcaacggc gataatcaca tcacccggtt
    42421 taacgcccgg cgcgtcatgc ccggtgacgg aaaccacaat gcccttctct tcaacacccg
    42481 tgccttcaaa gcgcagtttg atgcccagct gtgctgccgc catttccacg aactgacgca
    42541 cggagtactg aacgccggtc gcgataacga aatcttccgg ctgttcctgc tgcagcatca
    42601 tccactgcat ttttacgtag tctttggcgt ggccccagtc acgcagggaa tccatattgc
    42661 cgaggtacag gcacgactcc agcccctggg cgatgttggc gattgcgcgg gtgattttgc
    42721 gggtaacgaa ggtttcgccg cggcgcgggg attcatggtt gaagagaatt ccgttacagg
    42781 cgtacatgcc gtaggattca cggtagttaa cggtgatcca gtaggcgtac agtttggcga
    42841 ccgcatacgg agatcgcggg tagaacggcg tggtctcttt ctgcggaatt tcctgcacca
    42901 gaccatacag ttcagaggtg gaagcctgat agaaacgagt tttcttttcc agaccgagga
    42961 agcggatcgc ctccagcagg cgcagcgtac ccatcgcgtc gacgtcagcg gtatattctg
    43021 gtgactcaaa agagaccgca acgtggctca ttgcgcccag gttgtacact tcatccggct
    43081 gtacttcacg caaaatgcgc gtcaggttag aggtatcact caggtcgcca taatgcagat
    43141 ggaatttcgg gttgcaggtg tgcggatcct gataaatgtg atccacgcgc tcggtgttga
    43201 atgacgatgc gcgacgctta ataccatgca cctcgtaacc tttttccagc agaaactctg
    43261 ccaggtaaga accgtcttgt ccggttacac cggtgatgag agcgactttt gacatgtatt
    43321 attcctctgt atttttgaat ttattcagtt tcaacgcgtt cgcgtatcac cactgcggga
    43381 ttcccccggc aaaccacatt tgccggaagc gatttaaaaa cactgcttcg tgcacccacg
    43441 acggtgccgt cgccgattgt gacgcctggg gcaacaaaga catcggttgc cagccagcat
    43501 ttctcgccaa tcacaatagg cgtggcgtta atggtgaaat gttgacttgc atggtcgtgg
    43561 ctaccggtgc ataaataact tttttgcgat atcaccgaat gtgcgccaat ggttatttca
    43621 ccgagggtat ataaattgac gtcatcgccg acccacgcgt aatcacctaa ggttaatttc
    43681 cacggatagg taatttttac tgacggacga ataactacgt tttttcctat ttttgctccg
    43741 aataaacgta ataaaaaagc ccgccagcga tacaatactt gtggcgacca ggcaaatatt
    43801 gttgcctgta ctgcccacca taattgcact ttaatagcgt tgccgccccg gaaccctttc
    43861 ggcaccgaga aaccgcttaa atcttgcatt ggttttcctt atattcagac tttgttatat
    43921 aaggctttcg tctttgaggt agtacgttgg cgtaaatgcc aggataattc agcccaaaag
    43981 ccaggcacat gtaatatttg tcgttggact tttttcgcgt cagcacacaa ttccatatta
    44041 ttggtggtag ataccccacc catggaaaat tcagacacca ggccattgag ttttttaaat
    44101 gcataaccgg ctttatacat tttggctgcc agcgcgtagt cggaagaaac tttatattcc
    44161 aggtcataac gccatttttt caagccggat acagggaaaa atatcgcctg atgactggcg
    44221 ggcaggctgt gataaatata ccagcccggt ttggcgctac gtttaatttt atgcccgtcg
    44281 ccaaaatcca gcagcgcatc gccggtgatc atcacgttat ctttttgcat ttttaactta
    44341 cggacaaaat ttgcggcatt ctgatgaaaa atatcgcccg aattgagaaa caacgcgaac
    44401 ttgccttgtg ccatcgcaat gcctttgttc atggcgtcgt agataccgtt atctggctcg
    44461 ctgacaaagc gtaggttaaa gataccattg agattttcca gatactcacg ggtgccgtcg
    44521 ttggaaccgc catcgacaac aatccattcg aagctgatat cttccacctg cgccagatgc
    44581 gccagcgagg catgtgtttt gactatccct tcgaggttac gaaacgcgac agtgattatg
    44641 ctaagcaaca tgttcttatt cttacctcgt aatatttaac gcttttcgca aaataaacgg
    44701 acagacgatt aaaaatgcat attccgggct aaatatcgaa ccggtaaaaa acagcgatac
    44761 cggagtaaaa agatataatt gcacgcgaaa attgtggtta tcaccaaaag cgttgatcat
    44821 catttttatc actttcccca tgtaccacag tgataaaaac accgcgaacc aggaaaaata
    44881 aataatcagc agatacaaac cattgtctat ggtttttccg acatccgcac cgttaaatat
    44941 tccgaatgat gcgacatatt cataaagtga gccaaatctg actacaccgt caatatgggt
    45001 caaagaataa ccgaccatca ccagcggacc gacaatacga taatatgatg acgatccttc
    45061 cgtacctaaa tcgcccagac gggtggaaat ataaggaaac gcgattacca caccaaccag
    45121 gaatacagcc agagaaatca atgctaacgg taactttttc ttaatcgcct ctttattcag
    45181 atattgaaat gcccactcca gcaaataaaa caggataaag gtcataaccc ctgaaaacga
    45241 tccggataat attatccctg cgagaatcat agcatctgtt ttaggcgttt tgataccaaa
    45301 ctgtttgatg ctgagccaaa ttgagattaa tgccagagcg aaaaatgccg gttcgaaata
    45361 aagtgctgtc gtgcgcttgc cgccgaattt aatgaaattc agcacatagc tgttgctgta
    45421 aatcagatat ttcgaaatcg actccataat actgctgcca ccggtgagga taatttgtgc
    45481 catctccacc gccgccagcg ccaccaccag cccgaccacc agataaaaga aacgtaatat
    45541 cttgcgatgg ttgtgtggcg aaattgtttt aaaacgaata ctccacacca tgccaataat
    45601 gatcacaata tagacaaaca gcatagttga agtgacgtat ttactggcat ccagcgactg
    45661 accaaacaga tagttaaacg ccgtgagtcc cgcgccaatc cctaaggcaa tcatcaattt
    45721 tttaacgctg atgcgttcta aaaacagcag taacaagaca ggtaaaaaag tgacgatggt
    45781 gatggggaaa ctttcgccaa gctgggcgat tttgacgtta accagcagat aaatcagcgg
    45841 cagcaacagg tagctacaga ttctgataga agttgacata ctcctccagc atctgttgtc
    45901 cactgtaggc ggcgcggctg cgttggctga actcagccag cgtggtacca aatatcgcct
    45961 gcgcgatttc cggtttgctt aactgcacca gttgcagcac ctcttcttcg ctgacggttt
    46021 taccgccgga tttttgcaac acttcccgcg ccgcatcgct atgggtggca atcaccggca
    46081 cgccaatcga tagcgcctca cacaaaatca gcgggtagtt atcgacgcga gaactgaata
    46141 ccagcgcatc catctgattg agcgcgctca tcagcttacg tttgtcggtt tcaaagccgt
    46201 gattaaccac gttgccagcg gtgaacggcg agaacttacc aaaggtatgc agttcgattt
    46261 tgtcgcccag cgccatcatc tcacgcacca gttgctggtt agttttgccg tcgtaacgca
    46321 ggtcatgcgc caccacagcg attttcggct tgccctgggt ttcgcgcacc ggaggcagat
    46381 ccgccagaat cgcttcggtt gccatatcaa taccattatt gataatccgg caacgccctg
    46441 gaccgtacag gctattgaaa gcgtcagcca catgctggct gggggaaata aactgacagc
    46501 ccagcgccag catctcacgg aataactggc gtttgcccgc caccagctgg tgcgcccgat
    46561 caatcttcac cggcggatag ttatttaagg tcgggcattt ctggcagccc gttttccagc
    46621 cttcacaacc gtcggtaaag gcgcagcgtc cggtaacgct ccagtggtcg tgcagcgtcc
    46681 agaccagagt gacgtccggt ttatggtttt tcaccttttc gcaaaagcgc accacgctct
    46741 taagatttag ccagtagctg tgcagcacat gaaaatgcag gaccaccgga cccggtgtac
    46801 gagtaatggt gcgatataac tcattgaaat tgccaaacag atcgcgatta aacagacgaa
    46861 acaggacaat attcgccatt gcagtcatcc gcggcgtatg tttgatgacc tgcggatagt
    46921 tttgatggct gacgctctct ttgccgcctt tgccgtaacc gtagacaaaa tgtgacgcaa
    46981 gcccctgttg cagcgcacgc tggtggagat ctaacgccac acctgctgcc ccgccttccg
    47041 ccagtcgcac attaaattgc aaaatattca tttaattacc ttcactcgcg ctttttctcc
    47101 caccaccagc gcgttgtccg ggacagagtc gagcaccacg ctgcccgcac ccacggtgac
    47161 gttgttacca agcgtgatat caccaagaat aataacgttg gcaccgagtt cgacgccgtt
    47221 gccaatatgt ggacatgcca tgttatcggc accacgattg ccgatagtga cgccgtggcg
    47281 aatggtgaaa tcatcccccg ccaccacgtt tttattgatc actacggcgt aaccgtgatg
    47341 gatagtaaag cggcggccaa tggtcgcggc agcctggatt tcataaccga aaaagcattc
    47401 ggtgataatg cgatacagca ccagcagagg ggccgcccaa atattgttga ggacgttctt
    47461 tttgcgccac accgaacaaa aatgagcgac gcgatacgct agaaccatgc agcacggacg
    47521 taaactccag ctgttggcgc gcagatcttc cagcatcttt agcgcccccg aataccatca
    47581 gccagacgtt tgccgttacg caccgacagc agcgtcagca aagtgcgcca ggtcatacgt
    47641 ttattgcgga tctggtagag ggtaaacagc tgatattttt tgctggcgcg gtcaaatttg
    47701 tctttgtgct tgcggtaaaa gtggaagtat ccggagaatt ttttcggtga cgaggtgatc
    47761 tgcatttcac cgtgattgat atgcaggatc tgcgtcgcct cttccacttt ccacggttcg
    47821 ccgtactcca ccaccatccg caggaagatg tcgtaatcct gtgccgcttt cagttcggta
    47881 tcgaacaaac actctttgaa acgccatgcc caggtaaaga cctgattgcc aatgatattg
    47941 cgtttataga acaggcggcg tgagtacggc gatttgggat acagtggtaa gcttgccggt
    48001 tgggaataaa cttctccctg gcaaacgtag tcgttagcgt acaaaaaggc gtgagtgacc
    48061 agttgctgtt tatgggcgag gaagacgctc agacggttgg gtgtccattc atcatcatca
    48121 tcgatcccgg taatgtattc cccttgcgcc agcataatag cctggttacg taccgcgcac
    48181 gccccgctgt taatgtcgtt gtgaatgtaa gtgatacgcg gatcgttgag ggcggtgacg
    48241 tactgttgca gttgttccca ggaggtggag caatcatcca cgatgatcat ctcccagttg
    48301 ctgtagtcct ggcgcaagac cgattttatc gcccgaatcg ccagttgttg gcggttccag
    48361 gtcggcatat agattgagat cagcggattg tctttcatag gttgttctcc cggagtgtcg
    48421 agatgttctg ccggtttata agcttgttta cgggttctgt tgccggatgc ggcgtgagcg
    48481 ccttatccgg cctacggagc tggtttgctt gccggatgcg gcgtcaacgt aggtcggata
    48541 agatgcgtca gcatcgcatc cgacaacgga tctcgttatt tcgcatccga cttatattcg
    48601 tattcgtaat agccataatc ctgatacgcg ctggcgcggc ggaagatgga gttcagaatc
    48661 acccctttca ccggaatacc gttttgctca aagcggctca gactggtttc cacttctttc
    48721 aatgtgttga ccgcataacg cgccaccatt aatgtggttc cgacatgacg accaacaatt
    48781 gccgcatcgg tcactgccag aatcggcggc gtatcaatca acaccaggtc atagttttta
    48841 ctcgcccagt tcaccagttc ggcaaagcgt tcgctcatca acagttcaga aggatttggc
    48901 ggcacctgac cgcgcgggat caggtcaaat ttggcaatag aggtcggttt agctgcggta
    48961 gtaatatcgc cctgaccaat cagaatttcc gacaggccat tgacgttatt ggtgcccaac
    49021 agctcgtggg tgtagccttt gcgcatatcg cagtcgatca acaacacgcg tttattggtc
    49081 tggctgatca ccgccgccag gttggcgcag acaaaggttt taccaattga cgggctaacc
    49141 ccggtcatca tcaacacatt gttctgtgcc tgcatcatcg cgaagtgcaa actggtacgc
    49201 agactacgga tggcttcaat cgccagatcg gttggattcc ccaccgccag tagctggctc
    49261 tgtttatagc gtttaatccc tttgatggtt ttgacgctat cacgcgcttt ctgccattcc
    49321 gacagcggga tgctggcata gacgctaata ccgtgttctt ccagtacttg cgggctttca
    49381 atgccgcgat taaacaacga gcgcagcagc acacccacga tagaaagcat caggccaagg
    49441 ataatcgcgc cgaggataat cagccctttc ttcggtttta gcacgccagg ctgggtgatt
    49501 gccgggtcaa caatgcgcac atcgccgacg gtgctggctt cggtgatttt cagctcctgc
    49561 tctttattca gcagttgcat atagacctgc tgaccagact cgacatcgcg ggtcaggcgc
    49621 acaatctcct gctgggtttt cggcatcgcc gttacgcgac cgttaagttt ggctttctct
    49681 tcttccagcg cctgacgttt ctccagcagc gtgcggtacg ccgggtgaac tttggtgtac
    49741 agcttggaga tttccgcctc tttaaaggtc agttcgttca actgcgcgtc gatgttcacc
    49801 atcgaatcga gcaccgcttt cgcttccagc ggcagatcaa cagaatcttt atcctgacgg
    49861 aaggcattca gtttgttttc ggcaacatcg aggcggctac gtacttccgg taactgttgc
    49921 gcgaggaaag cgaggctttt cgacgcttcc gccgatttgc gctcaatatt ttgttcctga
    49981 tagttacggg cgatgctgtt aagaatgtcg cggatctgtt cgcgatcttc accggtataa
    50041 gtcaggctca gtacgcctgc gtctttgccg ttctccgtta ccatcaggct gttttgcagt
    50101 tggttgatca tccccaacgt ggagtatttg gtgacggtaa actcactgcc cgggcgggcg
    50161 tgaatggctt caaccatcag cgtgacgcct tcttttttca gcatctggcc cgcttgccca
    50221 cgggcgctaa agccgccatc actgctcagg gtgtagtttt tattgtccag cacattaagc
    50281 gtaaacacct agtccgccat ctctttcggg cggttaaagg tagtcacttt caccgtctcg
    50341 ttctggcgtc ccatcagtcg atcccagccc gccccgaaaa tcgggaacgt gtttttgctc
    50401 actgcaatat cgaggtcgag atcgtccacc gttttaccaa gcaccagacg cgaacgaatc
    50461 aactggatct cggcgtccga tgcaggcggt ttgttggcta atgccgaacc aatgtcctgc
    50521 actaacgaat tgccgctgtt ttgctcgatt tgtaccagtg cgtcggcact ataaatcggc
    50581 gtggcgaaga aggtgtaaac cacggcacag aggacaaata cagcggtgat gccaatcacc
    50641 caccagcgcg cttcaatgac ggtgccgacc aggcgaccaa tatcgatttc atcactgccc
    50701 gttaccggag cggcatgttg ttttactttt tctgtcattc ttatacctgc tctgcgttca
    50761 atgcctgcgc ccactggcgg gcagaccgtt caagtaatgt gtacaccgct gcaaacgttt
    50821 cccagctttt gcgatacgga tcggggattt cacattcgtt atcccagtga ccaaacagca
    50881 tcactttgcc gcgcatctca ggtgccatct cgcataagcg ttcgatatgg cgcttttcca
    50941 tggtcaaaat caggtcatag ttgcgacaca ggcggcggct gatttgtcgt gcacagtggc
    51001 cttccagaga cagttgatgt tctgcggcga cgctgatagc ggtaggatca gcgcccttac
    51061 cgaccagcgc gccgagtcca gcggactcca ctttcagttc cgggtgataa cgttgcagta
    51121 agcgttccgc cgtcggggaa cggcaaatat tgccgacaca gacaactaat atgttgttaa
    51181 acatgacgat taccagttat gaatgtcgct ggctgtatcc gtcatgtaac ggacaccgct
    51241 aatagttggc agcaactgat tgatcagacg gttccagcgg gaaaccgggg cggtggtgac
    51301 atacaccacg tcataaggtt gcaggcggaa ttctgtcgcc atcaccagcg acgtggcatc
    51361 ggacatatcc agctggtaga tattggcaat cttgccgtta cgcccgccct cgcctttcag
    51421 cggacgaatg acaaagatgc cgctggcgtt ggaggtggtc atgtcgatac cttcagcatt
    51481 acccagggct tcagtcaggg tcatgccgct aaagtccatt ttcagggtgc tctgtttctt
    51541 cacttcaccc atcacaaata ctttcagatc atcattacgc ggcacgtaga gaatatcgcc
    51601 gggataaagc agtcggttct gattgaggtc gccgttttgc atcagcacct gcaaagaaat
    51661 gcgttcttca cgaccattgt gtgttagcac cacgttgcgc cagtcagcgg tgtcggtcag
    51721 gccacctgcg gcgttgatgg cgtcgagaat ggtcagtggt acgttggtga tcgcctgttg
    51781 accggattta ttcacctgac ctgagatata ggtcttttgt gagcggaagg cggcgatatt
    51841 aacgtccacc tgcgggtcag cgatgtacgt cgctaagcgc ccggtaatat cactgcggat
    51901 ttcagcgagc gttttcccga ctacgtgaac cttgccgata tacgggtaaa acatagtgcc
    51961 gtcaggctgt acccagttgc cggtgtcgct ggagctgcgg tactgaccag ctggcgtggt
    52021 gagttccggg tgatcccaga cggtgacatt aagaacgtcc cccggcccga cgcgatactg
    52081 gtaattcgcg atctcgcttt ccagcgtcat attggggcgc gctacattcg gacgtgggcg
    52141 taattggtca atcaggcgcg gggtcagcgg ataaacattc accattttgt cgagatcgaa
    52201 atcagcgtcc tgctgtttga tgacgtcttt gcccatcgtc gacatattgc tgcccggaag
    52261 tactgtgcaa ccgcttatca aggttactga caccaataat ggcatcaatt tcattttgga
    52321 tttcatcatt gtttatttat cactttggca gagtaattat cctgtgcact attaatagca
    52381 atgtcgccat gcacatttac cttgcagtta attgaataca aatttaactg gcatcagtcc
    52441 taaaaaaatt gatttcatcc gcaggctatt gacagaataa ttcagactgg tctttcaggc
    52501 atccagacac gctaccgccc ctggcttttt agccaccaat acactgattt agcttaattt
    52561 tttaaaccct ctctgcatac aatcgttgat gagaaagggt tattgcggaa attaacttcc
    52621 gaatataagg tgacattatg gtaattgaat attggctctc caataatgca ggaggaagtg
    52681 ttacagctaa cggaatagca ggcaaggtaa caattcggca attggctatt tttaagaatt
    52741 atattaagtg tcattcaata tggtttttag gagtttcttt aggttgacaa tatttaatat
    52801 tgcgcctccg catgcgatat ttcttaaata atgttttatt attaccactt ttaattcagg
    52861 gataatgtga ggttattacc ctcaaataat atgagataaa tagtgctgca acattgcatt
    52921 tttgccccga tttatccatg atcgaattgt gacatttgtc atacaacgaa taggttttgt
    52981 acttactatg gaatggattg ccgatccgtc tatctgggcc gggttaatca cgctgattgt
    53041 gatcgaactg gtcctcggca ttgataacct ggtctttatt gccatcctcg ccgaaaaact
    53101 accgccgaag cagcgcgacc gcgcacgggt taccgggctg ttgctggcga tgttaatgcg
    53161 cctgttactg ctggcgtcaa tctcctggct ggtcaccctg acgcaaccgc tgttcagctt
    53221 ccgctcgttt acctttagcg cccgcgactt aatcatgctg tttggtggtt tcttcctgtt
    53281 gttcaaagcc acgatggagc tgaacgaacg gctggaaggg aaagacagca ataatcccac
    53341 acaacgcaaa ggtgcgaagt tctggggggt ggtgacacaa attgtggtac tggacgccat
    53401 cttctcactc gactcagtga ttaccgccgt cgggatggtc gaccatttac tggtcatgat
    53461 ggccgccgtg gttatcgcta tcagcctgat gttgatggcc agcaagccgt taacgcaatt
    53521 tgttaacagt cacccgacca tcgttattct ctgcttaagc ttcctgttga tgattggctt
    53581 tagcctggtg gcagaaggtt tcggcttcgt cattccgaaa ggctacctgt acgctgccat
    53641 tggtttctcg gtaatgatcg aggcgctcaa tcagttggct atctttaacc ggcgacgttt
    53701 tctttccgct aaccagacgc tacgccagcg gactaccgaa gcggtaatgc gcctgcttag
    53761 cgggcaaaaa gaagatgcgg aactggacgc cgaaaccgcg tccatgctgg tggatcatgg
    53821 taaccagcag atctttaatc cgcaggaacg gcggatgatt gagcgggtac ttaatcttaa
    53881 ccagcgtact gtcagcagca ttatgacgtc gcgccacgat attgagcata tcgatctcaa
    53941 cgcgccggaa gacgagatcc gccagttgct ggagcgaaat cagcatacgc ggctggtggt
    54001 taccgacggt gatgacgcag aagatttgct cggtgttgtt cacgttatcg acctgctaca
    54061 acagtcactg cgtggcgaac cgctcaacct gcgggtgttg attcgccagc cgctagtgtt
    54121 cccggaaacc ttgccgttgt tacctgccct ggagcagttc cgtaatgccc gcacacactt
    54181 tgcttttgtg gtggatgagt ttggctcggt ggaagggatt gtgacattaa gtgacgtaac
    54241 tgaaaccatt gccggtaact taccgaacga agtggaagag atcgacgccc gccatgatat
    54301 tcagaagaat gcggacggtt cctggacggc gaatggtcat atgccgctgg aagatctggt
    54361 gcaatatgtg ccgctgccgc tggatgaaaa acgtgaatat cacaccattg ccgggctgtt
    54421 gatggaatat ttacagcgta ttccaaaacc tggcgaagaa gttcaggtgg gggattattt
    54481 gcttaaaacg ttgcaggtgg aaagccatcg cgtgcagaag gtgcagatta ttccgctgca
    54541 taaggatggc gagttggagt acgaggtgtg atggtatcgg tcattttacc caatagccga
    54601 aaggaataag atgagggaac cgcgccagcg gcgatttacc gccgggagcc cgggttgcca
    54661 gggtggtggc gattgagccc ccctggcacg ttcaccggct tgagcgttcc atagtagcga
    54721 ggaacatcaa gtgaacggaa cagccttcga tcttacatat tcagaatata atgatgccgc
    54781 cacgaacgcc tgatgcgacg ctttacgcgt cttatcaggc ctacaggaca ggtcaccagg
    54841 taacctacat cttctccagc aacttcttca catctttgcc attgcgggaa tctttattcc
    54901 gctcggccca gtcattcaga cgacgtttcg cttcgtcctg tagatgtttg cgcagtaact
    54961 gatccacttg cagactgtaa ttgagttgct gccagttgcc ataaacccgc agcggtactg
    55021 gcgtttcttt aaggaaatca atcagtttgc tttccccgtt ccagccaccc acgacccgaa
    55081 tatcaaactg ggtgtcgcag gtttgctccg ccagattcaa cgtaccagcc ccggaaagcg
    55141 ccagcacagg cgattgacct tgcatgtcgt ttaacgtcac gacgccatcc ttcaacgtca
    55201 aatcggtggt aaagcggtca agacgcgtta cgttatcgaa gttttcagcg gccttcacat
    55261 caccaccatt acgttctacc gcttgctgaa tcatctgctg gaagttcatc ccttccatgc
    55321 gcgtgtcggt catttcgaca tgtgcctgtc cttgccagtt gtggcggaat gcgtcggcat
    55381 ctatgtcagc accggagaaa tcaccagcca gtgacatctt tccggtcaac gaaatcggat
    55441 agttaaacgc cttcagaatg gtgccaatct caacgttttc cagccgtggc tggaagttta
    55501 tccgcggatt tattgatgtc gcgtccagcg tgcccggcag tgaaacctgt ccaccgttaa
    55561 gcttgccctg cagttgagta atttccagca aacccgactt gttggtcatt tgcgtggcaa
    55621 catctgtaaa attcattccg cgccagcgca cgttactggc ctgcaacaaa atatcagccg
    55681 taaagccttg cagtccctga tatgccggtt catcaatacg cgaagaaatg accgggcgcg
    55741 gcaacgttga ttggctctgc ccctgctgcg cggcaccgtt ttcaccattc gctgtttcat
    55801 taagcgggat gaggttgtca agattcagtt gcgggaattg cagtctcagc tgccattccg
    55861 gtttctctgt cagcgtgacc tgtgcttgcc cgctcagcgt actgtcattg gcggtcaaac
    55921 taatttggtt aaatgaaagg cgtttatgtg actcctgcca ctgggcctgg aaactcccct
    55981 gcccatgaat accttgtttt ggtaaatctg caccctgcaa ctgccagtta atttgttcaa
    56041 tagccgccgt taaatcatgc ggataatcag aagcatctac cgtaccgtta agggatatcg
    56101 tgagatcgcg ctgatcgcga ttaacccgcc cggagaactc aaatgaacca cgatgttggg
    56161 gatcttgttc catttgcagg cgaatattgc ggattgtcac ctgctcgtca tcttcatgct
    56221 ggaacaccag cacgctgtcc gccaccttaa gactggatat atcaaacgac catccgcgat
    56281 cgtctgacag atccggcaag gtattgtcgc gcggtgcaac cggagcgtct tcactgcgca
    56341 ccacttccgt ctgcggcgtc agttggatca ctgccccttt tagcatcacc tgcttaacgc
    56401 tcagttgatg actcagtagt ggtaaaagcg ccacgtccag acgcatgttg tcggcgcgaa
    56461 ccagtggctg gctcgcgccc tgggcggtga gagacattcg cccggagagg atactaagct
    56521 gcggccagac gtgccaacgc agtggcccgt cgagctgcaa ttgataaccg ctacgtgcag
    56581 caacttgctt gaccatatag ttgcggaaat cattcggatt caccagcaac actaacgcag
    56641 ataacccggc caccagcacg accaggagta tcatcagcgt cgtcagaaat cgtctcatgg
    56701 tatcctcaat gggcctgaat tagtctttat cgattcggct ggctaccgcg ccctgctggt
    56761 tgcgatattt cgcatcttca cggcggttgt aaggtcgcgc cgccgggccg gaaagcggct
    56821 caaagctcag cgcaccaatt aacatgcccg gacgcagcgc cagcggcagc ttaccggagt
    56881 tgtagaactc cagcacaatg caaccagacc agcccggatc gatacggtgc gcggtgacgt
    56941 gcaccatcag ccccagacgc gccaaagagg aacgcccgtc cagccagccc accagatcgg
    57001 ctggcagcgt caccgactcc agcgtcaccg ccagcgccag ttctcctggg tgaagataga
    57061 acgcctcgcc ctcgtcgaga acgatctcat cgctcatcac gcggtcaagc gcggcgctca
    57121 cttcatcttt gggaccgctc agatcgataa acgctgccgt gtgaccacgg aaggtacgaa
    57181 atttattgcc caggcgtaca tccaccgtcg cgccgttaat acgctccact ggcggacgtg
    57241 ggttgatcga caaacggcct tcatcaagcc aggcttcaat atctcggtca cacagacgca
    57301 tggcattttc tcctttcgcg catcactccc ttaacgccaa ttacgtcaag ggcataccag
    57361 gttatcactg aacggtacac aatttatcaa gcttattcaa agaactgact tattttcgct
    57421 ttcaatatat cgatcgcgat gcggtttttc ccgccgcgcg gcacgataat gtccgcatat
    57481 tgtttagaag gctcaatgaa ttgcaggaac atcgggcgca cggttttttg atattgcgcc
    57541 atcacggaat ccattgaacg cccacgctcg ttaacgtcac gcttgatgcg gcgcatcagg
    57601 cagatatcca gcggggtatc aacgaaaatg gagaagttaa gttcgtcacg caaacgcgca
    57661 tccgtcagca acaaaatgcc ttcgagaatg atgaccttct tcggctcaac cgtcaccgtt
    57721 tctttcatac gcgtatgttc aacatagctg taaaccggca ggtcaattgc cgagccgcgt
    57781 ttcaacgctt gtaaatgctc aagcagcagg ttgtgatcca tcgcgctggg atggtcgtag
    57841 ttggtcttaa cgcgttcttc catcgacaga tggctttgat ctttgtaata gcagtcttcg
    57901 ggaattacgc cgatgtgttc atcaccgact tgctcacgta attcacgata aagggtactg
    57961 gcaataagac tcttgccgga agccgatgcg ccagcgatac cgataatgac gcactgatga
    58021 gactgatcag tcatatattt agcgacctga ttaacctgga tgttaggaag ggggcgacga
    58081 agcgccaaac gcggcaatta tagggatttc atccgcctga taccagtcga atagcgttgc
    58141 cgcgcgctca gagttaattg ttgacaaaga attcccggtg gcaaattacg ttgatcagtt
    58201 ttatgtaagg taaaaaatgt tatacgcagt tgcgcaaatt atccgccttt acgtcacttt
    58261 atgagcaatt cacatataaa atgtaaaact tttgtactag cataaacaca gaaacgaata
    58321 ctggcgacct ggtcttgcgg ataaagcggt aatgagcaaa caatcacagc atgtattaat
    58381 tgccctgccc cacccactgc ttcacctggt cagtttaggt ttagtctcgt ttatctttac
    58441 ccttttctcg cttgagcttt cgcagtttgg cacccaactc gccccactgt ggttcccgac
    58501 gtccatcatg atggtggcgt tttatcgcca tgccgggcgc atgtggccgg gaattgcgct
    58561 gagctgctcg ctgggaaata tcgccgcatc catcctgctt ttttccacca gctcgctgaa
    58621 catgacctgg acgaccatca atattgttga agccgtggtc ggggcagtgc tgctacgtaa
    58681 attgctgccg tggtataacc ccttgcaaaa tctggctgac tggctgcgtc tggcattcgg
    58741 cagcgccatt gttccgcctc tgttaggggg tgttctggtt gtcctgctga cgcccggaga
    58801 cgatcctctc agggcatttt tgatatgggt actgtcagaa tccatcggcg ctctggtact
    58861 ggtgccgctg ggattgttat ttaagccaca ctatctgctg cgccatcgca acccacggtt
    58921 actttttgag tcactgctca cattagccat cacgctgacg ttaagctggc tttctatgtt
    58981 gtacctgccg tggcctttta ctttcattat tgtgctgttg atgtggagcg ccgtgcgcct
    59041 gccacgaatg gaagcctttt tgatcttcct taccacggtg atgatggtgt cgctgatgat
    59101 ggccgcggat ccctccctgc ttgctacgcc gcgtacgtac ctgatgagcc atatgccgtg
    59161 gctactgttt ttgctgatcc tgctgcccgc caacatcatg accatggtga tgtatgcctt
    59221 tcgtgcggaa cgcaaacaca tttccgaaag cgaaacccgc tttcggaacg cgatggaata
    59281 ttccgctatc ggtatggcgt tagtgggcac cgagggacaa tggctgcaaa ccaacaaagc
    59341 gctctgccag tttctcgggt acagtcagga agagctgcgc ggactcacct ttcagcaact
    59401 gacctggccg gaggatctca ataaagatct ccaacaggtt gaaaagctga taagcggtga
    59461 aataaacacc tattcaatgg aaaaacgcta ctacaaccgt aatggcgatg ttgtctgggc
    59521 gttgcttgcc gtctcactgg tgcgccacac ggatggcacg ccgctctatt ttatcgctca
    59581 gattgaagac attaacgagc taaaacgcac cgaacaggtg aatcagcaac tgatggagcg
    59641 catcacgctg gctaacgaag cgggcgggat tggcatctgg gagtgggagc tgaagccgaa
    59701 tatttttcga gctgtatgaa attcctccgc atatcaaacc gaactggcag gtgtggtacg
    59761 agtgcgtgct gccggaagat cgccagcatg ccgaaaaagt gattcgtgat tcgttgcaat
    59821 cacgctcgcc ctttaagctg gaatttcgca ttaccgtaaa agacggtatt cgccatatcc
    59881 gcgccctcgc caaccgggta ctgaataaag aaggcgaagt cgaacgcctg ctcggcatta
    59941 atatggatat gaccgaggtt aaacagctta acgaggcatt gtttcaggaa aaagagcgcc
    60001 tgcacattac gctggattcc atcggtgaag ccgtggtctg tattgatatg gcgatgaaaa
    60061 ttacctttat gaatccagtg gcggagaaga tgagcggctg gacgcaggaa gaagcattag
    60121 gtgttccgct cctgacggtg ttgcatatta cttttggcga caacggacca ttaatggaga
    60181 acatttacag tgccgacacc tcacgttccg cgattgaaca agatgtggtg ttgcactgcc
    60241 ggaacggcgg cagttacgac gtgcattaca gtattacgcc gttaagtact ctggacggca
    60301 gcaatatagg ctcggtactg gtgattcagg acgtcaccga atcacgcaaa atgctgcgcc
    60361 agctgagcta cagcgcctcc catgatgcac tgacgcatct cgccaatcgc gccagttttg
    60421 agaagcaact gcgtatcctg ctgcaaacgg taaacagtac acatcagcga catgccctgg
    60481 tgtttatcga tcttgatcgc tttaaagcgg tgaatgacag cgccgggcat gcggcgggtg
    60541 acgctttact gcgcgaactg gcgtcgttga tgctgagtat gctgcgctcc agcgacgtgc
    60601 tggcgcgact cggtggtgat gaatttggtc tactgttgcc agactgtaat atcgaaagtg
    60661 cgcgttttat cgctacacgc attatcagtg ccgtgaatga ttatcacttt atatgggaag
    60721 gccgtgtgca tcgggtaggt gccagtgccg ggattacctt gattgatgac aacaatcatc
    60781 aggcggcaga agtgatgtcg caggctgata tcgcctgtta tgcctccaaa aatggtggac
    60841 ggggccgggt gacggtttac gaaccacagc aagctgccgc acatagcgaa cgggcggcga
    60901 tgtcgcttga tgaacagtgg cggatgatta aagagaatca gttgatgatg atcgcccacg
    60961 gtgtcgcttc gccgcggatc ccggaagcgc gtaatttgtg gctgatttca cttaagctct
    61021 ggagttgcga aggcgagatt attgatgaac aaaaatttcg tcgtagcttc agcgatccgg
    61081 cacttagcca tgctcttgac cgacgggtat tccacgaatt tttccagcag gccgcaaaag
    61141 cggttgccag taaaggcata agcatcgccc tccccctttc cgttgccggt ttgagtagcg
    61201 ccacgctggt gaatgatctg cttgagcagc tgggaaatag ccctctacca ccacggttat
    61261 tacatctgat tattccggct gaagcgattt tagatcacgc agaaagcgtg caaaaactgc
    61321 ggctggtggg atgtcggata gtgctcagcc aggtgggccg cgatctgcaa atcttcaact
    61381 cgctgaaagc gaatatggca gattacctgc tacttgatgg tgagttatgc gccaacgtgc
    61441 agggtaattt gatggatgag atgctgatta cgattattca ggggcacgct cagcgactcg
    61501 ggatgaaaac catcgccggg ccagtcgttt tacccttagt gatggatacg ctttctggca
    61561 tcggcgtcga tctgatttat ggtgatgtga ttgccgatgc ccaaccgctg gatttgctgg
    61621 tgaatagcag ttatttcgcg attaactgag agagcgtttg cccattgcct gatgcgacgt
    61681 atcaggccta caattcgtcc gttccgtctg gttgccagcc ttccgtatac cagatatgca
    61741 acagcgcata agaacgccag ggcttccagc gctcggcata acggcggatt tgtgccggtg
    61801 tcatccccgg aaatcgctgt ttaatcagat aatcatccgg cagaaaaaca tctttcgcct
    61861 gccagccacg caaagcgaaa taattcgccg tccagcgccc gatacccgga aaagtttgca
    61921 gcgttttcat cgcctgctcc acatcgcccg gaattgtcat tggtaagctg ccctccagcg
    61981 ccgcatttgc cagatgaatc agtgcctctg cccgtttcaa cggcatgcct aacgctttta
    62041 atgcctgcgg gtcggctgct gccagccgct gaggcgtggg gaagcagata tactccggaa
    62101 aatcatccag ccgttcgcca taaagctgta caactttggc agtcaatttt gccgccatcg
    62161 ccacgctcac cagttggcct aaaatcgccc gcacaccctg ctcaaaagca tcaatacagc
    62221 cgggtaaacg caatccgggc cgcgccgcgc ctaacttgcc caacgcaccg ttaacaatct
    62281 gcgggttaca ttgcagatca aacaggcggc tcattttcgc cagacactca gcggcaacgg
    62341 gttctaaacc tgcacttaaa tttatgtgca gagtatggcg ggctatatcc ggaatagcag
    62401 tcaccacgcc gcgatattcg cccaccgcca gactacgggc ataataatcg tcagcgaccg
    62461 tttccacacc actcactgca cgggcggcga gaaatcccaa catccacgac cagtcatacg
    62521 gcggctgcca gttcagggta tacatcgcat ctccttattc atccgctttc agcataaacg
    62581 ttattcagac gctacgcttt gctttcatat tccggttgtc gcgacggcaa catttcgcta
    62641 aagtcacgcc ccttcttcac cggcatgggg attatttcgt gtttattggt tttgattacg
    62701 gtacagcaaa ctgttcagtg gcggtcatgc gtgacggtaa accgcacttg ctaaaaatgg
    62761 aaaacgacag cacgctgctg ccttcaatgc tttgcgcgcc aacgcgtgaa gcggtaagcg
    62821 aatggctgta ccgccatcat gacgttccgg cagacgacga tgaaacgcag gcgttgttac
    62881 gacgggcgat tcgttataac cgcgaagaag atatcgatgt tacagcgaaa agcgtgcagt
    62941 tcggtctttc ctcactggca cagtacattg atgatccaga agaagtgtgg tttgtgaaat
    63001 caccaaaatc gttcctcggt gccagcggct taaaaccgca gcaggtagcg ctgtttgagg
    63061 atctggtctg cgcaatgatg ttgcacattc gccagcaggc gcaggcgcag ctgccagaag
    63121 cgattactca ggcggtgatt ggtcgcccga tcaacttcca ggggctgggc ggcgatgaag
    63181 caaacgccca ggcgcaaggg attctggaac gcgcggcgaa gcgtgccgga ttcagggacg
    63241 tggtattcca gtatgagccg gtcgcggctg ggctggatta cgaagccacc ttgcaggaag
    63301 aaaaacgggt gctggtggtg gatatcggtg gtggtacgac tgactgttca ttgctgctga
    63361 tgggaccgca gtggcgttcg cgtctcgatc gtgaagccag cctgctgggt cacagtggtt
    63421 gtcgtattgg cggtaacgat ctggatatcg ccctggcgtt taaaaacctg atgccactgc
    63481 tgggtatggg tggcgaaacc gaaaaaggca tcgccctgcc gatcctgccg tggtggaatg
    63541 cggttgccat caacgacgta cctgcgcaga gtgatttcta cagtagtgcc aacggtcgtc
    63601 tgcttaacga tctggtacgc gatgcccgcg aaccggaaaa agtggccctg ttacagaaag
    63661 tctggcgtca gcgtttaagc tatcgcctgg tacgcagcgc agaagagagc aaaatcgccc
    63721 tttcaaacgc tgcggaaacc cgcgcctcac tgccgtttat cagcgatgaa ctggctacgc
    63781 tgattagcca gcaagggctg gaaagcgccc tcagccagcc actggcgcgg attctggaac
    63841 aggtgcaact ggcgctggat aacgcccagg aaaaaccgga cgttatatac ctgaccggcg
    63901 gtagcgcccg ttcgccgctg attaaaaagg ctctggcaga acagttgccg ggcattccga
    63961 ttgcaggcgg cgatgacttt ggctccgtca ccgccgggct ggcacgctgg gcggaagtgg
    64021 tatttcgtta aaagaaaatg gctcagcagc ggcttaaatc tgcctgcgcc tgagccagtt
    64081 tttctgccgc ctgacgtaac ggttccatca acggcatggt ccgtgctgga gcataaaggc
    64141 ggaatcgctg caactctgtc gcgccgacag tcaacgccga ttccagccga tgtcgtttgg
    64201 cggccattac cgcctgtctg tctgctggcg ttaccgcttc gttcggcctg aacacaaaac
    64261 ggcggtcaca gctcgctttc cagtcgataa ccgcctgggt cagatggtcg ccaaaccctt
    64321 taacttgctt aacgccacga cgggtaacat ccgctgctgt ttcaatacca aaagaccgta
    64381 acgccgcttt acgcgcaggg ccaacgccgg gaatagaggc aaaaaatccc tccagaaact
    64441 tctgcttctg ccgttccctt gcggtgtcat aaagtgctgc cagagcgcgt ttctcctctt
    64501 ccggtaaccc gagaatttcg tccttcattt tttcgagcat cgcccgtttg gcgataaaac
    64561 cttccagccc gcccaactgt tggatctggc tgactaaatg ctcatagtcc attttcgcgc
    64621 gattaaatgc ctcacggcgt tgctggattt ctgctttgta cgctttgctt gtcagactgc
    64681 caataatcca gatagccgac agcacaggaa ccaaaataat ataacgcggt tctgcctgaa
    64741 ggccgcaaag caacagcgat aacgctgaca gtgcgatctc aatcagaatg atgtattcgc
    64801 gccgtaacag gcctaaagga agcggcctgc cagtcggttg gaaatgatcg ggtaatggca
    64861 attgcaatgc tggcggtgct actgacgcca tcaccatcgc ccagactttc gccagcacaa
    64921 aatcaccgct ggtggtaatg acctcttcac cgagatcaac aaaatagata acgccttgat
    64981 tatccagcgt acaccacggg cagtcggtca aatgagcggg ataaacatgc attgccgaaa
    65041 cgggacattt ctttaactgt tggcgcagag aatcaagtgc cgctacccac gctttagccg
    65101 tcggacgccc ggttgccacg ccactttccg tgaatgcctg ctgaaacatg gcttcaacat
    65161 cactcggtaa catcgatagc ggaatcgatc gtggcggcgg ttttaaacca cgtcgctgat
    65221 tatctgacgc gtaggcataa cggaaatggg taatatccgt ctccagcgca ttacccgcat
    65281 cagagataag cggcacacca gaataaggat gccggccacc aaacaagacg tgaaaaatca
    65341 gcaacgcaag gccaaaatta tcgtgatttt ctgtgcgttc aaagccgaca aatgacgaca
    65401 aggtttgtag ctctggcggc gtaaaatgcg acacgccgac ttcgcataaa tgcagtgtgc
    65461 cattgacgtt aatctgaaag gagtcgctat caatcagtac cactttgctg tcgcgaccta
    65521 ccataaaact gttctggttt acgtcaccca cgacgtgccc gtgctcgtga accgtagcaa
    65581 aagatgaagc aatattgcgc gcaacataga gtagaaaatc ccacgcacaa tgagggtaac
    65641 tctggcgacg atgtgccggg ctatagatca tatgaatcgg ttctttacca gaaacttttg
    65701 gcatcataaa accgataact tttccgcctc gtccaccgtg aagcgttgcc tgcggccagg
    65761 cgacataatt caacaactgc gcgtcagctg tcgcagccat aaaggcaagt ttgtcctgtt
    65821 ttgaggcggg tggcggcgtg tgataaatct tggcgacgct atcgacaaac tcctcgatat
    65881 cataaaccgc gccttcaccg cctttgccca gttcacggcc tggcgtaacg cactcaccag
    65941 tagcagtata taaagtgggt ttcatggtaa ccacagcgcc agtgccaacg ttttatcatc
    66001 atccgtacgc tcgtttaccg ccgggctgga caaaaactgc tttaacaatt caggtaataa
    66061 atcgagttgt tcctgcgtta ctgacgccag tccattgaaa aacggggtaa agaaaggcac
    66121 atgaggagaa ttatccagca tatttaacgc cagccgctga ataccatccg taaatgctgc
    66181 aactttatgc gcacgcccag tgctggtgaa agtttccagt ctggaaacgg catcttcgtc
    66241 ggtaatgaag tgcgtcatgt tggcatattc acccaccatc ggcgtgagag gcaattgcag
    66301 accgtgaccc aaatctacca ccacgccgcc atcgccaatc tgcataatca aggtgccgtc
    66361 aggcgatgaa atcaatccca gaaacgtgca ggcaaaatcg cgaactgcta atgctttggc
    66421 ttctgcctcg gcaaaaagtc gttgacgaat agtcagtacc atatttgtgg cgaggacatc
    66481 attaagcccc aattcaccgt cctgtacttt ttgcaccata aacgccatcg cttcattgac
    66541 ggcgagcgtc gcgccttctc ctccctgcga aacgctacct gcgccatcag caaggaacat
    66601 caccagtaat ggttgctggt cgtttaacca gacaacctgc atctggcagg catcctgaca
    66661 aggcaaatca gcactaatgt gcgatgttcc aacagcggat gcataaacca gacgccagct
    66721 cacactgacg tccagccttt tggcgcttcc agcacaactt ccgttcccgg cgtggagcgg
    66781 gaaaccgaac gcagcgaact ggataaccag ctaaacagtt cacggaattg taatccctgc
    66841 agtggcaaag gctgacgaac gctgatttgt gccagagtct tcatatccgc cccctgaaca
    66901 ccgatggaaa agaaggcaaa cttcttatct tcttccccct gaaacacttt gttggcggca
    66961 gcctgccact catcggttgg agcgccatcg gtgatcagga aaatccacgg gcgataatac
    67021 gaaataccat ttgcgcggta ctcacgtttc ctctcttcaa ccatatctag ggctttggta
    67081 atggcggccc ccataggcgt atccccctgg gcaaacagga tgggcgggaa aaagttagcg
    67141 gcgctggtaa agggttgttc cacatgcacc gggccgaacg tcacaatgcc gagttccact
    67201 ctttttaaag ccagcggatc agcaagcagt tcatcacgaa aggtaaccaa tccggcgtta
    67261 agttcattaa taggtctgcc gctcatcgag ccagaaacat ccagcagcaa aatgcagggg
    67321 caacgtggtt ccgggttact ggcaaaatcg ctggtggcaa acgtgatttg ttcgctcata
    67381 agaaatcctt tcttagagaa ttatcgaggt ccggtatcat accgattgca ataatgaaat
    67441 aagagcaaac gaagaaactt tcagaattag gcccgtcggc gcagaaaatt ttgctattcg
    67501 cctcgcaaga acggagagcc gtcgattgac actaagggcg gagtgacata atttcaggag
    67561 tgagggttag ggagaggttt ccccctcccc ctggtgttct tagtaagcct ggaagctaat
    67621 cactaagagt atcaccagta tgatgacgtg cttcatcata accctttcct tattaaaagc
    67681 cctcttctcc gggagaggct ttcccgtttc agcgtcccgc tgaaatcatc ggcttacctc
    67741 ctttcgccct gaatgcagtc tatcgctaac gcgtgaataa aatagtttcc tctgtgatta
    67801 ttgcgtaacg actcgcaaag aatatttgct ggcaggatcg cagactacaa agcctacgga
    67861 ttgacaatct tatcgtgaag gcatactttc aggagtgagg gtagagcggg gtttcccccg
    67921 ccctggtagt cttagtaagc ggggaagctt atgactaaga gcaccacgat gatgagtagc
    67981 ttcatcatga ccctttcctt atttaaggcc ccttcctcgg gaggggcttt cccgtttcag
    68041 cgtcccgctg aaatcgtcgg cttacctcct ttcgccctgt atgcagtcta tcgctgactt
    68101 gcggataaaa tagtttccag tgtgattatt gcgtaacgtc tcgcaaagaa tatttgctgg
    68161 caggatcgca gactgcaaag cctgcagatt gacaatctta tcgtgaaggc atactttcag
    68221 gagtgagggt agagcggggt ttcccccgcc ctggtagtct tagtaagctg gccagctaat
    68281 gactaagagc accacgatga tgagtagctt catcatgacc ctttccttat ttatggcccc
    68341 ttcctcggga ggggctttcc cgtttcagcg tcccgctgaa atcggcggct tacctccttt
    68401 cgccatgcaa gcagtctatc cctaacgcgt agataaaata gtttcctgtg ttattactgg
    68461 atgcgtgctc gcaaatgtgc ccgtcattca gacaattccc gacagtgttt cataattcct
    68521 ccatttttct cccttattgg ctggctacac tagtatcatt ccgcgaaacg tttcaggaag
    68581 agaaactctt aacgatgaaa ggcagttata aatcccgttg ggtaatcgta atcgtggtgg
    68641 ttatcgccgc catcgccgca ttctggttct ggcaaggccg caatgactcc cggagtgcag
    68701 ccccaggggc gacgaaacaa gcgcagcaat cgccagcggg tggtcgccgt ggtatgcgtt
    68761 ccggcccatt agccccggtt caggcggcga ccgccgtaga acaggcagtt ccgcgttacc
    68821 tcaccgggct tggcaccatt atcgccgcta atactgttac ggtgcgcagc cgcgtggacg
    68881 gtcaactgat ggcgttacat ttccaggaag gccagcaggt caaagcaggc gatttactgg
    68941 cagaaattga ccccagccag ttcaaagttg cattagcaca aacccagggc caactggcaa
    69001 aagataaagc cacgcttgct aacgcccgcc gtgatctggc gcgttatcag caactggcaa
    69061 aaaccaatct cgtctcccgt caggagctgg atgcccaaca ggcgctggtc agtgaaaccg
    69121 aaggcaccat taaggctgat gaagcaagcg tcgccagcgc gcagttgcaa ctcgactgga
    69181 gccgcatcac cgcaccagtc gatggtcgcg ttggtctcaa gcaggttgat gttggtaacc
    69241 aaatctccag tggtgatacc accggaattg tggtgatcac ccagacgcat cctatcgatt
    69301 tagtctttac cctgccggaa agcgatatcg ctactgtagt gcaggcgcaa aaagccggaa
    69361 aaccgctggt ggtagaagcc tgggatcgca ccaattcgaa gaaattaagt gaaggcacgc
    69421 tgttaagcct cgataaccaa atcgatgcca caaccggtat gattaaagtg aaagcacgct
    69481 ttaataatca gaatgatgtg ctgtttccca atcagtttgt taacgcgcgc atgttagtcg
    69541 acaccgaaca aaacgccgta gtgatcccaa cagccgccct gcaaatgggc aatgaaggcc
    69601 attttgtctg ggtgctgaat agcgaaaaca aggtcagcaa acatctggtg acgccgggca
    69661 ttcaggacag tcagaaagtg gtgatccgtg caggtatttc tgcgggcgat cgcgtggtga
    69721 cagacggcat tgatcgcctg accgaagggg cgaaagtgga agtggtggaa gcccagagcg
    69781 ccaccactcc ggaagagaaa gccaccagcc gcgaatacgc gaaaaaagga gcacgctcct
    69841 gatgcaggtg ttacccccga gcagcacagg cggcccgtcg cgcctgttta ttatgcgtcc
    69901 tgtcgccacc acgctgctga tggtggcgat cttactcgcc gggattatcg gttatcgcgc
    69961 cctgcccgtt tcggcgctgc cggaagtgga ctatccgacc attcaggtgg tcacgctcta
    70021 cccaggtgcc agcccggatg tcatgacctc tgccgttacc gcgccgctcg aacgccagtt
    70081 cgggcagatg tctggcctga aacagatgtc gtcgcaaagt tccggcggtg cgtcagttat
    70141 cactttgcag ttccagctaa cattaccgct cgatgtcgcc gagcaggaag tgcaggccgc
    70201 gattaacgct gcgaccaact tgttgccgag cgatctgcct aacccgccgg tttacagcaa
    70261 agtgaacccg gcagatccgc cgatcatgac gctcgccgtc acctcaaccg ccatgccgat
    70321 gacgcaagtg gaagatatgg tggaaacccg cgtcgcgcag aaaatctcgc agatttccgg
    70381 cgtcggcctg gtgacgcttt ccggcggtca gcgtccggct gttcgcgtca aacttaacgc
    70441 tcaggcgatt gccgccctcg gcctgaccag cgaaaccgtg cgcaccgcca ttaccggcgc
    70501 taacgttaac tcggcaaaag gtagcctcga cggcccttcc cgtgcggtca cgctttccgc
    70561 gaacgaccag atgcaatccg ccgaagagta tcgccagcta atcatcgcct accagaacgg
    70621 cgcgccaatt cgtctgggcg atgtcgcaac tgtagagcaa ggtgcagaaa acagctggct
    70681 cggcgcgtgg gcgaacaaag aacaggccat tgtgatgaat gttcagcgcc agcccggtgc
    70741 taacattatc tccaccgccg acagcattcg gcagatgctg ccacagctca ctgagagtct
    70801 gccgaaatcg gtgaaggtga cagtgctttc cgatcgcacc accaatatcc gcgcatccgt
    70861 cgatgatact cagtttgaat tgatgatggc tatcgcgctg gtagtcatga ttatctacct
    70921 gtttttgcgc aatattccgg cgaccatcat tcccggtgtt gctgtaccgc tgtcgttaat
    70981 cggcactttc gcggttatgg tgtttctcga tttttcaatc aataacctga cactgatggc
    71041 gttaactatc gccaccggat tcgtggtcga tgacgccatc gtggtgatcg aaaacatttc
    71101 ccgctatatc gaaaaaggcg aaaaaccgtt ggcggcggcg ctcaagggcg caggtgaaat
    71161 cggctttacc attatctcgc tgatcttctc actgattgcg gtgttgatcc cactgctgtt
    71221 tatgggcgat atcgtcgggc gactgttccg cgaatttgct attaccctgg cggtagcgat
    71281 tttgatctca gcggtggtgt cgctgaccct gacaccgatg atgtgcgcgc ggatgctcag
    71341 ccaggagtcg ttgcgtaaac agaaccgctt ctcccgtgcc tcggaaaaaa tgttcgacag
    71401 gataatcgcc gcctatggtc gtggactggc gaaagtgctg aatcatccgt ggctgacctt
    71461 aagcgtggca ctcagcacgc tgctgcttag cgtgctgctg tgggtgttca ttccgaaagg
    71521 tttcttcccg gtacaggaca atggcattat tcagggcact ttgcaggcac cgcaatccag
    71581 ctcctttgcc aatatggccc agcgacaacg ccaggtcgcg gacgtgattt tgcaggatcc
    71641 ggcagtgcaa agcctgacct catttgttgg cgttgatggc actaacccgt cgctgaatag
    71701 tgcacgttta caaatcaacc tcaaaccgtt ggatgaacgt gatgatcggg tgcaaaaagt
    71761 catcgcccgt ctgcaaacgg cggtagataa agtgccgggc gtcgatctct tcctgcaacc
    71821 aacgcaggat ctgactattg atactcaggt cagccgcacc cagtaccagt ttaccttgca
    71881 ggccacctca ctggatgcgc tcagtacctg ggtgccacag ttgatggaaa aactccagca
    71941 actgccacag ctttctgatg tctccagcga ctggcaggac aaagggctgg tggcgtatgt
    72001 caatgttgat cgcgacagcg ccagccgtct ggggatcagc atggcggatg tcgataatgc
    72061 cctgtacagt gcgtttggtc agcgactgat ttccactatt tatactcagg ctaaccagta
    72121 tcgcgtagtg ctggagcaca acaccgaaat taccccgggc ctcgcggcgc tggataccat
    72181 tcgcctgacc agtagcgacg gcggcgtggt gccgttaagc tcaattgcca aagttgaaca
    72241 gcgttttgcg ccgctttcca tcaaccatct ggatcagttc ccggtaacga ccatctcctt
    72301 taacgtgccg gataactatt cgctgggcga tgcggtgcag gcgattatgg acaccgaaaa
    72361 gacgctgaat ctgccggtgg atatcaccac gcaattccag ggcagcaccc tcgccttcca
    72421 gtcggcgctg ggcagcactg tctggctgat tgtcgcggcg gtggtggcga tgtatatcgt
    72481 gctcggcatt ctgtacgaga gctttattca cccgatcacc attctctcga cgctacccac
    72541 cgcaggggtc ggcgcgctgc tggcattaat gattgccggt agcgaactgg atgtgattgc
    72601 gattatcggc attattttgc tgatcggtat tgtgaagaag aacgccatca tgatgatcga
    72661 cttcgcgctg gctgctgagc gcgagcaagg catgtcgccg cgcgatgcaa tctaccaggc
    72721 ttgtctgttg cgttttcgtc cgatcctgat gaccaccctg gcggctctgc ttggcgcgct
    72781 gccgctgatg ttgagtaccg gggtcggcgc ggaactgcgt cgtccgttag gtatcggcat
    72841 ggtcggcggt ctgattgtca gccaggtgct gacgctgttc accacgccgg tgatttatct
    72901 gctgttcgac cgcctggcat tgtggaccaa aagtcgcttt gctcgccatg aagaggaagc
    72961 gtaagtgaag ttttttgccc tcttcattta ccgtccggtg gcgacgattt tactgtcggt
    73021 tgccattacc ctgtgcggca tactgggctt ccgtatgctg ccggtcgccc cgctgccgca
    73081 ggtcgatttt ccggtgatta tggtcagcgc ctcgctgccc ggtgcgtcac cagaaacaat
    73141 ggcgtcttcc gttgccacgc cgctggagcg ctcacttggg cgcattgccg gagtcagtga
    73201 aatgacctcc agcagttcgc tcggcagcac gcgtattatt ttgcagtttg attttgaccg
    73261 ggatatcaac ggcgcggcgc gcgatgtgca ggcggcgatc aacgctgcac aaagtttgct
    73321 gcccagcggg atgcccagcc gtccgaccta tcgcaaagct aacccgtcgg atgcgccaat
    73381 tatgatcctc acgctgacat ccgatactta ttcgcagggt aaactgtacg atttcgcctc
    73441 gacgcagctg gctccgacga tttcgcaaat cgacggtgtt ggtgatgtcg atgtcggcgg
    73501 cagctcactg cccgccgtac gcgtcgggct gaatccgcag gcgctgttta atcagggcgt
    73561 ctcgctggac gacgtacgca ctgccatcag caatgccaac gtgcgtaaac cgcagggggc
    73621 gctggaagat ggcactcacc gctggcagat ccagaccaat gatgagctaa aaaccgccgc
    73681 cgaatatcag ccgctgatta ttcattacaa caacggcggc gcggttcgtc tgggcgatgt
    73741 ggcgacagtg accgactctg tacaggatgt acgtaacgcc gggatgacca atgccaaacc
    73801 ggctattttg ctgatgatcc gcaagctgcc ggaagccaat attatccaga cggttgacag
    73861 catccgggca aaattaccgg agttgcagga aaccattccg gcggcgattg atctgcaaat
    73921 tgctcaggat cgctccccca ccattcgcgc ctcgctggaa gaagtcgagc aaacgctgat
    73981 tatctcggtg gcgctggtga ttctggtggt gtttttattc ctgcgctcgg gtcgcgcaac
    74041 tattattccc gccgttgcgg tgccggtttc gctgattggt acgtttgcgg cgatgtacct
    74101 gtgcggtttc agtctcaata atctttcgtt aatggcgctc accatcgcta ctggtttcgt
    74161 ggtggatgac gccatcgtgg tgctggaaaa cattgcccgt catctggaag cgggaatgaa
    74221 accgttgcaa gccgcactgc aaggtactcg cgaagtcggt tttacggtgc tgtcgatgag
    74281 tctgtcactg gtggcggtgt tcctgccgct gctgttgatg ggcggattgc cgggccgact
    74341 gttacgcgaa tttgccgtga cgctttctgt cgccattggt atatcgttgc tggtttctct
    74401 gacattaacg ccaatgatgt gtggctggat gctgaaagcc agcaagccgc gcgagcaaaa
    74461 gcgactgcgt ggttttggtc gcatgttggt agccctgcaa caaggctacg gcaagtcact
    74521 gaaatgggtg ctcaatcata cccgtctggt gggcgtggtg ctgcttggca ccattgcgct
    74581 gaatatctgg ctgtatatct cgatcccgaa aaccttcttc ccggagcagg acactggcgt
    74641 gttgatgggc gggattcagg cggatcagag tatttcgttt caggcgatgc gcggtaagtt
    74701 gcaggatttc atgaaaatta tccgtgacga tccggcagtg gataatgtca ccggctttac
    74761 aggcggttcg cgagtgaaca gcgggatgat gtttatcacc ctcaagccac gcgacgaacg
    74821 cagcgaaacg gcgcagcaaa ttatcgaccg tctgcgcgta aaactggcga aagaaccggg
    74881 ggcgaatctg ttcctgatgg cggtacagga tattcgcgtt ggtgggcgtc agtcgaacgc
    74941 cagctaccag tacacgttgt tatccgacga cctggcggca ctgcgagaat gggagccgaa
    75001 aatccgcaaa aaactggcga cgttgccgga actggcggac gtgaactccg atcagcagga
    75061 taacggcgcg gagatgaatc tggtttacga ccgcgacacc atggcacggc tgggaatcga
    75121 cgtacaagcc gccaacagtc tgttaaataa cgccttcggt cagcggcaaa tctcgaccat
    75181 ttaccagccg atgaaccagt ataaagtggt gatggaagtg gatccgcgct atacccagga
    75241 catcagtgcg ctggaaaaaa tgttcgttat caataacgaa ggcaaagcga tcccgctgtc
    75301 gtatttcgct aaatggcaac cggcgaatgc cccactatcg gtgaatcatc agggattatc
    75361 ggcggcctcg accatttcgt ttaacctgcc gaccggaaaa tcgctctcgg acgccagtgc
    75421 ggcgatcgat cgcgcaatga cccagcttgg ggtgccttcg acggtgcgcg gcagttttgc
    75481 cggcacggcg caggtgttcc aggagacgat gaactcgcag gtgatcctga ttatcgccgc
    75541 catcgccacg gtgtatatcg tgctgggtat cctttacgag agttacgtac atccgctgac
    75601 gattctctcc accctgccct cggcgggcgt tggagcgctg ttggcgctgg agctgttcaa
    75661 tgccccgttc agcctaatcg ccctgatagg gatcatgcta ttaatcggca tcgtgaagaa
    75721 aaacgccatt atgatggtcg attttgcgct tgaagcccaa cggcacggta acctgacgcc
    75781 gcaggaagct attttccagg cctgtctgct gcgttttcgc ccgattatga tgaccaccct
    75841 ggcggcgctg tttggtgcgc tgccgctggt attgtcgggc ggcgacggct cggagctgcg
    75901 gcaacccctg gggatcacca ttgtcggcgg actggtaatg agccagctcc ttacgctgta
    75961 taccacgccg gtggtgtatc tctttttcga ccgtctgcgg ctgcgttttt cgcgtaaacc
    76021 taaacaaacg gtaaccgagt aaatgacaga tcttcccgac agcacccgtt ggcaattgtg
    76081 gattgtggct ttcggcttct ttatgcagtc gctggacacc accatcgtaa acaccgccct
    76141 tccctcaatg gcgcaaagcc tcggggaaag tccgttgcat atgcacatgg tcattgtctc
    76201 ttatgtgctg accgtggcgg tgatgctgcc cgccagcggc tggctggcgg acaaagtcgg
    76261 cgtgcgcaat attttcttta ccgccatcgt gctgtttact ctcggttcac tgttttgcgc
    76321 gctttccggc acgctgaacg aactgttgct ggcacgcgcg ttacagggcg ttggcggcgc
    76381 gatgatggtg ccggtcggca gattgacggt gatgaaaatc gtaccgcgcg agcaatatat
    76441 ggctgcgatg acctttgtca cgttacccgg tcaggtcggt ccgctgctcg gtccggcgct
    76501 cggcggtctg ctggtggagt acgcgtcgtg gcactggatc tttttgatca acattccggt
    76561 ggggattatc ggtgcgatcg ccacattgct gttaatgccg aactacacca tgcagacgtg
    76621 gcgctttgat ctctccggat ttttattgct ggcggttggc atggcggtat taacccctgg
    76681 cgctggacgg cagtaaaggt acaggtttat cgccgctggc gattgctggc ctggtcgcag
    76741 ttggcgtggt ggcactggtg ctttatctgc tgcacgccag aaataacaac cgtgccctgt
    76801 tcagtctgaa actgttccgt actcgtacct tttcgctggg cctggcgggg agctttgccg
    76861 gacgtattgg cagtggcatg ttgcccttta tgacaccggt tttcctgcaa attggcctcg
    76921 gtttctcgcc gtttcatgcc ggactgatga tgatcccgat ggtgcttggc agcatgggaa
    76981 tgaagcgaat tgtggtacag gtggtgaatc gctttggtta tcgtcgggta ctggtagcga
    77041 ccacgctggg tctgtcgctg gtcaccctgt tgtttatgac taccgccctg ctgggctggt
    77101 actacgtttt gccgttcgtc ctgtttttac aagggatggt caactcgacg cgtttctcct
    77161 ccatgaacac cctgacgctg aaagatctcc cggacaatct ggcgagcagc ggcaacagcc
    77221 tgctgtcgat gattatgcaa ttgtcgatga gtatcggcgt cactatcgcc gggctgttgc
    77281 tgggactttt tggttcacag catgtcagcg tcgacagcgg caccacacaa accgtcttta
    77341 tgtacacctg gcttagcatg gcgttgatca tcgcccttcc ggcgttcatc tttgccagag
    77401 tgccgaacga tacgcatcaa aatgtagcta tttcgcggcg aaaaaggagc gcgcaatgaa
    77461 gttctggcga cccggtatta ccggcaaact gtttctggcg attttcgcca cctgcattgt
    77521 cttgctgatc agtatgcact gggcggtgcg tatcagtttt gagcgtggct ttattgatta
    77581 catcaagcat ggtaatgaac agcgattaca actgttaagt gatgcgcttg gcgagcagta
    77641 tgcgcagcat ggcaactggc gcttcctgcg caacaatgat cgctttgtct ttcagatcct
    77701 gcgttcattt gaacacgata attcggaaga taaacccggc ccgggtatgc caccgcacgg
    77761 ctggcgtacc cagttctggg tggttgatca aaacaacaaa gtgctggttg gtccgcgagc
    77821 gccgattcca cctgacggta cacggcgacc cattctggtc aacggtgcgg aagttggcgc
    77881 ggtgatcgcc tcccccgttg agcggttaac gcgcaatact gatatcaatt tcgataaaca
    77941 acagcggcaa accagctggt tgattgtcgc cctggcaacg ttactcgcgg cacttgccac
    78001 ttttctgctg gcgcgcggtt tactggcacc ggtaaaacga cttgtcgatg gcacgcacaa
    78061 actggcggcg ggcgatttca ctacccgcgt aacgcccacc agtgaagatg aactgggcaa
    78121 actggcgcaa gacttcaacc agcttgccag cacactggag aaaaaccagc aaatgcggcg
    78181 cgattttatg gccgatattt ctcacgaact gcgtacgcca ttagcggtgc tgcgcggtga
    78241 actggaagcc attcaggatg gcgtgcgtaa attcacgccg gagacggtgg cgtctttaca
    78301 ggcggaggtc ggtacactga ccaaactggt tgacgatctc catcagttgt cgatgtctga
    78361 tgaaggcgct ctcgcctatc aaaaagcacc ggtagatttg atcccactgc tggaagtggc
    78421 gggcggcgca tttcgcgaac gattcgccag tcgtggcctg aaactgcaat tttccctgcc
    78481 agacagtatt accgtatttg gcgatcgcga ccgtttaatg cagttattca ataatttact
    78541 tgaaaacagc ctgcgctata ctgacagcgg cggcagcctg aaaatctctg ccgagcagca
    78601 cgacaaaacg gtgcgcctga cctttgccga cagtgcgcca ggtgtcagtg acgagcagct
    78661 acaaaaatta tttgaacgtt tttatcgcac cgaaggttcc cgcaaccgcg ccagcggtgg
    78721 ttccgggctg gggctggcga tttgcctgaa cattgttgaa gcacataatg gccgcattat
    78781 tgctgcccat tcgccttttg gcggggtaag cattacagta gagttaccgc tggaacggga
    78841 tttacagaga gaagtatgac cgaattacca atcgacgaaa acacaccacg tattttgatc
    78901 gtggaagatg aaccgaagct ggggcagttg ctcattgatt atctgcgtgc tgcgagctat
    78961 gcgccgacgc ttatcagcca cggcgatcag gtactgccgt atgtgcgcca gacaccaccg
    79021 gatctgatcc tgttggatct gatgctccct ggcaccgatg gcttgacgct gtgccgggaa
    79081 attcgtcgtt tttctgacat tcctatcgtg atggtgacgg caaaaatcga agagatcgac
    79141 cgcctgctcg gactggagat tggcgcagat gactacatct gcaagccgta cagcccacgg
    79201 gaagtggtag cgcgcgtcaa aaccattttg cgccgttgca aaccgcagcg cgaattgcag
    79261 caacaggatg ccgaaagccc gttgattatc gacgaaggtc gttttcaggc ttcatggcgc
    79321 ggtaaaatgc ttgacctgac acctgcggaa tttcgtctgt tgaaaacgct ctctcatgaa
    79381 ccaggaaaag tgttctcccg cgagcaattg ctcaatcatc tttatgacga ctaccgcgta
    79441 gtaaccgacc gcaccattga cagccacatt aaaaacctgc gccgcaagct ggaatctctc
    79501 gacgccgaac agtcatttat ccgcgccgtt tacggcgttg gttaccgctg ggaagccgac
    79561 gcctgccgca tcgtttagtt ttagcgacat gactttgtta gccggagatg gcgttcagac
    79621 cagatccggc aacattatcc cacgcatggt cagcaaactg acattatctc tccgccctgg
    79681 caggcatcag aaaatcgctc atactttaat cggtaaacag cacctttaga tgctgttttc
    79741 gatacgcaat ttcaatcaag gagtcattat ggctggttgg tttgaactca gtaagagcag
    79801 tgataatcag ttccggtttg tgctaaaagc gggcaatggt gagactatcc tcaccagcga
    79861 gctgtataca tcaaaagcct ctgcggaaaa gggcatcgcg tcagtgcgta gcaacagccc
    79921 gcaagaagaa cgctatgaga aaaaaacggc aagtaacggc aaattctatt tcaatctgaa
    79981 agccgccaat catcaaatta tcggctccag ccagatgtac gccaccgcgc aatctcgtga
    80041 aaccggaatt gcctccgtta aagccaatgg cacaagccag acggtgaaag acaatacgta
    80101 attacgatgc cgggcgtggg ttgttggcgt ccggctttat tttctctcat cacagagtta
    80161 ctatccctca agaaattatt aaccatgaaa tgagttttct cctcataact gataaggaaa
    80221 attatgctca aaggattgcg tacattattt tcacgcaggg ttttgtttaa cgtcgaaatg
    80281 aataattctg ttgactgtga attacttctc atccagcaac aactccaggc attgatagcc
    80341 gaaccaggca attatttagc acatgattgt gatctcaacg atactctggt tctttgccag
    80401 cttacccatc atcacaatgg atatatacga gaaaaggccg tgcagtatct ggggcacaaa
    80461 gaggatgttg cggctataga agaattatta cttgcagcta atgactgggt aaaagaggtt
    80521 cgccttgctg caaccatagc attacgtcat ttaatgaagg ataagaatgc agcggcattt
    80581 gccgttaatc tacccatgat acgtaacctt ctccaatgcc agcgttacga tcaccgtgca
    80641 tttgtagacg agatacttag atatttattg acagaaaata accgcccaca attaacgtat
    80701 tggcttactt gccctgataa aaagctctcc cgcgcggtat tacaaacgct gattgaatac
    80761 ggttacttta atgatgaatc ttcactgctt tcaatactcg ataaacccga tgagggtttg
    80821 cgaatgctgg cgaccaccca ctggctgcgt caacaattac cattaagcga agcggtatta
    80881 actcgtctgt taaaagaccg ctggccgcgt attcgacaag caacgttatt tagcctcact
    80941 gaccgagcaa tagaaatgcc tccggcgttg cacagcacat tactgctgga taacaatatg
    81001 ttgatccgcc tacgcgctaa aaatatgctt cacgaagtca tggatgttcc gcaattctgg
    81061 cgtcatgttg tcacttctgc ggaatatact ccctcacagc gacgggccgc tttatacggg
    81121 ctggattcca ttcatgatcc caatatttta aaactggcag aatggggatt atcacagaat
    81181 gtattcccac tgcgtttagc cgctatgcac attcttgcaa aagctaatcc tcgttgtggc
    81241 gtcaaagaga ctattctgac cacgctggct aacccggacg ccgccgggtt gcgatttatg
    81301 gttaacatct gtgtatggtg tcgcgttccg ctcacgttcg aggaaatacg tcagttgcag
    81361 gaaaacgcgc cgtcagttaa acatgcttgc gcatattgtc ggctgtatca taacttgaac
    81421 aaatgggacg gtttaattct tcttcttcaa tcgcaacaca agctaactga agaatttgca
    81481 ggtaaacagc tcgcgatatg gcaacgcaat ttcaatcttt cgggcattca accgaatgct
    81541 cttcagcgtc agcaacttca ggcgcttttt acccgcaatc cggaacttca caacagatta
    81601 tggggttaca ttccttttaa ataacttcga attatagact tacgatgaca aatgtacctg
    81661 ctgacgagcg gaaccaaaac gaaacaatac gtgaagcttt acgcttgcta cgagaaaaac
    81721 ttgccgaggg actacgcagt ggcgaagccc aaccgtggga aaaggatctg tttttacata
    81781 aagtgaaggc cggtaacaaa taaatccccc agtcttttcc ctcacatttg cactggagcc
    81841 aaccccgccg attgcgctac aatgcccgcc cttaaagtgg gggcactccc ctaaccgctt
    81901 catcaggtga agcggatctg acctgtcatc agaacgagag aattatgttt aaaccggaac
    81961 tcctttcccc ggcgggaacg ctgaaaaata tgcgttacgc tttcgcttat ggcgcagatg
    82021 ctgtttatgc gggccagccg cgttactccc tgcgtgtgcg caacaacgaa ttcaaccacg
    82081 aaaatcttca gctcggcatc aatgaagccc acgcgctggg gaaaaagttt tatgtcgtgg
    82141 tcaacattgc accgcacaac gccaagctga aaacctttat ccgtgacctg aaaccggtgg
    82201 tggaaatggg gccggatgcg ctgattatgt ccgatccagg gctgattatg ctggtgcgtg
    82261 agtacttccc tgaaatgccg atccacctct cggtgcaggc taacgccgta aactgggcga
    82321 cggtgaaatt ctggcagcaa atgggcctga cccgcgtgat cctctctcgc gaactgtcgc
    82381 tggaagagat tgaagagatc cgcaatcagg tgccggatat ggagatcgag atcttcgttc
    82441 acggtgcgct gtgcatggcc tactccggtc gctgcctgct ctctggctat atcaacaagc
    82501 gcgatccgaa ccagggtacc tgcaccaacg cctgccgctg ggagtacaac gtccaggaag
    82561 ggaaagaaga tgacgttggc aacatcgtac acaagtacga gccgatcccg gtgcaaaatg
    82621 ttgagccgac gctaggtatc ggcgcgccaa ccgacaaagt gtttatgatc gaagaagccc
    82681 agcgtccggg cgagtatatg accgcgtttg aagatgagca cggcacttac atcatgaact
    82741 cgaaagatct gcgcgccatc gcccatgtag aacgcctgac caaaatgggc gtgcattcgc
    82801 tgaaaatcga aggccgtact aaatctttct actattgcgc acgcaccgca caggtttatc
    82861 gtaaagctat cgatgatgcc gctgcgggca aaccgttcga taccagcctg ctggaaactc
    82921 tggaaggtct ggcgcatcgt ggctataccg aaggtttcct gcgtcgtcat actcacgacg
    82981 attatcagaa ctacgaatac ggttattcag tttctgaccg ccagcagttt gttggtgagt
    83041 ttaccggtga gcgcaagggg gacctcgcag cggtagcggt gaaaaataaa ttctccgttg
    83101 gcgacagcct tgagctgatg acgccgcaag gcaacattaa ctttaccctt gagcacatgg
    83161 aaaacgccaa aggtgtagcg atgccggtcg caccaggcga tggttatact gtgtggctcc
    83221 cggtcccgca ggatcttgaa ctaaattacg cgctgctgat gcgtaatttc tccggggaaa
    83281 ccacgcgtaa cccacacggt aagtgattaa tttcgattat ttttcccgga tggaaaattc
    83341 ttagaaaccg atcacataca gctgcattta ttaaggttat catccgtttc gctgaaaaac
    83401 ataacccata aaatgctagc tgtaccagga accacctcct tagcctgtgt aatctccctt
    83461 acacgggctt attttttatg cataagccct atccctggtc accgtcttcc attgaccaca
    83521 tcgatagaat ctcccttcat agcacgatgc ctttcacgta acggcatcgt gctcgcacag
    83581 gttccggcta agcacaacca gaacgcgcat gtttgatgct taccaaaaaa tattctcact
    83641 ctccacattt gaatgtcaga cgagcgacac catgtaatcc tacaccttct gtcttcagct
    83701 caactatttg catttttttg ccctgagtaa cacagaaatg agttgcatca ttttttacta
    83761 tattttctgc accagatatt ctactcctgg ctaaagaagc ttcggcttcg gtgtagtatt
    83821 ggttatcgag tttacgctga atattacttt tatatgcaag accaaattta ccgatacttg
    83881 tctcatcatt atgcacagca caaccagaca taataaaaat actaattaat gatatagcag
    83941 ctatcttttt catctcacct ttccccatta aataccaacg acactctcta gtgtttaaat
    84001 ataataatag ctgatcatta tatttgaata ggattataat aaatgttctg tacaacattt
    84061 cctacataag taggacttac agacatgaag gccctttcca ggtaactcca tggggcttta
    84121 atatatttgg aatagtatat ttaagatgcc actgtttggt tgaatattag gcatatgctc
    84181 ttttttgaaa tttatcggtg gctaccgtta atattcgctg ttcccattgc aagctcctgg
    84241 tggtaaccac tgaatcctcc atacttgaac tgacttttta tcctccgact ttcatcctgt
    84301 tctgactcca ccttttcttt tctgctctac actatctaca gaccaatcat aaaggcacat
    84361 acgatcatgg cagaatttcc cgccagctta ctgattctta atggcaaaag tactgacaat
    84421 ctacccttgc gcgaagcaat tatgctgttg cgtgaggaag gaatgacgat ccatgtgcgg
    84481 gtcacctggg agaaaggtga tgccgcacga tttgtagagg aggcccggaa gttgggcgtc
    84541 gcaacggtaa ttgccggtgg tggcgatggc accattaatg aagtttctac ggcgttgatt
    84601 cagtgtgagg gggatggcat acccgcgctg ggaattttgc cattaggaac cgccaatgat
    84661 tttgccacca gtgtagggat tcctgaggca ctggataagg cgctgaaact ggcaattgcc
    84721 ggtaacgcca ttgcgataga tatggcgcag gtcaacaaac aaacctgttt tattaatatg
    84781 gcgacaggcg gatttgggac gcgtattacc acagaaacgc cggaaaaatt aaaagccgcg
    84841 ctgggtggcg tctcttacat cattcatggc ttaatgcgca tggatactct gcaaccggac
    84901 cgttgtgaaa tccgcggtga aaactttcac tggcaaggtg acgccctggt attggtattg
    84961 gtaacgggcg tcaggccggt ggcggtcagc aattgtgtcc gaacgcgtta attaacgatg
    85021 gcttgctgca actgcgcatt tttaccggcg atgaaattct tccggctctc gtatcaacct
    85081 taaaatctga cgaagataac ccgagtatta tcgaaggcgc ttcgtcgtgg tttgatatac
    85141 aagccccaca cgaaatcact tttaatcttg atggcgaacc gttgagcgga caaaactttc
    85201 atattgaaat acttccggcg gcgttgcgtt gtcgattacc accagattgt ccattattgc
    85261 gttaatcaaa ctattctctc ttgaaccagg gagaatccga aatgccggat gcggtgtaaa
    85321 taccttatcc ggcatacaga acaatactac accgtaatta attttacccg tgtcttctgc
    85381 aatgccagtt tatccacctc tgatacagca tcatcggtaa taataatgtc aattttttcg
    85441 attggcagta cctgattaaa accgcgacgg ttaaatttcg atgaatcgag aacggcaatc
    85501 actttattag cggctgtgac catcgcaccg ctaacggaat aaccctcatt aaaggtcgta
    85561 ataccattaa ccgcatcaat accatcagca ccgacaaaca ttaaatcggc attaatatcc
    85621 tgcagggaac gttcagcaat agatccatgc atagatcgcg ttttatggcg gaccgtgcca
    85681 ccgcagacga ccagagtaat gtctttattt tcggaaaggg caaacgctgc cgggagactg
    85741 ttggtaatca ccgtgatatt tttagcggtc attaatcctt cggcgataag cattgtggta
    85801 cttccgctgt cgagaataac ggtcatccct tcatggatca ttttgactgc cgcctgcgct
    85861 attctgtttt ttggcgcgct ggcgagctga aatcgctctt taaacccgac ttcctgggtc
    85921 tcggtttcac tattaccgga cattattttc gccgcaccgc catgaaagcg cgtaaccacg
    85981 cctttttgtt cgagaaagcg caaatcggca cggattgtcg cttccgaggc agcaaatact
    86041 cccgccagat cctgaacaag cacggttccc tgttcattca ctaattggat gatcttattc
    86101 cttcgctcga atgaattcat cgtcatttac ccatattcaa ttgtggctag tgtaaacgaa
    86161 gggggaccat tggtgaatga tctgttttgc acaataccgg gccagcatca cgctggcccg
    86221 cggtttcatg gaatgagcaa cactttgccc ggcatggcat tacgagcgat gtcacgcacc
    86281 gcctgggtga agctttcaaa gcttccacgg tgagcgatta atggctccag gcttaactta
    86341 cgttctgtca gcaaccggct cgccgtttcc cactcctgcc ccggccaagg gctggaatag
    86401 ttcatccaac tgccgataac cgtcagctct ttacgcaata ttttgccaaa cgttgccgat
    86461 gttaaatgca gatcctgatg caacgtgccc accagcgcca gttgggcatg aggaccggca
    86521 atctctaccg ccagttcgac agtttgcggt acgccagccg tctcgaggat aagctgatta
    86581 aaacgcagtt cgcgtaaaac gctctgcatt tgcggcgcgc tcatttcgct actgttaaat
    86641 gtttgcatcg aaccgaaaga ttttgccagt gccagttttt ctgagctaat gtcgatagcc
    86701 gtcacactct ttgctcccag cgcgacagcg cactgaatag ccagcaggcc aatggttccg
    86761 gcaccaataa taataacgtt tttattctca caaccttgcg ctaaatgaaa agcatgcaga
    86821 ccaacggtaa tcggctcaat aaaagcccca tcctcaatag gcatatccgt gggtagagca
    86881 aagacatttt ttcgcttaac gacaatatat tcagcaaatc caccatcacg ccgcgagcca
    86941 ataaaatcat attttgcgca ctgggaataa aaccctttca gacactctgg acaagtaaaa
    87001 cagggtaata acggcacaca ggcaaccgca tcgccagggt gtaaatcatc aacaccggat
    87061 cccaccgcat caatatagcc gctaaattca tggcctaacg ttattggata ataatgtgca
    87121 ccatttttaa atatcctggg taaatcggaa ccacataagc ccgagctggc aatttttacc
    87181 cgcacctcat cctgatgttt aatttcagga atgacgcttt ctgcaacgcg cacgatacca
    87241 tcagtatcat tcaccactga tttcataaaa actcctgatt gttaaggggg ataaactccc
    87301 cctcagttaa aaattattct gcgagaacgg ctttctcttg tttaataaaa ccacgcgctc
    87361 tacgccaggt aatgaaaata ccggtcagat aaattgcgcc gataataatg aaaccgggaa
    87421 tattttgcgg ggagaaaacc tgaatcagta accaggtaat gggagaaccg ccctgatcca
    87481 ttgaagccac catacccccg gcttttaacg ccccagcatt agccgccagt tgggtgtgca
    87541 aaccaatagt ttgcgtcgcg atccacagag tgatgctcat gatgatgaca cccgagatta
    87601 aggtgcggaa cagatttcca cgatgcacgg cgactgccat cgccacaaag aagccgatgg
    87661 tggcaagatc gccaaacggc agtacctgat tacccggaac acaaacagca attaaaatgg
    87721 tgagcgggat aaaaatcagg cttaccgata ccaccgccgt atgccccagc agtaatgcgg
    87781 gatccaggcc aatcaggaac tcctgaccgc cgaacttcgc ctgtaaacga ctacgggcct
    87841 gcttagcgat gggcgttaaa ccatccatga tgggtttaat cacccgtggc attagcagca
    87901 tcactgccgc cgtttttacc gccagctgca atacaccttt gacatcgtaa cccgcgagga
    87961 tgccgataat cagccccatc acaaaaccca cggtgacagg ttcgccaaaa gggccaaatt
    88021 tgcgctgaat atcatcggcg ctaaatttaa ttcggttaac gcctgggatt ttctcgatga
    88081 tagcatcgac cagcaccgca atcggcccca tatacgccga cgtaccgtgc ggaatagcaa
    88141 taccttccag ctcaaagaaa tttcgggtat cgcgggcaaa ccagtcgccg agcttataaa
    88201 caaacgccgc gtgaattacc acacccgcca tccctatcat ccatgaaccg gttgccagat
    88261 gcagcaacgc gccggtgaaa gtcatatgcc agatattcca gatatcaaca tttaccaccc
    88321 gcgtcatacg ggtcagtaac atcgccacgt taaccagaat agcaatcgga atcgccacca
    88381 gcgcaatttg cgacgcccag gtcattggtg aagagcccgg ccagccgaca tcgaccacat
    88441 gcagattcag gtcgaaattt tccgccatcg ctttcgccgc cggaccaatg gaatccagca
    88501 ttaagccaat cacaaggcca atgccaacaa agccaatccc tatatgaaga cccgctttaa
    88561 agcaatcgcc tgccttcatg cctaatattt tagaaaaaat aatgatgaca atcggcagca
    88621 tcaccgtagg gccgaggtcg agaatataac gcatgacttc tgaaaacata ggtcacccct
    88681 gtaagatagt cagaatttta ttttgtaatg cttcgatacc gacaccagaa acaaaaggca
    88741 tgccgtgaac taacggaata tcgccaaaac tacgatccac cctggcagta gtgcatatca
    88801 aatgcacgcc atccatatag gtttctattt cattaacccg acactggatt aattcaacag
    88861 gaatattatg attctgacac aattctttaa tttcttccgc cgccatcgta gaggtcgcaa
    88921 ccgcgcctcc gcaagcgaca ataatcttgc gtttcataaa tagtcctttt tattgttaca
    88981 gagggattta ttcgtctgaa tctaaaacat actttgtgaa gtattccttt aactgggttt
    89041 caggaagagt gattagtgtc tcgacgatat cgggctgttg taacttgcca aataaacagc
    89101 gtaaaagttt caattgctgc tgcggatttt ccacaatcaa cgcaataacc aacgatacct
    89161 ccacgtcgtt atcatcatcc gcttgctgaa aatgaacttt atttgttggc cttaacagat
    89221 aaatggctga cgacttagca tgaatcgcct cacaatgcgg tattgcaatg gcgtgctgct
    89281 caagcattat cccggtaggg aattctgctt ctctggcaat taatgcctgt ggccaggtat
    89341 catgaaccac acctttggcg agcatctcat taccgatatg ggttaaaact tcgctacgat
    89401 cgacaaaaga aattccgcta cgaacaaaca ggttagtcat ataccgtcct tattccgcac
    89461 agccgtagcg ataggcgcgc aaaacatcat aaattttatc cataatcagc taatgcggta
    89521 ttgctgataa ttccccggac tgaatgcgtt caaattgttt gggaagatac tgactaatca
    89581 tgcccagtgg gatgtccacg ccttcaagat tcaccatcat cgtttcgacg ctatttttaa
    89641 tccgactatg cggccagtaa taacgaatac gatccgacag gctgtaacga atatccagta
    89701 atgaatcgtt aaaacccgta cgataatatt ttttccagta ttgcggttcg tcgagcatca
    89761 cttcttcaat taccgccagg caaccgctgc gattttcagg ggcgataagt tcctgctcaa
    89821 tttgtgccag tgcaaatatc gcctcgcgta aagcaaaggt taatgcggga ccgactttca
    89881 atattgcaaa gtgatcgcgg actaattccc aataagccgt ccgggtctgg taatcggtag
    89941 aatgtgcttc ataaaccatt cgggtgtttt ctatccattg cgccagcggc tgcgcttcct
    90001 gcggctgata atggataata ttgctgtgat caaattccac gcccggctgc accacgatgg
    90061 caatcacgcg tgttaacgcc tctgtcagcc cacggacaat aaaggccttt tgatgcgtac
    90121 gtaaagtatt ggcggcatct tcaacatggg tgatgtgtac tgactgaatg gcgctggcct
    90181 caccgcccgg aaccggaact tcggtgccaa tgacatagct cagttgctca cgctggcaat
    90241 ctgtcgccac actttccgca gcaaagcaaa gcacagcagc tcgttccgca accgtttctg
    90301 gtgctaacgg tatgggatcc cccgcgcagg acattgacgc atcaagatga attttactga
    90361 agccggcacg aacatattcc tttaccagct cgacggattt ttccatcgcc gcatccgcat
    90421 tttcttgctg ccagcagttt ggccccagat gatcgccgcc gagaataatg cgttcgcgtg
    90481 caaacccaac tttatcggca atcgtaaaaa caaattcgcg aaagtctgcc ggtgtcattc
    90541 cggtataacc gccaaattga ttgacctggt ttgacgttgc ttcaatcagc actttgcgcg
    90601 tgctgttgcg atcaaatgcc agcgccgctt cgataaccaa cggatgggca gaacagactg
    90661 aacatatgcc gatatgttca ccagctttat gccgggcaat taacgttttc atgttttttc
    90721 cttattaaat ggcaggtgcg ttatgccctg ccctcgcagc cacaatcggc aatcactttg
    90781 ctcaccacat cgcgcattgc ggatttagcc gactgcaaat aatcccgggg ctcggtcgct
    90841 tcagggtgct cggtcaggta attttttaac gcctgcgaga aggcattttt cagctccgtt
    90901 gcaacgttga ttttgcatat ccccagtttg atggtttgct gaatatcctt agtcgataac
    90961 cctgacgcgc catgcagcac cagcggtaag ttcacccact ggcgaatgtt ctccagtcta
    91021 gaaaaatcaa gcgccggtgc gctggcatac atcccatgag ccgtgccgat ggcgaccgcc
    91081 agggaatcaa ttccggttgc ctcggcaaat tcacgcgcct gagcggggtt ggtataaaaa
    91141 gcatcggctt cattgacttg cacatcatct tcctggccgc caagttgccc cagctccgct
    91201 tcgacgctga catcaaagcg atggcaaaaa tccaccacct ctttgacccg tgaaatattt
    91261 tgcgcaaaag gcaaatgcga ggcgtcaatc atgactgagc gcacgccaga acgaaccttc
    91321 tgagcgatat cgtcaaattt cgtgtgatgg tcgagatgaa ttgccagtgg atggtgatat
    91381 tgcttcgcca tcgcgctgac cagcgccaac agattttctg taccagcatg agtaaatgtg
    91441 ccaggcgttc cggcgatgat gaccggcgca tgcaggttgg cagcggtttc caccaccact
    91501 tgcatcgttt cgagattgtg aatattgaat gccggaaccg cataaccgcc gcgctgtgcg
    91561 ttgttcagca tctgctttgt cgataccacg tgcattttca tatcctgtcg tttgttttcg
    91621 ttttcaaaat ataatgaaat tatttgtttt taaatatcga gataacgatc acaaaaacga
    91681 caatatgaaa attattcgag gagtgaaagg caaaaaaacg gcctcccgat agggaagccg
    91741 tagcaaagtg cgcgtgtttt tatgccggat gcggtgtaaa catacgtggc agtgctatgt
    91801 aggcatgata agacgcttcc gcgtcgcatc aggcataggt tgccggatgc agtgtaaacg
    91861 ccttatccgt cctacggggt ggtgttgttc gtataaggcg tatcaggcaa tagtaatttt
    91921 gctatcgaga taaacgtcct gcacggcgtt aatcagtttc acgccgtcag ccatcgattt
    91981 cttgaacgcc ttacgtccaa gaatcagccc cattccgcca gcgcgtttgt tgataaccgc
    92041 agtacgcact gcatcactga ggtcagtttc accgcctgca gcaccgccgg agtttatcaa
    92101 cccagcccgg cccatatagc agttagctaa ctgataacgc accagatcaa tcgggttttc
    92161 gctggttaac ttgctgtaca cgcgatcgtc ggtataaccg taattaatcg ctttatagcc
    92221 gccgttattt tccgccattt tttgtttgac gatatctgcg ccgatggttg ccgccagatg
    92281 gtttgcctga ccggtcaggt cggcggaaac atggtaatca acgccatctt tcttaaaggc
    92341 ggagttacgc aaataggccc acagcacggt caccatgccc agctcatgcg cacgttcaaa
    92401 agccgcagaa atttcttcaa tctggcgacg tgactcttcc gagccaaaat agatagtcgc
    92461 accaaccgcc accgcgccca tgttgaaagc ctgctccacg ctggcataca gcgtttgatc
    92521 gtaggtattc gggtaactta gcgtctcgtt gtgattaagt ttgacgagaa atggaatgcg
    92581 atgcgcatag cgccgcgata ccgacgccaa cacgccgtaa gttgatacca cacagttaca
    92641 gcccgcttcg atcgccagtt caacaatgtt tttcgggtca aagtagagcg ggttagcagc
    92701 aaatgaagct ccggcagagt gctcaacgcc ctggtcaacc ggcagaatag aaagatatcc
    92761 tgtgccagcc agacgcccgg tgttgtacaa cgtctgcata ttacgtaaca ccgctggcgg
    92821 gcgattattg tcaatcatta cgcggtctac gtagtcatgt ccggggagat aaagctggtc
    92881 agaaggaatt gtcatacaac ggtgctgtaa aaggttgtcg gcgtctttgc caagcaactg
    92941 cgcaatatct gtcattacta tgctcccgta aattccgatt ggatatcggc tatggattgt
    93001 cctggcccgc cttttgcggg caatcataat cctggtcgtt acgggcgagt ttttccatct
    93061 tttggatgtt ttttcagcgt tttctgttgg ctcgattcat cagaaaaaat gttagcgcgg
    93121 tcaagttttc accgtaaaga tatttaaaag gtattattaa gtggtattgt catcgcgtac
    93181 cttacattac ctgtcatgaa ggaattaaaa gatgaaaaca acagcaaagc tgtcgttcat
    93241 gatgtttgtt gaatggttta tctggggcgc gtggtttgtg ccattgtggt tgtggttaag
    93301 taaaagcggt tttagtgccg gagaaattgg ctggtcgtat gcctgtaccg ccattgcggc
    93361 gatcctgtcg ccaattctgg ttggctccat cactgaccgc tttttctcgg cgcaaaaagt
    93421 gctggcggta ttgatgttcg caggcgcgct gctgatgtat ttcgctgcgc aacagaccac
    93481 ttttgccggg ttctttccgt tactgctggc ttactctcta acctatatgc cgaccattgc
    93541 gctgactaac agcatcgctt ttgccaacgt gccggatgtg gagcgtgatt tcccgcgcat
    93601 tcgtgtgatg ggcactatcg gctggattgc ctccggtctg gcatgtggtt tcttgccgca
    93661 aatactgggg tatgccgata tctcaccgac taacatcccg ctgctgatta ccgccggaag
    93721 ttctgctctg ctcggtgtgt ttgcgttttt cctgcccggc acgccaccaa aaagcaccgg
    93781 caaaatggat attaaagtca tgctcggcct ggatgcgctg atcctgctgc gcgataaaaa
    93841 cttcctcgtc tttttcttct gttcattccc gtttgcgatg ccactggcgt tctattacat
    93901 ctttgccaac ggttatctga ccgaagtcgg catgaaaaat gccaccggct ggatgacgct
    93961 cggccagttc tctgaaatat tctttatgct ggcattaccg tttttcacta aacgctttgg
    94021 tatcaaaaag gtattattgc ttggtctggt catcgctgcg atccgctatg gcttctttat
    94081 ttacggtagt gcggatgaat atttcaccta cgcgttactg ttcctcggta ttttgcttca
    94141 cggcgtaagt tacgattttt actacgttac cgcttacatc tatgtcgata aaaaagcccc
    94201 cgtgcatatg cgtaccgccg cgcaggggct gatcacgctc tgctgccagg gcttcggcag
    94261 tttgctcggc tatcgtcttg gcggtgtgat gatggaaaag atgttcgctt atcaggaacc
    94321 ggtaaacgga ctgactttca actggtccgg gatgtggact tttggcgcgg tgatgattgc
    94381 cattatcgcc gtgctgttca tgattttttt ctgcgaatcc gacaacgaaa ttacggctat
    94441 caaggtcgat gatcgcgata ttgcgttgac acaaggggaa gttaaatgaa aacagaacgt
    94501 attctcggtg ctctttatgg gcaggcgtta ggggatgcga tggggatgcc ctccgagctt
    94561 tggccacgca gccgcgttaa agcacacttt ggctggattg accgttttct gcctggacca
    94621 aaggagaata acgcggcctg ttattttaac cgcgccgaat tcaccgacga tacctcgatg
    94681 gcgctgtgtc tggcggatgc gttgctggaa cgtaaaggca agatcgatcc ggatctgatt
    94741 gggcgtaata tcctcgactg ggcgctgcgt ttcgacgcct tcaacaaaaa cgtgctaggt
    94801 ccgacctcga agattgcgct taacgccatt cgcgacggta aacccgttgc tgaactggaa
    94861 aacaacggcg taaccaacgg cgcagcgatg cgcgtctcgc cattaggttg tttgcttccg
    94921 gcgcgcgatg ttgattcctt tattgatgat gtggcgctgg cgtcgagccc gacccataaa
    94981 tccgatctgg cagttgcagg tgcggtagtc atcgcatggg cgatttctcg tgctattgac
    95041 ggagaaagct ggtcagcgat tgttgattca ctgccttcaa ttacgcgaca tgcccagcaa
    95101 aaacgcacca ccacgttcag cgcctcactg gcggcgcggc tggagattgc gctgaaaatt
    95161 gtgcgcaatg ccgacggcac cgaatccgcc agcgaacagc tttaccaggt cgttggcgca
    95221 ggtaccagca ctattgagtc cgttccgtgc gccattgcgc tggttgaact ggcacaaacc
    95281 gacccgaacc gttgcgccgt cctctgcgct aaccttggcg gcgatacaga caccatcggt
    95341 gctatggcga cggcaatctg cggcgcgttg catggcatta acgctatcga tcctgcgtta
    95401 aaggcggagc tggatgcggt aaatcagctt gatttcaacc gctatgccac agcgctggcg
    95461 aaatatcgtc aacaacggga ggcggtatga gcggcgctcg attacacacg ctgctgcctg
    95521 aattaaccac gcgtcagtcg gtgatggtcg tcggcgcggc ggtcattgac gtgatcgccg
    95581 acgcttatgc cctcccctgg cgtgggtgcg atatcgaact gaaacagcag agcgttaacg
    95641 ttggcggctg cgcactgaat attgccgtgg cgttaaagcg cctcggcatc gaagcgggta
    95701 atgccttgcc gctcggtcag ggggtatggg cggagattat tcgcaaccgg atggcgaaag
    95761 aggggttaat cagcctgatc gataacgccg aaggcgataa cggctggtgt ctggcgctgg
    95821 ttgagccgga tggcgaacgt acttttatgt cattcagcgg tgtggaaaat cagtggaatc
    95881 gccagtggct ggcgcgatta accgttgcgc ctggcagcct gctctatttt tccggttatc
    95941 aactggcctc gccctgcggc gaattgttag tggaatggct ggaagagctg caagacgtga
    96001 cgccgtttat cgattttggc ccacgtattg gcgatatccc ggacgcatta ctggcgcgga
    96061 tcatggcctg tcgaccttta gtgtcactca atcgtcaaga ggctgagatt gccgccgaac
    96121 gttttgcttt atccgcagag ataacaacac ttggcaagca atggcaggag aaatttgccg
    96181 cgccgttgat cgttcgtctc gataaagaag gcgcatggta tttcagcaac gacgcttctg
    96241 gctgcattcc ggcatttcca acgcaagttg tcgacaccat tggtgcgggc gacagtcatg
    96301 ccggtggcgt acttgccggg ctggcctctg gtctgccact ggcggatgcc gtattactgg
    96361 gcaatgcagt ggcgtcatgg gttgtcgggc atcggggcgg tgattgtgcg ccaacgcgcg
    96421 aggaactact cctcgcacac aaaaacgtat agatcgctgc gacagtggct aatgctgtac
    96481 tcaataggcc gttgctgttg gtcaagcgcc acttgcttga tcaccagcac cggtattttg
    96541 ctatctaact gaatatgtga ctgaaactcg gcatccggca tccgggcgct aacgcgggaa
    96601 cgcgtacgtt gtgggtaaat gtgctggctg cggaaatagt cataaagtga aatcccgatg
    96661 gcatcaacat catgaattaa atgcgccgga acccacgatt cctcaatcga taccgcttct
    96721 tcatcgacat agcgaatacg cttaagcaaa aagacatcac ttcctgcttc gaccgccagc
    96781 tgctgcgcga cttcttcggg acatttcacg acacgcttgt taacccatag cgtatcgggc
    96841 tttttcccgc gcaataccac ctgctgagaa aaacctcgcg cttctttcaa cgagtattcg
    96901 aagatgttgt tgatctgcgt gccgtaaccg cgcgaacgcg tcaccacacc ctcttcttcc
    96961 agcgcctgca tcgccttgcg caccgtaatg cgcgaaacgc cggttaactg acttaaatca
    97021 cgctcaccgg gcaaaatatt gccatgctcc agcaccccgc tgcgcacggc attttttacc
    97081 gtttcggcaa acttaatata aagcggcgtg ttatccgccg ctaaaatacg ctcgttcagt
    97141 tgggcaatca gctgggtatg cgcttgttcc atttgtcttg ttcctgccgg ggagtctggt
    97201 gggagtatat cactgcttct tatttaaggc gtttctttaa tcccatcaac gaatgcctgc
    97261 aactcctcca ccgtgccatt aaatacatta aaatccaccg gaccattgat gccatctacc
    97321 tgtccacggt cggaatgctg ccagaagcgc caggccatgc cgtcattgtc cggacgacgt
    97381 tgataatagt gagccaccca ccacggatat tcattgaaat agcccgccag attggtgtga
    97441 taaaaaacgg ctcctgagta aataatcggc ttttttcccg tacttttttc gaccattttt
    97501 agccactgac ttactcgttt gcgtaattct tttgccgata attttccccg ttcttctacg
    97561 tccagtaccg cagggaaatc gccttgtgag aaatccaccg tttgcagaaa taatcgtgcc
    97621 tgaaccggcg ctgctaccga cggggagaaa taatgatacg ccccgcgcag caggccattt
    97681 tcgcggctta gttgccagtt acgcgaaaaa tacgggtcca ccagcttttc gccttccgtc
    97741 gccttaataa aagcaaactg taagcggata ccgttgtcgc gcatttttgc cacccgctgc
    97801 cagtcgatcc gctcctgcca gcgagaaaca tctattccgt gaatggtgta actggcagga
    97861 atgcgaatag cgaaagattt aaccgggcga taaccgtaga aatggatgta gtctgtaatc
    97921 tgaactgctg tcgaatagaa aaaattcacc ttctgacgcg gataaattgc aacgatggaa
    97981 attagcccaa gagcgcataa tagagaggtg agtttttttc gactggtaat tcttagctgc
    98041 attggtttca tccctgaatg tcagtgccaa aggctgacaa taaccaaagc agctatagta
    98101 cggtgctcac caccaggcgt ggaagtggtg aaccggacca ataccgtgac caacttccag
    98161 cgtgtcggcc tgggctaatg ctgatgaaag ccagctttta gcctcctgta cggtgtcagc
    98221 ccagtttgta tggcgcgggc gtagtgcagc caacgccgca gagagcgtac aaccagtgcc
    98281 gtgggtgttt ttggtcataa tgcgcggtgc ggtaaaccgt tgttcaccct cgcgggtaaa
    98341 cagccagtcc gggctttgct catcatccag atgaccacct ttcattagca ctgcgccaca
    98401 gcccatcgcc aacagcgatc gcccttgttc cagcatttcc tgttcggtgc gcgcgtgtgg
    98461 cgcgtcgagc aaggcggcag cttcgggcaa gtttggcgtt attaatgaaa cctgtggcaa
    98521 taatcgactg cgcagcgtag caaccgccga aggtgaaagc agcgggtcgc cgctttttgc
    98581 cagcataacg gtgtcgagta ccacgtattg gatctgataa cgttgcaacc gttctgccac
    98641 cgcttcaaca atatcggttt ccgccaacat accgatttta gtggtgtcga ttcgcacatc
    98701 gctgaacacc gaatcgagct gggcggcgac aaaatcagac tcaatgcgat acaccgactg
    98761 tacgccacgg gtattttgcg ccaccagtgc agtaataact gagcaaccat aagcgccaag
    98821 tgccgagaag gttttaagat cggcctgaat ccccgcacca ccactcggat cagtaccggc
    98881 aatcgtcaga gcgttaattc gtttcatgcc tgcacctcct gcgtcaattg ccagagcgca
    98941 tcaaggaaat gtggaacaaa actgcctggc ccctcgcttc tggcgactgc gcgttctccg
    99001 gcttgtttca tccagtgaca ggcagatgcg acattttcca gcgtatcgcc tggtaacgca
    99061 cagcaggcag cgacaaccgc cgataatgca cagccagttc ctaccacttt ggtcattaac
    99121 ggatcgccac cgtgaatacc aatgatacga tgtccatcgg taacataatc catctcgcca
    99181 gtgaccacga cgattgcgcc agtttcccgt gccagtgttt gtgcagcggg tatcgcgtta
    99241 gctgcggcgt cagtggtatc cactccccgt ccaccattag caatgccagc taatgccatg
    99301 atttccgaag cattaccacg tatagcggtt ggcttatgag gcagaagttc cagacaaaaa
    99361 cggcggcgat aatcgagtgc accaaccgct actggatcaa gcgtccaggg tgtttgagag
    99421 ctttttgctt gctcaacggc ggcacacatc gactgtgcgc gtagctgcgt cagcgtgcca
    99481 acgttaatca gcaacgcact agcaatagcc gcaaactgac tggcctcttc ggtttcgata
    99541 accatcgctg gcgatgcacc gagcgccagc aaggtattgg cagtaaaggt ttgcaccaca
    99601 tcgttggtca tgcagtgcac aagaggggaa tgttggtgaa aaaggtgtaa cgcgtgcgca
    99661 gattgcgctg aactctgcag gtcgacttgc atagtttgct cctgccataa cgtgaagaag
    99721 caatgacctg gtggtccgtg acttccctac gctggcatta tccagatcag gtaatacggg
    99781 tatttctcag ccttcacaaa gaagggcacc ccgagtcatt taaaacaaaa tcaaaagatt
    99841 gcgattaacg tcccgttaat ccctgttctg gatcatgcca gcgggaagcc aaagactcaa
    99901 ccctaaaaaa tcctctgtgt cccagtttgt gtctcacgtt gtggcccaca gataaatggc
    99961 aggcacaaaa aaaccgccca taaggcggct taagtaaatt attcagtcgt gaagatttaa
   100021 atgaaatcta ttttctgcat acgctttctt catgcagtcg aagtgctttt gccaattcca
   100081 attggaatgc aaaggaaaga cgggaacggc tgatcttgat accgtcaata atgatgtatg
   100141 tagggtaaac agtgaccatg cggcccaagt attggaagtg tttagggtgg tttactttat
   100201 cgttattcat tgtgtgccat ccgtctgggt gggggtaatc ccggcaacgg atgattgatc
   100261 taaaatcgat caaaatcaat aacttaacag atcaccaaat ccaggggggt gtacattggc
   100321 gagcctccct cagcctaacc tatacacgac cataaaatag gggcggattc cttccagttg
   100381 ggtgggaaaa tatctgggag tttggataca gtagccaggc agggtaacca gacccataga
   100441 tgagaatgtt tattattccc aaatatccag gcgaggggcc tgctgtggct ctctttacgc
   100501 gccgctgtgg cgtcttctct cctctttcta tacaatccca tagctaaccc attgcgaggc
   100561 ttacagagcg ttacagagcg tccgtgtgaa tattgcataa atgaaagtgg tgaaaggtcc
   100621 gatttggtca acttttagac aactatttaa catatgcgca acaggttaga cctgtaccct
   100681 ttcaataggt ccgcctcctg ggcgctgtgt acgccccata actgtggctc ttctgtaccc
   100741 atccgggagc cattccacag agtaaactgt aaaactgatc tgcctgtgag taacgccctt
   100801 ttcctgtgga taacttccac gcactaaccc cataaactcc ccttttgagg cgtccgcctc
   100861 ttcaggccct ttcttgtggc aaaaacacaa aaagggttta gggcggtggc taccgcccct
   100921 gtagatggga atgagtcgca ctcgaaagag ggattgagaa ccaattctca agtgataatc
   100981 gatctcattt gtgttcgaag ttttccccag aaaaataatt ttggggttaa gcatgtaaaa
   101041 tgctacacac ttgcactttg taatgataat taattgacca taaaaacaaa tagttagaag
   101101 cgctggggga gtcccactag ttacacaatt gattactttt tgagctaaaa ctgattcttt
   101161 taccgggtat acaatccatt tgatcgccct ttaccacata tttaaacgga tttaaagcca
   101221 tttatttagg gggttagcaa agtgttgatt tcatggttac agataacaaa aaagcccgcc
   101281 gggggttagc cgggggcctg tggttggggg tgtcaaacgt ggttagttcg gcccgccctg
   101341 cattagcatg ttgaaagcct gctgattatt gctctcaact tcagagcgta ccagatcctt
   101401 aacctatcca tcctgcactt tcacattaac gttcacgttt agcggctggt ttagccacgc
   101461 tggcggcgtc atcagtggat tacctgccat atcaacttta agctgtggcg ctgtaatcgt
   101521 cggcgtagga ggtacataag ttggattgga gtaagagctt acccaccctg ttttatctgc
   101581 tggtttggca aagtctggat tagtcggaag gtctggacta tggaggaaat cccacagttt
   101641 acccagcggg ctatcttttt tcagattgcc cccggcggtg gtgtcctgtc catacatggc
   101701 gtcgttagcg tcatgacctt atcccaggca taatccccac ctaccgaacc gaccgcaatg
   101761 ctccagccaa caggaccgcc agagagagcc gccgcgccgc ctaccttgcc aactttcgga
   101821 ccccgacccg gtttgtttgg cttgtcttta ccttccccac cagatccgcc agtagtagcg
   101881 gcttcaatgc caccaatagc ggcgatccct ttcatgaccc ccagtaattt ggttagtggg
   101941 ttaagcatgg tcaacaacca tttaaaggct acgcccaact tccagataga cccggcgaac
   102001 atagccaccc cggcggcgta tgctgccatt tcgccccagg ctttaagctg ctcaccagtg
   102061 atccccatct tgctggcgta atactcaata atgcggaagg tcaggatcac agtgtcatgc
   102121 aactctgtaa acgcatctgt ggcaccctca acgattttcc cggcaatatg cccgaacatc
   102181 tcaaaggccc caccagagcc gttaacagcg gcgctgatag cgtcgaaagc gctggttaat
   102241 tcgttgccga agccagaagc aaagaagatg ttcatcgcgt tctgcatact ggtttgcagg
   102301 cgctgccagc ttgcccggtt ggacttcata gccttatcca gagcgccgcc gttacgagct
   102361 gcggctttca tctgtttagc cacttccggg aggatgtcct tagagaacag cttcccttgt
   102421 tgcatcaggt caaacagatc cttttctgta aggttggttg tccctttcat ctggttgaga
   102481 gccttaacga acagacccac agcccccg
//
LOCUS       DAJVUY010000002        79463 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.002, whole genome shotgun sequence.
ACCESSION   DAJVUY010000002 DAJVUY010000000
VERSION     DAJVUY010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 79463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 79463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..79463
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.002"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            414..1616
                     /gene="proV"
                     /locus_tag="OQQ72_000095"
     CDS             414..1616
                     /gene="proV"
                     /locus_tag="OQQ72_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HCS2009969.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            1609..2673
                     /gene="proW"
                     /locus_tag="OQQ72_000096"
     CDS             1609..2673
                     /gene="proW"
                     /locus_tag="OQQ72_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HCS2009970.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPSIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            2731..3723
                     /gene="proX"
                     /locus_tag="OQQ72_000097"
     CDS             2731..3723
                     /gene="proX"
                     /locus_tag="OQQ72_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HCS2009971.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTLLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKEPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            4015..5199
                     /locus_tag="OQQ72_000098"
     CDS             4015..5199
                     /locus_tag="OQQ72_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2009972.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHITNQTVIYRIHPDAR
                     NRLTAGYMTSYFIGGAAGSLISASAWQHGGWAGVCLAGATIALVNLLVWWRGFHRQEA
                     AN"
     gene            5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ72_000099"
     CDS             5323..6060
                     /gene="ygaZ"
                     /locus_tag="OQQ72_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine exporter subunit YgaZ"
                     /protein_id="HCS2009973.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ72_000100"
     CDS             6050..6385
                     /gene="ygaH"
                     /locus_tag="OQQ72_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HCS2009974.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ72_000101"
     CDS             6476..7006
                     /gene="emrR"
                     /locus_tag="OQQ72_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HCS2009975.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ72_000102"
     CDS             7133..8305
                     /gene="emrA"
                     /locus_tag="OQQ72_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HCS2009976.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYP
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ72_000103"
     CDS             8322..9860
                     /gene="emrB"
                     /locus_tag="OQQ72_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HCS2009977.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWECGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC
                     ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR
                     RLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP
                     ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL
                     EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG
                     GGAH"
     gene            complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ72_000104"
     CDS             complement(9924..10439)
                     /gene="luxS"
                     /locus_tag="OQQ72_000104"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HCS2009978.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ72_000105"
     CDS             complement(10589..12145)
                     /gene="gshA"
                     /locus_tag="OQQ72_000105"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS2009979.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTQATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCCDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGKAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(12218..12646)
                     /locus_tag="OQQ72_000106"
     CDS             complement(12218..12646)
                     /locus_tag="OQQ72_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2009980.1"
                     /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ72_000107"
                     /pseudo
     CDS             complement(12643..13198)
                     /gene="yqaB"
                     /locus_tag="OQQ72_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
     gene            complement(13346..13422)
                     /locus_tag="OQQ72_000108"
     tRNA            complement(13346..13422)
                     /locus_tag="OQQ72_000108"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13386..13388),aa:Arg,seq:acg)
     gene            complement(13621..13697)
                     /locus_tag="OQQ72_000109"
     tRNA            complement(13621..13697)
                     /locus_tag="OQQ72_000109"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13661..13663),aa:Arg,seq:acg)
     gene            complement(13895..13971)
                     /locus_tag="OQQ72_000110"
     tRNA            complement(13895..13971)
                     /locus_tag="OQQ72_000110"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13935..13937),aa:Arg,seq:acg)
     gene            complement(13975..14067)
                     /locus_tag="OQQ72_000111"
     tRNA            complement(13975..14067)
                     /locus_tag="OQQ72_000111"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14031..14033),aa:Ser,seq:gct)
     gene            complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ72_000112"
     CDS             complement(14383..14568)
                     /gene="csrA"
                     /locus_tag="OQQ72_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HCS2009981.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ72_000113"
     CDS             complement(14803..17433)
                     /gene="alaS"
                     /locus_tag="OQQ72_000113"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCS2009982.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKDANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANISSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ72_000114"
     CDS             complement(17561..18061)
                     /gene="recX"
                     /locus_tag="OQQ72_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HCS2009983.1"
                     /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYDEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ72_000115"
     CDS             complement(18304..19365)
                     /gene="recA"
                     /locus_tag="OQQ72_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HCS2009984.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ72_000116"
     CDS             complement(19445..19942)
                     /gene="pncC"
                     /locus_tag="OQQ72_000116"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HCS2009985.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ72_000117"
     CDS             complement(20087..21172)
                     /gene="mltB"
                     /locus_tag="OQQ72_000117"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HCS2009986.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ72_000118"
                     /gene_synonym="gutA"
     CDS             21428..21991
                     /gene="srlA"
                     /locus_tag="OQQ72_000118"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HCS2009987.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSQGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ72_000119"
                     /gene_synonym="gutE"
     CDS             21988..22953
                     /gene="srlE"
                     /locus_tag="OQQ72_000119"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HCS2009988.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGMGSA
                     VAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVM
                     LALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFI
                     PVGLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ72_000120"
                     /gene_synonym="gutB"
     CDS             22964..23335
                     /gene="srlB"
                     /locus_tag="OQQ72_000120"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HCS2009989.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ72_000121"
     CDS             23339..24118
                     /gene="srlD"
                     /locus_tag="OQQ72_000121"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HCS2009990.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLVEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ72_000122"
                     /pseudo
     CDS             24223..24581
                     /gene="gutM"
                     /locus_tag="OQQ72_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
     gene            24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ72_000123"
                     /gene_synonym="gutR"
     CDS             24648..25421
                     /gene="srlR"
                     /locus_tag="OQQ72_000123"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HCS2009991.1"
                     /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ72_000124"
     CDS             25414..26379
                     /gene="gutQ"
                     /locus_tag="OQQ72_000124"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
                     /protein_id="HCS2009992.1"
                     /translation="MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGK
                     VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA
                     KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT
                     LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASV
                     MDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTTGGTTL
                     QAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII"
     gene            complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ72_000125"
     CDS             complement(26376..27890)
                     /gene="norR"
                     /locus_tag="OQQ72_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HCS2009993.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            28077..29516
                     /gene="norV"
                     /locus_tag="OQQ72_000126"
     CDS             28077..29516
                     /gene="norV"
                     /locus_tag="OQQ72_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HCS2009994.1"
                     /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALAPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            29513..30646
                     /gene="norW"
                     /locus_tag="OQQ72_000127"
                     /pseudo
     CDS             29513..30646
                     /gene="norW"
                     /locus_tag="OQQ72_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
     gene            complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ72_000128"
     CDS             complement(30774..33026)
                     /gene="hypF"
                     /locus_tag="OQQ72_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HCS2009995.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ72_000129"
     CDS             complement(33179..33706)
                     /gene="hydN"
                     /locus_tag="OQQ72_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HCS2009996.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ72_000130"
     CDS             complement(33855..34865)
                     /gene="ascG"
                     /locus_tag="OQQ72_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator AscG"
                     /protein_id="HCS2009997.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCNAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ72_000131"
     CDS             35125..36582
                     /gene="ascF"
                     /locus_tag="OQQ72_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HCS2009998.1"
                     /translation="MAKNYAALARSEIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTPRRI
                     GVGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASADIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYSIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAAQARKHQSVQPTVAKEVSLN"
     gene            36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ72_000132"
     CDS             36591..38015
                     /gene="ascB"
                     /locus_tag="OQQ72_000132"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase AscB"
                     /protein_id="HCS2009999.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ72_000133"
     CDS             complement(38174..38644)
                     /gene="hycI"
                     /locus_tag="OQQ72_000133"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HCS2010000.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ72_000134"
     CDS             complement(38637..39047)
                     /gene="hycH"
                     /locus_tag="OQQ72_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase assembly protein HycH"
                     /protein_id="HCS2010001.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ72_000135"
     CDS             complement(39044..39811)
                     /gene="hycG"
                     /locus_tag="OQQ72_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycG"
                     /protein_id="HCS2010002.1"
                     /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVD
                     CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS
                     APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL
                     GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDFLTQ
                     LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEVRIR"
     gene            complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ72_000136"
     CDS             complement(39811..40353)
                     /gene="hycF"
                     /locus_tag="OQQ72_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HCS2010003.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCLVPSDRIELTRHMKEAI"
     gene            complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ72_000137"
     CDS             complement(40363..42072)
                     /gene="hycE"
                     /locus_tag="OQQ72_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycE"
                     /protein_id="HCS2010004.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ72_000138"
     CDS             complement(42090..43013)
                     /gene="hycD"
                     /locus_tag="OQQ72_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HCS2010005.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ72_000139"
                     /pseudo
     CDS             complement(43016..44401)
                     /gene="hycC"
                     /locus_tag="OQQ72_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311606.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
     gene            complement(44387..44647)
                     /locus_tag="OQQ72_000140"
                     /pseudo
     CDS             complement(44387..44647)
                     /locus_tag="OQQ72_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708526.1"
                     /note="regulates several genes involved in the formate
                     hydrogenlyase system; seems to prevent binding of FhlA
                     transcriptional activator to the activator sequence of hyc
                     operon; incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ72_000141"
     CDS             44859..45209
                     /gene="hypA"
                     /locus_tag="OQQ72_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS2010006.1"
                     /translation="MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ72_000142"
     CDS             45213..46085
                     /gene="hypB"
                     /locus_tag="OQQ72_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HCS2010007.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ72_000143"
     CDS             46076..46348
                     /gene="hypC"
                     /locus_tag="OQQ72_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HCS2010008.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ72_000144"
     CDS             46348..47469
                     /gene="hypD"
                     /locus_tag="OQQ72_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HCS2010009.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ72_000145"
     CDS             47466..48476
                     /gene="hypE"
                     /locus_tag="OQQ72_000145"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HCS2010010.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ72_000146"
     CDS             48550..50628
                     /gene="flhA"
                     /locus_tag="OQQ72_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
                     /protein_id="HCS2010011.1"
                     /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA
                     DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRRILSRPDTLHCSYEEFC
                     ETWPQLVAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV
                     SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF
                     DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL
                     HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR
                     QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL
                     KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL
                     FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN
                     KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF
                     TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI
                     ALPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK
                     RLGIDKSALI"
     gene            complement(50665..51018)
                     /locus_tag="OQQ72_000147"
     CDS             complement(50665..51018)
                     /locus_tag="OQQ72_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HCS2010012.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(51095..51229)
                     /locus_tag="OQQ72_000148"
     CDS             complement(51095..51229)
                     /locus_tag="OQQ72_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010013.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ72_000149"
     CDS             51305..53866
                     /gene="mutS"
                     /locus_tag="OQQ72_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCS2010014.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ72_000150"
     CDS             53972..54628
                     /gene="pphB"
                     /locus_tag="OQQ72_000150"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS2010015.1"
                     /translation="MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETD
                     LLISVGDNIDRGPESLDVLRLLNQPWFISVKGNHEAMELDAFATGDGNMWLASGGDWF
                     FDLNDSEQQEAIDLLLKFHHLPHIIEITNDIIKYVIAHADYPGDEYLFGKEIAESELL
                     WPVYRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKIR
                     "
     gene            complement(54679..55446)
                     /locus_tag="OQQ72_000151"
     CDS             complement(54679..55446)
                     /locus_tag="OQQ72_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS2010016.1"
                     /translation="MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLE
                     QQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGT
                     TTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
                     LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWL
                     ALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            55642..56550
                     /locus_tag="OQQ72_000152"
     CDS             55642..56550
                     /locus_tag="OQQ72_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS2010017.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGDAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            56547..57809
                     /locus_tag="OQQ72_000153"
     CDS             56547..57809
                     /locus_tag="OQQ72_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HCS2010018.1"
                     /translation="MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAID
                     ALVISLKTRSCPVVEATQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDAL
                     MDALDTPFTVFSPALSVNGRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEA
                     QSTGRCGVVSAHVFEQGVDAVRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPL
                     VTGGSGLAIGLARQWAQENGNQAREAGHPLAGRGVVLSGSCSQMTNRQVAHYRQIAPA
                     REVDVARCLSTETLAAYAHELAEWVLGQESVLAPLVFATASTDALAAIQQQYGAQKAS
                     QAVETLFSQLAARLAAEGVTRFIVAGGETSGVVTQSLGIKGFHIGPTISPGVPWVNAL
                     DKPVSLALKSGNFGDEAFFSRAQREFLS"
     gene            57806..58444
                     /locus_tag="OQQ72_000154"
     CDS             57806..58444
                     /locus_tag="OQQ72_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS2010019.1"
                     /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL
                     LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST
                     WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
                     LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS"
     gene            58449..59225
                     /locus_tag="OQQ72_000155"
     CDS             58449..59225
                     /locus_tag="OQQ72_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS2010020.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAMEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR"
     gene            59314..60678
                     /locus_tag="OQQ72_000156"
     CDS             59314..60678
                     /locus_tag="OQQ72_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HCS2010021.1"
                     /translation="MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(60772..61763)
                     /gene="rpoS"
                     /locus_tag="OQQ72_000157"
                     /pseudo
     CDS             complement(60772..61763)
                     /gene="rpoS"
                     /locus_tag="OQQ72_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081498.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
     gene            complement(61826..62917)
                     /gene="nlpD"
                     /locus_tag="OQQ72_000158"
     CDS             complement(61826..62917)
                     /gene="nlpD"
                     /locus_tag="OQQ72_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HCS2010022.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(63057..63683)
                     /gene="pcm"
                     /locus_tag="OQQ72_000159"
     CDS             complement(63057..63683)
                     /gene="pcm"
                     /locus_tag="OQQ72_000159"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HCS2010023.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(63677..64438)
                     /gene="surE"
                     /locus_tag="OQQ72_000160"
     CDS             complement(63677..64438)
                     /gene="surE"
                     /locus_tag="OQQ72_000160"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCS2010024.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            complement(64419..65468)
                     /gene="truD"
                     /locus_tag="OQQ72_000161"
     CDS             complement(64419..65468)
                     /gene="truD"
                     /locus_tag="OQQ72_000161"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HCS2010025.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQRKALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            complement(65465..65944)
                     /gene="ispF"
                     /locus_tag="OQQ72_000162"
     CDS             complement(65465..65944)
                     /gene="ispF"
                     /locus_tag="OQQ72_000162"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HCS2010026.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            complement(65944..66654)
                     /gene="ispD"
                     /locus_tag="OQQ72_000163"
     CDS             complement(65944..66654)
                     /gene="ispD"
                     /locus_tag="OQQ72_000163"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HCS2010027.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            complement(66673..66984)
                     /gene="ftsB"
                     /locus_tag="OQQ72_000164"
     CDS             complement(66673..66984)
                     /gene="ftsB"
                     /locus_tag="OQQ72_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HCS2010028.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            complement(67178..67501)
                     /locus_tag="OQQ72_000165"
     CDS             complement(67178..67501)
                     /locus_tag="OQQ72_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HCS2010029.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            complement(67551..68156)
                     /gene="cysC"
                     /locus_tag="OQQ72_000166"
     CDS             complement(67551..68156)
                     /gene="cysC"
                     /locus_tag="OQQ72_000166"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCS2010030.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            complement(68156..69583)
                     /gene="cysN"
                     /locus_tag="OQQ72_000167"
     CDS             complement(68156..69583)
                     /gene="cysN"
                     /locus_tag="OQQ72_000167"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HCS2010031.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTHIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKALPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     PSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYPVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            complement(69585..70493)
                     /gene="cysD"
                     /locus_tag="OQQ72_000168"
     CDS             complement(69585..70493)
                     /gene="cysD"
                     /locus_tag="OQQ72_000168"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCS2010032.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST
                     TSERQGRVIDRDQAGSMELKKRQGYF"
     gene            70745..71782
                     /gene="iap"
                     /locus_tag="OQQ72_000169"
     CDS             70745..71782
                     /gene="iap"
                     /locus_tag="OQQ72_000169"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HCS2010033.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            complement(71989..72282)
                     /gene="cas2"
                     /locus_tag="OQQ72_000170"
     CDS             complement(71989..72282)
                     /gene="cas2"
                     /locus_tag="OQQ72_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HCS2010034.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(72282..73202)
                     /gene="cas1e"
                     /locus_tag="OQQ72_000171"
     CDS             complement(72282..73202)
                     /gene="cas1e"
                     /locus_tag="OQQ72_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
                     /protein_id="HCS2010035.1"
                     /translation="MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI
                     PVGSVACIMLEPGTRVSHAAVHLAATVGTLQVWVGEAGVRVYSSGQPGGARADKLLYQ
                     AKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKW
                     NGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYD
                     IADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGE
                     IEPPQPAPDMLPPAIPEPETLGDSGHRGRG"
     gene            complement(73199..73849)
                     /gene="cas6e"
                     /locus_tag="OQQ72_000172"
     CDS             complement(73199..73849)
                     /gene="cas6e"
                     /locus_tag="OQQ72_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HCS2010036.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDISVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            complement(73831..74577)
                     /gene="cas5e"
                     /locus_tag="OQQ72_000173"
     CDS             complement(73831..74577)
                     /gene="cas5e"
                     /locus_tag="OQQ72_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HCS2010037.1"
                     /translation="MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSLSALLGLLAAGV
                     GIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPE
                     LLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPL
                     APLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDV
                     PLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
     gene            complement(74588..75666)
                     /gene="cas7e"
                     /locus_tag="OQQ72_000174"
                     /pseudo
     CDS             complement(74588..75666)
                     /gene="cas7e"
                     /locus_tag="OQQ72_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311639.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas7/Cse4/CasC"
     gene            complement(75681..76249)
                     /gene="casB"
                     /locus_tag="OQQ72_000175"
                     /pseudo
     CDS             complement(75681..76249)
                     /gene="casB"
                     /locus_tag="OQQ72_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311640.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse2/CasB"
     gene            complement(76246..77808)
                     /gene="casA"
                     /locus_tag="OQQ72_000176"
     CDS             complement(76246..77808)
                     /gene="casA"
                     /locus_tag="OQQ72_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cse1/CasA"
                     /protein_id="HCS2010038.1"
                     /translation="MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADL
                     QGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFM
                     QDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
                     PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDD
                     LVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDA
                     LLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNS
                     KNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIP
                     KLRLAAQAASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIE
                     EGQDPDELLSKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNA
                     NAAREKKQEAAE"
     gene            complement(77906..79463)
                     /gene="cas3"
                     /locus_tag="OQQ72_000177"
                     /pseudo
     CDS             complement(77906..79463)
                     /gene="cas3"
                     /locus_tag="OQQ72_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142534.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="CRISPR-associated helicase Cas3'"
BASE COUNT        18740 a        21556 c        20301 g        18866 t
ORIGIN      
        1 gctcctctta tgtgatgggg aaagcggttg aaacagaaga tgaagactgg aatttctgag
       61 ggtgttattt tcaaaaatat cactacccgc agcagggaaa taattcccgc caaatagctt
      121 tttatcacgc aaatattctg tagtgatcta cactgagact ctgttgcatt attcgcctga
      181 aactacaata ttcaggcgtt ttttcgctat ctatgacaaa aaatatcaac ttttctcgat
      241 ttgctctcag cccttatatc acgggaaatt ccggcgattt gctcgcatca atattcatgc
      301 cacatttgcc ctcaggggtt gcctcagatt ctcagtatgt tagggtagaa aaaagtgact
      361 atttccattg ggtaatatat cgacataaac aaataaagga atctttctat tgcatggcaa
      421 ttaaattaga aattaaaaat ctttataaaa tatttggcga gcatccacag cgagcgttca
      481 aatatatcga acaaggactt tcgaaagaac aaattctgga aaaaactggg ctatcgcttg
      541 gcgtaaaaga cgccagtctg gccattgaag aaggcgagat atttgtcatc atgggattat
      601 ccggctcggg taaatccaca atggtacgcc ttctcaatcg cctgattgaa cccacccgcg
      661 ggcaagtgct gattgatggt gtggatattg ccaaaatatc cgatgccgaa ctccgtgagg
      721 tgcgcagaaa aaagattgcg atggtcttcc agtcctttgc cttaatgccg catatgaccg
      781 tgctggacaa tactgcgttc ggtatggaat tggccggaat taatgcagaa gaacgccggg
      841 aaaaagccct tgatgcactg cgtcaggtcg ggctggaaaa ttatgcccac agctacccgg
      901 atgaactctc tggcgggatg cgtcaacgtg tgggattagc ccgcgcgtta gcgattaatc
      961 cggatatatt attaatggac gaagccttct cggcgctcga tccattaatt cgcaccgaga
     1021 tgcaggatga gctggtaaaa ttacaggcga aacatcagcg caccattgtc tttatttccc
     1081 acgatctcga tgaagctatg cgtattggcg accgaattgc cattatgcaa aatggtgaag
     1141 tggtacaggt cggcacaccg gatgaaattc tcaataatcc ggcgaatgat tatgtccgta
     1201 ccttcttccg tggcgttgat attagtcagg tattcagtgc gaaagatatt gcccgccgga
     1261 caccgaatgg cttaattcgt aaaacccctg gcttcggccc acgttcggca ctgaaattat
     1321 tgcaggatga agatcgcgaa tatggctacg ttatcgaacg cggtaataag tttgtcggcg
     1381 cagtttccat cgattcgctt aaaaccgcgt taacgcagca gcaaggtctt gatgcggcgc
     1441 tgattgatgc gccgttagca gtcgatgcac aaacgcctct tagcgagttg ctctctcatg
     1501 tcggacaggc accctgtgcg gtacccgtgg tcgacgagga ccaacagtat gtcggcatca
     1561 tttcgaaagg aatgctgctg cgcgctttag atcgtgaggg ggtaaataat ggctgatcaa
     1621 aataatccgt gggataccac gccagcggcg gacagtgccg tgcaatccgc agacgcctgg
     1681 ggtacaccgg cgactgcacc gactgacggc ggtggtgctg actggctgac cagtacgcct
     1741 gcgccaaacg tcgagcattt taatattctc gatccgttcc ataaaacgct gatcccgctc
     1801 gacagttggg tcactgaagg gatcgactgg gttgttaccc atttccgtcc cgtcttccag
     1861 ggcgtgcgcg ttccggttga ttatatcctc aacggtttcc agcaattgct gctgggtatg
     1921 cccgcaccgg tggcgattat cgttttcgct ctcatcgcct ggcagatttc cggggtcgga
     1981 atgggcgtgg cgacgctggt ttcgctgatt gccatcggcg caatcggtgc ctggtcgcag
     2041 gccatggtta ccctggcgct ggtgttaacc gccctgctgt tctgtatcgt cattggtttg
     2101 ccgctgggga tctggctggc gagaagtccg cgagcggcga aaattattcg tccactgctt
     2161 gatgccatgc agaccacgcc agcgtttgtt tatctggtgc caatcgtcat gctatttggt
     2221 atcggtaacg tgccgggcgt ggtggtgacg atcatctttg ctctgccgcc gattatccgt
     2281 ctgaccattc tggggattaa ccaggttccg gcggatctga ttgaagcctc gcgctcattc
     2341 ggtgccagcc cgcgccagat gctgttcaaa gttcagttac cgctggcgat gccgagcatt
     2401 atggcgggcg ttaaccagac gctgatgctg gccctttcta tggtggtcat tgcctcgatg
     2461 attgccgtcg gcgggctggg tcagatggta cttcgcggta tcggtcgtct ggatatgggg
     2521 cttgccaccg ttggcggcgt cgggattgtg atcctcgcca ttatcctcga tcgcctgacg
     2581 caggccgttg ggcgcgactc acgcagtcgc ggcaaccgtc gctggtacac cactggccct
     2641 gttggtctgc tgacccgccc attcattaag taactctgca cttgcccggt gacgccgggc
     2701 attatcaccc tgccaaaaaa aggaataaca atgcgacata gcgtactttt tgcgacagcg
     2761 tttgccacgc ttatctctac acaaactttt gctgccgatc tgccgggcaa aggtattact
     2821 gttaatccag ttcaaagcac catcaccgaa gaaaccttcc agacgctgct ggtcagccgt
     2881 gcgctggaga aattaggcta taccgtcaac aaacccagcg aagtagatta caacgttggc
     2941 tacaccttgc ttgcttccgg cgatgcaacc ttcaccgccg tgaactggac gccactgcat
     3001 gacaacatgt acgaagctgc cggtggcgat aagaaatttt atcgtgaagg ggtatttgtt
     3061 aacggcgcgg cacagggtta cctgatcgat aagaaaaccg ccgaccagta caaaatcacc
     3121 aacatcgcac aactgaaaga gccgaagatc gccaaactgt tcgataccaa cggcgacggt
     3181 aaagcggatt taaccggttg taatcctggc tggggctgcg aaggtgcgat caaccaccag
     3241 cttgccgcgt atgaactgac caacaccgtg acgcataatc aggggaacta cgcagcgatg
     3301 atggccgaca ccatcagtcg ctacaaagag ggcaaaccgg tgttttatta cacctggacg
     3361 ccgtactggg tgagtaatga gctgaagcca gggaaagatg tggtctggtt gcaggtgccg
     3421 ttctccgcac tgccgggcga taaaaatgcc gataccaaac tgccgaatgg cgcgaattac
     3481 ggcttcccgg tcagcaccat gcatatcgtt gccaacaaag cctggaccga gaaaaatccg
     3541 gcggcagcca aactgtttgc cattatgcag ttgccagtgg ccgatattaa cgcccagaac
     3601 gccattatgc atgacggcaa agcctcagaa ggcgatattc agggccacgt tgatggctgg
     3661 atcaaagccc accagcagca gttcgatggc tgggtgaatg aggcgctggc agcgcagaag
     3721 taatttttat tcaggcggat aaggcgtttt tgccttatcc gccgctctgt acacaatgcc
     3781 tgatgcgacg ctgacgcgtc ttatcatgcc tacaaaatac actcattccg tatggcggat
     3841 aaggcgtttt cgccgcatcc gccgttctgt gcacaatgcc tgatgcgacg ctggcgcgtc
     3901 ttatcatgcc tacaaaccac atcgcacatt tcaacaagct atctttcatc ccatattcat
     3961 caacatccgc tattattgat ttccagctta atcatcacct gatgaacaaa aataatgact
     4021 aaacctaatc atgagcttag cccggcgctg atcgtgctga tgtctatcgc caccggtctg
     4081 gcggtagcca gtaactatta cgcccagcca ttgctcgaca ccatcgcgcg taacttttcc
     4141 ctttccgcca gttcggcagg ctttattgtt accgccgcgc aattgggcta tgcagcaggt
     4201 ctgctgtttc ttgttcccct cggtgatatg tttgaacgcc gccgcctgat tgtctcgatg
     4261 accttactgg cggcaggcgg catgttaatc actgccagca gtcagtcgct ggcgatgatg
     4321 atcctcggta cggcattaac cggtttattc tctgtcgtgg cacaaattct ggttccgctg
     4381 gcagcgacgc tggcttcacc ggacaaacgc ggcaaagtgg ttggcactat tatgagcggt
     4441 ctgctgttgg ggatcttact cgcacggacc gttgccggat tgctggcgaa tctcggcggc
     4501 tggcgcaccg tcttttgggt tgcctcggtg ttaatggcac tgatggcgct ggcattatgg
     4561 cgtggtctgc cacaaatgaa atcagaaacc cacctcaact acccacagtt gttaggttcc
     4621 gttttcagca tgtttatcag cgataagatc ctgcgcaccc gcgcattgct gggctgcctg
     4681 acctttgcca acttcagcat tctctggacc tcaatggcct ttttgcttgc cgctccacct
     4741 tttaactaca gcgatggtgt cattggtctg tttggacttg cgggagctgc cggagcgttg
     4801 ggcgctcgtc cggcgggcgg ttttgccgat aagggtaaat cgcaccacac cacaactttc
     4861 ggtctgctgc tgctattact ttcatggctg gcgatctggt ttggtcacac ttccgtactg
     4921 gcgctgatta tcggcatcct ggtgctggat ctcaccgtac agggcgtgca tatcactaac
     4981 cagacggtaa tttatcgaat acaccctgat gcgcgtaatc gcctgaccgc aggttacatg
     5041 accagctact ttattggcgg tgccgccggt tcgctaattt cagcctcagc ctggcaacat
     5101 ggcggttggg ctggcgtttg tctggctggc gcgacgattg ccctggttaa cttactggtc
     5161 tggtggcgag gttttcatcg tcaggaagcc gcaaattaag caatcagcaa ccgttttcgt
     5221 ggctttacac ttataagggt gttaagaagc ccatcagtct gataaggtta agatattcat
     5281 tcagtctatt tataatatta acaatcgtta agcgtacact ctatggaaag ccctactcca
     5341 cagcctgctc ttggttcggc gaccttcatg gaaggatgca aagacagttt accgattgtt
     5401 attagttata ttccggtggc ctttgcgttc ggtctgaatg cgacccgtct gggattctct
     5461 cctctcgaaa gcgttttttt ctcctgcatc atttatgcag gcgcgagcca gttcgtcatt
     5521 accgcgatgc tggcagccgg gagtagtttg tgggttgctg cactgaccgt catggcaatg
     5581 gatgttcgcc atgtgttgta tggcccgtca ctgcgtagcc gtattattca gcgtctgcaa
     5641 aaatcgaaaa ccgccctgtg ggcatttggc ctgacggatg aggtttttgc cgccgcaacc
     5701 gcaaaactgg tacgcaataa tcgccgctgg agcgagaact ggatgatcgg cattgccttc
     5761 agttcatggt catcgtgggt atttggtacg gtaatagggg cattctccgg cagcggcttg
     5821 ctgcaaggtt atcccgccgt tgaagctgca ttaggtttta tgcttccggc actctttatg
     5881 agtttcctgc tcgcctcttt ccagcgcaaa caatctcttt gcgttaccgc agcgttagtt
     5941 ggtgcccttg caggcgtaac gctattttct attcccgtcg ccattctggc aggcattgtc
     6001 tgtggctgcc tcactgcgtt aatccaggca ttctggcaag gagcgcccga tgagctatga
     6061 ggttctgctg cttgggttac tggttggcgt ggcgaattat tgcttccgct atttgccgct
     6121 gcgcctgcgt gtgggtaatg cccgcccaac caaacgtggc gcggtaggta ttttgctcga
     6181 caccattggc atcgcctcga tatgcgctct gctggttgtc tctaccgcac cagaagtgat
     6241 gcacgataca cgccgtttcg tgcccacgct ggtcggcttc gcggtactgg gtgccagttt
     6301 ctataaaaca cgcagcatta tcatcccaac actgcttagt gcgctggcct atgggctcgc
     6361 ctggaaagtg atggcgatta tataacccac aagaatcatt tttctaaaac aatacattta
     6421 ctttatttgt tactgtcgtt actatatcgg ctgaaattaa tgaggtcata cccaaatgga
     6481 tagttcgttt acgcccattg aacaaatgct aaaatttcgc gccagccgcc acgaagattt
     6541 tccttatcag gagatccttc tgactcgtct ttgcatgcac atgcaaagca agctgctgga
     6601 gaaccgcaat aaaatgctga aggctcaggg gattaacgag acgttgttta tggcgttgat
     6661 tacgctggag tctcaggaaa accacagtat tcagccttct gaattaagtt gtgctcttgg
     6721 atcatcccgt accaacgcga cgcgtattgc cgatgaactg gaaaaacgcg gttggatcga
     6781 acgtcgtgaa agcgataacg atcgccgctg cctgcatctg caattaacgg aaaaaggtca
     6841 cgagtttttg cgcgaggttt taccaccgca gcataactgc ctgcatcaac tctggtccgc
     6901 gctcagcaca acagaaaaag atcagctcga gcaaatcacc cgcaaattgc tctcccgtct
     6961 cgaccagatg gaacaagacg gtgtggttct cgaagcgatg agctaacgcg tcatctcgct
     7021 caaaaatcca gatttataaa agaaaaaatg accggccagc atcgcaacat gctggccttt
     7081 ttggcaagca ggtcggctca gccgatgagt taagaagatc gtggagaaca atatgagcgc
     7141 aaatgcggag actcaaaccc cgcagcaacc ggtaaagaag agcggcaaac gtaagcgtct
     7201 gctcctcctt ctcaccttgc tctttataat tattgccgta gcgataggga tttattggtt
     7261 tttggtactg cgtcatttcg aagaaaccga tgacgcatac gtggcaggga atcagattca
     7321 aattatgtct caggtgtctg gcagcgtgac gaaagtctgg gccgataaca ccgattttgt
     7381 aaaagaaggc gatgttctgg tcactctcga cccgacagat gctcgccagg cgtttgaaaa
     7441 agccaaaact gcactggctt ccagcgttcg ccaaacccac cagctgatga ttaacagcaa
     7501 acagttacag gcgaatattg aggtgcaaaa aatcgccctc gcgaaagcac aaagcgacta
     7561 caaccgccgt gtgccgctgg gcaatgccaa cctgattggt cgcgaagagc tgcaacacgc
     7621 ccgcgacgcc gtcaccagtg cccaggcgca actggacgtc gctattcaac aatacaatgc
     7681 caatcaggcg atgattctgg ggactaaact ggaagatcag cctgccgtgc aacaggctgc
     7741 caccgaagta cgtaacgcct ggctggcgct ggagcgtacc cgtattgtca gtccgatgac
     7801 cggttatgtc tcccgccgcg cggtacagcc tggggcgcaa attagcccaa cgacgccgct
     7861 gatggcggta gttccagcca ccaatatgtg ggtggatgcc aactttaaag agacgcagat
     7921 tgccaatatg cgtatcggtc agccggtcac tatcaccacg gatatttacg gcgatgatgt
     7981 gaaatacacc ggtaaagtgg ttggtctgga tatgggcaca ggtagcgcat tctcactgct
     8041 tccggcgcaa aatgcgaccg gtaactggat caaagtcgtt cagcgtctac ctgtgcgtat
     8101 cgaactggac cagaaacagc tggagcaata cccgctgcgc attggtttgt ccacgctggt
     8161 gagcgtcaat accactaacc gtgacggtca ggtactggca aataaagtac gttcaacacc
     8221 ggtcgcggta agtaccgcgc gtgaaatcag cctggcacct gtcaataaac tgatcgacga
     8281 tatcgtaaaa gctaacgctg gctaatccag aggtgcgtgt gatgcaacag caaaaaccgc
     8341 tggaaggcgc gcaactggtc attatgacga ttgcgctgtc actggcgaca ttcatgcagg
     8401 tgctggactc caccattgct aacgtggcga tccccactat cgccgggaat ctgggctcat
     8461 cgctcagcca gggaacgtgg gtaatcactt ctttcggggt ggcgaatgcc atctcgatcc
     8521 cgcttaccgg ctggctggca aagcgcgtcg gggaagtgaa actgttcctt tggtccacca
     8581 tcgcctttgc tattgcgtcg tgggagtgtg gtgtctccag cagcctgaat atgctgatct
     8641 tcttccgtgt gattcagggg attgtcgctg ggccgttgat cccactttcg caaagtcttt
     8701 tgctgaataa ttacccgcca gccaaacgct caatcgcgct ggcgttgtgg tcgatgacgg
     8761 tgattgtcgc gccaatttgc ggcccaatcc tcggcggtta tatcagcgat aattaccact
     8821 ggggctggat attcttcatc aacgtgccaa ttggcgtggc ggtggtgttg atgacactgc
     8881 aaaccctgcg cggacgcgaa acccgcaccg aacggcggcg gattgatgcc gtggggctgg
     8941 cactgctggt tattggtatc ggtagcctgc agattatgct cgaccgcggt aaagagctgg
     9001 actggttttc atcacaggaa attatcattc ttaccgtggt ggcggtggtg gctatctgct
     9061 tcctgattgt ctgggagctg accgacgata acccgatagt cgatctgtcg ttgtttaagt
     9121 cgcgcaactt caccatcggc tgcttgtgta tcagcctcgc gtatatgctc tacttcggcg
     9181 cgattgttct gctgccgcag ttgttgcagg aggtctacgg ttacacggcg acctgggcag
     9241 gtttggcctc tgcgccggta gggattattc cggtgatcct gtcgccgatt atcggccgct
     9301 tcgcgcataa actggatatg cggcggctgg taaccttcag ctttattatg tatgccgtct
     9361 gcttctactg gcgtgcctat acctttgaac caggtatgga ttttggcgcg tcggcctggc
     9421 cgcagtttat ccaggggttt gcggtggcct gcttctttat gccgctgacc accattacgc
     9481 tgtctggttt gccaccggaa cgactggcgg cggcatcgag cctctctaac tttacgcgaa
     9541 cgctggcggg gtctatcggc acgtcgataa ccacgaccat gtggaccaac cgcgagtcga
     9601 tgcaccatgc gcagttgact gagtcggtaa acccgttcaa cccgaatgcc caggcgatgt
     9661 acagtcaact ggaagggctt gggatgacgc aacagcaggc atcaggctgg attgcccagc
     9721 agatcactaa tcaggggctg attatttccg ccaatgagat cttctggatg tcagccggga
     9781 tattcctcgt cctgctgggg ctggtgtggt ttgctaaacc gccctttggc gcaggtggcg
     9841 gcggaggtgg tgcgcactaa gtacaactaa gccagttcat ttgaactggc ttttttcaat
     9901 taattgtgaa gatagtttac tgactaaatg tgcagttcct gcaacttctc tttcggcagt
     9961 gccagttctt cgttgctgtt gatgcgtacg tcacgttcca gaatgctacg cgcaatatcc
    10021 tgcgcttcct gcaacgagtg catctggtaa gtgccacact ggtagacgtt cagctccggg
    10081 atctgattct gatcctgcac tttcagcacg tcttccattg ccgctttcca ggcatcagca
    10141 acacgctgct catctggcgt accaatcaga ctcatataaa aaccggtgcg gcagcccatt
    10201 ggcgagatat cgataatctc tacaccatta ccgttaagat ggttacgcat aaaaccagca
    10261 aacaggtgct ccagagtatg gctccctctt tctggcatca cttctttgtt cggcacgcag
    10321 aagcgcagat cgaacacggt gattgcgtcg ccatgcgggg tgttcattgt tttcgccacc
    10381 cgaactgcag gcgcttccat ccgggtatga tcgactgtga agctatctaa caacggcatt
    10441 tagccacctc cggtaatttt tttaaaaatt ttctgaactc tttcttccca ggcgagtctg
    10501 agtatatgaa agacgcgcat ttgttatcat catccctgaa ttcagagatg aaattttggc
    10561 cactcacgag tggccttttt cttttctgtc aggcgtgttt ttccagccac accgcaaacg
    10621 gttcggtatc agcggtttcc atttcctgct gacggcgttc agatgcctcg cgctcggcta
    10681 caaaatcctc ttcgcgcaga atttccaacg gctcttcacg cagcagatta cggtaggctt
    10741 ctgcaaacgc tttgcctgtt ccgccaatac cagtatcaat catagacctt aagatacggg
    10801 cagagaaagt cagatcggga ttatcgaagc aggcgaccag ttcatcacac actttctgat
    10861 acgctttgcc gccgttaatg ctatccaacg tttgcgcgac gcgtttcaga tcgcggaaca
    10921 gatctttacc cacctgcggt aacgggaact gcgcggtttc gcagccgata cccagcgtca
    10981 ggcccggttt gcgaccttcg aggatcaccc ggttccagtt aacgcgtgta caggcaagtt
    11041 cgctactgct catttccggt gcatcagcca gcgcacacca gaccataaac aggtcgagga
    11101 atcgcacctg ctgttcatct acaccaatcg gcgagaacgg gttgatgtcc agcgaacgca
    11161 cttcaatata ttcaatgccg ccacgtaaca gcgcatcaga aggtgactcg ccgctgcggg
    11221 taacgcgttt tggacgaatc ggcgcataca gttcgttttc aatctgcagc acgttgctat
    11281 tgatttgcag cctcttaccg tctttctcaa taccaatctt cgcgtactct tccgatggcg
    11341 ttttgattgc ctgtttaagg cccgctacgt actcgtaaag atcgttgaag gtaataccaa
    11401 gattgctttg cgatttattg gtatagccga gatcgctcaa acgaagagag gtcgcatacg
    11461 gcaggtaata cataccgcac tcggttttct caaacggcag cgacgttggt tttccttgca
    11521 ggaaagaaga acaaatcgcc ggagatgcac caaacagata aggaatgacc caaccgaaac
    11581 gatagtaatt gcggataacg cggaaatagc ccgcagaaat tttctctttg gcatcagtgc
    11641 ccgagatatc acagcacttc gcttgccaga atgccattgg caaagagaaa ttgtagtgca
    11701 cgccggaaat ggtttgcatc agcgcgccgt agcgattttt cagcccttca cgatacagcg
    11761 ttttaaagcg tccggtgtta gaagtgccgt actgtgccag ttcgatgtcc tgaccttctg
    11821 cgatgtagca tggcatactt aacggccaca tccgctcatc gcccatattg cgcgccgtat
    11881 aacgatgcag atcgcgcata aaggtcaaca tatgttcaat atcaccatcc actggtgtaa
    11941 tgaattccag caatgcttcc gcaaaatcgg tagtaatcca tttgtgcgtc agtgcggaac
    12001 ctaatgcttc aggatgacct gttgttgcct gtgtgccatc agcattaaca cgcaaagttt
    12061 cgcgctccag cccacgctgt atccccttta acgcctgagg atgtttttcc agccaggcca
    12121 gcgcctgtga tacgtccggg atcaaattga cctcccgcct gtcaaaatcg ttttaattag
    12181 cataactgta atggtgacca tatgtgcagg cctacaatta gtgccaccac atcatgccct
    12241 gaacggtagc tgctgcaact gcaacatagc gtaaagcttt accaaggcac aaaaaaaaga
    12301 ttaccggtcc ccacgagatg cgcatccatc ccgctaacag acacagtaaa tcgccaacca
    12361 cgggcatcca gcttaataat agcgtgactg caccatagcg tttcagccag ccagtagctt
    12421 tctcttgcca gcgcgatgtt ttacgcaatg gaaagaaacg cccaaggata acgttagtta
    12481 accctccaag gctattaccc attgttgctg ttaaaactaa aacccaggga taactgatcc
    12541 cggaaagcaa cattgccacc agcacgactt cggagttgcc gggtaatagt gtagcgctga
    12601 gaaaactact ggcaaacaac gagaaaagcg ataacgcttc actcacagca agcgaacatc
    12661 cacggcgtcc atgcctgctg cacgggccgc ctgaataccg aaatcggcat cttcaaagac
    12721 cacacactgc gtcggttgca cgcccatacg ctgcgcgcac aacaaaaatg tgtctggcgc
    12781 gggtttatgg tgtttgacgt gatcagcagc gacgacggcg tcaaaataac ggcgtaatcc
    12841 caggtgcgcc agcaatgcct cagcgatggc gctttcactc cccgttccta cagccattgg
    12901 gcgacgacca tgccaacttt tcaccacttc aacaagagga agcggctcga cactatccag
    12961 cagcatactt cttactgctt ctgttttttc acgcgctaac gcatgcgggg cgagatcggc
    13021 ctgattcagc tcaataattg cctgagcaat acgccaggtg ggcgatccat taagcgcaat
    13081 cattgcctga acatcgtact gaagaccgta gtgccctaat acttcgcgcc acgctttacg
    13141 gtgcgtaggc tccgtatcca ggaatatcaa aaattaaacc tgcataacgc tcgtacatgg
    13201 tcttctcgca agtcgaaaaa tatgacgcta ctttagcgta attgcttgat tttgtcgctg
    13261 atggcgaagg agaagaaaat tcaggaaatg gataaagtag ttatttagaa atgagatatt
    13321 tttgaaggaa atttttggga gaagatggtg catccgggag gattcgaacc tccgaccgct
    13381 cggttcgtag ccgagtactc tatccagctg agctacggat gcatcgggaa aatttatttt
    13441 actgctgata ttgatatcgc tactaaagcc atatcaagta agagatggtg catccgggag
    13501 gattactcgc cttgcggctc gcccttcggg ccgttgctaa agcaacgtta tcatccctgg
    13561 tgcctgcggt taattccgct acctcttcga taccttcatt gctgaagatt tcggagaata
    13621 tggtgcatcc gggaggattc gaacctccga ccgctcggtt cgtagccgag tactctatcc
    13681 agctgagcta cggatgcatc gggaaactta ctttactgca gattttttga taccgctact
    13741 aaagccgtat caagtaagag atggtgcatt cgggaggatt actcgccttg cggctcgccc
    13801 ttctggccgt tgctaaagca acgttatcct ccctggtgcc tgcggttata ccgccacctc
    13861 ttccatacct tcatcgctga aagtacgtag aatatggtgc atccgggagg attcgaacct
    13921 ccgaccgctc ggttcgtagc cgagtactct atccagctga gctacggatg caaatggcgg
    13981 tgaggcgggg attcgaaccc cggatgcagc ttttgaccgc atactccctt agcaggggag
    14041 cgccttcagc ctctcggcca cctcaccaca cgcctcttac gagtgcttcg aagaacttgt
    14101 ttatcgctca tcgtcgctgc gtggcgcaca tattactttc tgagacttat aagtcaaaca
    14161 atttttccca cacttttatc gtttgcacac ttcacgctca attagtctgt aaaaacgtca
    14221 aaaagagtgt tttatctaca gaaaaacgga ggtctggcag atagcagtaa tgcaaaaaaa
    14281 tggagactta agttgaatga acgggagtaa agcgaaaaga ctatagagtg aaggagaaat
    14341 tttgagggtg cgtctcaccg ataaagatga gacgcggaaa gattagtaac tggactgctg
    14401 ggatttttca gcctggatac gctggtagat ctcttcacgg tgaacagaaa cttccttcgg
    14461 ggcatttacg ccaatacgta cctggttgcc cttcacccct aaaactgtca cggtgacctc
    14521 atccccaatc atgagggtct caccaactcg acgagtcaga atcagcattc tttgctcctt
    14581 gaaagattaa aagagtcggg tctctctgta tcccggcatt atccatcata taacgccaaa
    14641 aagtaagcaa tgacaaacac attacatgta agcagtcatg gcattacatt ctgttaaacc
    14701 taagtttagc cgatatacac aacttcaacc tgactttatc gttgtcgata gcgttaatgc
    14761 gaatgccgtg aagcgagtcc acggcattgc ctgacgctta tattattgca atttcgcgct
    14821 gacccagcct ttcacactgg ctaacgctgc aggtaaggcc gcagcatccg taccaccggc
    14881 ttgcgccatg tcaggacgtc caccaccctt gccgcccacc tgctgagcga ccataccaat
    14941 cagttcccct gctttcacac gatctgtgac gtccttagat acgcctgcaa tcagagaaac
    15001 cttaccttcg gctaccgttg ccagcacgat aattgtcgac cccagctgat tttttaaatc
    15061 gtcaaccatg gtacgcaaca ttttcggctc aacaccgcta agctcgctaa ccaacagctt
    15121 aacaccatta acatcaattg ccttactgga aatatttgcg ctctcctgtg cggcagcttg
    15181 ttctttaagc tgttgtagtt ctttttctaa ctgacgcgta cgttccagta ctgagcgcac
    15241 tttatccgcc agattattgc tatcgccttt cagcagatgc gcgacttcgc ttaagcgatc
    15301 gctgtctgca tgaacggtgg tgatagcgcc ttctccggtt accgcttcga tacgacgaac
    15361 gcctgcagca gtacccgatt cagagatgat gcggaacaga ccaatatcac cagtgcggct
    15421 ggcgtgagta ccgccacaca gctcggtgga gaaatcgccc atgctcagca cgcgtacacg
    15481 ctcatcatac ttctcgccga acagcgccat cgcacctttc gctttcgccg cttcgagatc
    15541 catgatgttg gtttcgatcg gcaaattgcg acgaatctgt gcgttcacca ggtcttcgac
    15601 cgcacgaatc tcttccggtt tcatcgcttc gttgtgtgag aagtcgaagc gcagcacctt
    15661 gtcgttaacc agtgaacctt tctgcgatac atgagtcccc agaacctggc gcagcgcagc
    15721 gtgcatcagg tgcgttgcgg agtgattcag acgaatacgg gcgcgacgag cctcatcaac
    15781 atcagcctgc acagcgtcgc ccactttcag agaacccgca gcaagtttac cgatgtgacc
    15841 aatcgcctgg ccgtatttct gcgtatcttc caccgcgaag gagaagttag cgtctttcag
    15901 ttcgccttta tcaccaacct gaccgccgga ttccgcatag aatggtgttt gatctagcac
    15961 gaccacagct tcctggcctg cattgatggc atcaaccgct ttaccatcaa caaacagcgc
    16021 ggtcactttg ccgttcagtt ccagatggtc atagccttta aattcagatg cactatcaac
    16081 acggatcatt gcgttgtaat cggcaccaaa gccgctggct tcgcgcgcgc gacgacgctg
    16141 ctcttccatt gctgcttcaa aaccagcttc gtcaactttg atgttgcgct cacgacaaac
    16201 atcagccgtc aggtcaaccg ggaagccata ggtgtcgtac agacggaaag ccgtttcacc
    16261 atccagcgta tcaccagaaa gttttgccag ctcttcatcc agcaacgcca gaccgcgctc
    16321 cagagtacgg gcaaactgct cttcttcagt cttcagcacc tgctcaacct gcgcctgctg
    16381 gcgtttcagg tcttcacccg cagagcccat aacgtcgatc agcggaccaa ccagtttgta
    16441 gaagaaggtt tctttcgcgc cgagcatatt gccgtgacgc actgcgcgac gaatgatacg
    16501 acgcagtaca taaccacggt tttcattgga cggcattacg ccatccgcga tcaggaacgc
    16561 acaagaacga atgtggtcag cgattacgcg cagcgattta ttgctcagat cggtcgcgcc
    16621 agtgactttc gctaccgcct ggatcaacgt gcggaacagg tcgatgtcat agttagagtt
    16681 aacgtgttgc agcaccgcag caatacgctc cagacccata ccggtatcta cagacggctt
    16741 cggcagcggt tccatcgtgc catctgcctg gcggttgaac tgcatgaaga cgatgttcca
    16801 gatctcaatg tagcggtcgc cgtcttcttc cggacttccc ggagggccac cccaaatgtg
    16861 gtcgccgtga tcgtagaaga tttcggtgca cgggccgcac ggaccagtgt cacccatctg
    16921 ccagaagttg tcagatgcgt atggcgcacc tttgttatcg ccgatgcgaa taatacgttc
    16981 gcgcgggatc ccgacttctt tttcccagat ttcgtaggct tcgtcgtcgc tttcatagac
    17041 ggtaacccac agacgctctt tcggcagggc aaaccatttt tcgctggtca gcagttccca
    17101 tgcaaactga atggcatcgt gtttgaaata gtcgccgaag ctgaagttgc ccagcatttc
    17161 gaagaaggta tggtgacgcg cggtgtaacc gacgttttcc aggtcgttgt gtttaccacc
    17221 cgcacgcacg cagcgttggg aagtggtagc gcgggaataa ttacgcttgt cgagcccaag
    17281 gaacacatcc ttgaactgat tcatcccggc gttggtaaac aacaaagttg ggtcgttatg
    17341 gggtaccagg gagctgctgg caactacctg atgtccctta ctatggaaaa agtcgagaaa
    17401 cgcctgacgg atctcagcgg tgctcttgct cataattatc ctgaaatcaa gctaacgaaa
    17461 tatcgccacc agctccagcg tgtcttaacc gccgggctgg taactgaaaa gtgggaataa
    17521 gataagtttt cttgactggg aagtaaaata ccgtatgcgt tcagtcggca aaatttcgcc
    17581 aaatatcctg gatatcttcc atcagatagc cacgatagag cagaaaacgc tggatcttaa
    17641 ctttttctga aaagacagtt ggcaaaggtt catcatattt tcgcgtcgcc tgatcgcgcg
    17701 ccagtgcgca ccagtcgatg tcacattcac gcatcgcttt ttctgtcgct tcgcgggaaa
    17761 tacctttctg attcagttcc tgacgaatac gtgcaggtcc ataacctttg cggctacggc
    17821 tggcgataaa gcgcgcaaca aatcggctgt catcgagata gccatgttca tggcaccatg
    17881 caataacgcg ctcgtaatct tctgccgtag catcaatctc ttctgggcca tttttgccca
    17941 taatcggtgc cgcgagttta cgtcgcagtt cttgctcact gtgatcgcgc accgccagaa
    18001 tgcgtaccgc acgatccaac aggcgagcat atgccgggcg acgggacgtt gattctgtca
    18061 tggcatatcc ttacaactta aaaaagcaaa agggccgcag atgcgaccca ggttttgctg
    18121 ataaacagat ttaatagtca atgagtgtgc agaatgttcc cgcaggccca attcgttaga
    18181 ggatcgaggt gagagtaatt tttcacgcca gtgctggcct gttcccctca ccctaaccct
    18241 ctccccaaag gggcgagggg accgtccgtg cacacattat ctattatcat caataacgaa
    18301 cgattaaaaa tcttcgttag tttctgctac gccttcgctg tcatctacag agaaatccgg
    18361 cgttgagttc gggttgctca gcagcaactc acgtactttc ttctcgatct ctttcgcggt
    18421 ttccgggtta tctttcagcc aggcagttgc attcgcttta ccctgaccga tcttctcacc
    18481 tttgtagctg taccacgcgc ctgctttctc gatcagcttc tcttttacgc ccaggtcaac
    18541 cagttcgccg tagaagttga taccttcgcc gtagaggatc tgaaattcag cctgtttaaa
    18601 cggtgcagcg attttgttct tcaccacttt cacgcgggtt tcgctaccca ccacgttttc
    18661 gccctctttc accgcgccga tacgacggat gtcgagacga acagaggcgt agaatttcag
    18721 cgcgttacca ccggtagtgg tttccgggtt accgaacatc acaccaattt tcatacggat
    18781 ctggttgatg aagatcagca gcgtgttgga ctgcttcagg ttacccgcca gcttacgcat
    18841 cgcctggctc atcatacgtg ccgcaaggcc catgtgagag tcgccgattt cgccttcgat
    18901 ttccgctttc ggcgtcagtg ccgccacgga gtcaacgacg ataacgtcta ctgcaccaga
    18961 acgcgccagg gcgtcacaga tttccagtgc ctgctcgccg gtgtccggct gggagcacag
    19021 caggttgtcg atatcgacgc ccagtttacg tgcgtagatt gggtccagcg cgtgttcagc
    19081 atcgataaac gcacaggttt taccttcacg ctgcgctgcg gcgatcacct gcagcgtcag
    19141 cgtggtttta ccggaagatt ccggtccgta gatttcgacg atacggccca tcggcagacc
    19201 acctgcccca agcgcgatat ccagtgaaag cgaaccggta gagatggttt ccacatccat
    19261 ggaacggtct tcacccaggc gcatgatgga gcctttacca aattgtttct caatctggcc
    19321 cagtgctgcc gccaacgctt tctgtttgtt ttcgtcgata gccattttta ctcctgtcat
    19381 gccgggtaat accggatagt caatatgttc tgttgaagta attatactgt atgttcatac
    19441 agtatcaagt gttttgtaga aattgttgcc acaaggtctg caatgcatac gcagtagcct
    19501 gacgacgcac cgcatcacgg tcgccgctga agcattcccg ccgggtaatg ccttcaccgc
    19561 gggcagtggc aaaagcaaac cagacggtgc cgacaggctt ctcttcactg ccgccatccg
    19621 gcccggcgat accactaata gacacggcat aatcagcacg agccgctttc agtgcgccta
    19681 tcaccatttc caccacgacg ggttcactca ccgcgccatg ctgcgccagc gtctcttcgc
    19741 gtacgccgat catctgcgct ttggcttcgt tactgtaggt gacaaatccg cgttcaaacc
    19801 aggcggagct accggcaata tcggtaatca ctttcgctac ccaaccaccg gtacaagact
    19861 cggcagttgt tacggttgcg ccacgggctt tcagcgcctg cccaacctgt tcacttaact
    19921 gcatcagttc actgtcagtc atcacaacct ctgtcagtca aaaatttatg ccggacaaga
    19981 tagcactttc gtcaggaaga tggtgttggc gttgcaattt tacgaggagg attcagaaaa
    20041 aagctgatta gccagaggga agctcacgcc cccctcttgc aaatagttac tgcacgcgcg
    20101 ccagcgccac ggcttgtcct aactgccaga ccgccattgc gtaatgggtg ctgtggttat
    20161 aacgggtaat ggtgtagaag ttcggcagac cgtaccagta ctggtaaccg gtaccgacat
    20221 ccagacgcag caggctggct tgttgatggt tgcccagcgg ctgctgtggc gttaaacctg
    20281 ccgtggcaag ctgcgaaatg ctgtacctgg ttttgaagcc atttggcaag cctggagcct
    20341 gaccgtttgc cattaccgcg acctgatcgc ctttcaccca gccgtgcgct ttgaaatagt
    20401 tcgccacgct accgatcgca tcaaccggat cccacaggtt gatatgcccg tcgccgctga
    20461 aatctaccgc atattgtttg taagacgacg gcataaactg tccgtagccc atcgccccgg
    20521 caaaggaacc tttcagattg agcggatcgt cctgctcgtc gcgcgccatc agcaggaagg
    20581 tttccagctc gccagagaaa tactccgcgc ggcgtgggta gttaaatgac agcgttgcca
    20641 gcgcatcgag gatgcgagtt ttccccatca cgcgccccca gcgggtttca acgccgataa
    20701 tcccgacgat aatttccggc ggtacgccat acacctgcca cgcgcgattc aacgcatctt
    20761 catactgatt ccagaaaacc acaccgttct gcacgttgtc cggcgtaata aattttttgc
    20821 gataacgcag ccatgcgccg ttcggacctg atggcggttt caccgatgtg gttggtgcct
    20881 ggttatccat cagccgcagt accgaatcca gacgcttcgc ctgggagaga atttcctgca
    20941 actgctgacg atcgaaaccg tgtttgttca ccattttgtc gatgaactgc tgggcattcg
    21001 ggttattagc gaaatcgccg cccatctgca tcacattgtg ctgcggctca agcaggaagc
    21061 cgccagacgg cgttccggtg gtcgtttcag tctcagtagg ttttggcttg ctgctacagg
    21121 cggcaagcaa cacaaaaagg ggaagcaatg ttacataacg acgcttgaac atgagggggc
    21181 catttaacag attcaaccag gggcaagtat ggtaaagcat cacgccccgc acaaggaagc
    21241 ggtagtcact gcccgatacg gactttacat aactcaactc attcccctcg ctatcctttt
    21301 actcaaactt ccaaattaaa atatttatct ttcattttta gattaaaata acacttttaa
    21361 atctttcaat ctgattagat taggttgccg tttggtaata aaacaataaa tcctgaagga
    21421 gagaacaatg atagaaacca ttactcatgg tgcagagtgg tttatcgggc tgttccaaaa
    21481 gggcggagag gtgtttaccg ggatggtgac cggcattctt ccgctgttga ttagcctgct
    21541 ggttatcatg aacgcactga ttaattttat cggtcagcat cgtattgaac gttttgctca
    21601 acgttgcgcc ggtaaccctg tttcccgtta cctgctgcta ccgtgcattg gcacgtttgt
    21661 cttttgcaat ccgatgacct taagccaggg tcgctttatg ccggaaaagt acaaacccag
    21721 ctactacgcg gcggcctctt atagctgcca ctcaatgaat ggcctctttc cccatatcaa
    21781 ccctggcgaa ctgtttgttt atcttggcat tgccagcggt ctgacaacgc tgaacctgcc
    21841 acttggccca ctggcggtga gctatctgct ggttggtctg gtcaccaact tctttcgcgg
    21901 ctgggtgacc gatctgacca ccgccatttt tgagaaaaag atgggcattc aacttgaaca
    21961 aaaagttcac ctggcaggag caacatcatg acgcgtattc ggatcgaaaa aggaacgggt
    22021 ggctggggcg gcccgcttga gctggaagcc acgccgggca aaaaaatcgt ctatatcacc
    22081 gccggtaccc ggcctgcgat tgttgacaaa ctggcacaac ttactggctg gcaggctatt
    22141 gacggattta aagaaggtga acccgcggag gcggaaattg gtgtcgcggt aatcgactgt
    22201 ggcggcacat tacgctgcgg catctatccg aaacgacgta ttcccaccat taatatccac
    22261 tcgacgggca agtccggtcc gctggcgcag tacattgtgg aagatattta tgtctctggc
    22321 gtaaaagaag aaaacatcac tgtagtgggt gatgcgacac cacaaccctc ttccgtgggc
    22381 cgtgactatg acaccagtaa gaaaatcacc gaacaaagcg atggtttact ggcgaaggtg
    22441 ggaatgggca tgggcatggg gtccgccgtt gcggtgctgt ttcaatctgg tcgtgacacc
    22501 atcgacactg tattaaaaac cattctgccg tttatggcat tcgtctcggc gctcattggc
    22561 atcattatgg cttctggcct tggtgactgg attgcccacg gtcttgctcc gctggcgagc
    22621 catccactgg gtctggtcat gctggcgctc atctgctcct tcccactgct ttcacctttc
    22681 ctcggcccag gcgcagttat cgcacaggtt atcggcgtat tgattggcgt gcagattggt
    22741 ctcggcaata ttccgccgca tctggcttta ccggcactgt ttgccatcaa cgcgcaggcg
    22801 gcctgcgact tcatcccggt cggtttgtcg ctggcggaag cccgtcagga cacggttcgc
    22861 gtcggtgtcc cttctgtact ggtgagccgc tttttaaccg gcgcaccgac tgtactgatc
    22921 gcctggtttg tctccggttt tatctatcaa tagaggctga aacatgaccg ttatttataa
    22981 gaccaccatc acccgtatcg gcgcgagtgc cactgacgcc ctcagcgacc agatgctcat
    23041 cacctttcgt gaaggcgcgc cagcggacct cgaagagtat tgcttcattc attgccacgg
    23101 cgagttgaaa ggtgcactcc atcccggttt gcaatttacg ctcgggcagc atcgctatcc
    23161 ggtgaccgct gttggcagcg tggcggaaga caaccttcgc gaactgggtc atgtcaccct
    23221 gcgcttcgat ggtttaaacg aagcggaatt tccgggcact gtccatgtgg caggccctgt
    23281 acccgacgat atcgcgccgg gatcggtttt gaagtttgaa tctgttaagg agtaaaaaat
    23341 gaatcaggtt gccgttgtca tcggtggtgg gcaaacctta ggcgcgttcc tgtgccacgg
    23401 tctggttgcc gaggggtatc gcgtcgcggt tgtcgatatt cagagcgaca aagccgcaaa
    23461 tgtggcacaa gaaattaacg ccgaatatgg tgaaagtatg gcgtacggtt ttggtgctga
    23521 cgccactagc gagcaaagcg ttctggcgct ctctcgtggg gtagatgaaa tctttggtcg
    23581 cgtggatttg ctggtctata gcgccggaat agcaaaagca gcctttatca gcgacttcca
    23641 gctcggcgat tttgaccgtt cgctacaagt gaatctggtg ggttatttcc tgtgtgcccg
    23701 tgaattttcg cgtttgatga tccgcgacgg gattcagggt cgcattattc agatcaactc
    23761 gaaatccggc aaagtgggca gcaaacacaa ctctggctac agcgcagcga aatttggtgg
    23821 cgtcgggctg actcaatcac tggcgctgga tctggtggag tacggcatta cggtgcattc
    23881 actgatgctc ggtaacctgc tgaaatcgcc gatgttccag tcactgttgc cacaatacgc
    23941 gaccaagctg ggtatcaaac cggatcaagt cgagcagtat tacattgaca aagtaccgct
    24001 caaacgcggc tgcgattatc aagatgtgct gaatatgctg ctgttctacg ccagtcctaa
    24061 ggcgtcgtac tgcaccggac agtcgatcaa tgtcaccggc ggtcaggtga tgttctgatc
    24121 aacagcggag atccattaag gatctccgtg agactataga atgcctgatg cgctacgctc
    24181 atcaggcata caggacttcc gccactacat taaggaaaag ttatggtatc cgcactcatc
    24241 accgtcgccg ttatcgcctg gtgtgcgcaa ctggccttag gcggctggca aatttctcgt
    24301 tttaaccgtg ccttcgacac actatgccag caagggcggg ttggcgtggg tcgttccagc
    24361 gggcgcttta aaccgcgggt cgtggtcgcc atcggctgga cgatcagcag cgcatcgtcg
    24421 acaccttgtt tatgaaagga ctgaccgtct tcgcccgacc gcaaaaaatt cccgcaatta
    24481 ccggtatgca tgcgggtgat ttacagcccg atgtgatctt tccccatgat ccactatcac
    24541 agaatgctct atcattggcg cttaaactga aacgtggata atttcgttgt gaatgttact
    24601 tgcttgcgaa gttatcattt tgaaacctaa atcaggtaat cacgcccatg aaacctcgtc
    24661 agcgtcaggc cgccattctg gagtatctgc aaaagcaggg taaatgctcg gttgaagaat
    24721 tggcgcaata ctttgacacc acaggcacaa ccattcgcaa agatctggtc attctggaac
    24781 atgccggaac cgtcattcgt acttatggcg gagtggtgtt gaataaagag gaatccgatc
    24841 cgcctatcga tcataaaaca ctcatcaaca cccacaagaa agagctgatt gcagaagctg
    24901 ccgttagttt tatccatgat ggcgattcga tcattcttga tgctggcagt accgttttgc
    24961 agatggttcc cctgctctcg cgctttaata acatcacggt gatgaccaac agcctgcata
    25021 tcgtcaatgc gctatccgaa ctggataacg aacaaactat cctgatgcca ggcggaacgt
    25081 ttcgtaaaaa atcggcctca tttcacggac agctggcaga gaatgccttc gaacatttca
    25141 gtttcgataa attgtttatg ggcaccgacg gcatcgatct caatgcgggc gtaaccacct
    25201 tcaacgaggt ttataccgtc agtaaggcaa tgtgcaatgc cgcgcgcgaa gtgattttga
    25261 tggcggactc atcaaagttt ggccgtaaaa gccccaacgt agtttgcagt cttgaaagcg
    25321 tcgataagct gattaccgac gcaggtatcg atccggcgtt tcgtcaggcg ctggaagaga
    25381 aagggatcga tgtgatcata accggagaga gcaatgagtg aagcactact gaacgcggga
    25441 cgtcagacgt taatgctgga gttgcaggaa gcaagccgtt taccggaacg tctgggcgat
    25501 gattttgttc gcgccgccaa tatcatcctg cactgcgaag gcaaagtggt ggtttcggga
    25561 attggcaaat cgggccacat tggtaagaaa atcgccgcaa cacttgccag taccggcaca
    25621 ccggcttttt ttgtccatcc ggcagaagca ctgcacggcg atctggggat gattgaaagc
    25681 cgcgatgtga tgctgtttat ctcttactcc ggtggcgcga aggaactgga tctgattatt
    25741 ccgcgtctgg aagataaatc tatcgcgctg ctggcgatga ccggcaaacc gacgtcaccg
    25801 ctgggcctgg cggcaaaagc ggtgctggat atctccgtag aacgcgaagc ctgcccgatg
    25861 caccttgcgc cgacctccag caccgtcaat accctgatga tgggtgacgc gctggcgatg
    25921 gcggtcatgc aggcgcgcgg atttaatgaa gaagattttg cccgctccca cccagccggg
    25981 gcactgggcg ctcgcttgct gaataaagtg catcatctga tgcgccgtga cgatgccatc
    26041 ccacaggtgg cgttaaccgc cagcgtgatg gatgcgatgc tggaactcag ccgcaccggt
    26101 ctggggctgg tggcggtatg tgacgctcaa caacaggtac aaggcgtctt taccgacggc
    26161 gatttacgtc gctggctggt aggcggcggc gcactcacca cgccagttaa tgaagcgatg
    26221 acgacaggcg gcaccacgtt acaggcgcaa agtcgcgcca tcgacgccaa agagatcctg
    26281 atgaagcgca aaatcactgc cgcaccggtg gtggatgaaa acggcaaact caccggcgca
    26341 attaacctgc aggatttcta tcaggccggg attatttaat ccttcattcc cagacgtttc
    26401 gccagccgat gcaggttggc gacgtcggtt tccagcatcc gcgcgcaggc agcccagtta
    26461 tgatgatttt gtgccagtgc ctggcgaata gtttcacgct ggaacgcttc tgtcgcttca
    26521 cgcaggtttt gcttaacaac gggcaccgcc gccgcttctg gcggcggcaa cgtcacctca
    26581 ggaaaagcaa aatgttgcgc ctcaagaatc acttcatcgc cgttgcgggt ggctctcgcc
    26641 agcactaccg cccgatgaat agcatgttcc agttcgcgca cgttccccgg aaaacgatag
    26701 tgttgcagta aatttcgcgc tccggcactt aataccacgc gggagagccc cagccgcaaa
    26761 cgacactgtt cgcagaaata ccccgccagc agaatgacat catcgccccg ctcacgcagc
    26821 ggcggcaccg aaagtggaaa cacgctcagg cgatgaaaca agtcagcgcg aaatcgccct
    26881 gccagcacct cttcgcgtaa gtcgcggtta gtcgccgcca gcacgcgcac atcgacccgc
    26941 aaactacggt catcgccaac gcgctgaata tcgccatact gcaacaccct cagcagcttg
    27001 gcctgcaatg ccaacgacaa ctcgccgatc tcatccagaa acagagtgcc gttatccgcc
    27061 atttcaaact tcccgctgcg gttactgata gcgccagtaa acgctccttt cacatgcccg
    27121 aacaactcac tttccgccac actttccggc agtgcagcac agttgagata gaccagcgga
    27181 ttcaccgccc gtggcgaggc ttcatgaatc gctttcgcca ccagctcctt accggttccc
    27241 gtctcaccgc tgatcaggac gttgagatcg gacgccgcca caatctcaat ctcttttttc
    27301 agttgcgtca tgccagggga caagccaatc atctgcgtct gtttcaccgc ttcaaacggc
    27361 gtggcatcgc ctggcatcat attctggctt tccagttgtt caatcagcaa cgcattgctt
    27421 aacgctcccg ccgccagcgc agcaatcagc cgtagctctt cgtcgctgaa aacatcgaac
    27481 tgatcgggct gcatcccgtc gagcgtcagt gcgccgatca ggttttgccc ggcaaacaat
    27541 ggcagaccaa cgcaggcgtg aaccttcaga ctctcctgcc caggaatcaa accgtcatag
    27601 ggatcgggca attcgctgtc tgcgggaaag cgcaccacat ccccggcgcg ggcaatcgct
    27661 tccagccgtg gatgcccttc cagcgcaaag cgtctaccga gtacaccctt tgccagaccg
    27721 tcgatggcaa gcggaataaa ctgccgcgaa tcgtaacgta gcaacgcaga cgcatcgcac
    27781 tccagcacct gacgtagcgt ggtgatcagg cgctgaaaac gatcctgatg accaatccca
    27841 cgctgcaatt cgatggcgat attcgccagc acatcaacgg aaaaactcat ctttgcctca
    27901 ctgtcaattt gactatagat attgtcatat cgaccatttg attgatagtc attttgacta
    27961 ctcattaatg agcataattt tatttataga gtaaaaacaa tcagataaaa aactggcacg
    28021 taatctgcaa ttagcaagac atctttttag aacacgctga ataaattgag gttgctatgt
    28081 ctattgtggt gaaaaataac attcattggg ttggtcaacg tgactgggaa gtgcgtgatt
    28141 ttcacggtac ggaatataaa acgctgcgcg gcagcagtta caacagctac ctcatccgcg
    28201 aagaaaaaaa cgtgctgatc gacaccgtcg accataaatt cagccgcgaa tttgtgcaga
    28261 acctgcgtaa tgaaatcgat ctggcggata tcgattacat cgtgattaac catgcagaag
    28321 aggaccacgc tggggcgctg accgaactga tggcgcaaat tcccgatacg ccgatttact
    28381 gtactgccaa tgctatcgac tcgataaatg gtcatcacca tcatccggag tggaatttta
    28441 atgtggtgaa aactggtgac acgctggata tcggcaacgg caaacagctc atttttgtcg
    28501 aaacgccaat gctgcactgg ccggacagca tgatgactta cctgacaggc gacgcggtgc
    28561 tgttcagtaa cgatgctttc ggtcagcact actgcgacga gcatctgttc aacgatgaag
    28621 tggatcagac ggagcttttc gagcagtgcc agcgttacta cgccaatatc ctgacgccgt
    28681 tcagccgcct ggtaacaccg aaaattaccg agatcctggg ctttaactta ccagtcgata
    28741 tgatagcgac ctctcacggc gtggtatggc gcgataaccc gacgcaaatt gtcgagctgt
    28801 acctgaaatg ggcggctgat tatcaggaag acagaatcac cattttctac gacaccatgt
    28861 cgaataacac ccgcatgatg gctgacgcta tcgcccaggg gattgcggaa accgacccac
    28921 gcgtggcggt gaaaattttc aacgtcgccc gaagcgataa aaacgaaatc ctgaccaatg
    28981 tcttccgctc aaaaggcgtg ctggtcggca cttcgacgat gaataacgtg atgatgccga
    29041 aaatcgccgg gctggtggag gagatgactg gtttacgctt ccgtaacaaa cgcgccagtg
    29101 ctttcggctc tcacggctgg agcggcggtg cggtggatcg tctttccacg cgcctgcagg
    29161 atgcgggttt cgaaatgtcg cttagcctga aagcgaaatg gcgaccagac caggacgctc
    29221 tggagttatg ccgtgaacac ggtcgcgaaa tcgcccgtca gtgggcgctc gcgccgctgc
    29281 cgcagagcac ggtgaataag gtagtcaaag aagaaacctc tgccaccacg acggctgacc
    29341 tcggcccacg gatgcagtgc agcgtctgcc agtggattta cgatccggca aaaggcgagc
    29401 caatgcagga cgttgcgcca ggaacgccgt ggagtgaagt cccggataac ttcctctgcc
    29461 cggaatgctc cctcggcaaa gacgtctttg aagaactggc atcggaggca aaatgagtaa
    29521 cggcattgtg atcatcggtt cgggcttcgc cgcccgccaa ctggtgaaaa atattcgcaa
    29581 acaggacgcc actattccat taaccctgat tgccgccgac agcatggatg agtacaacaa
    29641 acctgacctc agccatgtta tcagtcaggg gcaacgtgcc gatgacctta cccgccagac
    29701 ggcgggtgaa tttgccgagc agtttaatct gcacctgttt ccacaaacct gggtgacgga
    29761 tatcgatgcc gaagcccgtg tggtgaaaag ccagaataat cagtggcaat acgacaagct
    29821 agtactggca accggtgcca gtgcctttgt cccgcctgtg cctgggcgtg agttaatgct
    29881 gacgttaaat agtcagcaag agtatcgcgc ctgtgaaacg caactgcggg atgcccgacg
    29941 cgtgttgatt gttggcggtg gtttgattgg tagcgaactg gcgatggatt tttgtcgtgc
    30001 aggcaaagcg gtcacgctaa tcgacaacgc tgccagtatt ctggcgtcgt taatgccacc
    30061 ggaagtaagc agccgcttgc agcatcggtt gacggagatg ggcgttcatc tgctgttgaa
    30121 atctcagtta caggggctgg aaaaaacgga ttctggcatt ctggcaacgc tggaccacca
    30181 gcgtagtatc gaagtggatg cggtaattgc cgccaccgga ctgcgcccgg aaacagccct
    30241 ggcacgacgc gccgggctga cgattaatcg cggcgtttgc gtcgatagtt atctgcaaac
    30301 cagtaatgac gatatttatg cgctgggcga ttacgcggaa atcaacggtc aggtactgcc
    30361 attcctgcag ccgattcaac ttagcgcgat ggtgctggca aaaaatcttc tcggcaataa
    30421 cacgccgctg aaactaccga cgatgctggt gaaaatcaaa acgccggaat taccgctgca
    30481 tctggcaggc gaaacccagc gtcaggattt acgctggcaa attaataccg aacgctaggg
    30541 aatggtggct cgcggtgttg acgatgctga ccagcttcgc gcctttgtgg tcagtgagga
    30601 tcggatgaaa gaggcatttg gattgttgaa aacattgccg atgtaggtgg gctactgtgc
    30661 ctaaaatgtc ggatgcgacg ctagcgcgtc ttatccgacc tacggggacg catgtgtagg
    30721 ccggataagg cgtttacgcc gcatccggca atggtgtcca aatgcaacac gttttatccg
    30781 ttctggactt cacccgctaa ccaacgcgcc gcagcaataa ccccctgccc cagagacaaa
    30841 ccgccatcac ccgccggtaa actctgtgga aagagcaatg tgaaatcagc gagataatgc
    30901 gccagacgtg cacgcagcaa acggttatga ataaccccgc cgctaaatac cagcgtagtg
    30961 ataccacgca tcgtggcctg ctcacgcatc aacgcggcaa aaccctgcgc cagcgcatca
    31021 tgaaacgccc acgcgcgttg attaacctgt gcctgccagt tcagccactg ctgccagaaa
    31081 gcggcgagat ccagttgatt gtccaccagc ggcatcgtca ccggatgcgt cactccgtgg
    31141 catgaggctg cgagcgcctc cagagcacaa gccgcttcac cttcataact taacgtggct
    31201 ggcgcacagc ccagtgccgc cgccactgca tcgaacaacc gcccacacga tgacgccagc
    31261 ggcgcgttaa ttccacgctc aatggcccgc gccagcacgc tccagttttg ctgttgcaca
    31321 cttgctgttt cagggtaatt ctgccactcc ggcacaaagc gcaggcactg cgccagcagg
    31381 tttcgccacg gctgcttcgc tgccaaatcg ccacccggaa gcgccactgc aggcaagccg
    31441 cccaggtgct cacattcgcg atagttcacc cgcaggcact cgccgcccca caaagcgccg
    31501 ttctccccca taccgatacc gtcgagcgtc aaagcaatga catcaccgcc atccagcggc
    31561 cactgatgct ctgccagaca cgccgctgca tgggcatgat gatgcagtac cgtttgcgtc
    31621 ggcagattca tttcacgcgc ccactggctg gagacatagc ccggatgcgc gtcatgcaca
    31681 acgtatttcg gggtaaaatc gtagatgttt tgcatcaggc gtaacgcttc gcgccactgc
    31741 atctggatgc catcgtcact taaatcgccc agatgctgac tcaacaccgc ttgttcaccg
    31801 cgcaccaggc agaaggtatt tttcagatcc gctccgagac acagcacagg cggaacattt
    31861 ttaaagcccg gaggcaaagc cagcgcatcc ggcacatacc cccgcgaacg gcgcagcatt
    31921 tcgccgcttt cgcgcaccac cgaatcatcc atccgctgca cgatgtcgcg gttatgtatc
    31981 aagaatccgt cggcaatgcc ctgcaaatcc gccagcgcct gttcgttgct gatagctggt
    32041 ggtttaccgc tcaggttgcc ggaggtcatc accagcgggc attgcagttc ctgtaacagc
    32101 aaatgctgga gcgggttcgc aggcaacatt accccgactt cgttaaggtc aggggcgata
    32161 tcatcacaaa gctcaggaac gtatttttta tccaccagca caatcggcgc ggcgggcgtg
    32221 gtaagcaact ggcgcgcagc gtctggtaaa ccgtcagcca ctggcaacat gaccgccagc
    32281 ggtttcgccg ggcgatgttt gcgcgcccga agtgtcgcca ccgcgttact gttacgtgca
    32341 tcgcaggcaa gatgaaatcc gccaatccct ttgatggcga caatgttgcc catttttaac
    32401 tgtgcgatag ccgcctgtaa tgccgcctct tgttctgcat gttcaccatg acttacccat
    32461 tcaagatgcg ggccacactc cgggcaggcc accggctggg cgtggaagcg acgatcgagc
    32521 gggtcgcggt actctttgtc acaagccgga cacaacggaa acgccgccat cacggtaaac
    32581 gggcggtcgt aaggcatggc gcgaataatg gtgaaacgcg ggccgcagtg ggtacagttg
    32641 ataaacggat aacgataacg ccgttcgcct ggggtattca tttcggcaag gcaagcaggg
    32701 caagtagcgg catccgggac aatttgcgta ttcatggcac ctcccgcgct ctggcggatg
    32761 gtgaactcag tgggcagttg tgaccagatg tacggctcac gctcgacgct atcaatacgc
    32821 gccagcggcg ggcagtgctg atgcaattga acaagaaacg tttccgggtc ttcccgcagc
    32881 cggacttcta cgccatcgcc gtcattacag acatcgccgt gaagatttaa ttgctgtgcc
    32941 agctgccaga caaacggacg aaaaccgacg ccctgcactt tgccacgaat acgcagttgg
    33001 acaccgcaag atgtgttttt tgccattgag ttattcccgc catcatgaat tgcgtaaccc
    33061 gcccagccgg acacgacagc gtcgcatccg gcagtcacag gtcggcgata ccgcctgctc
    33121 cgtattctac gaatatttcc gggaattcct ttgatgccag aacagttctg taagattttt
    33181 agaacatcag cgccgtacgg cggcgttttt ctgcactcag ttgttcaagt ttattacgat
    33241 cgacacaaat cagcgcatga gtcgggcaag ccgccataca cgccgggccg tcttcacgat
    33301 ggttgcacag gtcacattta ttggcttcgg ctttgtcagc ccgtacattc agccccgcgc
    33361 cgctgttgcg aatcaccgga cgtaccacca cttccatcgc gccatacggg caagccacaa
    33421 cgcaggtttt gcaaccaatg caacgttcct gcatcacatg aacaaaccct ttatcacggc
    33481 tgatagcacc attcgggcag acgttagcgc acggtgcatc ttcacactga cggcaaactg
    33541 tcgccgtgga aatgttcaca cctttaatga catggatacg cggtaaaaat gtttccgggg
    33601 tcagcgatgc acagtcctga ttttcctgat gagaaaccac gcacgccact tcacaggtac
    33661 ggcaaccaat acatttactc gcgtcagcaa tgatgaaacg gttcatcaaa ttctccagca
    33721 atgacagtta atgcgccgat acattcacaa atcatgccag tttttaattc actgttattt
    33781 aaggaaatta atttctgtaa tgcaggaaaa aagatgtcat cgacactagt gacgatgaca
    33841 tgtgatgaca atgtttatcg cgaaagagca atgagtgagt cgcggtggat cagttttccg
    33901 ctgaaggttt tcggcggtga gaaatccccg ccatcgagca taaaaatcag ccgtccaata
    33961 atttcctgaa tcatctcagt caccggaatt tttacgctgg agagcgccgg aacgatatag
    34021 ggggcaattg cgatatcatc gaatccgata actgacacct gctctggcac cgctacgccg
    34081 cgctcgtgca acgctttcat cgcacctatc gccatatcgt cgttactggc aactaacgcg
    34141 ctaaatttag ccccacgttc gagcaacgtt tctacccctt cggccccgct ggcgggcgtc
    34201 catttaccgt tagcgataag tttttcattg agcgcaatac catgctgcgc cagcgcgtct
    34261 ttatacccag caagacgttc aatgctggtg ggggaatcca tcgagccggt aaggaaagca
    34321 atctcctgat gtccggcgtt tatcaactct gccacggcat taaagctggt ctgtttatga
    34381 tcgcaccaga cgctatggct gctgtttttg cgcaggcggc gattaagcac cattatcggc
    34441 tgactgtgcg cgtcaatgat gtcatcgatc tcatccacgc ttaaaaaacg cgggtaaatc
    34501 ataatggcgt tgcagcgcaa atccagcaga tactgaatcg cctggcgctc ttcttcggcg
    34561 ctgtgtttac catctgccaa tagcaactgc cgccctttct cttccgccat tcgcgcggca
    34621 tgaaagagta attcactaaa ataaatgccg tggtaaagcg tgttggtcac taccagcccc
    34681 agcgtctgag tactcttcgc cgacagattg cgcgccagca agtttgggcg gtaaccgctc
    34741 tcttctaccg cctgaaacac gcgatcttta gtctcctggc tgacgtagcc attacctgaa
    34801 agcacgcggg aaacggtcgc ttttgaaacc ccggcgcgct tcgccacttc cagcatcgtc
    34861 gtcatcattt tcatcccttt acacgcaatc aacgcagtgt actgcaccgt ttgccgattg
    34921 tccttgcgca atcggcggga aaaatattca ggtgaccggt ttcacaaata taaaaaatga
    34981 ataattaact ctcttgctta tttagtgaca actattcatg attttgtgaa accggtttcc
    35041 taattccgtt tcagcatcgg catttttccg ttacgtcgac tgataacaac tacatctacc
    35101 ctactgataa caggataaaa tccgatggcc aaaaattatg cggcgctggc acgctcggag
    35161 atagcggcac tgggcggcgt tgataacatc tcggcggtca cgcactgtat gacgcgtttg
    35221 cgctttgtta tcaaagatga ccagcttatc gacagcccga cgttaaaaac catccccggc
    35281 gtgctcggcg tggtacgtag tgacaaccag tgtcaggtga ttatcggcaa taccgtttca
    35341 caagcctttc aggaagtcgt cagcctgctg ccgggagata tgcagcccgc acagcccgtg
    35401 ggtaaaccca aactcacgcc gcgtcgcatt ggtgtgggga tcctcgatgc gctgatcggc
    35461 accatgtcac cgctgatccc ggcgattatc ggcggatcga tggtcaaact gctggcgatg
    35521 atcctcgaga tgagcggcgt gctgacaaaa ggatcgccga ccttaaccat tctgaatgtg
    35581 attggtgacg gtgctttctt cttcctgccg ctgatggtcg cggcatctgc cgacatcaaa
    35641 tttaaaacca atatgtcgct ggcgattgcc atcgcgggtg tgctggtaca tccgagtttt
    35701 attgaactga tggcgaaagc ggcccagggt gaacatgtcg aatttgccct gattccggtc
    35761 accgcggtga aatacaccta cacagtgatc ccggcgctgg tgatgacctg gtgcctgtca
    35821 tatatcgaac gctgggtgga tcgcattaca ccggcggtga ccaaaaactt cctcaagcca
    35881 atgctgattg tgttgattgc cgcaccgctg gcaatcctgc tgattggccc gattggtatc
    35941 tggatcggta gcgccatttc ggcgctggtt tacagcattc atggttatct gggctggctt
    36001 tcagtcgcca ttatgggcgc gctgtggcct ctgctggtaa tgaccgggat gcaccgcgtc
    36061 tttacgccaa ccatcattca gaccattgcc gaaaccggca aagaagggat ggtcatgccg
    36121 tcagagatcg gcgctaacct gtcgctgggc ggttcatcac tggcggtggc gtggaaaacg
    36181 aaaaacccgg aactgcgcca gacggcgctg gctgcggcgg catcagccat tatggcgggg
    36241 atttccgaac cggcgttata cggcgtggcg atccgcctga aacgtccgct tatcgccagt
    36301 cttatcagcg gttttatttg cggcgcggtt gccggtatgg cggggcttgc cagccactca
    36361 atggcagcgc cggggctatt taccagcgtg caattcttcg atccggcgaa tccaatgagc
    36421 atcgtctggg tgttcgcggt catggcgctg gcggtggtgc tgtcgtttat cctcacactg
    36481 ttgctcggct ttgaggatat tcctgttgag gaagcggctg cccaggcgcg aaagcatcag
    36541 agcgtacaac cgaccgtcgc caaagaagta agtcttaatt gaggatgaaa atgtcagtat
    36601 ttccagaagg ttttttatgg ggcggcgcgc ttgccgccaa ccagtctgaa ggtgcgttcc
    36661 gtgaaggcgg aaaagggctg accaccgtcg atatgatccc acacggcgag catcgaatgg
    36721 cggtgaaact ggggctggaa aaacgttttc agttgcgcga tgacgagttt tatcccagcc
    36781 atgaggcgac ggatttttat catcgttata aagaagatat cgccctgatg gcagagatgg
    36841 gattcaaggt tttccgtacc tcaattgcct ggagccgtct ctttccgcag ggcgatgaaa
    36901 tcacgcccaa tcagcagggc attgcttttt atcgttctgt ctttgaagag tgtaaaaagt
    36961 acggtatcga accgctggtc acgttgtgcc acttcgatgt gccgatgcat ctggtcaccg
    37021 aatatggctc ctggcgtaac cgcaagctgg tggagttttt cagccgctac gccagaacct
    37081 gctttgaagc atttgatggt ctggtgaaat actggctaac cttcaatgaa atcaacatta
    37141 tgttgcatag cccgttctcc ggcgcgggtc tggtgtttga agaaggtgaa aatcaggatc
    37201 aggtgaaata tcaggccgcg catcaccagc tggttgccag tgcgctagcc gccaaaatcg
    37261 cccatgaggt taacccgcaa aatcaggtgg gctgtatgct ggcgggcggc aacttctacc
    37321 cttacagctg caaaccggaa gatgtctggg cggcgctgga gaaagatcgg gaaaacctgt
    37381 tttttatcga tgtgcaggcg cgcggcgcgt atccggctta ctctgcccgc gtatttcgcg
    37441 aaaaaggggt aaccatagat aaagcgctgg gcgatgatga gatcctgaaa aacaccgtcg
    37501 attttgtctc tttcagctat tacgcctcgc gctgcgcctc ggcggagatg aacgccaaca
    37561 acagcagtgc ggcgaacgtg gtgaaatcgc tgcgtaaccc gtatctgcaa gtgagcgact
    37621 ggggctgggg aattgatcca ctcggtctgc gtatcaccat gaatatgatg tacgatcgtt
    37681 atcagaagcc gctgtttctg gtggaaaacg gcctcggcgc aaaagatgaa cttgctgcca
    37741 atggcgagat taacgatgac tatcgcatca gctatttacg cgaacatatc cgcgcaatgg
    37801 gcgaagcgat tgcagatggc attccgctga tgggctacac cacatggggc tgtattgatt
    37861 tagtttccgc ctctacgggt gaaatgagca aacgctacgg ttttgtctac gtagaccgtg
    37921 acgacgcagg caacggcacg ctgacgcgca cacgtaagaa atcgttctgg tggtataaaa
    37981 aagtgattgc cagtaatggg gaagatttag agtaagtaac agtgccggat gcggcgtgaa
    38041 cgccttatcc ggcctacatg tcgcacgaac caggaaggcc cgataagcgc agcgcatcgg
    38101 gcaatttagc atttggcatc agagctggtt caccccatca agaacatccc tgtcctgatt
    38161 ccttaatgaa aaactactct tcttccaccg ctaactgcgc gaagccgcca ttcccttccc
    38221 agccttccag tcgttgataa acggtttcta ccgcatcttt aatcggctgg gtcatcgggt
    38281 agtaaaagcc gacgatatcc ggctgtatgc cgaggaaaat cacttcgcca atatcttctt
    38341 tcaactggtc gataagatag ttcagaggca tgttatgggt agtcatcata aacatctcgg
    38401 cgatatcatc cgggtcgatg atgcggatct cgccggggtt tagccccata tccgtggcgt
    38461 cgacaatcag taaccgcgta gggcgcagtt cacggatggc gacgatgtcg ttttccggtg
    38521 cactaccgcc gtcaatcacc acccagttac ctttcggcgc ggcggcgcac ttttccgcca
    38581 gcagcggacc tgcgccatca tcgcccatca tgctattgcc aacacagagt aaaacgtcag
    38641 tcacgcaatc tcctcaccat caaatagatg gcgttttcct gatgaatatc atgcagcata
    38701 cttaacagca ttgtactcca ttcctgctgc tgcgaagttt gcgctgcccg ggctttatcg
    38761 aatgcgttgg ccagcatcgg cacatggtta atgtcgatga cgatctcacc gtacttcggt
    38821 acgccttcca ttttgcggcg ggcttcactg cccgcctcca gagtggcaat ccatgccaga
    38881 tattcatccc acgggcaggt gagcgccgct tccaggcaat cgataacccc aaggtggtga
    38941 ccaatcgcca ggctgtaata gaccacctgc tgcgcctcgg cgggcgtggc atcgttctca
    39001 tcaataaatt tacggctcag ttgactgaac accacctttt cactcatcgg atacgcacct
    39061 cttctacaac atgattcaga tggctgacaa tctcgttcag acgcggatcg ttttccgctt
    39121 ccagccagcg tgcaacctgt tcttcgccct gccctaactg tgtcaggaag tcatcggcaa
    39181 tctgacgacc gtaacgataa cccgccaggc ggcgtgcttc gcgatccact ttcacgcgca
    39241 gcggctgcac catatcgcca tgcaggatct ccgccggttg ttcatccagt tcacccggcc
    39301 cacgggcgtg aattttctgc tccagcaggc cgagcgccat tgcaaagccg tacagcgtgg
    39361 cggcaggcgt tggcgggcag ccagggatat aaacatccac agggacaatt ttatccgtac
    39421 cgccccacac gcagtagaga tcgtggaaga tcccgccgct gttaccgcag gcaccgtagg
    39481 agatacaaat tttcgggtcc ggcgcggact gccacgcacg cagcgcaggg gatcgcattg
    39541 cacgggtgac cgcgccggta aacagtaaaa tatccgcatg acgcggtgaa ggaacgactt
    39601 taatgccgaa gcgttctgca tcaaacagcg gcgataaagt ggcgaaaatt tcgatttcgc
    39661 agccgttgca gccgccgcag tccacgcggt aaacataggc agaacgtttg atttttttca
    39721 gtaacgacgc cttcatgctg gcgatggatt catccaccgt catcgggacc ggaatgccgt
    39781 tggcgtcacg ggggcctaat aaattgctca tcagatggcc tctttcatat ggcgagtcag
    39841 ttcaatacgg tcggacggca ccaggcattt ctggcgctta cattccgggc aagtctcaaa
    39901 gctttcgcgg tggttttccg cgcggctgtc gccgttgtgc ttaagcagcg caatggcgta
    39961 gtcgatctct ttctggacgg cgaaaggacg attgcagacg cgacagttgc acagcgcgaa
    40021 gcgagactgt tgcaggaagt cttctttctt ccacaccgcc agttcgtact cttgcgacag
    40081 cttaatcgcc gccgtcgggc aaacttcttc gcagcgtcca cagaagatgc agcgcccgag
    40141 attaaactcc caggccagct ctcctgtggc gaggtcagtt tcaaccgtta aggcgtttga
    40201 cgggcaggca ttgacgcagg ccgcgcagcc gatgcactgc tgcgggttct gctctggctt
    40261 accacggaag tttttatcaa ccgcaatcgg ctccagcgga taagacgagg tcgccgtacc
    40321 ggttttgata acttttttga taaaggtaaa catggcgatt ccttatttca gcggcgagtt
    40381 tttacgctca atgctgtagc gctcgagttc tttgtacggc accactttgc tcttcttctt
    40441 acgtacatcg accacagtca tgcggtcggt acaggagtag caagggtcca ggctaccgat
    40501 aatcagcggc gcatcggaaa cagtgttgcc acgcagcatg tagcgcaggg tcggccagtt
    40561 cgcgtaggtc gcggcacggc agcgccagcg gtacagcttc tggttgtcgc cagtcatgct
    40621 ccagtggata tcatcaccgc gcggcgcttc ggcaaagccc agcgcgaaac ggtgcggaat
    40681 gtaggtaaag ccttccacca tcagcgggcc acccggcagg ttatccagac cgtagtcgat
    40741 catgttcagc gcggtataga cttcgttgat acgcactttc agacgcgaaa taacgtcgca
    40801 gccctgctcg ctgtggactt ccattggcag caggccataa ccaacaaacg ggtgatcagc
    40861 gcgggtatcg cgagcgtgtc cgctggcgcg gaccatcggg ccaacgttac tgaaatcgcg
    40921 ggcaatttcc gggtccagac gaccaatgcc gacggtgcgc tgttccatgt tcggtgtgct
    40981 cagcagcaca tccaccagct cctgcacttc acgacgcatc tgttgcgcca gctggcgggt
    41041 ctggatcatg tcatctttca acagatcgcg acgaatcccg ccgatcaggt tcaggccgta
    41101 ggttttacgc gcaccggtga ggatctcggc cattttcatg gaggtttcac gcacgcggaa
    41161 gaattgcata aagccggagt cgaagccggt aaagtggcag gcgaggccga ggttgagcag
    41221 atgcgagtgc aggcgttcca cctccagcag aatggcgcgg atcatctgcg cacgttctgg
    41281 cacctgaata cccatcgcgt tttccaccga cgtggtgtag gcggtgctgt gggcgaagcc
    41341 gcagatcccg cacacacggt cagagaggaa ggtcacttcg ttataaccca tgcgggtttc
    41401 cgccagtttt tccataccgc gatggacata gaacaagcgg tagtctgcgt cgataatgtt
    41461 ttcgccatcg acgaacagac ggaagtggcc cggttcgtca gaagtgacgt gcagcggacc
    41521 aatcggcacg acgttgtttt tcttgtcgcc cagttcgttg atgaactcgt aggtttcagc
    41581 atcggtggtc ggtgccggac gctgacgata atccatgctg tctttacgca gcggataaag
    41641 ttcatccggc cagtcatccg gcagcaccag acggcgttca tccggcagac caaccggaat
    41701 caaaccgtac atatcgcgca cttcgcgctc gccccacacc gccgccggaa cgcgcggcgt
    41761 cacggacgga tactccggtt tgttggcatc aacttcgacg cgaaccgtta cccagcactt
    41821 agtccccttc tccatcgaca gcacgtaata aacggcgtaa tgaccattca gtttgcgttc
    41881 gtcgttacca aaaagcaccg acagccagcc cccctgcttg tagtagagaa actccaccac
    41941 ttccggcaga tagttcacct ttacggtgac agtcagctga tctttggtct gccaggcgtg
    42001 gtccagcacg acgcccggaa atgcctcatt cagcgcggcg agataatgtt gacctaattt
    42061 ttcttcagac atgctcaaac tctctttaat cacgccgcca gcaaggagac gaacgctaaa
    42121 aatgcaaagc caaacccagc ccaggtaatg cgcggagtaa tatcaagacg cagacgggcc
    42181 atgctgtttt cgaacagcgc gataaccagg acgccgacca ccagttttac gatcgcaatc
    42241 accagcgcca gcagcagtcc accggcggtg aaggtttcca tttgtcccca cggaataaac
    42301 accccgacga acatctgcaa caccaccagc tgtttcaggc tgatacccca tttcatgacg
    42361 ccaaagccgc tgccgctata ctcagagagc ggaccttcct gcaactcctg ctcggcttcc
    42421 gccaggtcga acggcagttt gcccatttcg ataaaagtgg cgaacgcaca ggcgcagagc
    42481 gccagcacca gcgggatgct ttggctcagc ggccagtgat aaacggtgtc ggtaatgttg
    42541 ctgatgttgg tggaaccggc aacctgtgcg gcaacccaca gaccaagcag caacatcggt
    42601 tcgaccagca cgccaagcat cgcttcacgg ctcgcaccga tagcggtaaa cgggctaccg
    42661 gtatccagac cggaaatggc aaagaagaaa cgcgcgatgg cgaagagata cagtaaggtg
    42721 atcaaatcgc ccagttgcgg cagcggagaa ccgacggtca ccaccggcag cgcagtagcg
    42781 atagtcagca tgacgcccac catcacatac ggcgtcaggc ggaacaccca gccagaggca
    42841 tccgggccaa cgctctggcg gcccagcagt ttgataatgt cgcgatactc ctgcaacacg
    42901 cccggcccgc gacggttatg cagacgggcg cgcgccacgc gggtaatacc ggagagcagc
    42961 ggcgcaacgg caaataacac cagcgcctga attaacggat ataaaacact cattctcagg
    43021 ctcctcgtga aacaataatc accaccagta ccgccagttc aaccagcgcc atccggcgga
    43081 acagcaacgc actaccttcg cactgccagc ccggcaccag cgacaccgga ttcagccatt
    43141 tgcgcagttt cagcactggc gcaaacgcct gtttaaccgg catggcaaaa ccgtgagcgg
    43201 taatcaccat tgatttttca tggtcgtagc cgcacaccca ggccgcaccg cgggaacgtg
    43261 acggcaggcg gtcgcctttg caaatcgcca taatgatgaa tggcagcagc gggcaggcaa
    43321 tcagcagcaa tgtgatcatt ggttgagaaa cggtggtgtt agcaggctcc agaggcagag
    43381 gtacggcagc agagagcatc ggcagcagcc acggcgcagc aacaccgcca attacgcagc
    43441 aaatcgccag tgccactacg cttacgctca tcaggagcgg cgcacaggtg gcgttttcgg
    43501 cttctttggt acgcggcgcg ccgaggaacg tgacgccata gactttcgcc atacacatca
    43561 ccgccagcgc accggtaatt gccagaccca cagcgagcag cggccccagc agacgggcaa
    43621 caaacgcgcc actattgctc agtttgaaaa aggattgata gataacccat tccccggcaa
    43681 acccgttcag cggcggcagc gcagccattg ccatcaaccc gactaacatg gcgatggaga
    43741 taaccggcat tttcttgcca ataccaccga gtttttcgat atcgcgatga ccggtacgga
    43801 accagacgct ccccgccccg aggaacagta cgcttttgaa caggctatgg ttaagcagat
    43861 ggtacagacc accgaccagg ccaagagcaa tcagcgccgg ttgttcgagc gcgatacccg
    43921 ttacgccagc gcccagcccc agcaggataa tgccgatatt ttccagggtg tggtaagcca
    43981 gcaggcgctg gatgttgtgc tccatcagcg catacagacc accgacaaac gcggtgatca
    44041 tgccgagcac cagcagcacg atcccccacc acagcggtgc attaccgccc agcagtgaca
    44101 gggttaaaat gcccagcagg ccaattttca tgactaccgt agaaaacaac gcggcagctg
    44161 gcgcagaggc gttagcatgt gcctgcggca cccagccgtg cagcggaata atcccggcga
    44221 gcaggccaaa gccaatcaca ccgagcagcc agatatcgga accgagcggc agctgttgca
    44281 tacgcatatc cagcaggcgc agatccagcg tgccataacg ctgccacagc agccagcaag
    44341 caatcgccag cagcagagtg ccaagacgcc ccagcgcaaa ccacagtttg ccctcttttg
    44401 tttcgacgta atactcgatg gtgtggctgt taaagccatc cgccagggtg acgtaaatac
    44461 gaaaatgttc aaaaaggacg aaacagagtt ctttgtccgg cgcgcagctc atggcgtgat
    44521 gcaggcgcgc tttcgataac gtgatcccct gaaccagcga attgcagtag atgtgccact
    44581 ggtcctgtag gcgacgatgc cgctgtgcga tgtaatcggc tttctcgctt atttcccaaa
    44641 tagtcattgt caggttaccc gtttaacaga gatgccagct ttaagcattt tctgtgccaa
    44701 tttttaattt attgttatta aaacgatttt taagctaaag atgaatttcg tcgccgtgtc
    44761 gacgtgtcat ttcgacatca tcgacattat tcaccgcagg gataatcaac actggcacaa
    44821 ttattgcttg tagctggcaa tagttaatgg gaggcgatat gcacgaaata accctctgcc
    44881 aacgggcact ggaattgatc gaacagcagg ccgcaaaaca cggcgcaaaa cgcgtaactg
    44941 gggtctggct caaaattggc gcattttctt gtgtcgaaac cagctctctt gccttttgtt
    45001 ttgatctggt ttgccgcggc agcgtggcgg aaggttgtaa actgcacctc gaagaacaag
    45061 aggtcgaatg ctggtgtgaa acatgccaac agtatgtgac gctattgacc cagcgcgtcc
    45121 gccgctgtcc acagtgtcat ggtgacatgc tacagattgt ggcagacgac ggtttacaga
    45181 ttcggcggat agaaatagac caggagtgag cgatgtgtac aacatgcggt tgcggtgaag
    45241 gcaacctgta tatcgagggt gatgaacata accctcattc cgcgtttcgt agcgcgccat
    45301 ttgccccggc ggcacgcccg aagatgaaaa tcaccggcat taaagcgcct gaatttaccc
    45361 ccagccagac tgaagaaggc gacctgcatt acggtcatgg cgaagcgggc actcacgcac
    45421 cgggcatgag ccagcgtcgg atgctggaag tcgaaattga cgtgctggac aaaaacaacc
    45481 gtctggctga acgcaaccgc gcgcgctttg ctgcccgcaa gcaactggtg ctcaacctgg
    45541 tttccagccc aggttccggt aaaaccaccc tgctgacgga aaccctaatg cgcctgaaag
    45601 acagcgttcc gtgcgcggtt attgaaggtg accagcaaac cgtgaacgat gccgcacgca
    45661 ttcgcgctac cggcacacca gcgattcagg tgaacacagg taaaggctgc catcttgacg
    45721 cacagatgat tgccgacgcc gcaccgcgtc tgccactgga cgataacggt attctgttta
    45781 tcgaaaacgt tggcaacctc gtatgcccgg ccagcttcga tctcggtgaa aaacacaaag
    45841 tggcggtgct ttccgttacc gaaggtgaag acaaaccgct gaaatatccg catatgtttg
    45901 ccgccgcctc gctgatgctg ctcaacaaag ttgacctgtt gccgtatctc aactttgacg
    45961 ttgagaagtg catcgcctgc gcccgcgaag tcaatccaga aattgaaatc atccttattt
    46021 ccgccaccag cggtgaaggg atggaccagt ggctgaactg gctggagaca cagcgatgtg
    46081 cataggcgtt cccggccaga tccgcaccat tgacggcaac caggcaaaag tcgacgtctg
    46141 cggcattcag cgcgatgtcg atttaacgtt agtcggcagc tgcgatgaaa acggtcagcc
    46201 gcgcgtgggc cagtgggtac tggtacacgt tggctttgcc atgagcgtaa ttactgaagc
    46261 cgaagcacgc gacactctcg acgccttaca aaacatgttt gacgttgagc cggatgtcgg
    46321 cgcgctgttg tatggcgagg aaaaataatg cgttttgttg atgaatatcg cgcgccggaa
    46381 caggtgatgc agttaattga gcatctgcgc gaacgtgctt cacatctctc ttacaccgcc
    46441 gaacgccctc tgcggattat ggaagtgtgc ggtggtcata cccacgctat ttttaaattc
    46501 ggcctcgacc agttactgcc tgaaaacgtt gagtttatcc acggtccggg ttgccctgtg
    46561 tgcgtactgc cgatgggtag aatcgacacc tgcgtggaga ttgccagcca tccggaagtc
    46621 atcttctgta cctttggcga tgccatgcgc gtaccaggga aacagggatc gctgttgcag
    46681 gcaaaagcac gcggtgccga tgtgcgcatc gtttactcgc cgatggatgc gttgaaactg
    46741 gcgcaggaga atccaacccg caaagtggtg ttcttcggct taggttttga aaccaccatg
    46801 ccgaccaccg ccatcactct gcaacaggcg aaagcgcgtg atgtgcagaa tttttacttc
    46861 ttctgccagc acattacgct tatcccgacg ctgcgcagtt tgctggaaca gccggataac
    46921 ggtatcgacg cgttcctcgc gccgggccac gttagtatgg ttatcggcac tgatgcctat
    46981 aattttatcg ccagcgattt tcatcgtccg ctggtggtcg ctggtttcga accccttgat
    47041 ctactgcaag gcgtggtgat gctggtggag cagaaaatag cggcccacag caaggtagag
    47101 aatcagtatc gtcgggtggt accggatgcc ggtaacctgc tggcgcaaca ggcgattgcc
    47161 gatgtgttct gtgtcaacgg cgacagcgaa tggcgcggct taggcgtgat tgaatcttct
    47221 ggcgtgcacc tgacgccgga ttatcaacga ttcgatgccg aagcacattt ccgcccggca
    47281 ccgcagcagg tctgcgatga cccgcgcgcg cgttgtggtg aggtattaac gggcaaatgt
    47341 aagccgcatc aatgcccgct gtttggtaac acctgtaatc ctcaaaccgc atttggtgca
    47401 ctgatggtct cctccgaagg agcgtgcgcc gcgtggtatc agtatcgtca gcaggagagt
    47461 gaagcgtgaa taatatccaa ctcgcccacg gcagcggtgg ccaggcgatg cagcaattaa
    47521 tcaacagcct gtttatggaa gcctttgcca acccgtggct ggcagagcag gaagaccagg
    47581 cacgtcttga tctggcgcag ctggtagcag aaggcgatcg tctggcgttc tccaccgaca
    47641 gttacgtcat tgacccgctg ttctttcctg gcggtaatat cggcaagctg gcgatttgcg
    47701 gcaccgcgaa tgacgttgcg gtcagtggcg ctattccgtg ctatctctcc tgtggcttta
    47761 tcctcgaaga aggattgccg atggagacac tgaaagccgt agtgaccagc atggcagaaa
    47821 ccgcccgcac ggcaggcatt gccatcgtta ctggcgatac taaagtggtg cagcgcggcg
    47881 cggcagataa actgtttatc aacaccgctg gcatgggcgc aattccggcg aatattcact
    47941 ggggcgcaca gacgctaacc gcaggcgatg tattgctggt tagcggtaca ctcggcgacc
    48001 acggggcgac tatccttaac ctgcgtgaac aactggggct ggatggtgaa ctggtcagcg
    48061 actgcgcggt gctgacgccg cttattcaga cgctgcgtga cattcccggc gtgaaagcgc
    48121 tgcgtgatgc cacccgtggt ggtgtaaacg cggtggttca tgagttcgcg gcagcctgcg
    48181 gttgtggtat tgaaatttct gaatcagcac tgccggttaa acctgctgtg cgcggcgttt
    48241 gcgaactgct gggactggac gcccttaact ttgccaacga aggcaaacta gtaatagctg
    48301 ttgaacgcaa cgcagcagag caagtgctgg cagcgttaca ttcccatcca ctggggaaag
    48361 acgcggcgct aattggtgaa gtggtggaac gtaaaggtgt tcgtcttgcc ggtctgtatg
    48421 gtgtgaaacg aaccctcgat ttaccacacg ccgaaccgct tccgcgtata tgctaataaa
    48481 attctaaatc tcctatagtt agtcaatgac cttttgcacc gctttgcggt gctttcctgg
    48541 aagaacaaaa tgtcatatac accgatgagt gatctcggac agcaagggtt gttcgacatc
    48601 actcggacac tattgcagca gcccgatctg gcctcgctgt gtgaggctct ttcgcaactg
    48661 gtaaagcgtt ctgcgctcgc cgacaacgcg gctattgtgt tgtggcaagc gcagactcaa
    48721 cgtgcgtctt attacgcatc gcgtgaaaaa gacaccccca ttaaatatga agacgaaact
    48781 gttctggcac acggtccggt acgccgcatt ttgtcgcgcc ctgatacgct gcattgcagt
    48841 tacgaagaat tttgtgaaac ctggccgcag ctggtcgctg gtgggctata ccccaaattt
    48901 ggtcactatt gcctgatgcc actggcggcg gaagggcata tttttggtgg ctgtgaattt
    48961 attcgttatg acgatcgtcc ctggagcgaa aaagagttca atcgtctgca aacatttacg
    49021 cagatcgttt ctgtcgtcac cgaacaaatc cagagccgcg tcgtcaacaa tgtcgactat
    49081 gagttgttat gccgggagcg cgataacttc cgcatcctgg ttgccattac caacgcggtg
    49141 ctttcccgcc tggatatgga cgaactggtc agcgaagtcg ccaaagaaat ccattactat
    49201 ttcgacattg acgatatcag tatcgtctta cgcagccacc gtaaaaacaa actcaacatc
    49261 tactccactc actatcttga taaacaacat cccgcccacg aacagagcga agtcgatgaa
    49321 gccggaaccc tcaccgaacg cgtgttcaaa agtaaagaga tgctgctgat caatctccac
    49381 gagcgggacg atttagcccc ctatgaacgc atgttgttcg acacctgggg caaccagatt
    49441 caaaccttgt gcctgttacc gctgatgtct ggcgacacca tgctgggcgt gctgaaactg
    49501 gcgcaatgcg aagagaaagt gtttaccact accaatctga atttgctgcg ccagattgcc
    49561 gaacgtgtgg caatcgctgt cgataacgcc ctcgcctatc aggaaatcca tcgtctgaaa
    49621 gaacggctgg ttgatgaaaa cctcgccctg accgagcagc tcaacaatgt tgatagtgaa
    49681 tttggcgaga ttattggccg cagcgaagcc atgtacagcg tgcttaaaca agttgaaatg
    49741 gtggcgcaaa gtgacagtac cgtgctgatc ctcggtgaaa ctggcacggg taaagagctg
    49801 attgcccgcg cgatccataa tctcagtggg cgtaataatc gccgcatggt caaaatgaac
    49861 tgcgcggcga tgcctgccgg attgctggaa agcgatctgt ttggtcatga gcgtggggct
    49921 tttaccggtg ccagcgccca gcgcattggt cgttttgaac tggcggataa aagctccctg
    49981 ttcctcgacg aagtgggcga tatgccactg gagttacagc cgaagttgct gcgtgtattg
    50041 caggaacagg agtttgaacg tctcggcagc aacaaaatca ttcagacgga cgtacgttta
    50101 attgccgcga ctaaccgcga tctgaaaaaa atggtcgccg accgagagtt ccgtagcgat
    50161 ctctattacc gcctgaacgt attcccgatt cacctgccgc cactacgcga gcgtccggaa
    50221 gatattccgc tgctggcgaa agcctttacc ttcaaaattg cccgtcgtct ggggcgcaat
    50281 atcgacagca ttccagccga gacgctgcgc accttgagca acatggagtg gccgggtaac
    50341 gtacgcgaac tggaaaacgt cattgagcgc gcagtattgc taacacgcgg caacgtgctg
    50401 cagctgtcat tgccagatat tgctttaccg gagcctgaaa cgccgcctgc cgcaacggtt
    50461 gtcgctcagg agggcgaaga tgaatatcag ttgattgttc gcgtgctgaa agaaaccaac
    50521 ggcgtggttg ccgggcctaa aggcgctgcg caacgtctgg ggctgaaacg cacgaccctg
    50581 ctgtcacgga tgaagcggct gggaattgat aaatcggcat tgatttaact gcaaattgcc
    50641 ggacagatct gcctgtccgg catactattc acgaggtttt ttcggacgat atttttccgg
    50701 cagttctggc accggacgct tgtcatcgat gagatgacgc acggttaaga tcggatgacg
    50761 ccacagcatt ctcggcccgg cccaacgcat aatctgtttc atctcttcac gctttgcagg
    50821 ctggtaacag tgcaccggac actgcttaca ggctggtttc tcttcgccga acacacattt
    50881 atccagccgc ttttgcgcgt aaacaaacaa cgcctcgtaa tgctccggct ccgctgacgc
    50941 ctgcgggcat ttcgcttgat aaagatcgat cattttttta atcgtcagtt tttcacgaga
    51001 gatacgcttg ccggacatgc tgcctccata ctcttaaggt gtatttatat tacaacttaa
    51061 tttgaaaggg gactatggct ctgaaggagg aggtttattc aaccgacgca attttgcgta
    51121 cttgcttcat aagcatcacg caaaagctgc aaaacagcat ctttcccgga accagcatca
    51181 agaactcgcc gttcgcttct tcccctgaaa tgattaactc cggtatcatg tgcgccttat
    51241 gtgattacaa cgaaaataaa aaccatcaca ccccatttaa tatcagggaa ccggacataa
    51301 ccccatgagt gcaatagaaa atttcgacgc ccatacgccc atgatgcagc agtatctcag
    51361 gctgaaagcc cagcatcccg agatcctgct gttttaccgg atgggtgatt tttatgaact
    51421 gttttatgac gacgcaaaac gcgcgtcgca actgctggat atttcactga ccaaacgcgg
    51481 tgcttcggcg ggagagccga tcccgatggc ggggattccc taccatgcgg tggaaaacta
    51541 tctcgccaaa ctggtgaatc agggagagtc cgttgccatc tgcgaacaaa ttggcgatcc
    51601 ggcgaccagc aaaggtccgg ttgagcgcaa agttgtgcgt atcgttacgc caggcaccat
    51661 cagcgatgaa gccctgttac aggagcgtca ggacaacctg ctggcggcta tctggcagga
    51721 cagcaaaggt ttcggctacg cgacgctgga tatcagctcc gggcgttttc gcctgagcga
    51781 accggccgac cgcgaaacga tggcggcaga gctgcaacgc actaatccgg cggaactgct
    51841 gtatgcagaa gatttcgccg agatgtcgct gattgaaggc cgtcgcggcc tgcgccgtcg
    51901 cccgctgtgg gagtttgaaa tcgacaccgc gcgccagcag ttgaatctgc aatttggcac
    51961 ccgcgatctg gtcggttttg gcgtcgagaa cgcgccgcgc ggactttgtg ctgccggttg
    52021 tctgttgcag tatgcgaaag atacccaacg cacgaccctg ccgcatattc gttctatcac
    52081 catggaacgt gagcaggaca gcatcattat ggatgccgcg acacgtcgta acctggaaat
    52141 tactcagaac ctggcgggcg gtgcggaaaa tacgctggct tctgtgctcg actgcaccgt
    52201 cacgccgatg ggtagtcgta tgctgaaacg ctggctgcat atgccagtgc gcgatacccg
    52261 cgtgttgctt gagcgccagc aaactattgg cgcattgcag gatttcaccg ccgggctaca
    52321 gccggtactg cgtcaggtcg gcgaccttga acgtattctg gcacgtctgg ctttacgaac
    52381 tgctcgccca cgcgatctgg cccgtatgcg ccacgctttc cagcaactgc cggagctgcg
    52441 tgcacagtta gaaactgtcg atagtgcacc ggtacaggcg ctacgtgaga agatgggcga
    52501 gtttgccgag ctgcgcgatc tgctggagcg agcaatcatc gacacaccgc cggtgctggt
    52561 acgcgacggt ggtgttatcg catcgggcta taacgaagag ctggatgagt ggcgcgcgct
    52621 ggctgacggc gcgaccgatt atctggagcg tctggaagtc cgcgagcgtg aacgtaccgg
    52681 cctggacacg ctgaaagttg gctttaatgc ggtgcacggc tactacattc aaatcagccg
    52741 tgggcaaagc catctggcac ccatcaacta catgcgtcgc cagacgctga aaaacgccga
    52801 gcgctacatc attccagagc taaaagagta cgaagataaa gttctcacct caaaaggcaa
    52861 agcactggca ctggaaaaac agctttatga agagctgttc gacctgctgt tgccgcatct
    52921 ggaagcgttg caacagagcg cgagcgcgct ggcggaactc gacgtgctgg ttaacctggc
    52981 ggaacgggcc tataccctga actacacctg cccgaccttc attgataaac cgggcattcg
    53041 cattaccgaa ggtcgccatc cggtagttga acaagtactg aatgagccat ttatcgctaa
    53101 cccgctgaat ctgtcgccgc agcgccgtat gttgattatt accggcccga acatgggcgg
    53161 taaaagtacc tatatgcgcc agaccgcact gattgcgctg atggcctaca ttggcagcta
    53221 tgtaccggca caaaaagtcg agattggacc tatcgatcgc atctttaccc gcgtaggcgc
    53281 ggcagatgac ctggcttccg ggcgctcaac ctttatggtg gagatgactg aaaccgccaa
    53341 tattttacat aacgccaccg aatacagtct ggtgttaatg gatgagatcg ggcgtggaac
    53401 gtccacctac gatggtctgt cgctggcgtg ggcgtgcgca gaaaatctgg cgaataagat
    53461 taaggcattg acgctgtttg ccacccacta tttcgagctg acccagctac cggagaaaat
    53521 ggaagacgtc gccaacgtgc atctcgatgc gctggagcac ggagacacca ttgcctttat
    53581 gcatagcgtg caggatggcg cggcgagcaa aagctacggc ctggcggttg cagctctggc
    53641 aggcgtgcca aaagaggtga ttaagcgcgc acggcaaaaa ctgcgtgagc tggaaagcat
    53701 ttcgccgaac gccgccgcta cgcaagtgga tggtacgcaa atgtctttgc tgtcagtacc
    53761 ggaagaaacc tcgccagcgg tcgaagctct ggaaaacctg gacccggatt cactgactcc
    53821 gcgtcaggcg ctggaatgga tttatcgctt gaagagcctg gtgtaataac aattcccgat
    53881 agtcttttgc tatcgggaat attaacgaca actgacgaat aaaataaaaa ccccctgtat
    53941 aataggaaag cttattttac agggtaaaac catgccatct acacgctatc aaaaaattaa
    54001 tgcccatcac tatcgccata tatgggtcgt tggtgatata catggtgaat atcaattatt
    54061 acaatcccgc ttacatcaac tctctttttg ccctgaaacc gacttactta tttctgtcgg
    54121 cgataatatt gatcgtgggc cggagagtct tgacgtcctg cgcctgctaa accagccctg
    54181 gtttatctcc gttaaaggca accacgaagc aatggagctg gatgcgttcg cgaccggcga
    54241 tggcaatatg tggcttgcca gcggtggtga ctggtttttc gatttaaatg attcagagca
    54301 acaagaggca atagatctgt tgctgaaatt ccatcacctt ccacatatta ttgaaatcac
    54361 taacgacata ataaaatatg tcatcgcaca tgcagattat ccgggtgatg aatatctctt
    54421 tggcaaagaa atagcggaga gcgaattact ctggcctgtt tatcgtgtgc agaaatcgct
    54481 taatggcgag ttacaacaaa taaacggcgc tgattatttt atatttggac atatgatgtt
    54541 tgataacatt cagacgttcg ctaaccagat ttatattgat accggatcgc cgaaaagtgg
    54601 gcggctgtca ttttataaaa taaggtagtc tcatgcttct tctgtgaagc atgagtaacc
    54661 agatgttatt gcaggccatt attcattttt cgctaccagc aaagagagat cctgcttcgc
    54721 cagcgcgcga ctggcactct ccggcaaacc gtcgtctgta ataatctgat caaactcgct
    54781 taatggtaac gccagccatg tcgccacctg accatatttc gtcgcatcac agaccaaaac
    54841 tcgctggcgg ctggcactag caatcgcccg tttcaccgtg actttatctt ccgctggcgt
    54901 agaaatcccc cgcacactcc atgacgatgc agaaataaaa gcctgatcaa tcatcaggct
    54961 gcgcagcatg gtcgcagcgg cttccccgac acaggaacgg ttttcccgac acactgcacc
    55021 gccagtgtga ataattgtgc aattactgtt gtcgagcaag tagttcgcaa taacgaaatc
    55081 gtttgtgacc acagtcagtg actccatgtg aatcagatgc tgtgctatcg ctaacgtggt
    55141 cgttcctgca tccagataga tacaacttcc cggctgaaca agacttgccg ccagcttgcc
    55201 aatagccgct ttttgcgtca ttgctagcgc agtttttacc tgatgagaag gttcatgcgc
    55261 cacgcgtccc ggagactgga cgcctccgga caccagcaca acggctccct gctgctccag
    55321 tttttgtaaa tcccgacgaa tggtcatatg tgatacattc attctgtccg ttagttcagc
    55381 aatactgaca atgccttttt cagctaccat ctcaaggatg atttggcgac gctctacggg
    55441 tatcaacttt tgctccttcc tttgtcctgc tgacattcta cgctatttgc ctgcgaaacg
    55501 tgcgcggcgc aactaacgct tagttcacat aaaataacac acaatgttaa tttatgtgaa
    55561 tcggctcacc atatcgttat cttccagcgc ttatattcac aatatcaaac aaaatatcac
    55621 ttaaattaac aaggagagca gatgaaaacg ggatctgagt ttcatgtcgg tatcgttggc
    55681 ttagggtcaa tgggaatggg agcagcactg tcatgtgtcc gcgcaggtct ttctacctgg
    55741 ggcgcagacc tgaacagcaa tgcctgcgct acgttgaaag aggcaggtgc ttgcggggtt
    55801 tctgataacg ccgcgacgtt tgccgaaaaa ctggacgctc tgctggtgct ggtggtcaat
    55861 gcggcccagg ttaaacaggt gctgtttggt gaaacaggcg ttgcacaaca tctgaaaccc
    55921 ggtacggcag taatggtttc ttccactatc gctagtgctg atgcgcaaga aattgctacc
    55981 gctctggctg gattcgatct ggaaatgctg gatgcgccag tttctggtga tgcagtaaaa
    56041 gccgctaacg gtgaaatgac tgtcatggcc tccggtagcg atattgcctt tgaacgactg
    56101 gcacccgtgc tggaagccgt tgccggaaaa gtttatcgca taggtgcaga accgggacta
    56161 ggttcgaccg taaaaattat tcaccagttg ttagcgggcg tacatattgc tgccggagcc
    56221 gaagcgatgg cacttgcagc ccgtgcgggg atcccgctgg atgtgatgta tgacgtcgtg
    56281 accaatgccg ccggaaattc ctggatgttc gaaaaccgga tgcgtcatgt ggtggatggc
    56341 gattacaccc cgcattcagc cgtcgatatt tttgttaagg atcttggtct ggttgccgat
    56401 acagccaaag ccctgcactt cccgctgcca ttggcctcaa cagcattgaa tatgttcacc
    56461 agcgccagta acgcaggtta cgggaaagaa gacgatagcg cagttatcaa gattttctct
    56521 ggcatcactc taccgggagc gaaatcatga tcaagattgg cgttatcgcc gatgatttta
    56581 ccggcgcgac ggatatcgcc agttttctgg tggaaaacgg tctaccaacg gtacaaatta
    56641 acggtgttcc aacaggtaaa atgccggaag caatcgacgc actggtgatc agcctgaaaa
    56701 cgcgctcctg tccggtggtt gaagccacac agcaatcgct ggcggctctg agctggttgc
    56761 aacagcaagg ttgcaaacag atctatttca aatactgctc tactttcgac agtacggcga
    56821 aaggtaatat cggcccggtt accgatgcat taatggatgc tctcgacacg ccgtttacgg
    56881 tcttctctcc ggccctgtcg gtcaacggac gtacggttta tcaggggtat ttgttcgtaa
    56941 tgaatcaact gctggccgaa tccgggatgc gccatcaccc ggtaaatccc atgaccgaca
    57001 gctatcttcc ccgtctggtt gaagcgcaat ccacagggcg ctgcggcgtc gtttcggcac
    57061 atgttttcga acaaggtgtg gatgccgttc gtcaagagct ggctcgctta cagcaagagg
    57121 gctaccgcta cgcggtgctt gatgcgctga ccgaacacca tctggaaatt cagggagaag
    57181 ccttgcgcga tgccccactg gtaacgggcg gttctggtct ggcgattggc ctggcccggc
    57241 agtgggcgca agaaaacggt aaccaggctc gcgaagcagg gcatccgctc gctgggcgcg
    57301 gcgtagtgct ctccggttca tgctctcaaa tgaccaaccg ccaggtggca cattaccgtc
    57361 aaattgcacc agcccgtgaa gttgatgtgg cacgctgcct ctcaaccgaa actctggccg
    57421 cttatgcaca cgaactggca gagtgggttc tgggccagga aagtgtactt gctccactgg
    57481 tttttgccac cgccagcact gacgcattgg cagcaattca acagcaatac ggtgcacaaa
    57541 aagccagtca ggcagtagaa actctgtttt ctcaactagc ggcgcggtta gcagcggaag
    57601 gcgtgacacg ctttattgtc gcaggcggtg agacctccgg cgtagtcaca cagagcctgg
    57661 gcataaaagg gtttcatatt ggcccaacca tttcccccgg cgtgccgtgg gtaaacgcac
    57721 tggataagcc tgtctcactc gcccttaaat ctggcaactt cggtgatgaa gccttttttt
    57781 cacgagccca aagagagttt ttatcatgag cgatttcgca aaagtagagc agtctttgcg
    57841 agaggagatg acgcggattg ccagttcatt ctttcagcgc ggctatgcaa ccggttcggc
    57901 tggcaatctg tcgctgcttt tacctgacgg gaatttactg gcgacaccga caggttcatg
    57961 cctgggcaat ctcgatccgc agcggctttc caaagtcgcc gcggatggcg aatggttaag
    58021 tggtgacaaa ccctcgaaag aggtgctctt tcatctggcg ctgtatcgca acaatccgcg
    58081 ctgtaaagcg gtggtgcatt tgcacagcac atggtcgacg gcgctttcct gcctgcaagg
    58141 gctggacagc agcaacgtta ttcgtccgtt cacaccatac gtggtgatgc ggatgggaaa
    58201 tgtcccgctg gtgccctatt accgaccggg cgataaacgc atcgcacagg atctggcgga
    58261 actggcagca gacaatcagg cttttttact ggcaaatcat ggcccagtgg tttgcggtga
    58321 aagcctgcaa gaagccgcca acaatatgga agagctggag gaaacggcaa agctgatttt
    58381 tattctcggt gaccgcccga tccgttatct gaccgcaggt gaaattgcgg aattaaggag
    58441 ttaatgcaat gcctcgtttt gcagctaatt tatccatgat gttcaccgaa gtgcctttta
    58501 ttgaacgctt cgccgcagcg cgaaaagccg ggttcgatgc tatggaattt ctgtttccct
    58561 atgactactc caccctgcaa atccaaaagc aactggagca aaaccatctg acactggcgc
    58621 tgttcaatac cgctcccgga gatattaatg cgggggaatg gggattatcc gcccttcccg
    58681 gacgtgagca cgaagcacac gcagacatcg acctggcact ggaatatgca ttggcgctca
    58741 attgtgaaca agtccatgtg atggcaggcg tcgtgcccgc tggcgaagat gctgaacggt
    58801 accgggcagt atttatcgat aatctccgct acgctgccga ccgctttgcg ccacacggca
    58861 agcgaatatt agttgaagca ctcagccccg acgttaagcc tcattatctc ttctccagcc
    58921 agtatcaggc actggctatt gttgaagagg ttgcgcgaga taacgtgttt attcaactag
    58981 atacttttca tgcgcaaaaa gtagatggca acctgacgca tttaatccgc gactacgctg
    59041 ggaaatatgc gcacgtacaa attgccggac tacctgatcg acatgaaccg gacgatggag
    59101 aaatcaacta tccgtggctg ttccgcctgt tcgatgaggt gggatatcag ggctggatcg
    59161 gttgtgaata taaacctcgt ggcctcaccg aagaagggct tggctggttt gacgcctggc
    59221 gctaattcgt taaatcccta attacaacgt acccatacat ccccccatct acggatgggg
    59281 taggttaact ataactttca gacagggttt cccatgtcca caattacatt gttatgcatt
    59341 gcgttagctg gcgtaatcat gctgttgctg ctggtcatca aggcaaaggt acaaccattc
    59401 gttgctctgc tcctcgtcag cctgttagtc gcacttgcgg cgggtatacc ggcgggcgaa
    59461 gtgggtaaag tgatgatcgc cgggatgggc ggtgtgcttg gttccgtcac tattattatt
    59521 ggtctgggcg ctatgctggg gcgtatgatc gaacactctg gtggtgcaga gtcactggct
    59581 aattatttca gtcgcaagtt aggtgacaaa cgaactatcg ctgcgctgac tctggcagcg
    59641 ttcttcctcg gtattcccgt cttctttgat gtcagcttta ttattcttgc gccaatcatt
    59701 tacggttttg ccaaggttgc caaaatatcg ccactcaaat ttggcctgcc tgtcgctgga
    59761 atcatgctaa ctgttcatgt ggcagtaccg ccgcatccag gccctgtcgc cacagcgggg
    59821 ttactccacg cagacatcgg ctggctaacc atcatcggta ttgcgatttc tattcccgta
    59881 gggattgttg gctactttgc agcgaaaata atcaataagc gccaatatgc gatgtcagta
    59941 gaagtactgg aacagatgca actggctccg gccagtgagg aaggcgcgac aaaattaagc
    60001 gataaaataa atccaccggg cgtcgcgctg gtcacctcgc taattgttat tcctatcgcg
    60061 attatcatga cgggtacggt ttccgcaaca ctgatgccgc cttcgcatcc cctgcttggt
    60121 acgctacagc tgatcggctc accaatggta gctctaatga ttgcgctggt gctggcattc
    60181 tggttattgg ctttacgtcg cggctggagc ttacaacaca ccagcgacat tatgggctca
    60241 gcccttccca ctgcggcggt agtgattttg gttactggtg ctggaggggt atttggcaaa
    60301 gtgctggtgg aatcgggcgt cggcaaagcc cttgccaata tgctacaaat gattgacctg
    60361 cctctgttac cagccgcatt tattatttca ctggctctgc gtgcatcgca ggggtcagca
    60421 accgtagcaa tcctgacaac cggcgggtta ctctcagaag cggtgatggg attgaatccg
    60481 attcagtgcg tattggtgac gctggcagcc tgctttggtg ggcttggcgc gtcacatatt
    60541 aatgactcag ggttctggat tgtgaccaaa tatctggggt tgtcggtagc agacggtctg
    60601 aaaacctgga cagtgttaac gaccattctc ggttttaccg gattcttaat tacctggtgc
    60661 gtatgggcgg taatttgacc ttaataaaaa ggtccgatgg gcatcggacc ttttattgtg
    60721 cacagaaaag gccagcctcg cttgagactg gcctttctga cagatgctta cttactcgcg
    60781 gaacagcgct tcgatattca gcccctgcgt ttgcaggatt tcacgcaaac ggcgcaggcc
    60841 ttcaacctga atctggcgaa cacgttcacg ggtgaggcca atttcacgac ctacatcttc
    60901 cagtgttgcc gcttcgtacc ccagcaaacc gaatcgacgt gccagcactt cacgctgttt
    60961 ggcgttcagc tcgaacagcc atttgacgat gctctgcttc atatcgtcat cttgcgtggt
    61021 atcttccgga ccgttctctt tttcatcggc caggatgtcc agcaacgctt tttcggaatc
    61081 accacccagc ggggtgtcta ccgaggtaat gcgctcgtta agacgaagca tacggctgac
    61141 gtcatcaact ggcttatcca gttgctctgc gatctcttcc gcacttggtt catggtccag
    61201 cttatgggac aactcacgtg cggttcgcag gtaaacgttc agctccttta cgatgtgaat
    61261 cggcaaacga atagtacggg tttggttcat aatcgcccgt tcaatcgtct ggcgaatcca
    61321 ccaggttgcg tatgttgaga agcggaaacc acgttccggg tcaaacttct ctaccgcgcg
    61381 gatcagcccc aggttgccct cttcgataag gtccagcaac gccagaccac gattgccata
    61441 acggcgggca atttttacca ccagacgcaa gttactctcg atcatccggc ggcgagaggc
    61501 gacatctcca cgcagtgcgc gacgcgcaaa ataaacttct tcttcggccg ttaacagtgg
    61561 tgaataacca atctcaccaa ggtaaagctg agtcgcgtcc aacactcgct gtgtggctcc
    61621 ctgcgataac agttcctctt cggccaaatc gttatcactg ggttcctctt ctactaaggc
    61681 cttttcgtca aaacctcaac tccgttctca tcaaattccg catcttcatt taaatcatga
    61741 actttcagcg tattctgact cataaggtgg ctcctacccg tgatcccttg acggaacatt
    61801 caagcaaaag cctggttccg ccgatttatc gctgcggcaa ataacgcagc gggtttacgg
    61861 atttcccctt gtaacgaatt tcaaaatgca agcgtgttga actggttccg gtgctaccca
    61921 tggttgctat tttttgcccc gccttcactt cttgttgttc ccggaccagc attgtgtcgt
    61981 tatgggcgta ggcactcagg taatcatcat tatgtttgat gataatcaga ttaccgtagc
    62041 cgcgcagcgc gttaccggca taaacaacgc ggccatctgc ggtcgcgata attgcctgtc
    62101 ctttgctgcc tgcgatatca atccccttgt tgcccccctc agaagcgcca aaggtttcga
    62161 tcactttgcc ctcagtcggc cagcgccagg tggagatagg cgtactggtt gatgtactgc
    62221 tgacagttgg ctcggttgtg cttgctgttg gtaccgttac aggcgctgtg accgtggtcg
    62281 cagctggctt gttgttcggc aacattttgt tagcactctg ttcacccgaa gattcagaat
    62341 acgtaattgt cggttgcgac gcaacagcaa cggtggaatt ttgtgcaggc ttgatcacaa
    62401 ctccttgctc tgctgcgtcg gcctgggtaa tggcatttcc gccagtgatt ggcgtaccgg
    62461 aagcattacc cacctgcaag gtctgaccaa cgttcagcgc gtatggtgcc tgaatattgt
    62521 tgcgctgagc aaggtcacgg aaatcgttgc cagtaatcca ggcgatatag aaaagtgtgt
    62581 cgcctttttt cacggtatag gtactgccgc tataactgcc tttcggaatg ttcccatact
    62641 gacggttata gacgatgcgt ccgttttcca tctgtaccgg ctgctgagct actggctgca
    62701 ctggctggat ttgcggttgc tgggctgtag acgtcgtccc cattttcggc ggcggcgtaa
    62761 tcaacatacc agaattggta tttgcaggcg cattgccatt aacggagctg accggtgccg
    62821 gtggatttga agtgtcagaa cagcctgcca gccatagcga aaccagtgac aaagccgcaa
    62881 tgcggcgaac ggtgaatttt gggcttcccg cgctcattta tcccccagga aaaattggtt
    62941 aataaccagt gacataatta ccgtgcaagg caccctactg aacactggaa aagatgttca
    63001 cgatacgctg acctgcggca aaataaccag gaaaaatcca ggtatttcct cacgttttaa
    63061 gccagctccc ccttcactaa agggacaaag cgcacggcct ccacggtatc gataataaat
    63121 tcgcctcccc gacgacgcac ccgtttcaaa tactggtgct cctcccctac gggtaagacg
    63181 agaatcccgc cttcgtccag ctgcgtcatt agcgcagttg gaatttccgg cggtgccgcc
    63241 gtaacaatga tagcgtcaaa cggcgcgcgt gcctgccaac cttgccatcc atcgccatga
    63301 cgggttgaaa cattatgtaa atcaagattt ttcaggcggc gacgcgcctg ccactgcaaa
    63361 cctttaatcc gttcgaccga gcaaacatgc tggacaagat gcgccaggat tgccgtttga
    63421 tatcccgaac cggtgccaat ttccagcacc cgcgactgcg gcgtcagctc gagtaattcg
    63481 gtcattcgcg ccaccatata cggctgcgaa attgtctgcc cctgacctat cggcaaggcg
    63541 atattgtccc aggctttttg ttcaaacgct tcatcaacga atttttcacg cggcacggca
    63601 gcaagtgcat tcagcacctg ctcatcctga ataccttgcg cacgtaattg atccagaagt
    63661 gcttgtacgc gtctgcttac cattgcgtgc caactcccac gctgtttaac cagtctgaaa
    63721 ccacatcttg cgcgctatgc gcagttaaat ccacatgcag cggcgtgatg gagacatagc
    63781 cctcatctac cgcagcaaaa tcggtccccg gaccggcatc acatttaccg cccggcgggc
    63841 caatccagta cagcgtattg ccgcgcggat cttgctgcgg gatcacctga tctgccggat
    63901 gtcgtgtacc gcagcgcgtc acgcgaatac ctttgatttg atccaagggt aaatccggaa
    63961 cgttaatatt aagaatacgt ccggtgcgca gcggctcttt acacagtgcg cgcaaaattg
    64021 aacaggttac cgccgcggca gtgtcgtaat gtttatgccc gtcaagcgag acggccagcg
    64081 ccggaaaacc taaatgacgg ccttccatcg cggcggctac cgtaccggaa taaataacgt
    64141 catcccccag attcggcccg gcgttaatgc cggacacaac aatgtccggg cgcggacgca
    64201 tcagagcatt cacgccaaga tagacgcaat cggtcggggt tcccatttgc acagcaatat
    64261 caccattttc aaaggtaaac gtgcgcaggg aggattccag tgtcagagaa tttgaagcgc
    64321 cgctgcggtt acgatcgggg gcgaccacct gaacgtcagc aaactcacgc aaggctttcg
    64381 ccagcgtttg tataccgggt gcatgtaccc cgtcatcatt actcagcaat atgcgcataa
    64441 tcacctgttg tgttgataag ttccctgaca acgctggttg caaaactacc cgccggaagc
    64501 cagaaacgga tctctacggt gacgtcatcc caccaattcc agcttaattg ttgcggatac
    64561 agcagcatcg ctctgcgcgc ggcttcaact ttttcgcgca ccagtaaagc ttgtaattca
    64621 gtttctgcgg cgacagctgc ttgttcgaat gccagcgctt tacgctgagt tccccattcg
    64681 ccactgcccg gcaatgcggc ggttatcatc agctctttat cgttgacgcg atgctgtaat
    64741 tccgccagtt cttcggtggt tgctacaaac cagctaccac gtccggctaa ttgtagcgca
    64801 tcgccgtcaa caacttgatt aacgtctgct tttttgaggc gctcagcaac aatctgatta
    64861 aacaacgcac tgcgggctgc cgacaaccaa aaactccgtt tattgcgatc gcgcaccgga
    64921 gtattggttt gcgcccagcg cagcgcgccc tgcaagttgc taccgccaat cccaaaacgt
    64981 tgggcaccga agtagttcgg tacacctttt acgcaaatat cgatcagacg ttgttcaacg
    65041 tcatcgcgat tgctcacttc gcgcagaacc agggtaaagg cgttaccttt cagcgcgcct
    65101 aaacgcagct tgcgcttgtg ccgcgcatac tccagcacct ggcagccttc cagttgaaag
    65161 gcgctcagat cgggcatttc cttgcctggc acgcgagcgc ataaccactg ttccgtaaca
    65221 gcatgtttgt ctttttgccc agcgaagctg acttcacggg catgaatttt caggaatttc
    65281 gccagtgcat ccgccacaaa acgggtattg cagccgtttt tgaggattct aaccagaata
    65341 tgctcacctt caccatcagg ctcaaagccc aaatcttcca ccaccacaaa gtcttccgga
    65401 ttggctttca gcagcccggt gccttgcggt ttaccgtgga ggtaagtgag attatcaaac
    65461 tcaatcattt tgttgcctta atgagtagcg ccaccgcttc acaggcaatc ccttccccac
    65521 gtccggtaaa tccaagtttt tccgtagtag tggctttcac gttaacatca tccatatggc
    65581 agccgagatc ttcggcaata aacacgcgca tttgtggaat gtgcggcaac atcttcggtg
    65641 cctgagcgat gatagtgaca tcgacgttgc ccagggtata acccttcgcc tgaatacgac
    65701 gccaggcttc gcgtagcagc tcgcggctgt cggcaccttt aaatgccgga tcggtatccg
    65761 ggaacagctt gccgatatcc cccagcgccg ccgcgccaag caatgcatcg gtcaacgcat
    65821 ggagcgccac gtcgccatca gaatgcgcca gcaatccttt ttcgtaagga atgcgtacgc
    65881 caccaatgat aattgggcct tcaccgccaa aggcatgtac gtcaaaaccg tgtccaattc
    65941 gcattatgta ttctcctgat ggatggttcg ggtgaggtaa aactcggcca gtgccaaatc
    66001 ttccgggcgc gtgactttaa tgttatccgc acggccttcg accaactgag gatggaatcc
    66061 gcaatattcc agcgccgagg cttcgtcggt aatagtcgcg ccttcattta gagcgcgcgt
    66121 cagacagtca tgtaacagct cacgagggaa aaattgcggc gtcagcgcgt gccataagcc
    66181 gttgcgatca acggtatgag caatggcatt tttgcccggt tcggcacgtt tcatcgtatc
    66241 gcgcactggt gcggctagga tccctcccgt gcggctggtt tcgctcaacg ccaacaatcg
    66301 cgcgaggtca tcctgatgca gacaaggacg agcggcgtca tgcaccaata cccactgcgc
    66361 gtcgccagcg gctttcaaac ctgccagcac ggaatcggca cgctcatcac cgccatctac
    66421 aacggtgatt tgcggatgat tcgccagagg aagttgtgca aaacggctat cgccaggact
    66481 tatggcaatg acgacacgtt tcacccgggg atgcgccagc agcgcatgca ccgagtgttc
    66541 aagaatggtt tgattaccga ttgagagata ttgcttagga cattccgttt gcattcgacg
    66601 gccaaatccg gccgccggaa ccacggcgca aacatccaaa tgagtggttg ccatgttaat
    66661 tcccgggctg atttatcgat tgttttgccc cgcagactgt gcgcgcttcg acgcgtcagg
    66721 caccagacga taaaaagttt cgcccggcct ggtcatgctg agttcattac gcgcacgctc
    66781 ttcgagcgcc tcctggccgc cattgagatc gtcaatttcg gcaaaaagtt gatcgtttcg
    66841 cgctttaagt ttcgcgtttg tagcttgctg tgccgccaca tcatcattga cgcgggtata
    66901 gtcatgtata ccgttcttac cgaaccacag cgaatactgt agccagacca gaatagccag
    66961 caacagcagc gttagtttac ccatcctgcc ccctgaaaaa cggcatcatc atcccatgca
    67021 tccgaagacg actctacatc ctctgttggg gataccgcga caacgcgggc aaatgtacca
    67081 catttgtcca ttgttacgta tacctagggc gtgcagaaca taatctcatt attagttacg
    67141 gtttgaatta tgaacagagg agacaagaaa gtacaaatta gcccagtagc cacataaaca
    67201 gtgcgccaaa cataatgcct actgtcacca gggtgaaaac aatactgtag cgtagctttc
    67261 cgtccatcaa tgaatgcagc gcaatcccca ccactaccgc gacaggcatc agtgccagaa
    67321 agaaaggcca ggtgtagata aagaagaaca gcgtgttaga gccataaatc aacatcggca
    67381 tcgccagcgc aaataaccag gagataaaac cgaccacggc accaggtagt gaccatgtgg
    67441 tttcttcatc ctcagtaagg ctgtcgttat ttgttagtgt aatgttatgg ctattacgca
    67501 tatttgatcc tgttactttg acgaaccggg catggaaacc cggtggtgtc tcaggatctg
    67561 ataatatcgt tctgtctcaa cagatctaat aattgctgta ccaaatttgt tactaattgt
    67621 tcaccattga gatgaatttc tgccgattca ggcgcttcgt aaacggaatc tattcccgta
    67681 aagttgcgca gttcaccggc acgcgctttc ttatataagc ctttgggatc gcgggcttcg
    67741 caaatcgcca gcggcgtatc gacaaacact tcgataaagc gcccttctcc tacgcgttcg
    67801 cgaaccatct ggcgttcggc gcggtgtggc gagataaatg cggtcagcac caccagtccg
    67861 gcttcaacca tcaaattcgc cacttcaccg acgcgacgga tattctcttt acgatcggca
    67921 tcgctaaaac cgagatcgct gcataatccg tggcgaacat tgtcgccatc cagcagatac
    67981 gtactgacgc cgagtttatg taacgcctcc tccagcgccc cggcgaccgt tgatttaccg
    68041 gacccagaga ggccggtaaa ccacagcact acaccacgat gaccgtggtg tagctcgcgt
    68101 tgttgcacag tgaccggatg gctatgccag acgacgtttt cgtcatgcag cgccattatt
    68161 tatcccccag caaatcgcgc gcgccccagt gcggaaagtg gcgacgaacc agggcattca
    68221 attccagttc gaatgcactg aattcagatg acgcaacggc ggcctcgttt ttcggctcat
    68281 gcaccatacc ggcaccaaca gtcacgttgc tcaggcgatc gataaaaatc agcccacccg
    68341 tcaccggatt ttgttgataa cgatctaaca ccagcggctc gtcaaaagtg agatccacga
    68401 ggccgatccc attcagtggc aggttttcaa cttcacgctg ggtaaggtta ttaatatcaa
    68461 ccggatagcg aatgccatca acacgcgcgc gcgtcttctt accggcaatt ttgatgtcgt
    68521 aactctggcc cggggaaagc ggctgttccg ccatccatac cacatccacc gacgcgctcg
    68581 gcaccgccgg taacgcttcg tctgccgcca gcagcagatc gccacggctg atgtcgatct
    68641 catccgtcag caccagggtg atcgcttctc cggcaaaggc ttcttcgcga tcaccatcaa
    68701 aagtcacgat ccgcgcgacg tttgattcca caccagaggg cagcgctttg acacgttgcc
    68761 cgacttccac gcgaccggat gccagcgttc cggcgtagcc acgaaaatcg agattcgggc
    68821 gattaacgta ctgcaccggg aagcgcattg gctgggcatc caccactcgc tggatctcca
    68881 cggtttccag cacttcgagc agtgtcggac cgctgtacca cgacatactt tcactttgcg
    68941 atgccacgtt gtcgccttcc agtgcagaga gcggcacaaa gcggatatcc agattacccg
    69001 gcagctgccc ggcaaaggtc aaataatctt cacgaatatg ggtgaacgtc tcttcactgt
    69061 aatccaccag atccattttg ttgatcgcca cgaccagatg tttgatcccc aacagtgtgg
    69121 agataaaact gtgacgacgg gtttgatcga gcacgccttt acgggcatcg atcagtaaga
    69181 tcgccagttc acatgtcgat gcgccagttg ccatattgcg agtgtactgc tcgtgccctg
    69241 gggtgtcggc gataataaat ttacgcttct cggtagagaa ataacggtaa gccacgtcaa
    69301 tggtgatgcc ctgttcgcgc tcagcttgca ggccgtccac cagcagtgcc agatccagct
    69361 tttcgccctg ggtgccgtga cgcttactgt cgttatgcag cgatgagagc tgatcttcgt
    69421 agatttggcg ggtatcatgc agcaggcgac caatcagggt acttttgccg tcatcgacgc
    69481 taccacaggt cagaaaacgc agcaggcttt tatgttgttg cgcaatcatc caggcttcga
    69541 cgccgccttc attggcgatt tgttgtgcaa gtgcggtgtt catcttaaaa atacccctga
    69601 cgttttttca gctccataga ccccgcctgg tcgcggtcaa tcacgcggcc ctgacgttca
    69661 ctggtggtag aaaccagcat ctcttcgatg atctccggca gtgtttgtgc atttgactcc
    69721 accgcaccgg tcagcggcca gcagcccagc gtacggaaac gcaccatccg ttttttaatc
    69781 acttcgcccg gttgcaggtc gatacggttg tcatcaatca tcatcaacat accgtcgcgt
    69841 tccagaaccg gacgttccgc agcgagatac agtggcacaa tgtcgatatt ttccagccag
    69901 atgtattgcc agatatcctg ctcggtccag ttagagagcg ggaagacgcg gatgctttca
    69961 cctttgttaa tttgcccgtt gtagttgtgc cacagctccg ggcgctgatt tttcggatcc
    70021 cagcgatgga agcggtcacg gaaagagtag attcgctctt tagcgcggga tttctcttca
    70081 tcacggcgcg caccaccgaa ggcggcatca aaaccgtatt tgttcagcgc ctgtttcagg
    70141 ccttcagttt tcataatatc ggtatgtttc gcgctgccgt gtacgaatgg attaatcccc
    70201 atcgccacgc cttccgggtt tttatgcacc agcagctcgc agccgtaggc tttagcagta
    70261 cgatcgcgga actcatacat ctcgcggaat ttccagccgg tatcgacatg cagcaacggg
    70321 aaaggcagcg tacctggata aaacgccttg cgcgccagat gcagcatgac gctggaatct
    70381 ttaccgatag agtagagcat caccggattt gagaattctg ccgccacctc gcgaataatg
    70441 tggatgcttt ccgcctccag ttgccgcagg tgagtaagtc gtttttgagc cataaccgtt
    70501 cctttgcaat accgctattt tcttgccatc agatgtttcg actataggga gcgtaagaga
    70561 acgaatgaaa ttaccaatta gaatgagtag ttccttaacg gaataacgat ttggcaaagc
    70621 taatatcaaa aagtgcttaa ggcaccggat ttcgggcgtt taggaagatt tgaaattgtt
    70681 ttagcgcagc ggcagtttca tactatggcg gtaaaaaaat ttgcatggta tttaaggact
    70741 cactatgttt tccgcattgc gccaccgtac cgctgccctg gcgctcggcg tatgctttat
    70801 tctccccgta cacgcctcgt cacctaaacc tggcgatttt gctaatactc aggcacgaca
    70861 tattgctact ttctttccgg gacgcatgac cggaactcct gcagaaatgt tatctgccga
    70921 ttatattcgc caacagtttc agcaaatggg ttatcgcagt gatattcgga catttaatag
    70981 tcggtatatt tataccgccc gcgataatcg taagagctgg cataacgtga cgggaagtac
    71041 ggtgattgcc gctcatgaag gcaaagcgcc gcagcagatc atcattatgg cgcatctgga
    71101 tacttacgcc ccgctgagcg atgctgacgc cgatgccaat ctcggcgggc tgacgttaca
    71161 aggaatggat gataacgccg caggtttagg tgtcatgctg gaattggcag aacgcctgaa
    71221 aaatacgcct accgagtatg gtattcgatt tgtggcgacc agcggcgaag aggaagggaa
    71281 attaggcgct gagaatttac tcaagcggat gagtgacacc gaaaagaaaa atacgctgct
    71341 ggtgattaat ctcgataact taattgttgg cgataaattg tatttcaaca gcggtgtaaa
    71401 aacccctgaa gcagtaagga aattaacgcg cgacagggcg ctggcaattg cgcgcagtca
    71461 cggaatagcc gcaacgacca atccggggtt gaataaaaat tatccgaaag gcactgggtg
    71521 ttgtaatgac gcagaaatat tcgacaaagc gggcattgct gtactttcgg tggaagcgac
    71581 taactggaat cttgggaata aggatggtta tcagcaacgc gcaaaaacag ccgcattccc
    71641 tgcgggaaat agctggcatg acgtaagact ggataatcaa cagcatattg ataaggcact
    71701 tcctggaaga atagaacgtc gctgccgtga cgttatgcgg ataatgctac cgttggtgaa
    71761 ggagctggcg aaggcgtctt gatgggtttg aaaatgggag ctgggagttc taccgcaggg
    71821 gcggggaatt ctaagtgata tccattatcg catccagtgc gcccggttta tccccgctgg
    71881 cgcggggaac acactaagca tacataactg tttttaaaca aatttattcc gcatcaacaa
    71941 tctaccaact aaattaaaac atttccttat ttttaaagaa cggataactt attgattatc
    72001 aacaggaaga aaagaaacca aacgtaaccc atccaaatcc accggaatac gtctgttttc
    72061 tccccaggtc tgaaattcaa aacccgactc ggtattggtc gcccaggcca tcaccacatt
    72121 tccgcaacca gccagttggg taatttgctg ccagatcatc tcccgaatac gttttgatgt
    72181 atcaccaaca tacacaccgg cacgcacttc cagtagccag attgcgagcc gtccacgtaa
    72241 gcgtggcggg acattttctg taacaaccac gaccatgctc atcagccgcg tcctcgatga
    72301 ccgctatcgc ccaacgtttc aggttcgggg atggctggcg gtaacatatc cggcgcaggt
    72361 tgtggcggtt caatttcacc tgcggcaagg acttcctcaa ttaacggtat taatttgccc
    72421 gttaacttag tgctacggaa aatatcacga caggctaatc tgacttcttt atcaggttct
    72481 gcgggttgcc tcgccgctat ttcaaatgcc tttggtacaa ccgaatcaaa tttaatgata
    72541 tcggctatgt cataaacaaa tgaaagcggt ttgccactat ggataaaccc aatagcgggc
    72601 gcatatcccg cggctaatac tgccgcttca gatataccgt acagacatga tgtagcagca
    72661 ctgatgcagc gattcacaac atcgcctttt tcccagtctt taggatcgta tttgcgacca
    72721 ttccatttca caccatattg tttcgccagt aatgcatacg tctggcgaac gcgagatccc
    72781 tcaattccac gtagctgctc cactgaacgg cgagctggcg gtggctcacg aaaacgtaat
    72841 tcatacattt tgcgcaccac cttcagacgt agatcttccg ttaaagccag ctttgcctgg
    72901 tagagtaact tatcagcacg cgccccaccg ggttgtccgg aagagtagac gcgaacaccc
    72961 gcttcaccga cccagacctg tagcgtcccc accgtggcgg ccagatgcac cgccgcgtgg
    73021 gaaactctcg ttcccggttc gagcataatg caggcgaccg atcccaccgg aatgtgcgtg
    73081 cggatcccgg ttttatcgat cagcacgaaa gcgccgtcca gtacgtcgat ttgcccgtac
    73141 tggaggaaga tcatagaggt gcgatctttt aacgggatcg ggctcagcgg tacaaacgtc
    73201 acgcctctgc tccgggtttg atcagcatca gaccacagcc gaacgcgcgg cttttgccat
    73261 acccctgact gagacgttgc agaaataacc cgggatcggt gaccgtaagc atccccgtat
    73321 aatccacgct actgaactgg atcagttgcc gggagttttc ccgccgcagt tgctgttgtc
    73381 ggtaggcatc aaccgagata tccagcagtg taaaaccact tctctccccc tgcgctgcca
    73441 gccagtccag cgccgcctgt tgttgatgca accagacatc acttccttcc gcctgccccc
    73501 tcacctgccg tttcgcctcc atcagcagat cgtggcgctt gcccgcttta cagattgttg
    73561 gattcgcccg caggttgaaa caaagttgtt gtccggtaca cagctcgggc gcaaatgacc
    73621 ggcattctat ggtgaacgta tcactttccg ccgggcgttc ctgcgacagt acaaaaaagc
    73681 gaaacgcgcc ctggagttct tcccgacgat aaagaaattg cctttctttg ccgctaggga
    73741 agagatccca cagccactga tgcatcacat attcaccgcg atccaccaga tgcagcaact
    73801 gcgcaggcga aagctggccg gtatgtaagg ttattcttga gaggtacatg gttcctcctt
    73861 gctgagccac ggcccctgat tgacggtgcg ttccccaaac agccactgct gacgatttaa
    73921 aggaacatcc cggcggcgta atattttgct cgcgaccagg ccgtcgtgtt tcccttccca
    73981 ccagcattca tcctgaagtt tcgggagtga aactttcagt ttatggaaat gatcctgata
    74041 ctgttggtat gcattacata aggcatcaca cgcgttgcct tcgagcagta acggcgcaag
    74101 aggtaatgcc agcggatgac tttttcgccc cagataaagc ggaaaaactg gatggcgtaa
    74161 accgtcctgc aactgttcga ggctgtaagg cgcatcggct gttgttgcca ccgccaccat
    74221 ccaccaggca tcggtgtagt agtcgcgccg ggagataatc gcgctcaaaa gctcagggtc
    74281 gctcaactct tcgcgacggc tgaaataacg tgctttacgc acctcttttg gcatctggac
    74341 cgtgtgataa tcccgtgccc agcgcgggtt acggctggcg caaaccacca gtgaatagtg
    74401 gcgattaaac gcgtttaagc gttcggtatc atcacgccgg atccctaccc cggcagccag
    74461 cagccccagc aatgctgaga gcgaaggcag ttcatgggta tgacgcactt cgccgggggc
    74521 atcgacgccc caggatgcca tcggcccatg aagctgaaaa atcagatatt ggctcataag
    74581 ccgcccctta cgcgcagata aagtccagca cgtccttcat gcttccctgt ttgttcatca
    74641 cgtcaaaact tgcgtaatcg gtcttctgtt cgtagaccgt attcatattt tcgcgaagag
    74701 ttgtaatacg ctgcaccgcc acctctaact gacgggtgcc attaatgggt tcatagaaag
    74761 ctgccgccag agaacgcggt tgatcggtgc ctttttctgc cagcgcccag gaggcataag
    74821 cccggctggc aaagctgttt tgtttaccgg ttggggagac tttaagcgcg gcttccgtaa
    74881 aggcgcgtat ggtctgatta gctaacgctt cgtcaccgcc gaggttttct accagcagat
    74941 ctttatcaat gcagataaga tataggtgta gaacagcgca gaaccgaatc cggtttcatc
    75001 tacatgaccg gcaccggcat cttcagaagc ctggcgtaaa tcatctacgg cggtgaaaaa
    75061 atcattttcg acaatcgttt cactgacacc aaacgcatgc gcgacctggc aggcggcttc
    75121 tacattaaac ccgggttttt tcgccagcat acgaccaaac atagcgatat ctaccgccat
    75181 acggtcttta cgtaacaaag cgagatcttt ctcttttggc gcgcgctttt cttctgccag
    75241 ttgatgggcc agcgctttta cggcgtcaaa ttctgccggg ctgatatgga cgagctgttc
    75301 agtttcggcg ctagtgagcg gatcttttgg ttttttgtcg tttttttgtt ttttgtcttt
    75361 tttggctttc ccaagataat cggctatctc tactgcccat tcgatggctt ttttatcttc
    75421 gattcctttc tcaatcagga tagttgccgc ctcacgcgca atacgcccgc tacgaacacc
    75481 aatatggccc gccagcgcct gttcaaaaag ttcagaagtg cgccaagcac gcttcagact
    75541 ttgcgaggaa acgcgcagac gcgttgctcc acccagaatc acagttttcg gagagccgga
    75601 atcatcacgg ttaagattgg cagcagggta agcggttaac aaatgaagct gaataaatgt
    75661 tgtcatgaga tagtccttta ttaattttgt tcgttatcgg cgtcgccagc ctggtaatat
    75721 tccagcgccc agcgcccagc gcccagcgcc cagcgcccag cgcccagcgg atacggataa
    75781 attctgttgg tcgctgctgg cggcggtgat gattgagcag gtcatcgctc tcctggcacc
    75841 agcggaagac cccctcttct agagagtcaa gattgacgga accgtttaat aatttgaccg
    75901 cacggcgtaa ctgccgcaat aaatcatccg gcgtttttac tgccaacaaa cgagtaaacc
    75961 gccccttttt cattaccgcc gccagttgcg cggcaaaagg ctgccgttcg tcaatagctt
    76021 taacattggc gctaactgct gctatcagcg ctagtgcggt gatacgccac tcgggttcat
    76081 cctgccactt tatttgtctg ttcttaagaa acaggcgaaa tccatccgtc agacaaacat
    76141 cattaaccgt cgtactacgc cgcagactgg cacgctcgcc gcgtttatcc tgcaactctt
    76201 catgccattt acgcagcgca actttatgct catcttttac aatactcatt cagcagcctc
    76261 ctgctttttc tccctggcgg cgttagcatt ttgcttctcc gctgatgttg taaaatattt
    76321 cttgcgtgcg gtcatgacgc gttccaaatc aacgggctca tatggattgg taaagacacg
    76381 atcgtcaaaa tcctgacgcg cgaataacca catttccttt tgccatttac tgagtaattc
    76441 gtccggatcc tgaccttctt caattttgcg cactaatctc aggaatcgat gctgagtttt
    76501 gttccagaag tcaatatcca caaaaccgaa atcaagcttt gtggttttct tctcagagaa
    76561 ccatgcttct ttcaacgctc ggtgtaacaa gcttagaatg tgtgatgccg cttgcgctgc
    76621 cagacgcaac ttaggtatta ggtcttcttt tttgtttaac aacagcggga aatggtgttc
    76681 ataccaacaa cgaaccttca tatcttcaaa atcaaaacca aatccccata agcccaccct
    76741 tgtctgcttt agattgctgg cattcaaaag tttcacgacc tgtgcgggga gttcagtatt
    76801 gttttttgag ttacctacct ctatgaggcc taaccagtcg cgccagatta aaccaccagg
    76861 ttgtggttta actgagtaaa aatctccacc ctctttaagc ggcagacggt aaggtgttag
    76921 aggatggcgc cacatgacgt attgaacacc atagtttttg agtgacatca agcccaaaag
    76981 agcatcgctc tgcctaccgc aaatgtcgca gttacctatt gaggttgtct taaaatcaat
    77041 acgtatacgt cgtggcattc cccagtaggc ctgaagttta ttgacttgtt catccgttac
    77101 cacagcaccg tccagttcgc tggtacgcgt cggtgcaagc caaggaaaga ccaggtcatc
    77161 aaaggttttt ggtaaaggta aatcggcttc atcttgcggc attacgttta gccacagctt
    77221 tcgccacaaa ggggtttgtt gattgccctg atactccagc aattctataa gtgtcgtcag
    77281 aggccctccg ccacgtagcc caggatagta accgcgtcca cctataggtg cattcaactg
    77341 gattgaaaaa agcgctaaag gcacacaatg caggcacaga tgctgagttg tgtctcgctt
    77401 aataaaatgg tctgtatttc gttcttttgt ttgttttcct ggtgcgtcag gaagaagcga
    77461 agcaataaaa gttgccttaa cttttaattc atcaaaatcc tgcataaatg aaggggaatc
    77521 tggcccaaac tgaaaagcat gttctaaaga cagcaatgct tcccttagct tttcagcttc
    77581 cagtccgtct tcccagatat catcccaact acgttgatct tttggcgcga agctggtttg
    77641 tagtagcccc agcaaaaact gccaggccgc cccctggaga tctgcccgcg gcgcagcgat
    77701 atcgacaaca ttttcatcag ccagatcgac tggtgccagt ttgcctgtcg ttccgtcttt
    77761 aaaacgaacg ggcaaccacg gggttgtcag aagtgaaaac gagttcatac gcatcctctc
    77821 gtaaaaaaga ccatcccagg tcggttgtcc atccttccat ccttttctgt atatcaacta
    77881 ttcagagagt cttgtcgcag acatctcaac caaccttgcc aatcaatccc tccctggccg
    77941 aatacccgca actttcgtca tcggtgacta aaatcacgtt tgccatttcc ggatcttgcc
    78001 gctgttcaac gcaccactgc ctgaacgcat ccccttccag taaagaaaac tcatcccgat
    78061 gttttttcca ccagcttcgg cgcactctga caacgctcat ttcccatgcg tgagcaccgg
    78121 tggcataagg cttcaccaca ccgtcaatac aggtagccag ccacagggaa acagactctt
    78181 cagccagacg tgtcgacagt ttttccggaa ggtaatcgtt gatattggcg gcatagccga
    78241 gcctgaagtt cagcacatac tttttagccc ttgcgcgatc acagtaatat ttgcccactt
    78301 gctcctgctc gctgcgggca aatccttccg gcattaccac gtcctcaccg taaactgatt
    78361 caataagaag ccgggctgcg tgcggcatct gaatagcgcc ttgctcacgc agcacacgct
    78421 gcgtcagcca gattcgccca tgatcgggat agacatatgc actgttacgc atggcactgc
    78481 cgaaccattc gtcaccagga gcgtcatccc agacgggggc cagaatcagc aattcagggg
    78541 gggaacgctc gtcttttccg tcacgcttta actgaccatt aatatcgcgg atatgccgct
    78601 gtaatcgccc cgctcgctgg attagcaaat caatgggggc caggtcggag atcatttcgt
    78661 ccaggtcaat atccacgctt tgttcaatta cttgtgtaca aacaatgact tgagacgctc
    78721 tctgtaaact acaatattta ccaaagcgtg ccagcgtttc cgtttcaatt cgctggcgat
    78781 cgctaaaagc aaagcggcta tgaaaaagtg aaaggctgga agcaggaatg acgccgcggg
    78841 caagcagctg acgatacacc tgaatagcgt catcaacaga attccgaatc caggcgatgc
    78901 atttcccctg acttaccgcc gattcgatac gcgcaataca ctcttgttca ctatggagcc
    78961 aacccacgct cacgctacgt tcaacttctt tgcgcgtcgc tacccggtgc gaatgtacat
    79021 cggttttcgt gacatgcgtc agccaggggt aatcatcttt tcccaggagt ggggcttctt
    79081 gctggccctc tgcaccacgc gcaaaggcgg cgacgagttt gtcgcgctgc tgttgagata
    79141 acgtagcaga aagcaaaata acgctgtttc cgccacgcgc ctgccgctcg atcagccctt
    79201 caagaatgca cgacatataa gcgtcacagg cgtggatctc atcagccagc aggattttgt
    79261 tactcagccc cagaagccgc agattattat gtttaaacgg catcactgcc atcatcgcct
    79321 gatccagggt gccgacgcca atttcagcca gcaacgcctt cttgttactg tcggcaaact
    79381 aggccgcaca accctggctg aaagcttgtt catccggttc ttctgacccg attaaatcac
    79441 cggaccagag tgattcatta aag
//
LOCUS       DAJVUY010000003        75807 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.003, whole genome shotgun sequence.
ACCESSION   DAJVUY010000003 DAJVUY010000000
VERSION     DAJVUY010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 75807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 75807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..75807
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.003"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            138..761
                     /gene="iprA"
                     /locus_tag="OQQ72_000178"
     CDS             138..761
                     /gene="iprA"
                     /locus_tag="OQQ72_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HCS2010039.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FFILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINCLPSEY"
     gene            complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ72_000179"
     CDS             complement(762..1919)
                     /gene="ampH"
                     /locus_tag="OQQ72_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine-
                     carboxypeptidase/endopeptidase AmpH"
                     /protein_id="HCS2010040.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ72_000180"
     CDS             2271..3491
                     /gene="sbmA"
                     /locus_tag="OQQ72_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HCS2010041.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ72_000181"
     CDS             3504..4598
                     /gene="yaiW"
                     /locus_tag="OQQ72_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HCS2010042.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(4657..4965)
                     /locus_tag="OQQ72_000182"
     CDS             complement(4657..4965)
                     /locus_tag="OQQ72_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiY family protein"
                     /protein_id="HCS2010043.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
                     "
     gene            5225..5437
                     /locus_tag="OQQ72_000183"
     CDS             5225..5437
                     /locus_tag="OQQ72_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HCS2010044.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ72_000184"
     CDS             complement(5461..6555)
                     /gene="ddlA"
                     /locus_tag="OQQ72_000184"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS2010045.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLRLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            6633..6790
                     /locus_tag="OQQ72_000185"
                     /pseudo
     CDS             6633..6790
                     /locus_tag="OQQ72_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ72_000186"
     CDS             7017..7277
                     /gene="iraP"
                     /locus_tag="OQQ72_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HCS2010046.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVEGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ72_000187"
     CDS             7378..8793
                     /gene="phoA"
                     /locus_tag="OQQ72_000187"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HCS2010047.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTLNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ72_000188"
     CDS             8912..9232
                     /gene="psiF"
                     /locus_tag="OQQ72_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HCS2010048.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ72_000189"
                     /gene_synonym="dgcC"
     CDS             9334..10449
                     /gene="adrA"
                     /locus_tag="OQQ72_000189"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HCS2010049.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL
                     KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL
                     TGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV
                     YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ
                     ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG
                     VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ72_000190"
     CDS             complement(10466..11275)
                     /gene="proC"
                     /locus_tag="OQQ72_000190"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HCS2010050.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            11395..11853
                     /locus_tag="OQQ72_000191"
     CDS             11395..11853
                     /locus_tag="OQQ72_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HCS2010051.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ72_000192"
     CDS             12036..12560
                     /gene="aroL"
                     /locus_tag="OQQ72_000192"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HCS2010052.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISEIRSALAQTINC"
     gene            12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ72_000193"
     CDS             12610..12801
                     /gene="yaiA"
                     /locus_tag="OQQ72_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HCS2010053.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            13059..13736
                     /locus_tag="OQQ72_000194"
     CDS             13059..13736
                     /locus_tag="OQQ72_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HCS2010054.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ72_000195"
     CDS             13808..14092
                     /gene="ppnP"
                     /locus_tag="OQQ72_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HCS2010055.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            14240..14581
                     /locus_tag="OQQ72_000196"
                     /pseudo
     CDS             14240..14581
                     /locus_tag="OQQ72_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            14578..14661
                     /locus_tag="OQQ72_000197"
     CDS             14578..14661
                     /locus_tag="OQQ72_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010056.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ72_000198"
     CDS             complement(14739..15650)
                     /gene="rdgC"
                     /locus_tag="OQQ72_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HCS2010057.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQNLIEGLGGEAQR"
     gene            15775..16683
                     /gene="mak"
                     /locus_tag="OQQ72_000199"
     CDS             15775..16683
                     /gene="mak"
                     /locus_tag="OQQ72_000199"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HCS2010058.1"
                     /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA
                     TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHISGNGTAGEWGHNPL
                     PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD
                     PVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVPQLIKQFVFGGE
                     CETPVRKAKHGDSSGVRGAAWLWPQE"
     gene            complement(16826..18010)
                     /gene="araJ"
                     /locus_tag="OQQ72_000200"
     CDS             complement(16826..18010)
                     /gene="araJ"
                     /locus_tag="OQQ72_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HCS2010059.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAW
                     FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV
                     LALLMFFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
                     LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
                     LG"
     gene            complement(18136..21279)
                     /gene="sbcC"
                     /locus_tag="OQQ72_000201"
     CDS             complement(18136..21279)
                     /gene="sbcC"
                     /locus_tag="OQQ72_000201"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HCS2010060.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVKAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHKRQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTTLQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
                     KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK
                     KINGLGYSKLESTFAVK"
     gene            complement(21276..22478)
                     /gene="sbcD"
                     /locus_tag="OQQ72_000202"
     CDS             complement(21276..22478)
                     /gene="sbcD"
                     /locus_tag="OQQ72_000202"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HCS2010061.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALAESLPVE
                     VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            22668..23357
                     /gene="phoB"
                     /locus_tag="OQQ72_000203"
     CDS             22668..23357
                     /gene="phoB"
                     /locus_tag="OQQ72_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HCS2010062.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            23415..24710
                     /gene="phoR"
                     /locus_tag="OQQ72_000204"
     CDS             23415..24710
                     /gene="phoR"
                     /locus_tag="OQQ72_000204"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HCS2010063.1"
                     /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            25117..26436
                     /gene="brnQ"
                     /locus_tag="OQQ72_000205"
     CDS             25117..26436
                     /gene="brnQ"
                     /locus_tag="OQQ72_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HCS2010064.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            26512..27885
                     /gene="proY"
                     /locus_tag="OQQ72_000206"
     CDS             26512..27885
                     /gene="proY"
                     /locus_tag="OQQ72_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HCS2010065.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            28041..29763
                     /gene="malZ"
                     /locus_tag="OQQ72_000207"
                     /pseudo
     CDS             28041..29763
                     /gene="malZ"
                     /locus_tag="OQQ72_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(29768..30349)
                     /gene="acpH"
                     /locus_tag="OQQ72_000208"
     CDS             complement(29768..30349)
                     /gene="acpH"
                     /locus_tag="OQQ72_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HCS2010066.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     HRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALGTRFWQFYPRMMAQASHKAL"
     gene            30442..31512
                     /gene="queA"
                     /locus_tag="OQQ72_000209"
     CDS             30442..31512
                     /gene="queA"
                     /locus_tag="OQQ72_000209"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCS2010067.1"
                     /translation="MRVTDFFFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            31568..32695
                     /gene="tgt"
                     /locus_tag="OQQ72_000210"
     CDS             31568..32695
                     /gene="tgt"
                     /locus_tag="OQQ72_000210"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCS2010068.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            32718..33050
                     /gene="yajC"
                     /locus_tag="OQQ72_000211"
     CDS             32718..33050
                     /gene="yajC"
                     /locus_tag="OQQ72_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCS2010069.1"
                     /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            33078..34925
                     /gene="secD"
                     /locus_tag="OQQ72_000212"
     CDS             33078..34925
                     /gene="secD"
                     /locus_tag="OQQ72_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCS2010070.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            34936..35907
                     /gene="secF"
                     /locus_tag="OQQ72_000213"
     CDS             34936..35907
                     /gene="secF"
                     /locus_tag="OQQ72_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HCS2010071.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            36036..36383
                     /locus_tag="OQQ72_000214"
     CDS             36036..36383
                     /locus_tag="OQQ72_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HCS2010072.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKKK"
     gene            complement(36560..37444)
                     /gene="tsx"
                     /locus_tag="OQQ72_000215"
     CDS             complement(36560..37444)
                     /gene="tsx"
                     /locus_tag="OQQ72_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HCS2010073.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
     gene            complement(37743..38282)
                     /locus_tag="OQQ72_000216"
     CDS             complement(37743..38282)
                     /locus_tag="OQQ72_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS2010074.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTTLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            38433..38882
                     /gene="nrdR"
                     /locus_tag="OQQ72_000217"
     CDS             38433..38882
                     /gene="nrdR"
                     /locus_tag="OQQ72_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HCS2010075.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            38886..39989
                     /gene="ribD"
                     /locus_tag="OQQ72_000218"
     CDS             38886..39989
                     /gene="ribD"
                     /locus_tag="OQQ72_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCS2010076.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            40078..40548
                     /gene="ribE"
                     /locus_tag="OQQ72_000219"
     CDS             40078..40548
                     /gene="ribE"
                     /locus_tag="OQQ72_000219"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCS2010077.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            40568..40987
                     /gene="nusB"
                     /locus_tag="OQQ72_000220"
     CDS             40568..40987
                     /gene="nusB"
                     /locus_tag="OQQ72_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCS2010078.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            41065..42042
                     /gene="thiL"
                     /locus_tag="OQQ72_000221"
     CDS             41065..42042
                     /gene="thiL"
                     /locus_tag="OQQ72_000221"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HCS2010079.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGVRIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            42020..42538
                     /gene="pgpA"
                     /locus_tag="OQQ72_000222"
     CDS             42020..42538
                     /gene="pgpA"
                     /locus_tag="OQQ72_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HCS2010080.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(42592..43566)
                     /gene="yajO"
                     /locus_tag="OQQ72_000223"
     CDS             complement(42592..43566)
                     /gene="yajO"
                     /locus_tag="OQQ72_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HCS2010081.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLFYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(43621..45483)
                     /gene="dxs"
                     /locus_tag="OQQ72_000224"
     CDS             complement(43621..45483)
                     /gene="dxs"
                     /locus_tag="OQQ72_000224"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCS2010082.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            complement(45508..46407)
                     /gene="ispA"
                     /locus_tag="OQQ72_000225"
     CDS             complement(45508..46407)
                     /gene="ispA"
                     /locus_tag="OQQ72_000225"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HCS2010083.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSPDTSALEALADYIIQRNK"
     gene            complement(46407..46649)
                     /gene="xseB"
                     /locus_tag="OQQ72_000226"
     CDS             complement(46407..46649)
                     /gene="xseB"
                     /locus_tag="OQQ72_000226"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HCS2010084.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            46855..48303
                     /gene="thiI"
                     /locus_tag="OQQ72_000227"
     CDS             46855..48303
                     /gene="thiI"
                     /locus_tag="OQQ72_000227"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HCS2010085.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIALQTE
                     QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            complement(48357..48947)
                     /gene="yajL"
                     /locus_tag="OQQ72_000228"
     CDS             complement(48357..48947)
                     /gene="yajL"
                     /locus_tag="OQQ72_000228"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HCS2010086.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLQVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(48910..49821)
                     /gene="panE"
                     /locus_tag="OQQ72_000229"
     CDS             complement(48910..49821)
                     /gene="panE"
                     /locus_tag="OQQ72_000229"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HCS2010087.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSANLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            49989..50480
                     /gene="yajQ"
                     /locus_tag="OQQ72_000230"
     CDS             49989..50480
                     /gene="yajQ"
                     /locus_tag="OQQ72_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HCS2010088.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            complement(50608..51972)
                     /locus_tag="OQQ72_000231"
     CDS             complement(50608..51972)
                     /locus_tag="OQQ72_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2010089.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(52121..53011)
                     /gene="cyoE"
                     /locus_tag="OQQ72_000232"
     CDS             complement(52121..53011)
                     /gene="cyoE"
                     /locus_tag="OQQ72_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCS2010090.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            complement(53023..53352)
                     /locus_tag="OQQ72_000233"
     CDS             complement(53023..53352)
                     /locus_tag="OQQ72_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HCS2010091.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(53352..53966)
                     /locus_tag="OQQ72_000234"
     CDS             complement(53352..53966)
                     /locus_tag="OQQ72_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HCS2010092.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTASGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            complement(53956..55947)
                     /gene="cyoB"
                     /locus_tag="OQQ72_000235"
     CDS             complement(53956..55947)
                     /gene="cyoB"
                     /locus_tag="OQQ72_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HCS2010093.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
                     GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMIYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG
                     ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWANSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT
                     WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN"
     gene            complement(55969..56916)
                     /gene="cyoA"
                     /locus_tag="OQQ72_000236"
     CDS             complement(55969..56916)
                     /gene="cyoA"
                     /locus_tag="OQQ72_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HCS2010094.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH"
     gene            complement(57377..58852)
                     /gene="ampG"
                     /locus_tag="OQQ72_000237"
     CDS             complement(57377..58852)
                     /gene="ampG"
                     /locus_tag="OQQ72_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HCS2010095.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            complement(58896..59474)
                     /locus_tag="OQQ72_000238"
     CDS             complement(58896..59474)
                     /locus_tag="OQQ72_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2010096.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLAASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            59779..60096
                     /gene="bolA"
                     /locus_tag="OQQ72_000239"
     CDS             59779..60096
                     /gene="bolA"
                     /locus_tag="OQQ72_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HCS2010097.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            60440..61738
                     /gene="tig"
                     /locus_tag="OQQ72_000240"
     CDS             60440..61738
                     /gene="tig"
                     /locus_tag="OQQ72_000240"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCS2010098.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDSAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            61983..62606
                     /gene="clpP"
                     /locus_tag="OQQ72_000241"
     CDS             61983..62606
                     /gene="clpP"
                     /locus_tag="OQQ72_000241"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCS2010099.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            62732..64006
                     /gene="clpX"
                     /locus_tag="OQQ72_000242"
     CDS             62732..64006
                     /gene="clpX"
                     /locus_tag="OQQ72_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HCS2010100.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            64194..66548
                     /gene="lon"
                     /locus_tag="OQQ72_000243"
     CDS             64194..66548
                     /gene="lon"
                     /locus_tag="OQQ72_000243"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCS2010101.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            66757..67029
                     /gene="hupB"
                     /locus_tag="OQQ72_000244"
     CDS             66757..67029
                     /gene="hupB"
                     /locus_tag="OQQ72_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HCS2010102.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            67221..69092
                     /gene="ppiD"
                     /locus_tag="OQQ72_000245"
     CDS             67221..69092
                     /gene="ppiD"
                     /locus_tag="OQQ72_000245"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS2010103.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            69243..69614
                     /locus_tag="OQQ72_000246"
     CDS             69243..69614
                     /locus_tag="OQQ72_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HCS2010104.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            69708..70106
                     /gene="fadM"
                     /locus_tag="OQQ72_000247"
     CDS             69708..70106
                     /gene="fadM"
                     /locus_tag="OQQ72_000247"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain acyl-CoA thioesterase FadM"
                     /protein_id="HCS2010105.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(70158..70853)
                     /gene="queC"
                     /locus_tag="OQQ72_000248"
     CDS             complement(70158..70853)
                     /gene="queC"
                     /locus_tag="OQQ72_000248"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HCS2010106.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(70918..72619)
                     /locus_tag="OQQ72_000249"
                     /pseudo
     CDS             complement(70918..72619)
                     /locus_tag="OQQ72_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
     gene            72719..73501
                     /gene="cof"
                     /locus_tag="OQQ72_000250"
     CDS             72719..73501
                     /gene="cof"
                     /locus_tag="OQQ72_000250"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HCS2010107.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTLVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTH"
     gene            73690..74148
                     /gene="decR"
                     /locus_tag="OQQ72_000251"
     CDS             73690..74148
                     /gene="decR"
                     /locus_tag="OQQ72_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DecR"
                     /protein_id="HCS2010108.1"
                     /translation="MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
                     DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE
                     YDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE"
     gene            74178..75807
                     /locus_tag="OQQ72_000252"
                     /pseudo
     CDS             74178..75807
                     /locus_tag="OQQ72_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
BASE COUNT        18486 a        18794 c        20192 g        18335 t
ORIGIN      
        1 acgtagatca agactggtcc gcgaacgtgg gtgttaaata tacttggtaa tattcttcac
       61 tccgaagaaa ttctggtaat ttaatctaaa taatgcccgt caaggatttg acgggcatta
      121 ctgcaaagga cgcgcaaatg ttatctgtag ttaaacctct tcaggaattt ggtaagctcg
      181 ataaatgttt gtccagatac ggtacgcgct tcgagtttaa taatgaaaag caagttatat
      241 tttccagtga tgtcaatagc gaagatactt tctttatttt agagggcgtt atctctctgc
      301 gtagagaaga aaacgtactt atcggtatta cccaggcttc ttatattatg gggctggctg
      361 atggtttaat gaaaaacgat ataccataca aattaatatc agaaggaaat tgtacgggat
      421 atcatctacc agccaaacaa accattacgc ttattgaaca aaatcaactc tggcgagacg
      481 ctttttactg gttagcctgg caaaatagaa ttctggaatt acgcgacgtg cagctcattg
      541 ggcataattc ctacgaacaa atccgcgcaa cattattatc aatgattgac tggaatgaag
      601 aattgcgatc acgtattggt gtgatgaatt atatccatca acgtacacgc atatcgcgtt
      661 ctgtcgtcgc agaagttctc gctgctttgc gtaaaggcgg ctatatcgaa atgaataaag
      721 gcaaactggt cgctatcaac tgtttgcctt cagagtatta atcaggatgc agggataacc
      781 aacggtttat tcccgcttag ctcggtcacc agatcattga tgccatcgct catattttta
      841 aagcgcgtca acggcgaacg agtgaccacc acaaacgcgc caatattctt ctgcgggatc
      901 atcgccatat aggtaatgaa accgccacca ccgcctgtct tctgaataat ccccggacga
      961 ccctctttcg gggccatata tacccagcct aaaccaagcg catccgcttt gccggggaca
     1021 tccatgccaa tcactttggt aaactgcgcg cgctgataaa tcaacgtctg catgcgatct
     1081 gcctggttac tgcgctgata aaaatcagat gataaatact gctgcatcca gcgcatcata
     1141 tcgccaggcg tggaatagac gccgccgctg ccaattgccg ccagcgtgtt attgcacgga
     1201 ctggcaccgc gctcagcaac cattaagcgg cggcactgat ccggtgaggg ggtgtaggtg
     1261 gtgtctttca tccccaatgg acgggtaatc tgctcttcaa acaactgggt ataaggcttg
     1321 ccggacgcat tcgccagtgc atctgccagc aggtcgaacg caaggttaga gtacgccgcc
     1381 tgactgcctg gcgcggcttt cagcttcgcc gtagaaaggt atttccagcg ttgctcgcgc
     1441 gttggccaga caaacaccgg acgatgtgcc gcgccaccgg gctgttcacg gggcagggcg
     1501 ctggtatggg ttgccagatt cactagggta atgggcgtcc cattgtaggt tggcacgcgt
     1561 gcgcctggcg gagcatattt acttagcgga tcgtttaact tcacggtccc ctggtcgagc
     1621 aatttcacca gcatttcact ggtcattagc ttggtgaggg aagcaatacg cacgaccgaa
     1681 tccagctgcg ggcgaacgtt attaccaggt cgcgtttcgc cataactgcg aaagacgcgc
     1741 tggttaccgt cgataacaac cagcgccatc cccgtggcac cgctgccgta aaaaatatga
     1801 tcggcataac gatcgacaat atcagaggca aactccggtt cagtgatcgg ctgcgccgca
     1861 tggacggagg tcaatgacgc cgcacacagc acggcagaaa aaagcagact acgtttcaac
     1921 ggtggtgtcc atagattgaa tgaaggtaac tgagcgtatt tatactactc attgatggat
     1981 tgcaaagggc gaattagtgc aataatagtg ttaaaaacgt aacggcgcgt aaacacgatc
     2041 tttttcctgc tcaccaatgc ctgcatttgt gatcctgcgc gtgttaatcc gcttatgtaa
     2101 acaatctttg gtttgtgaaa tccgtcgaaa caattcttat ggtcaggctg gcgaactaag
     2161 cgccttgcta tgggtcacaa tgggcggttt catttggctg acgctttgta gtggtcatgc
     2221 ggttaataca cagcagttgt taaaacgata agaagttagc aggagtgcat atgtttaagt
     2281 cttttttccc aaagccggga gcgttttttc tctcggcctt tgtttgggca ttgattgccg
     2341 ttatcttctg gcaagccggt gggggagact gggtggcgcg tatcaccggc gcttccgggc
     2401 agatcccgat tagcgccgcg cgtttctggt cgttggattt cctgattttt tacgcttact
     2461 acattgtttg cgtaggactt tttgcatttt tctggtttat ctacagcccg caccgttggc
     2521 aatactggtc aatactcggt actgcactga tcatcttcgt cacctggttt ttggtggaag
     2581 tcggagtcgc cgtcaacgcc tggtatgcac cgttctatga tctgattcaa accgcgctaa
     2641 gttcgccgca taaagtcact atcgaacaat tttaccgcga agtgggcgtc tttctgggga
     2701 ttgcgctgat cgcggtggtg atcagtgtac tgaacaactt ctttgtcagt cactatgtgt
     2761 tccgctggcg tacggcgatg aacgaatatt acatggcgaa ctggcaacaa ctgcgtcata
     2821 tcgaaggtgc cgcacagcgt gtgcaggaag acaccatgcg ttttgcttca acgctggaga
     2881 atatgggcgt cagttttatc aacgccatca tgacgttggt cgccttcctg ccggtgctgg
     2941 taacgctctc cgcgcatgtg ccggagctgc cgattatcgg gcacattccg tatggtctgg
     3001 tgattgccgc tatcgtctgg tcgctgatgg ggaccggatt gctggcagtg gtagggatca
     3061 aactgccggg gctggagttt aaaaaccagc gagtagaggc cgcctaccgt aaagagctgg
     3121 tttatggtga agacgatgcc acgcgcgcga cgccgcctac ggtacgcgag ctgtttagcg
     3181 ccgtacggaa aaactatttt cgcctctatt ttcactatat gtatttcaac atcgcccgca
     3241 ttctctattt gcaggtcgat aacgttttcg gtttgttctt gctgtttccg tcaattgttg
     3301 ccggtacgat tacgctcggc ctgatgacgc agattaccaa cgtttttggt caggttcgcg
     3361 gtgctttcca gtacctgatt aactcatgga ccacactggt tgagttgatg tctatctaca
     3421 aacgtctgcg cagctttgaa catgagctgg atggtgacaa aattcaggaa gtaacccata
     3481 ccttgagcta aaaaggagaa gtaatgtcgc gcgtcaatca tctatcttcg ctgtcattgt
     3541 tggcggttct ggttttagcg gggtgtagta gtcaggctcc gcaaccgttg aaaaagggcg
     3601 aaaaagcgat agatgtagcg agcgtcgtgc ggcagaagat gcctgcgagc gtgaaagacc
     3661 gcgatgcctg ggcgaaagat ctcgccacca cctttgaaag tcaggggctg gcaccgacgc
     3721 tggaaaacgt ctgctcggtg ctggcggtgg cgcagcagga gtcaaattat caggcagatc
     3781 cggccgttcc gggcttaagc aagatcgcct ggcaagagat tgaccgtcgt gctgaacgga
     3841 tgcacattcc tgcttttctg gttcataccg cgctaaaaat caaatcgcca aacggcaaaa
     3901 gttatagcga acggttagat tcggtgcgta cagaaaagca attgagcgcg atttttgacg
     3961 atctgatcag catggtacca atggggcaga cgctgtttgg ttcgcttaat ccggtgcgca
     4021 ccggtgggcc gatgcaggtc agcattgctt ttgccgaaca gcataccaaa gggtatccgt
     4081 ggaaaatgga cggtacagtt cgtcaggaag tcttcagtcg ccgcggcggg ttgtggtttg
     4141 gtacttacca tttactgaat tatcccgcca gctatagcgc accgatatac cgctttgctg
     4201 attttaacgc tggctggtac gccagccgta atgccgcgtt tcagaacgcg gtcagtaagg
     4261 ccagcggcgt gaagctggca ctggacggtg atttaattcg ttacgacagt aaagaacccg
     4321 ggaaaaccga actggcaacg cgcaaactgg cgggaaaact ggggatgagc gacagcgaaa
     4381 ttcgccgtca gttagagaaa ggtgacagct tctcttttga ggagacggcg ctgtacaaga
     4441 aagtttatca acttgccgaa gcgaaaacgg gtaaatcact accccgcgaa atgttgcctg
     4501 gcattcaact ggaaagcccg aaaatcaccc gcaacctgac tacggcctgg tttgcgaagc
     4561 gcgtagacga acggcgggcg cgttgtatga aacagtgatc aaacaggaat gtcatgccag
     4621 ataaggcgtt ttaggccgta tctggcaacg taaatcttac tggcggcgat gtcgccagtg
     4681 cagccatagc gccaccactg caaaaatgag gcagcctact aaaaacggga tcagcccgaa
     4741 aatggtgccg acacctaaac caatttccac ccgtgggcga cctgtttcct ggacctgcat
     4801 taaacgctca tagacgccgg gcgcatgcac taacaggttc agcaattgcg ccccagccca
     4861 aaagcaaaac agcacaaaca acgcataggc aatgttgcca ggcgttgaag aggcattgcg
     4921 atattttccg ctaaacagcg attttgacag ggtgaaatca gccataaaaa cctccggaag
     4981 tcatctgctt ctcttctggt gtgataccag cggcttatgg caagtctgac aggtcattta
     5041 gattgtcaat atcagaatca tggtaaattg atgttgggaa tattcccgaa gcgtgaatct
     5101 tcgttgtgag tcacaaaatg gcaaccttaa gttaaattta ttaacaatta cgaaaatgtt
     5161 gtctacacca cagacggttg ttacagaata tgcaaggatg ttgtttttcg ttaacggagc
     5221 tgccatgaat ctgcctgtaa aaatccgccg tgactggcac tactatgcgt tcgccattgg
     5281 ccttatattc attcttaatg gcgtggtggg gttactggga tttgaagcaa aaggttggca
     5341 gacctatgcc gtcggtctgg tgacgtgggt gattagtttc tggctggcgg ggttgattat
     5401 tcgtcgtcgc gatgaagaaa ctgaaaacgc ccaataagaa tattatcggg cgttaaaata
     5461 ttacattgtg gttttcaatg cgttatccgc agcgtgacgc tccagcgcca gctcaatcaa
     5521 acgtgtgatc agatcggtgt aacccagacc gctggcttgc cacagcttcg gatacatact
     5581 gatgttggtg aagccaggca gtgtgttgat ctcgttgatc accacttcgt tctctggggt
     5641 taaaaacacg tctacacgcg ccatgcctgc gcatcccaac gtttgataag cctgaacggc
     5701 aatcgcccgg atcttatcgt tgatttctgg cgcaatggct gccggaacta ccactttcgc
     5761 gccatcttcg tcaatgtact tggtgtcgta ggcatagaag tcgctggtga gtacgatctc
     5821 gccacaggtg ctggcttgcg ggttgtcgtt gcccagaact gcgcattcga tctcacgacc
     5881 tttgatccct tgctcaacga tcactttatg atcgaattcg aacgccagat cgacggcaat
     5941 tgcgtactgt tcttcactgg ttactttgct gacaccaaca gaagagccct gattagccgg
     6001 ttttacaaac agtggtaacc tcagtttaga ctccacttcg gcaaaactaa tgttgtgacg
     6061 attggcgcgc gtcagggtaa taaatggcgc aatgttcagc ccggcatcgc gcagcagacg
     6121 tttggtaaca tctttatcca tacaggctgc tgaagccaga acatcagaac ctacaaacgg
     6181 taaattggcg acccgcagca ttccctgcaa ggaaccatct tcgcccagcg taccgtggac
     6241 aatcgggaaa atgacatcca ccgtcggtaa cggctgaccg ttttgcgcgt cgataagctg
     6301 atgctcatgt ttacttggca cctgcgcaag gctagtcgcc gaagggcgca acgcaatatg
     6361 ggcaggatcg tctgcattta gcagataatt gctggcatcg ctgacgtgcc attgcccttg
     6421 tttatcaatg cccagcagca caacgtcgaa gcgactttta tcaatggcat cgacaatgtt
     6481 ttttgccgat tgcagagaca cttcatgttc cgctgattta ccaccaaaaa cgattcctac
     6541 ccgcagtttt tccatcttaa aaacctatcc cgtctaacac aaagtgcata cattaccacg
     6601 acaaaacggg ggattcgcgg ccttctgaca gaatgttgca atcttctgct gacaaagcgt
     6661 gcaacgtaat ggtgaagaaa gtgcgttatt acaaagatgt gcgcgagatc acaaaaatga
     6721 tgaacgggaa gctaatttat tcctggctta aatggccatg cggtgagttt tttctcttag
     6781 ttgtaagtaa acgcagagaa tatatttcat aacttttgtt tataataaag gttgataatt
     6841 aaaggcctgt tctttgtgtg gttaattatt taaatatgag aaacgtttcg ctggtaatca
     6901 aacaaagaac atttgcgcaa agtatttcct ttgtcataaa aataatactt ccagacacta
     6961 tgaagttgtg aaacataatg ttaacttctc catacgttgg ataaggaaat acagacatga
     7021 aaaatctcat tgctgagttg ttattaaagc ttgcccaaaa agaagaagag tcgaaagaac
     7081 tgtgcgcgca ggtagaagct ttggagatta tcgtcactgc aatgcttcgc aatatggcac
     7141 aaaatgacca acagcgcttg attgaacagg tggagggggc tctttacgag gtaaagcctg
     7201 atgccagcat tcctgacgac gatacggagc tgctgcgcaa ttatgtaaag aagttattga
     7261 agcatcctcg tcagtaaaaa gttaatcttt tcaacagctg tcataaagtt gtcacggccg
     7321 agacttatag tcgctttgtt tttatttttt aatgtatttg tacatggaga aaataaagtg
     7381 aaacaaagca ctattgcact ggcactctta ccgttactgt ttacccctgt gacaaaagcc
     7441 cggacaccag aaatgcctgt tctggaaaac cgggctgctc agggcgatat tactgcaccc
     7501 ggcggtgctc gccgtttaac gggtgatcag actgccgctc tgcgtgattc tcttagcgat
     7561 aaacctgcaa aaaatattat tttgctgatt ggcgatggga tgggggattc ggaaattaca
     7621 gccgcacgta attatgccga aggtgcgggc ggctttttta aaggtatcga tgccttaccg
     7681 cttaccgggc aatacactca ctatgcgctg aataaaaaaa ccggcaaacc ggactacgtc
     7741 accgattcgg ctgcatcagc aaccgcctgg tcaaccggtg tcaaaaccta taacggcgcg
     7801 ctgggcgtcg atattcacga aaaagatcac ccaacgattc tggaaatggc aaaagccgca
     7861 ggtctggcga ccggtaacgt ttctaccgca gagttgcagg atgccacgcc cgctgcgctg
     7921 gtggcacatg tgacttcgcg caaatgctac ggtccgagcg cgaccagtga aaaatgtccg
     7981 ggtaacgctc tggaaaaagg cggaaaagga tcgattaccg aacagctgct taatgctcgt
     8041 gccgacgtta cgcttggcgg tggcgcaaaa acctttgctg aaacggcaac cgccggtgaa
     8101 tggcagggaa aaacgctgcg tgaacaggca caggcgcgtg gttatcagtt ggtcagcgat
     8161 gccgcctcgc taaatgcggt gacggaagcg aatcagcaaa aacctctgct tggactgttt
     8221 gctgacggca atatgccagt gcgctggcta ggaccgaaag caacgtacca cggcaatatc
     8281 gataagcccg cagtcacctg tacgcttaat ccgcaacgta atgacagtgt accaaccctg
     8341 gcgcagatga ccgacaaagc cattgaattg ttgagtaaaa atgagaaagg atttttcctg
     8401 caagttgaag gtgcgtcaat cgataaacag gatcacgctg cgaatccttg tgggcaaatt
     8461 ggcgagacgg tcgatctcga tgaagccgta caacgggcgc tggaattcgc taaaaaggat
     8521 ggcaacacgc tggtcatagt caccgctgat cacgcccacg ccagccagat tgtcgcgccg
     8581 gataccaaag ctccgggcct cacccaggcg ctaaatacca aagatggcgc agtgatggtg
     8641 atgagctacg ggaactccga agaggattca caagaacata ccggcagtca gttgcgtatt
     8701 gcggcgtatg gcccgcatgc cgccaatgtc gttggactga ccgaccagac cgatctcttc
     8761 tacaccatga aagccgccct ggggctgaaa taaaaccgcg cccggcagtg aattttcgct
     8821 gccgggtggt ttttttgctg ttagcaacca gacttaatgg caaatctcgg gcgcatacgc
     8881 tcatggttaa aacatgaaga gggatggtgc tatgaaaatt acattactgg ttaccttgct
     8941 tttcggtctg gtttttttaa ccacagtcgg cgctgccgag agaacgttaa ccccacaaca
     9001 acagcgtatg acctcctgta atcagcaggc gacggcgcag gcgttgaaag gggatgctcg
     9061 taagacctac atgagtgatt gcctgaagaa cagcaagtct gcgcctggtg aaaaaagttt
     9121 gacgccacag cagcaaaaga tgcgcgaatg taataatcaa gcaacgcaac aatctctgaa
     9181 aggtgatgat cgtaataagt ttatgagtgc ctgcctcaag aaagccgcct gatacctgat
     9241 agtgctaacg ggtgagctac gaaagtggct cacccgaaat ttcatacttc tgcctttagc
     9301 cccgtctcta taatttggga aaattgtttc tgaatgttcc caaaaataat gaatgatgaa
     9361 aactttttca aaaaagcggc ggcgcatggg gaggaacctc ctttaactcc tcaaaacgaa
     9421 catcagcggt ccgggctgcg cttcgcccgt cgcgtcagac taccccgtgc ggttggcctg
     9481 gctggcatgt tcttaccgat tgcttcaacg ctggtttcgc acccgccgcc gggctggtgg
     9541 tggctagtgt tggtcggctg ggcgttcgtc tggccgcatt tagcctggca gatagcgagc
     9601 agggccgtcg atccgcttag ccgggaaatt tacaacttaa aaaccgatgc agtattagcg
     9661 ggaatgtggg taggcgtaat gggcgtaaac gtgctgcctt ccaccgctat gttgatgatt
     9721 atgtgtctga atttgatggg ggcaggcggc ccccgtctgt ttgtcgcggg tctggtgttg
     9781 atggtggttt cctgccttgt caccctcgag cttacgggca ttaccgtgtc gttcaatagt
     9841 gcgccgctgg aatggtggct ctcccttccc attattgtcg tttatcctct gctgtttggc
     9901 tgggtcagct accagacggc aaccaaactg gcggaacata aacgcaggtt gcaggtcatg
     9961 agtacccgcg acggcatgac gggcgtgtat aaccgacgtc attgggaaac tatgttacgc
    10021 aatgaatttg ataactgtcg gcggcataat cgcgatgcaa cgttactgat tatcgatatc
    10081 gaccatttca agagcatcaa cgatacctgg ggtcatgatg tgggcgatga agcgattgtg
    10141 gcgcttaccc gacagttaca aattaccctg cgcggtagcg atgtgattgg tcggtttggc
    10201 ggcgatgagt ttgcagtaat catgtccggt acgccagctg agagcgccat taccgccatg
    10261 ttacgggtgc gtgaagggct aaacacgtta cgcttgccga atacgccaca ggtaacttta
    10321 cggattagtg tgggggttgc gccgctgaac ccacaaatga gtcactatcg tgagtggttg
    10381 aaatcggcag atttggcgct ttacaaagca aagaaagccg gacgtaaccg caccgaagtg
    10441 gcggcctgac gtcaggcgaa agtcatcagg atttgctgag tttttctgat ttttccatac
    10501 acttcgtcat cgcttcgatc actgcggcac ggaagccttt ctcttccagt acgcgtaccg
    10561 cttcaatggt ggtgcctccc ggtgagcaga ccatatcttt cagtgccccc ggatgttctc
    10621 ccgtttccag caccattttt gcggaaccca ttaccgcctg agcggcaaat ttatacgcct
    10681 gggcgcgtgg catcccgccc agcacggcgg cgtcggccat cgcttcgata aacataaata
    10741 cgtaggctgg cgaagaaccg ctcacaccga ctaccgggtg gatcatcggc tcagcaatta
    10801 cttccgcttc gccaaagcag cggaaaatat tcagcacatc agcggtatct tctggggtta
    10861 ccagcgcgtt tggcgttacg gaggtcatcc cggcattaac cagcgcggga gtgttcggca
    10921 tggcgcggat aattttccgg tcatggccca gcgcgcgggc aagctggtcg agcgtgacac
    10981 ctgcagcaat agaaacgacc agagagtctt tattcaggct ggaggtgatt tcgctaagca
    11041 ctttaatcat gatgccaggt ttaacggcag caaaaatgat gtcggcgatt tgcgccactt
    11101 cttgcgccga ttctgcggcg ttgatgccga actggtcatg cagggcggcg actttattcg
    11161 gggagggggt gtatacccag atttgccctg gaagcacctg accgctggca atcagaccgc
    11221 cgagaatggc ttttcccata ttgccgcagc caataaaacc gattttcttt tccattgcct
    11281 cactcctgcc gtgaaattca ttgttttgat aatcgctggc agaagcataa acagaactat
    11341 gccggaaggc aaaagcgcga cacaatagag gattacccaa caaaggatga ctttatgaca
    11401 atttgggtgg atgctgacgc gtgtcccaat gtaattaaag agattttgta tcgcgcggcg
    11461 gaacgtatgc agatgccgct ggtactggta gcaaaccaga gtttacgcgt gccgccatcg
    11521 cgatttattc gtacgctgcg cgtcgcggca ggtttcgacg ttgccgataa cgaaattgtc
    11581 cggcagtgtg aagcgggcga tttggtgatc accgcagata tacctttggc tgctgaagcc
    11641 atcgagaaag gcgcagcggc gcttaatccg cgcggcgaac gttacacgcc agcgaccatt
    11701 cgtgagcgcc tgacgatgcg cgattttatg gataccttac gtgccagtgg gatccagacc
    11761 ggcggaccag atagcctttc acaacgtgac cgccaggcct ttgccgcgga gctggagaag
    11821 tggtggctgg aagtgcaacg tagtcgtggc taaatgtaat ttattattta cacttcattc
    11881 ttgaatattt attggtatag taagggatgt attgagattt tcactttaag tggaattttt
    11941 tctttacaat cgaaattgta ctagtttgat ggaatgatcg ctattctcat gacaccggct
    12001 ttcgccgcat tgcgacctat tggggaaaac ccacgatgac acaacctctt tttctgatcg
    12061 ggcctcgggg ctgtggtaaa acaacggtcg gaatggccct tgccgattcg cttaaccgtc
    12121 ggtttgtcga taccgatcag tggttgcaat cacagctcaa tatgacggtc gcggagatcg
    12181 tcgaaaggga agagtgggcg ggatttcgcg ccagagaaac ggcggcgctg gaagcggtaa
    12241 ctgcgccatc cacagttatc gctacaggcg gcggcattat tctgacggaa tttaatcgtc
    12301 acttcatgca aaataacggg atcgtggttt atttgtgtgc gccagtatca gtcctggtta
    12361 accgactgca agctgcaccg gaagaagatt tacggccaac cttaacggga aaaccgctga
    12421 gcgaagaagt tcaggaagtg ctggaagaac gcgatgcgct atatcgcgaa gttgcgcata
    12481 ttatcatcga cgcaacaaac gaacccagcc aggtgatttc tgaaattcgt agcgccctgg
    12541 cacagacgat caattgttga ttttagagcg cctatactta acgttcattc cgtgaaataa
    12601 ggaagaacga tgccaacgaa accgccttat cctcgtgaag catatatagt gacgattgaa
    12661 aaaggaaagc caggacagac ggtaacctgg taccaactca gagccgatca tcctaaacca
    12721 gactcgttga tcagtgaaca tccgaccgct caggaagcga tggatgcgaa aaaacgctat
    12781 gaggaccctg acaaagagtg accgcatcag actgctcgga agggattctg agtgccacta
    12841 caagggatct gcgtcacatt tttcataatt catgtttttc taataattag aatattaaac
    12901 aataacaatc cattactgga atcatttgga atctttacat tatgccgtgc acgtctgctg
    12961 ctacgctttt tgtcatttgt agcacaagta agtgtcagca gtggtgcttc acacttgccc
    13021 ggtaattaac gacgaaagaa aagtaaggtg gatgaacaat gagtgcgtcg ttggcgatcc
    13081 tgaccatcgg cattgtacct atgcaggagg ttttgccgct cctgacggaa tacattgacg
    13141 aagataatat ttcccatcat agcctgctgg ggaagttaag tcgtgaagaa gtgatggcgg
    13201 agtacgcgcc agaagcaggc gaagacacca ttctcacatt attaaatgac aaccagctgg
    13261 cccatgtttc gcgtcgtaaa gtggagcgag acctgcaagg tgtggttgaa gtgctcgata
    13321 atcagggtta tgacgtcatt ttattaatga gtacagcaaa cattagtagt atgactgcgc
    13381 gtaatacgat ctttcttgag ccgtcgcgaa tattgcctcc actggtttcc tctattgttg
    13441 aagatcatca ggtgggggtt atcgttccgg ttgaggagat gctgcccgtt caggcgcaaa
    13501 aatggcaaat tttgcagaaa tcgccggtat tttcattggg taaccccatt catgattcag
    13561 aacaaaaaat cattgatgca gggaaagaat tactggcaaa aggggctgat gtcatcatgc
    13621 tggattgttt aggatttcac caacgtcatc gcgatttact gcaaaaacag ctcgatgttc
    13681 ctgtcttgct gtctaacgta ttgattgcac ggctggctgc ggaattactg gtgtaatttt
    13741 gcgtgacagc cagcgcctct ggcccctata gtgaagtaga tgttcaacta ccagacaggg
    13801 ccagtttatg cttcaaagta atgagtactt ttccggcaaa gtgaaatcaa tcggcttttc
    13861 cagcagcagc actggtcgcg ccagcgtggg tgttatggtt gaaggcgaat acaccttcag
    13921 caccgctgag ccggaagaga tgacggtaat cagtggcgcg ctgaatgtgt tactgcctga
    13981 tgcgaccgac tggcaggtgt atgaagccgg ttcggtgttt aatgttcccg gtcacagtga
    14041 gtttcatctg caagttgccg aacccacctc ttatctgtgc cgctatctgt aattcctcgc
    14101 cttccccttg aacgggaggg catttttctg aaatatcctc tctttaaccc ataataatat
    14161 ttcctttgct gcgatttttt caatttccga tatattcata attcatcaag gttgatataa
    14221 atatcagtga agatctccag atattgttgc ggaactggct acgataaaag ataaatcaga
    14281 tgatgaatgg tggcgtgcat tgctgcaaag tcgcaatgat catttgcgcc aaacggcatt
    14341 acgcaacgca cataccccgg cgtcgttgtt aacgacattg accgagtctc ggcatcggtc
    14401 gctagctatg aataatccac agctcgctgc cgatgtgaaa acgacgtggt taaaagagga
    14461 tccatcatta ctcttatttg tcgaacaacc cgatctttcg ctgttacggg atttagtgaa
    14521 aaccggggca atgcggaaaa ttcgcagtga agcgcgtcac tggcttgagg aaaaacaatg
    14581 acacaacgtc catggagcaa gttacagcat aaaacgcata atattgctgc gctaaaaatt
    14641 attgtccgcc gtagcgaata attatatccc tggtgtggct tcgtacgccg gataagacgc
    14701 ggcaggcgtc gcatccggca ttaaaggaaa atcagcaatt aacgttgtgc ttcgccacct
    14761 aatccttcaa tcaggttttg aattaacgct gccagttcac cagtcatcag gatgaaatcg
    14821 gcatcaaaac gctgggcgaa atcttcacgg tcgatatctt cgttttgatc gcgcagctcg
    14881 tcgcaaaact tcagacgctt gagcgaacca tcgtcgcaca tcacaaactg aatgcgctgc
    14941 tgccagtcga gcgccagttt agtcaccact tttccggctt cgatgtgatt ggtgatctct
    15001 tcgctggtca gatcttgttt cttcgcgcgg atcacgccgc catcttccag caacgatttc
    15061 agctcggctt catcaagcag ctggaagccc tgtgccgcgc taccggagcg aacccattcg
    15121 gtcagcgtca gttcaatcgg gttttccatg ctcaatggta ccacaggtaa cgaccccagg
    15181 cttttacgca gcagtgccag cgtatcttcc gcttttttgg cactggcgca gtccaccata
    15241 atcaaaccgt taaccgtgtc gatccacatc attgtctggc taaaacggct gaaagcacgc
    15301 ggcaacagag agtgcagcac ttcgtctttc agcgaatctt tttcggtttt cttcagctta
    15361 cgcgcctgtt ccgcttccag tttggcgatt ttcgcttcca gcgcctgctt aatcaccgga
    15421 gacgggagga ttttttcttc tttgcgcgcg cagataacaa tttgaccatt ggcaacgtgc
    15481 gttaacgcat cgctgtgcga tcccatcgga ggaacccagc ccatcttcgc catgtcctgg
    15541 ctgccgcatg gggtaaatgc catcgaggct agctgttttt ccatctcttc tgcacgcagc
    15601 gaaatctcgc ggctaagacg gtaaaccatt aaatttttga accacagcat gataatttcc
    15661 acggccttgt tgttaaattt agcgggcatg ataacgaatt gtcggcggcc ttgcattgcc
    15721 aatccggttg tccgtctcta cgctattgat attgaaaaaa ataaggagag taccgtgcgt
    15781 ataggtatcg atttaggcgg caccaaaact gaagtgattg cactgggcga tgcaggggag
    15841 cagttgtacc gccatcgtct gcccacgccg cgtgatgatt accggcagac tattgaaacg
    15901 atcgccacgt tggttgatat ggcggagcag gcgacggggc agcgcggaac ggtaggtatg
    15961 ggcattcctg gctcaatttc gccttacacc ggtgtggtga agaatgccaa ttcaacctgg
    16021 ctcaacggtc agccattcga taaagactta agcgcgaggt tgcagcggga agtgcggctg
    16081 gcaaatgacg ctaactgtct ggcggtttca gaagcagtag atggcgcggc agcgggagcg
    16141 cagacggtat ttgccgtgat tatcggcacg ggatgcggcg cgggcgtggc attcaatggg
    16201 cgggcgcata tcagcggcaa tggcacggca ggtgagtggg gacacaatcc gctaccgtgg
    16261 atggacgaag acgaactgcg ttatcgcgag gaagtccctt gttattgcgg taaacaaggt
    16321 tgtattgaaa cctttatttc gggcacggga ttcgcgatgg attatcgtcg tttgagcgga
    16381 catgcgctga aaggcagtga aattatccgc ctggttgaag aaagcgatcc ggtagcggaa
    16441 ctggcattgc gtcgctacga gctgcggctg gcaaaatcgc tggcacatgt cgtgaatatt
    16501 ctcgatccgg atgtgattgt cctggggggg gggatgagca atgtagaccg tttatatcaa
    16561 acggttccgc agttgattaa acaatttgtc ttcggcggcg aatgtgaaac gccggtgcgt
    16621 aaggcgaagc acggtgattc cagcggcgta cgcggcgctg cgtggttatg gccacaagag
    16681 taaaaaacgt aggcaattgg cgcatcatgc ctgatgcgac gcttgccgcg tcttatcagg
    16741 cctgcaaaat gtgccagaac cgcgtagggc ggataaggcg ttcacgccgc atccggcaat
    16801 aagtaatgaa caccgagact ataacctacc ccagtggttt cgccagcacc ggagtatccg
    16861 ccgcttgctg gcgcttatag cgaccataca gcagcaacga cgacatcgca gcaaacgaaa
    16921 gcagggcggc aggcagcgcc acgtaattat atgccagccc cagcgtcagc atcataccac
    16981 cgcaatatgc gccgacggcg ctaccgaggt taaacgctat ttgcccacct gcggcaccta
    17041 ataactctcc gcctttggcg ttttgtagta acaatatttg tagcggtgct gaaagggcaa
    17101 ataatcccgc gcaacaaata aaagcaaaaa taagcgacgt tgttttcatg ccgccgcaga
    17161 aaaagaacat cagcagtgcc agtacaatta taaagtcagt cactgctgca atgcgcagtg
    17221 gtgaataacg tcctgaaatc ctgccactta gcatatttcc cagcaccatc cctagcccaa
    17281 ctaacatcat aataaaggtc atcgccgttt ccgaaaaacc ggaaataaac atcatgtatg
    17341 gctttacgta gctgaaccag gcaaacacac ctgcgttgcc aaacatggtg gcggcgaaaa
    17401 ttaaccacgg ggccgggctg cgcaaaaagt gaaattgttc gcgcagcttt cctttcgcct
    17461 cgtcgcgaat atccggcacc caaaaataga ccgatgccat caccgcaata ttaaaaacag
    17521 cgatcaataa aaaggtgtaa cgccagctaa attcctgact taaatacgtt cccagcggaa
    17581 tgcccagcaa attggcgact gtcatcccgg aaaccatccc cgccacggcg gcggtgactt
    17641 ttccgggttt gataattttt gataacacga tcgcgccgac gccaaaaaat gcgccatgcg
    17701 gaaagccgga taccagccga ccaatggcga gcatcaggta agacgaagag agcgtgaaca
    17761 tggcgttgcc aatgacgcac aacgccacca gaaacaacaa gatatgtttg agtgagtagc
    17821 ggctggaaaa gagtgcgatg attggcgcac cgaccaccac tcccagtgca taatacgaga
    17881 tcatatgccc ggcagcagga atcgaaattc ctacgttatg cgccagctcc gtgagcacgc
    17941 ccataatgcc aaattcggcc atccccaaac caaacgtgcc cagagccaaa gataaaatga
    18001 cttttttcat accaccatca caaccaccag aacggctacc aatcaccgta gccaataaag
    18061 tgatagcttg caggataacg accagcaagg ccaagagata attcgcccct ctgtattcat
    18121 tatcctgctg aatagttatt tcactgcaaa cgtactttcc agtttgctgt agcccaggcc
    18181 gttgatcttt ttcactttga tctgcaccgg aatacgctct ttcatcgctt ctacgtggct
    18241 aatcacaccg atggttttgc cactggcgtt cagggcatcc agcgcatcaa gggcggtatc
    18301 cagcgtttcg ctatccagcg tgccaaaacc ttcatcaagg aacagcgagt caatacgtgt
    18361 tttatggctg accagatccg aaagcgccag cgccagcgcc agactaacga ggaaactttc
    18421 gccgccggaa agggtacggg tatcgcgtac cgcatctgcc tgccaggtat caacaacctc
    18481 gacttccagc gcctcgctgg ctttgcgctg taacagatag cgcccgtgca gccgggtaag
    18541 ttgctgatta gcgagatgga ctaaattatc cagcgtcagc ccctgggcaa acttgcggaa
    18601 tttatcgccc tctttggaac ctattagcga attcagatat ccccagtcct caacctgctg
    18661 cgtcatttga gcaatttgct gcattaaggt ttgttgttgc tgacggttat ctgcatcctg
    18721 cttcagctgc tggcgaatct cgccttgact cgtggtgttt tcacgcaact tttggtgagt
    18781 ttgcgctaac tcttgctgaa tctgctccac cgtcacagtg agagccaacc cgtcaggtcg
    18841 gtgttgttga tgctgtgcca gcgtttctgc tgtctgagtg accagcgttt gcgcctgacg
    18901 gcgctggttt tccagattct gcttgagctg ttccagctgc gttagtgttt gttcatccat
    18961 tagcgccgca aggaacgcct gctgatcgtc aaagacgctg gcctgtagcg cggtgtcaaa
    19021 ctgcgcctgg gctttttgca gactttgcgc cgccagaaca tcctgttgct gtaacgtctg
    19081 ctgctggctg tgtaatgcga gacattgttc atgaacctgc cgccagttat ccagcgccac
    19141 agtttcttcg ctgtgcggga gatcatcact ttgcggcaac gtttccagaa tcggcgtcag
    19201 ctgctgaata cggttttgca gcgtggttaa ttcgttctgg cgttgctgcc agctctgcgc
    19261 ttcttgctga cgtgtcgcca accagctctc ttcttcatct tcctgtggca atgtcagtgc
    19321 ataacccgcc aatgccgtta agagctgctg ctggcgttgt tcaatttgct gttgatactg
    19381 gataatttgc tgattatgcg cggcaatctg cccttgtaat tcatgtcgtt ggctgagtaa
    19441 ccgcagctgg cgtttgtgct catcttgtgc atccagccac ggttgaatat cgtcctgtgg
    19501 ctgcaaggtg atattgaggc tggccgtgac ggcttgccat tgttgagtaa gtgcttgctc
    19561 atcttgtcgg aggctttgcg cttcgttttc atcgcgctga agctgcttcg ttaatgcatc
    19621 cagttgcccg cgcagcgccg caccttcttc gccgagcttt ttaacttcgt tttccagcgc
    19681 cagtaatcga gactgattaa caccaggctc cagcgcctga tacgccttga ccgccgggtg
    19741 gctggtggaa ccacaaagtg gacaaggctg acccgcctgt aactgtgcac gctgggcttc
    19801 cagcgttttg atgcgcgctt cctgctcgca aatggttttc acatcggcaa gttgctgcgt
    19861 cttttcttta taacgctggc gcatttcgtt aagtgcgaca ttacgttgcg tctgttccag
    19921 agatccattc tggatagtga ccattaactg cgccagacgt ttttgttggg gaacaatctg
    19981 cccatgcagc gcgaccaggc gctgacgcag tgggcgttgc tcagcatgtt gcgccagggc
    20041 ggtagcaact tcatcggcgg ttaacgtcaa cgtgatcgcc gcaagcgcat taagtttttg
    20101 ctcagcatgg gttaactgtt gctgccattg ccgcagatgc tcgcgatcgc tggtttgttg
    20161 ggagaactgc gcacgccaac ccgccagttc gttgttccac tgacggaagc ggtcgtgttc
    20221 ctgtaaccag gtattcaggc tttgttgctg ctgctgtaat tctgctgact gcttcgccgc
    20281 gtggtggcga atgctcgcgc gaagcgccat tgtgctctgt aagcgagtat ttacttcttc
    20341 aatctgctgg cgagtatgcg ccagcgccgc gctgtgttct gcgatgcgtt cccagtgcgg
    20401 acgaagattt cgtgccggtt gtgccagact gagcgccgcc agttgaggtt gcgctttttc
    20461 ttcttcggct aacgcctgtt gcaaggcctg ctgacggcgg ctggcttctt gctgcaattc
    20521 gtccagacgc gttaaccagt ttagtgattg ttgttcttgc tgctgcgcgg taagtaactg
    20581 tttttcttcg tcagtaagta cctgcaaact cgctgtcagc gattgcactt gttccggcgt
    20641 gagcaacgcg acgccgctgg cctgcgcttg cagcttctcc agctctgtgc gggccgattt
    20701 gtgctgctca aaaaccatcg ccgagatttg cccgtagatt tcagtgccgg ttaactcctc
    20761 gagcaattcc gcgcgttctt tgggtttggc attcaggaag gcagcaaatt gcccctgcga
    20821 aagcagcatc gaacgggtga agcgcccgta atccagcccg gttaacgtcg ctgtcagttc
    20881 cagcttatct ttcactttgt cggcgagaat tttgccgtcg gcgcagcgcg ccagctctac
    20941 gcgtggcacc tgcaaattac cgtcgggttg gttacgcgcc cgattctggc tccagaatgc
    21001 acggtacgct tcacctttca cttcaaactc cacctccgcc agacattcgg cggtatcgcg
    21061 ggtcatgaga tcattttgcg attgtgaaac gttagagaga cgcggagttt cgtgatacag
    21121 cgccagacaa atggcgtcca gcagggtggt tttccccgca ccggttgggc cggtaatggc
    21181 aaacagcccg ttgctggcga acggctcgcg ggtgaaatca atcttccatt cgccttttaa
    21241 tgagttcagg tttttcaggc gcaggctgag aattttcatg cttcgtgttc tccggcgagg
    21301 gtatgcaacg tcgtggtgaa aagatgctgc agacgttgct gctgcgattc atccagttct
    21361 tccagtgcca gacggcgatt gaacacctct tcgacgctga gttcgctgag ggtttcacgc
    21421 tgttggctgg ctaatacacg ctcgcgctgt tcacgactcc gacgtaccag caatacttcg
    21481 acaggcaatg attcggctaa tgcctggatt ttgcgctgaa tatcatgcag atactcatca
    21541 gtagtgattt cgatatccag ccagacaggt ggctcctgcg atacatcgcg ccactgttcc
    21601 agctgtgcgg taatcgacgc cagatcgcct ttcagcaccg ccatgggttg agttaccggt
    21661 acgttcaggt tttccacgct ctctaatttg ccgtttgaaa atgtcaccag atggacatat
    21721 ttactcttac cgcattcatc aaaactcagt ggaatggggg aaccgcaata gcgaacatgt
    21781 tccatgccgc caataatctg tgcgcggtga atatgcccga gcgcgatgta gtcggctggt
    21841 ggaaagtttt gtgccggaaa cgcgtccagc gtgccaatat aaatgtcacg cacggcgtca
    21901 cttttactgg cacccacggt cgttaaatgt cccgtggcga tgatgggcag aggctgatcg
    21961 ccgcgcagtt tgcaggcatc ggcatagtgt tgttggtaat aatcggtaat cgctgccagt
    22021 aaatgctgct gtttttcaat accgttaagc cccgcctggc tggaaataat gtcacgcggg
    22081 cgtaaaaacg gaatggggca cagcactgcg cctggcgtcc cgtcgcgacg aggcaagatt
    22141 tgcggcgcat gtccggcgct ggcgaccacg gttgtattga ggaacgccat gatatcgcgc
    22201 gattcattca gcgtggcgac cgagtcatgg tttcctgcca gtaccaccag atgacagcca
    22261 gtttgctgta aattgacaac aaaacggttg tataacgtgc gggcgtaact gggcggcgag
    22321 ccggtatcga aaacatcacc agcaacaata atcgcatcca cctgatgggt ttgtgctgtc
    22381 tccagcagcc agtcaagaaa agcctgatgt tcagcttcgc ggcttttact gtagaagttc
    22441 tggccgagat gccagtctga ggtgtgaagg atgcgcataa cggttccctg gcgaaaaagc
    22501 atggtcgcga ttatacccaa acagatgtgc catttgcttt tttctgcgcc acggaaatca
    22561 ataacctgaa gatatgtgcg acgagctttt cataaatctg tcataaatct gacgcataat
    22621 gacgtcgcat taatgatcgc aacctattta ttacaacagg gcaaatcatg gcgagacgta
    22681 ttctggtcgt agaagatgaa gctccaattc gcgaaatggt ctgcttcgtg ctcgaacaaa
    22741 atggctttca gccggtcgaa gcggaagatt atgacagtgc tgtgaatcaa ctgaatgaac
    22801 cctggccgga tttaattctc cttgactgga tgttacctgg cggctccggt atccagttca
    22861 tcaaacacct caagcgcgag tcgatgaccc gggatattcc agtggtgatg ttgaccgcca
    22921 gaggggaaga agaagatcgc gtgcgcggcc ttgaaaccgg cgcggatgac tatatcacca
    22981 agccgttttc gccgaaggag ctggtggcgc gaatcaaagc ggtaatgcgc cgtatttcgc
    23041 caatggcggt ggaagaggtg attgagatgc agggattaag tctcgacccg acatctcacc
    23101 gagtgatggc gggcgaagag ccgctggaga tggggccgac agaatttaaa ctgctgcact
    23161 tttttatgac gcatcctgag cgcgtgtaca gccgcgagca gctgttaaac cacgtctggg
    23221 gaactaacgt gtatgtggaa gaccgcacgg tcgatgtcca cattcgtcgc ctgcgtaaag
    23281 cactggagcc cggcgggcat gaccgcatgg tgcagaccgt gcgcggtaca ggatatcgtt
    23341 tttcaacccg cttttaacgc cttgctcatc ggacgcagag cagggcttat gatttcttaa
    23401 ctggagtatc ttacgtgctg gaacggctgt cgtggaaaag gctggtgctg gagctgctac
    23461 tttgttgcct cccggctttc atcctgggtg cattttttgg ttacctgccc tggtttttgc
    23521 tggcatcggt aacaggactg cttatctggc atttctggaa tttattgcgc ctttcatggt
    23581 ggttgtgggt ggatcgcagt atgaccccgc caccggggcg tggtagctgg gaaccgctac
    23641 tatacggctt acaccagatg cagctgcgaa ataaaaaacg ccgccgtgaa ctgggcaatc
    23701 tgattaaacg ctttcgtagc ggcgcggagt cgctgcccga cgcggtggtg ctgaccacgg
    23761 aagagggcgg tattttctgg tgtaacggtc tggcgcaaca aattcttggt ttgcgctggc
    23821 cggaagataa cgggcagaac atccttaacc tactgcgtta cccggagttt acgcaatatc
    23881 tgaaaacgcg tgatttttct cgcccgctca atctggtgct caacaccggg cggcatctgg
    23941 aaattcgcgt catgccttat acccacaaac agttgctgat ggtggcgcgt gatgtcacgc
    24001 aaatgcatca actggaaggg gcgcggcgta acttttttgc caacgtgagc catgagttac
    24061 gtacgccatt gaccgtgtta cagggttacc tggagatgat ggatgagcag ccgctggaag
    24121 gcgcggtacg cgaaaaagcg ttgcacacca tgcgcgagca gacccagcgg atggaagggc
    24181 tggtgaagca gttgctaacg ctgtcgaaaa ttgaagccgc gccgacgcaa ttgctcaatg
    24241 aaaaggttga tgtgccgatg atgctgcgcg ttgttgagcg cgaggctcag actctgagtc
    24301 agaaaaaaca gacatttacc tttgagatag ataacggcct caaagtgtct ggcaacgaag
    24361 atcagctacg cagtgcgatt tcgaacctgg tctataacgc cgtgaatcat actccagaag
    24421 gcacgcatat caccgtacgc tggcagcgag tgccgcacgg tgccgaattt agcgttgaag
    24481 ataacggacc gggcattgca ccggagcata ttccgcgcct gaccgagcgt ttttatcgcg
    24541 ttgataaagc gcgttcccgg caaaccggcg gtagcggatt agggttagcg atcgtgaaac
    24601 atgctgtgaa tcatcacgaa agtcgcctga atattgagag tacagtagga aaaggaacac
    24661 gtttcagttt tgttatcccg gaacgtttaa ttgccaaaaa cagcgattaa tccgcctttg
    24721 tcatctttta ttgccataag ccagtcgatg ctggcttatt ttctttgcag tcaaaatacg
    24781 ggcgttagat tttacaacgg ttggtgattt tttgttcgca tgattagcca tgtctttttc
    24841 acggaaatag tgttttatac tggttggtga tttcttatcg ctatatacct ctggttttta
    24901 gatccctcct tgctttaaaa cgttataagc gtttaaattg cgcttcaggt gctgtcatac
    24961 tgactgcatt aacgcggtaa atcgaaaaac tattcttcgc cgcgccaggt tgggagtatt
    25021 tcccgctaaa attgtttaaa tataccgctg tatcatcccc agggattggc acaaaaattt
    25081 aacgttacaa caccacatcc acaggcagta tgatttatga cccatcaatt aagatcgcgc
    25141 gatatcatcg ctctgggctt tatgacattt gcgttgttcg tcggcgcagg taacattatt
    25201 ttccctccaa tggtcggctt gcaggcaggc gaacacgtct ggactgcggc attcggcttc
    25261 ctcattactg ccgttggcct gccggtatta acggtagtgg cgctggcaaa agttggcggc
    25321 ggtgttgaca gcctcagcac gccaatcggt aaagtcgctg gcgtgctgct ggcaacggtt
    25381 tgttacttgg cggtggggcc gcttttcgct acgccgcgta cagctaccgt ttcctttgaa
    25441 gtggggattg cgccgctgac gggtgattcc gcgctgccgc tgtttatcta cagcctggtc
    25501 tatttcgcta tcgttattct ggtttcgctc tatccgggca agctgctgga taccgtgggc
    25561 aacttccttg cgccgctgaa aattatcgcg ctggtcatcc tgtctgttgc cgctattgtc
    25621 tggccggcgg gttctatcag cacggcgact gaggcttatc aaaacgctgc gttttctaac
    25681 ggcttcgtta acggctatct gaccatggat acgctgggcg caatggtgtt tggtatcgtt
    25741 attgttaacg cggcgcgttc tcgtggcgtt accgaagcgc gtctgctgac ccgttatacc
    25801 gtctgggctg gcctgatggc gggtgttggt ctgactctgc tgtacctggc gctgttccgt
    25861 ctgggttcag acagcgcgtc gctggtcgat cagtctgcaa acggcgctgc tattctgcat
    25921 gcttacgttc agcacacatt tggcggcggc ggtagcttcc tgctggcggc gttaatcttc
    25981 atcgcctgcc tggtaacggc agttggcctg acctgtgctt gtgcagaatt ctttgcccag
    26041 tacgtaccgc tctcttatcg tacgctggtg tttatcctcg gcggcttctc gatggtggtg
    26101 tctaacctcg gcttaagcca gctgatccag atctccgtac cggtgctgac cgctatttat
    26161 ccgccgtgta tcgcactggt tgtattaagt tttacacgct catggtggca taattcgtcc
    26221 cgcgtgattg ccccgccgat gtttatcagc ctgctttttg gtattctcga cgggatcaaa
    26281 gcatctgcat tcagcgatat cttaccgtcc tgggcgcagc gtttaccgct ggccgaacaa
    26341 ggcctggcgt ggttaatgcc aacagtggtg atggtggttc tggccattat ctgggatcgc
    26401 gcggcaggtc gtcaggtgac ctccagcgct cactaaatca ctgaacattt gttttaacca
    26461 cggggctgcg atgccccgtg gttttttatt gtgttgatgg gttaggaatt gatggaaagt
    26521 aagaacaagc taaagcgtgg gctaagtacc cgccacatac gctttatggc actgggttca
    26581 gcaattggca ccgggctgtt ttacggttcg gcagacgcca tcaaaatggc cggtccgagc
    26641 gtgttgttgg cctatattat cggtggtatc gcggcgtata tcattatgcg tgcgctgggg
    26701 gaaatgtcgg tacataaccc ggccgccagc tctttctcgc gttatgcgca ggaaaacctc
    26761 ggcccgctgg caggttacat taccggctgg acctactgct ttgaaatcct aattgtcgcc
    26821 atcgccgatg tgaccgcttt tggtatctat atgggtgtct ggttcccgac ggtgccgcac
    26881 tggatttggg tactgagcgt ggtgctgatc atttgcgccg taaacctgat gagcgtgaag
    26941 gtattcggtg agctggaatt ctggttctcg ttctttaaag tcgccaccat catcatcatg
    27001 attgtcgccg gtttcggcat catcatctgg gggattggca acggcgggca accgaccggt
    27061 attcataacc tgtggagcaa cggcggcttc ttcagtaacg gctggcttgg catggtaatg
    27121 tcgttgcaaa tggtgatgtt tgcttacggt gggatcgaaa ttatcgggat taccgccggt
    27181 gaagcgaaag atcctgagaa atcgattccg cgtgcgatta actccgtgcc gatgcgtatt
    27241 ctggtgttct acgtcggtac gctgttcgtc attatgtcta tctacccgtg gaatcaggtt
    27301 ggcactgccg gtagcccgtt cgtgctgacg ttccagcata tgggcattac ctttgccgcc
    27361 agcattctta actttgttgt gctgaccgct tcgctgtcgg caattaacag tgacgtattt
    27421 ggcgtaggcc gtatgctcca cggtatggca gagcagggca gcgcaccgaa aattttcagc
    27481 aaaacgtcgc gtcgcggtat tccgtgggtt acggtgctgg tgatgactac cgcgctgctg
    27541 tttgcggtgt atctgaacta catcatgccg gaaaacgtct tcctggtgat cgcttcgctg
    27601 gcaaccttcg ccacggtatg ggtgtggatt atgatcctgc tgtcgcaaat cgccttccgt
    27661 cgccgtttgc cgccagaaga agttaaggcg ctgaaattta aagtgccggg tggggtagca
    27721 acgaccatcg gcgggctgat tttcctgctc tttattatcg ggttgattgg ttatcacccg
    27781 gatacgcgta tctcgctgta tgtcggtttc gcgtggattg ttgtgctgtt gattggctgg
    27841 atgtttaagc gtcgccacga tcgtcagctg gctgaaaacc agtaatcctt gcgttctgta
    27901 agccggttca ggaggaaatc ctgatccggc tattccgaaa gttatccgcc cccgtcctcc
    27961 tcccccaaat atccttcaga tgatgagtga tcctgcatta ggctatggca aggtgatcag
    28021 attttcatca caggggaatt atgatgttaa atgcatggca cctgccggtg cccccatttg
    28081 ttaaacaaag caaagatcaa ctgctcatta cactgtggct gacgggcgaa gacccaccgc
    28141 agcgcattat gctgcgtaca gaacacgata acgaagaaat gtcagtacca atgcataagc
    28201 agcgcagtca gccgcagcca ggcgtcaccg cagggcttca gccgaatgcc gccggcacga
    28261 ctggagcagt ttgccgtcga tgtaccggat atcggcccac aatgggctgc ggatcagatt
    28321 ttttatcaga tcttccctga tcgttttgcg cgtagtcttc ctcgtgaagc tgaacaggat
    28381 catgtctatt accatcatgc agccggacaa gagatcatct tgcgtgactg ggatgaaccg
    28441 gtcacggcgc aagcgggcgg atcaacgttc tatggcggcg atctggacgg gataagcgaa
    28501 aaactgccgt atctgaaaaa gcttggcgtg acagcgctgt atctcaatcc ggtgtttaaa
    28561 gctcccagcg tacatcaata cgataccgag gattatcgcc atgtcgatcc gcagtttggc
    28621 ggtgatgggg cgttgctgcg tttgcgacac aatacgcagc agctgggaat gcggctggtg
    28681 ctggacggcg tgtttaacca cagtggcgat tcccatgcct ggtttgacag gcacaatcgt
    28741 ggcacggggg gagcttgtta caaccctgaa tcgccctggc gcgactggta ctcgtttagt
    28801 gatgatggca cggcgctcga ctggcttggc tatgccagct tgccgaagct ggattatcag
    28861 tcggaaagtc tggtgaatga aatttatcgc ggggaagaca gtattgtccg ccattggctg
    28921 acagcgccgt ggagtatgga cggctggcgg ctggatgtgg tgcatatgct gggggaggcg
    28981 ggtggggcgc gcaataatat gcagcacgtt gctgggatca ccgaagcggc gaaagaaacc
    29041 cagccggaag cgtatattgt cggcgaacat tttggcgatg cacggcaatg gttacaggcc
    29101 gatgtggaag atgccgccat gaactatcgt ggcttcacat tcccgttgtg gggatttctt
    29161 gccaataccg atatctctta cgatccgcag caaattgatg cccaaacctg tatggcctgg
    29221 atggataatt accgcgcagg gctttctcat caacaacaat tacgtatgtt taatcagctc
    29281 gacagccacg atactgcgcg atttaaaacg ctgctcggtc gggatattgc gcgcctgccg
    29341 ctggcggtgg tctggctgtt cacctggcct ggtgtaccgt gcatttatta cggtgatgaa
    29401 gtgggactgg atggtaaaaa cgatccgttt tgccgtaaac cgttcccctg gcaggtggaa
    29461 aagcaggata cggcgttatt cgcgctgtac cggcgaatga ttgtgctgcg taagaaaagt
    29521 caggcgctgc gtcgtggcgg ctgtcaggtg ctgtatgcgg aagataacgt agtggtattt
    29581 gtccgcgtgc tgaatcagca acgtgtactg gtggcaatca accgtggcga ggcctgtgaa
    29641 gtggtgctac ccgcgtcacc gtttctcaat gccgtgcaat ggcaatgcaa agaagggcat
    29701 gggcaactga ctgacgggat tctggctttg cctgccattt cggctacggt atggatgaac
    29761 taacgtttta taacgccttg tgtgacgcct gcgccatcat ccgcggataa aactgccaga
    29821 agcgggttcc gagggcggta taatgggcgt ttaaatcgta ccaggagtca cgcagggcat
    29881 ccagacgtgg gcgacggctt gccatgccgt ttaacacgtt ctggatgaaa tccatatcgc
    29941 gatagcgcac cagccactgc tctgaccaca agtaattgtt tagattgata aaacgtggcg
    30001 gtgagtccgg caaaatcgtc atcacttgct tgcgggcata acagataaat tcctgtagcg
    30061 gaaagtccgg cgacagctgc gaccagtggc gggaaagaaa gtgatcccac atgacatcca
    30121 gcgtaatagg cgcaacgcgg cgcgtttcac gacgaaacca ctcccgtgct tcgcggactt
    30181 ccggcagatt gtcagtcaat acgtcgatac gtcgatgcat atgaatgcca gccacgacgt
    30241 cgggcggaaa actttcttca ggatttccgc gtacgaaatc agccagtaaa ttgccggaaa
    30301 gcgagctttc cgcgagatgg gctaaatgca ggtgagctaa aaaattcatc gattatattc
    30361 tatccaaagg ggggtaaagg ttgcagggag agcgccccgg cactagacta cccgcctctt
    30421 attttagtct gagtcagtgt catgcgcgtt accgatttct tctttgaatt gcccgaatcc
    30481 ctgattgccc actaccccat gcctgaacgc agtagctgtc gtttactgtc gctggacggg
    30541 cctacgggcg cgctgacgca cggtactttc accgatttac tcgataagct caaccccggc
    30601 gatcttctgg tttttaataa tactcgcgtg atcccggcgc gcctgtttgg gcgtaaagcc
    30661 agcggcggca agattgaagt gctggttgag cggatgctcg acgacaaacg cattcttgcg
    30721 catattcgcg cctcgaaagc gccaaaacct ggcgcagaac tgctgctggg cgatgacgaa
    30781 agtattaacg caacaatgac cgcgcgccac ggcgcactgt ttgaagtcga attcaatgat
    30841 gatcgttcgg tactggatat cctcaacagt atcgggcata tgccgctgcc gccgtatatc
    30901 gaccgtccgg acgaagacgc tgaccgcgaa ctttatcaaa ccgtttatag cgaaaaaccg
    30961 ggcgcggttg cagccccgac cgctggtctg cattttgacg agcctttgct ggaaaaattg
    31021 cgcgccaaag gcgtggagat ggcgtttgtg acgttgcacg ttggtgcggg caccttccag
    31081 ccggtgcgcg tcgacaccat tgaagatcac atcatgcact cggaatacgc tgaagtaccg
    31141 caggatgtgg tagacgcggt actggcggcg aaagcgcgcg gtaaccgggt gattgcggtt
    31201 ggcaccactt cagtacgttc gctggaaagc gcggctcagg cagcgaaaaa cgatctcatt
    31261 gaaccgttct tcgacgatac ccaaatcttt atctatccgg gcttccagta caaagtggtc
    31321 gatgcgctgg tgacgaactt ccacttgcca gagtcgacgc tgattatgct ggtttcggcc
    31381 tttgccggtt atcaacacac catgaacgcc tataaagcag cggtagaaga gaaatatcgc
    31441 ttttttagtt acggtgatgc gatgtttatt acgtacaatc cgcaggcaat taatgagcgc
    31501 gtcggggagt aattccgcgg cgctggttta aaacgttgga ctgtttttct gacgtagtgg
    31561 agaaaaaatg aaatttgaac tggacaccac cgacggtcgc gcacgccgtg gccgcctggt
    31621 ctttgatcgt ggcgtagtgg aaacgccttg ttttatgcct gttggcacct acggcaccgt
    31681 aaaagggatg acgccggaag aagttgaagc cactggcgcg caaattatcc tcggcaacac
    31741 cttccacctg tggctgcgcc cgggccagga aatcatgaaa ctgcacggcg atctgcacga
    31801 ttttatgcag tggaaggggc cgatcctcac cgactccggg ggcttccagg tcttcagcct
    31861 tggcgatatt cgtaaaatca ccgaacaggg cgtgcacttc cgtaacccga tcaacggcga
    31921 tccgattttc ctcgatcctg aaaaatcaat ggagattcag tacgatcttg gttcggatat
    31981 cgtcatgatc tttgatgagt gtacgccgta tcctgctgac tgggattacg caaaacgctc
    32041 catggagatg tctctgcgtt gggcgaagcg tagccgtgag cgttttgaca gtctcggaaa
    32101 caaaaatgcg ctgtttggta tcattcaggg cagcgtttac gaagatttac gtgatatttc
    32161 tgttaaaggt ctggtagata tcggttttga tggctacgct gtcggcggtc tggctgtggg
    32221 tgagccgaaa gcagatatgc accgcattct ggagcatgta tgcccgcaaa ttccggcaga
    32281 caaaccgcgt tacctgatgg gcgttggtaa accagaagac ctggttgaag gcgtacgtcg
    32341 tggtatcgat atgtttgact gcgtaatgcc aacccgcaac gcccgaaatg gtcatttgtt
    32401 cgtgaccgat ggcgtggtga aaatccgcaa tgcgaagtat aagagcgata ctggcccact
    32461 cgatcctgag tgtgattgct acacctgtcg caattattca cgcgcttact tgcatcatct
    32521 tgaccgttgc aacgaaatat taggcgcgcg actcaacacc attcataacc ttcgttacta
    32581 ccagcgtttg atggcgggtt tacgcaaggc tattgaagag ggtaaattag agagcttcgt
    32641 aactgatttt taccagcgtc aggggcgaga agtaccacct ttgaacgttg attaatatta
    32701 ataatgaggg aaatttaatg agctttttta tttctgatgc ggtagcggca acgggtgcac
    32761 cggcgcaagg tagcccgatg tctttgattt tgatgctggt ggtattcggt ctgattttct
    32821 atttcatgat cctgcgtcca cagcagaagc gcaccaaaga acacaaaaag ctgatggact
    32881 ccattgccaa aggtgatgaa gttctgacga acggtggcct ggttggtcgc gtaaccaaag
    32941 tagcggaaaa cggctacatt gctatcgcgc tgaatgacac cactgaagta gttattaaac
    33001 gtgacttcgt agctgccgtc ctgccgaaag gcaccatgaa ggcgctgtaa ttaaaatttt
    33061 tccctaaggg aattgccgtg ttaaaccgtt atcctttgtg gaagtacgtc atgctgatcg
    33121 tggtgattgt catcggtctg ctgtatgcgc ttcccaacct gtttggtgag gatccggctg
    33181 ttcagatcac tggtgcgcgc ggagtcgccg ccagtgagca aacgctgatc caggtccaga
    33241 aaacgttaca agaagaaaaa ataactgcta agtctgtggc actggaagag ggcgctattc
    33301 ttgcgcgctt cgactccact gacacccagc tgcgcgctcg tgaagcatta atgggcgtta
    33361 tgggtgacaa atacgtcgtg gcgcttaacc ttgccccggc aacgccgcgc tggctggcag
    33421 ctattcacgc tgagccgatg aagctcggcc ttgacctgcg tggcggcgtt cacttcctga
    33481 tggaagtgga tatggacacc gcgcttggca aactccagga acaaaatatc gatagcctgc
    33541 gcagcgatct gcgtgaaaag ggcatcccgt ataccaccgt tcgtaaagaa aacaactacg
    33601 gcctgagcat tactttccgc gatgctaaag ctcgtgatga agccattgcg tatctgagca
    33661 agcgccatcc ggacctggtg attagtagcc agggcagcaa ccagctgcgt gcggtaatga
    33721 gcgatgctcg tctgagtgaa gcgcgtgaat atgcggtgca gcagaacatc aatatcctgc
    33781 gtaaccgtgt aaaccaactt ggcgtagcgg agccggtggt tcagcgtcag ggtgctgacc
    33841 gtatcgttgt tgaactgcca ggtattcagg acactgcgcg tgcgaaagag attctgggtg
    33901 cgacggcaac gctggaattc cgtctggtaa acaccaacgt tgaccaggcc gctgcggcat
    33961 ccggtcgcgt accgggcgac tctgaagtga aacagacccg cgaaggtcag ccagttgtgc
    34021 tgtacaaacg cgtaattctg accggtgacc atatcaccga ctccacttcc agccaggacg
    34081 aatacaacca accgcaggtt aacatctcgc tcgatagcgc tggtggtaac atcatgtcta
    34141 acttcactaa ggacaacatc ggcaaaccga tggcaaccct gtttgtggag tacaaagaca
    34201 gcggtaagaa agatgcaaat ggtcgtgcgg ttctggtgaa acaggaagag gtgattaaca
    34261 tcgccaacat ccagtctcgt ctgggtaaca gcttccgtat caccggcatc aacaacccga
    34321 acgaagcccg tcagctgtca ctgctgctgc gtgccggtgc gttgatcgcg ccgattcaga
    34381 ttgttgaaga acgtaccatt ggcccaaccc tgggtatgca gaacattgaa caggggctgg
    34441 aggcttgcct tgccggtctg ctggtttcta ttctgttcat gatcatcttc tataagaagt
    34501 ttggtctgat tgcgaccagt gctctgattg ccaacttgat cttaatcgtc ggcattatgt
    34561 cgctgttgcc aggcgcaacg ctgagtatgc caggtatcgc gggtatcgtc ttaacccttg
    34621 cggtggcggt cgatgcgaac gtactgatca acgaacgtat taaagaagag ttgagcaacg
    34681 gacgtactgt tcaacaggca attgatgaag gttatcgtgg cgcattcagt tctatcttcg
    34741 atgcgaacat caccacgctg attaaagtca tcatcctgta cgcagtgggt accggggcaa
    34801 ttaaagggtt cgcgattact accggtatcg gtgtggcgac gtcgatgttt accgcgattg
    34861 tcggtacgcg tgccatcgta aacctgctat atggcggcaa gcgcgtcaag aagctgtcaa
    34921 tctgaggagt gcgatgtggc acaggaatat actgttgaac aactaaacca cggccgtaaa
    34981 gtctatgact ttatgcgctg ggactactgg gctttcggca tctctggtct gctgttaatc
    35041 gccgctatcg ttattatggg cgtgcgcggc tttaactggg ggctggattt caccggtggt
    35101 acggttatcg aaattacgct cgaaaaaccg gctgaaattg acgtaatgcg tgatgcattg
    35161 caaaaagccg gttttgaaga gccaatgctg caaaactttg gtagcagcca cgacatcatg
    35221 gtccgtatgc cgcctgctga aggcgaaacc ggcggtcagg tgctgggcag ccaggttctg
    35281 aaggtgatta acgaatccac caatcagaat gcagcagtga agcgtattga gttcgtcggt
    35341 ccgagcgtgg gggcagacct tacgcaaacc ggtgcgatgg cgttgatggc ggcgctgctg
    35401 tctatccttg tgtacgtagg ttttcgcttt gagtggcgac tggcggcagg ggttgttatt
    35461 gcgctggcgc acgacgttat cattacgctg ggtattttgt cgttattcca tatcgagatt
    35521 gacctgacca ttgtggcatc gttgatgtcg gttatcggtt actcgcttaa cgacagtatc
    35581 gtggtatcgg accgtattcg tgaaaacttc cgcaagatcc gtcgcggtac gccttacgaa
    35641 atctttaacg tgtccttgac ccagacgctg caccgtacct tgatcacatc cggtactacc
    35701 ttgatggtta tcctgatgct gtacctcttc ggtggtccgg tactggaagg cttctcgctg
    35761 accatgctta tcggtgtttc catcggtact gcatcttcca tctatgtggc atctgcgttg
    35821 gctctgaaac tgggtatgaa gcgcgaacac atgttgcagc agaaagtgga aaaagaaggg
    35881 gcggatcagc cgtcaattct gccgtaatca agttcccgtt gatgttgaaa atcccggtca
    35941 gaagatcggg attttttttg atgtatggag attgcgaaaa tccccgcatc ttgggaaact
    36001 gcgcgtaacc ctacatttca tccaggtaac tcttcatggc tatcatccca aaaaactatg
    36061 cgcggttaga aagcggctat cgcgaaaaag cattaaaaat atatccgtgg gtctgcggtc
    36121 gctgttcccg cgagtttgtt tattccaacc tgcgtgaact taccgttcac cacattgatc
    36181 acgaccatac caataacccg gaagatggca gtaactggga attgctttgt ctctattgcc
    36241 acgatcatga gcattcgaaa tataccgaag cggatcagta tggtacgacc gttatcgcag
    36301 gggaagatgc gcagaaagat gtcggtgaag cgaagtacaa cccattcgct gacctgaaag
    36361 cgatgatgaa caagaagaag tgattaaaac gtaaaattgc ctgatgcgct acgcttatca
    36421 ggcctacgtt atttcagcaa tatattgaat ttacgtgctt ttgtgggccg gacaaagcgt
    36481 ttacgccgca tccggcatga acaaagctca cgttgttaac aatcagaaat gccgggaata
    36541 aatcccggca ttttcataat cagaagttgt aacctactac caggtaacca ccccagccgg
    36601 tagagcgaac gttgaagttg ccgttgccga agttcagttc tgcatcgtcg ttccactgac
    36661 caccgtcgtg ccagtaacga gctacgacag agtagtgcca gtgatcgtag ttcagagcca
    36721 gaatatggct ggaagcgata gagttattag tacgggtctt aataccgttg attgcgttac
    36781 cgctgtcatc ccctaaatcg gaaccccagt cgaagttggt gaagccgatg tagctcagct
    36841 gaccgcccca cagatcggta atcggcacaa agtatttaat tttgaaacgg taaccgtccc
    36901 actcgttttc gttcgctgcg ccatagttct gccactggta tttcgcatag acgttcatgg
    36961 acaggctcat cggcagacca gtatcgatgt cggtacccag acccatgtac caggtgctct
    37021 ggcgaccatt tttattacga cccatgtcgt aaatgtagtt gttcgcgaag taccactctt
    37081 tgaacggacc gaagttaagg tcagtattgg tcagcttgtc gatggagaaa cgtggttcga
    37141 tttccataaa cagcggagaa ccgtggttcc agataccttt agcatcggag ttaccgccga
    37201 agaataccgg cgcatccgca taaccataga agtcgaacca gtctttttta gcgaatgctt
    37261 cgtactcaag gtaggtatcg ttgcggatct gcggtccgaa acgggtgtga tagcttccga
    37321 caacgttaac gctctggtgc caccagtcgg aaagatactg cggtttgtcg ttttcagctg
    37381 cgttgacagt aaaagacgaa gagagcgcca gtaccgcacc ggctgccagt aatgtttttt
    37441 tcatatgtat gccactgttt gaaaatccct tgcgggagtg aaaaaggcgc aaattgcgtt
    37501 tctaaatatt tcgtatacag aggagcctat tataaaaatc attgctcaca aaaatatgtt
    37561 tcgtttcaca gttctatcat ttacgtaatc gattgcgttc acgtttacac acattcgggc
    37621 ggggattgta ctgactttcg cccttgttgc aaacttttac tatcaatcca ggtgatgtaa
    37681 gcagagtaac aaaatgacgg ggaaagatgt tgcgggacgc acaaaatcgt cccgaaatac
    37741 gtttactgca taacaggttg aatgtcgtgg atacgtacaa agcctaactg atccacagaa
    37801 atccccttta attgtaacgg aatatcaaca tcgctggggg cgaggacgct ggcaggggca
    37861 ttaatcaatt gattctgcac attgatttcc tgaaagttgt ctattgttcc ctgaatttgc
    37921 ccatattcaa cagttccgct gaatgcgggc aagggatcat tcgactcacc ctgaatacgt
    37981 agtgtaaggg tggtgccatc tgtatcaggc gtaatattca ccagcgacat acgtaaagta
    38041 ccgatctggc tttccagtct tgccggtgtt ttcgctccag gcagaaggta acccccactg
    38101 ctggattttg cattcagtct gttttgctga gtgattttga ctgtttcttg attgagttgc
    38161 gtcatctcct ggttcagcgt gctgacgctg tgtttcatct gtcgcacttc actttgctgc
    38221 acacaggcgc taaggctgaa caggcttccc agcaggagca gtcgaaaaac gttagtattc
    38281 ataggtcgtc cctttctcgt cgcaattagc ctaatggtag agggtaaaag cagcgaaagc
    38341 atcgatcctt tatctcaaaa gcgttgcgcc tttgttgtat cgtcagttca gggtaaaata
    38401 gatttccgtt aaccacctgg tcaggacgcc gtatgcattg cccattctgt ttcgccgtgg
    38461 acactaaggt aattgactct cgtctcgtgg gcgagggttc atccgtacgc cgccgtcggc
    38521 agtgtctggt gtgtaatgaa cgtttcacca cctttgaagt ggcggagctg gttatgccgc
    38581 gtgttgtaaa aagcaacgac gtgcgtgaac cgtttaatga agagaaattg cgtagcggaa
    38641 tgctgcgggc gctggaaaaa cgtccggtga gttccgatga cgttgaaatg gcaatcaatc
    38701 atattaaatc gcagctgcgc gccaccggtg agcgcgaagt accgagcaag atgattggca
    38761 atctggtgat ggagcaattg aaaaagctcg ataaagtcgc ctatatccgt tttgcctctg
    38821 tctaccgcag tttcgaagat atcaaagaat ttggcgaaga gatcgcgcgc ctggaggact
    38881 aagccgtgca ggacgagtat tacatggcgc gggcgctaaa gctggcgcaa cgaggacgtt
    38941 ttaccaccca ccccaaccca aatgtcgggt gcgtcattgt caaagatggc gaaattgtcg
    39001 gtgaaggtta ccatcaacga gcgggtgaac cacatgccga agtacacgcg ttgcgtatgg
    39061 cgggtgaaaa agccaaaggt gcaacggcgt atgtgacact cgaaccttgc agccatcacg
    39121 gccgtacgcc gccttgctgt gatgctttaa ttgccgcagg tgtggcgcgc gtggttgcct
    39181 cgatgcaaga tcctaacccg caggtcgctg ggcgtggact ttaccgtctg caacaggctg
    39241 gcattgacgt cagccacggc ctgatgatga gtgaagccga gcaattgaat aaaggctttc
    39301 tcaagcggat gcgcaccggc tttccttata ttcagttaaa acttggcgca tcgcttgatg
    39361 gtcgcacggc gatggcgagc ggcgaaagcc agtggatcac ttcgccccag gcgcggcgtg
    39421 atgtacaacg actgcgcgcg caaagtcatg ccattttaac cagcagcgcc acggtgctgg
    39481 cggatgatcc tgccttaacg gtgcgttggt ccgaactgga tgaacaaact caggcgctct
    39541 acccgcaaca aaatctccgc cagccggtac gtattgtgat tgatagccaa aatcgcgtga
    39601 cgccggaaca tcacattgtg cagcagcccg gcgaaacctg gttcgcgcgt acgcaggaag
    39661 attctcgtga gtggccggaa acggtgcgta ccttgctgat tccagagcat aaaggtcatc
    39721 tggatctggt tgtactgatg atgcaactgg gtaaacagca gattaacagc atctgggggg
    39781 aagcggggcc aacgctcgct ggcgcattgc tgcaggcggg tttagtcgat gagctgattg
    39841 tctatatcgc acctaaacta ttaggcagcg acgcccgtgg attatgcacc ctgccagggc
    39901 ttgagaaatt agccgacgcc ccccaattta aattcaaaga gatacgtcat gtaggcccgg
    39961 atgtttgcct gcatttagtg ggtgcatgat ctcccggctc gaaagggaag cagcgcacga
    40021 aatattatgc taaaatccgc ccccctgcgg ggccatactc gaacccgaag gaagaaaatg
    40081 aacattattg aagctaacgt tgctaccccg gacgctcgcg tcgccatcac catcgcgcgt
    40141 ttcaacaact ttatcaatga cagcctgctg gaaggtgcaa ttgacgcact gaaacgtatc
    40201 ggtcaggtaa aagatgaaaa cattaccgtt gtttgggtgc ctggtgccta tgagctgccg
    40261 ctggcggcgg gtgcactggc taaaaccggt aaatacgacg cggtgattgc gctgggtacg
    40321 gttattcgtg gtggcactgc ccattttgaa tatgtcgctg gtggtgcaag caacggcctg
    40381 gcgcatgttg cccaggacag cgaaattccg gttgcttttg gggttctgac cactgaaagc
    40441 attgaacaag cgatcgaacg tgctggcacc aaagctggca acaaaggtgc agaagctgca
    40501 ctgaccgcgc ttgaaatgat taatgtattg aaagccatca aggcctgaaa ttagtaaggg
    40561 gaaatccgtg aaacctgctg ctcgtcgccg cgctcgtgag tgtgccgtcc aggcgctcta
    40621 ctcctggcag ttgtcccaga acgacatcgc tgatgttgaa taccagttcc tggctgaaca
    40681 ggatgtaaaa gacgttgacg tcctgtactt ccgtgagctg ctggccgggg tggcgactaa
    40741 taccgcatac ctcgacggac tgatgaagcc atacctgtcc cgtctgctgg aagaactggg
    40801 acaggtagaa aaagcagtac tgcgcattgc gctgtacgaa ctgtctaaac gtagcgatgt
    40861 gccatacaaa gtggccatta acgaagcgat cgaactggcg aaatcgttcg gcgcagaaga
    40921 cagccataag ttcgtcaacg gtgtactcga taaagcagca cctgtgattc gccctaacaa
    40981 aaagtaatat ccaggccggt agattcacgg aagaccgttc catgatcgcc ggccttttct
    41041 tttttacctg ctgaggcata acgtatggca tgtggcgagt tctccctgat tgcccgttat
    41101 tttgaccgtg taagaagttc tcgtcttgat gtcgaactgg gcatcggcga cgattgcgca
    41161 cttctcaata tccccgagaa acagaccctg gcgatcagca ctgatacgct ggtggcgggc
    41221 aaccacttcc tccctgatat cgatcctgct gatctggcgt ataaagcact ggcggtgaac
    41281 ctaagcgatc tggcagcgat gggggccgat ccggcctggc tgacgctggc attaaccttg
    41341 ccggacgtag acgaagcgtg gcttgagtcc ttcagcgaca gtttgtttga tcttctcaat
    41401 tattacgata tgcaactcat tggcggcgat accacgcgtg ggccattatc aatgacgttg
    41461 ggtatccacg gctttgttcc gatgggacga gccttaacgc gctctggggc gaaaccgggt
    41521 gactggatct atgtgaccgg tacaccgggc gatagcgccg ccgggctggc gattttgcaa
    41581 aaccgtttgc aggttgccga tgctaaagat gcggactact tgatcaaacg tcatctccgt
    41641 ccatcgccgc gtattttaca ggggcaggca ctgcgcgatc tggcaaattc agctatcgat
    41701 ctctctgacg gtctgatttc cgatctcggg catatcgtga aagccagcga ctgcggcgta
    41761 cgtattgacc tggcattgct gccgttttct gatgcgcttt ctcgccatgt tgaaccggaa
    41821 caggcgctgc gctgggcgct ctctggcggt gaagattacg agttgtgttt cacggtgccg
    41881 gaactgaacc gtggagcgct ggatgtggct ctcggacacc tgggcgtacc gtttacctgt
    41941 atcgggcaaa tgaccgccga tatcgaaggg ctttgtttta ttcgtgacgg tgaacctgtt
    42001 acgttagact ggaaaggata tgaccatttt gccacgccat aaagatgtcg cgaaaagtcg
    42061 cctgaagatg agtaatccgt ggcatctact tgctgtcgga ttcggaagtg gattaagccc
    42121 gatcgttcct gggacgatgg gctcgctggc agcgattccg ttctggtatc tgatgacctt
    42181 tttgccctgg cagctctact cgctggtggt gatgctgggg atctgtatcg gcgtctatct
    42241 ttgtcatcag accgcaaaag atatgggcgt gcacgatcac ggcagcattg tctgggacga
    42301 atttattggt atgtggatca cgctcatggc gctgccgacc aatgactggc agtgggttgc
    42361 cgccgggttt gtgattttcc gtattctgga tatgtggaaa ccgtggccga tccgctggtt
    42421 tgatcgcaat gtgcatggcg gcatggggat catgatagat gatattgtcg ccggggtgat
    42481 ctccgctggc atcctgtact ttattggtca tcactggccg ctgggcattc tgtcgtagtt
    42541 gtgcaccgat gcctgatgtg acgcttgttg cgtctcatca ggcctggact cttatttaaa
    42601 tcctactacc ggatgcggtt tatacggcgt ttccagttcg gcaatctgtt ccggcttcaa
    42661 agtgatatcc accgcgttca atagctcatc aagctgttct tcccgcgatg taccgataat
    42721 cggtgcggca atgcccggtt tactcaacaa ccaagccagc gcaacttgtg ctcgtgttgc
    42781 accgagttct tcactgacgc ccgttaaccg ctctgcgatc tgcgcgtcat tttcatcgct
    42841 ttctttatag agatttttcc ccacctcatc agacaccagt cgtgcggtag tttctcccca
    42901 cggacgcgtc agtcgccccc gcgccagcgg gctccacgga atcaccgcca cgccctcctg
    42961 ataaaacagt ggcagcatct cgcgctcttc ttcgcgataa atcagattgt agtgatcctg
    43021 catactgaca aactgcgccc agccgtgctg tttttggagt tccagtgcct gagcaaactg
    43081 cgaagcgtgc attgatgacg cgccgatata acgcgctttc ccggctttta ccacgtcgtt
    43141 cagggcttcc agcgtctctt cgatcggcgt gttgtaatcc cagcgatgaa tttgcaggat
    43201 atcgacataa tccatgccga gacgtcgcag gctgtcgtcg atagagcgca aaatttgtgc
    43261 acgggataat ccttccggta aatcaccaac gcgatggaac actttggtgg caacgaccac
    43321 gtcttcacga cgggcgaaat cccgcagtgc gcgaccaacg atctcttcgc tgctaccatc
    43381 ggaatagcta ttggcggtat caaagaaatt tatgccgcct tccagtgcgc gtttaattat
    43441 gggacggctg ctctcttccg gcagtgtcca tgcgtgatta ccacgatctg gctcgccaaa
    43501 ggtcatacag ccgaggcaaa gtcgggaaac gcgaaggtcg gtttttccta aggggttgta
    43561 ttgcatgctg ccactcctgc catgaataat ttcttaagca tagcaggagt ggagtaggga
    43621 ttatgccagc caggccttga ttttggcttc cataccggcg gcatcgaggc cgagttcggc
    43681 gcgcatttct tcctgcgttc cttgcggaat aaagaagtca ggcaggccaa tgttcagcac
    43741 ggggactggt ttacgatggg ccattagcac ttcgttcact ccgctgcctg caccgcccat
    43801 aatggcgttt tcttctacgg taaccagtgc ttcatgactg gcggccattt ccagaattaa
    43861 cgcttcatca agcggtttca caaaacgcat atcgaccagc gtggcgttca gcgattcggc
    43921 gactttcgcc gcttctggca tcagcgtacc aaagttaagg atcgccagtt tctcgccacg
    43981 acgcttcaca atgcctttgc caattggtag tttttccagc ggcgtcagtt ccacgccgac
    44041 cgcgttgcca cgcgggtagc gcaccgctga cgggccatcg ttatagtgat agccggtata
    44101 gagcatctgg cgacattcgt tttcatcgct cggggtcata atgaccattt ccggtatgca
    44161 gcgcaggtaa gagagatcaa aagcaccctg atgggtttga ccgtcagcac caacaatgcc
    44221 cgcgcggtcg atggcgaaca ggaccggaag cttttgaatt gccacgtcat gcagcacctg
    44281 atcataggcg cgttgcagga aagtggagta gatcgcgaca atgggtttgt acccaccaat
    44341 cgccagaccg gcggcaaagg tcactgcgtg ttgctcggca attgccacgt cgaagtagcg
    44401 atccgggaat ttacgagaaa actcgaccat gccggaacct tcacgcatcg ccggagtaat
    44461 cgccatcagc ttgttatctt tcgccgccgt ttcgcacaac cagtcgccaa agatttttga
    44521 atagctcggt aaaccgccgc tacttttcgg caaacaaccg ctggagggat caaatttagg
    44581 cacggcgtgg aaagtgattg ggtctttttc tgccggttca taaccacgac cttttttggt
    44641 catgatatgc aggaactgcg ggcctttcag gtcacgcatg ttcttcagcg tggtgataag
    44701 ccccagcaca tcgtgaccgt caaccgggcc gatgtagtta aagcccagct cttcaaacaa
    44761 cgtgccaggg actaccatgc ctttaatatg ttcttcggta cgtttgagca gctctttaat
    44821 gggtggcacg ccagagaaaa cttttttccc gccttcgcgc agtgaagagt aaagcttacc
    44881 ggaaagcagc tgcgccagat ggttgttgag cgcgccgaca ttttcggaaa tcgacatttc
    44941 gttgtcgttg aggaccacca gcatatcagg acggatatcg cccgcgtgat tcatcgcttc
    45001 aaacgccatg cctgcggtaa tcgcgccatc gccgattaca cagacggtac ggcgattttt
    45061 gccttctttc tcggcagcaa ccgcaatacc aattccggca ctgatggagg ttgatgaatg
    45121 cccgacgctt aatacgtcat attcgctttc gccgcgccac gggaacgggt gcaggccgcc
    45181 tttctgacgg atggtgccga ttttgtcgcg gcgtccggtc aaaattttat gcggataagc
    45241 ctgatgcccc acatcccaaa tcaattggtc aaacggggtg ttgtagacat agtgcagcgc
    45301 cacggtcagt tcgaccgtgc ccagcccgga ggcgaagtgc ccgctggaac ggctcacgct
    45361 gtcgagtaaa tagcggcgca gttcgtcgca gagtttcggt aaactctctt tcggcaacag
    45421 tcgtaactcc tgggtggagt cgaccagtgc cagggtcggg tatttggcaa tatcaaaact
    45481 catcaggggc ctattaatac ttattgttta tttattacgc tggatgatgt agtccgctag
    45541 cgcttccagt gccgaggtat cgggtgactg ttcagccagt tgtttcagcg actgacgggc
    45601 atcgtcgatc agatcccggg ctttcttccg ggcttgctca agacccagaa gtgcagggta
    45661 ggtactttta ccaagttgct ggtcggcacc ctggcgtttt cccaacgttg cagtatctcc
    45721 taccacatcc aggatgtcat cctgaacctg gaaggcaagg ccgatgctct ctgcgtactt
    45781 gtcgagtact ggcagagcac gacgcccttt atctccggcg cttaatgcac caaggcgaac
    45841 ggcggcgcga atcaatgcgc cggttttatg acgatgaata cgctcaagcg cgtccagagg
    45901 tacgtgtttg ccttccgcgt ctaaatctaa tgcctgacca ccgcacattc cggcaatacc
    45961 gctggcgctc gccagttcag aaatcatcga aattctgtcg cgatccgaca cttccggcat
    46021 atcagcatcg cttaaaatcg agaacgccag cgtttgtaaa gcgtcgccag cgagaatcgc
    46081 gtttgcttcg ccaaacttca catggcaggt cggcaaaccg cgacgcagat cgtcatcatc
    46141 catcgccggt aaatcatcat gaattaatga gtaagcgtgg atacactcta cggcggcagc
    46201 gggtgcgtcc agcgtgtttg tgctaacgcc aaacatatga ccggtggcat aaaccaggaa
    46261 gggtcgcaga cgcttaccac ctaataatgc accatactgc atggtttcga ccacgggagt
    46321 gttctgaaag ggcagtgggg cgataaaacg gctcagcgcc tggttggcct gcttaacgca
    46381 ggcttcgagt tgctgcggaa agtccattac tcattgtccg gtgtaaaagg ggttagagag
    46441 gcgtcttcat tgtcagacag cagaatttgt acgcgctgtt cggcttgttg taatttggcc
    46501 tgcccctgac gtgccagctg cacgccgcgt tcgaactcgt tcagcgcctc ttccagcggc
    46561 aggtcgccac tttccagacg ggttacaatc tgttccagct cgctcagcgc cttttcaaag
    46621 ctggcgggag cctcattttt cttcggcata atgaatgtct gactctcaat atttttcgcc
    46681 ccgtcatggt aacggactca gggcaaatag caaataacgc gcaatggtaa ggtgatgtgc
    46741 gcagcaaagc gatgttagtg gtatacttcc gcgcctggat gcagccgcag gtgtgggctg
    46801 ctgtattttt ccctatacaa gtcgcttaag gcttgccaac gaaccattgc cgccatgaag
    46861 tttatcatta aattgttccc ggaaatcacc atcaaaagcc aatctgtgcg cttgcgcttt
    46921 ataaaaatcc ttaccgggaa cattcgtaac gttttaaagc actatgatga gacgctcgct
    46981 gtcgtccgcc actgggataa catcgaagtt cgtgcaaaag atgaaaacca gcgtctggct
    47041 attcgcgacg ccctgacccg tattccgggt atccaccata ttctcgaagt cgaagacgtg
    47101 ccgtttaccg acatgcacga tatttttgag aaagcgttgg ttcagtatcg cgatcagctg
    47161 gaaggcaaaa ccttctgcgt acgcgtgaag cgccgtggca aacatgattt tagctcgatt
    47221 gatgtggaac gttacgtcgg cggcggttta aatcagcata ttgagtccgc gcgcgtgaag
    47281 ctgaccaatc cggaagtgac tgtccatctg gaagtggaag acgatcgtct cctgctgatt
    47341 aaaggccgct acgaaggtat tggcggtttc ccgatcggca cccaggaaga tgtgctgtcg
    47401 ctcatttccg gtggtttcga ctccggtgtt tccagttata tgttgatgcg tcgcggctgc
    47461 cgcgtgcatt actgtttctt taaccttggc ggcgcggcgc atgaaattgg cgtgcgtcag
    47521 gtggcgcatt atctgtggaa ccgttttggc agctcccacc gcgtgcgttt tgtcgctatt
    47581 aatttcgaac cggtcgtcgg ggaaattctc gagaaaatcg acgacggtca gatgggcgtt
    47641 atcctcaaac gtatgatggt gcgtgccgcg tctaaagtgg ctgaacgtta cggcgtacag
    47701 gcgctggtca ccggcgaagc gctcggccag gtgtccagtc agacgctgac caacctgcgc
    47761 ctgattgata acgtctccga tacgctgatc ctgcgtccgc tgatttctta cgacaaagag
    47821 cacatcatca acctggctcg ccagattggc accgaagact ttgctcgcac gatgccggaa
    47881 tattgcggtg ttatctccaa aagcccgacg gtgaaagcgg ttaagtcgaa gattgaagcg
    47941 gaagaagaga aattcgactt cagcattctc gataaagtgg ttgaagaagc gaataacgtt
    48001 gatatccgcg aaatcgccct gcagaccgag caggaagtgg tggaagtgga aaccgtcaat
    48061 ggcttcggcc cgaacgacgt gatcctcgat atccgttcta tcgatgaaca ggaagataag
    48121 ccactgaaag tcgaagggat tgatgtagtt tctctgccgt tctataaact gagcaccaag
    48181 tttggcgatc tcgaccagaa cagaacctgg ctactgtggt gtgagcgcgg ggtgatgagc
    48241 cgtctgcagg cgctctatct gcgcgagcag ggctttaaca atgtgaaggt atatcgcccg
    48301 taatttgtgg ttgtaacgtc gcatctggtc agatgcgacg cttaccgcat ccgacactac
    48361 tcgtaataat tataaatccc tgccgccatc accagttgtg atgccacttc atgggctttc
    48421 tcgcgcccaa cctgcaggtc gataattttc agaccaaagt cgatagctgt ccccggcccc
    48481 tggctggtca gcaattttac ccgtgcatcc cagacgacgc gcttgtcctg ccattgttca
    48541 gcgggaattt tgtctttcag cgtcgggaag ccggtcatat taccaatcgg gaagatatcg
    48601 tgcggcacca gcacggtggc tggcgcggcg caaatagccg cgacgatacg cccggaacgg
    48661 tggaactgtt taacggtttc aaccagcaga gtgctatcgc gaaaacactc tgcgccttta
    48721 atgccaccag gcagtacgat cacgtcatat tcgccatcag ccacctcgac cagcggcgca
    48781 tccgccagca gcttcacgcc gcgcgagcag gtaattgcca ggttgccatc gctggctacg
    48841 ctggcagtgg tgactttgat accgccgcga accaagaggt cgatcgtggt gacggcttca
    48901 gtctcttcac taccaggggc gaggcaaacc agtgccgatg cgctcatatt cactctcctt
    48961 tctttttacc atttcaaaca ggcgggtgtt ttccggtacg gcaatcccat gcgcgcgggc
    49021 gcggcgtaag agaaaaccat tgatatagtc gatttcggtg tggcgcagcg cgcggatatc
    49081 ctgcaacatc gacgagatat tttccgctgt ggcatcaatc acctgcatca cgtaatcacg
    49141 caaatcttcc gctgaagtat gatgcccttc gcgttcgatc actgccgcga cttcttcgca
    49201 tatttgcata atttcttgcg gatgatgacg taattcaccg ttcgggcaat tccagatggc
    49261 ggtcagtgga ttaatcacgc agttgactgc cagcttgcgc cacagctcgg cgcgaatatt
    49321 gttatgccag gcaacgtcag gcaacacggt ttgtaaaata tccgccagat aactgtaatc
    49381 gccatcctgt tgccgtgccg gaccaatatg cgtgataccg tttgccacat gaataatgac
    49441 attgccgtcg cggcgggcgg catgggtggt ggtgcccatc agtaatggct gctgaatatt
    49501 ttgcaactct tcgatggtgc ccatgccgtt gtgaattaac agtattggcg tggttacagg
    49561 cagtgtggac gcgaggcttt tgacggcatc ggaaacctgc catgctttca gcgtcaccag
    49621 gagcagatcg ctggtggcga gaaaatcggg atcgttggcg gtcagcgatt cgttaaatat
    49681 cgaaccatct gtctcaacca gattcgcact acaataaggt tgcggtacgc gcagccagcc
    49741 ctgaacttca tgaccctgtt tgcaaagtgc tgtaagccat aattgcccta aggcaccgca
    49801 tcccaatacg gtaattttca ttgttcctcc tcacccgcaa ccactccggg tgttcaataa
    49861 ggctatccct taattgtgca tgctgttgcg actatgcaca attaagggat acgtcctggt
    49921 gcaggactgt cggttattta actttgcggg tattatgctt cgcatcaaaa atgaagggag
    49981 aggaaaagat gccatctttc gatattgtct ctgaagttga tcttcaggaa gcacgtaacg
    50041 cggtcgataa cgcgagccgc gaagtggagt cccgttttga cttccgtaac gttgaagcct
    50101 catttgagct gaacgacgcc agcaaaacca tcaaagtgtt gagcgagtcc gatttccagg
    50161 tcaatcagtt gctggatatt ctgcgtgcca agctgctgaa gcgcggcatt gaaggcagtt
    50221 cactggatgt accggaaaat atcgttcata gcggtaaaac ctggtttgtg gaagcgaaac
    50281 tgaagcaggg cattgagagc gcgacccaga aaaaaatcgt caagatgatc aaagacagca
    50341 aactgaaagt gcaggcgcaa attcagggcg atgagatccg cgtgactggc aaatctcgtg
    50401 atgatttgca ggctgtcatg gcgatggtgc gcggtggcga tctgggtcag ccgttccagt
    50461 tcaaaaactt ccgcgattaa tcgcgacaac ctgcgctttg ttcatgtcag atgcggcatg
    50521 aacgcctggt tcggcctaca aaggcttgta aatcaggagc ttagtaggcc tgatgagcgt
    50581 agcgcagcag gcaatttcgc ctcgctttta tgcctggcga attgcctgtt caacatcaaa
    50641 gcgattcgtc actttgctgt cgattttcac ataagctgaa tgttcttctt ctgcaatcaa
    50701 cacttctttg atgccttcag tttctagcaa acgcactttt aacgcctcgt ttgcggcaat
    50761 gttcgccggg atttcaatgc gcaaactgct gacatacgcc ggttctttca tggtactggc
    50821 gactgccagc cacactgcgg ccagcattgc gccagcgaga aatacgccct gaccgtcaaa
    50881 catgccgtca atccagccgc ccagtgaacc gccaatcgcc acgccaagaa actggctggt
    50941 ggagtaaaca cccatcgctg tacctttgta acctgctggc gactctttac tgataagtga
    51001 aggcagaagg gcttccatca aattaaacgc tacaaagaaa agctgcacgc cgaccaccag
    51061 ttgccagaac tgcgtttgcg cgttccacaa cacaatttcc gcaaccacga tcaatccgac
    51121 gcagaagaca aagacttgct tcattttgcg cttaacttca gcgtagataa tgaaaggcac
    51181 gaccgagcca aaggcgatta gcattgtcgc cagatagacc ttccagtgtt cagccgccgg
    51241 gaaccctgca tcagccagtt gtccgggcag ggcaacaaac gtcgacatca gcaaaatatg
    51301 cagacacata atgccaaagt tgagtttcag cagccgcggt tccgccagca ctttactgaa
    51361 actgcctttc accattccgg actcacgatt aagtacgtga gtgctactgt tgggcacaac
    51421 ccaaatggtc aacgcaatgc cggtcgttgc cagaatagcg atcatccaga acagcgcgtg
    51481 cagcccaagt ttgtgagtga tgatcgggcc aagcaccatc gcaatggcaa aggtaatgcc
    51541 aaagctcacg ccgataaacg ccattgcttt ggtgcggttt tgttcgcgcg tgagatcgga
    51601 aagcagcgcc ataacggcag cggcaatcgc accggagcct tgtagcgccc ggcctagaat
    51661 aattccccag atggagtcag agagcgcagc gataacgcta ccggcggcaa acaccgccag
    51721 cccaccgaca attaatggtt tgcgaccaat acggtcggaa agcaggccaa acggaatctg
    51781 aaaaacggcc tgagtcagac cataaatacc aatggcaata ccgattaatg cttcgctggc
    51841 accttgcaga gccatgccat acgtggtcag aaccggcaga accataaaca tgcccagcat
    51901 gcgcaacgag aatacggtcc ctaaacccca ggtcgcgcgc ctctcacctg gcgtcatttt
    51961 ataatcgttc attaccacct ctgttttaaa ttcgcgacta gtgtaaagcg gcaaacgaat
    52021 ggggtaaaca tgcggatttt ttagtaaata tttcgagagg gatatgtttc taatgctaag
    52081 aaaaaaggtg ccgtagcacc tttttaatag agaggttttg ttaccacaca gcagccagca
    52141 gcgtatgcga gtccggtacc ataaaatcaa cggacatcat caccgagagg gcagtgatgg
    52201 cgatgataga gaagccgaac agcttgcgcg cccagattct gtcatcagca actttataac
    52261 cgcgcagagc catacctaac caccagacgc taaccgccgc ggcgaccacc agatatttat
    52321 atccagcgta accgccaaga gagagcatca gcgtggcaac ggcaaaggcg atgatataca
    52381 gcgtgatgtg attcttcgcc accgaaatgc cttttaccac tggcaatacc ggaatgtttg
    52441 ccgcctggta atccttaaag cggaaaatgg cgatggcata ggagtgaggc atctgccaca
    52501 ggctgaagat agccagcagg atcgctgcgc cgctatcgaa ctcgccggtt actgcacagt
    52561 agccaatcac cggcggcgca gcgccggaga gcgaaccaat caatgtgccg tagactgagt
    52621 ggcgtttcat gtacaggcta tagacgccga cataaaccac aaagcccatc acccccagcc
    52681 agcaggccag cggattcgcg ccaaaccaca gcagcataaa gccagcaata cccagcaagg
    52741 tggcgtacac cagcgagaca gcaggagaga tcaggccttt aaccagcacc cgattcttcg
    52801 tcctttccat ctttctgtcg atatccctgt cgatgtagtt gttaaacaca caacccgacg
    52861 ccacaaccag tgacacccca accagcgtgt agataaacag gggataatca atgctgccct
    52921 ttgaggccag caggaatccc ccaatcaccg agatcaggtt gccaaagatg atgcctggtt
    52981 tcgttacttg caggtattgc ttaaacatca taaccgccgc tcttagtgca tcatcatgtt
    53041 gtagttgagg ttccacataa tccagatgga gcctacaacc aggatagcga tgattagcac
    53101 ggtgaagaca aacgccgtca tgttccagcc ttcatctgat ttggtattca tgtgcaggaa
    53161 gcacaccaga tgcaccagaa cctgtaccac tgccattgcc aggattgttc ccagaattac
    53221 ggccggagag gcagcccctg tcatcaccat ccagaacgga atcaccgtca gaatgatcga
    53281 caggataaag cctgtcatgt aggtttttac gctgccatgg gacgcgccgc tgtgatcggt
    53341 agaatgactc attacatcgc ccccatcaga taaacaacag tgaacacaca gatccaaacc
    53401 acatccagga agtgccagaa caggctcagg cacatgatgc gggtacggtt agtgctggtc
    53461 aggccgcgac gagcgatttg taccatcagc accgccatcc agataagacc ggaagtgacg
    53521 tgcagaccgt gcgtgccgac cagcgcaaag aacgctgaca ggaagccgct gcgatccgga
    53581 cccatgccgt taacaatcag gtgatggaat tcgtagattt ccatcccgat aaatccggca
    53641 ccaaacaaac aggtcaacgc cagccaggag ataacctggc ttttgttgtt tttgtacatg
    53701 gcgatagccg ccatgccgta ggtgatggag ctgaacaaca gcaagaaagt ttcaaccaga
    53761 acgaacggca gttcgaaaat gtccttacct gtcgggccgc ttgcggtgcc gttcaccaga
    53821 acggcatagg tagcaaacaa gattgagaac agaatgcagt cgctcatcag gtagatccaa
    53881 aatccgaaga ttttggttcc gcctgcatcg tggtgcccgt gttcgtgcgc gtgggcagtc
    53941 gcgtgcgtca aagtatcagt tgccattttt cagccctgcc ttagtaatct catcgaaatg
    54001 ctggttttcc agtttttcga tttctgccac cggcacgtag taatccacgt cctcgtcgaa
    54061 gcttttcacg atccaggtga tgatcatgcc tgcgaagcca acaatcgcca gccaccagat
    54121 atgccagatc atggcgaaac cgaagatggt ggagaaagct gcaatgacga tacctgcacc
    54181 gctgtttttc ggcatatgaa tttcttcata gtggtcaggc tttttatacg cttcgccttt
    54241 ctctttcatt tcccagaatg catcacgctc gtgaacgtgc ggcacaacgg caaagttata
    54301 gaacggaggc ggggaagagt ttgcccactc cagcgtacgg ccaccccacg ggtcgccagt
    54361 caggtcacgg ttctggtcgc ggtcgcgaat agaaacgtac atctgaataa cgaggcagag
    54421 aatacccagc gcaatcagta ctgcaccgct agctgcaatc atcagcatgg tgtggaactg
    54481 cgggtcaatc tgctggctca aacgacgggt catgcccatg aagcccagtg catacagcgg
    54541 cataaaggca acgaagaagc cgatgatcca gaaccagaac gcgcgtttac cccaggtttc
    54601 attcagtttg aaaccgaacg ctttaggcca ccagtagatc atccctgcga agcagccgaa
    54661 gaccacgccg ccgatgataa cgttatggaa gtgcgcaatc aggaacaggc tgttatgcag
    54721 aacgaagtcc gcgcccggta ctgccagcag cacgccagtc atcccgccca ccgagaaagt
    54781 gacgataaaa ccgatggtcc acagcatcgc agaatggaac acgatacggc cctgatacat
    54841 ggtgaacagc cagttgaaga tcttcacccc ggtcgggatg gcgataatca ttgtggtgat
    54901 accaaagaag gcgtttacgt tcgcgcccgc acccatcgta aagaagtggt gcagccaaac
    54961 gatgaacgac agcacggtga tacagacggt tgcccatacc agcgaggtat aaccaaacag
    55021 acgtttacgc gagaaggttg ccgcaatttc ggagaacaca ccgaaaacag gcaggatcag
    55081 gatgtaaact tccgggtggc cccaggccca aatcaggttg atgtacatca tcatgttgcc
    55141 acccatatcg ttggtaaaga aatgggtgcc cagatagcga tccagggtca acaacgcgac
    55201 ggtaaccgtc agaattggga aggaagcaat aatcagtacg ttcgcgcaca gtgatgccca
    55261 ggtaaatact ggcatcttga acatggtcat gcccggtgcg cgcatcttca gaatggtaac
    55321 gaagaagttg ataccggtaa gcgtcgtacc tataccggat agctggagac tccatatcca
    55381 gtaatcaaca ccgactcccg gactgtactc tattcccgat agcggtggat aggccagcca
    55441 gccggtctgc gcaaattcgc ccacgccgag agaaacgtta accagaatca caccaacaac
    55501 agtaaaccag aagcttaagt tgttgaggaa cgggaacgca acgtcacgcg cgccgatctg
    55561 cagcggaacc accaggttca tcagaccgat aacgaaaggc atcgccacga agaagatcat
    55621 aatcacgccg tgcgcggtga agatctgatc gtagtggtga ggtggcagga agcccgcttc
    55681 gcccgccgag gcaagagcct gctggctacg catcataatg gcgtcagcaa aaccacgcag
    55741 caacatcaca atcgccacga tgatatacat gataccgagg cgtttatggt cgacggaggt
    55801 cagccactct ttccacaggt aggtccactt accgaagtaa gtgatcaggc caacgagcgc
    55861 cagacctccc aaaataatgc cagcgatcgt aaccatgacg ataggttcat ggaacgggac
    55921 tgcatcaagt gataattttc cgaacatctt tattcttcct caaccccttt aatgggcgga
    55981 ttccgcgtgg ctcatgtcca tgccttccat accttcgtgt gcgctgtgct caccttctgg
    56041 ctgggtcatg tccatgctct taccgtgagc cataaacttg ttaatcacat cagcaaacaa
    56101 gtctggtttc acgttggaga aatattccac ctggttgtat tcgctaggcg cggccagttt
    56161 ttcgaacgca gccatgtcag acatggtgtt cggcgactgc ttcgcttttg cgacccactg
    56221 gtcgaattcg gcgcgatccg gtgttgcaat agctttgaac ttcatgcctg agaagcccgg
    56281 gccgctgtag ctggcggaga taccgtcata agtaccgggt tcgttggcga tcagatgcag
    56341 gcgagtctgc ataccagcca tggcataaat ctggctaccc agacgcggaa tgaagaagga
    56401 gttcatcacg gagttggagg tcactttgaa gtacaccgga gtgttcgccg ggaaagcgat
    56461 ttcattcacg gtagcaatgc cctgttccgg gtagatgaag aaccatttcc agtccatgga
    56521 aaccacttcg atggtaatgg gcttctcgtc gtgtgccagc ggcttgctag gctcaagagc
    56581 gtgagtggtt ttccaggtca gtaccgcaag gaagatgatg attaagatag gtaccgtcca
    56641 gaccacagct tccactttat tggagtgtga ccagttcggg ctgtacttag catctttatt
    56701 gctcgcacga tacttccagg cgaaaccaac agccatcaag attgcgggaa taacgacaat
    56761 caacatcagg ccaaatgccg tcagtatcag tgaacgttgc tccagaccaa tctgtccttt
    56821 gggatctaac agcgcagaat tacagccact gagcaataca gtgcctgcaa ataatgacaa
    56881 ccatcccaaa cttttattgt atttcctgag tctcatttaa cgacctcaat tccacgggat
    56941 ctggtggcgt ttaaagtgtg tgggcatttt atgggaaggt tacattactg taaacatgat
    57001 taaattcctg ttacttggat ttgactgtca ggtcacatat gttgcaaaac atatcaagtt
    57061 gattttaaga agctgttgca aaagggcgtt ataacgaaag gggagtgcag aaggagtttg
    57121 gacgggcaat tggtataacc aatctggaat aaaataattg tttaacaaat aattatcatt
    57181 atggtgacaa ttgggtgggg ggaaaataaa gactcgttag ctgaatcgtg taagaaaaaa
    57241 tagaattcat aaattgcgtc aataatttcc aaacgctaag ccgcacaaaa gaacaaatat
    57301 tattaagcga tactgatgtt tatttagccg taataattac ggcgagtgat tactacagct
    57361 aaataatatt tacagattac gtcagatgcg tttttcgtag agccagataa tccagcaaac
    57421 caccaagcac gacgccagaa agggcgacta aaaccccgac ttccagcaga gcaggcagga
    57481 aagagaagtg cgtcaaatcc agcgcgtcca tcgtcaacag cagtaaccac acggccaaca
    57541 ggctgacgcc cgccgccagt gtccacatgg caaaggcata acctgccgga tattcggtac
    57601 gggagataaa gttgtcattt actcgtgtat attcaagcgt ctggcggcaa accagcagca
    57661 aaataagccc cggtacggca gcggcgacgg agaatagata gaatgtcgac cagccgtgtg
    57721 cttcaacaaa ccaacccgcc acggggccga cataaactcg tcctacagcg gaaagcgctg
    57781 agagcagggc aaattgagta gcggaaaatg acttattaca cagcgtcatt aacagcgcga
    57841 caaaggctga tgtgcccatc ccgccacaga ggttttcgaa aaagacggct gcgcccatgc
    57901 tgtagagatg cttatcagta atcgacagca gccagtaacc agcgttagac gcaccttgta
    57961 aaatgccgaa aatcagcagc gcccggaaca gcgacaggcg ctgcatcaaa atcccaccgt
    58021 acaatgcgcc cacaatggtc gccagtaagc caagcgtttt gttaaccacg cctacttcac
    58081 ccgcatcaaa cccgacgccg cgaatcaaaa acgtggttgt caggctcatg gcgaatgcgt
    58141 cgcccagctt atacagcacg ataagaagca aaataagcca ggcattattg cgaccaaaga
    58201 aatctcgcag aggtgcaaca accgcttgtt ccagcgtttt tggcacagga atggtgtcgg
    58261 tcggttctgg tgcaagcaac gtcgcgataa tacaagggat caacagcgcc gccatcaacc
    58321 agtacatgcc ctgccagccc agccatttat ctgccagcca cagggctaag ccgccggaaa
    58381 ccagcatccc taaacggtaa cccagcacgc tgattgccgc gcccgcacca cgttcttctg
    58441 ccgggagcac atcggttttc cacgcatcga agacaatatc ctgggaggcc gagcaaaaag
    58501 cgatcaccac cgccagtgcc gccatccagc ggagttgggt gccaggttcg agaaaaccca
    58561 tcgccgcaat ggcgactaat aacaggattt gcgtggcgag cagccaaccg cgccgccgcc
    58621 caaaaaatgg gggcgtgtag cggtccatca gcggtgacca gaggaattta aaaacgtaag
    58681 cctggcctac cagagagaag aaaccaatgg ttttgagatc aatattctcg accgtcatcc
    58741 aggcctgtaa ggtaccggat gtcagggcga gcggtagccc ggaagcaaaa cccaggatca
    58801 gcaatatggc tgaacgcggc tgttgaaaaa tacgtaaata ttgactggac atgggcgtct
    58861 acaggcccgg tttgcaccgg gccagagggc agaaattaac gcgcgttctg cttgatgaat
    58921 tcgtgaatgc tggtgtcctg agacatatca gcgatggtat cggtcagcac actgttaacc
    58981 gcatcggcga tatttttgtt ggaggcctgg aacgcacctt caacgttgta gctggcacga
    59041 tagtttttgg ttattttgtt gccattctgc gcggtagcga tgatggcgat atccgctttg
    59101 gtagcgatgt tgtagcgcac gttgccctgg gacacgtcag catacagttg gctaacgatg
    59161 atttgcagat taaccgggcc attcggacca accatgtaac cacgcgcggt catctgtttt
    59221 tccagcactt cttgcagcag gaaacgcaga tcgcgggagg cggccagggt aacgatttga
    59281 ttatcgcggg tgacttttgc cagcgcctga tcggtacgct gatcggcacc attaatgctt
    59341 acggtgacgc ccatcaggct tggatcctgc tgtggcagtg taatcgtcgg ggaaacttca
    59401 atagttgttg gcggttttgc gcatcctgca agcataaaca gagcaactaa cgggaagagg
    59461 atttttttga acatgttcgg gctctcagag actcttaagc gtgtttggta aaaattcccg
    59521 ccatcataac attgccaacg gcgaggggaa gtgggtaagg catgtaaatt catcatgttg
    59581 acgaaataat cacccctggt aaaagaaacg ctgatgcgag gcctgtgttt caatctttaa
    59641 atcagtaaac ttcatacgct tgacggaaaa accaggacga aacctaaata tttgttgtta
    59701 agctgcaatg gaaacggtaa aagcggctag tatttaaagg gatggatgac atctcagcgt
    59761 tgtcggagga gatatttcat gatgatacgt gagcggatag aagaaaaatt aagggcggcg
    59821 ttccaacccg tattcctcga agtagtggat gaaagctatc gtcacaatgt cccagccggc
    59881 tctgaaagcc attttaaagt tgtgctggtc agcgatcgtt ttacgggtga acgttttctg
    59941 aatcgtcatc gaatgattta cagtacttta gcggaggaac tctctactac cgttcatgcg
    60001 ctggctctgc atacttacac tattaaggag tgggaagggt tgcaggacac cgtctttgcc
    60061 tctcctccct gtcgtggagc aggaagcatc gcgtaaaaac gcatttgcaa ctgtcggcgc
    60121 tttttcagta tgttgctaaa gattttatga aaaacggcct gcgggccgtt ttgttttgtc
    60181 tggattttgc gctttttgcc cagcattcag acgaaaattg cccgggaatt gtgaaaaaat
    60241 acgcgacagc gcgcaataac cgttctcgac tcataaaagt gatgccgcta taatgccgcg
    60301 tcctatttga atgctttcgg gatgattctg gtaacaggga atgtgattga ttataagaac
    60361 atcccggttc cgcgaagcca acaacctgtg cttgcggggt aagagttgac cgagcactgt
    60421 gattttttga ggtaacaaga tgcaagtttc agttgaaacc actcaaggcc ttggccgccg
    60481 tgtaacgatt actatcgctg ctgacagcat cgagaccgct gttaaaagcg agctggtcaa
    60541 cgttgcgaaa aaagtacgta ttgacggctt ccgcaaaggc aaagtgccaa tgaatatcgt
    60601 tgctcagcgt tatggcgcgt ctgtacgcca ggacgttctg ggtgacctga tgagccgtaa
    60661 cttcattgac gccatcatta aagaaaaaat caatccggct ggcgcaccga cttatgttcc
    60721 gggcgaatac aagctgggtg aagacttcac ttactctgta gagtttgaag tttatccgga
    60781 agttgaactg cagggtctgg aagcgatcga agttgaaaaa ccgatcgttg aagtgaccga
    60841 cgctgacgtt gacggcatgc tggatactct gcgtaaacag caggcgacct ggaaagaaaa
    60901 agacagcgct gttgaagcag aagaccgcgt aaccatcgac ttcaccggtt ctgtagacag
    60961 cgaagagttc gaaggcggta aagcgtctga tttcgtactg gcgatgggcc agggtcgtat
    61021 gatcccgggc tttgaagacg gtatcaaagg ccacaaagct ggcgaagagt tcaccatcga
    61081 cgtgaccttc ccggaagaat accacgcaga aaacctgaaa ggtaaagcag cgaaattcgc
    61141 tatcaacctg aagaaagttg aagagcgtga actgccggaa ctgactgcag aattcatcaa
    61201 acgtttcggc gttgaagatg gttccgtaga aggtctgcgc gctgaagtgc gtaaaaacat
    61261 ggagcgcgag ctgaagagcg ccatccgtaa ccgcgttaag tctcaggcga tcgaaggtct
    61321 ggtaaaagct aacgacatcg acgtaccggc tgcgctgatc gacagcgaaa tcgacgttct
    61381 gcgtcgccag gctgcacagc gtttcggtgg caacgaaaaa caagctctgg aactgccgcg
    61441 cgaactgttc gaagaacagg ctaaacgccg cgtagttgtt ggcctgctgc tgggcgaagt
    61501 tatccgcacc aacgagctga aagctgacga agagcgcgtg aaaggcctga tcgaagagat
    61561 ggcttctgcg tacgaagatc cgaaagaagt tatcgagttc tacagcaaaa acaaagaact
    61621 gatggacaac atgcgcaatg ttgctctgga agaacaggct gttgaagctg tactggcgaa
    61681 agcgaaagtg actgaaaaag aaaccacttt caacgagctg atgaaccagc aggcgtaatt
    61741 tacgcagcat aacgcgctaa attcgcacaa aggcccgtca ccgccaggtg gtgggctttt
    61801 tttgtcatga attttgcatg gaaccgtgcg aaaagcctct ttcggtgtta gcgtaacaac
    61861 aaaagattgt tatgcttgaa atatggtgat gccgtaccca taacacaggg actagctgat
    61921 aatccgtcca taaggttaca atcggtacag caggtttttt caattttatc caggagacgg
    61981 aaatgtcata cagcggcgaa cgagataact ttgcacccca tatggcgctg gtgccgatgg
    62041 tcattgaaca gacctcacgc ggtgagcgct cttttgatat ctattctcgt ctacttaagg
    62101 aacgcgtcat ttttctgact ggccaggttg aagaccacat ggctaacctg attgtggcgc
    62161 agatgctgtt cctggaagcg gaaaacccag aaaaagatat ctatctgtac attaactccc
    62221 caggcggggt gatcactgcc gggatgtcta tctatgacac catgcagttt atcaagcctg
    62281 atgtcagcac catctgtatg ggccaggcgg cctcgatggg cgctttcttg ctgaccgcag
    62341 gggcaaaagg taaacgtttt tgcctgccga attcgcgcgt gatgattcac caaccgttgg
    62401 gcggctacca gggccaggcg accgatatcg aaattcatgc ccgtgaaatt ctgaaagtta
    62461 aagggcgcat gaatgaactt atggcgcttc atacgggtca atcattagaa cagattgaac
    62521 gtgataccga gcgcgatcgc ttcctttccg cccctgaagc ggtggaatac ggtctggtcg
    62581 attcgattct gacccatcgt aattgatgcc agaggcgcaa ctgtgccgct atacttatcc
    62641 agggcggcac aacgctgtaa gcggcttgcg cctgagaatg gcatttgcgt cgtcgtgtgc
    62701 ggcacaaaga acaaagaaga ggttttgacc catgacagat aaacgcaaag atggctcagg
    62761 caaattgctg tattgctctt tttgcggcaa aagccagcat gaagtgcgca agctgattgc
    62821 cggtccatcc gtgtatatct gcgacgaatg tgttgattta tgtaacgaca tcattcgcga
    62881 agagattaaa gaagttgcac cgcatcgtga acgcagtgcg ctaccgacgc cgcatgaaat
    62941 tcgcaaccac ctggacgatt acgttatcgg ccaggaacag gcgaaaaaag tgctggcggt
    63001 cgcggtatac aaccattaca aacgtctgcg caacggcgat accagcaatg gtgtcgagtt
    63061 gggcaaaagt aacattctgc tgatcggtcc gaccggttcc ggtaaaacgc tgctggctga
    63121 aacgctggcg cgcctgctgg atgttccgtt caccatggcc gacgcgacta cactgaccga
    63181 agccggttat gtgggtgaag acgttgaaaa catcattcag aagctgttgc agaaatgcga
    63241 ctacgatgtc cagaaagcac agcgtggtat tgtctacatc gatgaaatcg acaagatttc
    63301 tcgtaagtcg gacaacccgt ctattacccg tgacgtttcc ggtgaaggcg tacagcaggc
    63361 actgttgaaa ctgatcgaag gtactgttgc tgccgttcca ccgcagggcg ggcgtaagca
    63421 tccgcagcag gaatttttgc aggttgatac ctccaagatc ctgtttattt gtggcggtgc
    63481 gtttgccggt ctggataaag tgatttccca ccgtgtagaa accggctccg gcattggttt
    63541 tggcgcgacg gtaaaagcga agtccgacaa agcaagcgaa ggcgagctgc tggcgcaggt
    63601 tgaaccggaa gatctgatca agtttggtct tatccctgag tttattggtc gtctgccggt
    63661 tgtcgcaacg ttgaatgaac tgagcgaaga agctctgatt cagatcctca aagagccgaa
    63721 aaacgccctg accaagcagt atcaggcgct gtttaatctg gaaggcgtgg atctggaatt
    63781 ccgtgacgag gcgctggatg ctatcgctaa gaaagcgatg gcgcgtaaaa ccggtgcccg
    63841 tggcctgcgt tccatcgtag aagccgcact gctcgatacc atgtacgatc tgccgtccat
    63901 ggaagatgtc gaaaaagtgg ttatcgacga gtcggtaatt gatggtcaaa gcaaaccgtt
    63961 gctgatttat ggtaagccgg aagcgcaaca ggcatctggt gaataattaa ccattcccat
    64021 acaattagtt aaccaaaaag gggggatttt atctcccctt taatttttcc tctattctcg
    64081 gcgttgaatg tgggggaaac atccccatat actgacgtac atgttaatag atggcgtgaa
    64141 gcacagtcgt gtcatctgat tacctggcgg aaattaaact aagagagagc tctatgaatc
    64201 ctgagcgttc tgaacgcatt gaaatccccg tattgccgct gcgcgatgtg gtggtttatc
    64261 cgcacatggt cattccctta tttgtcgggc gggaaaaatc tatccgttgt ctggaagcgg
    64321 cgatggacca tgataaaaaa attatgctgg tcgcgcagaa agaagcttca acggatgagc
    64381 cgggtgtaaa cgatcttttc accgtcggga ccgtggcctc tatattgcag atgctgaaac
    64441 tgcctgacgg caccgtcaaa gtgctggtcg aggggttaca gcgcgcgcgt atttctgcgc
    64501 tctctgacaa tggcgaacac ttttctgcga aggcggagta tctggagtcg ccgaccattg
    64561 atgagcggga acaggaagtg ctggtgcgta ctgcaatcag ccagttcgaa ggctacatca
    64621 agctgaacaa aaaaatccca ccagaagtgc tgacgtcgct gaatagcatc gacgatccgg
    64681 cgcgtctggc ggataccatt gctgcacata tgccactgaa actggctgac aaacagtccg
    64741 ttctggagat gtccgacgtt aacgaacgtc tggaatatct gatggcaatg atggaatcgg
    64801 aaatcgatct gctgcaggtt gagaaacgca ttcgcaaccg cgttaaaaag cagatggaga
    64861 aatcccagcg tgagtactat ctgaacgagc aaatgaaagc tattcagaaa gaactcggtg
    64921 aaatggacga cgcgccggac gaaaacgaag ccctgaagcg caaaatcgac gcggcgaaga
    64981 tgccgaaaga ggcaaaagag aaagcggaag cagagttgca gaagctgaaa atgatgtctc
    65041 cgatgtcggc agaagcgacc gtagtgcgtg gttatatcga ctggatggta caggtaccgt
    65101 ggaatgcgcg cagcaaggtc aaaaaagacc tgcgtcaggc gcaggaaatc cttgataccg
    65161 accattatgg tctggagcgc gtgaaagatc gcatccttga gtaccttgcg gttcaaagcc
    65221 gtgtcaacaa aatcaaggga ccgatcctct gcctggtagg gccgccgggg gtaggtaaaa
    65281 cctctcttgg tcagtccatt gccaaagcca ccgggcgtaa atatgtccgt atggcgctgg
    65341 gcggcgtgcg tgatgaagcg gaaatccgtg gtcaccgccg tacttacatc ggttctatgc
    65401 cgggtaaact gatccagaaa atggcgaaag tgggcgtgaa aaacccgctg ttcctgctcg
    65461 atgagatcga caaaatgtct tctgacatgc gaggcgatcc ggcctctgca ctgcttgaag
    65521 tgctggatcc agagcagaac gtagcgttca gcgaccacta cctggaagtg gattacgatc
    65581 tcagcgacgt gatgtttgtc gcgacgtcga actccatgaa cattccggca ccgctgctgg
    65641 atcgtatgga agtgattcgc ctctccggtt ataccgaaga tgaaaaactg aacatcgcca
    65701 aacgtcacct gctgccgaag cagattgaac gtaatgcact gaaaaaaggt gagctgaccg
    65761 tcgacgatag cgccattatc ggcattattc gttactacac ccgtgaggcg ggcgtgcgtg
    65821 gtctggagcg tgaaatctcc aaactgtgcc gcaaagcggt taagcagtta ctgctcgata
    65881 agtcattaaa acatatcgaa attaacggcg ataacctgca tgactacctc ggtgttcagc
    65941 gtttcgacta tggtcgcgct gataacgaaa actgtgtcgg tcaggtaacc ggtctggcgt
    66001 ggacggaagt gggcggtgac ttgctgacca ttgaaaccgc atgtgttccg ggtaaaggca
    66061 aactgaccta taccggttcg ctcggcgaag tgatgcagga gtctattcag gcggcgttaa
    66121 cggtggttcg tgcgcgtgcg gaaaaactgg ggatcaaccc tgatttttac gaaaaacgtg
    66181 acatccacgt ccacgtaccg gaaggtgcga cgccgaaaga tggtccgagt gccggtattg
    66241 ctatgtgcac cgcgctggtt tcttgcctga ccggtaaccc ggttcgtgcc gatgtggcaa
    66301 tgaccggtga gatcactctg cgtggtcagg tactgccgat cggtggtttg aaagaaaaac
    66361 tcctggcagc gcatcgcggc gggattaaaa cagtgctaat tccgttcgaa aataaacgcg
    66421 atctggaaga gattcctgac aacgtaattg ccgatctgga cattcatcct gtgaagcgca
    66481 ttgaggaagt tctgactctg gcgctgcaaa atgaaccgtc tggcatgcag gttgtgactg
    66541 caaaatagtg acctcgcgca aaatgcacta ataaaaacag ggctggcagg ctaattcggg
    66601 cttgccagcc tttttttgtc tcgctaagtt agatggcgga tcgggcttgc ccttattaag
    66661 gggtgttgta aggggatggc tggcctgata taactgctgc gcgttcgtac cttgaaggat
    66721 tcaagtgcga tataaattat aaagaggaag agaagagtga ataaatctca attgatcgac
    66781 aagattgctg caggggctga tatctctaaa gctgcggctg gccgtgcgtt agatgctatt
    66841 attgcttccg taactgaatc tctgaaagaa ggggatgatg tagcactggt aggttttggt
    66901 acttttgccg ttaaagagcg tgctgcccgt actggccgca acccgcagac cggtaaagag
    66961 atcaccatcg ctgctgctaa agtaccgagc ttccgtgcag gtaaagcact gaaagacgcg
    67021 gtaaactaag cgttgtcccc ggtggggatg tgacgaagtt caagggcgca tctactgatg
    67081 tgcctttttt atttgtattc ggtgactttc tgcgtcttgt gggctgacaa ttgcccccgt
    67141 ttcttgtcac aataggcctt tgcgcgcatc gatacgttgc gtgaggtaca cagtcatcta
    67201 cagcggagtg ttgttacacc atgatggaca gcttacgcac ggctgcaaac agtctcgtgc
    67261 tcaagattat tttcggtatc attatcgtgt cgttcatatt gaccggcgtg agtggttacc
    67321 tgattggcgg aggcaataac tacgccgcaa aagtgaatga ccaggaaatc agccgtgggc
    67381 agttcgagaa cgcctttaac agcgagcgta atcgcatgca gcaacagctg ggcgatcaat
    67441 actccgagct ggcagcgaat gaaggctata tgaaaaccct gcgtcaacag gtgctgaatc
    67501 gtctgatcga cgaggcgctg ttggatcagt acgctcgtga gctgaaactg ggtatcagtg
    67561 atgagcaggt taaacaggcg attttcgcga ccccagcctt ccaggttgac ggcaaatttg
    67621 ataacagccg ctataacggt atcctcaacc agatggggat gaccgccgat cagtacgccc
    67681 aggcgctgcg taaccagctc actacccaac agctgattaa cggtgttgcc ggtaccgatt
    67741 ttatgctgaa aggtgaaacc gacgagctgg cggcactggt cgcgcaacaa cgcgtggtgc
    67801 gtgaggcgac tatcgatgtt aacgcgctgg cggcgaagca gcctgtgacc gaacaggaga
    67861 ttgccagcta ctacgaacaa aacaaaaaca atttcatgac gccggaacaa ttccgcgtga
    67921 gttacatcaa gctggatgcc gcaacgatgc agcaaccggt tagcgatgcg gatatccaga
    67981 gctactacga tcagcatcag gatcaattca cccagccgca gcgtacccgc tacagcatca
    68041 tccagaccaa aactgaagat gaagcgaaag cggtacttga tgagctgaat aaaggcggtg
    68101 attttgctgc attagccaaa gaaaaatctg ccgatattat ctctgcccgt aacggcggcg
    68161 atatgggttg gttagaagat gccactatcc ccgacgaact gaaaaatgct ggtctgaaag
    68221 aaaaaggcca actgtctggt gtcatcaaat cttcggtcgg tttcctgatt gtacgtctgg
    68281 acgacattca gccagcgaaa gtgaaatcgt tagacgaagt acgtgacgac attgcggcga
    68341 aagtgaaaca cgaaaaagcc ctcgatgcgt actatgcgct gcagcagaaa gtgagcgatg
    68401 cggcaagcaa cgacacagag tctctggccg gtgcagagca agctgccggc gttaaagcca
    68461 ctcagacggg ttggttcagc aaagataacc tgccggaaga gttgaacttc aagccggttg
    68521 ccgacgctat ctttaacggc ggtctggtag gtgaaaacgg cgcgccgggc atcaactctg
    68581 acatcatcac cgtagacggc gaccgtgcat tcgtgctgcg catcagcgag cacaaaccgg
    68641 aagcggtgaa accgttggca gatgttcagg aacaagttaa ggcactggtt cagcacaaca
    68701 aagctgaaca acaggcgaaa gtggatgctg agaaactgct ggttgatttg aaagccggca
    68761 aaggtgcgga agctatgcag gctgccggtc tgaaatttgg cgagccgaaa accttaagcc
    68821 gttccggtcg tgacccgatt agccaggcgg cgtttgcact gccactgcca gcgaaagaca
    68881 aaccgagcta cggtatggcg accgatatgc aaggtaatgt ggttctgctg gcgctggatg
    68941 aagtgaaaca aggttcaatg ccggaagatc agaaaaaagc gatggtgcag ggtatcaccc
    69001 agaacaacgc acaaatcgtc tttgaagctc tgatgagtaa cctgcgtaaa gaggcgaaaa
    69061 tcaaaattgg cgatgcgctg gaacagcaat aatcctgaag ccgcctcgca aaaaaatgcg
    69121 ttgcagctgt aacaagaaaa ggtcgctttc gcggcctttt ccatttctga acattgccat
    69181 ttgtttactg ttttcactgc cgttaaggtg attccactgt taacaaacaa ggagaaaaca
    69241 gtatgaaaca cggaattaaa gcactgctca ttaccctgtc cctggcctgt gccggaatgt
    69301 ctcatagcgc gctggcggca gcttctgtgg cgaaaccgac ggcggtagaa accaaagcgg
    69361 aagctcctgc agcacaaagt aaagcagcag taccggcgaa agccagtgac gaagaaggca
    69421 cccgggtcag cattaataat gccagcgcgg aagagctagc ccgcgcgatg aatggcgttg
    69481 gcctgaagaa agcgcaggcg attgtcagtt atcgcgaaga gtacggtccg tttaaaacag
    69541 tggaggatct aaagcaggtg ccggggatgg gcaattcgct ggtggaacgt aatctggcgg
    69601 tattaaccct gtaattaatt tgcatagtgg caattttttg ccagactgaa gaggtcatac
    69661 cagttatgac ctctgtactt ataacaacaa cgtaaggtta ttgcgctatg caaacacaaa
    69721 taaaagttcg tggatatcat ctcgacgttt accagcacgt caacaacgcc cgctaccttg
    69781 aatttctcga agaagcccgc tgggatgggt tggaaaatag cgacagtttt cagtggatga
    69841 cggcccataa catcgccttc gtcgtggtca atatcaatat taactatcgt cgcccagcgg
    69901 tattaagtga cctgttaact attaccagtc agttgcagca attaaacggt aaaagcggca
    69961 tcttaagcca ggtcattaca ctggagccgg aagggcaggt ggtagcggat gcgcttatta
    70021 cgtttgtttg tattgatctt aaaacgcaga aagcattagc tctggaaggg gaattgcgcg
    70081 aaaagctgga gcagatggtt aagtaaacgt tttgtggtgc cggatgctca agccgcatcc
    70141 ggcgacaccc ggaataatta cctcaacccg gttttctgct tcatcgctgc catcaccgtc
    70201 ggtttatcgg ccagataatg attcaaaccg ttggcgcgta aattacatgc cgcacaatga
    70261 ccgcaaccgt cgcctttaat gccgttatag caggtcaacg tttcgttacg gactaaatcc
    70321 agtttgccgt aataatctgc cagcgcccag gtttccgctt tatcaatcca catcagcggc
    70381 gtttcaaaac gaatatcttt cgccatgccc aaactgacgg catggtttag tgctttcaca
    70441 aactcatcgc ggcaatccgg gtagccggag aaatccgttt cacagacgcc ggtaattacg
    70501 gcttctgctt ttacctgata cgcatatatt gccgccagcg tcaggaacaa aatattacgc
    70561 cctgggacaa acgtattcgg gatgccatcg gcttcaggtt cataatcagg caccggaatg
    70621 ctgtcacgtg tcaggctgct gaccgccagc tcgttgagca gcgttacatc aagaacctta
    70681 tgcgcgcgtg ctcccagttt cagcgccagt tcgcgtgcca cgtcgatttc tgcgcgatgt
    70741 cgctgaccgt aatcgaacgt cacgcaatgg acttcatcat attgttgtaa tgcctgcacc
    70801 agacaggtgg tggaatcctg gcctccactg aacacaacga cagcacgttt catagataat
    70861 cctgcttgaa caataaaagc gttatggtaa cgcctgcgat taacccggac cagctattca
    70921 ttgcgacggc gcgggaagcc aggcttcggt aaattcaaac cagccgcgcg gtgtcagtcg
    70981 cacaccgttc acgccgggag gggcactaat gcgatagtga tagttgaaca gcggcgtcag
    71041 cgtcgcgtct gccattaact ggctaaaaac cgctttcagg gcattaaatc ggttttcctc
    71101 atcaggcatt acttgcaccg cgtccagcgt cgattgcaga tgtgcatatg ctggagcgtc
    71161 gaaaacatgt ggccatagtg gatcgcaacg tagccattgc tccagagtat attccggtgc
    71221 ttcgccaatt aatctgtcgc ccatcatgag gtctgcgtgt gccagtaggg tcgtgtcgtc
    71281 ccagtttttt gcgttatgaa aaataattgt gagttcacag ccttccgctg ccagtgtcgc
    71341 ctgtaggcgt tctgccatgg tatgaagttc tatcggtagg tgataaacca gcgtcaaggt
    71401 tttcggtagt ttgacttcat ccggtacttg ccagtgcgga atagtccagc ctggcagtaa
    71461 tgcatgactg gcggtgatca ggttttctcc gacttctaac gtttgtaata aaccggattg
    71521 atgaataatg gagatcactt ttcgcgcctg ccagagggag agtcggggac ttttgcgcaa
    71581 cgttaaatag caaaaaccta aactgatgcc actactgacc tggctgaccc gttgcagctc
    71641 ctccggtttg ccgatggtga tttgcacggg atgccgacaa ctggttccca aatctttttc
    71701 gaaaagcggc ggagttatcc agtactcaac cgctttaagc agcggatgac gcaaatggta
    71761 ataatcatgg ctctccaggc gcaccagctc cgctgtgaat tgtgttaagc gaaaaggacc
    71821 agtgccgatc agtgggaatt gcggatgcgc cagatggctg caatagctcg ccagccggtg
    71881 cgcaagccag taatcggggc gatgtaaaaa gaaggtcaga cactgcggat gggtgacttc
    71941 aatacgcttc acgctaataa ataattgatc cagtgctggc agttgtaaca gcatcaataa
    72001 tcgctggtgt aagtgtgagg cttttactgc atcgccgtta tgccagtgta gggttgaacg
    72061 aagataaaag tcccagcgta acccgtcagt agaggtttcc cagtgatgcg ctaaatcgcc
    72121 aatcgggcgc tgagtattat tatcgaagcg ggtcaggccg gaaaatatct gcccggcgag
    72181 atgctgctcg gcacggccgg gcaaaaagcc tggttgtagc ggttcgagcg ggcgatagta
    72241 gggaatacgc aacgtgggtg tatcgttttg ccattgtccg cccataaacg gctgtaacag
    72301 agtgcgtagc tcacctgggg ccagttgcgc cagctccagc acatcttgct gctttccggt
    72361 ttccagtgcc tgttccatca tcgcattgcg tagcgattcc ggcgtgacca gaaagcgtaa
    72421 tatgtccgcg ctttccgcgt cctgactgcg cctgccactc cagccatccc gcctcctgtg
    72481 cctgacgcaa cagcgtacga acatggcgtt cgctgcaaaa acagcgttcg gccagttcgc
    72541 tgacggtgac ggtttgcggc tttccggctg aaggttgcca cagacgttga tactggttaa
    72601 gacggttgag caatcgcata taaacccgga acaatattat ttaactattc actattactt
    72661 ccgtatatat caggtgatac tcaatctcca ttaaccgtgt cacagagtgg agaaagaaat
    72721 ggctcgtctg gcagcatttg atatggatgg cactttattg atgcctgacc atcatttagg
    72781 tgagaaaacc ctctctactt tggcgcgact gcgtgaacgc gacattaccc tcacttttgc
    72841 cacggggcgt catgcgctgg agatgcagca tattctcggg gcgctatcgc tggatgcata
    72901 tttgattacc ggcaacggaa cgctcgtgca ttctctggaa ggtgaacttt tacatcgtga
    72961 tgatttacct gcggatgtcg cggagctggt gctgtatcag caatgggata cccgagccag
    73021 catgcatatc ttcaatgacg acggttggtt taccgggaaa gagatccctg cgttgttgca
    73081 ggcatttgtc tatagcggtt ttcgttatca gataatcgat gtcaaaaaaa tgccactcgg
    73141 cagcgtcacc aagatctgct tctgtggcga tcacgacgat cttacacgct tgcagatcca
    73201 gctatacgaa gcattaggcg agcgtgcaca tttgtgtttt tccgccacgg attgcctcga
    73261 agtgctgccg gtgggctgca ataaaggcgc tgcattgacg gtgctgaccc aacatctagg
    73321 tttatcgttg cgcgattgca tggcctttgg tgatgcgatg aacgatcgcg aaatgttagg
    73381 cagcgtcggt agcgggttta ttatgggcaa tgcgatgccg caactgcgcg cggagctccc
    73441 gcatttaccg gtgattggac attgccgaaa tcaggctgtc tctcactatt tgacgcactg
    73501 actggactat ccacatctac cttattcccc cgaataatga gatcccttcc agcaccgggc
    73561 aattgcccgg ttttttttgc gttgaatttg tcattttgtg ccgtggtgtt taaaccgcac
    73621 agaataaatt gtcgtgattt cacctttaaa atagaattaa aagagaaaaa aattctctgt
    73681 ggaagggcta tgttagataa aattgaccgt aagctgctgg ccttactgca gcaggattgc
    73741 accctctctt tgcaggcact ggctgaagcc gttaatctga caaccacccc ttgctggaag
    73801 cgcctgaaac ggctggagga cgacggtatc cttatcggca aagtcgccct gctggatccg
    73861 gaaaaaatag gcctcggcct gaccgccttt gtgctgataa aaacgcaaca tcacagtagc
    73921 gaatggtatt gccgctttgt cacggtggtt accgaaatgc cagaagtgct ggggttctgg
    73981 cgcatggctg gtgaatacga ttatctgatg cgcgtccagg ttgccgacat gaaacgctac
    74041 gacgagtttt ataagcgtct ggtaaacagc gtgccggggc tgtcggacgt cacttccagc
    74101 ttcgcgatgg aacagattaa atacaccact tctttaccca tcgaataaat atccagaatc
    74161 aggtcaggac acaacgcgtg cgattatttg ctcaattaag ctggtatttc cgtcgggaat
    74221 ggcgtcgcta tctcggggct gtcgccttgc ttgtcattat cgcgatgctg caactggttc
    74281 cgccaaaagt ggttggtatt gttgtcgatg gcgtgacaga acaacacttt actaccgggc
    74341 agatcctgat gtggatcgcc accatggtgc tgattgccgt tgtggtttat ttcctgcgtt
    74401 acgtctggcg ggtattgctg tttggtgcgt cttatcaact ggctgttgaa ctgcgtgaag
    74461 attattaccg tcagctaagc cggcagcatc ctgagtttta cctgcgtcat cgcacgggtg
    74521 acctcatggc tcgtgcgacc aatgacgtcg ttcgcgtcgt gtttgcagcc ggagaagggg
    74581 tgctgacgct ggtggattca ctggtgatgg gctgcgctgt gttgattatg atgtctacgc
    74641 aaattagctg gcagttgacc ttatttgccc tgttgccgat gccagtgatg gcgatcatga
    74701 tcaagcgcaa cggcgatgcc ttgcatgaac gctttaagct ggcacaggcg gcgttttcta
    74761 gtcttaatga ccgcacctag gaaagcctca ccagtatccg catgatcaaa gcctttggtc
    74821 tggaagatcg ccagtcggcg ttatttgccg cggatgccga agataccggc aaaaaaaaca
    74881 tgcgggtggc gcgtattgat gctcgtttcg acccgaccat ctatatcgcg attggtatgg
    74941 cgaacttgct ggcgattggc ggcggtagtt ggatggtggt gcagggcagt ttaacgctgg
    75001 gccagctcac cagttttatg atgtatttag gtctgatgat ttggccaatg ctggcgctgg
    75061 catggatgtt taacattgtg gaacgtggta gtgctgcata cagccgtatt cgcgcgatgc
    75121 tggcggaagc gccggtggtg aacgatggta gcgaacccgt gccggaaggg cgtggcgaac
    75181 tggatgtaaa tattcaccag ttcacgtatc cgcagactga ccatcctgcg ctggaaaacg
    75241 tcaatttcgc cctgaaaccc ggtcagatgc tgggtatctg cgggccgact ggttccggca
    75301 aaagtaccct gttgtcgctc attcagcgtc atttcgacgt cagcgagggg gatattcgct
    75361 ttcatgatat tcctctgacg aagttacaac tcgatagctg gcgtagccgc ctggcggtag
    75421 ttagccagac accgttcctt ttttccgaca ccgtagcgaa caacatcgcg ttgggttgcc
    75481 cgaatgccac ccagcaagag attgagcatg tcgcgcggtt agccagcgta catgacgata
    75541 ttttgcgtct accgcaaggt tacgatacag aagtgggcga gcgcggcgtg atgctttccg
    75601 gtgggcaaaa acagcgtatc tccattgctc gagcgttatt agtcaacgcg gaaatcctca
    75661 tccttgatga tgcgctttcg gcggtggacg gacgcacaga gcaccagatc ctgcataacc
    75721 tgcgtcagtg gggacaggga agaacggtaa tcatcagtgc ccatcgcctt tcggcactga
    75781 cggaagccag tgaaaatgta atgaacg
//
LOCUS       DAJVUY010000004        66349 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.004, whole genome shotgun sequence.
ACCESSION   DAJVUY010000004 DAJVUY010000000
VERSION     DAJVUY010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 66349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 66349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..66349
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.004"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(129..608)
                     /gene="folK"
                     /locus_tag="OQQ72_000253"
     CDS             complement(129..608)
                     /gene="folK"
                     /locus_tag="OQQ72_000253"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCS2010109.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(605..2023)
                     /gene="pcnB"
                     /locus_tag="OQQ72_000254"
     CDS             complement(605..2023)
                     /gene="pcnB"
                     /locus_tag="OQQ72_000254"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HCS2010110.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2062..2988)
                     /gene="gluQRS"
                     /locus_tag="OQQ72_000255"
     CDS             complement(2062..2988)
                     /gene="gluQRS"
                     /locus_tag="OQQ72_000255"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HCS2010111.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLITALQFLGQQVEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3025..3480)
                     /gene="dksA"
                     /locus_tag="OQQ72_000256"
     CDS             complement(3025..3480)
                     /gene="dksA"
                     /locus_tag="OQQ72_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002209354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HCS2010112.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(3658..4362)
                     /gene="sfsA"
                     /locus_tag="OQQ72_000257"
     CDS             complement(3658..4362)
                     /gene="sfsA"
                     /locus_tag="OQQ72_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HCS2010113.1"
                     /translation="MEFSPLLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAEGMALKKSLPVTL"
     gene            complement(4377..4907)
                     /gene="thpR"
                     /locus_tag="OQQ72_000258"
     CDS             complement(4377..4907)
                     /gene="thpR"
                     /locus_tag="OQQ72_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HCS2010114.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            4981..7410
                     /gene="hrpB"
                     /locus_tag="OQQ72_000259"
     CDS             4981..7410
                     /gene="hrpB"
                     /locus_tag="OQQ72_000259"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HCS2010115.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQLANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQSPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            7606..10128
                     /gene="mrcB"
                     /locus_tag="OQQ72_000260"
     CDS             7606..10128
                     /gene="mrcB"
                     /locus_tag="OQQ72_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HCS2010116.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRAHLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGLVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWAGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            10348..12537
                     /gene="fhuA"
                     /locus_tag="OQQ72_000261"
     CDS             10348..12537
                     /gene="fhuA"
                     /locus_tag="OQQ72_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HCS2010117.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESAWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            12588..13385
                     /gene="fhuC"
                     /locus_tag="OQQ72_000262"
     CDS             12588..13385
                     /gene="fhuC"
                     /locus_tag="OQQ72_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HCS2010118.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSSKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            13385..14275
                     /gene="fhuD"
                     /locus_tag="OQQ72_000263"
     CDS             13385..14275
                     /gene="fhuD"
                     /locus_tag="OQQ72_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HCS2010119.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            14272..16254
                     /gene="fhuB"
                     /locus_tag="OQQ72_000264"
     CDS             14272..16254
                     /gene="fhuB"
                     /locus_tag="OQQ72_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HCS2010120.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATSTMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(16289..17569)
                     /gene="hemL"
                     /locus_tag="OQQ72_000265"
     CDS             complement(16289..17569)
                     /gene="hemL"
                     /locus_tag="OQQ72_000265"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HCS2010121.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            17794..19215
                     /gene="clcA"
                     /locus_tag="OQQ72_000266"
     CDS             17794..19215
                     /gene="clcA"
                     /locus_tag="OQQ72_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HCS2010122.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMEALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSEILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            19239..19304
                     /locus_tag="OQQ72_000267"
     CDS             19239..19304
                     /locus_tag="OQQ72_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010123.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            19297..19641
                     /gene="erpA"
                     /locus_tag="OQQ72_000268"
     CDS             19297..19641
                     /gene="erpA"
                     /locus_tag="OQQ72_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HCS2010124.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(19688..20311)
                     /locus_tag="OQQ72_000269"
     CDS             complement(19688..20311)
                     /locus_tag="OQQ72_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HCS2010125.1"
                     /translation="MLVYWLDIVGTVVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20349..21148)
                     /gene="btuF"
                     /locus_tag="OQQ72_000270"
                     /pseudo
     CDS             complement(20349..21148)
                     /gene="btuF"
                     /locus_tag="OQQ72_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
     gene            complement(21141..21839)
                     /gene="mtnN"
                     /locus_tag="OQQ72_000271"
     CDS             complement(21141..21839)
                     /gene="mtnN"
                     /locus_tag="OQQ72_000271"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HCS2010126.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHGKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            21923..23440
                     /gene="dgt"
                     /locus_tag="OQQ72_000272"
     CDS             21923..23440
                     /gene="dgt"
                     /locus_tag="OQQ72_000272"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCS2010127.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            23570..24994
                     /gene="degP"
                     /locus_tag="OQQ72_000273"
     CDS             23570..24994
                     /gene="degP"
                     /locus_tag="OQQ72_000273"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HCS2010128.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            25149..26306
                     /gene="cdaR"
                     /locus_tag="OQQ72_000274"
     CDS             25149..26306
                     /gene="cdaR"
                     /locus_tag="OQQ72_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CdaR"
                     /protein_id="HCS2010129.1"
                     /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
                     GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLR
                     KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDL
                     NQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNS
                     FGRWDAEDHRKRVEQLITRMKEYGRLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQ
                     RMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHN
                     VQPLATSKALFIYRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(26395..26781)
                     /locus_tag="OQQ72_000275"
     CDS             complement(26395..26781)
                     /locus_tag="OQQ72_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HCS2010130.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(26943..27755)
                     /gene="yaeI"
                     /locus_tag="OQQ72_000276"
     CDS             complement(26943..27755)
                     /gene="yaeI"
                     /locus_tag="OQQ72_000276"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HCS2010131.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(27810..28634)
                     /gene="dapD"
                     /locus_tag="OQQ72_000277"
     CDS             complement(27810..28634)
                     /gene="dapD"
                     /locus_tag="OQQ72_000277"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCS2010132.1"
                     /translation="MQQLQNIIETAFERRAEITPTNADTVTREAVNQVIALLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGHVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(28665..31337)
                     /gene="glnD"
                     /locus_tag="OQQ72_000278"
     CDS             complement(28665..31337)
                     /gene="glnD"
                     /locus_tag="OQQ72_000278"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HCS2010133.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(31399..32193)
                     /gene="map"
                     /locus_tag="OQQ72_000279"
     CDS             complement(31399..32193)
                     /gene="map"
                     /locus_tag="OQQ72_000279"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCS2010134.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            32561..33286
                     /gene="rpsB"
                     /locus_tag="OQQ72_000280"
     CDS             32561..33286
                     /gene="rpsB"
                     /locus_tag="OQQ72_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCS2010135.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            33544..34395
                     /gene="tsf"
                     /locus_tag="OQQ72_000281"
     CDS             33544..34395
                     /gene="tsf"
                     /locus_tag="OQQ72_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCS2010136.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            34542..35267
                     /gene="pyrH"
                     /locus_tag="OQQ72_000282"
     CDS             34542..35267
                     /gene="pyrH"
                     /locus_tag="OQQ72_000282"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCS2010137.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            35559..36116
                     /gene="frr"
                     /locus_tag="OQQ72_000283"
     CDS             35559..36116
                     /gene="frr"
                     /locus_tag="OQQ72_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCS2010138.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            36208..37404
                     /gene="ispC"
                     /locus_tag="OQQ72_000284"
     CDS             36208..37404
                     /gene="ispC"
                     /locus_tag="OQQ72_000284"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HCS2010139.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            37592..38350
                     /gene="ispU"
                     /locus_tag="OQQ72_000285"
                     /gene_synonym="uppS"
     CDS             37592..38350
                     /gene="ispU"
                     /locus_tag="OQQ72_000285"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308203.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HCS2010140.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFIDV
                     LWPDFDEQDFEGALNAFANRERRFGGTEPGDETA"
     gene            38363..39220
                     /gene="cdsA"
                     /locus_tag="OQQ72_000286"
     CDS             38363..39220
                     /gene="cdsA"
                     /locus_tag="OQQ72_000286"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCS2010141.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVSLLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            39232..40584
                     /gene="rseP"
                     /locus_tag="OQQ72_000287"
     CDS             39232..40584
                     /gene="rseP"
                     /locus_tag="OQQ72_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HCS2010142.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSLLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            40614..43046
                     /gene="bamA"
                     /locus_tag="OQQ72_000288"
     CDS             40614..43046
                     /gene="bamA"
                     /locus_tag="OQQ72_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HCS2010143.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            43168..43653
                     /gene="skp"
                     /locus_tag="OQQ72_000289"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             43168..43653
                     /gene="skp"
                     /locus_tag="OQQ72_000289"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HCS2010144.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            43657..44682
                     /gene="lpxD"
                     /locus_tag="OQQ72_000290"
     CDS             43657..44682
                     /gene="lpxD"
                     /locus_tag="OQQ72_000290"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCS2010145.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            44787..45242
                     /gene="fabZ"
                     /locus_tag="OQQ72_000291"
     CDS             44787..45242
                     /gene="fabZ"
                     /locus_tag="OQQ72_000291"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HCS2010146.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            45246..46034
                     /gene="lpxA"
                     /locus_tag="OQQ72_000292"
     CDS             45246..46034
                     /gene="lpxA"
                     /locus_tag="OQQ72_000292"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HCS2010147.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            46034..47182
                     /gene="lpxB"
                     /locus_tag="OQQ72_000293"
     CDS             46034..47182
                     /gene="lpxB"
                     /locus_tag="OQQ72_000293"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCS2010148.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            47179..47775
                     /gene="rnhB"
                     /locus_tag="OQQ72_000294"
     CDS             47179..47775
                     /gene="rnhB"
                     /locus_tag="OQQ72_000294"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCS2010149.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMVVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            47812..51294
                     /gene="dnaE"
                     /locus_tag="OQQ72_000295"
     CDS             47812..51294
                     /gene="dnaE"
                     /locus_tag="OQQ72_000295"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCS2010150.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            51307..52266
                     /gene="accA"
                     /locus_tag="OQQ72_000296"
     CDS             51307..52266
                     /gene="accA"
                     /locus_tag="OQQ72_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCS2010151.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSSYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
     gene            52365..54474
                     /gene="ldcC"
                     /locus_tag="OQQ72_000297"
                     /pseudo
     CDS             52365..54474
                     /gene="ldcC"
                     /locus_tag="OQQ72_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
     gene            54531..54920
                     /locus_tag="OQQ72_000298"
     CDS             54531..54920
                     /locus_tag="OQQ72_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS2010152.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            54985..56283
                     /gene="tilS"
                     /locus_tag="OQQ72_000299"
     CDS             54985..56283
                     /gene="tilS"
                     /locus_tag="OQQ72_000299"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HCS2010153.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(56332..56592)
                     /gene="rof"
                     /locus_tag="OQQ72_000300"
     CDS             complement(56332..56592)
                     /gene="rof"
                     /locus_tag="OQQ72_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HCS2010154.1"
                     /translation="MLMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(56579..56779)
                     /locus_tag="OQQ72_000301"
     CDS             complement(56579..56779)
                     /locus_tag="OQQ72_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HCS2010155.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYVNE"
     gene            56945..57490
                     /locus_tag="OQQ72_000302"
     CDS             56945..57490
                     /locus_tag="OQQ72_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HCS2010156.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            57487..57909
                     /gene="arfB"
                     /locus_tag="OQQ72_000303"
     CDS             57487..57909
                     /gene="arfB"
                     /locus_tag="OQQ72_000303"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS2010157.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSAKAMRGKVRSGRE"
     gene            57923..58633
                     /gene="nlpE"
                     /locus_tag="OQQ72_000304"
                     /gene_synonym="cutF"
     CDS             57923..58633
                     /gene="nlpE"
                     /locus_tag="OQQ72_000304"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HCS2010158.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASHGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(58833..59653)
                     /locus_tag="OQQ72_000305"
                     /pseudo
     CDS             complement(58833..59653)
                     /locus_tag="OQQ72_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
     gene            complement(59706..61424)
                     /gene="proS"
                     /locus_tag="OQQ72_000306"
     CDS             complement(59706..61424)
                     /gene="proS"
                     /locus_tag="OQQ72_000306"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCS2010159.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(61535..62242)
                     /gene="tsaA"
                     /locus_tag="OQQ72_000307"
     CDS             complement(61535..62242)
                     /gene="tsaA"
                     /locus_tag="OQQ72_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HCS2010160.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(62239..62643)
                     /gene="rcsF"
                     /locus_tag="OQQ72_000308"
     CDS             complement(62239..62643)
                     /gene="rcsF"
                     /locus_tag="OQQ72_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HCS2010161.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(62761..63576)
                     /gene="metQ"
                     /locus_tag="OQQ72_000309"
     CDS             complement(62761..63576)
                     /gene="metQ"
                     /locus_tag="OQQ72_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HCS2010162.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(63616..64269)
                     /gene="metI"
                     /locus_tag="OQQ72_000310"
     CDS             complement(63616..64269)
                     /gene="metI"
                     /locus_tag="OQQ72_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HCS2010163.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(64262..65293)
                     /gene="metN"
                     /locus_tag="OQQ72_000311"
     CDS             complement(64262..65293)
                     /gene="metN"
                     /locus_tag="OQQ72_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HCS2010164.1"
                     /translation="MIKLSNITKVFHQGTRIIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            65481..66053
                     /gene="gmhB"
                     /locus_tag="OQQ72_000312"
     CDS             65481..66053
                     /gene="gmhB"
                     /locus_tag="OQQ72_000312"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HCS2010165.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITPEAENAADWVLNSLADLPQAIKKQQKPA"
BASE COUNT        15766 a        16433 c        18201 g        15949 t
ORIGIN      
        1 atgggattga tatttatctg cgggaattta tattatgttt ctgcaaaaat gtttaaacta
       61 aaatttttat taaggaaaga gaggatgtat gattttcaga aaatatttat attcgtaata
      121 taaataaatt accatttgct taattcgtca aatgctcttg tatgtaagac ttcacgcaac
      181 gtctccccat caggaaacgc cagctccggt gcaatctcaa acagcggcca cagcataaat
      241 ccacgattct tcatatcgta gtgcggaacg gtcaggcgtt cggtatttat cacttcatta
      301 ccaaacagca tgatatcgag atccagcgtg cgtggtcccc agcgttcagc tttacgaaca
      361 cgatcctgtt gcagttctat gcgctgtgta tggttgagta actcttccgg ggcgagcgaa
      421 gtttcaagcg ccacggcggc gttgaggtaa tcgggttgat cttgcggccc cagcggtgga
      481 gtgcggtaaa acgaagaaac ggcaagaatg tggctttcag ggatatcgcc taatgctttc
      541 agggcagcat tgacctgctc cagcggagag gccagattgc tgcctatggc aatatacgcc
      601 actgtcatgc ggtaccctca cgacgcggtg cgcgtttgcg tggacgacga gtacggcgac
      661 gcggtgacgg ctcttcatcc aactcgttaa gcatcccttt ttgatctggt ggcgcggaaa
      721 cctggaactc accccaccat ttcaccagac gctgcagttc agcgttacgt tcaacttcag
      781 ctcgcaaggc caacaggtca taagccgcac ggaacttagg atgctccagc agtttccatg
      841 cgcgtttacc ctgacgacgg gacatacgca actgcaactg ccagatatcg cgggttaacg
      901 tcgtcagacg tttcgggatt gccagtgaac ggcaggcttc gtccagcacg tcgttcatcg
      961 ccagcgcgaa agcgtcgtga taggtcaggc cgctttcctg ggcgatcttc tgtgccgtct
     1021 ccagcagtgg gtaccagaac atggcggcaa acaagaacgc cgggttcacg cgcatatcgt
     1081 tatggatacg cgtatcggta ttcttcagca cctgttcaat gatccgctcc atcgggctgt
     1141 cgccattttc cgtgaagtag cgggtaatgg tcgggaacag cggctggaac agatgatatt
     1201 cacacaacag cttataggtt tcgtaaccgt agcccgcttg tagcagttta agcgattctt
     1261 caaacaggcg tgccggtggg atatcgttca gcagggtagc gaggcgaggg atcggttctg
     1321 cggtttccgg gctgatgcgc atacccaatt tggcggcaaa acgtaccgcg cgcagcatac
     1381 gtaccggatc ttcacggtag cgcgtttccg ggttaccaat cagacggata acgccgtcct
     1441 tcagatcctt catgccgcca acgtaatcac ggacggtaaa atccgctacg ctgtaataca
     1501 ggctgttgat agtgaaatcg cggcgctggg cgtcttcttc gatggagccg aaaatgttgt
     1561 cgcgcagcaa catgccgttt tgcccgcgtt gggaggtcgt gcggtcgctg acgttacctt
     1621 cgtggtgtcc acggaaggtt gcaacttcga taatctccgg gccaaacatc acatgagcca
     1681 gacggaaacg gcgacccaca aggcggcagt tacggaacag tttgcgcacc tgctcaggcg
     1741 tggcgttagt ggttacgtca aaatctttcg gctttttgcc aagtaacagg tcgcgcacgc
     1801 cgccgccaac cagccaggct tcgtatcccg ctttattgag cctgtacatt accttcaggg
     1861 cattttcact gatatctttg cgggaaatag catgctgctc acgcgggatc accgtcacct
     1921 gtggacgggc gactgcctgt tcagcctcgc tttcctcgcg gcttagcacc ttgcggcaaa
     1981 aattagcgac tcgggtaaaa atagtacacc tcggtagtgt caaacatcat tcaggacaaa
     2041 aaaatagcgg ctaatcatag ctcagcatga cgcatttgag aatgttgaat ttacaattgc
     2101 cgactcgggc acggcggtca gcgtccagtt tttgacggct gactgaagga tttgctcgac
     2161 gctgaaatcc tgccagtgtg cttctacctg ctgccccaga aattgaagtg ccgtgattag
     2221 taccgggcgt ggatcgcctt tcggcaacgc aggcgcatga ttctgcttgg aaagtttagc
     2281 gccttgtgga ttaagcgcca gcggcagatg aatgtaatct ggcactttcc agccaaaaag
     2341 ctggtacagc gagatttgcc ttactgttgg ttcaatcaga tcagccccac gcactatttc
     2401 tgtaacgccc tggaaatgat catcaaccac aacagccagg ttgtaggcga acaacccatc
     2461 acggcgatga atgataaaat cttcccgtgc cagtttttcg tcggcgtgaa taatgccgcg
     2521 cagctggtca gtaaattgcg tgaccggatg ctgctggcgg atacgcactg cggcgttgtc
     2581 tggtccatga tgcaacaccc ggcaatgacc gtcgtaaata ccgacaatgc tttgaatacg
     2641 cgcacgcgta caggtgcagt aataacttag tccttgttca tgtaaccagg cgagtgcttc
     2701 acgataggcg tcgtgacgtt gcgattgcca gagaacatcg ccgtcccagt gcagaccgta
     2761 atgttccagc tggcgcagga tagtttctgc ggcaccggga acttcacgag gcgggtcgat
     2821 atcttctatg cgtaccagcc agcgaccttg ccgggcgcga gcctgcaaat agctgccgag
     2881 cgcggcgatc agagagccaa aatgaagctc gccggaagga gagggggcga agcggccaat
     2941 atactgtgtg tctgtcatct ctttgaacaa aaaataaggc gggagcattt cccgcctgtg
     3001 gtaaacgtga tggaacggct gtaattagcc agccatctgt ttttcgcgaa tttcagccag
     3061 cgttttgcag tcgatgcaca gatcggctgt cgggcgcgct tccagacggc gaataccaat
     3121 ttcaacaccg caggattcgc agtagccgaa atcttcgtct tccacttttt tcagcgtctt
     3181 ctcgatcttt ttgatcagct tacgctcgcg atcgcggtta cgcagttcga ggctgaactc
     3241 ttcttcctgg gctgcacggt ctaccgggtc cgggaagttg gctgcttcat cctgcatatg
     3301 tgtaacggtg cgatcgactt catccctgag ttgattacgc catgcttcca gaatacgacg
     3361 gaagtgcgcc agctgggctt cattcatata ctcttcgccc ggcttctcct gatatggttc
     3421 caccccagcg atggcgagaa tactcaggga cgatgtttta cggttttgcc cttcttgcat
     3481 gttgcttctc cttaacacgc actatcgatc cccatgttcg ggggaaaaat gaggccgcta
     3541 taaatagcag atgcttttcc ggatagcaat tatctaaacg taacacttga caactgtgtg
     3601 aggaaaagcg tatttgcgca cgcgaccaga atgtaaatta accagttact tactttacta
     3661 caatgtaacc ggcagtgatt ttttaagagc catgccttca gcagaaattt ccgctttgta
     3721 agccagaatt tctacccccc tctgttgagc ttctgacaat agttgcgcgt atttctcatc
     3781 gatgtggcgc gcgggtgaaa accgtgtaat ggctgaatgc agcacggcga aaaagataac
     3841 cgcacgctgg ccttcagccg ctacgttcat caactcccga aggtgtttct gacctcgttc
     3901 agtgaccgca tcgggaaaat atccctgttc gttctccgct aacgtaaccg atttcacttc
     3961 aatatagcag tctggacgcg aatccgcctg caacataaag tcaatacggc tgcgttctgc
     4021 gccatatttt acttcgcttt tcagcgagct atagcctgac agttctgaaa ttgattcatt
     4081 aaggatagcc tctttcgtca acctgttagc ccaaagcgta ttgacgcaaa taaatgcgcc
     4141 gctctggctt tgagttagtt cccaggtgtg tgggtatttc cgtttggtgt tgtctgaagt
     4201 cgaataccag acggtatcgc cacgcgttgc acaaccggtc atcgcacccg tattcgggca
     4261 gtgtagcgtt aattcgcgac catcgggtgt gatcacatcg gctaaaaaac gtttgtaacg
     4321 ctgaattagc gtcgcgcgct gtagaagggg agagaattcc attgcgacaa tccttgttat
     4381 tgcattagcg cccagcgttt tagcggcgtg tagcgtgtgc gtccacgggc aaacgaggag
     4441 gcgtaaaggg tgaactccgt caccgcataa gaccagttaa aacctggcgg cgggattgtc
     4501 accgcctcgc tggcgtcgcg caataaggta atatgtggat gaaacggacg attgctttga
     4561 aaacaaccgc tgcgggcagc ctgtgaacgg agcatattcg ccagctggat taagccgcgt
     4621 ggcggctgac gcatccctaa ccacaccaca cgcgaacgca gccattgtcc ggcgtcatca
     4681 agcgtgagtg tgaaaccagg ttgacgaatc cgtccggcta aaagagaaag cgccttctct
     4741 ttctcggcgc tcacttcgcc taaaaatgcc agagtcagat gcaaattatc ggcggcgacc
     4801 ggacgtcccg cctcaggtgg gaagtgtgtg gcgcgccagt ggataatctg ttcgcggatt
     4861 tctgcaggta agtcgatagc aaagaacaga cgttgcggtt cagacatgtg aggcactcgg
     4921 ttatgaatta ccgcgatgct acaatgtggc gcgaagaatg ttaaccctct ggagcgtttt
     4981 gtgtcgtcgt tgcccgttgc tgccgtttta cctgaattac ttaccgctct cgattgtgcg
     5041 ccgcaggtat tattaagtgc gccgaccggg gccgggaaat caacctggct gccgctgcaa
     5101 ctgctggcgc atcccggcat taacgggaaa attatcctgc tggagccgcg tcgtctggcg
     5161 gcgcgtaacg tcgcgcaacg gctggaggag ctgcttaacg aaaagccagg cgataccgtt
     5221 ggctaccgga tgcgtgcgca aaactgcgtc gggccgaata cccgcctgga agtagttacc
     5281 gaaggcgtgc tgacgcggat gatccagcgt gacccggagt tgagcggtgt tggattggtg
     5341 atccttgatg aatttcatga gcgtagcttg caggcggatt tggcgttggc gctgttactc
     5401 gatgtgcaac aaggtctgcg tgatgacctt aaactgctaa ttatgtcggc tacgctggac
     5461 aacgaccgct tgcagcaaat gctgccagaa gcgcccgtcg tcatctcaga agggcgctcg
     5521 tttccggttg aacgccgtta tttaccgctg cccgcgcatc agcgttttga cgatgccgtt
     5581 gcggtagcca ccgctgaaat gctgcgtcag gaaagcggat cattactgtt atttttacct
     5641 ggcgtcggag aaattcagcg tgtgcaggaa caactggctt cgcgcatcgg cagtgatgta
     5701 ttgctctgcc cgctgtatgg cgcgttgtcg ctgaacgatc agcgaaaagc gatcctcccg
     5761 gcaccgcaag ggatgcgcaa agtggtgctg gcgaccaata ttgctgaaac cagtttaacc
     5821 atcgaaggta ttcgtctggt ggtggattgt gcccaggagc gtgtggcgcg ttttgatccg
     5881 cgcacggggc taacgcgact gattactcaa cgcgttagcc aggcatccat gacgcagcgt
     5941 gccgggcgcg ccgggcgtct ggagccgggt atctgcctgc atctaatcgc caaagaacaa
     6001 gcagaacgcg ctgccgcgca aagtgaaccg gaaatcttac aaagcgatct ttccggtttg
     6061 ctgatggaat tactgcaatg gggatgcagc gatccggcgc agatgagctg gctggatcaa
     6121 ccgccaacgg tgaatctact ggccgcgaaa cgcctgttac aaatgctggg ggcgctggag
     6181 ggtgaacggc ttagtgcgca ggggcaaaaa atggcagcgc tgggtaacga tccgcgttta
     6241 gcggcaatgc tggttagcgc gaagaacgac gacgaagctg ctaccgcggc aaaaattgcc
     6301 gccattctcg aagagccgcc acggatgggc aatagtgacc tgggcgtggc gttttcgcgc
     6361 aatcaaccag cttggcagca acgtagtcag caactgttaa aacgcttaaa cgtacgtggc
     6421 ggtgaggcag acagttcgct tatcgcgccg ctacttgccg gggcgtttgc cgatcgcatt
     6481 gctcgtcgcc gtgggcaaga tggacgctat caactggcaa acggcatggg agcgatgctc
     6541 gatgccgacg acgcgctaag ccgccacgaa tggttgatcg caccgttatt attgcagggc
     6601 agcgcctcgc cggatgcgcg gattttactg gcgctgccgg tcgatattga tgagttagta
     6661 caacgctgcc cgcagctggt acagcagtct gacactgtgg agtgggatga cgcgcaaggt
     6721 acgctgaaag cctggcgtcg gctgcaaatc ggtctgctga cggtgaaagt gcagccgctg
     6781 gcgaaaccct cggaagacga gttgcatcag gcgatgctta atggcatccg tgataaaggt
     6841 ttaagcgtgc tcaactggac ggcggaagcg gaacagctac gcttgcgttt gttatgcgcc
     6901 gcaaagtggt tgccggaata tgactggcca gcggttgatg atgaaagttt attggcgacg
     6961 ctggaaacgt ggctgctgcc acatatgact ggcgtacatt cactacgcgg cctgaaatca
     7021 ctcgacattt atcaggcact acgcggatta cttgattggg gaatgcagca acgtctggat
     7081 agtgaattgc ctgcgcatta cactgtgccg acgggaagcc ggatcgccat tcgttatcat
     7141 gaagataacc cgcccgcgct ggcggtgaga atgcaagaga tgtttggcga ggccaccaat
     7201 ccgacgatcg cccaggggcg cgtgccgctg gtgctggagt tgctttcacc tgcccaaagt
     7261 ccattacaaa tcacacgaga tttgagcgcc ttctggaaag gagcgtaccg tgaggtgcaa
     7321 aaagagatga aagggcgtta tcccaaacat gtctggccgg acgacccggc aaatactgca
     7381 ccgacgcgac ggacgaaaaa gtattcgtaa ggttggtttt ctccctctcc ctgtgggaga
     7441 gggccggggt gagggcatca gcgcgcacgt tcaccctcac cctaaccctc tccctcaagg
     7501 gagaggggac cgatcgaaca caaattttga gagatatctt cttctgtctt gtaacagaag
     7561 aacagaaaat cgggcttttg cgcctgaata ttgcggagaa aaagcatggc cgggaatgac
     7621 cgcgagccaa ttggacgcaa agggaaaccg acgcgtccgg tcaaacaaaa ggtaagccgt
     7681 cgtcgttacg aagatgacga tgattacgac gattatgatg actatgagga tgaagaaccg
     7741 atgccgcgca aaggtaaggg caaaggcaaa gggcgtaagc ctcgtggcaa acgcggctgg
     7801 ctatggctac tgctaaaact ggctatcgtt tttgccgtgc tgatcgccat ttacggcgtt
     7861 tatctcgatc aaaaaattcg tagccgtatt gatggcaagg tctggcaact gcctgcagca
     7921 gtttatggcc gaatggtcaa tcttgagcca gatatgacca tcagcaagaa cgagatggtg
     7981 aagctgctgg aggcgactca gtatcgtcag gtgtcgaaaa tgacccgtcc tggcgaattt
     8041 accgtgcagg ccaacagcat tgagatgatc cgccgtccgt ttgatttccc ggacagtaaa
     8101 gaagggcagg tgcgtgcgca tctgaccttt gatggtgatc atctggcgac catcgtcaat
     8161 atggagaaca accgtcagtt cggctttttc cgtcttgatc cgcgtctgat caccatgatc
     8221 tcctcgccaa acggtgagca acgtctgttt gtgccgcgca gtggtttccc tgatttgctg
     8281 gtggatactt tgctggcgac agaagaccgc catttctacg agcatgatgg gatcagcctc
     8341 tactcaattg ggcgtgcggt gctggcaaac ctgaccgcag gtcgcacggt gcagggtgcg
     8401 agtacgctga cgcaacagct ggtgaaaaac ctgttcctct ccagcgagcg ctcttactgg
     8461 cgtaaagcga acgaagccta catggcgctg atcatggacg cgcgttacag caaagaccgt
     8521 attcttgagc tgtatatgaa cgaggtgtat ctcggtcaga gcggcgacaa cgaaatccgc
     8581 ggcttcccgc tggcaagctt gtattacttt ggtcgcccgg tagaagagct aagcctcgac
     8641 cagcaggcgc tgttagtcgg tatggtgaaa ggggcgtcca tctacaaccc gtggcgtaac
     8701 ccgaaactgg cgctggagcg acgtaatctg gtgctgcgtc tgctgcaaca gcaacagatt
     8761 attgatcaag aactctatga catgttgagt gcccgtccgc tgggggttca gccgcgcggt
     8821 ggggtgatct ctcctcagcc agcctttatg caactggtgc gtcaggagct gcaggcaaaa
     8881 ctgggcgata aggtaaaaga tctctccggc gtgaagatct tcactacctt tgactcggtg
     8941 gcccaggacg cggcagaaaa agccgccgtg gaaggcattc cggcactgaa gaaacagcgt
     9001 aagttgagcg atcttgaaac tgcgattgtg gtcgtcgacc gctttagtgg tgaagttcgt
     9061 gcgatggtgg gaggttctga gccgcagttt gcgggctaca accgtgcgat gcaggcgcgt
     9121 cgttcgattg gttcccttgc aaaaccagcg acttatctga cggctttaag ccagccgaaa
     9181 atctatcgcc tgaacacgtg gattgccgat gcgccaatcg cgctgcgtca gccgaatggc
     9241 ctggtctggt caccgcagaa cgatgaccgt cgttatagcg aaagcggcag agtgatgctg
     9301 gtggatgcgt tgacccgttc gatgaacgtg ccgacggtaa atctggggat ggcgctgggg
     9361 ctgcctgcag ttacggatac ctggatcaaa ctgggcgtac cgaaagatca gctgcatccg
     9421 gttccggcga tgctgctggg ggcgttgaac ttaacgccaa tcgaagtggc gcaggcgttc
     9481 cagaccatcg ccagcggtgg taaccgtgca ccgctttctg cactgcgttc ggtaatcgcg
     9541 gaagatggca aggtgctgta tcagagcttc ccgcaggcag aacgcgctgt tccggcgcag
     9601 gcggcgtatc tgacactatg gaccatgcag caggtggtac aacgtggtac gggtcgtcag
     9661 cttggggcga aatacccgaa cctgcatctg gcagggaaaa cagggactac caacaataac
     9721 gtagatactt ggtttgcagg cattgacggc agcacggtga ccatcacctg ggcaggccgt
     9781 gataacaacc agccgaccaa actgtatgga gccagcgggg caatgtcgat ttatcagcgt
     9841 tatctggcta accagacgcc aacgccgctg aatcttgttc cgccagaaga tattgcagat
     9901 atgggcgtgg actacgacgg caactttgtt tgcagcggtg gcatgcgtgt cttgccggtc
     9961 tggaccagcg atccgcaatc gctgtgccag cagagcgaga tgcagcagca gccgtcaggc
    10021 aatccgtttg atcagtcttc tcagccgcaa cagcaacctg ctcagcaaga gcagaaagac
    10081 agcgacggtg tagccggttg gatcaaggat atgtttggta gtaattaaca tctaagcgtg
    10141 aaataccgga tggcgagttg ccatccggta aaataacatc ccatctaaga tattaaccct
    10201 ttcttttcat ctggttgttt attaaccctt caggaacgct cagattgcgt accgcttgcg
    10261 aacccgccag cgtttcgaat attatcttat ctttataata atcattctcg tttacgttat
    10321 cattcacttt acatcagaga tataccaatg gcgcgttcca aaactgctca gccaaaacac
    10381 tcactgcgta aaatcgcagt tgtagtagcc acagcggtta gcggcatgtc tgtttatgca
    10441 caggcagcgg ttgaaccgaa agaagacact atcaccgtta ccgctgcacc tgcgccgcaa
    10501 gaaagcgcat gggggcctgc tgcaactatt gcggcgaagc actctgctac tgcgactaaa
    10561 acggatacac caattgaaaa aacgccgcag tctatttcgg ttgtgacaaa tgaagagatg
    10621 cagatgcatc aatttcagtc tgtaaaagaa gcattaggtt atacacctgg cgttacggtt
    10681 agcagtcgtg gtgcttctaa tacatatgat tttgttatca ttcgtggttt ctcatctgtt
    10741 ggtctgaatc aaaataatta ccttgatgga ctaaaacttc agggcaactt ttataacgat
    10801 gctgtgattg atccttacat gctcgagagg gttgaactga tgcgtgggcc gacgtctgtt
    10861 ctctatggaa aaagtaatcc tggtgggatt atttctatgg tgagtaagcg tccgaccact
    10921 gaacccctga aagaaattca gtttaaaatg gggacggata atctgtttca gaccggattc
    10981 gatttcagtg atgcactgga tgataacggt gagttctctt accgtttgac gggcctcgct
    11041 cgctcaacaa acgaacagca gaaaaactct gaatctcagc gttataccat tgctccatca
    11101 ttctcatggc gtccagacga caaaaccaat tttactttcc tgtcctattt ccagaatgaa
    11161 ccagaaacgg gttattacgg ttggttgccg aaagagggga ccgttgagcc attgcctaat
    11221 ggtaagcgtc taccgactga cttcaatgaa ggtgcatcga ataatacata ctcccgtaac
    11281 cagaaaatgg tgggatatag ttttgaacat ggttttaatg acaccttcac cgtgcgtcag
    11341 aatctgcgtt tcagtgaaat gaaaacctca cagaaaagtg tttatggcac agggattgct
    11401 ggtgatggtc ataccctaaa ccgcgggaca gtggtggata atgagcgtct acaaaacttt
    11461 agcgttgata cccaacttga aagtaagttt gctacaggtg acgtcgagca tactttgctg
    11521 acaggggtag acttcatgcg gatgcgtaat gatatcaatg ccagctttgg atccgcacca
    11581 tccatcgatc tttataacaa atatcaccct gaatactttg catttggtag cgcagagcca
    11641 taccagatga atgaaagcaa acaaacaggt atttatgttc aggatcaggc ggaatggaat
    11701 aaatgggtat tcactctggg gggacgctac gattggtcta agcaagcgac cactgttcgt
    11761 gaaaactctt atacgccgac tgaaggttat attgagcgca atgatcatca gttcacctgg
    11821 cgcggtggtg taaattactt attcgataat ggtatttcac cttactttag ctatagccag
    11881 tcctttgaac cgagtgcttt cgatctgtgg agcaacccac gcatttccta taagccatcg
    11941 aaaggtgaac agtatgaagc tggcgtaaaa tatgttccga atgatatgcc ggtcgttgtt
    12001 acgggcgcag tctatcaatt gacgaaaaca aataacctga cagcagaccc aacaaaccca
    12061 ttagcgcaag tcccagcagg tgagattcgc gctcgtggtg tggaacttga agcaaaagcg
    12121 gcgttaaatg ccaatattaa cttgacggct tcttatacct acaccgatgc ggaatacacc
    12181 aaagacacca atctcaaagg taaaactcca gaacaagtac cggagcatat ggcatctctc
    12241 tggggggatt ataccttcaa tgaagggccg ctttctggtt taacattggg aacaggtggt
    12301 cgttttattg gttccagcta tggtgatccg gcaaacactt ttaaagtggg tagcgcagct
    12361 gtaatggatg ctgttgtaaa atatgatctg gcacgctttg gtatggcggg atccagcctt
    12421 gctgtgaacg tcaacaattt gctcgatcgt gagtatgttg ccagttgctt ccagacttat
    12481 ggctgcttct ggggcgcaga acgtcaggtc gttgcaaccg caaccttccg tttctaattt
    12541 ctcttttggg gcacggattt ccgtgcccat ttcacaagtt ggctgttatg caggaataca
    12601 cgaatcattc cgataccact tttgcactgc gtaatatctc ctttcgtgtg cccgggcgca
    12661 cgcttttgca tccgctgtcg ttaacctttc ctgccgggaa agtgaccggt ctgattggtc
    12721 acaacggttc tagtaaatcc actctgctca aaatgcttgg ccgtcatcag cctccgtcag
    12781 aaggggagat tcttcttgat gcccagccgc tggaaagctg gagcagcaaa gcgtttgccc
    12841 gcaaagtggc ttatttgccg cagcagcttc ctccggcaga agggatgacc gtgcgtgaac
    12901 tggtggcgat tggtcgttac ccgtggcatg gcgcgctggg gcgctttggg gcggcagatc
    12961 gcgaaaaagt cgaggaagct atctcgctgg ttggcttaaa accgctggcg catcggctgg
    13021 ttgatagtct ctctggcggc gaacgtcagc gggcgtggat cgccatgctg gtggcgcagg
    13081 atagccgttg tctgttgctc gacgaaccga cctcggcgct ggatatcgcc caccaggttg
    13141 atgtgctggc gctggtgcac cgtttaagtc aggagcgtgg cctgacggtc attgccgtgt
    13201 tgcacgatat caatatggcg gcacgctact gtgattatct ggtcgccctg cgcggtggtg
    13261 aaatgattgc tcagggaacg cctgcggaaa ttatgcgcgg cgataccctc gaaatgattt
    13321 atggcatccc gatgggtatt ttgccgcatc cggcgggtgc tgcacctgtg agttttgttt
    13381 attgatgagc ggcttacctc ttatttcgcg ccgtcgactg ttaacggcga tggcgctttc
    13441 tccgttgtta tggcagatga ataccgccca cgcggcggct attgatccca atcgtattgt
    13501 ggcgctggag tggttgccgg tggaattact gctggcgctc ggcatcgtgc cttacggcgt
    13561 agcggatacc atcaactatc gcctgtgggt cagcgaacca ccattgccgg actcagtgat
    13621 cgacgtcggt ttgcgcacag aacctaacct tgaactgctg accgaaatga aaccgtcgtt
    13681 tatggtctgg tcggcaggat atggcccttc agcagaaatg ctggcacgta ttgcgccggg
    13741 gcgtggattt aacttcagcg acggcaaaca gccgctggcg atggcgcgta aatcactgac
    13801 ggaaatggca gatttactta acctgcaaag cgcagcagaa acgcatttag cgcaatatga
    13861 agactttatc cgcagcatga aaccccgctt tgtgaagcgt ggtgcacgcc cgttattgct
    13921 gacgacgctt atcgatccgc gccatatgtt ggtcttcggt ccaaacagct tgttccagga
    13981 aattcttgat gagtacggca tcccaaatgc ctggcaaggg gaaaccaact tctggggcag
    14041 taccgccgtc agtatcgatc gtctggcagc gtataaagac gttgatgtgc tctgttttga
    14101 tcacgacaac agcaaagaca tggatgcgct aatggcaacc ccgctgtggc aggccatgcc
    14161 gtttgtccgc gccggacgct ttcagcgcgt acccgcagtc tggttttatg gtgcgacgct
    14221 ctcggcaatg cactttgtgc gcgttctgga taacgccatc ggaggtaaag cgtgagtaaa
    14281 cgaattgcgc ttttcccggc gttattgctg gcgctgctgg tgattgtcgc tacggcgctg
    14341 acctggatga acttttcgca ggcgctgccg cgtagccagt gggcgcaggc cgcctggtcg
    14401 ccggatattg acgtcatcga gcagatgatt tttcactaca gcttgctgcc gcgtctggcg
    14461 atttcgctgc tggtgggcgc aggcctgggg ctggtgggcg tgctgtttca gcaagtgctg
    14521 cgtaatccgc tggcggaacc gacgacactt ggcgttgcta caggcgcgca actggggatt
    14581 accgtcacta cgctctgggc gatcccaggg gcgatggcga gtcagtttgc tgcgctggcg
    14641 ggcgcttgcg ttgttggctt aatcgtcttt ggcgtcgcgt gggggaaacg gctttcgccg
    14701 gtaacgctga tcctcgcggg gctggtagtg agcctttatt gtggggcaat caatcagtta
    14761 ctggttatct tccaccatga ccaactgcaa agcatgttcc tgtggagcac cggaacgctg
    14821 acgcaaaccg actggggcgg tgttgagcgt ttatggccgc agttgctggg cggtgtgatg
    14881 ctgacgttgc tgctacttcg cccgttaacc ctgatggggc ttgatgatgg cgtggcgcgc
    14941 aatctcgggc tggccttgtc gctcgcgcgt ctggcggcgc tgtcgctggc gattgtcatc
    15001 agtgcgctgc tggtgaacgc ggtggggatt atcggcttta tcgggttgtt tgcgccgttg
    15061 ctggcaaaaa tgctgggggc gcggcgtctg ctgccgcgac tgatgctggc gtcgttgatt
    15121 ggtgcgctga tcctctggct ttccgatcaa atcatcctct ggctgactcg cgtgtggatg
    15181 gaagtgtcca ccggttcggt cactgcgttg atcggtgcgc cgctgctact gtggctgttg
    15241 ccgcgtttac gcagcattag cgcgccggat atgaaggtca acgatcgtgt cgcggctgaa
    15301 cgccaacatg tgctggcgtt tgccctcgcg ggcggcgtgc tgctgttgat ggctgtggtg
    15361 gtggcgctgt cgtttggtcg tgatgcgcac ggctggatgt gggcgagcgg ggcgttgctc
    15421 gatgatttaa tgccctggcg ctggccgcga attatggcgg cgctatttgc gggcgtcatg
    15481 ctggcggtgg cgggctgtat tattcagcga ctgaccggca acccgatggc aagcccggaa
    15541 gtgctgggga ttagctccgg cgcagcgttt ggcgtggtac tgatgctgtt tctggtaccg
    15601 ggtaatgctt ttggctggct gttacccgcg ggaagtatcg gtgccgcggt gacgctgttg
    15661 attattatga tcgccgccgg gcgcggtgga ttttccccac accgcatgtt actggcgggg
    15721 atggcgttaa gtaccgcatt caccatgctt ttaatgatgt tgcaggcgag tggtgacccg
    15781 cgaatggcgc aagtgctcac ctggatctct ggttcgacct acaacgccac cgatgcgcag
    15841 gtctggcgta ccggaattgt gatggtgatt ttgctggcga ttaccccgct gtaccgccgc
    15901 tggctgacca ttttacctct gggcggtgat accgcacgag ctgtgggaat ggcgctgacg
    15961 ccgacgcgaa ttgcgctgct gctgttagcg gcttgcctga cggcgacctc gacgatgact
    16021 attggaccgt tgagttttgt tggtttaatg gcaccgcata ttgcgcggat gatgggtttt
    16081 cgacggacga tgccacacat cgtaatttcg gcgctggtgg gtggtttact gctggtattc
    16141 gctgactggt gtgggcggat ggtgctgttt ccattccaga tcccggcggg gctgctgtcg
    16201 acctttatcg gcgcgccata ttttatctat ttgttgagaa agcagagccg ttaattgagt
    16261 gcctcgcccg gtgggcgagg caaaattatc acaacttcgc aaatacccga cgtgcagcat
    16321 cgatggtgtt attgatatct tccatgctgt gcgccacaga cataaagccc gcttcaaacg
    16381 ctgacggtgc caggtaaaca ccttcgtcca gcatcatatg gaagaaacgc ttaaagcgtt
    16441 ccacgtcaca ggccatcaca tcctgatagc acgtcacgga ctcggcgtcg gtaaagaaaa
    16501 taccgaacat gccgccaacg tggttaacga ccagcggagt tccggcttct tctgccgctt
    16561 ccagcagacc ttctgccaga cgtgttgtca gctcatccag cgtttcgtga acgcccggct
    16621 gcgcgacttc attcagacag gcgaaacccg ctgccatcgc aatcgggtta ccggaaagcg
    16681 tacccgcctg atagaccgga cccgtcgggg ccagcgcatc cattacatca cgacgaccac
    16741 cgaatgcgcc taccggcatt ccaccgccga tgattttgcc gaggcaggtt aaatctggca
    16801 ctacgccgta ataatcctgt gcgccagcca gtgccacgcg gaagccggtc atcacttcat
    16861 cgatgatcag caacgcgcca aattcgtcgc acagcgcacg cagacctggc aggaactctg
    16921 gctgcggcgg aacacagttc atattgcctg ccaccggctc gacgataata caggcaatct
    16981 cttgcgggta ttgctcaaac gcggcgcgta cagaagccag atcgttataa gtacaggtta
    17041 aggtatgttt ggcgaaatct gccggaacac ccggcgagtt tggctggcct aacgtgagtg
    17101 cgccagaacc ggctttcacc agcaggcagt cagcgtgacc gtggtaacaa ccttcaaatt
    17161 taatgatttt gtcgcgaccg gtaaaaccac gggccaggcg gatggcgctc atggtcgctt
    17221 cagtgccgga gttcaccatg cgcaccatat ccatggtcgg gaccagttcg gtcaccagtt
    17281 gcgccatttt cacttccatt tcggtcggtg caccaaagct taaaccacgc tcggcggctt
    17341 caatcacggc attgcggata gccggatggt tatggcccag caccatcggc ccccaggaac
    17401 cgacataatc gatataggct ttgccatcaa catcgtacag ataagcgccg tccgcttttt
    17461 cgataaacag tggagtgccg cccacgccag taaaggcgcg aacaggggag ttcacaccgc
    17521 cagggagcag ctcgcgcgct gcgctgtaaa gattttcaga cttactcatg gagggttcct
    17581 gattcgtaga aaaagtgaat ggctgctatt ctatgttatt cataacaagt taaatactcg
    17641 tcaaacatca ggctgcttgt actggtgcaa tcctgatttc ttagagtata aaagttttgt
    17701 gcatttgaaa cattacgctt tgcaaaggat tttcatggaa cgtgcgagta aaatgccgtc
    17761 atcttatttg tatgaccaat aagtgatcat tggatgaaaa ctgatactcc ctctttagaa
    17821 acaccgcagg ccgcgcgcct gcgacgcaga caactgattc gccaacttct tgagcgcgat
    17881 aaaaccccgt tagccatttt gtttatggcg gcagtcgtcg gcacgcttgt cgggctggca
    17941 gcggttgctt ttgacaaagg tgtcgcctgg ttgcagaacc aacgtatgga ggcgctggta
    18001 catactgctg ataattatcc gcttctgtta accgtcgctt ttctctgttc ggcggtgctg
    18061 gcgatgttcg gctacttttt ggtgcgcaaa tacgcgccgg aagcaggtgg ttcggggatc
    18121 ccggaaattg aaggggcgct ggaagatcaa cgtcccgttc gctggtggcg tgtgttgccg
    18181 gtgaaattct ttggcgggct ggggacactc ggcggaggca tggtgctggg gcgcgaaggg
    18241 ccaaccgtgc agatcggcgg caatatcggt cgcatggtac tcgatatttt ccgcctgaaa
    18301 ggtgatgaag ctcgccatac gctgctggca accggtgctg ctgcggggct ggctgcggcc
    18361 tttaacgcgc cgctggcggg tattttgttt attatcgaag agatgcgtcc gcagtttcgc
    18421 tatacgttaa tttcgattaa agcggtattt attggcgtca ttatgtcgac cattatgtac
    18481 cggattttta atcatgaagt tgcgttgatt gacgtcggta aactttctga tgcgccgctt
    18541 aatacgctgt ggctttatct gatcctcggt attatttttg gcattttcgg ccctattttt
    18601 aataaatggg tgctggggat gcaggatttg ctgcaccgtg tgcacggcgg caatattacc
    18661 aaatgggtgc taatgggcgg tgcgattggc ggtctgtgtg gattgctggg gtttgtggca
    18721 ccagcaacgt cgggcggcgg ttttaacctg attcctatcg ctaccgcagg gaatttcagc
    18781 atgggaatgc tggtgtttat cttcgtcgcg cgggtcatta ccaccttact gtgcttctct
    18841 tccggcgcgc cgggcggtat ttttgccccg atgctggcgc tgggtactgt gctgggaacc
    18901 gctttcggaa tggttgtcgt tgagctgttt ccgcaatatc accttgaggc ggggactttt
    18961 gctattgccg gaatgggggc gttactggcg gcatctattc gcgcgccgtt aacggggatc
    19021 attttggttc tggagatgac cgataactac cagctcattt tgccaatgat tattaccggt
    19081 cttggcgcaa cactattagc gcaatttacc ggcgggaaac cgctatattc ggagattctt
    19141 gcgcgcacgc tggcaaaaca ggaagctgag caactggcgc gaagcaaggc cgcatcagcc
    19201 agcgagaata cttgaacgaa ataccagggt attagataat ggcgattatt attgggttag
    19261 aatttgccca attgccgatg tcgtttggag caaaatatga gtgatgacgt agcactgccg
    19321 ctggagttta ccgacgcagc agccaacaaa gttaaaagcc tgatcgctga cgaagataac
    19381 ccgaatctga aattacgcgt gtatatcacc ggtggcggtt gcagcggctt ccagtatggt
    19441 ttcacctttg atgatcaggt gaacgaaggc gatatgacca tcgaaaaaca gggcgttggc
    19501 ctggtggttg atccgatgag cctgcaatat ctggtcggtg gttccgttga ctataccgaa
    19561 ggactggaag gttctcgttt catcgtgacc aacccgaacg cgaaaagcac ctgcggttgc
    19621 ggttcttcct ttagcatcta atctgttgtt catgtgccgg ataaactatc cggcacatct
    19681 tctctcttca acgcccattc tcatccagcg caaacgtcgg tagcttaaga tgccaacgaa
    19741 tagccgccag ccgaatcaat agcgtcacga ccatgcccat catactggct gtttccagtg
    19801 gtacggaaaa tgtgtaataa gccgtagcgt ggacaatacc gccgataata caggcagttg
    19861 cgtagatttc tgtacgtaaa atcatgggga tttcgcgggc cagtacatca cgaatgatcc
    19921 cgccgccaac gccagtaatg acgcccatac aaaccgcgat taacggaccg gcttccgcat
    19981 taaaggcttt attcacgcca atgccgacaa acaccgccag accaacggcg tccagcaccg
    20041 gcaacatcca ttttggtaag cgtcttggct ggcgcaccag cacgatggtc agcatgctgg
    20101 ttaccattgc aacgaccaga tcggtgggat ctttcaccca aaataccggg ccgtgatcca
    20161 gcgccatgtc gcgaattgtc ccgccgccta cagcggtaac cacgcccagt accagaacac
    20221 caaaagggtc catacgcaat tttccggcta acaaaacgcc ggagatggca aataccactg
    20281 tgccgactat atccagccaa tagacgagca ttgttcaatc cccactgagc acctaaaaag
    20341 gtcaggcgct aatctacctg tgaaagcgca ttacagagct gttgtgcagc gaggataata
    20401 cgtgggcttg cacgtcaaac cagtcactcg tgagaggaat aacgggaatt ttgagctgtt
    20461 caccccagta ttgtttgatt ttaggaattt ggtccggtcc gcctgtaatg acaatcgcct
    20521 gtggcgagcg tgctaacacc tgttcgcggc taacttgcgg ccaaggaacc cggctgtctt
    20581 taaagatgtt ttctccgcca caaacttcga gtacctggtt ttgaatcgac tcttttccac
    20641 tggtaaatgg cggattaatg ccgaattgca gaaaaacacg ttttttaggt ttatcagcat
    20701 attgcgcttt caattgcgcg tactgatcca gcagggattg cgcggcttgt tcggccttat
    20761 ccggttgcgg actccagggg gccagttgac gtaacgcatt ggcaatttgt tcaatgcttg
    20821 tcgcatcgac ccacatcact tttattcccg gcgaagccag ctggtcaacc tgccgctcgg
    20881 cattacctcc acgccaggca atcaccagat cgggtttcag cgcgacaatg cgttccagat
    20941 tcatcccctg ccaggtggaa acctgctcaa tcttttgcgc ttgtggagga tagtcggaat
    21001 agctgctgac cccaaccggc gtgatcccgg cggcaaaggc aagttcagtg ttggcgggag
    21061 aaagcgtgat gacgcgcggt gccgcgttga gccacagtgg cgcgagaaaa gacagggcga
    21121 ccagcgccct gaacagtgac ttagccatgt gccagtttct gcaccagtga ctcaaccatc
    21181 aggctggact gtttagcggc aacagccagg aactcatcga agctaagatg agactgttga
    21241 tcggccacgt cggagatggc gcgtacgaca acaaacggga cgttgaaatt gtggcagaca
    21301 tgggcgattg ccgtcgcttc catctctaca gcaatggcct gtgggaagtt gtggcggatt
    21361 ttcgccagac caacagaacc gttgatgaaa gcgtcgccgc taacaatcag gccacgtaca
    21421 gcgttaagat tcagttcggc aatgcaggcc tcagcggcag cgatcagttt atcgtcagct
    21481 ttaaagcctg ccggacagcc tggtaactga ccgtattcat aaccaaatgc cgtgacatcc
    21541 gcgtcgtgat aacgtgcttc gtccgagaca acgatatcgc ccactttcaa cgttggtgcc
    21601 aggccaccgg cagaaccggt gttaataatc acatctggct tgccgtgttc caacagcaaa
    21661 gtggcaccca gcgccgcagc gactttaccg atgcccgatt tcagaagcgc aacctcggtt
    21721 ccattcagtt ggccggtata gatttcgcaa ccgccgagac tgatagtttg acgattttcg
    21781 attttgtcac gcagcagcgt aacttcttct tccattgcac caatgatgcc gattttcata
    21841 gatttactcg cgataagccc gatttgaagg catagtttac catgcgctta cggggaagcg
    21901 tatttctcac gcgggagagg acatggcaca gattgatttc cgaaaaaaaa taaactggca
    21961 tcgtcgttac cgttcaccgc agggcgttaa aaccgaacat gagatcctgc ggatcttcga
    22021 gagcgatcgc gggcgtatca tcaactctcc ggcaattcgt cgtctgcaac aaaagaccca
    22081 ggtttttcca ctggagcgca atgccgccgt gcgcacgcgt cttacccact cgatggaagt
    22141 ccagcaggtg gggcgctaca tcgccaaaga aattctaagc cgtatgaaag agcttaaatt
    22201 actggaagca tacggcctgg atgaactgac cggccccttt gaaagcattg ttgagatgtc
    22261 atgcctgatg cacgatatcg gcaatccgcc gtttggtcat tttggcgaag cggcgataaa
    22321 tgattggttt cgccagcgtt tgcacccgga agatgccgaa agccagcctc tgactgacga
    22381 tcgctgcagc gtggcggcac tacgtttacg ggacggggaa gaaccgctta acgagctgcg
    22441 gcgcaagatt cgtcaggact tatgtcattt tgaggggaat gcacaaggca ttcgtctggt
    22501 gcatacattg atgaggatga atctcacctg ggcacaggtt ggcggtattt taaaatatac
    22561 ccgtccggcg tggtggcgtg gcgaaacgcc tgagacacat cactatttaa tgaaaaagcc
    22621 gggttattat ctttctgaag aagcctatat tgcccggttg cgtaaagaac ttaatttggc
    22681 gctttacagt cgttttccat taacgtggat tatggaagca gccgacgaca tctcctattg
    22741 tgtggcagac cttgaagatg cggtagagaa aagaatattt accgttgagc agctttatca
    22801 tcatttgcac gaagcgtggg gccagcatga gaaaggttcg ctcttttcgc tggtggttga
    22861 aaatgcctgg gaaaaatcac gctcaaatag tttaagccgc agtacggaag atcagttttt
    22921 tatgtattta cgggtaaaca ccctaaataa actggtaccc tatgcggcac aacgatttat
    22981 tgataatctg cctgcgattt tcgccggaac gtttaatcat gcattattgg aagatgccag
    23041 cgaatgcagc gatcttctta agctatataa aaatgtcgct gtaaaacatg tgtttagcca
    23101 tccagatgtc gagcagcttg aattgcaggg ctatcgggtc attagcggat tattagagat
    23161 ttatcgtcct ttattaagcc tgtcgttatc cgactttact gaactggtag aaaaagaacg
    23221 ggtgaaacgt ttccctattg aatcgcgctt attccacaaa ctctcgacgc gccatcggct
    23281 ggcctatgtc gaggctgtca gtaaattacc gtcagattct cctgagtttc cgctatggga
    23341 atattattac cgttgccgcc tgctgcagga ttatatcagc ggtatgaccg acctctatgc
    23401 gtgggatgaa taccgacgtc tgatggccgt agaacaataa ccaggctttt gtaaagacga
    23461 acaataaatt tttacctttt gcagaaactt tagttcggaa cttcgcgcta taaaacgaat
    23521 ctgaagaaca cagaaatttt gcgttatctg ttaatcgaga ctgaaataca tgaaaaaaac
    23581 cacattagca ctgagtgcac tggctctgag tttaggtttg gcgttatctc cgctctctgc
    23641 aacggcggct gagacttctt cagcaacgac agcccagcag atgccaagcc ttgcaccgat
    23701 gctcgaaaag gtgatgcctt cagtggtcag cattaacgta gaaggtagca caaccgttaa
    23761 tacgccgcgt atgccgcgta atttccagca gttcttcggt gatgattctc cgttctgcca
    23821 ggaaggttct ccgttccaga gctctccgtt ctgccagggt ggccagggcg gtaatggtgg
    23881 cggccagcaa cagaaattca tggcgctggg ttccggcgtc atcattgatg ccgataaagg
    23941 ctatgtcgtc accaacaacc acgttgttga taacgcgacg gtgattaaag tccagctgag
    24001 cgatggccgt aagttcgacg cgaagatggt cggcaaagat ccgcgctctg atatcgcgct
    24061 gatccaaatc cagaacccga aaaacctgac cgcaattaag atggcggatt ctgatgcact
    24121 gcgcgtgggt gattacaccg tagcgattgg taacccgttt ggtctgggcg agacggtaac
    24181 ttccgggatt gtctctgcgc tggggcgtag cggcctgaat gctgaaaact acgaaaactt
    24241 catccagacc gatgcagcga tcaaccgtgg taactccggt ggtgcgctgg ttaacctgaa
    24301 cggcgaactg atcggtatca acaccgcgat cctcgcaccg gacggcggca acatcggtat
    24361 cggttttgca atcccgagca acatggtgaa aaacctgacc tcgcagatgg tggaatacgg
    24421 ccaggtgaaa cgcggtgagc tgggtattat ggggactgag ctgaactccg aactggcgaa
    24481 agcgatgaaa gttgacgccc agcgcggtgc tttcgtaagc caggttctgc ctaattcctc
    24541 cgctgcaaaa gcgggcatta aagcgggtga tgtgatcacc tcactgaacg gtaagccgat
    24601 cagcagcttt gccgcactgc gtgctcaggt gggtactatg ccggtgggca gcaaactgac
    24661 cctgggctta ctgcgcgacg gtaagcaggt taacgtgaac ctggaactgc agcagagcag
    24721 ccagaatcag gttgattcca gctccatctt caacggcatt gaaggcgctg agatgagcaa
    24781 caaaggcaaa gatcagggcg tggtagtgaa caacgtgaaa acgggcactc cggctgcgca
    24841 gatcggcctg aagaaaggtg atgtgattat tggcgcgaac cagcaggcag tgaaaaacat
    24901 cgctgaactg cgtaaagttc tcgacagcaa accgtctgtg ctggcactga acattcagcg
    24961 cggcgacagc accatctacc tgttaatgca gtaatctcac tcaacccctt cctgaaaacg
    25021 ggaaggggtt ctccttacaa tctgtgaact tcaccacaac tccatacatc ttcatcatcc
    25081 tttaggcatt tgcacaatgc cgtacgttac gtacttcctt atgctaagcc gtgcataacg
    25141 gaggacttat ggctggctgg catcttgata ccaaaatggc gcaggatatc gtggcacgta
    25201 ccatgcgcat catcgatacc aatatcaacg taatggatgc ccgtgggcga attatcggca
    25261 gcggcgatcg tgagcgtatt ggtgaattgc acgaaggtgc attgctggta ctttcacagg
    25321 gacgagtcgt cgatatcgat gacgcggtgg cacgtcatct gcacggtgtg cggcaaggga
    25381 ttaatctacc gttacggctg gaaggtgaaa ttgtcggcgt aattggcctg acaggtgaac
    25441 cagagaatct gcgtaaatat ggcgaactgg tctgcatgac ggctgaaatg atgctggaac
    25501 agtcgcggtt gatgcacttg ttggcgcagg atagccgttt gcgggaggaa ctggtgatga
    25561 acctgattca ggcagaggag aatactcccg cacttactga atgggcgcaa cggctgggga
    25621 tcgatctcaa tcaaccgcga gtggtggcta ttgttgaggt cgacagcggt cagcttggtg
    25681 tggacagcgc aatggcggag ttacaacaac tgcaaaacgc gctgactacg cccgagcgta
    25741 ataatctggt ggcgattgtc tcgctaaccg aaatggtggt gttgaaaccg gcgttgaact
    25801 cttttgggcg ctgggatgca gaagatcatc gtaagcgagt tgaacaactg attacccgca
    25861 tgaaagagta cggccggctg cgttttcgcg tttcactggg caactatttt accggtcctg
    25921 gcagtattgc ccgatcctat cgtacggcga aaacgacgat ggtggtgggt aaacagcgga
    25981 tgccagaaag tcgctgctat ttttatcagg atctgatgtt acctgtgtta ctcgacagtt
    26041 tgcgtggcga ctggcaggcc aacgaactgg cgcgaccgct ggcgcggctg aaagcgatgg
    26101 acaataacgg cttgctgcga cgaacgctgg cggcgtggtt tcgtcacaat gtgcaaccgc
    26161 tggcaacgtc aaaggcgttg tttatttatc gtaataccct ggagtatcgg cttaatcgta
    26221 tatcggaact gaccgggctt gatttgggca attttgatga caggttgctg ctgtatgtgg
    26281 cgttacaact ggatgaagag cggtaggtta tgcgttaagg ttgaggcggc gctgtctcat
    26341 ttccctcagc ccgaagggga gaggggaatg cccgaattaa ccgtcaattc gggattattt
    26401 acgcgttagt ttttccagat cggcttcaat ctcgctgatc ttattggtta cgactgactc
    26461 caggtgacgt aagtcgtcga ggatcttacg cttaagatca acttcgctgc ggtcacgctg
    26521 gcagatttga tcaagctcat caatgatata ccgtagattc gggctgattt cctggacttc
    26581 tttataaccc tgacccacac catcagcgac gaccgtttta cgctgacgcg gatatttaaa
    26641 cttaacgctc ttggcgaaaa actcgccttt gtctttctgg aaatagattt tcagaatatc
    26701 gttgttggct tcctgccgga ggctgtaacg atcaatttct tcaggattgg taatacccag
    26761 acttttcaga ttgtcgtaca tagcgttacc tcaaaatgag tcagtaaatt gtgcttattt
    26821 tagcatttgg cctagcccgc ccggctcgac tgtgatcgca gaaagccttt ttcttccaga
    26881 cttctatcat ggcgtaaaaa tcaaaaaatt acctgcttta ttgtggtgat aaaattcacg
    26941 ttctacacca gttccagcat cgttacttcc gggcggcagt tcagacgcaa accatacaaa
    27001 ctgcccacgc cacgggttgt gtagatgtgt cgttcgccaa aggcatttaa tccggcgacg
    27061 taacgtttat cttcgacagg ggcaaaaggt tcaccaacca acggtacgcg cagttgcccg
    27121 ccgtgagtat ggccgcacag catcagatcc cagggttcat cacgcatgac ttctttgctg
    27181 tcgggattat gtgccagcat cagtcttggc agatttgctt cgctggcggg aggtggtttg
    27241 cattgtccgg cccataagtc accggtgcct accagttcga attgcctgtt cggcgtggcg
    27301 atcaccgtag cctggttaaa caacaccgtg atgcccactg atttcaacgt ctcgccaatt
    27361 aagtgatttt tttctgtacc aacagggcga tcgtggttgc cgaagcaggc aaacgtcggc
    27421 gcacattcgg caagggggga gaggacatca ctaaacgccg aaaaattcag cggcatatca
    27481 aataatacgt aatcgccgcc cagtaatatc aaatcgggct tttgttctat gccaagagca
    27541 atcgcgtcag aaatcaggct taaaggaaca aaacgagagt aatggagatc ggccagaaaa
    27601 agaattttga atggtgctgc gttgtcttta aaaaaggcga ggcggtgacg gattaattca
    27661 aaccagcctg gctcccagta atgcatataa ccgaaacctg agctcgtggc tatcgtcgcg
    27721 gcagtagcct gcaacaatcg gcggcgtgaa atcatcgctc atccctgcaa aaaaaatcgg
    27781 gcagcgtcgt gctgcccgtg tgcatacttt tagtcgatgg tacgcagcag ttcgttaatg
    27841 ccgactttgc cgcgagtttt cgcgtcaact ttcttaacga taaccgcaca gtagaggctg
    27901 tatttgccat cttttgacgg cagattacct gaaacaacca cagaccccgc cggaacgtga
    27961 ccgtagtgga tttcgccggt ttcacggtcg taaatacggg tgctctgacc aatgtatacg
    28021 cccatggaaa tgacggaacc ttcttcgaca atcacccctt caactacttc agagcgtgcg
    28081 ccaatgaagc agttatcttc aatgatggtt gggttagcct gcagcggttc cagcacgccg
    28141 ccgatgccca cgccaccgga aaggtggacg tttttaccaa tctgcgcaca agaaccgacg
    28201 gtcgcccagg tatcaaccat ggtgccttca tcaacatatg cgccgatgtt gacgtaagac
    28261 ggcatcagca cggtgttacg ggcaataaac gcaccctgac gtaccgccgc tggtggcaca
    28321 acgcggaagc cttctttctg gaaacgtgct tcgtcgtagt cggcgaattt cattggcact
    28381 ttgtcgaagt agcggctttc tgccccttcg atcacctgat tatcattaat acggaaagag
    28441 agcagcaccg cttttttcaa ccactgatgc gtcacccact gaccgtcaat tttttccgct
    28501 acacgcagtg caccggaatc cagcagggcg atcacctgat ttaccgcttc gcgggtaacg
    28561 gtgtctgcgt tggttggcgt gatctcggca cggcgttcaa aagcggtttc aataatgttc
    28621 tgtaactgct gcattgttaa actcttttca tatcagtaaa cacatcaccc tttatcgttt
    28681 ggattgaggg cctctgtcaa ccgctgatgc acttcctgct gcaactcgtt attaagcgca
    28741 cgccggtcag cggtggcaat tatgaataaa tcttctactc gctcgccaat ggttgtaatt
    28801 cgggcaccat gaagcgaaat tcccagatcg gcaaaaattt tcccgactct cgccagcagt
    28861 cctggctggt cgagcgcgat aagctcaagg aacgatttgc ggtcggtatg ggtcggcaaa
    28921 aacgttactt cggtttcaac agtaaaatgg cgtaatttgg cgggttggcg acggggctgc
    28981 ggtggctgcc agctactttg cgtcagtact tgctccagac caaaccgaat aacctcatga
    29041 cgatctgcgg acagcgggct gccatcgggt tccagcacga taaaggtatc catcgccata
    29101 ccgtcgcgag tggtgaaaat ttgtgcgtcg tgaacactta aattgcggcg gtctaattcg
    29161 gcacagacgg cggcaaacag ataggggcgg tccgggctcc agataaaaat ctcggtgcct
    29221 ccacgcgtag cctgcgggct aagcaatacc agtggtttgc ttaaatcatg ctgtaataaa
    29281 tggcgggcat gccaggccag ttgatttggg ctatggcgga caaaatagtt agcacgacag
    29341 cgtgaccaaa tttggtgcag cgcctcttcg tcgatgttat ccatgcgcag tagtgccagt
    29401 gcctggagtt ggtgatggcg aacccgttcg cgcatatccg gcgtgttttg cattccgcgt
    29461 cgtagctgct tttcggtggc aaaatagagt tcgcgcaaca gactttgctt ccagctattc
    29521 cacagcgttt cgttggtggc gcaaatgtca gccactgtca ggcataccag atagcgcaga
    29581 cgattttccg tttgaacttc ttcggcaaac tgcttgatga cttcagggtc ctgaatatcg
    29641 cggcgttgtg ctgtcaccga catcagcaag tgctggcgaa ccagccaggc aaccagctgt
    29701 gtttcgcgtg agttcagccc gtggagttct gcaaaatgca ctacatcctg agcaccgaga
    29761 atggagtggt cgccgccgcg tcctttggcg atatcgtgaa acagcgcggc gatgaaaatc
    29821 agctcagttg acggcaggcg cggccagacg tccacacaca acggatggcg ctggcgcgtt
    29881 tcttcactgg caaaactctc cagtttcagc atcacgcgga tagtatgttc atccaccgtg
    29941 taggcgtgga acagatcaaa ctgcatctgc ccgacgatat gcgaccattg cggcatatac
    30001 gcgccgagca cgctatggcg atgcattggc aatagcccgc gccgcaccgc tccggggtga
    30061 cgcagaatgc tcaaaaacag ttttcgtgct tccggaatat tacacagcgg ttgttgcaga
    30121 tggcgacggg catggcgtaa ctggcgcagc gtggtggagt aaatgccggt gatcgcactg
    30181 ttgcgcacca tggtgtagaa catacgcaag atggcttccg gctggcgcat aaatagtgtt
    30241 tcatcacgca ggtcgattag cgtaccgcgt agctgaaact catcgtcgat tggacgtggt
    30301 ttttcgtcgg caggaagggc gaggatggct tcatcgaaca gttgcagcag catctggttg
    30361 agttcactga cgcggcgtgt aacgcggaag taatccttca tcatccgctc gaccggttcg
    30421 ttgccttcac cactgtaatt cagacgctga gcgacgctaa gttggcgatc gaataacagg
    30481 cgattatcgt aacggctgac gaccagatgc agggcaaagc gaatacgcca cagtatatgc
    30541 agacattcgt ttaattccgc ccgctccgct gaggttaaga agccaaaccc aaccatttca
    30601 tccagcgatg ttgcgccaaa atgacggcgg gccacccatt gcagagtgtg gatatcgcgc
    30661 aagccgccag ggctactttt gatgtctggt tcaagattgt agctggtgcc gtggtaacgc
    30721 tgatggcgct ggttctgttc ttcaactttc gccgcgtaga acttgtcgga aggccagaat
    30781 ccttcgctaa aaatatgttt ttgcagttcg aggaagagcg caacatcgcc aattaataag
    30841 cgggattcga ttaaattggt ggcgacggtt aaatccgata acccttccag catgcactct
    30901 tcaagcgtgc gcacactatg accgacttcc agctttacat cccagagcag cgttaacagc
    30961 tcgcccactt tttgcgcctg atcgtccggg agctttttac ggcttaaaat cagtaaatcg
    31021 atgtcagaaa gtggatgcag ctcgccacga ccgtagccac cgacggcgac caatgccagg
    31081 tcggcaatct ggctgaatcc cgcttcaatc cataatcgtt gcaggagctg gtcgataaac
    31141 tcggtgcgcg cctcaatcaa ctgttctgca gagatcccat tgtcaaaggc atcacccagc
    31201 caacgctgga aagtatcgat atgggctttt atcccaccga cggttaattc atcacggggc
    31261 cagacgcatg gattttgcgg ttgaccgggc agggtgggga gagcggtgtt tgcgtactgt
    31321 tctggaaggg tattcattgt gcgccactca taagattaaa ttatcgcatt aaaaaagccg
    31381 gcattcgccg gcttcatctt attcgtcgtg cgagattatc gccgggatgg tgtcatcctt
    31441 gcgtagcgtc agaatttcgc agccgttatc agtcaccaca atagtatgct catattgtgc
    31501 agacaagctg cgatctttgg tttttaccgt ccagccatct ttcatggtgc ggatctcttt
    31561 tttacccgcg ttgaccattg gctcgatggt gaacgtcatc ccaggtttca gtacgacgtt
    31621 ggtttcacgg gagtcatagt gcagcacctg cggttcttca tggaagccgc gaccaatacc
    31681 gtgtccgcaa tattcacgaa cgacggagaa gccttctgct tcgacaaact tctgaatcgc
    31741 cgcaccgatt tcgcgcaggt taatgcctgg tttgaccatg cgcagcgcca ggtacaggct
    31801 ttcttgcgtg atgcggcaca gacgttcgcc catgatggtc ggcttaccga cgataaacat
    31861 tttcgaggta tcgccgtgga aaccatcttt gattacggtg acatcaatgt taacgatatc
    31921 gccatctttc agcagcttcg catcgtccgg gataccgtgg cacaccactt cattaataga
    31981 gatgcaaacg gatttcggat agccgtgata gccgaggcag gcagaaaccg cgtgttgttc
    32041 attaacaatg taatcattac agatgcgatc cagctcgccg gtgctgacgc ccggtttaac
    32101 atacggttcg atcatctcca gcacttcggc agccagtcgg ccagcgacgc gcattttttc
    32161 gatatcttct ggggtcttga ttgagatagc cattaattct gtccatcagc gtcggtgata
    32221 ccgacaatat atatgtaagt gccgtcaatg gtatcacacc cgggcaaatt gagaatcatt
    32281 ctgaatttcg ccaaacgtgc cactgaacgt tttctataat agaaaattca acgtctgatg
    32341 ctgtacacag cgccaacaat tattggtgtc catgacgtat ttgtggtata aagcgcgccg
    32401 gacttccgat ccatttcgta tacacagact ggacggaagc gacaatctca ctttgtgtaa
    32461 caacacacac gtatcggcac atattccggg gtgccctttg gggtcggtaa tatgggatac
    32521 gtggaggcat aaccccaact tttatataga ggttttaatc atggcaactg tttccatgcg
    32581 cgacatgctc aaggctggtg ttcacttcgg tcaccagacc cgttactgga acccgaaaat
    32641 gaagccgttc atcttcggtg cgcgtaacaa agttcacatc atcaaccttg agaaaactgt
    32701 accgatgttc aacgaagctc tggctgaact gaacaagatt gcttctcgca aaggtaaaat
    32761 ccttttcgtt ggtactaaac gcgctgcaag cgaagcggtg aaagacgctg ctctgagctg
    32821 cgaccagttc ttcgtgaacc atcgctggct gggcggtatg ctgactaact ggaaaaccgt
    32881 tcgtcagtcc atcaaacgtc tgaaagacct ggaaactcag tctcaggacg gtactttcga
    32941 aaagctgacc aagaaagaag cgctgatgcg cactcgtgag ctggagaaac tggaaaacag
    33001 cctgggcggt atcaaagaca tgggcggtct gccggacgct ctgtttgtaa tcgatgctga
    33061 ccacgaacac attgctatca aagaagcaaa caacctgggt attccggtat ttgctatcgt
    33121 tgataccaac tctgatccgg acggtgttga cttcgttatc ccgggtaacg acgacgcaat
    33181 ccgtgctgtg accctgtacc tgggcgctgt agctgcaacc gtacgtgaag gccgttctca
    33241 ggatctggct tcccaggcgg aagaaagctt cgtagaagct gagtaataag gcttgataac
    33301 tcccccaaaa tagttcgagt tgcagaaagg cggcaagctc gagaattccc gggagcttac
    33361 atcagtaagt gaccgggatg agcgagcgaa gataacgcat ctgcggcgcg aaatatgaag
    33421 ggggagagcc cttatagacc aggtagtaca cgtttggtta gggggcctgc atatggcccc
    33481 ctttttcact tttatatctg tgcggtttaa tgccgggcag atcacatctc cgaggatttt
    33541 agaatggctg aaattaccgc atccctggta aaagagctgc gtgagcgtac tggcgcaggc
    33601 atgatggatt gcaaaaaagc actgactgaa gctaacggcg acatcgagct ggcaatcgaa
    33661 aacatgcgta agtccggtgc tattaaagca gcgaaaaaag caggcaacgt tgctgctgac
    33721 ggcgtgatca aaaccaaaat cgacggcaac tacggcatca ttctggaagt taactgccag
    33781 actgacttcg ttgcaaaaga cgctggtttc caggcgttcg cagacaaagt tctggacgca
    33841 gctgttgctg gcaaaatcac tgacgttgaa gttctgaaag cacagttcga agaagaacgt
    33901 gttgcgctgg tagcgaaaat tggtgaaaac atcaacattc gccgcgttgc tgcgctggaa
    33961 ggcgacgttc tgggttctta tcagcacggt gcgcgtatcg gcgttctggt tgctgctaaa
    34021 ggcgctgacg aagagctggt taaacacatc gctatgcacg ttgctgcaag caagccagaa
    34081 ttcatcaaac cagaagacgt atccgctgaa gtggtagaaa aagaatacca ggtacagctg
    34141 gatatagcga tgcagtctgg taagccgaaa gaaatcgcag agaaaatggt tgaaggccgc
    34201 atgaagaaat tcaccggcga agtttctctg accggtcagc cgttcgttat ggaaccaagc
    34261 aaaactgttg gtcagctgct gaaagagcat aacgctgaag tgactggctt catccgcttc
    34321 gaagtgggtg aaggcatcga gaaagttgag actgactttg cagcagaagt tgctgcgatg
    34381 tccaagcagt cttaattatc aaaaaggagc cgcctgaggg cggcttcttt ttgtgcccat
    34441 cttgtaaatt cagctaaccc ttgtggggct gcgctgaaaa gcgacgtaca atgtcgctag
    34501 tattaattca tttcaatcgt tgacagtctc aggaaagaaa catggctacc aatgcaaaac
    34561 ccgtctataa acgcattctg cttaagttga gtggcgaagc tctgcagggc actgaaggct
    34621 tcggtattga tgcaagcata ctggatcgta tggctcagga aatcaaagaa ctggttgaac
    34681 tgggtattca ggttggtgtg gtgattggtg ggggtaacct gttccgtggc gctggtctgg
    34741 cgaaagcggg tatgaaccgc gttgtgggcg accacatggg gatgctggcg accgtaatga
    34801 acggcctggc aatgcgtgat gcactgcacc gcgcctatgt gaacgctcgt ctgatgtccg
    34861 ctattccatt gaatggcgtg tgcgacagct acagctgggc agaagctatc agcctgttgc
    34921 gcaacaaccg tgtggtgatc ctctccgccg gtacaggtaa cccgttcttt accaccgact
    34981 cagcagcttg cctgcgtggt atcgaaattg aagccgatgt ggtgctgaaa gcaaccaaag
    35041 ttgacggcgt gtttaccgct gatccggcga aagatccaac cgcaaccatg tacgagcaac
    35101 tgacttacag cgaagtgctg gaaaaagagc tgaaagtcat ggacctggcg gccttcacgc
    35161 tggctcgtga ccataaatta ccgattcgtg ttttcaatat gaacaaaccg ggtgcgctgc
    35221 gccgtgtggt aatgggtgaa aaagaaggga ctttaatcac ggaataattc ccgtgatgga
    35281 taaataaggg taagattccg cgtaagtatc gcgggggcgt aagtctggtt ataaggcgtt
    35341 attgttgcag gcagtttggt cacggccagc gcgcagcaac cggagcgtac aaaagtacgt
    35401 gaggatggcg agcactgctc ggggccaaaa tggcaaataa aatagcctaa taatccagac
    35461 gattacccgt aatatgttta atcagggcta tacttagcac acttccactg tgtgtgactg
    35521 tctggtctga ctgagacaag ttttcaagga ttcgtaacgt gattagcgat atcagaaaag
    35581 atgctgaagt acgcatggac aaatgcgtag aagcgttcaa aacccaaatc agcaaaatac
    35641 gcacgggtcg tgcttctccc agcctgctgg atggcattgt cgtagaatat tacggcacgc
    35701 cgacgccgct gcgtcagctg gcaagcgtaa cggtagaaga ttcccgtact ctgaaaatca
    35761 acgtgtttga tcgttcaatg tctccggccg ttgaaaaagc gattatggcg tccgatcttg
    35821 gcctgaaccc gaactctgcg ggtagcgaca tccgtgttcc gctgccgccg ctgacggaag
    35881 aacgtcgtaa agatctgacc aaaatcgttc gtggtgaagc agaacaagcg cgtgttgcag
    35941 tacgtaacgt gcgtcgtgac gcgaacgaca aagtgaaagc actgttgaaa gataaagaga
    36001 tcagcgaaga cgacgatcgc cgttctcagg acgatgtaca gaaactgact gatgctgcaa
    36061 tcaagaaaat tgaagcggcg ctggcagaca aagaagcaga actgatgcag ttctgatttc
    36121 ttgaacgaca aaaacgccgc tcagtagatc cttgcggatc ggctggcggc gttttgcttt
    36181 ttattctgtc tcaactctgg atgtttcatg aagcaactca ccattctggg ctcgaccggc
    36241 tcgattggtt gcagcacgct ggacgtggtg cgccataatc ccgaacactt ccgcgtagtt
    36301 gcgctggtgg caggcaaaaa tgtcactcgc atggtagaac agtgcctgga attctctccc
    36361 cgctatgccg taatggacga tgaagcgagt gcgaaacttc ttaaaacgat gctacagcaa
    36421 cagggtagcc gcaccgaagt cttaagtggg caacaagccg cttgcgatat ggcagcgctt
    36481 gaggatgttg atcaggtgat ggcagccatt gttggcgctg ctgggctgtt acctacgctt
    36541 gctgcgatcc gcgcgggtaa aaccattttg ctggccaata aagaatcact ggttacctgc
    36601 ggacgtctgt ttatggacgc cgtaaagcag agcaaagcgc aattgttacc ggtcgatagc
    36661 gaacataacg ccatttttca gagtttaccg caacctatcc agcataatct gggatacgct
    36721 gaccttgagc aaaatggcgt ggtgtccatt ttacttaccg ggtctggtgg ccctttccgt
    36781 gagacgccat tgcgcgattt ggcaacaatg acgccggatc aagcctgccg tcatccgaac
    36841 tggtcgatgg ggcgtaaaat ttctgtcgat tcggctacca tgatgaacaa aggtctggaa
    36901 tacattgaag cgcgttggct atttaacgcc agcgccagcc agatggaagt gctgattcac
    36961 ccgcagtcag tgattcactc aatggtgcgc tatcaggacg gcagtgttct ggcgcagctg
    37021 ggggaaccgg atatgcgtac gccaattgcc cacaccatgg catggccgaa tcgcgtgaac
    37081 tctggcgtga agccgctcga tttttgcaaa ctaagtgcgt tgacatttgc cgcaccggat
    37141 tatgatcgtt atccatgcct gaaactggcg atggaggcgt tcgaacaagg tcaggcagcg
    37201 acgacagcat tgaatgccgc aaacgaaatc accgttgctg cttttcttgc gcaacaaatc
    37261 cgctttacgg atatcgctgc gttgaattta tcggtactgg aaaaaatgga tatgcgcgaa
    37321 ccacaatgtg tggacgatgt gttatctgtt gatgcgaacg cgcgtgaagt cgccagaaaa
    37381 gaggtgatgc gtctcgcaag ctgaggataa tccggctaca gagagtctcg ctatttgtta
    37441 gcgtagggct tcagtgatat agtctgcgcc atctgatcgt aagtagttgg ctttataagg
    37501 tcaggtatgc cgtggttttg catggctttt tttgtatagg cttcagtatt cctgagtacc
    37561 gtaaaccctg tcagggaata aaaaacgcgt gatgttgtct gctactcaac cacttagcga
    37621 aaaattgcca gcgcatggct gccgtcatgt tgcgatcatt atggacggca atggtcgctg
    37681 ggcaaaaaag caagggaaga ttcgtgcctt tgggcataaa gccggggcaa aatccgtccg
    37741 ccgggctgtc tcttttgcgg ccaacaacgg tattgaggcg ttaacgctgt atgcctttag
    37801 tagtgaaaac tggaaccgac cagcgcagga agtcagtgcg ttaatggaac tgtttgtgtg
    37861 ggcgctcgat agcgaagtaa aaagtctgca ccgacataac gtgcgtctgc gtattattgg
    37921 cgataccagt cgctttaact cgcgtttgca agaatgtatt cgtaaatctg aagcgctaac
    37981 agccgggaat accggtctga cgctgaatat tgcggcgaac tacggtggac gttgggatat
    38041 agtccaggga gtcaggcaac tggctgaaaa ggtgcagcaa ggaaacctgc aaccagatca
    38101 gatagatgaa gagatgctaa accagcatgt ctgtatgcat gaactggccc ctgtagattt
    38161 agtaattagg actggggggg agcatcgcat tagtaacttt ttgctttggc aaattgccta
    38221 tgccgaactt tactttatag atgttctctg gcccgatttc gatgaacaag actttgaagg
    38281 ggcgttaaat gcctttgcta atcgagagcg tcgtttcggc ggcaccgagc ccggtgatga
    38341 aacagcctga tggggggcgc ttttgctgaa gtatcgcctg atatctgctt ttgtgttaat
    38401 acccgtcgtc atcgcggcgt tgtttctgtt gccgccggtg gggttcgcca ttgtaacgct
    38461 ggtggtctgc atgctggcag cgtgggaatg gggacagctt agcggtttta ccactcgttc
    38521 gcagcgagta tggttggcgg tgttatgcgg gttattgttg gcgctgatgc tttttctgtt
    38581 gccggaatat caccgaaata ttcatcaacc gctggttgaa atctcacttt gggcttcgct
    38641 gggttggtgg attgtctcgc tattgctggt gctgttttac ccaggttccg cagcaatctg
    38701 gcgtaactct aaaacattgc gccttatttt tggcgtgcta accattgttc ccttcttctg
    38761 gggcatgctg gcgttacggg cctggcacta tgacgagaat cattacagtg gcgcaatatg
    38821 gctgctctat gtcatgatcc tggtatgggg cgctgactcc ggcgcatata tgtttggcaa
    38881 attgtttggt aaacataagc tggcaccgaa ggtttctccg ggtaaaacct ggcaaggctt
    38941 tataggtgga ctcgctactg cagcggtaat ctcatggggt tatggcatgt gggcgaatct
    39001 cgacgtcgct cccgtcacct tactcatttg ctctattgtc gcagcgttag cctcagtgct
    39061 cggcgatctg accgagagta tgtttaagcg tgaagcagga attaaggaca gcggtcattt
    39121 aattccagga cacggtggta ttttagatcg tattgatagc ctgacggctg cggtaccggt
    39181 ctttgcttgc ttgttgttac tggtattcag gacgctttaa cggaaggtaa tatgctgagt
    39241 tttctctggg atttggcttc gttcatcgtt gcactgggtg tacttatcac tgtgcatgaa
    39301 tttggtcatt tctgggttgc ccggcgttgt ggtgttcgcg ttgagcgttt ctcaataggg
    39361 tttggtaagg cgctctggcg gcgaactgat aagctcggca ccgaatatgt tatcgccctg
    39421 atcccgctgg gcggttatgt caaaatgctg gatgagcgcg cagaaccggt cgttccggaa
    39481 ctccgccacc atgccttcaa taataaatct gttggccaac gagcggcgat tattgccgca
    39541 ggtccggttg caaacttcat ttttgctatc tttgcctact ggctggtttt tattattggt
    39601 gtgcctggcg tacgtccggt ggttggtgaa atagcagcca attcgatagc tgcggaagca
    39661 caaattgcac caggtacgga actaaaagcc gtagatggta tcgaaacgcc tgattgggat
    39721 gccgtgcgtt tgcagttggt cgataaaatt ggcgatgaaa gcaccaccat tacagtagcg
    39781 ccatttggca gcgaccaacg gcgggatgta aagctcgatt tacgtcactg ggcgtttgag
    39841 cctgataaag aagatccggt atcttcgctg gggattcgtc ctcgtgggct gcaaattgaa
    39901 cctgtactgg aaaatgtgca gccaaactcg gcggcaagca aggcaggttt gcaagcaggc
    39961 gacaggatcg ttaaagtcga tggtcagccc ttaacgcagt gggtgacctt tgtgatgctt
    40021 gtccgggata acccggggaa atccttagcg ttagaaatcg aaaggcaggg aagtctcttg
    40081 tctttgacat taatcccgga gagtaaaccg ggtaatggta aagcgattgg ttttgtcggt
    40141 attgagccga aagtcattcc tttgccagat gagtataaag ttgtacgcca gtatgggccg
    40201 ttcaacgcca tcgtcgaagc cacggacaaa acgtggcagc tgatgaagct gacggtcagt
    40261 atgctgggaa aattgatcac cggtgatgtg aaactgaaca acctcagtgg gccgatctct
    40321 atcgccaagg gggctgggat gacagcggaa ctcggggtag tttattacct gccgtttctt
    40381 gcgcttatta gcgtgaactt agggataatt aacctgtttc cgttgcccgt acttgacggg
    40441 gcgcatctgc tgttccttgc gatcgaaaag atcaagggcg gaccggtatc cgagcgggtt
    40501 caagactttt gttatcgcat tggctcgatt ctgctggtgc tgttaatggg gcttgcactt
    40561 ttcaatgatt tctctcggtt atgagagtta gttaggaaga acgcataata acgatggcga
    40621 tgaaaaagtt gctcatagcg tcgctgctgt ttagcagcgc caccgtatac ggtgctgaag
    40681 ggttcgtagt gaaagatatt catttcgaag gccttcagcg tgtcgccgtt ggtgcggccc
    40741 tcctcagtat gccggtgcgt acaggcgaca cggttaatga tgaagatatc agtaatacca
    40801 ttcgcgctct gtttgctacc ggcaactttg aggatgttcg cgtccttcgt gatggtgata
    40861 cccttctggt tcaggtaaaa gaacgtccga ccattgccag cattactttc tccggtaaca
    40921 aatcggtgaa agatgacatg ctgaagcaaa acctcgaggc ttctggtgtg cgtgtgggcg
    40981 aatccctcga tcgcaccacc attgccgata tcgagaaagg tctggaagac ttctactaca
    41041 gcgtcggtaa atatagcgcc agcgtaaaag ctgtcgtgac cccgctgccg cgcaaccgtg
    41101 ttgacctaaa actggtgttc caggaaggtg tgtcagctga aatccagcaa attaacattg
    41161 ttggtaacca tgctttcacc accgacgaac tgatctctca tttccaactg cgtgacgaag
    41221 tgccgtggtg gaacgtggta ggcgatcgta aataccagaa acagaaactg gcgggcgacc
    41281 ttgaaaccct gcgcagctac tatctggatc gcggttatgc ccgtttcaac atcgactcta
    41341 cccaggtcag tctgacgcca gataaaaaag gtatttacgt cacggtgaac attaccgaag
    41401 gcgatcagta caagctttct ggcgttgaag tgagcggcaa ccttgccggg cactccgctg
    41461 aaattgagca gctgactaag atcgagccgg gcgagctgta taacggcacc aaagtgacca
    41521 agatggaaga tgacatcaaa aagcttctcg gtcgctatgg ttatgcctat ccgcgcgtac
    41581 agtcgatgcc tgaaattaac gatgccgaca aaaccgttaa attacgcgtg aacgttgatg
    41641 cgggtaaccg tttctacgtg cgtaagatcc gttttgaagg taacgatacc tcgaaagatg
    41701 ccgtcctgcg tcgcgaaatg cgtcagatgg aaggtgcatg gctgggaagc gatctggtcg
    41761 atcagggtaa ggagcgtctg aatcgtctgg gcttctttga aactgtcgat accgataccc
    41821 aacgtgttcc gggtagcccg gaccaagtag atgtagtcta caaggtgaaa gaacgtaaca
    41881 ccggtagctt caacttcggg attggttacg gtactgaaag tggcgtgagc ttccaggctg
    41941 gcgtgcaaca ggataactgg ttaggtacag gttatgctgt tggtatcaac gggaccaaaa
    42001 acgattacca gacctatgct gaattgtcgg taaccaaccc gtacttcact gtagatggtg
    42061 taagcctcgg tggtcgtctc ttctataatg acttccaggc agatgacgcc gacctgtccg
    42121 actataccaa caagagttat ggtacagacg tgacgttggg cttcccgatc aacgaatata
    42181 actcgctgcg tgcaggtctg ggttatgtac ataactccct gtccaacatg cagcctcagg
    42241 ttgcgatgtg gcgttatctg tactctatgg gtgaacatcc gagcacctct gatcaggata
    42301 acagcttcaa aacggacgac ttcacgttca actatggttg gacctataac aagcttgacc
    42361 gtggttactt cccgacagat ggttcacgtg tcaacctgac cggtaaagtg accattcctg
    42421 gatcggataa cgaatactac aaagtgacgt tagacacggc gacttatgtg ccgatcgatg
    42481 acgatcacaa atgggttgtt ctggggcgta cccgctgggg ttatggtgat ggtttaggcg
    42541 gcaaagagat gccgttctac gagaacttct atgccggtgg ttccagcacc gtccgtggct
    42601 tccagtccaa taccattggt ccgaaagcag tttacttccc gcatcaggcc agtaattatg
    42661 atccggacta tgattacgaa tgtgcgactc aggacggcgc gaaagacctg tgtaaatcgg
    42721 atgatgctgt aggcggtaac gccatggcgg ttgccagcct cgagttcatc accccgacgc
    42781 cgtttattag cgataagtat gctaactcgg ttcgtacttc cttcttctgg gatatgggta
    42841 ccgtttggga tacaaactgg gattccagcc aatattctgg atatccggac tatagtgatc
    42901 caagcaatat ccgtatgtct gcgggtatcg cattacaatg gatgtcccca ttggggccgt
    42961 tggtgttctc ctacgcccag ccgttcaaaa agtacgatgg agacaaggca gaacagttcc
    43021 agtttaacat cggtaaaacc tggtaagtgt tctccacaaa ggaatgtagt ggtagtgtag
    43081 cgatgacttt aggcgatcaa tataagatcg ccgggccacg caaagaactg caccctccgg
    43141 tgcaaatggg atggtaagga gtttattgtg aaaaagtggt tattagcggc aggtctcggt
    43201 ttagcactgg caacttctgc tcaggcggct gacaaaattg caatcgtcaa tatgggcagc
    43261 ctgttccagc aggtagcgca gaaaaccggt gtttctaaca cgctggaaaa tgagttcaaa
    43321 ggccgtgcca gcgaactgca gcgtatggaa accgatctgc aggctaaaat gaaaaagctg
    43381 cagtccatga aagcgggcag cgatcgcact aagctggaaa aagacgtgat ggctcagcgc
    43441 cagacttttg ctcagaaagc gcaggctttt gagcaggatc gcgcacgtcg ttccaacgaa
    43501 gaacgcggca aactggttac tcgtatccag actgctgtga aatccgttgc caacagccag
    43561 gatatcgatc tggttgttga tgcaaacgcc gttgcttaca acagcagcga tgtaaaagac
    43621 atcactgccg acgtactgaa acaggttaaa taagtaatgc cttcaattcg actggctgat
    43681 ttagcgcagc agttggatgc agaactacac ggtgatggcg atatcgtcat caccggcgtt
    43741 gcgtccatgc aatctgcaca aacaggtcac attacgttca tggttaaccc aaaataccgt
    43801 gagcatttag gcttgtgcca ggcgtccgcg gttgtcatga cccaggacga tcttcctttc
    43861 gcgaaaagtg ccgcgctggt agtgaagaat ccctacctga cttacgcgcg catggcgcaa
    43921 attttagata ccacgccgca gcccgcgcag aacattgcac ccagtgcggt gatcgacgcg
    43981 acggcgaagc tggggaacaa tgtatcgatt ggcgctaacg cggtgattga atccggcgtt
    44041 gaactgggcg ataacgtgat tatcggtgcc ggttgcttcg taggtaaaaa cagcaaaatc
    44101 ggtgcaggtt cgcgtctctg ggcgaacgta accatttacc atgagatcca gatcggtcag
    44161 aattgcctga tccagtccgg aacagtggta ggcgcagacg gctttggtta tgccaacgat
    44221 cgtggtaact gggttaagat cccacagatt ggtcgcgtaa ttattggcga tcgcgtggag
    44281 atcggtgcct gcactaccat cgatcgcggc gcactggatg acactgttat tggcaatggc
    44341 gtgatcattg ataaccagtg ccagattgca cataacgtcg tgattggcga caatacggcg
    44401 gttgccggtg gcgtcattat ggcgggcagc ctgaaaattg gtcgttactg catgatcggc
    44461 ggagccagcg taatcaacgg gcatatggaa atatgcgaca aagtgacggt tacgggcatg
    44521 ggtatggtga tgcgtcccat cactgaacca ggcgtctatt cctcaggcat tccgctgcaa
    44581 cccaacaaag tctggcgcaa aaccgctgca ctggtgatga acattgatga catgagcaag
    44641 cgtctgaaat cgcttgagcg caaggttaat caacaagact aacgttccat cttttgttcg
    44701 ccaaacttta cggcctgtct cattcttacg attgcggcag gccgtgttat tattgtcgtt
    44761 tcttatattt tgacaggaag agtatcttga ctactaacac tcatactctg cagattgaag
    44821 agattttaga acttctgccg caccgtttcc cgttcttact ggtggatcgc gtgctggatt
    44881 ttgaagaagg tcgttttctg cgcgcagtaa aaaatgtctc tgtcaatgag ccattcttcc
    44941 agggccattt ccctggaaaa ccgattttcc cgggtgtgct gattctggaa gcaatggcac
    45001 aggcaacagg tattctggcg tttaaaagcg taggaaaact ggaaccgggt gagctgtact
    45061 acttcgctgg tattgacgaa gcgcgcttca agcgcccggt cgtgcctggc gatcaaatga
    45121 tcatggaagt cactttcgaa aaaacgcgcc gcggcctgac ccgttttaaa ggggttgctc
    45181 tggtcgatgg taaagtagtt tgcgaagcaa cgatgatgtg tgctcgtagc cgggaggcct
    45241 gatacgtgat tgataaatcc gcctttgtgc atccaaccgc cattgtggaa gagggcgcgt
    45301 caattggcgc gaacgcacac attggtcctt tttgtatcgt tggaccccat gtcggaattg
    45361 gtgagggtac cgtactgaaa tctcacgttg tcgtgaatgg tcatactaaa attggccgcg
    45421 ataatgagat ttatcagttc gcctccatcg gcgaagttaa ccaggatctg aaatatgctg
    45481 gcgaaccgac ccgtgtggaa atcggcgatc gtaaccgcat tcgcgaaagc gtcaccattc
    45541 atcgtggcac agtccagggc ggtggattga cgaaggtggg cagcgacaac ttactgatga
    45601 tcaacgcgca cattgcgcac gattgtacgg taggtaaccg ctgtattctc gccaacaacg
    45661 caacgctggc gggtcacgta tcggttgacg acttcgcgat catcggcggc atgaccgcag
    45721 tccatcagtt ctgcatcatt ggtgcgcacg tgatggttgg cggctgctcc ggtgtggcgc
    45781 aggacgtccc tccttatgtc attgcgcagg gtaaccacgc aacgccgttc ggtgtcaata
    45841 tcgaagggct gaagcgccgc ggattcagcc gtgaggcgat taccgctatc cgcaatgcgt
    45901 ataagctgat ttatcgtagc ggtaaaacgc tcgatgaagt gaaaccggaa attgctgaac
    45961 tggcggaaac atatccggaa gtgaaagcct ttaccgattt cttttcacgc tcaacgcgcg
    46021 gtctgattcg ttaatgactg aacagcgtcc attaacgatt gccctggtcg ccggagaaac
    46081 ctccggcgat atcctagggg ccggtttaat ccgcgctctg aaagaacgtg tgcccaacgc
    46141 ccgctttgtt ggtgttgccg ggccacgaat gcaggctgaa ggctgcgaag cctggtacga
    46201 aatggaagaa ctggcggtga tgggcattgt tgaagtgctc ggtcgtctgc gtcgcttact
    46261 gcatattcgt gccgatctga caaagcgttt tggcgaactg aagccagatg tttttgttgg
    46321 tattgatgcg cctgacttca atattactct tgaaggtaac ctcaaaaagc agggtatcaa
    46381 aaccattcat tacgtcagtc cgtcagtctg ggcgtggcga cagaaacgtg ttttcaaaat
    46441 aggcagagcc accgatctgg tgctcgcatt tctgcctttc gaaaaagcgt tttatgacaa
    46501 atacaacgta ccgtgccgct ttatcggtca taccatggct gatgccatgc cattagatcc
    46561 agataaaaat gccgcccgtg atgtgctggg gatccctcac gatgcccact gcctggcgtt
    46621 gctaccgggg agccgtggtg cagaagttga aatgcttagt gccgatttcc tgaaaacggc
    46681 ccagcttttg cgccagacat atccggatct cgaaatcgtg gtgccactgg tgaatgccaa
    46741 acgccgcgag cagtttgaac gcatcaaagc tgaagtcgcg ccagactttt cagttcattt
    46801 gctggatggg atgggccgtg aggcgatggt cgccagcgat gcggcgctac tggcgtcggg
    46861 tacggcagcc ctggagtgta tgctggcgaa atgcccgatg gtggtgggat atcgcatgaa
    46921 gccttttacc ttctggttgg cgaagcggct ggtgaaaact gattatgtct cgctgccaaa
    46981 tctgctggcg ggcagagagt tagtcaaaga gttattgcag gaagagtgtg agccgcaaaa
    47041 actggctgcg gcgctgttac cgctgttggc gaacgggaaa atcagccacg cgatgcacga
    47101 taccttccgt gaactgcatc agcagatccg ctgcaatgcc gatgagcagg cggcacaagc
    47161 cgttctggag ttagcacaat gatcgaattt gtttatccgc acacgcagct ggttgcgggt
    47221 gtggatgaag tcggacgcgg gccgttagtt ggcgcggtcg tcaccgctgc ggtgatcctt
    47281 gacccggcgc gcccgattgc cgggctgaat gattccaaaa agctgagcga aaaacgccgt
    47341 ctggcgctct gtgaagagat caaagagaaa gcgttgagct ggagtctggg ccgcgcggaa
    47401 ccccacgaaa tcgacgagct gaacattctt catgcgacca tgctggcgat gcagcgtgcc
    47461 gtcgctgggc tgcatattgc gccggaatat gtgttgattg atggtaaccg ctgcccgaaa
    47521 ttaccgatgc ctgcgatggt tgtggtgaaa ggcgatagcc gcgtaccgga aatcagtgcc
    47581 gcgtctatcc tggcgaaagt gacgcgtgac gccgaaatgg cggcgctgga tattgttttc
    47641 ccgcaatatg gttttgccca acacaaaggg tacccaaccg cttttcatct ggaaaaactg
    47701 gctgaacacg gcgcgaccga acaccatcgg cgcagctttg ggcctgtcaa acgcgcactg
    47761 ggacttgcgt cctgattctt gtgtcgagat taagtaaacc ggaatctgaa gatgtctgaa
    47821 ccacgtttcg tacacctgcg ggtgcacagc gactactcga tgatcgatgg cctggccaaa
    47881 actgcaccgt tggtaaaaaa ggcggcggcg ttgggtatgc cagcactggc gatcaccgat
    47941 ttcaccaacc tttgtggtct ggtgaagttc tacggagcgg gacatggcgc agggattaag
    48001 cctatcgtcg gggcagattt taacgtccag tgcgacctgc tgggtgatga gttaacccac
    48061 ctgacggtac tggcggcgaa caataccggc tatcagaatc tgacgttgct gatctcaaaa
    48121 gcgtatcagc gcgggtacgg tgccgctggg ccgatcatcg atcgcgactg gcttatcgaa
    48181 ttaaatgaag ggttgatcct tctttccggc gggcgcatgg gcgacgtcgg acgcagtctt
    48241 ttgcgtggta acagcgcgct ggtagatgag tgtgtcgcgt tttatgaaga acacttcccg
    48301 gatcgctatt ttctcgagct gatccgcacc ggcaggccgg atgaagaaag ctatctgcac
    48361 gcggcggtgg aactggcgga agcgcgcggt ttgcccgtcg tggcgactaa cgatgtgcgc
    48421 tttatcgaca gcagcgactt tgacgcacac gaaatccgcg tcgcgatcca cgacggcttt
    48481 accctcgacg atcctaaacg cccgcgtaac tattcgccgc agcaatatat gcgtagcgaa
    48541 gaggagatgt gtgagctgtt tgccgacatc cccgaagccc ttgccaacac cgttgagatc
    48601 gccaaacgct gtaacgtaac tgtgcgtctt ggtgaatact tcctgccgca gttcccgacc
    48661 ggggacatga gcaccgaaga ttatctggtc aagcgtgcaa aagagggcct ggaagagcgt
    48721 ctggcctttt tattccctga cgaggaagaa cgtgttaagc gccgcccgga atatgacgaa
    48781 cgtctggaga ctgaacttca ggttatcaac cagatgggct tcccgggcta cttcctcatc
    48841 gttatggaat ttatccagtg gtcgaaagat aacggcgtac cggtagggcc aggccgtggc
    48901 tccggtgcgg gttcactggt ggcctacgcg ctgaaaatca ccgacctcga tccgctggaa
    48961 tttgacctgc tgttcgaacg tttccttaac ccggaacgtg tctccatgcc tgacttcgac
    49021 gttgacttct gtatggagaa acgcgatcag gttatcgagc acgtagcgga catgtacggt
    49081 cgtgatgcgg tatcgcagat catcaccttc ggtacaatgg cggcgaaagc ggtgatccgc
    49141 gacgtaggcc gcgtgctggg gcatccgtac ggctttgtcg atcgtatctc gaaactgatc
    49201 ccgcccgatc cggggatgac gctggcgaaa gcgtttgaag ccgagccgca gctgccggaa
    49261 atctacgaag cggatgaaga agttaaggcg ctgatcgaca tggcgcgcaa actggaaggg
    49321 gtcacccgta acgccggtaa gcacgccggt ggggtggtta tcgcgccgac caaaattacc
    49381 gattttgcgc cgctttactg cgatgaagag ggcaaacatc cggtcaccca gtttgataaa
    49441 agcgacgttg aatacgccgg actggtgaag ttcgacttcc ttggtttgcg tacgctcacc
    49501 atcatcaact gggcgctgga gatgatcaac aagcggcggg cgaagaatgg cgagccgccg
    49561 ctggatatcg ccgcgatccc gctggatgac aagaaaagct tcgacatgct gcaacgctcg
    49621 gaaaccacgg cggtattcca gcttgaatcg cgcggcatga aggatctgat caagcgtctg
    49681 caacctgact gcttcgaaga tatgatcgca ctggtggcgc tgttccgccc aggtccgttg
    49741 caatcaggga tggtggataa ctttatcgac cgtaaacatg gtcgcgaaga aatctcctat
    49801 ccggacgtac agtggcagca tgaaagcctg aaaccggtac tggagccaac ctacggcatc
    49861 atcctgtatc aggaacaggt catgcagatt gcgcaggtgc tttctggtta taccctcggt
    49921 ggcgcggata tgctgcgtcg tgcgatgggt aagaaaaagc cggaagagat ggctaagcag
    49981 cgttctgtat ttgctgaagg tgcagaaaag aacggagtca acgccgaact ggcgatgaaa
    50041 atcttcgacc tggtggagaa attcgcgggt tacggattta acaaatcgca ctctgcggcc
    50101 tatgctttgg tgtcatatca aacgttatgg ctgaaagcgc actatccggc ggagtttatg
    50161 gcggcggtaa tgaccgccga tatggacaac accgagaagg tggtgggcct ggtggatgag
    50221 tgctggcgga tggggctgaa aatcctgcca ccagatataa actccggtct ttaccatttc
    50281 cacgtcaacg acgacggcga aatcgtgtat ggtattggcg ccatcaaagg ggtaggtgaa
    50341 ggtccgattg aggccatcat cgaagcccgt aataaaggcg gctacttccg cgaactgttt
    50401 gatctctgcg cccgtaccga caccaaaaag ttaaaccggc gggtgctgga aaaactgatc
    50461 atgtccgggg cgtttgaccg tcttgggcca caccgcgcgg cgctgatgaa ctcgctgggt
    50521 gatgcgttaa aagcggcaga tcaacacgcg aaagcggaag ctatcggtca ggccgatatg
    50581 ttcggcgtgc tggccgaaga gccggaacaa attgaacaat cctacgccag ctgccaaccg
    50641 tggccggagc aggtggtgtt agatggggaa cgtgaaacgt taggtctgta ccttacggga
    50701 caccctatca accagtattt aaaagagatt gagcgttatg tcggaggcgt aaggctgaaa
    50761 gacatgcacc cgacagaacg tggtaaagtc atcacggctg cggggctcgt tgttgccgcg
    50821 cgggttatgg tcaccaagcg cggcaatcgt atcggtatct gcacgctgga tgaccgttcc
    50881 gggcggctgg aagtgatgtt gtttactgac gccctggata aataccagca attgctggaa
    50941 aaagaccgca tacttatcgt cagcggacag gtcagctttg atgacttcag cggtgggctt
    51001 aaaatgaccg ctcgcgaagt gatggatatt gacgaagccc gggaaaaata tgctagcggg
    51061 cttgctatct cgctgacgga caggcaaatt gatgaccagc ttttaaaccg actccgtcag
    51121 tctctggaac cccaccgctc tgggacaatt ccagtacatc tctactatca gagggcggat
    51181 gcacgcgcgc ggttgcgttt tggcgcgacg tggcgtgtct ctccgagcga tcgtttatta
    51241 aacgatctcc gtggcctcat tggttcggag caggtggaac tggagtttga ctaatacagg
    51301 aatactatga gtctgaattt ccttgatttt gaacagccga ttgcagagct ggaagcgaaa
    51361 atcgattctc tgactgcggt tagccgtcag gatgagaaac tggatattaa catcgatgaa
    51421 gaagtgcatc gtctgcgtga aaaaagcgta gaactgacac gtaaaatctt cgccgatctc
    51481 ggtgcatggc agattgcgca actggcacgc catccacagc gtccttatac cctggattac
    51541 gttcgcctgg catttgatga atttgacgaa ctggctggcg accgcgcgta tgcagacgat
    51601 aaagctatcg tcggtggtat cgcccgtctt gacggtcgtc cggtgatgat cattggtcat
    51661 caaaaaggtc gtgaaaccaa agaaaaaatt cgccgtaact ttggtatgcc agcgccagaa
    51721 ggttaccgca aagcactgcg tctgatgcaa atggctgaac gctttaagat gcctatcatc
    51781 acctttatcg acaccccggg ggcttatcct ggcgtgggcg cagaagagcg tggtcagtct
    51841 gaagccattg cacgcaacct gcgtgaaatg tctcgcctcg gcgtaccggt agtttgtacg
    51901 gttatcggtg aaggtggttc tggcggtgcg ctggcgattg gcgtgggcga taaagtgaat
    51961 atgctgcaat acagctccta ttccgttatc tcgccggaag gttgtgcgtc cattctgtgg
    52021 aagagcgccg acaaagcgcc gctggcggct gaagcgatgg gtatcatcgc tccgcgtctg
    52081 aaagagctga aactgatcga ctccatcatc ccggaaccgc tgggcggcgc tcaccgtaac
    52141 ccggaagcga tggcggcatc gttgaaagcg caactgctgg cggatctggc cgatctcgat
    52201 gtgttaagca ctgaagattt aaaaaatcgt cgttatcagc gcctgatgag ctacggttac
    52261 gcgtaattcg caaaagttct gaaaaagggt cacttcggtg gccctttttt atcgccacgg
    52321 tttgagcagg ctatgattaa ggaaggattt tccaggagga acacatgaac atcattgcca
    52381 ttatgggacc gcatggcgtc ttttataaag atgagcccat caaagaactg gagtcggcgc
    52441 tggtggcgca aggctttcag attatctggc cacaaaacag tgttgatttg ctgaaattta
    52501 tcgaacataa ccctcgaatt tgcggcgtga tttttgactg ggatgagtac agtctcgatt
    52561 tatgcagcga tatcaatcaa cttaatgaat atctcccgct ttatgccttc atcaacaccc
    52621 actcgacgat ggatgtcagc gtgcaggata tgcggatggc gctctggttt tttgaatatg
    52681 cgctggggca ggcggaagat atcgccattc gtatgcgtca gtacaccaac gaatatcttg
    52741 ataacattac gccgccgttc acgaaagcct tgtttaccta cgttaaagag cggaagtaca
    52801 ccttttgtac gccggggcat atgggcggca ccgcatatca aaaaagcccg gttggctgcc
    52861 tgttttatga ttttttcggc gggaataccc tcaaggctga tgtctctatt tcggtcaccg
    52921 agcttggttc gttgctcgac cacaccgggc cacacctgga agcggaagag tacatcgcgc
    52981 ggacttttgg cgcggaacag agttatatcg ttaccaacgg aacatcgacg tcgaacaaaa
    53041 ttgtgggtat gtacgccgcg ccatccggca gtacgctgtt gatcgaccgc aattgtcata
    53101 aatcgctggc gcatctgttg atgatgaacg atgtagtgcc agtctggctg aaaccgacgc
    53161 gtaatgcgtt ggggattctt ggtgggatcc cgcaccgtga atttactcgc gacagcatcg
    53221 aagagaaagt cgctgccacc acgcaggcac aatggccggt tcatgcggtg attaccaact
    53281 ccacctatga tggcttgctc tacaacaccg actggatcaa acagacgctg gatgtcccgt
    53341 cgatccactt cgattccgcc tgggtgccgt acacccattt tcatccgatc taccagggga
    53401 aaagtgatct tcgaaacgca atcgacccac aaaatgctgg cggcgttatc gcaggcttcg
    53461 ctgatccaca ttaaaggcga gtatgacgaa gaggcgttta acgaagcctt tatgatgcat
    53521 accaccacct cgcccagtta tcccattgtt gcttcggttg agacggcggc ggcgatgctg
    53581 cgtggtaatc cgggcaaacg gctgattaac cgttcggtgg agcgggcgct gcattttcgc
    53641 aaagaggtcc agcggttgcg ggaagagtct gacggttggt ttttcgatat ctggcaaccg
    53701 ccgcaggtgg atgaagccga atgctggccc gttgcgccag gcgaacagtg gcacggcttt
    53761 aacgatgcgg atgccgatca tatgtttctc gatccggtta aagtcactat tttgataccg
    53821 gggatggacg aacagggcaa tatgagcgag gaggggatcc cggcggcgct ggtggcaaaa
    53881 ttcctcgacg aacgtgggat cgtagtagag aaaaccggcc cttataacct gctgtttctc
    53941 tttagtattg gtatcgataa aaccaaagca atgggattat tgcgtgggtt gacggaattt
    54001 aaacgctctt acgatctcaa cctgcggatc aaaaatatgc tacccgatct ctatgctgaa
    54061 gatcccgatt tctaccgcaa tatgcgtatt caggatctgg cgcaagggat ccataagctg
    54121 attcgtaaac acgatcttcc cggtttgatg ttgtgggcat tcgatacttt gccggaaatt
    54181 atcatgacgc cacatcaggc atggcagaga cagattaaag gtgaagtaga aaccattgcg
    54241 ctggaacaac tggtcggtag agtatcggca aatatgatcc tgccttatcc accgggcgta
    54301 ccgctgttga tgccaggaga aatgctgacc aaagagagcc gcacggtact cgattttcta
    54361 ctgatgcttt gttccgtagg gcaacattac cccggttttg aaacggatat tcacggcgcg
    54421 aaacaggacg aagacggcgt ttaccgcgta cgagtcctaa aaatggcggg ataacttgcc
    54481 agagcggctt acgggcgagt aacgtgctgt taacaaataa aggagacgtt atgctgggtt
    54541 taaaacaggt tcaccatatt gcgattattg cgacggatta tgcggtgagc aaagctttct
    54601 actgcgatat tcttggtttc acgctgcaaa gcgaagtcta tcgcgaagcg cgcgactcgt
    54661 ggaaagggga tttggcgctt aatgggcaat atgtgattga gcttttctct tttccgttcc
    54721 cgccggagcg ccccagccga ccggaagctt gcggcctgcg tcatctggct tttagcgttg
    54781 atgacatcga tgcggcagtg gcgcaccttg aaagccataa cgtgaagtgt gaagccatcc
    54841 gtgtcgatcc atacacgcaa aaacgcttca ccttctttaa cgatccggac gggctgccgt
    54901 tggaactgta tgagcagtaa ggcttgtcat cgccgcattt gcccggtaac gtgccgggca
    54961 ttgctactgt aaaatcgcac catcatgaca ctcacgctca atagacaact tctcacctca
    55021 cgccagattt tggtcgcctt tagcggcggg cttgactcca ccgttctgct gcatcagttg
    55081 gtgcagtggc ggacggaaaa tccgggcgtc actctgcgcg ctattcatgt gcatcacggt
    55141 ttaagtgcca atgccgatgc ctgggttacg cattgcgaaa acgtctgcca acagtggcag
    55201 gtgccgctgg tggtcgaacg cgtacaactt gcgcaagagg ggctggggat tgaggcccag
    55261 gcgcggcagg cgcgttatca ggcatttgcc cgtaccctat tgcccggcga agtgctggtc
    55321 accgcgcaac atctcgacga tcaatgtgaa acctttctgc tggcgctaaa acgcggtagc
    55381 ggccctgccg ggctttcggc tatggcggaa gtttcggagt ttgccggaac acggcttatc
    55441 cgcccgttgc ttgcccgcac gcggggggaa ctggcgcagt gggcattggc gcatggttta
    55501 cgctggattg aagacgaaag taatcaggac gactcatacg atcgtaactt tctgcgcctg
    55561 cgcgtagtgc cgttattgca gcagcgttgg ccgcattttg cggaagcaac ggcccgcagc
    55621 gccgcacttt gtgctgaaca agagagtctg ttggatgaac tgctggcgga tgatttagca
    55681 cactgccaaa cgtcgcaggg gacgctgcag attgcgccaa tgctggcgat gagtgatgcc
    55741 cgccgcgcgg cgattatccg tcgctggctg gcagggcaga atgcaccaat gccttcccgc
    55801 gacgcgctgg tgcggatctg gcaggaagtg gcgctggcgc gggaagatgc ctccccctgt
    55861 ttacgcttgg gcgcgtttga aatccgccgc tatcagtcgc aactgtggtg gattaaatcc
    55921 gtcaccgggc aaagtgaaac cattgtgccg tggcagacgt ggctacaacc gctggaatta
    55981 ccggcggggc tgggaagcgt acagcttact gcgggaggcg atattcgccc tccgcgtgca
    56041 gacgaagcgg tcagcgtgcg tttcaaatcg gcaggattgc tgcatattgt cgggcgcaac
    56101 ggcggacgta agctgaagaa aatctggcaa gagttaggcg tgccgccgtg gctacgtgac
    56161 accacgccac tgctgtttta tggcgaaacg ctgattgcgg cggcaggggt atttgtgacg
    56221 caagaaggtg tggctgaagg tgagaatggc gtaagttttg tctggcagaa aacgcttagt
    56281 taagtgaaag ccggataaga cgcatcaaac gtcgcatccg gcgaaagtca atcaggactc
    56341 gctcaccacc accgtaccga tttccgggtg gctaaagctg gtaattttat ccagacgtag
    56401 ctcacgggtt tcgccagcgg cctcgacgac cagatactcc acatttttgc gggagactaa
    56461 atcgctggct tttgcctgca atttttcgcc atctttcagc tcaagtgtca gcattaaatg
    56521 atgctggcag gcgagctcaa gattatcgta atcatcacaa ttgattggtt gatacgtatc
    56581 attcattaac ataatcgctc accagtaagt ttgccgcagc gtatgctgct ttttccctga
    56641 cagcctcaga aagggcgtcg tcggcagcca tttcattcag cactttcaaa acgcagccca
    56701 gcgcgtccgg aacgtatcct aagtctccgc tggcgatttc cgcgtaccgc ttgcgtatta
    56761 actcacaata tttttccaca tgccctcctg tcagcacact gacttaaccg tggatgcaag
    56821 tctaagccta cgaagataaa ctctgtttcg caaggtgact ataccacact catttctgca
    56881 atatcagcgc cgcaactgca cgtattccgt tacaatggcc tcctgattcg aaaggagttt
    56941 tcttatggcg cttaaagcga caatttataa agcgacggtt aatgtggccg atctcgaccg
    57001 caaccagttt ctcgatgcct ctctgacgct ggcgcgccac ccttcagaaa cccaggagcg
    57061 tatgatgctg cgcctgctgg cgtggctgaa atatgctgat gaacgtctgc aatttacccg
    57121 tggtttgtgt gccgatgatg agccggaagc gtggctgcgt aacgatcacc tgggcattga
    57181 tttgtggatt gagctggggc tgccggatga gcggcggatt aagaaagcct gcacccaggc
    57241 cgcagaagtg gcgctgttta cctataatag tcgggcggcg caaatctggt ggcagcaaaa
    57301 tcagagcaaa tgtgtgcagt ttgccaatct ttccgtctgg tatctggacg atgaacaact
    57361 ggcgaaagta agcgcctttg ccgatcgtac catgacgctg caggcaacga ttcaggatgg
    57421 cgtgatctgg ttatcggacg ataagaataa tctggaagtt aacttaaccg cctggcaaca
    57481 accttcatga ttgtgatttc ccgacatgtt gctattcccg atggtgagct tgagatcacc
    57541 gccattcgtg cgcagggcgc gggcgggcag catgttaata agacctcaac ggccattcat
    57601 ctgcgttttg acattcgggc gtccagcctg ccagagtatt acaaagagcg tctgctcgcc
    57661 gccagccatc atttgatcag cagtgatggc gtgattgtca ttaaggcaca ggaataccgc
    57721 agtcaggaac tgaaccgcga agccgcgcta gcccggctgg tggcagtgat taaagattta
    57781 acaacagaac aaaaagcccg acgacccacg cggcccaccc gtgcatcgaa agagcgcagg
    57841 ctggcatcga aagcacaaaa atcaagcgcg aaggcgatgc gcggcaaagt acgcagcggt
    57901 cgggaataaa aagaaggaat agatggtgaa aaaagcgata gtgacagcga tggctgtaat
    57961 cagcctcttt actctgatgg gatgtaataa ccgggccgaa gtcgatacgc tttctccagc
    58021 acaggctgcc gaactgaaac cgatgccgca aagttggcgc ggcgtgctgc cgtgtgctga
    58081 ttgtgaagga atcgaaacct ctctgttcct cgaaaaagac ggaacatggg tgatgaatga
    58141 gcgttatctc ggtgctcgtg aagaaccttc ctccttcgct tcccacggta catgggcgcg
    58201 aaccgctgac aagctggtat taaccgacag caaaggtgaa aagtcatatt atcgggcgaa
    58261 aggcgatgcg ctggagatgc tcgatcgtga aggcaatccg attgaatcgc agttcaacta
    58321 tacgctggaa ccggcacaat ccagtttacc tatgacgccg atgaccctgc gaggcatgta
    58381 tttttatatg gctgatgcgg cgaccttcac tgattgcgcg accggaaaac gtttcatggt
    58441 agcgaataac gcagagctgg agcgtggcta cctggctgcg cgcggtcaca gtgaaaaacc
    58501 ggtgttactg tcagtagaag gtcactttac gcttgaggct aatccggata ctggtgcgcc
    58561 aaccaaagta ttagcgcccg atacggcggg taaattttac ccgaataagg attgcagtag
    58621 tttggggcag taaacctgct taaggcagaa acaaacgcaa aacaggccag aaggatatat
    58681 ttcaacattt tgaatttgca cgttttttgt aggccggata aggcgtttac gccgcatccg
    58741 gcaatggtgc tcaacgcctg atgcgacgct ggcgcgtctt atcatgccta caacccccct
    58801 cataccttaa ggcggataag gcatttactt tatcaccggg tcaaaccaac aaagcgaccc
    58861 gccttgatat aaatccctgg cttcaggtgc ccaacatact gtaactgcgt ttctggctta
    58921 aacgcagaga catcaccaat acgcatatgc atcagatcgg cagggctaat ccagcccgat
    58981 tgcgccagtg taagtggatg tccggctttg gcaaatgcat cagtgacaaa ttccgaacaa
    59041 aaccacgact ttttgtctcc ttcgcccaca ctgcttaact gcgctttcgc caggccgctg
    59101 acgcactgct ggcgaaaatc ctcggagaac tgattcagtg agcacatctg gcgagtcacc
    59161 ataaagggaa taaattcgac aatgccgcga tagttataac cgctatcttt gattttattg
    59221 gcaaacgcgg tgatatctgt ggcttgttgc ggggtaagat ccgggactcg taagacgaaa
    59281 agcttatcac tatgcttcat cgctttttta agggaaacaa tctggacgcc agcgcctgtc
    59341 gcttctgcaa cgttattatc acccagaaag attgcaacgt gactcacaga ggaagtgctg
    59401 aagacgcgga ttccaaatga ggttacccca aggcttgagg agaacagcaa atcgccgggt
    59461 ttgagatcag gtgccgttat ttcttttatt gattgttcgg tgaaagagct ttgatgctgg
    59521 aatttgacag cccatgtttt tgcctcggca tctactgctg tggctgatgg ggctggctga
    59581 tatcaacggt acaagccgaa agtaaaagaa agctggggag aagcaggcgg cagtacgcct
    59641 ttggtttatc cattttatac aatccatgta aaaaagggcc ctgaaattca ggaccctttc
    59701 tggcatcagc ctttaatctg tttcaccaga tattcgacga tgtcaccagt cttaattaac
    59761 tgtttctcgc cgttgcgacg atatttatat tcgatatcgt cgttgtcgag gttacggtcg
    59821 cccagcacaa tagtgtgcgg aataccgatc agttccatat cagcaaacat cacgcccgga
    59881 cgctctttgc ggtcatccag cagcacttcg ataccttgtg cacgcagttc gctgtacagt
    59941 ttctcagcaa gctcttgtac gcggaaggat ttgtgcatgt tcatcggcag aatcgccacc
    60001 tggaacggcg cgatagcgtc aggccatacg atgccgcgtt cgtcgtagtt ctgctcaatc
    60061 gccgcagcta ccacacgcgt taccccgata ccgtagcaac ccatcgtcag gatttggtta
    60121 cggccatctt caccctgtac ggaggctttc agtgcttcgg agtacttggt acccagctgg
    60181 aagatgtgac caacttcgat accacgtttg atcagcagcg taccctggcc atccgggctt
    60241 ggatcgccag ccaccacgtt acggatatct gcaacttccg gggtagcgac atcgcgatcc
    60301 cagttgatac cgaagtagtg tttaccatcg atgttagcac cagcagcgaa atcactcatc
    60361 gccgcaacgg tacggtcaat caccaccgga atcggcatgt ttaccggacc cagtgaaccc
    60421 ggaccggctt taaccacagc acgaatttct tcttcggtcg cgaaagtcag cgggcttgca
    60481 acctgcggca gtttttctgc tttaacttcg ttcagctcgt gatcaccgcg caccagcagc
    60541 gcaaccagcg ggaagctgct gccttcaacc gctttaacca gcagagtctt aaccgttttc
    60601 tcaatcggca gattgaactg ttcaaccagt tccgcgatgg ttttcgcgtt cggcgtatca
    60661 accagcgtca tttcctgggt agcagcagcg cgcggttctt tcggcgcgat agcttctgcc
    60721 agttcaatgt tcgctgcata gtcagaggtg tcggagaaga ccacatcgtc ttcaccgctc
    60781 tgcgccagca cctggaattc gtgagaggcg ctgccgccga tagaaccggt gtcggcttgc
    60841 acggcgcgga aatccagccc catgcggctg aagattttgc tgtaggccgc atacattgca
    60901 tcgtaggttt cctgcaggga ttcctgagaa gtatggaaag agtaagcatc tttcatcagg
    60961 aattcgcggg aacgcatgac gccgaaacgc ggacgcactt cgtcgcggaa cttggtctgg
    61021 atctgataga agttcagcgg cagctgtttg taagagctaa gctcgttacg aatcaggtca
    61081 gtgataactt cttcatgagt tgggccgagt acgaacggac gctcgccacg gtcaacaaaa
    61141 cgcagcagtt ccggaccgta ctgttcccaa cgaccactct cttgccacaa atcggctggc
    61201 tgaaccaccg gcatcgacac ctcgattgca ccggcgttgt tcatctcttc acgcacgatg
    61261 ttttcgactt ttttcagaac gcgcacgccg gtcggcagcc aggtatataa cccggaggcc
    61321 agcttgcgga tcatcccggc gcgcagcatc agctgatggc tgatcacctc ggcgtcggca
    61381 ggtgtctcct tgagagtgga gagcaggtat tggctagtac gcatgttgtt acggttccag
    61441 ttggaaggta gaacaggctc aaggcgagcc tgggacaaaa aaagtgattt agtttaccag
    61501 tgcaaaagaa atgtcaaaag agaagggcgt gaatttaacg cggttccagc gcaaagactt
    61561 caaaacctgc gtcggtgacg cgccagcgaa cgttaaaatc atgtagccag acggcatagg
    61621 ttttgcccgt ttcctcacct ttatgatagg ccgggcgcgg gtcctgcgcc agtacttcgc
    61681 ggataaacag cgttaactgc ggataacgct tctccagcgt caaaagctgc ttttcgacct
    61741 ctgcggtaaa actcaccgcc atctctgcag ctggcgcact ttgcgcatag ctggcactgg
    61801 catcgggaag cgattcggca aaggggagat acggtttgat atccactacc ggcgtaccat
    61861 cgaccagatc cagactgccg agcttcagaa tcacgctgtc tttatggcaa acaacctctt
    61921 tcagctctac cagcgacata ccaattgggt tagggcggaa agtagagcgt gttgcgaaaa
    61981 cccccattct ggcgttaccg ccgaggcgcg gtggacgcac agtcggacgc cagccgcctt
    62041 ccatcgtttg atgaaagacg aaaaggatcc ataaatggct gaacgcttcc aggccgcgaa
    62101 cggcgtcggc ctggttgtag ggagcaatga gatgcagttc gccgttggcg ctttttacca
    62161 gacctggctg gcgcggaacg gcgaattttt ctttataggg cgagcgaata acgcctattt
    62221 gctcgaactg gaaactgctc atttcgccgt aatgttaagc gcagagccga tacatacagc
    62281 ctgacgatag cagcctggcg taccgctggt gacttcgcag ctatgcagta ataccgcatt
    62341 ggctttcatt ttagaggcgt tgatttgcat ccgcttacgc gcggttggaa tgctcggcgg
    62401 agagtcctga ttagaggcct ggcaagagtc gccactgact tcaccgagat cgcggaacgg
    62461 tttgccgact aattcttctg cattggtata aattcggacc ggcgtggcgc gcggcgcttt
    62521 cggttttgca ggctccgctt tcggctgggg tgcagtgctt tgaacgggtt cgacagggga
    62581 tctgcttaac atggaacagc cgcttagcat gagtgctact aaacagatcg gtaaagcacg
    62641 catagtattt cctcaatgta tgatcaaaac gtcaatattg aatcaggagc ttgtaaaaat
    62701 gacaagacgg gcaagtgccc atcctgaatg atattacaaa ttgtggaaac agcctaaaaa
    62761 ttaccagcct ttaacagcgc cgccgttaaa cactttgttt gctgcttcgt aaacttcatc
    62821 agactgataa gcctggacga atttcttcac gttctcggcg tctttgttat cttcacgcgt
    62881 tacgatcagg tttacgtacg gggagtcttt atcttcgaca aagataccgt ctttcgctgg
    62941 agtcaggcca atctggctgg cataggtggt attgataact gccagagcga tttgtgcgtc
    63001 gtccagagat cgaggcagct gcggtgcttc cagctcaaca attttcagat tttttgggtt
    63061 ctcaacaaca tcaagtacgg tcggcagcag gccaacgcca tctttcagtt tgatcaagcc
    63121 cactttttgc agcagcagca gtgaacgacc aaggttagtt ggatcgtttg gcacggcaac
    63181 ctgcgaacca tcctgcagtt catccagtga tttgattttc ttggagtaac cagcaatcgg
    63241 ataaacaaaa gtgttgccta ctgcgaccag tttgtagcca cgatctttca gttgctgatc
    63301 aaggtacggt ttatgctgga aggcgttggc gtcgatatcg cctttgctca atgcttcgtt
    63361 tggcagaaca tagtcgttga aggttaccag ctcaacgtcc aggccatatt tgtctttcgc
    63421 aactttctgc gcgacttctg caacctgctg ttcggcacca acaatcacgc cgactttaat
    63481 gtggtttgga tctttttcat cctgaccgca gcctaccagt gccagtgatc caatcagggc
    63541 tcccactgcc gcaaaggttt tgaatttgaa cgccatacct tattccttct tcaattattt
    63601 atgttgtgtt gaacgttact tgcgagtgac agcccggacg atgcggtcgc ctgcgaactg
    63661 aattaaataa accagaatga ccagcaatac cagtaccgta ttcatcaccg tcgcgttata
    63721 gccgatgtag ccatactgat agccaatctg acctaaacca ccggcaccga cagcaccacc
    63781 catcgcggaa taaccgacta gggtaatcag ggtgatagtt gccgcattca ccagacccgg
    63841 caatgcttcc ggtaacagca ctttacggac gatctgcatc ggcgtggcac ccattgcacg
    63901 ggaagcttca attaacccgg ttgggatctc cagcagagcg ttctcgacca tacgggcaat
    63961 aaacggtgct gcaccaacgg ttaacggaac aatcgctgcc tgcaaaccaa tcgatgtacc
    64021 aacaataacg cgggtaaacg gaatcatcca taccagcaag ataatgaacg ggatagaacg
    64081 gaaaatgttc acaatcgcag aaacggtacg atacagcttc gcgttagcaa taatttgccc
    64141 cggacgcgtg acataaagca gaacgccaac cggcagacca atcacaaagc caaaaaaacc
    64201 ggatacgaag gtcattgcca gcgtttccca tacgccacga accagcagcc acatcatcgg
    64261 ctcagacata acccagtacc tctactttta catggtgttc ctgcagccag gcaatggcgg
    64321 cttgcgtatc ttgttgtgtg ccgtgcattt cagtcagcat gatgccgaac ttaacgccac
    64381 cggcgtagtc catctgcgcg ctaataatgt tgttgttgac gttgaaacga cgcgcggttt
    64441 cagaaagcag tggggcatcg accgattgac cggtaaactc cagacgcagc atcggcacgc
    64501 agtcagtaaa tggctccgct tgcagacgtt cctggtaatc ttccgggata tccagatgca
    64561 gggtcgactg aataaacttc tgcgccagcg gcgttttagg atgcgagaac acttcactta
    64621 ccgtgtcctg ctcgatcagt tcgccattgc tgatgaccgc cacgcaatca caaatacgct
    64681 tcacaacgtc catttcgtgg gtgatcaaca gaatcgtcaa acccagacgg cggttaatgt
    64741 ctttcagcag ttcgagaata gaacgtgtcg ttgccgggtc cagcgcgctg gtggcttcat
    64801 cacacagcaa tactttggga ttgctggcta atgcacgggc aatcgccaca cgttgtttct
    64861 gcccaccgga aagattcgac gggtagctat catgcttatc gccaagacca accaatgaca
    64921 gcaattccgt cacgcgacgt ttgatctcgt ctttcggtgt gttgtccagc tccagcggca
    64981 gagccacgtt gccaaaaaca gtacgcgaag agagcaggtt aaaatgctgg aaaatcatac
    65041 caatctggcg gcgagctttg gtcaactcgg attctgacag cgtggtcagt tcctggccat
    65101 cgaccagcac gctaccctcg gttgggcgct ccagcaggtt tacacaacgt ataagcgtac
    65161 tcttacccgc gcctgaggca ccgataacgc cataaatttg tccagctggc acatgcaggc
    65221 tgacgttgtt caacgcctgg atgatgcggg tgccctggtg gaacactttg gtgatattcg
    65281 aaagttttat cattgattat ttattatcgt cattaagtta gtcgtggcat ctcgaatgcc
    65341 tgaaacgggc aacgccgtca atgaaatgga tgttaaggca tccagacgtc taaatcaatc
    65401 aggtttatgc gaagagcact ttcttgcagg tcgaaacatg cgatactagc gtcacatgcc
    65461 ttattaagga gctataaaag gtggcaaaga gcgtacccgc aatttttctt gaccgtgatg
    65521 gcaccattaa tgtcgatcac ggctatgtcc atgagatcga caactttgaa tttatcgacg
    65581 gtgttattga cgccatgcgc gagctaaaaa aaatgggctt tgtgctggtg gtagtaacca
    65641 accagtctgg cattgctcgc ggtaaattta ccgaagcaca gtttgaaacg ctgaccgagt
    65701 ggatggactg gtcgctggcg gaccgagatg tcgatctgga tggtatctat tattgcccgc
    65761 atcatccgca gggtagtgtt gaagagtttc gccaggtctg cgactgccgt aaaccacatc
    65821 cggggatgct tttgtcagca cgcgattatt tgcatattga tatggccgct tcttatatgg
    65881 tgggcgataa attagaagat atgcaggcag cggctgcggc gaacgtggga acaaaagtgc
    65941 tggtgcgtac gggtaaacct attacgcctg aagcagaaaa cgcggcggat tgggtgttaa
    66001 atagcctggc agacctgccg caagcgataa aaaagcagca aaaaccggca taatgattaa
    66061 aagatgagcg attgaaataa aaatgcattt ttccacttgt cttcctgaga cgactcccta
    66121 taatgcgcct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    66181 gaagagaaaa atcctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    66241 cctcgcgaca gtgcgctaaa gtgcgtcgca actgctcttt aacaatttat caggcaatct
    66301 gtgtgggcac tcgaagatac ggattcttaa cgtcgcaaga cgaaaaatg
//
LOCUS       DAJVUY010000005        64628 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.005, whole genome shotgun sequence.
ACCESSION   DAJVUY010000005 DAJVUY010000000
VERSION     DAJVUY010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 64628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 64628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..64628
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.005"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..97
                     /locus_tag="OQQ72_000313"
     CDS             <1..97
                     /locus_tag="OQQ72_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2010166.1"
                     /translation="RLNAVLDYIDAVAATDTSTAPDVIWPELPEA"
     gene            complement(69..506)
                     /locus_tag="OQQ72_000314"
     CDS             complement(69..506)
                     /locus_tag="OQQ72_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2010167.1"
                     /translation="MFYSPSLNIFVNPALKDDYINANSWPDDALAVSDDVYNEFAINT
                     PPDDKIRVAGKNGLPTWALIPPPSYEELIQQAESERQLLLNQANEYMNSKQWPGKAAI
                     GRLKGEELAQYNLWLDYLDALELIDTSSAPDIEWPTPPAVQAR"
     gene            complement(508..894)
                     /locus_tag="OQQ72_000315"
     CDS             complement(508..894)
                     /locus_tag="OQQ72_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2010168.1"
                     /translation="MPVSHYLCIFLNVGLGELSLAGTASGVIGLNGYVTIPLIISGSR
                     RTLIIQWGQARFGGSGGEDAGYLNDFPFAFPSACYGMIVSHVGHTPSGAGILSASAIT
                     SNQFRGFSSIATAANAVLGRYIAIGV"
     gene            925..1491
                     /locus_tag="OQQ72_000316"
     CDS             925..1491
                     /locus_tag="OQQ72_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2010169.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKPDRPG
                     LKKLLRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGR
                     FFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTTEQWAQIGRLLEAGES
                     RQRIALIFDVGVSTIYRKFPANESNESP"
     gene            1634..2806
                     /locus_tag="OQQ72_000317"
     CDS             1634..2806
                     /locus_tag="OQQ72_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS2010170.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            2816..3331
                     /locus_tag="OQQ72_000318"
     CDS             2816..3331
                     /locus_tag="OQQ72_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS2010171.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            3386..3688
                     /locus_tag="OQQ72_000319"
     CDS             3386..3688
                     /locus_tag="OQQ72_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS2010172.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            3703..3822
                     /locus_tag="OQQ72_000320"
     CDS             3703..3822
                     /locus_tag="OQQ72_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS2010173.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            3815..6892
                     /locus_tag="OQQ72_000321"
     CDS             3815..6892
                     /locus_tag="OQQ72_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS2010174.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTATVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPAELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            6889..7374
                     /locus_tag="OQQ72_000322"
     CDS             6889..7374
                     /locus_tag="OQQ72_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2010175.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            7371..8471
                     /locus_tag="OQQ72_000323"
     CDS             7371..8471
                     /locus_tag="OQQ72_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS2010176.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGNSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPLDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            8562..8780
                     /locus_tag="OQQ72_000324"
     CDS             8562..8780
                     /locus_tag="OQQ72_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS2010177.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(9016..10701)
                     /locus_tag="OQQ72_000325"
     CDS             complement(9016..10701)
                     /locus_tag="OQQ72_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HCS2010178.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTAHSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            10971..11348
                     /locus_tag="OQQ72_000326"
     CDS             10971..11348
                     /locus_tag="OQQ72_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YbjM"
                     /protein_id="HCS2010179.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="OQQ72_000327"
     CDS             complement(11378..11635)
                     /gene="grxA"
                     /locus_tag="OQQ72_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HCS2010180.1"
                     /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            11795..12082
                     /locus_tag="OQQ72_000328"
     CDS             11795..12082
                     /locus_tag="OQQ72_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HCS2010181.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            12066..12777
                     /gene="nfsA"
                     /locus_tag="OQQ72_000329"
                     /pseudo
     CDS             12066..12777
                     /gene="nfsA"
                     /locus_tag="OQQ72_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
     gene            12838..13740
                     /gene="rimK"
                     /locus_tag="OQQ72_000330"
     CDS             12838..13740
                     /gene="rimK"
                     /locus_tag="OQQ72_000330"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCS2010182.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIVHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            13828..14304
                     /locus_tag="OQQ72_000331"
     CDS             13828..14304
                     /locus_tag="OQQ72_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HCS2010183.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
     gene            14655..15767
                     /gene="potF"
                     /locus_tag="OQQ72_000332"
     CDS             14655..15767
                     /gene="potF"
                     /locus_tag="OQQ72_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HCS2010184.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            15862..16995
                     /gene="potG"
                     /locus_tag="OQQ72_000333"
     CDS             15862..16995
                     /gene="potG"
                     /locus_tag="OQQ72_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HCS2010185.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTQLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            17005..17958
                     /gene="potH"
                     /locus_tag="OQQ72_000334"
     CDS             17005..17958
                     /gene="potH"
                     /locus_tag="OQQ72_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HCS2010186.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            17955..18800
                     /gene="potI"
                     /locus_tag="OQQ72_000335"
     CDS             17955..18800
                     /gene="potI"
                     /locus_tag="OQQ72_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HCS2010187.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILRTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            18860..19348
                     /locus_tag="OQQ72_000336"
     CDS             18860..19348
                     /locus_tag="OQQ72_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HCS2010188.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            19389..20516
                     /gene="rlmC"
                     /locus_tag="OQQ72_000337"
     CDS             19389..20516
                     /gene="rlmC"
                     /locus_tag="OQQ72_000337"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HCS2010189.1"
                     /translation="MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(20691..21422)
                     /gene="artJ"
                     /locus_tag="OQQ72_000338"
     CDS             complement(20691..21422)
                     /gene="artJ"
                     /locus_tag="OQQ72_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein ArtJ"
                     /protein_id="HCS2010190.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(21713..22381)
                     /gene="artM"
                     /locus_tag="OQQ72_000339"
     CDS             complement(21713..22381)
                     /gene="artM"
                     /locus_tag="OQQ72_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HCS2010191.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(22381..23097)
                     /gene="artQ"
                     /locus_tag="OQQ72_000340"
     CDS             complement(22381..23097)
                     /gene="artQ"
                     /locus_tag="OQQ72_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HCS2010192.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(23104..23835)
                     /gene="artJ"
                     /locus_tag="OQQ72_000341"
     CDS             complement(23104..23835)
                     /gene="artJ"
                     /locus_tag="OQQ72_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2010193.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(23853..24581)
                     /gene="artP"
                     /locus_tag="OQQ72_000342"
     CDS             complement(23853..24581)
                     /gene="artP"
                     /locus_tag="OQQ72_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HCS2010194.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(24799..25314)
                     /locus_tag="OQQ72_000343"
     CDS             complement(24799..25314)
                     /locus_tag="OQQ72_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2010195.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            25440..25763
                     /locus_tag="OQQ72_000344"
     CDS             25440..25763
                     /locus_tag="OQQ72_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HCS2010196.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            25760..26590
                     /gene="amiD"
                     /locus_tag="OQQ72_000345"
     CDS             25760..26590
                     /gene="amiD"
                     /locus_tag="OQQ72_000345"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiD"
                     /protein_id="HCS2010197.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(26587..27597)
                     /locus_tag="OQQ72_000346"
     CDS             complement(26587..27597)
                     /locus_tag="OQQ72_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS2010198.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     FRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGKL
                     PR"
     gene            complement(27696..29126)
                     /locus_tag="OQQ72_000347"
     CDS             complement(27696..29126)
                     /locus_tag="OQQ72_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2867 domain-containing protein"
                     /protein_id="HCS2010199.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(29137..30138)
                     /gene="ltaE"
                     /locus_tag="OQQ72_000348"
     CDS             complement(29137..30138)
                     /gene="ltaE"
                     /locus_tag="OQQ72_000348"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HCS2010200.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(30175..31893)
                     /gene="poxB"
                     /locus_tag="OQQ72_000349"
     CDS             complement(30175..31893)
                     /gene="poxB"
                     /locus_tag="OQQ72_000349"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HCS2010201.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(32026..32994)
                     /gene="hcr"
                     /locus_tag="OQQ72_000350"
     CDS             complement(32026..32994)
                     /gene="hcr"
                     /locus_tag="OQQ72_000350"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HCS2010202.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVHTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAKAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(33006..34658)
                     /gene="hcp"
                     /locus_tag="OQQ72_000351"
                     /gene_synonym="priS"
     CDS             complement(33006..34658)
                     /gene="hcp"
                     /locus_tag="OQQ72_000351"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HCS2010203.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(34802..35701)
                     /gene="lysO"
                     /locus_tag="OQQ72_000352"
     CDS             complement(34802..35701)
                     /gene="lysO"
                     /locus_tag="OQQ72_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HCS2010204.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(36195..36890)
                     /gene="aqpZ"
                     /locus_tag="OQQ72_000353"
     CDS             complement(36195..36890)
                     /gene="aqpZ"
                     /locus_tag="OQQ72_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HCS2010205.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
     gene            37316..38974
                     /locus_tag="OQQ72_000354"
     CDS             37316..38974
                     /locus_tag="OQQ72_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCS2010206.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(38971..39927)
                     /locus_tag="OQQ72_000355"
     CDS             complement(38971..39927)
                     /locus_tag="OQQ72_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HCS2010207.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLKLTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            40078..41193
                     /gene="macA"
                     /locus_tag="OQQ72_000356"
     CDS             40078..41193
                     /gene="macA"
                     /locus_tag="OQQ72_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HCS2010208.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAEIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            41190..43136
                     /gene="macB"
                     /locus_tag="OQQ72_000357"
     CDS             41190..43136
                     /gene="macB"
                     /locus_tag="OQQ72_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HCS2010209.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHMVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALVRE"
     gene            complement(43209..43433)
                     /gene="cspD"
                     /locus_tag="OQQ72_000358"
     CDS             complement(43209..43433)
                     /gene="cspD"
                     /locus_tag="OQQ72_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HCS2010210.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            43756..44076
                     /gene="clpS"
                     /locus_tag="OQQ72_000359"
     CDS             43756..44076
                     /gene="clpS"
                     /locus_tag="OQQ72_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HCS2010211.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            44107..46383
                     /gene="clpA"
                     /locus_tag="OQQ72_000360"
     CDS             44107..46383
                     /gene="clpA"
                     /locus_tag="OQQ72_000360"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HCS2010212.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKTLANELLFGSLVDGGQVTVALDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(46727..46814)
                     /locus_tag="OQQ72_000361"
     tRNA            complement(46727..46814)
                     /locus_tag="OQQ72_000361"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46778..46780),aa:Ser,seq:gga)
     gene            complement(47068..47286)
                     /gene="infA"
                     /locus_tag="OQQ72_000362"
     CDS             complement(47068..47286)
                     /gene="infA"
                     /locus_tag="OQQ72_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCS2010213.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(47571..48275)
                     /gene="aat"
                     /locus_tag="OQQ72_000363"
     CDS             complement(47571..48275)
                     /gene="aat"
                     /locus_tag="OQQ72_000363"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HCS2010214.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCKEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(48317..50038)
                     /gene="cydC"
                     /locus_tag="OQQ72_000364"
     CDS             complement(48317..50038)
                     /gene="cydC"
                     /locus_tag="OQQ72_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HCS2010215.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAITRALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(50039..51805)
                     /gene="cydD"
                     /locus_tag="OQQ72_000365"
     CDS             complement(50039..51805)
                     /gene="cydD"
                     /locus_tag="OQQ72_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HCS2010216.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQCGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(51928..52893)
                     /gene="trxB"
                     /locus_tag="OQQ72_000366"
     CDS             complement(51928..52893)
                     /gene="trxB"
                     /locus_tag="OQQ72_000366"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCS2010217.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            53438..53932
                     /gene="lrp"
                     /locus_tag="OQQ72_000367"
     CDS             53438..53932
                     /gene="lrp"
                     /locus_tag="OQQ72_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HCS2010218.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            54067..58095
                     /locus_tag="OQQ72_000368"
     CDS             54067..58095
                     /locus_tag="OQQ72_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS2010219.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPA
                     PEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV
                     VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSAAAVP
                     PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKR
                     IRVPTRRELASYGIKLPSQRAAEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFA
                     QTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDF
                     EFSPMKALLDDGPHEPLFTPIVEPVQQPQQLVAPQQQYQQPQQPVAPQQQYQQPQQPV
                     APQPQYQQPQQQVAPQPQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSL
                     DLLTPPPSEVEPVDTFVLEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV
                     KAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRD
                     NPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV
                     RFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNL
                     AGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKK
                     VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD
                     QAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSD
                     SESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA
                     QGIVSEQGHNGNREVLAPPPFD"
     gene            58250..58861
                     /gene="lolA"
                     /locus_tag="OQQ72_000369"
     CDS             58250..58861
                     /gene="lolA"
                     /locus_tag="OQQ72_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HCS2010220.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            58872..60215
                     /gene="rarA"
                     /locus_tag="OQQ72_000370"
                     /gene_synonym="mgsA"
     CDS             58872..60215
                     /gene="rarA"
                     /locus_tag="OQQ72_000370"
                     /gene_synonym="mgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein
                     RarA"
                     /protein_id="HCS2010221.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            60306..61598
                     /gene="serS"
                     /locus_tag="OQQ72_000371"
     CDS             60306..61598
                     /gene="serS"
                     /locus_tag="OQQ72_000371"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCS2010222.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            61837..64281
                     /gene="dmsA"
                     /locus_tag="OQQ72_000372"
                     /pseudo
     CDS             61837..64281
                     /gene="dmsA"
                     /locus_tag="OQQ72_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            64292..>64628
                     /locus_tag="OQQ72_000373"
     CDS             64292..>64628
                     /locus_tag="OQQ72_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS2010223.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYG"
BASE COUNT        15886 a        16216 c        17415 g        15111 t
ORIGIN      
        1 ccgacttaac gccgtgttgg attacattga cgcggtggcg gcaacagata ccagcaccgc
       61 gccggatgtc atctggcctg aactgccgga ggcgtaggcc attcaatatc tggagcactg
      121 gaggtatcaa tcagttccag tgcgtccaga taatccagcc acaaattata ttgcgccagt
      181 tcctcacctt tcagacgacc aatagcggct ttaccgggcc attgtttact gttcatgtat
      241 tcgttggcct gattaagcaa taattgcctt tctgattctg cctgttgaat aagttcttca
      301 tatgatggtg gaggtattag tgcccatgtg ggtaatccat tttttcctgc aacacgaatt
      361 ttgtcatctg ggggcgtatt gattgcaaat tcattataaa catcatcact gacagccaga
      421 gcatcatctg gccatgaatt tgcattaatg taatcatcct taagcgcagg attcacaaaa
      481 atgtttaaag atggactata aaacatatta aacccctata gcgatataac gacctaatac
      541 agcatttgca gcagtcgcta tgcttgaaaa accgcggaac tgatttgatg taattgcaga
      601 agccgacagg attcctgcgc ctgaaggtgt atgccccaca tgactaacta tcatcccata
      661 acatgctgac ggaaaggcaa aaggaaaatc attaagatat cctgcatctt caccaccaga
      721 cccaccaaat ctcgcctgcc cccactgaat aatcagtgtt ctccgggaac ctgaaataat
      781 taacggaatc gttacatacc cattcaggcc aatgacaccc gatgcagtgc cagccagaga
      841 taattctccc aaaccaacgt ttaagaaaat gcagagataa tggctaactg gcatcatccc
      901 cggtttttat tcaggggatt gatcatgctt attggctatg tacgcgtgtc aacaaatgac
      961 cagaacaccg atttgcaacg taatgcactg aactgcgcgg gatgtgagcg gatttttgag
     1021 gataaaatca gtggcactaa gcccgacaga ccggggctta aaaaactgct caggacacta
     1081 tcggcaggag acacgctggt tgtctggaag ctggacagac tgggacgcag tatgcggcat
     1141 cttgttacgc tgatagaaga gttgcgccag cgtggtgtga atttccgaag cctgactgac
     1201 agtattgata ccagtacccc aatgggccgt ttcttttttc acgtcatggg ggctctggct
     1261 gaaatggaac gtgaactgat agttgaacgt accagagcag ggctggctgc agctcgtgcc
     1321 aaaggcagag taggtggacg ccgtcctaag ttgaccaccg aacagtgggc acagattgga
     1381 cgtttactcg aggccggaga atcaagacag cgtattgcac tgatttttga tgtgggcgtt
     1441 tctaccattt atagaaaatt tccggcgaat gagagcaatg aatcgccctg agtcagtatt
     1501 attttgattt ttcctgtaag cggacaaata ccgtcatttt gtgtgaataa cgacacaact
     1561 gcgcttagct gtttgtcagg cacaatcact tcaacatagg gcgaagccta atccaatcag
     1621 gaggttcgcc actatggctc aggattacca ccacggggtg cgcgttgttg aagtcaacga
     1681 aggcacccga tccattacca cggtgagcac cgccatcgtg ggtatggtct gcacgggcga
     1741 tgatgccgat gcaaaaatgt ttcctcttaa taaacctgtg ctgatcactg atgtgctgac
     1801 cgccagcggt aaagcgggtg agtctggcac gctggcccgt tcgctggatg ccatcgctga
     1861 ccaggcaaaa cccgtgaccg ttgttgtgcg tgtgccgcag ggtgaaacgg aagaagaaac
     1921 cacaaccaat atcattggcg cagtgaccgc cgagggtaaa aaaacaggta tgaaagccct
     1981 gttatctgcc cagtcacagc tcggcgttaa accgcgcatt ctcggcgtgc caggtcacga
     2041 cacgaaggcg gtagctactg agttgctgag cgtggcgcaa agcctgcgtg gatttgctta
     2101 cctgtcagcg tatggttgca agacggtgca ggaagcaatc acttaccgtg aaaacttcag
     2161 tcagcgtgaa ggaatgctga tctggcccga ctttactggc tgggacacgg tgctgaatgc
     2221 cgaagcaacg gcttatgcca ccgcccgtgc gctcggtctg cgcgctaaaa ttgatgagca
     2281 gaccggatgg cacaaaagcc tgtccaacgt gggcgtgaac ggtgtcaccg gaatttctgc
     2341 tgatgtgttc tgggatctgc aggacccggc aaccgatgca ggtctgctta accagaacga
     2401 tatcaccacg cttatccgca aagacggttt ccgcttctgg ggttcccgct gtctgagcga
     2461 tgatccgctc tttgccttcg aaaactacac ccgcacggcg caggtgctga tggacacgat
     2521 ggcagaagcg cacatgtggg cggtggacaa accgctgaac ccgtcgctgg cccgcgacat
     2581 tatcgaaggt atccgcgcca aaatgcgtag cctggtcagt cagggctatc tcattggtgg
     2641 tgattgctgg ctggacgagt cggtgaacga taaagacacg ctgaaagccg ggaaactcac
     2701 catcgattac gactacacgc cagtgccgcc acttgaaaac ctgatgctgc gtcagcgcat
     2761 caccgatcag tacctggtga atttctccag ccaggtcagc gcgtaagggg acaacatggc
     2821 tttaccacgc aaattaaaac acctgaacct gtttaacgac gggaacaact ggcaggggat
     2881 cgttgagtcg ctgacgctgc cgaaattcac ccgcaaatat gagaagtatc gcggcggcgg
     2941 tatgcccgga gcggtggatg tggatctggg actggatgac agtgcactgg atacagaatt
     3001 ttccattggt ggtactgaac tgctgctgtt taagcagatg ggcaaagcca cggtggatgg
     3061 catccagctg cgctttaccg gctctattca gcgtgatgat accggggaag tgcaggccgt
     3121 ggagcttgtg gtgcgtggac gtcacaaaga agtagattcc ggcgagtgga agacgggcga
     3181 aagcaacact accaaagtga ccagtaccaa cagctacgcg aagctgacca tcaatggtga
     3241 ggtgctctat gaagtggacc tgatcaacat ggtggaaatt gtggacggtg tggacctgat
     3301 ggaagcgcac cgcaacgccc tcggcctctg atgtatctga acggcgcgga atgccgcgcc
     3361 agaacctaat ttacaggaca acaaaatgag cgataagcag actgaaaaga ccattcaact
     3421 ggatactccc atcatgcgcg gtaaaacaga aattaccgaa attgtgttgc gtaaaccgca
     3481 gtccggtgcg ctgcgcggca cacgcctgca ggccattatg gatatggatg tgaacgcgat
     3541 gatgaccgtg atcccccgca tctccagtcc ggcactgact gcacaggaaa ttgcagagat
     3601 ggacccggca gatctcactg ccatgtcggt tgaggttgtc acttttttgt tgaagaagtc
     3661 ggtgcttgcc ggtttaccga cagcctgacg gttgacgatc tggtggctga tatcgccacc
     3721 atctttcact ggccgccatc cgttactgac gttatgccgc tgaccgaagt gctggaatgg
     3781 cgggataaag cgattcagag aagcggggcc agccatgagt gacaataacc tgcgtctgca
     3841 ggtgattctt aatgcggttg acaaactcac ccgcccattt cgatccgcgc aggccagttc
     3901 aagagaactg gctgctgctg tcaaaaaatc ccgcgatgca ataaagcagc ttgatcaggc
     3961 cgggagcagt ctggacagct tccgaaagct gcaggcagaa aatcagaaat taggcgacag
     4021 gctgaactat gcccgccagc gtgcaaattt gctcagtcag gaactgggag cgatggggcc
     4081 gccttcgcaa cgtcaggttg ttgctctggg ccgtcaacgg ctggctgttc agcgcctaga
     4141 agaacgccag aaaaagctgc agcagcagac ggcgcttgtg cgtgcagaac tttatcgtgc
     4201 tggtatttca gctaatgatg gcgccagtgc gacggcccgc attacccgtg aaacgatgcg
     4261 ttataacagg cagctttctg agcaggaagc gaggttacga cgtgtcgggg agcaacagcg
     4321 aaaaatgcac gccgcccggg gggcttacgc caggcgtctt gaggtaaggg atcgtattgc
     4381 aggtgccgga gccaccacca cggctgcagg gctggcaatg ggcgcaccag tgatggcggc
     4441 agtaaaaagc tataccagca tggaagatgc catgaaaggt gtggcaaagc aggtcaatgg
     4501 tctgcgtgac gataatggca accgcactgc gcgtttttac gaaatgcagg gtgccatcaa
     4561 ggctgccagc gaacagttgc cgatggaaaa cggtgctgtg gacttcgccg cactggttga
     4621 aggtggtgcg cgcatgaacg tcgcaaaccc tgacgacagc tgggaagacc agaaacgtga
     4681 cctgctggcc ttcgccagca cggcggcaaa ggcggcaaca gcctttgaac tgccagcgga
     4741 tgaactgtca gaaagtctgg ggaaaatcgc ccagctctac aaaatcccta cccgcaatat
     4801 tgagcagctc ggtgatgcgc tgaactatct ggatgataac gccatgtcga aaggggcgga
     4861 catcattgat gtcatgcaac gcctgggcgg tgtggctgac cgtctggatt atcgtaaagc
     4921 ggcggcgctg ggttccacct tcctgacact cggcgctgcg cctgaggttg cagccagtgc
     4981 agcaaacgcg atggtgcgtg aattgtccat tgccaccatg caaagcaaga gtttctttga
     5041 agggatgaat ctgctgaaac tcaatccaga agtgattgaa aagcagatga cgaaggatgc
     5101 gatgggaact atccagcggg tgctggagaa ggtgaatgcg ctgccacagg ataagcgcct
     5161 gtctgccatg accatgttgt ttggtaaaga gtttggcgat gacgcagcga aactggcaaa
     5221 caacctgccg gaacttcagc gccagttaaa actgactgcg ggcaatgatg cgctcggttc
     5281 catgcagaaa gaatccgaca tcaacaagga ttcactttct gctcagtggt tgctggtcaa
     5341 aaccggagca cagaacacct tcagcagcct gggggaaacg ctgcgccagc cgctgatgga
     5401 tattctgtac acggtgaaaa gcgtcacggg ggcgttgcgt cgctgggtgg aagctaaccc
     5461 ggaactgacg ggcactctga tgaaagtagc cgctgtggta gctgccgtta ccgtgggcct
     5521 cggcacctta gcggtggcgc tggctgcagt gctggggccg ctggcagtca tccgtctggg
     5581 attctctgtg ctgggtatca aaacgttacc ttccgttacg gcaacagtaa cccgaaccag
     5641 caacgcgttg tcctggctgg ctggcgcacc actggcactg ctgcgacgcg ggcttgcttc
     5701 atcgggcaac gctgcaggtt tacttactgc gccgttgtcg tctttgcgcc gcacggcatc
     5761 actgacggga aatgtcctga aaactgtagc aggtgcgccg gttgcacttt tgcggtctgg
     5821 attatccggt ttacgtgcgg ttgctgtgat gtttatgaat ccactggcgg tactacgcgg
     5881 cggactggct gccacaggca cggtgctgcg tatgctcgca tccggtccac tggcgatgct
     5941 gcgcgttgcc ctgtatgccg tctctggtct gttaggtgct ctgctcagtc tgataggtct
     6001 tgtggttact gcactggcgg gtgtggcgct ggttgtctgg aaatactggc agcccatcac
     6061 cgcatttctc ggtggcgtgg tggaaggatt caaagcggcg gcaggtcctg tcagtgccgc
     6121 gttcgaaccg cttaagcctg tgttccagtg gattggcgac aaagtacagg cgctgtgggg
     6181 ctggtttact gatctgctga cgcccgttaa gtcgacctct gccgaactgc agagtgcagc
     6241 ggcaatgggg cgacgattcg gggaggctct ggcggaaggg ctgaatatgg tcatgcatcc
     6301 gctggactcc ctgaaatccg gcgtttcctg gttgctggag aaacttggca ttgtcagtaa
     6361 agaggccgca aaggcgaaac tgccggaaag cgtgacgcgt cagcaacctg cgacggtgaa
     6421 tgcagacggt aaagtgatga tgccatcggg tggttttccg tcatggggat atggctttgc
     6481 ggggatgtat gacagcggcg ggtatatccc gcgcgggcag tttggcatcg tcggtgaaaa
     6541 cgggccggaa attgttaacg gcccggcaaa tgtgaccagc cggagaaata cagctgcact
     6601 ggctgccgtt gttgccggaa tgatgggtgt tgctgctacg ccagcagagc ttccaccgtt
     6661 gcaccctttg gcacttcccg cgaaaggcgg tgaagcgatg gtgagtcgtg cagccactgt
     6721 gccgcccgtt caacggattg aggcaccgat gcagatcatc attcaaacgc agccaggaca
     6781 aagtgcgcag gatattgcgc gggaggtggc ccgccagctt gatgaacgtg aacgcaggct
     6841 gaaggcaaaa gccaggagta actacagcga tcagggggga tacgacgcat gatgatggtg
     6901 ctgggattgt acgtgtttat gctgcgcacc gtgccgtatc aggagctgca gtatcaacgc
     6961 agctggcgac atgcggcaaa cagccgggta aaccgacgcc cgtcaacgca gtttctggga
     7021 ccggacaacg acatgctgac gctttctggt gttcttatgc cggaggtaac gggcggcagg
     7081 ctgtcgttgc tggctctgga gcagatggca gaacagggaa aagcatggcc cctgattgaa
     7141 ggcagcggca cgatttacgg catgtatgtg attgagggac tgaatcagac taaaacggag
     7201 tttttccgcg acggtatgcc gcgccggatt gagttcaccc tgtcgctaaa acgcgtggat
     7261 gaatccctgt ccgatatgtt cggtgatctc agtgcgcaac tgaataatct gcagggaacg
     7321 gcaacatctg ccttaagcga tatcagtaaa acggtgggag ggctgctgtc gtgaatttca
     7381 gctctgaact gcttaacaaa ggcaacaaaa ctccggcatt cagcatcagt attgaaggca
     7441 gggatatcac cactgtgctg gacaaccgcc tgatggggct gacgctgacg gataaccggg
     7501 gctttgaagc ggaccagctt gatctggagc tggacgacgc cgatggaaaa atcgtgctgc
     7561 cgcgccgtgg ggctgtcatt acgctggcgc tgggctggaa gggacagccg cttttcccga
     7621 aaggggcatt cacggtggac gagattgaac acactggcgc accggatcgc ctgactatcc
     7681 gggcgcgaag tgctgatttt cgtgaaacgc tgaatacccg ccgtgaaaag tcgtggcaca
     7741 agaccaccgt tggggaagtg gtgaaggaaa tagctgcgcg gcacaaactg aagatggcat
     7801 tgggtgaaga cttgtcggat aaactcgtgg agcatataga ccagactaat gagagtgacg
     7861 gcagtttttt gatgcggctg gcgcgccagt acggtgctat tgcgtcggtg aaaaatggca
     7921 atctgttatt catccggcag gggcagggta aaagcgccag cggtaaacca ctaccggtga
     7981 tcactatcac acgcaaggac ggcaacagtc accgctttac cctggcagat cgcggagctt
     8041 acacgggcgt cattgccagc tggttgcata cccgcgaacc cgcgaagaaa gaaagcacca
     8101 cggtgaagcg taagcgcagg actaagaagc agaagaaaga gccggaagcg aagcagggcg
     8161 attacctggt gggtacggat gaaaacgtgc tggtacttaa tcgcacttat gccaaccgga
     8221 gcaacgccga acgggcagcg aaaatgcagt gggaacgcct gcaacgcggc gttgcatcat
     8281 tctcgctaca actggcggaa gggcgggcag atctctacac agaaatgcct gtgaaggtca
     8341 gtggctttaa acagccgcta gatgatgcgg aatggaccat tacgactctg acgcatactg
     8401 tcagcccgga taacggtttt acgaccagtc tggagcttga agtgaggatt gatgatttcg
     8461 aaatggaatg attcttcgca atggagaact tttaagtttg caaagtggaa taatgcggta
     8521 tcattattgt gaatttagca aaaatgggga gagctcgaaa aatgatgatt tgcccactgt
     8581 gtggaagtgc cgcccatact cgcagcagtt ttcaggtatc ttcattgacc aaagagcgtt
     8641 acaaccagtg ccagaacatt aactgcagcc atacttttgt tacccatgaa acttttgttc
     8701 gttcgattgc aacgccaaaa gagtcaaatc cggttcagcc gcatccaatg aaatcaggac
     8761 aggtggcgct ctctctttga cgctgccgcc attttgtcgc catcgttaaa aaacagtgct
     8821 tctaacatca tgattttaaa aggcataaat ttcagacaac aaaaaaccca tcaaccttga
     8881 accgaaatgg cggggttgat gggctccaca aaatggggac atcaaagaaa agcagtggca
     8941 ctaattaaga ctgatgccct gcggaaaagt tctgcggttg tgcaaaaaaa tttcattttc
     9001 agggcaactt cagttttatc ctaatcctgg ccataccatg acgatgattg tccctgccag
     9061 cgtcagcagg acgttggcga ttgcgtaggt gcccgcatag cccagcgcag ggatgttact
     9121 gtgagctgta tcactgatga tctccattgc cggcgcgcag gtgcgtgcgc ccatcattgc
     9181 gccgaacaac agtgcgcggt tcattcgcaa tacataagca ccgaacaaga aacagataac
     9241 cacgggcaca agactgacaa ttaatccggc aatcaacatc tgaccgccaa tcgcgcccag
     9301 gccgttatta ataccgctac cggcgctcag accaacgcct gccataaaca ccatcaagcc
     9361 gaactctttc accatgctta atgcaccttg cggaatgtaa ccgaaggtcg ggtggttagc
     9421 acgcataaag cccagcataa ttccggcgaa taacaacccg gcagcgttcc ccatgccgaa
     9481 actgaatgtg ctgaactgga aggtgatcat cccgatcatc agcccaataa caaagaaggc
     9541 gcaaaatgcc agcaggtcag tgacctggct gtgaatcgag ataaagccga tgcgatcggc
     9601 gatggttttt acgcgacggg catcaccgct gacttgtaaa acgtcacctt tgttaagcac
     9661 gacgttgtca tctatcggca tctcaatctg gctacgaatg acgcggttaa ggaagcaacc
     9721 gtgatcggtc aacttcagtt gtgcgagacg tttacctaca gcgttatggt ttttaacgac
     9781 cacttcttca gtgacgatac gcatgtcgag aaggtcacga tcgaaaactt ctttaccgtt
     9841 acggaagctg ggatcgagtc gggcatgggc gtcgggatag cctaccaacg ctatttcatc
     9901 gcccatttgt agcacggcat caccgtctgg atttgccaga atcccgttac gtcgaatacg
     9961 ttcaatgtag cagccggttt gtcgataaat acccagttca cgcagatttt tgccgtcggt
    10021 ccaggccacc agctccgggc cgacgcgata ggcgcggatc accggtaaat aaaccttacg
    10081 gttggcatca gtgtccaggc cacgttcgcg ggcgatttgc tgggcgctgg tctgtaagtc
    10141 ctgatgctgc aatttcggca agtaacgcgc accaacaatc aaactcacca gaccgattaa
    10201 ataggttaag gcatacccga ggctcagatt atccagtgcc agtgagagct gcctgctttc
    10261 catgccggaa tgacgcagtg tatcgccagc accgaccaga accggtgtcg acgtcataga
    10321 gcctgctaac ataccggccg tcaggccaat atcccagcca aacagcttac ctaaccctaa
    10381 ggcgatcacc agcgcactgc caaccatcac cagtgctaac attaggtaat ttttcccatc
    10441 gcgaaaaaaa atggaaaaaa agttcggtcc ggcttcgacc ccgacgcaga aaataaacag
    10501 cataaagcca agattaagcg catcggtgtt aatgctgaaa tgttgttggc ctaataacag
    10561 cgatacgact aaaacgccaa tggaattacc cagttggatc gaaccaagtc gtaactttcc
    10621 gagacatagc ccaagcgcga ggaccacaaa taataacaga atgtaattcc catttaacaa
    10681 ttcggcgacg tttatattca cggaggctaa cttcttgttt actagtaagc tgttgaaaga
    10741 aatggtaatt tacgataatg ttttttacca gaattcaggg cgcagattca ttcagcgcac
    10801 ctaaacgata gtaaagtaac aatatatttt actagtgtaa tcacattagg tatcaacggc
    10861 tatatgaatt gcgttggcct atattagcat ggaatgcgaa gcggctttat cttactgaac
    10921 gccacactgg cgaaaaatgt gttcgataga cgcagtgtca ggaggaacga gtgaaacata
    10981 aacaacgttg ggcgggggca atctgctgtt ttgtcctctt cattgtggtg tgcctttttc
    11041 tggcgacgca catgaaaggc gcttttcggg ctgccgggca tcctgaaatc ggcttgctgt
    11101 ttttcattct tcctggagca gttgccagtt tcttttcaca gcgtagagaa gtcctgaaac
    11161 ctctatttgg cgcaatgctg gcggcaccct gttcaatgct cattatgcgg ctgttttttt
    11221 caccgacgcg ctcattctgg caagagctgg catggttact aagcgcggtg ttctggtgtg
    11281 cgctgggggc actgtgtttc ttatttatca gtagtttgtt taaaccacag cacagaaaaa
    11341 atcagtaaag ccctcaacgc gagggcttgt cagacgatca ggcgtccaga ttttctttca
    11401 cccatgcagc aaaatcggta tagccgccga tatgttgctg atcgacaaaa atctgcggca
    11461 cggtttctac gggtttacct gccttttgtt gtagatcttc tttagtgatc ccttccgcac
    11521 gaatatctac atactgatac tgaaaatcat cgcgttcatt gctcaatttc tcagccagat
    11581 cttttgcacg cacacagtaa gggcaacccg aacgaccaaa aataacggtt tgcattattt
    11641 ctctcctcat agatttatgc ctgtaatgat cacgctaaaa tgtattcgct gaaagtaggt
    11701 ttaacctgtt gcattaattg ctaaaagcta taactgttaa acacaataca gtgaaaagtt
    11761 ttagactgaa ggctcacttt gcagagggaa gcgtatgcgc gcgatcggta aattgcctaa
    11821 aggcgtgttg atactggaat ttatcggaat gatgctactg gcggtggcgc tgctgtcggt
    11881 aagcgactcc ctgtcgctgc ctgagccatt ttctcggcca gaagtgcaga ttctgatgat
    11941 ttttctcggt gttttgctca tgcttcccgc tgcggtggtg gttattcttc aggtggcaaa
    12001 acgtcttgcc ccacagctga tgaaccgtcc accgcaatat tcacgttcag aaagagaaaa
    12061 agataatgac gccaaccatt gaacttattt gtggccatcg ctccattcgc catttcactg
    12121 atgaacccat ttccgaagcg cagtgtgagg cgattattaa cagcgcccgt gcgacgtcca
    12181 gttccagttt tttgcagtgt agtagcatta ttcgcattac cgacaaagca ttacgtgaag
    12241 aactggtgac gctgaccggc gggcaaaaac acgtagcgca agcggcggag ttctgggtgt
    12301 tctgtgccga ctttaaccgc catttacaga tctgtccgga tgctcagctc ggcctggcgg
    12361 aacaactgtt gctcggtgtc gttgatacgg caatgatggc gcagaatgca ttaaccgcag
    12421 cggaatcgct gggattgggc ggggtatata tcggcggcct gcgcaataat attgaagcgg
    12481 tgacgaaact gctgaaatta ccgcagcatg ttctgccgct gtttgggctg tgccttggct
    12541 ggcctgcgga taatccggat ctcaagccgc gtttaccggc ctccattttg gtgcatgaaa
    12601 acagctatca accgctggat aaagacgcac tggcgcagta tgacgagcaa ctggcggacc
    12661 cgtggcagca ataatcgccg ggatacctgg agcgatcata tccgccgaac aatcattaaa
    12721 gaaagccgcc catttattct ggattatttg cacaaacagg gttgggcgac gcgctaaaac
    12781 cgccacgtcg atgtatgata cgcgggcttt tgaccaggtc tgacagagag gtgcagggtg
    12841 aaaattgcca tattgtcccg ggatggaacg ctctattcgt gtaagcggct gcgtgaagcc
    12901 gctatacagc gcggtcacct ggttgaaatt cttgatccgc tttcttgcta catgaacata
    12961 aatcctgcgg cgtcttctat tcactacaaa ggccgcaagt taccccattt tgacgcagtg
    13021 atcccgcgta ttggcaccgc cattaccttt tatgggacgg cggcactgcg ccagttcgag
    13081 atgctgggga gctatccgct caatgagtcg gtcgccattg cccgggcgcg tgacaaattg
    13141 cgttccatgc aactgctggc gcgtcagggc atcgacctgc ctgtcacggg cattgtgcat
    13201 tcgccggatg ataccagcga tttaatcgac atggtcggtg gtgcgccgct ggtggtcaag
    13261 ttggttgaag gcacgcaggg aattggcgtc gtgctggcgg agacgcgtca ggcggcggaa
    13321 agcgtgattg acgctttccg cggtctgaac gcgcatattc tggtgcagga atatatcaaa
    13381 gaggcgcaag ggtgcgatat ccgctgtctg gttgttggcg atgaagtggt cgctgcgatt
    13441 gaacggcggg cgaaagaggg cgattttcgt tccaatttgc atcgtggcgg cgcggcaagc
    13501 gtcgccagta tcacaccaca ggagcgtgaa atcgcgataa aagccgcgcg aacgatggcg
    13561 ctggacgttg ctggtgtgga tattctgcgt gctaatcgcg ggccgttggt gatggaagtg
    13621 aatgcgtcgc cggggctgga aggaatagaa aaaaccactg gtatcgacat cgcgggtaaa
    13681 atgatccgct ggatcgaacg ctacgctacg acagaatatt gcctgaaaac gggtggttag
    13741 tcgcaatcac attactgatc atggttttgc ctgcgctttt tgcgtaagct gtgccggtct
    13801 ttttatcgaa agaggttgta caaaattatg acatcgctgg tcgttcctgg tctggatacg
    13861 ctgcgtcaat ggctcgatga cctggggatg agtttttttg aatgtgataa ctgtcaggct
    13921 ctgcatctgc cccatatgca gaatttcgac ggtgtctttg atgccaaaat cgatctgatc
    13981 gataacacga tcctgttttc tgccatggcg gaagtccgac cttcagccgt attgccgctg
    14041 gcggcggatt tatctgccat caatgccagt tcgctgaccg tgaaagcatt tcttgatatg
    14101 caggatgata atctgccaaa gctggtggtt tgccagtctt tatccgttat gcagggcgta
    14161 acctacgagc agtttgcatg gttcgtgcgt cagagcgaag agcagatttc gatggtcatt
    14221 cttgaagcta atgcccatca actgctgtta ccgactgacg atgaagggca aaacaacgtt
    14281 accgaaaact atttcctcca ctgataactc ctttcgagca cgcagtcgct ggtgcagtga
    14341 ctgcgcactg caaaattatc tgctgttttt aaccttttct taaagattat ttcacttctc
    14401 ttgtgccgat ttggctttat cacatagagc aaatacgcat aacaatttgt taaataccgt
    14461 tttttaatcc gagctatagt ctcaaaccct ggctaaagtt attcttgcga tgcttttata
    14521 tagcgagcag tgctggccgg gagagagtta tcttttctta caccgcgccg ataaaaaata
    14581 tgcacgttta ttgcatatct tttagtatga caacttttgt tcgtttgtta acgaactttc
    14641 agaaggaaag agatatgacc gccttaaata aaaaatggct ttcgggtctg gttgcgggtg
    14701 ctctgatggc cgtctctgtc ggcacgctcg cggctgaaca aaaaacactc cacatttata
    14761 actggtctga ttatatcgcc cctgacacgg tggccaattt tgaaaaagaa accggtatta
    14821 aagtcgtcta cgatgttttc gactctaacg aagtactgga aggcaaatta atggcgggta
    14881 gcaccggctt tgacttggtg gttccatctg ccagctttct tgaacgccag ttgactgcgg
    14941 gagttttcca gccgctggac aaaagcaaat tgccggagtg gaagaatctc gacccggagc
    15001 tgctgaagct ggtcgccaaa cacgatcccg acaataaatt tgctatgccc tatatgtggg
    15061 cgacgaccgg gattggctat aacgttgata aagttaaagc tgtgctgggc gaaaacgcgc
    15121 ccgtcgatag ctgggacttg atcctcaaac ctgaaaatct ggaaaaactg aaaagctgcg
    15181 gtgtctcttt cctggatgcg ccagaagaag tttttgctac cgtgttgaat tatctcggca
    15241 aagatcccaa cagcactaaa gcggatgatt acaccggacc ggcaaccgat ctgctgttaa
    15301 agctgcgccc gaacattcgt tatttccatt catctcaata cattaacgac ctggcaaacg
    15361 gcgatatttg cgtcgctatc ggctgggcag gtgatgtctg gcaggcgtca aaccgcgcga
    15421 aggaagcgaa gaatggagtg aatgtctcgt tctcgattcc aaaagaaggg gcgatggcgt
    15481 tctttgatgt attcgccatg cctgcggatg ccaaaaacaa agacgaagcc tatcagttcc
    15541 tgaattacct gctgcgcccg gatgtagtag cgcatatttc cgaccatgtg ttctatgcca
    15601 acgccaataa agcagccacg ccgctggtga gtgcggaagt ccgtgagaac ccgggtattt
    15661 atcctccggc ggacgttcgt gcgaagctat tcactctgaa agtacaggat ccgaaaatcg
    15721 accgtgtgcg cacccgcgcg tggaccaaag tgaagagcgg aaaataatcc gcagccttag
    15781 atgccgggcg ggcgcaccac acccgccggc aattcgcacc atcatggtgc gcttgcacac
    15841 attcaatgcc ggagagcagc cgtgaatgac gctatccctc gcccgcaggc gaaaacccgt
    15901 aaggcgctga cgccgctatt agaaatccgc aacctcacca aatcctacga tggtcagcat
    15961 gcggtcgatg atgtcagcct gaccatctac aaaggtgaaa tcttcgcgct gctgggcgct
    16021 tccggctgtg gcaagtccac gcagctgcgt atgctggcag gttttgaaca accttctgcc
    16081 gggcagataa tgctcgatgg cgtcgatttg tcacaggtgc cgccttacct gcgccccatc
    16141 aatatgatgt ttcagtctta cgcgctgttt ccgcatatga ccgtggaaca gaacatcgct
    16201 tttggcctga aacaggacaa actaccgaaa gcggaaattg ccagtcgggt ccatgagatg
    16261 ctcggcctgg tgcacatgca ggagttcgcc aaacgcaaac cgcatcagct ttccggtggt
    16321 cagcgacagc gtgtggcgct ggcccgaagc cttgccaagc gcccgaaact attactgctc
    16381 gacgagccga tgggcgcgct ggataaaaag ctgcgtgacc ggatgcagct tgaagtggtg
    16441 gatattctgg agcgtgtcgg cgtgacctgt gtgatggtca ctcacgatca ggaagaggcg
    16501 atgacgatgg cgggacgtat cgccattatg aatcgcggga aatttgtcca gattggcgag
    16561 ccagaagaga tctacgaaca tccaaccacc cgctacagtg ctgaatttat cggttcggtt
    16621 aatgtctttg aaggtgtact caaagagcgt catgaggatg ggcttgtgct ttattcgcct
    16681 gggctggtgc atccactgaa agtcgacgcg gatgcctcgg tggtcgataa cgtgccggta
    16741 catgtggcgc tgcgcccgga aaaaatcatg ctttgcgaag agccgcccgc caatggttgt
    16801 aacttcgcgg tgggggaggt gatacacatt gcctatctcg gcgatctttc ggtgtatcac
    16861 gttcgtctga aaagtgggca gatgattagc gcccagctac aaaacgccca tcgtcatcgt
    16921 aaagggttac cgacctgggg cgacgaagtg cgtttgtgct gggaagtgga cagctgtgtg
    16981 gtgctgacgg tttaaggagc aaagatgaat acacttgaac ctgctgccca gtcgaaaccg
    17041 ccgggcggat ttaagctgtg gttgtcgcag ctgcaaatga agcatgggcg caaactggtc
    17101 attgcgttgc catatatctg gttgatcttg ctgtttctgc tgccatttct gattgtcttt
    17161 aaaataagcc tggcggagat ggcgcgcgct attccacctt ataccgaact gatggagtgg
    17221 gctgacgggc aactgtccat cactcttaat ctcggtaatt ttctgcaact gaccgacgat
    17281 ccgctctatt tcgatgctta tctccagtcg ctacaggtgg ctgcgatttc gacattttgc
    17341 tgtttactga tcggctatcc gctggcgtgg gcggtggcgc acagtaagcc ttcgacccgt
    17401 aatattttat tactactggt gatcctgccg tcgtggacct cgtttctgat ccgcgtttat
    17461 gcctggatgg gaatattaaa aaacaacggt gtgctgaata attttctgct gtggctgggg
    17521 gttatcgatc aaccgctgac cattcttcat accaatctgg cagtttatat tggcattgtt
    17581 tacgcctacg tgccgtttat ggtgctgccg atttataccg cgttgattcg tattgattat
    17641 tcgctagtgg aagcagcgct ggatctcggt gcacgaccgc tgaaaacgtt ctttactgtg
    17701 atcgtgccgc tgactaaagg tgggattatt gccggatcga tgctggtgtt tatcccggct
    17761 gtgggcgagt ttgtgatccc ggaactgctc ggtggcccgg acagcatcat gatcgggcgc
    17821 gtgctatggc aagagttttt caataaccgc gactggccgg tggccgcggc ggtagcgatc
    17881 atcatgttgc tgctgctaat tgtgccgata atgtggttcc acaaacacca gcaaaaaagc
    17941 gtgggagaac acggatgaat aatttaccgg tagttcgttc gccctggcgg attgtgattt
    18001 tgctgctggg ctttaccttt ctctacgcgc caatgctgat gctggttatc tattcgttta
    18061 acagctcgaa gctggtgacg gtgtgggccg gctggtcaac gcgctggtat ggtgagttat
    18121 tgcgcgatga cgcgatgatg agtgcggttg gtttaagcct gacaattgct gcctgtgcgg
    18181 caacggcggc ggcgatcctc aggactattg cggcggtggt gctggtgcgc tttggcaggt
    18241 ttcgcggatc aaatggcttt gcctttatga tcacagcgcc gctggtaatg ccagatgtca
    18301 tcacgggctt gtcgctgttg ttattattcg tcgcgcttgc tcatgccatt ggctggcctg
    18361 cggaccgcgg tatgcttacc atctggctgg cgcatgtcac tttctgtacg gcttatgtgg
    18421 cggtcgttat ttcgtcgcgt ctgcgggaac tggatcgctc gatagaagaa gcagcgatgg
    18481 atctcggtgc gacgccgctg aaagtgtttt tcgtcattac gctaccgatg atcatgcctg
    18541 cgatcatttc tggctggtta ctggctttta ctttgtcgct tgatgatctg gtgatcgcca
    18601 gctttgtttc cgggccggga gccaccacgt taccgatgct ggtcttttcc agcgtgcgga
    18661 tgggggtgaa tccggaaatc aacgcccttg caacgttaat tctcggtgcg gtcggaattg
    18721 tcggatttat cgcctggtat ctgatggctc gcgcagaaaa acagcggata cgcgatatcc
    18781 agcgtgcaag acatggctga agacactaaa atttgccaac ctggctacat aatgccgcgc
    18841 atgccgcggc attgttttca tggaagacga aacgttggga ttttttaaga aaacatcttc
    18901 atctcatgct cgcctgaatg tgcctgcgct ggtgcaggta gcggcgctcg ccattattat
    18961 gatccgtggc ctcgacgtgc tgatgatttt caatacgctg ggcgtgcgcg gtattggcga
    19021 gttcattcat cgcagcgtac aaacctggag cttaacgctg gtatttttaa gcagtctggt
    19081 gctggttttt atcgagatct ggtgtgcgtt ttcactggtg aaagggcgtc gctgggcgcg
    19141 ctggctatat ctgctgacac aaatcaccgc cgcaagttac ttgtgggcgg cttcgctggg
    19201 gtatggttat ccggagctgt tcagcattcc cggtgaatca aaacgtgaaa tcttccatag
    19261 cctgatgctg cagaagctgc cggatatgct catcctgatg ctgctgttcg ttccctcgac
    19321 cagtcggcgg ttcttccagt tgcaataatg tgtataatcg tcgcccctga tgatgtgaag
    19381 gtcaatgtat gcagtgcgca ctttacgacg cgggtcgctg tcgttcctgt cagtggataa
    19441 cgcagccgat tccagagcaa ctctccgcta aaaccgccga tcttaaaaat ctgctcgccg
    19501 attttccggt tgaggaatgg tgcgcgccgg tgtcaggccc ggaacaaggg tttcgtaata
    19561 aagccaaaat ggtggtgagt ggtagcgttg aaaaaccact gctcggtatg ctgcatcgcg
    19621 atggcacgcc ggaagacctt tgtgactgcc cgctttatcc tgcctctttt gcgcccgttt
    19681 ttgcggcgct aaaaccgttt atcgcccgtg cggggttaac gccctacaac gtggcgcgta
    19741 agcgtggcga actgaaatac attctgctga ctgaaagcca gagcgatggc ggcatgatgc
    19801 tgcgctttgt actgcgttct gaaaccaaac tggcacaact gcgtaaggcg ctgccgtggt
    19861 tacaggaaca actaccgcaa ctgaaagtta ttaccgtcaa tattcagccg gtacatatgg
    19921 cgattatgga aggggagacg gagatctacc tgactgaaca acaggcgctg gcagagcgtt
    19981 ttaatgacgt accgctgtgg atccgtccgc aaagtttctt ccagactaat ccggcggtcg
    20041 ccagccagct gtacgctacc gcgcgcgact gggtacggca gctgccagtt aaacatatgt
    20101 gggatctgtt ctgcggtgtg gggggctttg gtttacactg cgcgacgcct gacatgcagt
    20161 taaccgggat cgaaattgcg ccagaggcca ttgcctgtgc aaagcagtca gccgctgaac
    20221 tgggcttaac tcgtttacaa tttcaggcgc tggactccac tcagtttgcc actgctcagg
    20281 gggaggtgcc ggagctggtg ctggttaacc cgccgcgccg cggcattggt aaaccgctgt
    20341 gtgattatct ctcaacgatg gcaccgcgtt ttatcatcta ctccagctgt aacgcccaaa
    20401 ctatggcgaa agatatccgc gaactgcctg ggtttcgcat cgaacgggta cagctttttg
    20461 atatgttccc gcacaccgcg cactatgaag tgctgacgct gctggtgaag caataaaaaa
    20521 gccgcaggtg cggcttcaga ttgctgatca ggtgcgcttt gttcatgccg gatgcggcgt
    20581 gtacgcctta tccggcctac aaaatcatgc taaatcaata cattgcagag ttgatgtggg
    20641 ccagataagc gcagcgcatc aggcaatctt acttttgtca tcagtctcaa ttactgcggg
    20701 aaccactggt cattgatttt ctgatatgta ccgtcagctt taattgctgc cagcgcgtta
    20761 ttcagttttt ccagcagagc tttgttatcc ggacgtacag cgatgcccag accggtgccg
    20821 aagtattgcg gatcggtcac tttttcagta gcaacgccca gttgcggatt ggttttcagc
    20881 cattcgttta ccaccgctgt gtcaccaaat accccatcaa tacgaccatt tttcagatcg
    20941 ataaaggcat tctgataact gtcataggag acagttttca cttcggggtg ctgatcctga
    21001 atatatttct ggtgcgtggt gccgttttcc atcccaatac gtttgccttt cagatcggca
    21061 aacgttttgt aggtatcttt tttggcaatc acgacggctg agttttcata gtagggcgtg
    21121 gtaaacgata cctgcttgct acgctcgggc gtgatatcca taccggagat tacggcgtca
    21181 tattttctga atttcagtga cgggatcagg ctgtcgaacg cgtgattagt aaaagtacat
    21241 tctgcctgca tttgtttgca caaggctttt gccagatcga tatcaaagcc gacaatctca
    21301 ttattagcac ctatagattc aaagggtgga taggtggctg aaacgccaaa attgattttc
    21361 tctgcggcag aagcaccgaa agtaaaggaa gcaagtaaag cggcaagaac taactttttc
    21421 atgatggaac tcccgtctgt caatcttatg atttttggcc gtgtctgcgg catgggataa
    21481 caatgccatc aagtgaattt atatgcaata aatatgatta aataatttaa atgaaataaa
    21541 aaacgacgga taacttagtg agttgtccgt cttcattata agaatttatg cactatgtag
    21601 gccggataag gcgtccacgc cgcatccggc acaggcaccg tgctgatgtc tgatgcgacg
    21661 ctggcgcgtc ttatcagacc tacaaacccc ccggcgaatg tacgcagcta cattaattcc
    21721 gccgttcgaa tgccagtgct ttgcgctcga tcagacgcat catcagcgtc agcaggccgt
    21781 tgacgaccag gtaaataatc cctgccgcac cgaacaccat tacatcgtag gtgcgtccgt
    21841 acaacaactg gctgtatccc atcacttcca tcagcgtaat ggtgtaagcc agagaggtac
    21901 ttttgaacac cagcaccact tcgttggaat aagaagagag cgagcgttta aaggcatacg
    21961 gcagcaggat cgccagcgta tcttttttgc tcattcccag ggcgctacag gactgccact
    22021 gaccttctgg gatcgcacga attgcaccgt aaaacagctg cgtggtatac gccgcactgt
    22081 tcagcgataa cgcaatcagc gcacataacc acggttctga caacaaatgc cacagtgccg
    22141 gatactcctg caaagtcgga aactggcccg gcccgtaata aatcaggaag atctgcacca
    22201 gcagcggcgt accggtaaac agcgtgatat aaccccgcac cagccacacc agcaccggcg
    22261 ttttcagcgt caggatgatg gtaaaaatca atgccagaat cagtgccaca atcagcgagg
    22321 caacggttag cgtcaggctg gtgtgtagcc ctttcatcag ttcgggtaaa tactcaaaca
    22381 ttagctgggc ctccgctcaa aacgtgtcgc gcgcaggtca atgcgtttga gaatgtactg
    22441 actgagcagg gtgatcacca ggtaaatcgc cgccgccaca atataccagg taaatggttc
    22501 ctgggtacga gtagcgatgc tttttgtttg cagcattaaa tcattcacac taatcaaact
    22561 gaccagcgcg gtatctttca gcagcaccag ccactggtta ccgaggccag gcagcgcatg
    22621 acgccacatc tgcggcatca ccagacggaa aaagatagcc gatttcgaca gccccagcgc
    22681 ctgaccagac tcccactgac ccaccggcac cgctttcaac gcgccccgaa gcgtttgcga
    22741 ggcataggcg gcatacagca gtgacagagc gatgacacca caaaggaacg ggctaacgtc
    22801 gaagttctca atgtccatct gcactgggat ctgcacgaac ccaagattga tagtgaagcc
    22861 atccgaaagc gtcagcagca gctgcgagga gccaaaatag ataaacagca ccaccagaat
    22921 ttctggcagg ccacgcagaa tggttaccag cgctgaacct gcccacgcga caggacgcca
    22981 tttttccgac tcccataccg caaagaacat cgccagcgcc agcccgacaa tcaatgcaca
    23041 aacggcaagg ccgacggtca tcccggcggc gcttgctaaa ggaaaaaatt cattcatcag
    23101 gaattacttc tggaaccatt tgttgtagat ggtttcgtaa gtgccatctt tcttcacttt
    23161 ttccagcgca gtgttgagtt tctgctgcag ctcagtgttg ccctgacgta ccgcgatgcc
    23221 gaggccagtg ccgaagtaat ctttatcggt cactttgtcg cccaccgccg ccagtttcgg
    23281 gttatctttc agccactcag tgaccactgc ggtgtcaccg aagacgccgt cgatacgccc
    23341 gttttgcaga tccagttttg cgttctggta gctgtcatac ggaacggtag tgatttccgg
    23401 gtgcttatcc ataatgaatt tctggtgtgt cgtcccgttc tgtacgccga cttttttgcc
    23461 tttcagctga tcaacactgg tgtatttgcc ttgctgaccc acaaacaggg cagagttgtc
    23521 atagtacggg gtggtaaaca gcacctgctt ttcacgctcc ggagtgatat ccatgcccgc
    23581 catcacggct tctacgcgac ggaatttcag gcttgggatc aggctgtcaa acgcctggtt
    23641 agagaaagtg caggttgcat caatctcttt acacagcgct tgtgccaggt cgacgtcaaa
    23701 accaacgatc tggttgtttg catcaatcga ttcaaacgga ggataggatg cttcggtagc
    23761 aaaacgaatg gtttcggcag ctgtggcgga aagactaaaa cctgcaatta acgcggcaat
    23821 cagaactttt ttcattgttg ttatcccgaa tcttagtgag agagatagtt tttaaatgct
    23881 tcggtttgcg gctcggtaaa gcagctcgcg tcgccttgtt ctacgatatg accattttcc
    23941 atatacacca ctcggctggc ggttttacgc gccacttcaa cttcgtgggt gacgatcacc
    24001 tgggtaatat tcgtttctgc cagctcacga atgatgctga cgatttgtgc cgtaatttcc
    24061 gggtccagtg cggcggtcgg ttcatcgaac agcagtacct gcggttccat catcaacgca
    24121 cgggcaatag caacacgctg ctgctgacca ccagaaagat gcagcgggta acgatcgcta
    24181 taaggtttga gacgcagacg ttccagcagt ttttctgcac gggccagcgc ctgatcttta
    24241 ctcaacccca gtacacggca gggcgcttca atcaggtttt gctgcacggt cagatgcggc
    24301 cacaggttgt attgctgaaa caccatgcca acgttacgac gcaaatcgcg aatcgctttg
    24361 tcagaggggg ttttggtgaa atcgaaatgg ttgcctgcaa tgttgagcgt accggagcgc
    24421 ggcatctcaa gcagattgag tacacgcagc agcgagcttt tacccgcgcc gctggggcca
    24481 agtaacacca gcgtttcgcc ctgtgggcaa tccagcgtga tatcgaacag cgcctgatgc
    24541 gcgccgtaga agcaattaat gccgtttaat tgaatactca ttgacactcg tatactggca
    24601 gtctgatagc tattgaggtc gaagatagta cctttgacag aataattatg caatatttct
    24661 gctttaaaag ttaaaagcaa agcgcattat tcaataaaca tagcacaaaa taacgggggc
    24721 ggtggtcggc gagcataaat gtcggcattc ctcacgaaat gccggacaat ttacggggtt
    24781 tattggttga tcaaggcgtt agcgattctc gatggactga cggagcgtac ccgccgtggc
    24841 atgaacgctg ccgcctaagt agcgtacatc gtcgatcacc caacactggc cttcctgaat
    24901 cattaacact tcatcctgcc agctctgatc accctgtttt agatccacac gcagaggaat
    24961 atttcgcgca tcacgattcg ggattgttga ggcactggca acacgggcgc tctctggcaa
    25021 ggttgtgcga ctggagaatg gatcgttggt cagtagttcc cgatggttat tatcccggga
    25081 ggcatcgcta agcagtgtcg ccagtttgtc gctcagataa gggcgcaagg cggtgatgtc
    25141 gttgctgcgg tgcaaaatgc ggtagtcata aaattgctgg gccacgttac ccgggcctcc
    25201 ttcaacgcaa ggaccactgc gtgtgccgtt atctttataa gctggagtga ctgtggtgca
    25261 ggcactgagg agcagtgcgc aggggataag cattgtcaat ttgctgtagc gcataatgat
    25321 ttccttataa gcgatcgctc tgaaagcgtt ctacgataat aatgatatcc tttcaataat
    25381 agcgtatcag tctgataatg cttttgagat cgaaggctta gcaaacaagg agatcgatca
    25441 tgcaattttc tacaacccca actctggaag gccagaccat cgttgaatat tgcggtgtgg
    25501 tgaccggcga agcgatttta ggtgccaata ttttccgtga tttctttgcc ggtatccgcg
    25561 atatcgttgg cggacgttcc ggtgcgtatg aaaaagaact gcgtaaagca cgggagatcg
    25621 cctttgagga attaggctcc caggcgcggg cgctgggggc cgatgccgtc gtcggtattg
    25681 atatcgacta cgaaacggtc gggcaaaacg gcagtatgct gatggttagc gtcagcggta
    25741 cggcggtgaa aacgcgtcga tgagaagagt cttctggctg gtcgctgccg ctctgttatt
    25801 ggcagggtgt gcaggcgaaa aaggcattgt cgagaaagag ggatatcagc ttgatacccg
    25861 acgccaggcg caggcggcgt atccgcgcat taaagtgctg gtgatccact acaccgcaga
    25921 tgattttgat agctcgctgg cgacactgac cgataagcag gtcagctcgc attatctggt
    25981 ccctgcggta ccaccgcgat acaacggtaa accgcgcatc tggcaactgg tgccggaaca
    26041 agaactggcc tggcatgcgg ggattagcgc ctggcgcggg gcaacgcgcc ttaacgacac
    26101 ctctattggc attgagctgg aaaaccgtgg ctggcaaaaa tcggccggag tgaaatattt
    26161 tgccccgttt gaaccggcac agattcaggc gcttattcca ctggcgaaag atattattgc
    26221 ccgttatcac atcaagccgg aaaacgtagt ggcacatgcg gatatcgcac cgcagcgcaa
    26281 agacgatccg gggccattat ttccctggca gcaactggcg cagcagggga ttggtgcctg
    26341 gccggatgcg cagcgggtta acttttacct tgccgggcgc gcgccgcaca caccggtaga
    26401 taccgcgtca ttgctggagc ttttggcgcg ctacggttat gacgttaaac ctgatatgac
    26461 accgcgcgag cagcggcgcg tgattatggc attccagatg catttccgcc cgacgttata
    26521 taacggcgaa gcggatgcag aaactcaggc gattgccgaa gcattgctgg agaaatacgg
    26581 gcaggattag cgcggcagtt ttccgtggtc gcgtagccag gcggcagttt tctcgatacc
    26641 ttcatccagg gtgatgaccg gctgataacc taactcttcc tgcgcacgcg taatatccag
    26701 cgtaaagtca aaattcaact tggagacgcc gtagtgggtc agcggcggct cttttgctga
    26761 cttgcggaaa cgctccatgc tgcgggcgat catatccagc atcgggtagg ggacggaacg
    26821 aatacgacag tcaatattca actcgtcgat cagcttctgc acgatgctgc acagtgtgcg
    26881 atgctcgccg ttggtgatgt tgtacacacg cccggaaggt agcttatcgc aggcttcctg
    26941 gcttgccagc cacattgcgt gcacggcatt ttcatagtag gtcatatcga ccagcgcact
    27001 gccgccatgc ggtaacagaa tactgccgta gtggtgcatc atatgcgcca gacggggaat
    27061 aaagacttta tcgtgcggtc cgaacagact ttgtgggcgc agaatagtaa agcgcgtttg
    27121 tggattcgcc tgcgaaaaca tattgatcac ttcttcgctg gctgctttgc tgcgggcaaa
    27181 ctcgttggcg aagcggtgag ggcgaaaatc ttctttaata tcgcgatggt ggtgataatc
    27241 gaagtacagg gagggggaag agatatgaat aaagttacgc acaccccagg cgacagccca
    27301 ttcacccagg cggcgagtgg cgcgaacgtt agccagatcg aaagcctgtt gtgtccccca
    27361 gggtgaggta aagctggagc agtgccacag cgtatcaatg cccgcgagca tcactttagc
    27421 ttgtgatgaa accagctcgg tcagatccgc cggaacaaac tctgcgccca ttttttccag
    27481 caatttgccc attgcctcgt tgcgaccggt cgctcgcacg ctgatgcctt tctggcataa
    27541 aaactctacc gcgtttcgac ctaagccgct ggtggcgccg gtaaccagta ccttcatatc
    27601 aatccactgt tgttgagaaa ataacgtgcg cattcttccg tgatttcccc catgatgcaa
    27661 tgggaaacat gaaagaataa cgcaggtttt gtcgattaat ctgtgctttg ttctgccagt
    27721 ctggcgattt gttttgccat tccgcgaaaa ataaacagat gcgcggggat catcaataac
    27781 cagtaaaaca gccccggcat accgtgcgga tgccagaaag cgcggacatc gatagtacga
    27841 tagtcgcctt tatcttccag gctaaaacac agtcgtccca gccccggcgc tttcatgcca
    27901 aataacaacg taagttgttt ttccggttca acgacaatca ctttccagct atctaccgca
    27961 tcgccagtct gtaaatattc gcgctccggg cggcctttcg ccagcttatg accgatcgcg
    28021 cggtccatca acgcccgtgt ctgccacaaa atattgccaa agaaataacg ctctttaccg
    28081 ccgatttggt tcactacctg ccataaagca gcaaggctgg cggacgtttt aacggtaaac
    28141 cccgcctgtt tggcaaaata accgtactcc ggtcgccagc gggcaaaggc ctgagcgtcg
    28201 tagccccagt cgctggagtt gaccagtttt tcctcctctt tcaacgtgct acgtactgcg
    28261 tcatcgaaag cgatcagccg ttgtgggatg agtgcacgta gcgcggtatc atccgccagc
    28321 agatcgtgtt tcagcccctg aatcaacgcc ctggcggtgg tgggcggtac ggaagtaatc
    28381 acattgagaa accacaccga aatccagcgg gtggggaggg ggatggggat caaccagcgg
    28441 cgcttgccgc tcaccgccat aaaatgttca aactgttgct gataactgag cacctctggt
    28501 ccggcggctt cgaagatgcg gtgttcgctg gccggatgat ctaacaacgc caccagatag
    28561 tgcagcaagt tttccagcgc gatgggcgtg gtgcgtgaac gtacccagcg tggcggcgtt
    28621 aacactggca ggttgtagac catatcgcgc atgacttcga acgccgctga acctgcgcca
    28681 acgataattc cggctcgaag ttcggtcaca ggtacattcg cttcacgaag aatgtccgcc
    28741 gtagcctgac gagcacgcag atgatccgac tgctcatgtg gcggggcctg caacgaactg
    28801 agaaagatta attgcttaac tggtacttca cgtagcgcat cgcggacgtt gagagccacc
    28861 tggcgctcct gagcgataaa atcgccgcct tcgcccatgc tgtgcaccag aaaatagacg
    28921 gtatcgatat cctgcaacag ggccggaagg ttatccggcc agctgagatc gactttatgg
    28981 caactgacgt ttgccagttg cagctttgca agcctgtcga catgacgtgc cgccgccagg
    29041 atctgatgcc cttgctggct gagtgtgcgc accagatgct gaccaatgta gccactggca
    29101 ccgagaacta aaatgcgttg cggcacgtct ctctccttaa cgcgccagga atgcgcgcca
    29161 gtgggcggcg acttccgcca gttgttcgcg cgagacgtca agatgcgtca ccaggcggac
    29221 aatcggcgag gcgttaatca gcacgtttct cactttcatg tattcgccta acgcggcagc
    29281 attttcttcc ccgacgcgaa caaacagcat attagtgtcc tgacgcatca catccgcgcc
    29341 tgcttcacgc agttgctccg ccatccaggc ggcgttgtcg tgatcttcct gcaaccgtgc
    29401 gacgttattt ttcagggcat acatcccggc ggcagccaga atcccggact gacgcatccc
    29461 gccaccggcc attttccgcc agcggatggc acgtttaatg taatcacgat taccgacgag
    29521 taatgaaccg acaggcgtcc caagaccttt cgacaggcaa atggtgaacg aatcacaata
    29581 ttgcgtgatc tctttcagtt cgcagccgta agccaccacg gcattaaaga tgcgcgcacc
    29641 gtcaacatgc agcgccagat tgcgctcgcg ggtaaattcc catgcttctt tcaggtattc
    29701 acgcggcagc actttgccgt tgtgggtgtt ttccagactg agtaatttgg tgcgggcgaa
    29761 atggatatcg tcgggtttga ttttcatcgc cactttatcc agcggtagcg tgccgtcggc
    29821 tgccgcgtcg atgggttgcg gctgaatact gcccagcacc gctgcgccac cggcttcaaa
    29881 cagatagtta tgcgcggcct gaccgacaat atactcttcg ccacgttcgc agtgactgag
    29941 cagagcgacc aggttggcct gagtgccggt aggcagaaaa atggcggctt ctttaccgga
    30001 aagctctgct gcatagtcct gcagagcatt aacggtaggg tcgtctccgt aaacgtcgtc
    30061 cccaaccggg gcggccatca tcgcttcgag catggcgcgg ctcggtcggg taacggtatc
    30121 actgcgtaaa tcaatcatgg catgtcctta ttatgacggg aaatgccacc ctttttacct
    30181 tagccagttc gttttcgcca gttcgatcac ttcatcgccg cgtccgctga tgattgcgcg
    30241 caacatatac aagctaaatc ctttggcctg ttcgagtttg atctgcggtg gaatggctaa
    30301 ctcttctttg gcgaccacca catccaccag caccggaccg tcgatggaga aggcgcgttg
    30361 cagggcttca tcaacttcag acgctttttc tacacggata cccgtaatgc cgcacgcttc
    30421 ggcaatgcgg gcaaagtttg tgtcgtgtag ttcggtgccg tcagtcaaat agccaccagc
    30481 tttcatctcc atcgccacaa agcccagcac gctgttgtta aagacgacaa ttttcactgg
    30541 cagtttcatc tgcactactg agaggaaatc gcccatcaac atgctaaaac cgccatcgcc
    30601 gcacatggcg accacctgac gttctggctc tgtcgcctgc gcacccagcg cctgcggcat
    30661 ggcgttagcc atcgaaccgt ggttaaacga acctaacagg cgacgcttgc cgttcatttt
    30721 tagataacgt gccgcccaca ccgttggcgt accaacgtca caggtgaaaa tagcgtcatc
    30781 ggcggcaaaa tgactaattt gctgcgccag atattgcggg tgaatggctt tctcgctcgg
    30841 tttagctaaa tcgtccagcc ctttgcgggc gtcgcggtaa tcttccagcg ctttatccag
    30901 aaacttgcga tcggcttttt cttccaccaa tggaagcaat gcacgcagag tcgacttgat
    30961 atcgccgacc agtgccatat ccaccttgct gtgagcgccg atgctggctg ggttgatatc
    31021 aatctgaatg attttggcat cggtcgggta gaaggcgcgg tagggaaatt gcgtgccgag
    31081 tagcactaac gtgtcggcgt tcatcatggt atggaaacct gacgagaagc cgattaaccc
    31141 ggtcattcca acatcatacg gattatcgta ttcgacatgt tctttaccgc gcagggcatg
    31201 aacaataggc gctttaattt tcccggcaaa ctcaactaac tctttatgcg cccccgcgca
    31261 gccgctgcca cacatcaggg cgatattgct ggaataacgc agcagttgcg ccagtttgcg
    31321 taactcttct tcttccggcg tcacgactgg ttgtggcgca tgataccagt gcgtggttgc
    31381 cccttctggc gcaggtttta acgccacgtc gcctggtaac acgacaaccg aaacgccacg
    31441 gttaagcacc gctttgcgca tggcaatcgc cagtacttgt gggatctgct ccgggctgga
    31501 aaccagctcg caatagtgac tacattcgcg gaatagctct tgtgggtggg tttcctggaa
    31561 atagccgctg ccaatttcgc tggagggaat atgagcggca atcgccagta ccggaacgtg
    31621 attgcggtgg caatcaaaca ggccgttgat taagtgcagg ttgccggggc cgcacgatcc
    31681 ggcgcagacc gccagttctc cgctaagttg tgcttcagcg ccagcggcaa aggccgccac
    31741 ttcttcgtgg cgggtggaca tccactcgat ggtgcccatg cgattaagac tgtcactaag
    31801 accattcaga gagtcgcctg tgactcccca gatgcgtttc acccctgccg attcgagtgt
    31861 tttggcgata taagctgcaa ccgtttgttt catggttctc catctcctga atgtgataac
    31921 ggtaacaagt ttagttcatc tgacggaggg ggaagggatg ggagagaaag gaggcactaa
    31981 cggttaaata gcccgatgaa aggaatatca tcgggcataa ggcgattatg cgagaaccaa
    32041 atccccctgc ggatggcagg agcaggccag tacgtaacct tcagcgattt cggcgtcggt
    32101 cagcgtcatt gtactgctca ccgtatattc accggaaacc acttttgtct tacagcagcc
    32161 gcaaacaccc gcacggcagg cagcgacaac cggaacgtta ttgctttcca gcgcctccag
    32221 tagcgtggtg ccaaccgggg cgtaaaattc tcgtgccggt tgcagtttgg tgaatttcag
    32281 accgctggtc gccgcttttg ctactggggt gaagaatttc tctttaaaga aacgcgtcac
    32341 gccgagcgct ttcacttcct gctctaccca atccatatac ggagccgggc cgcaggtcat
    32401 cacggtacgt gaagctaagt caggtacacc tgccagcagt tctcgagtga gacgaccagc
    32461 gataaagcct tcggtaacgt tattttctgc caccagcgtt accggatagt tacgccactc
    32521 atcggcgaaa ataacatcct gcggcgtatg cacgttgtag atcacccgca catcggcctg
    32581 tggacggttc ttcgcaagcc agcgacgcat cgacataatc ggcgtgacgc cgcagcctgc
    32641 cgccagcaac aggaatttat cttctgcttt atcgtcgcag gtaaattccc ccatcgcgtc
    32701 cgaaagccag agataatcac cgcgttttac atcgcgcgtc agccactggg agccgacacc
    32761 gtcatcaatc cgccgcacgg tcagggtgat atattcactc acgcctggcg tggaggaaat
    32821 ggtgtaagca cgcagcgttt ccgctgagtt tcgcacgctg accagtgcat attgcccggc
    32881 gcgatatggg tagtaatcgt ggcaaatcag ggaaatcgtc cacacatccg gcgtttcttg
    32941 cgtaatgtga tgaacctgca tccgccacgg gcattgattc gttggcatcg tcatcgacaa
    33001 actccttacg cgctcaacag ttgcttcatg tcttcttcaa cagtggtgat agaacgcagg
    33061 ccgaatttct cgttcagcac cgccagcagg tctggtgtca ggaaaccagg tgcagtcggg
    33121 ccggtgacga tatttttcac gcccagagaa agcagcgtca gcagaatgac gatcgctttc
    33181 tgttcaaacc aggagagcac cagcgacagc ggcagatcgt tcacaccaca gcccagtttc
    33241 tctgccagag tgacagccag aataatcgct gagtaagcat cgttacattg acctgcatct
    33301 accagacgcg gcagaccttc gatatcgcca aactcaagtt tgttaaagcg atatttacca
    33361 caggcgaggg tcaggatcag gcagtcatcc ggcacgatgg tggcgaaatc ggtgaagtag
    33421 tggcgctcgc cgcgtgcgcc gtcacagcca ccaagcagga agatatgacg cagtttttca
    33481 cggctcacca gatcaatcag cgtatcagca gcgccaagca gcgtctggcg accaaaaccc
    33541 acggtgataa ggtgcggaat ttcgctgtac gggaagcctg ccatctgttg cgcctgggtg
    33601 ataaccgcag agaaatcatc accgtccaga tgacgcacgc caggccagcc aacaatgctg
    33661 cgggtccaga tacgatcgtc ataagcgctt acggttgggt cgatgatgca gttcgaggtc
    33721 atcacgatgg ggccagggaa acgagcgaac tccacttgct gattctgcca gccgctgccg
    33781 tagttaccga ccagatgctt gaatttacgc agctccgggt agccatgcgc aggcagcatt
    33841 tcgccgtggg tgtagacatt aacgcccgtg ccttcggtct gttccagcag gttgtagaga
    33901 tctttgagat cgtgaccgga aatcagaatg catttacccg ccgtcgcttt gacgttgacc
    33961 tgggttggcg tcgggtgacc gtatttaccg gtttcgcctg catccagaat gctcatcact
    34021 ttgaagttca tctggccgat ttccattgaa cactcaagaa gcgcgttcat atcggcaggc
    34081 caggtcccca gccacgccat gattttatgg tactgggcat aaatatcgtt gtcgtattga
    34141 ccgagaacat gcgcgtgttc catataggcc gccgcacctt tcaggccata caggcacagc
    34201 agacgcaggc cgagaatgtt ttcgccaatc gccgctttat ctttgttagg ggtaaattct
    34261 gctgcctgac gttgcagctc gccgagatca tcgctcacca gttgcaggtc agccatcggg
    34321 ttatcgacgc gcgcgttggc atctacagcc aggcattgtg ctttcagcgc ctcgcgcaag
    34381 gcaatcgctt cacgagcgta gccgacaata cgcggagaat cgaagttaac gttggtcagg
    34441 gttgagaaaa aggcacgtgg cgcgaagctg tcaacatcgt ggttgatgat gccgtattca
    34501 cgcgctttta ccgcccaggc agaaagccct tgcagcgccg cgatgagtaa atcctgaagg
    34561 tcagaagttt ccgccgtttt accacacatc ccctgcgcgt atgagcagcc gtttcctgcc
    34621 ggagtacgga tagtttgttc acattgcaca caaaacatga tcacaccttt taaagttata
    34681 tttaatatac atgtttaagg ttaagacgct taacgcgggg ataaaaggga tttttcatgc
    34741 aactttaagg gagattgatt tagcgcaatt ttggcggcag ggatctaccg ccagagaggt
    34801 attacgcaga gaaaaaggcg atgaggatcg gcactaacag gctaagaata aaaccgtgaa
    34861 caattgccgc cgggaccata tccagcccgc cagtacgttg aagaacgggc agggtgaaat
    34921 ccattgatgt ggcaccgcat aagcccagtg cagtagagcg gctgcggcga atcagcccag
    34981 ggatcaacat aatagcaatc agttcacggg ccagatcatt aaaaaacgcc gcgctcccga
    35041 ttaccggacc aaaagattcg gtcaataaaa taccggaaag agaataccag ccgaaaccgg
    35101 aggccattgc cagcgcggta ttgatgggga gatcaagaat aaaggcgtta attaaaccac
    35161 caattaatga actgacaacc accaccacgg cgacaatcat tccccggcga ttaaggacaa
    35221 tctgctttaa ggtcatgcca ttattgcgca actgaatacc aacgaggaaa agtagcaaaa
    35281 ttaacgtgta ttcactggct tcggtcgcgt gttgtaagaa agccagtcca ctcagaccaa
    35341 tggcaaaacc aatcactact acgccgcaca gttttagcga ctccagcgcc atcgcaatac
    35401 gcgacgggag tttttcttgc tgatggtggt tgcgccacgg caggcctcgc tccagccaca
    35461 tcagggcggc aatattacac agtaaaataa cggtaatact gacggcagaa taatgcagaa
    35521 tcgccaacag gttactggcg aggttatcga gaaacgccag actgataccc ataaaaaaga
    35581 gaataaggta aaccatccag cttaatagct gattaataac ttttaacgca gcttgttggc
    35641 gaagcggaat gaggtaaccc acaatcaggg gaaccagaat gattaacagc ccagaaaaca
    35701 tgaaaaccca gtccttgcaa agatgaagtc gaaatgcgcg atgacacact actgaaagcg
    35761 gaaggacgag taaagttgca attaaaagga aatgttatgc ataaggagca gtagagtatt
    35821 cgttttcatt taaagatatt cttgcgcttt aattacaaac tgcaccgatg ttggtggcgt
    35881 caaaatcgcc gaggcgttcc ctgaaggccg gggcagccca catggatgtg ggctgagggc
    35941 gcgttttaca gggatgttac ctcgcgcccg acccggtagc cgtaagggat aagtcgaggg
    36001 caccgcgcag cggcgatttt gttcgccaga gcccgggggg gcagggggcg gcggcgattg
    36061 gccgccccct gcgcgctcct tgcgccagtg gcaatatgtg gcttagctca tgaaaggagc
    36121 gcaacaagat gatgaatcaa catataacaa catcttaaaa aaagcctgac attacgctag
    36181 gccttctgcg ttaattaatc acgcttttcc agcagggtcc ggtaaatcag accaccgata
    36241 atgccgccga caattggcac cacccagaag aaccacagtt gttctaatgc ccagccgccc
    36301 tggaagatag caaccgcggt gctgcgcgcc gggttaacag aagtgttagt caccggaata
    36361 ctaattaagt gaatcagggt taaggccaga ccaatagcga tcggcgcaaa acctgccggc
    36421 gcgaatttgg cggttgcgcc gtggatcacc aacaggaaac ctgcactcaa taccagttca
    36481 actaccagcg cggaaagcat ggaataaccg cctggtgaat gctcgccata accgttagaa
    36541 gcaaaaccgc tggctgccgc gtcaaaaccc gttttaccac tggcaattaa atacagcagc
    36601 gccgctgcaa caataccgcc gacaacctgg gcaattacgt agccaacgac ttcttttgcc
    36661 ggaaaacgtc cgccagccca taaaccaata gtgaccgccg ggttaaaatg accaccagaa
    36721 atatgaccaa cagcaaaggc catcgtcaga acggtcagac cgaacgccaa cgccacgccg
    36781 gcaaaaccaa tgcctaattc cgggaagcct gcggccagta cagcactacc acagccacca
    36841 aaaacaagcc agaaagtacc aaaacattca gctgctaatt ttctgaacat atccacctca
    36901 attaaaaatt gaccctgtga aaaatatggt cgttttatag ggtcgtcgta aaaaaatgac
    36961 gacggaaata atgcgcggct attttaaaaa cgaaggcgag tcattcacca gataaataaa
    37021 tccagtaaat ttgatttagg gcaacagcgg gttgccccat atagtcattt gtctgattga
    37081 cagtgtagtg cacgcaaaag atttaatcct ttaggcgtaa taaaaaataa tatatcatgc
    37141 taattatttg attttgttgt ttttgcagac ttatcagcaa gagggagtat aacgcgatta
    37201 ttcgctcatt tttcagacat ttgccatgct taaatgtgat gtcatcacgt attagcaagg
    37261 cctttcccgt tatactgcca gcgtaaagga taagtcacat atttctggag gggatatgat
    37321 tcttgagcgc gttgaaattg tgggttttcg cggtatcaac cgtttgtcgt tgatgctgga
    37381 acaaaacaac gtcctgattg gggagaacgc gtggggtaaa tccagcttgc tggacgcctt
    37441 aaccctgctg ctatcgccag aatcagatct ctaccatttt gagcgcgacg atttctggtt
    37501 cccgccggga gatatcaacg ggcgagaaca tcatctgcat attattttga ccttccgcga
    37561 atcgctgcca ggccgacatc gggttcgccg ttatcggccg ctggaagcgt gctggacgcc
    37621 atgcaccgat ggctatcacc gtatttttta tcgtctggaa ggggagagtg cggaagacgg
    37681 cagcgtgatg acactgcgca gttttctcga taaagacgga catccgattg atgtcgagga
    37741 tattaacgat caggcacgcc atctggtgcg tttaatgccg gtgctgcgct tgcgtgatgc
    37801 ccgttttatg cgccgtattc gtaacggcac ggtgccaaat gtccctaatg tggaagtcac
    37861 cgcgcgccag ctcgatttcc tcgcccgtga gttatcctca catccgcaaa atctctctga
    37921 tgggcagatt cgtcagggac tttccgcaat ggtacagctg cttgagcatt atttctctga
    37981 gcagggggcc ggacaggcgc gatatcgttt aatgcggcgg cgggccagca atgagcaacg
    38041 aagctggcgc tatctggaca tcatcaaccg gatgattgac cgacctggag ggcgctcgta
    38101 tcgggttatt ttgctcggcc tgtttgctac tttattgcag gcaaaaggca cattgagact
    38161 ggataaagac gcgcgtccat tgttgctgat cgaagatcca gaaacccgtt tacaccccat
    38221 tatgctttca gttgcctggc atctgttgaa tcttctgcca ttgcagcgca ttgccaccac
    38281 caactcgggt gagttgcttt cgttaacgcc ggtagagcat gtttgccgac tggtacgtga
    38341 gtcctcgcgc gttgccgcct ggcgtctggg gccgagtggc ttgagtaccg aagatagccg
    38401 acgcatatcc tttcacattc gttttaaccg tccgtcatcg ctgtttgcac gctgctggtt
    38461 gctggtggaa ggggaaacgg aaacctgggt tatcaatgaa ctggcgcgtc agtgcggaca
    38521 tcattttgat gccgaaggga tcaaggtcat tgagtttgcc cagtccgggc taaagccact
    38581 ggttaaattt gcccgccgaa tggggattga atggcatgta ctggtcgatg gcgatgaagc
    38641 agggaagaaa tatgccgcta cggtacgcag cctgttgaat aacgatcggg aagccgaacg
    38701 agaacattta acggcgttac cggcgctgga tatggaacat tttatgtatc gccagggatt
    38761 ttccgatgtg ttccaccgcg tggcgcaaat cccggaaaat gtaccgatga atctacgcaa
    38821 aattatctcg aaagcgatcc atcgctcttc caaacccgat cttgccattg aagtggcaat
    38881 agaggcagga cgtcgtggtg tggactccgt accgacgctg ctgaaaaaaa tgttctcacg
    38941 cgtgctgtgg ctggcgcgcg gtcgcgcgga ttaaccgcga aacatcgtgg ccatttgtgg
    39001 ctgaatagcg tcgagcatct catagcgccg acggtattca gcccgttttt tactggcgat
    39061 ttcggcaatc tcttttcgtg ctatctgtgc tggaaggcgg taatggcgtt cagcatcaca
    39121 tacgccgcca accgattccc agaaagcgtt gtaatcagcg tggatcttgc cttctttatc
    39181 gcgataacgc aggctgcggt aaatatgcgt ttcattgctg acggcaataa tctgctctac
    39241 ctgcaaacgt tgggcaaaca gacaggccgc ttccatcacg aggcgtttgg gaaatagccc
    39301 gtggcaggct ttcgtcgcat tctggatttc ctgatgtgga atttcccatt ttgcgccttg
    39361 cagtccgcca ataaacatcg ttcttttccc ctgatattca cacagggtaa acgtgatctc
    39421 tgccagagga ataccttcgc tgttgcgaaa caggattgtg ctgtcacctt ctttatccat
    39481 tgagatcatc atggtcagct taagcgtgaa ctgctcgccg tttttgcctt ccagcttcgc
    39541 cagttgcagc ccgggggtat tcaaatataa gctgaattct tccgccgaca tacatccgcg
    39601 gagtaacgca taatggtaac gtaacgcctc cagcaattgc ttacggctaa gattcgccgc
    39661 aaggtaaggg cgatgcagac gcacaggcag tcgcggctgg cgcgttaaca acacattgag
    39721 attaggccag tgggaaagtt cgttcatcca ctcaacgctt aaacgcggca taatcaacga
    39781 gcgcagcaaa aatttctggc gaaaactacg gcgatgccag aatttacccg gccgacactg
    39841 tccacgtgcc agactaagaa aaagtgacag gctgctgaga gattcagatg gcgtaaaggt
    39901 ccgttcagtt agctgcgaca tattcatgaa atcattggtt atacatgacg tcgatttcac
    39961 cattgcgtat cttaaccaaa catcaatagt gtgattacta acgtaaattt tagggttttg
    40021 ttgatatttc gttgaagtta atgacccgga ttggcatatg gagtattcag aatatttatg
    40081 aaaaagcgga aaaccgtgaa gaagcgttac gttattgcgc tggtgatagt catcgccgga
    40141 ctgattacgt tatggagaat tcttaacgca cccgtgccga cttatcagac actgattgtg
    40201 cgccccggtg atttacagca aagcgtgctg gcgaccggaa agctggacgc gctgcgtaag
    40261 gttgatgtgg gcgcgcaggt cagcggtcag ttgaaaactc tgtcggtggc gattggcgat
    40321 aaagtaaaaa aagaccagct tttaggggtt attgatcctg aacaggctga aaaccagatt
    40381 aaggaggtcg aagcaacgct gatggagcta cgtgcgcagc ggcagcaggc ggaagcggag
    40441 ctgaaactgg cgcgggtgac gtattcccgt cagcaacgtc tggcacaaac gcaggcggtt
    40501 tcacagcagg atctcgacac cgccgcgacg gagatggctg tgaaacaggc gcaaattggc
    40561 accattgacg cggaaatcaa gcgcaatcag gcttctctcg atacggctaa aaccaatctc
    40621 gattacactc gcatcgttgc cccgatggcc ggggaagtca cgcaaatcac cactctgcaa
    40681 ggccagacgg tgattgccgc acaacaagca ccgaacattc tgacgctggc agatatgagc
    40741 accatgctgg taaaagcgca ggtttctgaa gcggatgtaa tccacctgaa gccggggcaa
    40801 aaagcttggt ttacggtgct tggcgatcca ctgacgcgct acgaggggca aatcaaggat
    40861 gtactaccga cgccggaaaa ggttaacgac gctattttct attacgcccg ttttgaagtc
    40921 cccaacccca atggtttgct gcggctggat atgactgcgc aagtgcatat tcagctcacc
    40981 gatgtgaaaa atgtgctgac gatccctctg tcggcgttag gcgatccggt tggcgataat
    41041 cgttataaag tcaaattgtt gcgtaatggt gaaacacgcg agcgtgaagt gacgattggc
    41101 gcacgtaacg ataccgatgt tgagattgtc aaagggctgg aagcgggcga tgaagtggtg
    41161 attggtgagg ccaaaccagg agctgcacaa tgacgccttt gctcgaatta aaggatattc
    41221 gtcgcagcta tcctgccggt gatgagcagg ttgaggtgct gaagggcatc accctcgata
    41281 tttatgccgg tgagatggta gcgattgttg gcgcttcagg ttccggtaaa tcgaccctga
    41341 tgaatattct cggctgtctg gataaggcca ccagcggcac ctatcgcgtc gccggtcagg
    41401 atgttgccac actggacgcc gatgcgctgg cgcaactgcg ccgcgagcat ttcggcttta
    41461 ttttccagcg ttaccattta ctttcgcatt taaccgccga gcagaacgtt gaagtacccg
    41521 ccgtctatgc cggtcttgag cggaaacagc ggctgcttcg cgcccaggag ttactgcaac
    41581 gactggggct ggaagaccgt acagagtatt atccggcaca gctttcgggt ggtcagcaac
    41641 agcgcgtcag catcgcgcgg gcattgatga acggcggtca ggtaattctt gccgatgaac
    41701 caaccggcgc actggacagc cattctggcg aagaggtgat ggcgatcctg catcagctgc
    41761 gcgatcgcgg gcatatggtg attatcgtca cccacgatcc gcaggtcgct gctcaggccg
    41821 agcgggtgat cgaaattcgc gacggcgaaa ttgtgcgcaa tcctcccgcc attgaaaaag
    41881 tgaatgttgc tggcgggacg gagcctgttg tcaacacggt gtctggctgg cggcagtttg
    41941 tcagcggttt taacgaggcg ctgacgatgg catggcgggc gctggcagcg aataaaatgc
    42001 gtactttact gaccatgctg gggattatta tcggtattgc gtcggtggtt tccattgtcg
    42061 tggtgggtga cgccgccaaa caaatggtgc tggcggatat tcgttctatt ggtacgaata
    42121 ctattgatgt ctatcccggg aaagattttg gcgatgacga tccgcaatat cagcaggcgc
    42181 tgaagtacga cgacttaatc gccatccaaa aacaaccgtg ggtcgcctca gccacacctg
    42241 ccgtctcgca aaacctgcgc ctgcgttata acaatgttga tgttgctgcc agtgccaatg
    42301 gcgtgagcgg cgattatttt aatgtctatg gcatgacctt cagtgaagga aacaccttta
    42361 atcaggagca gctgaacggt cgtgcgcagg tcgtggttct cgacagtaat actcgccgcc
    42421 agcttttccc ccataaagca gatgtggttg gcgaggtgat tctggtcggc aatatgcccg
    42481 ccagagtcat tggtgtggcg gaagaaaaac agtcgatgtt tggtagcagt aaagtgctgc
    42541 gtgtctggct accttacagc acgatgtccg ggcgagttat gggccagtcg tggctgaact
    42601 ccattactgt cagggtaaaa gaaggatttg acagcgccga ggcggaacag caactcacgc
    42661 gtttactttc actgcgccac ggaaagaagg atttctttac ctggaacatg gacggcgtct
    42721 tgaaaactgt tgaaaagacc acacgtactt tacaactgtt tctgacgctg gtggcggtga
    42781 tttcgctggt ggtgggcggt attggtgtaa tgaatattat gctggtgtca gtgaccgagc
    42841 ggacgcggga aattggcatt cgcatggctg taggtgcgcg agcaagcgat gttttgcaac
    42901 agttcctgat cgaagccgta ctggtttgct tggtcggtgg cgcgttggga ataacgctgt
    42961 cactgttaat tgctttcacc ttgcagcttt tcttacccgg ctgggagatt ggtttttcac
    43021 cgttggcact gctgctggcg tttctctgct cgacggccac cgggatttta tttggatggt
    43081 tacccgcacg aaatgcggca cgactggatc cagtagatgc tctggtacga gagtaatttt
    43141 tgagataaaa atgccagccg atcgggctgg cattttgcct ttaggatgta cacaatgaga
    43201 cagaagagct atgcgactgc cgcttctact tcgacgggca caataacact ggcgtgattg
    43261 ccttttggcc cctggtggac atcaaactga acggattgtc cagcttttag cgttctgtaa
    43321 ccatccatct gaatggtgga ataatgagcg aaaatatctt cgccgccgcc ttcagggcag
    43381 atgaaaccaa accctttggc attgttgaac cacttaacag tacccttttc catgcttcga
    43441 catccttcgc aaatcttata caagtaagat ggaataaacc ggggtcagag agggggctgt
    43501 tcaaaacctc gccaactcta gaaatacaat ttagagaatt agggcgagcc gtcaagcgtt
    43561 tgacaggggc cagggggcag gtatgaatca aaaatttgaa gcagttaacg ctattgacag
    43621 gaatgtgaca gatgtcgctg atgccaacga tagatgatag ttatctatca tgtggagtag
    43681 attggtcagg caaataagct cttgtcagcg gcagggcgtt ctgccgataa ccgtaaccga
    43741 agatgataac tgacaatggg taaaacgaac gactggctgg actttgatca actggcggaa
    43801 gaaaaagttc gcgacgcgct aaaaccgcca tctatgtata aagtgatatt agtcaatgat
    43861 gattacactc cgatggagtt tgttattgac gtgttacaaa aattcttttc ttatgatgta
    43921 gaacgtgcaa cgcaattgat gctcgctgtt cactaccagg ggaaggccat ttgcggagtc
    43981 tttaccgccg aggttgcaga aaccaaagtg gcgatggtga acaagtacgc gagggagaat
    44041 gagcatccat tgctgtgtac gctagaaaaa gcctgaatgc aggcataaaa attgggggag
    44101 gtgcctatgc tcaatcaaga actggaactc agtttaaata tggctttcgc cagagcgcgc
    44161 gagcaccgtc atgagtttat gaccgtcgag cacttgttac tggcgctgct cagtaaccca
    44221 tctgcccggg aggcgctgga agcgtgttct gtggatttgg ttgcgctccg tcaggaactg
    44281 gaagccttta ttgaacaaac cacacccgtt ctgcctgcca gtgaagagga gcgcgacaca
    44341 cagccgacgc tgagttttca gcgtgtactg caacgtgcgg tcttccatgt ccagtcctcc
    44401 ggtcgcaatg aggtaaccgg tgcaaacgtt ctggtcgcta tctttagcga acaggagtcg
    44461 caggcggcat atctgttgcg taaacatgaa gtcagccgtc tcgatgtggt gaactttatc
    44521 tctcatggca cgcgtaaaga cgagccgaca cagtcttctg atcctggcag ccagccaaac
    44581 agcgaagaac aagctggtgg ggaggaacgt atggagaatt tcacgacgaa cctgaatcag
    44641 cttgcgcgcg tgggcggaat cgacccactg attggtcgtg agaaggagct ggagcgtgct
    44701 attcaggttc tctgccgtcg ccgtaaaaac aacccgctgc tggtggggga atctggtgtc
    44761 ggtaaaaccg cgattgcgga aggtcttgcc tggcgaattg ttcagggcga tgtgccggaa
    44821 gtgatggctg actgtacgat ttactctctc gatatcggtt ctctgttagc gggcactaaa
    44881 tatcgcggcg actttgaaaa acgttttaaa gcgttgctca agcagctgga gcaggacact
    44941 aacagcatcc tgtttattga tgagatccac accattatcg gtgcgggtgc agcgtctggt
    45001 ggccaggtcg atgcggctaa cctgatcaaa ccgttgctct ccagcggtaa aattcgcgta
    45061 attggttcga caacctatca ggagttcagc aacattttcg agaaagaccg tgctctggcg
    45121 cgtcgcttcc agaaaattga tattactgaa ccgtcgatcg aagaaactgt tcaaatcatc
    45181 aatggcctga aaccgaagta tgaagcgcac cacgacgtgc gttataccgc aaaagcggtg
    45241 cgtgcagcgg tagagctggc ggtgaaatac attaacgatc gtcatctgcc ggataaagcc
    45301 attgacgtta tcgacgaagc gggcgctcgc gcacgcctga tgccggtaag caaacgcaag
    45361 aaaaccgtta atgtggcgga tattgagtcc gtggtggccc gtattgcgcg cattccagag
    45421 aagagtgttt ctcagagtga ccgcgatacc ctgaaaaacc tcggcgatcg cctgaaaatg
    45481 ctggtcttcg gtcaggataa agccattgag gcgctgactg aagccattaa gatggcgcgt
    45541 gcaggtttag gtcacgaaca taaaccggtt ggttcgttcc tgtttgccgg ccctaccggg
    45601 gtcgggaaaa cagaggtgac ggtacagctt tcgaaagcgt tgggcattga gctgctgcgc
    45661 tttgatatgt ccgagtatat ggaacgccat accgtcagcc gtctgattgg tgcgcctccg
    45721 ggatacgttg gttttgatca gggaggtttg ctgactgatg cggtcatcaa gcatccacat
    45781 gcggtgctgt tgctggacga aatcgagaaa gcgcatccgg acgtgttcaa tattctgttg
    45841 caggtgatgg acaacggtac gctgaccgat aacaacggac gcaaagcgga cttccgtaac
    45901 gtggtgctgg tgatgaccac caacgccggg gtacgtgaaa ctgagcgtaa atccattggt
    45961 cttatccacc aggataacag caccgatgcg atggaagaga tcaagaagat ctttacaccg
    46021 gaattccgta accgtctcga caacattatc tggttcgatc atctgtcaac tgacgtgatc
    46081 catcaggtgg tggataaatt catcgtcgag ttgcaggttc agctggatca gaaaggtgtt
    46141 tctctggaag tgagccagga agcgcgtaac tggctggccg agaaaggtta cgaccgggca
    46201 atgggcgcac gtccgatggc gcgtgtcatc caggacaacc tgaaaaaaac gctcgccaac
    46261 gaactgctgt ttggttcgct ggtggacggc ggtcaggtca ccgtcgcgct ggataaagag
    46321 aaaaatgagc tgacttacgg attccagagt gcacaaaagc acaaggcgga agcagcgcat
    46381 taatctgatt gttaggtagg ttggtcaagt ccgtaatctc gaaagaggtt acggactttt
    46441 tgtttatggg gtggaggagg ttcagaccct ttttttaatg atgatggtaa gttgttgata
    46501 attagtgctg cgggaaggta aggataaaaa agggtgctgc aggagaatgg gatggttttg
    46561 ctttatttac aacgggctaa acgtgtagta tttgagttca ctgccgtaca ggcagcttag
    46621 aaattcacag gtaacatact ccacccgccc accatgttca ctgccgtaca gacagataaa
    46681 atgcgaaaaa aaagctcgca ctttcgtacg agctcttctt taaatatggc ggtgaggggg
    46741 ggattcgaac ccccgatacg ttgccgtata cacactttcc aggcgtgctc cttcagccac
    46801 tcggacacct caccaaattg ttttgctacc aaacctcatg ggtggcaacg gggcgctact
    46861 atagggagtt ggagtaaaac ggtcaagaag aattttaatg ataattattg tttgctcata
    46921 ctgtaaacaa gttgtgcagt atatctacat cgagacaagt tacggactta tacttccaaa
    46981 gtacttcata catatcacaa aataaaaagg ccggttaaac cgacctttta ctcgttcttt
    47041 ctcttcgccc atcaggcggt aaaacaatca gcgactacgg aagacaatgc ggcctttgct
    47101 caggtcgtac ggggtcagtt caacagtcac tttgtcgccc gtcaggatgc ggatgtagtt
    47161 tttgcgcatt ttaccggaga tgtgtgcagt aaccacgtga ccgttttcta actctacgcg
    47221 gaacatggta ttaggcaacg tttcaagaac ggtaccttgc atttcaatat tgtcttcttt
    47281 ggccatctaa tcctctgggg tatcactacc gtaatttgaa ccggcaagat aatgccgaag
    47341 ttctgtaaat aagtaaagat ttgcgcgcta aatcgcaaca aacaggttcg gcacattact
    47401 ccgaaaacac acggctaagc cgcaccaaaa gcgcaacgta taagggagcg gtgagataaa
    47461 cgatgggcgt tacctgacgc gaaaaattcc ttatcggcag cggggtaatg agcgtaacca
    47521 actctgcgac cgcaattata acactctggg gagaaatgtg ccgaaaacat tcattcttgt
    47581 ggtgaaaaca agcatcgtgg tacccagaaa ttattcggca atcgtccgag gcgcatttga
    47641 ttgagataat taaggtaatc ccggcgggga atttcgcagg caccaagcga tgctgtgtga
    47701 tcgttaagga cctggcagtc gataagctta ccgccatgac cgataaattc cttacagaat
    47761 accagaagcg ccgttttaga cgcattttcc atccggctga acatggactc gccacaaaat
    47821 agcgttccct gggccacgcc gtacataccg ccgacaagct catcttcacg ccagacttca
    47881 atggagtggg catggccgag ttcgtgaagg cgatggtagg cttcgaccac gccacgcgtg
    47941 atccaggttc cttcttcgcg atcgctggca cagccttcaa tgacctgacc aaaagcgtaa
    48001 ttcatcgtga cacgataggg cgagcgttta tgaaatcgct tcatactacg gctgatatgc
    48061 agtgattctg gccatagcac cgcgcgggga tcgggcgacc accagaggat ggggtcgcct
    48121 ggagaaaacc acggaaaaat accacgctgg taagccatta acaggcgcgc agggctaaga
    48181 tcgcccccaa gtgccagcag gccgttaggc tcacgtaatg cgccttccgg ggaagggaag
    48241 gctattgaat ggcgagaaag ctgaaccagg cgcatgaccg caaaactcca cgcaagtcgg
    48301 atcgttcaat aatagcttac aaaccctgct tgaactggta ataacgcccc tgtctggcaa
    48361 gcagctctgc gtgagtacct tgctcaataa tttgcccgtt gtccatcact attatttgtt
    48421 ggaaacgaga gagtccgcga agtcgatggg tgaccattaa caccgttttc tcacgcatca
    48481 tttctgcaag caattcaagg atctggcttt cggttgtggc atctaagcct tcggtaggtt
    48541 catccagcaa caccagtggc gcatcatgta acagcgcacg ggtgatagcc agacggcgca
    48601 gttcaccacc ggagagctgg cgtccgcctt cacctaacca actgttgaga cctgcatcct
    48661 cgagcagctt ctccagacca acgcgacgca agctctccgc cagagcctca tcactactgc
    48721 caggcgaggc gagtaacaga ttatcacgca gcgtggcgct aaacagatgc actcgctgag
    48781 gaacaacgct gatggtctgt cgtagagccg cttcattcag gctggctatg gggctatcgt
    48841 taagcaaaat ctcgccctgt tgcgggtccc aagcgcgggt cagcagttgt aacagtgttg
    48901 atttgccgca tccggttcgc ccgagaatcg caatatgttc cccggcgttt acctgaagag
    48961 aaatcccttt aagtgcctgt tgggattgct ccggataagt gaactgaaca tcccgtaatg
    49021 tcagcgaaac gcgatcggca acacgagttt gggtatcagg gaaggtgact tccggttttt
    49081 gatccgttaa atcagtgatc cgaacggcag aggcaatgac ttgccccaga tgctgaaatg
    49141 cacccgttac tggtgccagt gcttcaaacg cggctaacgc gcagaagaca aacagggcaa
    49201 ttaacgcgcc gggttgagca ttgccgccaa cgccgccaga cgccatccac agcatcagga
    49261 tcaccgctaa cgcgccaatg agcagcatta tcgcttgcga caatgcggtc agttcagatt
    49321 gacggcgttg cgcttccagc cattgaattt ctgtattctc tagttgcgtg cgataacgat
    49381 cgctggcacc aaaaatggtc agctcagctt gcccttgcag ccaggccgtc agttgttggc
    49441 gatactgtcc gcgaagatga gtcagatttt gcccggtgct ttttcccgca cgataaaaca
    49501 gcggtggcat caggaaaagc gtcagtaaca taatgccgcc cagcgtaaag gcgagggtga
    49561 aatcaaggaa acttaacccg attgtcacca tcataatcac cacaaaagcg cccaccagcg
    49621 gcgagataac gcgcaggtaa agatgatcga gcgtatcaac atccgccacc acgcgattga
    49681 gcaattcgcc ctgacgatag cgcgccagtc cggcagggga gaggggcaac aatttgctga
    49741 aggtgtaaat gcgcagatgc tgcaacacgc ggaaagtcgc gtcgtgactt accagacgtt
    49801 caaaataacg cccggcagta cgggtgattg cggcaccacg cacgcccgca gcgggtagca
    49861 tatagttgaa gctgtacagt ccggcaaccc ccgcaaccgc tgaggccgag aggaaccagc
    49921 cggaaagtgt caacagtccg atactggcga gcagcgtcac aattgccagc acaataccaa
    49981 gacttaacat ccatttatga cgtttataca gtgctagata gggtagcaaa gcgcgcattt
    50041 aaatctcctc ctgacgatgg gccagtaatg tggcgaatgg gccaccagcc acacttaatt
    50101 ccgcgtaacg tccttgctca ataatccggc catcctgcat aacccaaatg acatcccagt
    50161 cagcaagatc ttctaactgg tgggtgacca ttaacgttgt ctggcgcaga gaggcggcat
    50221 tcagcgcctc cattacgcgc tgttcactgt gagcatcaag gctggcagcg ggttcatcca
    50281 acagtaatag cgaacaggga tttagtaacg cacgggccac cgccacgcgc tgcgcctgcc
    50341 ccacggaaag gcgggcagcc tggtcgccaa caggcgtatc aacgccttgt ggcaggagcg
    50401 gtagaaactc gctgacccag gcgttatcca gcgctgcttg taattcatgt tcgctggcat
    50461 caggtcgcgc cagtagtacg ttatcccgta atgttgctgc cggtaattgt ggattttgcc
    50521 caacccagga gagatgttta cgccatgatt ctggtgataa atcgcgtaat tctatcccgt
    50581 tgattcgtag cgatccctga tatgagagaa aaccagaaag cgcgttcaac agtgaacttt
    50641 tacctgaacc gctgcgacca accaacacgg cacgttggcc tgctggcaaa gtaaagttca
    50701 gcggtccggc cagcgtttta ccttccggcg acgtgataaa cagatcctcg gcctcaatgg
    50761 tcaccggatc ggtcgatgct aattccacct cgccacactg cggatgggcg agcggggttt
    50821 ccataaacgt tttcagactg tcagctgcac caacagcctg ggctttagca tgataaaacg
    50881 taccgagatc gcgtaatggc tggaaaaact ctggcgcaag gatcagggcc agaaaacccg
    50941 cagccagcgt cacgccagta tcgtagtgac caaaatccag ctcgccaaga taggaaaaac
    51001 caaagtagac cgccaccaga gcaattgaca gcgaggtaaa aaattcgaga atgccggagg
    51061 ataaaaatgc cagccgtagc acttccattg tccgttggcg gaaatcttcc gaagcagaac
    51121 gaatactttc aatttcagct tcaccacgac caaaaatacg caatgtttcc atgccgcgca
    51181 ggcgatcgag gaaatgccca cttaagcgag caagagcgag aaagttacgt cggttagcat
    51241 cggcagcccc cattccaacc agcgccataa acaacggaat taacggtgca gtgcccagca
    51301 gaatgagcgc cgcagcccag tttgagggga agattgccac cacaatcagc aacggcaccg
    51361 acactgccag cgccatttgc ggcaggtagc gtgcatagta atcatgcata tcgtcaattt
    51421 gctcgagtac cagcgtcgcc cagctccccg caggtttacc ctgaatccac gctggccctg
    51481 cttgttgcag acggtcgaga acctgccggc ggatggcaaa gcggatatgc tgcccggcgt
    51541 gataacccac ccgttcgcgt aaccagacca cccatgcgcg cagtacaaag gtcagaacca
    51601 gtaacgtaaa gggaagcagc agggcttcac ggggaatatt ctccataatc atatgttgca
    51661 gaattcgcgc catgaaccag gcctgggcaa tgatcaatat gccgctcaca aagcccagca
    51721 gacgagaaat attcagccaa cgttgggaga tgacgctttg ctgttttaac cagcgggtta
    51781 actctttttg acgagattta ttcattgcac gcttagcagg tgagttatca gaattatttg
    51841 cagagcaatg ttacaacggg gaaaaaataa aggcgaccca tagtcgcaag gtgtcgcctt
    51901 ctttactttt gttactgatt tgtaaaatta ttttgcgtca gctaaaccat cgaggtagcg
    51961 ttccgcatca agtgctgcca tgcagcctgt accggccgaa gtaatggcct gacgataaat
    52021 atgatccatc acgtcacccg cggcaaagac gccaggaatg ctggtctggg tggcattacc
    52081 atgaataccc gactgtactt tgatgtagcc gttttccagt tccagctgcc cttcgaaaat
    52141 ggcagtattc gggctgtgac cgatagcaac aaacagaccg gcaacgtcga gtgattcgat
    52201 gttatcgctg ttttgcgtat cgcgcagacg aacgccagtg acacccattt gatcgccggt
    52261 cacttcttcc agcgtccggt tggtgtgcag aatgatgttg ccgttctcca ctttatccat
    52321 cagacgctta atgaggattt tttccgcgcg gaaaccgtca cggcggtgaa tcagatgtac
    52381 ttccgaagcg atgttagaca gatacaacgc ctcttcaacc gcggtattgc cgccgccgat
    52441 gaccgcaact ttctggttgc gatagaagaa accgtcgcag gttgcacaag cagaaacccc
    52501 acggccttta aaggcttctt cagagggcag gccgagatag cgtgcagaag ctccggtggc
    52561 aataatcagc gcgtcgcaag tgtattcgcc gttatcgcca ttcagacgga acggacggtt
    52621 ttgcagatcc accttgttga tatgatcaaa aatgatttca gtttcaaatt tggtggcatg
    52681 ttcgtgcatg cgctccatta ataacggacc ggtcagatcg tttggatcgc caggccagtt
    52741 ttccacttct gtggtggtgg tcagttggcc gcctttttcc atgccggtaa tcagcacagg
    52801 ttgcaggttg gcgcgcgccg catagacagc agcggtgtat cccgccgggc ctgaacccag
    52861 gataagcagt ttactgtgtt tggtcgtgcc catgagatcc ccatagttgt tggcagacaa
    52921 tgggcaggat tgtagggaat ttactgacgt aaaaaaagag tatgacgatt ttgttaacaa
    52981 tttgtgcaat cggcagcatc gataagcagg tcaaattctc ccgtcattat cacctctgct
    53041 acttaaattt cccgctttat aagctgatta aatgatgaat aaacgcccct gttaatgaat
    53101 atctggcatg ttgtactaaa aatcgatgtt ttgctttgac aatcccctgg tgttttgcga
    53161 aaacattcga ggaagaaaaa aaacagtatt cttatatgcg cataaccatg catgtaaata
    53221 ccatgtttac cgtgctagtg aaatctacgt atggcgtgga cagacgccat tcgtgatgtc
    53281 gatagctgcc acaaggcaac ggtcttctca ccgtagaccc aggcattgcg cgccgtgaat
    53341 cttcatgatt tcggtctatc gtgacgggta gcgactctga acagtgatgt ttcagggtca
    53401 gacaggagta gggaaggaat acagagagac aataataatg gtagatagca agaagcgccc
    53461 tggcaaagat ctcgaccgta tcgatcgtaa cattcttaat gagttgcaaa aggatgggcg
    53521 tatttctaac gtcgagcttt ctaaacgtgt gggactttcc ccaacgccgt gccttgagcg
    53581 tgtgcgtcgg ctggaaagac aagggtttat tcagggctat acggcgctgc ttaaccccca
    53641 ttatctggat gcatcacttc tggtattcgt tgagattact ctgaatcgtg gcgcaccgga
    53701 tgtgtttgaa caattcaata ccgctgtaca aaaacttgaa gaaattcagg agtgtcattt
    53761 agtatctggt gatttcgact acctgttgaa aacacgcgtg ccggatatgt cagcttaccg
    53821 taagttgctg ggggaaaccc tgctgcgtct gcctggcgtc aatgacacac ggacatacgt
    53881 tgttatggaa gaagtcaagc agagtaatcg tctggttatt aagacgcgct aacacggaac
    53941 aggtgcaaaa tcggcgtatt ttgattacac tcctgttaat ccatacagca acagtactgg
    54001 ggtaacctgg tactgttgtc cgttttagca tcgggcagga aaagcctgta acctggagag
    54061 cctttcttga gccaggaata cactgaagac aaagaagtca cattgacaaa gttaagtagc
    54121 ggccgtcgcc ttctggaagc gttgctgatc cttattgtcc tgtttgccgt ctggttgatg
    54181 gctgccttac taagctttaa cccttcggac cccagctggt cgcaaacggc ctggcatgaa
    54241 cctatccata atttaggtgg gatgcccggt gcgtggctgg cagatacgct gttctttatt
    54301 tttggcgtga tggcttacac cattcccgtc attattgtcg gcggttgttg gtttgcctgg
    54361 cgtcatcagt ccagtgacga atacattgat tattttgccg tttcgttacg catcattggc
    54421 gttttggcgc tcatccttac ctcctgtggt ctggcggcaa tcaacgctga cgatatctgg
    54481 tattttgcct ccggtggcgt cattggcagc ttactaagca ctacgttaca accactgcta
    54541 cacagtagcg ggggaactat tgcgctgctc tgcgtttggg ctgcgggcct gacgctgttc
    54601 accggttggt catgggtgac cattgctgaa aaactcggcg gctggatttt aaacattctc
    54661 accttcgcca gtaatcgtac ccgtcgcgat gatacctggg tcgatgaaga tgaatatgaa
    54721 gatgacgaag agtatgaaga tgaaaaccac ggcaaacagc atgaatcacg ccgtgcccgt
    54781 attcttcgcg gcgcgctagc gcgtcgtaaa cggttggcgg aaaaattcat taatccgatg
    54841 gggcggcaaa cagacgctgc gttgttctcc ggtaagcgga tggatgatga agaagagatt
    54901 atctacactg cacgcggtgt ggctgccgac ccggacgacg tcctattttc gggcaatcgt
    54961 gcaacgcagc cagaatatga cgaatacgat ccattattaa acggtgcgcc aattaccgaa
    55021 cctgttgctg tagcagctgc tgctaccacg gcgacacaaa gctgggctgc gccggttgaa
    55081 cctgtgaccc agacgccgcc tgttacttct gttgatgttc caccttcgca acctacagta
    55141 gcctggcagc ctgtaccggg tccacaaacg ggagagccgg ttattgctcc tgcaccggaa
    55201 ggttacccac agcagccaca atatgcgcag cctgcagtgc aatataatga gccgctgcaa
    55261 caacctgtac agccacagca gccgtattat gcgcctgcag ctgaacaacc tgtgcaacaa
    55321 ccttactacg ctcctgcggc ggaacaacct gttcagcaac cgtattacgc aactgcgccg
    55381 gaacagcctg cgcaacagcc gtattatgcc cctgcgccag aacaaccggt ggcaggtaac
    55441 gcctggcaag ccgaagagca gcaatccact tttgctccac agtctacata ccagactgag
    55501 caaacttatc agcagccagc cgctcaggag ccgttgtacc aacagccgca acccgttgaa
    55561 cagcagcctg ttgtggagcc tgaacccgtt gtagaagaga caaaacccgc gcgtccgccg
    55621 ctttactatt ttgaagaagt ggaagagaag cgagcccgtg aacgtgaaca acttgcggcc
    55681 tggtatcaac cgattccaga accggttaaa gaaccagaac cgatcaaatc ttcgttgaaa
    55741 gcgccttctg ctgcagcagt acctccagta gaagccgctg ccgctgtttc tccgctggca
    55801 tctggcgtga aaaaagcgac actggcgacg ggggctgccg caaccgttgc cgcgccagtc
    55861 ttcagtctgg caaatagcgg tggaccgcgt ccgcaagtca aagagggaat tggcccgcag
    55921 ttgccacgac cgaaacgtat tcgcgtgcca actcgtcgtg aactggcgtc ttacggtatt
    55981 aagctgccct cacagcgtgc ggcggaagag aaagcccgtg aagcccggcg caatcagtat
    56041 gattctggcg atcagtataa cgatgatgaa atcgatgcga tgcagcagga tgaactggca
    56101 cgtcagttcg cccagacaca gcagcaacgc tatggcgaac agtatcaaca tgatgtgccc
    56161 gtaaacgcag aagatgcaga tgctgcggca gaggctgaac tggctcgtca gtttgcgcaa
    56221 actcaacaac aacgttattc cggcgaacaa ccggctgggg cgaatccgtt ctcgctggat
    56281 gattttgaat tttcgccaat gaaagcgttg ctggatgatg gtccacacga accgttgttt
    56341 acgccaattg ttgaacctgt acagcagccg caacaactgg ttgcaccgca gcagcagtat
    56401 cagcagccac aacagccggt tgcgccacag cagcaatatc agcagccgca acagccggtt
    56461 gcgccgcagc cgcagtatca gcagccacaa cagcaggttg cgccgcagcc acaatatcag
    56521 cagccgcaac aaccggttgc accgcagcag caggataccc tgcttcatcc gctgttgatg
    56581 cgtaatggcg acagccgtcc gttgcataaa ccgacgacgc cgctgccttc tctggatttg
    56641 ctgacaccgc cgccgagcga agtggagccg gtagatacct ttgtgcttga acaaatggct
    56701 cgcctggtgg aagcgcgtct ggctgatttc cgtattaaag ccgatgtcgt caattactct
    56761 ccggggccgg ttatcactcg ctttgaactt aacctggctc ctggcgtaaa agcggcgcgc
    56821 atttctaact tgtcacggga ccttgcccgt tcactttcga cggtggcggt gcgtgtcgtt
    56881 gaagttattc ctggcaaacc ctatgtaggt ctggagttac caaataaaaa acgacaaacc
    56941 gtttatctgc gcgaagtttt ggataacgcc aaattccgcg ataatccgtc gccattaacc
    57001 gtggtgctgg gtaaagatat cgccggtgag ccggtggttg ccgatctggc gaaaatgccg
    57061 cacttgttgg ttgcggggac taccggttcc ggtaaatctg tcggtgtgaa cgcgatgatc
    57121 ctgagcatgc tttataaagc acagccagaa gatgtgcgtt tcatcatgat cgacccgaaa
    57181 atgctggagc tttcggttta tgaaggcatt ccgcatctgt taacggaagt cgttactgat
    57241 atgaaagatg ccgccaacgc gctgcgctgg tgtgttaacg agatggagcg tcgttataaa
    57301 ctgatgtctg cgctgggtgt gcgtaatctg gcgggttata acgaaaaaat tgctgaagcc
    57361 gatcgcatga tgcgtccgat tccagacccg tactggaagc cgggtgacag tatggatgcc
    57421 cagcatccgg tgctgaaaaa agaaccatac attgtggtgt tggttgacga atttgccgac
    57481 ctgatgatga cggtaggtaa aaaagtggaa gagctgatag cacgtctggc gcaaaaagcc
    57541 cgtgccgcgg gtatccacct cgtactggca actcagcgtc catcggttga tgttattact
    57601 ggtctgatta aagcgaatat tccgacccgt atcgccttta ccgtatccag taagattgac
    57661 tcacgtacca ttcttgatca ggctggcgcg gaatcactgc tggggatggg ggatatgctc
    57721 tactctgggc cgaactccac gttgccggta cgtgtccatg gtgcttttgt tcgcgatcag
    57781 gaagttcatg ccgtggtgca ggactggaaa gcgcgtggtc gcccacagta tgttgatggc
    57841 atcacttccg acagtgaaag cgaaggtggc gcgggcggtt tcgatggcgc tgaagaactg
    57901 gatccgttgt tcgatcaggc ggtgcagttt gtcactgaaa aacgcaaagc gtcaatttct
    57961 ggcgtacagc gtcagttccg cattggttat aaccgtgcag cgcgtattat cgaacagatg
    58021 gaagcgcagg ggattgtcag cgaacagggg cacaacggta atcgtgaagt gctggcccca
    58081 ccgccgtttg actaattaat gcattgccgg ataaggcgcg gtagcgtcgc atccggcact
    58141 ctatcaactg aaaattcagt attttctttt ttcctcaagc tgattattag cctggaatag
    58201 agagtagagg gaactcccga tcgggagtga cgtaatttga ggaataatga tgaaaaaaat
    58261 tgccatcacc tgtgcattac tctcaagctt agtagcaagc agcgtttggg ctgatgccgc
    58321 aagcgatctg aaaagccgcc tggataaagt cagcagcttc cacgccagct tcacacaaaa
    58381 agtgactgac ggtagcggtg cggcggtgca ggaaggtcag ggcgatctgt gggtgaaacg
    58441 tccaaactta ttcaactggc atatgacaca acctgatgaa agcattctgg tttctgacgg
    58501 taaaacactg tggttctata acccgttcgt tgagcaagct acggcaactt ggctgaaaga
    58561 tgccaccggt aatacgccgt ttatgctgat tgcccgcaac cagtccagcg actggcagca
    58621 gtacaatatc aaacagaatg gcgatgactt tgtcctgacg ccgaaagcca gcaatggcaa
    58681 tctgaagcag ttcaccatta acgtgggacg tgatggcaca atccatcagt ttagcgcggt
    58741 ggagcaggac gatcagcgca gcagttatca actgaaatcc cagcaaaatg gggctgtgga
    58801 tgcagcgaaa tttaccttca ccccgccgca aggcgtcacg gtagatgatc aacgtaagta
    58861 gaggcacctg agtgagcaat ctgtcgctcg atttttcgga taatactttt caacctctgg
    58921 ccgcgcgtat gcggccagaa aatttagcac agtatatcgg ccagcaacat ttgctggctg
    58981 cggggaagcc gttgccgcgc gctatcgaag ccgggcatct gcattctatg atcctctggg
    59041 ggccaccggg taccggcaaa acaactctcg ctgaagtgat tgcccgctat gcgaacgctg
    59101 atgtggaacg tatttctgcc gtcacctctg gcgtgaaaga gattcgcgag gcgatcgagc
    59161 gcgcccggca aaaccgcaat gcaggtcgcc gcactattct ttttgttgac gaagttcacc
    59221 gtttcaacaa aagccagcag gatgcatttc tgccacatat tgaagacggc accatcactt
    59281 ttattggcgc aaccactgaa aacccgtcgt ttgagcttaa ttcggcactg ctttcccgtg
    59341 cccgtgtcta tctgttgaaa tccctgagta cagaggatat tgagcaagta ctaactcagg
    59401 cgatggaaga caaaacccgt ggctatggtg gtcaggatat tgttctgcca gatgaaacac
    59461 gacgcgccat tgctgaactg gtgaatggcg acgcgcgccg ggcgttaaat acgctggaaa
    59521 tgatggcgga tatggccgaa gtcgatgata gcggtaagcg ggtcctgaag cctgaattac
    59581 tgaccgaaat cgcaggtgaa cgtagtgccc gctttgataa caaaggtgat cgcttttacg
    59641 atctcatttc cgcactgcat aaatcggtac gtggtagcgc acccgatgcg gcgctgtact
    59701 ggtatgcgcg aattattact gccggtggcg atccgttata tgttgcgcgt cgctgtctgg
    59761 cgattgcgtc tgaagatgtg ggtaatgctg atccacgagc gatgcaggtg gcaattgcag
    59821 cctgggattg ctttactcgc gttggcccgg cggaaggtga acgcgccatt gctcaggcga
    59881 ttgtttacct ggcctgcgcg ccaaaaagca acgctgtcta cactgcgttt aaagctgcgc
    59941 tggcggatgc tcgcgaacgt ccggattatg acgtgccggt tcatttgcgt aatgcgccga
    60001 cgaaattaat gaaggaaatg ggctacgggc aggaatatcg ttacgctcat gatgaagcaa
    60061 acgcttatgc tgccggtgag gtttacttcc cgcgggaaat agcacaaaca cgctattatt
    60121 tcccgacaaa caggggcctt gaaggcaaga ttggcgaaaa gctcgcctgg ctggctgaac
    60181 aggatcaaaa tagccccata aaacgctacc gttaatgtta tcgttgcggt aatgttgtta
    60241 ctgtatccct gtggtcgcag gctgtggcca catctcccat ttaattcgat aagcacagga
    60301 taagcatgct cgatcccaat ctgctgcgta atgagccaga cgcagtcgct gaaaaactgg
    60361 cacgccgggg ctttaagctg gatgtagata agctgggcgc tctcgaagag cgtcgtaaag
    60421 tattgcaggt caaaacggaa aacctgcaag cggagcgtaa ctcccgatcg aaatccattg
    60481 gccaggcgaa agcgcgcggg gaagatatcg agcctttacg tctggaagtg aacaaactgg
    60541 gcgaagagct ggatgcagca aaagccgagc tggatgcttt acaggctgaa attcgcgata
    60601 tcgcgctgac catccctaac ctgcctgcag atgaagtgcc ggtaggtaaa gacgaaaatg
    60661 acaacgttga agtcagccgc tggggtaccc cgcgtgagtt tgactttgaa gttcgtgacc
    60721 acgtgacgct gggtgaaatg cactctggcc tcgactttgc agctgcagtt aagctgactg
    60781 gttcccgctt tgtggtaatg aaagggcaga ttgctcgcat gcaccgcgca ctgtcgcagt
    60841 ttatgctgga tctgcatacc gaacagcatg gctacagtga gaactatgtt ccgtacctgg
    60901 ttaaccagga cacgctgtac ggtacgggtc agctgccgaa atttgctggc gatctgttcc
    60961 atactcgtcc gctggaagaa gaagcagaca ccagtaacta tgcgctgatc ccaacggcag
    61021 aagttccgct gactaacctg gtgcgcggtg aaatcatcga tgaagatgat ctgccaatta
    61081 agatgaccgc ccacacccca tgcttccgtt ctgaagccgg ttcatatggt cgtgacaccc
    61141 gtggtctgat ccgtatgcac cagttcgaca aagttgaaat ggtgcagatc gtgcgcccgg
    61201 aagactcaat ggcggcgctg gaagagatga ctggtcatgc agaaaaagtc ctgcagctgc
    61261 tgggcctgcc gtaccgtaaa atcatccttt gtaccggcga catgggcttt ggcgcttgca
    61321 aaacctatga cctggaagta tggatcccgg cacagaacac ctaccgtgag atctcttcct
    61381 gctccaacgt ttgggatttc caggcacgtc gtatgcaggc acgttgccgc agcaagtcgg
    61441 acaagaaaac ccgtctggtt cataccctga acggttctgg tctggctgtt ggtcgtacgc
    61501 tggttgcagt aatggaaaac tatcagcagg ctgatggtcg tattgaagta ccagaagttc
    61561 tgcgtccgta tatgaacgga ctggaatata ttggctaata cccaattttt ctgaatctaa
    61621 aaagcgcctg cgggcgcttt ttttgtctcc ctttgatacc gaacaataat tactcctcac
    61681 ttacacgtaa tactactttc gagtgaaaat ctacctatct ctttgatttt caaattattc
    61741 tatgtataca agcctatata gcgagctgct atagaaataa ttacacaata cggtttgtta
    61801 ctggaatcaa tcgtgagcaa gcttgagtga gccattatga aaacgaaaat ccctgatgcg
    61861 gtattggctg ctgaggtgag tcgccgtggt ttggtaaaaa cgacagcgat cggcggcctg
    61921 gcaatggcca gcagcgcatt aacattacct tttagtcgga ttgcgcacgc tgtcgatagc
    61981 gccattccaa caaaatcaga cgaaaaggtt atctggagcg cctgtacagt taactgtggt
    62041 agtcgctgcc cgctacgtat gcacgtcgtg gacggtgaaa tcaaatatgt cgaaacggac
    62101 aataccggcg atgacaatta cgacggcctg cactaggttc gcgcctgcct gcgtgggcgt
    62161 tccatgcgtc gccgtgtcta caatccggac cgcctgaaat atccgatgaa acgagtcggg
    62221 gcgcgcggtg aaggcaaatt cgagcgcatt agctgggaag aagcctacga catcatcgcg
    62281 accaatatgc agcgcctgat caaagagtac ggcaacgagt ctatctatct gaactatggc
    62341 accggtacgc tgggcggcac catgacccgc tcctggccgc cgggaaatac cctggtcgcg
    62401 cggctgatga actgctgcgg cggctatctg aaccattacg gcgactactc ctccgcgcaa
    62461 attgcggaag gtttgaacta tacctacggc ggctgggcag atggcaacag cccgtcggat
    62521 atcgaaaaca gtaagctggt agtgctgttt ggtaataacc ctggcgaaac gcgaatgagt
    62581 ggcagtgggg tgacttacta tcttgaacag gcacgccaga aatctaatgc ccgcatgatc
    62641 atcatcgatc cgcgctatac cgacaccggt gccgggcgcg aagatgagtg gatccctatt
    62701 cgtccgggaa cagatgccgc actggttaac ggtctggcgt acgtcatgat cactgaaaac
    62761 ctggtggatc aggcattcct cgataaatat tgcgttggct acgatgagaa aaccctgcca
    62821 gccagtgcgc cgaaaaatgg ccactataaa gcttatattc tgggtgaagg gccagatggc
    62881 gtggctaaaa caccggaatg ggcctcacaa atcaccggtg ttccggcaga caaaatcatc
    62941 aaactggctc gtgaaatcgg cagtaccaaa ccggcgttta tcagccaggg atggggcccg
    63001 cagcgtcacg ctaacggtga aatcgcaacc cgtgctatct cgatgctggc gattctgacc
    63061 ggtaacgttg gtattaacgg aggcaacagc ggcgcgcgtg aaggttcata cagcttaccg
    63121 tttgtccgta tgccgacctt ggaaaacccg atccagacca gcatttcgat gtttatgtgg
    63181 accgatgcca ttgaacgtgg cccggaaatg acggcgctgc gtgatggtgt acgcgggaaa
    63241 gataagctgg atgtgccgat caaaatgatc tggaactatg ccggtaactg cctgattaac
    63301 cagcattctg aaatcaaccg tacccatgaa atccttcagg atgataagaa gtgcgagctg
    63361 attgtggtta tcgactgcca catgacctca tcggcgaaat atgctgacat cctgctgcct
    63421 gactgcaccg cttccgaaca gatggacttt gcgctgaatg catcctgcgg gaatatgtct
    63481 tacgtgattt tcaacgatca ggtgattaaa ccgcgctttg aatgtaagac catctatgaa
    63541 atgaccagcg aactggcaaa acgtcttggc gttgagcaac agtttactga aggccgtaca
    63601 caggaagagt ggatgcggca tctgtatgcc cagtcgcggg aagcgattcc tgaactacca
    63661 acgtttgaag agttccgcaa gcaggggatc tttaaaaagc gcgacccaca agggcaccac
    63721 gttgcttata aagctttccg tgaagatcct caggcaaatt cactgaccac gccatcgggc
    63781 aaaattgaga tttattcgca ggcgctggct gacattgccg ctacctggga attgccagaa
    63841 ggagatgtga tcgatccact gccgatctac acgccgggct ttgaaagtta tcaggatccg
    63901 ttgaacaaac agtatccgct gcagcttacg ggtttccact ataaatctcg cgttcactca
    63961 acttacggcg acgttgatgt gctgaaagca gcttgccgtc aggaaatgtg gatcaacccg
    64021 cttgatgcgc aaaaacgcgg tatcaacaac ggcgataaag tcaggatctt taacgatctt
    64081 ggtgaggttc atattgaggc gaaagtgacg ccacgaatga tgccgggtgt ggtcgcactg
    64141 ggtgaaggtg cctggtatga cccggataca aaacgtgtcg ataagggcgg ttgtatcaac
    64201 gtactgacca ctcaacgtcc gtctcctctc gctaagggga atccgtcaca tacaaacctt
    64261 gttcaggttg aaaaggtgta aggagtaacc gatgacaacc cagtatggat tttttattga
    64321 ttccagccgt tgcaccggtt gcaaaacctg cgagctggcc tgtaaagact acaaagattt
    64381 gacgccagaa gtcagcttcc gccgcattta tgaatatgct ggcggcgact ggcaggaaga
    64441 taacggtgtc tggcaccaga acgtgtttgc ctactatctg tcgatttcat gtaaccactg
    64501 cgaagatccg gcttgtacta aagtctgccc gagcggtgcg atgcataaac gtgaagatgg
    64561 ttttgttgtg gtcgatgaag atgtgtgcat tggctgccgc tactgccata tggcttgccc
    64621 gtatggcg
//
LOCUS       DAJVUY010000006        47217 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.006, whole genome shotgun sequence.
ACCESSION   DAJVUY010000006 DAJVUY010000000
VERSION     DAJVUY010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 47217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.006"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            27..764
                     /locus_tag="OQQ72_000374"
     CDS             27..764
                     /locus_tag="OQQ72_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS2010224.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLTNTSQESWLINSKINRPTRWAGGKASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ72_000375"
     CDS             875..1885
                     /gene="pyrD"
                     /locus_tag="OQQ72_000375"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HCS2010225.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ72_000376"
     CDS             2059..2601
                     /gene="zapC"
                     /locus_tag="OQQ72_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HCS2010226.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNVLVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ72_000377"
     CDS             complement(2598..3707)
                     /gene="ycbX"
                     /locus_tag="OQQ72_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HCS2010227.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ72_000378"
     CDS             3951..6059
                     /gene="rlmKL"
                     /locus_tag="OQQ72_000378"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HCS2010228.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGALSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            6071..7978
                     /locus_tag="OQQ72_000379"
     CDS             6071..7978
                     /locus_tag="OQQ72_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2010229.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLSYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ72_000380"
     CDS             8108..9361
                     /gene="pqiA"
                     /locus_tag="OQQ72_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HCS2010230.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ72_000381"
     CDS             9366..11006
                     /gene="pqiB"
                     /locus_tag="OQQ72_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HCS2010231.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ72_000382"
     CDS             11003..11566
                     /gene="pqiC"
                     /locus_tag="OQQ72_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HCS2010232.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
     gene            11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ72_000383"
     CDS             11822..11989
                     /gene="rmf"
                     /locus_tag="OQQ72_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HCS2010233.1"
                     /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW
                     REAMADRVVMA"
     gene            complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ72_000384"
     CDS             complement(12059..12577)
                     /gene="fabA"
                     /locus_tag="OQQ72_000384"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HCS2010234.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(12646..14406)
                     /locus_tag="OQQ72_000385"
     CDS             complement(12646..14406)
                     /locus_tag="OQQ72_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HCS2010235.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            14592..15044
                     /gene="matP"
                     /locus_tag="OQQ72_000386"
     CDS             14592..15044
                     /gene="matP"
                     /locus_tag="OQQ72_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HCS2010236.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ72_000387"
     CDS             complement(15120..16160)
                     /gene="ompA"
                     /locus_tag="OQQ72_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HCS2010237.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ72_000388"
     CDS             complement(16517..17026)
                     /gene="sulA"
                     /locus_tag="OQQ72_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HCS2010238.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ72_000389"
     CDS             17245..17874
                     /gene="sxy"
                     /locus_tag="OQQ72_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HCS2010239.1"
                     /translation="MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYS
                     LDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
                     SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE"
     gene            complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ72_000390"
     CDS             complement(17837..19999)
                     /gene="yccS"
                     /locus_tag="OQQ72_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HCS2010240.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(20009..20455)
                     /locus_tag="OQQ72_000391"
     CDS             complement(20009..20455)
                     /locus_tag="OQQ72_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HCS2010241.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            20578..22632
                     /gene="helD"
                     /locus_tag="OQQ72_000392"
     CDS             20578..22632
                     /gene="helD"
                     /locus_tag="OQQ72_000392"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HCS2010242.1"
                     /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ72_000393"
     CDS             complement(22664..23122)
                     /gene="mgsA"
                     /locus_tag="OQQ72_000393"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HCS2010243.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(23218..23880)
                     /locus_tag="OQQ72_000394"
     CDS             complement(23218..23880)
                     /locus_tag="OQQ72_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HCS2010244.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            24053..24466
                     /locus_tag="OQQ72_000395"
     CDS             24053..24466
                     /locus_tag="OQQ72_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HCS2010245.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ72_000396"
     CDS             complement(24511..24828)
                     /gene="hspQ"
                     /locus_tag="OQQ72_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HCS2010246.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ72_000397"
     CDS             complement(24886..26076)
                     /gene="rlmI"
                     /locus_tag="OQQ72_000397"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HCS2010247.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ72_000398"
     CDS             26171..26449
                     /gene="yccX"
                     /locus_tag="OQQ72_000398"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HCS2010248.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ72_000399"
     CDS             complement(26446..26775)
                     /gene="tusE"
                     /locus_tag="OQQ72_000399"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HCS2010249.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ72_000400"
     CDS             complement(26866..27525)
                     /gene="yccA"
                     /locus_tag="OQQ72_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HCS2010250.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(27732..27819)
                     /locus_tag="OQQ72_000401"
     tRNA            complement(27732..27819)
                     /locus_tag="OQQ72_000401"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(27783..27785),aa:Ser,seq:tga)
     gene            28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ72_000402"
     CDS             28246..29364
                     /gene="hyaA"
                     /locus_tag="OQQ72_000402"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HCS2010251.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ72_000403"
     CDS             29361..31154
                     /gene="hyaB"
                     /locus_tag="OQQ72_000403"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HCS2010252.1"
                     /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP
                     GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK
                     IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI
                     PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV
                     LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ
                     ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG
                     RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP
                     RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELISVQVR"
     gene            31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ72_000404"
     CDS             31173..31880
                     /gene="hyaC"
                     /locus_tag="OQQ72_000404"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HCS2010253.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDGTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            31877..32464
                     /locus_tag="OQQ72_000405"
     CDS             31877..32464
                     /locus_tag="OQQ72_000405"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HCS2010254.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QLANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ72_000406"
     CDS             32461..32859
                     /gene="hyaE"
                     /locus_tag="OQQ72_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HCS2010255.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            32856..33713
                     /locus_tag="OQQ72_000407"
     CDS             32856..33713
                     /locus_tag="OQQ72_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HCS2010256.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            33847..35391
                     /gene="appC"
                     /locus_tag="OQQ72_000408"
     CDS             33847..35391
                     /gene="appC"
                     /locus_tag="OQQ72_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HCS2010257.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            35403..36539
                     /gene="appB"
                     /locus_tag="OQQ72_000409"
     CDS             35403..36539
                     /gene="appB"
                     /locus_tag="OQQ72_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS2010258.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLSSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ72_000410"
     CDS             36552..36644
                     /gene="cbdX"
                     /locus_tag="OQQ72_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HCS2010259.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            36724..38022
                     /gene="appA"
                     /locus_tag="OQQ72_000411"
     CDS             36724..38022
                     /gene="appA"
                     /locus_tag="OQQ72_000411"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acid phosphatase/4-phytase"
                     /protein_id="HCS2010260.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ72_000412"
     CDS             complement(38137..40317)
                     /gene="etk"
                     /locus_tag="OQQ72_000412"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HCS2010261.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ72_000413"
                     /gene_synonym="yccY"
     CDS             complement(40337..40783)
                     /gene="etp"
                     /locus_tag="OQQ72_000413"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HCS2010262.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(40771..41910)
                     /locus_tag="OQQ72_000414"
     CDS             complement(40771..41910)
                     /locus_tag="OQQ72_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HCS2010263.1"
                     /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTRNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(41956..44052)
                     /locus_tag="OQQ72_000415"
     CDS             complement(41956..44052)
                     /locus_tag="OQQ72_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS2010264.1"
                     /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVNDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(44052..44798)
                     /locus_tag="OQQ72_000416"
     CDS             complement(44052..44798)
                     /locus_tag="OQQ72_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS2010265.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVDPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ72_000417"
     CDS             complement(44795..45439)
                     /gene="gfcB"
                     /locus_tag="OQQ72_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein GfcB"
                     /protein_id="HCS2010266.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(45546..45851)
                     /locus_tag="OQQ72_000418"
     CDS             complement(45546..45851)
                     /locus_tag="OQQ72_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HCS2010267.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ72_000419"
     CDS             complement(46293..46505)
                     /gene="cspH"
                     /locus_tag="OQQ72_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HCS2010268.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ72_000420"
     CDS             46791..47003
                     /gene="cspG"
                     /locus_tag="OQQ72_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HCS2010269.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            47014..47202
                     /locus_tag="OQQ72_000421"
     CDS             47014..47202
                     /locus_tag="OQQ72_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS2010270.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVTLQIRTDHAPLDFTK"
BASE COUNT        11625 a        11730 c        12414 g        11448 t
ORIGIN      
        1 tagcgatgtg cagtcgggta aagtgaatgc cagcgcgaca tttgtacttc attatgacta
       61 atacgtggaa cagattggcg ctcttgattt tcgccgtttt atcgctgctg gtggcgggtg
      121 aattgcgggc aggagtggtg gtcggcggaa cgcgatttat ctttccggca gacagagaat
      181 cgatatctat tttactgact aataccagtc aggaatcctg gctgattaac agtaaaatca
      241 accgcccaac gcgttgggcc ggggggaaag cgtcgacagt gccagcacca ttactggccg
      301 ctccgccact tattctcctg aagcccggta ctacaggcac gttgcgcttg ctgagaacgg
      361 aaagcgacat cttgcctgtg gatcgcgaaa cgctatttga gttaagcatt gccagcgtgc
      421 catccggcaa agttgaaaat cagagcgtaa aagtggcgat gcgctcggta tttaaactgt
      481 tctggcgacc cgaaggtttg ccgggcgacc cgctggaagc ttatcaacaa ttacgctgga
      541 cacggaattc gcagggtgta caactcacta acccaacgcc ttactacatt aacctgattc
      601 aggtgagcgt aaatggtaaa gcgttaagta atgcgggagt tgtgccgcct aaaagccagc
      661 gtcagacaag ctggtgtcag gcaatcgcac cgtgtcatgt cgcctggcgg gcgataaatg
      721 attacgacgg gttgagtgca aagaaggagc aaaatctgcc ctgaaacagg ttcggaaaac
      781 gtttgcgttt tttttgccgc aggtcaattc ccttttggtc cgaactcgca cataatacgt
      841 ccccggtttg cacaccggga atccaggaga gttcatgtac taccccttcg ttcgtaaagc
      901 ccttttccag ctcgatccag agcgcgctca tgagtttact tttcagcaat tacgccgtat
      961 tacaggaacg ccgtttgaag cactggtgcg gcagaaagtg cctgcgaaac ctgttaactg
     1021 catgggcctg acgtttaaaa atccgcttgg tctggcagcc ggtcttgata aagacgggga
     1081 gtgcattgac gcgttaggcg cgatgggatt tggatcgatc gagatcggta ccgtcacgcc
     1141 acgtccacag ccaggtaatg acaagccgcg tctctttcgt ctggtagatg ccgaaggttt
     1201 gatcaaccgt atgggcttta ataatcttgg cgttgataac ctcgtagaga acgtaaaaaa
     1261 ggcccattat gacggcgtcc tgggtattaa catcggcaaa aataaagata cgccagtgga
     1321 gcagggcaaa gatgactatc tgatttgtat ggaaaaaatc tatgcctatg cgggatatat
     1381 cgccatcaat atttcatcgc cgaatacccc aggattacgc acgctgcaat atggtgaagc
     1441 gctggatgat ctcttaaccg cgattaaaaa taagcaaaat gatttgcaag cgatgcacca
     1501 taaatatgtg ccgatcgcag tgaagatcgc gccggatctt tctgaagaag aattgatcca
     1561 ggttgccgat agtttagttc gccataatat tgatggcgtt attgcaacca ataccacact
     1621 cgatcgttct cttgttcagg gaatgaaaaa ttgcgatcaa accggtggct taagtggtcg
     1681 tccgcttcag ttaaaaagca ccgaaattat tcgccgcttg tcactggaat taaacggtcg
     1741 cttaccgatc atcggtgttg gcggcatcga ctcggttatc gctgcgcgtg aaaagattgc
     1801 tgcgggtgcc tcactggtgc aaatttattc tggttttatt tttaaaggtc cgccgctgat
     1861 taaagaaatc gttacccata tctaattatt tcttcgaatt cctctttata agataatcag
     1921 ggctttattt tcagccctgg ttgttttata ttcatcgctg ttgcttattt agacattttg
     1981 tacttttatt gttgaggtta ttaagcgaag cgacaatgga ttgtgttgct gcggttttat
     2041 agggtagggg agaggcagat gcgaattaaa ccagacgata actggcgttg gtattacgat
     2101 gaagagcacg atcgaatgat gctcgattta gccaatggta tgctatttcg ctcacgtttt
     2161 gcgcgcaaga tgttgactcc agatgccttt tctcccgcag gcttttgcgt tgacgacgcc
     2221 gcgctctatt tctcttttga agaaaagtgc cgcgatttta atttatctaa agaacaaaaa
     2281 gccgaactgg tgctgaatgt actggtagca attcgctatc tcaaaccgca aatgccgaaa
     2341 agctggcatt ttgtttccca tggtgaaatg tgggtgccca tgccgggcga tgcggcctgc
     2401 gtttggttga gcgatactca cgagcaggtc aatttgctgg tcgttgaatc tggcgaaaat
     2461 gccgcactat gcctgctggc acaaccctgc gttgttattg cgggtcgcgc gatgcagttg
     2521 ggcgacgcca ttaaaatcat gaacgacagg ctgaaaccgc aggttaatgt tgacagcttc
     2581 agcctcgaac aggcagtcta acgcgccaac ttaagtgcag tcttcggtac acagctacag
     2641 caaagaatgg tgccatcatc gcccattgct gattttttca gcggcgagac ttcgccttct
     2701 aaaatctgaa cacggcaact tccacaaatg cccgcgcggc aagaataagg gatacgaatt
     2761 ccctgatttt ctaattgctc cagcaacacc tgttggttat ttccacgaaa tgcctgtccc
     2821 tgccagtcaa tatctacatt tgcgtccggt tgttgcgtga tgttggcggt atcatcagcg
     2881 gcagctgcgc cgtaaatttt tgccggagcc gttgccagaa tttccacctc atcgccaacg
     2941 cgaatcacgc cgctattacg ggcaattaaa ttctgaccaa aatcgacatc gccgttatcc
     3001 tgggcagtgc ggaaagattg caatgttttt aatggttcgc ctgccggatg tttttgccct
     3061 ttttctgggc tgacggtggt gaaaatacag cggctacaag gtttaaccac atcaaacacc
     3121 acatcaccaa tgcgaatcac tttccagcga tcttcttccc aggctgacgc gccggaaacc
     3181 accagattgg ggcggaattg ctccattttt acactggccg gacaacgttg ttggagatca
     3241 cgtaacgagg cttcgttagc aagaaggtaa ggatagccat cagcaaatga cagaggtaca
     3301 gtgttgtggc gtttcacgcg ccgggtcatt tgtggcccca cccagcgtaa ttgcacttcg
     3361 cgggagaaaa atccacttag ccatttgttg atcgcgtctg gcgcaattcg cgcggtaaaa
     3421 tgtgtgcccc aaacttcggt tggtgcgtct tgtgtggcga aatcagcaaa acgaacatat
     3481 gcgctactgc catctggtgc ggtgagatgc aagccatcat gcacaggtga aggagtaaac
     3541 cgtaccatct ggggaaactg gcgagcggta ataaacgtac cgtcaggttc cgtgatcata
     3601 aagatgcgat cgaaggccag accactgaca tcagccagag catgtgtaag accaatgccg
     3661 cgcatcgatt taacaggatg aataaaaagc cgggttaatg tcgccacggt gcggtcctca
     3721 aatgaaaata agccctcaac tttatgacat gacgcgctta ttagctataa tgcgcaacaa
     3781 ttttcttagc gcctgtccca ttaggctatt ttatttgtca gtttggccct gggttgtgct
     3841 cgaaatcctc acgtacttgt gtacgctccg gtttctccgc gctgtccatg tccagactga
     3901 ctgcaacaat tacgcctact gcggtaggct cttagagtaa aagtgacgat atgaattctc
     3961 tgtttgccag tacggcccgt gggctggaag agctgttaaa aactgaactg gaaaacctgg
     4021 gggccgttga atgccaggtg gttcagggtg gggtccattt caagggcgac acacggcttg
     4081 tttaccagag cctgatgtgg agccgcctgg cctcgcgtat tatgttgccg ctgggcgagt
     4141 gtaaggttta cagcgattta gacctctatc tcggtgttca ggcgatcaac tggacagaga
     4201 tgtttaatcc tggcgcgacc ttcgctgtcc acttcagtgg tttgaatgac accatccgca
     4261 acagtcagta cggcgcgatg aaagtgaaag acgcgatcgt cgatgctttc acgcggaaaa
     4321 atctgccgcg tccaaatgtt gatcgcgatg cgccggatat ccgcgttaac gtctggctgc
     4381 ataaagaaac cgccagtatc gctcttgatc tgagtggtga tggtttacat ctgcgtggct
     4441 atcgcgatcg tgctggtatt gcgccgatca aagaaaccct ggcagccgct attgtgatgc
     4501 gatccggctg gcagcctgga acaccgctgc tcgatccgat gtgtggttcc ggtacgttgc
     4561 tgattgaagc ggcgatgctg gcgaccgatc gcgcacccgg cttgcaccgt gggcgttggg
     4621 gctttagcgg ctgggcgcag catgatgaag ctatctggca ggaagtgaaa gcggaagcgc
     4681 aaactcgcgc ccgtaaaggc ctggctgagt atagctctca tttttacggt tcggacagcg
     4741 acgcacgggt gattcaacgt gcacgcacta acgcccgtct tgcggggatt ggtgaactga
     4801 tcacctttga ggtgaaagat gtcgcgcaac tgaccaatcc gctgccgaaa gggccgtacg
     4861 gcacagtgtt gagcaacccg ccatacgggg aacgtctgga cagcgaaccg gcgctgattg
     4921 cgctgcatag cctgctgggt cggatcatga aaaaccagtt tggtggctgg aatctctctt
     4981 tgtttagtgc ctcgccggat ctgctaagct gcttgcagct gcgtgcagac aaacagtaca
     5041 aggcgaaaaa cggcccgctg gactgcgtac agaaaaatta ccacgttgcc gaaagcactc
     5101 cagacagcaa accggcgatg gtagcggaag actacgccaa ccgcctgcgt aagaacctca
     5161 aaaaattcga gaagtgggct cgccaggaag gaattgaatg ttaccgcctg tatgacgccg
     5221 atctgccgga atataacgtt gccgttgacc gttattccga ctgggtggtg gtgcaggagt
     5281 atgcaccgcc aaaaactatt gatgctcaca aagcgcgtca gcgtctgttc gatattatcg
     5341 ctgcaaccat ttcggtactg gggattgcgc caaacaaact ggtgctgaaa acccgtgaac
     5401 gccagaaggg caaaaaccag taccagaaac tgggcgagaa gggcgagttt cttgaagtta
     5461 ccgaatataa cgctcacttg tgggtgaacc tgacggatta tctcgatact ggtctgttcc
     5521 tcgatcaccg tatcgcccgc cgtatgctcg gtcagatgag caaaggcaaa gatttcctca
     5581 acctgttctc ttataccggt agcgccaccg tgcatgcggg attaggcggc gcgctcagca
     5641 ccaccaccgt ggatatgtcg cgtacttatc tggagtgggc agaacgcaac ctgcgtctga
     5701 atggcctaac cgggcgtgcg catcgcctga ttcaggccga ttgcctggcg tggctgcgtg
     5761 aggcaaatga acagtttgat ctgatcttta tcgatccgcc aaccttctct aactcaaaac
     5821 gaatggaaga tgcgtttgat gttcagcgcg atcatctggc gctgatgaaa gatttgaaac
     5881 gtctgctgcg tgcaggtggg acgatcatgt tctcgaacaa caaacgtggc ttccgtatgg
     5941 atctcgacgg cctggcaaaa ctgggactga aagcacaaga aattacgcaa aaaacgctct
     6001 cccaggattt cgcccgtaac cgccagatcc acaactgctg gctgattacc gcagcctgaa
     6061 aggaatagta atgtcattaa tcagtatgca tggcgcatgg ctgtcgttca gcgacgcgcc
     6121 gcttctcgat aacgcagaac tgcatatcga agataacgaa cgtgtttgtc tggtgggccg
     6181 caacggcgcg ggcaaatcga cgttaatgaa aatcctcaac cgtgaacaag ggctggatga
     6241 cggtcgcatt atttacgagc aagatttgat tgtagctcgt ctgcaacagg atccgccgcg
     6301 taacgttgag ggtagcgttt atgatttcgt tgccgaaggc attgaagaac aagcggaata
     6361 tctgaaacgc tatcacgata tttcgcgcct ggtgatgaac gacccgagcg agaaaaatct
     6421 caacgaactg gcgaaggttc aggaacagtt ggatcaccac aacctgtggc agctggaaaa
     6481 ccgcatcaac gaagtgctgg cgcaactggg gttagatcct aatgttgcgc tgtcgtcgct
     6541 ttccggcggc tggttgcgta aagcggcatt aggacgcgcg ctggtgagta atccgcgcgt
     6601 gctgttgctt gatgaaccga caaaccacct ggatattgaa accatcgact ggctggaagg
     6661 gttccttaaa accttcaatg ggacgattat tttcatctcc cacgaccgtt cgtttatccg
     6721 caatatggcg acgcgcattg ttgatctcga tcgcggcaag ctggtgacct atccagggaa
     6781 ttacgaccag tacctgcttg aaaaagaaga agccctgcgc gtggaagaac tacaaaatgc
     6841 cgagttcgat cgcaaactgg cgcaggaaga ggtgtggatc cgccagggga tcaaagcacg
     6901 ccgtacccgt aatgaaggcc gcgtacgcgc cctgaaagca atgcgtcgcg agcgtggtga
     6961 acgtcgcgaa gtgatgggta ccgcaaagat gcaggtggaa gaggccagcc gctccggtaa
     7021 gatcgttttc gaaatggaag acgtttgcta ccaggttgac ggtaagcaac tggtgaaaga
     7081 tttttcggcc caggttctac gtggcgacaa aattgtcctg attggtccga atgggtgcgg
     7141 caaaaccacg ctgctgaaac tgatgctcgg tcagcttcaa gcggacagcg ggcgtattca
     7201 cgttggcacc aaactggaag tggcttattt cgatcagcac cgcgcggaac tggatcccga
     7261 taaaacggtg atggataaca ttgccgaagg taagcaagag gtgatggtta acggcaagcc
     7321 acgccacgta ttgagctatt tgcaggactt tctgttccat ccgaaacggg cgatgacgcc
     7381 ggtacgtgcg ctttctggcg gtgagcggaa ccgcttgctg ctggcgcgtt tgttcctcaa
     7441 accaagcaac ttattgattc ttgacgaacc gaccaacgat cttgatgtcg aaacgctgga
     7501 actgctggaa gaactgatcg acagctatca gggcacggta ttgctggtta gccacgatcg
     7561 tcagtttgtc gataacaccg ttacagaatg ttggatcttc gaaggcggcg gtaaaattgg
     7621 tcgttatgtc ggcggttatc atgatgcccg tggtcagcaa gagcagtatg tggcgctcaa
     7681 acagcctgcg gtgaaaaaaa ccgaagaagc cgccgcggca aaagcagaaa ctgtaaaacg
     7741 cagcagtagc aaactaagct ataaattgca gcgcgaactg gagcagctac cgcaattgct
     7801 cgaagatctg gaggcgaagc tggaagccct acagacgcag gtggcggatg cttccttctt
     7861 cagtcagcca catgagcaga cacaaaaagt gctcgccgat atggctgctg cagagcagga
     7921 gctggagcaa gcctttgaac gctgggagta tcttgaagcg ttaaaaaatg gtggctgatc
     7981 gcaaaatagt cgatttaaac agagacagct gacaacggta aaattgcctg atgaactggg
     8041 tttatcaggc atgaaaacca acactttgtt agtcatctgt aaaatagcgc atcattaagg
     8101 agtaccaatg tgcgaacatc atcatgccgc gaagcacatc ctgtgctcgc agtgtgacat
     8161 gctggtggcg ttaccgcgcc ttgagcatgg tcagaaagcg gcatgtcccc ggtgtggcac
     8221 aacgttaacc gtggcgtggg atgcccctcg gcagcgtccg accgcctatg cgttggctgc
     8281 actgttcatg ctgttgctgt ccaacttgtt tccttttgtg aatatgaacg ttgcaggagt
     8341 taccagtgaa attacattac tggaaattcc cggcgtgctt ttttctgagg actacgccag
     8401 cctcggcacc tttttcctgt tgtttgtgca actggttccc gcgttttgtc tgataaccat
     8461 tctgttactg gtgaatcgcg cggaattacc ggtccgttta aaagagcaac tggcacgggt
     8521 gctttttcaa ctcaaaacct ggggaatggc ggagattttc ctcgcgggtg tgctggtcag
     8581 tttcgttaaa ctgatggctt acggcagcat tggggtaggc agcagctttc tcccctggtg
     8641 tttattttgt gtcctgcaac tgcgcgcttt tcagtgcgtt gatcgtcgct ggttatggga
     8701 cgacatcgcc ccgatgccag aactgcgcca gccgctaaaa ccaggcgtca cggggatacg
     8761 tcaggggctg cgttcgtgct cctgttgtac ggcaatcctt cctgctgatg aacccgtgtg
     8821 cccgcgttgt agtaccaaag ggtacgttcg gcgtagaaac agcctgcagt ggacactcgc
     8881 gctgcttgta acgtccatca tgctgtatct tccggctaat attttgccca tcatggtgac
     8941 ggatttatta ggctcgaaga tgccgtcgac gattctcgct ggggtcattc tgttatggag
     9001 cgaaggctct tatcccgtcg ctgcggtgat ctttctggcc agtattatgg tgccaacgtt
     9061 aaagatgatc gccatcgcgt ggctgtgttg ggatgccaaa gggcatggca agcgcgacag
     9121 tgaaagaatg catttgattt atgaagttgt tgagtttgta ggccgctggt cgatgattga
     9181 cgttttcgtt atcgcggtgc tctcggcgct ggtgcgtatg ggaggtttaa tgagtattta
     9241 tccggcaatg ggtgcattaa tgtttgcttt agtcgtcata atgacaatgt tttctgctat
     9301 gacgtttgac ccgcgtttgt cgtgggatcg tcaacctgaa tcagagcatg aggagtcctg
     9361 acagtatgga atctaataat ggggaagcca aaatccagaa agtgaagaac tggtctcccg
     9421 tgtggatatt tcctatcgtc acggcgctca ttggggcctg ggttctattt tatcattaca
     9481 gccatcaggg accggaagtg accctgatca ccgcgaatgc ggaaggaatt gaaggtggca
     9541 aaaccaccat taaaagccgt agcgttgacg tcggcgtggt tgaaagcgcc acactggctg
     9601 atgatttgac gcacgttgaa atcaaagcgc ggctgaattc cggtatggaa aaattgctgc
     9661 ataaagacac cgtcttttgg gtggtgaaac cgcagattgg tcgcgaaggg attagcggcc
     9721 tgggaacgct gctgtctgga gtttatatcg aactgcagcc aggcgcgaaa ggcagcaaaa
     9781 tggataaata cgatttgctg gactcgccac cgttggcccc gcctgatgcg aaaggtatcc
     9841 gtgtgattct cgatagcaaa aaagccgggc agctctcgcc aggagatccg gtgctgttcc
     9901 gtggctatcg ggtaggttcg gttgaaacca gcaccttcga tacgcaaaaa cgcaatatca
     9961 gttatcaact gttcatcaat gcaccttatg accgactggt gaccagcaat gttcgcttct
    10021 ggaaagatag tggcattgcg gttgatctga cgtcagcggg gatgcgtgtg gagatgggct
    10081 cattgacaac gctgcttagt ggcggtgtta gctttgatgt gccggaaggt ctggatttag
    10141 ggcagccagt ggcaccgaaa acagctttcg ttttgtatga tgatcagaag agcattcagg
    10201 attcgttgta caccgatcac attgattatc tgatgttctt taaagattcg gtacgcggtc
    10261 tgcaaccggg agctccggta gaattccggg gtattcgcct gggtaccgta agcaaagtgc
    10321 cattctttgc gccgaatatg cgtcagacat ttaacgatga ttaccgtatt ccggtactga
    10381 ttcgtatcga gccagagcgg ctgaaaatgc agcttggcga aaatacggat gttgttgagc
    10441 accttggcga attgttgaaa cgtggtttac gcggatcgct gaaaaccgga aacctggtca
    10501 ctggtgcact gtatgttgat ctcgatttct atccaaatac gcctgcaata accggtattc
    10561 gtgaatttaa tggttatcag attatcccga ctgttagcgg cggcctggcg caaatccagc
    10621 aacgactgat ggaagcgttg gataagatca acaaactgcc attgaatccg atgattgaac
    10681 aggcaaccag tacgctttct gaaagtcagc gcacaatgaa aaacctgcaa acgacgctgg
    10741 atagcatgaa caagatcctc gctagccagt cgatgcagca gttgccgacg gatatgcagt
    10801 caacgttgcg tgaattgaat cgcagcatgc agggcttcca gcctggctcc gcagcctaca
    10861 acaagatggt ggcggatatg cagcgccttg atcaggtgtt gcgagaactg caaccggtgc
    10921 tgaaaacgct caatgagaag agtaacgcgc tggtatttga agcgaaggac aaaaaagatc
    10981 cagagccgaa gagggcgaaa caatgaaaaa gtggctagtg acgattgcag cactgtggct
    11041 ggccggatgc agctccggcg aaattaataa aaactattac cagttacctg tggtgcagag
    11101 cggtacacaa agtaccgcca gccagggcaa tcgtctgtta tgggtagagc aggtcactgt
    11161 tcctgactat ctggcgggga atggtgtggt ttatcaaacc agtgatgtga agtatgtgat
    11221 tgccaacaac aacttgtggg ccagcccgtt ggatcaacag ttgcgcaaca ccctggttgc
    11281 caacctgagt acgcaactgc ccggctgggt ggttgcctcc cagcctctgg gaagcgtcca
    11341 ggacacgctc aatgttaccg taacggagtt taacggtcgc tatgatggca aggtcattgt
    11401 cagtggtgag tggctgttga accaccaggg acaactgatc aaacgtccgt tccgtctgga
    11461 aggagtgcaa actcaggatg gttacgatga gatggttaaa gtgctggccg gtgtctggag
    11521 tcaggaagcc gcttctattg cacaagagat aaagcgtcta ccttaattat aaagatttgt
    11581 aagtataacc gtctccggta tgttgcctga ggcggttttt ttgtttctaa cgtgcggaaa
    11641 aatttgttcc tcttcacatt ttttgtacaa ccgacatgcc cgtgtagctc acaaatatga
    11701 cagtggcgtg aattttgcgc attgacggca gttatgattc gcggtattgc ttaactgtga
    11761 ttgcacattt agtaatcact gttttctttt ccaccagaaa ccagtatgag ggaaacgagg
    11821 catgaagaga caaaaacgag atcgcctgga acgggcacat caacgtggtt atcaggccgg
    11881 catcgccgga cgctcaaaag aaatgtgtcc ctatcagacg ctgaatcaaa ggtcacaatg
    11941 gctgggaggc tggcgagaag ccatggcgga cagggtagta atggcctgat tctgtctctt
    12001 taaaaagaaa cctccgcatt gcggaggttt cgccttttga tactctgtct gatgataatc
    12061 agaaggcaga cgtatcctgg aacagaccga ctttcaggtc gctggcggta tagatcagac
    12121 gaccatcaac cagcacttcg ccatctgcca gacccataat cagacgacga ttaacaatgc
    12181 gtttaaagtg aatacggtag gtcacttttt tcgctgtcgg cagtacctga ccagtgaatt
    12241 tcacttcgcc aacgcccagc gcgcggcctt taccttcgcc gcccagccag ccgaggtaga
    12301 accctactag ctgccacatt gcgtccaggc ccaggcatcc cggcataacc ggatcgccaa
    12361 tgaagtggca tccgaagaac cacagatccg gattgatatc cagttctgct tcaacatacc
    12421 ctttgtcgaa gttaccaccc gtttcggtca ttttgaccac acggtccatc atcagcatgt
    12481 tcggtgctgg caattgcggg cctttagcgc caaacagttc accgcgacca gaggcaagaa
    12541 ggtcttcttt tgtataggat tcgcgtttat ctaccatgtt ctctgtaagc cttattttat
    12601 tgaagcacgc aggatagcta acacgtgtac gctgaacaag tccgatcagt tcggaataaa
    12661 ccagttcagc caacgtaatg gccatggaaa acggtgacgt ccttcctgtt gcgatgcttg
    12721 cgcgatacgt tcctggatgg tttgcatcag cgtcgtttgg ccttcgccat cccacaccag
    12781 atttaataat aacggcagtg cgtcagtcac atcgtctact gcccagatgg tgaatttgcc
    12841 ttcttctacc gctttcacca gttcactgtg aagacttaaa tggcgaacgt tagctgtggg
    12901 gataatgaca ccttgtttcc cggttaactc acgttgctgg caaatagcaa agaagccttc
    12961 gattttctca tttaaaccac cgaccggctg ggcgcgaccg aactgatcga ctgaacctgt
    13021 gatagcgata ctctgattca ccggcacatc ggcgagggcg cttatcaggg cgcagagttc
    13081 agccatcgag gcactatctc catcaacttc actgtatgac tgctcaaatg tcagcgatgc
    13141 tgagaagggg atctgttgct caagctgtag ttccgacatc aggaacgctt gcatgatcat
    13201 catccctttc gcatggatat tgccgccaag ttccgctttg cgttcgatgt cggtgaattc
    13261 accatcgcca atatgcacaa cgcagctaat gcgagaaggt tcgccaaaag cgcgtggatg
    13321 acccggaaat tcaatgaccg aaagggcgtt aatttgcccg atgcgttcgc cttcggtttc
    13381 aatcaggatt tgctcctgaa ggatctcatc ctgcatacgt tcagcgagga aaccttcgcg
    13441 ccattcacgc tgctgcagca ttaagtttag ctgctcgccg gagaaggtgt cgccatcaca
    13501 cagggaggcg acctctttac actggcggag gatccactgc gggctaagcg gaagtgtttc
    13561 ttgttcaccg gtgtagcgtg ctgcttcgcg gataagtacc ggccaggcat ccgctcccgg
    13621 ggcaggtaag tgattatgtc tggcggtaaa tgtcacccag cgacaccact ggcttactga
    13681 ctccgcatcg acaatctgca gagtatcttc aaattcgcta taaatagcct gctctgaaag
    13741 ctctggctcc atctcctgga aatcagccaa tgattcgcgt tcgcctacca gaatgacttt
    13801 cagcttcaat ggcatcgaag gcacagagac ggggagaggg cgcgactcat caaacgcaac
    13861 ccagtcaaaa cgctcgcggt taacgatatt tttcagccgc atccacagca gaggttgcgc
    13921 cagcagtgta cgcaaagaga tgatgagaat accgccattt gcctgatgca ccagaccagg
    13981 ctgcagggta atgtcgccat taaactggcg caggcagcca aagagttgct ccgcttctac
    14041 ccagtcggca gcgacaactt gcgttaaagt cgcaaaatta tcatctgcac tcactgcgtg
    14101 acgtaagcgg atggagtggc cggaaacctc atagtgatcg cccaccagtt ggcctgcatc
    14161 gctttgtagc gtacgcgcgg catcggcaat aagattcaga tactcagact cttccggggc
    14221 cttagccagc ataaaagagg aggatgctcg cgtatgcagc aactgctcca gcgcaaattg
    14281 cagccgcggt tgagtatcac tgaataaagg atcgttttcg tcaatcaaat gtggctgagc
    14341 aaatatttcc tgatagctat cggtatcagg aaccaggtca cgccatgcaa gtttcgtaat
    14401 ggtcaaagtt gatgtttttt agtctgttgt caaagccgcg attataccgt aaccggcact
    14461 acagcacacg tagaaagcac cgacaatact cctggcatgg gcgttaaagc tcacaggatg
    14521 gagattcttt tcttcactgg cctaaaaagc tgatattctg taaagagtta cacggtaaca
    14581 ttgagatcgc tatgaaatat caacaacttg aaaatcttga aagcggttgg aaatggaagt
    14641 atctggtgaa gaagcatcgc gaaggggagt taattacccg ttacatagaa gccagtgccg
    14701 cccaggaagc cgtcgatgtg ttgctctcgc tggaaaatga acccgtgctg gtaaatggct
    14761 ggattgacaa gcatatgaat ccggaactgg tcaatcgcat gaagcaaacc attcgggcca
    14821 gacggaagcg ccattttaat gcggaacacc agcatacgcg caaaaagtcg atcgatctgg
    14881 aatttattgt ctggcaacgt ctggctggtc ttgcgcagcg tcgcggtaaa acgctttctg
    14941 aaacgattgt tcagctgatt gaagatgcgg aaaacaaaga gaaatacgcg aataaaatgt
    15001 cttctctgaa gctggatctg caggcattgc tgggtaagga ataactgacg aaagtcagtt
    15061 caatttacta aaggcaaaaa aaaccccgca gcagcggggt ttttctacca gacgataact
    15121 taagcctgcg gctgagttac aacgtctttg atacctttaa cttcgatctc tacgcgacga
    15181 tccggagcca ggcagtcgat cagtgcagca cgctgtttca cgttgtcaca ggtgttgcca
    15241 gtaaccgggt tggattcgcc cataccacgt gcggagatct tgtctgccgg gatacctttg
    15301 gagatcaggt aatcaacaac agactgagca cggcgctcgg acagaccctg gttgtaagcg
    15361 tcagaaccga tgcggtcggt gtaacccaga acaactacgg aaccgtcttt cggatccagg
    15421 ttgctcagct ggctgtacag ctgatccaga gcagcctgac cttccggttt cagggttgct
    15481 ttgttgaagt tgaacagaac gtcagacttc agagtgaagt gcttggtctg tacttccggt
    15541 gccggagctg gagccggagc aactactgga gctgcttcgc cctgaccgaa acggtaggaa
    15601 acacccaagc tcagcatgcc gttgtccgga cgagtgccga tggtgtgtgc gtcaccgatg
    15661 ttgttggtcc actggtattc cagacgggta gcgatttcag gagtgatcgc gtactcaaca
    15721 ccgccagcga agaccggaga aacgccggtg tcgtggtttt taccataaac gttggattta
    15781 gtgtctgcac gccataccat accacccaga cgagtgtaga tgtccaggtc gtcagtgatt
    15841 gggtaaccca gtttagcggt cagttgaacg ccctgagctt tgtatgcacc gttttcaacg
    15901 ctgcctttgt acggcatacg acctaaccag tcgtaaccca tttcaaagcc aacatacggg
    15961 ttaacctggt aaccaccaaa agcaccagcg cccagttggt tttcatgggt cgggccattg
    16021 ttgttgatga aaccagtgtc atggtactgg gaccagccca gtttagcacc agtgtaccag
    16081 gtgttatctt tcggagcggc ctgcgctacg gtagcgaaac cagccagtgc cactgcaatc
    16141 gcgatagctg tctttttcat tttttgcgcc tcgttatcat ccaaaatacg ccatgaatat
    16201 ctccaacgag ataacacggt taaatccttc accgggggat ctgctcaata ttaactctac
    16261 cgatatcttc ggcttatgcc gagcacccct ggcgatgtaa agtctacaac gtagttgaaa
    16321 acttacaagt gtgaactccg tcaggcatat gaaaaaaaag tcttgtataa ggtatgttta
    16381 atcttttttg tcagcgacaa tttacagaag aaaatcgcgg aaaccgcttc agacaagcct
    16441 ccgcaaggaa aattagtcac gactgaaagc attggctggg cgacaaaaaa agttccagga
    16501 ttaatcctaa atttacttaa tgatacaaat tagagtgaat ttttagcccg gaaagttgtc
    16561 tcgtggcgtg agaggatgcg cttaccggac gcataataaa ccccatagcg ttaccttcat
    16621 ttgccgcatc aacaagttca gcatgctctt cttcagtcaa atcatctgcc aaccaaccga
    16681 tcaccacact gtaattgccc gtgcgtaaag cgcgaaccat tgactccaca gtgtggcaag
    16741 gggagagctg gctaatctgc attactttcg ttaagggtag cccagatgcc tgaacccatt
    16801 cccgactcag tttttgttgc ggtgttaacc agagttgcca gcgcgattgc tgaccgagtt
    16861 gctgtaacaa tggcaacagt agaagttgcg tcatcatggg ctgatcttcg cgatagacaa
    16921 cttcactgat aagcccggct gtagtgtttt ccgtagagac acgcgcaatt ttacttgctg
    16981 cggatgagaa cgacgaagaa cgatgtgcat agcctgaagt gtacataatc aatccagccc
    17041 ctgtgagtta ctgtatgaat gtacagtaca tccagtgaca acaaagatca accctatttt
    17101 cggaaagagc ctcgcaaatt ttttcgttgg tgacgggaaa acataaatta atcttgcccc
    17161 ttaagaataa gttgcctatt ttcgtagtta acggatccgt taatgtgaat cattctttta
    17221 tgttatgatt ttaaaaggaa ttttatgaaa agcctctcct ataagcggat ctataaatca
    17281 caagaatacc tggcaatgtt gggcacaatt gaataccgat cattgtttgg cagttacagc
    17341 ctgaccgttg acgacacggt gtttgcgatg gtttctgatg gtgagttgta tcttcgggct
    17401 tgtgagcaaa gtgcacagta ctgtgtaaaa catccgcctg tctggctgac atataaaaag
    17461 tgtggccgat ccgttaccct taattactat cgggttgatg aaagtctatg gcgaaatcaa
    17521 ctgaagctgg tgcgtctgtc gaaatattct ctcgatgcag cgctgaaaga gaaaagcacg
    17581 cgcaataccc gggaaagact gaaagatttg cccaatatgt cttttcatct ggaagcgatt
    17641 ctcggggagg tggggattaa ggatgtacgg gcgttacgta tacttggggc aaaaatgtgt
    17701 tggttgcgac tgcggcagca aaacagtctg gtgacagaaa agattctgtt tatgcttgaa
    17761 ggtgccatta tcggcattca tgaagctgcg ctcccggtgg cacgccgcca ggagcttgca
    17821 gaatgggctg actcacttac gccgaaacag gagtttcctg cggaacttga gtaatctggc
    17881 gttgcagacg accaatctca ggcagtaatg caatcaataa tccaacttgt tgtacgacca
    17941 gaggttcttt gctgtctgcc cgtggttcaa gttgctgcat ccgctgtttc aggctagcta
    18001 atgcctcatt gacgcgttct tcatcagcag gttgatgatg taacgcgtca tcaacatagc
    18061 aaactgcgtc atcaagaaac gccagaattt caggattagt taactgctcc cggtgagcac
    18121 cgagggctga gatatagctg gtaaacgtat ggttaaggca cagcaaccga aacgcggctt
    18181 cgcgaatttg cggggtaacg ttcggctcgc tggacatatt tgataccacc gacgccagct
    18241 cagcatcacg gttgtgtgca tcgcggcggg caatacgata cgccagacgg ttatcacgcc
    18301 cctgatggta ttgctccagt atggcatcga gataccgaca gttggcctct gtggcgcgtt
    18361 cgagcatgcg cggcaaattg cgaaactgcc agtcaggcca gatgtagctc actgccgccc
    18421 acgcaatggc acaaccaatc agcgtatcga ttacgcgagg taacgctact tcaaaacctt
    18481 cacccagtaa gttaaaacac agtagcacca aaagtgtgat gaacatcgtt gcatgagcgt
    18541 attgcacgtt acggaaggca aaaaagagca cgccggtaat aaccagcagc accagctgcc
    18601 cttccagtga tggcacaaac cacagcacag gaatgccaat ggcgatacct accagcgtac
    18661 caataatcct taacttcagg cggtggcgcg tggcgttata gtttggctgg cagacaaaca
    18721 aacttgtcag caagatccaa aacccgtgat gcattccggt tatttgaatg atggcgtagc
    18781 cgaagcacaa caccagcgac attcttaccg catgacggaa gagggcggat tccggcgtga
    18841 agtgacggct aagacgcagc cagatatcac tcaacccgtg cgggctgtca tcagcgagct
    18901 cattttcgtc attattatgg ggtagtgcct gggcctgttc tgattcaatt gttgccagtt
    18961 gggcatcaat ggcgcgtaaa ttgttcagca aaaatcccag tgttttgagt aaatcggcgg
    19021 gtgcgccgtt atcgcgcatc cgctccagcg cagcatcaat atgcgtaaaa gcgcgctcaa
    19081 aatgcggatc atgttgataa ggctgacgca acaaaataca gcgtgacagt tgctggcacg
    19141 cctggccctg catcgacatc agccgctgaa aacggaacag cacgtcgctg tggcgaaaat
    19201 gttcacgcaa tgtttgatac tgaatatgag aagagctggc acgctcgtga atatcctgtg
    19261 cgacaaagta ataatgcagc gtgcgacgcg ttccccgttg accacgatcg ccacgtaagc
    19321 gggtcagcag cgagagtttc gtctgattca atgtcgccat cagcagaccg ttggcgagag
    19381 ccaaatcgta cagcggtgcc tggctttcat cttcaatatc aggatcaaac atgcgcgact
    19441 tgagctcaag ataacgcgcc agttgttcat agcaacgcgc caggttgtcc tgcagcgggc
    19501 ggaccgggaa cagcagatga ccaataagtg tcaggacgtt gtaccagacg gcaccggcca
    19561 gcagatacat cggctgctga taccagtgct catacagtga tgttcccaac atagtgtaaa
    19621 tggcgatcag caatgcaccg aaggcaattg ttgcatagcg ttgacccaga ccgccgagca
    19681 aaatgaagcc gctggtagag agcgttaagc caatcgcaaa tagccagggc cagggaaaca
    19741 gcaattctac tgaggccgag gcgataaaaa agcagaacag cgtaatgatg aggttacgca
    19801 aacgtcccgc cagtcggtca tcgagatcgg tcagcgccgc tgccaccatc cccagcgtta
    19861 gcggaatcgt cagttttaca tcacccagcc accacggaaa cgctgtggtt ccacaaagcg
    19921 caataaaaat acgcgcgtaa tacagccagg cgctgttcca ggtatagcgt ttgagcaaag
    19981 gacttagcat aaaggccata ttagtggatt attcaaaacg acgacgtgca ttggcttcac
    20041 gcgcagcttg cgctgtttct accgatacca cgcgacgacc aaccggccat agtgcaatag
    20101 cggcaatttt aaagttcgca atgccgacag gaatgccaat gattgaaata cattgtgcga
    20161 tgcccgttgc aatgtgcatc aggcataacc accagccaaa gaaaatcagc cagaaaatat
    20221 tcaataccgt accgccagta ttcagcagca catttttgcc agccgggttc agttcatcga
    20281 catgaatagc ttcattgcca taaggcacca gagacagttt agtgatctcc cagcaggatc
    20341 gtgtcagcgg taaggtaaaa atcagcacaa tactgaccag agtcgccaac agccagccca
    20401 gagtggtggc aaatccgcca agcacaaagt tcagaatgtt caaaacggta cgcataaaac
    20461 ctcgctttac tgtggttttc agtaatgggc ggcaattgta acgttttttt gggctggagc
    20521 acgttttctc tgacggttac actgataaga aataatttcg tgtggatcta cagagtcatg
    20581 gaactgaaag cgacaacgct tggaaaacgt ctggcacagc acccttacga tcgggcggtg
    20641 atcctcaatg ccgggattaa agtctccggc gatcgccacg aataccttat tcctttcaat
    20701 caattactgg cgattcactg taagcgtggt ctggtatggg gcgagctgga atttgtactg
    20761 ccggacgaaa aagtggtgcg tctgcacggc accgaatggg gcgagacgca gcgtttttac
    20821 catcatcttg atgctcactg gcggcggtgg agtggcgaga tgagcgaaat tgcgtctggt
    20881 gttttacgcc agcaactgga tttgattgcc acgcgcactg gagaaaataa atggctgacg
    20941 cgtgagcaaa cctctggcgt tcagcaacaa atccgccagg ctttgtcggc gttgccgttg
    21001 ccggttaacc gactggaaga attcgataac tgccgtgagg cgtggcgtaa atgtcaggcc
    21061 tggttgaaag atattgaaag cgctcggttg cagcataacc aggcgtatac cgaagccatg
    21121 cttaccgagt atgcggattt tttccgccag gtcgagtctt caccgctgaa tccggcgcag
    21181 gcccgggcag tcgttaatgg cgagcattct ctgttagtgc tggcaggtgc aggaagcgga
    21241 aaaacgtcgg tgctggtggc ccgtgcaggc tggttgctgg cacgtggtga agcgtcccct
    21301 gagcaaattt tattgctggc gtttggtcgc aaagccgctg aagagatgga cgagcggatt
    21361 cgcgaacggc tacataccga agacattacc gcacgcacgt ttcatgcgct ggcgctgcat
    21421 attattcagc agggcagcaa aaaagttccg atagtcagca aactggaaaa tgataccgct
    21481 gcccgtcatg aactctttat tgctgagtgg cgcaagcaat gcagcgaaaa gaaagcgcag
    21541 gcgaagggct ggcggcaatg gctgacggaa gaaatgcagt ggtcagtgcc agaaggtaac
    21601 ttctgggatg atgaaaaatt acagcgtcgc cttgcctctc gcctcgatcg ctgggtaagt
    21661 ctgatgcgga tgcacggtgg tgcacaggca gaaatgattg ccagtgcacc cgaagagatt
    21721 cgcgatctgt tcagtaaacg tatcaagttg atggccccgt tattaaaagc ctggaaaggt
    21781 gcgctgaagg cagaaaacgc tgtcgatttt tcgggcctta ttcatcaggc gattgtgatt
    21841 ctggagaaag gtcgctttat cagcccgtgg aagcatattc tggttgatga atttcaggat
    21901 atctcgccgc agcgggcagc gttgttagcg gcattacgca agcaaaacag tcagacgacg
    21961 ttgttcgctg ttggtgatga ctggcaggcg atttaccgat tcagcggtgc gcaaatgtcg
    22021 ctcaccaccg ctttccatga aaactttggt gaaggcgaac gttgtgattt agacacgact
    22081 taccgtttta acagtcgtat cggtaaggtg gcaaaccgtt ttattcagca gaacccaggc
    22141 cagctgaaaa agccgctaaa cagcttaacc aatggagaca aaaaagccgt cacgttattg
    22201 gatgagagtc aacttgacgc tttgctggat aagctctctg gttatgccaa accggaagag
    22261 cgcattctga tcctggcgcg ttaccatcac atgaggcctg ccagcctgga aaaagcggca
    22321 acacgctggc cgaagttgca aatcgacttt atgaccattc atgccagcaa agggcaacag
    22381 gcggattacg tcatcatcgt tggcttgcag gagggaagtg atggttttcc ggctgcggcg
    22441 cgggagtcga ttatggaaga ggcgctactg ccaccggttg aggatttccc ggacgctgaa
    22501 gaacggcggt taatgtacgt ggcgctgacc cgggcacgcc atcgggtatg ggcactgttt
    22561 aacaaagaga atccctctcc ctttgttgaa atactgaaaa atctggatgt gccggtggcg
    22621 agaaaaccgt aagaaacagg tggcgtttgc cacctgtgca atattacttc agacggtccg
    22681 cgagataacg ctgataatcg gggatcagaa tatcgaccgc gtcgttgaaa tgcggcgact
    22741 ggattatgaa gtctgccgtt gccacgttgg tggcgaccgg aatgttccat accgtcgcca
    22801 gacgcagcaa ggctttcacg tcaggatcgt gcggcacggc atttagtgga tcccagaaga
    22861 aaatcaatac atcaattttc ccttctgaga tcaatgcgcc aacctgctgg tcacccccca
    22921 ttgggccact caacatcgcg ttgacgttca tgccggtcgc gcgggaaatt aagttaccgg
    22981 tagtgcctgt tgcatacagt acgtgttgtt ccagtaacgg ttgatgccgt tccacccagc
    23041 tcatcagcat ttgtttgcag tgatcgtgtg ccaccagcgc aatatgtttc cgcgcaggta
    23101 aagtgcgagt cgtcagttcc ataatgtaca tccgtagtca actttcctac agattactgt
    23161 aagcacttat cgctgcaaga taaagaccga aaaagcctgc gcacaggcac aaaaatctca
    23221 ggaagatggt tgtttttccg cccactgcag gaaagtattt cgcgtttgtg ggtcagccag
    23281 tttaaaccaa tacttcagcc gttgttctgt gagcacctga gactgcggtg gaatagcatc
    23341 cagctcggaa acacccgaaa gcagcgtact gtcatctgcc atcatcgtgg caaattgcgg
    23401 tagtgaagcg cgtttcgcgg atttgttata gcgttcaacc tcgacctcat aatcaatcgt
    23461 ttttgccgtt gaggtaatgg cgagaatatc cagctttacc ggaatcggcg tcgcatcgcc
    23521 atccaacaat tcaaggcgcg gcgcggcatc aaaatggtta gcttcccgct cattctccag
    23581 gcgaggcagg cgaaaattga cctggttgat gagctgggta ttaaaactga ccactagcgg
    23641 tggggagata tacagccgtt cttcactatt ggaaagatga atcgtcttct caacgcgaaa
    23701 cactaactga tgcggtccat tatccagttc aatgctgtcc gcaccgcgca gcagagagct
    23761 ggaaaccttc ttgccgtcga gtaccagaag atcgacatcg gttgaaagcc gcagcgtggt
    23821 ggcaaaaacg gataccggca aacataatgc aatcaaggtg gtcacgatgc cggttttcat
    23881 aggtagctcc tgtcaaaaga ccgcccgaat aataatgtgt caaaattttt ctttaatcat
    23941 acttactaac atatagacat atttcccgct tttgctctca ttcattcgta ttagctgcat
    24001 ggttggcatg tcggctttgt cgtacacttt gttaaacagt ctggaggaaa taatgaaaga
    24061 aaccgatatt gcaggcattt taacgtccac tcacaccatt gcgctggtgg gggcaagcga
    24121 caaacccgat cgtcccagct atcgcgtgat gaaatatcta ctcgaccagg ggtatcatgt
    24181 cattccggtt tcgccaaaag ttgccggcaa aacgctgctg ggccagcagg ggtatggcac
    24241 gctggcagac gttccggaaa aggtcgatat ggtcgatgtt ttccgtaatt cagaagcggc
    24301 gtggggcgtg gcacaggaag ctattgccat tggcgcgaaa accctctgga tgcaactggg
    24361 ggtgattaat gagcaagcgg cagtactggc acgggatgcc gggttgaatg tggtgatgga
    24421 tcgctgcccg gctattgaga tccctcgcct gggcctggcc aaataaaaaa tccccggaag
    24481 gcaaaaacct tccggggatt cgttcaggga tcagttacgc agacgcgggg cctggagttg
    24541 tttgcggatg gtctgcgcca gctcatccat ggatggctgt tcaggatgtt catcctgcaa
    24601 ttcgctactt agctgggctt cagccaggta ggtatgaacc ggtaggccgt tatcgtcctc
    24661 catcactacg tgataccacg gagcggcgcg aagctcgtca tttaccgcca gctcatcagg
    24721 cgacggttca gagagcgaat aaaccgggtc gatatccacg accactccga gataacctaa
    24781 cagggaatgg cggacctgct ggccgatacc gaatttgctg gcaatcatag tcacctcccg
    24841 ggaaatcttt acctttgata taagggtaaa attccacatt tcaagttaca tgacgcgaca
    24901 ggcaaaccct ttcagatata gcccttccgg ataggtagcg atcaccggat gatcggctgc
    24961 ctgacggaac tgctctataa attgtacatc acggccggca tcaattgcgg catccgcgat
    25021 gattttctga aataaatcgc tggtcatcag accggaacag gagaaagtca ggagaatacc
    25081 gccttcattc agcaactgaa tcgccagcat gttgatatct ttatagccac gacacgcgcc
    25141 catcaactgg cttttattct caacaaactt cggcgggtcc atcacgataa cgtcaaattt
    25201 ttcaccgcga tcgcgataag tacgcagcaa tttaaagaca tcatcacgga caaactcagc
    25261 cttgctcaga tccagtttgt tcagctcaac gttctgccgt gcaatatcca gcgcttcctg
    25321 ggaggtatca acgctgacaa cctggctgca accgcccatc agtgccgata cggcgaaacc
    25381 accggtatag gagaaacagt tcagcacacg tttattttca acgtagcggc gggtagccag
    25441 gcggctgtct cgctggtcca ggtagtagcc cgttttgtgt ccgtgctgaa tatccaccag
    25501 cagcttcatg ccgtgttctt caatcggcag cagggcaggc ggcaactcgc cggtgacgag
    25561 gcccagggtc agctccatcc cttctttttt acgtaccgca acatcgctgc gatcgtaaat
    25621 cgcacattcc gggtacagcg tttgcagggc actaactaat gccgcgcgct gatattctgc
    25681 cccagcactc agcagttgca gcaccagaaa attaccgaaa cgatcgatag taatacccgg
    25741 caggccatca gattctccgg cgattaaacg atagctgtcg aggccatctt tttgcgccag
    25801 ccagtcacgc catttttgtg cttgttgcaa acggcgggaa aaaaaagcaa tgtcgataga
    25861 ctcagacggg tcaaacgtcc agacgcgcgc ccggatttgc gaagctggcg aataagcgcc
    25921 gcgtgctaac cattttccct gatgatcaac aatatcgatg gtttcaccga ggctggcttt
    25981 accttccatg cgggcaacgg ccccggaaaa gacccacgga tggcgacgaa gtaatgattt
    26041 ttcgcgccct ttggctaaca ctaaacgtac actcataatt tacttttctg tcgatgcaaa
    26101 gaaatgggcg tcattgtccg gagttttcca tggatttgca acgcgtccat taaggataag
    26161 gagagcagca atgtcgaaag tctgcataat tgcctgggtt tacgggcgag ttcagggcgt
    26221 aggatttcgc tacaccacac agtacgaagc gaaaagactg ggtttaaccg ggtacgccaa
    26281 aaatcttgac gatggcagcg tggaagtggt tgcctgcggt gaagaagggc aggtggaaaa
    26341 attaatgcag tggttaaaga gtggcggccc gcgttctgcg cgtgtagaac gggtgctcag
    26401 cgagccgcat catccctcgg gggaattaac cgattttcgt atccgttaaa tacattttac
    26461 cggttttggc aggccagcaa ttttggtggc ttgcttagcc ggacctttcg gaaacagtcg
    26521 gtataaatag cggctgttac ctttttcttc gccaaattta ttcgccatcg cttttaccag
    26581 catacgaatc gccggagaag tattgaattc cagatagaaa tcacgcacaa aacgcaccac
    26641 ttcccagtgt tccggtgaca gcgaaatccc ttcgttctct gcaatcacca ctgccagcgg
    26701 ctcactccac tggctgcttt ctttgagata gccttcggta tccgtttcta tctctttacc
    26761 ttcgaagatc agcataatta ttactacctt aatcagactg gcggcagtgt aacaaaaaac
    26821 aaagccccgc ataaagcgag gctatgaaag tgttagcggg tgagattaat cgcggctggc
    26881 gaagcccaga atgctcagca ggctgacgaa gatgttgtac agcgaaacat acaggctaac
    26941 cgtggcacga atatagttcg tttcaccgcc atgaacgatg ttgctggttt caaacaaaat
    27001 agcgccagag gagatcaaaa tgaagaccgc actgatcgcc agatgcagag caggcagctg
    27061 caggaagata ttagcaacca taccaatcag caccaccaca atacccgcca tcagcatacc
    27121 gccgaggaac gacatatctt tgcgggtggt cagcacatat gcagagcagc agaagaacac
    27181 taacgccgtt ccgcccagag ccatagcgat tacgtccccc attccggcag acagataggt
    27241 gttcagaata ggtccgagga tataacccag aaaaccggta aaggcgaatg cggagataat
    27301 cccggtcggc ttattcgccg ttttataggt caggaacatc aaaccataca tacccaccag
    27361 cgtcagaatc agacccggag atggcagcat cagcaccgta ctggcagttg cggtaatcgc
    27421 cgaaaaggcc agcgtcaggc tcagcagaaa ataggtatta cgcagcacct tatgggtgct
    27481 aagcagtgat gtacggtcat gtgaagaact aacaatacga tccattgagt cactctctat
    27541 gacagatgta attaattaag cagcataatg ataatgcgta agggcaccca gaagttttac
    27601 ccatctttac gcatttgatc tggaacaggt ttaacagcgg attatcaggt cattaagcaa
    27661 atataacgcc ctgagaattt cgacaggcaa aagaaaaagg ggttagcatt tagctaaccc
    27721 cttatcttat ttggcggaag cgcagagatt cgaactctgg aaccctttcg ggtcgccggt
    27781 tttcaagacc ggtgccttca accgctcggc cacacttccg gaatgacgcg cactataaac
    27841 atcccgatgc ggcgtgtaaa cccctaattt gtttgtttgc ctgaaaaaca gccaaaagtg
    27901 cattgatagc gtgaaataac agcagattga tcatttcatc accatgaatt ccttctcttt
    27961 tactcgttta gcaaccggct aaacatcccc accgcccggc aaaaagaaaa ataggtccat
    28021 ttttatcgct aaaagataaa tccacacagt ttgtattgtt ttgtgcaaaa gtttcactac
    28081 gctttattaa caatactttc tggcgacgtg cgccagtgca gaaggatgag ctttcgtttt
    28141 cagcatctca cgtgaagcga tggtttgcct tgctacaggg acgtcgcttg ccgaccataa
    28201 gcgcccggtg tcctgccggt gtcgcaagga gaagagacgt gcgatatgaa taacgaggaa
    28261 acattttacc aggccatgcg gcgtcagggc gttacccggc gcagctttct caaatattgt
    28321 agtctggctg ccacgtcgct gggattaggc gcgggaatgg caccaaagat tgcctgggcg
    28381 ctggagaaca aaccccgcat tccggtggta tggatccacg gtctggaatg cacctgctgt
    28441 accgaatctt ttatccgctc cgctcaccca ctggcgaagg acgtcatcct ttccctgatt
    28501 tccctcgatt atgacgatac tttgatggct gccgccggaa cccaggcgga agaagtcttc
    28561 gaagacatca tcacgcaata caatggcaaa tatatcctcg cagtagaagg taatccgccg
    28621 ctgggcgagc aggggatgtt ctgtatcagc agcggtcgac cgtttattga gaaactcaaa
    28681 cgtgccgctg ccggagccag cgcgattatc gcctggggaa cctgcgcgtc ctggggctgc
    28741 gtgcaggccg cgcggcccaa tccgacgcag gcaacgccta tcgacaaagt catcaccgac
    28801 aaacccatta tcaaagtacc tggctgcccg ccgatcccgg atgtgatgag cgccatcatt
    28861 acttacatgg tgacctttga tcgcttgcca gatgtcgaca gaatgggccg tccgctgatg
    28921 ttctatggtc agcgaatcca cgataaatgc tatcgccgcg cccacttcga cgccggagag
    28981 ttcgtccaga gttgggatga tgacgctgcc cgcaaaggtt actgcctgta caaaatgggc
    29041 tgcaaagggc ctaccaccta taacgcctgt tcctccacac gctggaatga tggcgtttct
    29101 ttcccaatcc agtctggtca cggctgcctg ggctgtgcgg aaaatggttt ctgggatcgc
    29161 ggttcgttct acagccgcgt ggtcgatatt ccgcaaatgg gtactcattc caccgccgat
    29221 accgtcggtt taaccgcgct tggcgtggtg gcagcggctg ttggtgtgca cgcagtcgcc
    29281 agcgccgttg accagcgcag acgtcataac cagcaaccta cagaaaccga acatcagcca
    29341 ggcaatgagg ataaacaggc atgagcactc agtacgaaac tcagggatac accatcaata
    29401 atgccggacg ccgcctggtg gtcgacccga ttacgcgcat cgaaggccac atgcgctgcg
    29461 aagtgaatat taacgatcag aatgtgatca ccaatgccgt ctcctgcggc accatgtttc
    29521 gcgggctgga gatcatccta caagggcgcg acccgcgcga tgcgtgggcg ttcgttgaac
    29581 gtatctgcgg cgtctgtact ggcgtacacg ccctggcttc ggtttacgcc atcgaagatg
    29641 ctatcggtat taaagtgccg gacaacgcca atatcatccg caacattatg ctggcaacgc
    29701 tctggtgcca cgatcatctg gtgcacttct atcagcttgc cgggatggac tggatcgatg
    29761 tgttagatgc gctgaaagcc gacccgcgga aaacctccga actggcgcaa agtctctcct
    29821 cttggccgaa atcatcccct ggctatttct tcgacgtaca aaaccgcctg aaaaaatttg
    29881 ttgaaggcgg gcagttgggg atcttccgca atggctactg ggggcacccg cagtacaaac
    29941 tgccgccaga agctaacctg atgggctttg cccactatct cgaagctctc gatttccagc
    30001 gtgaaattgt caaaatccac gcggtctttg gcggtaaaaa cccgcatcca aactggattg
    30061 tcggcgggat gccttgcgcc atcaacattg acgaaagcgg cgcggtcggg gcagtcaata
    30121 tggaacgcct gaacctggtg cagtcaatta tcacccgcac ggcggacttc attaacaacg
    30181 tgatgatccc cgacgcctta gccatcggtc agttcaacaa accgtggagc gaaatcggca
    30241 ctggtctttc tgataaatgc gttctcagct acggcgcatt cccggatatt gccaacgact
    30301 ttggcgagaa aagtctgctg atgcctggcg gcgcggtgat taacggcgac ttcaacaatg
    30361 tgctgccagt ggatttggtt gatccgcagc aggtgcagga gtttgtcgac cacgcctggt
    30421 atcgatatcc caacgatcag gtcgggcgtc atccgttcga tggcatcacc gacccgtggt
    30481 acaaccccgg cgatgtcaaa ggcagcgata ccaacattca gcagctgaat gaacaggaac
    30541 gctactcgtg gatcaaagcg ccacgctggc gcggtaacgc gatggaagtg gggccgctgg
    30601 cgcgcacgtt aatcgcttat cacaaaggcg atgctgcgac cgttgagtcg gtcgatcgca
    30661 tgatgtcggc gttgaacctg ccgctttccg gtatccagtc aacgttaggc cgcattttgt
    30721 gccgcgcgca cgaagcgcag tgggccgcag gtaagttgca gtatttcttc gacaagctga
    30781 tgaccaacct gaaaaacggc aatctcgcca ctgcttccac ggaaaaatgg gaacctgcaa
    30841 cctggccgac agagtgccgt ggtgtcggtt ttaccgaagc gccgcgcggg gcgttaggcc
    30901 actgggccgc cattcgcgat ggcaagattg atctctacca gtgcgtggtg ccgaccacct
    30961 ggaacgccag cccgcgcgat cccaaagggc agattggcgc ttatgaagcg gcgctgatga
    31021 acaccaaaat ggcgatcccc gagcaaccgc tggagatcct gcgtactctg cacagctttg
    31081 acccgtgcct cgcctgttca acacacgtgc tgggcgacga cggtagcgag ctgatctccg
    31141 tgcaggtgcg ttaacagcga aggagaatca tcatgcaaca gaaaagcgac aacgttgtca
    31201 gccactatgt ctttgaagcg ccagtccgca tctggcactg gttgacggtg ttatgcatgg
    31261 cggtgttgat ggtcaccgga tactttatcg gcaagccgct accttccgtc agcggcgagg
    31321 cgacgtatct gttctatatg ggctacatca ggttaattca cttcagcgcc gggatggttt
    31381 ttaccgtggt tttgctgatg cggatctact gggcttttgt tggcaatcga tactcccgcg
    31441 agctgtttat cgtgccggta tggcgtaaaa gctggtggca gggcgtgtgg tatgaaatcc
    31501 gctggtatct gtttctggca aaacgtccga gtgccgatat aggccataat cccatcgccc
    31561 aggcggcgat gttcggctat ttcctgatgt cggtctttat gatcatcact ggttttgcgc
    31621 tgtacagcga acacagccag tacgctattt ttgcgccgtt ccgttatgtg gtggaatttt
    31681 tctactggac gggtggcaac tcaatggaca ttcacagctg gcatcggctg gggatgtggc
    31741 tgattggcgc gtttgtgatc ggtcatgtct acatggcgct gcgtgaagac atcatgtccg
    31801 acggcacggt gatctccacc atggtcaacg gctaccgtag ccacaaattt ggcaaaataa
    31861 gtaacaagga gtgttcatga gcgagcaacg cgtggtggtc atggggctgg gcaacctgct
    31921 gtgggccgat gaaggcttcg gcgtgcgggt ggcggaacgg ctgtatgccc attaccactg
    31981 gcccgagtat gtggagattg tcgatggcgg tactcaggga ctgaacttgc tggggtatgt
    32041 cgaaagcgcc agccatctgt tgattctcga tgccattgac tacgggctgg aacctggaac
    32101 gctgcgaacc tatgccggag aacgcattcc ggcttatctc agcgcgaaga aaatgagcct
    32161 gcatcagaac agtttctccg aagtgctggc gctggcagat atccgcggac atctgccagc
    32221 acatattgcc ctcgtcgggc tgcaacccgc gatgctcgac gactacggcg gcagcctgag
    32281 cgaactggca cgggagcaac tgctcgctgc ggaacaatcg gcgctggcgc agttggctgc
    32341 gtggggaagt gtgccgcaac tggctaatga atcgcgttgt ctcaattatg actgtctgtc
    32401 gatggaaaat tacgaaggcg ttcgcttgcg ccagtaccgg atgacacagg aggagcaggg
    32461 atgagcaacg acacgccatt tgatgcgttg tggcaacgaa tgctggcgcg cggctggacg
    32521 ccggtcagtg aatcccgtct tgacgactgg cttacgcaag cgccagacgg cgtggtgtta
    32581 ttaagcagtg acccgaaacg cacgccagag gtcagcgata atccggtaat gattggcgaa
    32641 ttactgcacg agtttcccga ctatacatgg caggtggcga ttgctgacct tgagcagagc
    32701 gaagccatcg gcgatcgctt tggcgtcttt cgctttccta ccactttagt gtttaccggc
    32761 ggaaactatc gcggcgtgct gaatggtatt cacccgtggg cggaactgat aaacctgatg
    32821 cgcgggcttg tcgaaccgca gcaggagcgt gcctcatgag cgaaactttt ttccatctgc
    32881 tggggccagg aacgcaaccg aacgatgaca gtttcagcat gaatccactg ccgatcacct
    32941 gtcaggtgaa tgatgaaccg agtatggcgg ccctggagca atgtgctcac agcccgcagg
    33001 tgattgcgct gttaaacgag ttacaacatc aactaagcga acgccagccg ccgttgggcg
    33061 aggtgctggc agtcgatctg ttaaatctca acgccgacga tcgtcacttt atcaatacgc
    33121 ttctcgggga aggggaagtg tcagtgcgca ttcagcaggc tgacgacagt aaaagtgaaa
    33181 tacaggaggc gatcttctgc ggattatggc gggtgcgcag acgtcgcggc gaaaagttgc
    33241 tggaggacaa actggaggct ggctgcgcgc cgctggcgtt gtggcaggcg gcaacgcaaa
    33301 atctcttgcc gacagattcg ctgttaccgc cgcccattga tggcctgatg aatggcctac
    33361 cgttggcgca tgagttactg gcacatgtac gtaaccccga cgcgcagccg cacagcatta
    33421 atctgacgca attacccatc agcgaggctg atcggctttt tctctcacgt ctctgtgggc
    33481 cgggaaatat tcagattcgt accattggct atggcgagag ctatatcaac gccacggggt
    33541 tacgccatgt ctggcattta cgctgtacgg acaccttaaa aggcccgtta ctggaaagtt
    33601 atgaaatctg cccaataccg gaagtggtgc tggcagcgcc agaagatttg gtcgactctg
    33661 cgcagcggct tagcgaggta tgtcagtggc tggcggaagc tgcaccgacg taaaaagacg
    33721 gtaagtatcg ctttcagtct tatgaatatc gcaatcggcg aatacctctg gtcgtagagt
    33781 ttcaggataa agagggagat ctaacattat cgggttattt ttctctcttc gcctacagga
    33841 gtgcgcatgt gggatgtcat tgatttatcg cgctggcagt ttgctctgac cgcgctgtat
    33901 cactttttat ttgtacccct taccctgggg ctgatttttt tgctggctat catggaaacc
    33961 atttacgtgg tcaccggcaa aacaatctac cgcgatatga cgcgcttctg gggtaagctc
    34021 ttcggtatca attttgctct tggcgtggct accggcctga ccatggagtt tcagtttggt
    34081 actaactggg cattctattc caactatgtg ggcgatattt ttggcgcacc gctggcgatg
    34141 gaagcattaa tggccttctt cctcgaatcc acctttgtcg ggcttttctt cttcggctgg
    34201 cagcggctga ataaatacca gcacctgctg gtgacgtggc tggtggcgtt cggttcaaat
    34261 ctctctgcat tgtggatatt gaatgccaac ggttggatgc aatacccgac cggtgcgcat
    34321 tttgatatcg acaccctacg tatggagatg accagcttca gcgagctggt ctttaacccg
    34381 gtcagccagg tgaaatttgt gcacaccgta atggcgggct acgtgaccgg ggccatgttt
    34441 attatggcga tcagcgcctg gtatttactg cgcggacggg agcgcgatgt tgcattacgc
    34501 tcgtttgcca tcggttccgt cttcggtact ctggcgatta tcggcacgct acaactcggg
    34561 gacagttctg cgtatgaagt cgcgcaagta caaccggtaa aactggcggc gatggaaggg
    34621 gagtggcaaa cggaacctgc tcctgcaccg ttccatgtgg ttgcctggcc ggaacaggat
    34681 caagagcgta acgcctttgc catcaaaatt cccgcgctgt tagggatcct cgccactcac
    34741 tcattagata aacccgtgcc gggtctgaag aatttgatgg ctgaaaccta cccacgcttg
    34801 caacgcggac gtatggcctg gctgttaatg caggaaatat cgcaaggcaa tcgtgagccg
    34861 catgtgttgc aggcattccg ggaactggaa ggtgacctgg gctacggcat gttgctctcc
    34921 cgctatgcgc cggatatgaa tcatgtcaca gccgcacagt accaggcggc gatgcgtggc
    34981 gcgatacctc aggttgcgcc ggtattctgg agtttccgca tcatggtggg ctgtggttcc
    35041 ctgctgctac tggtgatgct gattgcgctt gtccagacgc tgcgtggcaa aatcgaccag
    35101 catcgctggg tgctgaaaat ggcgctctgg agtttgccgt tgccgtggat tgcgattgaa
    35161 gccgggtggt ttatgaccga gtttggtcgt cagccgtggg cgatacagga catcttaccg
    35221 acatactccg cgcactccgc tttaaccaca ggacaactgg ctttctcact gatcatgatc
    35281 gtagggcttt acaccctgtt cttaatcgcc gaagtctacc tgatgcagaa atatgcccgt
    35341 ctggggccga gcgcgatgca gagtgaacaa ccgacgcagc aacaggggta aagaagaaaa
    35401 tcatgtttga ttatgaaaca ttgcgcttca tctggtggct gctgattggc gtgatcctgg
    35461 tggtctttat gatctccgac ggatttgaca tggggatcgg ctgtctgctg ccgctggtgg
    35521 cgcgtaatga tgatgaacgc cggatagtga taaacagcgt tggtgcacac tgggaaggca
    35581 accaggtctg gttgatcctc gctggtgggg cattatttgc cgcctggccc agagtgtatg
    35641 cagcggcgtt ttccggcttt tatgtggcga tgatcctggt gctgtgctca ctgttcttcc
    35701 gcccgctggc ctttgattat cgcggaaaaa tcgccgatgc acgctggcgt aaaatgtggg
    35761 acgccggtct ggtcatcggc agtctggtgc cgccggtagt cttcggtatc gccttcggca
    35821 acttgttgct cggcgtgccg tttgccttca caccgcaatt acgcgtggag tatctcggca
    35881 gcttctggca actgctgacg ccattccctt tattgtgcgg attgctcagc cttgggatgg
    35941 taattttgca aggtggcgtc tggttacaac tgaaaactgt tggtgtgatt catctgagtt
    36001 cacagctggc caccaaacgc gctgcactgt tggtgatgct gtgctttttg ctggcgggtt
    36061 actggctgtg ggtcggtatt gatggctttg tactgctcgc ccaggatgct aacggtcctt
    36121 ccaatccgtt aatgaaactg gtggcagtgc tacctggtgc ctggatgaat aatttcgtcg
    36181 aatcgcccgt tttgtggatc ttcccgctgc tggggttctt ctgcccattg ctgacggtga
    36241 tggcgattta tcgtggtcgc ccaggttggg gatttttaat ggcgtcattg atgcaatttg
    36301 gcgtgatttt cacggcaggc atcacgctgt tccccttcgt catgccgtca agcgtgagtc
    36361 cgatctccag cctgacgttg tgggacagca cttccagcca gctgacgctg agcattatgt
    36421 tggtaatcgt gctgatattt ttgcccattg tgttgctcta cactctctgg agctactaca
    36481 aaatgtgggg gcgcatgaca acagaaactc tccgccgtaa cgaaaacgag ttgtactaag
    36541 gagcaggaac aatgtggtat ttactttggt tcgtcggcat tttgttgatg tgttcgctct
    36601 ccacccttgt gttggtatgg ctggacccgc gtctgaaaag ttaacgaacg taggcctgat
    36661 gcggcgcatt agcatcgcat caggcaatca ataatgtcag atatgaaaag cggaaacata
    36721 tcgatgaaag cgatcttaat cccattttta tctcttctga ttccgttaac ctcgcaatct
    36781 gcattcgctc agagtgagcc ggagctgaag ctggaaagtg tggtgattgt cagtcgtcat
    36841 ggtgtgcgtg ctccaaccaa ggccacgcaa ctgatgcagg atgtcacccc agacgcatgg
    36901 ccaacctggc cggtaaaact gggttggctg acaccgcgcg gtggtgagct aatcgcctat
    36961 ttcggacatt accaacgcca gcgtctggtg gccgacggat tgctggcaaa aaagggctgt
    37021 ccgcagcctg gtcaggtcgc gattattgct gatgtcgacg agcgtacccg taaaacaggc
    37081 gaagccttcg ccgccgggct ggcacctgac tgtgcaataa ccgtacatac ccaggcagat
    37141 acgtccagtc ccgatccgtt atttaatcct ctaaaaactg gcgtttgcca actggataat
    37201 gcgaacgtga ctgacgcgat cctcagcagg gcaggagggt caattgctga ctttaccggg
    37261 catcggcaaa cggcgtttcg cgaactggaa cgggtgctta attttccgca atcaaacttg
    37321 tgccttaaac gtgagaaaca ggacgaaagc tgttcattaa cgcaggcatt accatcggaa
    37381 ctcaaggtga gcgccgacaa tgtctcatta accggtgcgg taagcctcgc atcaatgctg
    37441 acggagatat ttctcctgca acaagcacag ggaatgccag agccggggtg gggaaggatc
    37501 accgattcac accagtggaa caccttgcta agtttgcata acgcgcaatt ttatttgcta
    37561 caacgcacgc cagaggttgc ccgcagccgc gccaccccgt tattggattt gatcatggca
    37621 gcgttgacgc cccatccacc gcaaaaacag gcgtatggtg tgacattacc cacttcagta
    37681 ctgtttattg ccggacacga tactaatctg gcaaatctcg gcggcgcact ggagctcaac
    37741 tggacgcttc ccggtcagcc ggataacacg ccgccaggtg gtgaactggt gtttgaacgc
    37801 tggcgtcggc taagcgataa cagccagtgg attcaggttt cgctggtctt ccagacttta
    37861 cagcagatgc gtgataaaac gccgctgtca ttaaatacgc cgcccggaga ggtgaaactg
    37921 accctggcag gatgtgaaga gcgaaatgcg cagggcatgt gttcgttggc aggttttacg
    37981 caaatcgtga atgaagcacg cataccggcg tgcagtttgt aatgcataaa aaagagcatt
    38041 cagttacctg aatgctctga ggctgatgac aaacgaagaa ctgtctaatg cgtagaccgg
    38101 aaaaggcgtt cacgccgcat ccggccactt tcagttttac tctttctcgg agtaactata
    38161 accgtaatag ttatagccgt aactgtaagc ggtgctggcg cgtttaatca caccattgag
    38221 gatagcgcct ttaatattga cgcctgcctg ttccaggcgc tgcattgaca aactcacctc
    38281 tttggcggtg ttcaagccaa aacgcgcaac cagcaggctg gtgccaacag aacgccccac
    38341 gaccgcggca tcactcaccg ccagcatcgg cggcgtatcg acaatcacca gatcgtaatg
    38401 gtcgttcgcc cattccagta attgacgcat ccgatcgcgc atcagcagtt cagacgggtt
    38461 aggtggcacc tgaccgcgag taatcacatc aaagcctcct ttgccaaaat gctggatcac
    38521 tttgttgagc tcatctttac ctgccagata ttccgacaag ccatgttcat tactcacggt
    38581 aaacaggtta tgcgaataac cacggcgtaa gtcggcatca ataaataaca ctttttgatc
    38641 ggactgggcg atcaccgctg ccagagttga actgacaaac gttttaccac tgtctggcgt
    38701 cgcaccggtg atcatcagaa tgttattctc cgtctccatc atagcgaagt gcagactggt
    38761 tcgtagcgca cgtacggctt ccacagcaga atccgccggg ttatccaccg ccaggaaggg
    38821 gatattttta gtacgatggc gctgctgatt agaaaataaa tttttcttac gcagacgggt
    38881 acgtttatcc agccactcgg acattgggat agtggcataa acgctgatgc cgtgctcttc
    38941 cagttgttcc ggggcttcta caccacgacg caacatcgca cgcgccagca cggcacccac
    39001 cgaaataaac aggccaagaa taaaaccaag caccacgttc aacgcttttt tcggtttcac
    39061 tggctgcggc tgagtgactg ctgggtcgat aatccgcacg ttaccaatgg cactggattt
    39121 cgaaatactc aactcctgct ggcggttaag taattgcaga tataccgcac ggcccgcttc
    39181 tacgtcacgg cttaaacgta acacttcctg ttgagtggaa ggcattgccg atacccgctt
    39241 attcaggcgt ttgcgttctt gctccagcgt ctggcgtttt tccagcagcg cacgataagt
    39301 tgggtgatct ttcttataca gctgggagat ctctgcctcg cggaaagtca gctcattgag
    39361 ttgattatca acgttcacaa tctgctcaag aacggctttg gcttctaggt taaggtcaac
    39421 cgaatcgcgc tgctggcgat aaacgttgag tttttcttcc gcctggtcca gctcgctgcg
    39481 cacttcaggc aactggcgct gtaagaattc aaggctttgt gaatcctgcg ccgcctggcg
    39541 agcgatattc tgttgcaaat agttgttagc gatgctgttc agaatacgag taatcaactg
    39601 gggatcatca ccagtcatgg taagttccag catcccgctt tctttactgc gttcgctaac
    39661 ggtaaaggtt tcctgcaatg cgttaatcgc ttccagttcg gtacgctggc tcaggacaaa
    39721 ctgtgttcct ggtttggcct taatgtccgc gatagtcagc gcaacgccat ctttttccag
    39781 acgctggccg accataccat tgacggtgaa ctcttcacct tccagtgtat agtggccgtt
    39841 ttccccaacc gtgagtgtca gttgctgatc ctgaccattc agttgtggaa tatgcatcca
    39901 gctgatcgcc agctcacctg gtttttcttt ggttaatctc gcccagccgc gacccacaat
    39961 cggaaaatac ttctgctcaa ctatgtcgcg cagattcagt tcagcaatgg ttttaccgag
    40021 aatcatgcgc gattgcagca gttggatctc cggtgcagac tcgggcgatg agttagggat
    40081 catatcgctc aggccgctga gaatggcgtt gccctgtttt tgctcaacct ggaccagagt
    40141 atctgcctga taaattggtg tgcttaacag cgagtaagcg acagcgatca gcgtgaataa
    40201 cgcggttacg ctgataataa acttacggtg atcccataac tcgccgacca gacgaagcag
    40261 atcgatctca ttttcctgag tgctgcctgg tggcgtattc atatttttag ttgtcatcgt
    40321 attttataaa ctcaaattac cggctgaggc gcttcgccca ttcctgactg gcgcgctcca
    40381 acataccgta gacatgttca aatgcgtcct gacttttacg atagggatcc gggatctctt
    40441 tctgttccag ccattgccca aacagcattg tcttcccgcg gacctcggga gcgattgcgg
    40501 taacctgagc aatatgctct gactccattg ccagaatcag atcgtaattt cgtgccatct
    40561 cagcagtgag cttacgtccg gcatgtcctt caagagatac gccatgatta gcggcaacat
    40621 ctgctgctgt cgcatctgca gggtgtttta ccagaccatg aacacctgcc gatttgactt
    40681 ttacgcctgg cagacgttta cgcagcaagc gctcgccaat gggcgaacgg caaatgttgc
    40741 cggtacaaac caccaggatg gagttaaatt ttagttgggc catgtttgaa tccaccgtga
    40801 agtctctgtc aggtcatgca ccccggaaat cgtcggtacc agcagagaaa tcacacggtt
    40861 ccaacgagcc agcggcgcgg tagtgacata aacaatgtcg taaggttcaa gctggaattc
    40921 cgttccgagt atcattgccg atgcgtcctt cgcattcagc tgataaatat tggcgatttt
    40981 gccattctgc ttgttttgcg ttgcacgaat aacaaaaatc cccgtcgcat cagcgacatc
    41041 ctgattcata ccctcagcgt tacccagcgc ttccgccagg gtcataccgc tgcggtccat
    41101 tttcagcgtg ctctgtttac ccacttcacc catcacgaag actttcagat catcgttgcg
    41161 cggaataaat aaaatatcgc ccgggtgcag cagtttgttc tggcgcaagt cgccacgctg
    41221 catcagcgca tagaggttca ctttggtctt tacgccattc tgggtgagca ccacgttgcg
    41281 ccagtctgca tctgcggtca gaccgcccgc ggcgttaatc gcatccatga tggtcagagg
    41341 aatattggta atcggctgct gacccgattt gctgacttcg ccggtgacgt acgctttttg
    41401 cgatcggaac gccgcgacgc tgacatcgac ttgcgggctt tcaatgactg aatcgagacg
    41461 cgctgtaatc tcgttgcgta cttgggtaag tgttttcccg gccactttca ggcgaccaat
    41521 ataggggtag aaaatcgcac catcggcgtt aacccagttg ccggtatcac tggcgctacg
    41581 gtattgccct gcgggggtgg ttagttccgg gtgatcccag accgtaacca tcaacacatc
    41641 accaatcccg atacgatatt catagtttgc gatttgctgc tccagctccg ggttagcctg
    41701 cgacataatc ggtttggcgc gcaactgatc aatcaatcct ggcgtgacgg gatagatatt
    41761 gaccattttg tccaggtcat actgattgtc aggtagttca atgacatcct tgttcctggt
    41821 cgataaattc tgaccaggaa caagggtaca tgctgtcaaa gacagaacag ccaatgtcag
    41881 taccgaaaac ttaaaaatgt tctttttcat tggtttatat ttatcagtca atgtaatgtt
    41941 atgaattacg tcaggttatt gtccaaccgg tacttctcgc tctgccgtca ttggatagag
    42001 ctggtatttg cgtgacagca tttgtccacc atcacgcgtc aatggtgtcc acgaaaccac
    42061 cgcgcggttg cggttaggtc caatggtcat caagtcgaat ggaatcgaga tataaaaacc
    42121 tttactaaag ccgccttcgc cgtagtcatc tttagatacg ttactgattg ccgcccatac
    42181 ccctaccgcc acgccgctgt caaagcgttt ggcgacgtcg atcgttgctc ctttatcttt
    42241 tgccagatat tgcccaacgc taagtttcat cagtacgcca ttgagcgtcg gcgggttcca
    42301 gtaagccgtc acgaaaccag ttggcgtgga ataatcggtg aagcgcatca tgttgtccca
    42361 gtcacgttgc ttcacgtagt taacgtccac acccagcgcc cagctggcat ctagcgggcg
    42421 ataaagcagc tcggaaccga caccggcgta catcgtttcc agataaccgc catacacctg
    42481 gccatagaaa ccattgccta agtcggcaaa gtagttcgcc tgcaagttgt tgagataaac
    42541 gtcattgcga acgtaatcac ggatatgcgt gcgcacgcgg ggcagggtag agtccgcggg
    42601 caacagcgaa gacttaaact tgtcgtagtt gttgtaaata ttggtgaaaa taccgccatc
    42661 aagcagcagg tggtcggtaa accagtagcg ggcactggac atcagcccca gctggaacat
    42721 atagaaatct tccgggccgc ccagcgactg tgaaagtgtt gggttgaaag agtagctaaa
    42781 gcgatcttca cgaatacggt agccccgacc aaaggcagaa agatcttctg cttcaacacg
    42841 ttgttgttga agttgctctg attgaccagg cgctgtacca gccagctgtt tgcgcaggct
    42901 ggctacgtcg gtttcggtag tcaccatcgc catatgctcg cgcttttgcg tcacgctaat
    42961 cttctcaacg ccttgcggca ggttattcac cagaatccgg ttggcacgat cgaccgcttc
    43021 gcgagaatca cggtatttgt attgttgacc agacatatac agcgtcttat cgcgcagctg
    43081 aatttccggt gcttcaaaac ctgcgttgta cttcagcgcg gtaagttggt tcgctactgt
    43141 ggtgtactgc aatccttcag attcaggcgc aggttgatat gccggttttg gcgtatcgcg
    43201 cagggcaggg cgcagatcgt tgaaattggt ccgtaacgtg aagccaaaca tcaacgtgtt
    43261 accgcgttca taactcaggt tgagatctgc ccagctggca gcgcgataaa ctgcgccgac
    43321 gttgaaatgg cttgcctgag gcagtttgcc agcgaaatca ttctggtaat tgttgccatc
    43381 gtattcgagt ttcagacgca ggggattcca cggcgtttga tactcaatgc cgccaaagat
    43441 ggaagccggg ccacgaaaga tatcgctaaa gctgatatcg cccgcatcgt gagactctgc
    43501 gcgatgacaa tatttatcgt tcacccggca aaacgggttg gtaatattgc ccgcattacc
    43561 ggcgtagccc catgccatcc cgagggtgaa atcaaatggc cccgcttgct tgctggccac
    43621 cagatactca ccgtcaaaca gacccgtacc agcaatatca cgtttaccaa acgccacttg
    43681 cggtagccag taaccttctt cccacaggcg aagtttaaaa tcgaatgatt tgtctttgta
    43741 tgactgatcg ccgctgaaat cttcccactg gctatatttg cgtgtgcgca catccgtata
    43801 acgaatggtg ccttccagcc atgggaacag cgccacggag gtggagtaga accggtattg
    43861 atcgttatcc cggtagttga cgctgaattc accttccggt gcgatgcgcg catttggcat
    43921 ctgcaacaat cctgtgccgc caaagtctga ttgcgacgaa cccagcggat ccgggtaggt
    43981 taatacttca gcatgacagg cactggagac ggcaatggcc aggcagctta aaagataaga
    44041 attcttcttc atcagtcagg aacacgttgc gttaaaacag acacaatctg gtcatttaaa
    44101 tcagcatatt tttcgggcag tacatgcgca gaaaagccca accaaagctg gctgccaggc
    44161 ggtgggtcca catgtctttt attccacagg gcaacagggg cgacgacagt ctcaccctca
    44221 ggcgtaatca ccataacgtt attcttgtcc gcgcctgcaa ggcgggggtg atcttgcaga
    44281 taatcggtaa cgctacggcc tgcctgccag ggcaattgcc cggccccaga aaccgcaccc
    44341 agcagagtaa tagtcaccgg acgctgtacg gtatagagcg tatagtcccc gaccaacggg
    44401 ggattgctgt tctcatccac tcgaacaaaa tcagggtcca gtttgaccgg taagcgacca
    44461 gtgatattga gattgagtaa ctgctggcgc acagatttaa tcgttgccgc cacatcgtcg
    44521 tcagcttctg cttcccagga agcaagctgt gccatgacat gttggtagtc tttaagcgct
    44581 ttagctttcg ccgcagagtc ggtcagcaag gcaccaggcc accagaggcg atcgcgcagt
    44641 tgcggttgtg tcaccaactg gacaacattt tccatggggc caacggaaag tgtctgttgt
    44701 tcgccaggca gataaatagt caccgttcct tgcgcaaagg catggggtgt cattacgtaa
    44761 agtacgctgg caatgaaata cgactgtaat ttattcatgg tgcgggttta agaaacgtca
    44821 tttctacggg aataacccct gcgcctaaca tttgccgact ttgacgaacc tggccagtag
    44881 ccgaatcgac ccagaatgtg ttttgccact gtttttctgg ccgcgtggaa gtcacctctt
    44941 cctgccagac attacacagc acattgcgac ccgcaatatt cagcgtctct aatccagcaa
    45001 aggaaaaagt agaactcagg gtcgcagagc gaaaatggtt gtcttcactc cagagaatat
    45061 cgcgcgtcca gcggctgcca tcttttattg ccagcgcgtt acgcagaggg tcctgcccgg
    45121 aatttgtcac ttccagcaga ttattattaa gtttgacggt ttttaaaaga cgtccattgt
    45181 gggtaaccag catggcgtta tcctgggata accatttgct ttgttcttgt tctatatatc
    45241 ccagtaccac aaagattcgt tgcccttcat taaggcgtaa atacatcgtg gaataaggca
    45301 acgcctggat ctgctgatcc gctacggtga tatcctgatt atcgaaaagg ctggcgcgaa
    45361 atgtatcgac catactttgc tggctgtgcg tacatcccgc aagaaatagt gcgaaaatcg
    45421 ataaaataag agggcgcacc tttaatcctt gaaaggttaa ttaaaaaaat gcaaatcttt
    45481 aaagcccggt acgaatatcg caaccgggta tcatttaact ttaatttcga cgcgttaaag
    45541 cagtattagc gtgtagtgga cgtggtggtt gaggtgttat gagaaccgcc atcgccactg
    45601 tcatttgctg caacaactgc caacgtcgcc acaccaacag ccgttgccac accgacaact
    45661 gtcgccgtgc cgacagcgcc agcagccacg ccaccagtgg tagtagcagt cgtggttgcg
    45721 ccggtagtgg tcgttgtggt gccagtagta cccgtcgttg cctcggtccc gtttgttgct
    45781 tcaggggcag caaacgcagc tggcgtcgtc aacatgaagg ccataaggat tgcagaaagc
    45841 ttgtgtttca taacttttcc tttattcatc gcatggacaa tacgtacgct tgagatcagg
    45901 attgtctact ttgagtataa catccttgtg aaatctccct ttcctcatac cgcttgcact
    45961 atatactgcg ggtaggaaag gcgcgcagag ggaaatataa gattgttaac tatccccctc
    46021 tggaaatacg acttgtgagc ataagataaa tcttagcaaa atacaaatta aagataagga
    46081 aattgttacg aaagctatta attattgctg gtaatatagt ttcaagtggt actataactg
    46141 gctgttaaat ggcatttata actattaggt gcagagatat tcgcttaaat ggattagttt
    46201 ctttgtggaa aagtaactga tgttataata tatgatgttg actattgcac tattccaata
    46261 aaaccagtca gctttaaaca agcagcgtca tattaagaga gataaacatt tgccgctgtt
    46321 ggtcctcgca ggccatttac gcggcaaaat tccacacgta atcctggtat aagcacttct
    46381 gcgtcgcggg gagtgaatgc ggaaatatgg acctgaactt ctttacgacc gtcggagggg
    46441 ataatgaatc ctttgccgct tttgcgatca aaggttttga caattcctgt cattttacgg
    46501 gacaaacaaa ttccttactg aaaatactgc gctgcactat acggggttaa taaaataaag
    46561 ccagcgatat ttaagaccgc cggacggcta aaataaaatt tgcttaatct caattatcat
    46621 gcgttaatag ctgcgtcggt ttgaaagaca gacagcatac aaagtagttt actaaagcag
    46681 ttctcattat caggcattat ccccttcttt tgagtctctc tcctgaacac taagtagttt
    46741 ctgtattaaa gccctgtttg ccgaaaggcc caaaatgaag gaagtaaaat atgtctaata
    46801 aaatgactgg tttagtaaaa tggtttaacg cagataaagg ttttggcttt atcactcctg
    46861 atgatggcag caaagacgtt ttcgtccatt tcactgccat ccagagcaat gaattccgca
    46921 cgctgaacga aaatcagaaa gttgaatttt ctattgagca ggggcaacgt ggccccgcgg
    46981 cagcgaacgt tgttacgctc taaggttgcc gttattactc aacatctcca tttccgctgt
    47041 ccatgttgtc atggttcaca gtaccgcaca tcggcattcg atgtgacgga gcgaaatcct
    47101 ttgggcgcta agtgtatttt ttgtaaatcg acgatgatca cctttgataa cgtcacgctg
    47161 caaatacgca ctgaccatgc gccgctggat ttcacaaaat aatatcaggc tccctcg
//
LOCUS       DAJVUY010000007        45407 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.007, whole genome shotgun sequence.
ACCESSION   DAJVUY010000007 DAJVUY010000000
VERSION     DAJVUY010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 45407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45407
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.007"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(23..1195)
                     /gene="cgtA"
                     /locus_tag="OQQ72_000422"
     CDS             complement(23..1195)
                     /gene="cgtA"
                     /locus_tag="OQQ72_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HCS2010271.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(1211..2176)
                     /locus_tag="OQQ72_000423"
     CDS             complement(1211..2176)
                     /locus_tag="OQQ72_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS2010272.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(2303..2560)
                     /gene="rpmA"
                     /locus_tag="OQQ72_000424"
     CDS             complement(2303..2560)
                     /gene="rpmA"
                     /locus_tag="OQQ72_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCS2010273.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(2581..2892)
                     /gene="rplU"
                     /locus_tag="OQQ72_000425"
     CDS             complement(2581..2892)
                     /gene="rplU"
                     /locus_tag="OQQ72_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCS2010274.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            3151..4122
                     /gene="ispB"
                     /locus_tag="OQQ72_000426"
     CDS             3151..4122
                     /gene="ispB"
                     /locus_tag="OQQ72_000426"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HCS2010275.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR"
     gene            4352..4630
                     /gene="sfsB"
                     /locus_tag="OQQ72_000427"
     CDS             4352..4630
                     /gene="sfsB"
                     /locus_tag="OQQ72_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HCS2010276.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(4678..5937)
                     /gene="murA"
                     /locus_tag="OQQ72_000428"
     CDS             complement(4678..5937)
                     /gene="murA"
                     /locus_tag="OQQ72_000428"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HCS2010277.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(5992..6246)
                     /gene="ibaG"
                     /locus_tag="OQQ72_000429"
     CDS             complement(5992..6246)
                     /gene="ibaG"
                     /locus_tag="OQQ72_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417657.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HCS2010278.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(6406..6699)
                     /gene="mlaB"
                     /locus_tag="OQQ72_000430"
     CDS             complement(6406..6699)
                     /gene="mlaB"
                     /locus_tag="OQQ72_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HCS2010279.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLQLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(6699..7334)
                     /gene="mlaC"
                     /locus_tag="OQQ72_000431"
     CDS             complement(6699..7334)
                     /gene="mlaC"
                     /locus_tag="OQQ72_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HCS2010280.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(7353..7904)
                     /gene="mlaD"
                     /locus_tag="OQQ72_000432"
     CDS             complement(7353..7904)
                     /gene="mlaD"
                     /locus_tag="OQQ72_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HCS2010281.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(7909..8691)
                     /gene="mlaE"
                     /locus_tag="OQQ72_000433"
     CDS             complement(7909..8691)
                     /gene="mlaE"
                     /locus_tag="OQQ72_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HCS2010282.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(8699..9508)
                     /gene="mlaF"
                     /locus_tag="OQQ72_000434"
     CDS             complement(8699..9508)
                     /gene="mlaF"
                     /locus_tag="OQQ72_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HCS2010283.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            9718..10695
                     /locus_tag="OQQ72_000435"
     CDS             9718..10695
                     /locus_tag="OQQ72_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HCS2010284.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            10709..11695
                     /gene="kdsD"
                     /locus_tag="OQQ72_000436"
     CDS             10709..11695
                     /gene="kdsD"
                     /locus_tag="OQQ72_000436"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HCS2010285.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            11716..12282
                     /gene="kdsC"
                     /locus_tag="OQQ72_000437"
     CDS             11716..12282
                     /gene="kdsC"
                     /locus_tag="OQQ72_000437"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HCS2010286.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSELLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            12279..12854
                     /gene="lptC"
                     /locus_tag="OQQ72_000438"
     CDS             12279..12854
                     /gene="lptC"
                     /locus_tag="OQQ72_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCS2010287.1"
                     /translation="MSKARRWVTIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            12823..13380
                     /gene="lptA"
                     /locus_tag="OQQ72_000439"
     CDS             12823..13380
                     /gene="lptA"
                     /locus_tag="OQQ72_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HCS2010288.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            13387..14112
                     /gene="lptB"
                     /locus_tag="OQQ72_000440"
     CDS             13387..14112
                     /gene="lptB"
                     /locus_tag="OQQ72_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCS2010289.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            14160..15593
                     /gene="rpoN"
                     /locus_tag="OQQ72_000441"
     CDS             14160..15593
                     /gene="rpoN"
                     /locus_tag="OQQ72_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HCS2010290.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTSETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            15616..15903
                     /gene="hpf"
                     /locus_tag="OQQ72_000442"
     CDS             15616..15903
                     /gene="hpf"
                     /locus_tag="OQQ72_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HCS2010291.1"
                     /translation="MQLNITGNNVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            16021..16512
                     /gene="ptsN"
                     /locus_tag="OQQ72_000443"
     CDS             16021..16512
                     /gene="ptsN"
                     /locus_tag="OQQ72_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HCS2010292.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            16558..17412
                     /gene="rapZ"
                     /locus_tag="OQQ72_000444"
     CDS             16558..17412
                     /gene="rapZ"
                     /locus_tag="OQQ72_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HCS2010293.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            17409..17681
                     /gene="npr"
                     /locus_tag="OQQ72_000445"
     CDS             17409..17681
                     /gene="npr"
                     /locus_tag="OQQ72_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HCS2010294.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            17895..18527
                     /gene="yrbL"
                     /locus_tag="OQQ72_000446"
     CDS             17895..18527
                     /gene="yrbL"
                     /locus_tag="OQQ72_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HCS2010295.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR
                     RELKYYAYLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR
                     YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHHISESEVIPVVCDNIGESTLI
                     PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA"
     gene            complement(18524..19252)
                     /gene="mtgA"
                     /locus_tag="OQQ72_000447"
     CDS             complement(18524..19252)
                     /gene="mtgA"
                     /locus_tag="OQQ72_000447"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HCS2010296.1"
                     /translation="MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAV
                     MVERQVSAWLHGNFRYVAHSDWVSMDQISPWMGLAVIAAEDQKFPEHRGFDVASIEKA
                     LAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV
                     YLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRS
                     RQAWILRQMYQLGGEPFMQQHQLD"
     gene            complement(19249..19902)
                     /gene="elbB"
                     /locus_tag="OQQ72_000448"
     CDS             complement(19249..19902)
                     /gene="elbB"
                     /locus_tag="OQQ72_000448"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HCS2010297.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(20132..22468)
                     /gene="arcB"
                     /locus_tag="OQQ72_000449"
     CDS             complement(20132..22468)
                     /gene="arcB"
                     /locus_tag="OQQ72_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HCS2010298.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(22564..23493)
                     /locus_tag="OQQ72_000450"
     CDS             complement(22564..23493)
                     /locus_tag="OQQ72_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HCS2010299.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            24168..28628
                     /gene="gltB"
                     /locus_tag="OQQ72_000451"
     CDS             24168..28628
                     /gene="gltB"
                     /locus_tag="OQQ72_000451"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HCS2010300.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            28641..30059
                     /gene="gltD"
                     /locus_tag="OQQ72_000452"
     CDS             28641..30059
                     /gene="gltD"
                     /locus_tag="OQQ72_000452"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit GltD"
                     /protein_id="HCS2010301.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEQFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENKDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            30243..30722
                     /locus_tag="OQQ72_000453"
     CDS             30243..30722
                     /locus_tag="OQQ72_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005085993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HCS2010302.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
     gene            30739..31044
                     /locus_tag="OQQ72_000454"
     CDS             30739..31044
                     /locus_tag="OQQ72_000454"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS2010303.1"
                     /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD
                     LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR"
     gene            complement(31120..31584)
                     /locus_tag="OQQ72_000455"
     CDS             complement(31120..31584)
                     /locus_tag="OQQ72_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS2010304.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
     gene            complement(31581..32456)
                     /gene="nanK"
                     /locus_tag="OQQ72_000456"
     CDS             complement(31581..32456)
                     /gene="nanK"
                     /locus_tag="OQQ72_000456"
                     /EC_number="2.7.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HCS2010305.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPSGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            complement(32453..33142)
                     /locus_tag="OQQ72_000457"
     CDS             complement(32453..33142)
                     /locus_tag="OQQ72_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HCS2010306.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            complement(33190..34680)
                     /gene="nanT"
                     /locus_tag="OQQ72_000458"
     CDS             complement(33190..34680)
                     /gene="nanT"
                     /locus_tag="OQQ72_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HCS2010307.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVSGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSTKNDLVKTKS"
     gene            complement(34789..35682)
                     /gene="nanA"
                     /locus_tag="OQQ72_000459"
     CDS             complement(34789..35682)
                     /gene="nanA"
                     /locus_tag="OQQ72_000459"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HCS2010308.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            complement(35804..36595)
                     /gene="nanR"
                     /locus_tag="OQQ72_000460"
     CDS             complement(35804..36595)
                     /gene="nanR"
                     /locus_tag="OQQ72_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HCS2010309.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            36975..38341
                     /gene="dcuC"
                     /locus_tag="OQQ72_000461"
                     /pseudo
     CDS             36975..38341
                     /gene="dcuC"
                     /locus_tag="OQQ72_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            complement(38384..38881)
                     /gene="sspB"
                     /locus_tag="OQQ72_000462"
     CDS             complement(38384..38881)
                     /gene="sspB"
                     /locus_tag="OQQ72_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCS2010310.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA
                     LRVVK"
     gene            complement(38887..39525)
                     /gene="sspA"
                     /locus_tag="OQQ72_000463"
     CDS             complement(38887..39525)
                     /gene="sspA"
                     /locus_tag="OQQ72_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HCS2010311.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            complement(39920..40312)
                     /gene="rpsI"
                     /locus_tag="OQQ72_000464"
     CDS             complement(39920..40312)
                     /gene="rpsI"
                     /locus_tag="OQQ72_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCS2010312.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(40328..40756)
                     /gene="rplM"
                     /locus_tag="OQQ72_000465"
     CDS             complement(40328..40756)
                     /gene="rplM"
                     /locus_tag="OQQ72_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCS2010313.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(40974..42101)
                     /gene="zapE"
                     /locus_tag="OQQ72_000466"
     CDS             complement(40974..42101)
                     /gene="zapE"
                     /locus_tag="OQQ72_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HCS2010314.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            42295..42693
                     /locus_tag="OQQ72_000467"
     CDS             42295..42693
                     /locus_tag="OQQ72_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HCS2010315.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            42847..44214
                     /gene="degQ"
                     /locus_tag="OQQ72_000468"
     CDS             42847..44214
                     /gene="degQ"
                     /locus_tag="OQQ72_000468"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HCS2010316.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDCGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            44304..45371
                     /gene="degS"
                     /locus_tag="OQQ72_000469"
     CDS             44304..45371
                     /gene="degS"
                     /locus_tag="OQQ72_000469"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HCS2010317.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
BASE COUNT        11175 a        12130 c        11451 g        10651 t
ORIGIN      
        1 cacatggccg gggttttgct gattaacgct tgtaaatgaa ctcaacgcct tcttcgtcgt
       61 cttcgtccca gtcatcatcc cagtcctcat catcctcttc agcaatctct tcaagctgct
      121 ggcgatgata atcatcccac atgaattcga ctttctctgg ctgtttcgct tcttcagcct
      181 gcacgaccgg gttttcaatg ataaaggtca tcacatccca gcagagatct ttcacgccca
      241 gtccactcgc cgcagagatc agataatatt tatcttccca gcccagcgct tcagcaatcg
      301 ctttcgcttt ctcttcagct tctgccttat ccagcagatc gatcttattg aacactaacc
      361 aacgcggttt cgccgccaga tcctggctgt atttttccag ctcgctgata ataatacgcg
      421 cgttttcaac cggatcggtg ccgtcaatcg gatcgatatc gatgaggtgc aacaggacgc
      481 ggcaacgttc caggtgcttc aggaagcgga tacccagacc tgcgccttcc gcagcgcctt
      541 caatcagtcc tggaatatcg gcaacaacga agctcttttc gttgtccatt cgtaccacac
      601 ccagacttgg caccagagtg gtaaacggat aatccgccac tttcggttta gccgccgata
      661 ccgcgcgaat aaaggtcgat ttacccgcgt ttggcatccc caacataccg acgtcagcca
      721 gcagcatcag ctccagcagc agctcacgct tatcacccgg cgtaccgttg gttttctgcc
      781 gtggtgtacg gttaacggac gatttgaaac gggtattgcc cagaccgtgc cagccgccct
      841 tagcaaccag cagacgctga ccgtgtttag tcatatcgcc catggtttca ccagtaccct
      901 ggtcgattac acgcgtacct accggcactt taatcgtcac gtctttaccg cgcttaccgg
      961 tacaatcgcg gcttgcgccg ttctgaccgc gctctgcacg gaaagatttt tcaaaacgat
     1021 aatcgataag cgtgttcagg ttttcgtcgg cttccatcca tacgtcacca ccatcaccac
     1081 cgtcgccgcc atccgggccg cctttcggaa tatacttttc gcggcggaag ctcacgcaac
     1141 cattaccgcc atcacctgca acgaccagaa tcgatgcttc atcaacaaac ttcattttat
     1201 tctccgtaaa tcattcgcct gcgcggggtt gcgataccac cgttgtatgc ttacgtaatc
     1261 cgccccaaat acgatgacca atggcggaat acatcgcgcc cgcaaccacg acaaacgcac
     1321 cgagataacc taaaaggttt aacatcggtc tggcgaagaa atcgggccag gccagtgata
     1381 aaagatctga aaaaaacagc gtaaacagtg gggtgagcgt gatgatcgcg ctcacctgcg
     1441 ctgcctgcca gcgagccatc gcttccgcca gggcgccata tcctaccaat gtattcagtc
     1501 cgcaaaaaat taaacatgcg agctgccagt ggctaagctg cgctatcact cctggctttg
     1561 ccagagggaa gagcgcaatt gtacataaag tgtacagcaa aaacaggatc tgcggtgagg
     1621 ccagccgacg caataaaacc ttttgcgcca cgccataact cacccaaact gtcgccgcac
     1681 cgaccccaaa gatgactccc caggtgtaat cagtgagctt tgtaaatatc tcgaccagac
     1741 tggtgttaaa aaacatcacc aggccgctca ggagcatcaa tgcccctaca acctgagtgc
     1801 tgcgcatttt ctctttcagg ataaatacgc tggcaaccat catgccaact ggcgagagtt
     1861 gcccaatcac ctgcgaagcg gtcggactca ggtattgcaa ggatgagctg aacaggatga
     1921 agttcccaaa cagcccggcg gtcgccactg ccaacaaaat caaccagcgt ggcttacgaa
     1981 acacgcgtaa tggcggcaac ctcttcttca ccgcaagaat ggcacccagg ccaatactcg
     2041 ccatcaagaa acggtaaaac acgattgtcg gaggttccat cacctccagc acctgcttca
     2101 ttgcgattgg caacgccccc cagcaaattg ctgtggtgag cgccaaaaga atgccaatgc
     2161 ctgcctgctg cttcataccg tattccctgc aaagcgcatt tgcggattaa cgtcgcacca
     2221 tgctcatttt taccggttat cgaatgtaaa aagccccgca acgtgttgcg gggctttcat
     2281 ccgttaccgg gacgcgaaaa acttattcag cttcgatgct gataaattta cggtttttcg
     2341 ggcctttaac ttcgaatttc actttaccgt ctgctttagc aaacagagtg tggtcacgac
     2401 cgcaacctac gttagcgcca gcgtggaatt tggtaccacg ttgacgaacg atgatgctac
     2461 ccgccagaac ggattcgcca ccgaaacgct taacgcccag gcgtttagct tctgaatcgc
     2521 gaccgttacg tgtggagccg ccagcctttt tatgtgccat ttgaaatctc tcctcaggtc
     2581 ttaggcgctg atgccagtaa ttttcacatc agtgaaccac tgacgatggc cctgctgctt
     2641 acgatagtgt ttacgacgac gaaacttaac gattttaact ttctcgccac gaccgtgagc
     2701 aacaacttca gctttgatta cgccgccatc aacgaaagga acgccgattt tgacttcttc
     2761 accgtttgcg atcatcagca cttcagcgaa ctcaacagtt tcgccagttg cgatgtccag
     2821 cttttccagg cgaacggtct gaccttcgct tactcggtgt tgtttaccac cactttggaa
     2881 aaccgcgtac atataaaact ccgcttccgc gcacaccttt tcaatgattc agagtgcgct
     2941 ataaatattc acaatagggc gcgaatatta cgcaaaacgc acgtctttga caagtgctac
     3001 agtcaataca cgaagaaaaa aaacacaact tgtacggtaa cgtttatctg tgccattttt
     3061 tcagtacaat caccctatat tcctaaccat aaaccctaag ttgcctttgt tcacagtaag
     3121 gtaatcgggg cgaaaagccc ggcttttgcg atgaatttag aaaaaatcaa tgagttaacc
     3181 gcgcaagata tggcgggtgt taatgcggca atccttgagc agcttaattc cgacgtccaa
     3241 ctgatcaatc agttaggcta ttacatcgtc agcggcggcg gtaaacgtat tcgtccgatg
     3301 attgctgtac tggctgcacg agctgttggc tatgagggaa atgcgcatgt caccattgct
     3361 gccctgatcg agtttatcca cacggcgact ctgctacacg acgacgttgt ggatgaatca
     3421 gatatgcgca ggggtaaagc taccgccaac gctgcatttg gcaatgccgc cagcgtgctg
     3481 gtaggcgatt ttatttatac ccgcgcgttc cagatgatga ccagcctcgg ttcactcaaa
     3541 gtgctggaag tcatgtcaga agctgtaaac gtcatcgcag aaggtgaagt tctgcaactg
     3601 atgaacgtta acgatccgga catcactgaa gaaaactaca tgcgcgttat ctatagcaaa
     3661 accgcgcgtc tgtttgaggc tgccgcgcag tgttccggga ttctggctgg ctgtacgccg
     3721 gaggaggaga aaggcctgca ggattatggg cgctatctcg gcactgcttt ccagttgatc
     3781 gacgatttac tcgattacaa tgccgatggc gaacagttag gtaaaaacgt cggcgacgat
     3841 ctgaacgaag gtaaaccgac gctgccgctg ctgcatgcga tgcatcatgg cacaccagaa
     3901 caggcacaga tgatccgtac cgccatcgaa cagggtaacg gtcgccatct tctggaaccg
     3961 gttctggaag caatgaacgc ttgtggatct cttgaatgga cgcgtcagcg cgccgaggaa
     4021 gaagcagaca aagccatcgc agcgttacag gtgctcccgg acaccccttg gcgagaagca
     4081 ctcatcggcc tcgcgcacat cgctgttcaa cgcgatcgtt aatcccctcc cttcatcccg
     4141 cgcagtgcgc gggatgattc cagtaaattc cataaaaaca ctaattcagc gctataacac
     4201 ctgaaaaaaa aagggcgatg aatctttata tattctgaat attcacactc tttacaggaa
     4261 ctttttagag caataggcca tcaggagtat agtgatgccc gacagaagaa gtgttctgaa
     4321 tgaaagcgac taacttaagg agtgaggaaa gatggaaagt aatttcattg actggcatcc
     4381 ccctgacatc attgcaggtt tgcgcaagaa aggaacgtca atggcggcgg aatctcgcag
     4441 aaatggtttg agttcctcaa cgctggcaaa cgcattatcg cgcccatggc cgaaaggaga
     4501 gatgattatt gcgaaagccc tgggaactga cccctgggtt atctggccat cacgctacca
     4561 tgatccgcag acccatgagt ttatcgacag aacgcagttg atgcgtagct acactaaacc
     4621 gaaaaaatga gtggtctggc ggtagccccg cgaacggggc tgccagctct cagacgatta
     4681 ctcgcctttc acacgcttaa tatttgcacc taaagcgcgc agtttgtctt caatgcgttc
     4741 gtagccacga tcgatgtgat aaatacgatc aaccaccgtc gtcccttccg caatacagcc
     4801 agccagcacc aggcttgctg atgcacgcag atcggttgcc ataacctgtg caccagaaag
     4861 tttttcaaca ccatgacaaa taacggtatt gctttcgatt tcggcatgcg cgcccatacg
     4921 gctaagctcc ggcacatgca taaagcggtt ttcaaagacc gtttcggtga tgaatccggt
     4981 cccttctgcc accaggttca acagcgtgaa ctgggcctgc atatcggtcg ggaatgccgg
     5041 atgcggcgcg gtacgtacgt taacagcctt cggacgtttg ccatgcatat ccaggctaat
     5101 ccagtcttcg ccgacttcga tgtccgctcc agcgtcacgc agtttcgcca gcacggcgtc
     5161 gagagtatct ggctgcgcgt tacggcagat aattttgccg cgagaaatcg ccgccgccac
     5221 caggaaagta ccggtttcga tacgatccgg tagcacgcga tagacaccgc cgcctaaacg
     5281 ttccacacct tcgatgacga tacgatcggt gccctgaccg ctaattttcg cacccagcgt
     5341 aatcaggaag ttcgcggtat cgacgatttc cggttcacgc gctgcgtttt caataatcgt
     5401 ggtaccttcc gccagggttg cagcacacat gatggtcacc gttgcgccaa cgctgacttt
     5461 atccatcacg atatgtgcgc ctttcagacg accatcgacg gaagctttaa cgtaaccttc
     5521 ttccagtttg atggtcgcgc ctaattgttc gaggccagaa atgtgtagat caaccggacg
     5581 cgcaccgatc gtacaaccgc caggcagtga aacttgcccc tgaccaaagc gcgctaccag
     5641 cggccccagt gcccagatag aagcacgcat ggttttaacc agatcgtaag gtgcgcagaa
     5701 tacattaacg tcgcgggcat caatatgcac agaaccatta cgttctactt tcgcacccag
     5761 ctgacttagc agcttcattg atgtatcgac gtctttcagt ttcgggacgt tctggatctc
     5821 taccggttct tccgccagta gagcggcaaa aaggataggc agagcagcat ttttagcgcc
     5881 ggaaattgtg acttcgccct ggagcttcgt tggcccctga acacgaaatt tatccattta
     5941 gtttgttctc agttaacaat tcatatccgc taccggcgaa tcgcccatag ctcaaaagcc
     6001 gttcagtttg cgatcgcgcg cccactccgc aggggtatac gctttgatcg acacagcatg
     6061 aatgcggtta tccgcaatat attccatcag cgggccatag accgtctgct gttttttaac
     6121 ccgactcatg ccgtcaaaca actcacccac ggcaataacc tgaaagtggc tgccatcgcc
     6181 ggaaacgtgg acttcctgga gggagagagc gttcatcaac acgctctgaa tttcattatt
     6241 ttccatggga tcttcaatca tcagttaata aaccagcgaa acatcttaga gcaaagttgc
     6301 gctggcataa ataagcaaaa agcctcgctg ataaatcaga caaggctcga cttgcaggca
     6361 ggtttgccgg acaggcggtt aacgccatat ccggcctgaa aaaatttaac gaggcagaac
     6421 atcagcaggc aaattataca atttcgccag ggtatacact ttgtcgttta ccccctgaag
     6481 cgtcacattg ttgccctgct ttttcgccag atcgataagc tggagcagca gtgccagtcc
     6541 ccccgtatcc acgcgggaca cacggctaag atcgatgcag gtaatcccct tcaccgcttc
     6601 ctcacgcatt tcccaaagcg gtagcaaaac gtcctgatcc agctctccgg ataacgccag
     6661 cgtgtcaccc gtctgcatcc agctcagtga ctcgctcatt attttttctc ttccagagtg
     6721 attttctgtt gagaaatcga tttcagttgc gcagtcaggc cgtcgatacc tttggtacgc
     6781 agcagcgttc cccactcgtt ttgtttggtg gtgatcatac tgacgccttc agcaatcatg
     6841 tcgtaagcct gccagttgcc cgtctgggag tttttacgcc actggaagtc cagacgcacc
     6901 ggcgggcggc cattcggatc aataatggta acgcgaatcg gcacaatggt tttatcgccc
     6961 agcggctgtt ctggcgcaat ctgataggtt tgaccatgat acatcgccag cgcctgaccg
     7021 taagcctgct tcaggtactc acggaaagcg gcaaagtagg cttcacgttg agcaggggtc
     7081 gcactcttgt aatactggcc cagcaccagc gcaccggcgt atttcacctg tacgtatggc
     7141 agcagttcct gatcaacaat ggtacgcaga taatccgggt tggcccgaat ttgcggttgc
     7201 tcattcttca ggcgatcgaa cgttttctgc gccgcctcgt ccatcagctt ataaggattg
     7261 gtctggtctg ccgcggttgc cgcactcagc ggtgcaatca ccagcaaagc gaccatcatt
     7321 aaacgtttaa acatgcgtcg gttctcctga aattatttcg ttgtacccac aggttcagtg
     7381 gtttcattat tacctggcgc agcagctggc gcatcgccac tattcttatt gtcatcgcct
     7441 ttactaccgt aaaggaactg accaatgaga tcttccagca ccatcgcaga cttagtgtcc
     7501 tgaattgtat cgccatcctt caggatagca gtccccagtt ccgggtcttc aaaaccgacg
     7561 tttaatgcca gatattgttc ccccagtagg ccggaagtac gaatgctcag cgaactggta
     7621 tctggaatgt ggttataacg ttgttcaatt tccagcgtta cgcgtggcag ataggttttc
     7681 gggtccagcg taatatccgc cacccggccc acaacaacgc caccaatact gaccggagag
     7741 cgcgctttca ggccgccaat gttatcgaac gtcgcataaa gcgtgtaggt cggttcagta
     7801 cgtatggacg tcacgttcgc cgccttcagg caaacaaaca gagccgccag cagtgctgct
     7861 aataaaaaga tacccaccca aatttcattt tttttcgttt gcatgtactc aattcccaaa
     7921 catcaatgcg gtcagcacaa aatccagccc cagaacagcc agagacgagt ggacaacggt
     7981 gcgagtggtt gcccggctaa tcccggcaga cgtcgggatg gcgtcgtagc cgttaaacaa
     8041 cgaaatccac gtcaccgtga tggcgaacac cacgctctta atcagacagt tgaccagatc
     8101 catacgccag tcgacggcat tttgcattgc cgaccagaag aacccgctat caatgccttt
     8161 ccaactgacg ccgaccagag atccgcccca gatccccacg gcgacgaaaa taaccgtcaa
     8221 cagtggtaat gaaataaccc cagcccagaa acggggagaa ataacccgac gcagcggatc
     8281 caccgccatc atctccatac tggagagttg ctctgtagcg cgcatcaggc cgatttctgc
     8341 ggttagcgcc gaaccagcac gcccggcaaa caacaacgcg gcaaccaccg gccccagttc
     8401 acgcagtagc gataacgcca ccagcatacc cagactggtt tccgcactat aagtggtcag
     8461 aaccagataa ccttgcagcc ccaacaccat tccgatgaac acgccagaaa ccacaataat
     8521 cagcatcgac aggacgccga cattatagag ctggcgcacc agcagcggcg catgtttgcg
     8581 aaattccggt ttgccgacca gcgcattgaa taacattaac ccggcccgcc cgaacgttct
     8641 cagggtttta atccctttat gtccgagcga cgccagcgca tttaacagca tgagtggctt
     8701 aactccctgg taaaagatca gcgtgataat cgccggcagg atagcggaac ggaacaggcc
     8761 cgtcagctat cccgtccaga aactgacgta cgcgcggatc aggattcgcc tgcaacgcct
     8821 gggcactgcc atgagcgaca atttttttgt ccgccaggat ccaggcgtga tccgcaatac
     8881 ttaacacttc cggcacatcg tgagaaacca ccacacaagt cacgcccagc gcgctgttca
     8941 gctcagaaat cagcttcacc agtacgccca tggtgatggg atcttgccca acaaaaggtt
     9001 catcaaacat gatgagatcc ggctccagcg caatcgcacg cgccagcgct gcacgccgcg
     9061 ccatcccacc ggaaagttca gaaggcatta gtttagccgc tccacgcagc cccacggcct
     9121 ccagcttcat catcaccgta ctatgcaaca atggcgcggg aagttgggta tgttcgcgca
     9181 gtggataggc gacgttgtca aatacgttca tatcagtgaa caacgccccg gactgaaata
     9241 acatgctcat ccgtttgcgc actgtataca ggcgcgaacg agacatcgcc ggaatattct
     9301 caccatcgaa aaggatctca ccatgatctg gtgcgatttg cccgccaatc agacggagta
     9361 gcgtcgtttt accgatgccc gatggcccca tgatcgccgt gatcttccct cgcggcacgg
     9421 tcagggaaat attatcgaag atgcagcgat tgccacgcgt aaaactgaca tcgcgcatat
     9481 cgactaaatt cgccacagac tgctccataa ttcacccttc gtcttgcgtt gattttctaa
     9541 gcatggcgct caatttaacc ttgaacccaa catatttaca gaatattacc cgccgtggtt
     9601 agcgaaagct ggcatttgtt ttacttttta gccgcataaa gtcaaaatta agaatccgtt
     9661 acggctttct gaaaatcttc agcggaccgg cgagtatacc tgaagaaagg acgttagatg
     9721 cttttagcta cggcactgtt aattgttggt ttacttttgg tcgtttacag tgccgaccgc
     9781 ctggtttttg ccgcgtctat tctttgccga acctttggca tcccgccgct gatcatcggc
     9841 atgacggtgg tcagtattgg tacatcgtta ccagaaatca tcgtctcgct tgccgcgtct
     9901 ctgcacgaac aacgcgattt agccgttggt acagccctcg gctcaaacat tatcaatatt
     9961 ttgctgatcc tcggtctggc tgcgctggtt cgtcctttta ccgtccattc cgatgttctg
    10021 cgtcgtgaat tacccttaat gttgttggtc agcgtagtgg ccggttccgt actctatgac
    10081 ggacaactta gtcgcagcga tggtatcttt ctcctctttc tggctgtgct atggctgctg
    10141 ttcattgtta aacttgcacg tcaggctgaa cgtcagggga ctgacagcct gaccagagag
    10201 cagcttgcag agctgccgcg tgacggcgga ttgcccgtcg cgtttttatg gctcggcatt
    10261 gcgcttatca tcatgccagt ggccacgcgg atggtggttg ataacgccac ggtgctggcg
    10321 aattactttg ccatcagcga gttgacgatg ggtctgacgg caattgctat cggaaccagc
    10381 ctgccggaac tggcaaccgc aatagcgggg gttcgcaaag gtgaaaacga cattgctgtc
    10441 ggaaatatca ttggcgcaaa catttttaat attgtcatcg tgttgggttt acccgcgctg
    10501 ataacaccag gagagattga tccattggcg tacagtcgtg actacagcgt gatgttgctg
    10561 gtgagcatta tttttgcgtt gctgtgctgg cggcgctccc cgcaaccggg ccgtggtgta
    10621 ggggtattat taactggcgg atttatcgta tggctggcga tgttgtactg gttatcgcca
    10681 atactcgttg aataactgga aacgcattat gtcgcacgta gagttacaac cgggttttga
    10741 ctttcagcaa gcaggtaaag aagtcctggc gattgaacgt gaatgcctgg cggagcttga
    10801 tcaatacatc aatcagaatt tcacgcttgc ctgtgaaaag atgttctggt gtaaagggaa
    10861 agttgtcgtc atggggatgg ggaaatcggg gcacatcggg cgcaaaatgg ccgcaacgtt
    10921 tgccagcacc ggtacacctt catttttcgt ccatcctggt gaagccgcgc atggtgattt
    10981 aggcatggtc accccacagg atgtggtgat tgctatctct aactcaggtg aatccagcga
    11041 aatcacggcc ttaattccag tgcttaagcg tcttcacgta ccgttaatct gcatcaccgg
    11101 tcgcccggag agcagcatgg cgcgcgccgc agatgtgcat ctgtgtgtta aagtagcgaa
    11161 agaagcctgt ccgttagggc tggcaccgac cagcagcacc accgccacgc tggttatggg
    11221 cgatgccctc gctgtcgcgc tgttaaaagc acgcggcttt actgctgaag attttgcgct
    11281 ctcacaccca ggcggcgcac tgggtcgtaa acttctgctg cgcgtaaacg atattatgca
    11341 tacgggcgat gagatcccgc atgttaagaa aacggccagt ctgcgtgacg cattgctgga
    11401 agttacccgc aaaaatcttg gtatgactgt catttgcgat gacaatatga tgattgaagg
    11461 catctttacc gacggtgatt tacgccgtgt cttcgatatg ggagtggatg ttcgtcagtt
    11521 aagtattgcc gatgtgatga cgccgggggg aatacgcgtg cgccctggca ttctggccgt
    11581 tgaggcactg aacttaatgc agtcccgcca tatcacctcc gtgatggttg ccgatggcga
    11641 ccatttactc ggtgtgttac atatgcatga tttactgcgt gcaggcgtag tgtaaagatt
    11701 caaggataaa caacaatgag caaagcaggt gcgtcgcttg cgacctgtta cggccctgtc
    11761 agcgccgacg ttatagcaaa agcagagaac attcgtctgc tgatcctcga cgttgatggc
    11821 gtactgtcag atggcctgat ttatatgggc aataacggcg aagagctgaa agcgttcaat
    11881 gttcgtgacg gttatggcat tcgttgtgcg ctcacctctg atattgaagt cgctatcatt
    11941 accgggcgaa aggctaaact ggtagaagat cgttgtgcca cattggggat cactcacttg
    12001 tatcaggggc agtcaaacaa actgatcgcc tttagcgaac tgctggaaaa actggcgatt
    12061 gccccggaaa atgtggctta tgtcggcgat gatctcatcg actggccggt aatggaaaaa
    12121 gtgggtttaa gcgtcgccgt ggccgatgct catccactgt tgatcccgcg cgccgattat
    12181 gtgacgcgca ttgctggcgg tcgtggcgca gtgcgagaag tttgcgactt attactcctg
    12241 gcgcagggca aactggatga agccaaaggg caatcgatat gagtaaagcc agacgttggg
    12301 ttaccattgt gctatcactg gcggttctgg tgatgatcgg cattaatatg gccgaaaaag
    12361 acgataccgc ccaggtggtc gtcaacaaca atgatcccac ctataaaagc gagcatacgg
    12421 acacgctcgt ctataaccca gaaggggcac taagctatcg attgattgct caacacgttg
    12481 aatattattc cgatcaggcc gtttcgtggt ttacgcagcc ggtacttacc acgtttgata
    12541 aggataaaat cccgacatgg tccgtaaaag cagataaagc caagctgacc aatgaccgga
    12601 tgctctattt atatggacac gttgaagtca acgcacttgt gccggactct caacttcgca
    12661 gaatcacgac ggataacgcg cagatcaatc tggtgacgca ggatgttacc tctgaagacc
    12721 tcgtcacgtt atacggaaca acatttaact ccagcggtct gaaaatgcgc ggcaacttac
    12781 gcagcaagaa cgccgagctg attgaaaagg ttagaacatc ctatgaaatt caaaacaaac
    12841 aaactcagcc ttaatcttgt gcttgccagc tcacttctgg ccgccagcat tccggcattt
    12901 gccgtaaccg gagacactga tcagccgatc cacattgaat cggaccagca atctcttgat
    12961 atgcaaggca acgtggttac ctttaccggt aatgtcatcg tcacccaggg caccatcaaa
    13021 attaatgccg acaaagtggt cgttacccgt ccgggcggcg aacaaggtaa agaagtgatt
    13081 gacggctacg gtaaaccggc aacgttctac cagatgcagg acaacggtaa acccgttgaa
    13141 ggtcatgctt cccagatgca ctacgaactg gcaaaagatt ttgtcgttct gacgggtaat
    13201 gcttatctgc agcaggtcga tagcaacatt aagggcgata agatcactta cctggtgaaa
    13261 gagcagaaaa tgcaggcttt cagcgacaaa ggcaagcgcg taacaaccgt tctggtgccg
    13321 tcgcagctgc aggacaaaaa caacaaaggc cagaccccgg cacagaagaa gggtaattaa
    13381 ttcgttatgg caacattaac tgcaaagaac cttgcaaaag cctataaagg ccgtcgcgtg
    13441 gtagaagacg tcagcctgac cgtcaactcc ggggaaattg tcggtctgct ggggccaaac
    13501 ggtgccggta agaccaccac tttctatatg gttgttggca ttgtgccgcg cgatgcgggc
    13561 aacatcatta ttgatgatga cgatatcagt ctgctgcctc tgcatgcacg cgcgcgccgc
    13621 ggtatcggct atctgccaca ggaagcctcc attttccgtc gcctcagcgt ttacgataac
    13681 ctgatggcgg tactgcaaat tcgtgacgac ttgtctgctg aacaacgtga agaccgcgcg
    13741 aacgagctga tggaagagtt tcacattgag cacctgcgtg acagcatggg gcagtcactc
    13801 tccgggggtg aacgtcgccg tgtagaaatt gcccgcgcac tggctgcgaa tccgaaattt
    13861 attctactcg acgaaccgtt tgccggggtt gacccgatct cggttatcga cattaaacgc
    13921 atcattgaac acctgcgcga cagcggcctg ggcgtactga tcactgacca caacgtgcgt
    13981 gaaacactgg cggtttgtga acgcgcttat atcgtcagtc aggggcattt gattgcccac
    14041 ggcacgccta cagaaatctt acaagacgaa cacgttaagc gtgtatacct tggggaagac
    14101 ttcagactct gatagggtag aagtttgcga cgttttagca ggagagtacg attctgaaca
    14161 tgaagcaagg tttgcaactc aggcttagcc aacaactggc gatgacgcca cagcttcaac
    14221 aggcgattcg tctgttgcag ttgtcgacgc tggaacttca gcaggagcta cagcaggcgc
    14281 tggagagtaa tccgctgctt gagcaaatcg acactcatga agaaatcgac accagcgaaa
    14341 cgcaagacag tgaaacgctg gacaccgccg acgcgctcga acaaaaagag atgccggaag
    14401 agctgccgct cgatgccagt tgggacacca tttacaccgc tggtacacca tccggcacca
    14461 gcggtgacta cattgacgat gagctgccgg tctatcaggg cgaaacgacg cagaccttgc
    14521 aggattacct gatgtggcag gtcgagctga caccgttttc cgacactgac cgcgctattg
    14581 ctacctctat cgtcgatgcc gttgatgaca ccggttatct gactgtcccg ctggaagata
    14641 ttctcgaaag tatgggcgat gaagagatcg acatcgacga ggttgaagcc gtccttaagc
    14701 ggatccaacg gtttgatccg gtcggtgtag cggcaaaaga tctgcgtgac tgcctgctaa
    14761 tccaactctc ccaattcgat aaaaccacgc cgtggctgga agaggccaga ctgatcatta
    14821 gcgatcatct cgatctgtta gccaatcacg acttccgcac tttaatgcgc gtcacgcgtc
    14881 tgaaagaaga tgtgctgaaa gaagccgtca atctgatcca gtcgctcgat ccgcgccccg
    14941 ggcagtcgat ccagactggc gaacctgagt atgtcattcc agatgtgctg gtgcgtaagc
    15001 ataacggtca ctggacggta gaactcaaca gtgacagcat tccgcgtctg caaatcaacc
    15061 agcactacgc ctcgatgtgc aataacgcgc gcaacgatgg tgacagccag tttatccgca
    15121 gcaatctgca ggatgccaaa tggttgatca agagtctgga aagccgtaac gatacgctac
    15181 tgcgcgtgag tcgctgtatc gttgaacagc agcaagcctt ctttgagcaa ggtgaagaat
    15241 atatgaaacc gatggtactg gccgatatcg cccaggctgt cgaaatgcat gaatcgacga
    15301 tatctcgcgt gaccacgcaa aaatacctgc atagtccacg aggcattttt gaactgaagt
    15361 atttcttttc cagtcacgtc aataccgagg gcggcggcga agcttcctcc acggcgattc
    15421 gtgcgctggt gaagaaatta atcgcggcgg aaaacccagc gaaaccgttg agcgacagca
    15481 agttaacctc tttgctgtcg gaacaaggta tcatggtggc acgccgcact gttgcgaagt
    15541 accgagagtc tttatccatt ccgccgtcaa accagcgtaa acagctcgtt tgacccaacc
    15601 gataaggaag acactatgca gctcaacatt accggaaata acgtcgagat caccgaggca
    15661 ctgcgcgaat ttgttagagc caaatttgcc aaacttgagc aatattttga ccgaatcaac
    15721 caggtctatg ttgttctgaa agtggagaaa gtcacccaca cctcagatgc aacactgcat
    15781 gtaaacggtg gtgaaattca tgccagcgcg gaaggtcagg acatgtacgc tgccattgat
    15841 ggcttaattg ataagctggc acgccagttg accaaacata aagataaact gaaacaacac
    15901 taattgtccg ggcaattagc atgtgcatgg cggcctgttg tgcggcacaa cgggccattt
    15961 gtacggttaa tgctccgagc ctgttccact gtttgagtgg gcaggttctt aggtgaaatt
    16021 atgacaaata atgatacaac tctacagctt agcagtgttc ttaacaggga atgtacgcga
    16081 agccgcgttc actgtcagag caaaaaacgc gccctggaaa tcatcagcga gctggcggcg
    16141 aaacaactta gcctgccgcc tcaggtggtt tttgaagcta tcctgacgcg ggaaaaaatg
    16201 ggcagtaccg gtatcggcaa tggtattgcc attccgcatg gcaaactgga agaagatact
    16261 ctgcgcgccg ttggcgtttt cgttcagctc gaaacgccta tagctttcga tgccatcgac
    16321 aaccaaccgg tggacttact ttttgccctg ctggtgccgg cagaccaaac taaaacgcac
    16381 ctgcatactc tgtcgctggt ggcgaaacgt ctggcggaca aaaccatctg ccgccgttta
    16441 cgcgcagccc agagcgatga agagctgtat caaatcatta cggataccga aggtactccg
    16501 gatgaagcgt agttattcgg taatgtctct tttagacgtt gtgaggagaa acagtacatg
    16561 gtactgatga tcgtcagcgg acgttcaggt tcaggtaaat ctgtcgccct gcgtgcgctg
    16621 gaagatatgg gtttttactg cgtggataac cttcccgtag tgttgttacc cgatctggct
    16681 cgaaccctgg ccgatcgcga gatttctgcc gccgtcagca ttgatgttcg taatatgccg
    16741 gagtcaccag aaatattcga acaggcgatg agtaacctgc ctgacgcttt ctcaccgcaa
    16801 ctcctgttcc tggatgccga ccgtaatacc ttaattcgtc gttacagtga cacgcgccga
    16861 ctgcatccgc tttccagcaa aaacctgtcg ctggaaagtg ctatcgacaa agaaagcgat
    16921 ttgctggagc ctctgcgttc gcgagcggat ctgattgtcg atacctcaga aatgtccgtt
    16981 cacgagctgg ctgaaatgct gcgtacccgt ctgctgggta aacgtgaacg cgaactgacc
    17041 atggtctttg agtctttcgg cttcaaacac ggtatcccta tcgatgcaga ttacgtcttt
    17101 gacgtgcgct tcttgccgaa cccgcactgg gatccgaaac tgcgtccaat gacaggtctt
    17161 gataaacctg tcgccgcgtt cctcgaccgc cacacagaag tacacaattt tatctaccag
    17221 acgcgaagct atcttgagct atggttacct atgctggaaa ccaacaaccg tagctacttg
    17281 acggtcgcca ttggttgtac cggcgggaag caccgttcgg tgtatattgc agagcaactg
    17341 gcagactact tccgctcgcg cggtaaaaac gtccagtcac gccatcgtac gctggaaaaa
    17401 cgtaaaccat gaccgtcaag caaactgttg aaatcacaaa caagctgggc atgcatgccc
    17461 ggcctgcaat gaagctgttt gaattaatgc agggttttga cgctgaagtg ctgttacgta
    17521 atgacgaagg caccgaggcc gaagccaaca gcgttattgc gctgctgatg ttggattctg
    17581 ccaaaggacg gcagattgaa gttgaagcga ccggcccaca ggaagaggaa gcactggccg
    17641 ccgttatcgc cctctttaac tctggttttg atgaagatta atcttcatca ctttgacata
    17701 caactccctt caaactcccc ccgacaataa gaaaatcacg tactgaaatc gttctcaatc
    17761 aacgtcattt gtacattttg tgcgcttttc actttcagaa gaaccttaag aaaaccttaa
    17821 gaggcattgt ttaggttttg tttaagttaa tcgaccatac tggagatcgt cagaaaatat
    17881 ttccaggaga tggcatgatt cgcttatctg aacaaagtcc cctgggcacc ggaagacatc
    17941 ggaaatgtta tgcgcatccg gaagatgccc aacgctgtat caagattgtc taccatcgtg
    18001 gcgatggtgg cgataaagag atccgccgtg agttaaagta ctacgcgtat cttggtcgcc
    18061 ggttaaaaga ctggagtgga ataccgcgct atcacggtac cgttgagacg gattgcggaa
    18121 ccggttatgt ctacgatgtg attgcagatt ttgacggcaa accctccatt acgctgaccg
    18181 aatttgctga acaatgccgt tacgaagaag acattgcaca actgcgccag ctactgaaac
    18241 agctgaagcg ttatttgcag gataaccgta tcgtgacgat gtcgctgaag ccgcagaata
    18301 tcctctgcca ccacatcagt gagtcagagg ttatcccggt cgtctgcgac aacattggtg
    18361 aaagcacatt gattccactg gcgacctggt cgaagtggtg ttgtctgcgt aagcaagagc
    18421 ggttatggaa acgatttatc gcccaaccgg cgctggctat tgccctgcag aaagatctgc
    18481 aacctcgtga gagcaaaacg ctggccctca cttcgcgcga agcttaatcc agctggtgtt
    18541 gttgcataaa cggctcaccg cctaactgat acatctgccg taaaatccac gcctgacggc
    18601 tacgcacgta gcccgatggc gaggagactt tgaaacgaag tggattaggt aatacagctg
    18661 ccagtaatgc agcttccgac cgggtaagtt tgctcgcggg tttgtggaaa taacgttgtg
    18721 ccgcagcttc gacgccaaac acaccgtcgc caaattcggc gatattcagg taaaccgtca
    18781 ggatacgctt tttgctccag actgtttcta tccccagcgt taatccagct tccagccctt
    18841 ttcgtaccca gctacgccca tcccataaaa agagattttt ggccgtctgc tgagaaatcg
    18901 ttgaagcacc gcgaatacgg ttttcattgc gctcgttgtg cgccagggct ttctcaatgg
    18961 aagcgacatc aaagccccgg tgctcaggaa atttctgatc ttctgcggca atcaccgcca
    19021 gtcccatcca cggcgagatt tgatccatac tgacccagtc agaatgtgcc acgtaacgaa
    19081 aattgccatg cagccaggcg ctgacctgtc gctcgaccat taccgctgag aagggaacag
    19141 gcgcaacact aaacaacgcg atgcccccgc cccagaaaac ggcgaggaca accattaacc
    19201 gcaaaagaaa acggcgaacg aaactaaaca ccgttaagcg gcttttactc attcagccag
    19261 aaccagcacg cgggaaacca gcttatcaat gccgctcgcc gcttctgcaa tgttctgcgc
    19321 cagcatatat gctggggtgg tgacaatctt attgtcttca tcaaccacga tatcatcgac
    19381 aggacagggc acatgctccg cgcccatctc ttccagcact tctgcggtat cgatatcagt
    19441 accgatggtc aaacgcagcg ggaaatcgaa aattttcggc agcatcgccg gggcaataca
    19501 cataaaacca agcggttttc cggcctgatg catcgcttgt gccagcgcct ttaattcacg
    19561 gtcaacggtg cattcgctac caagagtggc aaaattgctt aaattcttcg ccgcgccaaa
    19621 cccccccggc acaatcaacg catccagttc agcggcatcg gcctgggcca gaggacggat
    19681 ttcaccgcgc gttattcgtg ccgcttcaat cagcacgttg cgcgtttccg tcatcgcttc
    19741 gccagttaaa tggttgataa catcaacctg ctgcttatca ggtgcaaagc agaccgcctg
    19801 cgcaccgctg cgtgaaatag ctaacaacgt caacaccgct tcatgaattt cagaaccgtc
    19861 atagacgccg catccgctca gaattacgcc aattttcttc attgtgatca tcctttcgca
    19921 attgactgaa acacattaat ttttttaata aaaatggtac gcatcacaca tttaactgat
    19981 tcatgtaaca aatcatttaa gttttgctat cttaactgcg tgcggcctga aaaacagtgc
    20041 tgtgcccttg taactcatca taataattta cggcgcagcc aagatttccc tggtgttggc
    20101 gcagtattcg cgcaccccgg tctagccggg gtcatttttt agtggctttt gccacccacg
    20161 ctttcagcac ttctacgtcg tgacgccact cttctttcat ctcttcaatc cattcaccga
    20221 cgttatcttc ccaggcagga aggtcaggag actgaatttg ctgacccagc tgttgcagat
    20281 ggcgtaaccc cactgacccc gccgcacctt taattttatg tccttcctca acaatgcctt
    20341 ttttatcctg cgccgtcaga ttcgactcca gcacgctgac atagcccggc atcatcttct
    20401 caaacaccgc taacccgtcg gtgatcagct tcggtcctac aagttcgaga tactgttcca
    20461 gcatgggaat atcgagcaat gcttctgatt tactgttctc ttctgtcgtc accgtactct
    20521 cctcatcatc ctgggtatcc cagaatttct tgatcatcgc ggttagcgcc ggaaccgaaa
    20581 gcggcttact cagcacatca tccattccag cattgaggta ctcttgtttg tctttcagca
    20641 cgttagcggt taaggccacc agcggcggta aatcctcgcg cggataacgc ttcgtcagtt
    20701 cacgagagat atccagcccg gtcatatctg gcaactgaat atccagcaac accaggtcgt
    20761 attcgcccgg tttaaacatc tccagcgccg ccttgccggt catggcgaca tcaacgctgt
    20821 tacctaattt ttccagcaca gaacgcgcaa caatcacgtt cagttcaatg tcttccacca
    20881 gcagcacatt cagcgccggt aaaggcatat cgtcttcatc aaacgcatca tcgacctctt
    20941 ctgctaccga cggtgcgtgg atcgtcaacg taaaggttga acctttgccc tgttcgctgg
    21001 taaccgtaat atcgccgccc atatttttcg ccagacgacg agaaacggcc agaccaatac
    21061 cggtgccggt ggcaggttta ccgccatgac tgtctttcac ctggtaatac atggcgaaaa
    21121 ttttatccag ctcatcctgc ggaatgccga taccagagtc ttccacttca aaatgcagca
    21181 tatcgccttc atcgtagcgc acgcgcacgg taacctggcc ttgctgggtg aatttgacgg
    21241 cgttactgat gaggttccac aggatctgcc gtaaacgcgt cccgtcggta atgacctgat
    21301 gcggtaatgg cagcgtcggc tccaggttaa agcgcaatcc tttttgttgc gcctgcaatg
    21361 cggagagatt ttccagatcg gcaaggaagc tggtgaaatc aaccggttga ttatcaagct
    21421 ggaccttgcg ccgttccatc ttatccatgt cgataatatc gttaaagata ttccccagcg
    21481 tgacggccga aacatggatg gtcttgagat atttttcctg ctcggcggtg agttcggtat
    21541 ccagcagaat gcggctcaga ccgacgatac cgttcagcgg tgtacgcaat tcgtgactga
    21601 tggtggagat aaacgtcgtt ttgtcgcggc tggcccgttc aagcgcatcc tgataccgct
    21661 tacgctcggt aatgtcgcga ccaaagccca tcaaaccgtg acgtttaccc acgcggtcgt
    21721 agtacggcac tttacggatt tcaaagcagg ctttgcgccc gtccgggtaa tccagccact
    21781 gttcataggt cagtgacaca ttatgacgga acactttttc atcggtttca atgacttttg
    21841 cggcggcttc cggtgagtaa acatcagcag gtttcaggtg aaccagttgt ttttcgcttt
    21901 ttccggtcag cagctccatc gcgcggttac agccggaaaa ctctttatct tcgttacgat
    21961 aaaaaaccag gtcgggtgaa gcatcaagga aggaacgtaa gaatgaggat tgctgctcga
    22021 gctgaatttg tgtctcttcg cgctctttga tttcaatttt cagttggccg aaggtttcct
    22081 gcagttctgc ttccgctttt tcacgaacgg caatttcctg atttagctgg gcaatattat
    22141 cttttaactg aacgttgagg ctcaaatcgc gctcgcgcat ctcctccagt ttttgcacca
    22201 gccgtgacag acgttgtcgt gactcctcca gttgctcgac gaccaccgat agaaagtaga
    22261 ccgcccacgg cgtaatcagc aaaccaaaga agatagaacg aataacatca atgctttcga
    22321 cctgaccatg cagcaccatg gttaccgcca tttgtaccac aatggcaaga acgacgaggg
    22381 ccagcgccag caacattgag aagcgcacca gacctaactt catcatcagg tcaacataat
    22441 actgcgccag cagacgaatt tgcttcatta gggaattcct tcacgacaac ctgccccaat
    22501 aatacccaat tctgacagtt acgttataaa ttgtgtgaga aatgcggaat tcccctcaac
    22561 gacctactcc gttggaggta gccacggacg tcccagcgcc gatccctgta cgccatgttc
    22621 attcagatag cgatccagct cgaccattcc cgtccatcga ttttcgcacc acagcggagc
    22681 aagcagcgtc gggcgacggg cgctggcgga aatgcggtgg tagatcactt ccggtggcgt
    22741 atggcgaatc atttctccgg cagtgagcgt gtaatcctcc agttcaatac cgttcaaacg
    22801 ccccgcttcc caggctttcg ccataatgct gcctttcaca atatgcagcg gatgcagctt
    22861 tatgccgtcc acgccggttt caaccactcg ctccagcgtt tgcaaacatt cagcctgccc
    22921 ttcaccaggc aggccgacaa ttaagtggga acacaccttc agcccgcgct gacgtgccag
    22981 ctgggttgta cgctgataac aggcaaaatc atggccgcgg ttgatgcgat gcagtgtttt
    23041 gtcgtgggcg gtttgtagcc ccagctccag ccacacttcg taaccctggt ccttatattc
    23101 gcaaagcaga tccagcaccg catccggcac gcagtccggg cgggtaccaa cacacaaacc
    23161 gacaatattg gcctggctca ccgcctgctg atacatagaa cgcagcacct gaacttccgc
    23221 aaaggtgcta gtatacgcct gaaagtaggc cagatagcgt ttagcgcggt taactaaatt
    23281 cgcctggtgc gccagttgct cggcaatgga acgatgctgc tgcgcttcat cggcaaacga
    23341 ggcaacatta cagaatgtgc agccaccacg cccgatggta ccgtcacggt tagggcagct
    23401 aaaaccgccg tgcagcgtca gcttatgcac cttttgccca taacgacggg tgagatcacc
    23461 accaaacata ttgactaatt tctgtaactg cataatctga tagaccgcgc cttgaaaaga
    23521 ggccaaagcc tgccattttt agctcaattc ggcgatgacc tggatcaatc gtcccggcct
    23581 gcttttatca actgcataat caatcaaaat taccgaaatt tcatgcataa tcacataaat
    23641 cacttttgct tatcttgtgt cagatttttt tatctcctta tggattttag gcaaaaacag
    23701 tagcatgaaa cgtcattacc aattaaggca gtataaaatg ctggttttct cgtcagttca
    23761 aggtaggata agggttaaca cgcctttatg acagtcagga attgactgtt tctctaacga
    23821 cttccctttt agccttaaag ataaaattca ttttaatttc agttacttaa taaagaattt
    23881 tgcgctaaag cacatttctg taccaataag cttgccattt gacctgtatc agctttcccg
    23941 ataagttgga aatccgctgg aagctttctg gatgagcagc ctgctcatca tatttatgca
    24001 gtaattgaga tcccctcttc accgtattaa ccgatgcgaa aaggacaaca agggggcgaa
    24061 tacgaggcgc gcgtatgaca cgcaaccccc gtcgccacgc tctttctgtg cccgtgcgca
    24121 gcggttcgga agtggggttc ccgcagagcc tgggggaggt tcacgatatg ttgtacgata
    24181 aatcccttga gagggataac tgtggtttcg gcctgatcgc ccacatagaa ggcgaaccta
    24241 gccacaaggt agtgcgtact gcaatacacg cactggcccg catgcagcac cgtggcgcga
    24301 ttctcgccga tggtaaaacc ggtgacggtt gcggcttgct gttacaaaaa ccggatcgct
    24361 tttttcgcat cgttgcgcag gagcgcggct ggcgtttagc aaaaaactac gctgtcggga
    24421 tgctcttcct gaataaagat cctgaactcg cggctgccgc acgccgcatc gttgaagaag
    24481 agctgcaacg cgaaaccttg tcgattgtgg gctggcgtga tgtccccact aacgaaggcg
    24541 tgctgggtga aatcgccctc tcctctctgc cccgcattga gcaaattttc gttaacgctc
    24601 cggcaggctg gcgtccgcgg gatatggagc gccgtctgtt tatcgcccgc cgccgcattg
    24661 aaaagcgtct cgaagccgac aaagacttct acgtctgtag cctgtcgaat ctggtgaaca
    24721 tctataaagg tctgtgtatg ccggcggatc tgccgcgctt ttatctggat cttgcggacc
    24781 tgcgtctgga atcggccatc tgcctgttcc accagcgctt ctccactaac accgtaccgc
    24841 gctggccgct ggcgcagccg ttccgctacc tggcgcataa cggtgaaatc aacaccatca
    24901 ccggtaaccg ccaatgggcg cgtgcgcgta cctataaatt ccagacgccg cttatccctg
    24961 atctgcacga cgccgcaccg ttcgtcaacg aaaccggctc tgactccagt tcgatggata
    25021 acatgctgga actgctgctg gcaggcggga tggatatcat ccgcgccatg cgtctgttag
    25081 tgccacccgc ctggcagaac aacccggata tggacccgga actgcgtgcc ttctttgact
    25141 ttaactccat gcatatggag ccgtgggatg gcccggcggg catcgtgatg tccgacggtc
    25201 gttttgccgc ctgtaacctc gaccgtaacg gtctgcgtcc ggcgcgctac gtcatcacca
    25261 aagataagct catcacctgc gcctctgaag tcggtatctg ggattaccag cctgacgaag
    25321 tggtcgaaaa aggccgcgtc gggccaggcg aactgatggt tatcgacacc cgcagtgggc
    25381 gtattctgca ctcggcagaa accgatgacg atctgaaaag ccgccatcca tataaagagt
    25441 ggatggagaa aaacgtccgc cgactggtac cgtttgaaga tctgcccgat gaagaagtgg
    25501 gtagccgcga attggacgac gacacgcttg ccagctacca gaaacagttt aactacagtg
    25561 cggaagagct ggactccgta attcgcgtac tgggcgaaaa cggtcaggaa gcggtcggtt
    25621 cgatgggcga tgatacccca ttcgccgtgc tctccagtca gccgcgcatt atttacgact
    25681 acttccgcca gcagtttgcc caggtgacta acccgccaat cgacccgctg cgtgaagcgc
    25741 atgttatgtc gctcgccacc agtatcggtc gtgaaatgaa cgtcttttgc gaagcagagg
    25801 gccaggcgca ccgtttaagc tttaaatcgc cgattctgct ctactccgat ttcaaacagc
    25861 tcacgacgat gaaagaggag cactaccgcg cagatacgct ggatatcacc tttgacgtca
    25921 ctaaaaccac gctcgaagcg acagtcaaag agctgtgcga caaagccgaa aaaatggtac
    25981 gtagcggcac cgtgctgctg gtgctctccg accggaatat cgctaaagat cgcctgccgg
    26041 ttccagcccc gatggcggtt ggcgcgatcc agacccgtct ggtcgatcaa agcctgcgtt
    26101 gcgatgccaa catcatcgtc gaaaccgcca gcgcccgcga tccgcaccac ttcgccgtgt
    26161 tgctgggctt cggcgcgacg gctatttatc cataccttgc ctatgaaacg ctgggccgcc
    26221 tggtagacac ccatgcgatt gccaaagatt atcgtaccgt gatgctcaac taccgtaacg
    26281 gcatcaacaa aggcttgtac aaaatcatgt ccaaaatggg catctccacc atcgcctctt
    26341 accgctgctc gaaactgttt gaagcggtcg gtctgcacga tgatgtagtg ggcctgtgct
    26401 tccagggggc ggtcagccgc attggtgggg cgagctttga agacttccag caggatctgc
    26461 tgaacctgtc gaaacgtgcc tggctggcgc gtaagcccat cagccagggc ggcctgctga
    26521 aatacgtcca cggcggcgaa taccacgctt acaacccgga cgtggtgcgc acgctgcaac
    26581 aggcggtaca aagcggcgag tacagcgact atcaggaata cgcgaagctg gttaatgagc
    26641 gtccggcaac cacgctgcgc gatctgctgg caattacgcc gggtgaaaac gcggtcaaca
    26701 ttgctgatgt tgaaccggca agcgaactgt ttaaacgctt tgataccgcc gcgatgtcta
    26761 tcggcgcgtt aagcccggaa gcccacgagg cgctggcgga agcgatgaat agcatcggcg
    26821 gtaactcgaa ctccggtgaa ggcggcgaag acccggcgcg ctatggcact aacaaagtgt
    26881 cgcgcatcaa gcaggtggct tctggtcgct tcggcgttac tccggcgtat ctggtcaatg
    26941 ccgacgtcat tcagattaaa gtcgcccagg gcgcgaagcc gggcgaaggc ggtcagttgc
    27001 cgggcgacaa agtcactcct tacatcgcca aactgcgcta ttcggtgccc ggagtgacgc
    27061 tgatctcccc gccgccgcac cacgatatct actctatcga ggacttagcg cagctcattt
    27121 tcgacctcaa gcaggttaac ccgaaagcga tgatctccgt gaagctggtt tccgaaccgg
    27181 gcgtaggcac catcgcgact ggcgtggcaa aagcttatgc cgatttaatc accatcgcag
    27241 gctatgacgg tggcaccggc gcaagcccgc tgtcgtcagt gaaatacgca ggttgcccgt
    27301 gggagctggg gcttgttgaa acccagcagg cgctggttgc caatggtctg cgtcataaga
    27361 tccgtttgca ggtcgatggc ggcctgaaaa ccggtgttga tatcatcaaa gcggcgattc
    27421 tcggcgcaga aagcttcggc ttcggcactg gcccaatggt cgcgctcggc tgtaaatatc
    27481 tgcgtatttg ccacctgaac aactgcgcaa cgggtgtggc aactcaggat gacaaactgc
    27541 gtaagaatca ctatcacggc ctgccgttca aggtgacgaa ttactttgag tttatcgccc
    27601 gtgaaacccg cgagctgatg gcacagctgg gggtaacgcg gctggtggat ctgattggtc
    27661 gcaccgacct gctgaaagag ctggacggtt tcaccgccaa acagcagaaa ctggcgctgt
    27721 cgaagctgct ggagaccgcc gaaccgcatc caggtaaggc actctactgc accgaaaaca
    27781 acccgccgtt tgataacggc ctgctgaacg cgcagttgct gcaacaggcg aaaccgtttg
    27841 tcgatgaacg ccagagcaaa accttctggt tcgatatccg caataccgat cgctccgtgg
    27901 gcgcgtcgct ttcaggctat atcgcccaga cgcacggcga tcaggggctg gcagccgatc
    27961 ctatcaaagc gtacttcaac ggcaccgcag gccagagttt cggtgtatgg aacgcgggcg
    28021 gcgtggaact gtacctgacc ggggatgcca acgactatgt cggtaaaggc atggcgggcg
    28081 gcttaatcgc cattcgtcct ccggttggtt ccgccttccg cagccatgaa gcaagtatta
    28141 tcggcaacac ctgcctgtat ggcgcgaccg gtggtcgtct gtatgccgca ggccgcgcgg
    28201 gtgaacgttt cggcgtgcgg aactccggtg ctatcaccgt ggtagaaggc attggcgaca
    28261 acggctgtga atatatgacg ggcggtattg tctgtattct gggtaaaacc ggcgttaact
    28321 tcggtgcggg catgaccggc ggcttcgctt acgttctcga tgaaagcggt gatttccgca
    28381 aacgcgttaa cccggaactg gtcgaggtct taaacgttga cgatctggcg atccatgaag
    28441 agcatctgcg cggtcttatc accgagcatg ttcagcatac tggctctcag cgcggtgaag
    28501 agattctggc gaactggtca accttcgcca ctaaatttgc gctggttaaa ccgaagtcca
    28561 gtgatgtaaa agcactgctg ggtcaccgta gtcgtagcgc agcagagttg cgcgtgcagg
    28621 cgcagtaagg ggtagcaaca atgagtcaga atgtttatca atttatcgac ctgcagcgcg
    28681 ttgatccgcc taagaaaccg ctgaagatcc gcaaaattga gtttgttgaa atttacgagc
    28741 agttttccga aggccaggcc aaagcgcagg ctgaccgctg cctgtcgtgc ggcaacccat
    28801 actgcgagtg gaaatgtccg gtacacaact acatcccgaa ctggctgaag ctcgccaacg
    28861 aggggcgtat ttttgaagcg gcggaactgt cgcaccagac caacaccctg ccggaagttt
    28921 gcggacgagt ctgcccgcaa gaccgtctgt gcgaaggttc ctgcactctg aacgatgagt
    28981 ttggcgcggt gaccatcggc aacattgagc gttatatcaa tgataaagcg ttcgaaatgg
    29041 gctggcgtcc ggatatgtcc ggcgtgaagc aaaccggtaa aaaagtggcg attatcggcg
    29101 caggcccggc aggtctggcg tgtgcggatg tcctgacgcg taacggcgta aaagccgttg
    29161 tcttcgaccg tcatccagaa attggcgggc tgctgacctt cggtattccg gccttcaagc
    29221 tggaaaaaga ggtaatgacg cgtcgccgtg aaatcttcac cggcatgggt attgaattca
    29281 aactcaatac cgaagtgggc cgcgacgtgc agctggacga tctgctgagt gattacgatg
    29341 ccgtcttcct tggcgtcggg acttatcagt caatgcgcgg cggtctggaa aacaaagacg
    29401 ccgatggcgt gtacgcagcg ctgccgttcc ttatcgccaa caccaaacag ttaatgggct
    29461 ttggtgaaac ccgcgacgaa ccgttcgtca gcatggaagg caaacgcgtg gtggtccttg
    29521 gcggtggcga cactgcgatg gactgcgtgc gtacgtccgt gcgccaggga gcgaagcacg
    29581 ttacctgtgc ctatcgtcgt gatgaagaga acatgccggg ttcccgccgc gaagtgaaaa
    29641 acgcgcggga agaaggcgta gagttcaaat tcaacgtcca gccactgggg attgaagtga
    29701 acggtaacgg caaagtcagc ggcgtaaaaa tggtacgtac cgaaatgggc gaaccggatg
    29761 ccaaaggccg tcgccgcgcg gagatcgttg caggttccga acatatcgtt ccggcagatg
    29821 cagtgatcat ggcgtttggt ttccgtccac acaacatgga atggctggca aaacacagcg
    29881 tcgagctgga ttcacaaggc cgcatcatcg ccccggaagg cagcgacaac gccttccaga
    29941 ccagcaaccc gaaaatcttt gctggcggcg atatcgtccg tggttccgat ctggtggtaa
    30001 ccgctattgc cgaaggtcgt aaggcggcag acggtattat gaactggctg gaagtttaag
    30061 ctctgtccca gcgccgcctc ctcagaaaag agtcggcgct gaaattctcc tttctttctg
    30121 gaaagcgcct cgcataatct gaagaaaacc aatgtaatac gctcatctgg attgttaccg
    30181 gtagatgccc ggcgtatagc tgattccatt attcaacgca gcgccatata aagggacaga
    30241 taatggaatc gctctcagag agaacctcaa caggctacca gcaaatccac gacggtatta
    30301 ttcacctggt cgatagcgcc cggacggaaa cggtacgtag cgttaacgcg ctgatgaccg
    30361 cgacatactg ggaaattggc cgacgaattg tcgaatttga acaaggtggc gaggcaaggg
    30421 ctgcgtatgg tgcgcagcta atcaagcgac tatcaaagga tttaagtcta aggtataagc
    30481 gtgggttctc tgcaaaaaac ttacgccaaa tgaggctttt ttacctcttt tttcaacatg
    30541 ttgaaattcg ccagacagtg tctggcgaat taacaccatt gggaattccg cagacaccat
    30601 ctgcagaatt cccatcggca aagatttggc agacgctgtc tgccaaattg agaggctgtt
    30661 tgatatttcc acagcttttg tattgcatct cctattttcg gtttgtatat tcatgcaaat
    30721 aaacgaagga aagttgccat gatttacatt gaacagcttg aattaatcca taaaagtggt
    30781 gatgtgttgt atccagtaaa aataaccaga aaatcatcag gaaaaactgc cttccatctt
    30841 gttccattcg gcttaaataa gactcacgac cttctagagg tggaagatgc ttcagaagca
    30901 attcggctgg tgattgatga acgtcattcc attcgctgca gtacacttac agcaactatt
    30961 acgaataaaa agggcaagcg aattaagcgg acaggtatat acagtatcaa gggtgttaac
    31021 ataaaagaat acaacgtcag gtaatggcac agagcggtcc gtcagttcag gtttggctct
    31081 gtgccaaaga tgggtcaggt cacacctgat ctaataaatt taagccatta aatcagcctt
    31141 aaccttcacc accacctttt taatctcacc cggctcgccg acaacgcatc ctggtttatg
    31201 cggttcactt ggcataaaca cggcgaacat tcccggtttt aagatgatgg cttgctcgtt
    31261 atcaatggtg ctgcaaagct gataatcatc ctcatggtgg aactcttcac actggcgcgc
    31321 agtgcctgcc atgccaaaca gaatccgttc ctcaccgttt aataacagct ggatatcaat
    31381 gtattgctcg tgcaattccg cttttttctc gacgggcgat tgagtgttaa acgtcatgac
    31441 attcataaag atattgtcgc cctgtaattc gtaacgacca ggcgcttttt cttgcggtct
    31501 ggcagctaat gccagcgtta acgcgtcctg taacgcagga tgtaacccag cagacggtaa
    31561 tgactgtact tcacccatca tcataatttt tctccctggg ccaacagcgc agccccaagt
    31621 aaacctgcat cgtggcggta gtgcgccgcc agtaaatcaa catgaaatgc cgctggctcc
    31681 tgcgccagat acgtttccac caacgccaga tacccttctg ccagaccaac gctgccaccg
    31741 accaccacgc actggcaatc agttgtggct ttaatatcag cgatcagcct tgccagcaca
    31801 tgtgcggagc ggtgaatcag ttgctgcgcc tgctcgtcgc cctgcccggc gcgtgtgaaa
    31861 atagttctcg catccgcgcc catgagttca ccttgcgctg ccgctgcaat accgcgacca
    31921 gaagcaatcg cttccacgca acctgtgcgt ccacagccgc agactgggcc gtgtggatcg
    31981 gcaagcgtat gcccgatgtg ccccgccaga ccgctagggc cggtaagcag tttaccgccg
    32041 ctcactacac cgccgccgac gccagtggaa acggtgataa acaccatatc ggttatatcg
    32101 ccttccagcg cctgatactc tgcccatgct gcggcctgcg cgtcgttaat ggcaatggtc
    32161 ggcaaattgg aaagttgttc cagcgttttg actaacggaa agtgtagcaa tccaccaaga
    32221 ttatgcggat tcagcgccag caagctgccg tcgcgaataa ttccggttga agcgatggca
    32281 acctgctgcg catgagcttg caacggggcg actaacgcgg ctaaggcatc acgcaacgcc
    32341 tgcggagtct ggctggctgg tgtcggaagt tctcggcgat cgcggatctg cccgtcagcg
    32401 ccaatcagcg cggcggcaag tttagtaccg ccgatatcaa tcgccaacgt ggtcatagca
    32461 ccgccttttt catcgctgtg ttgtaccact gacaaatgtg ttcaagacgc gtaatggcag
    32521 aaccgaccgt caccgcccac gcgccgtggc gcatcgcatc tgccgcctga gcaggcgtgt
    32581 tgtaacgccc ttcggcaatc acccgacatc cggcgtcgct caacgttttc accagcgcca
    32641 gatccggctc ttctggcgtt tcaggcgtgg tatagccaga aagcgtagtg ccaataattt
    32701 cggctcccag cttttggcat gccaggccgt cttccggcgt tgagcagtcg gtcatcgcca
    32761 gtaaaccgtg atggtgaata cgtgccagca gcgtttcaac aggcaccgga cgcgggcggt
    32821 cggtgccgtc aatggcgata atgtccgcgc ccgcctgcgc cagcgcatca acatcttcaa
    32881 tataggccgt gatgcgtacc ggagaatcct ccagatcgcg tttcacaatt ccaataatcg
    32941 gcacgctcac caccgcacgc gtggcttgca gatttgccac accttcaatg cgaatggcaa
    33001 ccgcgcccgc ctgttctgcc gctaatgcca tggcagcgac gatttcgggt ttatcgagcg
    33061 ggctgtccgg aaccggctgg caggagacaa tcaggccacc gttagcagcg attttttgat
    33121 ccagttgtgc aagtaacgac atacatcttc ccttagcgaa aggcccggta cagagaccgg
    33181 gcaacaggat taacttttgg ttttgactaa atcgtttttg gtgctgccaa atggcacggc
    33241 accgctaaat ggtttgccgt cgatagcgtc atgagtacgc aatgcttccg ggcgcagcca
    33301 acgctgaacg cgggaaggca tatccagacc aatcagcagg atcaccacaa atgtcagact
    33361 gaacgatagc gatgccagcg cagtacccag atccagacgt tgagcgatca acgcgccgat
    33421 gattggggcc agtgcgccgc ccaatgcgcc aacgttgtag gtaaagccca ggcccgctgc
    33481 acgctggtcg gtatcgaaat aaccgccaat cagtttcggt aagatcccgg cgatcccttg
    33541 tccaagcatt tgctggaaga acagtaacag accgagcacc cagacgtttg cgccgccaat
    33601 cgcaaatacc ggaataatca acagctgcga ggccaacagg ctacaaacgt aggctttgcg
    33661 ggttcccagc cagtcaccga ggaagccgct gacacagcac cccaccgcag ccccaaagcc
    33721 gctaaagaac agcacattgg cgacagtatg cgggttataa gccagatcgg ttttcagata
    33781 cgttggcagc agcgcctgaa tcggccatga gtagaggaaa gcaaacaaca cgaccaccat
    33841 cagcattacg cccgttggcc agcgtttacc cgtactttgc accataaagc tgataaagat
    33901 tgcggcgcat aacagcccaa gaacagcgac gatcgcggca ttttgcaggt taccggcgaa
    33961 gcaaaaccac agcgcagtag ccgccgccag tgtcattacg atattggcaa tgcgatgttc
    34021 accacggtag agaatatcta ccatcgtgcg tactggtgct ttacctgcat gcttctcttt
    34081 ccagtcttcc gcttccggga tgtttttacg cagccagaga gcaaagatga taggcaaaat
    34141 gccgataaag aacagcgcac gccagcccca gaccggaacc accaggctat agacctgagc
    34201 ggcaacgacg gcccccacag agaagcctga aatcagaaaa ccactggctt tgttacgcag
    34261 atgttttggc cagctttcaa tgacataggt ggcgctggaa ccgtattcac ccgccatccc
    34321 catgccgatg accagacgcg cgataaacat ggtgatgtag cctggcgcaa agccgcaggc
    34381 cagcgtcccg gccgagaaga gaacgatgct ggtgaccatt gccagacgac gcccgtagcg
    34441 gtcacccata gcgccgagca tcaggccgcc gaaccagcga gagataaagg ctgcggagat
    34501 cagacttgcc gcctgcaccg tcgtcagccc gaattcaccc tgtacttcgg tgagtaccag
    34561 ggcgattaaa acgaaatcaa aaccgtcaag cagatatccc aaccaggcag cggaaaatgc
    34621 gcgccattgt gcacggttga gatggcgata ccacgggata ttctgggttg tagtactcat
    34681 tgtgagtctc ccgcggtggg cgatgcccac acgctttggt ataaaaattg tagggtacag
    34741 atgcgtttat ttcccctcac ccggtagggg cgagcgaggg gaaacaactc acccgcgctc
    34801 ttgcatcaac tgctgggcca gcgccttcag ttctggcaga tatttttcat ctaccggtcc
    34861 aaacggtttg cggcacagcg gcacagaaac gacatccata taatggagga cagttttcag
    34921 gccgcggaat acgcccgttt tgatcagtaa atcaatgact ttattgcatt cagtttgcag
    34981 tttctgcgcg gtctggatat cgccttcttt cagcgcctta acgatcccct gatagcgcca
    35041 gcccatgatg ttgtaggtac taccgatacc accatcagcg cccgccagca gaccagaggc
    35101 gaagatttcg tcgtaaccgt tatagagcac aagatcagga tgttcacgac ggatctgctc
    35161 catctgatag agatcgccag aggtctgttt cagcgcacct acgccaggca atgtaacaag
    35221 tgtgttgatc tgatccaggg tcagttttac cccactcagg gctggaatgt tgtacaccac
    35281 catcggcaaa ccatccgccg aatcaataat tgcccgatag tgatcgcagt gttcttcaaa
    35341 gctgaaagga tagtagaacg gcgtgacggc ggagacggca tcgaagccat aacgtttagc
    35401 cgatgccgca agttgttggc tttcggcggt gctgacgcaa ccgacgtggg cgatgagttt
    35461 aatcttacct ttcgcctctt cggcgacgat ttccagtacc tgttcacgct cggaaaggct
    35521 ttgtacaaag gcctcgccgg tcgaaccacc cacgtataaa ccgtcgatgc cctgctgaat
    35581 attgaactga accaggcgac gcagactcgc tttatccagt gcttgttgtt ggtcaaaagg
    35641 agtcaggagt gcagccatta cgccacgtaa attcgttgcc ataaatacct ctgaagtgat
    35701 gcttgtctga taaacgatat acctttatac ctgttatacc agatcaatta agcaacaccc
    35761 catacagaaa gcttataatg cgatctgctt cactaaagtg gcattatttc tttttgttgg
    35821 tggtctgacc gaaagcgtgc caggtagcag agacgctgtt gagatgcgat tgcaacgcac
    35881 gatcggcttc gtcaggatca tgacggcgga tcgcatcaac gatcgcaata tgctgttgat
    35941 aactaacgtt gttatgttcg tgcagtgcct gatcggtaac cgttgggcgt gcggcaataa
    36001 gccagtcgag cagggcaacg tggatcgcca tgaagattgg gttaccgggg atctccgcca
    36061 gcacgcggtg gaaatcaacg tctgaacgaa tgaatgccgc gttgttatcc agcgactgac
    36121 tgttgatttc cagtgctttt gccagcaaat cgatttgctc atcggtggca tgttcagccg
    36181 catagcgcac cagactggat tcaaagaaca gacgtaattg ttcgaaatgg gcaatcccac
    36241 cgggatgaga aaggaaatct ttcgccatgc cggaaagctc accgatgata gtgtccgcag
    36301 aaggacgcga gacgcgagcg cgttcgccgt tgtttatttg caccagacct ttgcgtttta
    36361 acgctgccag cgcttcacgc accgaaggac gcccgacgtt aaagaacgcc atcagttcgc
    36421 gttcagacgg taattgttca ccttcgccaa attcacgacg gcggatcatc tgttccagct
    36481 cttcttccac catttcggag agttttttac gcgccagcgg gcggctacgc aagttgcgac
    36541 caattgcagg tgaagaatct tcggtttgcg aatcaaatgc gttcataagg cccattctgt
    36601 aaggtcagtg tgattaacat catcagtgac atcctatcac aggattgaaa gtaggggaaa
    36661 atggcaggtt tttctctttg tgcctcatca ttaccataat taacggaata attaactatt
    36721 gcgaaaaatt aatgtaacgc agataaaaac atcccgtttg aattatttat aagactattc
    36781 acgagcatta tgaatattat gaatgcgttc ttgcaaaata atcataagcg catatttttt
    36841 aatgaaaaat tatctcacct acaattaaaa acacgacatc cgcaccataa atagacttgc
    36901 aaaaaatata acatcattgt tttcaatctg ccgtttatgg gattgaccgt tttcttttga
    36961 cacggagttc aacaatgttc ggcataatta tatctgtcat cgtattaatt acgatgggct
    37021 atttgatcct gaaaaactac aaacctcagg tggtgctggc tgccgcaggt atcttcctga
    37081 tgatgtgcgg tgtctggtta gggttcggtg gtgtactcga gcccgccaaa agcagcggct
    37141 acttgatcgt cgatatttat aatgaaatcc tgcgcatgct gtccaaccgc attgccggat
    37201 tggggctatc gattatggcg gtgggcggta tgcccgctac atggagcgca taggggccag
    37261 tcgcgcgatg gtgagcttgt taagccgccc gttaaaactc attcgctcac cgtatattat
    37321 tctgtcggca acttacgtca tcggtcaaat catggcgcag tttattacca gcgcctccgg
    37381 tctgggtatg ttgctgatgg tcaccttatt tccgacactg gtgagtctgg gagtaagtcg
    37441 tctctctgcg gtggcggtta tcgcaaccac aatgtccatt gagtggggaa ttctggaaac
    37501 gaactccatt tttgcagccc aggtcgcggg aatgaaaatt gccacttact tcttccacta
    37561 ccagcttccg gtcgcctctt gcgtcattat ctcggtggcg atctcccact ttttcgtgca
    37621 acgcgctttt gacaaaaaag ataaaaatat caatcacgaa caagcagagc aaaaagctct
    37681 cgataatgtc ccgccgctct attacgccat tttacctgtg atgccgttaa tcctgatgct
    37741 cggctcgctg ttcctcgccc acgtcgggct gatgcagtca gaactgcatc tggtggtggt
    37801 gatgttactg agtttgacgg tgacgatgtt tgttgagttc ttccgcaagc ataacttgcg
    37861 cgaaacaatg gacgatgtgc aggcgttttt tgacggcatg ggtacgcagt ttgccaacgt
    37921 ggtaacgctg gtggtcgcgg gtgaaatatt tgcgaaaggc ttaacgacga ttggcactgt
    37981 cgatgcggtt atcaggggtg cggagcattc tggtctgggc ggtattggcg tgatgattat
    38041 tatggcgctg gtcattgcca tttgtgccat tgtgatgggc tctggcaatg cgccgtttat
    38101 gtcatttgcc agtcttattc cgaatatcgc agctggacta catgtaccag cggttgtaat
    38161 gattatgccg atgcattttg ccacgacgct agcgcgcgcg gtttcgccga ttactgcggt
    38221 ggtggtcgtt acgtcaggaa ttgcaggcgt ttcgcctttt gcggtggtga agcgaacagc
    38281 gatccccatg gcagtcggtt tcgtggtgaa tatgattgcc acaatcaagc tattttatta
    38341 agccattaaa agacaaaaca ggccaccagg gcctgttttt gtattacttc acaacgcgta
    38401 atgccggtcg accaccgcgt ggtggctgcg gaggttcatc gtcaggatga gtgtcatcat
    38461 cgtgatctgg cttgtcgcca tcaataaccg acataacggt ttcgttgtct gccgatgcct
    38521 cttcatcatt catgatgctg gtatcttcat cgtaggcagc ttcaggctca aacattgtgc
    38581 ctgcgccatt ttcacgggcg tagatagcca gcacggcagc cagcggcaca gaaacctgac
    38641 gcggaatgcc gccaaagcgc gcgttaaagc gcacctcatc attcgccagt tccagattgc
    38701 cgacagcacg cggcgcaatg ttgagtacga tttgcccgtc acgcgcatat tccataggaa
    38761 cctgcacgcc agggagcgtc acatccacca ccaggtgcgg cgtgagctgg ttatccagca
    38821 accactcata gaatgcacgc agcagatagg gacgacgtgg tgttagctgt gacaaatcca
    38881 tacagattaa ctccggccca gacgcatttc acgttctgct tcagttaaag aagcaaggaa
    38941 agagtcacgc tcaaagacgc gggtcatata gcctttcagc tctttcgcac ccgggccgct
    39001 gaactcgatg cccagttgcg gcagacgcca cagcagcgga gcaagatagc aatcgaccag
    39061 gctgaactca tcgctcagga agtacggctt ctgaccgaag accggcgcaa tcgccagcag
    39121 ttcttcgcgc agttgcttac gtgcggcatc tgcttcagaa gctgaaccgt tgatgatggt
    39181 gttcatcagc gtgtaccagt ctttttcgat gcgatgcatg tacagacggc tttcaccgcg
    39241 agctaccggg taaacaggca tcagtggcgg atgcgggaaa cgctcatcca gatattccat
    39301 aatgatgcga gattcccaca gggtcagctc acgatccacc agggtcggaa cgctctgatt
    39361 cgggttgagg tcaatcagat cctgaggcgg attgtccttt tccacgtgtt cgatctcgaa
    39421 acttacacct ttctcagcca gcacaatgcg gacctgatgg ctatagatgt cagtaggacc
    39481 ggaaaacagc gtcattaccg aacgtttgtt ggcagcgaca gccatgaaaa cctccaggta
    39541 tagtcagaat ttttactgct accagccacc aggtggccag tcagaagttg tgttacccag
    39601 taaggaacga ctctctttgt tcgaaaatca aacaaaaaat gagcaatacc cgacatttgg
    39661 gcagaaaatt ggatgatagt ttaccagatt ttgcgacctt tgtggtgagt cgatgccgga
    39721 aatggggaaa aagagatgcg ctttagtctg aaatagttga cttagtccct tattggcgat
    39781 gtggtttttg ttttacctgt ctgtcaggtg gcagcaaaaa gcaactttcc agtttttacg
    39841 ctgattcaga ttttagctat aaaaaaaccc gccgaagcgg gttttttcga aaattgtttt
    39901 ctgccggagc agaagccaat taacgtttgg agaactgcgg acgacgacgt gctttacgca
    39961 gaccgacttt cttacgttca acctgacgag cgtcacgagt aacgaagcca gctttacgca
    40021 gttcagaacg cagggactcg tcgtattcca tcagagcgcg ggtgataccg tgacggatcg
    40081 caccagcctg accagagata ccaccacctt taacggtgat gtacaggtcc agtttctcaa
    40141 ccatgtcgac cagttccagc ggctgacgaa ctaccatgcg ggcagtttca cgaccgaagt
    40201 actgttccag agaacgttgg ttgattacga ttttaccgtt gcccggtttg atgaaaacgc
    40261 gagctgcgga acttttgcgg cgaccagtgc cgtagtattg attttcagcc attgcctata
    40321 atcccgatta gatgtcaaga acttgcggtt gctgtgccgc gtggttgtgc tcgttacccg
    40381 cgtaaacttt cagtttacgg aacatagcac gacccagcgg gccttttggc aacatgcctt
    40441 taaccgcgat ttcaatcaca cgctcaggac ggcgagcaat catctcttca aaggtcgctt
    40501 gtttgatacc accgatgtgg ccggtgtggt gatagtacac tttgtcagta cacttgttgc
    40561 cggttacagc aactttgtca gcgttcagaa cgatgatgta atcaccggta tctacgtgcg
    40621 gagtgtattc cgctttgtgc ttaccgcgca ggcgacgagc cagttcagta gccagacggc
    40681 ccagagtttt accggtcgcg tcaacaacat accagtcgcg ttttacggtt tctggtttag
    40741 ctgtaaaagt tttcattaaa agcttaccca ataaatagtt acacgttggt gaacacccaa
    40801 acgtcttcaa ttgttgaggt tcacacgaca aagtccggca aacctacccc ttcgaatagc
    40861 ctatgccagc acacaaaaag ttttgggaaa aaactttctt gtaacgtggg gtcgcaggat
    40921 tatagagaag tcggggtcaa agatcgaccc ctttttgtga tttgtgacag gttttaaccc
    40981 gccaaatgct cgcgcttcag atactcttcg ctttgcatct cttgcagacg tgacaggcaa
    41041 cgctggaact caaacttcag ccgatcgccc tgataaattt catacagcgg cacttctgca
    41101 ctcaccacta atttgacatg gcgctcgtaa aactcatcca ccagcgcaat aaagcgccgc
    41161 gcttcgctct ccatcaaccg cgtcataact ggtacatcaa acaacatgac cgtatgaaag
    41221 aggcgtgaga gcgcaatata gtcatgctgg ctgcgggcat cgacacacaa ggtggtaaaa
    41281 gagacagcaa gcgtctgatt ctcagcgccc attgtcgcca gcggtcgatg gttgatttct
    41341 aacgtcggtg aattttcgcg tttcgctccc gccagcgcca accatagttt atccatttgt
    41401 gcccgggttt catcgtggag tggcgaaagc cacagatgcg cctgagtgag tgtacgcagt
    41461 cgataatcaa caccagcgtc cacgttcatt acatcacaat gctgtttaat ggcatcgatt
    41521 gcaggcagaa aacgcgcacg ttgcaagcca tttcgataaa gttcgtccgg cggaatattt
    41581 gacgttgcta ccagggtaat accgcgggcg aacagggctt tcatcagacc gccaagtagc
    41641 atggcgtcgg taatatcaga aacaaaaaat tcgtcaaaac agagcacgtc agtttcggct
    41701 ttaaagcgat cggcaataat ttccagcgga tcggtctgcc cctgtaaggc agttagctct
    41761 tcgtgcaccc gcagcataaa acggtgaaag tgcaggcgct gtttccgctc tcccggcagg
    41821 ctttgataga aaaggtccat cagccaggtt ttcccgcgtc ctacaccgcc ccacatatat
    41881 aagccacgca ctggcgtatg ctttgtgtct tcgcgtttac cccacagctt accgacccgc
    41941 gccattagcc cactcgtcct gggggctggt ggcctgctat tgatgagttc ttgataaata
    42001 atttccaggc ggctgacggc ctctttttga acgtcgtcgg gttgatggct gccttcattg
    42061 agcgccttca ggtattgcga tgttggggta acgctttgca tgatcttatt attattcctt
    42121 gaataatcgg tgcgccgttg ttcacggttg acgaaaaaaa ggccgttcta cactacgcga
    42181 tatgcagtcg ggattccact tctgtggaat taacggttat agtggcataa tcagccgtag
    42241 gcatggagcc tgaagccaac accctacgga aacaaaagac aacgggagat gttcatgacc
    42301 tgggaatatg cgctaattgg gttagtcgtc ggcatcatta ttggtgctgt ggccatgcgt
    42361 tttggtaatc gtaaactacg ccagcaacag gcgttgcagt acgaactgga aaagaataaa
    42421 gctgaactgg acgagtatcg cgaagagctg gttagccact ttgcccgcag cgcggaatta
    42481 ctggatacca tggcgcacga ctatcgccag ctgtatcagc acatggcgaa aagctccagc
    42541 agcctgctgc cggaactgtc tgctgaagca aacccgttcc gtaatcgtct ggcagagtct
    42601 gaagccagca acgatcaggc accggtgcag atgcctcgcg actattctga aggtgcatcc
    42661 ggcctgctgc gtactggcgc gaagcgcgac taatttattt ttcgggcgca gccattgcgc
    42721 cctcctcttc tctccctccc cgactatcat ttaatctggt gtctcattgt tagccgtctg
    42781 aaaattcaat aacatcaaac tgttttgaat ctcttttctt atcattcagg tacgagagca
    42841 ggaataatga aaaaacaaac ccagctgttg agtgcattag cgttaagtgt cgggttaact
    42901 ctctcggcgt catttcaggc cgtcgcgtcg attccaggcc aggttgccga tcaggcccct
    42961 ctccccagtc tggctccaat gctggaaaaa gtgcttccgg cagtggtgag cgtacgggtg
    43021 gaaggaacgg ccagtcaggg acagaaaatc ccggaagaat tcaaaaagtt ttttggtgat
    43081 gatttaccgg atcaacctgc acaacccttc gaaggtttag gttccggtgt catcatcaac
    43141 gccagtaaag gctatgtgct gaccaacaac catgtgatta atcaggcaca gaaaatcagt
    43201 attcagctca atgatgggcg cgagtttgat gcaaaactga ttggtagcga tgaccagagc
    43261 gatatcgccc tgttacaaat tcaaaacccg agcaaattaa cgcaaatcgc tattgccgac
    43321 tccgataaat tgcgcgtcgg tgattttgcc gtagcggtcg gtaacccatt tggccttggg
    43381 caaaccgcca cctctggcat tgtttccgca ttaggccgca gcgggttgaa tcttgaaggt
    43441 ctggaaaact ttatccagac agatgcttcc attaaccgcg gtaactccgg cggtgcacta
    43501 ttaaacctta acggtgagtt aattggcatc aacactgcaa tccttgcgcc tggcggcggg
    43561 agcgtcggga ttggatttgc catccccagt aatatggcgc gaacactggc gcagcagctt
    43621 atcgactttg gtgaaatcaa acgcggtttg ttaggcatca aaggcaccga gatgagtgcc
    43681 gatatcgcca aagccttcaa ccttgacgtg cagcgtggcg cgtttgtcag cgaagtgttg
    43741 ccaggttctg gctcggcaaa agcgggcgtc aaagcgggcg atattattac cagcctcaac
    43801 ggcaaaccgc tgaatagctt tgctgagttg cgctctcgta tcgcgactac agagccgggc
    43861 acgaaagtga agcttggcct gctgcgtaac ggcaaaccac tggaagtaga agtgacgctt
    43921 gataccagca cctcttcgtc ggccagcgct gaaatgatca cgccagcgct ggaaggtgca
    43981 acgttgagcg atggtcagct aaaagattgc ggcaaaggta ttaagatcga tgaagttgtc
    44041 aaaggaagcc cagctgctca ggcaggcttg caaaaagacg atgtgatcat tggcgtcaac
    44101 cgcgatcggg tgaactcgat tgctgaaatg cgtaaagtgc tggcggcaaa accggccatc
    44161 atcgccctgc aaattgtacg cggcaatgaa agcatctatc tgctgatgcg ttaatgtcgt
    44221 aaaccgggca tcaggcttac gtgtgatgtc cggttaactc gtggtatgct gctgccgttc
    44281 ccttttttaa tgacgcctcc atcatgtttg tgaagctctt acgttccgtt gcgattggat
    44341 taattgtcgg cgctattctg ctggttgcca tgccttcgct gcgcagcctt aacccgcttt
    44401 ccactccgca atttgacagt accgatgaga cgcctgccag ctataatctg gcggttcgcc
    44461 gcgccgcgcc agcggtggtt aacgtttaca accgtggtgt gaacaccaac tctcacaacc
    44521 agcttgagat ccgcaccctg ggatccggtg taatcatgga tcaacgcggt tatatcatca
    44581 ccaataaaca cgtcatcaac gacgccgatc agatcatcgt cgccttacag gatggacgtg
    44641 tatttgaagc attgctggtg ggatctgact ctctaaccga tctggcggta cttaaaatta
    44701 atgccactgg cggtttacct accattccaa ttaatgcacg tcgcgtaccg cacattggcg
    44761 acgtagtact ggcgatcggt aacccgtaca acctcgggca gaccattacc caagggatta
    44821 ttagtgccac ggggcgaatc ggtctgaacc ctaccgggcg gcaaaacttc ctacaaaccg
    44881 atgcttccat taaccacggt aactctggcg gcgcgctggt gaactcgctg ggagaactga
    44941 tgggcattaa cacgctgtcg tttgataaga gtaacgatgg cgaaacgccg gaaggtatcg
    45001 gctttgcgat tcctttccag ttagcaacca aaattatgga taagctgatc cgcgatgggc
    45061 gcgtgatccg cggctacatt ggcattggtg gacgtgagat cgcaccactg cacgcgcaga
    45121 gcggtggtat agatcaactg caagggatcg tggttaatga agtgtcacct gacggcccgg
    45181 cggcgaatgc gggtattcag gtcaacgatc tgattatttc ggtggataac aaaccggcca
    45241 tctctgctct ggagacgatg gatcaggtgg cagaaattcg ccctggttcg gtgatcccgg
    45301 ttgtagtgat gcgtgatgat aagcagttaa cgctgcaggt caccattcag gaatatccgg
    45361 caaccaatta agtcgagtgc tcaaaacaaa aaaccggagt ctgtgct
//
LOCUS       DAJVUY010000008        43867 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.008, whole genome shotgun sequence.
ACCESSION   DAJVUY010000008 DAJVUY010000000
VERSION     DAJVUY010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43867
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.008"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            83..625
                     /gene="lpfE"
                     /locus_tag="OQQ72_000470"
     CDS             83..625
                     /gene="lpfE"
                     /locus_tag="OQQ72_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HCS2010318.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPIPVEFAINGDGAHQLNYIASYVPIRADATI
                     GRADATVDFTVQYSTNNFTS"
     gene            865..2556
                     /gene="eptB"
                     /locus_tag="OQQ72_000471"
     CDS             865..2556
                     /gene="eptB"
                     /locus_tag="OQQ72_000471"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HCS2010319.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            2648..2724
                     /locus_tag="OQQ72_000472"
     tRNA            2648..2724
                     /locus_tag="OQQ72_000472"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2682..2684,aa:Pro,seq:cgg)
     gene            3468..5075
                     /gene="dppA"
                     /locus_tag="OQQ72_000473"
                     /pseudo
     CDS             3468..5075
                     /gene="dppA"
                     /locus_tag="OQQ72_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418001.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter substrate-binding
                     protein DppA"
     gene            5383..6402
                     /gene="dppB"
                     /locus_tag="OQQ72_000474"
     CDS             5383..6402
                     /gene="dppB"
                     /locus_tag="OQQ72_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HCS2010320.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPASGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            6412..7314
                     /gene="dppC"
                     /locus_tag="OQQ72_000475"
     CDS             6412..7314
                     /gene="dppC"
                     /locus_tag="OQQ72_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HCS2010321.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS
                     IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAP
                     LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI
                     LLTVLAFNLMGDGLRDALDPKLKQ"
     gene            7325..8308
                     /gene="dppD"
                     /locus_tag="OQQ72_000476"
     CDS             7325..8308
                     /gene="dppD"
                     /locus_tag="OQQ72_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HCS2010322.1"
                     /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            8305..9309
                     /gene="dppF"
                     /locus_tag="OQQ72_000477"
     CDS             8305..9309
                     /gene="dppF"
                     /locus_tag="OQQ72_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HCS2010323.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(9339..10610)
                     /locus_tag="OQQ72_000478"
     CDS             complement(9339..10610)
                     /locus_tag="OQQ72_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS2010324.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            11086..11193
                     /locus_tag="OQQ72_000479"
     CDS             11086..11193
                     /locus_tag="OQQ72_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS2010325.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="OQQ72_000480"
     CDS             complement(11280..12959)
                     /gene="bcsG"
                     /locus_tag="OQQ72_000480"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS2010326.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS
                     LWPAGQPTTTVTTTGGNAAATVETTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEA
                     KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATS
                     YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK
                     EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTTVLNRWLDVTEKDKNSRSATFYNT
                     LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD
                     RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK
                     IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
     gene            complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="OQQ72_000481"
     CDS             complement(12956..13147)
                     /gene="bcsF"
                     /locus_tag="OQQ72_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HCS2010327.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="OQQ72_000482"
     CDS             complement(13144..14715)
                     /gene="bcsE"
                     /locus_tag="OQQ72_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HCS2010328.1"
                     /translation="MRDIVGPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN
                     QTIASQAETAHVAVISMDSDPAKIFQLDDYQGPEKIKLFSMLNHEKGLYYLTRDLQCS
                     IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLTHCSLLVINPGNNNDKQFSL
                     LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE
                     IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI
                     EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM
                     IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV
                     LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP
                     TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI
                     PEPMRLLDDAVERSS"
     gene            14988..15176
                     /locus_tag="OQQ72_000483"
     CDS             14988..15176
                     /locus_tag="OQQ72_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjR family protein"
                     /protein_id="HCS2010329.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
     gene            15188..15940
                     /gene="bcsQ"
                     /locus_tag="OQQ72_000484"
     CDS             15188..15940
                     /gene="bcsQ"
                     /locus_tag="OQQ72_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HCS2010330.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHRQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAIAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            15937..18549
                     /gene="bcsA"
                     /locus_tag="OQQ72_000485"
     CDS             15937..18549
                     /gene="bcsA"
                     /locus_tag="OQQ72_000485"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HCS2010331.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPLDPVRYLIQTCWLLIGTSRKETPKPRRR
                     AFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLIL
                     ALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRYTS
                     TLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVDIF
                     VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIARTTH
                     EHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHFFS
                     PDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE
                     TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLDNP
                     LTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLP
                     HMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGGLV
                     EEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVLGG
                     AVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQILEG
                     QKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWALWQ
                     DSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRPER
                     SETAQPSDQALAQQ"
     gene            18560..20899
                     /gene="bcsB"
                     /locus_tag="OQQ72_000486"
     CDS             18560..20899
                     /gene="bcsB"
                     /locus_tag="OQQ72_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HCS2010332.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE"
     gene            20906..22012
                     /gene="bcsZ"
                     /locus_tag="OQQ72_000487"
     CDS             20906..22012
                     /gene="bcsZ"
                     /locus_tag="OQQ72_000487"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HCS2010333.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            21994..25467
                     /gene="bcsC"
                     /locus_tag="OQQ72_000488"
                     /pseudo
     CDS             21994..25467
                     /gene="bcsC"
                     /locus_tag="OQQ72_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            25549..27537
                     /gene="hmsP"
                     /locus_tag="OQQ72_000489"
     CDS             25549..27537
                     /gene="hmsP"
                     /locus_tag="OQQ72_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HCS2010334.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIKIFEESYLEEK"
     gene            27720..29006
                     /gene="dctA"
                     /locus_tag="OQQ72_000490"
     CDS             27720..29006
                     /gene="dctA"
                     /locus_tag="OQQ72_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctC"
                     /protein_id="HCS2010335.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            29226..30710
                     /locus_tag="OQQ72_000491"
     CDS             29226..30710
                     /locus_tag="OQQ72_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS2010336.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAVATDDVHPEVTDIPPAQ"
     gene            complement(30806..31735)
                     /gene="kdgK"
                     /locus_tag="OQQ72_000492"
     CDS             complement(30806..31735)
                     /gene="kdgK"
                     /locus_tag="OQQ72_000492"
                     /EC_number="2.7.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417983.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygluconokinase"
                     /protein_id="HCS2010337.1"
                     /translation="MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPA
                     ALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGLYYIETDSTGERTFYY
                     WRNEAAAKFWLESEQSTAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANG
                     GKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTH
                     NAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT
                     GGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            31967..32734
                     /gene="pdeH"
                     /locus_tag="OQQ72_000493"
     CDS             31967..32734
                     /gene="pdeH"
                     /locus_tag="OQQ72_000493"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HCS2010338.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            32804..34864
                     /locus_tag="OQQ72_000494"
     CDS             32804..34864
                     /locus_tag="OQQ72_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS2010339.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(35098..36420)
                     /locus_tag="OQQ72_000495"
     CDS             complement(35098..36420)
                     /locus_tag="OQQ72_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS2010340.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLLILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETQHQSL"
     gene            complement(36831..37844)
                     /gene="yhjD"
                     /locus_tag="OQQ72_000496"
     CDS             complement(36831..37844)
                     /gene="yhjD"
                     /locus_tag="OQQ72_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HCS2010341.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            complement(37893..38792)
                     /locus_tag="OQQ72_000497"
     CDS             complement(37893..38792)
                     /locus_tag="OQQ72_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417978.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2010342.1"
                     /translation="MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQL
                     GTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQDATSISGKLRIDIPPGI
                     AKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGK
                     LTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGG
                     MLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
                     RELSRRVNLFMQWLAGVMKEHLD"
     gene            39312..39914
                     /locus_tag="OQQ72_000498"
     CDS             39312..39914
                     /locus_tag="OQQ72_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS2010343.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            complement(39965..41614)
                     /locus_tag="OQQ72_000499"
     CDS             complement(39965..41614)
                     /locus_tag="OQQ72_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
                     /protein_id="HCS2010344.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVKRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
     gene            42018..43415
                     /gene="ccp"
                     /locus_tag="OQQ72_000500"
     CDS             42018..43415
                     /gene="ccp"
                     /locus_tag="OQQ72_000500"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HCS2010345.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA
                     LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE
                     ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL
                     HSLNGVYTPYMQDKQ"
     gene            43626..>43867
                     /locus_tag="OQQ72_000501"
     CDS             43626..>43867
                     /locus_tag="OQQ72_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS2010346.1"
                     /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT        10540 a        10995 c        11919 g        10413 t
ORIGIN      
        1 ccgttagcac taccggaaaa ttacccgctg ccggggatta tagcggtatt gctaccatac
       61 atgtcgaact ggagtaacag tcatgaagcg aacaatactt gcgttatgcc tgctgcctct
      121 ttccttttcg tcattcgcgg caaccacgga tttagggccg aaaggaacat tgaaattcac
      181 ccttaaaatc agccagggtg cttgcgaact ggtgaaagac agcgttgagg ttgacatggg
      241 caccgcggtt ctcaaaaagc cggtaagaat cggaacggaa attaatccca ctcctttttc
      301 catcggcctg aaaaactgta gcgaagtggt cagagcctac gtgactatgg acggtacacc
      361 caatgcagac gactcaaatc tttttgcgct ggatgcgggt ggcgctacag gcgttgggct
      421 gaaaatcaaa accgctgctg gagtacaaca gttcccggaa aatacaacgc cgataccggt
      481 tgagtttgca attaacggtg atggcgcaca tcaactgaac tatatcgcca gctacgtgcc
      541 tattcgcgcc gatgcaacta ttggtcgcgc agatgcaacg gtcgacttta ctgtacagta
      601 cagtacgaat aatttcacat cttaagggcc agttaactgg ccctttttac tgctttttgt
      661 aacgctaaag tctcttttca aacttgcatt tttgtaaatt tgtgcttcat gcacactctt
      721 tccccacact ttttcgcttt gctgtggtct acttattcgc gcgtgtagat tttacttatc
      781 tgactacctc cgcacttttc ccctgccggg cctgaaaagc cgctaagcag ggtgttatca
      841 cctgtttgtc cagggtttgt ttgcatgaga tacatcaaat cgattacaca gcagaagctg
      901 agctttttgc ttgcaatcta tattggcctt tttatgaatg gcgcggtttt ttatcgccgc
      961 ttcggcagct atgcgcacga ttttaccgtc tggaaaggcg tttctgctgt tgttgaactg
     1021 gccgccaccg tactggtgac cttcttttta ctacgtcttc tatcgctgtt tggccgccgc
     1081 agctggcgta ttctggcgtc gctggtggtg ctcttttccg caggtgccag ctattacatg
     1141 accttcctta atgtggtcat tggttatggc atcatcgctt ccgtcatgac caccgatatc
     1201 gacctgtcaa aagaagttgt tggtctgaac tttattctct ggttaatcgc cgttagtgca
     1261 ttgcctctta tccttatctg gaataaccgc tgtcgctaca ccttgctccg acaactgcga
     1321 accccagggc agcgtattcg cagcctggcg gtcgtcgtac tggcgggtat tatggtttgg
     1381 gcaccgattc gtttgctgga tatccagcag aagaaagtgg agagggcgac cggcgttgat
     1441 ttgccgagtt atggcggtgt cgtagcgaac tcttatctgc catcaaactg gctttctgcg
     1501 ttggggctgt atgcctgggc gcgggtcgat gaatcttccg ataataattc attgcttaat
     1561 ccggcgaaga agtttacata ccaggctcca caaaacgttg atgatactta tgtcgtgttt
     1621 atcatcggtg aaaccacgcg ttgggaccat atgggtattt tcggctatga gcgtaatacc
     1681 acgccgaaac tggcccagga gaaaaatctg gcggcgttcc gtggttactc ctgtgatacc
     1741 gcaaccaaac tctcactgcg ttgcatgttt gtacgtcagg ggggcgcgga agataatccg
     1801 cagcgcacat taaaagaaca gaacattttc gcggttctga agcagttagg attcagttct
     1861 gacctctacg ctatgcagag cgaaatgtgg ttctacagca acacgatggc ggacaacatt
     1921 gcttatcgtg agcagattgg tgcggagcca cgtaatcgtg gcaagccggt agatgatatg
     1981 ttgctggtag acgaaatgca gcaatcgcta gggcgcaacc cggatggtaa gcatctgatc
     2041 attctgcata ccaaaggttc gcattttaac tacacccagc gttatccgcg tagcttcgcg
     2101 cagtggaagc cggaatgtat tggtgttgat agcggctgta ccaaagcgca gatgatcaac
     2161 tcctatgaca actcggtgac ctatgtggat cactttatct ccagcgtgat tgatcaggtt
     2221 cgcgataaga aagcgattgt gttctacgca gctgaccacg gtgagtcaat taatgaacgc
     2281 gagcacctgc acggcacgcc gcgtgaattg gcaccgccgg agcagttccg cgtaccgatg
     2341 atggtctgga tgtcagataa atatctggaa aatccggcca atgcgcaggc atttgcgcag
     2401 ctgaaaaaag aagccgacat gaaagtgcca cgccgtcacg tagagctgta cgataccatc
     2461 atgggttgtc ttggctatac ttcaccggat ggtggaatta acgaaaacaa caactggtgt
     2521 cacatcccgc aggcaaaaga ggcagcggct aactaagcgg cctgctgact ttctcgccga
     2581 tcaaaaggca ttttgctatt aagggattga cgagggcgta tctgcgcagt aagatgcgcc
     2641 ccgcattcgg tgattggcgc agcctggtag cgcacttcgt tcgggacgaa ggggtcggag
     2701 gttcgaatcc tctatcaccg accaaattcg aaaagcctgc tcagcgagca ggcttttttg
     2761 catttgaagc ccatgaggat gagaacctcc gggggctggg aggttcgact cgacgtaggc
     2821 ctgataagac gcgccagcgt cgcatcaggc aacggcaccg cacttattgt cggatgcggc
     2881 gcgaccgcct tattcgacca acacaccaca cattttcctg ccaactttgc gccccatatc
     2941 tcactatcca ttaacggatt tgtgacagaa accattgtct ttttttatat ttgcttaaat
     3001 ctttttttgc gttacttatg gctggcgctg gcattttccg ctgtgcgttt tagcgttcat
     3061 ggtattaatc gctcagatat ccaccttttc ctcagatttt tttcattaaa tgcataaaac
     3121 ttaatcacca aatgttgcta aatattaagc tgattgttct ggttatgttg gagtagcaca
     3181 aatttctctg ctgcaaatag ctgtttgaag ttttttaatc tttgtttgtg ggttctcacc
     3241 gttggtgtaa atcccggttg gctgtattga cgttttcaca ttctgttgac agattgtagg
     3301 tcacgagggg cattttatgg aggatccgca ctgttacact gatgttaatt agtacggcat
     3361 ccccacctca taacgttgac ccgaccgggc aaaaaacaaa aaaggtcagg tagcgacaac
     3421 ccactgcaaa gggttaaaac aacaaacatc acaattggag cagaataatg cgtatttcct
     3481 tgaaaaagtc agggatgctg aagcttggtc tcagcctggt ggctatgacc gtcgcagcaa
     3541 gtgttcaggc taaaactctg gtttattgct cagaaggctc tccggaaggg tttaacccgc
     3601 agctgtttac ctccggcacc acctatgacg cctcttccgt accgctttat aaccgcctgg
     3661 ttgaatttaa aatcggcacc actgaagtga taccgggcct cgctgaaaag tgggaagtca
     3721 gctaagacgg taaaatctat accttccatc tgcgtaaagg tgtgaagtgg cacgacaata
     3781 aagaattcaa accgacgcgt gaactgaacg ccgatgacgt ggtgttctcg ttcgaccgtc
     3841 agaaaaacgc gcaaaacccg taccataaag tctctggcgg cagctacgaa tacttcgaag
     3901 gcatgggctt gccggagctg atcagtgaag tgaaaaaggt ggacgacaac acagttcagt
     3961 tcgtactgac tcgcccggaa gcgccgttcc tcgctgatct ggcaatggac ttcgcctcta
     4021 ttctgtcaaa agaatatgct gatgcgatga tgaaagccgg tacaccggaa aaactggacc
     4081 tcaacccaat cggaaccggt ccgttccagt tacagcagta ccaaaaagat tcccgtatcc
     4141 gctacaaagc gtttgatggc tactggggca ccaaaccgca gatcgatacg ctggtcttct
     4201 ctattacccc tgatgcttcc gtgcgttacg cgaaattgca gaagaatgaa tgccaggtga
     4261 tgccgtaccc gaacccggca gatatcgctc gcatgaagca ggataaatcc atcaacctga
     4321 tggaaatgcc ggggctgaac gtcggctacc tctcgtataa cgtgcagaaa aaaccgctgg
     4381 atgacgtgaa agttcgccag gcactgacct acgcggtgaa caaagacgcg atcatcaaag
     4441 cggtttatca gggcgcgggt gtatcagcga aaaacctgat cccgccaacc atgtggggct
     4501 ataacgacga cgttcaggat tacacctacg atcctgaaaa agcgaaagcc ttgctgaaag
     4561 aagcgggtct ggaaaaaggt ttctccatcg acctgtgggc gatgccggta caacgtccgt
     4621 ataacccgaa cgctcgctgc atggcggaga tgattcaggc agactgggcg aaagtgggcg
     4681 tgcaggccaa aatcgtcacc tacgaatggg gtgagtacct caagcgtgcg aaagatggcg
     4741 aacatcagac ggtaatgatg ggctggactg gcgataacgg ggacccggat aacttcttcg
     4801 ccaccctgtt cagctgcgcc gcctctgaac aaggttctaa ctactcaaaa tggtgctaca
     4861 aaccgtttga agatctgatt caaccggcgc gtgctaccga cgaccataac aaacgcgttg
     4921 aactgtacaa gcaatcgcag gtggtgatgc acgatcaggc tccggcactg atcatcgctc
     4981 actccaccgt gtttgaaccg gtacgcaaag aagtcaaagg ctatgtggtt gatccattag
     5041 gcaaacatca cttcgaaaat gtctctatcg aataattaaa agccatacaa gactgatggt
     5101 aaaggcaaaa ctgcctgatg tgctccgctt atcaggccta cgaaaattct gcaatgtatt
     5161 gaatttacac gattttgtag gccggataag gcgttaacgc cgcatccggc ataaacaaag
     5221 cgcactttgt caacaatctg tatacccggt ggcgctgtgc ctctgcgtgc agcgccatcc
     5281 ggcagcaata cttcattctc tgtccgacaa gggcgggaat tgatttgtga gcaatacaga
     5341 cacgcagttc caggctgcgg gtcactatag agaatccggg ttatgttgca gtttattctc
     5401 cgacgtttgg gactcgtcat ccccacgttt atcggtatta cccttctcac atttgccttt
     5461 gtccacatga tcccgggcga tccggtgatg atcatggcag gcgaacgtgg gatctcccct
     5521 gagcgtcacg cgcagctgct ggctgaactc ggcttagata aaccgatgtg gcagcagtat
     5581 ctccattaca tttggggcgt aatgcacggc gatctaggca tttcaatgaa aagccgaatt
     5641 ccagtatggg aagagttcgt gccgcgcttt caggccacgc tggaacttgg cgtctgcgcg
     5701 atgatttttg ctacggcagt cggtattccg gttggtgtgc tggctgcggt taaacgcggt
     5761 tccattttcg atcacactgc agttggcctg gcgctgaccg gctactcgat gccgatcttc
     5821 tggtggggca tgatgctgat catgctggtt tcggtgcact ggaacctgac gcccgcctcc
     5881 ggtcgcgtga gcgatatggt gttcctcgat gactccaatc cgttaaccgg ttttatgcta
     5941 atcgacaccg ccatctgggg tgaagacggc aactttatcg atgccgtcgc ccatatgatc
     6001 ttgcctgcca ttgtgctggg tactattccg ctggcggtca ttgtgcgtat gacacgctcc
     6061 tcgatgctgg aagtgctggg cgaggattac atccgcaccg cgcgcgccaa agggctaacc
     6121 cgcatgcggg tgattatcgt ccatgcgctg cgtaacgcga tgctgccggt ggtgaccgtt
     6181 atcggcctgc aggtgggaac attgctggcg ggggcgattc tgaccgaaac catcttctcg
     6241 tggcccggtc tgggacgctg gttgattgac gcactgcaac gccgcgacta tccggtagtg
     6301 cagggcggcg tattgctggt ggcgacgatg attatcctcg tcaacttgct ggtcgatctg
     6361 ctgtacggcg tggtgaaccc gcgtattcgt cataagaagt aaggggacat catgtcacag
     6421 gttactgaaa ataaagtgat tagcgcaccg gtgccgatga ccccgttaca ggagttctgg
     6481 cactatttta aacgcaacaa aggcgcggtc gtcgggctgg tttacgtcgt catcgtgctg
     6541 ttcatcgcga tctttgccaa ctggattgca ccctataacc cggcggaaca gttccgcgat
     6601 gcactgctcg ccccgccagc ctggcaggaa ggcggcagca tggcgcactt gctgggcacc
     6661 gatgacgtag gccgtgatat gctgtcgcgc ctgatgtacg gtgcgcgcct gtcgctgctg
     6721 gttggctgtc tggtagttgt gttatcgctg attatgggcg ttattctcgg cctgatcgcc
     6781 ggttactttg gcggcctagt cgataacatc attatgcgcg tggtcgatat catgctggcg
     6841 ctgccaagtc tgctgctggc gctggtgctg gtggcaattt tcggcccgtc gattggtaac
     6901 gccgcgctgg cactgacctt cgttgccttg ccgcactatg tgcgcttaac ccgcgccgcc
     6961 gtgctggtgg aagttaaccg cgattacgtc accgcgtctc gcgtggcggg tgccggggcg
     7021 atgcgtcaga tgtttattaa catcttcccg aactgccttg cgccgctgat tgttcaggcg
     7081 tcgctcggtt tctctaacgc cattctcgat atggctgctc ttggtttcct cggcatgggg
     7141 gcacagccgc caacgccgga gtggggcacc atgctctccg acgtgttgca gttcgcgcaa
     7201 agcgcctggt gggtcgtgac cttcccgggt ctggcgatcc tgctgacggt gctggcattt
     7261 aacctgatgg gtgacggtct gcgtgacgcg ctcgatccca aactgaagca gtaagaggtt
     7321 cgagatggcg ttattaaatg tagataaatt atcggtgcat ttcggcgacg aaagcgcacc
     7381 gttccgcgcc gtagaccgca tcagctacag cgtaaaacag ggcgaagtgg ttgggattgt
     7441 gggtgagtcc ggctccggta agtcggtcag ttccctggcg attatggggc tgattgatta
     7501 tccgggccgc gtaatggcgg aaaaactggt gtttaacggt caggatttgc agcgtatatc
     7561 agaaaaagag cgccgcaacc tggtgggtgc cgaagtggcg atgatcttcc aggacccgat
     7621 gaccagcctt aacccgtgct acaccgtggg tttccagatc atggaagcga ttaaggtgca
     7681 tcagggcggc aacaaaagta cccgccgtca gcgggcgatt gacctgctga atcaggtcgg
     7741 tattcccgat ccggcttcgc gtctggatgt ttacccgcat cagctttccg gcggcatgag
     7801 ccagcgcgtg atgatcgcca tggcgattgc ctgtcgacca aaactgctga ttgccgatga
     7861 gccgaccacc gcgctggacg tgaccattca ggcgcaaatc atcgaactac tgctggagct
     7921 acagcagaaa gagaacatgg cgctggtgtt gattacccat gacctggcgc tggtggcgga
     7981 agctgcgcat aaaatcattg tgatgtatgc aggccaggtg gtggaaacgg gcgatgcgca
     8041 cgccatcttc catgcgccgc gtcacccgta tactcaggca ttgctgcgtg cgctgccaga
     8101 atttgctcag gacaaagaac gtctggcgtc gttgccaggt gtcgttcccg gcaagtacga
     8161 ccgcccgaac ggctgcctgc ttaacccgcg ctgcccctat gccactgaca gatgtcgcgc
     8221 tgaagaaccg gcgctgaata tgctcgctga cgggcgtcag tccaaatgcc attacccact
     8281 tgatgatgcc gggaggccga cactatgagt acgcaagagg ccaccctgca acaaccgctg
     8341 ttgcaggcta tcgacctgaa aaaacattat ccggtgaaga aaggcatgtt cgcgccggaa
     8401 cgtctggtta aagcgctgga tggcgtttcg tttaaccttg aacgtggcaa aacgctggca
     8461 gtagtgggcg aatctggctg cggtaaatcg accctcggtc ggttgctgac gatgattgaa
     8521 acgcccaccg gtggcgagct gtattaccag gggcaggatc tgcttaagca cgatccgcag
     8581 gcgcagaagc tgcgtcggca gaaaatccag atcgtcttcc agaaccctta cggttcgctg
     8641 aatccgcgta aaaaagtcgg gcaaattctt gaagagccgc tgctgatcaa caccagctta
     8701 agcaaagaac agcgtcggga aaaagccctg tcgatgatgg cgaaagtcgg cctgaaaacc
     8761 gagcactatg accgctatcc gcatatgttc tccggcggtc agcgtcagcg tatcgccatc
     8821 gcccgtggtc tgatgctcga cccggatgtg gtgattgccg atgaaccggt ttccgcgctg
     8881 gatgtttcag tgcgcgcgca ggtgctgaat ctgatgatgg atttgcagca ggagttgggg
     8941 ctgtcttatg tctttatctc ccacgacctg tcggtggtgg agcacattgc tgatgaagtg
     9001 atggtgatgt acctgggccg ctgcgtggag aagggaacga aagaccaaat cttcaataac
     9061 ccgcgccatc cgtacactca ggcgctactt tccgcgacgc cgcgcctgaa cccggacgat
     9121 cgccgcgagc gcatcaagct cagcggtgaa ctaccaagcc cactgaatcc accgccgggt
     9181 tgcgccttca acgcccgctg tcgtcggcgc ttcggcccct gcacccagtt gcagccgcag
     9241 ctaaaagact acggcggtca actggtagct tgttttgctg ttgatcagga tgaaaatccg
     9301 cagcgttaac tcacaaaacc ggggccatgc gctccggttt actcaatcag cttcaacagt
     9361 ggcgacaagc atagcaaaat gccgtaaagc agaattagcc aggctttaaa tccgcgaagt
     9421 ttttccagtt gtgcgacttt atagatcagg aaaaacggaa tgaggcacga cacaatgcca
     9481 tataacgggc ttcccaactg aaagaacacc agcaccgata cacgaaacga aacccaaatc
     9541 gtcaacgtaa tgacgataaa agcgcagatc gccagagtca gcatgcgtga gttaattttc
     9601 ttggtatcaa taattcggct taacagattg agaataatgc ctttaatagc ctcgtggaaa
     9661 ccgagataaa tgccaaagaa tgcggtcagt acggcaaaga tattcagcac cgtagaggtg
     9721 atatgaatga tatgtccagg gatcacctgc gcggccagtg ccagtgccga gatattttgt
     9781 tcaaaggcag aaacggcttc ttcgtggcta attgagaagg taaacgaaaa ggcaaaaaac
     9841 aggatcaccg cgatgagcgt gatataacta attcggtggg tacgcagcgc gagccgggtt
     9901 gccagtactt tatctgcttc ccgtttacga taggcaatat tcattgggtt aagtacctga
     9961 ataaataccg cagaaaagaa gcaaaatgga attgtaagca ggacatcgcg gaaaaagacg
    10021 gaggcttgcg ggaaggcggt tatattggcg aaattccagt gcgggatcat cgcaaaaccg
    10081 aacacgacaa taatccctac tttgaccacc accattggcc cggaaatctt aaacagtaat
    10141 cgttcaccac cagacgcaat cgctaccagt acggcgaaaa tagcgacttt ataaagtaga
    10201 gattgtgaaa gatcggcatc ggttaaaccg aaggttttca ggtacgaggc gctgtcgaaa
    10261 accacggaga gagagtagat aaaaatcccg tggataatca tcaaaaagta gataaccccg
    10321 aggaaaattc cccagttctt ccccaggtaa tgactgataa tatcggtgta gtcattacag
    10381 gaatcgcttt cagaaagggt ttttaaataa atgtcctgca ctacccaggt ggcaggataa
    10441 gcaatgatcg ctgcggtaat aaatacccaa attcccttca agccaatttg tactggcatc
    10501 agcacggttc cggcaccaat cgccatgcct atgcataata aaacccagcc gaagtcgtag
    10561 cgtgtaaacg gcaatttctg attgtgtttc gatagtgtgt tgtgctgcat aaagtcctgt
    10621 ccagaaagaa gtcggcctcg caaaaatgaa taaacccagt ttctcttgcg caacaggtgg
    10681 agaagtcgaa tacgcagtat gtaaaaaatg aggcaacaga ttcactgggg aggtcgcgag
    10741 gaggcgcaat tctacaaaat tgcgcatttc actaccagtc tggagtcagc ccggatatga
    10801 actgcaacta ttgcaaataa agaaattaag ctggaaggca tcgcgcaatg aggaagattg
    10861 ccgggtgctg acagtaaaaa gcaatcgtaa aatcagcggc aagccgaaag ggttccggtg
    10921 aggcgcaatg ttgcgggggc tttatccctg gtggcattgg ttgctggaga gagaaaaccc
    10981 ccgcacgttg caggtatgca cctgacaaca tcacgggggc taatcttgaa cccaaacaac
    11041 tcaagaatag ccgcgaaacg ttggcattac aacacaggcg gctatatgac gctcgcagaa
    11101 ctgggcatgg ccttctggca tgatttagcg gctccggtca ttgctggcat tcttgccagt
    11161 atgatcgtga actggctgaa taagcggaag taacgtgtca tgcgggcgtc aggctgccgt
    11221 aatggcaatt tgcgcccgga tcaggccgca gaggttaaac tctgcggcct ttttcgtgct
    11281 tactgcgggt aaggcaccca gtcgccgccg ttcaggcgaa cgtacggttt atcctggtat
    11341 tgaataacta ctgcatttga gttctcggag accggtgctg tttgtggcaa cccactggtg
    11401 agttttttcc agtcaacatt gtcttcggtg aaaatcttgc catcaagaac gcgaaccacc
    11461 agatcggaga tagccaggaa gctgctcggt tggtcgatga caatcggtgc cccctgatgt
    11521 ggtgccttca tgccgaagaa tttcacccca acggggacgt ctgtgataga cgggctaggg
    11581 atatcacgta ggccagatac ctgcattctg tcgcccttca gcgcgccgcc gtgttccggc
    11641 accacgacca ccatcacttt acgacccgat ttctccagtt cagtaaagaa ggcgtccagt
    11701 tcatcaaaga atttctgcgc ccgcgctttg taatccgctg ttttgctgac ccccggataa
    11761 tggttgccgt catgcagtgg aagcgtgttg tagaacgtgg cactacggct gtttttatct
    11821 ttttcggtaa cgtccagcca gcggttaagc acggtggtat cgtcataaac cggcgaacca
    11881 tcaaagccca gcaaaataac cggcagattt gtttgatcca tcaattcagt ctgcatgccg
    11941 ccattttcgc gaacttcttt caaaaaaccg ccgaactggc cgttatgtcc catcatcagg
    12001 tgctgggtaa agcccagttt cgaaaggtta tcaaacagat agcagtcgtt atttgccggt
    12061 tgatacagat tagtgtgcga agtctgcccg cagctggcgc gcagtaaacg gatcgccgcc
    12121 gggccactgt aggaggtggc ggagttaaag ttcttgaact caatatcgaa atgcgaccac
    12181 agtggatgcg acatcaaccc ggcggcttct atatccgacc aggaaagcga acagatgtta
    12241 atcaccagta gttcaaatgg ctgagcatca gcgggcagcg aagacgggaa ggtcgattta
    12301 cgtttcgcct ccgcgttata gaaattattc agccaggcgt taaggttcgc cgttgttggc
    12361 ggtgtagttt gtgcgggcat atcacccact accggtgcgc cacccgtcgt ctcaacggtt
    12421 gccgctgcgt taccacccgt cgttgttaca gtggtcgtcg gttgtccggc tggccacaag
    12481 gagaaacttg gtcccgccag ggtaagtacg ttcagccata gcagtatggc aaccacaaaa
    12541 acggtaatgc gaatccattg tgacaggaat aaccaggcca ctaataaaac aaaaatggcc
    12601 ccaatcatct gccagttaat aaagcgtgtg acaaggtcga ttaaataatc ggtactgaac
    12661 cccgccacct gcgaaccctg gctcattatg ctttccgggc caggcaacca ggtgtcatgc
    12721 cagaacaaag caaagccgat cggcagggca atccagtggc gcaagcgatg caggctgtag
    12781 cgcggaatgg gcatcagcag aaacgcggca aacaccaaat tgaggagcgg atggaagtta
    12841 agatatcccg cccacaacag gccgaactta accagaaaat agaagttcca gccggaaagg
    12901 ccgcgccagt attgccagag ggaagaaggc atggcggtat tttgcgtaaa ttgagtcatt
    12961 ttttggttgc cctggctttt tccgtgcggc gtaatgtccc ggctggttta acataacgag
    13021 gtttagcaaa gaacaaacgt aaggtgtcgc gaatgcgtcg caaagagtgc cgcgccagat
    13081 agcccagcgg gaaaaatatc agtgcgcaaa cgacaataat ttcaatgata tcgctgatgg
    13141 tcatcatgat gagcgctcca cagcatcatc taacagtcgc atgggttctg gtattcgtcg
    13201 ccagtggcga ccatcgtgct cggcattgat gaccggttta gaactttgcg ttaaaggcag
    13261 cggcatgccc cattgttctg gggcaagcag gcgcatctgc accagctcgg cactgatttg
    13321 atcatcttca aaccagacca tacggtttga gaaaatgtcg ccagtaggca atgggaaaat
    13381 atgattcaac gcggtatcca gatcgttaat ccgacagaat gagagaaaca gcaccagccg
    13441 attaccgcca atggtcatga tatcgccggt acggttaggg cgacacagcg tcagggcttg
    13501 ttcaacgcgg atacccggta ccggacgtag ggcaaccaga acgcctttac cgtgggcagg
    13561 taatagaggg ttattcatca tgttgttgac ggcattacag aacacatccc acttctggaa
    13621 accacgcagt ttgagcggct gggtcattga cagcaaggta gtgatatctt ccggcacata
    13681 gcgactaaac ttctgccctt gcacgctttc gatcatcgtc agacaacggg agagtggcgc
    13741 attccacgga ataaccatat ttgcaccgca ggccaataac aaacgttcat cggtggcgcg
    13801 caggctagcg gtattttccc gcacgaggat tttcatcgca ctaccgcgct ggcgacgcag
    13861 ggtatgaatg ctgcgggcca gtggctcgat ttgcgcattt tgctgtaaag aaaagaccac
    13921 cgtcgccgcc tgagcggtac gggcttcatt gaacaggact tcgttattgt tgaacagttg
    13981 ccagtgttcc gatagcggcg gcgcaccttc cagtacagca acattactca gaatgcgttt
    14041 ttcgtcgctg cgtggttgga tctccgcctc ttcgctttga actaatgtcc agataccatt
    14101 ttgttgctga acgctaagct gctgacgggc gctgacccct ttttcgttgc accagaaggc
    14161 aatatccagc aaatgttggt caccctgaaa acgcaaactg gcaagaccaa aaagtgaacg
    14221 gtattcctca agcaacaatg aaaattgttt atcgttatta tttccgggat taattaccaa
    14281 aagcgaacaa tgggttaacc tgctccattt attcatttta tccaaccatg agcgaagccg
    14341 ctcggcagga atgttttgcc atgcgttatt tgcgcaaaca agaataaaaa ggtaattatg
    14401 gggatcaata gaacactgca aatcacgggt caaatagtat agaccttttt catgatttag
    14461 cattgaaaat aattttattt tttccggccc ttgataatca tctaattgaa agattttcgc
    14521 cggatcgctg tccatgctaa tgaccgcgac gtgtgcggtt tcagcctggg atgcaattgt
    14581 ttgattcgcc agactgatag catcttcatg gcgatcgacg ttaaaccacc agacgccgcc
    14641 tgctggcata tgtcgcagct catcccataa tgatgagata ccgatagaga atacagggcc
    14701 cacaatgtcc ctcatgtcac cattttgtct gattatcagt ttactagcga aagctaagaa
    14761 ataaacctac cattgaaatt aaaacttatc agatttagca tgtgaatcaa tttagaagat
    14821 cacaagacgt gtgattttag tcttttcgtt tttaactttt tctgttgcgt aacggaaagt
    14881 caaaaagtga gcaaattccc gtctcgccgt aaacaataaa ccggcgaaat gctcacggtt
    14941 agaattgtct catgaacggt acggttattt catagggatc aagcaaaatg aataacaatg
    15001 aaccagatac tctgcctgat cccgcgatag gctatatctt ccagaatgat attgtggcgt
    15061 taaagcaggc attttcactg cctgatattg attatgccga tatttcccaa cgcgaacagt
    15121 tggccgcggc attaaaacgc tggccgttgc tggcagagtt tgcgcaacaa aagtagggga
    15181 ttggtgaatg gccgtactgg gattgcaggg ggtgcgggga ggcgtgggga caacaaccat
    15241 caccgccgca ttagcctggt cattacaaat gttgggagaa aatgtcctgg tggtcgatgc
    15301 ctgcccggac aacttgttgc gcctgtcatt taatgttgat tttacccacc gtcagggctg
    15361 ggccagagcg atgctggatg gccaggactg gcgtgacgct gggttgcgct acacctcgca
    15421 gctcgatttg ctgccttttg gtcagttatc cattgaagaa caagaaaatc cacagcacag
    15481 gcaaacccgg ctgagcgata tttgctccgg cttacagcaa ctaaaagcca gcgggcgtta
    15541 ccagtggatt ttaatcgact taccgcgtga tgcctcgcag ataacccacc agctgctgag
    15601 tttgtgcgat cactcgctgg caatcgtcaa tgtggatgcc aactgccata tccgactgca
    15661 tcagcaagcg ctgccggatg gcgcacatat tttgattaat gacttccgta ttggcagtca
    15721 ggttcaggac gatatttacc agctttggtt gcaaagccag cgccgattac tgccgatgct
    15781 cattcatcgt gatgaagcga tagctgaatg cctggcggct aagcaaccag taggtgaata
    15841 tcgcagtgat gcgctggcgg ctgaagagat actgacgctg gcgaactggt gcctgttgaa
    15901 ctactccggg ctgaaaacgc cagtcgggag tgcatcatga gtatcctgac ccggtggttg
    15961 cttatcccgc cggtcaacgc gcggcttatc gggcgttatc gcgattatcg tcgtcacggt
    16021 gcgtcggctt tcagcgcgac gctcggctgt ttctggatga tcctggcctg gatttttatt
    16081 ccgctggagc acccgcgctg gcagcgtatt cgcgcagaac ataaaaacct gtatccgcat
    16141 atcaacgcct cgcgtccgct ggacccggtc cgttatctca ttcaaacatg ctggttactg
    16201 atcggtacat cgcgcaaaga aacgccgaaa ccgcgcaggc gggcattttc aggtctgcag
    16261 aatattcgtg gacgttacca tcaatggatg aacgagctgc ctgagcgcgt tagccataaa
    16321 acacagcatc ttgatgagaa aaaagagctc ggtcatttga gtgccggggc gcggcggttg
    16381 atcctcggta tcatcgtcac cttctcgctg attctggcgt taatctgcgt tactcaaccg
    16441 tttaacccgc tggcgcagtt tatcttcctg atgctgctgt ggggtgtagc gctgatcgta
    16501 cggcggatgc cggggcgctt ctcggcgcta atgttgattg tgctgtcgct gaccgtttct
    16561 tgccgttata tctggtggcg ttacacctct acgctgaact gggacgatcc ggtcagcctg
    16621 gtgtgcgggc ttattctgct cttcgctgaa acgtacgcgt ggattgtgct ggtgctcggc
    16681 tacttccagg tcgtatggcc gctgaatcgt cagccggtgc cattgccgaa agatatgtcg
    16741 ctgtggccgt cggtggatat ctttgtcccg acttacaacg aagatctcaa cgtggtgaaa
    16801 aataccattt acgcctcgct gggtatcgac tggccgaaag acaaactgaa catctggatc
    16861 ctcgatgacg gcggcaggga agagtttcgc cagtttgcgc aaaacgtggg ggtgaaatat
    16921 atcgcccgca ccactcatga acatgcgaaa gcgggcaaca tcaacaatgc gctgaaatat
    16981 gccaaaggcg agttcgtatc gattttcgac tgcgaccacg taccaacgcg atcgttcctg
    17041 caaatgacca tgggctggtt cctgaaagag aaacagctgg cgatgatgca gacgccgcac
    17101 cacttcttct cgccggaccc gtttgaacgc aacctggggc gttttcgtaa aacgccgaac
    17161 gaaggcacgc tgttctatgg tctggtgcag gatggcaacg atatgtggga cgccactttc
    17221 ttctgcggtt cctgtgcagt aattcgtcgc aaaccattgg atgaaattgg cggtattgct
    17281 gtcgaaacgg taaccgaaga tgcgcacacg tctctgcgcc tgcaccgtcg tggctacacc
    17341 tctgcatata tgcgtattcc gcaggcggcg gggctggcga ccgaaagtct gtcggcgcat
    17401 atcggtcagc gtattcgctg ggcacgcggg atggtgcaaa tcttccgtct cgataacccg
    17461 cttaccggta aagggctgaa attcgcccag cggctgtgct acgtcaacgc catgttccac
    17521 ttcttgtcgg gcattccacg actgatcttc ctgactgcgc cgctggcgtt cctgctgctt
    17581 catgcctaca tcatctatgc gccagcgttg atgatcgccc tgttcgtgct gccgcatatg
    17641 atccatgcca gcctgaccaa ctcgaagatc cagggcaaat atcgccactc tttctggagt
    17701 gaaatctacg aaacggtgct ggcgtggtat atcgcaccac cgacgctggt ggcgctgatt
    17761 aacccgcaca aaggcaaatt taacgtcacc gccaaaggtg gactggtgga agaagagtac
    17821 gtcgactggg tgatctcgcg gccctacatc ttccttgttc tgctcaacct ggtgggtgtt
    17881 gcggtcggca tctggcgcta cttctatggc ccgccaaccg agatgctcac cgtggtcgtc
    17941 agtatggtgt gggtgttcta caacctgatt gttcttggcg gcgcagttgc ggtatcggta
    18001 gaaagcaaac aggtacgccg atcgcaccgc gtggagatga cgatgcccgc ggcaattgcc
    18061 cgcgaagatg gtcacctctt ttcgtgtacc gttcaggatt tctccgacgg tggtttgggg
    18121 atcaagatca acggtcaggc gcagattctg gaagggcaga aagtgaatct gttgcttaaa
    18181 cgcggtcagc aggaatacgt cttcccgacc caggtggcgc gcgtgatggg taatgaagtt
    18241 gggctgaaat taatgccgct caccacccag caacatatcg attttgtgca gtgtacgttt
    18301 gcccgtgcgg atacatgggc gctctggcag gacagctacc cggaagataa gccgctggaa
    18361 agtctgctgg atattctgaa gctcggcttc cgtggctacc gccatctggc ggagtttgcg
    18421 ccttcttcgg tgaagggcat attccgtgtg ctgacttctc tggtttcctg ggttgtatcg
    18481 tttattctgc gccgcccgga gcggagcgaa acggcacaac catcggatca ggctttggct
    18541 caacaatgat gataacgcga tgaaaagaaa actattctgg atttgtgcag tggctatggg
    18601 gatgagtgcg ttcccctctt tcatgacgca ggcgacgcca gcaacgcaac cactgatcaa
    18661 tgctgagcca gctgtagccg cccagacgga acaaaatccg caggtggggc aagtgatgcc
    18721 gggcgtgcag ggcgctgatg cgccagtcgt ggcgcagaac ggtccttcgc gtgatgtgaa
    18781 gctgaccttt gcgcaaattg cgcctccgcc gggtagcatg gtgctacgtg gcattaaccc
    18841 gaacggcagc attgagtttg gtatgcgcag cgatgaagtg gtgacgaagg cgatgctcaa
    18901 cctcgaatac atgccatcgc catcgttact gcctgtccag tcgcagttaa aggtttatct
    18961 caatgatgag ctgatgggcg tactgccagt gaccaaagaa cagttgggta aaaaaacgct
    19021 ggcgcaaatg cccattaacc cactgtttat taccgacttc aaccgtgtgc ggctggagtt
    19081 tgtcggccat tatcaggacg tgtgcgaaaa cccggccagc accacgcttt ggctggatgt
    19141 tgggcggagc agtggactgg atctgaccta tcagaccctg aatgtgaaga atgacctgtc
    19201 acacttcccg gtgccattct ttgacccgcg cgataaccgt actaacacct tgccgatggt
    19261 ctttgcgggt gcgccggatg ttgggctgca acaagcatct gccattgtcg cctcgtggtt
    19321 tggttcgcgt tctggctggc gtgggcagaa cttcccggtg ctctataacc aactgccgga
    19381 tcgtaatgcc attgtctttg caaccaacga caaacggccg gacttcctgc gcgatcatcc
    19441 ggcggtaaaa gccccggtga ttgagatgat caaccatccg cagaatcctt acgtcaaact
    19501 gctggtggtg tttggtcgtg acgacaaaga cctgttgcag gcagcgaaag gtatcgctca
    19561 gggtaacatt ctgttccgtg gtgaaagcgt ggtagtgaat gaagtgaaac cgctgctacc
    19621 gcgtaagccg tacgatgcgc cgaactgggt acgtaccgat cgtccggtca catttggcga
    19681 actgaaaacc tatgaagaac agttacaatc cagcggtctt gagccagcag cgattaacgt
    19741 ttcgctaaac ctgccgccgg atctctacct gatgcgcagt accggcattg atatggatat
    19801 taattaccgc tacaccatgc cgccggtgaa agacagttcg cggatggata tcagcctgaa
    19861 taaccagttc ctgcaatcct tcaacctgag cagcaaacag gaggcgaacc gcctgctgct
    19921 gcggattccg gtattacaag gtttgctgga tggcaaaaca gatgtctcta ttccggcgct
    19981 gaaactgggc gcgaccaacc agctgcgctt cgactttgag tatatgaacc cgatgccggg
    20041 cggttcggtg gataactgta ttaccttcca gccggtgcag aatcatgtgg tgattggtga
    20101 cgactccacc atcgacttct cgaagtatta ccacttcatc ccgatgccgg atctacgcgc
    20161 ctttgctaac gcgggcttcc cattcagccg gatggcggat ctgtcgcaaa ccatcaccgt
    20221 gatgccgaaa gcgcctaacg aagcacagat ggaaacgttg ctgaatactg ttggttttat
    20281 cggcgcacag acgggcttcc cggcgattaa tctgacggtg accgatgatg gcagcaccat
    20341 tcagggcaaa gatgccgaca tcatgatcat cggtggtatc ccggacaaac tgaaagacga
    20401 taagcagatc gacctattgg tgcaggcgac cgaaagctgg gtgaaaacac cgatgcgcca
    20461 gaccccgttc cccggcattg tgccggacga gagcgatcgc gcggcagaaa cccggtcaac
    20521 gctgacctct tccggtgcga tggcggcggt gattggcttc cagtcgccgt ataacgacca
    20581 gcgcagcgtg attgcgctgt tggcagatag cccacgcggt tatgaaatgc ttaacgatgc
    20641 ggtgaacgat agcggcaaac gcgccaccat gttcggttcg gtcgcggtga tccgcgagtc
    20701 cggtatcaac agcctacgtg ttggcgacgt ttattacgta ggtcatctgc cgtggttcga
    20761 gcgcgtgtgg tatgcgctgg caaaccatcc gattctgctg gcggtgctgg cggctatcag
    20821 tgtgatattg ctggcatggg tactgtggcg tctgctgcga attattagtc gtcgtcgtct
    20881 taacccggat aacgagtaat tgaagatgaa tgtgttgcgt agtggaatcg tgacgatgct
    20941 gttgttggct gcctttagtg ttcaggcagc ctgtacctgg cctgcctggg agcagtttaa
    21001 aaaggattac atcagtcagg aagggcgcgt catcgacccc agcgacgcgc gcaaaatcac
    21061 cacctccgaa gggcaaagtt acggtatgtt ctttgccctg gcggctaacg accgtgcagc
    21121 tttcgataat attctcgact ggacgcagaa caatctcgct cagggttctt taaaagaacg
    21181 tttgcccgcc tggctgtggg gcaagaaaga gaacagtaag tgggaagtgc tggacagcaa
    21241 ttcggcctcc gatggtgatg tctggatggc ctggtcgttg ctggaggcgg ggcgtttgtg
    21301 gaaagagcag cgttataccg acatcggcag cgcgttgcta aaacgtatcg cgcgggagga
    21361 agtggtgacg gtgcctgggc tgggttccat gttgttaccg ggcaaagtgg gttttgctga
    21421 ggataacagc tggcgtttta accccagcta cctgccgccg acgctggcgc agtatttcac
    21481 ccgctttggc gcgccgtgga ctacgctgcg cgaaaccaat caacgtttat tgctggaaac
    21541 cgccccgaaa ggcttttcgc cagactgggt gcgttatgag aaagacaaag gctggcagct
    21601 aaaagccgaa aaaacattga tcagcagcta cgacgccatc cgcgtttaca tgtgggtagg
    21661 catgatgcct gacagcgatc cgcagaaagc gcggatgctc aaccggttta aaccgatggc
    21721 gacattcact gagaaaaacg gttatccgcc ggaaaaagtg gatgtggcta cggggaaagc
    21781 gcagggtaaa ggaccagtcg gtttttctgc cgccatgctg ccctttttac aaaaccgcga
    21841 tgcgcaggcc gttcagcgtc agcgcgtggc cgataacttt cccggcagcg atgcctatta
    21901 caactatgtg ctgaccctgt ttggacaagg ctgggatcaa caccgtttcc gcttctcgac
    21961 aaaaggtgag ttattacctg actggggcca ggaatgcgca aattcacact aaacatattc
    22021 acgctttccc tcggtctggc cgtcatgccg atggtcgagg cagcaccaac cgctcagcaa
    22081 cagttgctgg agcaagttcg gttaggcgaa gcgacccatc gtgaagatct ggtgcaacag
    22141 tcgttatatc ggctggaact tattgatccg aataacccgg acgtcgttgc cgcccgtttc
    22201 cgttctttgt tacgttaggg cgatattgat ggcgcgcaaa aacagctcga tcggctgtcg
    22261 cagttagcgc cgagttcaaa tgcgtataaa tcgtcgcgga ctacgatgct actttccacg
    22321 ccggatggtc gtcaggcact gcaacaggca cgattgcagg cgacgaccgg tcatgcagaa
    22381 gaagctgtgg cgagttacaa caaactgttc aacggtgcgc cgccggaagg tgacattgct
    22441 gtcgagtact ggagtacggt ggcgaaaatt ccggctcgcc gtggcgaagc gattaatcag
    22501 ttaaaacgca tcaatgcgga tgcaccgggc aatacgggcc tgcaaaacaa tctggcgcta
    22561 ttgctgttta gtagcgatcg ccgtgacgaa ggttttgccg tcctggaaca gatggcaaaa
    22621 tcgaacgccg ggcgcgaagg ggcctctaaa atctggtacg ggcagattaa agacatgccc
    22681 gtcagtgatg ccagtgtgtc ggcgctgaaa aaatatctct cgatctttag tgatggcgat
    22741 agcgtggcgg ctgcgcaatc gcaactggca gaacagcaaa aacagctggc cgatcctgct
    22801 ttccgcgctc gtgcgcaagg tttagcggcg gtggactctg gtatggcggg taaagccatt
    22861 cccgaactac aacaggcggt gcgggcgaac ccgaaagaca gtgaagctct gggggcgctg
    22921 ggccaggcgt attctcagaa aggcgatcgc gccaatgcag tggcgaatct ggaaaaagcc
    22981 ctcgcactgg acccgcacag cagcaacaac gacaaatgga acagtctgct gaaagtaaac
    23041 cgctactggc tggcgatcca gcagggcgat gctgcgctga aagccaataa tcctgaccgg
    23101 gcagaacgcc tgttccagca ggcgcgtaat gtcgataaca ccgacagtta tgcagtgctg
    23161 gggctgggcg atgtggcgat ggcgcgaaaa gattatcccg ccgccgaacg ttattatcag
    23221 cagaccttgc gtatggacag cggcaacact aacgccgtgc gcgggctggc aaatatttac
    23281 cgccagcaat cgccagaaaa agctgaagcg tttatcgcct cgctctctgc cagtcagcgg
    23341 cgtagcattg atgatatcga acgcagcctg caaaacgacc gtctggcaca gcaggcagag
    23401 gcactggaaa accagggcaa atgggcgccg gcggcagcac ttcagcggca acgactggcg
    23461 ctggaccccg gcagcgtatg gattacttac cgactttcgc aggatctctg gcaggccgga
    23521 caacgcagcc aggccgatac gttaatgcgc aatctggcgc agcagaagtc gaacgacccg
    23581 gagcaggttt acgcttacgg gctgtacctc tctggtcatg accaggacag agcggcgctg
    23641 gcgcatatca acagcctgcc gcgcgcgcag tggaacagca atattcagga gctggttaat
    23701 cgactgcaaa gcgatcaggt gctggaaacc gctaatcgcc tgcgagaaag cggcaaagaa
    23761 gctgaagcgg aagcgatgct gcgtcagcaa ccaccttcca cgcgtattga cctcacgctg
    23821 gctgactggg cgcagcagcg acgtgattac accgccgccc gcgctgcata tcagaatgtc
    23881 ctgacgctgg agccaactaa cgccgatgcc attctggggc tgacggaagt ggatattgct
    23941 gccggtgaca cagcggcggc acgtagccag ctggcgaaac tgcccgctac cgataacgcc
    24001 tcgctgaaca cacagcggcg cgtggcgctg gcgcaggcgc agcttggaga taccgcagcg
    24061 gcgcagcaga cgtttaataa gttgatcccg caggcaaaat ctcagccacc gtcgatggaa
    24121 agcgcgatgg tgctgcgcga cggtgcgaag tttgaagcgc aggcgggcga tccaaagcag
    24181 gcgctggaaa cctacaaaga cgccatggtc gcatccggtg tgactacgac gcgtccgcag
    24241 gataacgaca cattcacccg actgacccgt aacgacgaga aagatgactg gctgaaacgc
    24301 ggcgtgcgca gcgatgcggc gggcctctat cgccagcagg atcttaacgt caccctcgag
    24361 cacgattact ggggttcgag cggcaccggt ggttactccg atctgaaagc gcacactacc
    24421 atgttgcagg tggatgcgcc gtattctgac gggcggatgt tctttcgcag tgatttcgtc
    24481 aatatgaacg tcggcagttt ctccactaat gccgatggca aatgggatga caactggggc
    24541 acctgtacat tacaggactg tagtggcaac cgcagccagt cggactccgg tgccagcgtg
    24601 gaggtcggct ggcgaaatga cgtctggagc tgggatatcg gtaccacgcc gatgggcttc
    24661 aacgtggtgg atgtggtcgg cggcatcagt tacagcgatg atatcgggcc gctgggttac
    24721 accgttaacg cccaccgtcg gcccatctcc agttctttgc tggcctttgg tgggcaaaaa
    24781 gactccccga gcaataccgg gaaaaaatgg ggtggcgtac gtgccgacgg tgtggggcta
    24841 agtctgagct acgataaagg tgaagcaaac ggcgtctggg catcgcttag tggcgaccag
    24901 ttaaccggta aaaatgtcga agataactgg cgcgtgcgct ggatgacggg ctattactat
    24961 aaggtcatta accagaacaa tcgccgcgtc acaatcggcc tgaacaacat gatctggcat
    25021 tacgacaaag atctgagtgg ctactcactc ggtcagggcg gttactacag tccgcaggaa
    25081 tacctgtcgt ttgctatacc ggtgatgtgg cgggagcgca cggaaaactg gtcgtgggag
    25141 ctgggggcgt ctggctcgtg gtcgcattca cgcaccaaaa ccatgccgcg ttatccgctg
    25201 atgaatctga tcccgaccga ctggcaggaa gaagctgcgc ggcaatccaa cgatggcggc
    25261 agcagtcagg gcttcggcta cacggcgcgg gcattacttg aacgacgtgt tacttccaac
    25321 tggtttgttg gcacggcaat tgatatccag caggcgaaag attacgcacc cagccatttc
    25381 ctgctctacg tacgttattc cgccgccgga tggcagggtg acatggattt accgccgcag
    25441 ccgctgatac cttacgccga ctggtaagtt ttcagatagc gcctctctta atgccgctgc
    25501 gatcgggtat actcgggcgg caatctggga tttccggggg gagacaattt gcgcgtaagt
    25561 cgctcgttaa caatcaagca gatggcaatg gtggcagccg ttgtcctggt gttcgttttt
    25621 attttttgca ccgttttgct gttccatctg gtccagcaga atcgctataa cacggctacg
    25681 caactggaaa gcattgctcg ctctgtacgc gaacccttat cttcagctat tttgaaaggc
    25741 gatattcccg aagcggaagc tattcttgcc agcattaaac cggcaggcgt ggtcagccgt
    25801 gccgatgtag tgctgcctaa ccagttccag gcgctgcgta aaagttttat tccagagcgc
    25861 ccggtgccgg taatggttac tcgcctgttt gagctaccgg ttcaaatctc gctgggcgtt
    25921 tactcgctcg aacgtccggc aaacccgcag ccaattgcct atctggtact acaggcggat
    25981 tccttccgta tgtataagtt cgtgatgagc accctctcaa cgttagtgac catttactta
    26041 cttttgtcgc ttatcctgac cgtcgccatc agctggtgca ttaaccgcct gattttgcat
    26101 ccgttacgca atattgctcg cgaacttaac gccatcccag cccaggagct tgttggtcac
    26161 caactggcat taccgcgtct gcatcaggac gatgaaatcg gtatgttggt gcgcagttac
    26221 aacctcaacc agcaattgct gcagcgccat tatgaagaac agaacgaaaa tgcgatgcgc
    26281 ttcccggtgt cggatttgcc gaacaaagcc ttgctgatgg agatgctgga gcaggttgtc
    26341 gcgcgtaaac aaaccaccgc gctgatgatc atcacctgtg aaaccctgcg tgatactgcg
    26401 ggcgtgctga aagaggcgca acgagaaatt ctgctgctga cgctggtgga aaaactcaaa
    26461 tcggtactgt cgccacgtat gatcctcgcg cagattagcg gttatgactt tgctgtcatt
    26521 gccaacggtg tacaggaacc gtggcacgca atcaccttag gtcagcaagt gctcactatc
    26581 atgagcgagc gcctgccgat tgaacgtatt caactccgtc cgcactgtag cattggcgtg
    26641 gcgatgttct acggcgatct caccgccgaa cagctttaca gtcgcgctat ttctgcggca
    26701 tttaccgctc gccataaagg caagaatcag attcagttct ttgatccgca gcagatggaa
    26761 gccgcccaga agcggttgac ggaagagagc gatatcctta atgcactgga aaatcatcag
    26821 tttgctattt ggttacagcc acaggtcgag atgaccagcg gtaaactggt cagtgcggaa
    26881 gtgttactgc gtatccagca accggatggc agttgggacc tgccggatgg cttaatcgat
    26941 cgcattgagt gctgtgggct gatggttacc gtcggtcact gggtgctgga agagtcctgt
    27001 cgattgcttg cagcctggca agagcgcggc attatgctgc ccttgtcggt aaacctctct
    27061 gcgctgcaac tgatgcaccc aaatatggtg gcggatatgc tggaactgtt aacccgctat
    27121 cgcattcaac cgggaacact gattctggaa gtgacagaaa gccgacgtat tgacgaccct
    27181 catgctgcgg tggcaatcct ccgtccgctg cgcaatgccg gagttcgggt ggcgctggat
    27241 gatttcggca tgggctacgc agggctgcgt cagctgcagc atatgaaatc gttgccaatc
    27301 gacgtactga aaatcgacaa aatgtttgtt gaaggcttgc cggaagatag cagcatgatt
    27361 gctgcaatta tcatgctggc gcagagcctg aacttacaaa tgattgccga aggcgtggag
    27421 actgaagcac aacgcgactg gctggcaaaa gcgggcgttg gtattgccca gggcttcctt
    27481 tttgctcgcc cactccctat taaaatcttc gaagagagtt acctggaaga aaagtagcta
    27541 ccccaaactg attacaaaac tttaaaaagt gctggtttgt gcgagccagc tcaaactttt
    27601 taaccttttt gtttcaatta tgatccaggt acatttctgt gatgttgtct gggtgttatt
    27661 ttaaggccgc aggtacctca taaccttaca agacctgtag ttttactaaa ggacacccta
    27721 tgaaaacctc tctgtttaaa agcctttact ttcaggtcct gacagcgata gccattggta
    27781 ttctccttgg ccatttctat cctgaaatag gcgagcaaat gaaaccgctt ggcgacggct
    27841 tcgttaagct cattaagatg atcatcgctc ctgtcatctt ttgtaccgtc gtaacgggca
    27901 ttgcgggcat ggaaagcatg aaggcggtcg gtcgtaccgg cgcagtcgca ctgctttact
    27961 ttgaaattgt cagtaccatc gcgctgatta ttggtcttat catcgttaac gtcgtgcagc
    28021 ctggtgccgg aatgaacgtc gatccggcaa cgcttgatgc gaaagcggta gcggtttacg
    28081 ccgatcaggc gaaagaccag ggcattgtcg ccttcattat ggatgtcatc ccggcgagcg
    28141 tcattggcgc atttgccagc ggtaacattc tgcaggtgct gctgtttgcc gtactgtttg
    28201 gttttgcgct ccaccgtctg ggcagcaaag gccaactgat ttttaacgtg atcgaaagtt
    28261 tctcgcaggt catcttcggc atcatcaata tgatcatgcg tctggcacct attggtgcgt
    28321 tcggggcaat ggcgtttacc atcggtaaat acggcgtcgg cacactggtg caactggggc
    28381 agctgattat ctgtttctat attacctgta tcctgtttgt ggtgctggta ttgggttcaa
    28441 tcgctaaagc gactggtttc agtatcttca aatttatccg ctacatccgt gaagaactgc
    28501 tgattgtact ggggacttca tcttccgagt cggcgctgcc gcgtatgctc gacaagatgg
    28561 agaaactcgg ctgccgcaaa tcggtggtgg ggctggtcat cccgacaggc tactcgttta
    28621 accttgatgg cacatcgata tacctgacaa tggcggcggt gtttatcgcc caggccacta
    28681 acagtcagat ggatatcgtc caccaaatca cgctgttaat cgtgttgctg ctttcttcta
    28741 aaggggcggc aggggtaacg ggtagtggct ttatcgtgct ggcggcgacg ctctctgcgg
    28801 tgggccattt gccggtagcg ggtctggcgc tgatcctcgg tatcgaccgc tttatgtcag
    28861 aagctcgtgc gctgactaac ctggtcggta acggcgtagc gaccattgtc gttgctaagt
    28921 gggtgaaaga actggaccac aaaaaactgg acgatgtgct gaataatcgt gcgccggatg
    28981 gcaaaacgca cgaattatcc tcttaatctc accacttatg cccgcactcc cttccccgag
    29041 tgcgggtgtt tgcgcataat tgacccctgt gcctgaactt accacctggg tgagttcagg
    29101 tttatttcac ttcttccgtg acattttcat gttcttgcgg tctaacacga agtgttttta
    29161 acgtcattta gactgactga caacgggcag ttttttatta ccaggatagt tgatcagggg
    29221 ttcacatgca gggcacaaaa attcgacttt tagcgggcgg tttgctgatg atggccactg
    29281 ctggctatgt gcaggcagat gcgctccagc ctgatccagc atggcaacag gggacgcttt
    29341 ccaacggttt acagtggcaa gtgctgacca ccccccagcg tcccagcgat cgtgttgaaa
    29401 ttcgcctgct ggttaatacc ggttcgctcg ccgaaagtac acaacagagc ggttacagtc
    29461 acgccatccc tcgtattgcg ctaacgcaaa gcggtggcct tgacgcagca caggcgcgtt
    29521 cattgtggca gcaggggatc gaccctaaac gcccgatgcc gccggtaatt gtctcttatg
    29581 acaccacgct gtttaatctg agtttgccca ataaccgtaa cgatttgctg aaagaagcgc
    29641 tctcttatct ggcaaatgcc actggcaaat tgaccatcac accagaaacc atcaaccacg
    29701 cgctgcaaag tcaggacatg gtggcaacct ggcctgccga tactaaagag ggctggtggc
    29761 gctatcgtct gaaagggtca accttgttag gtcacgatcc tgccgatccg ctgaaacaac
    29821 ccgttgaagc ggaaaaaatt aaagatttct atcagaaatg gtacaccccg gatgcaatga
    29881 cgctactggt ggtgggaaac gtggatgcgc gctcggttgt cgaccaaatc aacaaaacgt
    29941 ttggcgaact gaaaggcaaa cgtgaaacgc cagctccggt gccgacgctt tctccgctgc
    30001 gtgcggaagc ggtgagtatt atgactgacg cggtgcgtca ggaccggtta tctatcatgt
    30061 gggatacgcc gtggcagccg attcgtgaat cagccgcact gctgcgctac tggcgtgcgg
    30121 acctggcccg cgaggcgctg ttctggcatg ttcagcaagc gttaagcgcc agtaacagca
    30181 aagacatcgg tcttggattt gactgccgtg tgctgtatct gcgtgcgcag tgtgccatca
    30241 acatcgaatc accaaacgac aagctgaaca gcaaccttaa tctggtggcg cgtgaactgg
    30301 cgaaggttcg cgataaaggt ctgccggaag aagagttcaa tgcgttagtg gcgcaaaaga
    30361 aactggagct gcagaaactg tttgccgcct atgcgcgggc tgataccgat attctgatgg
    30421 gtcagcggat gcgttcgttg caaaatcagg tcgtcgatat cgcgccggag cagtatcaga
    30481 aactgcggca ggatttcctt aacagcctga cggtggagat gttaaatcag gatctgcgtc
    30541 agcagttgtc gaatgatatg gcgttaatac tgctgcagcc gaaaggcgag ccggaattta
    30601 acatgaaagc gttgcaggcg gcctgggatc aaatcatggc cccatcgact gctgctgtcg
    30661 ccacggatga cgtacatcct gaagtgacgg atattccacc tgcacagtaa tgcctgatgg
    30721 tgatgagtta gcacaaccat caggtattta tggatgagct ggatagaggg gtaacacttt
    30781 atccagcctt ttgcatatgc tgcgtttacg ctggcatcgc ctcacgcggg ataatcgcgc
    30841 cgcgatactg aataacggta cttgcggtca ggtgcccgcg tttcgccgcg ttttccgcac
    30901 tgccgcccgt caaacgtacc gccagataac cggcgctgaa agagtcgcca gctgcggtgg
    30961 tatcgatcac tttttctttc ggcagtttca ccgccggaac atccactaac ccttcgccag
    31021 caatggacac caggcaagaa tccgccccgc gtttcaccac cacttctttc acgcccgcgt
    31081 tatgggtgcg cgcaatgacg tcttccaccg gctgttgacc ccacagcgcg tcttcatcgt
    31141 ccagcgtcag gaaggcgata tccgtgcatt ccagcatttg ttggtacacc tgctgtgtct
    31201 cttctttgct ggcccacagg cgcggacgat agttattgtc gaaaatcact tttccgccgt
    31261 tggcgcggca ttcgcgcagc agggaaagca gcttttcgcg gctggtcggg cttaagatcg
    31321 ccaggctaat cccgctcagg tagagataat cgaaattcgc cagctcttcg caaatcgccg
    31381 tagactgctc actctccagc cagaatttgg cggcggcttc gttccgccag tagtagaacg
    31441 tacgctcgcc ggtgctgtcg gtttcaatgt agtaaaggcc cggcagacgg ttttccatcc
    31501 gttgggtcag ggaaatatca acgttctcgc cgtgccaggc gtccagcatc tgctggctaa
    31561 aactgtccgt tcccagcgcc gttacgtaat gaacggttaa tgccgcagga tcgacctgac
    31621 gggcgatata gacggaagtg ttcagggtat cgccgccgaa accgcgctta acgtccgcgc
    31681 ctttctcgga aagctcaatc atgcattcgc caatcacggc aatctttttg gacatagtcg
    31741 tgaacctgat ctgtaaaaaa ttagcgttag tttgcgctgt ggtggtttgc tggtcaacaa
    31801 tattaaaaca gtgttccatt atttttttga gccagaacgt attcctgaaa gattccgttg
    31861 tggagtgagg aaatttaccc cggccaggcg gtaaagttct gcccttacgc gccgataatc
    31921 tttgtcgagt ccgggtagca tcacttttaa acacaggaca tctttgatga taaggcaggt
    31981 tatccagcga ataagcaacc ctgaagcaag catcgagagc ttgcaggaac ggcgtttttg
    32041 gttgcagtgt gagcgtgctt acacctggca gccgatctat caaacatgcg ggcggttaat
    32101 ggccgtggag ctattaacgg tggtcacgca tcccttgaac ccttcgcaac gcctgccgcc
    32161 ggatcgctat tttactgaaa tcaccgtcag ccatcggatg gaggttgtga aagagcagat
    32221 tgatttgctg gcgcaaaaag ccgacttctt tatagagcac ggcctgctgg catcggtcaa
    32281 tattgatggc cctacgctca tcgccctgcg tcagcaacca aaaatcctgc gccaaattga
    32341 gcgtcttccc tggctgcgtt tcgaactggt ggagcatatc cgtctgccga aagattcaac
    32401 ctttgcctcg atgtgtgaat ttggcccgct gtggctgggt gattttggta ccgggatggc
    32461 aaatttctct gcactaagtg aagtgcgtta tgactacatc aaaatcgcgc gagaactgtt
    32521 tgtgatgctg cgtcagtcgc cggaaggacg cacactcttt tctcagcttt tacatctaat
    32581 gaatcgctat tgtcgcgggg tgattgttga gggcgtagaa acgccggaag agtggcgtga
    32641 tgtacagaac tcgcccgcat tcgccgcaca aggctggttt ctttcacgcc cggcaccgat
    32701 agaaacgctg aatacggcgg ttctggcgct ataagctgcc tcattttccg cctggctgga
    32761 ctatctttag gactggcaca ggaagaatat gaggaagcga acgatgagca aggcaggcaa
    32821 aataactgct gcgatttcag gggctttctt gttgttgatt gtcgtggcga tcattttgat
    32881 tgcaactttt gactggaatc gactcaaacc gaccatcaac cagaaagtct ctgcggagtt
    32941 gaatcgtccg ttcgctatcc gtggcgatct gggcgtggtg tgggagcggc aaaaacaaga
    33001 aactggctgg cgcagctggg tgccgtggcc tcatgtacat gcagaagaca tcattcttgg
    33061 caatccaccg gatattcccg aagtcacgat ggtgcatttg ccgcgagtag aggcaacgct
    33121 ggcaccgctg gcgctgctga ccaaaacggt ctggctgccg tggatcaagc tcgaaaagcc
    33181 cgacgcgcgc ctgattcgcc tctccgaaaa gaacaataac tggacgttta atctcgccaa
    33241 cgatgataac aaagacgcga atgcaaagcc gtcggcatgg tcgtttcggc tggataatat
    33301 tcttttcgat caagggcgga tcgccattga tgacaaagta agcaaagcgg atctggaaat
    33361 ttttgttgat ccgttaggca agccgctgcc gttcagcgaa gttactggat cgaaaggtaa
    33421 agcggataaa gaaaaggtgg gcgattacgt ttttggcctg aaggcgcagg gacgttataa
    33481 cggtgaaccg ctcacgggta cgggaaaaat aggcggtatg ctggcgctgc gtggcgaagg
    33541 gacgccgttt ccggtacagg ctgatttccg ttcaggtaat acccgtgttg cttttgatgg
    33601 cgtcgtgaat gacccaatga agatgggcgg tgtcgattta cggcttaaat tttctggcga
    33661 ttcactgggt gatctctatg aactgacggg cgttctgctg cccgataccc cgccgtttga
    33721 aacggatggt cggctggtag cgaaaatcga cactgaaaaa tcgtcggtct ttgattatcg
    33781 cggttttaat gggcgaattg gcgatagcga tatccacggt tctctggtct acaccaccgg
    33841 aaagccgcga ccaaaactgg aaggtgatgt cgagtcgcgg caattgcggc tggcggacct
    33901 gggaccgttg attggcgttg attcggggaa aggggcagaa aagtcgaaac ggtctgaaca
    33961 gaagaagggc gaaaaaagcg ttcagcctgc gggcaaagtg ctgccttatg accgcttcga
    34021 aaccgataaa tgggacgtta tggatgccga tgttcgcttc aaaggccgac gtatcgagca
    34081 tggcagtagc ctgccgatta gcgatctttc tactcatatc atcctcaaaa atgctgacct
    34141 gcgcctgcaa ccgctgaaat ttggcatggc gggcggcagc attgcggcga atatccatct
    34201 ggaaggcgat aaaaagccga tgcaggggcg ggcagatatt caggctcgtc gactgaaact
    34261 gaaagaactg atgcccgatg tggaactgat gcagaagacg ctgggggaaa tgaacggtga
    34321 cgcggaacta cgcggtagcg gtaactcggt ggcggcgctt ttaggcaaca gtaacggcaa
    34381 cctgaaactg ttgatgaatg acgggctggt gagccgcaac ctgatggaga ttgttgggct
    34441 gaatgtcggc aactacattg tcggtgcgat atttggtgac gatgaggtgc gggtgaactg
    34501 cgcggcggcg aatctgaata ttgccaacgg cgtagcgcgc ccgcagattt ttgctttcga
    34561 tactgagaac gcgttgatta atgttaccgg cacggcaagt tttgcttcgg aacagctgga
    34621 tttgactatt gatccggaga gtaaagggat tcggattatc acactgcgtt cgccgctgta
    34681 tgtgcgtggg acgtttaaaa atccgcaggc tggggtgaaa gccggaccgc tgattgcccg
    34741 tggtgccgtt gcggcggcac tggcaacgct ggtaacaccg gcggcggcgt tattggcact
    34801 gatctcacct tccgaagggg aggctaatca gtgtcggacg atattgtcgc agatgaagaa
    34861 gtgatgaggt tggattgtgt ttgctggtga gttcgggagc agcgtgttcc cctcacccta
    34921 atcctctccc caaaggggcg aggagactgt tttgtgcgtg ttgaaacaac gagtaccgct
    34981 tttccgttca ctttctgggg gagggctgtt atgttcgcga tataacatct cgctccgctt
    35041 ttctccctct ccctttcagg gagagggctg gggtgagggt ggctgcccac acgatactta
    35101 caacgactga tgttgcgtct catgggtcag cagcagggcg attaacgtca agccagccat
    35161 cgccgccaga tataacccca ccgcacctaa cccgtagtta gtctgcaacc aggctgcgat
    35221 atacggcgca acggaagccc cgagaatcga cgatacgttg taagagaacg atgctccggt
    35281 gtaacgcact tctgtcggga acagctctgg taacagcgcg cccatcggac cgaaggtcag
    35341 ccccatcaga cttaacccca gcagcaggaa ggcaaaaacc agaatcgggt tgccagaacc
    35401 gagcaaaggg ttaaaggcga atagcgcgaa caggatgagc agcgtggtga tgattaccat
    35461 gcttttacgg cgaccaaagg catcagccag taatccagcg actggcacca tcacgccaaa
    35521 accaataact gccatcatca acatccacaa cacttcgtta cgcggcaggc caagcccaac
    35581 tggcgcggcg gcggtactaa aggtcatgga gtagaccgtc atgatgtaaa acagcgtata
    35641 ggttgccagc ataatgaacg tacccagtac ggttacgcga acatgtttgg tcagcagcgt
    35701 acccagcggg atcttcacct gttttttcgc tttagcgact ttctcaaaca ccggcgactc
    35761 atgcagcgac acgcgaacat acaggccgat aatgaccagc accgccgaga agataaatgg
    35821 cacacgccag ccccagctca taaactgctc gtcggtcagt agccaggaaa gcagcaagaa
    35881 agtgccgttg gcaaagaaga agccaatcgg tgcgcccagc tgcgggaagg agccgtacaa
    35941 tgcacgtttg cgcggtgggg cgttttcagt cgccagcagc gccgcgccgc cccattcacc
    36001 acctaagccc agaccctgac caaatcgagc cagcgccagc agcagcgggg cgaaaatacc
    36061 aatcgtggca tagcctggca gcagaccaat caccacggtc gaaatcccca tcgttagcaa
    36121 cgaggcgacc agcgtcgctt tacgcccaac gcgatcgcca aaatgaccaa aaacggcaga
    36181 gccaatgggg cgcgcgacga aggcgatggc gaaggtggcg agcgactgta gcgttgctgc
    36241 cgtaggatcg ccctgcggga agaagatatg cggaaacaca ataacggccg cagtggcgta
    36301 aatgtaaaag tcgaagaact caatggctgt gccaatgaga gaggcgacaa ggactttatt
    36361 acgcgagttg atcggcgtgt attcttgctc gtggtcgagt gttgtggctg ttgcttgcat
    36421 aatcttttct tattttttgg ctaacgaata gccatattac gcacagcaaa agcgatattt
    36481 caatgtgtaa caaatcgcgg aaatggtcaa aaaccaggca aaaaggggat aatgtttagg
    36541 ccagtgattt ttcttctatg aaatgcttca cataatttta taaatagtgg ataaaactgg
    36601 tttcaggtta aataaaagtt accaactgga tttatatgct ggggttatga gttagaatga
    36661 aattgtttgc tcccaaatag atggctgaag aggctctggg gacgagtttc aagaggttat
    36721 gtgcgcatta tagccggatg cgatgctggc gcatcttatc cggcctacgg ggagccaggc
    36781 cgaataaaat cgtatgccgg ataaggcgtt tacgccgcat ccggcctatt ttaaggctgc
    36841 gttttccctg gcattcgcgg gtcgtcttta tattcggcgg tggcaatcca cgccgcgcaa
    36901 aacagcgtca aacgggcgaa gaagtagaaa aatgccatca gccccagcac ggaaccaaat
    36961 gctgcgccag agggggattt catcagcgat ggcagggtgt aggtcatcac gattttaatc
    37021 acttcaaaac caatagcagc cagaaatgtt ccgcgaatca gggctttttt gcgcggacgg
    37081 tggcgcggca accgccagaa gatccagaag aaaagcagat agttggcgaa gatggaaatc
    37141 gccaggccaa tcaatcgcca cgtcggtttc agccactcaa tgctgttcag gtgcagggcg
    37201 ctaataatca tttgctgcgc cgaaccggca accgaggtga tcgaaagcgt cacaatcagc
    37261 gcaatcaaca aaccaatcag tgaaataaaa tcacgcagat attttaccca gaacttctcc
    37321 tgatcttgcg gcgagcgttc ccagacatca cgcgactggg cacgaatcgc ttcacgcagg
    37381 ttacccatcc agttgatgcc ggaataaagt gccaccgcca ggccgacaag ccctacagtc
    37441 gtacgctgct gaacggcggt gttgatggtg tttttcaacg tggcggctag tgtcggatcg
    37501 ctgatgtttt gcagaatttt gtcgaagata tcctgtagca acatcggatg ggaggccagc
    37561 acaaagcccc ctgcggcaaa cgacaccatc aaaatcggga tcatcgacaa aaatgagaaa
    37621 taggtgatag ccgcaccaaa ctggttaccc agccgatcgt taaagcgttc tgtcgcgcga
    37681 atcaggtgcg caataaccgg ttggcgttgg actttttcgg cagtggtggt gacggtttcc
    37741 agcgcctggc taactttgcc gcctttctcg ctattatcca actgcttaat cggctcgtgc
    37801 tccagatcct gggtgggacg tttgatctcg ttttcctgcg tcatccgctc ttttgtcctt
    37861 ctgtcgtggt cattcttaaa aagtatagtc ggtcagtcca ggtgctcttt cattacgcca
    37921 gccagccact gcataaacag gtttacacgc cgggaaagct cccgacgctg cgggtaaacc
    37981 agcgaaaggg agagcggctc ggcacggtag ccaggtaata cttcaataag ccgcccggca
    38041 cgcagggctt cgcgcacggc aatgcgcggg atctgaataa tccccagacc ggcaagaccg
    38101 gcggcgagat agttttcgct actatttacc gtcaacatgc cgccagactt aaaccactgg
    38161 acgccattaa cgctggcaac ctcaaaacct aacggatgta cacccaggtg cggtgtataa
    38221 cgcactattg cgtgtgaagt cagatcatcg gggctttgcg gataaccaaa gcgcgtcaga
    38281 tagtgcggac tggcacagtt gaccatggtc agtttgccga ggggacgggc gataacgcca
    38341 tcttccggta acgcgccagt gcgtatcacg caatcaaaac catcatgaag aatatctacc
    38401 ggacggtcat ggctactcag ttccagctca attcccggat gcagatagag aaattccgac
    38461 aggcgcggca gtaacaggtt tttcgcgatt cctggcggga tgtcgatgcg taatttaccg
    38521 ctgatactgg tggcatcctg ttgaaacaga ccgtccagtt cgttgagatt actcaacaca
    38581 tcttttgccc gttgataata ggtcatgcct tctggcgtga gtttgacccg tcgcgtggtg
    38641 cgctggagaa gctgggtgcc aagttgatgt tccagtgcct gtatctggcg cgaaacactt
    38701 ccctttggca aagcaaagaa atccgctgcg cgggaaaaac tttccagctc cgcgactttg
    38761 atgaacaact gcattgcgtg aattttatcc atttctttga ccgattgttg ttcacagcga
    38821 aacagtaacg cgcatatcgc attgtttatt gttttttcta acatctaatg ccgggtttca
    38881 caatgttgtc atgacgaatg tggcgatttc tcagcaggaa aagggcggaa tagctttatg
    38941 agaaaggtga atccccttaa acagagcgta tttttcagtg attcccttta aagtgaatag
    39001 aggacgtatt ggctatttgt gcttattttt gtctcattgc catttgttat tttggcttgt
    39061 agtcgcggaa tttcattttt aattgcatgc gtactaacca ccaatataag gaaatcctca
    39121 aaattgtttt aaatagtgcc ctcgacatgt aatttcaggc gtttagctgt aactatttat
    39181 atcggtaact attttctacg cgtcatctct gtagaatggc caccgccaaa tggcgaattc
    39241 ttattttttc tcgcgggtaa tacccttcca ctacttaagt ctttttaaca tattcaggtg
    39301 gagattcagt tatgcaaata gtcatgtttg acaggcagtc aatatttatt catggaatga
    39361 aaatcagttt acagcagcgt attccagggg tgagtattca gggggccagt caggcagacg
    39421 agttatggca aaagctggaa agttaccctg aagccttagt tatgctcgat ggcgatcagg
    39481 atggtgagtt ttgctactgg ttgctgcaaa aaaccgtggt gcagtttcct gaggttaagg
    39541 tgttaatcac ggcgacggat tgcaataaac ggtggttaca ggaagttatc cattttaatg
    39601 tgctggccat tgtgcctcgt gattcaaccg tcgagacatt tgcgttggcg gtaaatagtg
    39661 cggcgatggg gatgatgttt ctgcctggag actggcggac gacgccggaa aaggacatta
    39721 aagatctcaa atcgttaagc gcccgccagc gggagatttt aaccatgtta gcggcgggcg
    39781 agtcaaataa ggagatcggc agagcgctga atatcagtac cggaacggta aaagcgcatc
    39841 tggaatccct gtatcgccgt ctggaagtga aaaatcgcac ccaggcggca atgatgttaa
    39901 atatctcctc ctgaagagga taattttaca gccagcagga agttagcggc tggctgtaaa
    39961 aatattatgg ttcgccgtac aaaccaatta aacggcgtac cacaccgtta gtccagccaa
    40021 acccatcctg caacggatac tcgccaccgc cgccttcgcg tggaacacca tcggcaatat
    40081 ggtatttttc gatcagtttg tgctgttcca gatagaactg attcaccgtc ttcagccagc
    40141 ttcgcgcgat ttcatcaccc agaaggtcat cgccgtacat tttaaatccc tgaatcgcca
    40201 tccattgtaa cggtgcccag ccgttgggtt tatcccactg ttcaccggtt tcgtactcgc
    40261 ttgccagaat cccgccaggt gtcagtaacc gactgcgcac ggcatttgcc agacgatcgg
    40321 cctgttcatg gttcgccata ccgacataga gtggcacaat ggcggcagcg gaaaacagcg
    40381 ccagttgttc gcgtcgccag tcgtaatcgc ggtagatgcc gttttcatca tcccagaggt
    40441 aacgctttac cgcatcgcga cgggcactgg ccttctggcg gaacagtgct tctgtctctt
    40501 tctcgccttt cagcgccgag atgttggcga tggcgctctc cagtttaaac aggaaggcat
    40561 tcagatcgat ggggatgaac tgggtggtac gaatactcgc cagacgacca gtatcacgca
    40621 gccaacggga agagtaatcc caaccggagg ccgcccccgc tcgtaaatcg cggtacacct
    40681 cgttgggcgg gcgaccagaa tgtttcgcgg tttcaacgtc ctcaagccag gattcgtcac
    40741 gcggcgtgtc gcgatcgtcc cagtaacggt tgagcagcga tccgtccggc atccgcacaa
    40801 catggcgata ggcctgatta gggatcaacg attctgcacc gtccatccag aaggcatatt
    40861 ccattttcag gtggtcgaga tagcggcgcg caccgcgtac accatcttct tcaaacaact
    40921 ccaccatcag cgcaaaaacc ggtggttgcg agcggctcaa ataataggtg cggttgccgt
    40981 tggggatgtg accgtagttt tcgatcatcc aggcgaagtt atcggccatg catttcagca
    41041 aatcttcccg accactttcc gccagcccca gcatggtgaa ataggaatcc caatagtagg
    41101 tttcgctaaa acggccgccc gggacaatat atgactgcgg tagcgccagc agagaagacc
    41161 acggaatgtg atcctgtggt tcgcgggtta gcaccggcca cagctggtcg atatgctctt
    41221 tcagggaatt ttgcgggtcc gatacatact cgctggagta gacctccggc agccagaagt
    41281 gattttcaac aaacttgcgc aagtcaaaat cacgatgacg gcgcacttta cggtagcgga
    41341 ttaaaatatc cagcgggtcc attttgggtg cgcagtcggg aaaggtttta ctgtcgggga
    41401 aaattttcgc cgactgaaca tgctcgaaca gttcgagata gcgatcggca ggcgtcagcg
    41461 catcagaggc gggcagccct tcaatcatct cgggttccgg ttctgcctcg atcatctcat
    41521 ccagttttaa ttcatacggg tccagttcat agcagagatc gacttcgatc atcagttcgt
    41581 ctggattagg gttttgaatt ttctgattga gcataaggat ccaacctccg aaattcgtcg
    41641 ctaattatcg gcttttcttt aagggtagtc attcgctccg cctggtgggc gacaaagcgt
    41701 gcggtggatc acgtttatta acttgtcaaa aaatataacg cactaatatc aatggaattt
    41761 ataaaaatac ggatttggtg ttgtttttca ttttcagaac attcaatcct gctctcgccg
    41821 caatcatgat atgccattcc tgatctgggt aataggcaca ggctatctta ttgatagttt
    41881 atattcatgt aattgattga ttcctatcaa aaagcgtatc tccctgtttt ttatgatggc
    41941 tttgtctcgc agagacgttt gcagcattct ggaaaatttt ctgggtcaca ataactcacc
    42001 accgtgaggg aagaataatg aaaatggtct cacgtattac cgcgatcggc ctggctggcg
    42061 tcgcgatttg ctatttaggg ttatctggtt atgtgtggta ccacgataat aaacgcagta
    42121 aacaggccga tgttcaggca tctgctgtca gtgaaaataa taaggtttta ggctttctcc
    42181 gcgaaaaagg atgcgactat tgccacacgc cttcggcaga attacccgcc tattattata
    42241 ttcctggcgc gaaacagttg atggattacg acattaagct tggatataaa tcttttaacc
    42301 tcgaggccgt gcgtgcggca ctgctggctg ataaacccgt ttcgcaaagc gatctgaata
    42361 agattgaatg ggtgatgcag tatgaaacta tgccaccaac gcgttatacc gcgctacact
    42421 gggcgggtaa ggtgagtgat gaagagcggg cggaaatact ggcctggatt gcaaaacagc
    42481 gcgcggaata ttacgccagc aatgatactg ctccggagca tcgcaatgaa ccggtgcagc
    42541 ccatcccgca aaaactgcct accgatgcgc aaaaagtggc gttgggcttt gcgctgtatc
    42601 acgatccccg tttatcggct gatagcacca tttcatgcgc tcattgccat gcgttgaatg
    42661 cggggggcgt cgatggcaga aaaacatcga ttggtgttgg tggcgcagtt gggccgatta
    42721 acgcgccgac ggtatttaac tcagtattta acgttgagca gttctgggat ggtcgtgcgg
    42781 caacattgca ggatcaggca ggtggaccgc cgttgaaccc gattgaaatg gcgtcgaaat
    42841 cctgggacga aattattgct aagctggaaa aagatccgca gcttaaagcg cagttcctcg
    42901 aagtttatcc gcaaggtttc agtggcgaaa atattactga tgccattgct gaatttgaga
    42961 aaacattaat tacgccggat tccccatttg ataaatggtt gcgtggagat gaaaatgcgc
    43021 tgacggcgca acagaaaaaa ggctatcaat tatttaaaga taataaatgt gcaacttgtc
    43081 atggtggtat tattctcggc ggacgttcct ttgaaccgtt ggggctgaaa aaagacttta
    43141 actttgggga aattacggcg gcggatattg gtcgtatgaa tgtgactaaa gaagagcgtg
    43201 ataaattgcg ccagaaagta cccggtttac gtaacgttgc tttaacggca ccgtacttcc
    43261 atcgcggtga cgtgccgacg ctggacgggg cggtgaaact gatgctgcgc tatcaggtag
    43321 gcaaagagct gccgcaggag gatgtggatg atatcgtagc tttcctgcac agtctgaacg
    43381 gggtgtacac gccgtatatg caggataaac aataactaat ttgatcgccc gaacaggaat
    43441 gtttgggcga tttttattac gataataaag tctgttttta atattatcat gttaaatgtt
    43501 tatattataa aaagtcgttt ttctgcttag gattttgtta tttaaattaa gcctgtaatg
    43561 ccttgcttcc attgcggata aatcctactt ttttattgcc ttcaaataaa tttaaggagt
    43621 tcgaaatgga ccagaagctg ttaacggatt tccgctcaga actactcgat tcacgttttg
    43681 gcgcaaaggc catttctact atcgcggagt caaaacgatt tccgctgcac gaaatgcgcg
    43741 atgatgtcgc atttcagatt atcaatgatg aattatatct tgatggcaac gctcgtcaga
    43801 acctggccac tttctgccag acctgggacg acgaaaacgt ccataaattg atggatttgt
    43861 cgatcaa
//
LOCUS       DAJVUY010000009        43232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.009, whole genome shotgun sequence.
ACCESSION   DAJVUY010000009 DAJVUY010000000
VERSION     DAJVUY010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 43232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43232
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.009"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..255
                     /locus_tag="OQQ72_000502"
     CDS             <1..255
                     /locus_tag="OQQ72_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
                     /protein_id="HCS2010347.1"
                     /translation="IRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQR
                     YFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK"
     gene            complement(305..1561)
                     /gene="nupG"
                     /locus_tag="OQQ72_000503"
     CDS             complement(305..1561)
                     /gene="nupG"
                     /locus_tag="OQQ72_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupG"
                     /protein_id="HCS2010348.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMSTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="OQQ72_000504"
     CDS             complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="OQQ72_000504"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HCS2010349.1"
                     /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(2907..3182)
                     /locus_tag="OQQ72_000505"
     CDS             complement(2907..3182)
                     /locus_tag="OQQ72_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HCS2010350.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="OQQ72_000506"
     CDS             complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="OQQ72_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCS2010351.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4423..5142
                     /gene="trmB"
                     /locus_tag="OQQ72_000507"
     CDS             4423..5142
                     /gene="trmB"
                     /locus_tag="OQQ72_000507"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCS2010352.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLNNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5142..5468
                     /locus_tag="OQQ72_000508"
     CDS             5142..5468
                     /locus_tag="OQQ72_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HCS2010353.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5652..6371
                     /locus_tag="OQQ72_000509"
     CDS             5652..6371
                     /locus_tag="OQQ72_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HCS2010354.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6547..7593
                     /gene="ansB"
                     /locus_tag="OQQ72_000510"
     CDS             6547..7593
                     /gene="ansB"
                     /locus_tag="OQQ72_000510"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HCS2010355.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7710..8717
                     /locus_tag="OQQ72_000511"
     CDS             7710..8717
                     /locus_tag="OQQ72_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HCS2010356.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQSAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(8872..10008)
                     /gene="hemW"
                     /locus_tag="OQQ72_000512"
     CDS             complement(8872..10008)
                     /gene="hemW"
                     /locus_tag="OQQ72_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HCS2010357.1"
                     /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(10001..10594)
                     /locus_tag="OQQ72_000513"
     CDS             complement(10001..10594)
                     /locus_tag="OQQ72_000513"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HCS2010358.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10602..10892)
                     /locus_tag="OQQ72_000514"
     CDS             complement(10602..10892)
                     /locus_tag="OQQ72_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HCS2010359.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(10889..11455)
                     /gene="yggT"
                     /locus_tag="OQQ72_000515"
     CDS             complement(10889..11455)
                     /gene="yggT"
                     /locus_tag="OQQ72_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HCS2010360.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGMWMAL"
     gene            complement(11473..12177)
                     /gene="yggS"
                     /locus_tag="OQQ72_000516"
     CDS             complement(11473..12177)
                     /gene="yggS"
                     /locus_tag="OQQ72_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HCS2010361.1"
                     /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12195..13175
                     /locus_tag="OQQ72_000517"
     CDS             12195..13175
                     /locus_tag="OQQ72_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HCS2010362.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDALDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13351..13767)
                     /gene="ruvX"
                     /locus_tag="OQQ72_000518"
     CDS             complement(13351..13767)
                     /gene="ruvX"
                     /locus_tag="OQQ72_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HCS2010363.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13767..14330)
                     /locus_tag="OQQ72_000519"
     CDS             complement(13767..14330)
                     /locus_tag="OQQ72_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HCS2010364.1"
                     /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLE
                     NLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDN
                     TVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTASADLNILFKT
                     PIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14439..15389)
                     /gene="gshB"
                     /locus_tag="OQQ72_000520"
     CDS             complement(14439..15389)
                     /gene="gshB"
                     /locus_tag="OQQ72_000520"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HCS2010365.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15402..16133)
                     /gene="rsmE"
                     /locus_tag="OQQ72_000521"
     CDS             complement(15402..16133)
                     /gene="rsmE"
                     /locus_tag="OQQ72_000521"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014226833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCS2010366.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16213..16920)
                     /gene="endA"
                     /locus_tag="OQQ72_000522"
     CDS             complement(16213..16920)
                     /gene="endA"
                     /locus_tag="OQQ72_000522"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HCS2010367.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(17015..17512)
                     /locus_tag="OQQ72_000523"
     CDS             complement(17015..17512)
                     /locus_tag="OQQ72_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HCS2010368.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17589..18983)
                     /gene="galP"
                     /locus_tag="OQQ72_000524"
     CDS             complement(17589..18983)
                     /gene="galP"
                     /locus_tag="OQQ72_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/proton symporter"
                     /protein_id="HCS2010369.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19419..20573)
                     /gene="metK"
                     /locus_tag="OQQ72_000525"
     CDS             complement(19419..20573)
                     /gene="metK"
                     /locus_tag="OQQ72_000525"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCS2010370.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(20877..21092)
                     /locus_tag="OQQ72_000526"
     CDS             complement(20877..21092)
                     /locus_tag="OQQ72_000526"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010371.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21228..21359
                     /gene="yqgB"
                     /locus_tag="OQQ72_000527"
     CDS             21228..21359
                     /gene="yqgB"
                     /locus_tag="OQQ72_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HCS2010372.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21368..23344
                     /gene="speA"
                     /locus_tag="OQQ72_000528"
     CDS             21368..23344
                     /gene="speA"
                     /locus_tag="OQQ72_000528"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HCS2010373.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23481..24401
                     /gene="speB"
                     /locus_tag="OQQ72_000529"
     CDS             23481..24401
                     /gene="speB"
                     /locus_tag="OQQ72_000529"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HCS2010374.1"
                     /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24607..25365)
                     /gene="loiP"
                     /locus_tag="OQQ72_000530"
                     /gene_synonym="yggG"
     CDS             complement(24607..25365)
                     /gene="loiP"
                     /locus_tag="OQQ72_000530"
                     /gene_synonym="yggG"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease LoiP"
                     /protein_id="HCS2010375.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25643..27634
                     /gene="tkt"
                     /locus_tag="OQQ72_000531"
     CDS             25643..27634
                     /gene="tkt"
                     /locus_tag="OQQ72_000531"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS2010376.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL"
     gene            27948..28391
                     /gene="cmtB"
                     /locus_tag="OQQ72_000532"
     CDS             27948..28391
                     /gene="cmtB"
                     /locus_tag="OQQ72_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HCS2010377.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISHR"
     gene            28419..29807
                     /gene="cmtA"
                     /locus_tag="OQQ72_000533"
     CDS             28419..29807
                     /gene="cmtA"
                     /locus_tag="OQQ72_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HCS2010378.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSLGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSTNAVKAMKQEGAFSLSRVKRIAFVCDTGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29822..31099
                     /locus_tag="OQQ72_000534"
     CDS             29822..31099
                     /locus_tag="OQQ72_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS2010379.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
     gene            31096..32061
                     /gene="yggF"
                     /locus_tag="OQQ72_000535"
     CDS             31096..32061
                     /gene="yggF"
                     /locus_tag="OQQ72_000535"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS2010380.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            32083..32592
                     /gene="fumE"
                     /locus_tag="OQQ72_000536"
     CDS             32083..32592
                     /gene="fumE"
                     /locus_tag="OQQ72_000536"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HCS2010381.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            32589..33302
                     /locus_tag="OQQ72_000537"
     CDS             32589..33302
                     /locus_tag="OQQ72_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HCS2010382.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAETFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(33274..33951)
                     /locus_tag="OQQ72_000538"
     CDS             complement(33274..33951)
                     /locus_tag="OQQ72_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS2010383.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAVACLEALSPPLLLL
                     DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN
                     PPDDIHP"
     gene            complement(33945..34622)
                     /locus_tag="OQQ72_000539"
     CDS             complement(33945..34622)
                     /locus_tag="OQQ72_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS2010384.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            complement(34610..35317)
                     /locus_tag="OQQ72_000540"
     CDS             complement(34610..35317)
                     /locus_tag="OQQ72_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HCS2010385.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILVIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            complement(35318..35896)
                     /locus_tag="OQQ72_000541"
     CDS             complement(35318..35896)
                     /locus_tag="OQQ72_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HCS2010386.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            complement(35919..36350)
                     /locus_tag="OQQ72_000542"
     CDS             complement(35919..36350)
                     /locus_tag="OQQ72_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS2010387.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            36722..37741
                     /gene="epd"
                     /locus_tag="OQQ72_000543"
     CDS             36722..37741
                     /gene="epd"
                     /locus_tag="OQQ72_000543"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HCS2010388.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            37791..38954
                     /gene="pgk"
                     /locus_tag="OQQ72_000544"
     CDS             37791..38954
                     /gene="pgk"
                     /locus_tag="OQQ72_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HCS2010389.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            39169..40248
                     /gene="fbaA"
                     /locus_tag="OQQ72_000545"
     CDS             39169..40248
                     /gene="fbaA"
                     /locus_tag="OQQ72_000545"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCS2010390.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            40606..41466
                     /gene="mscS"
                     /locus_tag="OQQ72_000546"
     CDS             40606..41466
                     /gene="mscS"
                     /locus_tag="OQQ72_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HCS2010391.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            41605..42240
                     /gene="argO"
                     /locus_tag="OQQ72_000547"
     CDS             41605..42240
                     /gene="argO"
                     /locus_tag="OQQ72_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HCS2010392.1"
                     /translation="MFSYYFQGLDLGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            42333..43073
                     /locus_tag="OQQ72_000548"
     CDS             42333..43073
                     /locus_tag="OQQ72_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HCS2010393.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
BASE COUNT        10571 a        10785 c        11521 g        10355 t
ORIGIN      
        1 attcgcggtg aagtggagtt ggtgcggatt cgtgatgccg aagggcgaat tgcggcagaa
       61 ggggcgttgc cttatccacc tggcgtgctt tgcgtggtac ccggggaagt ctggggtggg
      121 gcggttcaac gttatttcct tgcactggaa gaaggggtaa atttgttgcc gggattttcg
      181 ccggagctgc aaggtgttta tagcgaaacc gatgcggatg gcatgaaacg gttgtacggt
      241 tatgtgttga agtaagaata aaaaaaacgg gtcaccttct ggcgacccgt ttttctttgc
      301 gtaattagtg gctaaccgtc tgtgtgcctg tcgggacacg aacgtgttta tatttgaaca
      361 tcgccatgaa cgcgaaggcc agaaccacgg agtaaccagc gaaaatcaac catacggtct
      421 gccagtcggt aatgccgttt tgggtgtaca tctcaacaac tttaccgctc acgatgccgc
      481 cgaggataca gccgaagccg ttagtcatca tcaggaacat cccttgtgca ctggcgcgaa
      541 ttgccgggct aacttctttt tcgacaaaca ccgaaccaga gatgttgaag aagtcgaatg
      601 cgcaaccgta aacgatcatc gacagtacca gcagtacagt accgaacgga gtcgggtcgc
      661 cgtaagcaaa cagcgcaaaa cgcaggatcc acgccacaat actgatcatc attacgttct
      721 taataccgta gcggcttaag aagaacggga tggtcagaat gaacagggtt tcagagatct
      781 gcgaaatcga catgatgatt gacgcatgct gcacaataaa gctgctggca aacatcggat
      841 ctttgtcgaa gctgtgcagg aaggtattac cgaacatgtt ggtaatctgc agttccgcgc
      901 ccagcagcat tgagaagata aagaagattg ccatacgctt gtttttaaac agcgcgaatg
      961 catcgaggcc cagcagggtt gtccagctct gattcgcttg ctgtttagca accggaatat
     1021 gcggcagagt cagggtaaac agaaccagaa tggcggaaag tgctgcgcca atatacagct
     1081 gcatgtggct taattcgaag ccagacaggc tcaccaccca cattgccatg ataaagccga
     1141 tggtgcccca gatacggatt ggcgggaagt cagtaacgat atccatcccg gcattttgca
     1201 ggcgatagta agagatggtg ttgattaacc caagcgttga catataagca aacgagttaa
     1261 tcaatatcac aaggaacatc gcctccggtg tcgtgacctg tgccgccatg aacagcgtga
     1321 tagcgccaat ggtgtggcaa atggcatata cccatttcgc acttaaccat ttgtcggcca
     1381 caatccccag cagcgcaggc ataaagaccg ctgcgatacc cagtgagcta taaactgcgc
     1441 caatagaagc accgtcaaac ttcagggtaa caaacatata ggagccgagg gtcgtcagcc
     1501 aacttcccca cagacagaac tgcagaaaag agaggatttt cagctgcagc ttaagattca
     1561 tgttaatttc ctcacatcgt gatgcggatg agtgtttgaa aaagcacatt tgaccgtgcg
     1621 agatgatggg attctatcaa cttcgcggac tggttttttg ttacctgtgg caaataattg
     1681 caaacattcc caatttgcaa aacgaaattg tgatgtggat aacatttttg cccctgagca
     1741 tcgtcagggg cggttaatgg aattatcggc ggcggtagga tttttgcgcg gtattcactt
     1801 tataaagata acggcgagat tccgcagagg gatggcgggt cgtcagcgtc tgataaacat
     1861 cgcccggcgt catggtgtta ataatattgg cagcctgaat cttatcattc gaaaagactc
     1921 gcagcacgct gcctgcgccg ccgttatagg cggtgatgac ggcataacgc cgcgatgttg
     1981 ggttatcaat tccgccgaga taaacattgt tcagcatcgc cagatacgcg gtgccggtat
     2041 caatattgct ggcaggatca aacaagaaac tgcggctcgg cgtgccggat ttcccctgcg
     2101 agcggaacac atctttcccg gcagtatgtt gtaccacctg cattaatccc agcgcatcgg
     2161 aacggctgac cgcatacggg ttaaaggaag attcggtctg cataattgcc agaatcagcg
     2221 actcatcaac gccatatttc cgtgacgcct ggcggaccat gccgagatat ttgtgcgcac
     2281 gtttatcaag gtggttcggt accatgttaa tggtgacgct gtagatgata cgcagcccgt
     2341 tactgcggct ttgcagacgg tttttcagca gataatccgc gaagttgctt gcgcgacctt
     2401 cccagcgaat cggctgcccg gtgttgtcca ccacctgacc gtaaaggaaa ggttctttcg
     2461 aaatcgtaat atcatcaacg tcggaataga gatcgaccga actcggatcg tcacccatca
     2521 gcaacgtttt gataattgcc cggcgcaaat gcgcggcagg ttctgtcccg gcgatagttt
     2581 cgatagtaat cgtaccgtca tcgaagttga tgtggctgcg ggtctgatat tgatcggtgt
     2641 atttcacgta gtccttagga ccggcgatca ccacctcttt gaatccccag atgttctcaa
     2701 tattgtgggc aaattgcccc atcagaatat caaaaccgtt ggtatctttg acccaggctt
     2761 cgttataggt atcgcctttt ttggtcgtcg aacaggagat gagcaacggc gcaatcaaag
     2821 ccagcgcgag atattttttc atcattccgg gtgcgtgttg tgtttgtttt tatgcaagtt
     2881 gccggaggcg tgctccggca ctgtttttat tttttatctt ccggcgtata gccctcgata
     2941 tgcacctctt taccctcgaa caggaagttg accatctcct gctcaagcag cttgcggtgc
     3001 tcggcattca tcatgttgag tttcttttca ttaatcagca tggtttgctt gtgctgccac
     3061 tgcgcccagg cttctttgga gatctcgtta tagatgcgtt ttcccagctc gccggggtac
     3121 agctgaaaat cctgaccttc tgcttcacgt tgcaggaaag tacaaaaaat cgttctgctc
     3181 ataaatcatc ctctttatcg actcacgcgc taaaccggcg cgccagtgcg taactgctgt
     3241 aacaaacgct ccacgggagc cgccaggcca actgacggcg gttgcgctaa gttataccag
     3301 agcgcattgc cttcatccat gcagccggtg aatgacgaca cgggaagcca cataggcaca
     3361 atatctaagt ggaaatggct gaaggtatgc cgaaacgcgg tcagttgcgt caggttatcg
     3421 gcagcaatct gccgttgcgc cagccactgc cgcaaacttt cttcgtcggc aaactgcggg
     3481 aaacagtata aaccgcccca caatccgctc ggcggacgct gcgccagcaa tacttcatct
     3541 tcgtgctgta acagcaaaaa gtagccggtg cgctccggca gcgtctgttt cggttttttg
     3601 cccggataaa gcgaccagct attattggcg gcggcaatac atccgttttg tagcggacag
     3661 agcgaacatt tcggcttcga gcgcgtacaa atcatcgcgc ccaaatccat catcgcctga
     3721 ttaaaccgtt ccacgccgac cgcgggcgtc acctgctcgc tcaaactcca taatttattc
     3781 tcgacctctt ttttcccagg ccagccgctt acagcatagc agcgcgccag cacgcgtttg
     3841 acgttaccgt cgagaatcgg aaagtgctta cccagagaaa gcgagagaat cgcgcctgcg
     3901 gtggaacgcc cgacgcccgg taacgccgcg acttcttcaa aggtttccgg gaatttaccg
     3961 ccgtgtaagg tcgccacttg ttgtgccgct ttatgcagat tgcgcgcgcg ggcgtaatag
     4021 ccaagcccgg tccacaagtg gagaacttcg tcgagcggcg cattggcgag atcggtcacc
     4081 gtcgggaagc gcgccataaa gcgttcaaaa taggggataa cggtcgcaac ctgagtttgt
     4141 tgcaacatca cttctgagag ccatactttg tagggcgtct tgtcaatttg ccagggcagc
     4201 gtttttcgcc cgtatttatc gtaccagtcc agaacctggg ctgaaaattg cgacgcttgc
     4261 atggtcaccg aattcactgt tgttgggggc aagattgcag cacagcgacg gcagggtgta
     4321 aaccggaact ttccgcagcc acggccttat catgcttgca tccggcaact aactttggat
     4381 aatgcccgtt ttcagaacac tttcacaagc gactaaatct ttatgaaaaa cgacgtcatt
     4441 tcaccggaat ttgatgaaaa cggccgccca ctgcgccgta tccgtagttt tgtgcgccgc
     4501 caggggcgac tgaccaaagg ccaggaacat gcgctggaaa actactggcc ggtgatgggc
     4561 gttgagttca gcgaagatat gctggatttc cccgcgcttt ttggccgtga agcgccggtg
     4621 acgcttgaga ttggttttgg catgggggcg tcgctggtgg caatggctaa agatcgccct
     4681 gagcaggact tcctcggcat tgaagtgcat tcaccgggcg ttggtgcgtg cctggcttct
     4741 gcgcatgaag aaggtttaaa caacctgcga gtgatgtgtc acgatgcggt tgaagtgctg
     4801 cataaaatga ttcctgacaa ttcattgcgc atggtgcagc tctttttccc tgacccgtgg
     4861 cacaaagcgc gccataataa acgccgtatc gtacaggtgc cgtttgccga actggtaaaa
     4921 agcaaactgc agctgggggg cgtattccat atggcgaccg actgggaacc ttatgcggaa
     4981 catatgcttg aagtgatgtc ttctattgac ggttataaaa acctgtcaga gagcaatgat
     5041 tacgtaccgc gtccggcatc acgtccggtg acgaaatttg aacaacgtgg tcatcgtctt
     5101 ggtcacggag tatgggactt aatgttcgag agggtgaaat aatggcaaag aaccgtagcc
     5161 gtcgtctgcg taaaaaaatg cacatcgacg aattccagga attaggattt tcggtggcat
     5221 ggcgattccc ggaaggtaca tcggaagaac agattgataa aaccgttgat gattttatta
     5281 acgaggttat cgaaccgaac aaactggcct ttgacggcag cggttatctg gcctgggaag
     5341 gtctgatctg catgcaggaa atcggcaaat gcaccgaaga acatcaggcg attgtgcgta
     5401 agtggctgga agagcgcaaa ctggatgagg tacgcaccag cgaacttttc gacgtttggt
     5461 gggactaaga aagcatacgg gcgatgacaa atgcaaaact gcctgatgcg ctacgcttat
     5521 caggcctgga aagatgcacg atcgagtagg cgggataagg tgtttacgcc gcatccggca
     5581 tggaaaacgc gtactttgtt atcaatctgg ggccagcaaa tgctggcctg attttttctt
     5641 gagggaagac tatgatgcgc aaaatgctgc tggcggcagc actttcagtg acggcaatga
     5701 ccgctcacgc cgactaccag tgcagcgtca cgccgcgtga cgatgtgatt gtcagcccgc
     5761 aaaccgtgca ggtgaagggc gaaaacggca atctggtgat cacgccagac ggcaacgtga
     5821 tgtataacgg taagcaatat tccctgaatg ccgcccagcg cgagcaggcg aaggattatc
     5881 aggctgaact acgcagcacg ctgccgtgga ttgatgaagg cgcgaaaagc cgcgtcgaaa
     5941 aagcccgtat tgcgctggat aaaattatcg ttcaggagat gggcgaaagc agcaaaatgc
     6001 gcagccgtct gaccaaactt gatgcgcaac tgaaagagca gatgaaccgc attatcgaaa
     6061 cgcgcagcga tggcctgacg tttcactata aagccattga tcaggttcgc gccgaaggcc
     6121 agcaattagt gaatcaggca atgggtggaa ttttacagga cagcattaat gaaatgggcg
     6181 cgaaagcggt gctgaaaagc ggcggtaacc cattacagaa tgtgctggga agcctggggg
     6241 ggctgcaatc ctcaatccaa accgagtgga aaaagcagga aaaagatttc cagcagtttg
     6301 gcaaagatgt ttgtagccgc gttgtgactc tggaagatag ccgcaaagcc ctggtcggga
     6361 atttaaaata atcctctatt ttaagacggc ataatacttt tttatgccgt ttaattcttc
     6421 gttttgttac ctgcctctaa ctttgtagag ctccaaaata tattcacgtt gtaaattgtt
     6481 taacctcaaa tttcccatac agagctaagg gataatgcgt agcgttcacg taactggagg
     6541 aatgaaatgg agtttttcaa aaagacggca cttgccgcac tggttatggg ttttagtggt
     6601 gcagcattgg cattacccaa tatcaccatt ttagcaaccg gcgggaccat tgccggtggt
     6661 ggtgactccg caaccaaatc taactacaca gcgggtaaag ttggcgtaga aaatctggtt
     6721 aatgcggtgc cgcaactaaa agacattgcg aacgttaaag gcgagcaggt agtgaatatc
     6781 ggctcccagg acatgaacga taatgtctgg ctgacactgg cgaaaaaaat taacaccgac
     6841 tgcgataaaa ccgacggctt cgtcattacc cacggtaccg acacgatgga agaaaccgct
     6901 tacttcctcg acctgacggt gaaatgcgac aaaccggtgg tgatggtcgg cgcaatgcgc
     6961 ccgtccacgt ccatgagcgc agacggtcca ttcaacctgt ataacgcggt agtgaccgca
     7021 gctgataaag catccgctaa tcgtggcgtg ctggtggtga tgaacgacac cgtactggac
     7081 ggtcgcgatg taaccaaaac caacaccacc gacgtagcga ccttcaagtc tgttaactac
     7141 ggtcctctgg gatacattca caacggtaag attgactacc aacgtacccc ggcacgtaag
     7201 cacaccagcg atacgccatt cgatgtctct aagctgaatg agctgccgaa agtcggcatc
     7261 gtttataact acgctaacgc atccgatctt ccggctaaag cactggtaga tgcgggctat
     7321 gatggcatcg ttagcgctgg tgtgggtaat ggtaacctgt ataaatccgt gttcgacacc
     7381 ctggcaaccg ccgcgaaaaa cggcactgca gtagtgcgtt cttcccgcgt accgacgggt
     7441 gctaccactc aggatgctga agtggatgat gcgaaatacg gcttcgtcgc ctctggcacg
     7501 ctgaacccgc aaaaagcgcg cgtcctgctg cagctggctc tgacgcaaac caaagatccg
     7561 cagcagatcc agcagatctt caatcagtac taatcacctc gctccggtat cgtgccgggg
     7621 ctttttcact tcagacttac gtccattgcc aattttcatt accctaatga taatcaccgg
     7681 aataaattat ttcgcgtgag gtttttcggg tgaaaaagca atggattgtt ggcacggcac
     7741 tgcttatgtt gatgactggt aatgcctggg cagatggcga accgccaact gaaaatatct
     7801 taaaagatca attcaaaaag cagtatcacg gcattctcaa gcttgatgct atcaccttaa
     7861 aaaatcttga tgctaagggt aatcaggcca cctggtcagc ggaaggcgat gtctcttcca
     7921 gtgacgatct ctatacctgg gtcggtcagt tggcagatta cgaactgctc gaacagacct
     7981 ggacgaaaga taaaccggta aaattctcgg cgatgttaac cagtaaagga acgcccgcgt
     8041 ctggctggtc ggtgaacttt tactcttttc agtcggcagc cagcgatcgt gggcgggtgg
     8101 tcgacgatat caaaacgaat aataaatatc tgatcgtgaa tagcgaagat ttcaattatc
     8161 gctttagtca gcttgaatct gcgttgaata cccagaagaa ctcgattcct gcgctggaaa
     8221 aggaagtgaa agcgcttgat aagcaaatgg tggcggcgca gaaagcagcg gatgcatatt
     8281 ggggaaaaga tgcaaacggt aagcaaatga cccgcgaaga agcctttaaa aaaattcacc
     8341 aacagcgtga tgagtttaat aaacagaacg atagcgaggc gttcgcggtt aaatatgaca
     8401 aagaggttta tcaaccggcg attgcggcat gtcataaaca gagtgaagag tgttatgaag
     8461 tgccgattca gcagaaacga gatttcgata tcaacgaaca acggcgacag acttttctgc
     8521 aatcacaaaa actcagccgt aaattgcagg atgactgggt aacgctcgaa aaagggcaat
     8581 atccgttaac gatgaaagtt tcagaaataa acagtaaaaa agtcgcgatt ttgatgaaaa
     8641 ttgacgatat caaccaagct aatgaacgct ggaaaaaaga taccgaacaa ctgcggcgca
     8701 atggggtgat taagtaagtt tgatatagtg cacgatttgt agcaggatgc ggcgttgacc
     8761 ccgcatccgg caatcaacgt ctgatgcgac gcttgcgcgt cttatcagac ctacaaccgt
     8821 tgccacatgt aggctggata aggcgttcac gccgcatccg gcaatacaag tttactcagc
     8881 cagaaaaagc tccagcagcg aatttaaaaa cagcttccca tgttccgtta tctgccagta
     8941 atccgcacat tctgtgagat aaccctgggc aatcgcctcg tctaactgtg ggcgaatcac
     9001 atcttcgcaa agcccggtat acgcactaaa ctctgcgcgt ggcgcggcct ccagcaagcg
     9061 aaagcggttc ataaagaact caaacggctt atctgcggct tcgacatcac gctggctttc
     9121 cagatacctt ccttgcataa aaccacgagg atgacgcgtt ttagtggtac gcagaatgcg
     9181 cccatccggg aaggtgactt tgccgtgcgc gccgcagcca ataccgatgt agtcaccaaa
     9241 tcgccagtag ttgagattgt gctggcactg ataaccgggt ttggcgtaag cggaagtttc
     9301 atattgctga taacccgctg cggttaataa ctgatgcccc tgttcgaaaa tatcccacag
     9361 cgcgtcatcg tccggcagca ccggtggtcg cgaaccaaac agcgtattgg gttcgatggt
     9421 cagttgatac caggaaagat gcggcggatt cagttcaatg gcctggcgta gatcgccaag
     9481 cgcctcttcc agtgattgat ccggtagtcc atgcatcaaa tcaaggttaa agctacgtaa
     9541 ccctaaaccg ctcgccagct ttgccgctcg tttcgcttct tgcgggccat gaatgcgccc
     9601 aagtcgtttc agcttttctt cgctaaaact ctgcacacca atagagatgc ggttcacacc
     9661 agcacgctga taatcgacaa agcgatcggc ttctaccgta ccagggttcg cttccatagt
     9721 aatttctgca tccgctgcca gcggcaaacg cgcacgcacg ccgtccagca gcgtttgcat
     9781 cgccgggccg gaaagcaggc tcggcgtacc accgccaata aagattgtct ttacttcacg
     9841 gccctgagcg taagccacat cattgtccag atcgcaaagc agatgctgaa cataatcgtc
     9901 gtgcggcact tctcctttca acgcgtgaga gttgaaatcg cagtacgggc atttctgcac
     9961 gcaccacggg atgtgaatgt agagactcag cggcggtaat ttaaccatta cgtaaagcgt
    10021 ccagcagcag tttcaacgcc tgaccacggt gggaaatggc gctcttttct tcgcgggtca
    10081 gttcggcggc ggttttccct tcggaaggta cgaagaagat tggatcataa ccaaagccac
    10141 cagtgcccgc tggttcgcga gtaatcacgc ccggccagct gccgtggcat accagcggag
    10201 tcggatcttc cgcgtgacgc agatatacca gcacgcagtg gaaacgtgcc tgacgttggt
    10261 cgtccggtac gtctttcagt gtttccaaca gtttttgcag attcttttga tcggtcgcgt
    10321 cttcaccgga ataacgcgcg gagtaaatac ccggcgcgcc acccagcgca tctaccgcca
    10381 gaccagagtc gtcggcaatt gccggtaaac cggtcacttt tgccgcatgg cgcgctttca
    10441 gaatcgcgtt ttcgataaag gttaggccgg tttcttcagc ggaatcaacg ccgaggtctg
    10501 tttgtgccac gatatcaaga ccaaagtcgc taagcagcga cgccagctca cgcactttac
    10561 cggcattgcc ggttgcgagg acaacttttt gcataggata cctaattaat taacgccgcg
    10621 atttctggcg ggatttgttg cggattaatg attttaattt gtttgtggcg gccaagttcg
    10681 cctttttcaa tcaccacctg gcttttggca acccggaatt gcttaccgag aaacttcacc
    10741 agatgactgt tggcctggcc gtcaactggc ggcgcggtaa tggcgacttt aacttcgtcg
    10801 ccatgtaaac cgacaataga atcacggctg gctttcggct gaatatagag ccgtaaaacc
    10861 agaccgtcat cattaactgt tacggcattc ataacgccat ccacatcccc ggcagcagga
    10921 tgtttccggt tgcctgtaat acttctgcga cacccatatt gatgacatac agcagcagaa
    10981 cgaggatcat cggcgagaaa tcaatcccac ccattgccgg tagcaagcgg cgaatcgggc
    11041 gcagcagcgg atcggccagc tgaatcagca cgtattcaat cgggctacga ccctggctta
    11101 cccagctcat aatcgccatc accagcagga cccagaaaat cagcaagccg atggttttca
    11161 gcagaatcag taaaccggca atccagatga ttggcaggaa ggtcaccact ttaaacagca
    11221 caatggcttt gataaaactg agaatatagg caaccagcag cgaggcgctg tcaatgggac
    11281 ccattgccgg aataacgcgg cgcagtggcc cgataattgg ctgcgttacc ttcactacaa
    11341 actgtgagaa ggggttgtaa aaatcacaat gagcccactg catccagatg cgtaataaca
    11401 gcaccatggt atacagctca atgaccgttg aaagcaggaa agtcaacgta ttcatggcgt
    11461 tcctttaatt ccttattttt tagagtaatc acgcgcacca aaaattgcag tgccgatacg
    11521 aaccatcgtg ctacctgccg caatggcggc ttccatatcg tccgacattc ccagagagag
    11581 cgtgtcgata tgcgggtagc gcgttttcag tccggcaaat gctacagcca tttggcgtgc
    11641 aacttcaaac tgccttacat attctgactc aggcgcaggg attgccatca gcccgcgcag
    11701 acgtaaacgc ggtagttcag cgaccgccgc tgccagctcg tccagttctg ccagttgaat
    11761 cccggactta ctgttttcat cactaatatt aatttgaatc agtacgttaa gagggggaag
    11821 ttctgccggg cgctgatcgt tgaggcgggt agcaatgcgc aaacggtcga tggtatgaca
    11881 ccagtcgaaa tgctctgcca ccaggcggct tttattagac tgcaacgggc caataaaatg
    11941 ccattctaat cctgttacgc ccagttcctg aaagtggcga attttatcta ccccttcctg
    12001 aacgtagttt tcaccaaatt gacgctgccc ggcatcaatg gcttctgcga tggcgctcgc
    12061 aggttttgtt ttactgactg caagcagcgt aatttcttct ggagaacggc cgcaacgcgt
    12121 tgcagccgct gagattttgt cccggacctg tgccaggtta tgcgcaatat cgttcatttt
    12181 ccgaggatct tagtatgaat atggaagaaa ttgtggccct tagtgtaaag cataacgtct
    12241 cggatctaca cctgtgcagc gcctggcccg cacgatggcg cattcgcggg ctaatggaag
    12301 ctgcgccgtt tgatgcgctg gacgtcgaag agctactgcg ggagtggctg gatgacgatc
    12361 agcgggcaat attgctggaa aatggccagc tggattttgc cgtgtcgctg gcggaaaacc
    12421 agcgattgcg tggcagcgca ttcgcgcaac ggcatggcat ttcgctggcg ttacggctgt
    12481 taccttcgca ctgcccgcag ctcgaacagc ttggcgcacc aacggtattg ccggaattac
    12541 tcaagagcga gaatggcctg attctggtga cgggggcgac ggggagcggc aaatctacca
    12601 cgctggcggc gatggttggc tatctcaatc aacatgccga tgcgcatatt ctgacgctgg
    12661 aagatcctgt tgaatatatc tatgccagcc agcgatgttt gatccagcag cgggaaattg
    12721 gtttgcactg tatgacgttc gcatcgggat tgcgggccgc attgcgggaa gatcctgatg
    12781 tgattttgct cggagagctg cgtgacagcg agacaatccg tctggcactg acggcggcag
    12841 aaaccgggca tttggtgcta gcaacattac atacgcgtgg tgccgcgcag gcagttgagc
    12901 gactggtgga ttcatttccg gcgcaggaaa aagatcccgt acgtaatcaa ctggcaggta
    12961 gtttacgggc cgtgttgtca caaaagctgg aagtggataa acaggaagga cgcgtggcgc
    13021 tgtttgaatt attgattaac actcccgcgg tggggaattt gattcgcgaa gggaaaaccc
    13081 accagttacc gcatgttatt caaaccgggc agcaggtggg gatgataacg tttcagcaga
    13141 gttatcagca gcgggtgggg gaagggcgtt tgtgacgttg ccatgcccga tgcgcaagtt
    13201 tatagggcct ataaaggcaa taaatgtctg atgcgactct aacgcgtctt atcagaccta
    13261 cagccgctgc cagatgtgtg ctggataagg cgttcacgcc gcatccggca agatggcggt
    13321 aacgactatc cgccaggctt ttagatcgcc ttaatatccc tgctcgaaat agctttcgag
    13381 aataataacc gcagaggcag agtcgacttt gcctttgttg agcgcccgat agccgccctg
    13441 ttcaaacaga ccggaacggg cttccacggt gctaagacgt tcgtcatgga gctttacttc
    13501 aacaccgaaa cgaccatgaa tacggttggc aaatttacgc gctctggcag tcaatggttg
    13561 ctcggtgccg tccatattca gcggcaaacc gacgatgatt tcgtccggct gccactcttt
    13621 cagtaaacgt tcgatgaggt tccagtccgg cgtaccgtcc tgtgctttaa ttgcaggcaa
    13681 agggcgagca gtgccggtaa tgcgttggcc gaccgctacg ccaatgcttt tggtgccgaa
    13741 gtcgaaggcg agtaaggttc cactcatcag gcgtgccctg ccacaccagg catggtgaga
    13801 atatccacac caatcagttt tgccgcctcg cgccagcggt cggcaatcgg cgttttgaac
    13861 agaatattca gatccgccga ggccgttagc cacgcgttat cgagaatttc ttgttccagt
    13921 tgaccttttt cccaggaggc atagcccaga gccaccaata cgtcagacgg ttgtttatcg
    13981 gtgccgagcg tttccagcac atcgcgggaa gtggtcatca ccgtgttgtc tgaaatgcga
    14041 atgctggaag caaaattgga gggcggagta tgcaaaataa acccgcgatc ttcagccagt
    14101 gggccgccga gcataaccgg tttatccaga cggattgatt catcacgcgg ctccggcgtg
    14161 atcttcagct tttccagaat cccttcaatt ttgagatttt ccagcggctt gttgacgatg
    14221 atccccattg caccattggt attatgttcg caaatgtaga ccacggaacg acggaaaatc
    14281 ggatcctgga gagcaggcat ggcaataaga aagtgatgct gtaaattcat tgtcagaggt
    14341 tctgtttcct ggttcaaaaa agcaacagcg cccagtatgc gtggaaagaa gggcgctgtc
    14401 actcagagtc tcaacgagat ccttctcgct aaggtgggtt actgctgctg taaacgtgct
    14461 tcgatggcat ccattaacat tccggtgatc gacaccggaa actctgcttc aatctcacga
    14521 atacaggttg ggctggtgac gttaatttca gtcagacggt cgccgatgat atccagacca
    14581 acaaaaatca gccctttttc tttcagcgtc ggcccgatct gacgggcgat tttccagtca
    14641 ctttccgtca gcggccgagg ttcaccgcga ccaccggcag ccagattgcc acgggtttcg
    14701 cccccctgcg gaatacgcgc caggcagtac ggtaccggct cgccatccac caccagcacg
    14761 cgtttgtcgc catctttaat ggctggcagg taattttgcg ccatgcagta gcgagtgcca
    14821 tgctcagtca gggtttcggc aatcacgccg aggtttggat cgccttcttt cacgcggaaa
    14881 atcgacgcgc cgcccatacc gtccagcggc ttaagaatga tgtcgctgtg tttctcccag
    14941 aacgctttta gctgcgcttt attgcgcgta accagcgttt ctggcgttaa gtcagagaac
    15001 caggcggtaa acagtttctc gttacagtcg cgcaggctct gcggcttgtt aacgatcagc
    15061 gtccctttct cttcggcacg ttccagaata taggtcgcgt agataaactc ggtatcaaac
    15121 ggcgggtctt tacgcatcag gagcacatcg agatcggcca gcggcagatc ctgttcaccg
    15181 acgaacgaaa accactcttc gtagttctgc ttcacgttca gcgtgcgggt atgggcgcga
    15241 gcttcgccat tgatcagata cagatcgccc atctccatat agtgaagttc gtaaccacga
    15301 cgctgtgctt ccagcaacat agcgaaactg gaatctttct tgatgttgat gtttgcgatg
    15361 gggtccatca cgatgccgag cttgatcatt attcttctcc gttagcccaa atcgccaaat
    15421 cgtacttgta gcgcggtaat ggcggtgagc gcagttgtct ctgtacgcaa aacgcgaggt
    15481 cccaacagga tatcagtaaa ttgatagcgg gcagtcatgg caatttcatc tgccgataaa
    15541 ccaccttccg ggccaatcag caggcggacg cgttcaaccg gtaacggcaa cgtattgatg
    15601 ctgttactgg cgcgcgggtg aagattcagt ttcagtcctt catcctgctc tgcacaccag
    15661 gcttccagat ccatcgctgg acggatttcc ggcacccggt tacgaccaca ctgctcacag
    15721 gcagcaattg caatcttctg ccactgctgg agcttcttgt tcagacgttc actatccagt
    15781 ttaacgccgc agcgctcaga aaaaagtggc gtaatgaggc ttacaccgag ttcgatcgat
    15841 ttctggatcg taaattccat tttttcacca cgcgacatca cctgaccgag gtgaatatgc
    15901 agcggagatt cgcgatcgtc gatcttgcct tccagcacct tcacttccac gctttttttg
    15961 ctggcgctgg taatttcggc gtcaaagacc tggttgctac cgtcaaacaa ttgcaacgcc
    16021 tgccccggcc ccatgcgcag tacgcgcccg atatggttgg cggcatcttc gcaaagcgcg
    16081 atgtgagaat ggctggtcag tggttcagga tgataaatgc gggggatacg catagttaaa
    16141 aatccgcgtc gtctccccac gcggttgtac gcgtggggta ggggttaaca aaaagagtcc
    16201 cgctagtgta ggttagctct ttcgcgcctg gcaagcgcgt tgcacatacg ggttatgatt
    16261 gccttgcacc ttcgcgatgc gttcatcgcg ctcgcactcc cagtcggtaa ccggatacat
    16321 cttgttccat gcgttgaaca gctgcgtttg ctggcgagag agtgtcaggt tgtattggtc
    16381 gcgcatatag aagtaggtgc gcgcaatggc accgcgtgca cgcgctggtg gttcggcagc
    16441 tttttctttg aaatcgacct tcatggcgca ttgaccgtac tggccttcgc cgccattcca
    16501 ctggctgtac ataaagttgc cgcgatcgcc attcacctca ccgactgacg gctgcaggtt
    16561 atgcatatcg ctttccatct tgcgatagac cggatcttta gcgcagtttt tacgtccacc
    16621 gtcctgccag cactggcgct ggtgaccgaa ctgccaggcg ggaacgacgt gttcccactc
    16681 tacgcggctg gctcggtttt catttttgcg cacctgatag ccgcacgatt gcagatcaac
    16741 aacgcctttt ttgccctgcc agttaatttt acatccgcaa taaaacgtac cgggcgcgtc
    16801 agcgtggact tttaccgccg cggctttcgc ctgagaaaaa ctattgatac cttcggccaa
    16861 cgccgggccg gaaaatgctg cgctcagtac caccgcagca atagacaaat aacggtacat
    16921 cacttactcc gtgttaaaac gagccagcaa cgtagcgaaa gttgttttgg tatgcaatca
    16981 gccagatcag gaaagttcct gatagttcag atggttattt tgcgaccagt tgttcgccgc
    17041 agtgaacaca gcgatagacg gcttcgccac gaactacgcg attatggcgg cgtacggtaa
    17101 gctgatgctc ctggcacttg cagcggtagg ggaaggtgtt gcgacgcacg gattgcagtt
    17161 cgaactgatg cgtacgacgg gcgggaacac ccagcacgtt ttccatcatc cacttccact
    17221 ctttgccatg tggtgctacg cgcccgaaat gtttccatac cagcaaatgt gccagttcgt
    17281 gcggcaccac ttcttcaata aaggcttcac tgttttccaa cagcaaaacg ggattgaggc
    17341 ggatttcata gctttccagc caggctgttc cggcggaggt gccgcgctgg gtataagaga
    17401 gttttggctc cgggtagtta cgccccaatt tcaggttagc ctgggcgagt ttttcccgca
    17461 ggcgacgcat aacggcctgt tggatggcga tagggagacg ggatgttttc atagcggcag
    17521 aggatagagc gaagaaaaga tgactgcaag aggtggcttc ctccgcgatg ggaggaagct
    17581 tggggagatt aatcgtgagc gcctatttcg cgcagtttac gacctttcat cagattacgt
    17641 tcaatatgtt ccagcgaaac gtgtttggtt tccggtacca gccacaatgt cagcaggata
    17701 aacagtacgt tcagagccgc atacacccag aaggtgttgg cgttacccag tgtgttgagc
    17761 atggtcagga acgttgcgcc aacgatcatg ttggcaatcc agttggtggc ggtagagcag
    17821 gtgatgccaa aatcgcggcc tttcagcggc tgaatttcgg agcacagtac ccaaatcagc
    17881 ggaccggcac tcatggcaaa accgacaata aacatcagca gcatggcgat ggcgaaatac
    17941 tgcgctgacg gagagtgaat accgatatgc atcattgtac cgagtacgcc catgccagca
    18001 gccatcacca ggaagcccag cgttagcgtt ggtttacgtc cccagcggtc aacaaggccg
    18061 attgcgataa aggtggcaag tacgttggtc aggccgacaa tcactgtccc ccacatttgc
    18121 tcggtagtgt tggtataacc cgccagttcg aagattttcg gcgcgtaata catgatgacg
    18181 ttcatcccgg tgaattgctg cattacctgt aacagtacgc caaggaacac cgcgcggcgg
    18241 aagttgctat tctctttaaa cagcgcccag ccactctgtt taacctgcaa actttcacgg
    18301 atttcatcca gttcgcgttt cgcttccgcg ctggtgtcac gcaggcgtag cagcacgcgt
    18361 tcggcatcaa caaaacggcg tttggcggca aaccaacgtg ggctgtctgg caggaagaag
    18421 acaccaatca gcagcaaaat tgccgggatg ataatcacac ccagcatcca gcgccatgca
    18481 ccggtgtagc tgaaggcggt atcagaaaga taagcaccga ggatcccgat agtgatcatc
    18541 aactgataca tcgagatcat actgccacga attttttccg gcgcaatttc agagaggtac
    18601 agcggtgcgg tataagaggc cacacccacc gccagcccca gtagaacgcg ggaaagaatc
    18661 agtacttcaa cgtttggcgc agccgcagag aacagcgaac cggcaacaaa caaaattgcg
    18721 ccgatcatca ggctcttttt gcgcccgagt ttaaaggaga gccagccgct gcccaccgca
    18781 ccgactgccg caccgaacat catggagctt acgacccatt cttgcgtgtg cgaagtaatc
    18841 tggaattcat ctgcaataaa cggcagtgcg ccagcaatta caccgatatc caggccaaag
    18901 agtaatcccg ccagagcggc aaggaagcag acgaaaaacg tcattgcctt gtttgaccgc
    18961 ccctgttttt tagcgtcagg catgatgccc tccaatatgg ttatttttta ttgtgaatta
    19021 agataggtga gtacgacgta aaaagatgtg aagcaaatca catcagtgta atcgcttaca
    19081 ctaacattta tcttagttat ggtttaagtg catgaaaata attgagttat atcatcatag
    19141 attaaacgct gttatctgca attaagactt tactgaaaag aaatgtaaca actgtgaaaa
    19201 ctgaataata atatgaaaat attacaaata tttggctggt gttattggtg taatcggttt
    19261 cagtagtgat gataatttgc gataaaacgt gttgaggaag aatgatgtta ttgtgcgggc
    19321 agctttttgc cggatgcggc gtgaatgcct atccaccgcg gtgaggtaaa agaaaaaggc
    19381 cagcgcgagg ctggcctttg aaagcaggtg aagaaagatt acttcagacc ggcagcatcg
    19441 cgcagcagct gcgctttgtc ggttttttcc cacgggaaat gttcacgacc aaagtgaccg
    19501 tatgctgcgg tttctttgta gatcgggtgc agcagatcca gcatctgaat cagaccgtat
    19561 gggcgcaggt cgaagaactc acgtaccagc agagtcagtt gttcagaagg cactttctca
    19621 gtaccgaaag tttctaccat gatggaggtc ggttcagcca cgccgattgc gtaggaaacc
    19681 tgaatttcac aacgatcggc caggccagca gcaacgatgt ttttcgcgac ataacgtgct
    19741 gcgtaggctg cggaacggtc cacttttgat ggatctttac cagagaatgc tccgccaccg
    19801 tgacgtgcca tgccgccgta ggtatcaacg ataattttac gaccagtcag accgcagtca
    19861 cccatcgggc caccgataac aaaacgaccg gtcgggttga tgaagaatgt ggtggcagaa
    19921 gtcagccatt cagcgggcag aattggcttg atgatctctt ccattaccgc ttcttgcagc
    19981 gatttctggt cgatctcttc agagtgctga gtggaaagca cgacagcatc aataccaacg
    20041 attttgccgt cgtcatactg gaaagtcacc tggcttttcg cgtccgggcg cagccacggc
    20101 agagtgccgt ttttacgcac ttcagcctga cgctgtacca gacggtgtgc ataggtgata
    20161 ggtgctggca tcagcacgtc ggtttcatta gttgcgtagc caaacatcag accctggtca
    20221 cccgcgccct gttccagcgg atcggcacgg tcaacgccct ggttgatgtc aggagactgt
    20281 ttgccgatag cgctcagaac cgcacaggag ttagcgtcaa agcccatgtc ggaatgcaca
    20341 tagccaattt cgcgaacggt gttacgagtg atctcttcga tgtctaccca ggcgctggtg
    20401 gtgatttcgc cgccaactaa aaccatgccg gtttttacgt aggtttcgca agcaacgcgt
    20461 gctttcggat cctgttcgag gatcgcgtct aaaacggcat cagagatttg gtcagcaatt
    20521 ttgtcaggat gcccttcaga gacggactcg gacgtaaaaa ggtgttttgc catatttaat
    20581 atcacctaaa gagaatttgg ttagctcaaa ctgttgtgtg gattttctgt ggtagcggat
    20641 cctaccacga ctctgcaggt taaaaacact ggcagtctga gtgttaatcg gtatggatgg
    20701 attaacatct agatggctat tttaggtcaa ttcttcaccc gatttccact tttttttgaa
    20761 tcgtgtctca ttctgttaaa aacgtggctg gaaatttttt ctgacaatgc cggcattctg
    20821 cgtatttata ttttgcaatt ttctgccatt gtggggtata aaacgcggcg cgcggcttaa
    20881 ataaaaagca cacgacgttt ctttcgtgtt gccacttcca gccgggttga aatcagagtt
    20941 ttggcttgtg ggttcgtctt aacaggcggc cgtggaggtg atacgaaata atgaaccgta
    21001 gtctgctgct taacctgtct caccgttctg gtgaagattc gttccccgca ctctgcatct
    21061 ctgctttgca tacctgccga tgttataccc atctcggcgc ttctcaggat tcaagagctg
    21121 gttacagtta ctgaggactg aacaagggcg ctcttgtaaa aacaagagtt ttctcgtggt
    21181 ttcgccgaac tgtcacactt acgttcggtt atgtgcttaa taatgttatg aaaaagaaac
    21241 cggttgcgca gttggagcgt cagcattcac tgctggaaaa tccatgtgct tatgggttgt
    21301 tatcgcagtt ccaggctgcg atagtcgtta actgttttac acttaataaa ataatttgag
    21361 gttcgctatg tctgacgaca tgtctatggg tttgccttcg tcagcgggcg aacacggtgt
    21421 actacgctcc atgcaggagg ttgcaatgag ctcccaggaa gccagcaaga tgctgcgtac
    21481 ttacaatatt gcctggtggg gcaataacta ctatgacgtt aacgagctgg gccacatcag
    21541 cgtgtgcccg gacccggacg tcccggaagc tcgcgtcgat ctcgcgcagt tagtgaaaac
    21601 tcgtgaagca cagggtcagc gtctgcctgc actgttctgt ttcccacaga tcctgcagca
    21661 ccgtttgcgt tccattaacg ccgcgttcaa acgtgcgagg gaatcctacg gctataacgg
    21721 cgattacttc cttgtttatc cgatcaaagt taaccagcac cgccgcgtga ttgagtccct
    21781 gattcattcg ggcgaaccgc tgggtctgga agccggttcc aaagccgagt tgatggcagt
    21841 gctggcacat gctggcatga cccgtagcgt catcgtctgc aacggttata aagaccgcga
    21901 atatatccgc ctggcattaa ttggcgagaa gatggggcac aaggtctatc tggtcattga
    21961 gaagatgtca gaaatcgcca ttgtgctgga tgaagcagaa cgtctgaatg tcgttcctcg
    22021 tctgggcgtg cgtgcacgtc tggcttcgca gggctcgggt aaatggcagt cttccggcgg
    22081 ggaaaaatcg aagttcggcc tggctgcgac tcaggtactg caactggttg aaacgctgcg
    22141 tgaagctggg cgtctcgaca gcctgcaact actgcacttc cacctcggtt cgcagatggc
    22201 gaatattcgc gatatcgcca cgggcgttcg tgaatccgcg cgtttctatg tggaactgca
    22261 caagctgggc gtcaatattc agtgcttcga cgtcggcggc ggtctgggcg tggactatga
    22321 aggcacccgt tcgcagtctg actgctccgt aaactacggc ctcaatgaat atgccaacaa
    22381 catcatctgg gcgattggtg atgcgtgtga agaaaacggt ctgccgcatc cgacggtaat
    22441 caccgaatcg ggtcgtgcgg tgactgcgca tcacaccgtg ctggtgtcta atatcatcgg
    22501 cgtggaacgt aacgaataca cggtgccgac cgcgcctgca gaagatgcgc cgcgcgcgct
    22561 gcaaagcatg tgggaaacct ggcaggagat gcacgaaccg ggaactcgcc gttctctgcg
    22621 tgaatggtta cacgacagtc agatggatct gcacgacatt catatcggct actcttccgg
    22681 cacctttagc ctgcaagaac gtgcatgggc agaacaactc tatctgagca tgtgccatga
    22741 agtgcagaag caactggatc cgcaaaaccg tgcgcatcgt ccgataatcg acgaactgca
    22801 ggaacgtatg gcggacaaaa tgtacgtcaa tttctcgctg ttccagtcaa tgccggacgc
    22861 atgggggatc gaccagttgt tcccggttct gccgctggaa gggctggatc aagtgccgga
    22921 acgtcgcgct gtgctgctgg atattacctg tgactctgac ggtgctatcg accactatat
    22981 tgatggtgat ggtattgcca cgacaatgcc aatgccggag tacgatccag agaatccgcc
    23041 gatgctcggt ttctttatgg tcggcgcata tcaggagatc ctcggcaaca tgcacaacct
    23101 gttcggtgat accgaagcgg ttgacgtgtt cgtcttccct gacggtagtg tagaagtgga
    23161 actgtctgac gaaggcgata ccgttgcgga tatgctgcaa tatgtgcagc tcgatccgaa
    23221 aacgctgtta actcagttcc gcgatcaagt gaagaaaacc gatcttgatg ctgaactgca
    23281 acaacagttc cttgaagagt tcgaggcagg tttgtacggt tatacttatc tggaagatga
    23341 gtaagtccgt attacttgaa tccgcttaat ttagcggtga taatccgcca caatttattg
    23401 tgacaaatcc aacccttcct cgtcgggcct aacgacgcgg aagggttttt ttatatcgac
    23461 tttgtaatag gagtccatcc atgagcacct taggtcatca atacgataac tcactggttt
    23521 ccaacgcctt tggtttttta cgcctgccga tgaacttcca gccgtatgac agcgatgctg
    23581 actgggtgat tactggtgtg ccgttcgata tggccacttc tggtcgtgcg gggggacgcc
    23641 acggtccggc agcgatccgt caggtttcga cgaatcttgc ctgggaacac aatcgcttcc
    23701 cgtggaattt cgacatgcgt gagcgcctga acgtcgtgga ctgcggcgat ctggtatatg
    23761 cctttggcga tgcccgtgag atgagcgaaa aactgcaggc acacgccgag aagctgctgg
    23821 ctgccggtaa gcgtatgctc tctttcggtg gtgatcactt tgttacgctg ccgctgctgc
    23881 gtgctcatgc gaagcatttc ggcaaaatgg cgctggtaca ctttgacgcc cacaccgata
    23941 cctacgcgaa cggttgtgaa tttgaccacg gcaccatgtt ctataccgcg ccgaaagaag
    24001 gtctgatcga cccgaatcat tccgtgcaga ttggtattcg taccgagttt gataaagaca
    24061 acggttttac cgtgctggac gcctgccagg tgaacgatcg cagcgtggat gacgttatcg
    24121 cccaagtgaa acagattgtg ggtgatatgc cggtttacct gacctttgat atcgactgcc
    24181 tagatcctgc tttcgcgccg ggaaccggta cgccagtgat tggcggcctg acctccgatc
    24241 gcgccattaa actggtacgc ggcctgaaag atctcaacat tgttgggatg gacgtagtgg
    24301 aagtggctcc ggcatacgat cagtcggaaa tcaccgctct ggctgcggcg acgctggcgc
    24361 tggagatgct gtatattcag gcggcgaaaa agggcgagta agcaccagat gcgatgcgca
    24421 cgggtaaaac gtgccattaa tgtcggatgc ggcgtgaacg ccttatccga cctacgttcg
    24481 gcacccgtag gccggataag atgcgccagc atcgcatccg gcaatgcgca caaggtaaca
    24541 aatgtgccat taatgtcaga tgcggcgtga acgccttatc tgacctacgt tcgacaccac
    24601 caggctttac ttaatcccat ccgcgctcat gcgatcgcga atatgctggg cgcgttcggc
    24661 ggatgccgga tggtcgtcaa acattgagct ttggcggcct tcttccagtt tcgccagttt
    24721 ttcaaagctg gtggcaagac ctgccgggct gatgccgcgt tggcgcagaa gatcgtaaga
    24781 ataatcatcg gcttctgctt cctggcgctg ggagaattgc gaattgacta atttctcgcc
    24841 cagatcacca agttgtgatt gagataaact gccgacaatc ccgcccgcag aggccgcagc
    24901 tactcgcacg gcatttgtac caagcgccac ctgcatccct ttcttcacat ggcctaacgc
    24961 cacgtgcccc atctcgtgac cgatcaccgc ttcgacttcg ttatccgtca tcatatccat
    25021 cagcccgcta tagacgcgga tacagccgtt agccattgca aaggcgttca catccttcgc
    25081 catatacact ttgtaattca ccggctgacc gttgatattg ttgcctagcg cattggcaat
    25141 agttgtcaga cgtttagcgt attcgctatt ggctggcgca atcgtcgcct tgctgtccat
    25201 ctcctgacat gcctgatcgc tcagggtttt cacctgcgca tcactcaaac tgtaagcctg
    25261 aaaagcttcc gctcctgatg agagcagtcc gttggagtcc atattctggc aaccagtcag
    25321 taccgttgcc acgctcattg ctaccaataa ggcgcgaatt ttcatgtttt ctcttccgca
    25381 caaggtcagg attattctaa aaatgcgccg tttgcaggtg aatcgacgct cagtctcagt
    25441 ataaggaaaa gcgcagcgga cgggcgagta gattgcgcaa catgcgagca tgatccagag
    25501 atttctgaag cggcaaaagg atgttccatg tacatgacgc gcggcttgcg gtaaattgtt
    25561 ggcaaatttt ccggcgtagc ccaaaacgcg ctgtcgtcaa gtcgttaagg gcgtgccctt
    25621 catcatccga tctggagtca aaatgtcctc acgtaaagag cttgccaatg ctattcgtgc
    25681 gctgagcatg gacgcagtac agaaagccaa atccggtcac ccgggtgccc ctatgggtat
    25741 ggctgacatt gccgaagtcc tgtggcgtga tttcctgaaa cacaacccgc agaatccgtc
    25801 ctgggctgac cgtgaccgct tcgtgctgtc caacggccac ggctccatgc tgatctacag
    25861 cctgctgcac ctcaccggtt acgatctgcc gatggaagaa ctgaaaaact tccgtcagct
    25921 gcactctaaa actccgggcc acccggaagt gggttacacc gctggtgtgg aaaccaccac
    25981 cggtccgctg ggtcagggta ttgccaacgc agtcggtatg gcgattgcag aaaaaacgct
    26041 ggcggcgcag tttaaccgtc cgggccacga cattgtcgac cactacacct acgccttcat
    26101 gggcgacggc tgcatgatgg aaggcatctc ccacgaagtt tgctctctgg cgggtacgct
    26161 gaagctgggt aaactgattg cgttctacga tgacaacggt atctctattg atggtcacgt
    26221 tgaaggctgg ttcaccgacg acaccgcaat gcgtttcgaa gcttacggct ggcacgttat
    26281 tcgcgacatc gacggtcatg acgcggcatc catcaaacgc gcagtagaag aagcgcgcgc
    26341 agtgactgac aaaccgtccc tgctgatgtg caaaaccatc atcggtttcg gttccccgaa
    26401 caaagccggt actcacgact cccacggtgc gccgctgggc gacgctgaaa ttgccctgac
    26461 ccgcgaacag ctgggctgga aatatgcacc gttcgaaatc ccgtctgaaa tctatgctca
    26521 gtgggatgcg aaagaagcag gccaggcgaa agaatccgca tggaacgaga aattcgctgc
    26581 ttacgcgaaa gcttatccgc aggaagccgc tgaatttacc cgccgtatga aaggcgaaat
    26641 gccgtctgac ttcgacgcga aagcaaaaga gttcattgct aaactgcagg ctaacccggc
    26701 gaaaatcgcc agccgtaaag cgtctcagaa tgctatcgaa gctttcggtc cgctgttgcc
    26761 ggaattcctc ggcggttctg ctgacctggc accgtctaac ctgaccctgt ggtctggttc
    26821 taaagcaatc aacgaagatg ctgcgggtaa ctacatccac tacggtgttc gcgagttcgg
    26881 tatgaccgcg attgctaacg gtatctccct gcacggtggt ttcctgccgt acacctccac
    26941 cttcctgatg ttcgtggaat acgcacgtaa cgccgtacgt atggctgcgc tgatgaaaca
    27001 gcgtcaggtg atggtttaca cccacgactc catcggtctg ggcgaagatg gcccgactca
    27061 ccagccggta gagcaggtcg cttctctgcg cgtaaccccg aacatgtcta catggcgtcc
    27121 gtgtgaccag gttgaatccg cggtcgcgtg gaaatacggt gttgagcgtc aggacggccc
    27181 gaccgcactg atcctctccc gtcagaacct ggcgcagcag gaacgaactg aagagcaact
    27241 ggcaaacatc gcgcgcggtg gttatgtgct gaaagactgc gccggtcagc cggaactgat
    27301 tttcatcgct accggttcag aagttgaact ggctgttgct gcctacgaaa aactgactgc
    27361 cgaaggcgtg aaagcgcgcg tggtgtccat gccgtctacc gacgcatttg acaagcagga
    27421 tgctgcttac cgtgaatccg tactgccgaa agcggttact gcacgcgttg cggtagaagc
    27481 gggtattgct gactactggt acaagtatgt tggcctgaat ggcgctatca tcggtatgac
    27541 caccttcggt gagtcagctc cggcagagtt gctgttcgaa gagttcggct tcaccgtcga
    27601 caacgtcgtt gcgaaagcaa aagaactgct gtaattagca tttcgggtaa aaaggtcgct
    27661 tcggcgacct tttttattac cttgatatgt ccgtttgcgg acaagcaata gataaagcgt
    27721 gttgcagatc acaaatattt atatgcaata aatatcaatt atgtaatatg catcacgata
    27781 tgcgtattga catttgttgt tatatctata actcaatgtt atataagaaa ttaataattc
    27841 actgttttca aaacaccggt ttccctgctc aattgctttc attaaaccgc acgagtattt
    27901 tatttttacc gccggacggt accctaaaaa taaaataagg ataatttatg cggcttagtg
    27961 actattttcc agaatcatca atctcagtta tacattcagc aaaagattgg caggaagcta
    28021 tcgatttctc gatggtatca ttgctggata aaaactatat cagcgagaat tacattcagg
    28081 caattaaaga ttccaccatt aacaatggcc cttattatat tctcgcacca ggcgtggcaa
    28141 tgcctcatgc gcgaccggaa tgtggggcgc ttaaaaccgg gatgtctttg acattacttg
    28201 aacaaggtgt ttattttccg gggaatgacg aaccaattaa attactcatc ggactctctg
    28261 ctgccgatgc cgattcgcac attggcgcta ttcaggcgtt aagtgaatta ctgtgcgaag
    28321 aagaaatact cgaacaactc ttaacagcat catcagaaaa acaattagcg gacattatca
    28381 gccacagata attactctct cctctacagg ataatattat ggaaaacaag tctgctcgtg
    28441 caaaggtcca ggcttttggg ggctttttga ctgcaatggt catccccaat attggtgctt
    28501 ttattgcctg gggttttatt actgcgttat ttattcccac cggttggctg cctaacgaac
    28561 atttcgccaa aattgtcggc ccgatgatta cctatttatt gcccgtgatg attggttcta
    28621 caggtggtca tctggtcggc ggtaaacgcg gggcggtcat gggcggaata ggtactattg
    28681 gtgtgatcgt tggcgcagag atcccgatgt tccttggctc aatgatcatg gggccgctcg
    28741 gtgggttggt cataaaatat gtcgataagg cactggaaaa acgcatacct gccggttttg
    28801 agatggttat caataacttc tcattaggta tcgcggggat gctcctttgt ctgctgggtt
    28861 ttgaagtgat cggcccggcg gtgttaattg ccaatacttt cgtcaaagag tgtatcgagg
    28921 cgctggtaca tgcgggttat ctgcctctgc tgtcagtcat caatgaaccg gcgaaagtgc
    28981 ttttccttaa taatgcgatc gatcagggcg tctattatcc gctgggaatg caacaggctt
    29041 cggttaacgg taaatccatc ttctttatgg tggcctctaa cccaggtccg ggcctggggc
    29101 tgctgctggc gtttaccttg tttggtaaag ggatgagtaa acgttctgcg cccggggcga
    29161 tgattattca cttcctcggt gggatccacg aactgtattt cccatatgtg ctgatgaagc
    29221 cgctgactat tattgccatg attgcgggcg gtatgtctgg tacctggatg tttaacttac
    29281 tggacggtgg tctggtggct ggcccaagtc tggggtctat ctttgcttac ctggcactga
    29341 cgccgaaagg ctcgttcctg gcgacaattg ccggtgttac ggtaggtacc ctggtgtcct
    29401 ttgctattac ttcgctgata ctgaagatgg aaaaaacggt ggaaacggag agcgaagatg
    29461 agtttgctca gtcaaccaat gcggttaagg cgatgaaaca agagggtgca ttctcgttaa
    29521 gcagggttaa gcgtatcgcc tttgtttgcg atacggggat gggctccagt gcgatgggcg
    29581 cgaccacctt ccgtaaacgc ctggaaaaag cggggctggc aatagaagta aaacattacg
    29641 cgatagaaaa cgtgcctgcg gatgccgata tcgtcgtcac tcacgccagt ctggaagggc
    29701 gcgtgaaacg tgtgacggat aaaccgctga tattgattaa taactatatt ggcgatccaa
    29761 aactcgacac tttatttaat caattaaccg ccgaacataa acactgatta cagaggtaaa
    29821 aatgaaaacc aaagttgctg ctatttatgg caagcgggat gtccgtctgc gcgaatttga
    29881 actgccagaa attaccgata atgaactgtt agtgagtgta atttctgaca gcgtctgttt
    29941 atcgacctgg aaagcggcgt tactcggtag tgaacataaa cgcgtacccg acgatttaga
    30001 aaatcatccg gtcattaccg ggcatgaatg tgccggggtt attgtcgaag tgggtaaaaa
    30061 tctcactggc aaatataaaa aaggccagcg ttttgtattg caaccggcga tggggttacc
    30121 aagcggatat tcagcaggct acagctacga atattttggc ggtaacgcca cctatatgat
    30181 tattcccgaa atcgccatta atttgggctg cgtattaccg tatcacggct cttattttgc
    30241 tgcggcgtcg ctggtagagc ctatgtgctg cattattggt gcttatcatg ccaattatca
    30301 caccacgcaa tatgtttatg agcatcgcat gggcgtcaaa cctggcggca atattgcact
    30361 gctggcgtgt gcgggtccga tgggcattgg cgctatcgat tacgccatta acggtggcat
    30421 acaaccgtca cgggtggtgg tggtcgatat cgacgacaaa cgcctggcgc aggtgcagaa
    30481 gctgctgccg gtggatctgg cggccagtaa aggcattgag ctggtgtatg tgaataccaa
    30541 agggatgagc gatccggtcc agacgctgcg ggcgctgaca ggagatgtcg ggttcgatga
    30601 catttttgtt tatgcggcgg tgcctgctgt cgttgagatg gctgacgaat tactggcgga
    30661 agatggctgt ctgaacttct ttgccgggcc gacggataaa aacttcaaag tgccgtttaa
    30721 tttctacaac gtccattaca acagcacgca cgtagtcggt acatccggcg gttcaacgga
    30781 cgacatgaaa gaggcgattg cgttaagcgc cacggggcag ttgcagccgt cctttatggt
    30841 cacgcatatc ggtgggctgg atgcggtgcc agataccgtg ctcaatctgc cggatatccc
    30901 tggcggtaaa aaactcattt ataacggcgt gaccatgccg ctcactgcca ttgccgattt
    30961 tgccgaaaaa ggcaaaaccg atccgctatt taaagagttg gcgcggctgg ttgaggaaac
    31021 gcacggcatc tggaatgaac aggccgagaa atatctgctg gcacaatttg gcattgatat
    31081 cggggaggcc gcgcaatgat gtccctggcg tggccattat ttcgcgttac ggaacaggca
    31141 gcgttagctg cctggccgca aaccggatgt ggcgacaaaa ataaaattga tggcctggcg
    31201 gtcaccgcga tgcgccaggc attaaacgac gtcgcttttc gtggacgagt ggttatcggc
    31261 gaaggagaaa ttgaccatgc gccgatgctg tggattggcg aagaggtggg caaaggcgat
    31321 gggccagaag tcgatatcgc ggttgatccc attgaaggca cgcggatggt ggcgatgggg
    31381 cagagcaatg cgctggcggt catggctttc gcccctcggg atagcctgtt acatgcgccc
    31441 gatatgtata tgaaaaagct ggttgttaat cgactggctg ccggggtgat tgatctgtct
    31501 ttgcctctgg cggacaactt gcgtaacgtg gcgcgggcgt taggtaaacc gctggacaag
    31561 ctgcgcatgg ttacgctgga taaaccgcgc ctgagtgccg cgattgagga agcaacacag
    31621 ctgggcgtga aggtttttgc cctgccggat ggcgatgtcg ccgccagcgt gctgacctgc
    31681 tggcaggata atccttacga tgtgatgtac accatcggcg gtgcgccaga aggcgtgatt
    31741 tctgcctgtg ccgttaaagc attaggcggg gatatgcagg ccgagctgat tgacttttgt
    31801 caggctaaag gggattacac ggaaaatcgg cagattgcag agcaggagag caagcgttgc
    31861 aaggcaatgg gcgttgacgt taaccgtgtg tactcgctcg atgaactggt gagggggaac
    31921 gatatcctct ttagcgctac gggcgtgacg ggcggcgagt tggtgaacgg tatccaacag
    31981 acggcgaatg gggtgcggac gcagacatta ctgatcggcg gcgcggacca aacgtgtaat
    32041 ataatagact ccctgcattg atggtgatct atcggaagac caatggcgaa gctgacagaa
    32101 gatgatgtgc ttgagcaact ggatgcacag gacaatttat tttcatttat gaaaactgcg
    32161 cattctattt tgctccaggg gatacgccag tttctgccgt cgctgtttgt cgataacgat
    32221 gaagagatcg tggaatatgc agtgaagccg ttactcgccc aaagcggccc gcttgacgat
    32281 attgatgttg cgctgcgttt gatttatgcg ctggggaaaa tggataaatg gctgtacgcc
    32341 gatatcacgc atttttccca gttctggcat tacctgaacg aacaggatga aacgcccgga
    32401 tttgccgatg acatgacctg ggattttatc agcaacgtca atagcataac ccgcaatgcg
    32461 atgctctatg acgcgttgaa agcgatgaag ttcgccgatt tcgccgtctg gtcagaggcg
    32521 cgttttagcg ggatggtcaa aacggcgctg acgctggcag taacgacaat cttaaaggaa
    32581 ttaacgccgt gaaaattgaa ttaacggtga atgggctgaa gatacaggca cagtaccaga
    32641 acgaagagat tgaaaatgta cataaaccgt tgctgcgtat gctggcggcc ttacagacgg
    32701 taaatccgca gcggcgtacg gtggtttttc tttgcgctcc gccggggacg ggtaaatcta
    32761 ccctaaccac cttctgggaa tatctcgcgc aacaagaccc ggagctgccc gctattcaga
    32821 cgctcccgat ggatggtttt caccattaca atagctggct ggacgcgcat caattgcgcc
    32881 ccttcaaagg cgcaccagag acatttgacg ttgcgaaact ggcggaaaat ctgcgccagg
    32941 tggtggaagg ggattgtacg tggccgcagt acgatcgaca aaagcatgat cctgttgaag
    33001 atgcgttgca cgttaccgca ccactcgtca tcgtcgaagg aaactggttg ttgctggacg
    33061 acgagaagtg gtgccagctt gcgcaatttt gtgatttctc gatctttatc aacgcgccag
    33121 ctactgcgtt gcgggagcgt ctggtggggc gcaagctggc gggaggggta tcgctggcag
    33181 atgcagaaac cttttatgac cgtaccgacg ggccgaatgt tcgccgggtg ctggaagaga
    33241 gtctgcctgc aaatttgacc ttaatgatga ccgctacggg tgaatatcgt ctggtggatt
    33301 aacgttcctg attacaccat cttccagtcg caccacacga gagaaatgac gccgggtaaa
    33361 tgcggcgtca tgactgattg ctaccacgct cgtgcctcgc tggcggcact tctccagcca
    33421 gctttcaaac acgctcaacc aattttcgtc aaaatcccga ctcggctcgt ccagcagtaa
    33481 tagtggcgga gagagtgctt ccaggcaggc gacggcgacc atccgtcgct gcgcactatg
    33541 cagatccaac gggtgcgagt tggcagtgtc tgctaactga caacattgca gggcagcatg
    33601 ggtacgttga gtgatttcat ccgccgggca tttttgcagt ttcaaaccaa atgcgatctc
    33661 gtcagcgacg gtgctgtgaa aaagttggtt ttccgcttcc tgaaacagta cgccaacctt
    33721 tgccgcgcgc tggcggtttt tcaggttttt catcgcctgt tgttgcagca taaccgtacc
    33781 ggctgtgggc gtaagaagac ctgccattac tcgtaacagc gtcgatttcc ctgcgccatt
    33841 gtcaccggtc agcgccaacc attcaccttg tttgagttgc agagaaatgt cgcaaagaca
    33901 atccgttgcc gcgccaggcc agcgataaga tatctgattt aacgttaaca tagtggctgg
    33961 agcgctccgt tttgcaattg ccacgcttgc tggcagtagt tcaggaaagg tgtgcgatga
    34021 cgttcaaaaa gaataatcag cgaaccacgt tcaaacgccc agtgttgtaa gcgctgcaac
    34081 agcatttcgc tggcctgcgg cgtcaggcgg ctaaaggctt catcaagaat taagagcttt
    34141 ggctgcatcg cgatggcgca ggcgatgacc acgcgctgtg tctctccacc ggagagtgtt
    34201 gccgggtgac gatggcgcaa cggctggcac tcggtcagag tcagggcggc atcaatccgc
    34261 gccataatct ctgcttcagc aagacacaga ttttctggcc caaaggcaac ttcttcttcc
    34321 acgctaaagg tacagccgga gagctgcaaa tagggcgatt gctggacgag ctggatggtg
    34381 gcggattgtt cattaagcgg gagatgccca atgggcgtac cgaggagcgt ccccgtgcct
    34441 gttatctctc ctggcagaaa gtccggatac cagcccgcca tcagctgtgc cagcgtactt
    34501 ttgccactgc cgttgtcacc aaagatggcg accatccccg gtttgacata gtgaaagtca
    34561 taacagaacg gaggatgcgt tgagtgtgtc gggcaataac ggaactgttc taacgtaacc
    34621 atatccacgc tccgaattct gtcagcatca gcaagatcat ggtgtaacgc gctacgcgtt
    34681 gtagggtgct atcggctggt gcccacaacg ttgttcgtcg gttgtggatc cgaaatgccc
    34741 gcatatccag cgccgcacct cggacagcca gatcgttaag cgcattgtgt gttagcggaa
    34801 taattaacgc gggcatcgca cgtaaacgct gataccagcc ctcatccagc ggcacgccgc
    34861 gggcacgctg cgcttcatga ataatcgcta attgccgttt taactgctca acgaccaata
    34921 acggcccggc aaacagataa gcgacgcctg gcggcaggcg agaagcaaac agagcgcgaa
    34981 taaaacattg cacggggacg tactgcatcc acaactgtga ggttgaaaca atcaccagaa
    35041 tccgcaacca gagcgtaata gcatgcgacc accgttctgg cgagcgtggc gtgccgctta
    35101 gccattctgg tagccagcca ccgtgtacca gccacagtcc ggctcccagc gagaacatca
    35161 gccagacgac atattttgcc cgccgccgcg tggcctttag cgcaataagg cagaaaaagg
    35221 tcgccgcgct atagatcggc aaaatggtct gcgcgggcag gataagcgtg gtgcaggccg
    35281 ccaatgccca cagtgttaat gaggtaaatg gatgcattta gcgcacggca gccattgccg
    35341 gaaaatggcg cgtggtgcga atcggcagct ggcgcagtaa aagccagaca atcaccgctg
    35401 taagaatttt atcgaccagg ttcgcgccta tcaccgtaat cgccaccgac tccaccaggt
    35461 tttgccccat cgagtgcatc caggcaacga acaaatcggc tccgctaccg gtgacaccgc
    35521 cgaacagcgc agtacgcagc ggtacagcga cgaccgttac cgcaagcgta ataatcacgc
    35581 cgctgacaac gacttttggc agggtgcgaa accaacccgc tcgcgccagc caaccggcga
    35641 ccaggccgat gaccatcgcg acgggtgcaa atgcggcggc gatcgggtcg gtcagcaatc
    35701 cccagagtaa attggtcagt aagccggtca gcattccgat caccggacca agcagtaccg
    35761 cgctaataag tgtgccgatg gagtcgagaa atataggtaa tttgaccatg ctggccagtt
    35821 gcccgccgat catattgatg gcgatagata taacgatcaa caccagtgcc tgactggaaa
    35881 agtggctacg cgccataaga aaacctcttt gaaagtagtt atttaacggg ggaaatatgc
    35941 aactcgtcgt aaccagaaag cgcgcaaggt tggcggctaa acgccagttc ctcaaggcta
    36001 ccgatcacca gttcaagcgt ggtccgcacg gtacagccgg gcatcatatg accgccaagc
    36061 atcgtgccgt gtggatcgga aacgcagaga tgaagatgct caccactctg ttccagcgtg
    36121 ccgtttagtg agatcacttc gaatgtaccg ttcaggagcg tggtgccttc ttgcctggca
    36181 tagcgcaagg cgacgtcagt caggctaccg gtacagcctg caatccaggc ggcatgaagt
    36241 tgatgctgct gtgcaaaagc gtgtagctgg gaaaaaactt cctgcccggg gaggaggcgc
    36301 agtgcgtaaa agcgtgcgga ggaagaatat gggtagggca atgtcatcat tggagtactc
    36361 cgaaactcgg acgtattgcg gataatatcg acgctgcatc agtcatattc tgatataagt
    36421 cagggtttgt gacggcacaa cgaaaagatt ttgctacgct tattcgtgat tctgcaaagt
    36481 ggaataaatt ctacaggggc ggggctgaaa acgtgacgta agtcagataa ttgctttctt
    36541 tgactggaca atcattcctt ttattccacg tttcgcttat cctagctgaa gcgtttcagt
    36601 cgattaaatg ttcgacaatt aaccaatcag tcgcagtttg cgacaggtaa ggtttccccg
    36661 gacgatttgc tggattactc tgtctggcaa atttgctcag ggaaaacctt gcaggagatc
    36721 tatgaccgta cgcgtagcga taaatggctt cggtcgcatc gggcgtaatg tggttcgtgc
    36781 tttgtatgaa tccggacgcc gggcggaaat taccgtggtg gcaatcaacg aactggcgga
    36841 tgctgcgggc atggcgcatt tgttgaaata tgacaccagc catggccgtt ttgcatggga
    36901 agtacgacag gaacgcgatc aactttttgt tggtgatgac gccatccgcg tattgcatga
    36961 acgttcactg caatcgctcc cctggcgtga acttggcgtt gatgtagtcc tcgactgcac
    37021 cggcgtatat ggctcccgcg agcatggcga agcgcatatt gccgccgggg ccaaaaaagt
    37081 gctcttttca catcctggca gtaacgatct cgacgcgacc gttgtttacg gcgtcaatca
    37141 ggatcaactt cgtgcggaac accgcatcgt ttctaacgct tcctgtacca cgaattgcat
    37201 aattcccgtc atcaaattgt tagatgatgc gtacggtatt gagtccggca ctgtgaccac
    37261 aattcactcc gccatgcacg atcaacaggt tattgatgca taccatcctg acctgcgtcg
    37321 cacccgggca gccagccagt cgatcattcc ggtcgatact aaactggccg ccggtatcac
    37381 acgatttttt ccgcaattta acgatcgctt tgaagcgatt gcggtacgtg tgccaaccat
    37441 aaatgtgacg gcaatcgatt taagcgtgac ggtgaagaaa cctgtaaaag ccaatgaagt
    37501 caacctgttg ctgcaaaaag cagcacaagg tgcatttcat ggtatagttg actatacgga
    37561 attgccgttg gtctctgtag attttaacca cgatccgcac agtgccattg tcgatggcac
    37621 ccaaacccgg gtcagtggcg cacacctgat caaaacgttg gtctggtgcg ataacgaatg
    37681 gggctttgct aaccgaatgc tcgacacgac gttagctatg gctactgttg ctttcaggta
    37741 agacgcaagc agcgtctgca aaacttttag aatcaacgag aggattcacc atgtctgtaa
    37801 ttaagatgac cgatctggat cttgctggga aacgtgtatt tatccgtgcg gatctgaacg
    37861 taccagtaaa agacgggaaa gtaaccagcg acgcgcgtat ccgtgcttct ctgccgacca
    37921 tcgaactggc cctgaaacaa ggcgcaaaag tgatggtaac ttcccacctg ggtcgtccta
    37981 ccgaaggcga gtacaacgaa gaattctctc tgctgccggt tgttaactac ctgaaagaca
    38041 aactgtctaa cccggttcgt ctggttaaag attacctcga cggcgttgac gttgctgaag
    38101 gtgaactggt tgttctggaa aacgttcgct tcaacaaagg cgagaagaaa gacgacgaaa
    38161 ccctgtccaa aaaatacgct gcactgtgtg acgtgttcgt aatggacgca ttcggtactg
    38221 ctcaccgcgc gcaggcttct actcacggta tcggtaaatt cgctgacgtt gcgtgcgcag
    38281 gcccgctgct ggcagctgaa ctggacgcgc tgggtaaagc actgaaagaa cctgctcgcc
    38341 cgatggtggc tatcgttggt ggttctaaag tatctaccaa actgaccgtt ttggactccc
    38401 tgtctaaaat cgctgaccag ctgattgttg gtggtggtat cgctaacacc tttatcgcgg
    38461 cacaaggcca cgatgtgggt aaatccctgt acgaagctga cctggttgac gaagctaaac
    38521 gtctgctgac cacctgcaac atcccggttc cgtctgatgt tcgcgtagca accgagttct
    38581 ctgaaactgc accggctacc ctgaaatctg ttaacgatgt gaaagctgac gagcagatcc
    38641 tggatatcgg tgatgcttcc gctcaggaac tggctgaaat cctgaagaat gcgaaaacca
    38701 ttctgtggaa cggtccggtt ggcgtgttcg aattcccgaa cttccgcaaa ggtactgaaa
    38761 tcgtggctaa cgctatcgca gacagcgaag cgttctccat cgctggcggc ggcgacactc
    38821 tggcagcaat cgacctgttc ggcattgctg acaaaatctc ctacatctcc actggcggcg
    38881 gcgcattcct cgaattcgtg gaaggtaaag tactgcctgc agtagcgatg ctcgaagagc
    38941 gcgctaagaa gtaaaaaatc acagggcagg gaaacctgcc cttgtttcag cgcgctttta
    39001 gagcacgcat tttttcatac tctaaataat tcgagttgca ggaaggcgac aagagagtga
    39061 atccccagga gcttacataa gtaagtgact ggggtgagcg aacgcagacg cagcacatgc
    39121 aacttgaagt atgatgagta taaggcccga cgatacagga caagagacat gtctaagatt
    39181 tttgatttcg taaaacctgg cgtaatcact ggtgatgacg tacagaaagt tttccaggta
    39241 gcaaaagaaa acaacttcgc actgccagca gtaaactgcg tcggtactga ctccatcaac
    39301 gccgtactgg aaactgctgc taaagttaaa gcgccggtta tcgttcagtt ctccaacggt
    39361 ggtgcttcct ttatcgctgg taaaggcgtg aaatctgacg ttccgcaggg tgctgctatc
    39421 ctgggcgcga tctctggtgc gcatcacgtt caccagatgg ctgaacatta tggtgttccg
    39481 gttatcctgc acactgacca ctgcgcgaag aaactgctgc cgtggatcga cggtctgctg
    39541 gacgcgggtg aaaaacactt cgcagctacc ggtaagccgc tgttctcttc tcacatgatc
    39601 gacctgtctg aagaatctct gcaagagaac atcgaaatct gctctaaata cctggagcgt
    39661 atgtccaaaa tcggcatgac tctggaaatc gaactgggtt gcaccggtgg tgaagaagac
    39721 ggcgtggaca acagccacat ggacgcttct gcactgtaca cccagccgga agacgttgat
    39781 tacgcataca ccgagctgag caaaatcagc ccgcgtttca ccatcgctgc gtccttcggt
    39841 aacgtacacg gtgtttacaa gccgggtaac gtggttctga ctccgaccat cctgcgtgat
    39901 tctcaggaat atgtttctaa gaaacacaac ctgccgcaca acagcctgag cttcgtattc
    39961 cacggtggtt ccggttctac tgctcaggaa atcaaagact ccgtaagcta cggcgtagtg
    40021 aaaatgaaca tcgataccga tacccaatgg gcaacctggg aaggcgttct gaactactac
    40081 aaagcgaacg aagcttatct gcagggtcag ctgggtaacc cgaaaggcga agatcagccg
    40141 aacaagaaat actacgatcc gcgcgtatgg ctgcgtgccg gtcagacttc gatgatcgct
    40201 cgtctggaaa aagcattcca ggaactgaac gcgatcgacg ttctgtaaga tattcctttc
    40261 tgcttatctc aaggcccgct ctgcgggtct ttttttcgcc aaaagcaaaa ttgcctgatg
    40321 cgctacgctt atcaggccta cacgtatcct gcaatatatt gaatttgcag gtttttgtag
    40381 gccggataag gcgttcacgc cgcatccggc atgacaaagc gcacattgat atctgtctga
    40441 gccccgctct gcggggattt tttcgccaaa agcaaggtga ttcagatgag aaatctgtga
    40501 cctatttggc aaaattatgc tttattgttt acccttgtca gactgcccgt cataaggcgg
    40561 cggagtgtat ttctccattt tgagtcagtt gaaaaggaat attgaatgga agatttgaat
    40621 gttgtcgata gcataaacgg cgcgggaagc tggctggtag ctaaccaggc gctgctgcta
    40681 agttatgcag taaacatcgt ggcggcactc gcgatcatca tcgttggttt gattatcgcg
    40741 cggatgattt ccaacgcggt gaatcgcctg atgatctccc gtaaaatcga tgccactgtt
    40801 gctgattttc tttctgcatt agtccgttac ggtattatcg cctttacgct aatcgctgcc
    40861 ctgggacgcg tgggtgtaca aacagcgtca gtcattgctg tactcggtgc cgcaggctta
    40921 gctgttggtc tggctttgca ggggtcactt tctaacctgg ccgctggcgt gttacttgtc
    40981 atgttccgac cgttccgtgc cggagaatat gttgacctcg gcggcgtagc cggtactgtg
    41041 ctgagtgtgc agattttctc caccaccatg cgtactgcag acggtaaaat tatcgttatt
    41101 ccgaacggta aaattattgc cggaaatatt attaacttct cccgcgagcc agttcgccgt
    41161 aacgaattta ttattggcgt ggcgtatgat tccgatatcg atcaggttaa gcagatcctg
    41221 accaatatta tccagtctga agatcgcatt ttgaaagatc gcgaaatgac tgtgcgcctg
    41281 aacgaacttg gtgcatcgtc gattaatttc gtggtccgcg tctggagcaa cagcggcgat
    41341 ctgcaaaacg tgtactggga tgtgctggag cgtattaaac gtgaatttga tgccgccggt
    41401 atcagcttcc cgtacccgca aatggatgtg aactttaagc gggtgaaaga agacaaagct
    41461 gcgtaatcaa cgctgaggcc agataatact ctctggcctc tctcttatta gttattctga
    41521 ttgccaatta atattatcaa tttccgctaa taacaatccc gcgatatagt ctctgcatca
    41581 gatacttaat tcggaatatc caacgtgttt tcttattact ttcaaggtct tgatcttggg
    41641 gcagctatga ttctgccgct cggcccacaa aatgcttttg tgatgaatca gggcattcgt
    41701 cgtcagtacc acattatgat tgccttactt tgcgctatca gcgatttggt cctgatttgc
    41761 gcggggattt ttggtggtag cgcgttattg atgcagtcgc cgtggttgct ggcgctggtc
    41821 acctggggcg gcgtagtctt cttgctctgg tatggttttg gcgcttttaa aacagcgatg
    41881 agtagtaata ttgagttagc tagtgccgaa gtcctgaagc aaggcagatg gaaaattatc
    41941 gccaccatgt tggcagtgac ctggctgaat ccgcatgttt acctggatac ttttgttgta
    42001 ctgggcagcc ttggcgggca gcttgacgtc gaaccaaaac gttggtttgc gctcgggaca
    42061 attagcgcct ctttcctgtg gttctttggt ctggctattc tcgcagcctg gctggcaccg
    42121 cgcctgcgca cggcaaaatc acagcgcatt atcaatctgg tagtgggatg tgtcatgtgg
    42181 tttatagcct tgcagctggc gagagacggt attgctcatg cacaagcctt gttcagttag
    42241 gcgctatctg atggaaaaat aaaacagagg cgctaagctt gcctccagag gtcctgaatt
    42301 ttgggcaagt caattaacac ggagagacta acgtgaagtt caaagttatc gccctagcgg
    42361 cattaatggg tattagcggg atggcagcgc aggctaacga attgccggat ggaccgcata
    42421 ttgtcacctc cggtacggca agtgtggatg cggtgccaga cattgccact cttgcgattg
    42481 aagttaacgt ggccgcgaag gatgccgcta cagccaagaa acaggcagat gagcgcgtcg
    42541 cacaatacat ttccttcctt gaactcaatc agatcgcgaa aaaagatatc agctcagcga
    42601 atttacgcac ccagccagat tatgattatc aggatggtaa aagtatcctg aaaggctacc
    42661 gcgctgtgag aacggtggaa gtcacgctcc gtcagttaga caaactgaat tccttgctgg
    42721 atggcgcgct gaaggcgggt cttaacgaaa ttcgttcagt gtcgctgggc gtggcgcagc
    42781 cggatgccta taaagacaaa gcgcgtaagg cagcgattga taacgcgatt catcaggcgc
    42841 aggaactggc gaacggcttt catcgtaaac tggggccggt atatagcgtg cgctaccatg
    42901 tttccaacta tcagcccagc ccaatggtgc ggatgatgaa agccgatgcc gcgccggtgt
    42961 ctgcccagga aacttacgag caggccgcta ttcagtttga tgatcaggtc gatgtggtct
    43021 tccagttaga acctgtggat caacaacccg ctaaaacacc tgcagcacaa taatacttgt
    43081 agcccgacgt attcgtcggg ctaatgcctt tacccgatat tgcctccttt ttctgtaatt
    43141 ttctgtaaaa ccatgacgta atcacctatc tttgctcgcg gtttcatcaa ggataggctg
    43201 actgaaacgg ttaagcggac aaggatgcgg gg
//
LOCUS       DAJVUY010000010        42249 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.010, whole genome shotgun sequence.
ACCESSION   DAJVUY010000010 DAJVUY010000000
VERSION     DAJVUY010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 42249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42249
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.010"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            5..517
                     /locus_tag="OQQ72_000549"
     CDS             5..517
                     /locus_tag="OQQ72_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5384 family protein"
                     /protein_id="HCS2010394.1"
                     /translation="MASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQHDEWVAERNR
                     EIQQEKQRRANAQVAANKRAATAAANKKARQDKLDAEASADKKRDQSYEDELRSLEIQ
                     KQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGRDLMKSVGKA
                     EENKSDSWFN"
     gene            complement(612..2189)
                     /gene="guaA"
                     /locus_tag="OQQ72_000550"
     CDS             complement(612..2189)
                     /gene="guaA"
                     /locus_tag="OQQ72_000550"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HCS2010395.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(2258..3724)
                     /gene="guaB"
                     /locus_tag="OQQ72_000551"
     CDS             complement(2258..3724)
                     /gene="guaB"
                     /locus_tag="OQQ72_000551"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HCS2010396.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            3886..5256
                     /gene="xseA"
                     /locus_tag="OQQ72_000552"
     CDS             3886..5256
                     /gene="xseA"
                     /locus_tag="OQQ72_000552"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HCS2010397.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(5253..5468)
                     /locus_tag="OQQ72_000553"
     CDS             complement(5253..5468)
                     /locus_tag="OQQ72_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HCS2010398.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5537..7009)
                     /gene="der"
                     /locus_tag="OQQ72_000554"
     CDS             complement(5537..7009)
                     /gene="der"
                     /locus_tag="OQQ72_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCS2010399.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEVEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(7127..8305)
                     /gene="bamB"
                     /locus_tag="OQQ72_000555"
     CDS             complement(7127..8305)
                     /gene="bamB"
                     /locus_tag="OQQ72_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HCS2010400.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(8316..8936)
                     /gene="yfgM"
                     /locus_tag="OQQ72_000556"
     CDS             complement(8316..8936)
                     /gene="yfgM"
                     /locus_tag="OQQ72_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ancillary SecYEG translocon subunit YfgM"
                     /protein_id="HCS2010401.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(8954..10228)
                     /gene="hisS"
                     /locus_tag="OQQ72_000557"
     CDS             complement(8954..10228)
                     /gene="hisS"
                     /locus_tag="OQQ72_000557"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCS2010402.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(10339..11457)
                     /gene="ispG"
                     /locus_tag="OQQ72_000558"
                     /gene_synonym="gcpE"
     CDS             complement(10339..11457)
                     /gene="ispG"
                     /locus_tag="OQQ72_000558"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HCS2010403.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11484..12497)
                     /gene="rodZ"
                     /locus_tag="OQQ72_000559"
     CDS             complement(11484..12497)
                     /gene="rodZ"
                     /locus_tag="OQQ72_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HCS2010404.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLLGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATLAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(12782..13936)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ72_000560"
     CDS             complement(12782..13936)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ72_000560"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HCS2010405.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(14086..14517)
                     /gene="ndk"
                     /locus_tag="OQQ72_000561"
     CDS             complement(14086..14517)
                     /gene="ndk"
                     /locus_tag="OQQ72_000561"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCS2010406.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(14666..16978)
                     /gene="pbpC"
                     /locus_tag="OQQ72_000562"
     CDS             complement(14666..16978)
                     /gene="pbpC"
                     /locus_tag="OQQ72_000562"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HCS2010407.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGSKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLEWPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDCTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHYAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(16979..21940)
                     /gene="yfhM"
                     /locus_tag="OQQ72_000563"
     CDS             complement(16979..21940)
                     /gene="yfhM"
                     /locus_tag="OQQ72_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HCS2010408.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDQPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPANALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPSDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPLVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAAR
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGDEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            22140..22985
                     /gene="sseA"
                     /locus_tag="OQQ72_000564"
     CDS             22140..22985
                     /gene="sseA"
                     /locus_tag="OQQ72_000564"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HCS2010409.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIEALSDHTSPLPHMLPRPKTFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23478..24254)
                     /gene="sseB"
                     /locus_tag="OQQ72_000565"
     CDS             complement(23478..24254)
                     /gene="sseB"
                     /locus_tag="OQQ72_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HCS2010410.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(24396..25679)
                     /gene="pepB"
                     /locus_tag="OQQ72_000566"
     CDS             complement(24396..25679)
                     /gene="pepB"
                     /locus_tag="OQQ72_000566"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HCS2010411.1"
                     /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(25857..26057)
                     /gene="iscX"
                     /locus_tag="OQQ72_000567"
     CDS             complement(25857..26057)
                     /gene="iscX"
                     /locus_tag="OQQ72_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HCS2010412.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(26069..26404)
                     /gene="fdx"
                     /locus_tag="OQQ72_000568"
     CDS             complement(26069..26404)
                     /gene="fdx"
                     /locus_tag="OQQ72_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HCS2010413.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(26406..28256)
                     /gene="hscA"
                     /locus_tag="OQQ72_000569"
     CDS             complement(26406..28256)
                     /gene="hscA"
                     /locus_tag="OQQ72_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HCS2010414.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(28273..28788)
                     /gene="hscB"
                     /locus_tag="OQQ72_000570"
     CDS             complement(28273..28788)
                     /gene="hscB"
                     /locus_tag="OQQ72_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HCS2010415.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(28884..29207)
                     /gene="iscA"
                     /locus_tag="OQQ72_000571"
     CDS             complement(28884..29207)
                     /gene="iscA"
                     /locus_tag="OQQ72_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HCS2010416.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(29224..29610)
                     /gene="iscU"
                     /locus_tag="OQQ72_000572"
     CDS             complement(29224..29610)
                     /gene="iscU"
                     /locus_tag="OQQ72_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HCS2010417.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29638..30852)
                     /gene="iscS"
                     /locus_tag="OQQ72_000573"
     CDS             complement(29638..30852)
                     /gene="iscS"
                     /locus_tag="OQQ72_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCS2010418.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(30964..31452)
                     /gene="iscR"
                     /locus_tag="OQQ72_000574"
     CDS             complement(30964..31452)
                     /gene="iscR"
                     /locus_tag="OQQ72_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HCS2010419.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(31722..32462)
                     /gene="trmJ"
                     /locus_tag="OQQ72_000575"
     CDS             complement(31722..32462)
                     /gene="trmJ"
                     /locus_tag="OQQ72_000575"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HCS2010420.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32581..33384
                     /gene="suhB"
                     /locus_tag="OQQ72_000576"
     CDS             32581..33384
                     /gene="suhB"
                     /locus_tag="OQQ72_000576"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HCS2010421.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33529..34383
                     /locus_tag="OQQ72_000577"
     CDS             33529..34383
                     /locus_tag="OQQ72_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS2010422.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34574..35854
                     /gene="csiE"
                     /locus_tag="OQQ72_000578"
     CDS             34574..35854
                     /gene="csiE"
                     /locus_tag="OQQ72_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HCS2010423.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFAKLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
                     YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(35846..36985)
                     /locus_tag="OQQ72_000579"
     CDS             complement(35846..36985)
                     /locus_tag="OQQ72_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HCS2010424.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGAFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(37145..38035)
                     /gene="hcaR"
                     /locus_tag="OQQ72_000580"
     CDS             complement(37145..38035)
                     /gene="hcaR"
                     /locus_tag="OQQ72_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HcaR"
                     /protein_id="HCS2010425.1"
                     /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG
                     VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKTVQEDRQLTIGFVPSAEV
                     NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF
                     DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGSLAPIVKAWFAQENSQPNI
                     VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM
                     KPALRDFIAIVQERLASVTA"
     gene            38171..39532
                     /locus_tag="OQQ72_000581"
     CDS             38171..39532
                     /locus_tag="OQQ72_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HCS2010426.1"
                     /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL
                     FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRA
                     FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA
                     PGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKSPAEQFASDQYHALFSH
                     ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV
                     DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE
                     VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL
                     CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE
                     VMK"
     gene            39529..40047
                     /locus_tag="OQQ72_000582"
     CDS             39529..40047
                     /locus_tag="OQQ72_000582"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate/cinnamic acid dioxygenase
                     subunit beta"
                     /protein_id="HCS2010427.1"
                     /translation="MSAQVSLELHLRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM
                     RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC
                     QISETDIPNVFAVRVNYLLYQAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ
                     AVITSHNLSVLF"
     gene            40047..40367
                     /locus_tag="OQQ72_000583"
     CDS             40047..40367
                     /locus_tag="OQQ72_000583"
                     /EC_number="1.14.12.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-phenylpropionate/cinnamic acid
                     dioxygenase ferredoxin subunit"
                     /protein_id="HCS2010428.1"
                     /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH
                     GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGSDIFIDLP
                     EAQP"
     gene            40364..41176
                     /gene="hcaB"
                     /locus_tag="OQQ72_000584"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
     CDS             40364..41176
                     /gene="hcaB"
                     /locus_tag="OQQ72_000584"
                     /gene_synonym="phdD"
                     /gene_synonym="yfhX"
                     /EC_number="1.3.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate-dihydrodiol/cinnamic
                     acid-dihydrodiol dehydrogenase"
                     /protein_id="HCS2010429.1"
                     /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA
                     SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA
                     ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASK
                     HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL
                     PLQFFPQPADFTGPYVMLASRRNNRALSGVMINADAGLAIRGIRHVAAGLDL"
     gene            41186..42198
                     /locus_tag="OQQ72_000585"
                     /pseudo
     CDS             41186..42198
                     /locus_tag="OQQ72_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylpropionate dioxygenase ferredoxin
                     reductase subunit"
BASE COUNT         9980 a        11690 c        10609 g         9970 t
ORIGIN      
        1 catcttggcc tccttaagct atccggctat cgcctcatca ttgcaggatc aactctctgc
       61 tgtagcagaa gcggaacagc aaggtaaaaa tgaagagcaa aggcagcatg acgaatgggt
      121 cgcggagcgc aacagggaaa tccagcaaga gaagcaacgt cgcgcaaatg cccaggtcgc
      181 cgctaacaaa agagcggcaa cggcagcagc aaataagaaa gctcgtcagg ataaactgga
      241 cgccgaagcc tctgcggaca aaaaacgcga tcaaagttat gaagatgagc tacgcagctt
      301 agagattcag aaacaaaaac tggcgctggc aaaagaagaa gcccgcgtta agcgagaaaa
      361 cgaatttatc gatcaggaac tgaagcacaa agctgcgcaa accgatgtgg tgcaatctga
      421 agctgacgcc aacagaaata tgactgaagg cggtcgcgat ctgatgaaaa gcgtgggcaa
      481 agcagaagag aacaaatcgg acagctggtt taattaatcg atgttagtaa cttcaagcct
      541 atgattcttg aagataaaaa accctctgta gtaacagagg gttttgttca ttcatagtgc
      601 agggattaaa atcattccca ctcaatggta gctggcggct tgccgctgat gtcatacacc
      661 acgcgggaaa taccgttcac ttcattgata atgcggttgg aaacgcgacc gaggaaatcg
      721 tacggcagat gcgcccagtg tgcggtcata aagtcgatgg tttcgacagc acgcagagag
      781 acaacccagt catacttacg accatcgccc attacgccaa cggaacgtac cggcaggaac
      841 acagtgaacg cctggctgac tttgttgtac aggtccgctt tacgcagttc ttcaatgaag
      901 atggcgtcag cacggcgcag caggtcacag tactctttct tcacttcacc cagcacacga
      961 acgccaaggc ctggtcccgg gaacgggtga cggtacagca tgtcgtacgg caggcccagc
     1021 tccagaccaa tcttacgcac ttcgtctttg aacagctctt tcagcggttc aaccaggccc
     1081 atcttcatct ctttcggcag gccgcccacg ttgtggtgag atttgatgac gtgtgcttta
     1141 ccggttgcag aagccgcaga ttcgataacg tcagggtaga tggtgccctg cgccagccac
     1201 ttcacgtctt ccagtttcag cgcttcttca tcgaacactt caacgaaaac gcgcccgatg
     1261 attttacgtt ttgcttccgg atcgttttcg ccagccagcg ctgacaggaa gcgatcttct
     1321 gccggtacgt gaacaatgtt cagaccaaag tgatcgccaa acatatccag aacctgctct
     1381 gcttcgttga gacgcagcag gccgttgtcg acgaatacgc aagtcagatt tttaccgata
     1441 gcgcggtgca gcagcattgc ggttacggag gaatccacac caccagagag gccgaggatg
     1501 actttatcgt cgcctacctg ctcgcggatg cgagctacag catcgtcgat aattttcgct
     1561 ggcgtccaca gggcttcaca ctggcagata tcacgcacaa aacgctccag catgtgcata
     1621 ccctggcggg tgtgagtcac ttccgggtgg aactgtacgc catagaagcg tttttcttcg
     1681 ttagccataa tggcaaacgg gcagctttcg gtgctggcta cggtgacgaa gtcggacggg
     1741 atagcggtaa ctttatcgcc gtggctcatc cagacatcga gcagcggttt accgtctgcg
     1801 gtcagcgcat cttcgatacc gcgaaccagt gcgctgtcgt ttacgacttc aacctgcgcg
     1861 tagccaaatt cacgttcgtt agaggcttca acgtgaccgc ccaactgcat tgccatggtc
     1921 tgcatgccat agcaaacgcc gaataccggt acgcctgctt caaagacata ctgcggcgca
     1981 cgcggactgt tttcttcagt agtactttcc gggccgccgg aaagaataat gccgcttgga
     2041 ttgaagtcac gaatttgtgc ttctgtcaca tcccacgccc acagttcgca gtaaacaccc
     2101 agctcacgca cgcggcgcgc aaccagttga gtgtactgag aaccgaagtc cagaatgagg
     2161 atgcgatgct tatgaatgtt ttccgtcatt gacgcttatt ccgaggcaag tgaaacagat
     2221 aatataaatc gcccgacatg aagtcgggcg aagagaatca ggagcccaga cggtagttcg
     2281 gggactcttt agtaatggtc acgtcgtgaa cgtggctttc ctgaatgccc gcaccgctga
     2341 tacgtacaaa ctccgcttta gtacgcagtt cgtcgatagt accacagccg gtcaggccca
     2401 tacaggagcg caggccgccc atctgctggt gaatgatctc tttcaggcga cctttatagg
     2461 ctacgcgacc ttcgatacct tccggcacta gtttgtcggc agcgttgtca ctctggaagt
     2521 aacggtcaga agaacctttg gacatcgcac ccagagagcc cataccacgg taagatttgt
     2581 aagaacggcc ctggtagagt tcaatttcac ccggagattc ttcagtaccc gccagcatgg
     2641 aacccaccat taccgcgctt gcgccagcgg cgatagcttt ggcgatgtcg ccggagaagc
     2701 gaataccacc atctgcgata accggaatac ctgtgccttc cagcgcttca actgcgtcag
     2761 caacggcagt gatctgcgga acacctacgc cagtaacgat acgagtcgta cagatagaac
     2821 cagggccgat accgacttta accgcgctgc aaccagcttc tgccaaagcg cgtgcacctg
     2881 cagctgttgc cacgttgccg ccgatgattt gcagatccgg atatttagca cgggtttcac
     2941 ggatacgctg caaaacgcct tctgagtggc cgtgggagga gtcgatcagc agaacgtcaa
     3001 cgccagcggc aaccagcgcg tcaacacgct cttcgttacc cgcacctgcg ccaactgcag
     3061 caccaacacg cagacggcct tgctcgtctt tacaggcgtt cggtttacgt tccgctttct
     3121 ggaagtcttt cacggtgatc atgccgatca ggtggaattc gtcatcaacc accagcgctt
     3181 tttcaacgcg tttttcgtgc atttttgcca gcaccacttc acgggcttca ccttcacgca
     3241 cggtgaccag acgctctttc ggcgtcatgt aaacgctaac cggctggttc aggtcggtaa
     3301 caaaacgcac gtcacgaccg gtgataatac ccaccagttc gttttcttcg gtaacaaccg
     3361 gatagcccgc aaaaccgtta cgctcggtca gttctttcac ttcgcgcagc gtcgtggttg
     3421 gcagaacagt ctgcggatca gtcaccacac cagattcgtg ttttttcaca cggcgaactt
     3481 cttctgcctg gcgttcaatg gacatgtttt tgtggataaa gccgataccg ccttcctgag
     3541 ccagagcaat agccaggcgc gcttccgtta cggtatccat tgctgcggaa agcataggga
     3601 tattcagacg aatagttttc gtcagctggg tgctgaggtc agcagtattc ggcagaacgg
     3661 tagaatgagc aggaacgagg agaacgtcgt caaacgtcag agcttcttta gcgatacgta
     3721 gcatgggcaa tatctcgacc agagtggtta ataaatattg ccgcggcatt atacagagcg
     3781 taaccgattg catctacccc tttttgcaaa aaatgcttgc tatccccgaa gggcgggtta
     3841 ctatcgactg aataacctgc tgatttagaa tttgatctcg ctcacatgtt accttctcaa
     3901 tcccctgcaa tttttaccgt tagtcgcctg aatcaaacgg ttcgtctgct gcttgagcat
     3961 gagatgggac aggtttggat cagcggcgaa atctctaatt tcacacaacc ggcttccggt
     4021 cactggtact ttacactcaa agacgacacc gcccaggtac gctgcgcgat gttccgcaac
     4081 agcaaccgcc gggtgacctt ccgtccacag catggacaac aagttttagt tcgcgccaat
     4141 attacgctct acgagccgcg cggtgactac cagataatcg ttgagagtat gcagccggcc
     4201 ggtgaagggc tgctgcaaca gaagtacgaa cagctcaaag cgaagttgca ggctgaaggt
     4261 ttgttcgatc agcaatacaa aaaaccactt ccctcccctg cgcattgcgt tggtgtgatc
     4321 acctcaaaaa ccggtgctgc gctacatgat attttgcatg tgttaaaacg tcgcgatcct
     4381 tctctaccgg tgatcatcta ccccaccgcc gttcagggcg atgacgcacc ggggcaaatt
     4441 gttcgcgcca ttgaactggc gaatcagcgc aatgagtgcg acgtgttgat cgttgggcgc
     4501 ggcggcggtt cgctggaaga tttatggagt tttaacgacg aacgcgtagc gcgggcgatt
     4561 tttgccagcc gcattccggt cgtcagcgcc gtcgggcatg agacggatgt gaccattgcc
     4621 gattttgttg ccgatctgcg tgcgccaacg ccgtctgccg ccgctgaagt agtgagccgt
     4681 aatcagcaag agttactgcg ccaggtgcaa tcgacccgtc aacggctgga gatggcgatg
     4741 gattattatc tcgccaaccg cacgcgtcgc tttacgcaga tccatcaccg attacagcaa
     4801 cagcatccgc agctccggct ggcacgccag caaaccatgc ttgagcgcct gcaaaagcgg
     4861 atgagctttg cgctggaaaa tcaacttaag cgtaccgggc aacagcagca gcggttaaca
     4921 cagcggctga atcagcaaaa tccacagccg aagattcatc gcgcgcaaac gcgcattcag
     4981 caactggaat atcgtttagc agaaaccctg cgcgtacagc ttagcgccac gcgtgaacgt
     5041 ttcggtaatg cagtaacgca cctcgaagcc gtaagcccac tgtcaacgct ggcgcgtgga
     5101 tacagcgtta ctactgctac tgacggcaat gtactgaaaa aagtgaagca agttaaagcg
     5161 ggtgaaatgc taaccacacg tctggaagac ggctggatag aaagtgaagt taaaaacatc
     5221 cagccagtaa aaaaatcgcg taaaaaggtg cattaagcca gcacgaattc aacgcgtttt
     5281 ttcgatatca agccatgccc gtgctgacag aagtaatcta ctgcaccgca ggcttttaac
     5341 acctgcaacg gttgatggca gtctggacaa agagctttca tttcaataat ttccccgcag
     5401 gatgggcaac gcgcatggcc gttatcctga tcaagcacat gctgacattg tggacaatgc
     5461 agttccatat gaattcctcc ggtagccatc cctctacatt catagaggga atggcagata
     5521 aaatacttac ggataattat ttatttttct tgatgtgctt catcagacgc ttacgtttac
     5581 gcatctgggt tggcgtcagg gtgttacgct tgttcgcata cgggttttcc ccttctttga
     5641 actgaatacg aatcggcgat cccattacgt ccagcgattt gcggaagtag ttcatcaagt
     5701 agcgcttgta ggaatcaggc aggtctttca cctgattacc gtgaatcacc acaatcggcg
     5761 ggttataacc accagcgtgg gcatatttca gcttcacacg acgaccgcgt accagcggcg
     5821 gttggtgatc ttcaacagcc atcgtcatga tgcgcgtcag catagaggtc cccacacgac
     5881 gggtggagct gtcatacgct tcacgtactg attcaaacaa gttaccaaca ccactgccgt
     5941 gcaaggcaga gataaagtgc acacgagcaa aatcgataaa gcccagacgg aagtccagcg
     6001 tttctttcac ctgctctttc acttcctggc tcaggccatc ccacttattc accacaatga
     6061 caagtgagcg cccactattg agaataaagc ccagcagcga gagatcctga tcggaaatac
     6121 cttcgcgcgc atcaatcact aacatcacca cgttggcatc ttcaatggcc tgcaacgttt
     6181 tgattacgga gaatttctct acagcatcgg tgattttgcc gcgtttacgt acgccagcgg
     6241 tgtcaatgag cacatactca cgtccatcgc gttccattgg aatgtagata ctgtcacgcg
     6301 tcgtgccagg catgtcataa acaacaacgc gctcttcacc aagaatacgg ttagtgagtg
     6361 tagacttacc tacgttcgga cgacccacaa tcgccagttt gatcggcaga ctttgcgggt
     6421 cgaagtcgtc ttcctcttct tcttcgccgt tctcttccac ttcaaattgc gcccagtatt
     6481 cagcgtcttc gtcgacttcc tcttgcggtg cgagatcttc catccacggc agcagcacat
     6541 gctccagcag acttaatacg ccacgaccgt gagacgcggc gatcgggtag atttcaccta
     6601 agccaagcga gtagaaatca accactgcct gatcgggatc cagaccgtca gttttgtttg
     6661 ccaccaggaa ggtcggtttt tcacgggagc gcagatgttt ggcaatcgct tcatctgccg
     6721 gcatcaggcc cgcgcgcgca tccaccataa acagtacgac gtccgcttct tcaatcgcca
     6781 gcagcgactg ttccgccatg cgggtttcta caccgtcttc tgtgccatca atcccgccgg
     6841 tatcaataca gataaactca cggccttcaa tttccgcacg accgtactta cggtcacgag
     6901 tcagacccgg gaaatccgca accagcgcat ctcgggtgcg agttagacgg ttaaataacg
     6961 tggattttcc tacgttaggg cgcccgacaa gcgcgaccac aggtaccatg tttaaagcct
     7021 catttttata aatcatcaga caacgcacgc tatattcgcg tcgttgttaa aaacaggaaa
     7081 acggcccctg tccaggagcc gttttcaaag tgaacgacag agacgattaa cgtgtaatag
     7141 agtacacggt tccgtctttt gcctggatca gcagtttgcc gtcagcggca accggttcag
     7201 tctggaaacc ggaactatca actttttgct gggcaacgaa acgaccatct tcgacattaa
     7261 tccagtgcag ataaccttca ctgtcaccga ccaccaggtt gccatcatac agcaccggag
     7321 aagtcagcag gcgatgcaac agatcgcttt gtgtccacag cgtaacgccg ccatcaatgg
     7381 tcaacgccat cacccggtca ttttgatcga ccagatagat gcgattgccg tcgacgatga
     7441 aatcattcac cgaacccagt tcgcgtttcc acataatctg accactgcgc agatcaagcg
     7501 ccgtcaggtt accattatag gccagcgcga aaacaacgcc gttaacaacg acgggagtcg
     7561 tgtcaacatc gctcagacgg tcaatttcgg tagaaccggt cgcctgggaa atacgctgct
     7621 gccaaatcat ctggccctgt tccatcagca ctgcgctgac gcgaccatta tcgcccccca
     7681 cgacggccgc accaaaagcc gttgccggcg cagactcgcc acgcaaagag agcgaaggca
     7741 tatcgaggtt aactgtccat ttgacagcgc cgtcagcttc gttcagcgct tgtaactgac
     7801 cgttactggt gtggattaac accagaccgt cgctgaccac cgggcgcgaa agtgcttcac
     7861 ccgcgacttt agtttgccat gccacagtac catcgctggt attcagcgcg taaacctgcg
     7921 ccttttcgct gccaatgtag acatgcccac cagacacggt cacaccgcca gaaagtaatg
     7981 caggctcttt agagaaccag ccatctttct cggccaggct gacagaccag atttctttgc
     8041 catcatccgc attcagcgct tttaccaaac cagcgcggtc cgctgcatag acaacgttgt
     8101 ccgccagtgc cggatgaaga ttggaataga agttgccaat gccgctacca acggaagtac
     8161 tccacgccgt ggtcggcgta aactggtttt caacggttgg caatggggac atctttacca
     8221 catcttcttc gctgttaaac agcgaacagc cgcttaaaag ggtaacggaa agcagtcctg
     8281 gcagcagtaa tttacgcaat tgcatcgggt ccctctcaga tggacaaatt attaattttc
     8341 atctgcatca tttcgctcag tgccggagta acatcgcttt tcacgcctgc ttcccatgca
     8401 ctacgcgcac cttgcttatc acctttgctc agcaatgctt caccacgcag gtcggcaaca
     8461 atggcagccc acccttcacc tttgatggta tcaagggttt tcagcgcggc atcagcctgc
     8521 ttgagctgta cctgaacgcg agcaagacgc agatttatca cggctttgag attttcatcg
     8581 ctcgtgtctg ccagcccctg ttgtaactgg gcggcagctt tctctagttc atttttgtca
     8641 acaaattgct gcgcaagttc caaagaagcc agcgcaccat aagtattttt attttcagca
     8701 gcaaattttt ccgccgccgg gatgctatcc ggtttgcctt cgctcactgc ggtaaccgca
     8761 ttttgatagg caagagaagc ggagcgtgca gaatcaacct gatggctgtt ccagtagcgc
     8821 cagccaatca gtgcgccaac gcccaaaatc accccaacag ccagtgcttt gccattttca
     8881 gcaaaaaagc gtttaaccgc ttctacctgg tcgttttcgt tctcgtaaat ttccacgctg
     8941 tccttctcct tccttaaccc agtaacgtgc gcaaatgcgc ggctacgcta tcctgcgcaa
     9001 ctgccgtttg ctcaccagag cgcaaatcct tcactactgc tgtgccgtta gtcacttcag
     9061 actcacccag caccacagca acgcgggcac cccatttatc agcacgggca aactgtttct
     9121 taaagttgcc gccgccgtgg ttggtcatca atttcacgcc ctgtaattca tcacgcagac
     9181 gctcagctaa tgccatagcc gcagattgtg tatcagcacc tgaagccacc aggtatatat
     9241 cgacaatagg atcggcttta aattccggat taacggcctg tactaacaat acaagacgtt
     9301 cgaggcccat cgcaaaaccg acagccggtg ttgcacgacc gcccagttgt tccacaagac
     9361 cgtcataacg accgcctgca cacacggtgc cctgggagcc gagactgtta gtcacccact
     9421 cgaaaacggt acggttatag taatccagac cacgcaccag acgctggttt acggtgtaag
     9481 cgatccccgc gctctcaagc agtttgcaca gaccggcaaa atgctcacga gattcctcgt
     9541 ccagataatc acctaatgcc ggagcgtcgt tgagaagcgc ctgcacttcc ggattttttg
     9601 aatccagcac gcgcagcggg ttagtgtaca tgcggcgttt gcagtcttcg tccagctttt
     9661 ctttatgctg ctcaaggaat gccaccagcg catcgcggta attggcgcgt gcttccagcg
     9721 aaccgataga attcagctca agagttacgt gttcggaaat acccagcgcg cgccaccagc
     9781 gggcggtgag cataatcagt tcagcgtcga tatccggacc ttgcagaccg aaaacttcgc
     9841 agcccaactg atggaactga cgataacgcc ctttctgcgg acgctcgtga cggaacatcg
     9901 gcccgatata ccacagacgc tgttcctgat tgtacagaag accatgctcg atgccggcgc
     9961 gtacacagcc cgccgtccct tcagggcgca gagtcaggct gtcgccattg agatcctcaa
    10021 aggtgtacat ctctttttca accacgtcgg tgacttcacc aatcgcacgt ttgaatagcg
    10081 gggtctgctc tacaatcggc aagcggattt cactgtaacc gtagctgccg agcacgtttt
    10141 tcagtgtgcc ttcaatgcgc tgccagatgg ccgtttcgcc aggcaggtaa tcgttcatgc
    10201 cgcgaatggc ttgaatgttt tttgccacgt ttattctctt tctgaatata aaaatgaacc
    10261 ctcaacgctt ccctcaatgt ttggggagcc atgcgggttc aatcatacac gggaagcgag
    10321 gcgcttccca tcacgttatt atttttcaac ctgctgaacg tcaattcgac gcgcttcatc
    10381 cagctgactg gctttcgcac gaatgcgtgc ttccagctgg tcgatcatat cgttgttgtc
    10441 cagacggtct ttgcgcacgc catcttcata gaggccgctt ttcttgttgc cgccggtgac
    10501 gccgagtgta gaaaccagcg cctcacctgg gccattcacc acgcagccga taatagaaac
    10561 gtccatcgga gtgatgatat cttccaggcg ttgctccagc gcgttaaccg taccgataac
    10621 atcaaattcc tgacgcgaac aggtcgggca ggcgatgaag ttgatccctc gcgaacggat
    10681 acgcagcgat ttcaaaatat cgaaaccgac tttgatctct tcgaccggat cggccgccag
    10741 cgatacgcgc agcgtgtcgc cgatgccttc agacagcagc agacctaaac caatggcgga
    10801 ttttactgcc ccgctgcgtg caccaccggc ttcggtgatc cccagatgca gcggctgatc
    10861 gatctgtttt gccagcaaac gataagactc aacagcgagg aagacgtcag acgctttcac
    10921 gctgactttg aactgatcga agttcaggcg atcgagatga tcaacatgac gcatggcgga
    10981 ttccagcaac gcctgcggcg tcggttcgcc atacttttct tgcagatctt tttccagcga
    11041 tccggcgtta acgccaatac ggatcggaat gtttttatcg cgcgcacagt caaccaccat
    11101 gcgaatacgc tcttcattac cgatattgcc agggttaata cgcagacaat cgacgccgta
    11161 ttccgctact ttcagcgcaa tgcgatagtc gaagtggatg tcagccacca gcggcacgtt
    11221 aacccgctgt ttgatgagtt tgaacgcttc tgccgcgtcc atcgtcggta cggagacacg
    11281 gacgatatca gcgccaacgc gttccagcgc cttgatttga ttgaccgttg cttcgacatc
    11341 tgtcgtacgc gtattggtca tggactgtac ggcgatggga gcaccatcgc caatcggcac
    11401 attcccaacg taaatacgtg ttgattttct acgttgaatt ggagcctggt tatgcatgaa
    11461 aaatctcccg cgttacccgt ctgttactgc gccggtgatt gttcggcatt gagggtcaga
    11521 cgcgcaacct ggttagttct gataaaacga ctcagatcga caggtttccc ttgatactgg
    11581 atctgtactg cggctggcgc accaattttc agtttgtacg gtgcctggcc ggttaagttc
    11641 aaattaccgt ctttacgctg cataccgcta aacaattttt taccggtagc atcagtgacc
    11701 tccagccagc aatcggcagt aaagttcatc accagcgcat tcggatcagc caccggcgtg
    11761 gtcacgccag cctgatcggt tggcaacggc gcagcaccat ctggcgttgt tgctgccgtt
    11821 ggtgccaggg tcgcggcggt atcaacattt gcctgcgaag gcgaaacaac cgcattctgt
    11881 tgcggatcaa cagctggtgc tggcgcagtt acggcaggtg tttgcgtgtt ggttgcggta
    11941 gtatccacag acgctggcgg cgtggacgtt gtagccgggt ctgtagttgt cgacgtattt
    12001 aacggaacac tctgcccctg ctcgctatta ctgctcagtt ccgccgaaga ttgatcggcc
    12061 atagtggtga tctcttcctg ctgagctttg tggtcttgcc accaccaggc accgctcagg
    12121 ccgataacca caaacaacac cagccaggtg aaggtcatca gccagccgtc acgttttttg
    12181 cggcgtttac cgagggaaaa actctgcatc ggcgcaactt tcgcagcccg tagtggagcc
    12241 tgcttttcca gccctagcag cagttcttct tctggaatat gtaccagacg cgcataagag
    12301 cggatatatc cgcgcaggaa tgttgaagca agatcggcgg gtgccttatc ttcttcaatg
    12361 tcgcgtaccg tggaaacctt caggcaaagt cgctcggcaa cggcctgctg actaagtcct
    12421 agttgttcgc gagcattacg caggcgagcg ccggtagtaa gtgcttcatt ttggtcgtgc
    12481 gtggcttcag tattcattcg ctgcaggtac gtttaaatga gaattgagat gccggtgaac
    12541 catcatgctc acccacaccg cgaaacatcc gttaagttaa ccgttatcat acagtataag
    12601 accgtctgtg tgctcgtgac aaagcccaca ttcactaagg ctaacttact gttgcatcgt
    12661 tacatactgc cttaaagtca gcaaaaacgc accgttaata ttgaccagac aattgcaact
    12721 taatacttca ttcataaaag attacgccac ggtacataaa gtaaccgtgg cgtaatggct
    12781 atcagaccgc tttaatgtcg atggcttcac cctgcatccg tttacgcagg gtacgtttcg
    12841 tacggtcgat aacatcgccc gccaactgac cacaggcagc atcgatatca tcaccacgag
    12901 ttttacgcac aatagtggtg aaaccgtagc tcatcagcac ttttgagaaa cggtcgatac
    12961 ggctgttcga actgcgtcca tacggcgcgc ccgggaacgg gttccacggg atcaggttga
    13021 tcttacacgg cgtatctttc agcagctccg ccagttggtg cgcgtgttca gtgccgtcgt
    13081 taacgtggtc aagcatcacg tattcaatag tgactcggcc ctgattggcg ttggatttct
    13141 ccagataacg gcgcaccgca gcaaggaacg tttcgatatt gtactttttg ttgatcggca
    13201 caatttcgtc acgaatttcg tcgttcggcg cgtgcaggga aattgccagt gcaacgtcga
    13261 tcatatcgcc cagtttatcc agcgccggaa ctacaccgga agtagaaagc gtgacgcgac
    13321 gtttagacag gccaaaaccg aaatcatcca gcatgatttc catcgccgga acgacgttgt
    13381 tcaggttgag cagcggctcg cccatgccca tcatcactac gttagtgatt gggcgctgac
    13441 cggtgacttt tgctgcgccg acgattttcg ccgcacgcca cacctggccg ataatttccg
    13501 acacccgcag gttgcgatta aagccctgct gggcggtgga acagaattta cactccagcg
    13561 cacaccccac ctgcgaagag acgcagagcg tggcacggtc gtcttccggg atatacaccg
    13621 tttcgacgcg ctgatcgcca acggcgatcg cccatttaat ggtgccgtcg gatgaacgct
    13681 gttcttcaac cacttccggt gcgcggattt ccgccacctc tttcagtttg ccgcgcaaca
    13741 ctttgttgat gtcggtcatc tcatcaaagt tgtcgcagca atagtgatac atccacttca
    13801 tcacctgatc ggcgcggaag ggtttttcac ctaaatcttt aaaaaactcc cgcatctgct
    13861 gacggttgag atccagcagg ttgatttttc catctttcgt ggtgacgttt tcaggtgtga
    13921 ctaattgttc agacatatgc tattccggcc tcgttattac acgttatggc ccctggaggg
    13981 ttgaaaaaag aaacgccccg gtgagcggct gctcgtccgg gggcgctgca ttgtacaaat
    14041 tctggcgcac ggatgccacg tttgcacgcg gcatttacga aattattaac gggtgcgcgg
    14101 gcacacttcg ccttcgccaa agaaataagc gatttcgcga gcggcagatt cgacggaatc
    14161 agaaccgtgg gtaccgtttt cggtcaggct gtcagcgtaa tcagcgcgca gagtaccagc
    14221 cagtgcgttt gccggattgg tcgcgcccag cagatcgcgg tgacgctgaa cggcgttttc
    14281 accttccagc acggaaacca cgatcgggcc agaggtcatg aattcaacca gaccatcaaa
    14341 gaacggtttt ccatcgtgtt cagcataaaa gccacgtgcc tgttcaacgg tcaggtgcag
    14401 cattttggtg ccgacaattt tgaaccctgc agcttcaaag cgcgcaaaga tattaccaat
    14461 gacgtttttt gctaccgcgt tcggtttgat gatggaaaaa gtacgttcaa tagccatttt
    14521 tacctctgta aattgttctg ttgttgtctg taccagcgta cgagatggcg cggattataa
    14581 tgagcaacag ggccgttgac tattgatgaa ggtaacattt ttttaaaata aaatgagttt
    14641 tagcaacaat cagggacaaa acagactatt gcatgacaaa tttcactgtc gcgatttgcc
    14701 ccacgtcatc catcaccagc aattgataat cacctttatc cgtcaaatgc agggtcacgt
    14761 tgcgcccgcg ttcagttaac ggttcgccat tcagaaacca ccagcgttca cctgcccctc
    14821 cacttgattg caacggcaaa gtcgcttccg ctgcgcccgg taaacgttta ataatcgcgc
    14881 catcgcgaac gcctgtcagc tgcagcggga gctgggcata gtgaccgtat ggcgggcaac
    14941 ttgtcgaggc cggtggtaag cgcacagcgc gacgttctga tgcgggcagc cagggttcca
    15001 gcggtagcgg ccagacattt atcatttctt gtcgcgcttg cgggcaatca gcggcaacac
    15061 gtttgccatt ttcatccagc cagatgggga aacgaatgcc attaatgcct tcctgctccg
    15121 gcagtaatag agttggcggc tgactcccgt ccagcagcca ggttgccagg cggcggcgac
    15181 agttaccgtc accttccggc aaagactgtc cgcccggcca gcagataacg ccacgagtga
    15241 ctgagttcgg gcgcgggtct tccggcagat tcgcactgcg cgacagtaag atattattga
    15301 cctgattcaa caatggtacg gcactggcaa agccaaactg accaacaacg ggcgtgcagt
    15361 ccggtctgcc agtccagatc ccaatgacat agcgagcgtt aaccccaatc gcccaggcgt
    15421 cacgatagcc atagctggtg cccgttttcc atgccagtgg ggcgacgcgc ggcaaggcac
    15481 tatccggcaa gggttgcgct tcatcagcca taatccggcg aatgatccac gccgcccccg
    15541 acgacattaa aggccattca agcagcggat cgtcaggctg taagcgcaat ttgcctgcct
    15601 tgccgtggcg agcaaacgcg gtatacgctg ccgccatatc ttccagtttt gcaccagcgc
    15661 cgccgagaat gagtgaaaga ttcggcgcag caccgttggg caaatataac ggcaatccaa
    15721 cattgcgtaa ctttgccgca aaccgtttcg gtccataggc ttccagcacc tgcacagcag
    15781 gtaagttcag cgagcgcacc agcgcctcgc tcatgctgat cgggccatga aaaccgctat
    15841 caaagttacc tggtcgataa tcaccggtgc gccgggggac gtcttgcagc agtgatgccg
    15901 ggtggatcaa gccttcatcc agcgccagac cataaacaaa cggtttgagc accgatcctg
    15961 gcgatcggat cgcattgacc atatcaacat gaccaaagcg tgaatcatcg ttgagatcaa
    16021 ccgatcccac ccagccgcga acacgcatat cggtatgatc aaccacgatc atcgccagtg
    16081 agctgcgcgg tggcaaccgc cctttccagt tttgcgccag ttcttccaga cgtcgttgaa
    16141 gaccggcatc cagcgtagta acgattttgt cgcttttgct tttaccgagc atcatgcgcg
    16201 aaaacagcgg tgccagttgc ggcatttgtc ggggtgccag ccagatgggt tcttcccttg
    16261 actcttttac ctgctcacgg gaccacacac cttgcacggc catccgttcg agcactttat
    16321 tacgcgcggc ttcggcacgc tccggccaac gatccgggcg cagtcggctg ggcgcttgcg
    16381 gtaacaccgc cagcattgcc gcctcggaat agcttaaatt cgcaggcgat tttccgagat
    16441 aagcccaact tgccgcaccg atcccctgca acgtaccgcc aaacggagcg cggttaagat
    16501 acaagatcag aatttcacgc ttagacaaat gccactccag ttgcaacgcg cgccagagct
    16561 ggagaatttt gctaccaaat gttttggggt gaggatcaag cagacgagca acctgcatag
    16621 tgagcgtgct gccaccagaa ataacccgtc ccgaagtgag atcttgccat gctgcgcgcg
    16681 ccaccgagaa tggattcacc cccggatgct tccagaacca gcgatcttca taattgatca
    16741 gcgcttcaag gtaacgtgga gacacatctt cgattgttac cggataacgc cagatgccat
    16801 cagcatcggc gaagcgccag agcggcgtac catcctgcgc cacgaccact cgtgcgggat
    16861 tgacttcatg cagcggtaga ggccagagtt tatctgctcc ccacgctgca agaaaaagga
    16921 gaaatggcac agctgccagc gttatccagc agccgcgttt ggttaacaag cgaagcattt
    16981 acggtcggac aatcagcaga tcttcagccg cgccggtcgc ccgccattgg ggaacataca
    17041 ttgattccac catcggttgc ggtacctgat acgttcccgg cgtcaccgcc cgcgccagat
    17101 acaccagcgt taccggttgg tattcatcaa cggcaaccgc cgccacaaag cgatcgtcac
    17161 ggaactcaat gtgcttaatg ctcgcctgct gcatctggtt cagtaagttt tgcacttcgt
    17221 caccactttg ctccaggctg gcgctaccgt tcgccagatt ctgattttcc agttccagac
    17281 ccgcaggcag cagatccacg actaacgcat ccggcacgct gttactggct tttacctgca
    17341 accagaccag caccagatcg ccgctacgta acgagtccag cgatttgctc ttaccatcag
    17401 taccaagaat atgacgctcg atttgcagca cattgttcgc cggtaaaggt gcggattgcg
    17461 gataaccgct ggcatccata cgcaaccata acggctgatc gccactgttt ctcacctgca
    17521 aggtggcaag ttgatcgcta ttcagattgc tgtttagcgt tttctcgcct gtcagcggct
    17581 cagctgagaa agaggtttgc gcctgccatt tacccggtaa atcctgaatc gtacgggcag
    17641 ccaggaacaa cgcgttactt tcctgcgtcg atagccagcg ttcaccaaac gcctgctgcg
    17701 aaagtgtgtt cagcaaagtg tactgctcat cgggtagcag tttattttct tccagcaagg
    17761 agagcattaa cgcgttgtcg cgcagtggac taccgtaatc acccagccat atccgctcat
    17821 cactatttct cggcgttttc agcgccagca caatcgcttc ttcaccacgc gttgcatcac
    17881 ccatggtttt cagcgcaatg ccaagttgca gcagcggtaa accagaagcg gcatctgcac
    17941 gatgctccca gatttcacgc agcgcaccca gtggtgcttt ttgctgacgg gccagcacca
    18001 gcgcagcgta agactgaacg gcgaatttac tggctttgag attatccgcg tacgggatcg
    18061 acatcatgcc cggatcttgt aaatagcgca gcagacgctc attaccccgg ttaatggcgt
    18121 ctgtcggcac gctgtaaccc tgttcgcctg cgcggaccag gaaatccatc acgtaagccg
    18181 tcagccagta ctcttcgtca ccgtttttat cccacagcgc aaagccgccg ttatcacgtt
    18241 gcatttgcag caaacgggaa atgccgatat cgaccgatgc acggcgtttc tcatcactgt
    18301 cgcctttgat gcccaacgcc tgcagttggg ctgcgttggt ataaagtgac gggaacaggc
    18361 cgctggcggt ttgctcaaga cagccgtacg gatacgcttt taactctttg atataacgtg
    18421 caatgttcag cggtggtttg ccgctcaaca acaattgccc ttccagcgta acaggcgaga
    18481 agttttgcaa tccatccgcc ggaatcgccc atgtctcacc aggctgtaac gccgtaccgt
    18541 aattaaccgt ttgtgccggg aacgccggac ggacgccgat tttccactgc ttatgctgat
    18601 cggcaacggt ttcacccggt aacgctaacc cgctaatggt ggcctgaatt tctccatcgc
    18661 cataacccgg caatgctcgc accgggataa acagcgtagt acgcacacct ggcgctaatt
    18721 caacggctgc gggtgaatcg ctgaccagtt caagcaaacc actggcggtc agggcaacgt
    18781 tcagtttttg cggtttatcg gtaagattag tgatatccag cgtcagacgc gaggtatcgc
    18841 cactcgccat aaagcgcggc atgttcagtt cagcaatcac cggtgcggca actatcactt
    18901 tgctttcgtt gctaccgaaa tcatctgccg tccaggcttg cgccatgacg cgcaattcac
    18961 cgttaaaatc gccaatcggc agtgtaaccg agccttcgcc ctgttcgttg agcgttaccg
    19021 gcagcgcctg ctgcgcgaca atattgacgt gattgaccag cggtttacca ccacgtttca
    19081 gctcatcacc atcgccaccg aaacgcagag ctgccagacg cccctgacct tcaataacct
    19141 gaccgtaaat atcgtaaatg tctgcgccat agcgtttctg accaaagaac gcctgccacg
    19201 gatctggcgt gacgtagtca gtaatattca gcacaccact atcaacggca gacaccagca
    19261 cattcacctg tttaggcttc tcgccatttt tagtgctggc tttaattttc acggttaatg
    19321 gttgattggg acgcattttt gctggtgttt ccagcgccag atcgaggcga cggttttcat
    19381 cgccaagcgg cagatgcaac acaccaaccg cgcgttttgg cgtcgcggag cgagatttat
    19441 cgctaggacg taccaccagc gtacttaaat acagatcatg acgattccag gttttatcga
    19501 ccggaatcgt cagatccagc ccttgagccg gaacatcaat ctcttgccac cacagcggcc
    19561 cttcactgga ctcgaccatc gcataacctt tacccgccgt tggcgcggcg atatgcaact
    19621 taatggtgtc gccagggcga taactggctt tatccagttt cagcgtgaca cggtcgggtc
    19681 gcactgcgcc gctaccgtcg ctgttgtcct gccagctata gccagcccag aaacgaacac
    19741 tactgaccgc ttcattcggc gctttgactt ccagacgata agcgccccac tctaccggaa
    19801 aactgacctt gccggtttcg tccgctttca gatccagagt ttgttcattt tcgatcagat
    19861 ctttttgatc aaactgtgac tgccagcctt catcttctga ccagttccag tagtaatcgc
    19921 ggcgttcgcg aatcaggcgc acctgcaagc ccgacacggc ttttttcacg ccttgtgcat
    19981 cgctataaac gatgtcaaaa gcggcgttac tgccttcatc aacaatgggc tgtttcaccg
    20041 tgctgtcagt gcgataatcg taaaccgatt tcaaggcgaa ctgcggacgg agccccggca
    20101 atgcattggc aggccagata gcctgctcag cgcggcgcgt caccgggcga ccgcccgatt
    20161 ccagcaaact gccctggaaa ataacctgca atggggaatg cgtttccttc cactggcttt
    20221 ctgtagaaac ttcgccgcgc cctttatcat ccagcgtcaa ctgaacttca tccagcgtgc
    20281 gggaaaggtt ttcggcagct atatcgccga attcaaaacc aggtaaggct gacacagcct
    20341 cacgcagtgg gcgcaggaaa agttgccctt gcaaagtatt accattagca ggcgcaccgt
    20401 acaggtagta tcccaccacg gagaatttca cttcatcatt cggcgtaagc ggggttttct
    20461 caccggtcag attcagcgcc atacgctctg gcataaaatc ttcgacgtgg aaatcccaca
    20521 tccggtactg gttatcgccc gtgttggcgc gaatatgcca cataccggtt gccgcattgc
    20581 tatcgagtgg ccaggtaaag tggtagaggc cattctccgg ctgactaacg acgctcctga
    20641 gtacctgccc gtcaggttta atcacgtcta acttgatggg ttgatcgggc aatgctttac
    20701 cgtctgcatc gcgcagtaaa ccattgagga ttaccgtttc acctgggcga taaagatcgc
    20761 gtgggccaaa catgaaaaac tgtttgctat agcctggcgc gccagcaatg ttaaattctg
    20821 ctaagtccag cgccggaagt tttaaatcga gtagcgttgt ctgaccgtct ttacgtgcca
    20881 gcagtaatgc cgcattttta tcattttcca gctgcacatg cccctgagcg tcactggttg
    20941 cctgagtcag agtctgccct ttctcattta ataaagagac ttcaattcct tgctgggccg
    21001 cgccgttttc cagactttgg gtaaagatat ccagacgatt gtgataacgg tgagctgaaa
    21061 cgccgatatc acttaacgta aacagcgtcg cgggattact gtaatcgtaa cgtccagcct
    21121 gattcatcac agccagatac acgcccgcct gctgaagcgg tttgatatcg cccagcggca
    21181 gcaataattt ttcacgggtg ttacgcgcag gattgagatc aaaccgtccg gtgtagacca
    21241 gatccgccat ctgcagcagt ttgtctgact gccagttcgc cagcgaattg cggtattccc
    21301 attggctaat gaatgctggc agagattctg gcttaacgcg gaagaagtta acatcgacat
    21361 tattaacgtt gagcgccatt accggcagcc cttcaacgac tttgccaggc agcagcgaac
    21421 cacggctggc aaaaccgacg ctgggttgga tgtcgcgggt agttatagtt ttttcgtaat
    21481 ctttactgaa ggttgcattg ttgagtgctt tgacctcctt gccaatagta acgatcaaat
    21541 cacgtttcgg ttcgaggtgg cgtaaacgta gctctttaag attatctgac agctcccagg
    21601 caccatccac tttgccgctt tttttatcga cgacatgaat aacgcgtgag aaatcctgat
    21661 ccgggtcgag agggatggag aacgtcagca ccagcgtggc tgcaccatca agttggactt
    21721 cagagagatc cagcaatgtc agcaccttac cggcactctg ttgggccagt ttttgtctct
    21781 ccggcacgga gagttttgct gaactcgcgt tttctgaaga ggccgcttta gtaacttcag
    21841 aaggcgcatc ttttttcacc gctgttggcg cgttatcgtt gttgtcgcac cctgccagcg
    21901 ccagcattag catgcaggcg gctacgcgta actttttcat ccctgccaca atggcccgtt
    21961 agcaacgtcg aataattatt atgcgtgaga atttacgtta tgtaattcag tatcacgccc
    22021 atacaatccg aattttagtg agaattgtgg ctcagacagc caaatcagcc tctttcgctt
    22081 gtcgcttttc actaaacatc cgacaattta gcctaacccc ggcaaaaatg gagatgccta
    22141 tgtccacgac atggtttgta ggagccgact ggctcgccga acatattgat gacccggaaa
    22201 ttcagattat cgatgcccgc atggcgtcgc ctggacagga agatcgtaac gttgctcagg
    22261 agtatctgaa tggacatatt cccggcgcag tgttttttga tatcgaagcg ctttctgatc
    22321 acacttcccc gcttccgcac atgctgccgc gcccgaaaac gttcgccgtg gcgatgcgtg
    22381 aattaggcgt taaccaggat aagcacctga ttgtctatga cgaaggtaat cttttctcag
    22441 ccccacgagc atggtggatg ctgcgcacct ttggtgtaga gaaagtgtcg attctggggg
    22501 gtggacttgc aggctggcag cgcgatgatc tgctgttaga agaaggtgca gtagagctgc
    22561 cggaaggaga gtttaacgcc gcgtttaatc ctgaagccgt ggtgaaagta accgatgtat
    22621 tattggcaag ccatgaaaat acggcgcaaa ttattgatgc ccgcccggct gcacgtttta
    22681 acgcagaagt tgatgaacct cgcccaggtt tacgtcgcgg acatattccc ggagcactga
    22741 atgttccgtg gacggaactg gtgcgcgaag gcgaactaaa aacgaccgat gaactggatg
    22801 cgatattttt tggtcgcggc gtcagctacg acaaaccaat tatcgtcagc tgcggctctg
    22861 gtgtaacggc agccgtggtt ttgttagcac tcgcgacgct ggatgtgcca aacgtgaaac
    22921 tgtacgacgg cgcatggagt gaatggggcg cgcgggcaga tttaccggtt gagccagtga
    22981 aataagtatt ttacaggcaa taaaaaaccg ccgaatttgg cggtttttta ttgctggtct
    23041 ggttcgcggc ctttccagca ggttgtatta ccgtagtaat gcaagcgcgt ctcagcggag
    23101 acaatactcg ccagtaactc tctttttgtc aagcaaaaga gagttattat tgttctgtta
    23161 gtatattatc cactgcggcc ctttccgccg tctcgcaagc gggcgctggc ttaaggaaag
    23221 gatgttccgc gaccgttaga gcaagcgcgt ctcagcgctt gctatcgcgg caatatcgcc
    23281 agtggtgctg tcgtgatgcg gtcttcgcat ggaccgcaca atgaagatac ggtgcttctg
    23341 tatcgtactt attgtttctg gtgcgctgtt ttcccaagta aataataacc ggagtctctc
    23401 cggcgacaat ttactggtgg ttaacaacct tcagagcagc aagtaagccc gaatgccgcc
    23461 ctttagggcg gcatatttta gattatccgg ttttgtttaa agtcacgcaa aaaacctccc
    23521 cagcgacgtt catagaatgg cacaatatgt tcggtaataa agtggctaat tcctttttcc
    23581 ccttttttca cctgacaaat atcgattggt tcatcgccag gtaatgtatc ggtcgctaca
    23641 cttcccgtcg cctgaataat ttcttcgata tcaccatcgg cttcaatgcc aataaataaa
    23701 ttaggctgtg cctcttcgtt ctctttaatt gaacaaataa aagcacgctt caccggctta
    23761 atggttttaa ataaggtggt gagtgaatca atcatttgtg ctggcggctc tgcaacttcc
    23821 gataatatca gcgattcacc gccttccagg atttcctggc tgctcagcgg atttccctct
    23881 tcaccaatca acaaactgat ttcacgcggc ataaattctt taccggtcgg cagtttggca
    23941 ttaaggaaga gcgtttcgcc aagggtcatc tcaaacaatg tgcgaacggg cattacgaca
    24001 aatgcctgtt cgtcttcaac cgcctgttga agcgcttcta acgaggtgaa aaaaggaatg
    24061 acgctggtgc cgtcttcttt ttcccagtgc tgtaaatcaa gcgcactatc ttcaaccaca
    24121 gcctcgccct gcgccgccgt accaggcacc cagacggtgg attccagtag agtacggaaa
    24181 aaggccgggc ggtgtgccgg ttcggttgct gctttttcca gcaggtcttc aagttcgttt
    24241 tttgtttcgg acataagaac cacaattcat tcaacgttcg gggcgcaaat gcctgatgcg
    24301 ctacgcttat caggcctaca agggattcgc aatttgttga atttgcagaa tttgtaggcc
    24361 ggataaggcg tttacgccgc atccggcata ttagtttacg ccgttaacag attagctatc
    24421 gtgcgcacac caagtcccgt agcgcccgca gaccactgtt caaccggcgc tttacggtaa
    24481 gtcgccgagc agtcgatatg cagccagcct tgctgatagt tctcaacaaa gtgcgacagg
    24541 aagcccgccg ccgtgctcgc gcctgccgga tacgccgcgc ttccggtatt gttcagttcg
    24601 gcaaagttag acggcagctg gctgcggtgg aattccgcca gcggcagacg ccagaatggt
    24661 tcgttctctt gtgaggcact cgccagcaaa cgaccggcaa gcgcatcgtc aaaactgaac
    24721 agcgcgtgat aatcattacc cagcgcagtt ttcgccgccc cggtgagggt cgccgcatca
    24781 atgatcattt ccggtttctg cgcactggca tcaatcagac catcggcaag caccagacgc
    24841 ccttcggcat cagtgttcat cacttcaact tttttaccgt tgcgataggt gatgatatcg
    24901 cccagcttga acgcattgcc gctaatcagg ttatccgcac agcagaggaa cagcttcacg
    24961 cgcttgttca gtccgcgcgt aatggcaaat gccagcgccc cggtaaccgt tgccgcgccg
    25021 cccatgtccg acttcatcga gtccataaac gcagtctgtt tgatgctgta gccgccggag
    25081 tcaaaagtga tacctttacc taccaggcac gcgtacactg gcgcttcttt atcgccagtt
    25141 gggttgtaat ccagcgccag caataccgga gaacgttctg aagcgcgtcc gacggtgtgc
    25201 agccccatat aaccttgctc acgcagatct tcgcctttgg tgatccgata agtcacacga
    25261 tcgcccgcga cgttgctgat cagatcaaca gcacgctgtg ccagttgcga tggtcccaat
    25321 tcttctgccg gtgcgttgat ggtgtcacgc acccagtcga tgatcatcag gcggttatcc
    25381 agttcctggc gctgggcatc gtccagatcc ggccactcca ctttacgcgt gcctttcggg
    25441 gctttgtaac cttgccagaa tgcccagcag cgatccgcat cccagccttc accgcttaac
    25501 tgaacatgct tgatgcccag accgtcaatc ttgcgcgccg cacgctggat cagccccaga
    25561 tcgtctgccc cgttcaaatg cagggtaatg ccgtcattat taatgctgta agttgctttt
    25621 tctccccagc gcgcgtcggc aggttgggta gagagggtaa tcttcatcgc ttctgtcatt
    25681 ttagttatcc ttctttgtaa aagggccgcc agttggcagc cccaggattt ttccgctaaa
    25741 tgattcgcgt tgcaggaagg cggcaagtga gtgaagcccc aggagcatag ataactatgt
    25801 gactggggtg aacgagcgca gccaacgcat ctgcggcgtg aagcatgacg cggaaattat
    25861 tcggcctcgt ccagccagac taacaaaatc gcttcgagga ttttctcgtt ggatgcctgc
    25921 gggtcgtcgt cgaaatcttc cagatcgcaa atccactgat gcatatcggt gaatcgaacc
    25981 gttttcggat caagatcagg atacgcatcg tacagtgctt cgccaatttc gcggctatcg
    26041 gtccacttaa gtcccatact aacctctgtt aatgctcacg cgcatggttg atagtgtaac
    26101 gcgggatttc gactactaaa tcttcgtcgg taacgcgtgc ctggcagctt aaacggcttt
    26161 cgggctccag tccccaggct ttgtccagca tgtcgtcttc ctgctctgag ctttctggca
    26221 gcgagtcaaa accttcacga acgatgcagt ggcaggtggt gcaagcacag gatttttcac
    26281 aggcgtgttc aatctcgata ccgttacgca gcgctgcgtc gagaatggtt tcaccgctat
    26341 tagcttccag aacagcgcca tcagggcaga ggtcctgatg aggcaaaata acaatctttg
    26401 gcatattaaa cctcgtccac ggaatggcct ttcagcgcac gacgaaccga ctggtccatg
    26461 cggcgagcgg cgaaatcctg ggtttgtttg tctacgtttt taatcgcttg ttcgatggcg
    26521 tcaacatcat cgccctgagc cacttcactc aggtgagcgg cagcattgtc aatgacctga
    26581 cgctctgcgg cgcttaacag cgcggcatca gcagccagcg cgccgtgcag actttccagc
    26641 acacgcgccg cttctacttt ttgttctgcc agcatacggg cttttacgtc ctgctcggca
    26701 tagctcattg aatctttgat catcgaagcg atttcgctat cggtcagacc gtaagaaggt
    26761 ttgacctgaa tagacgcctc aacgccggtg gatttctcca tcgccgtcac gctcaaaaga
    26821 ccgtcggcat cgacctggaa cgtcacgcga atatgcgcac cgccagccgg tagcgccgga
    26881 ataccacgca gcgcaaaacg cgccagtgag cggcagtcct gcaccagttc gcgctcaccc
    26941 tgcattacat ggatagacat cgccgtctga ccatctttaa aggtggtgaa atcctgagcg
    27001 cgggccaccg gaatagtggt attacgcgga atcactttct ccaccaggcc gcccatcgtt
    27061 tcgaggccca gcgacagtgg gatcacatca agcagcagca tttcgctgtc cggcttgtta
    27121 cccaccagaa tatccgcctg aatcgccgcg ccaatagcga cgactttatc cgggtcgatg
    27181 gaagtcagcg gtggacgacc gaaaaattcg cctacccgtt cacgcaccag cggcacgcga
    27241 gtagaaccgc caaccatcac cacttccagc acttcatcag cttctacgcc cgcgtctttc
    27301 agcgcacgac gacaagccag taaggttcgt tttaccagtg gcgcgatcag ttcattgaat
    27361 tgttcacggc tgatttcgcc ctgccagccc gcaacgttaa cggtcacgga gtccgcatcg
    27421 ctcagcgcga ttttggctgc aatggcggca tccagcagtt cacgctgaac gcggttatcg
    27481 ctacgatcag gaatgtccgc ctgctcgcga atgtaatccg ccagcagatg gtcgaaatca
    27541 tcgccgccga gcgcggaatc accgccggtt gccagcactt caaacacgcc gcgacttaag
    27601 cgcagaatgg aaatatcaaa cgtcccgcca ccgaggtcat aaacggcgat cacgccttcc
    27661 tgaccggaat ccagcccgta ggcgatagcc gcagcggtcg gttcgttaag taagcgcaga
    27721 acatgcaacc ccgccagacg cgccgcgtct ttggtgccct gacgctgggc atcgtcaaag
    27781 tacgccggaa cggtgataac gacaccatcc agctcgcctg ccagggcttc agttgcccgc
    27841 gccgccagtg ctttgaggat gtccgcagaa acgcgcaccg ggttcagcag ccccgccgcc
    27901 gtttcaatca ttggcaggcc gttttcgctg gcctggaatt gataaggcaa atgcggatag
    27961 cgttgctgga tatcagccag cgagcgtccc atcaggcgtt taacagaact aatggtgttg
    28021 gcggtatcga gcgctgcgtt agtacgcgcg tcataaccca ccgaatgccc ttgctgttga
    28081 tagtgaacaa cagatggcag caggtgacgg ccttcatggt cggctaacgt ttcggcctga
    28141 ccgctgcgca ctgtcgctac cagcgagttg gttgtgccca ggtcaatacc ggccgccaga
    28201 cgacgctgat gcggcgcagc actcaaacca ggttcactaa tttgtaataa ggccatgttt
    28261 agcttccaga aattaaaaat cgagcagttt ttcttcgagt tgttcggcac tgcttcgcag
    28321 tttatcgaga aaacgcagct tacgcacggt atccgccgcc gcgtcccacg tctcgttgtc
    28381 taactgttca accatcaact gatggcgggt atcaaacatc tttttcacac gtttgataaa
    28441 gctttccagc cgcgcttcat ctttcgcctg ttcgatctcg tccagttctt cgcgcagctc
    28501 cagctgttcc atcaggaacg cggtgtcgcg cacagtatgc tgctcgctgg cgagatcaaa
    28561 accgtgcaaa gaaagcaaat attccgcgcg cattaacgga tgacgcagcg tttgccaggc
    28621 ctggttaatg gttgcagatt gctgtacggc ggcgagttgt tccgcctggc ttccgctggc
    28681 gaatttatca ggatgatact gacgttgtag atcctgaaaa cgcaggctca gtgcctgggt
    28741 atcgagttga taacgggcag gcaagccaaa gagggtgaag taatccataa cattctcagg
    28801 gctgcgatcc gccgcgataa cggcgaatca ggtaaaacaa accccacgcg caggcgacca
    28861 cggtggggtt atcggtatgc gcatcaaacg tggaagcttt cgccgcaacc acactcatct
    28921 ttaacgttcg ggttggtgaa tttaaaccct tcattcaggc cttcttttac gaagtccagc
    28981 tgcgtaccgt ccagaaattg caggcttttg ccatcgacca cgactttcac gcctttgtct
    29041 tcaaacacga tgtcttccgg cgtcggttcg tcaacaaatt ccagtacata agccatacct
    29101 gaacatccgg aggttctcac gcccagacgc aggccaaacc ctttgccgcg gttagccaga
    29161 aaggtattta ctcgcgctgc tgcactgtcg ctcagtgtaa tcgacataac caaacctcaa
    29221 ctcttatttt gcttcacgtt tgcttttata gtccgcaatg gcggctttga tcgcgtcttc
    29281 tgccagaata gaacagtgaa ttttcaccgg cggcagttca agttcttcag caatatcggt
    29341 gtttttgatc gcctgcgctt cgacgagaga cttccctttc acccattcgg tgaccaggga
    29401 gctggaagcg atagcagaac cgcagccgta agttttaaaa cgcgcgtctt caatgatacc
    29461 ttcatcgttg actttaatct gcaacttcat cacgtcgcca caggccggtg cacccaccat
    29521 gccgctgccg acgttctcgt cgttgttgtc aaaggaaccc acgttacgcg gattctcgta
    29581 atggtcgata actttttcgc tgtaagccat tataaattct cctgattccg ataccgatta
    29641 atgatgagcc cattcgatgc tgttcagatc cacgccctgc ttgtacattt cccacagcgg
    29701 agaaaggtca cgcagacgac cgatggattt acgaactaac tcgatggtgt agtcgatctc
    29761 ttcttcagta gtaaaacgac ctaaagagaa acggatagag ctatgtgcca gctcgtcgtt
    29821 cagccccagc gcgcgcagca cgtaggacgg ttcgaggctt gctgacgtac aggcggaacc
    29881 tgaagaaact gcgaggtctt tcagcgccat aatcagcgac tcaccttcaa cgtagttgaa
    29941 gctgacgttg agaatgttcg gcgcaccgtg ttccaggtca ccgttcaggt aaacttcttc
    30001 gatatctttg atgccgttcc acagacggtt acgcaggccg cgcagacgtt ccatctcggt
    30061 cgccatctct tcttttgcga tgcgataggc ctcgcccatt ccgacgatct ggtgaacagg
    30121 cagagtgccg gaacgcatac cgcgctcgtg accgccgccg tgcatttgcg cttcgatgcg
    30181 tacgcgcggt ttacgacgta catacagcgc accgatacct ttcgggccat agattttgtg
    30241 accggagaaa gacatcaggt caactttcaa ctggctcagg tcgataggca gtttgcccac
    30301 gctctgggtt gcatcaacgt gatagataat gccacgagca cggcacattt cgccgatagc
    30361 cgcgatatcc tgcaccacgc cgatttcgtt atttacgtgc atgatggaaa caaggatggt
    30421 gtcgtcacgc atcgctgctt caagttcttt caggtcgata atgccgttac gctgcggtgc
    30481 caggtaggtg acttcaaaac cttcgcgctc cagctgacgg caggtatcca gtaccgcttt
    30541 gtgttcggtt ttgctagtga tgatgtgctt gccttttttc tgataaaagt tggctgcacc
    30601 tttgatcgcc aggttgtcag attcggttgc accagaggta aagacgattt cacgcggatc
    30661 agcgccgacc agatcggcaa tctgattacg ggcgatatct accgcttctt cagcctgcca
    30721 gccgaaacgg tgagaacgag aggccgggtt accaaaggtt ccgtccatcg tcatgaactg
    30781 catcattttc tcggcaacac gcgggtccac cggcgtggtt gcggagtagt cgagataaat
    30841 cggtaatttc attgctctat aaactccgta catcactcaa tgcaaggaat caggctaccg
    30901 gctggatgta cgaccgtgtt tacggagtat ttagcactcc ggcctgattc tgaattcttt
    30961 ttattaagcg cgtaacttaa cgtcgatcgc gtcttgtgtg cgggtgcgtg gcgcgtcgtg
    31021 agtatgctga cgaccagaca catccagcac ttcctggtta ttaaccagtt cgcctaaagt
    31081 aatgttgttg agaaaaccgg tgagacggtc gctcaaatca cgccacagcg cgtgggtcag
    31141 gcatttatcg ccgccctggc agccgccttt accctgacaa cgggtggcat ctacagattc
    31201 gtcaacggcg ctaatcactt cgccaacggc gatgctgctg gcatctttgc ctaacagata
    31261 accaccgcct ggtccacgta cgctggaaac cagaccattt ttacgcagac gggaaaacag
    31321 ttgttccaga taagaaaggg aaatgccctg acgttcggaa atatcagcca acggtaccgg
    31381 gcccgcttca gagttgagcg caacgtcaag cattgcggtc acggcatagc gccctttaga
    31441 tgtcagtctc atgtcttact tcacctcaaa ctcgcccctg cccggggttt tttattgtaa
    31501 aagtgggggt attgaatagc agggtcaagt ctgacattcc cgagtaaatt ggtcaactat
    31561 ttacttgact gatttagtcg ggtatttaac cttcagtgcc atttttttat cgtggcgttt
    31621 gtacctgttg tcggatgcgg tgtgaacacc ttatccgacc tacggttctg tacattgtag
    31681 gcctgataag acgcgttaag cgtcgcatca ggcaactact gttattcggc cttgttacct
    31741 ttattctgct gctcaataga agccagaatc ccgcgcagga tattcaattc ctggctttcc
    31801 gggcgcgcac gggtaaacag acggcgcaat ttattcatca cctgccccgg atggttttca
    31861 cggataaaac cggttgccag cagcgtttgt tccagatgac cataaaaacg ctccagatca
    31921 tcgaccagcg gatacggcgt ctcttcatgc tcgacctgct cgccgttttc ctgagttgcc
    31981 agccaggcca tgcgcacttc ataggcaata acctgaaccg ccatcgccag gttcagcgag
    32041 ctgtattccg ggttagccgc aatcgcgaca tgataatggc atttctgcaa ctcttcattg
    32101 gtcaagccga cgcgctcgcg accaaacacc agcgccaccg gggtatttgc cgcttcagcg
    32161 acgcttttca ggccgcattc gcgcgggtcg agcatcggcc atggcagcgt gcgggaacgt
    32221 gcgctggtgc ccaccaccaa gctacaaccg gctaacgctt cgtcgagcgt atcgacgatg
    32281 tgagcattac caatcacatc gctggcccct gctgccaggg caatcgcctg ggagtcgggt
    32341 ttcaccagtg gattaaccag ccacagattg gttaatccca ttgttttcat ggcacgggca
    32401 acagaaccca tattgccggt gtgtgacgtc tccaccagca caattcgaat attttgcagc
    32461 attgtctttc ttcatctaaa gattattcac gcatcttatc ataaaacgaa gacagatgcc
    32521 gatctcgctg ctatactctg cgccgttttc ccgttcttta acatccagtg agagagaccg
    32581 atgcatccga tgctgaacat cgccgtgcgc gcagcgcgca aggcgggtaa tttaattgcc
    32641 aaaaactatg aaaccccgga cgctgtagaa gcgagccaga aaggcagtaa cgatttcgtg
    32701 accaacgtag ataaagctgc cgaagcggtg attatcgaca cgattcgtaa atcttaccca
    32761 cagcacacca tcatcaccga agaaagcggt gaacttgaag gtactgatca ggatgttcaa
    32821 tgggttatcg atccactgga tggtactacc aactttatca aacgtctgcc gcacttcgcg
    32881 gtatctatcg ccgttcgtat caaaggccgc accgaagttg ctgtggtata cgatcctatg
    32941 cgtaacgaac tgttcaccgc cactcgcggt cagggcgcac agctgaacgg ctaccgtctg
    33001 cgcggtagca ccgctcgcga tctcgacggt accattctgg cgaccggctt cccgttcaaa
    33061 gcaaaacagt acgccactac ctacatcaac atcgtcggca aactgttcaa cgaatgtgca
    33121 gacttccgtc gtaccggttc tgcggcgctg gatctggctt acgtcgctgc gggtcgtgtt
    33181 gacggtttct ttgaaatcgg tctgcgtccg tgggatttcg cggcaggcga gctgctggtt
    33241 cgtgaagcgg gcggcatcgt cagcgacttc accggtggtc ataactatat gctgaccggt
    33301 aacatcgttg ctggtaaccc gcgtgttgtg aaagccatgc tggcgaacat gcgtgatgag
    33361 ttaagcgacg ctctgaagcg ttaatgactc aggcgggtga tgtcactcac ccgccctcgc
    33421 ctttcaggcg ctattccgaa atacttcctc accgctttac tttctttcgt cactctccca
    33481 ccatctttcc ccgattaatg gatgataaag aagtcacaag gaaaggttat ggcgctgcca
    33541 gtgaacaaac gcgttctcaa aattctgttt attctctttg ttgttgcctt ctgcgtttat
    33601 ttagtgccgc gcgttgccat caacttcttc tattatcctg acgataaaat ttacggtccc
    33661 gacccctggt cggcggaatc cgtcgaattt acggctaagg acggtactcg tctgcaaggc
    33721 tggtttattc cttcttcgac gggccctgct gacaatgcca tcgcaaccat cattcatgct
    33781 cacggcaatg ccggaaatat gtccgcccac tggccgctgg tcagttggtt acccgagcgt
    33841 aatttcaacg tttttatgtt tgattatcgc gggtttggta aatcaaaagg cacgccgtcc
    33901 caggccggat tgctggacga tacgcaaagt gccatcaatg tggtgcgcca tcgcagtgat
    33961 gtaaacccac aacggctggt gctgttcggg cagagtattg gcggggcgaa tattcttgct
    34021 gttattggtc aggatgatcg tgaaggcata cgtgcggtga tcctcgactc cacatttgcc
    34081 tcttatgcaa ccatcgccaa tcagatgatc cccggcagtg gctacttact tgatgagagt
    34141 tacagcggcg aaaattatat cgccagcgtc agcccgatcc cgcttttact cattcacggt
    34201 aaagctgatc acgttatccc atggcagcac agcgaaaagt tgtatagcct ggcaaaagag
    34261 acaaaacggt tgatcctaat cccggatggc gaacacattg atgctttttc cgatcgtcac
    34321 ggcgatgttt atcgcgaaca gatggtggac tttatcctta gcgcgttgaa tccgcagaac
    34381 taacccatga tcgctagcac gataatcatt cacaaaacca ccttaagaca tgctaatcca
    34441 ctggtcagaa cagtttaaga tgagaaaaat tctgtgacgc ttgccaacat ttctgatgat
    34501 tagcattccc ttcgccattt acctgagcaa actttagcta ttcttatcaa ttatgcttat
    34561 gggagatcta cagatgatgc ctacgcttgc tccaccatct gtcctttcgg ctccccagcg
    34621 ccgctgccag atcttgctga cgctctttca gccggggttg accgccacca tggcaacctt
    34681 cagcgagctt aatggtgtgg atgatgatat tgccagtctt gatatcagcg aaacaggacg
    34741 ggagatcctg cgctatcatc aactcacact gacgactggt tatgacggta gctaccgggt
    34801 tgaaggtaca gtgcttaacc aacgtttgtg tttatttcac tggctacgac gtggtttccg
    34861 tctgtgtccg tcatttatta ccagccaatt cacccccgcc ctgaagagtg aactgaagcg
    34921 gcgcggaatt gcgcgtaact tttacgacga taccaatcta caagcgttag tgaatctctg
    34981 ctcccgacgg ctgcaaaaac gctttgaaac gcgcgatatt catttcctgt gtctgtatct
    35041 gcaatattgt ttgctgcaac accacgctgg aattacgcct cagtttaatc cgctccaacg
    35101 tcgctgggcg gaatcctgcc ttgaatttca ggtagcgcag gaaattggac gccactggca
    35161 gcgtcgggcg ctccagcctg taccgcctga tgagccactg tttatggcat tacttttttc
    35221 catgttgcgg gttcccgatc cattgcgtga tgcgcatcag cgagacagac aattgcgtca
    35281 gtctatcaaa cgtctggtaa accattttcg tgagctggga aatgttcgtt tttatgatga
    35341 acaggggtta tgcgatcagc tttataccca cctcgcccag gcgttaaatc gcagtttgtt
    35401 tgccatcggt attgataata ccctgccaga agagttcgcc aaactgtacc cacgcctggt
    35461 gcgcaccacc cgcgcggcgc tggccggatt tgaaagtgaa tacggcgtcc atctttctga
    35521 tgaggaaagt ggtctggtcg cggtgatttt cggtgcctgg ctaatgcagg aaaacgatct
    35581 gcatgaaaaa cagattattc ttcttaccgg gaatgatagc gagcgagaag cgcagattga
    35641 gcagcagtta cgcgaactaa cgttactgcc gctcaacatt aaacatatgt cggtaaaggc
    35701 atttttgcag acaggcgctc cgcgcggcgc ggcactgatt attgcgcctt ataccatgcc
    35761 gttaccgctc ttttcaccac cgctgatcta tacggacctg acactgacaa cacatcaaca
    35821 ggagcagatc cgcaaaatgc tcgaatcagc atgagggaac aactttcggg cgcaaaaaca
    35881 ttgccggaag cgccaccagc gccattaccc agaacacgcc gtggcccaga tattgataca
    35941 ggaaaccggc gaaaacggtc atgatagcta tactgccgcc catcgcgacg gcagagtaaa
    36001 ccgcctgtaa acggatgact tcgctaccct ggcgagcggc aatatagcgc atggcggcca
    36061 ggtggcagac cgtgaaggcg ccgcaatgca gaatttgcac cactatcaac cacggcaacg
    36121 ccgtagttgc tcccataatg ccccagcgca ctacgccgca aatcgccgag atcaacagca
    36181 tatcgcgtgc actacaacgg cggaaaagtt tattactcag cgcaaagata atgacttccg
    36241 ccaccacgcc cagcgaccac aaatacccca ccgccgaggc cgagtagcca gctgcctgcc
    36301 agtaaatggc gctaaaaccg taataggccg catgtgcccc ctgcaataaa caaacgcagg
    36361 ccagaaagcg ccagttctga agaaccagcg ccaaccacgc tgaccaaccg gtgctctcct
    36421 gctggcggct tgccccttgt ggctgaatcg tcggacggat gagaaagccg agcagcatag
    36481 atgccacgcc caatgttaac agcgcgagga tcacctgata atcaaacata gtgaccagtt
    36541 tgcccgtcag cgccgagcca atgacaaacg ccaccgagcc ccacagtcgc actttgccgt
    36601 aatcaagcgg gaactgcttt tgccacgtat tcgccagtgc atcggtcaac ggtaccagcg
    36661 gtgagaaaaa gaggttaaag ccaatcatca ccagcatcag ccacgctacg tgcgcccccg
    36721 cccagaaggc gacagcaaag agaagtgtca tcattgccag cacgcgcaag gcggaaatca
    36781 ggcgagaagg atcgctgacg cggggcgcga tgagcaaact cccgagaaaa cgggcaacca
    36841 gacctgcccc caataacagg ccgatggttt ctggcgttaa accaatccct ttaagccaga
    36901 cgctccagaa aggtagaaaa atgccgtaac taaaaaagta tgtgaaatag ccgagcgcca
    36961 accagcgcgt ggattgcaaa accatgagtc cctcccgtca ggaggcgtta gtctggggtt
    37021 aatcgaatgt tggtgcaagt tgaaaaataa gaatattcga gcctgcttcc cgatgtctgt
    37081 aacgccagtt cacaagcact aaaaaactgc gatccgcgac gcatgttgca aaaataatgc
    37141 gtaattatgc cgttacgctt gccaaacgtt cctgcacaat ggcgatgaaa tcgcgtaatg
    37201 ccggcttcat ctcccctttc ttccacgcca tcagtaaagc aatggaaggc acatttccgg
    37261 caatgggacg aaaaacaacc tgtccggtat taaaattatt catataaccg ggtatcaaag
    37321 tgacgcccag ccccatgccc accagattca tggtcaccag aatattcgtt gccacctgga
    37381 cgatatttgg ctggctgttt tcttgcgcaa accacgcttt aacgatcggc gcaagcgaac
    37441 cggaatacgc cggatcggta ctgacgaaat tcacgccatc cagttgcgcg gcggtgatct
    37501 ctttttcatg tgctaaaggg tgatcaaccg gtaacacaac cactaatggt tcgtcaaaaa
    37561 gctccagata atcaatctcc gggctataaa caggatggcg cattaagccg acgtcgagtt
    37621 caccacggcg aattttttcc tcctgttgcg tggtgattaa actcaccagc tcaatcaagg
    37681 tgtctggctg tctgagacga aacatcggta atacttttgg cagtaaattc acttccgccg
    37741 atggcacaaa gccaatggtt aattgtctgt cttcctgaac agttttccgc gcccgtaatt
    37801 tggcattttc cgcttgttcg aggattgcca gcgcgtcctg gagaaaacat tctcccgccg
    37861 ccgtcaacgc gactttgcgc ttatccctca ccagtaacgg aacaccgaca cagttttcaa
    37921 gatcgcggat ctggctgctt aacgaaggct gtgaggtatg cagtttttcc gccgcacggg
    37981 taaagttcag tgcctgcgcc actgcgacga aatagcgtaa atgccgtagt tccatcacct
    38041 tccccttgtt atcgaaaaaa cgtctcagct ggtagaaatt aactatttca catattagca
    38101 accaaccagc aacatcctta tggcacaaaa atagaaggtc aatacatctt atctttcagg
    38161 attaaaaaat atgaccacac cctcagattt gaacatttac caactgattg acacccaaaa
    38221 tggtcgggtc actccgcgta tttataccga cccggatatt taccaactgg agcttgagcg
    38281 tattttcggt cgttgctggc tatttctcgc ccacgaaagc cagatcccaa aacccggtga
    38341 tttctttaac acctacatgg gagaagatgc ggttgtcgta gtgcgtcaga aagacggcag
    38401 catcaaggcg tttctcaacc aatgccgcca ccgggccatg cgtgtgagtt atgcagattg
    38461 cggcaacact cgcgccttta cctgcccgta tcacggctgg tcttatggca ttaacggcga
    38521 gttgatcgat gtaccgctgg aacctcgcgc ctacccacaa gggttgtgta aatcccactg
    38581 ggggctaaac gaagttcctt gtgtggagag ttataaaggg ctgatttttg gcaactggga
    38641 taccagcgca ccgggcctgc gtgattacct tggtgacatt gcctggtatc tggatggcat
    38701 gctggatcgt cgcgaaggcg gcaccgaaat tgtcggcggc gtacaaaagt gggtgatcaa
    38761 ctgtaactgg aaatccccgg cagagcagtt cgccagtgac caatatcatg ctctgttcag
    38821 ccatgcttct gccgttcagg tattaggggc gaaagatgat ggcagcgata agcgtctcgg
    38881 tgatggacaa accgcccgcc cggtgtggga aaccgccaaa gatgcgctgc aatttggtca
    38941 ggacggtcac ggtagcggtt tcttctttac tgaaaaaccg gatgctaatg tctgggtcga
    39001 tggcgcggtt tccagctatt accgcgaaac ctatgccgaa gcagaacaac gtttaggtga
    39061 agttcgcgcc ctgcgcctgg cgggtcataa caatatattc cccacgcttt catggctaaa
    39121 cggcactgcc acactccgcg tctggcatcc gcgcggccct gatcaagttg aagtgtgggc
    39181 gttctgtatt actgacaaag ccgcctccga tgaagttaaa gccgcttttg aaaacagcgc
    39241 cactcgtgct tttggtcctg ctggttttct cgagcaggat gactcggaga actggtgtga
    39301 aatccagaaa ttgcttaaag gccaccgcgc ccgcaacagc aaactgtgtc tggaaatggg
    39361 gcttggtcag gaaaagcgcc gcgacgacgg cattcctggc attactaact atatcttttc
    39421 agaaactgcc gctcgtggaa tgtaccaacg ctgggccgat cttctgagta gcgaaagctg
    39481 gcaggaagtg ctcgataaaa ccgccgctta ccagcaggag gtgatgaaat gagtgcgcaa
    39541 gtttcactag agttacatct ccgcattagc cagtttctct ttcacgaagc cagcttactg
    39601 gacgactgga aatttcgtga ctggctggcg cagctcgacg aagagattcg ttacaccatg
    39661 cgcaccacag ttaacgcgca aacacgcgac cgccgcaaag gcgtccagcc accgacaacc
    39721 tggattttta atgacaccaa agaccagctg gagcggcgaa tcgcccgtct ggaaacgggc
    39781 atggcctggg cagaagagcc gccgtcacgc acccgtcact taatcagcaa ctgccagata
    39841 agcgaaaccg acatcccaaa cgtatttgct gtgcgggtaa attatctgct ttatcaggca
    39901 caaaaagagc gcgatgaaac attctatgtt ggaacgcgtt tcgacaaagt tcgccgtctg
    39961 gaagatgaca actggcgctt gctggaacgg gatatcgtcc tggatcaagc ggtaatcact
    40021 tcccataacc tgagtgtact gttctgatga atcgaattta tgcgtgtccc gttgcggatg
    40081 tgccggaggg tgaggctctc cggatcgata cctcgcccgt catcgccctg ttcaacgttg
    40141 gcggcgagtt ttatgccatt aacgatcgtt gcagccatgg taatgcgtcg atgtcagaag
    40201 ggtatctgga agatgacgcc acggtggagt gcccgctaca cgccgccagt ttttgcctga
    40261 aaacggggaa agcgttatgc ctgcccgcca ccgatccgct caccacttat ccagtacacg
    40321 ttgaaggtag tgacattttc atcgacttac cggaggcgca gccatgagcg atctgcataa
    40381 cgagtccatt tttattaccg gcggcggatc gggattaggg ctggcgctgg tcgagcgatt
    40441 tatcgaagaa ggcgcgcagg ttgccacgct ggaactgtcg gcggcaaaag tcgccagtct
    40501 gcgtcagcga tttggcgaac atattctggc ggtggaaggt aacgtgacct gttatgccga
    40561 ttatcaacgc gcggtcgatc agatcctgac tcgttccggc aagctggatt gttttatcgg
    40621 caatgcaggc atctgggatc acaatgcctc actggttaat actcccgcag agacgctcga
    40681 aaccggcttc cacgagctgt ttaacgtcaa cgtactcggt tacctgctgg gcgcaaaagc
    40741 ctgcgctccg gcgttaatcg ccagtgaagg cagcatgatt ttcacactgt caaatgccgc
    40801 ctggtatcct ggcggcggtg gcccgctgta caccgccagt aaacatgccg caaccggact
    40861 tattcgccaa ctggcttatg aactggcacc gaaagtgcgg gtgaatggcg tcggcccgtg
    40921 tggtatggcc agcgacctgc gcggcccaca ggcgctcggg caaagtgaaa cctcgataat
    40981 gcagtctctg acgccggaga aaattgccgc cattttaccg ctgcaatttt tcccgcaacc
    41041 ggcggatttt acggggccgt atgtgatgtt ggcatcgcgg cgcaataatc gcgcattaag
    41101 cggtgtgatg atcaacgctg atgcgggttt agcgattcgc ggcattcgcc acgtagcggc
    41161 tgggctggat ctttaaggaa gcacgatgaa agaaaaaacg atcattattg tcggtggcgt
    41221 gcaagcggcg gcaatggctg cggcctcgct acgccagcaa gggttcaccg gtgagctgca
    41281 tctgttttcc gatgagcgac atcttcctta tgaacgacct ccactctcga aatccatgtt
    41341 gctggaagat tccccgcagt tacagcaggt gttacccgct aactggtggc aggaaaacaa
    41401 tgttcatctg cattccggtg taaccatcaa aacgctgggt cgcgacacac gagagttagt
    41461 gttaaccaac ggcgaaagct ggcactggga tcagcttttt atagcaaccg gcgcggcagc
    41521 tcgaccgctg ccgttgcttg atgcactggg agaacgctgc tttaccctac gccatgccgg
    41581 tgatgccgcc agactgcgag aagttctgca gcccgaacgg tcagtcgtga ttgtcggtgc
    41641 cggaactatt ggtctggaac tggctgccag cgccacgcag cgcagcgcag atgtaaggtg
    41701 acagtgattg aactggcggc aaccgtcatg ggccgtaatg caccaccgcc cgtgcaacgc
    41761 tatcttttac agcgccacca gcaggctggt gtgcgcattc tgctcaataa tgccattgaa
    41821 catgtagtcg atggtgaaaa agtagaactg acgctgcaaa gtggggaaac gcttcaggct
    41881 gatgtggtga tttacggtat tggtatcagc gccaacgagc aactggctcg cgaggccaac
    41941 cttgatactg ccaatggcat tgtcattgat gaggcttgcc gcacctgcga tcccgcgatc
    42001 tttgccggtg gcgatgtggc aatcactcgt cttgataatg gtgcactaca ccgctgtgaa
    42061 agctgggaaa acgccaataa ccaggcgcaa attgccgctg ccgcaatgtt agggctaccg
    42121 ctaccgctac tgccgtggtt ctggagcgat cagtacagtg ataacttaca gtttattggc
    42181 gatatgcgtg gcgatgactg aggtagcctg agtttaacgg acactccttc ctgaaataga
    42241 atggcatca
//
LOCUS       DAJVUY010000011        40980 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.011, whole genome shotgun sequence.
ACCESSION   DAJVUY010000011 DAJVUY010000000
VERSION     DAJVUY010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40980
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.011"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..332)
                     /locus_tag="OQQ72_000586"
     CDS             complement(<1..332)
                     /locus_tag="OQQ72_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS2010430.1"
                     /translation="MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFDLSSS
                     WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFV
                     AQTAMCCG"
     gene            complement(413..1840)
                     /locus_tag="OQQ72_000587"
     CDS             complement(413..1840)
                     /locus_tag="OQQ72_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HCS2010431.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETEPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY
                     CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI
                     AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL
                     HRNLLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCD
                     YWREYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRF
                     HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPT
                     EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC
                     LGVIKIIFYIFIFAGLIGKILHLFG"
     gene            complement(1837..2544)
                     /locus_tag="OQQ72_000588"
     CDS             complement(1837..2544)
                     /locus_tag="OQQ72_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS2010432.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ
                     YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP
                     LADYPTCPETLKDMSDL"
     gene            2707..3684
                     /locus_tag="OQQ72_000589"
     CDS             2707..3684
                     /locus_tag="OQQ72_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS2010433.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE
                     GVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(3754..4236)
                     /locus_tag="OQQ72_000590"
     CDS             complement(3754..4236)
                     /locus_tag="OQQ72_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HCS2010434.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            4471..7053
                     /gene="leuS"
                     /locus_tag="OQQ72_000591"
     CDS             4471..7053
                     /gene="leuS"
                     /locus_tag="OQQ72_000591"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCS2010435.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            7068..7649
                     /gene="lptE"
                     /locus_tag="OQQ72_000592"
     CDS             7068..7649
                     /gene="lptE"
                     /locus_tag="OQQ72_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HCS2010436.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSITKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGHDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            7649..8680
                     /gene="holA"
                     /locus_tag="OQQ72_000593"
     CDS             7649..8680
                     /gene="holA"
                     /locus_tag="OQQ72_000593"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCS2010437.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            8682..9323
                     /gene="nadD"
                     /locus_tag="OQQ72_000594"
     CDS             8682..9323
                     /gene="nadD"
                     /locus_tag="OQQ72_000594"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HCS2010438.1"
                     /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIANKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            9347..9957
                     /locus_tag="OQQ72_000595"
                     /pseudo
     CDS             9347..9957
                     /locus_tag="OQQ72_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            10217..10534
                     /gene="rsfS"
                     /locus_tag="OQQ72_000596"
                     /gene_synonym="rsfA"
     CDS             10217..10534
                     /gene="rsfS"
                     /locus_tag="OQQ72_000596"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCS2010439.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            10538..11005
                     /gene="rlmH"
                     /locus_tag="OQQ72_000597"
     CDS             10538..11005
                     /gene="rlmH"
                     /locus_tag="OQQ72_000597"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HCS2010440.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            11036..12937
                     /gene="mrdA"
                     /locus_tag="OQQ72_000598"
     CDS             11036..12937
                     /gene="mrdA"
                     /locus_tag="OQQ72_000598"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HCS2010441.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTTHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            12940..14052
                     /gene="mrdB"
                     /locus_tag="OQQ72_000599"
                     /gene_synonym="rodA"
     CDS             12940..14052
                     /gene="mrdB"
                     /locus_tag="OQQ72_000599"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HCS2010442.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            14063..15151
                     /gene="rlpA"
                     /locus_tag="OQQ72_000600"
     CDS             14063..15151
                     /gene="rlpA"
                     /locus_tag="OQQ72_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HCS2010443.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            15291..16502
                     /gene="dacA"
                     /locus_tag="OQQ72_000601"
     CDS             15291..16502
                     /gene="dacA"
                     /locus_tag="OQQ72_000601"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HCS2010444.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            16613..16876
                     /locus_tag="OQQ72_000602"
     CDS             16613..16876
                     /locus_tag="OQQ72_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HCS2010445.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVEILYEELGKIDIVRMVL"
     gene            16977..17618
                     /gene="lipB"
                     /locus_tag="OQQ72_000603"
     CDS             16977..17618
                     /gene="lipB"
                     /locus_tag="OQQ72_000603"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HCS2010446.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
     gene            17877..18830
                     /locus_tag="OQQ72_000604"
     CDS             17877..18830
                     /locus_tag="OQQ72_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HCS2010447.1"
                     /translation="MDSNNQIEPCLSRKSSEGKPQIFTTLRNIALNLLTIFEAVYVHK
                     GIVNAAKVLNLPPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLES
                     ILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL
                     SQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLL
                     PEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWP
                     LEKLPFPSLNKEQIDFSIHYNKFSLRDPILHGVIDVIRNAF"
     gene            19039..20004
                     /gene="lipA"
                     /locus_tag="OQQ72_000605"
     CDS             19039..20004
                     /gene="lipA"
                     /locus_tag="OQQ72_000605"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCS2010448.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(20105..20308)
                     /gene="tatE"
                     /locus_tag="OQQ72_000606"
     CDS             complement(20105..20308)
                     /gene="tatE"
                     /locus_tag="OQQ72_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HCS2010449.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVDLQAEKLSHKE"
     gene            complement(20437..21225)
                     /locus_tag="OQQ72_000607"
     CDS             complement(20437..21225)
                     /locus_tag="OQQ72_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HCS2010450.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLHLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            21318..21701
                     /gene="crcB"
                     /locus_tag="OQQ72_000608"
     CDS             21318..21701
                     /gene="crcB"
                     /locus_tag="OQQ72_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCS2010451.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGSFAMTALAFWLFSASTAH"
     gene            complement(21756..21965)
                     /gene="cspE"
                     /locus_tag="OQQ72_000609"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(21756..21965)
                     /gene="cspE"
                     /locus_tag="OQQ72_000609"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS2010452.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(22140..22700)
                     /gene="pagP"
                     /locus_tag="OQQ72_000610"
     CDS             complement(22140..22700)
                     /gene="pagP"
                     /locus_tag="OQQ72_000610"
                     /EC_number="2.3.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) palmitoyltransferase PagP"
                     /protein_id="HCS2010453.1"
                     /translation="MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAPTWQQ
                     PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS
                     WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP
                     VTFQMTYIPGTYNNGNVYFAWMRFQF"
     gene            23289..24674
                     /gene="dcuC"
                     /locus_tag="OQQ72_000611"
     CDS             23289..24674
                     /gene="dcuC"
                     /locus_tag="OQQ72_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HCS2010454.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(24715..25395)
                     /gene="dpiA"
                     /locus_tag="OQQ72_000612"
                     /gene_synonym="citB"
     CDS             complement(24715..25395)
                     /gene="dpiA"
                     /locus_tag="OQQ72_000612"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HCS2010455.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID
                     PLTLNAVRKLFKEPGVQHTTETVAQALTISRTSARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(25364..27021)
                     /gene="dpiB"
                     /locus_tag="OQQ72_000613"
                     /pseudo
     CDS             complement(25364..27021)
                     /gene="dpiB"
                     /locus_tag="OQQ72_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
     gene            27370..28428
                     /gene="citC"
                     /locus_tag="OQQ72_000614"
     CDS             27370..28428
                     /gene="citC"
                     /locus_tag="OQQ72_000614"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HCS2010456.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKTPA"
     gene            28443..28739
                     /gene="citD"
                     /locus_tag="OQQ72_000615"
     CDS             28443..28739
                     /gene="citD"
                     /locus_tag="OQQ72_000615"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS2010457.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLARYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            28736..29644
                     /gene="citE"
                     /locus_tag="OQQ72_000616"
     CDS             28736..29644
                     /gene="citE"
                     /locus_tag="OQQ72_000616"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS2010458.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            29655..31187
                     /gene="citF"
                     /locus_tag="OQQ72_000617"
     CDS             29655..31187
                     /gene="citF"
                     /locus_tag="OQQ72_000617"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS2010459.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQEQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            31191..31741
                     /gene="citX"
                     /locus_tag="OQQ72_000618"
                     /pseudo
     CDS             31191..31741
                     /gene="citX"
                     /locus_tag="OQQ72_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
     gene            31716..32593
                     /gene="citG"
                     /locus_tag="OQQ72_000619"
                     /pseudo
     CDS             31716..32593
                     /gene="citG"
                     /locus_tag="OQQ72_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
     gene            32644..34107
                     /gene="citT"
                     /locus_tag="OQQ72_000620"
     CDS             32644..34107
                     /gene="citT"
                     /locus_tag="OQQ72_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/succinate antiporter CitT"
                     /protein_id="HCS2010460.1"
                     /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPNGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDE
                     LKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITR
                     YNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAH
                     YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY
                     GCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN"
     gene            34218..35024
                     /gene="rna"
                     /locus_tag="OQQ72_000621"
     CDS             34218..35024
                     /gene="rna"
                     /locus_tag="OQQ72_000621"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HCS2010461.1"
                     /translation="MKAFWRNAALLAVSLLPFSSANAVALQAKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPSNCGKTFVIDKVGY"
     gene            35254..35664
                     /gene="rnk"
                     /locus_tag="OQQ72_000622"
     CDS             35254..35664
                     /gene="rnk"
                     /locus_tag="OQQ72_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HCS2010462.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(35895..37133)
                     /locus_tag="OQQ72_000623"
     CDS             complement(35895..37133)
                     /locus_tag="OQQ72_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HCS2010463.1"
                     /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRMQQYA
                     ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD
                     HHPYRLSFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET
                     VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS
                     AEEAQKAVSGLVNAMPGGTI"
     gene            37354..37782
                     /gene="uspG"
                     /locus_tag="OQQ72_000624"
     CDS             37354..37782
                     /gene="uspG"
                     /locus_tag="OQQ72_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HCS2010464.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLDRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(37903..39468)
                     /gene="ahpF"
                     /locus_tag="OQQ72_000625"
     CDS             complement(37903..39468)
                     /gene="ahpF"
                     /locus_tag="OQQ72_000625"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HCS2010465.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(39639..40202)
                     /gene="ahpC"
                     /locus_tag="OQQ72_000626"
     CDS             complement(39639..40202)
                     /gene="ahpC"
                     /locus_tag="OQQ72_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HCS2010466.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            40574..>40980
                     /gene="dsbG"
                     /locus_tag="OQQ72_000627"
     CDS             40574..>40980
                     /gene="dsbG"
                     /locus_tag="OQQ72_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415137.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HCS2010467.1"
                     /translation="MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGM
                     KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRME
                     QSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA"
BASE COUNT        10180 a        10480 c        10071 g        10249 t
ORIGIN      
        1 tccccacagc acatagcggt ttgggcaacg aattgggtat aaatcaaccc tctctccgag
       61 ccaccagcaa ttaatgcttt ccactcttca ggggaagagc gatgccatgt cagatataag
      121 ccagctaaat cattggcatg accatcatca gtcatctgat aaatagtctg aattaaatca
      181 tcacgattat ttattcccca ggatgatgag agatcgaatt cttttatacc ggtatacatt
      241 tttggcgagt catgcgcggg tttgcaaccc tgattaagta tttccatggg cgcagaaagc
      301 gcaaaaagaa gatattgttc ttccttattc atttgttaat aatcccttaa gtgcattaac
      361 tgactacttt tttatattac ttgccgggct ttccgcacat taacgtcgac tgtcacccga
      421 acagatggag tattttccct atcaaaccgg caaagataaa aatgtagaaa ataattttga
      481 tgacgcccag acagcccggc ccaccatcgt caacgggcat tggctgcggt tgcggctccg
      541 gttcaacagt ttgcttctcg gtaaaattcg ccgcctgaat taataatcga cgaataatta
      601 atgcttccag tggacaacga tcttctgcat caagacggct tacgatcggc attaatgatt
      661 cttctgtcgg ttggctggcc tgcactaatt gtttggcaac taaatataat ggccataaga
      721 gatgttctgt atcacgcgtg agtgagatcc gcggcttacg tcctttgtgc aaaaccatct
      781 cgaccagtga acgccccagc gcagagagtt tttcatcgct gagtatttcg tataaatgaa
      841 aacgcgtacg ggcgctgtcg ccggggacat aaagtagctg tttaccctga tcgttaacca
      901 gttcacgagc ttcaatcatc atcaccacta acgggtaata atcgacccga tgctgacggc
      961 accattgcaa tattaaagca tccgcctggg tggagggata ctcgcgccag tagtcacaaa
     1021 gttctgccag caagctttcg ccttctccac aatagacgcg ttgcgcgtat tcataataac
     1081 gcgcatcttc attatcaggt tcagcttccc gccacgaccg ggcgtaatcc agaagttcgg
     1141 ggatatccag gcgacctgcg ctataccagc ggagtaaatt tctgtgcagt tttgcatcat
     1201 cggggatgat cactgcgcga tgttgcgcta aatacaatgt cagccattct ggatgcgatg
     1261 accaaatccg agcgaacatt tggtaaaaat cgatggtgtc attttgcacg gcaacgggca
     1321 gatgcagaat ggtctggaag ttaaaaacat tccccttcgc aatggcatat aaaaaggatt
     1381 ccagttcttc ttcgtctatt tccccgacgt tttcctcctg caaccaccgc aatctttctg
     1441 ctaataacac cacgcactcg aaggataaat gggcagtgtt catggcgatt gtgcacagcg
     1501 accagcgtaa ttcatcaatc tcttccatcg agcaataatt taattgctga atgaatcgct
     1561 gccaggcgga gggcagaaaa cgttcgctat cagaggcaag taacgcgcga aaggcgagca
     1621 gaatttcatg ttctgctacc tcatattctt ctggttgcca aacagattta gcaggcgact
     1681 gcgcaatccg tagcgcctcc tcatacgcct gacgaagttg tttaaaaccc tgcggttcgg
     1741 tttctggatg aaaggacggt aacagcgcca gataagcgcg gcggataata tcgacgtcag
     1801 tcgtttcctc tatatcgagg atcttccagc aatttttcat aagtcgctca tatccttaag
     1861 cgtttccggg catgtggggt agtcagccag tggttgccag gacaaggtag ggtaatacgc
     1921 atcatcactg gcaaataatt gataaaacat atcattgccg gaatcgtcgt attctttacg
     1981 cgctaagaat tcgcgtaata aaggcagatg atcatcttcg ggagactgcc aatattgccg
     2041 accaaaggta taaccggcaa agtattgccg ccagttacta taataacgta gagcccgtag
     2101 atgaatacgc gactggatcc atagactttc ttcttcactc aaccagttat taagtacgcc
     2161 cattcgactt aaaaaaccca tccggacata atcccatgct ttaattcctc cctcaccaca
     2221 gcattcggct gtgctggcga caaattgcgc ataagcctga ccttgctcat ttaattcagc
     2281 aagatagtca cgccattcac atggagaata acgaaaccag cggtgataaa accctgccaa
     2341 ccgagcggca tgaccgttct cgatcattcg gtgaattgtg cgcagcaggt catcacggtc
     2401 atcaattccc catgaggaag aaaggtcaaa aaagcatgta cctaaataca ttttggggga
     2461 tgaatgcgaa ggtaaacagc attcattgcg tatttccatc ggagtggaaa gtgcaaacaa
     2521 tattttttgc gaccccatgt ccatataatt tatccttaaa cattcattta atgaatgtaa
     2581 actacatttc gagactcagt tatttatact tttctgacgc gacataatac gcataaaata
     2641 aggcttacgc aaaaatggaa cacataaaat ataatatgtt ttatctacaa ccataaggaa
     2701 atgataatga tttttacgtc aagttgctgc gataatttat caatagatga gattatcgaa
     2761 cgtgctgaaa aaggcgattg cgaggctcaa tatattgttg ggttttatta taatcgcgat
     2821 agcgcaattg actctccgga cgacgaaaag gccttttact ggctgaagct ggccgccgag
     2881 caaggtcatt gtgaagcaca atattcctta ggacaaaagt atactgagga taaaagccgt
     2941 cataaagata atgagcatgc catcttttgg ctgaaaaaaa ctgccctaca aggccatact
     3001 ttcgcttcca acgcccttgg ctggatactg gatcgtggag aagaccccaa ttataaagaa
     3061 gcggttgtct ggtatcagat agccgcggag agcggaatgt cttatgcgca aaataatctt
     3121 gggtggatgt acagaaatgg caacggagtc gcaaaagact atgcgctggc atttttctgg
     3181 tacaaacaag ctgcattaca aggccatagt gacgcgcaaa acaatctggc cgatctttat
     3241 gaagacggaa aaggcgttgc tcaaaacaag acactcgccg cattctggta tttgaaaagc
     3301 gcacagcagg gtaatcggca cgcccagttt caaattgcat gggattataa cgctggcgaa
     3361 ggggtggacc aggactataa gcaagcgatg tactggtatc tgaaggctgc cgctcaggaa
     3421 agcgtcggcg cttacgtcaa catcggttat atgtataaac acggacaagg cgttgagaaa
     3481 gattatcagg ctgcctttga atggtttacg aaagccgctg aatgcaatga cgccactgcc
     3541 tggtataacc tggccattat gtatcactac ggagaaggaa gacctgtcga tctccgacag
     3601 gctctcgacc tgtatcgtaa agttcagtca tccggaacca gagatgtcag tcaggaaatt
     3661 cgtgagactg aagatttact gtagagataa aaacaagggc cggggaattt cattcggccc
     3721 atattctctt tattgctgtg cgaaatcaga ctattacggc tcaaacgggc gtctctggaa
     3781 ctggtcatga ccacatttcg ggcatagcgt cagcacttcc ggtgtgtaga tcgggagatg
     3841 gaagtgacat ttctcgcaga ccagatttcc cagcccgacc acttctccgc tgtgataaac
     3901 cccatgatga ttgaggtcct ggaaaacttc gcgccattca agctgcgttt tatcggtgat
     3961 atctgccagc tcctgccata agctttcttt aatcacccgc ataaagacgc tgtcagattc
     4021 ttctttcagg ctctcttcat agctcatggc gaactcttcc aggtcacgtc ttacagctcg
     4081 cgtcagctca tcgacctcgg ttcgcgttaa ctcccctgtt tttattacgc gctcgcgcgc
     4141 ctgttccacc agtgcgtcga tatcacgttc gccattgcgc aggcgttcgc tcagtgacgc
     4201 gaccagttca cggtaatatt gagcaacctt gttcatcgtt tcatctcccg ggtcgttaac
     4261 tgactataat aatagacgtt ctttgttcct tgctttgcta atacgcccac aaactctgta
     4321 aattaatgta tgaataatcc gggcatcatt tcaacgtcga gtgcgcgaaa ggctgttttg
     4381 acgcggacgt ttgggctatg ctatgcggat ctgaaaaacc acctcaacgc tacatttgta
     4441 gccgtattga aaacaggacc actggctgcc atgcaagagc aataccgccc ggaagagata
     4501 gaatccaaag tacagcttca ttgggatgag aagcgcacat ttgaagtaac cgaagacgag
     4561 agcaaagaga agtattactg cctgtctatg cttccctatc cttctggtcg actacacatg
     4621 ggccacgtac gtaactacac catcggtgac gtgatcgccc gctaccagcg tatgctgggc
     4681 aaaaacgtcc tgcagccgat cggctgggac gcgtttggtc tgcctgcgga aggcgcggcg
     4741 gtgaaaaaca acaccgctcc ggcaccgtgg acgtacgaca acatcgcgta tatgaaaaac
     4801 cagctcaaaa tgctgggctt tggttatgac tggagccgcg agctggcaac ctgtacgccg
     4861 gaatactacc gttgggaaca gaaattcttc accgagctgt ataaaaaagg cctggtatat
     4921 aagaagactt ctgcggtcaa ctggtgcccg aacgaccaga ccgtactggc gaacgaacaa
     4981 gttatcgacg gctgctgctg gcgctgcgat accaaagttg aacgtaaaga gatcccgcag
     5041 tggtttatca aaatcactgc ttacgctgac gagctgctca acgatctgga taaactggat
     5101 cactggccag acaccgttaa aagcatgcag cgtaactgga tcggtcgttc cgaaggcgtg
     5161 gagatcacct tcaacgttaa cgactatgac aacacgctga ccgtttacac tacccgcccg
     5221 gacaccttta tgggttgtac ctacctggcg gtagctgcgg gtcatccgct ggcgcagaaa
     5281 gcggcggaaa ataatcctga actggcggcc tttattgacg aatgccgtaa caccaaagtt
     5341 gccgaagctg aaatggcgac gatggagaaa aaaggcgtcg atactggctt taaagctgtt
     5401 cacccattaa cgggcgaaga aattcccgtt tgggcagcaa acttcgtatt gatggagtac
     5461 ggcacgggcg cagttatggc ggttccgggt cacgaccagc gcgactacga gtttgcctct
     5521 aaatacggcc tgaacatcaa accagttatc ctggctgctg acggctctga gccagatctt
     5581 tctcagcaag ccctgactga aaaaggcgtg ctgttcaact ctggcgaatt caacggtctt
     5641 gaccatgaag cggccttcaa cgccatcgcc gataaactga ctgcgatggg cgttggcgag
     5701 cgtaaagtga actaccgcct gcgcgactgg ggtgtttctc gtcagcgtta ctggggcgcg
     5761 ccgattccga tggtgacgct ggaagacggt accgtaatgc cgaccccgga cgaccagctg
     5821 ccggtgatcc tgccggaaga tgtggtgatg gacggcatta ccagcccgat taaagcagat
     5881 ccggagtggg caaaaactac cgttaacggt atgccagcgc tgcgtgaaac cgacactttc
     5941 gacaccttta tggagtcctc ctggtactat gcgcgctaca cttgcccaga gtacaaagaa
     6001 ggtatgctgg attccgaagc ggctaactac tggctgccgg tggatatcta cattggtggt
     6061 atcgaacacg ccattatgca cctgctctac ttccgcttct tccacaaact gatgcgtgat
     6121 gcaggcatgg tgaactctga cgaaccagcg aaacagttgc tgtgtcaggg tatggtgctg
     6181 gcagatgcct tctactatgt tggcgaaaac ggcgaacgta actgggtttc cccggttgat
     6241 gctatcgttg aacgtgacga gaaaggccgt atcgtgaaag cgaaagatgc ggcaggccat
     6301 gaactggttt ataccggcat gagcaaaatg tccaagtcga agaacaacgg tatcgaccca
     6361 caggtgatgg ttgaacgtta cggcgcggac accgttcgtc tgtttatgat gtttgcttct
     6421 ccggctgata tgactctaga atggcaggaa tccggtgtgg aaggggctaa ccgcttcctg
     6481 aaacgtgtct ggaaactggt ttacgagcac acagcaaaag gtgatgttgc ggcactgaac
     6541 gttgatgcgc tgactgaaga tcagaaagcg ctgcgtcgcg atgtgcataa aacgatcgct
     6601 aaagtgaccg atgatatcgg ccgtcgtcag accttcaaca ccgcaattgc ggcgattatg
     6661 gagctgatga acaaactggc gaaagcacca accgatggcg agcaggatcg cgctctgatg
     6721 caggaagcgc tgctggccgt tgtccgtatg cttaacccgt tcaccccgca catctgcttc
     6781 acgctgtggc aggaactgaa aggcgaaggc gatatcgaca acgcgccgtg gccggttgct
     6841 gacgaaaaag cgatggtgga agactccacg ctggtcgtgg tgcaggttaa cggtaaagtc
     6901 cgtgccaaaa tcaccgttcc ggtggacgca acggaagaac aggttcgcga acgtgctggc
     6961 caggaacatc tggtagcaaa atatcttgat ggcgttaccg tgcgtaaagt gatttacgta
     7021 ccaggtaaac tcctcaatct ggtcgttggc taagcgcggg aggaagcgtg cgatatctgg
     7081 caacattgtt gttatctctg gcggtgttaa tcaccgccgg gtgtggctgg catctgcgtg
     7141 ataccacgca ggttccttcc actatgaagg tcatgatcct ggactcaggc gatccgaacg
     7201 ggccattaag ccgtgcggtg cgtaaccagt tacgtctgaa tggtgtcgag ttgcttgata
     7261 aagaaaccac gcgtaaggac gttccatccc tgcgtttggg taaagtgagc atcacgaaag
     7321 ataccgcatc ggtattccgt aacggtcaaa cagcagagta tcagatgatc atgacggtga
     7381 atgcgaccgt gttgatcccc ggccatgata tctacccgat tagcgccaaa gtcttccgtt
     7441 cgttctttga taacccgcaa atggcgttag cgaaagataa cgaacaagac atgatcgtaa
     7501 aagagatgta cgaccgtgct gccgaacagc tgattcgtaa gctgccaagc atccgtgctg
     7561 cggatattcg ttccgacgaa gaacagacgt cgaccacaac ggatactccg gcaacgcctg
     7621 cacgcgtctc caccacgctg ggtaactgat gattcggttg tacccggaac aactccgcgc
     7681 gcagctcaat gaagggctgc gcgcggcgta tcttttactt ggtaacgatc ctctgttatt
     7741 gcaggaaagc caggacgctg ttcgtcaggt agctgcggca caaggattcg aagaacacca
     7801 cactttttcc attgatccca acactgactg gaatgcgatc ttttcgttat gccaggctat
     7861 gagtctgttt gccagtcgac aaacgctatt gctgttgtta ccagaaaacg gaccgaatgc
     7921 ggcgatcaat gaacaacttc tcacactcac cggacttctg catgacgacc tgctgttgat
     7981 cgtccgcggt aataaattaa gcaaagcgca agaaaatgcc gcctggttta ctgcgcttgc
     8041 gaatcgcagc gtgcaggtga cctgtcagac accggagcag gctcagcttc cccgctgggt
     8101 tgctgcgcgc gcaaaacagc tcaacttaga actggatgac gcggcaaatc aggtgctctg
     8161 ctactgttat gaaggtaacc tgctggcgct ggctcaggca ctggagcgtt tatcgctgct
     8221 ctggccagac ggcaaattga cattaccgcg cgttgaacag gcggtgaatg atgccgcgca
     8281 tttcacccct tttcattggg ttgatgcttt gttgatggga aaaagtaagc gcacattgca
     8341 tattcttcag caactgcgtc tggaaggcag cgaaccggtt attttgttgc gcacattaca
     8401 acgtgaactg ttgttactgg ttaacctgaa acgccagtct gcccatacgc cactgcgtgc
     8461 gttgtttgat aagcatcggg tatggcagaa ccgccggggc atgatgggcg aggcgttaaa
     8521 tcgcttaagt cagacgcagt tacgtcaggc cgtgcaactc ctgacacgaa cggaactcac
     8581 cctcaaacaa gattacggtc agtcagtgtg ggcagagctg gaagggttat ctcttctgtt
     8641 gtgccataaa cccctggcgg acgtatttat cgacggttga tatgaaatct ttacaggctc
     8701 tgtttggcgg cacctttgat ccggtgcact atggtcatct aaaacccgtg gaaacgctgg
     8761 cgaatttgat tggtctgacg cgggtcacaa tcatccctaa taatgttcct ccgcatcgtc
     8821 cccagccgga agcgaacagc gtgcagcgta aacacatgct tgaactggcg attgccaaca
     8881 agccattatt tactcttgat gaacgcgagc taaagcgcaa tgccccctct tacactgcgc
     8941 aaacactgaa agagtggcgg caggaacaag gaccggacgt gccgctggcg tttattattg
     9001 gtcaggattc actgctgacc tttccgacct ggtacgaata cgaaacgata ctcgacaatg
     9061 cacatttgat cgtctgtcgg cgtccaggtt acccacttga aatggcgcaa ccgcaatacc
     9121 agcaatggct ggaagatcat ttgacacata accaggaaga tcttcacctt cagcctgccg
     9181 gtaaaattta tctggctgaa acgccgtggt ttaacatctc ggcgaccatc atccgcgaac
     9241 gtttgcaaaa cggtgaatcg tgtgaggatt tattgccgga accggtactg acttacatta
     9301 accaacaagg cttgtatcgc tgatacctgt cgttacggag ggcatgatgc gactgtggtt
     9361 aattcgtcat ggtgaaacgc aagcgaatat cgatggtctt tacagcggtc atgcgccccc
     9421 cccctgaccg cgcgcggtat tgagcaagcg caaaatctgc atacgctgct acatggtgtt
     9481 tcctttgatc tggttttatg cagtgaactg gaacgggcac agcataccgc gcgactggtt
     9541 ctcagtgacc gccagctccc cgtgcaaatc atccctgaac tcaacgaaat gttttttggc
     9601 gactgggaga tgcgacatca tcgcgacctc atgcaagaag atgccgaaaa ctatagcgcg
     9661 tggtgcaatg actggcagca tgcaatcccc acgaacggtg aaggatttca ggcattttcg
     9721 caacgtgtgg aacgctttat cgcaaggctt agtgaatttc agcactatca gaatatttta
     9781 gtcgtcagcc atcagggtgt actgagtctg ttaatcgccc gtttaattgg catgcctgcc
     9841 gaggctatgt ggcattttcg cgttgaccag gggtgttgga gcgccattga tatcaaccaa
     9901 aaattcgcga cgctacgcgt cctcaatagc cgtgccatcg gggtcgataa tgcatgactt
     9961 ttctgttttt ttacgggtaa gccgcaacga ccattgacag acccgggcag gctgatattc
    10021 tccgcagcca gacttttttc gccagacacg actttgtaga aattgtttta caaaaatggc
    10081 gatgcaatct gcggcgcggg gtgggatgat agcccacttt cgaaagccga ttcggcgaca
    10141 attgtcccga aatcgcctct ggttcaggta tactgacaga ccatttttat ctatttgatt
    10201 cacccagggg gaaaacttgc agggtaaagc actccaggat tttgttatcg acaaaattga
    10261 tgacctcaaa ggtcaggaca tcatcgcctt agacgttcaa ggcaaatcca gcatcaccga
    10321 ctgcatgatc atctgtacgg gtacgtccag ccgtcatgtt atgtccattg ctgaccacgt
    10381 tgtgcaggag tctcgcgcag cgggcctgtt accgctcggc gtagaaggtg aaaacagcgc
    10441 cgactggatt gtcgtggatt tgggcgatgt gattgtccat gtcatgcagg aagagagccg
    10501 tcgcctgtat gaactggaaa aactctggag ttaatgcgtg aagctgcaac ttgtcgccgt
    10561 gggaacgaaa atgccggact gggtacaaac cggttttacc gagtacctgc gtcgttttcc
    10621 gaaagatatg cccttcgagc tgattgaaat tccggccgga aaacgcggca agaatgcgga
    10681 catcaagcgc atactcgaca aagagggtga gcagatgttg gcggccgcag gcaaaaaccg
    10741 cattgtcacc ctcgatattc caggcaagcc ctgggatacg ccgcagttag ccgctgagct
    10801 ggaacgctgg aagctggatg gtcgcgacgt cagtctactg attggcgggc ctgaagggtt
    10861 gtcgcctgcc tgtaaagcgg cggcggagca gagctggtcg ctgtcggcgc ttaccctccc
    10921 ccatccgctg gttcgcgtgc tggtcgcaga gagtctgtac cgggcgtgga gcatcaccac
    10981 caaccatcct tatcaccgtg agtgataagg gagctttgag tagaaaacgc agcggatgaa
    11041 actacagaac tcttttcgcg actatacggc agagtccgcg ctgtttgtgc gccgggcgct
    11101 ggtcgccttt ttggggattt tgctgctgac cggcgtgctt atcgccaacc tgtataatct
    11161 gcaaattgtt cgctttaccg actaccagac ccgctctaat gaaaaccgca ttaagctggt
    11221 gcctatcgcg cccagccgcg gcattattta cgaccgtaat ggtatccctc tggccctcaa
    11281 ccgcactatc taccagatag aaatgatgcc agagaaagtc gataacgtgc agcaaacgct
    11341 ggacgctttg cgcagcgtgg ttgatctgac cgatgacgat attgctgcat tccgaaaaga
    11401 gcgcgcacgt tcacaccgtt tcacctctat tcccgtgaaa actaacctga ccgaagtaca
    11461 agtagctcgc tttgccgtca atcagtaccg ttttccgggg gttgaagtta aaggctataa
    11521 acgtcgttac tatccttacg gttcggcgtt gacccacgtc atcggctatg tgtcgaaaat
    11581 caacgataaa gacgtcgaac gcctgaataa tgacggcaaa ctggccaact atgcggcaac
    11641 gcatgatatc ggtaagctgg gcattgagcg ttactatgaa gacgtgctgc acggtcagac
    11701 cggttatgaa gaggttgaag ttaacaaccg tgggcgtgtt atccgccagt taaaagaagt
    11761 accaccgcaa gccggacacg atatttacct gacgctggat ctcaaactcc agcaatatat
    11821 tgaaacgctg ctggcgggta gccgcgcagc tgtggtagtc accgatccgc gtacaggtgg
    11881 ggtgctggcg ctggtttcca cgcctagtta tgacccaaac ttgtttgttg acggtatctc
    11941 cagcaaagat tattccgcct tgttgaacga cccgaataca ccgctggtga accgcgccac
    12001 acagggggtt tatcctcccg cgtctacagt taaaccctat gtggcggttt cggcattgag
    12061 cgccggggtg atcacgcgca atacgacgct gtttgaccca ggctggtggc aactgccagg
    12121 ttcggaaaaa cgttatcgtg actggaaaaa atggggccac gggcgtctga atgtcacaag
    12181 atcgctggaa gaatctgcgg ataccttctt ctatcaggtg gcctacgata tggggatcga
    12241 tcgcctctcc gaatggatgg gtaaattcgg ttatggtcat tacaccggta tcgacctggc
    12301 ggaagaacgt tccggcaaca tgcctacccg cgaatggaaa cagaaacgct ttaaaaaacc
    12361 gtggtatcag ggtgacacca ttccggttgg tatcggtcag ggttactgga cagcgacccc
    12421 aatccagatg agtaaggcac tgatgatcct gattaatgac ggtatcgtga aggttccgca
    12481 tttgctgatg agcaccgccg aagacggcaa acaggtgcca tgggtacaac cgcatgaacc
    12541 gcccgtcggc gatattcatt ccggttactg ggagctggcg aaagacggta tgtacggtgt
    12601 tgctaaccgc cctaacggta cgacgcataa atactttgcc agcgcaccgt acaaaattgc
    12661 ggcgaaatct ggtaccgctc aggtcttcgg tctgaaagcg aacgaaacct ataatgcgca
    12721 caaaattgcc gagcgtttac gtgaccacaa actgatgacc gcctttgcgc catacaacaa
    12781 tccgcaagtg gctgtcgcca tgattctgga gaacggcggc gcgggtccgg cggttggtac
    12841 gctgatgcgt cagatcctcg accacattat gctgggtgat aacaacaccg atctgcctgc
    12901 ggaaaatcca gcggttgccg cagcggagga ccattaatca tgacggataa tccgaataaa
    12961 aaaacattct gggataaagt ccatctcgat cccacaatgc tgctgatctt actggcattg
    13021 ctggtttaca gcgccctagt tatctggagc gccagcggtc aggatattgg catgatggag
    13081 cgtaaaatcg gccaaatcgc gatgggtctg gtcatcatgg tggtgatggc gcaaattcct
    13141 ccacgcgttt atgaaggctg ggccccctat ctctatatca tctgtattat tttgctggtg
    13201 gcggtagatg ctttcggtgc catctctaaa ggtgctcaac gctggctgga cctcggtatt
    13261 gttcgttttc agccgtcgga aattgccaaa atagccgtac cactgatggt tgcgcgcttt
    13321 atcaaccgcg acgtttgccc accgtcgttg aagaacacag gcatcgcgct ggtgctgata
    13381 tttatgccca cgctgctggt ggctgcacag cctgacctgg gaacatcaat cctcgttgcg
    13441 ctttccggtc tgtttgtact gttcctctct ggccttagct ggcgtctgat tggcgtcgca
    13501 gtagtgctgg tggcggcgtt cattcctatt ctgtggttct tcctgatgca tgattaccag
    13561 cgccagcgcg taatgatgct cctagacccg gaatcagacc cactcggcgc gggctatcac
    13621 attattcagt ctaaaattgc tattggctcc ggcggattac gcggcaaagg ctggctgcat
    13681 ggcactcagt cacaacttga atttctaccc gaacgccata ccgactttat cttcgcggta
    13741 ctggcggaag agctgggatt agtgggcatt ttgattctgc tcgctctcta cattctgctg
    13801 atcatgcgcg ggctgtggat agccgccaga gcgcaaacca cctttggtcg cgtcatggct
    13861 ggcggcttaa tgctgatatt attcgtttat gtcttcgtaa atattggtat ggtaagcggt
    13921 attctgccgg ttgtaggggt tccgctccca ctggtcagtt atggaggatc agcgctaatt
    13981 gtgctgatgg ctgggttcgg gattgtaatg tcaatccaca cccacaggaa aatgttgtcg
    14041 aaaagcgtgt aagaggtgcg caatgcgtaa gcagtggctc gggatctgca tcgcggcagg
    14101 aatgctcgcg gcatgtacaa gcgatgatgg tcagcaacag acggtaagtg taccgcagcc
    14161 tgcggtatgt aacggcccca tagttgaaat tagcggggcg gacccgcgtt tcgaaccact
    14221 gaacgcgacg gcaaatcagg attaccagcg cgacggtaaa agctacaaaa tcgtgcagga
    14281 tccgtctcga tttagccagg cgggactggc ggcaatctat gatgccgaac caggcagtaa
    14341 cctgacggcc tctggcgaag ctttcgatcc gacacagctg acggcggccc atccaacgct
    14401 tccgatcccc agctacgcca gaatcactaa cctggctaac gggcgaatga tcgtggtgcg
    14461 cattaatgat cgcggccctt acggcaacga ccgcgttatt tcgctttctc gcgcggcagc
    14521 tgaccgtctt aacacgtcaa acaacaccaa agttcgtatc gatccgatta ttgtcgccca
    14581 ggatggttcg ctttctggtc ctggtatggc ttgtaccaca gtcgccaaac agacttacgc
    14641 cctgcctgca cctcccgatt taagcggtgg cgcgggaaca agttcagtgt ctggcccgca
    14701 gggtgacatt cttccggtca gtaattcgac gctaaaaagc gaagatccga ccggcgcgcc
    14761 ggtaaccagt agcggtttcc tcggcgcacc aacgacctta gcgcctggtg tactggaagg
    14821 cagcgaaccg acgcctgcgc cacagcccgt tgttacagct ccgtcgacaa cgcctgcaac
    14881 ctcgcctgca atggtgacac cgcaagccgc ctcgcaaagc gccagcggca actttatggt
    14941 gcaagtcggg gccgttagcg atcaggctcg tgcgcaacag taccaacagc aactgggaca
    15001 gaagttcggc gtccccggtc gcgtaactca aaatggcgcg gtctggcgga tccagcttgg
    15061 ccccttcgcc agcaaagccg aagccagtac cttgcagcaa cgtttgcaaa ccgaagccca
    15121 attacagtca tttattacca ccgcgcagta gcgtaaagca ggcatctgat gtgtcaattt
    15181 ctgtaaatga cgttaacaaa gtcacgcgga aagtcagatg cctgccggta gtgcatttgc
    15241 tatagtaggg cacttttttt aattccatca cggatgtcgt agttcagacc atgaatacca
    15301 ttttttccgc tcgtatcatg aagcgcctgg cgctcaccac ggctctttgc acagccttta
    15361 tctctgctgc acatgccgat gacctgaata tcaaaactat gatcccgggt gtaccgcaga
    15421 tcgatgcgga gtcctacatc ctgattgact ataactccgg caaagtgctc gccgaacaga
    15481 acgcagatgt ccgccgcgat cctgccagcc tgaccaaaat gatgaccagt tacgttatcg
    15541 gccaagcaat gaaagccggt aaatttaaag aaactgattt agtcactatc ggcaacgacg
    15601 catgggccac cggtaacccg gtgtttaaag gctcttcgct gatgttcctc aaaccgggca
    15661 tgcaggttcc ggtttctcag ctgatccgcg gtattaacct gcaatcgggt aacgatgctt
    15721 gtgtcgccat ggctgatttt gccgctggta gccaggacgc ttttgttggc ttgatgaaca
    15781 gctacgttaa cgccctgggc ctgaaaaaca cccacttcca gacggtacat ggtctggatg
    15841 ctgatggtca gtacagctcc gcgcgcgata tggcgctgat cggccaggcg ttgatccgtg
    15901 acgtaccgaa tgaatactcg atctataaag aaaaagaatt tacgtttaac ggtattcgcc
    15961 agctgaaccg taacggcctg ttatgggata acagcctgaa tgtcgacggc atcaaaaccg
    16021 gacacactga caaagcaggt tacaaccttg ttgcttctgc gactgaaggc cagatgcgct
    16081 tgatctctgc ggtgatgggc ggacgtactt ttaaaggccg tgaagccgaa agtaaaaaac
    16141 tgctgacctg gggcttccgt ttcttcgaaa ccgttaaccc actgaaagta ggtaaagagt
    16201 tcgcctctga accggtttgg tttggtgatt ctgatcgcgc ttcgttaggg gttgataaag
    16261 acatgtacct gaccattccg cgtggtcgca tgaaagatct gaaagccagc tatgtgctga
    16321 acagcagtga attgcatgcg ccgctgcaaa agaatcaggt cgtcggaact atcaacttcc
    16381 agcttgatgg caaaacgatc gagcaacgcc cgctggttgt gttgcaagaa atcccggaag
    16441 gtaacttctt cggcaaaatc attgattaca ttaaattaat gttccatcac tggtttggtt
    16501 gaaaattaaa cacttgaaag tgtaatttcc gtccccatat actaagcatc agtaaaaaaa
    16561 ctcccgcctt ctggcgggag ttgctattta attacgttac gccggagctg acatgaaaac
    16621 caaacttaac gaactgcttg aattccctac tccttttact tacaaagtta tggggcaggc
    16681 gttacctgag ctggttgatc aggtggttga agtggtacag cgccatgcgc caggtgacta
    16741 caccccaacg gtaaaaccaa gcagcaaagg caactaccac tcggtatcta tcactatcaa
    16801 cgccactcat atcgagcagg ttgaaatact gtatgaagaa ctgggcaaaa tcgatattgt
    16861 ccgcatggtt ctgtaactcg cttctccgtt acccggctcc tggtcgggta actcccctct
    16921 cctcgctgtg atatactttt cccccacttt tactcattct ccacggagat gccgttttgt
    16981 atcaggataa aattcttgtc cgccagctcg gtcttcagcc ttacgagcca atctcccagg
    17041 ctatgcatga attcaccgat acccgcgatg atagtaccct tgatgaaatc tggctggtcg
    17101 agcactatcc ggtattcacc caaggtcagg caggaaaagc ggagcacatt ttaatgccgg
    17161 gtgatattcc ggtgatccag agcgatcgcg gtgggcaggt gacttatcac gggccgggac
    17221 aacaggtgat gtatgtgttg cttaacctga aacgccgtaa actcggtgtg cgtgaactgg
    17281 tgaccttgct tgagcaaaca gtggtgaata ccctggctga actgggtata gaagcgcatc
    17341 ctcgggctga cgcgcctggt gtctatgtcg gggaaaagaa aatttgctca ctgggtttac
    17401 gaattcgacg cggttgttca ttccacggtc tggcattaaa cgtcaatatg gatctttcac
    17461 catttttacg tattaatcct tgtgggtatg ccggaatgga aatggctaaa atatcacaat
    17521 ggaaacccga agcgacgact aataatattg ctccacgttt actggaaaat attttagcgc
    17581 tactaaacaa tccggacttc gaatatatta ccgcttaatt ccatacatca atggcccaat
    17641 ttacactggg tcattactca taatacctgc taatgcttta catctccttc gcgtttgtat
    17701 attttcttta tcacttgcag aaatgcggtg ccacgccttg ctccgtaact caccccattg
    17761 attaacctat tgaaatagtt gattatggtg agcaaaagcg ttccgttcca attagacata
    17821 agattattgt aattttttaa atattatttt tccatgaata aaattggagt aagtgcgtgg
    17881 atagtaataa tcaaattgaa ccctgtttaa gcagaaagtc gtcagaaggt aaaccacaaa
    17941 tatttacaac cttacgaaat attgctctta accttctgac tatttttgaa gctgtatatg
    18001 tacataaagg gatcgttaat gcagcgaaag tgcttaatct gcccccctcg gcaatcagtc
    18061 agtctattca gaaactgcgc gttatattcc ctgacccatt gtttattcgc aaaggccaag
    18121 gtgtcactcc taccgcattt gcgatgcatc tacatgagta tatcagtcag ggccttgagt
    18181 ccattcttgg cgcgctggat atcgaaggaa gctatgataa gcaacgaacg ataactattg
    18241 cgaccactcc ctcggtcgga gccctggtcc ttcctgtcat ctatcgggcg attaaaactc
    18301 actatccgca gcttttactg cgcaacccgc ccatcagcga cgcggaaaac caactcagtc
    18361 agtttcaaac cgatctcatc atcgataaca tgttttgcac caatcgtacg gtgcaacatc
    18421 atgttctgtt caccgacaat atggtgttaa tttgccgcga gggaaatcca ctactctctt
    18481 tagaagatga cagagagact atcgacaacg ctgcgcatgt acttctgtta ccggaagagc
    18541 aaaatttcag cggtctgcgg cagagagttc aagaaatgtt tccggaccgg caaatcaatt
    18601 tcaccagcta caacattttg acaatcgctg cactggttgc caacagtgac atgttagcga
    18661 ttattcccag ccgtttttat aacctgttta gccgctgctg gccgctggaa aaactgcctt
    18721 ttccgtcctt aaataaggag caaatagatt tctctatcca ctacaacaaa ttcagcctgc
    18781 gtgatcccat cctgcacgga gtaatagatg ttatccgtaa tgcattttga aaaagtattg
    18841 ttacagccag atcacagcgc agaacgataa aatggcacaa tccaacaaca attttacatt
    18901 ttcgcgaccg ctttggctgc tttcaggtcc gtttcaatga tatactgcca gtcgttaatt
    18961 caaaaatagt tgataattac aacaatctat tgaattgaaa cgctttcctt cgtaattcgc
    19021 aactggaaca cgcacgctat gagtaaaccc attgtgatgg aacgcggtgt taaataccgc
    19081 gatgccgata agatggccct tatcccggtt aaaaacgtgg caatagagcg cgaagccctg
    19141 ctgcgcaagc cggaatggat gaaaatcaag cttccagcgg actctacacg tatccagggc
    19201 atcaaagccg caatgcgcaa aaatggcctg cattctgtct gcgaggaagc ctcctgccct
    19261 aacctggcgg aatgcttcaa ccacggcaca gcaacgttta tgatcctcgg cgctatttgt
    19321 acccgccgtt gtccgttctg tgatgttgcc cacggtcgcc cggtagctcc tgatgccaat
    19381 gaaccagtga aactggcgca gaccattgcc gatatggcgc tgcgttatgt ggttatcacc
    19441 tccgttgacc gtgatgacct gcgcgatggc ggtgcccagc actttgcgga ttgcattact
    19501 gccattcggg aaaaaagccc gcaaatcaaa attgaaactc tggtgccgga tttccgtggt
    19561 cgtatggatc gtgctctgga tattctgact gcaacgccac cagatgtgtt caaccataac
    19621 ctggaaaacg taccgcgtat ttaccgtcag gtacggcctg gggcagatta caactggtcg
    19681 ctgaagctgc tggaacgctt taaagaagcg catccggaaa tcccgaccaa gtctggtcta
    19741 atggtgggac tgggtgaaac caatgaagaa attattgagg taatgcgcga cctgcgccgt
    19801 catggtgtga cgatgttaac gctggggcaa tatttgcagc caagccgcca tcacctgccg
    19861 gttcaacgtt acgttagccc ggatgagttc gacgaaatga aagccgaagc gctggcgatg
    19921 ggctttaccc atgctgcatg cggtccgttt gtccgttctt cttaccacgc cgatttgcag
    19981 gcgaaaggga tggaagttaa gtaatcctgt aataattact tacatctgtc tgataaaaaa
    20041 cccgcttttt gaagcggttt ttttgtatcg aacaagatat tgagggagcg tcctgctcgc
    20101 cacgtcactc tttatgagag agcttttcag cctgaagatc aacgtctgcg ccttttttcg
    20161 ccgcagcatc atcatcattc atcgccttct tgaacccttt aatggccgct ccaaggtctc
    20221 cgcccagcgt acgtaacttc ttagtcccaa acagcagaac gaccagcgcc gcaactacta
    20281 gcagtttggt aatactaatc tcacccatag ataccttctt gacatataac cggcaacaga
    20341 acgcgcctta aaaaccagag aatattaacg gtcattcgac gcgcgcacac aatagcaatc
    20401 tgtaacaagg tgaatcaagc gccgagtaaa aaaacatcat aataattgcg gcggcgcaaa
    20461 gcgacggttg tttaagacgg gcagttgcgc gcgcacctga cgcacacgtt cgggcgtcac
    20521 ttccgccata atgagtgcag gcatttctga cgctgccgca atggtgacgc caaagggatc
    20581 tataatccgg ctttgcccga tatttttgtt cccgcactcg cccgccgcca ccatataaca
    20641 ggtggtatcc agcgcacgag cggcaagcaa cgttgaccag tgatgctctt tgagcggccc
    20701 gcgaacccag gcggcaggaa gtaccaggat ttcagctccc tgtaatgcct gtgccagcgc
    20761 cagctctgga aagcgtaagt cataacaggt catcagaccg accttcatcc cttccacctc
    20821 cagtaacgga gcgatttcat taccagcatc aacacggcgt gattcctgaa tggcaaatgc
    20881 atcatagaga tgcagtttgg cataacgggc gacgatgttt cctgcctgaa gtgccaccag
    20941 catattccat gcgcgccccg gcgttgaagg aacatgaatc gtcagaattg tcgtcatcat
    21001 gttacgttta ctttctcgcc gtaaacgtcc gaggaattcg ccttccagca gctgtgctga
    21061 tttaaccgat agatctgcat catgatcatc gcgtgccagc aatgcttccg gcaggacaaa
    21121 cagcgatacg tcgttttccg ccgcctgcgc catcaacgag gcacaaatct cagcgttctt
    21181 ttcccacaca gatgtaacag caaactgtcc tgcagcaacc agcattgcca cctcctgtca
    21241 gagtcgtaaa attcgccaac gacgattatt cggcgttaca cttatcactc atacaaatca
    21301 aatagcagga ttttgcagtg ttacaacttc ttttagcagt ttttattggc ggtggtacgg
    21361 gaagcgtggc gagatggctg ttaagtatgc gatttaaccc actgcatcag gcgattccgt
    21421 tggggacgct gacagcaaac ctgattgggg cattcatcat aggaatggga ttcgcatggt
    21481 tcagcaggat gacgaacatt gatccagtgt ggaaagtatt aatcaccacc ggattttgtg
    21541 gcggtctaac aaccttctca acattttcgg cagaagtggt gtttttgtta caagagggtc
    21601 gctttggctg ggcattactg aacgttttcg tcaaccttct ggggtctttt gccatgacag
    21661 cactggcttt ctggctgttt tcggcctcaa ccgcacacta aagacccaaa aaaaacccgc
    21721 tgattaagcg ggttttgaat tcttgctgac gtatcttaca gagcgattac gtttgcagca
    21781 gaagggcctt tggcaccgtt agtgatttcg aactctacgc gctgaccttc agcaagagtt
    21841 ttaaaaccat tagtctggat tgcagagaag tgtacgaaca cgtctttgct gccgtcttcc
    21901 ggagtaatga aaccgaatcc tttggactca ttaaaccact taacgttacc tttaatctta
    21961 gacatcaaaa ttacctttac atgaaaaata gacacaaatg ctgcgtcggt taccagtaca
    22021 ccaattgtgg tacgctttgt ccagtgcaac tttactaaaa agtgataaaa gtcgcgttat
    22081 ttttgatgtt acttatttta gctattgatt ttaaagaagt tactaaaact tcatttgtct
    22141 caaaactgaa agcgcatcca ggcaaagtac acattgccat tgttgtaggt acccggaatg
    22201 taggtcatct gaaaagtcac tgggccataa cccacggagg ccaatggcag tagaaccggg
    22261 agagggatgt aattccagtt atcgcgtgcc gttacgccag cggtgaatcc cagacctaaa
    22321 tgaaaatttt catccgccag cggtcgccag gtactttccc atccgtatcc ggcaatcggt
    22381 tcccatttgt tccacgagtc cttaaatgcc atggcataca ggccatgcca gtttcctttt
    22441 tcatcccaac gcgacaggcc aaaaccgcca ccccacggtc gctcgttata gcgatcggtt
    22501 ttttctttgt cgtaagcgaa acgtgcatgc caggtgatgg caggaatata taaatcataa
    22561 tgttcaggct gttgccaggt tggtgcaata ttttctctaa acgttgtcat ccactcatct
    22621 gcgttagcaa aaactttacc aacgctgatt aactgaataa aaacaaagga aaagatagcg
    22681 acatatttac tcacgttcat ttgtgaccat aaaacattta tcaaaaatct actactagca
    22741 tagcaaagct acaattaaca taaccttaat agacccaaca taaagaataa tctgaatagc
    22801 tgctctattt atttccgctt gttcaagtta aatatttccg cgcatcgatt aaagatgatg
    22861 cgtcgttttc tgcgatggga atagtcaaaa aagaaaaacc aagtcttttt tgatgacaaa
    22921 atgcaatcaa ggaaaaatta ttttattttt taacgagata caacaatcac cttaacaaag
    22981 tatataatat atatcgtcaa cctatgctca tattagatta ttttttgagc gcacagccgc
    23041 agctaacacc attgcaatta acaaatttgc atcaatccac catcaatttg cacacattat
    23101 tatgtgataa ttgccaaccg ctaaatatgc gttttgttat ctatgtataa aaacagtaac
    23161 ttcaatgtct taatggcagt ttttcttgat tttaatcagc attcatcgcc aatttattgg
    23221 gcatattttt tccttaagct ttaggaattt tttattattt actttggggc ctggagacag
    23281 gaaaaattat gctgacattc attgaactcc ttattggggt tgtggttatt gtgggtgtag
    23341 ctcgctacat cattaaaggg tattccgcca ctggtgtgtt atttgtcggt ggcctgttat
    23401 tgctgattat cagtgccatt atggggcaca aagtgttacc gtccagccag gcttcaacag
    23461 gctacagcgc cacggatatc gttgaatacg ttaaaatatt actaatgagc cgcggcggcg
    23521 acctcggcat gatgattatg atgctgtgtg gatttgccgc ttacatgacc catatcggcg
    23581 cgaatgatat ggtggtcaag ctggcgtcaa aaccattgca gtatattaac tccccttacc
    23641 tgctgatgat tgccgcctat tttgtcgcct gtctgatgtc tctggccgtc tcttccgcaa
    23701 ccggtctggg tgttttgctg atggcaaccc tatttccggt gatggtaaac gttggtatca
    23761 gtcgtggcgc agctgctgcc atttgtgcct ccccggcggc gattattctc gcaccgactt
    23821 caggggatgt ggtgctggcg gcgcaagctt ccgaaatgtc gctgattgac ttcgccttca
    23881 aaacgacgct gcctatctca attgctgcaa ttatcggcat ggcgatcgcc cacttcttct
    23941 ggcaacgtta tctggataaa aaagagcaca tctctcatga aatgttagat gtcagtgaaa
    24001 tcaccaccac tgctcctgcg ttttatgcca ttttgccgtt cacgccgatc atcggtgtac
    24061 tgatttttga cggtaaatgg ggtccgcaat tacacatcat cactattctg gtgatttgta
    24121 tgctgattgc ctccattctg gagttcctcc gcagctttaa tacccagaaa gttttctctg
    24181 gtctggaagt ggcttatcgc gggatggcag atgcgtttgc taacgtggtg atgctgctgg
    24241 ttgccgctgg ggtattcgct caggggctta gcaccatcgg ctttattcaa agtctgattt
    24301 ctatcgctac ctcgtttggt tcggcgagta tcatcctgat gctggtattg gtgattctga
    24361 caatgctggc ggcagtcacg accggttcag gcaatgcgcc gttttatgcg tttgttgaga
    24421 tgatcccgaa actagcgcac tcttccggca ttaacccggc gtatttgact atcccgatgc
    24481 tgcaggcgtc aaaccttggc cgtacccttt cgcccgtttc tggcgtagtc gttgcggttg
    24541 ccgggatggc gaagatctcg ccgtttgaag tcgtaaaacg cacctcggta ccggtgcttg
    24601 ttggtttggt gattgttatc gttgctacag agctgatggt gccaggaaca gcagcagcgg
    24661 tcacaggcaa gtaaatagta atgccggagg caagtttcct ccggctttat catgtcaccc
    24721 actgtggtat atgcgttgtg gtctgccaac tttgccgtga acaatttcag caataatcag
    24781 atggcggctg gcgcaatatt caagataacg tctggcagac gtgcggctga tggtcagtgc
    24841 ctgcgccacc gtttctgtcg tatgttgcac accaggctct ttaaacagtt ttcgcaccgc
    24901 gtttagcgtc aagggatcaa tgccggtcgg cagttcgtct ttaggttcac cgcgagcata
    24961 ggcattaaac atctcatcaa tttgcttctg gctggcgcta tcaatacttt ccagcatatg
    25021 tttacgctgg cggaaacggg ttagcgtttg ccccagccgt tcataggcaa tgggcttaat
    25081 gagataatca aatacaccac aacgtacggc ttcagacacc gtttccatat cgctggctgc
    25141 agtggtaaac accacgtcgc cgggataatg cgcctgcacc agttcatgca ataaattaat
    25201 ccctctgccg tcaggaagat agttatcgag caagattagc cccggcttaa aacgctcgat
    25261 catcattcgg gcctgcgcca ggtttcccgc cagtaatatc tgactgaatc cgggaatgtg
    25321 acgaatatat tccgcatgca tctctgccag cggcgtttcg tcctcaacga tcaatagggt
    25381 taatggagct gtcattaggt ttcactttcg gaatatagat tgaaaataag gtaccgcagg
    25441 gatcattatc ttcgagagtg ataacaccac cgcagcgcgt tacgtagctg gcaatcaagt
    25501 acaacccaat gccatgttca ccgggctcgt cagcacgcgt actgaccccc tgctcaaata
    25561 ttttgtctcg tagagactct ggaacgccgc agccctgatc ggcgacttca atcaccacat
    25621 catcgccttc atcgctgagg aataattcaa cgatcttgtt tccttcatcg ctacgcaggc
    25681 tggcttcgaa ggcgttatca agtaaattgc ccacaatggc tgcaaactcg gtgctatcca
    25741 gtcctggcgg cagttgcgaa agctggctac cggggacaat gatcattttt agccccagtt
    25801 cccgggcgcg ctgcacttta ccaaaaagca gccccgccac ctagcgatcg gcaaacgcct
    25861 cgcgcaggct gtcaataagc tgttgctggg cctgagactc cccctgcacc atcgccagca
    25921 cgcgatcata ctctttcatc tgcaacagac cattgagcgt cgacatccaa ttgagatgct
    25981 cgtgtcgcaa tgtacgaagg ctctcaacgt attgttttat ttgcgtcagt tgcgcattga
    26041 gggtggaaat ttcgtcttta ctgcgaaagc tgataatggc ccccagcaaa tcatcacctg
    26101 aacgaatagc ttcccgattg gcaataacgc tcagaccgtt aaagttagcc accatatcct
    26161 gacgtttttc atcaatctgt tcggtaaaga aatcggcggg cctgaccact tcagcaatgg
    26221 gtttacccaa ccattgccgt ccgggggaac tcagccccag catctttctt gcgttacgat
    26281 tgatggcggt aatgtaaccg tgcggatcca ccgcaatcag cccttcataa accgaactaa
    26341 acagcgcctc ttgctgacgg accacgcgtg cgatttgctt tggctccatg cccatcatct
    26401 gccgacggat atgcgcggcc aggaaccacg acagcaacat cagaatccct aacagcacga
    26461 caaacacacc tgccatcggt aataaaaact cagcccgcca gctatcgatt ttactcacca
    26521 ggtagccaat cgacaccacg ccgatgactt ttccatcgtc atcaaagatt ggcgttttgg
    26581 cgcgcatcgc catccccatt gaccctttcc cggtaatgaa gtagctctcc cctttctcca
    26641 gcgcgccctg tttggtgaac tgcataggat aaccaatttt ctccggatta ggatggtaaa
    26701 ggcggatcga gtgccggtcg ccatcaccac ataatcaaaa tcggtatctc tttgtaattt
    26761 gttagcgatg gtcgccagcc gtttgtagtc acgcgttttc accgcagaga tgacactgtc
    26821 attggaggca ataattttcg cctgattcat tgccatgtcg cgtacatgaa gcgttaaata
    26881 gtcctcaaaa ctggccgtaa aatattgcgc caaggctgca atgacaaata ttgagaacac
    26941 cagaatcagc aaaaagatac gcagcggaaa tgccagtctt tggaaaaatg caaactgttt
    27001 attctcgtta agctgcaaca ttgttttcct tgcgggttat cccgagcctc tttgacagat
    27061 gtaattaaaa tgttgaatca aaatacatag atattaatta tgatcgtggc aaattttatt
    27121 cattaaatca attaaatcac ttaaacctgc aggtcatttc gtaattacat taattaaaaa
    27181 acttaaacca ttaaataaat aaaaatttca cgccgaaata ctccttagga tgtatagcga
    27241 aaggagaaaa agatatacct cgatcacccc cctttctccc aagtgaaaat aaaaggttat
    27301 cagtttgcaa cattgaacaa cattcgttgc aaatcgataa caacatgcac cttcaggata
    27361 ctatttatta tgttcggcaa tgatattttc acccgcgtaa aacgttcaga aaataaaaaa
    27421 atggcggaaa tcgcccaatt cctgcatgaa aatgatttga gcgttgacac cacagtcgaa
    27481 gtatttatta ccgtaacccg cgatgaaaag cttatcgcgt gcggtggaat tgccggaaat
    27541 attattaaat gcgttgctat cagtgaatcc gttcgcggtg aaggactggc gctgacatta
    27601 gccactgaac tgataaacct cgcctatgag cggcacagca cgcatctgtt tatttatacc
    27661 aaaaccgaat acgaggcgct gttccgccag tgcggttttt ccacgctgac cagcgtaccc
    27721 ggcgtgatgg tgctgatgga aaacagcgcc acgcgactga aacgctatgc cgaatcgctg
    27781 aaaaaatttc gtcatccagg gaacaagatt ggctgcattg tgatgaacgc caatcccttt
    27841 acgaatggtc accgttatct gattcaacaa gctgcggcac agtgcgactg gttgcatctg
    27901 tttttagtca aagaagattc ttcacgcttc ccctatgaag accggctgga tctggtgtta
    27961 aaaggcaccg ccgatattcc acgcctgact gtgcatcgcg gctccgaata catcatctcc
    28021 cgcgctacgt tcccttgcta cttcattaaa gaacagagcg tcattaacca ttgttacacc
    28081 gaaattgatc tgaagatttt ccgtcagtac ctcgctcccg cactgggtgt aactcaccgc
    28141 tttgtcggta ctgaaccctt ttgtcgcgtt accgcccagt acaaccagga tatgcgctac
    28201 tggctgaaaa cgccgactat ctccgcaccg cccatcgaac tggttgaaat tgagcggctg
    28261 cgttaccagg agatgccgat atccgcttcc cgggtacgtc aactgctggc gaaaaacgat
    28321 ctcacggcta tcgcgccgct ggtccctgca gtcacgctgc attatttgca gaacctgctt
    28381 gagcactccc gccaggacgc ggcagctcgt caaaagaccc ccgcatgaga aacaggtgaa
    28441 aaatgaaaat aaaccagccc gccgttgcag gcacccttga gtctggggat gtgatgatac
    28501 gcatcgcccc actcgatacg caggatatcg acctgcaaat caacagcagc gttgagaaac
    28561 agtttggcga tgcaattcgc accaccattc tggacgttct cgcccgctac aacgtgcgcg
    28621 gcgtacagct gaatgtcgat gacaaaggca cactggactg cattttacgt gcacgactgg
    28681 aagccctgct ggcacgcgcc agcggtatcc cgactctgcc atgggaggat tgccaatgat
    28741 ttccgcttcg ctgcaacaac gtaaaactcg cacccgccgc agcatgttgt ttgtgcctgg
    28801 tgccaatgcc gcgatggtca gcaactcctt catctacccg gctgatgccc tgatgtttga
    28861 cctcgaagac tccgtggcat tacgtgaaaa agacaccgcc cgccgcatgg tttatcacgc
    28921 gctgcaacat ccgctgtatc gcgatattga aaccattgtg cgtgtcaacg cgctggattc
    28981 cgaatggggt gttaacgacc tggaagccgt cgttcgcggt ggtgcggacg ttgtgcgtct
    29041 gccgaaaacc gataccgctc aggatgttct ggatattgaa aaagagatcc tgcgtatcga
    29101 aaaagcctgt ggtcgtgaac ccggcagcac cggcctgctg gcggcgattg aatctccgct
    29161 gggcattacc cgcgcagtgg aaatcgctca cgcttccgag cgtttgatcg gtatcgccct
    29221 cggtgcagaa gactatgtgc gcaacctgcg tacagaacgc tccccggaag gaactgaact
    29281 gctgttcgca cgctgttcca ttttgcaggc cgcgcgctct gcgggtattc aggcgttcga
    29341 taccgtctat tccgacgcta acaacgaagc cggattcctg caagaagccg cccacatcaa
    29401 acagctgggc tttgacggca aatcgctgat caacccgcgt cagattgatc tgctgcacaa
    29461 cctctacgca ccgacccaga aagaagtgga tcacgcccgc cgcgtcgtag aagccgctga
    29521 agccgccgct cgcgaaggcc tcggcgtggt ttccctgaac ggcaagatgg tggacggtcc
    29581 ggttatcgat cgcgcccgtc tggtgctctc ccgtgcagaa ctttccggca tccgcgaaga
    29641 ataaggcaat caaaatgacg cagaaaattg aacaatctca acgacaagaa cgggtagcgg
    29701 cctggaatcg tcgcgctgaa tgcgatcttg ccgctttcca gaactcacca aagcaaacct
    29761 accaggctga aaaagcgcgc gatcgcaaac tgtgtgccaa cctggaagaa gcgattcatc
    29821 gctctggttt acaggacggc atgacggttt ccttccatca cgctttccgt ggcggtgacc
    29881 tgaccgtcaa tatggtgatg gacgtcatcg cgaagatggg ctttaaaaac ctgactctgg
    29941 cctccagctc cctgagtgat tgccatgcgc cgctggtaga acacattcgc cagggcgtgg
    30001 ttacccgcat ttatacctct ggcctgcgcg gtccactggc ggaagaaatc tcccgtggtc
    30061 tgctggcgga accggtgcaa atccactctc acggcggacg tgtgcatctg gtacagagcg
    30121 gcgaactgaa tatcgacgtg gctttcctcg gcgtcccatc ctgtgatgaa ttcggtaatg
    30181 ccaacggtta caccggtaaa gcctgctgtg gctccctcgg ctatgcaatg gttgatgccg
    30241 acaacgcaaa acaggtcgtg atgcttaccg aagaactgct gccttatccg cataatccgg
    30301 caagcattga gcaagagcag gttgatttga tcgtcaaagt tgatcgcgtt ggcgatgctg
    30361 caaaaatcgg cgctggtgcg acccgtatga ccactaaccc gcgcgaactg cttattgccc
    30421 gtagcgctgc ggatgtgatt gtcaactctg gctacttcaa agaaggtttc tccatgcaaa
    30481 ccggcaccgg cggcgcttcg ctggcggtaa cccgtttcct ggaagacaaa atgcgtagcc
    30541 gcgatattcg cgccgacttc gccctcggcg gtattactgc aacgatggtt gatctgcacg
    30601 aaaaaggtct gatccgcaaa ctgctggatg tgcagagctt tgacagccat gctgcgcaat
    30661 cgctggcccg taaccccaat cacatcgaaa tcagcgccaa ccagtacgct aactggggtt
    30721 cgaaaggcgc atcggttgat cgtctcgacg tggtggtact gagcgcgctg gaaattgaca
    30781 cccagttcaa cgttaacgtg ctgaccggct ctgacggcgt actgcgtggt gcttccggtg
    30841 gtcactgcga taccgcgatt gcctctgcgc tttccatcat cgtcgcgccg ctggtacgcg
    30901 gtcgtattcc gactctggtg gataacgtgc tgacctgcat caccccgggc tccagtgtcg
    30961 atattctggt cacagaccac ggtatcgcag ttaacccggc acgtccggag ctggcagaac
    31021 gtctgcagga agcgggcatt aaagtggttt ccattgagtg gctgcgtgaa cgtgcgcgtc
    31081 tgctgaccgg tgaaccacag ccgattgaat tcaccgaccg cgtcgttgcc gttgtgcgtt
    31141 accgcgatgg ctcggtgatc gatgttgtac atcaggtgaa ggaataagcc atgcacctgc
    31201 ttcctgaact cgccagccac catgcggtgt caattcccga gctgctcgtc agccgggatg
    31261 aaaggcaagc acggcaacac gtctggctca agcgccatcc tgttccactg gtctccttta
    31321 ccgtggttgc gcctaggccg attaaagaca gtgaggtcac acgccgaatt tttaatcatg
    31381 gcgtgacagc cttgcgtgcc ttagccgcaa aacagggctg gcaaattcag gagcaggctg
    31441 cactggtttc cgccagcggg ccggagggta tgttgagcat tgccgccccg gctcgcgacc
    31501 tcaagctcgc caccattgag cttgaacata gtcatcctct cgggcggtta tgggatatcg
    31561 atgtcctgac gcccgaaggc gaaattctct cccgccgcga ctattcactg ccgcctcgcc
    31621 gctgcctgtt gtgcgagcaa agcgcagccg tctgcgcgcg tggaaaaccc atcaactgac
    31681 cgatttactc aaccgcatgg aggcactgct gaacgatgtc gatgcctgca acgtcaacta
    31741 aaaccacaaa gcttgcgacg tcattaatcg atgagtacgc cctgctgggc tggcgcgcca
    31801 tgctgactga agtcaatctg tcaccgaaac caggtctcgt ggatcgcatt aactgcggtg
    31861 cgcataaaga tatggcgctg gaagatttcc accgcagcgc gctggcgatt cagggctggc
    31921 taccccgttt cattgaattt ggtgcctgta gtgcggaaat ggcaccagaa gcggtactcc
    31981 acggattacg cccaattggt atggcttgca aaggtgatat gttccgcgcc accgcgggcg
    32041 taaacacgca taagggcagc attttttctt tagggctact gtgtgcggca attggccgtt
    32101 tgcttcagct caaccagtcg ctaacgccaa caaccgtttg ttctacggcg gcaagtttct
    32161 gccgtggcct gaccgatcgc gaactgcgta ccaataattc acaactgacg gcaggtcaac
    32221 ggttgtacca gcagcttgcc cttaccggcg cacgcggtga agccgaagcg ggttatccac
    32281 tggtgatcaa ccacgccttg ccgcattacc tcactctgct ggatcagggg ttagatcctg
    32341 aactggcatt gctcgatacc ttgctcctac tgatggcgat caacggcgat accaacgttg
    32401 cttcgcgcgg tggcgagggg gcctgcgctg gctacagcgc gaggcgcaaa cattattgca
    32461 aaaagggggc attcgaaccc ccgccgatct cgattatctc cggcagttcg acagggagtg
    32521 tatcgaacga aatctcagtc caggcggcag tgccgacctg ctgatcctta cctggttttt
    32581 agcacagatt taattattta agcacttgat aaatttggaa atattaattt tcggagaacc
    32641 cgtatgtctt tagcaaaaga taatatatgg aaactattgg ccccactggt ggtgatgggt
    32701 gtcatgtttc ttatccctgt ccccaacggt atgccaccac aggcatggca ttacttcgct
    32761 gtgtttgtgg caatgattgt cggcatgatc ctcgagccaa ttccggcaac agcgatcagt
    32821 tttattgcgg ttactatttg cgttattggc agtaattacc tgctctttga tgccaaagaa
    32881 ttagctgacc cagcgtttaa tgcgcaaaaa caggcgctga aatggggtct ggctggtttt
    32941 tccagcacca cggtatggct ggtatttggc gcatttattt ttgcattagg gtatgaagtt
    33001 tccgggttag gtcgtcgcat tgcccttttc ctggtgaaat tcatgggcaa acgcacgctg
    33061 acgttgggtt atgcgattgt cattatcgac attctgctgg cgccgtttac accgtccaac
    33121 accgcgcgta ccgggggtac ggtttttccg gtcattaaaa acctgccgcc gttgtttaaa
    33181 tcattcccca acgatccgtc cgcgcgtcgt attggcggct atttgatgtg gatgatggtc
    33241 attagtacca gtctgagttc gtccatgttt gtcaccggtg cggcaccaaa cgtgctgggt
    33301 ctggagttcg tcagcaaaat tgccggtatc cagattagct ggttgcagtg gttcctctgc
    33361 ttcctgccgg ttggggttat cttgcttatc attgcgccgt ggctttccta cgtgctgtac
    33421 aaaccggaaa tcacacacag tgaagaagtg gcaacctggg cgggtgatga actgaaaacc
    33481 atgggtgcgc tgacacgcag agagtggaca ctgattggcc ttgtattgct cagcttaggt
    33541 ttgtgggttt ttggcagtga agtcattaat gctactgcag ttggtctgct ggcagtttcg
    33601 ctaatgctgg ccctgcacgt tgtgccttgg aaagatatta cccgctataa cagcgcatgg
    33661 aacacgctgg tcaacctggc aactctggtt gtgatggcta acggcctgac tcgttctggc
    33721 tttattgact ggttcgccgg taccatgagt acgcacctgg aaggattctc accaaacgca
    33781 acggtgattg tactggttct ggtgttctac tttgcacact acctgtttgc cagcctgtct
    33841 gcgcacaccg caaccatgct gccggttatt ctggccgtcg gtaaaggtat tccgggcgta
    33901 ccaatggaac aactgtgtat cctgctggtg ctgtctatcg gtatcatggg ctgtctgacg
    33961 ccctatgcaa ccggtcctgg ggtgattatt tacggctgtg gctatgtgaa atcaaaagat
    34021 tactggcgtc ttggcgcaat cttcggggtg atttatatct ctatgttgct gttggttggc
    34081 tggccgattc tcgccatgtg gaactaatac gttcgccaaa cgctgaataa atcatcacgc
    34141 ccgccaggta agcccacctg gcgggcgtga tgatttaata gatagtattc agtgtatgta
    34201 tgagttccac acccattatg aaagcattct ggcgtaacgc cgcgttgctc gcggtttctc
    34261 tgcttccctt ctcttctgcc aacgccgtag cgttgcaggc aaaacagtat ggcgattttg
    34321 atcgctatgt cctggccctc tcctggcaaa ccggattttg ccagagtcaa cacgatcgaa
    34381 atcgtaacga acgagatgaa tgtcgcctgc aaaccgaaac gaccaacaaa gctgattttc
    34441 tgaccgtaca tggtctgtgg ccaggattgc ctaaatcggt tgctgcccgt ggtgttgatg
    34501 aacgccgctg gatgcgcttc ggttgcgcta ctcgcccaat cccgaatcta ccagaagcgc
    34561 acgccagccg gatgtgttca tcgccggaaa ccgggttatc actggaaacg gccgctaaac
    34621 taagtgaagt catgccagga gctggcggac gttcctgcct ggaacgctac gaatatgcca
    34681 aacacggtgc ctgctttggt tttgatccgg acgcatactt cggtacgatg gtacgcctga
    34741 atcaagaaat taaagagagc gaagccggaa aattccttgc ggataattac ggtaaaacag
    34801 tgagccgccg tgactttgac gccgcctttg ccaaaagctg gggaaaagag aacgtgaaag
    34861 cagttaagct aacgtgccag ggtaaccctg cgtatttgac tgaaattcag atctcgatca
    34921 aagctgacgc catcaacgct ccgctttctg caaactcatt cttgccacaa ccacacccaa
    34981 gcaactgtgg caaaaccttt gtgattgata aagtgggtta ttaatcatct gatttacaaa
    35041 acacgctaat tcgtcttcca taaaccgtga cgattaagaa ttatacataa tgcgctgcat
    35101 tgaggaattc cctgaatgtg acgcaaatca cttcaaagag tgagcaacag tcagtatcat
    35161 catgtgagtt aaaccctcgc cgcctgacgg tgagggtttt cttttgggta tgtttatctg
    35221 cgacactcgc agtaccgacg acatggagta aaaatgtcca gaccaactat catcattaac
    35281 gacctggatg ccgaacgcat cgatattctg ctggagcaac ccgcctatgc tggtttgcca
    35341 atcgccgacg cgttaaacgc agagttggat cgcgcccaaa tgtgttcgcc agaagagatg
    35401 ccacacgacg tggtgacaat gaacagccgg gttaaattcc gcaatcttag cgatggcgaa
    35461 gtgcgtgtgc gcacgctggt gtatccggca aaaatgaccg atagcaatac tcagctttcc
    35521 gttatggctc cggtaggtgc cgcactgctg gggctgcgcg ttggcgattc cattcactgg
    35581 gaacttccgg gcggcgttgc aacccacctt gaagtgctgg aactcgaata ccagccagaa
    35641 gctgctggcg actacctgct ttaatcccat ctgcacaagc gataactcgc tttgcccaga
    35701 ggatgcactc gcatcctctt tacgcaaaat cagcaatttt tcctggttct cactgttcac
    35761 ttttgctgca aaattattcc gtttcgtttg tgggaataac catggcagaa gcattttaca
    35821 tcctgatagg atttctgatt atggcggcga ttatcgtcat ggctgtcctt tacctcgaaa
    35881 accactcctg acgatcatat tgttcccccc ggcatcgcat tcaccagacc tgaaactgcc
    35941 ttctgcgcct cctctgcgct ttgtgcaccg ggtaccagaa tcaccttacg gcactcctct
    36001 tcacgttttt cgaaaatctc atatccccgg gcggcctctt caaacggcat atagtgggta
    36061 acaatttctt ctggtttcag taatcctttc tcaattaacg gtaataattc tcccagccat
    36121 gcgtgaacgt gggtctgtcc cattttaaac gtcaaccctt tatcaaaggc gtcaccaaac
    36181 aggaaaccgt gaataaatcc agcgtagacg cccggtacgc taacaatgcc gccacgcctg
    36241 accgccgcaa tacactggcg caacgcttta ccgctgctgc cctccagttt caggttagtc
    36301 agcaccgttt ccgtagtgct gcctttcgct tcaaaaccga cggcgtctat tactgcatcc
    36361 acgccccggt gacctgccgt ttgttcaata attgactgtg ccggatcgct atcttcatcg
    36421 aaattaatcg ggatcgcgcc gtagcggtca gcggcgaaac tcaagcggta gggatgatga
    36481 tcaacaacaa aaatctgttc cgcaccgagc aaccgtgcac aggcgattgt caacaatccc
    36541 actggaccgg caccatagac tgcaacgctt gaaccttgtt ggatctgcgc attttttgct
    36601 gcctgccatg ccgttggcag aatatcagaa aggaaaaggg ctttatcatc tgaaagcaaa
    36661 ggcggtactt taaacggccc cacattccct ttagggacgc ggacatattc cgcctgtcca
    36721 ccaggaacgc caccatacag gtgactataa ccaaacaatg ccgcgggagc tggtatctgt
    36781 tttttattga gcgcagcgcc tttacccgca ttggtatttt cgcaggcggc atattgctgc
    36841 attcgacaga aaaaacagtc gccacaagca atgacaaacg gaattaccac ccggtcgcct
    36901 ttttgcaaat tttttacgtc ctttccggtt tcaacgactt cccccataaa ttcatgacca
    36961 aaaatatcgc catgtttaac ctggggtatt ttgcctcgat aaagatggag atcagagcca
    37021 cagatcgccg ttgccgtaat acgcagaata atatcatctg cctgttcaat gcccggatcg
    37081 ggaacatttt ctacctgaac gtgatgtggg ccgtgataag tcaatgcttt catgcaacct
    37141 ccagagacag ttcaaaaaag agtcagtctt taagggtagc tatcacagcg ggaaaacggg
    37201 cggtaccgca ggttttggga gaattcctgg tgttcagtga gaatatatta atcacagaaa
    37261 ccgttcgtaa ggaaaaagaa ccagacaaat atcagggata aatattataa tcatggcgaa
    37321 tgatttgttc atgattaaca gggagaaagg gttatgtata agacaatcat tatgccagtt
    37381 gatgtatttg aaatggaatt gagcgacaaa gctgttcgcc acgctgaatt cctcacccag
    37441 gatgacggag ttattcatct acttcacgta ctacccgggt cagccagcct gagcctggac
    37501 cgttttgccg ctgatgtgcg tcgttttgaa gagcatctgc aacatgaagc agaagaacgt
    37561 ctgcaaacga tggtcagcca cttcaccatc gatccttccc gcattaaaca acatgtccgt
    37621 tttggtagcg tgcgggatga agtcaatgag ttggcagaag aactgggggc tgatgttgta
    37681 gttatcggtt ctcgcaaccc atcgatttcg acccatctgt taggttctaa cgcctcgagc
    37741 gtgatccgcc acgccaatct gcctgtactg gtcgttcgct aacagataaa agtatttatg
    37801 ccgccctgcc tggaacatcc cggcagggct ttttaatgcc ataaaaaagc cgctaggttt
    37861 gaccccggcg gctaagcaat tgcaggtgaa tcttacttct tcttatgcag ttttggtgcg
    37921 aatcaggtag tcaaaagcac tcagagaggc tttggcacct tcgccagtgg cgatgatgat
    37981 ctgcttgtac ggaaccgtcg tacagtcacc cgctgcgaat acgcctttga cgttggtttc
    38041 gcatttcgca tcaatgataa tctcacccat gcggttacgt tcgactgcgc cttcgagcca
    38101 gttggtgttc ggcagcagac caatctgcac gaaaataccg gccagttcga tgttgtgaat
    38161 atcgccgctg acacgatctc gatattccag accaacgact ttgctgccgt cgcctttcac
    38221 ttccgtggtt tgcgcattca gaataatgtc gacgtttttc aggctgcgca gtttgtcctg
    38281 cagaacctgg tcggctttca tttctggcgc aaattccagc agcgttacgt gctcaacgat
    38341 acccgccagg tcaattgccg cttccacgcc ggagttaccg ccgccgataa ccgctacgcg
    38401 tttaccttta aacagcgggc cgtcgcagtg cgggcagtag gtcacgcctt tggtgcgata
    38461 ctgatcttcg cccggaacgt tcatgttgcg ccattttgca ccggtcgcca cgataatgct
    38521 gcgtgctttc agtaccgcgc cagaagctgt ttcaatctga tgcagaccac cttcaactgc
    38581 tgctgggatc agtttgctgg cgctctggct gtcgatcaca tcaacgtcgt attcatcaac
    38641 gtgaactttc agtgcgcctg ccagcttctg cccttcagtc ttcggtacag aaatgtagtt
    38701 ttcgatatca acggtatcga ggatctgacc accaaaacgt tcgcccatca gaccggtacg
    38761 gatgccttta cgtgcggagt aaattgctgc cgctgcaccc gccgggccgg aaccgacgat
    38821 taatacgtca taagcatcac gcttgttcag ctcttctgcc gcacgttttt ccgcgcccgt
    38881 atcaattttg gcaacgattt cagtcaacgt catgcggccc tgaccaaact ctttcccgtt
    38941 tacgaacact gccggaacgc ccatcacgtt gcgatcggtg atttcgttct ggaaggtgcc
    39001 gccgtcaatt gcagtgtgct tgatgcgcgg gttcagtacg ctcatcaggt tcagcgcctg
    39061 caccacgtcc gggcagttat ggcaagagag cgagtaatag gtttcgaatt caaaatcacc
    39121 gtcaatatgg cgaatctgct ccagcagaga ctgcgcttct ttcgacggat gaccaccggt
    39181 ccacagcaac gccagtacca gcgaggtgaa ctcgtggccc agcggggagc ctgcaaaacg
    39241 tggcccctgg ttggaacctg ggttggtgat caggaaagac ggcttacgca ccggcaagct
    39301 gttatcttct ttaaaggtga ctttgtctga cagttctgcg atttcagcca acagttcctt
    39361 gatttctgcc gatttagcgc tgtcatccag cgtggcaatt aactcaacag gcttggtcaa
    39421 tttctcaagg taagccttga gttgagtttt catatttgtg tcgagcatgt ttatctcctg
    39481 ggctttaaac atcatcatgc aagcggcctc tacggctacc tggatgcagc ttgcatcata
    39541 gtgcggggaa gaaaatcggg tgccgcagca cccgaagaat taggtgaatt tccgaagtat
    39601 ttcgcgccgg agttggtagc gcgaaagacg aaggaaattt agattttacc aaccaggtcc
    39661 agagacggag ccagagttgc ttcaccttct ttccatttag ccgggcaaac ttcacctggg
    39721 tgagaagcta cgtactgtgc tgctttgatt ttacgcagca ggtcagacgc gtcacggcca
    39781 atgccttcag cggtaacttc gattgcctgg atgataccct gcgggtcaac aacgaaggtc
    39841 gcacggtcag ccagaccttc atcttcacgc atgttgtcga agttacgggt cagggcgcca
    39901 gtcgggtcgc cgatcatcgc atatttgatt ttagcgatgg tttcagagct gctgtgccat
    39961 gctttgtggg tgaagtgagt atcggtagat actgcgtata cgtctacgcc cagtttctgc
    40021 agttcttcgt agtggtcagc aacgtcaccc agttcggtcg ggcatacgaa agtaaagtca
    40081 gccgggtaga agaagaagac gctccagcgg ccttcggtat ctttttcggt gatttcgatg
    40141 aattcgccgt ttttgaatgc ctggttttta aaaggtttaa ttttggtgtt aatcaaggac
    40201 atctatactt cctccgtgtt ttcgatgaga tgtaaggtaa ccaatttttg ccgattcggc
    40261 taatgcgttt ccattatcaa atcgataagt tttaccttac aaccttcgta agacaacttt
    40321 gtgaactttg caccgccagc ggcgataaaa agtaaaatgg ccccctttcc aggtgaccgt
    40381 gtaatctgaa ctaccctttg gtatcttcag cgcctgcctg caggctgagg cgttgccctt
    40441 acaaatgcaa caacgacatg gattacaaca ccctcataaa caaagggcaa tcacctgatc
    40501 taagctctta cctatgacag tgataggtta tgccttttac tcgacttttg cactgactga
    40561 aaaggacaaa ttaatgttaa aaaagatact tttactggct ctgcttcctg caatcgcctt
    40621 cgcagaggaa cttcctgctc cagtaaaagc gattgaaaaa cagggcatta caatcatcaa
    40681 aacgttcgat gcccccggag gaatgaaagg ttatctcgga aagtatcagg atatgggcgt
    40741 caccatctac ctgactccag atggtaagca cgctatctct ggttacatgt acaacgagaa
    40801 aggtgaaaac ctgagtaaca cacttatcga aaaagaaatt tacgcaccag ccggacgcga
    40861 aatgtggcaa cggatggaac aatcccactg gctcctcgac ggtaaaaaag atgcgccggt
    40921 cattgtctac gtcttcgccg atccgttctg cccatattgt aaacagttct ggcagcaggc
//
LOCUS       DAJVUY010000012        40514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.012, whole genome shotgun sequence.
ACCESSION   DAJVUY010000012 DAJVUY010000000
VERSION     DAJVUY010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.012"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ72_000628"
     CDS             complement(154..1011)
                     /gene="murI"
                     /locus_tag="OQQ72_000628"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCS2010468.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ72_000629"
                     /pseudo
     CDS             complement(956..2804)
                     /gene="btuB"
                     /locus_tag="OQQ72_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2858..3048)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ72_000630"
     CDS             3162..4262
                     /gene="trmA"
                     /locus_tag="OQQ72_000630"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HCS2010469.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4302..4661)
                     /locus_tag="OQQ72_000631"
     CDS             complement(4302..4661)
                     /locus_tag="OQQ72_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HCS2010470.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ72_000632"
     CDS             complement(4661..5311)
                     /gene="fabR"
                     /locus_tag="OQQ72_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HCS2010471.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ72_000633"
     CDS             5632..7032
                     /gene="sthA"
                     /locus_tag="OQQ72_000633"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HCS2010472.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ72_000634"
     CDS             complement(7015..7932)
                     /gene="oxyR"
                     /locus_tag="OQQ72_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCS2010473.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ72_000635"
     CDS             complement(8199..9572)
                     /gene="argH"
                     /locus_tag="OQQ72_000635"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HCS2010474.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDAFDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ72_000636"
     CDS             complement(9633..10409)
                     /gene="argB"
                     /locus_tag="OQQ72_000636"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HCS2010475.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ72_000637"
     CDS             complement(10417..11421)
                     /gene="argC"
                     /locus_tag="OQQ72_000637"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCS2010476.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11575..12726
                     /gene="argE"
                     /locus_tag="OQQ72_000638"
     CDS             11575..12726
                     /gene="argE"
                     /locus_tag="OQQ72_000638"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HCS2010477.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDIDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNELNG
                     LLNDALAPVIERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ72_000639"
     CDS             13078..15729
                     /gene="ppc"
                     /locus_tag="OQQ72_000639"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCS2010478.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEAPPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYKSWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIR
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYL
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15912..17645
                     /locus_tag="OQQ72_000640"
     CDS             15912..17645
                     /locus_tag="OQQ72_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HCS2010479.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17860..18711
                     /locus_tag="OQQ72_000641"
     CDS             17860..18711
                     /locus_tag="OQQ72_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2010480.1"
                     /translation="MYHDISYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLE
                     IVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKTPTTTFSVLFGKQQLGFSVVQWD
                     GKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
                     IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL
                     NHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLT
                     EKPTTPE"
     gene            complement(18698..19039)
                     /locus_tag="OQQ72_000642"
     CDS             complement(18698..19039)
                     /locus_tag="OQQ72_000642"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS2010481.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(19041..19919)
                     /locus_tag="OQQ72_000643"
     CDS             complement(19041..19919)
                     /locus_tag="OQQ72_000643"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HCS2010482.1"
                     /translation="MTSSAGQRISCNVVETRLNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19885..22182)
                     /locus_tag="OQQ72_000644"
     CDS             complement(19885..22182)
                     /locus_tag="OQQ72_000644"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS2010483.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22233..22553)
                     /locus_tag="OQQ72_000645"
     CDS             complement(22233..22553)
                     /locus_tag="OQQ72_000645"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS2010484.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEARESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22568..23647)
                     /locus_tag="OQQ72_000646"
     CDS             complement(22568..23647)
                     /locus_tag="OQQ72_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
                     /protein_id="HCS2010485.1"
                     /translation="MNELVQILKNTRRHLMTGVSHMIPFVVSGGILLAVSVMLYGKGA
                     VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG
                     FFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIVGTLITAGIMMWGLGEPVGA
                     LTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVVI
                     AAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVI
                     PSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVL
                     KSLARKNGSSTDEKEDDLDLDFEIN"
     gene            23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ72_000647"
     CDS             23956..26457
                     /gene="ptsP"
                     /locus_tag="OQQ72_000647"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS2010486.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLTGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMTQLDSRECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ72_000648"
     CDS             26469..27131
                     /gene="fsa"
                     /locus_tag="OQQ72_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS2010487.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ72_000649"
     CDS             27142..28245
                     /gene="gldA"
                     /locus_tag="OQQ72_000649"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HCS2010488.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAAFSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28519..29136
                     /locus_tag="OQQ72_000650"
     CDS             28519..29136
                     /locus_tag="OQQ72_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HCS2010489.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ72_000651"
     CDS             complement(29163..30068)
                     /gene="yijE"
                     /locus_tag="OQQ72_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HCS2010490.1"
                     /translation="MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTAL
                     RCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAIL
                     SYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILS
                     GVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFW
                     ALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGS
                     GIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ72_000652"
     CDS             complement(30162..32342)
                     /gene="katG"
                     /locus_tag="OQQ72_000652"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCS2010491.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ72_000653"
     CDS             complement(32671..33561)
                     /gene="metF"
                     /locus_tag="OQQ72_000653"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HCS2010492.1"
                     /translation="MSFFHASQRDALNQRLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ72_000654"
     CDS             complement(33910..36342)
                     /gene="metL"
                     /locus_tag="OQQ72_000654"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HCS2010493.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVA
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ72_000655"
     CDS             complement(36345..37505)
                     /gene="metB"
                     /locus_tag="OQQ72_000655"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCS2010494.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ72_000656"
     CDS             37782..38099
                     /gene="metJ"
                     /locus_tag="OQQ72_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HCS2010495.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38283..38891
                     /locus_tag="OQQ72_000657"
     CDS             38283..38891
                     /locus_tag="OQQ72_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HCS2010496.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            39036..39711
                     /locus_tag="OQQ72_000658"
                     /pseudo
     CDS             39036..39711
                     /locus_tag="OQQ72_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(39883..40155)
                     /locus_tag="OQQ72_000659"
     CDS             complement(39883..40155)
                     /locus_tag="OQQ72_000659"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010497.1"
                     /translation="MELQLSDKGVIKMKAIQCCYFLALVSSNLMAGVMGNDNIFLSNS
                     DSAALYCVAKIFPDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(40121..40514)
                     /locus_tag="OQQ72_000660"
                     /pseudo
     CDS             complement(40121..40514)
                     /locus_tag="OQQ72_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747579.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4329 domain-containing protein"
BASE COUNT         9965 a        11136 c        10076 g         9337 t
ORIGIN      
        1 gcttttctct gttgagattc tcaggagaac cccgctgacc cggcggcgtg tttgccgttg
       61 ttccgtgtca gtggtggcgc attataggga gttattccgg cctgacaaga ggaaatttaa
      121 aataattttc tgaccgcgca acattcaacc aaatcagcct aaaactgcca gtttttcgag
      181 cgtttcgaag ccgtaacgct gtaaaacggg caataattgt tcagcttctg gcgtcattgc
      241 catacaaaag gcaatattcg catcggcaga ttttgcatcc ggggcttcat gttctaacaa
      301 ccaggccgtt cggcgagcaa tcgctgcgcc agaatccact agccgggttc cctctggcag
      361 cacttgtaac agttcttctt gtagtagagg gaaatgggtg caacccaata caacggtatc
      421 tggcggctct ttcattctta accacgggcg taggatacgt tttagtgcat ccagagaaac
      481 atcttcgcca tgtagcttcg cttcagccaa ctcaaccatc tctgccgagc ccagcatttc
      541 tatctggcat tcattagcga aacgcgcgat cagctcatga gtataagaac gtttaactgt
      601 tccgcgggtt gccagtaatc cgacaatgcc atttgccgtc agacgtgcag caggtttaat
      661 cgccggcacg acaccaacaa ccgggaagtc gaacttttcg cgtaatgcag gaagtgaaac
      721 ggtactggca gtgttgcaag cgaccacagc cagcgcaagg ggataacgtt cttgcaccgc
      781 ggtgacaatt gccaccactc gctcaacaat aaacgcttcg cttttttcgc catacgggaa
      841 agcgacgtta tcgaaagcat aaatgtaatg gagatccggt aagagatgcc ggatctcgtc
      901 atagaccgac aacccaccga cgccggagtc aaacaccagc acggtgggac gtggttcaga
      961 aggtgtagct gccagacaag gtgtattccc gtcctgcagt ttggtagcca tagactgtct
     1021 cataatcttt gtcgaacagg ttggctattt taccacgaac tgtcaggtga gaggtgaccg
     1081 gatacgcaac cgcaagatcc cacaagctca caccgcccat tttaacggtt tgataaggat
     1141 aagatgagta atccttatca tagcgagtgc ctaaatactg ataagtaata ccccagtcga
     1201 agtcatacaa ctgccagtcg agctggtatt tcacctgctg tttagcacgg cgtaacaacg
     1261 gcgtgtcggt aatcgcattg cgcgcatcga cataatcata actcacagta tgcgtcagtg
     1321 gtccggtatc aaaattggcg gtcgcctcga cgcccttaat ccgcgctttc ccttcgttgt
     1381 aatatttcag ggtgtgatca tcataatcga tcaagtcact gacatcgtta cgatatccgg
     1441 aaatacgcca gttcacccca gcggttaagc cttcaaacgc gccttcccac tgtttgcttt
     1501 tctccgggtc cagattcgga tttccgtaga agccatacag ttgccccaga tttggtgcct
     1561 tataagatgt cccgtaggaa gcaatgaagc gataaccttc gatgaattcc caaccggcgc
     1621 tggtttgcca ggttccatga cgaccaaact gtgagttatc gtcactgcgt gctgcgcctt
     1681 caaaggtaaa atcgccgact tgttgcagcc cggtcagata gatgccggta ttacgttgat
     1741 catatccatc ctcaacataa cctgtacccg gcgtcgtagt ctgtttctgc cagtcgacac
     1801 ccgcaccaat actaccgtga ccaacgatga cattgtttgc ccactggacg gtgtattgct
     1861 tcatctcatc gagcgtcgcc gacgaatcat aacgaccata atggggatcg tagttgtaat
     1921 ctttgctatg gctatagctg gtaatgagtt gtgatttaat cagttcgccg ttatagcgca
     1981 gcccggcgtc ccaactttgg ctatagagtt tacggatatc gagcaacggt gaaccgggag
     2041 aataatacgc gtcataattg gtacggttat catagccata gccgcgcaca aagccgctcc
     2101 aggcatcagt aaagttatgc tccagcgcgc cataaagcgt tttacttaaa aaaacatcgt
     2161 tatctgtctg cgcttgcgtt ccggtattac cataggcaac aacatcataa ccatgagtat
     2221 gggcataatc gcccaacagc gttacccgtg tcttatcccc cagttgttgc tgcgtagaga
     2281 catcatagtt ctgataacta ttgcttcccc accctgctga aatttccgtt ccgggttcat
     2341 cgcgcgtcgt gatgatattc accaccccgc ctattgcatc ggaaccataa acagcggagc
     2401 gcggcccacg gatatattca acacgctgga caagcgcacg caatagggaa ctggctaagg
     2461 tcggcagaac cactcacccc cgccagattc aggcgtacgc catcaattaa caccaacaca
     2521 tgactggcat ttgtaccgcg aataaaaata gatgagagct gacctgaacc gccgttttgg
     2581 gtgatatcga cgcccggaag acggcgcagc acatcattga ccgaggtcga ctgccagcgg
     2641 tcgatatcct gacgggtcac aacggtggtt ggtgcaagca cagtgctgcg cggctgttca
     2701 aaacggttag cagtaacgac gagagtatcc gggctggtat cctgtgccca agcggaaaag
     2761 gctgtgacag aacacgccgt cagcagcgaa gcttttttaa tcattgtaaa gcatccacaa
     2821 tagaagaagg atgccgcagg tttcatcaat attacgcgat gatgagacgt tggccggcag
     2881 gtcttcgggc ttggaggggt atctaagata ctaagagatg atgacttccc accggatggc
     2941 agtgtccgca taacgcaatc atcgcacctt tccttaccgc tgcgcgtcag ctccagattc
     3001 gcactggatt ccctattaac tcacaggacc ggcaagtgga tgctacaggt tgtaacaagt
     3061 tactgtccag acgtagctca caaataggaa ttcatcaaga tctggacatc tgatgagcaa
     3121 tccctacaat cgccgcgtac tttaattttt caggatacat catgaccccc gaacaccttc
     3181 caacagaaca gtatgaagcg cagttagccg aaaaagtggt acgtttgcaa agtatgatgg
     3241 caccgttttc tgacctggtt ccggaagtgt ttcgctcgcc ggtcagtcat taccggatgc
     3301 gtgcggagtt ccgcatctgg cacgatggcg atgacctgta tcacatcatt ttcgatcaac
     3361 aaaccaaaag ccgtatccgc gtggatagct tccccgccgc cagtgaactt atcaaccagt
     3421 tgatgacggc gatgattgcg ggtgtgcgta ataatcccgt tctgcgccac aagttgttcc
     3481 agattgatta cctcaccacg ctgagtaatc aggcggtggt ttccctgcta taccataaga
     3541 agctggatga tgagtggcgt caggaagcgg aggccctgcg cgatgcactg cgcgcgcaga
     3601 atctgaatgt gcatctgatt ggtcgggcaa cgaaaaccaa aatcgagctg gatcaagatt
     3661 acatcgacga gcgtctgccg gtcgcaggga aagagatgat ctaccgtcag gtagaaaaca
     3721 gctttaccca gccgaacgcg gcgatgaata ttcagatgct ggaatgggcg ctggacgtaa
     3781 ccaaaggctc aaaaggcgat ttactggagc tgtactgcgg caacggtaac ttttcattag
     3841 cgctggcgcg caattttgat cgggtattag ccaccgaaat cgctaagccg tcggttgctg
     3901 ctgcgcaata caacatcgca gctaaccata ttgataacgt acaaattatt cgtatggcgg
     3961 cagaagaatt tactcaggcg atgaatggtg tgcgcgagtt taaccgcctg caagggatcg
     4021 acttaaagag ttatcagtgc gaaaccattt ttgtcgaccc accgcgcagc ggtctggaca
     4081 gtgaaaccga gaaaatggtg caggcgtatc cgtgtatttt gtacatctcc tgtaacccgg
     4141 aaacgttatg caagaatctg gaaacattaa gccagacgca caaggtcgaa cgtctggctc
     4201 tgtttgatca gttcccctac acgcaccata tggagtgcgg cgtattactg accgcgaagt
     4261 aaaacccatg ccggatgcgc cagcatccgg cataataccg attactcagc aacttcctgc
     4321 ttacggttac gcatcttcgc gccaatccag aacaccataa tgacggagag tactgccggg
     4381 aagaagttag agccgatatc cggatattcc gcacgaacta ccgtgctgta cagcagtacg
     4441 ccgagaataa aacaggcagc tgccagaccc ggcaagccta ccggcatagt gcgattaaga
     4501 taacgttgat gcaggcagta aaccgtcagc accagggaaa taatcgggaa tacagaaaat
     4561 ggcacaatgg agctaaacag cgctgcgaaa gtaccattaa tcgataagcc agcaactaac
     4621 gccagcagca gcgtacctct atcttgattt gcttgtttca ttactcgtcc ttcacatttc
     4681 ccggaataat tgcggttttc tcttgttcac ggcgatacca gtaataagcc cctttcgaaa
     4741 tcattcgcag ttgcagtacc agtcgctctt ctaattgccg acgttgttcg acgccgacgt
     4801 ccaacgcctc ggcacccgca ctgaagacaa ttgtcaccat tgcttcggct tgcgcttcag
     4861 taaacgcacg cggcatatgg ttttcgagtt ccagatagtc cgcaagttcc gcaatgaagt
     4921 gctgaatttc acgcgcaacg gcggcacgaa acgcagcgga ggtgccggag cgttcccgca
     4981 ataataaccg gaaggcgtta ggattattac cgatgaactc cataaatgtg gagaccgagg
     5041 tgcggatcac actcccgcct ttggcgatac gctgacgcgc ctggcgcatg agttggcgta
     5101 gcattaaacc gctctcatca accatggtca gacccagttc gtctacgtcg cggaaatgcc
     5161 gataaaaaga ggtgggagca atgcccgctt cacgcgccac ttcacgcaaa ctcaggctgg
     5221 cgaagctgcg ttcagcactt aattggctaa atgcggcttc caccagcgaa cggcgggttt
     5281 tttctttttg ttgcgctctt atgcccatca cgatgtctga atccttgcca aaagtactgc
     5341 tggcactata ccagagaatg aacatactgg attgctccag tattgtgaat gaacggtaac
     5401 gcaataaaac atatttactg gccggttctt ttacgtacag cggaaacctg ccgcttaaac
     5461 ggagagtatc gtcgataaaa atccaataaa acgtcagggc aaaagtaaga aacagacaaa
     5521 gcaaaggccg ctcaggatat agccagataa atgacgggga tcaattggct tacccgcgat
     5581 aaaatgttac cattctgttg cttttatgta taagaacagg taagccctac catgccacat
     5641 tcctacgatt acgatgccat agtaataggt tccggccccg gcggcgaagg cgctgcaatg
     5701 ggcctggtta agcaaggtgc gcgcgtcgca gttatcgagc gttatcaaaa tgttggcggc
     5761 ggttgcaccc actggggcac catcccgtcg aaagctctcc gtcacgccgt cagccgcatt
     5821 atagaattca atcaaaaccc actatacagc gaccattccc gactgctccg ctcttctttt
     5881 gccgatatcc ttaaccatgc cgataacgtg attaatcaac aaacgcgcat gcgtcaggga
     5941 ttttacgaac gtaatcactg tgaaatattg caggggaacg ctcgctttgt tgacgagcat
     6001 acgttggtgc tggattgccc ggacggcagc gtcgaaacac taaccgctga aaaatttgtt
     6061 attgcctgcg gctctcgtcc atatcatcca acagatgttg atttcaccca tccacgcatt
     6121 tacgacagcg actcaattct tagcatgcac cacgaaccgc gccatgtact tatctatggt
     6181 gctggagtga tcggctgtga atatgcgtcg atcttccgcg gtatggatgt aaaagtggat
     6241 ctgatcaaca cccgcgatcg cctgctggca tttctcgatc aagagatgtc agattctctc
     6301 tcctatcact tctggaacag tggcgtagtg attcgtcaca acgaagagta cgagaagatc
     6361 gaaggctgtg acgatggtgt gatcatgcat ttgaagtcgg gtaaaaaact gaaagctgac
     6421 tgcctgctct atgccaacgg tcgcaccggt aataccgatt cgctggcgtt acagaacatt
     6481 gggctggaaa ctgacagccg cggacagctg aaggtcaaca gcatgtatca gaccgcacag
     6541 ccgcacgttt acgcggtggg cgacgtgatt ggttatccga gcctggcatc agcggcctat
     6601 gaccaggggc gcattgccgc gcaggcgctg gtaaaaggcg aagccaccgc acatctgatt
     6661 gaagatatcc ctaccggcat ttacaccatc ccggaaatca gctctgtggg caaaaccgaa
     6721 cagcagctga ccgcaatgaa agtgccatat gaagtgggcc gcgcccagtt taaacatctg
     6781 gcacgcgcac aaatcgtcgg catgaacgtg ggcacgctga aaattttgtt ccatcgggaa
     6841 acaaaagaga ttctgggtat tcactgcttt ggcgagcgcg ctgccgaaat tattcatatc
     6901 ggtcaggcga ttatggaaca gaaaggtggc ggcaacacta ttgagtactt cgtcaacacc
     6961 acctttaact acccgacgat ggcagaagcc tatcgggtag ctgcgctaaa tggcttaaac
     7021 cgcctgtttt aacactttat cgaaatggcc atccattctt gcgcggatgg cctctgccag
     7081 ctgctcatag cggctgcgca gcggtgagcc aggacgataa accaggccaa tcgtgcggcg
     7141 aggttccggc ttaatacacg gcaaataaac aaccccatcg cgtttgcgct ccggcggcac
     7201 agccagcgca ggcagtaaag tgatcccgct acctgccgcc accatgttac gcagtgtctc
     7261 caggctggtc gcgcggaagt gtgtatcttc atccgccccg gcttcaaagc agaaacccat
     7321 tgcctgatcg cgcaaacagt gaccatcttc cagcatcagc agtttttccc ctgccagatc
     7381 ggccatcggt acgcattcgc ggttcgccca cgggtgatct tcatagatag ccagcaacat
     7441 tggctcatca aacaacggca cttcaatgaa tgcttcgctc tctttcacca gcgcgaggat
     7501 cacgcaatcg agtttgccgc tgtccagttg cgccagtaac tggtgggtct gtgcttcatg
     7561 cagatacatt tccagctttg gaaatgtctg gtgcagcatc gggataatat gcggcagcag
     7621 gtacggtcca accgtaggaa tcaaaccaat atgcagcggt ccggacatcg tctcgccctg
     7681 ctggcttgcc atctctttaa ggactttcac ctcacgcagc acggtacgcg cctgatccac
     7741 cagcagcatt cccgcctggg tgaacaacac tttacggctg gtccgctcca gcaacatcac
     7801 gcccagctca tcttccagct tacgaatttg gccgctaagc gtcggctggc taacgtggca
     7861 ggaatctgcc gcacgccgaa aatggcggtg ttcagccaat gccaccaggt actcaagatc
     7921 acgaatattc attatccatc ctccatcgcc acgatagttc atggcgatag gtagaatagc
     7981 aatgaacgat tatccctatc aagcattctg actgataatt gctcacagaa acggagcggc
     8041 acctctttta acccttgaag tcactgcccg tttcgagagt ttctcaactc gaataactaa
     8101 agccaacgtg aacttttgcg gatctccagg atccgctttt ttttgccata aaaaagcccg
     8161 gcgataagcc aggctcaaat ttgtacatat aaatgttctt accccaaccg cgcctgcgca
     8221 aaagcaatcg cttgggccac ctgctgcggt gagacgccgc cttttgccgc acgcttgtcg
     8281 aggcacgatt gtagcgacag aatcggatag acatcttcgc caatcacgtg gctgaatttc
     8341 tgcaactcgt cgagcggcag atcttccagc ggtttgccct gacgaatggc ttccaccacc
     8401 gcttcaccca cgatatggtg cgcctcgcgg aaaggtacgc ctttcgccac caggtaatcc
     8461 gccagttcgg tggcgttggc gtaaccctgc tgagccgctt cctggcaacg tggacgtttc
     8521 acctgaatgc cgtccagcac cagcgccgcc atatgcaggc agtccagcca ggtatcgaac
     8581 gcgtcgaaca gaccttcttt gtcttcctgc atatctttgt tgtaagccag cggcaaacct
     8641 ttcagcgtca tcatcatgcc ggttaacgca ccctgcaccc gaccgcattt accgcgaatc
     8701 agctccagcg catccgggtt tttcttctgc ggcattaatg atgaaccgga agtcacgcgg
     8761 tcagaaagct ccacaaaccc cgcttcgccg gtgttaaaga aaatcagatc ttcagcaaaa
     8821 cgcgacagat gcaccatgcc gatagcggca gccgacagca gttccaacac atggtcacgg
     8881 tcagaaacgc tgtccagact gttacgggtc gccgaagcaa agcccagcca gcctgctaac
     8941 tgttcacggt cgatttcata ggccgttccc gccagcgcgc cacagcctaa tgggctgaca
     9001 tccagacgct taagcgcatc ctgcaaacgg ctttcatcac gcgccagcat ctcaacatag
     9061 gccaggcacc agtgcgcgaa cgtcaccggc tgggcgcgtt gcaggtgagt gtaacctggc
     9121 attaccgcgt cctgattgtt ttgtgcggtt tccaccagcg ccgattgcag ctgccggtta
     9181 gccgtcagta actcgctaac ggtatctttg caccacagtt tcaggtcagt cgctacctga
     9241 tcattacggc tacgcccggt atgcagcttt ttgcctaact ggcccacttt gtcgatcagt
     9301 ttgccttcca cccagctatg gatatcttcg gcgtcgcttt caaggatttg ttgtggcctg
     9361 gcgcgaacat cttccagcaa cacgttcagc gcctcttcca gttgcgcctg ctcttctgcg
     9421 gttaacacgc cgaccgttac cagggctttg gaccaggcca cagagccaac aatatcctgc
     9481 tccgccagac ggtaatcaaa gcgcagtgag tcgttgaatt gtttgaaccg ttgatctgct
     9541 gcctgggtaa aacgcccgcc ccaaagtgcc ataactctgt ttccttattt tgaaattcaa
     9601 tgccggaaag ctgcgcctcc ggctaacaaa acttaagcta aaatccgcgt acccatcggc
     9661 ataccgttaa acagtgccgg aagctgctcc gcatgacgcc aggaggcgat atctaccgga
     9721 cggcccagcg tgcgggccgc atccagcgcc gcgttcactt tcactatcat gccgtcagta
     9781 ataatgccct gctcaatcag ttgttctgct ttcgcggcgg tcatttcggc aatgcgttgc
     9841 cctttgccgt cgagaatgcc gctgacgtcg gagagcaaaa tcagatccgc gcccagcgtt
     9901 gccgccagcg ccgttgccgc ctggtcggca ttgacgttca tcagttgccc ttcgtctgtt
     9961 acgccaatgg agctgaccac cggcagataa ccgttctcca gcaaggagtt gataagctta
    10021 ggcgaacctg gctgcgccag tccaacatga cctaactctt catcaagctg ggtcactttg
    10081 acgctgtcgc catcaccgag aaacaaacct acagccgcaa tctgatgttt cttcgcccat
    10141 gccaacaggg ttttatttgc cgttcccgcc agtgctccgg tgataatgtc tatctgatca
    10201 gcaggcgtca cccgcaggcc gtttttcttt ttcaccggca gattcagccc tttcatcagc
    10261 tcatccacca cgcaaccgcc gccgtgcaca atcaccagcg gacgctgatg tgactcacga
    10321 taattcacca gtgcgctaaa cagacgttcc agcgcctctt cactatccag cagtacgccg
    10381 cccagtttga taattaatgg attcatcatt gcacccttaa ataagagact gcgtttccgc
    10441 atagccgaaa cgaatattgg cgcactgtac cgcttgtgcc gccgcgcctt tcagtaagtt
    10501 gtcttcggtc gccacaataa tcagatgctc gccctgaacg gcaaacccga tatcgcaaaa
    10561 tggcagccca acgacatttt tcagcgccgg aacgcctttg tcatacagcc gcaccagcgg
    10621 tttatgggca tacgcctgct gtaacacttg cgcgacttgc gcctgggtca cacccgattt
    10681 caggcggcag gtaatggttt cgagaatgcc gcgcgggaaa ttgcccagat gtggggtgaa
    10741 gataacgtca gcaccgaggt gtgtggcgat ctctggttga tggcgatgag taaagacgcc
    10801 atacggttgc aggctaactt cacaaaaact atttgaaatc gctgccttac gtcctgcacc
    10861 gctcacgccg ctggtggcgt taatcgccgg ccactgattg aggtcaagaa gatcggcatc
    10921 aatcaacggt ttcagcgcca gctgtgccgc cgtcggataa cagcctggca ccgcaatcaa
    10981 attcgcttct tttaatttat taccgcacca ctccgccaga ccgtaggctg cctgttccag
    11041 cagttccggg tattgatggg taaagccgta atatttttca tagaaggtgg cgtcgttaac
    11101 acgaaacgcg ccggaaaggt cgaacaccac gcagcccgct tcaagaaact gcggcgctaa
    11161 atcgtggcta acttcatggg cggtggcgag aaacactacg tccacccctg ggctaaactc
    11221 gctgatatcc gacatcggct gcaacggcag ctcaacgatg ccttttagct gcggatgcaa
    11281 atcggagatt aactttcccg catcattgct ttgcgctgaa acagtcaaag cggttatgtt
    11341 catatgcgga tggcgattta cataggtcac tagctctgcg ccagcgtagc cgctggcacc
    11401 cacaatcagc gtattcaaca tcggggctat tcaccttctt atgtctggtt gccaggttaa
    11461 acgtaaaaca ttcaccttac ggctggtggg ttttattacg ctcaacgtta gtgtattttt
    11521 attcataaat actgcatgaa tattgatact atcatgacca gaggtgtgtc aacaatgaaa
    11581 aacaaattac cgccatttat cgagatttac cgcgctctga ttgccacacc ttcaataagc
    11641 gctacggaag aggcactcga tcaaagcaat gcagatttaa tcactctgct ggcggactgg
    11701 tttaaagatt tgggcttcaa tgtggaagtg cagcctgttc caggaactcg caacaaattc
    11761 aatatgctgg caagtatcgg acagggggct ggcggcttgt tgctggcggg gcataccgat
    11821 acggtgccat ttgatgacgg tcgctggacg cgcgatccgt ttacactgac ggagcatgac
    11881 ggcaagcttt acggcttagg caccgccgac atgaaaggct tttttgcgtt tatccttgat
    11941 gcgctacgcg atatcgacgt cacgaaactg aaaaaaccgc tctacattct ggcgactgct
    12001 gatgaagaaa ccagtatggc cggagcgcgt tattttgccg aaactaccgc cctgcgcccg
    12061 gattgcgcca tcattggcga accgacgtca ctacaaccgg tacgcgcaca taaaggtcat
    12121 atctctaacg ccatccgtat tcagggccag tcggggcact ccagcgatcc agcacgcgga
    12181 gttaacgcta tcgaactaat gcacgacgcc atcgggcata ttttgcaatt gcgcgataac
    12241 ctgaaagaac gttatcacta cgaagcattt accgtgccat accctacgct caacctcggg
    12301 catattcacg gtggcgacgc ttctaaccgt atttgcgctt gctgtgagtt gcatatggat
    12361 attcgtccgc tgcctggcat gacactcaat gaacttaatg gtttgctcaa cgatgcattg
    12421 gctccggtga tcgaacgctg gccgggtcgt ctgacggtcg acgagctgca tccgccgatc
    12481 cctggctatg aatgcccacc gaatcatcaa ctggttgaag tggttgagaa attgctcgga
    12541 gcaaaaaccg aagtggtgaa ttactgtacc gaagcgccgt ttattcaaac gttatgcccg
    12601 acgctggtgc tcggtccggg ttccatcaat caagctcatc agcctgatga atatctggag
    12661 acgcggttta ttaaacccac ccgtgagttg attatccagg taattcacca tttttgctgg
    12721 cattaaaacg taggccggat aaggcgctcg cgccgcatcc ggcaccgttg ccaaactccg
    12781 gtgccgcaat aatgtcggat gcgatgcttg cgcatcttat ccgacctaca cctttggtgt
    12841 tatgtatggc gattttttaa catttccata agttacgctt atttaaagcg tcgtgaattt
    12901 aatggcgtaa attcctgcta tttattcgtt tgctgaagcg atttcgcagc atttgacgtc
    12961 accgctttta cgtggcttta taaaagacga cgaaaagcaa agcccgagca tattcgcgcc
    13021 aatgcgacgt gaaggataca gggctatcaa acgataagat ggggtgtctg gggtaatatg
    13081 aacgaacaat attccgcatt gcgtagtaat gtcagtatgc tcggcaaagt gctgggagaa
    13141 accatcaagg atgcgttggg agaacacatt cttgaacgcg tagaaactat ccgtaagttg
    13201 tccaaatctt cacgcgctgg caatgatgct aaccgccagg agttactcac caccttacaa
    13261 aatttgtcga acgacgagct gctgcccgtt gcgcgtgcgt ttagtcagtt cctgaacctg
    13321 gccaacaccg ccgagcaata ccacagcatt tcgccgaaag gcgaagctgc cagcaacccg
    13381 gaagtgatcg cccgcaccct gcgtaaactg aaaaaccagc cggaactgag cgaagacacc
    13441 atcaaaaaag cagtggaatc gctgtcgctg gaactggtcc tcacggctca ccctaccgaa
    13501 attacccgtc gtacactgat ccacaaaatg gtggaagtga acgcctgctt aaaacagctc
    13561 gataacaaag atatcgctga ctacgaacac aaccagctga tgcgtcgcct gcgccagtta
    13621 atcgcccagt catggcatac cgatgaaatc cgtaagctgc gtccaagccc ggtagatgaa
    13681 gccaaatggg gctttgccgt agtggaaaac agcctgtggc aaggcgtacc aaattacctg
    13741 cgcgaactga acgaacaact ggaagagaac ctcggctaca aactgcccgt cgaatttgtt
    13801 ccggtccgtt ttacttcgtg gatgggcggc gaccgcgacg gcaacccgaa cgtcactgcc
    13861 gatatcaccc gccacgtcct gctactcagc cgctggaaag ccaccgattt gttcctgaaa
    13921 gatattcagg tgctggtttc tgaactgtcg atggttgaag cgccccctga actgctggcg
    13981 ctggttggcg aagaaggtgc cgcagaaccg tatcgctatc tgatgaaaaa cctgcgttct
    14041 cgcctgatgg cgacacaggc atggctggaa gcgcgcctga aaggcgaaga actgccaaaa
    14101 ccagaaggcc tgctgacaca aaacgaagaa ctgtgggaac cgctctacgc ttgctaccag
    14161 tcacttcagg cgtgtggcat gggtattatc gccaacggcg atctgctcga caccctgcgc
    14221 cgcgtgaaat gtttcggcgt accgctggtc cgtattgata tccgtcagga gagcacccgc
    14281 cataccgaag cgctgggcga gctgacccgc tacctcggta tcggcgacta caaaagctgg
    14341 tcagaggccg acaaacaggc gttcctgatc cgcgaactga actccaaacg tccgcttctg
    14401 ccgcgcaact ggcaaccaag cgccgaaacg cgcgaagtgc tcgatacctg ccaggtgatt
    14461 gccgaagcgc cgcaaggctc cattgccgcc tacgtgatct cgatggcgaa aacgccgtcc
    14521 gacgtactgg ctgtccacct gctgctgaaa gaagcgggta tcgggtttgc gatgccggtt
    14581 gctccgctgt ttgaaaccct cgatgacctg aacaacgcca acgatgtcat gacccagctg
    14641 ctcaatatcg actggtatcg cggcctgatt cagggcaaac agatggtgat gattggctat
    14701 tccgactcag caaaagatgc gggcgtgatg gcagcgtcct gggcgcaata tcaggcacag
    14761 gatgcattaa tcagaacctg cgaaaaagcg ggtattgagc tgacgttgtt ccacggtcgc
    14821 ggcggttcca ttggtcgcgg cggtgcacct gcccatgcgg cactgctgtc acaaccgcca
    14881 ggaagcctga aaggcggcct gcgcgtaacc gaacagggcg agatgatccg ctttaaatat
    14941 ggtctgccag aaatcaccgt cagcagcctg tcgctttata ccggggcgat tctggaagcc
    15001 aacctgctgc caccgccgga gccgaaagag agctggcgtc gcattatgga tgaactgtca
    15061 gtcatctcct gcgatgtcta ccgcggctac gtacgtgaaa acaaagattt tgtgccttac
    15121 ttgcgctccg ctacgccgga acaagaactg ggcaaactgc cgttgggttc acgtccggcg
    15181 aaacgtcgcc caaccggcgg cgtcgagtca ctacgcgcca ttccgtggat cttcgcctgg
    15241 acgcaaaacc gtctgatgct ccccgcctgg ctgggtgcag gtacggcgct gcaaaaagtg
    15301 gtcgaagacg gcaaacagag cgagctggag gctatgtgcc gcgattggcc attcttctcg
    15361 acgcgtctcg gcatgctgga gatggtcttc gccaaagcag acctgtggct ggcggaatac
    15421 tatgaccaac gcctggtaga caaagcactg tggccgttag gtaaagagtt acgcaatctg
    15481 caagaagaag acatcaaagt ggtgctggcg attgccaacg attcccatct gatggccgat
    15541 ctgccgtgga ttgcagagtc tattcagcta cggaatattt acaccgaccc gctgaacgta
    15601 ttgcaggccg agttgctgca ccgctcccgc caggcagaaa aagaaggcca ggaaccggat
    15661 cctcgcgtcg aacaagcgtt aatggtcact attgccggga ttgcggcagg tatgcgtaat
    15721 accggctaat cttcctcttc tgcaaaccct cgtgcttttg cgcgagggtt ttctgaaata
    15781 cttctgttct aacaccctcg ttttcaatat atttctgtct gcattttatt caaattctga
    15841 atataccttc agatatcctt aaggaattgt cgttacattc ggcgatattt ttttcaagac
    15901 aggttcttac tatgcattcc acagaagtcc aggctaaacc cctttttagc tggaaagccc
    15961 tgggttgggc actgctctac ttttggtttt tctctactct gctacaggcc attatttaca
    16021 tcagtggtta tagtggcacc aacggcattc gcgactcgct gttattcagc tcgctgtggt
    16081 tgatcccggt attcctcttt ccgaagcgga ttaaaattat tgccgcagta atcggcgtgg
    16141 tgctatgggc ggcctctctg gcggcgctat gctactacgt catctacggg caggagttct
    16201 cgcagagcgt tctgtttgtg atgttcgaaa ccaacaccaa cgaagccagc gagtatttaa
    16261 gccagtattt cagcctgaaa attgtgctta tcgcgctggc ctatacggcg gtggcagttc
    16321 tgctgtggac acgcctgcgc ccggtctata ttccaaagcc gtggcgttat gttgtctctt
    16381 ttgccctgct ttatggcttg attctgcatc cgatcgccat gaatacgttt atcaaaaaca
    16441 agccgtttga gaaaacgttg gataacctgg cctcgcgtat ggagcctgcc gcaccgtggc
    16501 aattcctgac cggctattat cagtatcgtc agcaactaaa ctcgctaaca aagttactga
    16561 atgaaaataa tgccttgccg ccactggcta atttcaaaga tgaatcgggt aacgaaccgc
    16621 gcactttagt gctggtgatt ggcgagtcga cccagcgcgg acgcatgagt ctgtacggtt
    16681 atccgcgtga aaccacgccg gagctggatg cgctgcataa aaccgatccg aatctgaccg
    16741 tgtttaataa cgtagttacg tctcgtccgt acaccattga aatcctgcaa caggcgctga
    16801 cctttgccaa tgaaaagaac ccggatctgt atctgacgca gccgtcgctg atgaacatga
    16861 tgaaacaggc gggttataaa accttctgga tcaccaacca gcagacgatg accgcccgca
    16921 ataccatgct gacggtattt tcgcgccaga ccgacaagca gtactacatg aaccagcaac
    16981 gtacgcagag tgcgcgtgaa tacgacacca acgtgctgaa gccgttccag gatgtgctga
    17041 atgaccctgc gccgaagaaa ctgatcatcg ttcatctgct gggtacgcat atcaaataca
    17101 aataccgcta cccggaaaat cagggcaagt ttgatggcaa taccgatcat gttccgccag
    17161 gattaagcgc agaagagctg gaatcatata acgattatga caacgctaac ttgtataacg
    17221 atcatgtggt tgccagcctg attaaagact ttaaagcggc agacccgaac ggattcctgg
    17281 tttacttctc tgaccacggt gaagaggttt acgacacgcc gccgcacaaa actcaggggc
    17341 gtaacgaaga caacccgacg cgccacatgt acaccattcc gttcctgctg tggacgtcgg
    17401 aaaaatggca agcgactcat ccccgtgatt tctcacagga tgtcgatcgt aaatacagcc
    17461 tggcggaact gatccacacc tggtcagatt tggcgggctt atcttacgac ggttacgatc
    17521 caacccgttc agtggtgaat ccgcagttca aagaaactac ccgctggatt ggtaacccgt
    17581 acaagaaaaa cgcgctgatc gattacgaca ctctgccgta tggcgaccag gtaggtaatc
    17641 agtaattatc agccaggcgc tatttgccgg atgcgacgct tgacgcgtct tatccggcct
    17701 acagatcgcg gcggtaggct ggataaggcg tttacgccac atccggcaat acaactgccg
    17761 caatgtttac atcgaactcc cctcaggcca cacttttcag gtggcctttt ttaataatgc
    17821 cagttactgt tttcccgtct acatacctaa gggaataaca tgtatcacga catcagctat
    17881 ctgctctccc gcctgatcaa cggcccgctg tccctgcgcc agatttactt tgccagcagt
    17941 aacggcccgg tgcccgatct tgcgtatcag gtcgattttc cacggctgga aattgtgctg
    18001 gaaggtgagt ttgttgatac cggcgctgga gcaacgttag ttcccggcga tgtgctgtac
    18061 gttgccgctg gtggctggaa tttcccacaa tggaaaacac ccactaccac ctttagcgtg
    18121 ctgtttggca aacagcaact cggcttcagc gtcgtgcaat gggatggcaa acaatatcaa
    18181 aatctggcga agcaacacgt cgcccgacgc ggcccacgta taggttcttt tctgctacaa
    18241 acgctcaatg aaatgcaaat gcagccgcag gagcagcaaa cggcaaggct tatcgtagcc
    18301 agcctgctta gccactgccg cgatttgctc ggcagccaaa tccagaccgc ctcacgcagc
    18361 caggcactat ttgaagctat tcgcgattat atcgacgaac gctatgcctc cgcgcttacc
    18421 cgcgaatctg tcgcacaggc attctatatt tcaccaaact atctctcgca cctgtttcaa
    18481 aaaacggggg ccattggttt taacgaatac ctgaatcaca cgcgactgga gcacgctaag
    18541 acgttattga aaggctatga cctgaaggta aaagaagtgg cgcacgcctg cggctttgtc
    18601 gacagcaact acttctgccg tctgtttcgt aaaaacaccg aacgctcgcc gtcggaatat
    18661 cgccgacagt accacagcca actgacagaa aaaccgacta ctccagaata agatgggttt
    18721 gctgcggcgc agaaagcact ttgcgcaccg cgctcattac ccgctgcggc tcacgcagga
    18781 atgcgtagat gctgcattgc acatagcggc aatgttcaaa tcgctcggca ccggcaagct
    18841 cgatatccgt aatcaacaga gcaacatccg cccgacggat atcctcgtcc gctaaacgat
    18901 tctccgttcc cagcgcgccc tgagtttcaa tgctgacgcc ccacttctct aactggcaca
    18961 acttttccag ccgttccgcc gccatataag tatgcgccac gccgcttacg caggcggtta
    19021 ctgccaccag gtatgccatt ttaacctccc acggtaacct gaaatccggc ccgttctgcc
    19081 atttcgcgca tcgttgccac atcggctgat gacggcgcag caacatcctt catcgaccat
    19141 gttttcccca gcaggcggta tttcggctcg ccgtactgat gaaacggcaa cagatggatc
    19201 tgcctgatat tcagcgggat cagcacgtcc agcgcctgct gcatattctc ccggctgagt
    19261 gtgaaaccgg ggatcagcgg caaacgcggg atcacgttga caccctcact caccagcaaa
    19321 cgcaggttct ccagtacgcg tggcaggttc atcttcacca catcccgcgc ctgagtcgcg
    19381 tccataattt ttaaatcgaa caacacttca tcgcacaatt tcgccagcgg taacagcttg
    19441 ctggctggtg cgtctccggc agtttcaatg gcacatgaga caccccacag ccgcagtcgc
    19501 tgtaaaaaac gggtagcaaa ctccgcctgc attaacactt cgccgccaga aagcgtgacg
    19561 ccgccgccgg acgtgcgaaa aaaaatgtca tctttcatca cttcccgttc cagagcgtca
    19621 aggctgatat cgcgaccaat ccgttcaaac gccccggagg ggcattcatc cgcatcacgc
    19681 aaacatttcg cacagtgcag acatttcgcc tctctgcgta ccgtctggat tttgccggag
    19741 atcgactccg gattagcaca ccacgggcaa agatgcggac agcctttaaa aaagaccacc
    19801 gtacgaatgc cctcgccgtc attcagtgaa taacgctgaa tgttgaaaat gcgcgccaca
    19861 tcattgaggc gcgtttccac aacgttacag ctgatgcgct gtccggcgga tgatgtcatc
    19921 ctggatctcc ttcgacagtt cgacaaagaa ggcgctgtat ccggcaacgc gcaccaccag
    19981 cccggcataa tcttgtgggc gctgttgcgc ttcccacaac gtgtcggcgt tcaccacgtt
    20041 aaactgaata tgctgcaact taagctgggt aaacgcccgt aagaagtcgg ccagtttgcg
    20101 taatcccgct tcaccttcca gggtcgccgg agtgaatttc acgttcagca acgtaccgtt
    20161 agacagcagc gtattatcga gcttactgac tgacttcagt accgctgttg gcccttgttc
    20221 gtcctggccc agcataggtg acaagccgcc gtctgccagc tgttctccgg caaaacgacc
    20281 gtctggcgtc gcgccaacca ccgatcccaa cgggacgtga gcagaaacgg tatacgatcc
    20341 cggcgtgaag taaccaccgc gcgggttctg gtatttttcc acttctttgc agtagtggcg
    20401 caacagttcg gcgctaatgt tatccacctc gtcgatatcg ttaccatatt tctcaaagcg
    20461 gttaattaag cgagcgcgga ctttttcgcc ttctggcgtt gcaaagttgg cttttaatac
    20521 cgacagcaat tcgtcaaaac ttaaacgctg ttgctcaaaa accatccctt tcaacgcatg
    20581 gagagaatcg ctcaggttgg cgataccgat cccctgtacg ccggagaagt tataacgcgc
    20641 gccgccatcg gtaatatcgc gacctttttc cagacaatcg ctgataaaag acgagagcag
    20701 cggtacaggt gcccagtcgc gatggccgat atcacaaata ttgctgccct caaccatcag
    20761 ggtgatgtag tggctgatct tggcgcggat ctgctccagt aaaccttcat aagtcagcgc
    20821 agcattgcct tcattttcat gcaggcagat ttccatcact ttcagcagat taaacatcgc
    20881 gatgtcatgc aagccgtagg ttctgccggg aatagataat tccacacagc ccactacgga
    20941 atagtcgcgc gcatcttcca gcgaaacgcc acggttgagg aacgctggta ccaccacttc
    21001 atcgttaaag atttgcggaa taccggtgcc gaggcgaatg gtttcggcgg ttttcatcag
    21061 gaatggcgtg tcgatcaagg cgttagtgcg cacgccgagg ttcggttgcg gtaattgcac
    21121 gctttgatag gcgtcaaggc aaaggaacga aagcacgttc accgcgctac gtccgttctc
    21181 ggttaacccg ccgagcagtg cggtatagcc ggtcgggaaa cctgcgaaat aacgcgcgct
    21241 gctggtggag cgcaacagca cgatgtcgtt gcatttcacc cataaagatt cgagcagttc
    21301 tttcaggaac gccggatctt cgccctgggt taaagatgcc tgatagaacg gcaacatata
    21361 ctggtcgaag cgccctaaag acagcgaact ggcgttggat tcgtattgca gaatgatgtt
    21421 catgtaccag aataactggc acgcctgcca gaacgtctgc ggcttatgtt cggcgttatg
    21481 gcgagagatc tccgcaatag tcagcagttc ttcgcgacgc tgggcatctg tgcagtttgc
    21541 cgccatcgtt tccgccagta cagcgtaacg caaaatgtgt ttctgcgagg cttccagcag
    21601 taacagcgct gcctgataaa agtgattctc cggctgttgc tgacaatgtt gctgcatctg
    21661 tgccaccaac tcccccagcc cgtgattcaa caggcgtggg taatcaataa taatgtgccc
    21721 ctggccttta tccgtctggt taatgctgaa aatctgcgtg ctggtcgcgg cttttacttc
    21781 atccgtcatc tgcccgttga tgaaatcttt catcgaacgt ttttcccagt acgggaacaa
    21841 ctcttcacga tagatacgtt tatcttcttc gctgatagca aagcggtcct gcggacgcgt
    21901 cgggaattga tccagctctt tcagcagcca gtaagggtcc atttccggcg acataatccc
    21961 ggcgcgcggt tttacggtgc ggttaccggc aatcagttct tcatcacgaa tcgaaatttc
    22021 aacatgttca aggatatacg ctgttgcttt cgcccggcgc aatatcaccg gttcgccttc
    22081 ggtttgccga tggctggcgg tataaagcag cgcccgctcc agcgagattt cacgggtatt
    22141 ggcaaacagt gcagttttga ggcgagagat acgattcgtc atgaggaact cctgtgggaa
    22201 agcgaacccg cccttgcgag cgggagaaga acttaagcgg tttgcgccag gtgagcttca
    22261 attttgctca taatggcgtc agcacgtttt actgcatcgc tgatgttgac gcgcacgatg
    22321 gtcttgccag caaaacgctc ttcaaacttg atgccgatat ctttggtcag aatcaccata
    22381 tcagcgctcg ccacatcttc cgcagtcagt tcattttcca gaccaattga cccctgggtt
    22441 tctactttca cttcccagcc tttcgctttc gcggcacttt cccgcgcctc tgctgccata
    22501 taggtatggg caacacctga aggacatgcg gttactgcaa taattttcgt catggctcgt
    22561 tcctcaatta attaatttca aaatccaaat ccaggtcgtc ttctttttca tcagtcgaag
    22621 acccattttt acgcgccaga cttttcagca cgttcacaca aacagccgtc accactgctc
    22681 cgacagccac tgctgcgata taacccagct tgccttcaac caccggcagc acaatcagac
    22741 caccccagcc tgcatagcac tgcgcaccga ccagcgccgc agttactgca ccacaaactg
    22801 aaccgaccat gatggaagga atgacacgca gcggatcggc agcggcgaaa ggaatcgccc
    22861 cttcagtaac gccaacacag cccatcacca gtgccgcttt gccggtttcg cgctcttctg
    22921 cggagaaatt tttacgacca atcagcgtcg ccagccccat ccccagcggc gggatacaaa
    22981 tacccacggc agcgatgacc accacggtat aaacaccctg agcaacgcaa atcagcatga
    23041 aggcataggc tactttgtta accggaccgc ccatatcgaa cgccagcatc agacccatga
    23101 tcaccgccag cataacaatg ctgccctgct gcatcccctg aagccactga gtcaggctgt
    23161 tggtcaacgc ccctacaggc tcgcccaagc cccacatcat gatgcctgcg gtaatcagtg
    23221 tgccgacgat aggaataatg aagataggca tcaccgagcg cagaacttta tgcaccggaa
    23281 ttttcttcag gtaatgcacc acgatgccgc cgataatccc ggcgatcagt gcaccaaaga
    23341 agcccgcacc aaagctgtta ccaacccagg caccgatagc gcacggagcc agcgcagaac
    23401 gctctgcaat ggagtaacca atgtaagcgg cgaggaaagg caccatcagc gtcaaacctg
    23461 caacgccgat atcaaacagt tttttcaaat tcggatcggc tacggcatcc ggcactgcgc
    23521 ctttgccata caacatgacg gaaaccgcca gcaaaatacc gcccgatacc acgaagggaa
    23581 tcatgtgtga aacgcccgtc attaaatgac gacgggtatt tttcaggatc tgcaccaact
    23641 cattcataag ctgctcccgg gcttgcgaaa gcccatgtcc atatttttga tggaggaaac
    23701 aataggcaat cgcaggcgga gcaaacagtg gataaaaagg ccatttactg gacttttgta
    23761 atatcagtac aaaaatgcga tccgcctcat aacttgcgat aaaccggaag catgccgcaa
    23821 aacggcgtct tgtgagacgc gtcgcaaatt gacggttaca ttacatttgt ccagcttttg
    23881 gcagatttgt cacatggcag gccgttgccg tgcgctctta tcctgtaaac agaaaaccgt
    23941 accgggagag aggcaatggc cctgattgtg gaatttattt gtgagctacc taacggcgta
    24001 catgcgcgtc cggcaagcca cgttgaaacg ctgtgtaata ctttttcatc acaaattgag
    24061 tggcataacc tgcgcactga ccgcaagggc aacgccaaaa gcgcccttgc gctgattggc
    24121 accgatacgc tggcgggcga taactgccag ttactgattt ccggggccga cgaacaggaa
    24181 gcgcaccagc gtttaagcca atggctgcgc gatgaattcc cccactgcga tgcgccgctg
    24241 gcggaagtta aatctgacga actggaacca ctgccggttt cactgaccaa tctgaatccg
    24301 caaattatcc gcgcccgcac cgtgtgcagc ggtagtgcag gcggcattct gacgccgatc
    24361 tcttctttag atctcaatgc gctgagtaat cttcccgcag ccaaagacgt tgacgccgag
    24421 caatccgcac tggaaaatgg cctgacgctg gtactgaaaa acattgagtt tcgtctgctg
    24481 gatagcgacg gtgctaccag cgcgatactg gaagctcacc gatccctggc tggcgataca
    24541 tctttacgtc agcacttact gacaggcgtc agcgagggat taagctgtgc cgaagcgatt
    24601 gtcgccagtg cgaatcactt ttgcgaagag ttcgcccgtt ccagcagcag ctacctgcaa
    24661 gaacgtgccc tggacgtacg cgacgtctgc ttccagttac tccagcaaat ctacggtgag
    24721 caacgcttcc cggcaccggg caaactgacg cagcccgcca tttgtatggc tgatgaactg
    24781 actcccagcc agttcctcga actggataaa aatcacctca aaggtctgtt actgaaaagt
    24841 ggcggcacca cctcacatac cgtaattctt gcccgttcgt tcaacattcc gacactggtt
    24901 ggtgtagata ttgatgccct tactccgtgg cagcatcaaa cgatttatat cgacggcaac
    24961 gccggggcga ttgtggttga gccaggggaa gccgtggccc gttattatca gcaagaagcc
    25021 cgcgtacagg acgcccttcg tgagcaacag cgtgtctggc tgacccaaca agcccgtacc
    25081 gctgacggta tccgcattga aattgccgct aacatcgctc actccgtgga agcgcaggcc
    25141 gcattcggca atggtgcgga aggcgttggt ttgttccgca ctgaaatgct ctatatggat
    25201 cgcaccagtg caccgggcga aagcgagctg tacaacattt tttgtcaggc gctggagtct
    25261 gccaacggac gcagcattat tgtgcgcact atggacattg gcggcgacaa acccgttgat
    25321 tatctgaaca ttccggcaga agctaacccg ttcctcggtt atcgcgctgt gcgtatttat
    25381 gaagaatacg cctcgctgtt caccacacaa ctacggtcga tcctgcgcgc ctccgctcac
    25441 ggcagcctga aaatcatgat cccgatgatc tcctcaatgg aagagatctt atgggtgaaa
    25501 gaaaaactgg cggaagccaa acagcaactg cgtaacgaac acattccgtt tgatgagaag
    25561 atccagcttg gcattatgct ggaagtaccg tcggtgatgt tcatcatcga tcaatgctgc
    25621 gaagagattg atttctttag tattggtagt aatgacctga cgcaatatct gctggcagtg
    25681 gatcgcgata acgctaaggt tactcgtcac tacaacagcc tgaatccggc attcttgcgg
    25741 gcgctcgatt acgccgtgca ggcggtgcat cgccagggca aatggattgg tctgtgcggt
    25801 gagctgggag cgaaaggttc cgtgctgccg ttgctggtcg gcttagggct ggatgaactc
    25861 agcatgagcg caccatcaat tccggcggcg aaagcgcgga tgacgcaact tgatagccgt
    25921 gagtgccgca agttgctcaa ccaggcaatg gcctgccgta cttcgctgga agtggaacac
    25981 ctgctggcgc aattccgcat gacccaacag gacgcaccgc tggtcaccgc cgagtgcatc
    26041 acgctggaaa gtgactggcg cagcaaagaa gaagtgctca aaggcatgac cgataacctg
    26101 ctgctggcgg gccgctgccg ctatccgcgt aaactggaag ccgacttatg ggcgcgcgag
    26161 gccgttttct ctaccggtct gggctttagt tttgccattc cacacagcaa atcagaacac
    26221 attgagcaat ccaccatcag cgtggcgcgt ctgcaagcgc cggtgcgctg gggcgatgat
    26281 gaagcgcaat tcatcattat gttaaccctg aacaaacacg ctgcgggcga tcagcacatg
    26341 cgcattttct ctcgcctcgc tcgccgcatc atgcacgaag aattccgtaa cgcgctggtt
    26401 aacgccgcct ctgccgacgc tatcgccagc ctgctgcaac atgaactgga actgtaaaag
    26461 gaaacatcat ggaactgtat ctggacaccg ctaacgtcgc agaagtcgaa cgtctggcac
    26521 gcatattccc cattgccggg gtgacaacta acccgagcat tatcgctgcc agcaaggagt
    26581 ccatctggga agttctgccg cgtctgcaaa aagcgattgg tgatgagggc attctgtttg
    26641 ctcagactat gagtcgtgac gcgcagggta tggtggaaga agcgaagcgc ctgcgcgacg
    26701 ccattccggg cattgtggtg aaaatcccgg tgacttccga aggtctggcc gccattaaga
    26761 tgctgaaaaa agagggtatt actacgcttg gcaccgcagt gtacagtgct gcacaagggt
    26821 tactggccgc gctggcaggg gcaaaatacg ttgctccgta tgttaaccgc gtagatgccc
    26881 agggcgggga cggcattcgt acggttcagg agctgcaagc gctgttagaa atgcacgcac
    26941 cagaaagcat ggtgctggcg gccagcttta aaacgccgcg tcaggcgctg gactgtttac
    27001 tggcaggatg tgaatccatc accctgccct tagatgtagc gcaacaaatg ctcaacaccc
    27061 ctgcggtaga gtcagctata gagaagttcg aacacgactg gaatgccgca tttggcacta
    27121 ctcatctcta aaggagcaat tatggaccgc attattcaat caccgggtaa atacatccag
    27181 ggcgctgatg tgattaatcg tctgggcgaa tacctgaagc cgctggcaga acgctggtta
    27241 gtggtgggtg acaaatttgt tttaggtttt gctcaatcca ctgtcgagaa aagctttaaa
    27301 gatgctggac tggtagtaga aattgcgccg tttggcggtg aatgttcgca aaatgagatc
    27361 gatcgtctgc gtggcatcgc ggagactgcg cagtgtggcg caattctcgg tatcggtggc
    27421 ggaaaaaccc tcgatactgc caaagcactg gcacatttca tgggtgttcc ggtagcgatc
    27481 gcaccgacta tcgcctctac cgatgcaccg tgcagcgcat tgtctgttat ctacaccgat
    27541 gagggtgagt ttgaccgcta tctactgttg ccaaataacc cgaatatggt cattgtcgac
    27601 accaaaatcg tcgctggcgc tcctgcacgt ctgttagcgg cgggtatcgg cgatgcgctg
    27661 gcaacctggt ttgaagcacg cgcctgttcc cgtagcggcg ctaccactat ggcgggcggc
    27721 aagtgcaccc aggcggcgct ggcactggca gaactgtgct acaacactct gctggaagaa
    27781 ggcgaaaaag cgatgcttgc cgccgaacag catgtagtaa cccctgcgct ggaacgcgtg
    27841 attgaagcga acacctattt aagcggtgtt ggttttgaaa gcggcggact ggcggcggct
    27901 catgcggtgc ataacggcct gaccgctatc ccggacgcgc atcactatta tcacggtgaa
    27961 aaagtggcat tcggtacgct gacgcagctg gtactggaaa acgcgccggt tgaggaaatc
    28021 gaaaccgtag ctgcatttag ccatgcggta ggtttgccaa taactctcgc tcaactggat
    28081 attaaagaag atgtcccggc gaaaatgcga attgtggcag aagcggcatg tgcagaaggt
    28141 gaaaccatcc acaacatgcc tggcggcgcg acgccagatc aggtttacgc cactctgctg
    28201 gtagccgacc agtacggtca gcgtttcctg caagagtggg aataacctac tccaaactcc
    28261 cggcttgtcc gggagtttga acgcaaaatt gcctgatgcg ctacgcttat caggcctacg
    28321 caatctctgc aatatattga atttgcgtgc tttttaggcc agataaggcg ttcacgccgc
    28381 atccggcact ctgtgccagt aatctgaaac tcctacgttg ttcaggagtt ttttatccgc
    28441 ttctggacat tttctctaca gaacaatcgt tagcccggaa ggtcgaatct gtgactctta
    28501 ttttcacgga cgaaccagat gaaagcttca ctggcgctgc tcagcctgct aacggcattt
    28561 accagccact ccttaaaatc tcccgccgtt ccaccaaccg tggtacaaat ccaggccaat
    28621 accaaccttg ccatcgcaga cggtgccaga cagcaaatcg gcaacacgct attttacgat
    28681 ccggcgtatg tgcggcttac ctatcctggc ggtgatgtcc cgcaagaacg cggtgtatgt
    28741 tccgatgtgg tgatccgtgc attgcgcagc cagaaggtcg atttgcagaa actggttcac
    28801 gaagatatgg cgaagaattt tgccgagtac ccgcaaaaat ggaagttaaa gcgcccggac
    28861 agcaacatcg atcaccgtcg ggtgcctaat ctggaaacct ggtttagccg ccacaacaaa
    28921 acacgcccca tcagtaaaaa tgccggtgac tatcaagcgg gcgatattgt ctcctggcga
    28981 ttagataacg ggctggcgca tattggggtg gtgtcagatg gcttcgcccg cgacggtacg
    29041 ccactggtga tacataacat tggcgcaggc gcgcaggaag aagatgtgct gtttagctgg
    29101 cggatggtgg ggcattatcg ttattttgtt aaataagcga tcgccccaca tgaagaaaaa
    29161 attcagatgc tttttacact gacagcttct tttttcttac ggctcaccag cgccagtgcc
    29221 agcacaatca gcacaatacc gctaccttca acggcccccg gattctcacc gagcagccac
    29281 caggaaaaga gtacgccgca aacgggaacg gccagcgtgc ttaagctggc aatactggca
    29341 ggcaagtttt tcaatacaaa caaccataag ctccacgcca gcgccgtcgc cagaatcgca
    29401 ctgtaggcca gcgcccagaa cacggtgggc tgccagtcaa tttcacgttg cggcaccagt
    29461 aaagcgacca cactcatcac cagcgccgca tagagcatct gccaggatgt taacgataat
    29521 aaatccacgc gcggatgacg ggtgtatagg cgtttagcaa caatcgcgct cgccccccaa
    29581 ctaacaccgg agaggattgc cagcatggca cttttcatcg aagagaaatc gagttgccac
    29641 ggctgcaaca ccaaaaataa gccgaaagcg gcaatcagaa tcgcgaaata ttgcccacgt
    29701 cgcaggcgtt caccgagaaa caacgcggcg aaaatcacca cccagaacgg catggtatag
    29761 ctcaggatcg ccaccttccc cgcacctccg ctgaccaacg cccactgcgc cagaccaacc
    29821 atcccgcagg tttgtaacag ggcaatggct aaggtgtatt taaacggcgt cgggtgcatt
    29881 ccgcgaccac gtaataaaag gacgatgaat aaaacgagag cgccgaaaat gcagcgtaag
    29941 gcggtaaagt cgaaggcacc gatgtaactg gtgacttgct tcatgaaaat ccagctataa
    30001 ctccagataa gtgtgagcac aaccaggcca ctgattgcca gtgggttgct ctttcctgcg
    30061 gcagacatga gagatccagt gtgtagtttt cctgtggaca ctatacgccg gtaaagaaac
    30121 ttcagcgact gcctgaaaga cagtcactga agaaggtcag attacagcag gtcgaaacgg
    30181 tcgaggttca tcactttcac ccatgccgct acgaagtctt taacaaactt ctcgtgggca
    30241 tcgctgctgg cgtaaacttc cgctaccgca cgcaggacag agttagaacc aaataccaga
    30301 tccgcacggc tggctgtgta tttcacttcg ccggtttcgc ggtcacgtcc ttcgaacagc
    30361 tctttcgatt cgtcagtcgc tttccactcg taacgcatat ccagcaagtt cacgaagaag
    30421 tcattgctca atacgccaac gcggtcagtg aagacgccgt ttttgctgct atcgaagttg
    30481 gcacccagta cacgcatccc gcccaccagc gcagtcattt ccggcgcggt cagcgtcagt
    30541 tgctgtgctt tgtcgatcag cagtgactcg gtggtggaaa cgtccagacg agcgcgatag
    30601 ttacggaaac cgtcagcaat tggctccagc agctcaaaca tctcaatgtc agtctgatcc
    30661 tgacgcgcat caacgcgacc cggcgcaaac ggtacatgaa tgctcaaacc tgcggcgctt
    30721 gcggctttct caacaccaac cacaccagcc agcacgatga tatccgccag cgaggcttta
    30781 ccagactctt tctggatttt ctccagaaca ggcagagcac gaacggctgc ggcgttcaca
    30841 tcccagtcgc gctgcggcat taatgccaga cgcgcaccgt tggcaccacc gcgtttgtcg
    30901 ccaccacgga aggtagaagc agatgcccag gccaccgata ccagctcact aacagacaga
    30961 ccagaatccg caatcgcgaa tttcagatcg ataatgtcct gctcggtcgg gttgtagatc
    31021 ggctgcggca gcggatcttg ccagatcaga tcttctttcg gcacttccgg cccgatgtag
    31081 cgagatttcg gccccatatc cctgtgcgtc agtttgaacc aggcacgggc aaaggcttcg
    31141 ttgaacgcct gcggatcgtt gaggaaacga cgagagatct tctcgaactc aggatcaaaa
    31201 cgcagcgtca ggtcggtcac cagcattgtc ggtttacgtt tcttcgacgg atcgaacgga
    31261 tccgggataa tttccggtgc gtctaccgct tcgaactgga ttgctccagc cggactgcgg
    31321 gtctgtaccc actcatattt gaacaggttc tcgaagaaat agttgctcca ctgggtcggc
    31381 gtctgggtcc agacaacttc cagaccagag gtaatggcat ctgcgccaac gccgctgccg
    31441 taagtgctcg cccagcctaa accttgttct tcaatcggtg cagcttctgg atcaggacct
    31501 acatttgatg tcggaccggc accgtgagtt ttacccagcg tatgaccacc cgcaatcagc
    31561 gccacggttt cttcgtcgtt catgcccatg ttgccgaagg tcgcacggat agctgctgcc
    31621 gcagaaagcg gttcgccgct gtgatccggg ccttccgggt taacgtaaat cagacccatc
    31681 tcggttgcac ccagcggtgc tttcgccagc gcttccggat gacggtgagt cagccaggct
    31741 ttttcatcac cccagttaac atccagatcc ggttcccaga cgtcttcacg accggcacca
    31801 aaaccgaagg tacggaagcc ggagttttcc agcgccacgt tacctgcgag gataaacagg
    31861 tcggcccagg agattttctg accatatttc tgtttgattg gccacaacag gcgacgcgct
    31921 ttatcaaggc ttacgttatc cggccaggag ttcagcggtg caaaacgttg ctgaccacga
    31981 cccgcgccgc cgcgtccatc gattgaacgg taagtacctg cgccgtgcca ggccatacga
    32041 ataaacagac cggcgtagct gccccagtcg gctggccacc acggctgaga ttctgtcagc
    32101 agggctttca gatctttttt caggccgtag taatctaatt tgctgaattc tttgcggtag
    32161 tcaaagtcct cacccagcgg gttagaacga ttagaatgtt ggtttaacag gtcaacacgg
    32221 agttgatttg gccaccagtc gcgagtggtt gtgcccgccc ccgcgctctg gtcgtgaccg
    32281 ccctgatgga acgggcattt gccagtggct gtcgtgttat gaatatcgtc tgacgtgctc
    32341 atcaatgtgc tcccctctac agtgttaccg ttacgataca cagcgttaga gagaagttat
    32401 aattgaatta atccacggat gcgatagttg agatcttaca tattgttggt taaagagatg
    32461 taggtcaaat tgatcgtaat taagcttttt tgattatgtc cgaattcgga caaatgcttt
    32521 ataaaaaagg gttttagctt catatccttc aagtaatgag ggagaaaaca aggctgacaa
    32581 ccttattttc ccgccctcat ttcgaggcag cattttgtgc tctgtttaaa atttgtgatc
    32641 actgtgtgat tttcacaaaa gccacactat ttataaacca ggtcgaacac ccagcgtatg
    32701 gcaaatcgcg taactcattt cagcgcggtt aagcgtatag aagtggaaat ctttcactcc
    32761 ttcacggctt aaaatcttca ccatatccat ggcaatattc gcgcccacca gtttgcgggt
    32821 ttcggcatca tcatccaggc cgtcgaacat ttgcgccatc cacgccggaa tacgcacgtt
    32881 ggtcatatcg gcaaatttct tcgcctgttt aaagttagat accggcaaaa ttcccggaat
    32941 aatttccaca tcaatgcccg ccgatacaca gcggtcacga aaacgcaggt agctttcgac
    33001 atcgaagaag aactgagtaa tcgcgcggtt ggctccggca tcgactttgc gtttcagatt
    33061 aagcaaatcc gcctgagcgc tttttgcttc cgggtgaact tccggatacg ccgccacgga
    33121 gatatcgaaa tctgccactt cttttaatag cgtcaccagg tcagaagcat acatttctgg
    33181 cttaccactt cccggcggca gatcgccacg cagcgccacg atatgacgaa taccgttatt
    33241 ccagtagtcg cgtgcaatgg tgcgcaactc gtcgggcgtc gcatcaatgc aagtaagatg
    33301 cggtgccgct tccagaccag tgcgatcttt aatgccttta ataatgctgt gcgtacggtc
    33361 gcgctcgccg gagttcgcgc cataggtcac cgatacaaac ttcggtttca ggctgctaag
    33421 gcgatcgatg gagttccaca gggtctgctc catttcactg gtacgcggcg ggaaaaactc
    33481 gaacgaaacg ttaatctgcc cctggacttc tgccaggcgc tgattcaggg catcccgctg
    33541 gctggcgtga aaaaagctca taccttacct catcaatcgc ttgtagttat atgttgtgtt
    33601 gtgcacatct atccgtttag acgtccagat gtaaagatga aggaaaagcc gaagggcgtc
    33661 aaccgaaaaa tgaccaatga tggtgaggaa aaatcaggga agatgaaaaa acttcaggat
    33721 ggtaagaaaa agaaaatccg gtatgcaaag caaaccggac tgcaaatata aactaaccat
    33781 gtacttattg cttcttgccg gattcgtcgt aaacgcttaa tccggcctaa tcctatgata
    33841 attcaatata tttcattaga aaccataaac ccgaaaacat gagtaccggg cattattaaa
    33901 tttctgaaat tacaacaact gtgccagccg gttgatatcc gactgaatcg ccccggcggt
    33961 gacgtcgcgc cccgcgccag gcccacggat caccagcggg ttgtcgcgat accagcggct
    34021 ttcgatggca aagacgttat cgcacggcag cagtgatgcc agcggatggt cttcacgcac
    34081 cgcctccacg cccacacgcg ctttgccgtt ggcatcgaaa cgcgccacgt agcgcagcac
    34141 cagccccatt tcgcgggccg cttccagccg ttgcaccatc tgctcgttaa gttcatcgcc
    34201 attttcaaag aaatggtcga tgctgccgcc ttcgcaatga gcaggcacca gcgattccac
    34261 acgtacctgg tccggttcaa tgttgtaacc cgcttcacgc gccagaatta ccagcttgcg
    34321 cattacgtct ttgccggaga ggtcgtcacg cggatcaggc tcggttaagc cctgctgcca
    34381 cgcctgatcc accagctcgg taaacggcac gctaccgtcg aattgcagga acagccagga
    34441 gagcgtgccg gagaagatcc cgctgatcga caaaatagta tcgccgctgt cgatcagatc
    34501 gcgcacggtg tggttgatcg gcaagcccgc accgacggtg gcattgtaca gccagtgacg
    34561 cccggttttt tcgaaggcgt cgtggatctg gcgatattta ttgctgtcgc tggctcccgc
    34621 cagtttgttg gcgctgataa cgtggaaacc gtggctggcg aaatcaagat actgatcagc
    34681 aagctgctgg ctggcggtaa cgtccagcac cactaaatca tcatacggat gggcgcgcat
    34741 ccacaggaac aacgactctt catcctgctc aaccgcttca tcgttgaaga aggctaacgc
    34801 gcggctggcg tccagcccgt catagctcaa caggctgcgg cggctgtcca ccacacctgc
    34861 cagcacaaac tcaaagccgg tacgtgccga aagcgtgctc tgctcacggg cgaacagttc
    34921 cagccaacgg gaaccgatat tgcccttacc gaacaatacc aggccgatgc gtttttctgc
    34981 gcggaagacg gactgatgca gcccctgaat caggctttcg gtcgggccgg tgcgcagtac
    35041 tgccaccagg ctgatgccgt catcggactg ccaggtaaat tcgaccggct ggcctttcag
    35101 ttgctgccag aagcggtggc aatgcagcgg gttacgggtg acgcctgcac cgaccatcgc
    35161 caccagcgcc agcccctgac gcaggcgcag ttcgccaggt aatcccgctt cgtcgaggat
    35221 tttcagcgca ctgtcggcca cttctgaggt gtagcaaaat tgcagcaact ggcgatcgtt
    35281 atgtacgcca accgccagcg ggcgtacctg cgcgcgtttc aggatttggt cgatctcttt
    35341 atgcgccagt ttgaaatcct gactggcggg cacctgaaac tcaatcaaac agacatcatc
    35401 gtggctggtg acaatacgcg caccagtacc ggaggccagc acgcgttcaa tgcgcgtgga
    35461 accttgatcc ggcgtgtagc tacagcgcag ttgcaggtcg atttcgctgc cagaaaccgg
    35521 ctgtaaagta cgggcgtgaa gaacgggagc cgccaggcgc gccagttcgc tggcctcatc
    35581 cagacgcagc aacggcagca ggcaggcatc tttcacttta cgcgggtcgg cactgtatac
    35641 cccggcgacg tcgctccaga tggttacgcg agaaacaccc gccagcgcac cgatttgtgt
    35701 cgcggaatag tcggaaccgt tacgccccag cagcaccgtt tcaccggcgt tgttgcggct
    35761 gataaatccg gtcaccacca gacgtttgcc cggatgttgc accagcagct gttgcagcaa
    35821 cgggtaagaa agcccttcat caacctgcgg ttgtgcggcg cgttcagcgc gtaaaaactc
    35881 gcgggcatca agccaggccg ctggcagccc ttgttgatta agtaccgcag acatcaggcg
    35941 tgccgaccat acttccccgt ggcccaccac ttccgcatac actgcgtcgt taataccgct
    36001 gtcgagcagc gccgccaggc gctcaaggtc gctgacaaaa gcgctaatga ggctatcagc
    36061 ttcttcagcg ggtagcagac cgctaatcag atcgcactga tagcgacgca gcgtttgttg
    36121 aacctgatgc gcagagagac gatcggtctg gcttagtttc aaccagttaa tcaactggtt
    36181 agtggtgcta ccggcggcgg aaaccaccat catatcgtca ggctgagagt actccgccat
    36241 aatgcccgca acacgcaaat aacacttcac atcagccaga ctactgccac caaatttatg
    36301 cagttgacga cctttcgccc ctgcctgcgc aatcacactc atttttaccc cttgtttgca
    36361 gcccggaagc cattttccag gtcggcaatt aaatcttcgc catcttcaat accggtggag
    36421 atacgcagca gcgtctcgga gatcccggcg gcagcacgcg cttctggtgc catgcctgca
    36481 tgtgtcatgg ttgcggcgtg agagattaaa ctttccactc cccctaatga ttccgccagc
    36541 gtaaacaacg acagcccgcc caggaaacga cgcagcgtct gctcatcgcc atccagttca
    36601 aaactcaaca ttgcgccaaa gcctttttgc tggcgcgcgg caatttcatg cccctgattt
    36661 tccggcagcg acgggtgata cagttttttc accaacggct gggtttgcag atatttcaca
    36721 atcgcctgcg cgttgcgctg ggccagctcc atacgcggca ccagcgttcg caacccgcgt
    36781 agcagcagat agctgtcaaa cgcgccgccc gtcacgccaa tattgtttgt ccaccaggca
    36841 agttcagtga caacgtccgg gtctttagca atcaccacgc cagccaccac gtcagagtga
    36901 ccgttcagat atttcgtaca tgaatgcaac accagatcgg cacccaatgc cagcggattt
    36961 tgtaatgccg ggcttaagaa ggtgttatcc accacgctca ccgccccgac ttcccttgcc
    37021 agatggcaga ttttcgcaat atccacgacg cgtaacaatg gattacttgg gctttctacc
    37081 agtaccagtt taggtttttc tgccagcgct gcccgtaatg cctgttcatc gccttgatca
    37141 acaaacaaca cgcgatagca accgcgtttc gccagactgt cgaacaggcg atagctaccg
    37201 ccgtagcagt cgtgcggcgc aaccagcaga tcgccaggtt tcaaaaagac ggtcgttacc
    37261 aagtgaatcg cggacatgcc ggtattagta agtactgcgc cagcaccgcc ttccagttct
    37321 gccagcgcac gctgaaccac atcgcgcgtt gggttgccgc gacgcgagta atcatgcgcg
    37381 cgcggttcat taaatccggt aaagttatag gtgctggaaa gatggatggg agggacaacg
    37441 caaccatact gttcgtcgtc atttaacccg ctacgcactg cgatggtggc ctgtttacgc
    37501 gtcatgtgat gaagtttcct gggctttgtc ggtgaaatgt caggcaccag agtaaacatt
    37561 gtgttaatgg acgtcaatac atctggacat ctaaacttct ttacgtatag attgagcaaa
    37621 tcccaaatag ccgttaaaat tatatgcatt atcacgccga caggtgcatt acacgatgtc
    37681 acggtaacgc ctgtacggta aactatgcgg gtttacggtc agtacccaca taaattgtgt
    37741 ggtctggtct caatttattg acgaagagga ttaagtatct catggctgaa tggagcggcg
    37801 aatatatcag cccatacgct gagcacggca agaagagtga acaagtcaaa aagattacgg
    37861 tttccattcc tcttaaggtg ttaaaaatcc tcaccgatga acgcacgcgt cgtcaggtga
    37921 acaacctgcg tcacgctacc aacagcgagc tgctgtgcga agcgtttctg catgccttta
    37981 ccgggcaacc tttgccggat gatgccgatc tgcgtaaaga gcgcagcgac gaaatcccgg
    38041 aagcggcaaa agagatcatg cgtgagatgg ggattaaccc ggagacgtgg gaatactaaa
    38101 gcaaaaaaga gcggcgcgga gtggaatcgc ctgatgcgct acgcttatca ggcctacgtc
    38161 atattgcaat ttattgaatt tgcacgaact tgtaggccgg ataaggcgtt cacgccgcat
    38221 ccggcataaa caacgagcac gttgtctgcg acccaccgct ttttatacat ggacgtttaa
    38281 ctatgaaaaa caggctgctg atcctcagcc tgctggtttc tgtacctgcc tttgcctggc
    38341 agccacaaac cggcgacatc atctttcaga tctctcgctc atcgcaaagt aaagcgatcc
    38401 aactggcgac ccattccgat tatagccaca ccggtatgct ggtgatacgc aacaaaaagc
    38461 cctacgtttt tgaagcggtc ggcccggtga aatacacccc gctcaagcag tggatcgccc
    38521 atggtgaaaa gggcaaatac gttgttcgcc gcgttgaagg cggactgagt gttgaacaac
    38581 agcaaaaact ggcgcaaacg gtaaaacgtt atctcggtaa accgtatgat ttcagcttct
    38641 catggagcga cgatcgccag tactgttcgg aagtggtgtg gaaggtttac cagaacgcgc
    38701 tgggaatgcg cgtgggcgag cagcagaagt tgaaagagtt cgatctcagc aacccgctgg
    38761 tccaggctaa gctcaaagaa cgctacggca aaaatattcc gcttgaggaa acggtagttt
    38821 caccacaagc cgttttcgac gcgccacaac tcaccacggt tgccaaagag tggccgctgt
    38881 tttcgtggta atggatgatg aaaaaaataa ttcccgccgt agtctgtttg ttgctttgta
    38941 gttgcacgac ctttccgcaa actgtcgctc cggtaaacgg tgatgcctcc aattagttga
    39001 attaaggata taatactcgc ttttaaggtt gtttcatggt cacagttaac cttcattgcc
    39061 cccgttgcca gtccgttcag gtttaccgtc acgggcagaa cccaaaaaga catgatcgat
    39121 tccgcggccg tgactgtcac cgggtatttc agctcagtta ctgttacgag ccccgtaaac
    39181 cgggagttaa agaccaaatc gctgaaatga ctttcaacgg tgccggggtt cgcgatactg
    39241 cccgtacgct gaaaatcggc attaatacag tcatccgaac tttaaaaaac tctcgccacg
    39301 aagaataacg tcatccccgg tcgctcatgc tgatgtggca ctcatctgcg aacttagtca
    39361 gcaatggagc tttgtcggca gtaaagcgcg acagcactgg ctctggtacg tgtacaacac
    39421 gaaaactggt ggtgttctgg cctacacttt tggcccccgg actgacgaaa cctgtcgtga
    39481 attgctggcg ctgcttaccc ttttaccatc ggcatgttga ccactgacga atggggtagt
    39541 tacaccagag agttaccgaa ggaaaagcat ctgactggta agatttttac tcagcgcatt
    39601 gagcgcaaca atctgaccct gagaacccga atcaaacgtc tggcccgcag aaccatctgt
    39661 ttctcgcgct ctgtagaact tcatgaaaaa gtcatcggtg cttttatcga aaatatatgt
    39721 tctactaatt ggagtcatca cccttctgat gagctttcct tggatgatta ccagactgaa
    39781 tacacagcca aagattttta cctcattctg ctcttttttc tcaaatgaca tatattatat
    39841 tttacatcat attcataggc atatgacatt cccccgcccc cattatgtca ttgtgggttg
    39901 atgttgggct ttcataaaaa aaacatcttt ttttgaacta gcattaatta tatttacttt
    39961 atatattaaa atattttctc catctggaaa tattttagcc acacaatata aagcagctga
    40021 atccgaatta cttaaaaata tattatcatt acccataact ccagccatta aattactgga
    40081 gactaaagca aggaaataac aacattgtat tgccttcatt ttaattactc ccttgtctga
    40141 taattgtaac tccattccct ttagctttgg gattatattt tagataggtg ttatttggtg
    40201 ttcccaagta actgcttgta ttcttttttt cccattccat tcatataaga attcgttaaa
    40261 tctttgcttg aaaaatttag actatcataa acatcatttt cttttgttac tttatttcct
    40321 ttatcgtcag agtaaaaacc gtgagtgtga taatcgccta ctctctctga accttcaggg
    40381 cattttatat ttcgcaagtc tacactatca ttatcatttg aacttatcgg attcatgggg
    40441 aaatattcac cttgcttctt acatattagt ccaccatatt ctttattctc gttaattgat
    40501 tctccattac acat
//
LOCUS       DAJVUY010000013        40410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.013, whole genome shotgun sequence.
ACCESSION   DAJVUY010000013 DAJVUY010000000
VERSION     DAJVUY010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.013"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(115..2436)
                     /locus_tag="OQQ72_000661"
     CDS             complement(115..2436)
                     /locus_tag="OQQ72_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HCS2010498.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFITRYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ72_000662"
     CDS             complement(2533..3009)
                     /gene="greB"
                     /locus_tag="OQQ72_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312275.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HCS2010499.1"
                     /translation="MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSE
                     NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHR
                     FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP"
     gene            3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ72_000663"
     CDS             3237..3956
                     /gene="ompR"
                     /locus_tag="OQQ72_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HCS2010500.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ72_000664"
     CDS             3953..5305
                     /gene="envZ"
                     /locus_tag="OQQ72_000664"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HCS2010501.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
                     "
     gene            complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ72_000665"
     CDS             complement(5381..7003)
                     /gene="pckA"
                     /locus_tag="OQQ72_000665"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HCS2010502.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7382..9106
                     /locus_tag="OQQ72_000666"
     CDS             7382..9106
                     /locus_tag="OQQ72_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HCS2010503.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNCSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDVTFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ72_000667"
     CDS             complement(9241..10119)
                     /gene="hslO"
                     /locus_tag="OQQ72_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HCS2010504.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ72_000668"
     CDS             complement(10144..10545)
                     /gene="hslR"
                     /locus_tag="OQQ72_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HCS2010505.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ72_000669"
     CDS             complement(10556..11224)
                     /gene="yrfG"
                     /locus_tag="OQQ72_000669"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HCS2010506.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ72_000670"
     CDS             complement(11289..13424)
                     /gene="igaA"
                     /locus_tag="OQQ72_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HCS2010507.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRSQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDCHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ72_000671"
     CDS             13744..14304
                     /gene="nudE"
                     /locus_tag="OQQ72_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HCS2010508.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ72_000672"
     CDS             complement(14469..17021)
                     /gene="mrcA"
                     /locus_tag="OQQ72_000672"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HCS2010509.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLNEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ72_000673"
     CDS             17141..17920
                     /gene="hofM"
                     /locus_tag="OQQ72_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HCS2010510.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ72_000674"
     CDS             17920..18459
                     /gene="hofN"
                     /locus_tag="OQQ72_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofN"
                     /protein_id="HCS2010511.1"
                     /translation="MNPPINFLPWRQQRRTAFLCFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLRKQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ72_000675"
     CDS             18443..18883
                     /gene="hofO"
                     /locus_tag="OQQ72_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HCS2010512.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ72_000676"
     CDS             18873..19277
                     /gene="hofP"
                     /locus_tag="OQQ72_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HCS2010513.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ72_000677"
     CDS             19189..20427
                     /gene="hofQ"
                     /locus_tag="OQQ72_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HCS2010514.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ72_000678"
     CDS             20828..21349
                     /gene="aroK"
                     /locus_tag="OQQ72_000678"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HCS2010515.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ72_000679"
     CDS             21406..22494
                     /gene="aroB"
                     /locus_tag="OQQ72_000679"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCS2010516.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLSLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22586..23872
                     /gene="damX"
                     /locus_tag="OQQ72_000680"
     CDS             22586..23872
                     /gene="damX"
                     /locus_tag="OQQ72_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HCS2010517.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGDKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            23979..24815
                     /gene="dam"
                     /locus_tag="OQQ72_000681"
     CDS             23979..24815
                     /gene="dam"
                     /locus_tag="OQQ72_000681"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS2010518.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ72_000682"
     CDS             24833..25510
                     /gene="rpe"
                     /locus_tag="OQQ72_000682"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS2010519.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25503..26261
                     /gene="gph"
                     /locus_tag="OQQ72_000683"
     CDS             25503..26261
                     /gene="gph"
                     /locus_tag="OQQ72_000683"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HCS2010520.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ72_000684"
     CDS             26254..27258
                     /gene="trpS"
                     /locus_tag="OQQ72_000684"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS2010521.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27527..28432
                     /locus_tag="OQQ72_000685"
     CDS             27527..28432
                     /locus_tag="OQQ72_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010522.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28449..28811
                     /locus_tag="OQQ72_000686"
     CDS             28449..28811
                     /locus_tag="OQQ72_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS2010523.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28895..30058
                     /locus_tag="OQQ72_000687"
     CDS             28895..30058
                     /locus_tag="OQQ72_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HCS2010524.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30058..31284
                     /locus_tag="OQQ72_000688"
     CDS             30058..31284
                     /locus_tag="OQQ72_000688"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS2010525.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31281..32157
                     /locus_tag="OQQ72_000689"
                     /pseudo
     CDS             31281..32157
                     /locus_tag="OQQ72_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
     gene            32168..32521
                     /locus_tag="OQQ72_000690"
     CDS             32168..32521
                     /locus_tag="OQQ72_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HCS2010526.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32533..33837
                     /locus_tag="OQQ72_000691"
     CDS             32533..33837
                     /locus_tag="OQQ72_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfT family protein"
                     /protein_id="HCS2010527.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHSSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGA
                     IWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLV
                     AAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVF
                     EERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLIN
                     QAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISA
                     EVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAV
                     AIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA"
     gene            33849..34921
                     /locus_tag="OQQ72_000692"
                     /pseudo
     CDS             33849..34921
                     /locus_tag="OQQ72_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
     gene            complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ72_000693"
     CDS             complement(35073..35804)
                     /gene="phoB"
                     /locus_tag="OQQ72_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HCS2010528.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCKKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ72_000694"
     CDS             complement(35904..36689)
                     /gene="frlD"
                     /locus_tag="OQQ72_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HCS2010529.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ72_000695"
     CDS             complement(36686..37516)
                     /gene="frlC"
                     /locus_tag="OQQ72_000695"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HCS2010530.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNIVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ72_000696"
     CDS             complement(37566..38588)
                     /gene="frlB"
                     /locus_tag="OQQ72_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
                     /protein_id="HCS2010531.1"
                     /translation="MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDI
                     DRIYFVACGSPLNAAQAAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDY
                     GKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVV
                     LEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGP
                     LRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER
                     AINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYY
                     GGLVEY"
     gene            complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ72_000697"
     CDS             complement(38609..39997)
                     /gene="frlA"
                     /locus_tag="OQQ72_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HCS2010532.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGAQGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            complement(40242..40409)
                     /locus_tag="OQQ72_000698"
     CDS             complement(40242..40409)
                     /locus_tag="OQQ72_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HCS2010533.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS
                     KIIGGCGPTAQ"
BASE COUNT         9346 a        10245 c        11112 g         9707 t
ORIGIN      
        1 tgtggaataa aaaggccgga gatattctcc ggcactttta tgtcaggcaa ggcgttcgtt
       61 gccagatgcg gcgtgaacgc cttatcgcgc aggtttaggg gccagtccgg gcgtttaacg
      121 ttttttgccc attgccgccg ccagcgcatc catcatcgcg ctattaccgg caggctgcgc
      181 ttcacgaccg cgtggtttgg ctgccgggcg gttgttttgc gggcgttcat taccgccgcc
      241 gcgacgggcg ttggtttcgc caggctgctc gtccagacgc atagtcaggg cgatacgttt
      301 acgctgaaga tccacttcca gcactttcac cttcacaatg tcgcccgctt tcaccacggt
      361 atgcggatct tccacaaact tgttcgacaa tgaagagatg tgaaccaggc cgtcctgatg
      421 cacgccgata tcgacaaacg cgccaaagtt ggtgacgttg gtcaccgcac cttcgaggat
      481 catacccggt tgcaggtcgt tcattgtctc gacgccatcg gcaaactgag cggttttaaa
      541 ttccggacgc ggatcgcgac ccggtttttc cagctctttg atgatgtcag ttactgtcgg
      601 cacaccgaat ttttcatcag taaagtcaga cgctttcagg ttacgcagtt cgctgctgtt
      661 acccatcaga tctttcagtg cctgctgtgt tgctgccaga atgcgttcca ccaccggata
      721 ggcttccggg tggacggtag aagcatccag cgggttatca ccgtggttaa tgcgcaagaa
      781 gcccgcgcac tgctcgaagg ctttcggccc cagacggctg actttcagca gttgctgacg
      841 gttctggaac tggccgttct catcgcgcca ggccacgatg ttttgcgcca tcatgcgcgt
      901 caggcccgcc acgcgggtta acagcggaac agaagcagtg ttgagatcga cgccaacggc
      961 gtttacgcag tcttctacta ctgcgtccag tttgcgggcc agttgcgtct ggctgacgtc
     1021 atgctgatac tgacctacgc cgatagattt cggatcgatt ttcaccagct ccgccagcgg
     1081 atcctgcaaa cggcgggcga tagacaccgc gccacgcagc gaaacgtcga gatccgggaa
     1141 ctcctgcgct gccagctcgg aagctgagta aaccgacgcg ccagcttcgc tgacgatcac
     1201 tttctgtgcg gtcactttcg ggaactgctt ctgcacgtcg agatagaaac gttcagtttc
     1261 gcgggaagct gtaccgttgc cgatcgccac cagttcaacg ttatgttttt cacacaaggc
     1321 agcaacggtc atcgctgctt ttgcggcttg tccggtgtgc gggtaaatgg tatcggtcgc
     1381 taccagtttg ccagtggcat cgaccaccgc cacttttacc ccagtacgca gacccggatc
     1441 gaggcccatc gttgcacgca gtccggcagg ggccgccatc agcagatcgt gcaggttacg
     1501 ggcaaagacg ttgattgctt catcttccgc gcgttcgcgc acggtaccca tcagttcggt
     1561 ttccagatgc atcagcacct tgatgcgcca ggtccagctc actacgcctt tgcgccagct
     1621 atccgccggg gcattgttca ggcgcaggcc aaggtgatcc atgatgattt gctcgcaata
     1681 gctctctttg ggcggctcat cgaactgcgg atcggcattc agcgaaagct ggagtacgcc
     1741 ttcgttacgc ccacggaaca tcgccagagc gcggtgagaa ggcaccgtgg acaacggttc
     1801 gtgatgatcg aaatagtcgc ggaatttcgc cccttcctct tctttaccgc tcaccaccgt
     1861 agaaaccaaa tgcgcgttct tccacagata atcacgcact ttcgccagca gcgcggcatc
     1921 ttcggcaaac cgttccatca ggatatagcg cgcgccatcc agcgcggctt tggtatctgc
     1981 cacgccttta tcggcatcaa catattgtgc agcggcgact tctggcgtgt gtgacggatc
     2041 gctccacagc aggtcagcca acggctcaag ccctgcttca atggcgattt gcccgcgggt
     2101 gcggcgttta ggtttgtagg gcaggtagag gtcttcgagt tcggttttgc ttagggtggc
     2161 gttgatggcc ttcgccagat catcggtgag tttgccttgc tcggaaatgg acttgaggat
     2221 cgcctgacgt ctctcttcca gctcgcgcag atagctcaga cgcgtttcca gattacgcag
     2281 ctgcgtgtca tccagaccgc cggtgatttc cttacgataa cgtgtgataa acggcacggt
     2341 attcccttcg tcaagcaggc gaacggcagc gtcaacctgt tccgggcgcg cctgaatttc
     2401 acccgcaata atgcggcaga acgaatcatt catcatggtt tgagttcatc ttttcggatc
     2461 aaaaatcagg ggatagttat acggactggc tggcaaaaat gccagccatc ggcaggaggt
     2521 taagactctt ccttacggtt tcacgtactc gatagcatta acataccagc tcgcttcccc
     2581 ggcaggggta ttcaccaccg ccagatcgcc gacttctttt ttcagcaatg cgcgggccat
     2641 cggggaatcg atagagatgt aatctttacg gccaaaaatt tcatcgtagc cgacaatacg
     2701 gaaacggtga gtcacgccat cgtcgttttc aatctccacc cacgcgccaa aaaagacttt
     2761 gccttcctgc tgaggggagt aatcgacgat tttgagattt tccatgcatt tagtgagata
     2821 gcgcacgcga cggtcgattt cacgcagacg ctttttatta tactgatagt cagcattttc
     2881 gctgcggtcg cccagacttg cggcccaggt cacctttttt gtgacctccg ggcgttcttc
     2941 acgccagaga taattaagct cttgtttgag tttttcatac ccttcccggg taaccagggg
     3001 cgttttcatc tcgttgattc cctttgtctg tttgataatg cgcacattgg gtataacgtg
     3061 atcatatcaa cagaatcaat aatgtttcgc cgaataaatt gtatacttaa gctgctgttt
     3121 aatatgcttt gtaacaattt aggctgaaat tcataccaga tttagctggt gacgaacgtg
     3181 agctttttta agaatacacg cttacaaatt gttgcgaacc tttgggagta caaacaatgc
     3241 aagagaacta caagattctg gtggtcgatg acgacatgcg cctgcgtgcg ctgctggaac
     3301 gttatctcac cgaacaaggc ttccaggttc gaagcgtcgc taatgcagaa cagatggatc
     3361 gcctgctgac tcgtgaatct ttccatctta tggtactgga tttaatgtta cctggtgaag
     3421 atggcttgtc gatttgccga cgtcttcgta gtcagagcaa cccgatgccg atcattatgg
     3481 tgacggcgaa aggggaagaa gtggaccgta tcgtaggcct ggagattggc gctgacgact
     3541 acattccaaa accgtttaac ccgcgtgaac tgctggcccg tattcgtgcg gtgctgcgtc
     3601 gtcaggcgaa cgaactgcca ggcgcaccgt cacaggaaga ggcggtaatt gctttcggta
     3661 agttcaaact taacctcggt acgcgcgaaa tgttccgcga agatgagccg atgccgctca
     3721 ccagcggtga gtttgcggta ctgaaggcac tggtcagcca tccgcgtgag ccgctctccc
     3781 gcgataagct gatgaacctt gcccgtggtc gtgaatattc cgcaatggaa cgctccatcg
     3841 acgtgcagat ttcgcgtctg cgccgcatgg tagaagaaga tccagcgcat ccgcgttaca
     3901 ttcagaccgt ttggggcctg ggctacgtct ttgtaccgga cggctctaaa gcatgaggcg
     3961 attgcgcttc tcgccacgaa gttcatttgc ccgtacgtta ttgctcatcg tcaccttgct
     4021 gttcgccagc ctggtgacga cttatctggt ggtgctgaac ttcgcgattt tgccgagcct
     4081 ccagcagttt aataaagtcc tcgcgtacga agtgcgtatg ttgatgaccg acaaactgca
     4141 actggaggac ggcacgcagt tggttgtgcc tcccgctttc cgtcgggaga tctaccgtga
     4201 gctggggatc tctctctact ccaacgaggc tgccgaagag gcaggtctgc gttgggcgca
     4261 acactatgaa ttcttaagcc atcagatggc acagcaactg ggcggcccga cggaagtgcg
     4321 cgttgaggtc aacaaaagtt cgcctgtcgt ctggctgaaa acctggctgt cgcccaatat
     4381 ctgggtacgc gtgccgctga ccgaaattca tcagggcgat ttctctccgc tgttccgcta
     4441 tacgctggcg attatgctat tggcgatagg cggggcgtgg ctgtttattc gtatccagaa
     4501 ccgaccgttg gtcgatctcg aacatgctgc tttgcaggtc ggtaaaggga ttattccacc
     4561 gccgctgcgt gaatatggcg cgtccgaggt acgttcggtt acccgcgcct ttaaccatat
     4621 ggcggctggt gttaagcaac tggcggatga ccgcacgctg ctgatggcgg gggtaagtca
     4681 tgacttacgc acgccgctga cgcgtattcg cctggcgacc gagatgatga gcgaacagga
     4741 tggctacctg gccgaatcga tcaataaaga tatcgaagag tgcaacgcca tcattgagca
     4801 gtttatcgac tacctgcgca ccgggcagga gatgccgatg gaaatggcgg atctcaacgc
     4861 agtactcggt gaggttattg ctgccgaaag tggctatgag cgggaaattg aaaccgcgct
     4921 ttaccccggc agcattgaag tgaaaatgca cccgctgtcg atcaaacgcg cggtggcgaa
     4981 tatggtggtc aacgccgccc gttacggcaa tggctggatc aaagtcagca gcgggacgga
     5041 gccgaatcgc gcctggttcc aggtggaaga tgacggtccg ggaattgcgc cggaacaacg
     5101 taagcacctg ttccagccgt ttgtccgcgg cgacagtgca cgcaccatta gcggcacggg
     5161 attagggctg gcaattgtgc agcgtatcgt ggataaccat aacgggatgc tggagcttgg
     5221 caccagcgag cggggcgggc tttccattcg cgcctggctg ccagtgccgg taacgcgggc
     5281 gcagggcacg acaaaagaag ggtaaataaa cgggaggcga aggtgcctcc cgttttgctt
     5341 tctataagat actggataga tattctccag cttcaaatca ttacagtttc ggaccagccg
     5401 ctaccagcgc ggcacccgca ggggtgtcgg tgtatttatc gaagttgtcg ataaacagtt
     5461 tcgccagggt ttcggctttt tcctgccact gttccggaga agcgtaggtg ttacgcggat
     5521 cgagaatctt cgtgtctacg cccggcagtt cggttgggat cgccaggtta aacatcggca
     5581 gagtgaaggt ttctgcatta tccagcgaac cgttgaggat ggcgtcgata atggcgcggg
     5641 tatctttaat cgagatacgt ttgcctgtgc cgttccagcc agtgttaacc agataagcct
     5701 gcgcgcccgc cgcctgcata cgtttcacca gcacttctgc gtactgagtc gggtgcagcg
     5761 acaggaatgc cgcgccgaag caagcggaga aggttggcgt cggttcggtg atgccacgct
     5821 cagtaccggc cagtttggcg gtgaagccag agaggaagtg atactgggtt tgatcggcag
     5881 tcaggcgaga aaccggcggc aacacgccga aagcatcagc agtcaggaag ataaccttag
     5941 tcgcgtggcc cgctttggaa accggcttaa cgatgttatc gatgtgatag attggataag
     6001 aaacgcgggt gttctcggtt tttgaaccat catcaaagtc gatagtgcca tcttcacgca
     6061 cggtgacgtt ttccagcagc gcatcacgac ggatagcgtt gtagatttca ggttccgctt
     6121 ctttcgacag cttgatagtt tttgcgtagc agccgccttc gaaattaaac acgccgtcat
     6181 cgtcccagcc gtgttcgtca tcgccaatca ggcggcgttt cgggtcggtg gaaagggtgg
     6241 ttttaccggt gccggaaagg ccgaagaaca ccgcaacatc gcctttctcg ccaacgttgg
     6301 cggagcagtg catagaagcg atacctttca gcggcagcag gtagttcatc atcgagaaca
     6361 tccctttctt catttcgccg ccgtaccagg tgccgccaat cagctgcatg cgctcggtca
     6421 ggttaaacgc cacgaagttt tcggagttca gaccctgttc tttccactgc gggttagtgc
     6481 acttcgcgcc gttcataacg ataaagtctg gtttgaaacc tgccagctct tcatcgctcg
     6541 ggcgaataaa catgtttttg acaaaatgcg cctgccaggc cacttcggtg atgaaacgga
     6601 cggaaagacg agtatccggg ttcgcaccac agaaagcgtc gacaacgaac agacgtttgc
     6661 cggaaagctg cctggtcacc aggcctttca gatgctgcca ggtttccgga gagagaggtt
     6721 tgttgtcgtt cttacctttg cctttgtctg cccaccagaa agtatcgcga gtggtatcgt
     6781 cacggacgat atacttatct tttggtgaac gaccggtgaa gatcccggta tcgacggcaa
     6841 cggcacccag attagttaac accccgcgct cataacctgt caggctcgga tcgagctctt
     6901 cctgatacag caggtcgtag cttgggttgt aaacgatatc atgtacgtca ctgataccat
     6961 aagcctcgag ttcttgcggg gtcaaaccat tgttaacgcg catttcactg ctccttagcc
     7021 aatatgtatt gcctgaatag taaagtcttt ttgggggtgt taaccgcgac aaggctcata
     7081 gatttacgta tctggagaaa ttcatatttg acaaaaaacc ccgtgattcc tgttacgaaa
     7141 cggttgctat tatcgcagaa atagcatttt aggtgtggaa aatgttctca aaaggttaaa
     7201 tcttggttta tatggcggga atattgtgag tggaatcgca ttccttaatg aaattgatgc
     7261 aaattcaatc ggtaaagtat cgattcacca cgctaacttt ttttgattat tttctgaaaa
     7321 aagcaaaata ctactgcccg gatgcgataa ttaacccacc ttttgattct ggataaccaa
     7381 catggataac gttgaacttt caccggcaac acgctggggg atgattgcta ccggattact
     7441 tcaggggctg gtttgctacc tgttgatcgc ctggcttgcc ggaaaaaatc acagttggat
     7501 tgtttatggc gtgcctgcga ccgttgcgtt ttcatccgtt ttactcttct ccgtgatctc
     7561 ttttaaacag aagcgccttt ggggatggct ggcgctggtg tttattgcca cgacagggat
     7621 gagcggttgg ctgaagtggc aaactgatgg catgaacccc tggagagctg aaaaggcgat
     7681 ttgggatttt ggctgctatc tgctgttgat ggcaatgttg ttgctaccgt ggatacaaca
     7741 aagccttcgt atccgcaatt gcagtagccg ctatagctac ttttaccagt cagtatggca
     7801 taacgtactt atattactgg tgatttttct cgccaatggc ctgacgtggc tggtgctttt
     7861 actgtggggt gagttgttta aacttgttgg catcaagttt ttcaatacgc tcttttttgc
     7921 aaccgactgg tttatgtatc ttacattagg tctggttacc gcactggcgg tgattctcgc
     7981 gcgcacacag tcacgtttaa tcgactctat tcaaaagttg ttcacgttaa tcgccacggg
     8041 gttgctgccg ttagtatcat tgctaaccct gatgtttatc atcactctgc cgtttacggg
     8101 cctgagcgcg atttctcgcc acatctccgc cgccgggttg ctgttaacgc tggccttttt
     8161 gcaattgatc ttaatggcta ttgtccgcga tccgcaaaaa gcgtcacttc cctggacggg
     8221 gccgttgcgt tgcctgatta aaaccgcttt gctggttgct ccgctgtatg tgttcgtcgc
     8281 cgcctgggcg ttatggctgc gggtcgctca gtacggctgg actgtcgacc gcttgcaggg
     8341 cgcgctggcg gtgctggtgt tactggtgtg gtcgctgggg tattttgtca gtatcgtctg
     8401 gcgtaatggg caaaatcccc ttgttcttca gggcaaagtg aaccttgcgg tttcgttatt
     8461 ggtgttggtg atactggtgc ttcttaattc gccggtgctg gacagtatgc gtattagcgt
     8521 gaacagtcat atggcgcgtt atcagagcgg caaaaacacg ccagaccagg taactatcta
     8581 catgctcgaa cagagcggtc gctatggacg tgcggcgctt gagtcgctga aaagcgatgc
     8641 cgggtttatg aaagacccga aacgcgcgcg ggatctgctg atggcgttag atggagagca
     8701 acatcttcag gaacaggtat cggaaaaagt attagccgaa aatgtgttaa ttgcccctgg
     8761 ttctgttaaa ccggatgtga cattctggtc ggccttaatc caggatcgct ataacgtgat
     8821 gacctgtatt gaaaaagacg cctgcgtcct ggtcgagcaa gatctgaata gtgatggtca
     8881 ggcggagcgg atcctgtttg cttttaatga tgacagagtc attgtctatg gctttgactc
     8941 agacagaaaa gaatgggacg cgcttgatat gagtttactt ccgaacgaaa taacgaaaga
     9001 aaaattactc acagctgcga aggatggaaa actggggacg aggccgaaag cgtggcgcga
     9061 tctgacggta gatggtgaaa cgctggaaat aaacttaagt aagtgacaac gcttttatcg
     9121 gatacgacgc tgtatctgac caaaataatt tgcgatttat ttcataggcg ctggtaagcg
     9181 cagcacatca ggccattaag ttgtaaaatc cggcagagcc ctctctgccg gacatactca
     9241 ttaatgaact tgcggatctg ccggagacgc gttgttgcgg atttcagcaa tatccatcgc
     9301 attgaacaga tagtggttac cgcagtaatc acaatgcatg tcaatttcgc catcttccgc
     9361 caggatgcta tcaacttctt catcaggcag cgttttcagc gcatcggcgc aatgttcacg
     9421 cgagcaggtg catttgaact ccacatcctg cggatcgtaa accgtcacct cttcttcgtg
     9481 atacaaacgc cacaacactt cgtttgccgg taaggtcagc agttcttcgg ttttgatggt
     9541 ttcggttagc gtcgccaggt ggtcaaagtc gtcctgctgg gcattttgcg caggcattac
     9601 ctgcaacaac ataccgcctg cagccggttt gccgtctacg tcgccggtgc gaataaacag
     9661 gcgcgtcggc agctgttcag aacgcataaa gtaatcttcc aggcaggccg ccagggtatc
     9721 accttccaga ccaactacgc cctgatagcg ttcgccttcg ctcggggtaa tggtgatcac
     9781 cacgtaacca ttgccgacca gcgttttcag gtcggcattt tctggaattt cgccctgcac
     9841 gcgcgccaca ccgcgcattt gctggttatt gttaccgtta ataaccgcca gattcatcgg
     9901 accgtcgccc tgcagctgta cggtgatatc accatcaaac ttcagcgtag cggttaacag
     9961 gctggtcgca accagcagtt ctgccagcac gtttttaacg ggctgcggat aatcgtggtt
    10021 ctcaaggatc tgttgcaggg tttccgaaac ggttaccagt tcgccgcgaa cggcaaaatt
    10081 ttcaaacaga tagcgatgta attggtcatg ttgcggcata atcatctctc ttgcaggtga
    10141 cagttattca ctgtcgccgt gtttaaatcg taacaggtcg cggcgctctt ttttgtccgg
    10201 gcgtcggtcc gggtgcggca tggttaaggc attaagttta cgtgccatcg ccattttttc
    10261 gcgtttctct acactttccg cagtctcttc atacagcaag gctgcctcgc tggcggggcg
    10321 acgctgttca gtaatcgcct ttacaatcac cgtgcgttcg tcatttccct ggcgcagagt
    10381 gagcgtggca ttcagctcga cgattttgct cggcttgctg cgctgcccgt tgtaatgcac
    10441 cttaccgcct tcaatcattt cacgggccag cgcgcgggtt ttataaaaac gggcagccca
    10501 tagccattta tccagtcgaa cctcaacagc aggtttctct ttcatggcgt ctccttcaca
    10561 ttagcgaggg gatcaggcgg cggtagtcat tcagtgacgg atggcgttga tactgtttct
    10621 cggcaatccc ggaatcagga ttagtcacgc cgaggcagta acgaatacca aattgcgcgg
    10681 cagcatcgag aatcgcttcg ctgtcatcaa taaacagcgt tctttcagct ttcagacccg
    10741 tagcttcggc caccgcatgc cataaccgct gatcctcttt cggataacca aatgtgtggg
    10801 tggaaagtaa taaatcaagg tgtgcgtcca gacccgtatg ctcaagtttt accgccaggt
    10861 tgtgcggatg agcattggtg agcaaaattc gctgcttacc gctggctttc agtgcctcaa
    10921 gaaacggaat ggtatcttca cgcagtacgg cgcgcggtcc catctcggtg gtcattgcac
    10981 agatatccag acccagttgc tcactccagt aatcaagaca gtaccagttt agcgtatgct
    11041 gtacgtcgtg atattgctgg cgcatatatt ccatcgcttc ctgtggcgta accccgtttt
    11101 tcgcgcccca tgtttcaggc accagctttt gccagaaata gttatcgaag gcgaggtcga
    11161 gcaacgtgcc gtccatatcc agcagaacgg tatctacgtc ctgccaggca atgttgatat
    11221 gcatgaggga aatctccaga gtgaagcaat ttgcgcgaca gggtagcata acctgtcgcg
    11281 caaacgtgtt attcgataag gctttctgaa ggggtgatca gttgcgggtt caggcagctt
    11341 tcataatagg cctgaatctc catcatgcga gtgcgatgac gctggtaacg acgccaggcc
    11401 tgtacgccat tgtaaatggc gctacccagc atcgtcagta gcagcaatgt ggtgctgaga
    11461 tagcgccaca ggccggaacg atccgggatc ggatgaaggc caatatgctg cgtaccattg
    11521 gcgtcagtga agatttttgt gacgatacct tcggcgttaa acggcgtatg catcagcatt
    11581 tgtgccagtt tctggaaagc gttccactgt tcttgcggcg ggtagtcgta aagtgatgcc
    11641 gaaggccagg gctgatcaac aaaatcgctg ccttcgtcgc tgacaatcag gaatccgccg
    11701 ggggccggac tgtttagtga ttgtgccgct cgcgccgttt catgcgtgat aaacggcgcg
    11761 gtggaggttg ccaccaggtt atccagcgat tccgcactca ccgggcgtaa taacacattc
    11821 acgccatcga gcttcccggc gttggcgcgt tttaccagcg cgtcccagtc tttactgttg
    11881 ccgagattga ccagcgcatt tttcagtcgc acacagtcat ctttggcaga acataaatcc
    11941 gctgtcttca gtacaatgtc gccaaaatca tcaagcaata ccatgccgga tttttgaatc
    12001 gctgaacgta atgaggcact gacgcgagat tcatcttccg gtttagggtg cagctggcga
    12061 ttaactgctt cagtcaatgc cgtcgctttg ttgaccagtt cagattctgg taatggtaat
    12121 gagcgggcgt cattccagat gatctgcgag cagtcaaacg gtaaaaaagg tgaattggtt
    12181 ttcgcgctcc aggttccgga agtgcgaata ttacacattc ccgtaccgct aatacgcaat
    12241 gtatcgccta cccgcacgcc agcgtcagcc agttgtttta cgctggtggc ttcaatggtc
    12301 tgcgcgcctt tcatccatga gagagtgaat ttcagcggca tatccagcgg gatccagaat
    12361 aacagcataa acagcaccag cagcgagccc gcagcgataa tcgtactgcg cagccagtgc
    12421 tgtaacggaa agttttttac ttcatcatgc agcgaaagat atcgcccctg acgcactacg
    12481 tggcagtcga gatagatatc aatatcggtt tgttgatcga gatcctgagc aatgtatggc
    12541 tgccagtgtg cgggatagac caggtcgata ataccgagtg aaatattgtt gatctgttcc
    12601 tgatcgtttt cgccaaacaa tccccaacga cggggtgtac cgcgcagaca atgaatttcc
    12661 cgcagggagg attttgccgg gggcgcgaat agcccccaca gacctgcgcc cagcagcagt
    12721 aatgcgccgc ctgccagcca cggaacaaat acatccgggg taatcaggca gaaaaagaac
    12781 atcaggaagg aggcgacgat cagcaacgct tcacgcagcc cgcgcggacg actcagcgca
    12841 tattcttcat gcgtttcttt gcgaatattg agtagctcga tttgctcact ctcttccccg
    12901 cgaatcgacg cctgcgtgga cggaacaggt tgcaaggcat agccgcgcgt ttcctgcatg
    12961 tactcctgta gcgtatgacc gttgagtgaa ataaccaacg gcagcgaatc ggtatgaatc
    13021 agttcaacgg tattctcatc gttgatgtac tgttcccaga aggggggcag gtggacttct
    13081 accgaatcga ggtagtaacg ccatttattc ggatcgtcgg tagagatgcc gtaacgtgtg
    13141 atagcgtgtg tcagcatcat gacgttgttg ctttcggcat tcagcgccag agagatcggt
    13201 gccgcgctag ctcccgttgg gccaggcacc tgtaatacct gcgtcaggct ctcaagataa
    13261 ttttcaacgg cgctacgttc ttcaggtgtg agtttacgcg tttgcgcatc cgcgaaggcg
    13321 ttggtccagg gcagctgact ccgtctggat cgcactttta tcagccatcc cgcaagtagt
    13381 gagcaggcca gcaaagcagc taaaaaaatc acaatggtgc tcatgctttc cccatcttac
    13441 ttagtctgtc aggcgtggtc agtcgcacca gacacaatac atgattctgc ggttggctat
    13501 cggcaagcgt ggagtttaac ttgagcatca ttaagcacat cacagtaacc gctgatcata
    13561 gcaaaccctc tgaaggcgga atatcagcaa attcctagag ttatttcaac ctattgactt
    13621 ttaatttgat ttgaggacga ttatttatta agttacataa atgtaaataa catgcaattc
    13681 acattgccga aagcgtgtcc gatatcgcac aataaccgct gatttcacag catagatccc
    13741 acgatgagca aatcattaca aaaacccacc attctgaatg ttgaaactgt agcccgttcc
    13801 cgactgttta ccgtcgagag cgtggatctg gagttcagca atggcgtgcg gcgtgtttat
    13861 gaacgaatgc gtccaaccaa ccgggaagca gtgatgattg tgccgattgt ggacgatcac
    13921 ctgatcctga tccgcgaata cgcagtggga actgaatcct acgaattagg tttttcgaaa
    13981 ggattaattg atccgggtga aagcgtctac gaagccgcta accgcgagct aaaagaagag
    14041 gttggatttg gtgcgaacga tctgactttt ttgaagaagc tcagcatggc accgtcttac
    14101 ttttccagca aaatgaatat cgtggtcgcg caagatctct acccggaatc gctggaaggc
    14161 gatgagccag agccgctacc acaggtgcgc tggccgctgg cgcatatgat ggatttgctg
    14221 gaagaccctg acttcaacga agcgcgtaat gtcagcgcgc tgttcctcgt gcgcgaatgg
    14281 ttgaaagggc aggggcgagt gtaaatgcgt gaagtttgcc tgatgcacaa cgcttatcag
    14341 gcttatgggg ttcctgcaat atattgattt ttcacgattt tgttagccgg gtaacgcggt
    14401 cacccgcatc cagcataaac aaatgcactt tgtcagccaa ctgaaaaggc gccgaagcgc
    14461 ctttttaatc agaacaattc ctgtgcctca ccattatcga taatggtcgt tcccacctcg
    14521 tgcaccgcct gttgtgtcgg ctgcgtacct tcgatgaaat actcttcgcg gctgttgcca
    14581 ccattagcta actgcccggt gctgcgatcg atattcaccg tcacaatacc cggtggcggc
    14641 gtcagcggct gctccggcac accttcaaga acggctttca tataagcgtc ccatgcaggc
    14701 tgggcactct tggctccgcc ttcgtaacct gagatctgat ctttaatcgc tccggaagcc
    14761 gttgtatgac cgagattacg acggtgatca tcaaagccaa tccagaccga ggtcacaacg
    14821 cccggaccgt aacccgagaa ccacgcatct ttcgaactgt tagtggtacc ggttttcccg
    14881 ccgatatcgc gacgctgcaa atcacgacct gcacgccagc cagtaccctg ccagcctggc
    14941 tcaccaaaga tattggtgtt caaagcactc ttaatcagga atgccagcgg agtgttgatg
    15001 acgtgcggtg cgtactcctg cgcgccagtc ttcgccacta acgcctgatt tgcctgctcc
    15061 agctgcggca ttggtacaga aacattctgc tgctcgcggg agatagcgac atcttcaaca
    15121 tcgttatttt ccagcacgtt cgatttctgc gtatcaccgt aaatcaccgg aatatcgcat
    15181 tccgggcagg ctactttcgg tttcgcttcg aaaatcacgc cgccctgatc gttttcaatt
    15241 ttgctgataa accacgggtc caccaggaag ccgccgttcg ccatgaccgc gtagccgcgc
    15301 gccacctgca ttggggtgaa ggacgctgaa cccagcgcca gcgattcggt gtggacaatg
    15361 ttttgcgccg ggaagccgaa gcgttgcaga tattctgcag cgtagtcgac gcccatagcc
    15421 cgcattgcac gtaccatcac cacgtttttc gactgaccca gcccctgacg taagcgaatt
    15481 ggaccagcat attgtggcgg cgagtttttc ggctgccagt cagaaccggc acctgcgtcc
    15541 cagcgagaaa ttggcacatc gttcaacata cttgccagcg tcagaccttt atccatcgcc
    15601 gcggtgtaga ggaacggttt gatgttggaa cccacctgac gcagtgcctg ggtggcgcgg
    15661 ttaaacttgc tctgattgaa atcaaagcca ccgaccagcg ccataacggc accgttttgc
    15721 ggattgatcg acaccagcgc cgagttcact tccggcactt gtgccagcca ccatgcatcg
    15781 ccaacctgac gaacccagat ttgctgaccc gtttgcagaa catcggtcac tttacgcggc
    15841 gtcggtccct gctgagtatc cgaacggtaa ggacgcgccc agcgaacgcc ttccatactc
    15901 aatgcgacgg tcgacccgtc cgccagcatc gccgtcgctc cctgaggatt ggcgctggtg
    15961 actgcggcag gcagcagcgg accataggtc ggcagcgcct tcagcgtatc ggtaatcttg
    16021 ttgttatccc acgccgactc gcccactttc cacagcacat ttgccgggcc gcgatagccg
    16081 tggcgcatgt cgtagtccag cacgttatta cgtaccgcct gctgtgcggc ctgctgcact
    16141 ttgcgggtga tggtggtgta aatgcgataa ccgtcttcat aggcactttc gccataacgg
    16201 ttatacatct cctggcgcac catttcgttc aggtacggcg cagagaaagc aatctccggc
    16261 gcgtgatagt tagcgttaat cgcctcagtg cgtgtctgat cgaactgttg ttgggtgata
    16321 tacccttcat ccagcatccg cgacagtacg acgttacgcc gcgcgacggc acgatccatt
    16381 gagtagagcg gattaaaggt ggaaggcgct ttcggcagcc cggctatcac agccatttcg
    16441 ttcagcgtca gttggtcgac cgttttaccg aaatagactt gtgccgcagc accgacacca
    16501 taggcgcggt aaccgaggta aatcttattc agataaagct cgaggatctc gtctttcgtc
    16561 agcaactgtt caatgcgaat cgcgaggaag acttccttaa tcttacgcat cagcgtgcgt
    16621 tctggactga ggaagaagtt tctcgccagc tgctgggtaa tggtactcgc cccttgtgac
    16681 gcgtggccgg agaacagcgc cacacttgcc gcacggaaga tccccaccgg gtcaacgccg
    16741 tgatgctcgt agaagcggct gtcttccgtc gcgataaagg ctttcaccat ctccggcggg
    16801 atttgatcca acgtaaccgg aatacgacgt ttctcaccgt attgagcaat cagctcgcca
    16861 tcggcgctgt aaatctgcat cggaatttgc aggcgaacat cttttaatgt cgccacatcc
    16921 ggcagttgtg gctcgatgta gcggtatagg ccataaatcg agcctgctcc cagcagaatg
    16981 caacagactg caaggatcaa aaaatacttt acgaacttca ctggaaattt cccatttagt
    17041 ttcatttggg cagtttataa acaaacgcgc ggtagtataa aggcaagcca gacgcattga
    17101 tatacccgtc agagtgacgg gtgataagga gatcatcaca atggcattta agatctggca
    17161 aattggtttg catttacaac agcaagaagc ggtagcggtt gcgatcgtgc ggggcgcaaa
    17221 agaatgcttt ttgcaacgct ggtggcggtt gccgctggag aacgacatta tcaaagatgg
    17281 gcggattgtt gatgcgcagc agctggctaa aacgttgtta ccttggagtc gcgaactgcc
    17341 gcagcgtcat cacattatgt tggcgtttcc cgccagtcgc acattacagc ggtcatttcc
    17401 gcgcccgtcg atgtcccttg gtgagcggga gcaaacggcc tggctgtcag ggacgatggc
    17461 ccgcgagctg gatatggatc cggactccct gcgcttcgat tacagcgaag actcactcag
    17521 tcccgcctat aacgtgactg ccgcgcaaag caaagagctg gcaacgctgc ttactctggc
    17581 agaaaggttg cgtgttcatg ttagtgcgat caccccggat gccagtgcat tacagcgatt
    17641 cctgcctttt ttaccttctc atcagcaatg tctggcctgg cgtgataacg aacagtggct
    17701 gtgggcgacg cgctatagct gggggcgcaa actggcggtg gggatgacta gcgcgaagga
    17761 gctggcggca gcgttattcg ttgatcccga cagcgtcgcg atatgtggcg aaggcggatt
    17821 tgacccctgg gaggccgttt ctgttcgtca gccgctgcta ccgccgcctg gtggagactt
    17881 tgccatcgcg ctggggctgg cgcttgggaa ggcgtactga tgaacccgcc aattaatttt
    17941 ttgccctggc gacagcaacg ccggaccgct tttctgtgtt tctggttgct gatgttcgtt
    18001 gcgcctctgc tgctggccgt cgggataacg ctaatactgc gtctgacagg cagcgccgaa
    18061 gcgcgcatag acgcagtttt gcttcaggcg gaacaacaac tcgcccgcag cttacagata
    18121 acgaagccac gtttgctgga gcaacagcag ttacgcaaac agcgttcgca acggcagcgc
    18181 cagcgacaat ttacccgcga ctggcaatct gcgctggaag cactggcggc gcttttaccc
    18241 gagcacgcct ggctgacaac gataagctgg cagcagggaa cgctggagat caaggggctg
    18301 acaacaagca ttaccgcgtt aaacgcacta gaaacgtcac tccgccagga tgcgtctttt
    18361 catctcaatc agcggggagc cacgcagcag gatgcgcagg gacgctggca atttgagtat
    18421 cagttaacaa ggaaggttag cgatgaacat gttctttgac tggtggttcg ccacatcacc
    18481 ccgcctccgc cagttttgct gggcattctg gttgctgatg ttagttacgc tcatttttct
    18541 gtcatcgaca caccatgaag agcgcgacgc attaattcga ttacgggcaa gtcatcacca
    18601 gcagtgggcc acactgtatc gcctggttga caccactccc ttcagcgaag aaaaaacgct
    18661 gcccttttcg ccactggatt ttcagttgcc cggcgcgcaa ctggtttcct ggcatccatc
    18721 cgcgcaggga ggtgagttgg cgttgaaaac gctgtgggaa gcagtgccgt cggcattcac
    18781 acggctggca gagcgcaacg tcagcgtgag ccgtttttcg ttaagcgtgg aaggtgatga
    18841 tcttttgttc acgctacaac tggagacgcc gcatgagggt taaacgctgg ttgttggcag
    18901 gtattgcatt gtgcctttta accggtatgc gtgacccttt taaaccgccg gaagatctat
    18961 gccggattag cgaacttagc cagtggcgct atcaggggat ggtagggcga ggcgagcgca
    19021 tcatcggtgt aataaaagac gggcaaaaga aatggcgacg ggtgcagcaa aacgatgtgc
    19081 tggaaaacgg ctggacaatt ttacagctga cgccagacgt actaacgctg ggtaccggga
    19141 caaactgcga accgccacaa tggttgtggc aacggcaagg agatacaaat gaagcaatgg
    19201 atagccgcac tactgttgat gctgataccc ggcgtacagg cggcaaagcc gcaaaaagtg
    19261 acgctgatgg tggatgacgt tccggtagct caggtgttgc aggcgctggc tgaacaggag
    19321 aagttgaacc tggtcgtgtc gccagacgtc agcggtacgg tgtcgttaca tctaacagat
    19381 gttccctgga agcaggcact acaaactgta gtgaaaagcg ctggactgat aacgcggcag
    19441 gaaggcaaca ttctctcagt gcattccatt gcctggcaga ataacaatat cgcccgccag
    19501 gaggcggagc aggcgcgggc gcaggcaaat ctgccgctgg aaaatcgcag tataaccctg
    19561 caatacgccg acgcgggaga actggcgaaa gcgggggaga agctactgag tgccaaaggg
    19621 agtatgaccg tcgataaacg caccaatcgc cttttgctac gagataacaa aacggcgtta
    19681 agcgcgcttg aacagtgggt agcgcaaatg gatctgccgg tcgggcaggt tgagctgtcg
    19741 gcgcatattg tcaccattaa tgaaaaaagt ttgcgtgagt taggcgtgaa atggacgctg
    19801 gccgatgcgc aacacgctgg tggcgttggg caagtcacca cgcttggtag cgacctctcc
    19861 gtagcgacgg cgacaacgca tgtcggtttt aacattgggc gcatcaacgg acgcttgctg
    19921 gatcttgagc tttccgcgct cgaacaaaaa cagcagctgg atattatcgc cagtccgcgt
    19981 ctgctggcct cacatcttca gcctgccagc attaaacagg ggagcgaaat tccatatcag
    20041 gtttccagcg gggaaagtgg cgcgacgtcg gtggaattta aagaggccgt cctggggata
    20101 gaggtcacgc ccacggtgtt acaaaaaggt cgcatccggc tgaaattaca catcagccag
    20161 aacgttccgg ggcaggtgct acagcaggcc gatggcgaag tgctggcgat tgataagcag
    20221 gagatcgaaa cgcaggtcga ggtcaaaagc ggagaaacgt tggcgctggg cggcattttt
    20281 acccgtaaaa ataaatcggg tcaggatagc gtaccgttgc ttggcgacat tccctggttc
    20341 gggcaattat ttcgtcatga cggaaaagaa tatgaacgac gcgagttagt ggtgtttatc
    20401 acgccacgac tggtttccag tgagtaaaca gccgtaaaag cggtaatgtt tttatgctga
    20461 acgtgtttca tctatttgac gcgcgcaggt atttagcata caaggagtac cgatttgaga
    20521 gttggcgctc ttcgctgcct gcgttccatg atgatgattt atcattcagg cggcattttg
    20581 ctgtcttttt tacgctaatc ttacccggtg atttatcgcc agagcggtgg tagcaaggca
    20641 gcgcgcttgc agcgaccaga tatgcagagg gatgggtgat ttattcagtt gccaaacccg
    20701 ctggagtatt gagataattt tcagtctgac tctcgcaata tcttatgagg tttcagttca
    20761 tgtcctgcgg cgctctctga gcgaagcggg tttatcatta acgaatagtc ttagtagtac
    20821 cgaaaaaatg gcagagaaac gcaatatctt tctggttggg cctatgggtg ccggaaaaag
    20881 cactattggg cgccagttag ctcaacaact caatatggaa ttttacgatt ccgatcaaga
    20941 gattgagaaa cgaaccggag ctgatgtggg ctgggttttc gatttagaag gcgaagaagg
    21001 cttccgcgat cgcgaagaaa aggtcatcaa tgagttgacc gagaaacagg gtattgtgct
    21061 ggctactggc ggcggctctg tgaaatcccg tgaaacgcgt aaccgtcttt ccgctcgtgg
    21121 cgttgtcgtt tatcttgaaa cgaccatcga aaagcaactt gcacgcacgc agcgtgataa
    21181 aaaacgcccg ttgctgcacg ttgaaacacc gccgcgtgaa gttctggaag cgttggccaa
    21241 tgaacgcaat ccgctgtatg aagagattgc cgacgtgacc attcgtactg atgatcaaag
    21301 cgctaaagtg gttgcaaacc agattattca catgctggaa agcaactaat tctggcttta
    21361 tatacactcg tctgcgggta cagtaattaa ggtggatgtc gcgttatgga gaggattgtc
    21421 gttactctcg gggaacgtag ttacccaatt accatcgcat ctggtttgtt taatgaacca
    21481 gcttcattct taccgctgaa atcgggcgag caggtcatgt tggtcaccaa cgaaaccctg
    21541 gctcctctgt atctcgataa ggtccgcggc gtacttgaac aggcgggtgt taacgtcgat
    21601 agcgttatcc tccctgacgg cgagcagtat aaaagcctgg ctgtactcga taccgtcttt
    21661 acggcgttgt tacaaaagcc gcatggtcgc gatactacgc tggtggcgct tggcggcggc
    21721 gtagtgggcg atctgaccgg cttcgcggcg gcgagttatc agcgcggtgt tcgtttcatt
    21781 caagtcccga cgacgttact gtcgcaggtc gattcctccg ttggcggcaa aactgcggtc
    21841 aaccatcccc tcggtaaaaa catgattggc gcgttctacc agcctgcttc agtggtggtg
    21901 gatctcgact gtctgaaaac gcttcccccg cgtgagttag cgtcggggct ggcagaagtc
    21961 atcaaatacg gcattattct tgacggtgcg ttttttaact ggctggaaga gaatctggat
    22021 gcgttgttga gtctggacgg tccggcaatg gcgtactgta ttcgccgttg ttgtgaactg
    22081 aaggcagaag ttgtcgccgc cgacgagcgc gaaaccgggt tacgtgcttt actgaatctg
    22141 ggacacacct ttggtcatgc cattgaagct gaaatggggt atggcaattg gttacatggt
    22201 gaagcggtcg ctgcgggtat ggtgatggcg gcgcggacgt cggaacgtct cgggcagttt
    22261 agttctgccg aaacgcagcg tattataacc ctgctcaagc gggctgggtt accggtcaat
    22321 gggccgcgcg aaatgtccgc gcaggcgtat ttaccgcata tgctgcgtga caagaaagtc
    22381 cttgcgggag agatacgctt aattcttccg ttggcaattg gtaagagtga agttcgcagc
    22441 ggcgtttcgc acgagcttgt tcttaacgcc attgccgatt gtcaatcagc gtaacaacaa
    22501 gaaaggtcag gccgcttatc aagcggtcta ttagcttcag gttaattgca acgtggtaag
    22561 cattaacctt ttagtggggt gttaaatgga tgaattcaaa ccagaagacg agctgaaacc
    22621 cgatcccagc gatcgtcgta ctggtcgttc tcgtcaatct tctgaacgtt ctgagcgtac
    22681 tgaacgtggc gaaccgcaga tcaattttga tgatattgaa cttgatgaca ctgacgatcg
    22741 ccgtccgact cgtgcgcaaa aagagcgcaa tgaggaaccg gaaatcgaag aagaaattga
    22801 cgaatccgaa gatgaaaccg tggatgaaga gcgcgtagag cgtcgtccgc gtaagcgcaa
    22861 aaaagcagcc agtaaacccg cttctcgtca gtatatgatg atgggcgtcg gcattctggt
    22921 tctactgctg ttgatcatcg gtatcggttc tgcgctaaaa gccccctcga cctcttccag
    22981 cgatcaaacc gcgtctggcg ataagagtat tgatcttgca ggcaatgcga ccgatcaggc
    23041 gaatggggtg cagccagcgc cgggaaccac gtctgcggaa aatactcagc aggatgtttc
    23101 tctgccaccg atctcttcta cgccgactca agggcaaacc ccggcggcaa cggatggtca
    23161 acaacgtgtt gaagtgcagg gtgacctgaa caatgcgctg actcagccac aaaatcagca
    23221 acagttgaac aatgtggcgg tcaattccac attgccgacc gaacccgcga ctgtcgcgcc
    23281 tgttcgcaat ggcaatgcat cgcgtgacac ggcgaaaacg caaaccgctg aacgtccgtc
    23341 cactacgcgc ccagctcgtc agcaggcggt gattgaaccg aaaaaaccgc aagcaaccgt
    23401 gaaaacggag ccgaagccgg tagcacagac gccgaagcgt actgaaccag ctgcccctgt
    23461 ggcgagcacg aaggcaccgg ctgcgacttc tacgccagca ccaaaagaga cggcgactac
    23521 ggctccagta cagacggcat ccccggcgca aaccacggca acaccagccg ctggagggaa
    23581 gaccgcaggt aatgttggtt cgttgaaatc ggcaccgtcc agccattaca ctctgcagct
    23641 gagcagttcc tctaactacg acaacctgaa cggttgggcg aagaaagaga atctgaaaaa
    23701 ctacgttgtc tatgaaacga cgcgtaatgg tcagccgtgg tatgtcctgg tttctggcgt
    23761 gtacgcttcg aaagaagagg cgaaaaaagc ggtatctaca ttgccagcag atgttcaggc
    23821 caaaaacccg tgggcgaaac cgctgcgtca ggtacaggcc gatctgaagt aatcaaggtt
    23881 atctcccgca atggtttatc gttgcgggag ctgcctgaag cgctggatgc tgtcggagct
    23941 ttctccacag ccggagaagg tgtaattagt tagtcagcat gaagaaaaat cgcgcttttt
    24001 tgaagtgggc agggggcaag tatcccctgc ttgatgatat taaacggcat ttgcccaagg
    24061 gcgaatgtct ggttgagcct tttgtaggtg ccgggtcggt gtttctcaac accgactttt
    24121 ctcgttatat ccttgccgat atcaatagcg acctgatcag tctctataac attgtgaaga
    24181 tgcgtactga tgagtacgta caggccgcac gcgagctgtt tgttcccgaa acaaattgcg
    24241 ccgaggttta ctatcagttc cgcgaagagt tcaacaaaag ccaggatccg ttccgtcggg
    24301 cggtactgtt tttatatttg aaccgctacg gttacaacgg cctgtgtcgt tacaatctgc
    24361 gcggtgagtt taacgtgccg tttggccgct acaaaaaacc ctatttcccg gaagcagagt
    24421 tgtatcactt cgctgaaaaa gcgcagaatg cctttttcta ttgtgagtct tacgccgata
    24481 gcatggcgcg cgcagatgat gcatccgtcg tctattgcga tccgccttat gcaccgctgt
    24541 ctgcgaccgc caactttacg gcgtatcaca caaacagttt tacgcttgaa caacaagcgc
    24601 atctggcgga gatcgccgaa ggtctggttg agcgccatat tccagtgctg atctccaatc
    24661 acgatacgat gttaacgcgt gagtggtatc agcgcgcaaa attgcatgtc gtcaaagttc
    24721 gacgcagtat aagcagcaac ggcggcacac gtaaaaaggt ggacgaactg ctggctttgt
    24781 acaaaccagg agtcgtttca cccgcgaaaa aataattctc aaggagaagc ggatgaaaca
    24841 gtatttgatt gccccctcaa ttctgtcggc tgattttgcc cgcctgggtg aagataccgc
    24901 aaaagccctg gcagctggcg ctgatgtcgt gcattttgac gtcatggata accactatgt
    24961 tcccaatctg acgattgggc caatggtgct gaaatccttg cgtaactatg gcattaccgc
    25021 ccctatcgat gtacatctga tggtgaaacc cgtcgatcgc attgtgcctg atttcgctgc
    25081 cgctggtgcc agcatcatta cctttcatcc agaagcctcc gagcatgttg accgcacgct
    25141 gcaactgatt aaagaaaatg gctgtaaagc gggtctggta tttaacccgg cgacacctct
    25201 gagctatctg gattacgtga tggataagct ggatgtgatc ctgctgatgt ctgttaaccc
    25261 aggttttggc ggtcagtcgt tcattccaca aacactggat aaactgcgcg aagtacgtcg
    25321 tcgtatcgac gagtctggtt ttgacattcg actggaagtg gacggtggcg tgaaggtgaa
    25381 caacattggc gaaatcgctg cggcgggcgc ggatatgttc gtcgccggtt cggcaatctt
    25441 cgaccagcca gactacaaaa aagtcattga tgaaatgcgc agtgaactgg caaaggtaag
    25501 tcatgaataa gtttgaagat attcgcggcg tcgcttttga tctcgacggt acgctggttg
    25561 acagtgctcc cggtcttgct gctgcggtag atatggcgct gtatgcgctg gagttacccg
    25621 tcgcaggtga agaacgcgtt attacctgga ttggtaacgg cgcagatgtt ctgatggagc
    25681 gtgcattggc ctgggcgcgt caggaacgtg cgactctgcg taaaacaatg ggtaaaccgc
    25741 ccgttgatga cgacattccg gcagaagaac aggtacgtat tctgcgtaaa ctgttcgatc
    25801 gctactatag cgaggttgcc gaagagggga cgtttttgtt cccgcacgtt gccgatacgt
    25861 tgggcgcgtt gcaggctaaa ggcctgccgc taggcctggt caccaacaaa ccgacgccgt
    25921 tcgtcgcgcc actgctcgaa gccttagata ttgccaaata ctttagcgtg gttatcggcg
    25981 gcgatgatgt gcaaaacaaa aaaccgcatc cggacccgct gttactggtg gctgagcgga
    26041 tgggaattgc cccacaacag atgctgtttg tcggcgactc acgcaatgat attcaggcgg
    26101 caaaagcggc aggttgccca tcagttggct taacctacgg atataactac ggcgaggcta
    26161 tcgatctcag ccagcctgat gtaatttatc agtctataaa tgaccttctg cccgcattag
    26221 ggcttccgca tagcgaaaat caggaatcga aaaatgacta agcccatcgt ttttagtggc
    26281 gcacagccct caggtgaatt gaccattggt aactacatgg gtgcgctgcg tcagtgggta
    26341 aacatgcagg atgactacca ttgcatttac tgtatcgttg accaacacgc gatcaccgtg
    26401 cgccaggatg cacagaagct gcgtaaagcg acgctggata cgctggcctt gtatctggct
    26461 tgtggtatcg atcctgagaa aagcaccatt tttgttcagt cccacgtacc agaacatgcg
    26521 cagttaggct gggcactgaa ctgctatacc tacttcggcg aactgagccg catgacccag
    26581 tttaaagata aatctgcgcg ttatgccgag aacatcaacg ctggtctgtt tgactatccg
    26641 gtgctgatgg ctgcggacat cctgctgtat caaactaatc tggtaccggt gggtgaagac
    26701 cagaaacagc acctggaact gagtcgcgat atcgcccagc gtttcaacgc gctgtatggc
    26761 gagatcttta aggtgccgga gccgtttatt ccgaaatctg gcgcgcgcgt aatgtcgctg
    26821 ctggagccga ccaagaagat gtccaagtct gacgataacc gcaataacgt tatcggcctg
    26881 ctggaagatc cgaaatcggt agtgaagaaa atcaaacgcg cggtcactga ctccgacgag
    26941 ccgccggtag ttcgctacga tgtgcagaac aaagcgggcg tttccaacct gctggatatc
    27001 ctttctgcgg taacgggcca gagcatccca gaactggaaa aacagttcga aggcaagatg
    27061 tatggccatc tgaaaggtga agtggctgat gccgtttccg gtatgctgac tgaattgcag
    27121 gaacgctatc accgtttccg caacgatgaa gccttcctgc aacaggtgat gaaagacggc
    27181 gcagaaaaag ccagtgtaca cgcttcccgt acgctgaaag cggtgtacga agcgattggt
    27241 tttgtggcga agccgtaata tcaaaacgct cggacggtcc cctcgcccct ttggggagag
    27301 ggttagggtg aggggagcag gcaagcgcca gtgggaatta ccctttgctc gcattgtcga
    27361 ataaatcact tcgtcatcac tctgaaaccg gggaaacccg gtttttttat cctcatttgc
    27421 aataatccga aaaaatgtga agcgcctcgc cgtttccaca tctcacagtt gccacttatc
    27481 ttcattttaa tgaagatata aacattcatt ttattgaaaa tatattatgc gtcgaacgtt
    27541 tatcaaaaaa gaaggcgtcg tcatcacgac gctggcccgt tatttgttgg gtgaaaaatg
    27601 cggtaatcga ctgaaaacca tagatgagct ggcaactgaa tgccgttcat cggttggcct
    27661 gacgcaggcc gcgttgaaaa cgttggaatc aagtggagcg atacggattg aacgccgtgg
    27721 gcgcaatggc agttatctgg tcgaaatgga taacaaagcg ctgctgagtc atgtggatat
    27781 caataacgtt gtgtgtgcca tgcctttgcc ctatacccgc ttgtacgaag gtttagcaag
    27841 cgggctgaaa gcccagtttg atggcattcc tttttattat gcgcatatgc gtggcgcgga
    27901 tattcgtgtg gagtgtttgc ttaacggtgt ctatgacatg gcagtagttt cccgcctggc
    27961 ggcggaaagt tatctcagcc aaaacaattt gtgcatcgcc ctcgagcttg gcccgcatac
    28021 gtatgttggt gaacatcaac tgatatgccg caaaggtgag tctggaaatg ttaagcgagt
    28081 aggtctcgat agtcgttcgg cggatcagaa aatcatgacc gatgtctttt ttggcgatag
    28141 tgatgtggaa cgtgtcgatc tctcttatca cgagagttta caacgcattg ttaaaggcga
    28201 tgtcgatgcg gttatctgga acgtggtggc ggaaaacgaa ctgaccatgc tgggattaga
    28261 ggcgacgccg ctcacagacg atccgcgatt tttacaggcc accgaagccg tggtcctgac
    28321 gcgagtcgat gattacccaa tgcaacaact gctgcgtgcc gttgtagata aacacgccct
    28381 gctcgcccat caacaacggg tagtgagtgg ggaacaggaa ccgagttatt aaacgaaagg
    28441 catctgatat ggaaaccaga ctcaacctgc tttgcgaggc aggcgttatt gataaggaca
    28501 tctgcaaagg catgatgcag gtcgtcaacg tactggaaac agagtgccat ctgccggtgc
    28561 gcagtgagca aggaacgatg gcgatgacac atatggcgag tgcactgatg cgcagtcgcc
    28621 gtggtgaaga aatagagccg ctggataacg aattgctggc agagctggcg caatccagcc
    28681 actggcaagc cgttgtgcaa ttgcatcagg tgttgttgaa ggaattcgca ctggaagtta
    28741 atccgtgtga agaaggctat ttgctggcca acctttatgg attatggatg gctgctaacg
    28801 aagaggtttg aagctcccga caaatccacg tcgcacaacc taaatattca aaaaaatgaa
    28861 tatttaattc aaggaacaga aacgaggcaa caagatgttt gtagaagcat tgaaacgcca
    28921 gaacccggcg ctgatttccg ccgcactaag tttgtggcag cagggcaaga tcgccccgga
    28981 cagctgggtg atcgacgtgg atcaggtact ggaaaacggt aagcgactga ttgagacggc
    29041 gcggctttac ggcattgaac tgtatctgat gaccaagcag tttggccgta acccatggct
    29101 ggcggaaaaa ttgctggcat taggttacag cggcattgtg gcggtggatt acaaagaggc
    29161 gcgagtcatg cgccgcgctg gtttgtcggt ggcgcatcag gggcatctgg tacaaatccc
    29221 ttgtcatcag gttgctgacg ccgttgaaca gggcaccgac gtcatcaccg tgtttactct
    29281 cgacaaagcg cgggaagttt ctgcggcagc ggtgaaggcc ggacgtgtgc agtttgtgct
    29341 gctcaaagtt tatagcgacg atgattttct ttatccgggg caggagagcg gttttgtaca
    29401 gcattcgctg cacgaggtgg ttgctgaaat taagaaactg ccgggtctgc atttagccgg
    29461 acttacccat ttcccttgcc tgctttggga tgaggctgcc ggaaaagttt tgccgacacc
    29521 gaatcttcac acgctgatac aggcacggga tcaactggcg aaatctggta ttgcacttga
    29581 gcaactgaac gcgccttcag cgaccagctg cacttcgctg ccattactgg cgcaatacgg
    29641 tgtgactcat gccgaacccg gtcatgcgct gacgggcact attccggcaa accagcaggg
    29701 cgatcagtct gaacgtatcg cgatgctctg gttgagtgaa atctcccatc atttccgtgg
    29761 cgacagctac tgctacggtg gcggttacta ccgtcgtggt catgcgcaac atgcgttggt
    29821 gtttacgcca gaaaatcaaa agattactga aaccaatctc aaaactgtgg atgacagcag
    29881 tatcgactac accctgtcgc tggcaggcga gtttccggta agcagtgcag tggtgctctg
    29941 tttccgcacg cagatttttg tcacccgtag cgatgtggtg ctggtgtccg gtattcaccg
    30001 tggcgaaccg aaaatcgttg gtcgttatga cagtcttgga aactctctgg gggcgtaatg
    30061 gcgcgatttg tggtgttagt gattgatagc tttggcgtag gggcaatgaa agatgtcacg
    30121 ctggtgcgtc cgcaagatgc gggagcgaat acatgtggtc acatcctgag ccagttgccg
    30181 catttgcagc taccaacgct ggagaagctg gggctaatca acgcattggg ttatgcgcca
    30241 ggcgatatgc agccgtcaga ttccgcaacc tggggcgtgg cagagctgca acatgaaggt
    30301 ggcgatacct ttatggggca tcaggaaatt ttaggcacgc gcccgttacc gccgctgcgg
    30361 atgccttttt gcgatgtgat tgaccgtgtt gagcaggcat tagtatccgc cggttggcag
    30421 gtggagcgcc gtggcgatga actgcaattt ctgtgggtca atcaggcggt tgcgattggc
    30481 gataatctcg aggcggattt aggccaagtc tataacatta ccgccaatct ctctgtgatc
    30541 tcttttgacg acgcaatcaa aattggtcgt atcgtgcgtg agcaggtaca ggtcggtcgg
    30601 gtcattacat ttggtggcct gttaaccgac agtcaacgca ttctcgatgc cgcagaaagc
    30661 aaagaagggc gctttattgg tatcaatgcg ccgcgttctg gcgcttatga caacggcttc
    30721 caggtcgtgc atatgggcta cggtgtcgat aaaaaagtgc aggtgccgca aaaactgtat
    30781 gaggcgggcg tgccaaccgt gctggtgggt aaggtggcag atatcgtcag caatccttat
    30841 ggcgtgagct ggcaaaacct ggtggatagc cagcggatta tggatatcac cctcgacgaa
    30901 tttaacaccc atccgacggc gtttatttgc accaatatcc aggaaaccga cctcgctggt
    30961 catgcagaag acgtcgcacg ttatgccgaa cgtttgcagg tcgttgaccg taaccttgcc
    31021 cggcttgttg atgcgatgca gccagatgat tgcctggtcg tgatggcgga tcacggcaac
    31081 gatccgacca ttggtcacag ccaccatacc cgcgaagtgg tgccgctgct ggtttatcag
    31141 caaggcctgg ctgctacgca gctcggtgtg cgcaccacgc tttctgatgt gggagctacc
    31201 gtgtgtgaat ttttccgtgc gccaccgcca caaaatggtc gctcttttct ttcctccctc
    31261 cggtttgcag gagacaccct atgagttttg atccgacggg ttacaccctg gcccatgagc
    31321 atctgcatat tgatctctcc ggctttaaaa acaacgtgga ctgccgcctt gatcagtatg
    31381 cgttcatttg ccaggagatg aacgacctga tgacccgggg tgtacgtaat gtgattgaga
    31441 tgaccaaccg ttacatgggg cgcaatgcgc aatttatgct cggtgtaatg cgcgaaaccg
    31501 ggatcaacgt ggtggcctgt actggttatt accaggatgc gtttttcccg gaacatgtgg
    31561 tgacccgcag cgtgcaggaa ctggcgcagg agatggtcga tgaaattgaa cagggtatcg
    31621 atggcacgga gctgaaagcc gggctcatcg cggagatcgg ctccagcgaa ggaaagatta
    31681 cgccgctgga agagaaggta tttattgccg ctgcgctggc gcataaccag accggacgcc
    31741 cgatctccac gcatacgtcg ttcagcacca tggggctgga acaactggct ctgttgcaag
    31801 cccacggagt tgatctttcg cgcgtcaccg ttggtcactg cgatctgaaa gacaacctcg
    31861 acaacatttt gaagatgatc gatctcggcg cgtacgtgca gttcgacacc attggtaaga
    31921 acagttacta cctggacgaa aagcgcattg cgatgctcca cgctacgtga ccgtgggttg
    31981 ctgaaccgcg tcatgctgtc gatggatatt acgcgccgct cccatttaaa agccaatggt
    32041 ggttatggct atgactattt attgaccacc tttattccgc aattgcgcca gtcaggattc
    32101 agtcaggccg atgtggatgt gatgttacgt gaaactccct ctcaattttt ccaataagga
    32161 cagactcatg aaaaagattg gcgttgcagg cttacagcgt gagcagatta aaaaaaccat
    32221 tgaagcgacg gctcctggca gttttgaagt tttcattcac aacgacatgg aagcggcaat
    32281 gaaagtgaaa tccgggcaac tggattacta catcggtgcg tgtaataccg gtgcgggcgc
    32341 ggcattgtcg attgccatcg cggtgattgg ctataacaaa agttgcacca ttgccaaacc
    32401 aggcattaaa gcgaaagacg agcatatcgc caaaatgatc gctgaaggaa aagtggcgtt
    32461 tggcctttcc gttgagcacg tcgaacacgc gattccgatg ctgattaacc atctgaaata
    32521 aaaggcacga ctatggatct gtatattcag attatcgtgg tggcgtgcct gacgggtatg
    32581 acatcgcttc tggcgcatag ctcggcggct gtttttcatg acggcatccg cccgatcctg
    32641 ccgcaactga ttgaaggcta tatgaaccgt cgcgaggcgg ggagtatcgc ttttggtctg
    32701 agcattggtt ttgtggcctc ggtggggatc tcttttaccc tgaaaaccgg gctgctcaac
    32761 gcatggttac tctttcttcc taccgatatc ctcggcgtac tggcgataaa cagcctgatg
    32821 gcgtttggtc ttggcgctat ctggggcgtg ttgatcctta cttgcctgtt gccagtaaac
    32881 cagctgctga ccgcgctgcc ggtggatgta ttaggtagcc tcggggaatt aagctcgccg
    32941 gtagtttctg cttttgcact gttcccgctg gtggcgattt tctaccagtt tggctggaag
    33001 caaagtctgg tcgccgccgt ggttgttctg atgacccgtg tggtagtcgt gcgctatttc
    33061 ccacatctta accctgaatc catcgaaatc tttattggca tggtgatgct gctggggatc
    33121 gcgataactc acgacctgcg tcatcgtgat gaaaatgata ttgatgccag cgggctttcg
    33181 gtgtttgaag aacgcacgtc gcggattatc aaaaacttac cctatatcgc catcgtggga
    33241 gcattgattg ccgccgttgc cagcatgaag attttcgccg gcagtgaagt gtcgatcttc
    33301 actctggaga aagcgtactc cgcaggcgta acgccggaac aatcgcaaac gctgatcaac
    33361 caggcggcac tggcagaatt tatgcgcggg ctgggttttg taccgttgat tgccaccacc
    33421 gccttagcaa cgggtgtgta tgcagttgcg ggctttacct ttgtttatgc ggtgggctat
    33481 ctctcgccga atccgatggt tgcagcggta ttaggcgcag tggttatttc ggcggaagtc
    33541 ttgctgcttc gttctatcgg caaatggctg ggacgctacc cgtcggtgcg taatgcgtcg
    33601 gataacatcc gtaacgccat gaatatgctg atggaagtgg cgctgctggt cggttcgatt
    33661 ttcgcagcaa ttaagatggc gggttatacc ggattctcta tcgcggttgc catttacttc
    33721 ctcaacgaat ccctgggccg tccggtacag aaaatggcgg caccggtcgt ggcagtaatg
    33781 atcaccggta ttctgctgaa tgttctttac tggcttggcc tgttcgttcc ggcttaagga
    33841 aggcacctat gaagacgttt cctctgcaaa gcctgacgct tattgaggcg cagcaaaagc
    33901 agtttgcgct ggtggacacg atttgccgtc actttcccgg cgcggagttt ctaaccagcg
    33961 gtgatttggg cttaacgccg gggctgaatc aaccgcgtat tacccaacgg gtggagcagg
    34021 tgctggctga tgcatttcac gcacaggctg cggcgctggt gcagggcgcg gggactggcg
    34081 cgattcgcgc cgggctggca gctttgctca aaccggggca gcgtcttctg gtgcatgacg
    34141 cgcctgttta cccgacgaca cgggttatta ttgagcagat ggggctgacg cttattactg
    34201 ttgatttcaa tgacctgtcg gcactgaagc aggtcgtcga cgagcaacaa ccggatgcgg
    34261 cgctggtgca gcatacgcgc cagcagccgc aggacagcta cgtgctggca gatgtgctgg
    34321 caacgttgcg ccagcgttaa ccgatgacaa ctatgcggtg atgaaggtgg cgcgaatcgg
    34381 ctgtgaatgc ggcgcgaatg tctcgacatt ttcctgcttc aagctatttg ggccagaggg
    34441 tgttggtgca gtggtcggcg atgctgatgt tatcaaccgt attcgcgcca cgctttactc
    34501 cggcggtagc cagatccagg gcgcacaggc gctggaagta ttgcgttgtc tggtgtttgc
    34561 gccagtgatg cacgcggtgc aggcaggggt atctgaacgg ttgctggctt tgcttaacgg
    34621 tggtgaggtg ccggaagtga aaagcgcggt gattgctaat gcgcagtcga aggtgttgat
    34681 tgtcgagttt catcagccga ttgccgccag agtgctggaa gaggcgcaaa agcgcggtgc
    34741 cttgccttac ccggtgggtg cagagtcgaa atatgaaatc ccgccgctct tttatcgcct
    34801 ttccggaacg tttcgccagg cgaatccaca atcagaacat tgtgcgattc gcattaaccc
    34861 gaatcgcagc ggtgaagaga cggtgctgcg gattttgcgt gagagtattg ccagtattta
    34921 atgctggata gcaccgtcaa gctaaattcc gtactgaacg gtcccctcgc ccctttgggg
    34981 agagggttag ggtgagggga acgtacggga tgtaaaattc aacgcgccag catcgccgga
    35041 tgcgatgctg gcgcatctta tccggcctac ggttaatgtc ttttattatc aatagttaag
    35101 gtgatgcgat tggcgcggca gaagagttcg gagacgtgca ccggtttgtc attctgatca
    35161 aaggcgattt tgctgatgcg aaacaacggt tcgcccagtt cgcatttcag ccattttgcc
    35221 tgcgggcggg tggcggcaaa gatatcgatg gtctttttgt cgctgaccac tcgcgtgtca
    35281 aaacgctcct gaaataactg ataggtggag cttccttcga cgtaaatctc atcaaagtca
    35341 ggataacgcg acagcgggat ccatgaacta tcaataaaca gcggctcttt atcgagatac
    35401 atcacccggc agagatggaa cacttcgctg tttccgggga tgttcagctt tttgcaaaac
    35461 ggcgcggcgc tgacccgttc ctgttcgatc actttctctt tcgtcgcctt gccttgtgag
    35521 acgccaaaat cggtaaaacc actgacagta agcagggcgt tttcaacttt ctggctttgt
    35581 acaaaggtgc cttttccctg ccagcggatc agtacgccgt ccgccactaa gtcgctgatg
    35641 gctttgcgaa tggtaatgcg gctgacgtta tattgtgtac aaagctcgtt ttcggtaggg
    35701 atctgttgcc cggcctggta aaccccctgc gcgatatcat ccagcagtcg ctggcggacg
    35761 gtagcgtaga ggagttgatg agagtagcgg tccgtagctg acataatcga ccctgaaata
    35821 aagaatgaat tactcggatt atagggtcgt tttccggcaa gtaacagcac gttggcgtga
    35881 agatgctcac gccaacgtta tacctaccag gcaccgtggt actgaatggt tttcgccgcg
    35941 cacgccgttc cctgcgccat cgcctgcggt aatgtcatcc ccgcagacca gccgcaaagg
    36001 aatccggcaa tgaacgaatc tccggcaccc atggtgtcga taaccgtcac cggttcagga
    36061 gcctgacgcc agaactgcgc gccatcccag gcaatgctgc cgttttcacc cagcgtgaca
    36121 atcactgttc ctgcgccacg ggcaacaatc gctttcatct tcagacgcag cgtttcgtct
    36181 tcttgcggtg cggaggcaaa ggcaaaatcg agatgcggca ccagtgtctg ccagagcggg
    36241 ctgtcccact tgtcggagaa gtcgaaagcg gtaagtttgc ccgcagcgtg cagctgtggg
    36301 aatgcgtctt ccgcatgtcc ccagattgcc gcgtgcacaa tgtcatactg cgccagccag
    36361 gcgtaatcct cttcactcag ggcaaagtcg gccatcacgc cttcggtgta gtcgccaaaa
    36421 acgcgatcat tgtcgtgcag ttccacctga gtttgtgcgg taacgccgtg tttcgtatgg
    36481 acatggctga tatcgacgcc catgcgggcg agatcctgct tcagctttgt gccgtagtca
    36541 tcgtcaccca cccaggtaat gcatcccggc tgtatgccgt agcgagtgca gtacaccgcc
    36601 acattgaccg cattaccgcc agaaaacgct ttattcagtt gcgggtagat atcgacgcag
    36661 ttatcgccga ttgtcgccag ggttttcatc tctcatcctc cggcagcagc gcgcgaaagc
    36721 gttccagcgc ctggcgggca tagagtctgg gctcgttcat atacatcgtc accagctcca
    36781 ccgtacagta accctcatag ccccgctcaa taatatcgcg catcagttcc cgcagcggca
    36841 ttttgccttc tccaggaatg taatgcgtgt cgctggcccc gtcgctgtcg acaatatgca
    36901 gatgacgtaa tttatcgccc agtttgtcga aataactcat caccggttcc gcctggacat
    36961 acggcgcgca aatgtcgacc atgctgaaca ggcgcggcga aggcaccagc gccagcgcat
    37021 gaagcacatc attagcatta cacacgatgt tcgattcata cggcgttaac ggttcgagga
    37081 ttagatccat gccgatgttt tccgcgtact catacagttc gcttaggttc tctgccagcc
    37141 gtccccagat aacattaggt ggcgtgagat agcccgcgtg ggccgcggaa atcagcgtat
    37201 aacccgcgtt catctctttt gccatatcca tcgccagctt gatcatgtcg aggctttcgc
    37261 gacgcatatg ttcatcgccc agcatcatgt tatacggata gccattggtt tctggcgtat
    37321 agccgataat cggcatctga tacgtctgcg ccagcgcctt gatttgtttg atgccgcccg
    37381 cttttaagtc cggcgcgaac gcgtgcgggc gaccgcccca aatttcgatg ccgtcgtaac
    37441 ccagctcgct tgcatcacga aatgcgtgtt caataggcag ccgctggtgg ccgcaggtaa
    37501 acatacctgt tttcatcggg taactccttg cgtaaatccg gcccgttgcc gggccgggcg
    37561 agggattaat attccaccag accaccgtaa tagcggcgtt catccgggtt gtgatctttg
    37621 taaatagaca ggtagtagca gagccactcc attggcacga acatcaggaa cggtgccagc
    37681 cacgggtgca gcccttgcga aatttcggcg taatcgatga cgatcacgtt gtcagtacgc
    37741 tgtttaacaa agttaatggc gcgttcggtg gtgtggcgac tttcatcatt gccgagcagg
    37801 aacaggaacg gaacgcccgg ttcgacaatc tccagcgggc catggcggaa ctctccgctc
    37861 tcaatcacgc agccgtgcgt ccaggtaaat tccatcagcg ttacaatgcc ttctttgtaa
    37921 cccagcggac gcagcggacc cgcagcaacg gtataaatca tcggccactg gctggccagt
    37981 tcaccaagct ggcggccttt ttcttcccag gtgcgtacca gatgaccgag cgcattcggc
    38041 aactgcttga gatcgttttt gatcttgccg atttccgcgt tcggcgcgag gcgggtgatc
    38101 atctccagca ccacgctgta gcagagcagc aggtgaattt cccagataca gtcggcctga
    38161 taatcaatgc taaattccgc cgccgaggta atcgggctgt ccgcgcgttt ggtgaacgcc
    38221 gcagtgagtg cgccgcaggc ccggcccagc tccagcgctt tgattacctc ttccgtttta
    38281 ccgtagtcag aaacgccaat caccgcgcaa cgatcgtcga ggcgatacgg ggtgttatcg
    38341 cagaactccc agccggaaat ggcgtagacc tgaagatcgg aaaagcgatc cgccagatgt
    38401 ttcgccgctt gcgccgcgtt gagtggcgag ccgcaggcaa cgaaataaat acgatcaatg
    38461 tcgcgcttca ccatctcttc cacgatggcg tgcaccagcg gaacgtcatg gctgagaact
    38521 ttttccactt cctgaaccat attttcggtg accagaaagt ccacggtgct tttatcaata
    38581 tccaacattt tattttctcc agataacatt acgacaaagc gttgagctgg cggctacgct
    38641 tcgcccagaa ggcgtaagca ggcagaccag tagcaataac gatgacggcg cagataaggc
    38701 cgggaatcgg tgcccagaca aaggttgagg cgaccagaat gaggcttgac gcaatggcga
    38761 gggtggtcat cagcccgaaa gcaggagtac gccacagcgg tttgtaatcg tcgcgtttac
    38821 gacaccagat gatggagccg aaggtgaggg tatttttgaa acacatcacc agggtgaaat
    38881 aacccagcag gctggtgaga tcggaaacga agatgaagaa gagcccctgc gccccttgca
    38941 ggatgatgga gacatccggc gtgttgtatt tcggatgcac atggccgaag catttaaaga
    39001 acaggttgtc tttcgccatc gcgtattcca gccgcggctg gtacatcacg cagctggaaa
    39061 gcgaaccaag aatgacgatc atcgccgtga tggcaacaaa gatcccagcg gtgctgccga
    39121 gtgcggggat ccaggtcagg gcgtcggaaa tcggcgtttc agaattggcg agtttgtcga
    39181 agggcatcag gtcggaaatc accagcgcca gcagggtgta gagcaccaga accagcagac
    39241 aggaaccaat cagcgctcgt ggcatggttt ttccggggtt tttaatttcg ccggtcatat
    39301 aacagataga ggccatgccg gtatacgacc aactggtggc agagatcccc gccagcagcg
    39361 ccataaagct gcccgttgcg ccaatcgcag tggtggtagg ggcggcaaaa ttctccgctt
    39421 taaaccagaa gatcccaagg ccaatgacga tagtgaacgg gataattttg gcgatggtaa
    39481 ttagcgtctg aaacgctgcg ccgccttcaa cggagcgcag gtgtagcaac ataaaggcga
    39541 taattaatcc ggcggcgata aatttaccgg gcaacggatc gataggcgtt aaaaagccaa
    39601 gattgctgac aatcgccagc gccataatcg acaatgacgg cgcatcgttg gcccagaagc
    39661 tggcccagcc ggagaggaaa gccagcggtc ggcttccggc atttttcaga taaacataat
    39721 ctgcgccatt ttccggataa gcggtggata gttccgcata gacgcacatt tgcgggatca
    39781 caattaaccc gccaatgaca aacgtgagca ccgtaagcca cggcgtgccc gctgcttttg
    39841 ccacttcacc cacagataca aaaataccgg agccgacggt tgtcccgacg gcgattgcaa
    39901 gaacggccca aaatccgagc ttgcgttgga gttcctggct tcccatagcg ataccttttt
    39961 cttgtccaac acgttgtagg ggagagtttg cagtcattta aaaggtaaca tgacaatgca
    40021 tgatgaatat aataacatat gatgttatgt aatgcggagg aagatcacaa aatttcgcac
    40081 aggatcgcgc tgtggctaat gaatgtagtt atccaattga aattaaagtg aaaatatttt
    40141 tacgggtggg gagcaagaag gatatagaaa caaatacgcc ctcggaaaat ccagagggcg
    40201 tcgggcaatt aaaccggtgt tagccgattt ctgtcagaga cttactgtgc agtaggaccg
    40261 caaccgccaa tgattttaga aatagaaatt gccgggtgca gcaggtagtc gtaagagcag
    40321 ttcttatcac ggttttcaat atgaccagta catgcagtta acgtagccag tactgcacct
    40381 accagtgcaa ctttaataaa tttgttcatt
//
LOCUS       DAJVUY010000014        40386 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.014, whole genome shotgun sequence.
ACCESSION   DAJVUY010000014 DAJVUY010000000
VERSION     DAJVUY010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 40386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40386
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.014"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(350..556)
                     /locus_tag="OQQ72_000699"
     CDS             complement(350..556)
                     /locus_tag="OQQ72_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HCS2010534.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            869..958
                     /gene="kdpF"
                     /locus_tag="OQQ72_000700"
     CDS             869..958
                     /gene="kdpF"
                     /locus_tag="OQQ72_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HCS2010535.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            958..2631
                     /gene="kdpA"
                     /locus_tag="OQQ72_000701"
     CDS             958..2631
                     /gene="kdpA"
                     /locus_tag="OQQ72_000701"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HCS2010536.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2654..4702
                     /gene="kdpB"
                     /locus_tag="OQQ72_000702"
     CDS             2654..4702
                     /gene="kdpB"
                     /locus_tag="OQQ72_000702"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HCS2010537.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     EGRLVAMTGDGTNDAPALAQADIAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSITNDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4711..5254
                     /gene="kdpC"
                     /locus_tag="OQQ72_000703"
                     /pseudo
     CDS             4711..5254
                     /gene="kdpC"
                     /locus_tag="OQQ72_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5247..7931
                     /gene="kdpD"
                     /locus_tag="OQQ72_000704"
     CDS             5247..7931
                     /gene="kdpD"
                     /locus_tag="OQQ72_000704"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdpD"
                     /protein_id="HCS2010538.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTDAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7928..8605
                     /gene="kdpE"
                     /locus_tag="OQQ72_000705"
     CDS             7928..8605
                     /gene="kdpE"
                     /locus_tag="OQQ72_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HCS2010539.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETG
                     IGYRFML"
     gene            complement(8821..9078)
                     /locus_tag="OQQ72_000706"
     CDS             complement(8821..9078)
                     /locus_tag="OQQ72_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010540.1"
                     /translation="MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVG
                     RLTGIEEVKVEAIAMSKLHNMSCPPYMGHSAAVIFHLIYLS"
     gene            9201..11399
                     /gene="speF"
                     /locus_tag="OQQ72_000707"
     CDS             9201..11399
                     /gene="speF"
                     /locus_tag="OQQ72_000707"
                     /EC_number="4.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase SpeF"
                     /protein_id="HCS2010541.1"
                     /translation="MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVT
                     CGKLDEIDATGYGIPVFIATENQERVPAEYLPCISGVFENCESRREFYGRQLETAASH
                     YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRSDLC
                     NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL
                     FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQR
                     TKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS
                     PLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMH
                     ASTSPFYPLFAALDINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELV
                     DGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGFDARNG
                     EYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLL
                     ESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQPQKEMFRKEHFPRV
                     SMNPQEANYAYSRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFS
                     ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL"
     gene            11396..12734
                     /gene="potE"
                     /locus_tag="OQQ72_000708"
                     /pseudo
     CDS             11396..12734
                     /gene="potE"
                     /locus_tag="OQQ72_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415219.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine-ornithine antiporter"
     gene            12810..12959
                     /locus_tag="OQQ72_000709"
                     /pseudo
     CDS             12810..12959
                     /locus_tag="OQQ72_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415222.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
     gene            13083..13733
                     /locus_tag="OQQ72_000710"
     CDS             13083..13733
                     /locus_tag="OQQ72_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001208812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 domain-containing protein"
                     /protein_id="HCS2010542.1"
                     /translation="MREMNQLVNTEDSAWPIIQNWLKDATNHTELLPVNKNLAETALY
                     QLQVTTKSPMGALVYGSGGLLIDNGWLRIAGSGHPRLPRDPVSWTQRPEFAGVRALPI
                     ADDVAGGIFALNGGDLGEDTGCVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYEN
                     VRWQQWREDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQYQMKETFTQ"
     gene            complement(13774..14268)
                     /locus_tag="OQQ72_000711"
     CDS             complement(13774..14268)
                     /locus_tag="OQQ72_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010543.1"
                     /translation="MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTR
                     RLTGSIAVNIAPSRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPG
                     WQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKA
                     INTH"
     gene            complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="OQQ72_000712"
     CDS             complement(14483..16123)
                     /gene="pgm"
                     /locus_tag="OQQ72_000712"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HCS2010544.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="OQQ72_000713"
     CDS             complement(16149..16694)
                     /gene="seqA"
                     /locus_tag="OQQ72_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HCS2010545.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIAEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            16879..17643
                     /gene="ybfF"
                     /locus_tag="OQQ72_000714"
     CDS             16879..17643
                     /gene="ybfF"
                     /locus_tag="OQQ72_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS2010546.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            17783..18076
                     /gene="ybfE"
                     /locus_tag="OQQ72_000715"
     CDS             17783..18076
                     /gene="ybfE"
                     /locus_tag="OQQ72_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HCS2010547.1"
                     /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR
                     DKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV"
     gene            18216..18746
                     /gene="fldA"
                     /locus_tag="OQQ72_000716"
     CDS             18216..18746
                     /gene="fldA"
                     /locus_tag="OQQ72_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HCS2010548.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            18956..19042
                     /gene="uof"
                     /locus_tag="OQQ72_000717"
     CDS             18956..19042
                     /gene="uof"
                     /locus_tag="OQQ72_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HCS2010549.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            19035..19481
                     /gene="fur"
                     /locus_tag="OQQ72_000718"
     CDS             19035..19481
                     /gene="fur"
                     /locus_tag="OQQ72_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HCS2010550.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(19566..19892)
                     /locus_tag="OQQ72_000719"
     CDS             complement(19566..19892)
                     /locus_tag="OQQ72_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010551.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="OQQ72_000720"
     CDS             complement(19942..21348)
                     /gene="chiP"
                     /locus_tag="OQQ72_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HCS2010552.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPAYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="OQQ72_000721"
     CDS             complement(21795..23459)
                     /gene="glnS"
                     /locus_tag="OQQ72_000721"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCS2010553.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTRQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSSEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="OQQ72_000722"
     CDS             complement(23662..25608)
                     /gene="nagE"
                     /locus_tag="OQQ72_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HCS2010554.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            25941..26741
                     /gene="nagB"
                     /locus_tag="OQQ72_000723"
     CDS             25941..26741
                     /gene="nagB"
                     /locus_tag="OQQ72_000723"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HCS2010555.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            26801..27949
                     /gene="nagA"
                     /locus_tag="OQQ72_000724"
     CDS             26801..27949
                     /gene="nagA"
                     /locus_tag="OQQ72_000724"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HCS2010556.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            27958..29178
                     /gene="nagC"
                     /locus_tag="OQQ72_000725"
                     /gene_synonym="nagR"
     CDS             27958..29178
                     /gene="nagC"
                     /locus_tag="OQQ72_000725"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HCS2010557.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            29226..29978
                     /gene="nagD"
                     /locus_tag="OQQ72_000726"
     CDS             29226..29978
                     /gene="nagD"
                     /locus_tag="OQQ72_000726"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HCS2010558.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETSSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI"
     gene            30375..32039
                     /gene="asnB"
                     /locus_tag="OQQ72_000727"
     CDS             30375..32039
                     /gene="asnB"
                     /locus_tag="OQQ72_000727"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HCS2010559.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            32420..32496
                     /locus_tag="OQQ72_000728"
     tRNA            32420..32496
                     /locus_tag="OQQ72_000728"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32454..32456,aa:Met,seq:cat)
     gene            32505..32589
                     /locus_tag="OQQ72_000729"
     tRNA            32505..32589
                     /locus_tag="OQQ72_000729"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32539..32541,aa:Leu,seq:tag)
     gene            32613..32687
                     /locus_tag="OQQ72_000730"
     tRNA            32613..32687
                     /locus_tag="OQQ72_000730"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32645..32647,aa:Gln,seq:ttg)
     gene            32722..32796
                     /locus_tag="OQQ72_000731"
     tRNA            32722..32796
                     /locus_tag="OQQ72_000731"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32754..32756,aa:Gln,seq:ttg)
     gene            32812..32888
                     /locus_tag="OQQ72_000732"
     tRNA            32812..32888
                     /locus_tag="OQQ72_000732"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32846..32848,aa:Met,seq:cat)
     gene            32937..33011
                     /locus_tag="OQQ72_000733"
     tRNA            32937..33011
                     /locus_tag="OQQ72_000733"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32969..32971,aa:Gln,seq:ctg)
     gene            33049..33123
                     /locus_tag="OQQ72_000734"
     tRNA            33049..33123
                     /locus_tag="OQQ72_000734"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:33081..33083,aa:Gln,seq:ctg)
     gene            complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="OQQ72_000735"
     CDS             complement(33277..34452)
                     /gene="ubiF"
                     /locus_tag="OQQ72_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HCS2010560.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            34598..36022
                     /gene="miaB"
                     /locus_tag="OQQ72_000736"
     CDS             34598..36022
                     /gene="miaB"
                     /locus_tag="OQQ72_000736"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCS2010561.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            36175..37215
                     /locus_tag="OQQ72_000737"
     CDS             36175..37215
                     /locus_tag="OQQ72_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HCS2010562.1"
                     /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD
                     NHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTIKEARVLEQSAESV
                     PEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL
                     ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER
                     NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL
                     PRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL
                     AAERKREEQEQK"
     gene            37212..37679
                     /gene="ybeY"
                     /locus_tag="OQQ72_000738"
     CDS             37212..37679
                     /gene="ybeY"
                     /locus_tag="OQQ72_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCS2010563.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE"
     gene            37769..38647
                     /gene="corC"
                     /locus_tag="OQQ72_000739"
     CDS             37769..38647
                     /gene="corC"
                     /locus_tag="OQQ72_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HCS2010564.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            38672..40210
                     /gene="lnt"
                     /locus_tag="OQQ72_000740"
     CDS             38672..40210
                     /gene="lnt"
                     /locus_tag="OQQ72_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HCS2010565.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
BASE COUNT         9611 a        10336 c        10514 g         9925 t
ORIGIN      
        1 gaacaggcca cgccggtggg ggcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gctgccggtt ttccgctcat ttctcatcct
      121 tgttttatcg ggttatttgt ccgctgacag gcaaaaccct acagatttat aagaaagcct
      181 taagtgagat atccatcaga tagaaacaat taggaaaata tttatatatt tttcctgaat
      241 atatttcagc tgggtaatac catatctaaa tatttacctg aacatcttcc taataaaaaa
      301 accgccagca tctccactag cggttttcaa tgtattcaaa actcggcaat cagtaaaaat
      361 caccggttgc cttttcggcc tgttccatcc aaaccggttt atcgctggtt ttcgaccaga
      421 cgcggtgcag gtagctgtaa aagcgggcgc ggtctttcca gaaaagcatg aaaggcagcg
      481 ccagaacgcc cgctgcaacc gcatatgtac ggcgtaaaaa gataagccat gcaggatatt
      541 ctctgtagag ttccatactt ttctccccct tttgtatcta cccggtgaat agcaccggaa
      601 aaatgaattt gtttatctga tgaaaatagt accgcctttt gtgtaatttt actactcatc
      661 cgaccactta tttttgctta ttgatggttt atttacattc actctgtaat taagttgcat
      721 aaaagttaaa ttaatgctaa acattagtta aaccatggct tttgccattt ttatactttt
      781 tttacacccc gcccgcagat ttttgcgaaa tctttgcagc cagaattcta ctcttccggt
      841 atcactttta ggccactgga ggtgcactgt gagtgcaggc gtgatagccg gcgtgttgct
      901 ggtgttttta ttactgggtt atttggttta tgccctgatc aatgcggagg cgttctgatg
      961 gctgcgcaag ggttcttact gattgccacg tttttactgg tattaatggt gctggcgcgt
     1021 cctttaggca gcgggctggc gcggctgatt aatgacattc ctcttccagg tacagcgggc
     1081 gttgaacgta tactctttcg tttacctggc gtctctgacc atgagatgaa ctggaagcaa
     1141 tatctttgtg ccattctcgg cctgaacatg ctggggctgg cggtgctgtt ttttatgttg
     1201 ctcggtcagc actatctgcc gcttaatcca cagcagttgc cggggctgtc gtgggatctg
     1261 gcgctgaata ccgccgtcag ctttgtcacg aataccaact ggcaatctta tagcggtgaa
     1321 accacgttga gctatttcag ccagatggca ggcttaacgg tacaaaactt tctttctgcc
     1381 gccagcggga ttgcggtgat ttttgccttc atccgtgcgt ttactcgcca gagcatgagc
     1441 acactcggga atgcctgggt cgatctgcta cgcatcacgt tatgggtgct agtccctgtg
     1501 gcgttgttga tcgcactgtt ttttattcaa caaggtgcgc tgcaaaactt tctgccctat
     1561 caggcagtga ataccgttga aggagcgcaa cagctgttac ccatgggacc agtagcttct
     1621 caggaagcga tcaagatgct cggtactaac ggcggtggct tctttaatgc caactcgtcg
     1681 catccgtttg aaaacccaac cgcactgacc aacttcgtgc agatgctggc gatcttcttg
     1741 atcccaacag ctctgtgctt tgcctttggt gaagtgacgg gcgatcgccg ccaggggcgc
     1801 atgttgctgt gggcgatgtc agtgattttt gtcatctgcg taggcgtggt tatgtgggca
     1861 gaagttcagg gtaatcctca tctgctggcg ctcggcgcag acagcagcat caatatggaa
     1921 ggtaaagaga gccgtttcgg cgtgctggtc agtagcctgt ttgcggtcgt gactacggcg
     1981 gcgtcctgtg gcgcggtgat tgcgatgcat gattcgttta ccgctctcgg cggcatggtg
     2041 ccgatgtggc taatgcaaat tggtgaagtg gtgttcggcg gtgtcggttc tggtctttac
     2101 ggcatgatgc tgtttgtcct gctggcggtg tttattgccg ggctgatgat tggtcgtaca
     2161 ccggaatatc tgggtaaaaa aatcgacgta cgcgagatga aactgactgc actggcgatt
     2221 ctggttactc caacactggt actgatgggc gcggcgttgg cgatgatgac cgacgccgga
     2281 cgtagcgcca tgcttaaccc tggcccgcat ggttttagcg aagtgctgta cgccgtgtcg
     2341 tccgccgcta acaacaacgg cagcgccttt gccggattaa gcgccaactc tccgttctgg
     2401 aactgtttac tggcgttctg catgtttgtc ggtcgcttcg gggtgattat cccggtgatg
     2461 gcaattgccg gttcgctggt gagtaaaaag agccaacccg ccagctccgg cacgctgcca
     2521 acgcacggcc cgctgtttgt tggcctgtta atcggcaccg tgttgctggt tggcgcactg
     2581 acctttatcc ctgccctggc gcttggtccg gtggcggaat atctctcctg atgatattga
     2641 gtgagcactg aatatgagtc gtaaacaact ggcgctattc gaaccaacac ttgtcgttca
     2701 ggcgctgaaa gaagcggtga aaaaattaaa cccgcaggcg caatggcgca atccggtgat
     2761 gtttatcgtc tggatcggca gtctgctgac cacctgtatt agcatcgcga tggcaagcgg
     2821 tgcgatgcct ggcaatgcgc tgtttagcgc ggcaattagc ggctggctgt gggtcaccgt
     2881 actgttcgct aatttcgccg aggcgctggc agaaggccgc agtaaagcgc aggccaacag
     2941 tcttaaaggg gtgaaaaaaa ctgcctttgc ccgcaagctg cgtgagccga aatatggcgc
     3001 tgcggcggac aaagttcctg ccgatcaact gcgtaaaggt gacatcgtgc tggtagaagc
     3061 tggcgatatt atcccctgcg atggtgaagt cattgaaggc ggcgcatcgg tcgatgaaag
     3121 cgccatcacc ggggaatcgg caccggtgat ccgtgaatcc ggcggcgatt ttgcctccgt
     3181 caccggcggc acgcgtattc tttctgactg gctggtgatt gagtgtagcg ttaaccccgg
     3241 tgagacattt ctggatcgga tgatcgcgat ggtggaaggc gcacagcgac gcaaaacacc
     3301 gaacgagatt gccctgacta tcctgctgat tgctctgacc atcgtctttt tactggcaac
     3361 cgccacgctg tggccgtttt ccgcgtgggg cggtaatgcc gtgagtgtaa cggtactggt
     3421 ggcgctgctg gtctgtctga tcccaaccac tattggcggc ctgttgtcag cgatcggcgt
     3481 cgccgggatg agtcggatgc tgggcgcgaa tgtgattgcc accagcggac gtgcagttga
     3541 agcggcaggt gacgttgacg ttctgctact ggataaaacc ggcaccatca cactcggtaa
     3601 ccgtcaggcg tcggagttta tccctgcgca gggcgtggat gaaaaaacgc tggctgacgc
     3661 cgcacaactg gcttcgctgg ctgatgaaac gccggaaggc cgcagtattg tgatcctcgc
     3721 caagcaacgt tttaacctgc gcgagcgcga tgtgcagtcg ctccatgcca cctttgtacc
     3781 gtttactgcg caaagccgga tgagcgggat caacatcgac aaccgcatga tccgtaaagg
     3841 ttctgtcgat gccattcgcc gccatgttga ggctaacggc ggtcacttcc ctgccgatgt
     3901 tgatcaaaaa gtcgatcagg ttgcgcgtca gggggccacg ccgctggtgg tggtggaagg
     3961 ttcccgtgtg ctgggcgtta ttgcgctgaa agatatcgtc aaaggcggta ttaaagagcg
     4021 cttcgcccag ctgcgcaaaa tgggcattaa aacggtgatg attaccggcg ataaccgtct
     4081 gactgccgcc gccattgctg cggaagcggg cgtcgatgat tttctcgccg aagcgacacc
     4141 ggaggccaag ctggcattga ttcgtcagta tcaggcggaa ggccgtttgg tggcgatgac
     4201 cggcgacggc accaacgatg ctccggcgct ggcgcaagca gatatcgcgg tggcgatgaa
     4261 ctccggcacc caggcggcga aagaggcggg caatatggtc gatctcgact ctaacccgac
     4321 caagttgatc gaggtggtgc atattggcaa acagatgctg atgacccgtg gctcgctgac
     4381 caccttcagc attaccaacg atgtggcgaa atacttcgcc attattccgg cggcgttcgc
     4441 ggcaacgtat ccgcagttaa atgcgctgaa catcatgcgc ctgcattcgc ccgactccgc
     4501 cattctcagt gcagtcattt tcaacgcctt gattatcgtc tttttgattc ctctggcgtt
     4561 aaaaggcgtg agttataaac cgcttaccgc ttctgccatg ttgcgccgta acttatggat
     4621 ttacggtctg ggtgggctgc tggtgccgtt tattggtatc aaagtcattg atttactgct
     4681 gaccgtttgc ggtctggtgt gaggtttacc atgcgtggct tacgtccggc attatcgaca
     4741 tttatctttc tgttattgat tactggcggc gtttacccgc tgctgaccac cgtgctgggg
     4801 caatggtggt ttccctggca ggccaacggt tcgttgattc gtgaaggtga tacggtgcgg
     4861 ggttcggcat taatcgggca gaattttacc ggcaacggca gaaatgccct ataatccaca
     4921 ggcttctggc gggagcaatc tggcggtcag taaccctgag ctggataaac aaatagccgc
     4981 acgcgttgct gcattacggg ccgctaaccc ggatgccagt acgaacgttc cggttgaact
     5041 ggtgacggca tcggcaagcg ggctggacaa taatatcacc ccgcaagcgg cggcctggca
     5101 gatcccacgc atcgcgaaag cgcgtaatct cagcgttgaa cagctcacgc agctgatcgc
     5161 aaaatacagc caacaaccgc tggtgaaata tatcggccag ccggtcgtca acattgtcga
     5221 actcaatctg gcgctggata agcttgatga ataacgaacc cttacgtccc gaccccgatc
     5281 gtctgctgga acaaactgcc gcgccgcatc gggggaagct gaaagttttc ttcggtgcct
     5341 gtgcaggcgt cgggaagacc tgggcgatgc tggcagaagc ccagcgactg cgggcgcaag
     5401 ggctggatat tgtggttggc gtggtagaaa cccacgggcg aaaagatacc gacgcaatgc
     5461 tggaagggct ggctgttctg ccgccaaaac gcctggcgta ccgtgggcgg cacatctgcg
     5521 agtttgacct cgatgccgcc ctcgcccgcc gtccggcgct gatcttaatg gacgaactgg
     5581 cgcacagtaa tgcgctaggt tctcgtcacc ctaaacgctg gcaggacatc gaagagctgc
     5641 tggaagcagg cattgatgtt ttcactaccg tcaacgttca gcatctggaa agtctgaatg
     5701 atgtggtcag cggcgtcacc ggaattcagg tacgggaaac cgtgcccgat ccttttttcg
     5761 atgccgccga cgacgtggtt ctggtggact tgcccccgga cgatctgcgc cagcggctga
     5821 aagaaggcaa agtctatatt gccgggcagg cggagcgcgc cattgaacat tttttccgca
     5881 aaggcaatct gatcgccctg cgcgaactgg cactgcgccg tactgccgat cgcgttgatg
     5941 agcaaatgcg cgcctggcgg gggcatcctg gcgaagagaa agtctggcac acgcgcgacg
     6001 cgatcctttt atgcatcggc cataacaccg gtagtgagaa gctggtccgc gcggcggcgc
     6061 ggctggcgtc acggctgggt agcgtctggc acgcggtgta tgttgaaacc cctgccctgc
     6121 accgcttacc ggaaaaaaaa cgtcgggcaa ttctcagcgc cttacgtctg gcgcaggagc
     6181 tgggcgcgga gacggcaaca ctttctgatc cagcggaaga aaaagcagta gtgcgttatg
     6241 cccgtgaaca taatctcggc aagattattc tcggtcgccc ggcctcgcgc cgctggtggc
     6301 gtcgggaaac gtttgctgac cgactggcgc gcatcgcccc cgatctcgat caggtgctgg
     6361 tcgcgcttga tgaaccaccc gcccgcacga ttaacaacgc gccggatagc cgctctttta
     6421 aagacaagtg gcgggtacag attcagggat gcgtggttgc cgccgcgtta tgcgccgtta
     6481 tcactttaat tgccatgcag tggctgatgg cgtttgatgc cgccaacctg gtgatgctgt
     6541 atctgcttgg cgtggtggtg gtggcgctat tttatggacg ctggccttcg gtggttgcta
     6601 ccgtcattaa tgtggtgagt ttcgatctct tttttatcgc cccacgcggc acgctcgccg
     6661 tctctgatgt gcaatatctg ctgaccttcg cagtgatgtt aaccgtcggg ctggtgatcg
     6721 ggaaccttac tgctggcgtg cgttatcagg cgcgggtagc ccgttaccgc gagcaacgca
     6781 cacggcactt atatgaaatg tcgaaagctc tggcggtggg ccgcagtccg caggacatcg
     6841 ccgccaccat cgaacaattt attgcctcca cgtttcatgc ccgcagtcag gtgttgttgc
     6901 ccgatgacaa cggtaaattg cagccgttaa cacatccgca aggaatgacg ccatgggacg
     6961 ataccatcgc gcagtggagt tttgataaag gcctgcctgc gggcgcgggc accgacacgt
     7021 tacccggtgt accgtaccag attttgccgc taaaaagcgg cgagaaaacc tacgggctgg
     7081 tggtggtgga gccggggaat ctgcgccagt tgatgatccc ggaacagcag cgcctgctgg
     7141 agacgtttac gctgttagtc gccaatgccc ttgagcggct gacgctaacc gccagcgaag
     7201 aacaggcgcg gatggcaagc gaacgtgaac agatccgcaa cgccctactg gcagcgcttt
     7261 cgcatgattt acgcacgccg ctcacggtgc tgttcggtca ggcagaaatc ttaacgctcg
     7321 atctggcaag cgaaggatcg ccccacgccc gccaggccag cgagattcgt cagcatgtgc
     7381 tgaacactac ccgactggtg aataatctac tggatatggc gcgaattcag tccggcggct
     7441 ttaatttgaa gaaagagtgg ttaacgctgg aagaagtggt cggtagcgcg ctgcaaatgc
     7501 tggaaccggg tttatcgtcg cccatcaatc tttctctgcc agaaccgctg accttaatcc
     7561 acgttgacgg gccactcttt gaacgggtgc tgattaatct gctggagaac gcggtgaaat
     7621 atgcgggtgc gcaggccgaa attggtatcg atgcccacgt tgagggcgaa aatctacaac
     7681 tggatgtctg ggataacggc cccggtcttc cgccaggcca ggagcagacg atatttgata
     7741 agtttgctcg cgggaataaa gagtcggcag taccgggggt agggcttgga ctggcaattt
     7801 gtcgggcgat agtggatgta cacgggggca ctattaccgc gttcaaccga ccggaaggtg
     7861 gtgcctgttt tcgtgttaca cttccccagc aaactgcccc tgaacttgaa gaatttcatg
     7921 aggatatgtg acaaacgttc tgattgttga agatgaacag gctattcgtc gctttctgcg
     7981 cacggcgctg gagggcgacg ggatgcgcgt ctatgaggcc gaaacgctgc aacgcggctt
     8041 gctggaagcg gctacccgta agccagattt gattattctc gatctcggcc tgcccgatgg
     8101 tgatgggatt gagtttatcc gcgacctgcg ccagtggagc gcggtgccgg tgattgtgct
     8161 ttccgcacgc agcgaagaga gcgacaaaat cgccgcgctg gatgccggag cggatgatta
     8221 tctgagtaag ccgtttggca ttggcgaatt gcaggcccgt ctgcgcgtcg ctttacgccg
     8281 ccactccgct accgccgcgc ccgatccgct ggtgaaattt tccgatgtta ccgtcgattt
     8341 agccgcccgc gtgattcacc ggggtgagga agaggtgcat ctcacaccaa ttgagttcca
     8401 cctgctggcg gtgctgctca acaatgccgg aaaagtactc acccagcgcc agctccttaa
     8461 ccaggtgtgg gggccaaacg cggtcgaaca cagtcactat ttgcgtattt atatgggaca
     8521 tctgcgacaa aaactggaac aggatcccgc ccgcccacgc catttcatta ctgaaaccgg
     8581 tattggctat cggtttatgc tttgaatatt aattttaata cagcctgcct tttattaatt
     8641 aaagccgtaa taataaatac ggctttttat cttaaacaac acacaaaaat aacaattcaa
     8701 tattttatat tactgagtaa aaagctcatc attaaataaa ttaagattga tcatttttta
     8761 ttgatcacct tcacagttca accgtatttc ctggatagaa tatcttcacc ttcattcaca
     8821 tcaggaaagg taaattaaat ggaaaataac agccgcacta tgccccatat aaggcggaca
     8881 actcatatta tgaagtttgc tcatcgcaat agcttcgact ttcacttctt caatgcccgt
     8941 tagtctaccg actaagggca cttcagcgta caggtcttcc tgactctctg tattacaggc
     9001 atatgcctgt attccgcagt gctcattctc tgttaaccct tgtattatca gccaccggac
     9061 tggtaagggt ttctgcattc tgaaaaaagc aatctacctg atttatttat cagcggggta
     9121 actttgcttt tttccggcac gatcgatttc tcattcgaga aattgaggac ctgctattac
     9181 ctaaaataaa gagatgaaaa atgtcaaaat taaaaattgc ggttagtgat tcttgcccgg
     9241 actgttttac cacgcagcga gaatgtatct acattaatga aagtcgtaat atcgatgtgg
     9301 cggcaatcgt tttatcgctc aacgatgtta catgcggaaa actcgatgaa atcgatgcca
     9361 cgggttatgg catcccggta tttattgcta ctgaaaatca agaacgtgta cccgcagagt
     9421 atttgccctg tatttcgggt gtctttgaga attgcgaatc gcgacgagaa ttttatggtc
     9481 gtcagttaga aaccgctgcc agccattatg aaactcaact gcgcccacct ttcttccgcg
     9541 cactggtcga ttatgtcaat caaggtaaca gcgcgtttga ttgccctggt catcagggcg
     9601 gcgaattttt ccgtcgccat ccggcgggga atcagtttgt ggaatacttt ggtgaggcgc
     9661 tgttccgttc cgacttgtgc aacgcagacg tagcaatggg tgatctgctg attcacgaag
     9721 gcgcgccatg cattgcacag caacatgcgg caaaagtgtt caatgccgat aaaacatact
     9781 tcgttctaaa tggcacttca tcttctaaca aagtggtttt aaacgccctg ctgacaccgg
     9841 gtgatctggt gctgtttgac cgcaataacc acaaatctaa ccaccacgga gcgttgctac
     9901 aggctggtgc aacaccggtt tatctggaaa ccgcacgtaa cccgtatggc tttatcggtg
     9961 gcattgatgc gcactgtttt gaagaaagtt acctgcgtga gctgatcgcg gaagtcgcac
    10021 cgcagcggac aaaagaggct cgtcctttcc gcctcgccgt tattcagcta ggcacctacg
    10081 acggtacgat ttataacgcc cgccaggtgg tggataaaat tggtcatctg tgtgactaca
    10141 ttctgtttga ctccgcatgg gtcggctatg agcaatttat cccgatgatg gctgactgtt
    10201 caccgctgtt gctggatctt aatgagaacg atccgggcat tctggttacg caatctgtgc
    10261 ataaacagca ggctggtttt tctcaaactt cacaaatcca taaaaaagac agccacatca
    10321 aagggcaaca gcgttatgta ccgcacaaac gcatgaacaa cgcctttatg atgcatgcct
    10381 ccaccagccc gttctatccg ctgtttgccg cactggatat caacgccaaa atgcatgaag
    10441 gtgtcagcgg tcgtaatatg tggatggatt gtgtggtaaa tggcattaat gcccgcaagc
    10501 tgatcctcga taactgtcag catattcgtc cgttcgtacc tgaactagtg gatggtaaac
    10561 cctggcagtc gtatgaaaca gcgcaaattg cggttgatct gcgcttcttc cagtttgtac
    10621 caggggaaca ctggcactct tttgaaggct atgcagagaa tcaatacttt gtcgatccat
    10681 gcaaactgtt gctgacaacc ccaggttttg atgcacgtaa cggcgaatat gaagcgttcg
    10741 gtgtacccgc gacgattctt gctaacttcc tgcgcgaaaa tggcgtagtg ccggaaaaat
    10801 gcgatcttaa ctccatcctc ttcctgctga ctccggcaga agatatggcc aaacttcagc
    10861 aacttgttgc cctgctggta cgcttcgaaa aactgcttga gtccgacgcg ccattagcag
    10921 aagtgctgcc ttccatctac aaacagcatg aagagcgcta cgccggttat acccttcgtc
    10981 agttatgcca ggaaatgcat gatttgtatg cccgtcacaa cgtgaaacaa ccgcaaaaag
    11041 agatgttccg taaggaacac ttcccacgcg taagcatgaa tccacaagaa gccaactacg
    11101 cctattcacg cggtgaagtg gagctggttc gtctgccgga tgccgaaggc cgtatcgctg
    11161 ccgaaggtgc gcttccttat cctccgggtg tgctgtgtgt tgttccgggt gaaatctggg
    11221 gtggtgctgt tttgcgttac ttcagcgctc tggaagaagg gatcaacctg ctgccaggtt
    11281 ttgcaccgga gctgcagggt gtctatatcg aagaacatga tggtcgtaag caagtttggt
    11341 gctatgtcat caagcctcgt gatgcgcaaa gcaccctgtt gaaaggggaa aaattatgag
    11401 tcaggctaaa tcgaacaaaa tgggcgtcgt tcagttaacc atactgacga tggtcaacat
    11461 gatgggctcc ggtatcatca tgctgccgac aaagcttgcc gaagttggga caatctcaat
    11521 tatctcctgg ctggtgacag ccgtaggctc aatggcactg gcatgggcat tcgcaaaatg
    11581 cggtatgttc agccgtaaat caggcggtat gggcggttat gcggagtatg ctttcggtaa
    11641 gtccggcaat tttatggcga actacaccta cggtgtctcg ctgctgattg ctaacgtcgc
    11701 gattgctatt tcggcggttg gttacggcac cgaactgctc ggcgcgagtt tgtcgccagt
    11761 gcagattggt cttgcgacca tcggagtgct gtggatttgt accgtggcta actttggtgg
    11821 tgcgcgcatt accgggcaaa tcagtagcat tactgtgtgg ggagtcatta ttccggtcgt
    11881 cggtctgtgc attattggct ggttctggtt tagtccgacg ctgtacgcta actcatggaa
    11941 cccgcaccat gtgccgttct ttagcgctgt aggttcttcc atcgccatga cgttgtgggc
    12001 tttcctcggt ctggagtcag cctgtgccaa cgccgaagta gtggaaaacc cggaacgtaa
    12061 cgtgccgatt gcagttcttg gcggtacttt aggtgcggcg gtgatttata tcgtctccac
    12121 caacgtgatt gccgggattg tgcctaatat ggagctggca aattcaacgg caccatttgg
    12181 cctggctttc gcacagatgt tcacaccaga agtgggtaaa gtcattatgg cgctgatggt
    12241 gatgtcctgc tgcggttcac tgcttggctg gcggttcact gcttggctgg cagttcacca
    12301 ttgcccaggt gtttaaatct tcatctgatg aaggctactt ccctaaaatt ttctcccgtg
    12361 taaccaaagt ggatgcaccg gtgcagggaa tgttgaccat tgtgattatt cagagtggat
    12421 tggcactgat gaccattagc ccgtcactga acagccagtt caacgtgctg gttaacctgg
    12481 ccgtggtgac caatatcatt ccgtatattc tgtcaatggc ggcattagtc attattcaga
    12541 aggtcgctaa tgtgcccccc tcaaaagcga aagtagcaaa ctttgttgcc tttgttggtg
    12601 cgatgtacag tttctatgcg ctgtactcat ccggggaaga agccatgctg tacggttcta
    12661 tcgtgacctt ccttggttgg acactgtatg gtctggtatc accatgcttt gaactgaaaa
    12721 ataaacacgg ttaataaaac aaagtaaaaa agggcgattg aatgatcgcc ctttctgttt
    12781 gttggcaaat agttcgttat ttatgccgca tccggcagat gtagggtcta aacgcgatcg
    12841 aacacagcaa ctatttgcgt aattatatgg ggcatctgcg acaaaaactg gaacaggatc
    12901 cggcccggcc tcgccatttt attactgaaa ccggtattgg gtatcggttt atgctttgaa
    12961 aaaagtggca atgtatggat aaagtcattt tttattcaaa tataaggaac ttaatattta
    13021 aaaaatgttc catacaattc ctcatcataa atgacaccgt agcacacaag gagcaagtag
    13081 cgatgcgtga aatgaatcag ttagtaaata ctgaagattc agcctggcca ataatccaga
    13141 actggttaaa agacgccaca aaccataccg aactcttacc ggttaataaa aatttagccg
    13201 aaaccgcact ttatcaatta caggtgacaa caaaatcacc gatgggtgcg cttgtctatg
    13261 gctccggagg tctgctgatt gataatggtt ggttacgcat agcaggatct ggtcaccccc
    13321 ggttgccacg agatccagta agttggacac aacgccctga attcgcaggc gtgcgggctt
    13381 tacccatcgc tgacgatgtc gcagggggaa tttttgctct taatggtggc gatcttgggg
    13441 aagatactgg ctgcgtttat tattttgcgc cagatacgct gaattgggaa agtctggaag
    13501 ttggatattc tgagtttctt cagtgggcat tatccggtga tttagatacc ttctatgaaa
    13561 atgtacgatg gcagcaatgg cgagaagacg taataaaatt atcggcaacg gaagccttca
    13621 cgttctaccc tttcttatgg gtacaaagtg aagaagcaag aacaagaaaa gttatttcgc
    13681 ttactgaact ctgggaaatg cagtatcaaa tgaaagaaac attcacgcaa taagacatgt
    13741 tcaggtccgg gtttcattcc cggactcact attttaatgt gtatttatcg ctttcaattc
    13801 ttgctggcaa ttttctgact ggcagcgtcg taactcaata atcccgacat gcatcatcga
    13861 gccaaaaaat ccgctttcgc tgacataatc ctcattgact atcggtcgag tgccgggctt
    13921 gccctggcaa acccgcataa aaaatgaggt gtagcattgc caaccgggat ttaaaccgac
    13981 cttttcttgt gctgacatat tatgaagata agtaagttct ttttcgttcc cgcctgacaa
    14041 ctgccagcgg cgggtattat caggtaagtt atcaccacgg caatttgtct tacaccggga
    14101 aggtgcaata tttaccgcaa tgctacccgt taatcttctg gttttatctt taggggtcag
    14161 taaccagtcg ccagctaatg atgattgttc aggttgggcg catgcagtca gcagtaatgt
    14221 ggcggtaatt agtgacacta tgacgaccag actcctgttg gtcttcattg ggatttcctt
    14281 gagctactca gtttgttgac aaagtgttcg ttgtttttgc cggatgcggc gtgaacgcct
    14341 tatccggcct acaaaatctc gtaaattcaa tatattgcac catcctcgta ggcctgataa
    14401 gcgtagcgca tcaggcaatt ctgtgtttgt catacgtaaa aaagggcgat cttccgaccg
    14461 ccctttttct tatttaatgt gtttacgcgt ttttcagaac ttcgctaaca atctcaaccg
    14521 cttctttctc aatctgcttg cgatgttctt caccgaggaa gctttcgcag tagatcttat
    14581 atgcgtcttc cgtgcctgac ggacgcgcgg cgaaccagcc gttgtcagtc atcactttca
    14641 gaccgccgat agaagcacca ttgcccggtg ccgccgtcag gcgcgcggtg atcgggtcgc
    14701 ctgccagggt gctggcgctc accatttccg gagacagctt agacagcgcc gctttttgtg
    14761 cggaagtcgc agctgcctgc aaacggttgt agctcggcgc accaaagcgt tttgccagtt
    14821 cgttgtagtg ttcctgcggg ttcttaccgg tgacagcggt gatttccgcc gccagcagac
    14881 acatgatgat gccgtctttg tcggtggacc acggcgtgcc gtcgaaacgc aggaaggaag
    14941 cccctgcgct ctcttcgccg ccaaagccga agctgccgtc gaacagacca tcaacaaacc
    15001 atttgaaacc taccgggact tctaccagct tgcggcccaa gtcattgacc acacggtcga
    15061 tcatcgcaga agaaaccagc gttttaccga cagcaacatc tttgccccac tgcggacgat
    15121 gctggaacag gtagttgatc gccaccgcca ggtagtggtt cggattcatc aaacctgccg
    15181 gagtgacgat accgtgacgg tcataatccg ggtcgttagc aaacgccaga tcgaacttat
    15241 cacgcagtgc cagcaggccc gccatcgcac actcggagga gcagtccata cggatcgcgc
    15301 cgtctttatc aaggtgcata aagcggaagg tttgatcgac ctgatcgtta acgatggtca
    15361 ggttgaggtt gtaatactcg ccaatacgct tccagtattc gataccggaa ccgcccagcg
    15421 gatcaacgcc cagcgtcagg cccgctttct gaatcgccgc catatcaacg atatcggcca
    15481 gaccttccac aaacggctgc accagatcct gctctttcac atgaccggat gccatcgctt
    15541 cgtcgaggga gatacgcttc acgcctttca ggccatcggc cagcagtgcg ttggccctgt
    15601 cttccaccac tttggtgacg ttggtatcag ccgggccacc atttggcgga ttgtacttga
    15661 taccaccatc ttccggcggg ttatgggacg gtgtaatcac gataccgtct gccagcggac
    15721 cacctttttt attgtgaacc aggatggcat tggaaacggc aggcgttgga gtgaagccat
    15781 tgttttcctg cacaatgaca tcaacgccgt tcgctgccag cacttccagt acggaaatga
    15841 acgcaggctc ggacagggcg tgagtatctt tacccacata gcaagggcca gtgatgccgt
    15901 ttttcgcacg ttcttcagca attgcctgag cgatcgccag aatgtgcggc tcgttaaagc
    15961 tgtggcgcgc tgcactgcca cggtgaccgg aagtaccgaa tttcaccgcg tgctccgcat
    16021 tccctgcttc tggtttcagt acataatatt gcgccgtcag ttgggcgacg ttaatcaaat
    16081 cactctgttg tgcaggttgg cctgcacgat tgtggattgc cattgctttg tcctttgtct
    16141 gcaacgtttt agatagttcc gcaaaccttc tcaatcaatt ccgccgggaa ttgcatcgac
    16201 tgcatgatgt gttcgatcat gctgcattta cggccggtgt tggtgttggt gatcacccaa
    16261 tacggcgtgc ctggcacatg tttcggcttg gtctgattac catttttcag cagcgtttgt
    16321 tcatctgccg caaagtaaac gcgtgtacga ccgtgcaacg attccgttgc ttcggcaaac
    16381 gcctgggcgt caagagaata tagtgtagac aacagcagca taaagcgatt gaccgctcgc
    16441 ttttgctctg cgtattcgtc agaaagcaga agttcacgca ttgcgcgaac cttgtcttta
    16501 atcgttttga ccggcttcgc ttcggcgata gcaggtgacg caacgcgaac ctctttcgtc
    16561 accggagcag caggctgtga tgcggcggaa aatttcaaca tacgccgtaa aatgtcggat
    16621 gcgctctcgc cgatatgctt agtgtggctg gcaatatagc tgtagagttc atcatcaact
    16681 tcaatcgttt tcatcttaat ccagtgcagt gtcttagctg aatacaagtc gccaagagta
    16741 tatgaataaa tcccggcagc ggatagcgtc aagcctggct tgcagaaaaa ctcggaataa
    16801 accttatttg ttgcagccct gtggcacaat ggtcaacata ataccctaac ccgacaacgc
    16861 gaaaaaaaga actttgccat gaaattgaat atccgcgcgc aaactgcaca aaaccagcac
    16921 aataattctc ccatcgttct tgtccatggt ctgtttggta gcctcgacaa ccttggcgta
    16981 ctggctcgcg atctggtaaa cgatcacaat atcatccagg ttgatatgcg taaccacggt
    17041 ctttcaccga gagatccggt aatgaattac ccggcgatgg cgcaggatct tgttgatact
    17101 ctggatgcac agcagatcga caaagcaaca tttatcggtc actccatggg cggtaaagcg
    17161 gtaatggcac ttacggcact ggcccgcgat cgcatcgata aactggtggc gatcgatatc
    17221 gcaccggtcg actatcacgt acgccgtcat gatgagattt tcgcggctat caacgcggtc
    17281 agtgaatcgg acgcacaaac tcgccagcaa gcagcagcaa taatgcgcca gcatcttaat
    17341 gaagaagggg tgattcagtt tctgttgaaa tcttttgttg acggggagtg gcgctttaac
    17401 gtgccggtat tgtgggatca gtatccgcat attgtgggtt gggagaaaat cccggcatgg
    17461 gatcaccctg ccctgtttat ccctagcggc aattctccgt atgttagcga gcagtaccgt
    17521 gatgatttac tggcacaatt tccacaggca cgggcgcatg tgattgcagg cgcgggtcac
    17581 tgggtccatg ctgaaaaacc ggatgcggta ttacgcgcta tccgtcgcta tctcaatgat
    17641 taacgcaact gattaaaaac ccagcgtccg cgtcgctttc cgcgcgtggg cgttggcgtg
    17701 actcatcgcg ctgatgtatt atggcgcgct atccatccgg gcagaggcct ggctgattgt
    17761 ttcccccgaa gtcaccaaga tcatggccaa agaacaaacg gaccgtacga cattagatct
    17821 gttcgcgcac gagcgtcgac cgggacgacc gaaaactaat ccgctttcgc gcgatgaaca
    17881 gctgcgtatt aataaacgca accagctaaa acgcgacaaa gtacgtggcc ttaagcgtgt
    17941 cgaactgaag ctgaacgcgg aagctgtcga ggcgctgaac gagctggcgg agtcgcgcaa
    18001 tatgagccgt agcgaactga tcgaagagat gttaatgcag caactggcgg cgctgcgtag
    18061 tcagggcatc gtttaaattt ccactttcat gtagcacagt gtgcagtcct gctcgtttgc
    18121 tgattccgaa agactgcctg ttctgctatg attgccttta tccgtgggca attttccacc
    18181 cccatttcaa taagtttcaa gaggttattt cactcatggc tatcactggc atctttttcg
    18241 gcagcgacac cggtaatacc gaaaatatcg caaaaatgat tcaaaaacag cttggtaaag
    18301 acgttgccga tgtccatgac attgcaaaaa gcagcaaaga agatctggaa gcttatgaca
    18361 ttctgctgct gggcatccca acctggtatt atggcgaagc gcagtgtgac tgggatgact
    18421 tcttcccgac tctcgaagag attgatttca acggcaaact ggttgcgctg tttggttgtg
    18481 gtgaccagga agattacgcc gaatatttct gcgacgcatt gggcaccatc cgcgacatca
    18541 ttgaaccgcg cggtgcaacg atcgttggtc actggccaac tgcgggctat catttcgaag
    18601 catcaaaagg tctggctgat gacgaccact ttgtcggtct ggctatcgac gaagaccgtc
    18661 agccggaact gaccgctgaa cgtgtagaaa aatgggttaa acagatttct gaagagttgc
    18721 atctcgacga aattctcaat gcctgatgtg atgcggcgta gactcatgtc tacgccgtat
    18781 taatagataa tgccaatcaa aataattgct acaaatttgt aacttttgct gttgtacctg
    18841 tacaatgtcc cggtgttcaa gtggccttgc cgttgtaaat gtaagctgtg ccacgttttt
    18901 attaacaata tttgccaggg acttgtggtt ttcatttagg cgtggcaatt ctataatgat
    18961 acgcattatc tcaagagcaa attctgtcac ttcttctaat gaagtgaacc gcttagtaac
    19021 aggacagatt ccgcatgact gataacaata ccgccctaaa gaaagctggc ctgaaagtaa
    19081 cgcttcctcg tttaaaaatc ctggaagttc ttcaggagcc ggacaaccat cacgtcagtg
    19141 cggaagattt atacaaacgt ctgatcgata tgggtgaaga aattggtctg gctacggtat
    19201 atcgcgtact gaaccagttt gacgacgctg gtatcgtcac ccgccacaat tttgaaggcg
    19261 gtaaatccgt atttgaactg acacagcaac atcaccacga tcacctgatc tgcctcgact
    19321 gcggcaaggt tatcgaattt agtgatgatt ccatcgaagc gcgtcagcgt gaaattgccg
    19381 caaaacatgg cattcgcctg actaaccaca gtctctatct ttacggtcac tgtgccgaag
    19441 gcgattgccg cgaagatgaa catgcgcacg aaggcaaata agccagcctg aatgagaaaa
    19501 agccaacctg cgggttggct tttttatgca agggaaataa gaaaagcgag agttacagct
    19561 ctcacttatt tgttattact gcgaatttcc tgccaaactt tatcacaatc ggctttcacc
    19621 gcctgatcat ttccggtttg cgttgcacgc agacactgct gataatccag tacgcggaca
    19681 ctttcctggt cggcaaaatg ctgatgttgt ttctctttct tcagcacgtt taacacgctc
    19741 tggcaggctt caattttttc tggcgaacct tgtgcggtgt tgatacaggc gctgtatgcc
    19801 tctttcagac gactgtcttc ctgtggcgcg gttgattgcg cacaagctac cagccccgat
    19861 gccattatgg cgatgagaat cagttttttc atagcaaatt cctcaaacgt gcggcaggca
    19921 caaaacctgc cgcgtcgggc atcagaagat ggtgaatggt gcgattacca taaatttcac
    19981 gtcacgctca tcctggaaga tgttgccgta accaccgccc cagcttggga tgtcggagtg
    20041 gttgtcgtat tcggtgaagt gcagtttgaa catcgtgcct ttggcgcgac cgtcctgaat
    20101 ggtgtagacc gcatccaggc tgtatgcaga ctcttcaata gtccggtttt tgtcgtagta
    20161 cgcatccgga ttgctctgcc aggtcgcagg tttagcatcc catgcgtaaa cgtaggaagc
    20221 gccgatggcg aagcctggaa gattccagtt tttcaggtca tacatcgcac cgaagaagac
    20281 cgctttttcg ccgttagcgt tgaagtcgga acggttatcc caccagatat ccaggcggcc
    20341 gttggaggaa gcgtaggctg gagtcatacg ttgcaggaag tatccctgct gaccgtcagc
    20401 cttaacccag gtgccttcga ggcgcaaatc cactacgtca gccgcccggt aaccaaaggt
    20461 caacgcttgc agccaggcgg tgccgtcata aaggtcgttg acgctgcgat cgtcaacttt
    20521 atcgcgcgta ccatagaact ggtagctggt ggttaacggg ctaccggcga tatcaaattt
    20581 gtagctggct ttggcaaaat attgatcgat atacccttcc gcctgaccaa atgccgcttc
    20641 cagtacgaag ttatttttga agtcgtattt cgccccaagg gagtgcagat aatcaacttt
    20701 ggtggtttta tcgttctgat aaaactcatc catttccaga tgccacggcg ctttgtattc
    20761 gttggtccac atgtaggaga aactcaacgc accagcatcg ccgtaatcaa aattcgcccc
    20821 ggcttccgcc ccctgataag tacctggcat aaagctccag tgcggcgcta acagcgtttg
    20881 accagttggc tgaatgtaac ctgccctcgc ccaaaccgga ccgtatttaa atttggccgc
    20941 agctttatac aggcttatac cgcttttgtc gccggaccag tcttcgtcat aggctttatt
    21001 actttttgaa aacgcgattt cgttcgggtg ggagctgtcg ccgttttccg ccatttcaat
    21061 cgccgtaaac acagcaatat caaggccgaa catatcagca gcataaccgg actgaaaatc
    21121 gaggttggca ttccaggtgg agtgagaaag gttggttttg tatttgtcgc cgtcggtaac
    21181 atctttacgg tcgcgttcac gctgccagta atatataccg ccggttaagg ttgaatcgtc
    21241 gatgaatcct tcggcgcgag cctccggcat tgccataaag cccgacattg ctgtaacacc
    21301 ggcgatagcc agcgccagcg tactacgttt gccactaaac gtacgcatgg gttaatcctc
    21361 tttgacgtat aaattgctgc accaaaggtg aacagcgaaa aaaataaaaa ttaaaaaagt
    21421 agcattgaga aaagtctcgc tgactacagg aatagactat ttttcgcgac gcgaattatc
    21481 aatctctttc tgtaaccaga atgtaagaac atgagcaacc gcacatattt tgatgatttt
    21541 tgttacaagg cttaagtttg cggttgaaag gcttgcagaa gaataaaagc gtaaatttcc
    21601 agcaagatga aagcggttac attttattta attatggttt gtgattttaa atttatttta
    21661 tggataaatt gcgaagcgga attaattcgc gaagaaaagc agaaaaaacg ccgcagagtg
    21721 cggcgtttgg gattgtttgc tatttcttgc cggatgcgac gtaaatgcct cacccggcct
    21781 ggtagaactt aaaattactc gcctactttc gcccaggtat cacgcagccc aacggtgcgg
    21841 ttaaataccg gtttttccgc tgtggaatgg cggctgtcga ggcagaagta accttcacgc
    21901 tcaaactgga atgctttacc cgcaaccgca tctttcagcg acggttcagc aaagccctgt
    21961 ttgatcacca gcgattccgg gttaatcacc gacaggaaat catccgcagc acctgggtta
    22021 ggcacgctga acagacggtc gtacagacgg atttcaaccg gcagcgcatg tgccgcgctc
    22081 acccagtgaa taacaccttt gactttacga ccatctgccg gatctttgct taaggtgtcg
    22141 gcgtcataag tacagaagat ggtggtgata ttgccttcgg catctttctc cacgcgttct
    22201 gccttaatga cgtaagcatt acgcagacgc acttctttac ccagcaccag acgtttgtac
    22261 tgcttgttag cttcttcgcg gaaatcggcg cgatcgatcc aaatctcact gctaaacggc
    22321 acctggcggc tacccatttc cggtttgttc ggatggttcg gcatggtaac catttcgcct
    22381 tcgccctgat agttttcgat aaccagtttc accggatcga taaccgccat tgcgcgcggg
    22441 gcgttttcgt tgagatcttc acggatgcag gattccagcg acgccatctc aatggtgttg
    22501 tcctgcctgg tcacgccgat gcgtttgcag aactcacgaa tagaagcagc agtgtaacca
    22561 cgacgacgca gaccggaaat ggtcggcata cgcgggtcat cccagccttc aacgtgcttg
    22621 tcggtcacca gcaggttcag cttacgcttg gacatcacag tgtattccag attcaggcgc
    22681 gagaattcgt actggcgcgg gtgaacagga atggtgatgt tgtccagcac ccagtcgtac
    22741 aggcgacggt tgtcctggaa ctcaagcgta cacagagagt gcgtaatacc ttccagggca
    22801 tcgctgatgc agtgggtgaa gtcgtacatc gggtagatgc accacttgtt gccagtctgg
    22861 tggtgttcag caaatttaat gcggtacagc accggatcgc gcatcacgat aaacggtgaa
    22921 gccatgtcga ttttcgcacg caggcaggct ttaccttctt caaaaccacc ggcacgcatt
    22981 ttttcgaaca gcgccaggtt ctcttcaacg ctgcggtcgc ggtacgggct gtttttaccc
    23041 ggttgcgtca gggtgccgcg gtattcgcgg atctgttccg gcgtcagttc atcaacgtac
    23101 gccaggcctt tattgatcag ttcgatcgca taggcgtgga gctgatcaaa ataatcggag
    23161 gagtaacgga cgttaccaga ccagtgaaaa cctaaccact ctacgtcgtt tttgatcgac
    23221 tcaacatact cgatatcttc ttttaccggg ttagtgtcgt cgaaacgcag gttgcactgg
    23281 cctttatagt cctgggcgat cccgaagttc aggcagatag atttcgcatg gccaatatgc
    23341 agatagccat tcggctccgg cgggaaacgg gtgtgtactg tggtgtgctt accactggcc
    23401 agatcttcat cgatgatctg acggataaag ttagtcgggc gggcttctgc ctcactcatc
    23461 gtggattcct caaagcgtaa acaacgtata acggcgtatg atcttataag cggaacaggc
    23521 tgacaactgt tagtttttta aaattgataa tctaacaagg attatgggga tgattgatga
    23581 aaaaaaaagc ggcagagaag atctccaccg cttgtcattg ttggatgcga cgctcaagcg
    23641 tcgcatcagg cataaagcag attacttttt gatttcatac agcggtgttt gacccgccac
    23701 aacatggccc tgagctttaa tgatcaagcc actgaaatcg tcgatattgc tgcaaaccac
    23761 cgggctaatc atcgagcggg cgttagcgtt caggtaatcc agatccattt ccagaatcgg
    23821 ttgccctgcg cttacctgcg caccctcttc caccagacgt ttaaagcctt taccttccag
    23881 cgctacggtg tcgataccca tatggacgac gatctccgcg cctttttcgg tttccaggca
    23941 gaacgcgtgg ttggtgttga agattttcac gattgtccct gcggctggtg atacgacgat
    24001 tttatctgtc ggtttcaccg ccacaccgtc acccaccgct ttgctggcga atgcttcgtc
    24061 aggaacctga tccagtgcca cgacatcacc ggtaatcggc gataccagct ccgcgataga
    24121 taccgcgttt ggtacagcct gcggttttgc tacaggcgcg gcagttgacg gagttgcttc
    24181 agctgacgca gcggctaccg gaccacgggc aacgactttc ttcatcgcat cgccgatgga
    24241 ttctgctttc gcgccaacaa tcacctgaat agtctgtttg ttcagtttca ctacaccaga
    24301 agcacccaga cgtttacaca tcgtatcgtt gacgcgggca gagtcagcca cggtcaggcg
    24361 cagacgggtg atacaggcgt caattgcttt caggttgtca gtgccgccaa ccgcagcaat
    24421 atagttggtc gccagttgat tgaggccttc ttcagtgttg ctgttggctt cttcagtaac
    24481 gatctcatct tctttatctt cacgacccgg cgttttcagg ttgaacatgc ggataaccaa
    24541 actgaacacc acgaagtaga tagcgaagaa gacaacaccc atcaccagca gcatccagac
    24601 gttctggctg gcggccggca ggttatacat caacgcgtag tcgatagccc ccgcagagaa
    24661 agagaagcca gcatggatac ccagcagtgt tgccacaaac aggctgatac cggtcagcag
    24721 tgcgtgcagg aggtacagca gcggtgcaag gaacatgaac aggaattcca gcggctcagt
    24781 cacaccggtc aggaacgcag taacagcaac agaaagcagc atcccgccaa ccatcggacg
    24841 acgctctttc ggtgctgcga agtacatcgc cagcgccgca cccggcagac cgaacatcat
    24901 aatcgggaag aagccggaca tgaacatccc cgcggtgccg tcaccggcat agaagcggtt
    24961 gatatcaccg tggaaaaccg tacccgccgc gttggtgaat tcaccaatct ggaaccaggc
    25021 gatggtgttc agcacctgat gcagaccggt tgggatcagc agacggttga tgaaaccaaa
    25081 gataccggaa cccagcgcgc ccgcagaaac gatccactcg cctcctgcat ggatagcgtg
    25141 ctgtaccggc ggccagacgt aaccaaaaat ggccgccagc accaggcaga agaagccggt
    25201 ggcaatcggc acaaagcgtt tgccgccgaa gaagctcagg aagtccggca gtttaatatc
    25261 ggaccaacgg ttataggctg cgccaccaac cagaccggta atgatacccg ccagtacacc
    25321 catgtttatt tctgggttga tggtcaccat cgctttggtt aacacaaagt aacctaccgc
    25381 acccgccagc gccgccgcac ctgcgctgtc tttcgaccag ctggatgcca caccgatggc
    25441 gaagattaat gcgaggttat caaaaatcgc accgcccgcc tgggcaataa acgcaacgtt
    25501 aagtaaatct ggctgaccga atcgcagcaa cagtgccgcc accggcagca ccgcgatagg
    25561 gagctgtaac gccctaccga gtcgctggaa aaaacctaaa atattcatct tattccccct
    25621 acgagaaccc tatttggctc gtttaaagcc gtatttttat tttgctgcaa attgtactgc
    25681 cgatgttctg taatcagatt gttagatcat ctgctacaga gtgtgtgaaa atttaattcg
    25741 tatcgcaaat taaacgcgtg tcttttgtga gttttgtcac caaatatcgt tatcatcact
    25801 cccttttact ggctaaacca gaaaacttat tttatcattc aaaaaatcag gtcggattga
    25861 cgcctgtctg cgcaaatcca agttacgctt aaagatgcct aatccgccaa cggcttacat
    25921 tttacttatt gaggtgaata atgagactga tccccctgac taccgctgaa caggtcggca
    25981 aatgggctgc tcgccatatc gtcaatcgta tcaatgcgtt caaaccgact gccgatcgtc
    26041 cgtttgttct gggcctgcca actggcggca cgccgatgac cacctataaa gcgttagtcg
    26101 aaatgcataa agcaggccag gtcagcttta agcacgttgt caccttcaac atggacgaat
    26161 atgtcggtct gccgaaagag catccggaaa gctactacag ctttatgcac cgtaatttct
    26221 tcgatcacgt tgatattcca gcagaaaaca tcaaccttct caacggcaac gccccggata
    26281 tcgacgccga atgccgccag tatgaagaaa aaatccgttc ttacggaaaa attcatctgt
    26341 ttatgggcgg tgtaggtaac gacggccata ttgcatttaa cgaaccggcg tcttctctgg
    26401 cttctcgtac tcgtatcaaa accctgactc atgacactcg cgtcgcgaac tctcgtttct
    26461 ttgataacga tgtcaatcag gtgccaaaat atgccctgac tgtcggtgtt ggtacattgc
    26521 tggatgccga agaagtgatg attctggtgc tgggtagcca gaaagcactg gcactgcagg
    26581 ctgcagttga aggttgcgtg aaccacatgt ggaccatcag ctgtctgcaa ctgcatccaa
    26641 aagcgatcat ggtgtgcgat gaaccttcca ccatggagct gaaagttaag actttaagat
    26701 atttcaatga attagaagca gaaaatatca aaggtctgta attgttatcc ctgccctggc
    26761 tccttgctca gggcaatatt ttttaaaatc gggggtcaga atgtatgcat taacccaggg
    26821 ccggatcttt accggccacg aatttcttga tgaccacgcg gttgttatcg ctgatggcct
    26881 gattaaaagc gtctgtccgg tagcggaact gccgccagag atcgaacaac gttcactgaa
    26941 cggggccatt ctctcccccg gttttatcga tgtgcagtta aacggctgcg gcggcgtaca
    27001 gtttaacgac accgctgaag cggtcagcgt ggaaacgctg gaaatcatgc agaaagccaa
    27061 tgagaaatca ggctgtacta actatctgcc gacgcttatc accaccagcg atgagctgat
    27121 gaaacagggc gtgcgcgtta tgcgcgagta cctggcaaga catccgaatc aggcgttagg
    27181 tctgcatctg gaaggtccgt ggctgaatct ggtaaaaaaa ggcacccata atccgaattt
    27241 tgtgcgtaag cctgatgccg cgctggtcga tttcctgtgt gaaaacgccg acgtcattac
    27301 caaagtgacc ctggcaccgg aaatggttcc tgcggaagtc atcagcaaac tggcaaatgc
    27361 cgggattgtg gtttctgccg gtcactccaa cgcgacgttg aaagaagcga aagccggttt
    27421 ccgcgcgggg attacctttg ccacccatct gtacaacgcg atgccgtata ttaccggtcg
    27481 tgaaccgggc ctggcgggcg cgatcctcga cgaagctgac atttattgcg gtattatcgc
    27541 tgatggcctg catgttgatt acgccaacat tcgtaacgct aaacgcctta aaggcgacaa
    27601 actgtgtctg gttaccgacg ccaccgcgcc agcaggtgcc aacattgaac agttcatttt
    27661 tgcgggtaaa acaatatact accgtaacgg actttgtgtg gatgagaacg gtacgttaag
    27721 cggttcatcc ttaaccatga ttgaaggcgt gcgtaatctg gtcgaacatt gcggtatcgc
    27781 actggatgaa gtgctgcgta tggcgacgct ctatccggcg cgtgcgattg gcgttgagaa
    27841 acgtctcggc acactcgccg caggtaaagt agccaacctg accgcattca cacctgattt
    27901 taaaatcacc aagaccatcg ttaacggtaa cgaggtcgta actcaataag agaaagtatg
    27961 acaccaggcg gacaagctca gataggtaat gttgatctcg taaaacagct taacagcgcg
    28021 gcggtttatc gcctgattga ccagtacggg ccaatctcgc ggattcagat tgccgagcaa
    28081 agccagcttg cccccgccag cgtaaccaaa attacgcgtc agcttatcga acgcgggctg
    28141 atcaaagaag ttgatcagca ggcctccacc gggggccgcc gcgctatctc catcgtcacc
    28201 gaaacccgca atttccacgc aatcggcgta cggcttggtc gtcacgacgc caccatcacc
    28261 ctgtttgatc tcagcagcaa agtgctggca gaagaacatt acccgctgcc ggaacgtacc
    28321 cagcaaacgc tggaacatgc cctgttgaat gccattgctc agtttattga tagctaccag
    28381 cgcaaactgc gcgagctgat cgcgatttcg gtgatcctgc cagggcttgt tgacccggac
    28441 agcggcaaaa ttcattacat gccgcatatt caggtagaaa actgggggct ggtagaagct
    28501 ctggaagaac gttttaaagt gacctgtttc gttggtcacg atatccgtag tctggcgctg
    28561 gcggagcact acttcggtgc aagtcaggat tgcgaagact ccattctggt gcgtgtccat
    28621 cgcggaaccg gggccgggat tatctctaac gggcgcattt ttattggccg caacggtaac
    28681 gtcggtgaaa ttggccatat tcaggtcgaa ccgctgggtg aacgctgcca ctgcggcaac
    28741 tttggctgcc tggaaactat cgccgccaac gctgccattg aacaacgggt gttgaatctg
    28801 ttaaagcagg gctaccagag ccgcgtgccg ctggacgact gcaccatcaa aactatctgc
    28861 aaagccgcga acaaaggcga tagtctggcg tcggaagtaa ttgagtatgt cggtcgtcat
    28921 ctgggtaaaa ccatcgccat tgctatcaac ttatttaatc cgcaaaaaat tgttattgcc
    28981 ggtgaaatca ccgaagccga taaagtgctg ctccctgcta ttgaaagctg cattaatacc
    29041 caggcgctga aggcgtttcg cactaatctg ccggtggtac gttctgagct ggatcaccgc
    29101 tcggcaatcg gcgcttttgc gctggtaaaa cgcgccatgc tcaacggtat tttgctccag
    29161 catttgctgg aaaattaatg tgcttttata gtggcgctta ttgttgtcaa tattctgggt
    29221 agtccatgac cattaaaaat gtaatttgcg atatcgatgg cgtgctgatg cacgataacg
    29281 tcgccgtacc gggtgcagcg gaatttttgc acgggattat ggataaaggc ctgccgctgg
    29341 tgttgctgac caactatcct tcgcagactg ggcaagatct ggcgaaccgc tttgccaccg
    29401 caggtgtcga tgtacctgac agcgtgtttt atacctctgc gatggcgact gccgatttcc
    29461 tgcgtcgcca ggaaggcaag aaagcgtatg tggtgggcga aggcgcactg attcatgaac
    29521 tgtacaaagc cggtttcact attaccgatg tgaaccctga tttcgtgatt gttggcgaaa
    29581 cgagttccta caactgggac atgatgcata aagcagccta tttcgtcgct aacggtgcac
    29641 gttttatcgc caccaatccg gacacccacg ggcgcggttt ttatcccgcg tgtggcgcgt
    29701 tgtgtgcagg catcgaaaaa atctccgggc gtaaaccgtt ctatgttggt aaaccgagtc
    29761 cgtggatcat ccgcgcggca ttaaacaaaa tgcaggcgca ttcggaagaa acggtgattg
    29821 tcggcgataa cctgcgtacc gatattctgg cgggcttcca ggcaggtctg gaaacgattc
    29881 tggtgctttc tggtgtttca tcgctcgacg atatcgacag tatgccgttc cgcccaagct
    29941 ggatttaccc gtcggtcgct gaaatcgacg ttatctgaat agcaaccacg tctgcggacg
    30001 tggttggctc tgatgacaaa cgccaaactg cctgatgcgc tacgcttatc aggcctacgc
    30061 agctcctgca atatattgaa ttttcatgct tttgtaggcc ggataaggcg ttcacgccgc
    30121 atccggcatg aacaaattgc actttgtcag caatttggcc cccgtaaaat acaaacattc
    30181 aataaaaccc gctgaaaatt atcgattcat caataaatat atcctcacac cagacctttt
    30241 ttcaccaatc gacaatcacc attacgtttt ttattttttc accgccaaat cgcttgcgca
    30301 cagtgctgct ttgcggcatt tttttaaaca agcaaacaca acaagcaaca aataccagat
    30361 taacggagaa ggttatgtgt tcaatttttg gcgtattcga tatcaaaaca gacgcagttg
    30421 agctgcgtaa gaaagcactc gagctgtcac gcctgatgcg tcatcgtggc ccggactggt
    30481 ccggtattta tgccagcgat aacgccattc tcgctcacga acgtctgtca attgttgacg
    30541 ttaacgcggg ggcgcaacct ctctacaacc aacaaaaaac ccacgtactg gcggtaaacg
    30601 gtgaaatcta caaccaccag gcattgcgcg ctgaatatgg cgatcgttat cagttccaga
    30661 cagggtctga ctgtgaagtg atcctcgcgc tgtatcagga aaaagggccg gaatttctcg
    30721 acgacttgca gggcatgttt gcctttgccc tgtacgacag cgaaaaagat gcctacctga
    30781 ttggtcgcga ccatctgggg atcatcccac tgtatatggg ctatgacgaa cacggtcagc
    30841 tgtatgtggc ctcagaaatg aaatcgctgg tgccagtttg ccgcacgatt aaagagttcc
    30901 cggcggggag ctatttgtgg agccaggacg gcgaaatccg ttcttattat catcgcgact
    30961 ggttcgactt tgatgcagtg aaagataacg tgaccgacaa aaacgagctg cgtcaggctc
    31021 tggaagattc cgttaaaagc catctgatgt ctgatgtgcc ttacggtgtg ctgctttctg
    31081 gtggtctgga ttcctcaatt atttccgcta tcaccaagaa atacgcagcc cgtcgcgtgg
    31141 aagatcagga acgctctgaa gcctggtggc cgcagttaca ctcctttgct gtaggtctgc
    31201 cgggttcacc ggatcttaaa gcagcccagg aagtggcaaa ccatctgggc acggtgcatc
    31261 acgaaattca cttcactgta caggaaggtc tggatgccat ccgcgacgtg atttaccaca
    31321 tcgaaactta tgatgtgacc actattcgcg cttcaacacc gatgtattta atgtcgcgta
    31381 agatcaaggc gatgggcatt aaaatggtgc tgtccggtga aggttctgat gaagtgtttg
    31441 gcggttatct ttacttccat aaagcgccca acgctaaaga actgcatgaa gagacggtgc
    31501 gtaaactgct ggccctgcat atgtatgact gcgcgcgcgc caacaaagcg atgtcagcct
    31561 ggggcgtgga agcacgcgtt ccgttcctcg acaaaaaatt ccttgatgtg gcgatgcgca
    31621 ttaacccgca ggataaaatg tgcggtaacg gcaaaatgga aaaacacatc ctgcgtgaat
    31681 gttttgagtc atacctgccc gcaagcgtgg cctggcggca gaaagagcag ttctccgatg
    31741 gcgtcggtta cagttggatc gacaccctga aagaagtggc ggcgcagcag gtttctaatc
    31801 agcaactgga aactgcccgc ttccgcttcc cgtacaacac gccaacctca aaagaagcgt
    31861 atctgtaccg ggagatcttt gaagaactgt tcccgcttcc gagcgccgct gagtgcgtgc
    31921 ctggcggtcc ttccgtcgcg tgttcttccg ctaaagcgat cgaatgggat gaagcgttca
    31981 agaaaatgga cgatccatct ggtcgtgcgg ttggtgttca ccagtcggca tataagtaag
    32041 aaatgcgaaa cagccccggt gaaatccggg gctgtttcag ttattgaggt gcttgttgat
    32101 tctgatatgc agtaaggaaa tgttccgggt ttgccacatc actgtttgac aactcatcac
    32161 tgtaggccag tatttcatag attaatttcc caccactatt gttgaattcc gaatttcatc
    32221 ctgtacgaca aaagaatggc tgtagggtgg ggaaaaaaca caaagtaaac aataattgac
    32281 gaatatagcg ccacgctgtt cgcaacctaa ccaaatagtc actttcgagc aattttcctt
    32341 gaaaaagagg ttgacgctgc aaggctctat acgcataatg cgccccgcaa cgccgataag
    32401 gtatcgcgaa aaaaaagatg gctacgtagc tcagttggtt agagcacatc actcataatg
    32461 atggggtcac aggttcgaat cccgtcgtag ccaccatctt tttggcggga gtggcgaaat
    32521 tggtagacgc accagattta ggttctggcg ccgcaaggtg tgcgagttca agtctcgcct
    32581 cccgcaccat tcaccagaaa gtgttgtacg gatggggtat cgccaagcgg taaggcaccg
    32641 gtttttgata ccggcattcc ctggttcgaa tccaggtacc ccagccatct tcttcgagta
    32701 agcggttcac cgcccggtta ttggggtatc gccaagcggt aaggcaccgg tttttgatac
    32761 cggcattccc tggttcgaat ccaggtaccc cagccataga agaaacaatc tggctacgta
    32821 gctcagttgg ttagagcaca tcactcataa tgatggggtc acaggttcga atcccgtcgt
    32881 agccaccaaa ttctgaatgt gtcgaatacg ttcggcaaat tcaaaaacca atttgttggg
    32941 gtatcgccaa gcggtaaggc accggattct gattccggca ttccgaggtt cgaaccctcg
    33001 taccccagcc aatttattca agacgcttac atcgtaagtg cacccagttg gggtatcgcc
    33061 aagcggtaag gcaccggatt ctgattccgg cattccgagg ttcgaatcct cgtaccccag
    33121 ccacattaaa aaagctcgct tcggcgagct ttttgctttt ctgcgttcat tcaatgtcga
    33181 atgcgatgtt gacacgtctt atccttcaat gtcggatgcg acgctgccgc gtcttatccg
    33241 acctacggtt ggcacgcatc cggcaatgtt gtaaggctac aaccctaacg catatttcag
    33301 cgcctgacgt ttcaacacgc cagcacgctc tgccgccatt aacccgagat tacgcacaaa
    33361 acgcagcggc ggcagattat tactgaatcc ggcataaaac agatccatac cactttgcat
    33421 aatgaagtta tccgccatgc gccgcatctg gtaacgcttg aggacaggat aactggccca
    33481 cgcttcaccg taactgcggg cattcaccag aacatcaatc agggcatcga catcacgata
    33541 accaagattc accccctgcc ccgccagcgg atggatggta tgcgcggcat cgcccaccag
    33601 cgcaagcccc ggctgcacat actgcaacgc atgtcggcgc gtcagcggaa acgcaccagc
    33661 ggcaagcggt gtaacgtaac ccagacgcga cgggaaatgc ttcgcgattt ccgcctggag
    33721 ttgcgccata ttcatattct gcaactggcg aatacgcgcc ggagagtcat accacaccag
    33781 cgatgcccag ttatcaaaca acggcagaaa cgcacgcggt ccgtccgggg taaattgctg
    33841 ccaggtgctg tcgccgggat cgttctcaca ctgtacgcta atcaacatgc acgactgcgc
    33901 atactgccag gcatgaacgc caattcccgc catctgccgc acctgagaat ttgcgccgtc
    33961 ggcaccaatc accagtttcg cgcggatcgt ttcaccgccc ttcagttcca gctcctgaag
    34021 atcattatct cgatgtaatg caatcagcga gcctggcaca cgtaacgtta ctttcggatg
    34081 cgcttccagc gcctgccaca gcgcctgttg cagtacggtg ttttccacca tatagccaag
    34141 caacggtagc ttaagttcag cggcgtcaaa caccacatgc gccgtttccc actcccacgt
    34201 ttccagtctg cggtaaggat ggcaacgcat agcctgtact gcatcccaga cccctaaccc
    34261 tttaagcaat gataccgatg cggcgctgat cgccgagatc cgcacgtccg gttggctatc
    34321 agcgacaaac ggtgcaggtt ctgcgtgctc gatcaccgtt accgaaaatc cgtgctgtgc
    34381 cagccccagc gccagcgcgc cgccgaccat tcctccgccg acaatggcaa tttccgttgg
    34441 ttgatttgtc atggtcaatc atcctgttag caatatgctt taagtttaca ggatttttac
    34501 ccccaagggc tgataacgct catactggcc acaacggcag caaagcatta cactatgcgc
    34561 cctgcattcc tggctactat ttcgcaagag caagtcgatg accaaaaaac tccatattaa
    34621 aacctggggc tgtcagatga acgagtacga ttcatcgaag atggccgatc tgctggatgc
    34681 cacccacggc tatcaactga ccgacgtggc ggaagaagcg gatgtgctgc tgctgaacac
    34741 ctgctcaatc cgcgagaagg ctcaggaaaa agtcttccat cagttgggtc gctggaaact
    34801 gttaaaagag aagaatccag acctgattat cggcgtcggt ggctgcgtgg catcgcaaga
    34861 aggcgagcac attcgccagc gcgcccacta tgtcgatatt atttttgggc cgcaaacgct
    34921 gcaccgtctg ccggagatga tcaactccgt gcgcggcgac cgcagcccgg ttgtagatat
    34981 cagcttcccg gaaatcgaga agtttgaccg tctaccggaa ccgcgcgccg aagggccgac
    35041 cgcgtttgtc tccatcatgg aaggctgcaa taaatattgc acctactgcg tggtgcctta
    35101 cacccgtggt gaagaggtaa gccgtccgtc tgacgatatt ctgtttgaga ttgcccagct
    35161 tgcggctcag ggcgtgcgtg aagtcaacct gctcggtcag aacgtgaacg cctggcgtgg
    35221 tgaaaactac gacggctcca ccggatcgtt tgccgatctg ctgcgtctgg ttgctgcgat
    35281 cgacgggatc gatcgtattc gctttaccac cagccatccg atcgaattca ccgacgatat
    35341 catcgaagtg tatcgcgaca cgccggagct ggtgagcttc ctgcatctgc cggtacagag
    35401 cggttccgat cgcattctga acctgatggg ccgtactcat acggcactgg agtacaaagc
    35461 gatcatccgt aaactgcgtg cggcgcgtcc agatattcag atcagttctg atttcatcgt
    35521 tggcttccct ggcgaaacca ccgaagactt cgagaaaacg atgaagctga ttgccgacgt
    35581 caatttcgac atgagctaca gctttatctt ctctgcacgt ccgggtacac cagccgccga
    35641 tatggttgat gatgttccgg aagaagagaa gaagcagcgt ctgtatattc tgcaagaacg
    35701 tatcaatcag caagcgatgg catggagccg ccggatgctc ggcaccaccc agcgtattct
    35761 ggtagaaggg acttcgcgta agagcatcat ggagctttcc gggcgtaccg aaaataaccg
    35821 cgtggtcaac ttcgagggca caccggatat gatcggtaaa ttcgtcgatg tagaaattac
    35881 cgacgtctac ccgaactctc tgcgcggtaa agtggtgcgt actgaagatg aaatgggcct
    35941 gcgcgtggca gaaacaccgg aatcggtgat tgcccgtacc cgcaaagaaa acgaccttgg
    36001 cgtgggttat tatcagccgt aattctcagg cccgccgttc cggtgggcct tgttttttct
    36061 ctctttatcc ccatctttat cgcaatgctt gcgccttttt cctgtggcgt gaataatttc
    36121 cttataggcc ggtgaatgtt cagcttccgg cggcatacag ataagaggaa cggtttgaac
    36181 atagacactc gcgaaatcac cctggagcca gcagacaacg cgcgtctgtt gagcctgtgc
    36241 ggcccgtttg atgacaacat caagcagctc gaacgccgtc tcggcatcga gatcaatcgc
    36301 cgcgacaacc actttaaact gaccggccgt ccgatttgcg tcaccgctgc ggcagacatt
    36361 ctgcgtagcc tgtatgtcga tacagccccg atgcgcggtc agattcagga tatcgaaccg
    36421 gaacagatcc accttacgat taaagaagcg cgagtactgg agcaaagtgc ggagagcgtg
    36481 ccggagtacg gcaaagcggt caatatcaaa accaaacgcg gcgtaattaa gccgcgcacg
    36541 ccaaaccagg cgcagtacat cgccaatatt ctcgaccatg acattacctt cggcgttggc
    36601 ccggcgggta cgggtaaaac ctacctggca gtggctgcgg cagttgatgc cctggagcgt
    36661 caggagattc gccgtattct gctgactcgt ccggcggtcg aagccggtga gaaactgggc
    36721 ttcctgcctg gcgatttaag ccagaaagta gacccgtatc tgcgcccact gtacgacgcg
    36781 ctgtttgaaa tgctgggctt tgagaaagtt gagaaactga ttgagcgcaa cgttattgaa
    36841 gtcgcgccgc tggcctatat gcgtggtcgt acgctgaacg acgcgtttat cattctcgat
    36901 gagagccaga acaccaccat cgaacagatg aagatgttcc tgacccgtat cggttttaac
    36961 tcaaaagcgg ttatcaccgg cgacgtcaca cagatcgacc tgccgcgtaa tactaaatca
    37021 ggcttacgtc acgccatcga agtactggcc gatgtcgaag agatcagctt taacttcttc
    37081 cacagcgaag acgtggttcg tcaccctgtg gtggcgcgta tcgttaacgc ctatgaagcc
    37141 tgggaagaag ccgaacaaaa acgaaaagcg gcgctggcgg cagaacgcaa gcgcgaagaa
    37201 caggaacaaa aatgagtcag gtgatcctcg atttacaact ggcatgtgaa gataattccg
    37261 ggttaccgga agagagccag tttcaaacat ggctgaatgc ggtgatcccg cagtttcagg
    37321 aagaatcgga agtgactatt cgcgtggtcg ataccgccga aagccacagt ctgaatctga
    37381 cctatcgcgg taaggataag ccgaccaacg tgctctcctt cccgtttgaa gtgccgcctg
    37441 gcatggaaat gtcgctactg ggcgatctgg ttatctgccg tcaggtggtt gagaaggaag
    37501 ctcaggagca aggcaaacca ctggaggcgc actgggcgca tatggtggtg cacggcagtc
    37561 tgcatttgtt aggttacgat cacatcgaag atgacgaagc agaagaaatg gaagccctcg
    37621 aaacagagat tatgcttgct ctgggctatg aggatccgta cattgccgag aaagaataat
    37681 ttgccaggca tttgactggc agacgtcccc gccgttggtg attaacgacg gcgttttgat
    37741 taactaacat gagaacccat acgacgccat gagcgacgac aattcacaca gtagtgacac
    37801 gataagcaac aagaagggat ttttctccct gttactcagc caacttttcc acggtgaacc
    37861 gaaaaaccgt gacgaactgc tggcgctgat ccgtgattcc gggcagaacg accttatcga
    37921 cgaagatacg cgcgatatgc tcgaaggggt gatggacatc gcagaccaac gcgttcgcga
    37981 catcatgatc ccccgctccc agatgattac cctgaaacgc aaccagacgc tggacgaatg
    38041 ccttgatgtc atcatcgagt ccgcccactc acgtttcccg gtgattagcg aagacaaaga
    38101 tcacattgaa gggattctga tggcgaaaga cttgctgccg tttatgcgca gcgatgctga
    38161 agccttcagc atggacaaag tgttacgtca ggcggttgtc gttcctgaaa gtaagcgcgt
    38221 agaccggatg ctgaaagagt ttcgctctca gcgttaccac atggcgatcg tcattgacga
    38281 attcggtggg gtttccggtc tggtgaccat tgaagacatc ctggaactga ttgttggtga
    38341 gattgaagac gaatatgacg aagaagatga tatcgacttc cgtcagctga gtcgtcatac
    38401 ctggaccgtg cgcgcactgg cttccattga agacttcaac gaagcgttcg gcacccactt
    38461 tagcgatgaa gaagtcgaca ctatcggtgg tctggtgatg caggcgtttg ggcatcttcc
    38521 ggcgcgtggc gaaactatcg acatcgacgg ttaccagttc aaagtggcga tggccgacag
    38581 tcgacgtatt attcaggttc atgtcaaaat cccggatgac tcaccccagc cgaagctgga
    38641 tgaataaaac cgaaactgga tagataacta catggctttt gcctcattaa ttgaacgcca
    38701 gcgcattcgc ctgctgctgg cgttattatt cggtgcctgc ggaacgctgg ccttctctcc
    38761 ttacgacgtc tggcctgcgg cgattatttc gttgatgggg cttcaggcgt tgacctttaa
    38821 ccgccgtcca ctccagtctg ccgctattgg cttttgctgg ggatttggcc tctttggcag
    38881 cggtattaac tgggtctatg tcagcatcgc gacctttggc ggaatgcctg gcccggttaa
    38941 catcttcctg gtggtgctgc tggcggcgta tttgtcgctg tataccggac tgtttgctgg
    39001 cgtgctgtcg cgtctgtggc cgaaaaccac ctggctgcgc gtggcgattg ccgcccctgc
    39061 tctctggcaa gtgaccgagt ttctgcgcgg ttgggtactg acaggcttcc cgtggttaca
    39121 gttcggctat agccagattg atggcccgtt aaaagggctg gcaccgataa tgggcgtgga
    39181 agccattaac ttcctgctga tgatggttag tggcctgctg gcactggcgt tggtcaaacg
    39241 caactggcgt ccgctggtgg tggccgtcgt gctgtttgcc ctacccttcc cgctgcgtta
    39301 catccaatgg tttaccccgc aaccggagaa aaccattcag gtttcgatgg ttcagggcga
    39361 tattccgcaa tcactgaaat gggatggaga tcagcttctt aatacgctga agatttacta
    39421 caacgcaacg gctccgctga tgggcaaatc atcgttgatt atctggccgg agtcggcgat
    39481 aaccgatctg gaaattaatc agcaaccgtt cctcaaagca ctggacggtg agttgcgcga
    39541 taaaggtagc tcgctggtaa ccgggattgt cgacgcgcgt ctcaataagc agaaccgcta
    39601 cgatacctac aacaccatca tcacactggg taaaggtgca ccgtacagct acgaatcagc
    39661 cgatcgctat aacaaaaacc atctggtgcc gtttggcgag tttgtcccgc tggagtcgat
    39721 tctgcgtccg ttagcaccgt tctttgatct gccgatgtcg tcgttcagcc gtgggccata
    39781 tatccagccg ccgctgtcag taaatggtat tgagcttact gcggctattt gctacgagat
    39841 cattctcggc gagcaagtgc gcgataactt ccgcccggat accgactatc tgctgactat
    39901 ctccaacgat gcgtggtttg gtaaatctat tggtccatgg caacacttcc agatggcgcg
    39961 aatgcgtgcg ctggagctgg cgcgcccact gttgcgcagc accaacaacg gcattacggc
    40021 ggtgattggc ccgcagggtg agattcaggc gatgatcccg cagttcaccc gcgaggtgtt
    40081 aaccactaat gtgacaccga ccaccggact cacaccgtat gcacgtaccg gcaactggcc
    40141 actgtgggtg ctgacggcac tgtttggttt tgccgctgtg ttgatgagtc tgcgagcacg
    40201 taaacgttga tgtgcctgat gtatcctgca tgagcaaaac gtactttctc attgagcttt
    40261 ggggcatggt tatcatgccc ctttttctta cggttcaggg atacaagcca cattgccata
    40321 ttggggatga cgaataattg cctgcggatc aagcgagcgc gtcctgtcca tttggatcaa
    40381 cccgtt
//
LOCUS       DAJVUY010000015        39771 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.015, whole genome shotgun sequence.
ACCESSION   DAJVUY010000015 DAJVUY010000000
VERSION     DAJVUY010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39771
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.015"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            7..438
                     /locus_tag="OQQ72_000741"
     CDS             7..438
                     /locus_tag="OQQ72_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HCS2010566.1"
                     /translation="MALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFA
                     VQSGPMLLENGVINPRIHPNVASRKIRNGVGINKQGNAVFLLSQQATNFYDFACYAKA
                     KLNVEQLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG"
     gene            521..1423
                     /locus_tag="OQQ72_000742"
     CDS             521..1423
                     /locus_tag="OQQ72_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HCS2010567.1"
                     /translation="MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGV
                     AFGVDHNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVV
                     LKTKSGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
                     ARLASGAITFEQVGPELPAKVVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDEL
                     LNQAEIKLNDTLCVTISEGSQQKYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNM
                     DNFAQKHQVASGADWNIDVKKCAK"
     gene            complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ72_000743"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             complement(1468..3630)
                     /gene="uvrD"
                     /locus_tag="OQQ72_000743"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HCS2010568.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCLPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ72_000744"
     CDS             complement(3714..4430)
                     /gene="yigB"
                     /locus_tag="OQQ72_000744"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HCS2010569.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ72_000745"
     CDS             complement(4430..5326)
                     /gene="xerC"
                     /locus_tag="OQQ72_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HCS2010570.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            complement(5323..6030)
                     /locus_tag="OQQ72_000746"
     CDS             complement(5323..6030)
                     /locus_tag="OQQ72_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HCS2010571.1"
                     /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ72_000747"
     CDS             complement(6027..6851)
                     /gene="dapF"
                     /locus_tag="OQQ72_000747"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCS2010572.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            complement(6896..7090)
                     /locus_tag="OQQ72_000748"
     CDS             complement(6896..7090)
                     /locus_tag="OQQ72_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004987677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2010573.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGMVHPR"
     gene            7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ72_000749"
     CDS             7553..7873
                     /gene="cyaY"
                     /locus_tag="OQQ72_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HCS2010574.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ72_000750"
     CDS             complement(7913..10459)
                     /gene="cyaA"
                     /locus_tag="OQQ72_000750"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HCS2010575.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ72_000751"
     CDS             10846..11787
                     /gene="hemC"
                     /locus_tag="OQQ72_000751"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HCS2010576.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ72_000752"
     CDS             11784..12524
                     /gene="hemD"
                     /locus_tag="OQQ72_000752"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HCS2010577.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCECYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            12546..13781
                     /gene="hemX"
                     /locus_tag="OQQ72_000753"
     CDS             12546..13781
                     /gene="hemX"
                     /locus_tag="OQQ72_000753"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS2010578.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA
                     PAPAPAPQGDTPAAAPQGE"
     gene            13784..14980
                     /gene="hemY"
                     /locus_tag="OQQ72_000754"
     CDS             13784..14980
                     /gene="hemY"
                     /locus_tag="OQQ72_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HCS2010579.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            15658..15819
                     /locus_tag="OQQ72_000755"
     CDS             15658..15819
                     /locus_tag="OQQ72_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000395868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010580.1"
                     /translation="MEFSFSPKLLVVAVAAALPLMASAADTPSTATARKGFAGYDHPN
                     QYPQNAAIY"
     gene            complement(15903..17138)
                     /locus_tag="OQQ72_000756"
     CDS             complement(15903..17138)
                     /locus_tag="OQQ72_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS2010581.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRRAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVRPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(17285..17361)
                     /locus_tag="OQQ72_000757"
     tRNA            complement(17285..17361)
                     /locus_tag="OQQ72_000757"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17325..17327),aa:Pro,seq:tgg)
     gene            complement(17404..17490)
                     /locus_tag="OQQ72_000758"
     tRNA            complement(17404..17490)
                     /locus_tag="OQQ72_000758"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17454..17456),aa:Leu,seq:cag)
     gene            complement(17511..17586)
                     /locus_tag="OQQ72_000759"
     tRNA            complement(17511..17586)
                     /locus_tag="OQQ72_000759"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17551..17553),aa:His,seq:gtg)
     gene            complement(17645..17721)
                     /locus_tag="OQQ72_000760"
     tRNA            complement(17645..17721)
                     /locus_tag="OQQ72_000760"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17685..17687),aa:Arg,seq:ccg)
     gene            complement(17824..19209)
                     /locus_tag="OQQ72_000761"
     CDS             complement(17824..19209)
                     /locus_tag="OQQ72_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2010582.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAVGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(19400..20140)
                     /gene="rffM"
                     /locus_tag="OQQ72_000762"
     CDS             complement(19400..20140)
                     /gene="rffM"
                     /locus_tag="OQQ72_000762"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HCS2010583.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(20143..21495)
                     /gene="wzyE"
                     /locus_tag="OQQ72_000763"
     CDS             complement(20143..21495)
                     /gene="wzyE"
                     /locus_tag="OQQ72_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HCS2010584.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(21492..22571)
                     /gene="rffT"
                     /locus_tag="OQQ72_000764"
                     /gene_synonym="wecF"
     CDS             complement(21492..22571)
                     /gene="rffT"
                     /locus_tag="OQQ72_000764"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HCS2010585.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRVLAIAAGEVA"
     gene            complement(22568..23818)
                     /gene="wzxE"
                     /locus_tag="OQQ72_000765"
     CDS             complement(22568..23818)
                     /gene="wzxE"
                     /locus_tag="OQQ72_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HCS2010586.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(23820..24950)
                     /gene="rffA"
                     /locus_tag="OQQ72_000766"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(23820..24950)
                     /gene="rffA"
                     /locus_tag="OQQ72_000766"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HCS2010587.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(24955..25629)
                     /gene="rffC"
                     /locus_tag="OQQ72_000767"
                     /gene_synonym="wecD"
     CDS             complement(24955..25629)
                     /gene="rffC"
                     /locus_tag="OQQ72_000767"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HCS2010588.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(25607..26488)
                     /gene="rfbA"
                     /locus_tag="OQQ72_000768"
     CDS             complement(25607..26488)
                     /gene="rfbA"
                     /locus_tag="OQQ72_000768"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS2010589.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLVQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDQERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(26507..27574)
                     /gene="rffG"
                     /locus_tag="OQQ72_000769"
     CDS             complement(26507..27574)
                     /gene="rffG"
                     /locus_tag="OQQ72_000769"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS2010590.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWKQVQDGSYQGERLGLKG"
     gene            complement(27574..28836)
                     /gene="wecC"
                     /locus_tag="OQQ72_000770"
     CDS             complement(27574..28836)
                     /gene="wecC"
                     /locus_tag="OQQ72_000770"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HCS2010591.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(28833..29963)
                     /gene="wecB"
                     /locus_tag="OQQ72_000771"
     CDS             complement(28833..29963)
                     /gene="wecB"
                     /locus_tag="OQQ72_000771"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HCS2010592.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELVANYPFIDPNKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(30019..31065)
                     /gene="wzzE"
                     /locus_tag="OQQ72_000772"
     CDS             complement(30019..31065)
                     /gene="wzzE"
                     /locus_tag="OQQ72_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HCS2010593.1"
                     /translation="MTQPMPGKPTEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(31077..32180)
                     /gene="wecA"
                     /locus_tag="OQQ72_000773"
     CDS             complement(31077..32180)
                     /gene="wecA"
                     /locus_tag="OQQ72_000773"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HCS2010594.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMALGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(32420..33679)
                     /gene="rho"
                     /locus_tag="OQQ72_000774"
     CDS             complement(32420..33679)
                     /gene="rho"
                     /locus_tag="OQQ72_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCS2010595.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(33764..33865)
                     /gene="rhoL"
                     /locus_tag="OQQ72_000775"
     CDS             complement(33764..33865)
                     /gene="rhoL"
                     /locus_tag="OQQ72_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide RhoL"
                     /protein_id="HCS2010596.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(34006..34335)
                     /gene="trxA"
                     /locus_tag="OQQ72_000776"
     CDS             complement(34006..34335)
                     /gene="trxA"
                     /locus_tag="OQQ72_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HCS2010597.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            34466..35731
                     /gene="rhlB"
                     /locus_tag="OQQ72_000777"
     CDS             34466..35731
                     /gene="rhlB"
                     /locus_tag="OQQ72_000777"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HCS2010598.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            35865..37349
                     /gene="gppA"
                     /locus_tag="OQQ72_000778"
     CDS             35865..37349
                     /gene="gppA"
                     /locus_tag="OQQ72_000778"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HCS2010599.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(37396..39417)
                     /gene="rep"
                     /locus_tag="OQQ72_000779"
     CDS             complement(37396..39417)
                     /gene="rep"
                     /locus_tag="OQQ72_000779"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HCS2010600.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         9868 a        10809 c        10055 g         9039 t
ORIGIN      
        1 cagaaggtgg cgttaaatct cgcttcaggt gaagggaatt tctttatccg tcctggcggc
       61 gtgttttatg ttgcgggaga taaagtcggc atcattcgtc tggatgcctt taaaaccagt
      121 aaagagattc agtttgcggt gcagtcaggg ccaatgttat tagaaaacgg cgtaattaat
      181 ccacgcattc acccgaatgt tgcctcgcgt aaaattcgta acggtgtagg gattaataaa
      241 caagggaacg ccgtgttttt gttgagccag caggcgacaa atttttatga ttttgcctgt
      301 tatgccaaag cgaaactgaa cgttgagcag ttgctttatc ttgatggcac aatttcacat
      361 atgtatatga aaggcggggc aatcccgtgg caacgctatc cttttgtcac catgatttcc
      421 gtcgagcgga aaggttaagc attgtacact cgaggaggcc agacaaactg ggactggcta
      481 cacagctgga aaatcatcag ataaatgaag ggaaacaaaa atgaaaaaaa cgctcgcaac
      541 gttattttta ttaacgtgtc tgggatcatc atccgcctat gcggataacg ctttgatttt
      601 acaaactgat tttagcctga aagatggtgc cgtctcggcg atgaaagggg tcgcattcgg
      661 cgttgaccat aatcttaaaa tctttgattt aacacacgaa attccaccgt ataacatctg
      721 ggaaggcgct tatcgcctgt atcagactgc cagttactgg ccgcaaggtt cggtgtttgt
      781 tagcgtggtc gatccgggcg taggcactga ccgtaaatcg gtagtgctga aaaccaaaag
      841 cggtcaatac ttcgtttcac cagataacgg tacgctcact ttggtggcac aaactctggg
      901 tattgatagc gtccgggaaa tcgacgaaaa agctaaccgc ctgaaaggtt ctgaaaagtc
      961 atataccttc cacggtcgtg acgtgtatgc ctacaccggt gcacgtctgg cttccggggc
     1021 gattacgttc gaacaggtgg ggccagagct tccagcaaaa gttgtcgaac tttcttatca
     1081 gaaagcaaaa gcaacaaaag gtgaagtgaa gggcaatatc ccgattctcg atattcagta
     1141 cggcaacgtc tggagcaata tcagcgacga gttgctgaat caggcagaaa tcaaactcaa
     1201 cgacacgttg tgtgtgacca tttccgaagg ttcccagcaa aaatacgcag ggaaaatgcc
     1261 gtatgtcgca agcttcggcg atgtgccgga aggccagccg atggtgtatc tgaacagctt
     1321 attgaatgtt tccgtggcgc tgaatatgga taatttcgcg cagaaacatc aggttgcgtc
     1381 tggtgctgac tggaatattg atgtgaagaa gtgcgctaag taaggtgctg atgcggaatg
     1441 cggtgtggcg caccgcatcc cgcaacgtca caccgtctcc aaccgggcat aagccgccac
     1501 cagccattta ataccctggc cctggaatgc cacctgcaaa cggctatgtt caccgctgcc
     1561 ttccatattg acgatggtgc cttcaccaaa cttagcgtgg cgtacacgct ggccgagctt
     1621 gtagccgctg tcgttctcga ccatcggcgt acccatccgc tgatggctga ccgggcggct
     1681 taccgtggcg cgcaggcgca cctcttccac acactcttcc ggcagctcgc caataaagcg
     1741 cgacgggcga tggtaaacct ctttgccata cagacggcga gtttccgcgt aggtcagcgt
     1801 cagtttctgc atcgcgcggg ttacgccaac gtaggccaga cggcgttctt cttccagacg
     1861 cccgccttca tccagcgaca tctggcttgg gaacatgccc tcttccatac cgacgataaa
     1921 cacctgcggg aactccagac ctttcgccga gtgcatggtc atcagttgta ccgcatcctg
     1981 ccaggtatcc gcctgccctt cgcctgcttc cagcgccgca tgggatagga acgcctgcag
     2041 cggcattaaa tcttcgtctt cttcgttgta gctgaactgg cgcgttgccg tcaccagttc
     2101 ctctaagttt tcgatacgcg tctgaccttt ttcgcccttc tcctgctcgt acatggtacg
     2161 caggccggag tctttaatta cccggtcagt ctgtacatgc agcggcatat cggcagtttc
     2221 ctgcgctaag gcgtcgatca gttccataaa ccgctgtaag gcgctggcag cacgtccggc
     2281 gagggctttt tcctgcaaca gttcacgaca tgcctgccag agtgttaact ggcgatcgcg
     2341 cgatgtctga cgtaccacgt ccagcgtccg gtcaccaata ccccgcgttg gcgtattcac
     2401 cacacgctca aaggccgcgt cgtcgttacg gttggcaatc aggcgcagat acgagagcgc
     2461 atctttgatt tcctggcgtt cgaagaagcg catcccgccg taaatacggt acggcatact
     2521 cgcctgcaac agtgcttctt ccagcacacg cgactgggcg ttactgcggt agagaatggc
     2581 gcactcggca agcgccccgc cgttgtcctg ccaggttttg atgcggttaa ccacaaaacg
     2641 cgcttcatcg agttcgttaa aagcgcaata gagggaaata ggctcaccgt ccgcgccatc
     2701 ggtccacagt tttttaccca gacgcccgtt attgttttca atcagggcgt tagcggcgct
     2761 cagaatattg ctggtagagc ggtagttttg ctccagacga atagtttcgg caccggggaa
     2821 atcattaagg aaacgctgaa tattctccac ctgcgccccg cgccagccgt agattgactg
     2881 gtcgtcatca ccgacgatca tcactttgcc ggtgtcgccc gccagcaggc ggatccacgc
     2941 gtactgaatg ttgttggtat cctggaattc gtccaccagg atattggtaa aacgttcgcg
     3001 gtagtgttgc aggatatgcg gcttgttaag ccacaactcg tgagcgcgca gcagcagctc
     3061 ggcgaagtcc accaggcccg cgcggtcaca cgcttcctga tacgcctgat acaccttctg
     3121 ccaggtctgc tccaccggat taccgtagct ttgaatatga tgtggacgca ggccttcatc
     3181 tttctggctg ttgatgtacc acattgcctg gcgcggcggc cactgcttct cgtcgaggtt
     3241 catcgccttg attaggcgtt tgagcaggcg tagctggtcc tcgctgtcga ggatctgaaa
     3301 atcctgcggc agattggcgt ccatatggtg cgcacgcagc agacggtgcg ccagcccgtg
     3361 gaaggtgccg acccacatgc cgccctggct ggtgcccatt agctgcccga tacgatgacg
     3421 catctccgcc gccgctttgt tggtaaacgt caccgccata atcgagtatg gcaagcagtt
     3481 ttccacgctc atcagccagg cgatacgatg caccagtacg cgcgtcttac cactgcccgc
     3541 gcccgccagc accagaaggt tgctgcgtgg cgcggccacc gcttcgcgct gtttgtcatt
     3601 aaggctgtcg agcaggtaag aaacgtccat tggcaccgcc gcgtaaaaat aggttgggcg
     3661 gagaagcgca acgccctccg ccaaaaagct gggtatatat acagatttgc tgattatatc
     3721 agcgaggtca gagatgccaa ccgggaaatt tccagatgcg gcagtaaacg gctgtcccag
     3781 gtttgcatca gatcgccatt ttccggtctg atccaacagg cctgcattcc gctgcgaatt
     3841 gccccaccca cgtcagtggt gagatcgtcc ccaacatgta agatctcgcc gatcggcacg
     3901 ttgagttttt ccgcagccag aaagtacata tcgctgaacg gttttgagcg cccgtgcggg
     3961 ccagcgcgca gcacaaactc aaaataatcc cccaaaccaa acagttccgg ctgggcgtta
     4021 ccgttggtga tcgccaccag cggccatttc ttcgccagct gttttaaggt gtcgtgagtt
     4081 tgctgcggga cgtcgattcg gctgcgccat ttggcaaagt tgatcattgc tgcgtgtgcg
     4141 cctgcactgg cttcttcggc actcagcccg gcgtcgagca tcgcttgttc aatcgaacga
     4201 aaacgccagc gcgtcacgtc gtgataaatc tcgggttccg cttcccgtac cgcctggcgc
     4261 aggcgttgca gatcttcatt ctggaagctg cgcagcgccg gatgataatt ttgcacaaag
     4321 gtaagcgcct ctcgctcggt gcgcaaaatc accggacggt tatcgtaaag ggtatcatcc
     4381 aggtcaaagg tgagcgccga gatgcgcccc aaaggccggt aaaaacgcat tatttccccc
     4441 gtttggcgcg tggatgcgcc gcatcgtaca ccgaggcaag gtgttgaaaa tcaagatgag
     4501 tatagatttg cgtggtggag aggttggcat gacccagtag ctcctgcaca ccacgaagat
     4561 cgccgctcga ctccagcata tgcgtagcga acgagtgacg taatttatgt gggtgaacgt
     4621 gattattcag cccttgtttt atgccccatt cggcaaagcg tttctgcaca ttacgcgcgg
     4681 agatacgctt gcccagtttc gacagaaaaa gcgcgtcgtc ttcgctacca aacaggtcgc
     4741 gcaaatcaag ccagtgctca atccacgcca cagcgttgcg accaatcggc aggcggcgct
     4801 ctttgctgcc tttccccatt acccacactt caccagactc caggtcgagg tgtttgatat
     4861 ccagccccac cagctcggaa agacgcagac cagcgccgta catcacttcc agcattgcac
     4921 ggtcgcgtac agcgagggga tcgttgatat caatatccag cagccgattc atatcgtcga
     4981 cgtcgatatt tttcggcaga tgacgcggcg ctttcggtgc cgaaacacct ttcgccgggt
     5041 tagctttgag ttcgttctgg ctgaccagcc agtcaaaaaa gctacgtagc gcagaaagcc
     5101 gtaacgccag acttgctgct cccagccctt tacggcgact gcgtacagca aaattgcgca
     5161 ccatcgtcac atcacattgc tgccagcttt gcaggccgtt ttcgctggca aaattgatga
     5221 tcgcctcaag ctgacgctgg tagttaagca gggttatcgg gctaagctgg cgctccacgc
     5281 tcagataacg taggtagcgt tctacatcgg tgtgtaaatc ggtcatacgc gttcaatcca
     5341 acgctccaga agctccggca acatcagcgc aatttcatga agtaactgcg ttccttgccc
     5401 ttgttgatag tgactggcat cgcgactggt aaacagcacg acacccaaat cagcatcgct
     5461 tcccagcatc gacatcgcca ccgatcccac cgctttcgct tccggtagca ccaccagcag
     5521 ctctggtccg ttaagcggcc caagatagtg ctgttcctgc cccaaacgct gaatacgcag
     5581 cggttcgaaa gactgacggc ttaatgccag atgagtgtgg ttcgacggcg cacctaagcg
     5641 ccagcgatcc ggaaacaggc gcagactcgc acctgccagg ccgagatcgc gcgcccagcg
     5701 gtgaaagcgc atcagcatat cgtcgagact gctggcggcg gtgagactgc gctgcaggta
     5761 gagtaggcga taaaacaggc cttcgttggc gatagcctgt tccatcaaca gcgccatgtt
     5821 ctcttccaga acatgaatat gattacgtgc gcgggccatg tgccactcga ccaacgaaac
     5881 ggtgccgcgt accggatgtg gcacacgtat cgcttctact gcgcgcgcat tacggataaa
     5941 aaactcagga tttttaatca gataatcgac aaccgcccgg tcatcaagct ccgtgagtgt
     6001 ttcctgcagt tcttcccctg gttgcttcat agatgaataa atccgtcgta gacatgtacc
     6061 gccgggccag tcatatataa cgggtgaccc ggacctttcc aggcgatatc aagacgaccg
     6121 ccggggagtt ccacgcgtac ttcttcggcc agcaaacctt gctgaatccc tactgcaacc
     6181 gccgcacacg cgccgctgcc gcaggcctgg gtttctcctg ccccacgctc ataaacgcgt
     6241 aaacgaatat gctcgcgctt aaccacttgc ataaaaccga tattggcgcg ctccggaaaa
     6301 cgctcgtggc tttccagaac aggaccaagc gtttctaccg ccgcggtatc gacatcatcg
     6361 acctgaatca cgcaatgcgg atttcccatc gacaccacgc cgcataagat tgtctgctcg
     6421 gcggcgcgca taatataggt cttttccgct ttgttagcgc gaaacggcac agcggaaggt
     6481 tcgaagttgg gttcgcccat atttacgcgg accagatcat catcggtgac ggtcagaacc
     6541 atccgcccgt tggcggtgct gacgcggata tcgcgcttat tggtcagccc tttcaggcgc
     6601 acaaaacggg caaagcagcg cgcaccgttg ccgcactgcg ccacttcact gccatcagca
     6661 ttgaaaatgc gatagtgaaa atccagttca ggatcatacg gcggctcaac caccagcagc
     6721 tggtcaaacc ctacccccag gtgccgatcc gccagccgac gaatcagctc cggtgaaaaa
     6781 aagacattct gcgttaccgc gtcgacgacc ataaaatcgt tgccaaggcc atgcattttc
     6841 gagaactgca tcatttactc caatcacgcg ggtacagaaa ctgactttta gtaattcacc
     6901 tgggatggac catcccagtg gcgcgatcgt ttttatccgg caccgtggat tgcgtttgcg
     6961 tctctaccgg tttggtcggc ggcggtgcat ttttatctgc aggcgggaaa tagagcggac
     7021 ctttcagacc gcagcccgtc aggctgaaga gagtaagtaa tacagtgagt accttaaaca
     7081 cgtttttcat tatggattgc ctgtaaagtt catcgctttc tgctttctat catcgcagga
     7141 gaaggcgtaa aagcaagcgt ttagcgactc tttatgaagt ctgaaaagtg aggaaatgct
     7201 gcgagtataa cgcttactcg tgaggattta tgttctgctg gcagtttcgt gatcggcacc
     7261 tcgcgccagg atggctttat gcactatcgc aatgtggttt gtttgttggc ttttttagtt
     7321 ccgtcagcgt gaggatgctc gctcggtaaa cctgatcata atgtttacca gaaacaggga
     7381 aaggcgtggt gtaactgcgc cctaatgaag agacaaatct ttcgccacac agagacatca
     7441 ttattccggt gacggatgaa tcatgccgga acgcagcagc agaggtgcaa actttgaagc
     7501 cctgacccca tgccgctata ctgccgccat cacttaaaaa caggatacaa caatgaacga
     7561 cagtgaattt catcgcctgg ctgatcaact gtggctgacc attgaagagc atctggacga
     7621 ctgggatggc gacagcgata tcgactgcga aatcaacggc ggcgtgctga ccattacctt
     7681 tgaaaacggc agcaaaatca ttatcaaccg ccaggaaccg ctgcaccagg tatggctggc
     7741 aaccaaacaa ggcggctacc attttgatct gaaaggcgat gagtggattt gcgatcgcag
     7801 cggcgaaacc ttctgggatt tgctggaaca ggcggcgacg cagcaggcag gtgaaacagt
     7861 cagtttccgc taagattgca tgccggataa gcctcgcttt ccggcacgtt catcacgaaa
     7921 aatattgctg taatagcggc gtatcgtgat cctgattggc aggcggcatg ttaccgatag
     7981 attttgtgcg gaacggaatc acctgttcac gaccatcaac cttcacaatc tgatagaact
     8041 gcggcaggtt gaagttgatg aagcttgagc cgtaggtgaa gcggtcgtgc gatgacgagt
     8101 agaagcgact gacgtcacgc accagttcct ctttgctgcc ttcgcagtgg tgatacacct
     8161 caacccggtt gctttcgtca agaatgtaga tattaaagcc attctcgtct tgcgtttctt
     8221 cgaagaagaa ctggatgatc ccttcactag caaagccgtc caccaccgcc ggtaatttga
     8281 cgtgattggt ttcaacctgc actgacaggc cgtgcagttt gttatgcgaa atagcgccat
     8341 aaaactcgat ggcgttctcc agcttctgta ccgatacatt caggcgttcg aagaacaagc
     8401 cccaggtttg accagaaacg cgcagcgcct tgaaacgccc ggtttcctgg cgggtgctgg
     8461 aaaggcgcag ttcaatacac tcagaaacca gttgctgcac gcgagtacgg attaacccgc
     8521 gcagatgctg gctataacag aagacttcca cgctatctgg cggtgcggcg tcctgatgca
     8581 ttttgccgag aatagttttc agggcttcga tcatcgattg ctcgccgttg aagtgcagcg
     8641 tacgcacttc gttccacgag ttgcggtaca gcaggtcaac gctacctacc aggcaatttt
     8701 gattctcgcc aaagctgaag acatccagct tacggaaatc aaaatgcacc acctgattgc
     8761 ggaacgccgc tgtcgggtca tattccaggt taacgataat cgccagatgg cggatctcac
     8821 acgggctgta gagcgccttc ggtgtcggtg caggtaagcg cagcgggaaa tggtgcgaca
     8881 cgtcggcgac catctcctgc aacttaggca aatcgacaat gccgttacct ttaatataca
     8941 aacgggtgcg cgaggtcagc aggccgttaa accatgccca cgccaccagt ttgttcaggt
     9001 aacggttata ttccagcggc tgatggctga tgatcgactc aatatttggc gcgcggttat
     9061 acagatacca acctgaacgg ttagcacggc ccggcggcac ataaataaag gtcagattcg
     9121 gttccgagag atcgggtgaa atctgcgggt ttaccagcgt cactttacct ggtaatgctt
     9181 caaacgcggc atacagctta cgcgtcagca cgccgatatc ctgcggactg gcggagacgc
     9241 taaggttatt gcgacgcgca aagcggatca gattacggta gctctgcatc atcgcgtcga
     9301 gcaactcgtt gtgcgcctca cgcacctgat caatcttcca gttagcgcgg ttatcgagca
     9361 ttgccagacg agcttcgtcc caaccccact cgctcactaa ctggctcaac actgcgcgac
     9421 gccagcctac gcaggcgcgt tcacggctga gcttttcgca cacttttaaa tagaagcagc
     9481 gacgtactaa atccagacgg gtaaaatctt caatcgccgt caggtattca gtaacacgct
     9541 ccagcatcat gcagtatgga tcgagaccaa acgatacaat ctcaccgtcg tgcaaacgct
     9601 gtttgatatc tttcgccagc agacgtgggt tcgggtattc ccaggaatag gcttccagca
     9661 gcagtgtttt cagtaccgct ttgtatgggg aatcgatact cttgtagagc tgccaaaggc
     9721 tggcaccaaa gtactcttca gcagaaagcg agcttaagcc accgagatcc agccattcat
     9781 ttggcgtcag cacgccctgc gcgtaaagcg tcatcacata gtcgtcgtaa tgctcttctt
     9841 cgtcgcacgg caccatattc cacagaatac gcttaccggc gagacgcacg gcggtacgat
     9901 aaaattcgtc aagcagcagt atatgctggg tggagccaca atcttcgccc cccaagctgc
     9961 cgctttcatt atgacggaag cggttttcat caatcaggaa gaagctgact tccacaccca
    10021 gcgaggcggc ccagctttcc agcagactac atttacgttg tagtaactgg cgctcttcgc
    10081 tatcgagcca ggattgatga cagacccaga tatccaggtc agaggaacaa ctttgcccta
    10141 cggacgaggt gctgcccatg gtgtatacac cagtaattgg aagctcacct ttcggtggat
    10201 cctgtactga cattccacga tacagttcaa gctcgttcag gtagtggcgt tgagtttcat
    10261 caggcgtgta aaggcaaatg cctttgggaa cgttaccatc aaggtaaccc ggcattagcg
    10321 gatggtgata gtgcaacaat gtcggcagta gactgtagac ctgttggaat gcaggcccca
    10381 tagcagcaag cgcgcgatcc acacgcaatt gatttatggc atccagtctc tgtttcagag
    10441 tctcaatata gaggtacaag acgtatcgcc tgatttgcta cccgtcatga ctgtgattcc
    10501 gccaacatca acggtaacac gcggcattcg ggatatttcg tatgtcaaag gtaaccgtta
    10561 ccacttttcg cgcctggttt ttttagtttc acgacgaaaa aatggtctaa aacgtgatca
    10621 atttaacacc ttgctgattg accgtaaaga aagatgcgct acatacaagt gtagcaccgt
    10681 ttattctctg taaattcctt attacgacgg cgtgaaacgc ctgtcaggat ccactgccag
    10741 acctcatttt acggtttgcg caggcgtcta cgtttcacca caacactgac atcactctgg
    10801 caaggatgtt aggatggacc acggatgata atgacggtaa caagcatgtt agacaatgtt
    10861 ttaagaattg ccacacgcca aagcccactt gcactctggc aggcacacta tgtcaaagac
    10921 aagttgatgg cgagccatcc gggcctggtc gttgaactgg taccgatggt gacgcgcggc
    10981 gatgtgattc ttgatacgcc gctggcgaaa gtaggcggaa aaggcttatt tgtaaaagag
    11041 ctggaagtcg cgctcctcga aaatcgcgcc gatatcgccg tacattcaat gaaagatgtg
    11101 ccggttgaat tcccgcaagg tctgggactg gtcactattt gtgagcgtga agatcctcgc
    11161 gatgcctttg tgtccaataa ctatgacagt ctggatgcgt taccagcagg cagtatcgtc
    11221 gggacgtcca gtttacgtcg ccagtgccaa ctggctgaac gccgcccgga tctgattatc
    11281 cgctccctgc gcggcaacgt cggcactcgc ctgagcaaac tagataacgg cgaatacgat
    11341 gccatcattc ttgccgtagc cggactaaaa cgtttaggtc tggagtcccg cattcgcgcc
    11401 gcgttaccac ccgagatttc tcttccagcg gtaggacaag gtgcggtcgg tattgaatgc
    11461 cgccttgatg atgcacgcac tcgcgagctg cttgccgcgc tgaatcacca cgaaactgca
    11521 ctgcgcgtta ccgcagaacg cgccatgaat acccgtctcg aaggcggatg tcaggtgcca
    11581 attggtagct acgccgagct tattgatggt gaaatctggc tgcgtgcgct ggtcggcgcg
    11641 ccggacggtt cgcagattat tcgcggtgaa cgccgcggtg cgccgcaaga tgccgaacaa
    11701 atggggattt cgctggcaga agagctactg aataacggcg cgcgcgagat cctcgctgaa
    11761 gtctataacg gagacgcccc ggcatgagta tcctggtcac ccgcccgtct cccgctggag
    11821 aagagttagt gagccgtctg cgcacactgg ggcaggtggc ctggcatttt ccgctgattg
    11881 agttttctcc gggtcgacaa ttaccgcaac ttgctgatca actggcggcg ctgggggaga
    11941 gcgatctgtt gtttgccctc tcgcaacacg cggttgcttt tgcccaatca cagctgcatc
    12001 agcaagatcg taaatggccc cgactacctg attatttcgc cattggacgc accaccgcac
    12061 tggcgctaca taccgtaagc ggacagaaga ttctctaccc gcaggatcgg gaaatcagcg
    12121 aagtcttgct acaattacct gaattacaaa atattgcggg caaacgtgcg ctgatattac
    12181 gtggcaatgg cggtcgtgag ctaattgggg ataccctgac agcgcgcggt gctgaggtca
    12241 ctttttgtga atgttatcaa cgatgcgcaa tccattacga tggtgcagaa gaagcgatgc
    12301 gctggcaatc ccgcgaggtg acgatggtcg ttgttaccag cggtgaaatg ttgcagcaac
    12361 tctggtcgct gatcccacaa tggtatcgtg agcactggtt actacgctgt cgactattgg
    12421 tcgtcagtga gcgtttggcg aaactcgccc gggaactggg ctggcaagac attaaggtcg
    12481 ccgataacgc tgacaacgat gcgcttttac gggcattaca ataactctca taacaggaag
    12541 ccataatgac ggaacaagaa aaaacctccg ccgtggttga agagaccagg gaggccgtgg
    12601 acaccacgtc acaacctgtc gcaacagaaa aaaagagtaa gaacaatacc gcattgattc
    12661 tcagcgcggt ggctatcgct attgctctgg cggcgggcgt cggtttgtat ggctggggta
    12721 aacaacaggc cgtcaatcag accgccacca gcgatgccct ggctaaccaa ctgacggcat
    12781 tgcaaaaagc ccaggagagc caaaaagccg agctggaagg cattattaag caacaagctg
    12841 cacagcttaa gcaggcgaat cgtcagcaag aaacgctggc aaaacagttg gatgaagtcc
    12901 aacaaaaggt cgccaccatt tccggcagcg atgctaaaac ctggctgctg gctcaggccg
    12961 attttctggt gaaactcgcc ggacggaagc tgtggagcga tcaggacgtc acgaccgctg
    13021 cagcgttgct gaaaagtgca gatgccagcc tggcggatat gaatgacccg agtctgatta
    13081 ccgttcgtcg ggcaattacc gatgatatcg ccagcctttc tgcagtttcg caggtggatt
    13141 atgacggcat catccttaag cttaatcagc tttcaaatca ggtagataac ctgcgtctgg
    13201 ccgataatga cagcgatggt tcgccgatgg attccgatgg tgaagagctt tccagttcca
    13261 tcagcgaatg gcgtatcaat ctgcaaaaaa gctggcagaa ctttatggac aacttcatta
    13321 cgattcgccg tcgtgatgac accgccgtac cgctgttagc gccaaatcag gatatctatc
    13381 tgcgcgaaaa tattcgctct cgcctgctgg tcgcagcaca agctgtaccg cgtcaccagg
    13441 aagagactta tcgccaggcg ctggagaacg tctccacctg ggtacgtgct tactacgata
    13501 ctgatgatgc caccaccaaa gcgttcctcg acgaggtgga ccagttaagc cagcaaaata
    13561 tctcgatgga tcttccggaa accctgcaaa gccaggcgat gctggaaaaa ctgatgcaga
    13621 ctcgcgtgcg taacctgctg gcacaaccgg cagcagggac aacggaagct aaacctgcac
    13681 ctgcacctgc acctgcacct gcacctgcac ctgcacctgc acctgcacct gcacctgcac
    13741 cgcaaggtga tactccggca gccgcgccgc aaggagaata accatgctaa aagtgttatt
    13801 actctttgtt ttgctgattg cggggatagt ggttggcccg atgattgccg gtcatcaggg
    13861 ttatgtgctg atccagaccg acaactacaa tatcgaaacc agcgtcacgg gcctggcgat
    13921 catattgatt ctggcgatgg tagtgctgtt tgccattgag tggctactgc ggcggatctt
    13981 ccgcactggc gcgcacaccc gtgggtggtt tgtcgggcgt aagcgtcgcc gtgcacgtaa
    14041 gcagaccgaa caggcgctgc tgaaactggc ggaaggcgat tatcagcaag ttgaaaagct
    14101 gatggcgaaa aatgccgatc acgctgaaca accggtggtg aactatctac tggctgccga
    14161 agccgcgcaa caacgtggtg atgaagcgcg cgccaaccaa catctggaac gcgcagcgga
    14221 gctggccggc aatgacacca ttccggtaga aatcacccgt gtacgtctgc aactggcccg
    14281 taatgaaaac catgctgcac gccacggcgt ggataagctg ctggaagtta cgccacgcca
    14341 tccggaagta ttacgtctgg cggaacaggc gtatatccgc acaggtgcat ggagttctct
    14401 gctggatatc atcccatcaa tggcgaaagc ccatgttggt gatgaagaac atcgtgcaat
    14461 gctggaacaa caggcatgga ttggcctgat ggatcaggcg cgtgccgata acggtagtga
    14521 aggtttgcgt aactggtgga aaaaccaaag ccggaaaacg cgtcatcaag tagcgttgca
    14581 ggtggcaatg gcggaacatc ttattgaatg tgacgatcat gatactgccc agcaaattat
    14641 catcgatggc ctgaaacgcc agtacgacga tcgcctactg ctgccgattc ctcgactgaa
    14701 aaccaacaat ccggaacagc tggaaaaagt gctgcgccag cagatcaaaa acgtcggcga
    14761 tcgcccgctg ttgtggagca cactgggcca gtcactgatg aagcacggag aatggcagga
    14821 agcatcgctc gccttccgcg cagcgctgaa acaacgtccg gacgcctacg attacgcatg
    14881 gcttgccgac gcgctggaca gactgcacaa gccggaagaa gctgcagcga tgcgtcgcga
    14941 cggtttgatg ttaacgttgc agaacaaccc accacagtag ttccttctca cccggaggca
    15001 agcacctccg ggacctttct gatgcataaa aaaacgcctg ctcttattac ggagcaggcg
    15061 ttaaaacagg tctgtatgac aacaagtggg tgcttcactc aacgttgtgt ccatggtgtc
    15121 tgatgaggca taagcgacat ctgtcagtgg acgataagca ccgtaaacgg ctctgcgtca
    15181 ttccggagtt tatgaggcac taaggcgaac ataagagatg gaatgagcat ctactcgttt
    15241 attatgccac agagaatcgg gaaataacat cccttaacac ttgttatgag ataattctgt
    15301 aatcctcttt gcttcctgag taataacttc ctgagtgaat atttaacctg agcttgatcc
    15361 tacacatact tattatgaat gataaaattc attcaattaa taacacatat attaattgcc
    15421 gttaaaacta aaaaagcatc aataatcaac gcgatataat aaacctgcct tacatatcaa
    15481 ctgcgccaga ggtaggattg aaaacgctct cctgattttc caattcattt tctggataaa
    15541 taaataattt atttttgtca ctattattta tgtaatcatc ctgtcaggga gagggatctc
    15601 aattatcaat gcttaattac gtcatcattt tgatgacatg aaaccggagc attttgcatg
    15661 gaattttcgt tttcacccaa acttcttgtt gttgctgtcg ccgccgctct tcctctcatg
    15721 gccagcgcag cagatacccc gtcaactgcc accgcacgca aaggctttgc cggatacgat
    15781 cacccaaacc agtatccaca gaacgctgca atttattgaa tttgcacgat catgtaggcc
    15841 ggataaggcg tttacgccgc atccggcaat caaccgcagg cggccacaaa atggccgcta
    15901 ttttacttat tcaccaccag caaatgtgcc tgcataatgt cactggccgg gcgaccgtgc
    15961 gccagcaaat cagccattgc tttaagatat ggcggtagat ggcggaaata acgctgatac
    16021 ccggcacaca aataattcag ccccggtttg ccgctggcat cgagcatgaa gcggtgtttc
    16081 gggcagcctc cccagcacgc ttttaacacg ttacaactgc gacactgcgc cggtaattgc
    16141 ttaaatttat cttcaccaaa cacctgctgt tgcggggaat cgatcatttc tgcaattgtt
    16201 tgctgatgca tattccccag ccgatattgc ggataaacat agtgatcgca ggcgtaaacg
    16261 tcgccgttgt gctcaacaat caccgagcgc ccacaggttg gctgatgatg gcaaaccgca
    16321 cccggcgcac cgacaaaatt ggcaaacgcc cattcgatat tcatcacgaa aatcttgccg
    16381 acgtcgcgtt tgatccagtg gtcaaaaatc gccaccagaa attcaccaaa ttcatcgggg
    16441 cgcacagacc attccgtcag ttccccctga atatcaccag gcgcatgtag tttcagtcca
    16501 tcgctggcag ctgtttcatc agccaggcgc tcgaccaccg gaataaactg gatgaattcg
    16561 actcccgcat cgcacaaaaa atcataaacc tgcaacggtt gctgcgcgct ggtgcggttg
    16621 acgcagacca gcacgttata gtcgacatga tgtttttgca gcagcgtcag ggcacgcatc
    16681 accagcttat gcgttggtct gccacctttg gtcacgcgat attgattgtg gatctcagcc
    16741 ggaccgtcca gcgataaccc aacaagaaaa tgattttctg ccagaaatgc acaccattta
    16801 tcatcgagca gcacgccgtt agtctggaag ctgttactta tcttcctgcc agcaccgtat
    16861 ttcgcctgta actttacggc acggcggtaa aaatccagcc cgagtaacgt tggttcgccg
    16921 ccctgccagg taaaagccac ttcgttttgc ggttcgctgg cagcgatata gtgacggaca
    16981 tacgcttcca gcgtgtcatc gtccatatgc gtgactggct tttcgcggta aagggattgt
    17041 ttttcgagat aaaaacagta gtcacagttc agattacaat cggaaccact cggtttcgcc
    17101 atcacatgaa aagcacgcgt tggaacctgt tgcagcatgg tcactccttg cctgaagtca
    17161 tccttcaata cgttaagggc gaaatcatac cgtggggcaa tgagttatta cgggcgttta
    17221 ttgcgaagag agggtgacga aatgcacaga aaacaaaaaa ccccgccgaa gcggggttca
    17281 aaattggtcg gcgagagagg attcgaacct ccgacccact ggtcccaaac cagttgcgct
    17341 accaagctgc gctactcgcc gaaatactgc tttttgaatt tttagttcaa ttatttaaag
    17401 tcgtggtgcg agggggggga cttgaacccc cacgtccgta aggacactaa cacctgaagc
    17461 tagcgcgtct accaattccg ccaccttcgc attgtcacaa cttctaataa tggggtggct
    17521 aatgggattc gaacccacga caactggaat cacaatccag ggctctacca actgagctat
    17581 agccaccact acaaatcttg ttacgcggta ttactaccac cgcagctcaa gcgccgggac
    17641 taaatggcgc gcccgacagg attcgaacct gagacctctg cctccggagg gcagcgctct
    17701 atccagctga gctacgggcg cttagcgccg ttgcgggggt ggataatacg gacttcccac
    17761 ccctctgtct agtccctttt taaataaatt gcgcgtttgg ttacggtttg tgcgttttgc
    17821 tgcttattcc tccagtttat gcgctttccc gtggcgatta aggccaaaaa ctttataaat
    17881 cgccgtcacc gccagcataa agatgatgcc aacaaacagc gacatacgcg tatcttcatt
    17941 aaagtacatg ccgatcaaaa cgcaaatcag gaatgccatt gttacgtagt tggcccacgg
    18001 gaacaggatt gagcggaacg gatggctggc aatcgccgct ttatgtgcac gccgaaaacg
    18061 cagctggctt atcaatatca caaaccatgg caccatcccc ggaagcacgc tggcactgta
    18121 gacgtagaca aacacacgct gcggattggg aatgatgtag ttcaggcatg agccaattag
    18181 cagaatagca atagatactg ccacacccgc aactggtacg ccgtgacggg aaactttcgc
    18241 catcgccgcc ggtaactgac ggtttttcgc cagtgcgtag agcatacgtc cgcaactgta
    18301 catgccgctg ttacagccag agagcgcagc cgtcagcacc acaaagttga taatgcccgc
    18361 cgctgcggta ataccgattt tggcaaaagt cagtacgaac gggctgccgt tgctgccact
    18421 ttcattccac gggaagatgg tgacgataac gaaaatcgcg cctacgtaga aaatcaggat
    18481 ccgccacagc actttgccta cggcactgcg caacgtcacc tgcggattct tcgcttcacc
    18541 ggcagtaatg ccaatcagct ccacgccctg gtaggacgcc accacaatac acagcgcggt
    18601 caggaaccct ttccagccac ccgcaaagaa accgccatgc tctgtgagat tgctaaaacc
    18661 aatcgactgc ccgccattgc caaagccaaa gaaaatcacg cccaggccaa tgacaatcat
    18721 cacgataatc gtggtgactt tgatcatcgc gaaccagaac tcgatttcgc cgtacaaccg
    18781 caccgccgcc agattcgcca acgccaccag cgccactgcg atcaatgcgg gtatccactg
    18841 cgccatctcc gggaaccaga actggacata aacgccaacg gcggtgattt ctgagatccc
    18901 caccgccatc cacataaacc aataagacca ggcggtgaga taaccaaaga acgggctcat
    18961 ataacgatgc gcataaacgg cgaacgaacc ggtaaccggt tcgaggaaca acatttcgcc
    19021 cattgaacgc atgatgaaaa agacgaatag cccggcgatg atataggcca acaatacgga
    19081 tggcccggcc catttcaagg tactggcggc ccccataaac aggccgacgc caatggtgcc
    19141 ccccagggcg atgagttcga tatgtcgagc ttccagccca cgctgtagct ctggtttgtt
    19201 atctgccata aatcctcgtg ttgtgtttgc atgctttccg gtgttaccgg ttatcgttat
    19261 gggtacatcg agtgttgcga atgttttcgt aattcaggag aaatggcaaa taaagcatta
    19321 aaaatttgaa tgctttgtgt aataaaaaag cagacaggcg acggagtgac cactccgtcg
    19381 ctttacaaag agaggaaaat cagaggttgc cggtgtagtg ccagcgtaaa taacgcagca
    19441 aacgaagctg acgcttaatg cggctcggct gcgaaagcag gcggtagagc cactccagtc
    19501 ccagcgtttg ccagattttc ggtgcgcgtt ttacgtgacc ggtgaaaaca tcgtaagtcc
    19561 cgccaacgcc catatacagc gcatctggat gcaccagacg gcagtcgcgc atgaagatct
    19621 cctgctttgg cgatcccatc gcaacggtga cgatttgcgc tccgctggca tgaatgcgtt
    19681 caaacagcgc ctgacgctgc tcgggtttaa aataaccatc ctgactgcca acgatattca
    19741 cattccactg gttgcgcagt ttagcttcag tttgcgccag cacttcaggt ttaccgccca
    19801 caagaaatac cggcgtccct tctttgcctg cgcgcgccat cagctcttcc cagagatcgg
    19861 caccggcaac gcgggaaacc tgcgcctgcg ggtacttttt acgtactgaa cgtacaacgc
    19921 tgatgccatc cgcatattta aattcggcag cgttaattaa ctccctgacc tcggcgttat
    19981 cttcaatggt cagcattttt tcagcattaa tggcaaccag cgttccctgc ttaagctgcc
    20041 cgtcagcaaa cagataatcg agggcgtgct gcatatcacg ccaaccaatc aactgtaagc
    20101 cacgcagcgt ataggtcggt gccgtggtgt tgttattcat tgttatcctt caacctgcgt
    20161 ccggagcgat gattttgtac gtttatgaat gagtccggcg ctttcaaaaa gccagtacaa
    20221 cagttttgcg atcatcagac atgcgccgaa gaccacgata aaaaagacta cgcgtgagac
    20281 aaacgaatcc agcccttcac gtgccagcac gatcatattg aagatcgccc caaagcagaa
    20341 actgtgcaat atcgcagcct tatagcgatt aggctcgcgg ttgcccagct catacagcca
    20401 gtcgaaccat ttgatgatca gaccaaccac gatcgccccg agcgggatga acaacgcgcc
    20461 gcccatcacc accagtgagc ctataagcgt aggcgagatc gccagtccgg agtggttatt
    20521 cagcacttcc ctggtaaagt agttggctga gttcagcacc atactcgggc gacccggcca
    20581 cagccaggaa gggataaaga catagaaatc gcggacaatt ggagccaggc cctggaagtc
    20641 gatgttgtcg tagttctgca acagcaacgc cagattctcc cacggcgaga aggtgtcgcg
    20701 agtgagatag agaaacgtat agaacgcttc atcgccgctc acattcattc catagcgttt
    20761 tagcgccagc cagaacatgc ccacaatccc cagcacgccc gccgccgcca gcatccacaa
    20821 cgaaatccag ccgcgaataa tgccaataaa caggaagata gcgaatgcga tgatgatatt
    20881 ggcgcgagtg ccgccgacaa tcatataagt cagcaagcca aaggcgaccg tgctgacgag
    20941 gaaaaacagc cacgctttgc tatcctggcg cagaaagtag accaccagca tcgccgggat
    21001 gaaaaagtaa aagaagcgtt ttaacgccac gccggagact tcactggaga agatctgact
    21061 gtaggagtta agccggaaca gcaaaaagcc gttgtgcatg aagaagatgc cgacgcttac
    21121 cagcgcgatg cccatcagga tcacccacgt aagattggtc tccacgcggt tcatggtaaa
    21181 cagcggacgg cgcggtacat cagcaacgcg tttgcgtagg cgggttttgt aggtgacata
    21241 gtaaaccgcg tagaagcagc ccgcagaaag caacgcctgc aacaagattt ctggcggcgc
    21301 gacaccaaca tcaaagcgaa ataccagcac gctggtcagc gggaagccga agaaaaaggt
    21361 gagcaaaaac agcaatgaaa agaagacatt gaagttaaag cgcacacggc gaaactcaaa
    21421 ccaagtcagc gtggcaataa acagcgtgca gagcagccag accacaaaca ggccactgaa
    21481 ttgcagcaga ctcatgcgac ctccccggcg gcaatcgcca acacccgctg ccagccttgt
    21541 agatagttag ggctaaagaa ggcaatggtg tttttatcca ccgacgccaa ctggcgctgc
    21601 gcttcacgca caatatcctc gttgagatcg tcggtagtaa acagcaccgg caaatgctgt
    21661 tccgtcatat cctgccagaa cggattttcc cggttaagca cacaaggaat gcccgcctga
    21721 atcagtaagc aaagcgtacc aatgccctgc tggcgggcaa aaataaagta accaagatcg
    21781 cactgacgaa gtagcgccag ataggcgtca aattccagtt tttcgctcaa aatttgcaga
    21841 ttttcttcgc tgaataactc cagccccgcc tgacgaactt cctcaatgta cgcttcgtta
    21901 ttaggcggat atcccatcgg caccaccact tttaccgtat cgccaaattg ctgatgaacg
    21961 gcgcgcaagg cagcaatatg gtcattgctg cggtcaccgg agttccccac cagaatggtc
    22021 attttccctt cacgttgccg atcgttcgcc atcgtattga gagaagggtc catccgcgtc
    22081 gggaagtaca gcagttcgcc ccgcaccttt ggatgcgttt tggcaaaaaa gctcaaatca
    22141 ccgcgggtgg caaatacaca gccgactcgc ttttgcgcca ggcgacgtag cgggtaaaaa
    22201 agcttatatc tcaagccact ggaaagctca tacaggtctg ccccccagat atgccagaaa
    22261 aactggctgg gcttaatgcc accactcagc agagccagcc acagtgtggg attgaactga
    22321 ccgtggaaaa aaaatcgctg ctgacggtta gcttttgctt tcgcgatgac cgcttccgcc
    22381 agcgattttt tcccagggaa aaattgcaca gaaagcgccg gacagctatc acttaagccg
    22441 tcgtccttgc caacaaccat aaactcgcgc gcgtgctcgc tcgtcgcggc cagcgcgtca
    22501 ttgaaaaacc gcaaaacggt tcggttatgg tgagggatat ccgatcccag tacgtgaatc
    22561 agtacagtca tgcccgccta cgccagagta aaaacacgcc acaacaaaga gaaaaataga
    22621 cgatataagt tgccatatat gcctgcgccg cgcccagtgc accatgcgca gggattagcc
    22681 agtgggcaaa taccatcaat aaagtgaact ggctgacttc cgccagaata taaaaccgca
    22741 gtgacgcttt ggcgatcacc agataaccaa agacataagc gcccactttt agcacatcac
    22801 ccactaactg ccaggcaaag agatcgcgca tagcggtaaa tttattcgac aacagcaacc
    22861 agatagcaaa atcacgcagc aaccagacgg taaaactcgc cgccgccact gccggtaaga
    22921 cgaattttag cgatttaacc acttcccggg tgatatcgcg cttttccgtt agccgcgaca
    22981 acgtgggcag caaatatacg ctgaacgatg ccgtaatgaa ttgcaggtag gcatcggaaa
    23041 tactgctcac cccttgccag atccccactt catcccagct atactgcgcc gccagcagtt
    23101 tacgcatcat gatgtaagca acaggcaagg tcaccgacgt aatcaacgcc atgagcgtaa
    23161 atttgctcaa ctgccctgcc agaccgttat cccagctggg tttcagatag cttaacggga
    23221 tgacaccacg tttgatcaac atgatggcgg caggaattac caccagcgcg ggaatcagcg
    23281 ccagacccag caacgcccct tcataaccgc ccaaacggta actgacgtag tacgcgagaa
    23341 cgccaatcaa gctgccgaca atcagcgata acgcattacc tgcggcatcg cgaaagcctt
    23401 tcatcagcgc cagtaacagg ttgccccagg cgatccccat ttgcaccagc gccactaaac
    23461 gcaccagccc ctgatagtcg gtattaccaa acaatccctg gctgattggc gcagctgcca
    23521 gcacaaaaac cagcgccatc agcgtagaga aaccaagtac catcgctgat gaagtgccga
    23581 ccacgcggcg cagctgttgc ggattatcat ggtactgggc aacgtatttg gttacaccgt
    23641 taaagatgcc agccccggca agcacgccga gcacggtaat caactggcgg aaatttgccg
    23701 ccagcccaag ccccgccgga ccaaatgaca ccgccagcaa cttaccgacc agtaacccgg
    23761 caccaatctt gaccagtgta ctggccgccg tccacaagga cgcttttgcc aacgacatat
    23821 caggagaagt agttcaacaa agtcgcaatt accgtacgct gattgacggg cgacaggttg
    23881 tagaacagcg gcaggcgcag caggcgctcg ctctctttgg tggtgtagcg atcttcaccg
    23941 tggaactcac caaagtgttc ccccgcaggg caaccgtgca gcggaatgta atgaaacacc
    24001 gccatgattt ccgcttcttt cagaaagtta atcaacgcgc tccggtcatc aatatcccgc
    24061 agtttaatgt agaacatatg cgcgttctgc acgcagccat caggaatcga cggcagctcg
    24121 atacgcccgg ctttcgccag aggcgctaac gcatcgtagt aattttgcca cagcgccaga
    24181 cgttgctggt tgatacgatc cgctgcttcc agttgcgccc acaggtatgc agcttgcaga
    24241 tcggacatca aatagctgga gccaatatcg cgccaggtat atttatcgac ctgaccacgg
    24301 aagaactggc tgcggttagt gcccttttca cggatgatct cggctcgttc gattaacgct
    24361 ttatcgttaa tcagcgtcgc gccgccttca ccacccgccg tgtagttttt ggtttcatgg
    24421 aagctaaagc agccaatatg accaatggtt cccagtgcac gccctttgta agtggacatc
    24481 acgccctgag cggcatcttc caccacaaac aaattatgct ttttcgccaa cgccataatg
    24541 gtgtccattt cgcaggccac acccgcgtaa tggaccggca cgataacgcg cgttttgtcg
    24601 gtgatcgctg cttcaatcaa cgtttcgtcg atgttcatgg tgtccgggcg aacatccaca
    24661 aagacgattt tcgcgccacg cagcacaaag gcattggcgg tggagacaaa ggtgtagctc
    24721 ggcatgatca cttcatcgcc aggctggata tcgagcagca gcgccgccat ctccagcgaa
    24781 gcggtgcagg acggcgtcag taacactttg gcgctgccaa aacgttgctc cagccactgc
    24841 tggcagcgac gggtaaaacc gccatcgcca cacagtttgc cgctacccat tgccgactgc
    24901 atatagtcga gttcggttcc caccaccggc ggtgcgttaa atggaatcat gtgatcacct
    24961 gtataaccag tacgcggtgc tttctacatt cgcaccactt tgtatgtatc gtttaagcgc
    25021 ggcggtgttg cccatttggg tcgccacccg caaagttgtt ttaccgcgag catacgccca
    25081 gtttagcgcc gtttgcatca gctcagcacc tgcaccgcgt ccagccagca ggccaattcg
    25141 cgcatctgtc gcattgagtt cccgtaaaga gacatagccg cgaatatcgc cggacgccgc
    25201 acgtagaatc agacattgat gatcaaaggt gccgcgcacg gcattttcaa tccactgtgc
    25261 ataaaagcga ccgctggcgt caggcgcata ccacggcgca cgaaaacggc tttgcgcaaa
    25321 tgcggcgcta gctaactgac gtaatgcggg aatatcggtc tcttgtgcca cgacagcacc
    25381 gctatcactg acattgttca cgggtagcgc caaatcaact tcaccttcta ccagggagaa
    25441 tcccagctgt tgcagggcat ccagttcacc cgtatttgat gccgcaattt tggcctgcac
    25501 ccgtgaccac ggcgctaacg cgtctggcgt caggagcggt gcttcagacg taatgcgcac
    25561 gatggcgctg ttaacaccaa agaaggcgtt ttcccaggtt agtggctcaa tactggcgcg
    25621 gacgggcacg aagtaactcc agcagatatt ggccgtagcc agttttcgct aatgaactgg
    25681 cagcacgctt cacaccctcg tcatcgagcc agccgttacg ccaggcgatc tcttccaggc
    25741 aggcaatctt aaagccctgg cgtttttcta ctgtctgcac aaaggtactg gcttcaatca
    25801 ggctgtcgtg agtgccagtg tccagccagg caaatccgcg cccgagcagt tcaacggtca
    25861 ggttgcccgc ctcgaggtac atctggttga tggaggtaat ctccagttca ccacgctccg
    25921 acggcttcac ctgctttgcg tactccacga ctttactgtc gtagaaataa agcccggtca
    25981 ccgcccagtt tgacttcggc tgttttggct tttcttccag cgagatagcg cggaaattgt
    26041 cgtcaaactc caccacgcca aagcgttcct ggtccatcac ctgatagcca aataccgtcg
    26101 ccccttccgt gcgcgccgca acatgacgca gcttcggact gaagccctga ccgaagaaga
    26161 tgttatcgcc cagcaccaga caagaaggtt caccgttgag gaaggtttca ccgatgataa
    26221 aggcctgcac cagaccgtcc gggctgggct gttcggcgta ttccagctgg ataccgaact
    26281 cactaccatc gcccagcagg cgctggaaat aacctttatc ttccggcgta gtgatgatga
    26341 gaatttcgcg gataccggcc aacatcagca ccgacagcgg atagtaaatc attggcttat
    26401 cgtaaatcgg caacagttgc ttcgatacgc cgcgcgtaat cggatgcaat cgggtgccgg
    26461 aaccgcccgc caggataata cctttcatgt ttgcctccgc tgaaaattag cctttcagac
    26521 ctaaacgctc gccctgatag ctgccgtcct gcacctgctt ccaccagctt tcattagcca
    26581 gataccactg caccgtttta cgcattccac tttcaaaggt ttcctgtggc agccagccaa
    26641 gttcacgggc aattttcgaa gcatcaatgg cataacgcag atcatgcccc ggacggtcag
    26701 cgacaaaggt gatcaagtca cgatagtgca ccacgccgtg cggcttgttc ggagccagtt
    26761 cttccagcag ctcgcaaatg gtttccacaa catcgagatt cttacgctcg ttgtgaccac
    26821 caatattata ggtttcaccg actttcccgg tggtcgccac gcaatacagc gcgcgggcgt
    26881 gatcttccac atacagccag tcacggattt gctgcccgtt gccatatacc ggcagcggtt
    26941 tacccgccag cgcgttgagg atcatcagcg ggatcagttt ttccggaaag tggtaaggac
    27001 cgtagttatt cgagcagttg gtgataagcg tcggcagacc gtaggtccgc agccaggcgc
    27061 gcaccagatg gtcgctgctg gcttttgacg cggaataagg gctgctcggc gcatacggcg
    27121 tggtttcggt gaagaaatca tccgtcgagt gcaggtcacc atatacttcg tcggtggaga
    27181 tatgatgaaa acggaacgct gattttttat cttccgtcag cgtattccag taagcccgcg
    27241 ccgcttcaag caatgtataa gtcccgacaa tgttggtttc aataaacgct gccgggccgt
    27301 caatagaacg gtcaacatgg ctttcggctg ccagatgcat gacacagtct ggctgatgct
    27361 cagtgaatac gcgtgccagt tctgcccgat cgcagatatc aactttctca aaggcaaagc
    27421 gatcgctttg cgcgaccggt gccagcgaca tcaggtttcc ggcgtaggtc agcttatcga
    27481 ccactaccac cgcgtcgctc gtttcgttga tgatataacg caccagcgcc gagccaataa
    27541 acccggcacc acctgttatc agaatttttc tcatcagcgc cagactcctt tggcatcgac
    27601 gacatactgc tgatggacat tgtcgccatt gataacttta aactgactat gatcgaccag
    27661 catcaccagc acgtctgccg ttgccagcgc ctcgtcaagc tgcgccagag tacaaagccc
    27721 ggtcagtttt ttcggcaact ggtggatgtt aggctcaaca accagagttt cgccgctatg
    27781 ccactgggcg atcagttcag cgatttccat cgccgggctt tcgcgcaggt catcaatatt
    27841 cggtttaaac gccagaccaa agcaggcgat tttcagttca ctggcgcgtt tatcggtagc
    27901 cgccaggcaa tcagccaccg ccgctttcac ctgatcgata acccagaacg gtttgtgatc
    27961 gttcacttcg cgcgcggtac ggataagccg cgcctgctgg gggttctgtg ccacgataaa
    28021 ccacggatca acagcaatgc agtgaccgcc cacgccaggg ccaggctgaa gaatattaac
    28081 gcgagggtga cgattcgcca ggcgaatcag ttcccagacg ttaatcccct gatcggcaca
    28141 aatcagcgac aattcattag caaaagcgat attcacatcg cggaagctgt tttcggtgag
    28201 cttacacatt tccgccgtcc gcgagttagt gacgacacac tcaccttcga ggaaaatttt
    28261 gtacagttcg ctggcgcggg tcgaacaaac cggcgtcata ccaccaatca cgcgatcgtt
    28321 tttaatcagc tcgaccataa cctggcccgg taacacgcgt tccgggcagt aagcaatgtt
    28381 gacgtccgcc tgctcgccca cctgctgtgg gaaagtgaga tccggacgca tctctgctaa
    28441 ccattctgcc atcttctcgg ttgaccccac cggcgaggtg gattcaagga tcaccagcgc
    28501 gccttttttc agcactggcg caatggagcg agcagccgat tcaacgtagg tcatatctgg
    28561 ctcatgatcg cctttaaacg gcgtgggtac agcaatcagc caggcatccg cttcaactgg
    28621 cgtcgtgctc gctcgtaaaa aaccgccttc tacggcagtt tttactacgc tcgccaaatc
    28681 aggctcgacg atatggattt cgccacgatt gatggtatca accgcgtgtt ggttgatatc
    28741 gacaccaatc acctgttttt gccgtgaggc aaacgctgct gctgtaggca gcccgatgta
    28801 acccagtccg ataacagaaa tggtcgcaaa actcatagtg atatccgatt attttttaac
    28861 gcttccagaa tgcgagagca tgcctgacca tcaccatacg ggttatgggc gcggctcata
    28921 gtttgatatt cgttttcgtc ttttaaaaga cgcgtcactt cctcgacaat tcgctgctta
    28981 tccgtgccta ccagacgcac cgtacccgcc gtcaccgctt ccggacgctc agtggtatcg
    29041 cgcatcacca gcaccggttt ccccagcgaa ggcgcttctt cctgaatgcc gcctgagtcg
    29101 gtcaaaatca gccaggcgtg gttcatcaac cagacaaacg gtaaatactc ctggggatcg
    29161 atcagaatga catttttcac atgccccaga atgcgattga ccggctctct gacgttcggg
    29221 ttgagatgca ccggatagac aatctggatg tcctggtgcg tggtggcaat gtctgccaac
    29281 gcgtggcaga tttcttcaaa accacgaccg aaactctcac gcctgtgacc ggtcaccaga
    29341 atcatctttt tattggggtc gataaacggg taatttgcca ccagttctga acgcagcgtg
    29401 tcgctgctca tcacctgatc acgcacccat aacagtgcat caatgactgt attaccagta
    29461 atgaagattc ggctatccgc aacgttttca cgcagcaagt tttgccggga agtttcggtt
    29521 ggagagaagt gatacatcgc cagatgcccg gtcaatgtac ggttagcctc ttccggccac
    29581 ggcgaataga gatcgcccgt gcgtaaacca gcctcaacgt gaccaacagg aatacgctga
    29641 taaaacgccg ccaggctggt tgccagcgtc gttgttgtgt cgccgtgaac cagcacgacg
    29701 tctggtttga actcggcaag aataggtttt agcccttcca gaatccgaca ggttatctct
    29761 gtcaggccct gtcctggctg cattatgttg agatcgtagt caggtacaat ggaaaagagt
    29821 ttcagcacct gatcgagcat ctcccgatgc tgcgcagtga cgcaaacttt agcctcaaaa
    29881 aaaggagctt ttgccaacgc atgcaccaac ggagccatct tgatggcttc cgggcgcgta
    29941 ccaaatacag tcagtacttt cacatcgatt ctcttcgaat aagcggcgag cgcctttgcg
    30001 ctcgccgcag cagtgttgct atttcgagca acggcgggtt aatgcgacac cagccccgat
    30061 cagccccccg acaatgcccc acataatcat caggaaggca cgacgtgggc tatcgcgttt
    30121 taccggttct tccggcgtac gcaaatagcg ataggtctga aaacgcggat ccagggttgg
    30181 accaacattc agggtgttta acatggcccg attctgatca tagtcgagat caaaggccgg
    30241 accgacggcc tgtaaatttt ccagtcgagc ctggagcatt ggacgcccaa gcaggaacat
    30301 ttctgaatca ggtaattcct cggcaggcac atctgtcgca ctgcgcgaaa tattatgctg
    30361 ctcagcaatt ttcagcgcct gctcaatgct gttcatccgg cggtcgtaga tggctttcgc
    30421 cacctcttcc tgacgcttca cctgagcttt catctggatg gtgcgtgccg cccatgcgcc
    30481 tttcagctca tcattcagat ggctggctgc acgctggctg gcaaaagcaa catactgacg
    30541 taacaggtta ttagcgtcag gcgcggtttc ggcaataagc ttcacgctgt cattgaccgc
    30601 gcgggtaaag tctccgggga taaactggat gttgttaatc atttcatcca gcaacgccgc
    30661 atcggctttg ctgttgccca ccatccgctg tttgtaatag tcggtttgca gccagaactc
    30721 tctgcgggta tcccacgagg ccagttgcat aacaaactct ttataggctt cgtccatgac
    30781 cgatggttga tcggcagaag ccatgtttga acggacatcc aggttacgca aaaattgctg
    30841 ctgcgagtaa tatcccccca gcatattcac cgttggacga tcggtaatcg ccgtcgagct
    30901 ccactcctga cgagcaaaaa aagtatacgc cagcgcgatt aacgcaaacg ccagccccat
    30961 gccaataatc catagcttcc cagcccacaa ggtacgaaac aacccacgaa tatccagttc
    31021 attttcagcg tcttcggtcg gtttcccagg cattggttgt gtcatcacat cctcatttat
    31081 ttggttaaat tggggctgcc accacgattt ctacgcagtc tgcgttttac gcgcttaata
    31141 aagcgagcaa ctttccaggc acgcttaatg caatatccat agaggaagaa tgctagcaaa
    31201 aagagcacca gcatgaccca ctccgggaca aaatgagaat attctgccag cacgccaatg
    31261 gaagcgagca gtgctgcggc aagggtaatc agcacaaacg cctgacggga agtaaacccg
    31321 gcacgcatga tcaaatggtg aatatgctga cggtcaggag agaatgggct catgccttta
    31381 cgcaggcgac ggtacataat cgccaccata tccattagcg gaatggcgat tatccacaaa
    31441 gcggtaaccg ggctgatggg atgggttttg ccctgggtcg tttcgagcag gatccagata
    31501 acggtaaaac caatcagcgt actgcccgca tcacccataa agactttgta gcggcgaccc
    31561 aggataccaa ggttaagcat gatgtatggc aggatggcgg cgatcatcgc aaagcaccag
    31621 attgcgaggc tggtttgccc gtcgaaccac aaaatcatac cgattgctgc aaacgagacg
    31681 caggacaacc cgcccagcaa gccatcaatg ccatcaacca tgttgaacgc attaatggcc
    31741 gcccagacgg caaatagcgt caggaagtaa ccaaacggtc cgagcgccat ctcccaggag
    31801 ccaaagatat aacccaggct actgagataa agtttgccga acaccatcat aacaatgcca
    31861 acagcggcct gtatggtggc acggattttt acgctgatat caaaacggtc atccagcgcg
    31921 ccaatgaaaa caagcacacc ggcacaagcg agatagagag atgcatgcgg aatatagtaa
    31981 tcgacaattc cgaacgtgaa gcaaatccct gcgtaaaccg aaatcccccc aacgagaggt
    32041 atcaatccct ggtgacgttt gcggaagttt ggtttatcca ctaaaccgac tttttttgcc
    32101 accttacggg caaaaaacag aaacagtgtc gtgaataaaa aaatactgat gagatcagta
    32161 ctcactgtca gtaaattcac aatgcatgct ctcagagaaa attattagca gaagtataac
    32221 cacgaagacc tttattcaga agggaaagtc cgttccgaac ccaccagtcc tgtgcaaaaa
    32281 ttaaccattt gatatgcaaa ttgcataaca tgccagcaaa ttccaggaat tttcctaaca
    32341 tcgccagcgc ggcattaaga ttacagatat aaaagcaaaa cgccacgtaa acacgtggcg
    32401 tttttggcat aagacaaatt tatgagcgtt tcatcatttc gaagaaatcg tcattggtct
    32461 tggtcatggc cagtttatta atgaggaatt ccattgcatc gatttcgccc atcgggtgaa
    32521 tgattttgcg caggatccac attttctgca gttcttcctg agtcgtgagc agctcttctt
    32581 tacgggtacc ggaacggttg tagtcgatag ccgggaagac gcgtttttca gcgatcttac
    32641 gagagaggtg cagttccatg ttgcctgtac ctttaaactc ttcgtaaata acttcgtcca
    32701 ttttagaacc ggtatcgata agcgccgtcg cgataatggt caggctgccg ccctcttcca
    32761 cgttacgcgc cgcaccgaag aagcgtttcg gacgatgaag ggcattggcg tccacaccac
    32821 cggtcaacac tttacctgac gccggaacaa cagtgttgta agcgcgcgcc agacgagtga
    32881 tggagtcgag cagaatgata acgtctttct tgtgctcaac caggcgtttg gccttctcga
    32941 tcaccatttc cgcaacctga acgtggcgag atgcgggttc gtcaaaggta gaagcaacaa
    33001 cttcaccttt taccagacgc tgcatctcgg ttacttcttc cggacgttcg tcgatcagca
    33061 gaaccatcag cacacaatcc gggtggttgt aagcaatgct ctgagcaatg ttctgcagca
    33121 gcatagtttt accggctttc ggcggtgcca caatcagacc acgctgacca cgaccgatag
    33181 gtgatgccag atccagtacg cgagcggtta aatcttccgt agaaccgtta ccacgttcca
    33241 tacgcagacg agagtttgcg tgcagcgggg ttaagttctc aaagaggatt ttgttgcggg
    33301 cgttttcagg tttgtcgaag ttaacttcgt taactttcag cagcgcaaaa tagcgttcac
    33361 cttctttcgg cgggcgaatc ttaccagaga tggtatcacc agtgcggagg ttgaaacggc
    33421 ggatttggct aggggaaacg tagatgtcat caggaccggc gaggtaggag ctgtctgcgg
    33481 aacggaggaa accaaatcca tcctgcaata tctccagtac gccatcacca aagatatctt
    33541 cgccactctt tgcgtgctgc ttcaggatgg caaaaataat gtcctgctta cgcatacgag
    33601 ccaggttttc cagccccata ttttcgccga gagtgatcag ctcagaaacc ggcgtattct
    33661 ttaattcggt aagattcata gtggtgtgag ttcttaaact tggggtaaat ctcgaactta
    33721 atgttgtgaa tggtatggca ggatcatcca tgcctgttta cggtcatcga ctcatgtctt
    33781 ttcgctgcct ggtcacagga gagtacgcag aactgaaacg acaagacgga ttgagtgacg
    33841 agccagaaat ctgttcactt cgcatttaag ataaaacggg aagcgttgga aattacaaga
    33901 ttcaaactta ataaggtatg tttaatacga agtcaacact aagttagcat gactcacgcc
    33961 gggcgtccag tttttagcga cggggcaccc gaacatgaaa ttcccttacg ccaggttagc
    34021 gtcgaggaac tctttcaact gacctttaga cagtgcaccc actttggttg ccgccacttc
    34081 accgtttttg aacagcagca gagtcgggat accacggatg ccatatttcg gcgcagtgcc
    34141 agggttttga tcgatgttca gttttgcaac ggtcagtttg ccctgatatt cgtcagcgat
    34201 ttcatccaga atcggggcga tcattttgca cggaccgcac cactctgccc agaaatcgac
    34261 gaggatcgcc ccgtccgctt tgagtacatc cgtgtcaaaa ctgtcgtcag tcaggtgaat
    34321 aattttatcg ctcatatata actccacagg aataagcctg gcgtgttggt ttcgttgttg
    34381 gtgtaacatt aaccaactaa aggttgactt tatttcaccg gatacgcttt cgtaaagcaa
    34441 tagtaagctg atattctacc acactatgag caaaacacat ttaacagaac agaagttttc
    34501 cgacttcgcc ctgcatccga aggttgtaga agtccttgaa aaaaaagggt ttcataactg
    34561 tacgcccatt caggcactgg cccttccgct gacgctggcg ggtcgtgacg tagccgggca
    34621 ggcgcaaacc ggtaccggga aaacgatggc gtttcttacg tcaacgtttc attatcttct
    34681 ctctcatcct gcgattgccg atcgcaaggt gaatcaacca cgtgccttaa ttatggcacc
    34741 gacgcgtgaa cttgccgtgc agatccatgc cgacgcagaa ccgctggcgg aagctaccgg
    34801 cctgaagctg ggtctggctt acggtggtga tggctacgac aaacagctga aagtgctgga
    34861 aagcggcgtt gacattctga ttggcactac ggggcgttta attgactacg ccaagcagaa
    34921 ccacattaac ctcggtgcca ttcaggtggt ggtactggac gaagccgatc gcatgtacga
    34981 tctgggcttt attaaagata tccgctggct gttccgccgt atgccgcctg caaaccagcg
    35041 cctcaacatg ctgttctccg ccacgctttc gtaccgggta cgtgaactgg cgttcgagca
    35101 gatgaacaat gccgaatata ttgaagtgga accggaacag aaaacgggcc accgtattaa
    35161 agaagagctt ttctaccctt ctaacgaaga aaaaatgcgt ttgctgcaaa cgctgatcga
    35221 agaagagtgg ccagacagag cgattatttt cgccaatacc aaacaccgtt gtgaagagat
    35281 ctggggccac ctggcggcag atggtcatcg tgtcggtttg ttgacaggcg atgtcgcgca
    35341 gaaaaaacgt ctgcgtattc ttgatgaatt tacccgtggc gatctggata ttctggttgc
    35401 caccgacgtt gccgcgcgtg gtttgcatat tccggcagtg acgcacgtct ttaactacga
    35461 tttacccgat gactgtgaag attacgttca ccgtattggt cgtacaggtc gcgcaggcgc
    35521 aagcggtcac tctatcagcc tggcgtgtga agagtatgca ttgaatttgc ctgctattga
    35581 gacctatatt ggtcactcaa ttccggtaag caaatacaat ccggacgcat tgatgaccga
    35641 tctgccaaaa ccgctgcgcc tcacgcgccc acgtacaggc aatggtccgc gtcgtactgg
    35701 cgctccgcgt aatcgtcgtc gttcaggtta aataaaatgt catactcaaa atcattcaaa
    35761 ctgtatcaag atggcaagag aatgaatccc gatgagcata ctgtagtaag tgattcaggt
    35821 gaaagaatgc agccaacaca gagacagatt gaaggatgaa gagtatgggt tccacctcgt
    35881 cgctgtatgc agccattgat ctcggttcga atagttttca tatgctggtt gtgcgcgagg
    35941 tggctggaag catccagacg ctgacgcgaa taaaacgcaa agtgcgtctg gctgctggcc
    36001 tgaatagcga aaatgccctg tctaatgaag caatggagcg cggttggcaa tgtctgcgcc
    36061 tgtttgctga acgtctgcaa gatatccctc cctcgcaaat tcgcgttgtc gctacggcga
    36121 cattacgtct tgccgtcaat gcgggtgatt ttattgccaa agcgcaggaa atcctcggtt
    36181 gtccggtaca ggtgatcagc ggtgaagagg aagcacgtct gatttatcag ggcgttgctc
    36241 acacaactgg cggtgccgat cagcgcctgg tggtggatat aggcggtgcc agtactgaac
    36301 tggtaaccgg cacgggtgca caaaccacct cgttgttcag cctgtcgatg ggctgcgtca
    36361 cctggctgga acgctatttt gccgatcgta atctggggca ggaaaatttt gatgctgcag
    36421 aaaaagcggc acgcgaagtg ttacgtccgg ttgccgatga attacggtat cacggctgga
    36481 aagtgtgcgt tggtgcttcc ggcaccgtgc aggcgttaca ggaaatcatg atggcacagg
    36541 ggatggatga acgcattacc ctggaaaagt tgcagcaatt gaaacagcga gccattcatt
    36601 gcggtcggct ggaggaactg gagattgacg ggctgacgct ggaacgtgcg ttagtgttcc
    36661 cgagtggtct ggcgatcctg atcgccattt ttaccgaact gaatattcag tgtatgaccc
    36721 tggcgggcgg tgcgctgcgt gaaggcctgg tctacggcat gttgcatctg gccgtcgagc
    36781 aggatattcg cagccgtacg ctgcgtaata ttcagcgccg ctttatgatc gatattgatc
    36841 aggcgcagcg cgtagccaaa gttgcggcta acttcttcga tcaggtggaa aaggaatggc
    36901 atcttgaagc aataagccgc gatttgctca tcagcgcctg tcagcttcat gaaatcggcc
    36961 tgagcgttga ctttaaacaa gcgccgcaac acgctgctta tctggtgcgt aatctggatc
    37021 ttcccggttt tacccccgca cagaaaaaat tgctggcgac gctactgctc aaccagacta
    37081 atccggtcga tctctcatcg ctgcatcagc aaaatgccgt accgccgcgc gtcgcagaac
    37141 aactctgccg tttactccgc ctggccatca tttttgccag ccgtcgccgt gacgatctcg
    37201 tgccagagat gacattacag gctaaccatg aactgttgac cttgacgctt ccgcaaggtt
    37261 ggctaaccca acatccgctg ggtaaagaga ttattgctca ggaaagccag tggcagagct
    37321 atgtccactg gccgctggaa gtgcattaat gagtaagtgc cggatgcgat gctgacgcat
    37381 cttttccggc cttgattatt tccctcgttt tgccgccatc atcgctttca gattcgccag
    37441 atggctttgc cctttctgca tccgttcttc ggcgctgacc actttgcgct cctgttccca
    37501 aatcagatca tcctgcggca gctccagcaa aaagcggctc ggctccgggc gcaccagctc
    37561 gccgtactga cggcgttctt tacacagcgt aaaggtcaat tccttctggg cgcgggtaat
    37621 gccgacatag gccagccgcc gctcctcatc gatattatct tcatcgatgc tgctctggtg
    37681 cggcaaaaac ccttcttcca taccgaccat gtagacataa ggaaactcca gcccttttga
    37741 cgcgtgcaga gtcatcagtt gcacctgatc cagctcttct tcactctcac cacgctccat
    37801 catgtcgcgc aaagtaaagc gcgtcaccac ctgggtgagc gtcatcggct catccagttc
    37861 gctgccttcc agcatctccg tcatccagct aaacagttgg ttgacgttct tcatgcgcat
    37921 ttcggcggct ttcgggctgg gcgatgtttc gtacagccag gattcataat ccatgccgtg
    37981 gatcagatcg cgcaccgcgg caatcggctc ccgctccgcc agacgctgga tttctgccaa
    38041 ccagtgagta aagcgggtca atgcttcata accacgtccg ctaagcgtct gactcaggcc
    38101 catatcaaag ctggcggtaa acatgctttt attgcgcgtc atcgcccact cacccagctt
    38161 tttcagcgtc gccgggccaa tctctctctt cggcgtgtta acgatacgca gaaatgcgct
    38221 gtcatcgtcc gggttagtca gcacgcgcag ataagccagc aagtccttga tttcaggacg
    38281 agagaaaaac gacgtaccac cagaaatttt gtacgggatg cggttttgca tcaggaattt
    38341 ttcaaacact cgcgactgat ggttaccgcg ataaagaata gcgtaatatt tgtactgcgt
    38401 tttattgacg aagtgatgcg caatcagttc accagtgacg cgctcggctt catgttcttc
    38461 gttattcgcg cttaaaactt taagctctgt gccgtaaccc agttcggaga acagacgctt
    38521 ctcaaagacg tgcgggttat tggcgatcag gatgttcgcc gctttcaaaa tacgtccgga
    38581 agagcggtag ttctgctcaa gcttaatcac cttcagcgcc ggaaaatcct gactcagcag
    38641 caccaggttt tgtggacgtg cgccgcgcca ggagtagatc gactggtcgt catcgcccac
    38701 cacggtaaag cgcgcgcggc tgcccaccag cagtttcacc agttcatact ggctggtgtt
    38761 ggtgtcctga tactcatcca ccagcagata gcgaattttg ttctgccagc gctcacggac
    38821 ttcttcattg cgttgcagca gcaacgtcgg caataaaatc agatcatcga agtcgagaac
    38881 attgcacgct ttcaggtgtg catcatacag cccataacaa tgggcaaaaa tacggtcccg
    38941 ctcaccaatc gcactggctg ccgcctggga cggtgttttg agatcgttct tccagttaga
    39001 gatggtcgaa atcaactgtt gcaggagaac tttgtcatct tcaatcagcc cttcggtcaa
    39061 ctctttgagc aacgccagct gatcggtatc gtcaaacagc gaaaagttcg ccttcatccc
    39121 cagcgccgca tactcacgct tgatgatatc cagccccagc gtgtggaagg ttgagatcat
    39181 cagcccacgc gcctctttgc gacccagcgt ctgtccgaca cgctctttca tctcgcgcgc
    39241 cgccttattg gtaaaggtca ccgccgcgat atgtcgcgcc tgataaccgc aaccgcggat
    39301 cagatgggcg attttattgg tgatcacacg agttttaccg gaacccgcgc ccgccagcac
    39361 caggcagggg ccggtaacga attcgacagc ttgttgttgg ccggggttta gacgcatagg
    39421 tgtattgctc aatcttcgaa cggggggagg attgtagcag aatcgcattt gaatgtgacc
    39481 gcgtgtaagc cgctaaccgg ttggctgcgg atgtttaaat cagagaggga agaccgaaac
    39541 cggagttcat cgtgaatcca ttagacttag aaaatatcgg gtcgtaacgt tgtgttatta
    39601 ctttttcaga gtttactaag gagaggtgta ctcgtggcga ttaatttcag tcctaaggtt
    39661 ggtgaaatac tggaatgcaa ctttggtaac tatcctgtta gccagaatgg acagttcagc
    39721 accacgtatt acgatggccg cattcctcct gaaatgataa aaaacaggtt a
//
LOCUS       DAJVUY010000016        38856 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.016, whole genome shotgun sequence.
ACCESSION   DAJVUY010000016 DAJVUY010000000
VERSION     DAJVUY010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38856
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.016"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..790
                     /locus_tag="OQQ72_000780"
     CDS             <1..790
                     /locus_tag="OQQ72_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2010601.1"
                     /translation="DSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQT
                     GVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGD
                     FHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITY
                     DCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQ
                     NGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVMVR"
     gene            complement(833..1693)
                     /gene="rsmI"
                     /locus_tag="OQQ72_000781"
     CDS             complement(833..1693)
                     /gene="rsmI"
                     /locus_tag="OQQ72_000781"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCS2010602.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1757..3784
                     /gene="lpoA"
                     /locus_tag="OQQ72_000782"
     CDS             1757..3784
                     /gene="lpoA"
                     /locus_tag="OQQ72_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoA"
                     /protein_id="HCS2010603.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ
                     ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQPVP
                     VSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGARIVVGPLLKNNVEEL
                     LKSNTPLNVLVLNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSS
                     LGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATTDSG
                     MTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAMLYAS
                     SRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDA
                     WSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3742..4137
                     /locus_tag="OQQ72_000783"
     CDS             3742..4137
                     /locus_tag="OQQ72_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HCS2010604.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4157..4747
                     /gene="diaA"
                     /locus_tag="OQQ72_000784"
     CDS             4157..4747
                     /gene="diaA"
                     /locus_tag="OQQ72_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HCS2010605.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4757..5332
                     /gene="yraP"
                     /locus_tag="OQQ72_000785"
     CDS             4757..5332
                     /gene="yraP"
                     /locus_tag="OQQ72_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HCS2010606.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5446..6486)
                     /locus_tag="OQQ72_000786"
     CDS             complement(5446..6486)
                     /locus_tag="OQQ72_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS2010607.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAICLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEARSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6559..7194)
                     /locus_tag="OQQ72_000787"
     CDS             complement(6559..7194)
                     /locus_tag="OQQ72_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HCS2010608.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7322..7840
                     /gene="yhbO"
                     /locus_tag="OQQ72_000788"
     CDS             7322..7840
                     /gene="yhbO"
                     /locus_tag="OQQ72_000788"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HCS2010609.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7820..8263)
                     /locus_tag="OQQ72_000789"
     CDS             complement(7820..8263)
                     /locus_tag="OQQ72_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HCS2010610.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     HRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8314..8616
                     /gene="yhbQ"
                     /locus_tag="OQQ72_000790"
     CDS             8314..8616
                     /gene="yhbQ"
                     /locus_tag="OQQ72_000790"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HCS2010611.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8603..9106)
                     /locus_tag="OQQ72_000791"
     CDS             complement(8603..9106)
                     /locus_tag="OQQ72_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS2010612.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9100..9624)
                     /locus_tag="OQQ72_000792"
     CDS             complement(9100..9624)
                     /locus_tag="OQQ72_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HCS2010613.1"
                     /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADVSDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLHVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9833..10813
                     /locus_tag="OQQ72_000793"
     CDS             9833..10813
                     /locus_tag="OQQ72_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS2010614.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10822..11700
                     /locus_tag="OQQ72_000794"
     CDS             10822..11700
                     /locus_tag="OQQ72_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS2010615.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11906..12913
                     /locus_tag="OQQ72_000795"
     CDS             11906..12913
                     /locus_tag="OQQ72_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase-like monooxygenase"
                     /protein_id="HCS2010616.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(13031..14275)
                     /gene="mtr"
                     /locus_tag="OQQ72_000796"
     CDS             complement(13031..14275)
                     /gene="mtr"
                     /locus_tag="OQQ72_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HCS2010617.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14429..16318)
                     /gene="deaD"
                     /locus_tag="OQQ72_000797"
     CDS             complement(14429..16318)
                     /gene="deaD"
                     /locus_tag="OQQ72_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DeaD"
                     /protein_id="HCS2010618.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16311..16391)
                     /gene="yrbN"
                     /locus_tag="OQQ72_000798"
     CDS             complement(16311..16391)
                     /gene="yrbN"
                     /locus_tag="OQQ72_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HCS2010619.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16498..17382)
                     /gene="nlpI"
                     /locus_tag="OQQ72_000799"
     CDS             complement(16498..17382)
                     /gene="nlpI"
                     /locus_tag="OQQ72_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HCS2010620.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDSDSATALFKLAVANNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17491..19626)
                     /gene="pnp"
                     /locus_tag="OQQ72_000800"
     CDS             complement(17491..19626)
                     /gene="pnp"
                     /locus_tag="OQQ72_000800"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCS2010621.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRSVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19874..20143)
                     /gene="rpsO"
                     /locus_tag="OQQ72_000801"
     CDS             complement(19874..20143)
                     /gene="rpsO"
                     /locus_tag="OQQ72_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCS2010622.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20292..21236)
                     /gene="truB"
                     /locus_tag="OQQ72_000802"
     CDS             complement(20292..21236)
                     /gene="truB"
                     /locus_tag="OQQ72_000802"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCS2010623.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITIYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGKKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21236..21637)
                     /gene="rbfA"
                     /locus_tag="OQQ72_000803"
     CDS             complement(21236..21637)
                     /gene="rbfA"
                     /locus_tag="OQQ72_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HCS2010624.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21801..24449)
                     /gene="infB"
                     /locus_tag="OQQ72_000804"
     CDS             complement(21801..24449)
                     /gene="infB"
                     /locus_tag="OQQ72_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS2010625.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKN
                     AQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSS
                     DYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRG
                     GKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAM
                     ATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHV
                     DHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG
                     AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ
                     YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFL
                     DKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLS
                     GVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVN
                     IVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNV
                     RADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKS
                     PKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIG
                     VKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24474..25961)
                     /gene="nusA"
                     /locus_tag="OQQ72_000805"
     CDS             complement(24474..25961)
                     /gene="nusA"
                     /locus_tag="OQQ72_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCS2010626.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25989..26441)
                     /gene="rimP"
                     /locus_tag="OQQ72_000806"
     CDS             complement(25989..26441)
                     /gene="rimP"
                     /locus_tag="OQQ72_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HCS2010627.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGHTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(26648..26724)
                     /locus_tag="OQQ72_000807"
     tRNA            complement(26648..26724)
                     /locus_tag="OQQ72_000807"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26688..26690),aa:Met,seq:cat)
     gene            27072..28415
                     /gene="argG"
                     /locus_tag="OQQ72_000808"
     CDS             27072..28415
                     /gene="argG"
                     /locus_tag="OQQ72_000808"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HCS2010628.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
     gene            complement(28423..30048)
                     /locus_tag="OQQ72_000809"
     CDS             complement(28423..30048)
                     /locus_tag="OQQ72_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS2010629.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCAFAFLSLLFWAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ
                     FAYKDAKNKKTFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVR
                     DTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISSAPYTALSVP
                     LSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETV
                     YVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDAC
                     YDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHV
                     PMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDS
                     RVVDANHDVFDYVMFRKEFTEDKQGNPPPEGQG"
     gene            complement(30507..30593)
                     /locus_tag="OQQ72_000810"
     tRNA            complement(30507..30593)
                     /locus_tag="OQQ72_000810"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30557..30559),aa:Leu,seq:gag)
     gene            complement(30608..30940)
                     /gene="secG"
                     /locus_tag="OQQ72_000811"
     CDS             complement(30608..30940)
                     /gene="secG"
                     /locus_tag="OQQ72_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCS2010630.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(31168..32505)
                     /gene="glmM"
                     /locus_tag="OQQ72_000812"
     CDS             complement(31168..32505)
                     /gene="glmM"
                     /locus_tag="OQQ72_000812"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HCS2010631.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIISKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(32498..33346)
                     /gene="folP"
                     /locus_tag="OQQ72_000813"
     CDS             complement(32498..33346)
                     /gene="folP"
                     /locus_tag="OQQ72_000813"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCS2010632.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(33436..35370)
                     /gene="ftsH"
                     /locus_tag="OQQ72_000814"
     CDS             complement(33436..35370)
                     /gene="ftsH"
                     /locus_tag="OQQ72_000814"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HCS2010633.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(35470..36099)
                     /gene="rlmE"
                     /locus_tag="OQQ72_000815"
     CDS             complement(35470..36099)
                     /gene="rlmE"
                     /locus_tag="OQQ72_000815"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HCS2010634.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            36225..36518
                     /gene="yhbY"
                     /locus_tag="OQQ72_000816"
     CDS             36225..36518
                     /gene="yhbY"
                     /locus_tag="OQQ72_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HCS2010635.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(36675..37151)
                     /gene="greA"
                     /locus_tag="OQQ72_000817"
     CDS             complement(36675..37151)
                     /gene="greA"
                     /locus_tag="OQQ72_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS2010636.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            37399..38832
                     /gene="dacB"
                     /locus_tag="OQQ72_000818"
     CDS             37399..38832
                     /gene="dacB"
                     /locus_tag="OQQ72_000818"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS2010637.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMIATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVIPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
BASE COUNT         9439 a        10577 c         9577 g         9263 t
ORIGIN      
        1 tgacagcctg gatattaaaa ccacattaca ggcaaacgac attccaggac tcacaaccga
       61 ccaggttgtc tctgttaaca cccgattcac acagataaaa agcagcaccg tatattctgc
      121 tgcaacccaa acgggtgttt gccagggtga cacgtctcgt tatggacccg ttaatattgg
      181 tgcaaatacc acctttaccc tgtatgtcac caagccattt ctcggctcga tgaccattcc
      241 gaaaacggat attgccgtca ttaaaggcgc gtgggtcgat ggaatgggaa gcccgtctac
      301 aggtgacttc catgatttag tcaagttatc gattcaggga aatctcaccg ccccacagtc
      361 gtgcaaaatt aatcagggcg atgttattaa ggttaatttt ggattcatca atggtcagaa
      421 gtttaccacc cgcaatgcca tgccagacgg ttttactcca gtagactttg atatcactta
      481 tgactgtggt gatacttcaa agattaaaaa ctcgttgcaa atgcgcatcg acggtacaac
      541 tggggtagta gaccagtaca acctggtcgc caggcgaaga agttcagaca atgtgcccga
      601 tgtcggtatt cgtattgaaa atctcggcgg cggagttgca aatattcctt ttcagaacgg
      661 tatccttccc gttgatcctt ccgggcatgg caccgtcaat atgcgcgcct ggccagttaa
      721 tctggtcggt ggtgagctgg aaacaggaaa atttcagggc acagccacca ttaccgtcat
      781 ggtgcggtaa aagaagacgt tgcgttttga ttaacgcaac gcttcggcac tgttacccct
      841 gctgctccag cgcatactta tacagcgcat ttttcttcac gccatgaatt tctgcgacca
      901 gcgccgccgc ttttttcagc ggcagttctg cctgtagcag cgccagcgtg cgcagggcat
      961 cggcgggtaa gtcttcttcc tgtgctttat gaccttcgac aatcagcacc atttcgcctt
     1021 tgcgacggtt ttcatcttcc tttacccacg ccagcagttc gccaacgggc gcgccgtgaa
     1081 tggtttccca ggttttggtc agctcacgcg ccagaaccac gtagcgggat tcgcctaata
     1141 ccgcaacgat atcttccagg ctatctaaca gacggtgggt ggattcataa aaaatcagcg
     1201 tgcgcggctc cgcttcaatg gcttttagcg catcacggcg gccttttgat ttggcaggta
     1261 aaaagccttc gtaacagaaa cggtcagagg gtaaacccgc ggcgcttaac gcagtgatag
     1321 cagcacacgg cccgggtagc ggcaccacgc gaatccccgc ttcacggcag gtacgcacca
     1381 gatggtagcc aggatcgtta attagcggcg ttccggcatc ggaaaccagc gcaatgtttt
     1441 gcccctcttg cagcttcgcc agcagcgttt cggctttttg ttgttcgtta tggtcgtgca
     1501 gcgcaaacaa ccgggcatta atcccaaaat gttgcagcaa taaaccggtg tgacgagtat
     1561 cctcggcggc aatcagatca acggcctgta atacctctaa cgcacgctgg gtgatatccg
     1621 ccagattgcc gattggcgtc ggtacaatgt aaagctggcc ctgagaatta tccgccgatt
     1681 ggtgttgttt cattgtgtcg tccgtattgc cgatttaata ttgagcattg cgtaaaaaaa
     1741 tatcactgga tacattatgg taccctcaac attttctcgt ttgaaagccg cgcgttgtct
     1801 gcctgttgtt ctggcagccc tgattttcgc cggttgtggc acccatactc ccgatcagtc
     1861 cactgcttat atgcagggca cggcgcaggc tgattctgcc ttttatcttc agcagatgca
     1921 gcaaagctct gatgatacca ggatcaactg gcaattactc gccattcgtg cactggtgaa
     1981 agaaggtaaa accgggcagg cggttgagtt gtttaaccaa ctaccgcaag aactgaacga
     2041 ttctcagcgt cgcgagaaaa cactgctggc ggtagagatt aaactggcgc agaaagattt
     2101 tgctggcgcg caaaacttgc tggcgaaaat cacacctgcc gatttagaac aaaaccagca
     2161 agcgcgttac tggcaggcaa aaatcgatgc cagccagggg cgtccttcca ttgatttact
     2221 gcgcgcgtta attgctcagg aaccgctgct cggcgcgaaa gaaaaaaagc agaatattga
     2281 tgccacctgg caggcgctct cctccatgac tcaggaacag gcgaatacgc tggtgatcaa
     2341 cgccgacgaa aatattctgc aaggctggct ggatctgcag cgcgtctggt ttgataaccg
     2401 taacgatccc gatatgatga aagccgggat cgccgactgg cagaaacgtt atccgaacaa
     2461 tccgggcgcg aaaatgctgc caacgcagtt ggttaacgta aaagcgttta aaccagcctc
     2521 gaccaacaaa atcgccctgc tgttgccgct gaatggccag gcagcggtat ttggtcgcac
     2581 tattcagcaa ggctttgaag cggcgaaaaa tatcggcact cagccagtgg cggctcaggt
     2641 agctgccgca gacgtagcag aacaacctca gccgcaaact gcggatggcg ttgccagccc
     2701 ggcacaagcc tcggttagcg atctgaccgg tgatcagcct gcggcccagc cggtgcctgt
     2761 aagcgccccg gcgacaagca ccgcagcggt aagcgcaccc gcaaatccat ccgcagagct
     2821 gaaaatctac gatacctcat cacaaccact tagccagatc ttaagccagg ttcagcagga
     2881 tggcgcgaga attgtggttg gtccgttgct gaaaaataac gttgaagagt tgcttaagag
     2941 caacaccccg ctgaacgtgc tggtactgaa ccagccggag aatatcgaaa accgcgtcaa
     3001 tatttgttac ttcgcgcttt caccggaaga cgaagcgcgc gatgcagcgc gtcatattcg
     3061 tgaccagggt aaacaagcgc cgctggtgct gatcccacgc agttcattgg gcgatcgcgt
     3121 agccaatgcg tttgcgcagg agtggcagaa actgggcggc ggcaccgttc tgcaacaaaa
     3181 atttggttcc accagcgaat tacgcgcggg tgttaacggc ggttctggta tcgctttaac
     3241 gggtaccccg attactccca gagcgacaac cgactccggc atgacgacca acaatccaac
     3301 gctgcaaacc acgccaaccg atgaccagtt caccaataat ggcggtcgtg tcgatgcggt
     3361 gtacattgtg gcaacgccgg gtgaaatcgc ttttatcaaa ccgatgatcg ccatgcgtaa
     3421 cggtagccag agcggtgcaa tgctgtacgc cagctcccgc agcgcacaag gcaccgcagg
     3481 cccggatttc cgtctggaga tggaaggttt gcagtacagc gaaatcccga tgctggcggg
     3541 cggtaatctg ccgttaatgc agcaggcact cagcgcggtg aataacgatt attcactggc
     3601 tcgcatgtat gcgatgggcg tcgatgcctg gtcgctggca aatcatttct cacaaatgcg
     3661 ccaggttcag ggttttgaaa tcaacggtaa taccggaagc ctgacggcaa acccggattg
     3721 cgtgattaac aggaagttat catggctaca gtaccaacaa ggtcaggtag tccccgccag
     3781 ttaaccacca aacagaccgg cgatgcgtgg gaagtacaag cgcgtcgctg gctggaaggc
     3841 aaaggactgc gatttgtcgc cgctaacgtg aacgagcgtg gcggtgagat cgatctgata
     3901 atgcgtgaag gctggaccac cgtttttgtc gaggtgcgtt accgccgctc tgcgctttat
     3961 ggcggcgcgg cagccagtgt gacccgcagc aaacaacaca aattattaca gactgcccgc
     4021 ttgtggctcg cgcgtcataa tgggagtttt gatactgtgg attgccggtt cgatgtggta
     4081 gccttcaccg ggaatgaggt tgagtggatt aaggatgcct ttaatgacca ctcataatta
     4141 aggtttaagg attagcgtgc aagaaagaat taaagcttgc ttcactgaaa gcattcaaac
     4201 tcaaattgcg gcggcagagg cgcttccgga tgccatctcc cgtgcagcca tgacgctggt
     4261 tcagtctctg ctcaatggca acaaaatcct ctgttgtggt aatggaactt ccgctgccaa
     4321 tgcacagcat tttgctgcca gcatgatcaa ccgtttcgaa acggagcggc ccagcttacc
     4381 tgccattgca ctaaatactg ataatgttgt cttaacggcg attgccaacg atcgcttaca
     4441 tgatgaagtg tatgcaaaac aggtgcgggc gctgggtcat gcgggagatg tattgttagc
     4501 catttccacc cgtggcaaca gccgcgatat tgttaaagca gttgaagccg ccgttacgcg
     4561 tgatatgacc attgtggcat tgaccggcta tgacggcggc gaacttgcag gtttgttagg
     4621 gccacaggat gtggagatcc gcattccttc gcatcgtagt gctcgcattc aggaaatgca
     4681 tatgctgacg gtaaattgcc tgtgcgatct gatcgataac acgcttttcc ctcaccagga
     4741 tgattaagga gaatacatga aggcattatc gccaatcgca gtccttattt ccgcgctgct
     4801 gttgcaaggt tgtgttgccg ctgccgtagt gggtaccgct gctgtgggta ccaaagccgc
     4861 aactgaccca cgcagtgtcg gtacccaggt ggacgatggt accctggaag tgcgcgtgaa
     4921 cagcgcattg tcgaaagacg aacagattaa gaaagaaacc cgtattaatg tcacggcgta
     4981 tcagggcaaa gtgctgctgg ttgggcagtc accaaatgct gaactttcgg ctcgcgccaa
     5041 acagattgct atgggcgtag acggtgccaa cgaagtgtat aacgagattc gtcagggcca
     5101 gccgattggt ctgggcgaag catctaacga tacgtggatc accaccaaag tgcgttcgca
     5161 gctcttaacc agcgacctgg tgaaatcgtc caacgtgaaa gtgaccaccg aaaacggtga
     5221 agtgttcctg atggggctgg tgactgaacg tgaagcgaaa gcggcggcag atattgccag
     5281 ccgggtgagc ggcgtaaagc gggtaaccac agcgtttacg tttattaaat agcagcccct
     5341 tgtaatgcct gatgcgacgc ttgccgcgtc ttatcaggcc tacaacgatg caaaccgtag
     5401 gtcggataag gcgtttacgc cgcatccgac atgttttccc tcaaatcaga acaacagcgc
     5461 cagcccgccg acaatcacac cagacactgc caccatcgcc cctgtcagcc ataaggcttt
     5521 cgccgggaac gctttgcgca gcataatcag tgacggcaaa ctcactgccg ggagcgtcat
     5581 caacaatgcc agcgccggag cggttcccat acctgccagc atcatcgttt gtacaatcgg
     5641 aatttctgct gccgtgggaa tgacaaacaa gcatcctgct accgccatcg ccaccaccca
     5701 catcaggctg ttatcgacag caccatcggc atgggggaat aaccagacgc gtgcggcacc
     5761 caacaccagt actgcaagga tgtaaaccgg gatcgtactc cagaaaagtg tccatagcgc
     5821 cctgccccag cggctaaaaa aaccgctccg tgcttccggt atgtcaattt cgaccggtgc
     5881 ctgcgtttgc ggtgtttcac gcacccattt ttgcaccagc gtcgcaatca gcaacaccat
     5941 caccagcccg gccaccagac aaatcgccgc aaaaccccag ccgaggacaa accccataaa
     6001 caccagcgtc gccgggttta acaccggatt gcccatccag aatgccagcg caccgcccat
     6061 cgatacctgt tggcgacgca tccccgccgc gaccggagcc gcacagcagg tacacatcat
     6121 gcccggcagc gaaaacagcg ttcccagcag cgtgccgcga aagcgcgatt gcccaagcgt
     6181 acgcaacaac cagtcacgcg ggatcagcac ctgaatcaac gaaccgagga tcacccccag
     6241 caccgccgct ttccatactg cgaggaaata gatcatcgcg taatccaacg ccgcttgcca
     6301 cggattagca tccgcctgcg caaggataga tttaccgata ctgtgggttt cggctgcagt
     6361 aaacgctttg ccgtagtaat gttgccattt cacataccag agaccggcaa tgacaacgag
     6421 aaagaaaagc gcgggtttcc accactgaat gggtgttgcc gcctgagatg aagactgacc
     6481 agtcatagca ttccctagga ataagttatg ataattgagc gcgtgaatat tacgctcact
     6541 atcaattctt gggaataatt attcagctct tttgcgtaat tctgaagagc ttaaaatcgt
     6601 cacgccttca tgctcaggcc gcatcgcctc tgccagcatg acccgcgcca cgtctctcgc
     6661 atcaatggat ttccagttac ctggtaacaa acggaacagc ggcgcaaaaa gcgtttcgtt
     6721 catccgctgt ttgctacgat cgcccagtaa catcgacggg cgagcaatgg tcaatttcgg
     6781 ccagttctgg gcaattaatg cttcttccat ctcccctttg acgcggttat agaaaaacgg
     6841 cgagtgggca ttggccccca tagcactgac caccagcata tgctgcgcgc ccagccgccg
     6901 cccggttaat gcggtatcca ctaccagcgt gtaatcggca tgaataaacg cctctttgct
     6961 ccccgcttct cgccgcgtgg tgccgagaca acaaaacaca atgtcgatgg gttcggtgac
     7021 ctgcgccaac gcgtcactca gttgcggatc atggggatta aacaccccgg gcatatcgcc
     7081 caacggacgt cgcgtcggcg cagcaatggc gttaactttc ggttcattaa tcaacatccg
     7141 cagcaggtga ccgcccacca gccccgttgc gcctgtaatc agtacctgac tcatcttcgc
     7201 tcctttacag aattgtctgc cttgcgctcc acggctcatg caccagtctt aatagaccat
     7261 gaggtaatta tccccgattg tgggaaattc gcctcatcca atgcaacaac gcggaggaag
     7321 catgagtaag aaaattgccg ttttaatcag tgatgaattt gaggattcag aatttacttc
     7381 acccgcagac gagttccgta aagccggaca cgaagtaatt accattgaaa agcaagcggg
     7441 taaaacggtg aaaggcaaaa aaggagaagc cagcgtgacc atcgataaat ccatcgatga
     7501 agtgacgcca gcggagtttg atgccctgct gctaccgggc ggccattcac cggattatct
     7561 gcgtggggac aaccgttttg tcacctttac ccgtgatttt gtgaatagcg gcaaacctgt
     7621 tttcgccatc tgtcacggtc cgcagctgct gatcagcgcc gatgtgattc gggggcgcaa
     7681 actgaccgca gttaaaccga tcattattga tgttaaaaat gcgggcgcgg aattttacga
     7741 tcaggaagtc gtggttgata aagatcagct ggttaccagc cggacaccgg acgatctgcc
     7801 agcgtttaac cgcgaggcgt tacgcctgct cggtgcctga gtcgcgtagc caaatcattt
     7861 ttttaccaaa gcccagcgtg ttgtcggtga atttgatttc atcgagccgg atttcccaca
     7921 ccggggccga cagcattctg gcaaccggaa agcgatgatt gtacgccttg cgcgcgaggt
     7981 cgctttcctc accttccagc ctgcggatct cacctttaaa ctgcacaccg cgaattaacg
     8041 ctaccgtttt cggctgaccg tttaccgttc cggcaaccgc agcctgcggc ccactcatct
     8101 gcgcgtggcg cgttttttct tccgtcaaaa tgtagaaggc gactttctgc gcatcaaaca
     8161 gataaaaagc attagcgcac cacagttccc cttcctgctg cacacaccag gtgacaacat
     8221 gttgttttgc caaccaacgg ctgatggtga tgagtgtttc cattgctgtt ctcttttata
     8281 ctgtgggcct gaccttaaca tgcgacgcag acgatgacac cctggtttct ttacttgatc
     8341 cgtaccgccg acaataagct ttataccggg atcaccacgg atgtcgaacg ccgctatcag
     8401 cagcaccaaa gcggcaaagg ggcgaaagca ctgcgcggga aaggagaact gacgctggcg
     8461 ttttctgcgc cagtgggcga ccgttcgctg gcactacggg cggaatatcg cgttaagcaa
     8521 ctgaccaaac ggcaaaaaga gcgtctggta gcggaaggcg cagggtttgc agaactgttg
     8581 agcagcctgc aaaccccgga gattaaaagc gattgaaatg ctcgtgatac tcaaccagac
     8641 cggttacgcc attcagcgcg tcatccgcta aacgatgtac ctggaaggcg ctttcagtgc
     8701 ccggccagcg gcaacgcaga tcgtgatgcg ccgccagttc aaagccgaaa cgactgtaca
     8761 gcgccggatc gcccagcgtc accactgcgg catagccgaa ctcattaagc gaatcgagtc
     8821 cttcatagac cagttggcgt gccagcccct gtccacggta tttttcatca accgccaacg
     8881 gtgccatgcc gacccattgc aggtcttcgc cctgcacatc aaccggacta aatgccacat
     8941 agccaatgac ctgaccttcg tcatctgtcg ccaccagccc cagcgtcaga aagccatctt
     9001 cacgcagatc gtgaaccagc ttcgcttccg catcactttc gaatgagcga cgcagcaggg
     9061 catcaatacc cggcgcatca atgggaattt ctactcgaat tagcatggtt cacctaccga
     9121 tgtctgtttg gtttcaggcg cggttttcat tcccgcctca acaaaatccg ccagttgcag
     9181 cagcatcatg cgtaaggctt tcggcatttg ctccagttca atggcgtcca tcaggttttt
     9241 cacatgcagc cccagctccg tatcgccttc aatcaccagc cgacgctgga agaagagcgt
     9301 atctggatct tgtttacgcg ccgcaatcat cagcagatcg ctgacgtcgg cactaaaact
     9361 cacatcagct tgcgcgttct ggctgaccac cagtttgcca ttcaccaccg aggtaaacca
     9421 ttgcaggtca atatcacgca catgaatact taaccagcgg ccttcaagaa actccagctc
     9481 gccatcatcc agcgcctgac ggaattgcca gcttaagacc tgctcaagaa cctggcgttt
     9541 tagcgcaaat ggcgtcagtt ttaccggtac actcaacaga gatggcccca aatgcacaat
     9601 acgggaacga agtttatcca acacgagttt tactccctgt ttcaacaatc atcctatttt
     9661 gccatatcag aaaaataaca tagcggtata aatcaacaat tccatatgaa attgctgcta
     9721 ccaccaatac aactttaact gccttaaatc aaaaattgtc gcagcaaggt taactaaaat
     9781 cccagttcgt taacattttt gcgttttgat agcgcaacct tcaggaaaaa ttatggagct
     9841 gctctgccct gccggaaatc tcccggcgct taaggcggcc atcgaaaacg gcgcagatgc
     9901 tgtttatatc gggctaaaag atgataccaa tgcccgtcac ttcgccggcc ttaactttac
     9961 cgagaaaaaa ttgcaggaag cggtgagttt tgtccatcaa catcgccgca aacttcacat
    10021 cgcgattaac acttttgcgc atccggacgg ttacgcccgt tggcagcgcg ccgtggatat
    10081 ggcggcgcag ctgggtgccg acgcgctgat cctcgccgac ctcgccatgc tggaatacgc
    10141 cgccgagcgt tatccgaata ttgagcgcca cgtatcggtg caggcttcgg cgaccaatga
    10201 agaggcgatt aacttttatc atcgccattt tgacgttgcc cgcgtggtgc tgccgcgcgt
    10261 gttgtcgatt catcaggtga aacagctggc acgggtcaca cctgtaccac tggaagtgtt
    10321 tgctttcggc agcctgtgca ttatgtcgga aggccgttgc tatctgtcgt cgtatctgac
    10381 gggtgagtcg cctaacaccg tgggcgcgtg ttctccggcc cgtttcgtgc gctggcaaca
    10441 aacgccgcag gggctggaat cccgcctgaa cgaagtgctg atcgaccgtt atcaggacgg
    10501 cgaaaacgca ggttatccga cgctgtgtaa agggcgttat ctggtggacg gcgagcgcta
    10561 tcacgcgctg gaagaaccaa ccagtctcaa taccctggaa ctgctgccgg agttaatggc
    10621 ggcgaatatt gcttcggtga aaattgaagg ccgccagcgt agcccggcgt atgtcagcca
    10681 ggtggcgaaa gtctggcgtc aggctatcga ccgttgtaag gccgatccgc aaagcgcgtg
    10741 gatggagacg ctcgggtcga tgtccgaagg cacgcagacc acccttggcg cgtatcaccg
    10801 taaatggcag tgagaagagc aatgaaatat tccttagggc cagtgctgtg gtactggcca
    10861 aaagagacgc tggaagattt ttatcagcag gccgccacca gcagcgccga cgtgatttat
    10921 cttggtgaag cggtatgcag caagcgccgg gcaaccaaag ttggcgactg gctggagatg
    10981 gcaaaatcgc tcgccggaag tggcaagcag attgtgctct ccacgctggc gctggtgcag
    11041 gcatcctctg aactgggcga actgaaacgc tatgttgaga acggtgagtt tctgattgaa
    11101 gccagcgatc tcggcgtggt gaatatgtgc gctgaacgca aactgccgtt cgtcgccggg
    11161 cacgcgctga actgctacaa cgcggtgacg ctgaaaatat tgctcaaaca gggcatgatg
    11221 cgctggtgta tgccggtgga gctttcccgc gactggctgg tgaatctgct taatcagtgc
    11281 gatgagctgg gcattcgcaa ccagtttgaa gtggaagtcc tgagctacgg tcatctaccg
    11341 ctggcctact ccgctcgctg ctttaccgcg cgttcggaag accgcccgaa agatgagtgt
    11401 gaaacctgct gcattaagta tccgaacggg cgcaacgtgc tgtcgcagga aaaccaacaa
    11461 gtgtttgtac tcaatggcat tcagaccatg agcggctacg tttacaacct cggtaacgag
    11521 ctgacatcca tgcagggatt ggttgatgtg gtccgcctgt caccgcaggg tactgacact
    11581 ttcgcgatgc tcgacgcctt ccgcgctaat gaaaatggcg ctgcgccact attgttgacg
    11641 gcaaacagcg actgtaacgg ctactggcgg cggctggcag gactggagct gcaagcctaa
    11701 gtaaatatgc tcgtcatact tcaagttgca tgtgctgcat ctgcattcgt tcaccccagt
    11761 cacttactta tgtaagctcc tggggattca ctctcttgtc gccttcctgc aactcgaatt
    11821 atttagagca cagctcactt tgttaacaac tttaactact ctttaatgca gtattaaaga
    11881 ttaatcggta acaaagtgag ctgttatgac tgataaaacc attgcgtttt cgttactcga
    11941 tctggccccc attcccgaag gttcttcagc gcgagaagca ttctcccact ctctcgatct
    12001 cgcccgtctg gctgaaaagc gcggctatca tcgctactgg ctggcagaac accacaatat
    12061 gactggcatt gccagtgctg ccacgtcggt attgattggc tatctggcgg cgaataccac
    12121 cacgctgcat ctggggtctg gcggcgtgat gttgcctaac cactcaccgt tggtcattgc
    12181 cgaacagttc ggcacgctca atacactcta tccggggcga atcgatttgg ggctgggtcg
    12241 tgcgccaggt agtgaccaac ggacaatgat ggcgctgcgt cgccatatga gcggcgatat
    12301 tgataatttc ccccgcgatg tcgcggagct ggtggactgg tttgacgccc gcgatcccaa
    12361 tccgcatgtg cgcccggtac caggctatgg cgagaaaatc cccgtgtggt tgttaggctc
    12421 cagcctttac agcgcgcaac tggcggcgca gcttggtctg ccgttcgcgt ttgcctcaca
    12481 cttcgcgccg gatatgttgt tccaggcgct gcatctttat cgcagcaact tcaaaccgtc
    12541 ggcacgactg gaaaaaccat acgcgatggt gtgcatcaat attatcgccg ccgacagcaa
    12601 ccgcgatgcc gaattcctgt ttacctcaat gcagcaagcc tttgtgaagc tgcgccgcgg
    12661 cgaaaccggg caactgccgc caccgattca aaatatggat cagttctggt cgccgtccga
    12721 acagtatggt gtgcagcagg cgctgagtat gtcgttggta ggtgataaag cgaaagtgcg
    12781 tcatggcttg cagtcgatcc tgcgcgaaac cgacgccgat gagattatgg tcaacgggca
    12841 gattttcgac caccaggcgc ggctgcattc gtttgagctg gcgatggatg ttaaggaaga
    12901 gttgttggga tagtgtgtct taacgcggga agccttatcc gagctggcaa cgctgtccta
    12961 cgtagacctg ataagcgaag cgcatcaggc attgtgtagg cagcagaaat gtcggataag
    13021 gcaccgctga ttactgatac accggcagta aattaaagct cgataaaata tgtaccaatg
    13081 cgttgccgac gccaaacacc agaatcagcg taatcatcgg cttgccgccc cagacgcgga
    13141 atttcgggct gccaaagcgt ttacgcgatg cgcgggccag cagtgccgga acaattgccg
    13201 cccagatggt agccgctaaa ccagcataac caatggcgta caggaatcca ttcgggaaca
    13261 gcagaccacc cacaacaggc ggtgcaaagg tcaacaatgc tgttttcaag cggcccatag
    13321 ccgagtcatc gaaaccaaac agatctgcca gatagtcaaa caaacccagc gttacgccaa
    13381 ggaacgaact cgctaccgca aagtttgaga acacgaccag cagaaggtcc aggctacggc
    13441 tgttcagcac gccgcttaat gcctgtacca gcacatcaat attaccgccc ttctctgcaa
    13501 taccgataaa ctccggacgc gggatgttac ccatcgtcgc cagcaaccag atggtataca
    13561 gcgccagtgc catcagcgta ccgtacacca ggcatttcac gatggttttc ggatctttgc
    13621 cgtaatactt catcaggctt ggcacgttac cgtgataacc aaacgacgcc aggcagaacg
    13681 gcaatgtcat cagcagatac ggcgcataag atgcattgct ttctgcaacg ttgaacaatg
    13741 tcgcaggctg cacatgcccc aacaggctgc caaaggtgag gaagaaggta atgactttcg
    13801 cccccagcac aatcgccgtc atgcggctga cggccttagt actcaaccac accacaaacg
    13861 ctaccagcag tgcaaaacca aaacccgccg cccgtgccgg gacgtttagc gacatctctg
    13921 cgaaggtgtg atgcagaatt gaaccactgg cagaaatata ggcataggtc aggatataga
    13981 gcacaaaggc aatggaaata ccgttgacca cgttccagcc tttgcccagc aaatctttgg
    14041 tgatggtgtc aaaactcgaa ccgattcggt aattcaggtt agcttccaga atcatcaagc
    14101 cggaatgcag catacagaac caggtaaaga tcagcgccgc cattgaccag aaaaaccacg
    14161 ccccggacat gaccactggc agagaaaaca tccctgcgcc aataatggtg ccgccgataa
    14221 tcaccacgcc gccaagcagc gacggtgacg tttgggtggt ggttagtgtt gccatgaggg
    14281 cttctctcca gtgaaaaata gtgcgactgc gttgttatgc attgcactgt accagtacgc
    14341 gagtacaaaa gacagaaaaa aagccccgat ggtaaaaatc ggggctgtat atattatttt
    14401 acagattgtg ttcgctgttc agcgatgatt acgcatcacc accgaaacga cgacgaccgg
    14461 tagagtcatc acgacgcgga gcgcggcctt cacgacgttc gccgctaaaa cgacgaccat
    14521 caccacggcc accttcacgg cgttcaccgc tgaagttacg accgccttca cgacgttcgc
    14581 caccgaaacc acgaccaccg ccacgacgct caccgccagt atgcggctgt gcatcgccca
    14641 gtaactgcat gttcatcggc ttgttgagaa tgcgagtgcg cgtaaagtgt tgcagcactt
    14701 cacccggcat acctttcggc agttcgatgg tggagtgaga agcaaacagc ttgatgttac
    14761 caatgtaacg gctgctgatg tcgccttcgt tagcaatcgc accaacgata tgacgaactt
    14821 caacaccatc atcacggccc acttcaatgc ggtacagctg catatcgcca acatcacgac
    14881 gttcacgacg cggacgatct tcacggtcac cacgcgggcc acggtcgtta cgatcgcgcg
    14941 gaccacggtc atcacggtca cggaattcac gtttcggacg catcggcgca tctggcggta
    15001 cgatcagagt acgttcaccc tgtgccattt tcagcagtgc cgcagccaga gtttcgagat
    15061 ccagctcttc accttctgca gtcggctgaa ttttgctcag cagtgcgcgg tattgatcca
    15121 gatcgctgct ttccagctgc tgctgtactt tagcggcgaa tttttccaga cggcgtttgc
    15181 ccagcagttc tgcgttcggc agttctactt ccggaatagt cagcttcata gtacgttcaa
    15241 tgttgcgcag cagacgacgc tcgcggttct caacgaacag cagcgcgcgg ccagcacgac
    15301 ccgcacgacc ggtacgaccg atacggtgaa cgtaagactc agaatccatc gggatatcgt
    15361 agttaactac caggctgata cgctcaacgt ccaggccacg ggctgcaacg tcggtcgcaa
    15421 tcaggatgtc cagacgacca tctttcaggc gttccagtgt ctgttcacgc agcgcctggt
    15481 tcatgtcacc gttcagcgcg gcgctgttgt agccgttacg ctcaagagct tcagccactt
    15541 ccagagtcgc gtttttggta cgaacgaaga taatcgccgc atcaaaatct tccgcttcca
    15601 ggaaacgtac cagtgcttcg tttttgcgca taccccagac agtccagtag ctctggctga
    15661 tgtcaggacg ggtagtcacg ctggactgaa tgcgcacttc ctgcggctct ttcataaagc
    15721 ggcgggtaat gcgacgaatc gcttccggca tggttgcaga gaacagagcg gtctgatgac
    15781 cttccgggat ctgcgccata atggtttcaa cgtcttcgat gaagcccatg cgcagcattt
    15841 cgtcagcttc atccagaacc agaccgctca gtttagagag gtccagagtg ccacgtttca
    15901 ggtggtccag cagacggccc ggagtaccga caacgatctg cggcccctga cgcagggcgc
    15961 gtaattgcac gtcataacgc tggccgccgt acagagcaac cacatttacg ccgcgcatgt
    16021 gtttagagaa atccgtcatt gcttcagcaa cctgtaccgc cagttcgcgg gtcggtgcca
    16081 gcaccagaat ctgtggtgct ttcagctcag gatcaagatt ctgcaacaga ggtaaagaga
    16141 atgctgcagt ttttccgctc cccgtctggg ccatacccag aacgtcgcgg ccattcagca
    16201 gatgtggaat acactctgcc tgaattggag atggtttttc gtaacccaga tcgttaaggg
    16261 cttcaaggat aggagccttc aggcccagat ctgcaaaagt ggtttcgaat tcagccatgt
    16321 agtacgtgtg cctcaaaatt aatggcggcc agtctacata actcatcatg aaattgatca
    16381 gcaattttca ttgaaaagtg tgaaccggct caaagtaggt gtattaacga acaacaacgc
    16441 cctcacccct taaggtgatg gcaatcaaaa aagattacgg gctgatgtgt acgtcagcta
    16501 ttgctggtcc gattctgcca ggtcatcttg gtcctggccc aggagcgata attccaacaa
    16561 tgcgtatcgg tgctcaacaa agttatgaac gttgttggca accgccagtt tgaacagtgc
    16621 cgtggcgctg tccgaatccc ccagacttag gtagtactta cctaaataga agttggtttc
    16681 actgagatgc tcagcgagcg aggtgttatc cgttgcgtcc gccttgagcc tttccattaa
    16741 cgtttgttcg ctaatgttgc ccaggtagaa ctcgacaatg ttccatcccc actgttcctt
    16801 atccgatttt tcgaagtgct gtttcaacac ttctttagcc tgcttctcat cgagcttctg
    16861 ctcggcgaga taaagccaca gactacggaa aggatcattg ggatcgtctt gataaaacgc
    16921 cagcagatca tcttgcgcta acttgtcacg accgccgtaa tataatgcga tcccgcgatt
    16981 caagtgcgcg tagttgtaag ttggatcaag ctcaagtaca gaatcaaacg cttcataggc
    17041 agcatcaaaa ttgcctgcct gcgttaaata tatgcctaag taattgaaca cttcaggcat
    17101 atccggtcgg attgccagcg cttgcgaaaa atcgttacgc gctaatgccc tcagaccgag
    17161 actatcatac aacactccgc gctcatataa aagctgtgcg cgttcgtcat cggttaaagc
    17221 ccgactggca aggatttgtt ccatacgtgc cagaatcact tcctgctgta aagtcggttg
    17281 caatggtacc gcgaggactt cacttttacg ccaggaagta ttactgcatc ctgcaagcgt
    17341 aagtgctgtc gcaacgaaac accagcgcaa aaaaggcttc atttcccact cccgaagacc
    17401 acggttgaat gaacgtcctg ttcccggttg ctaacaaggc gtcctgcccg gttaaaagcc
    17461 ccccgccgca gcggagggca aatggcaacc ttactcgccc tgttcagcag ccggagcttc
    17521 cggtgctgca gcaggttgag actgctcagt cgcttcttta atgctcagac ggatacggcc
    17581 ctggcgatca acttccagaa ctttcaccgg tacttcctga cccatctgca ggtaatcggt
    17641 cactttctca acgcgtttgt cagcgatttg agagatgtgg accagacctt ctttaccgcc
    17701 gccgatggca acaaatgcgc caaagtcaac gatacgggtc actttaccag tgtagacgcg
    17761 gcccacttcg atttctgcag tgatctcttc gatacgacga atagcatgtt tcgctttctc
    17821 gccgtcggtc gctgcgatct tcacagtacc gtcatcttcg atttcgatgg tagtgccagt
    17881 ttcttcggtc agggcacgga taacagagcc gcctttaccg ataacgtctt tgatcttgtc
    17941 cgggttgatc ttgatggtat ggatacgcgg tgcgaactca gagatatcgc cacgcggcgc
    18001 gttgatcgcc tgttccatta cgcccaggat atgcagacgc gcacctttag cctggttcag
    18061 cgcaacctgc atgatctctt tggtgatacc ttcaattttg atatccatct gcaatgcaga
    18121 gataccctcg cgggaacccg caactttgaa gtccatatcg cccaggtgat cttcgtcgcc
    18181 caaaatgtca gacagtacaa cgtagttgtc gccttctttc accagaccca ttgcgatacc
    18241 cgcaacggca gctttgatcg gcacacctgc gtccatcagc gccagagacg cgccgcacac
    18301 ggaagccata gaagaggaac cgttggattc agtgatttca gacacaacac gtacggtgta
    18361 cgggaatttg tccatatccg gcatgactgc cagcacgctg cgcttcgcca gacgaccgtg
    18421 accaatttca cgacgcttcg gagaaccgac catgccggtt tcgcctacgg agtacggagg
    18481 gaagttgtag tggaacagga aggtatcggt acgttcgccc atcagttcat caagaacctg
    18541 cgcgtcacga gcagtaccca gcgttgcggt aaccagcgcc tgcgtttcac cacgggtgaa
    18601 cagcgcagaa ccgtgagtac gcggcagcac gccagtacgc acatccagac cacggatcat
    18661 atctttttca cgaccgtcga tacgcggttc gcctgccagt acgcggctac gaacaacgtt
    18721 tttctcgata gcgtgcagaa tttcacccag ttcgttttcg tccagggttt cgtcttcagc
    18781 aagcagcgtc gcgatggttt cagatttgat gacatcaacc tgcgcataac gctcttgttt
    18841 gtcggtgatg cggtaagcat cgctcaggcg agcttcagcc agtgcagcaa cgcgcgcgtt
    18901 cagcgcttcg tttaccggct ccggctgcca gtcccaacgt ggtttaccgg cttctttcac
    18961 cagttcattg atgttctgaa taacaacctg ctgttgttca tgaccgaaca ctactgcgcc
    19021 cagcatctgg tcttcgctca gcagttcagc ttcagattca accatcagaa cagcggcttc
    19081 agtaccggca acaaccagat ccagtttgct ctctttcagc tcgtcctgag tcgggttcag
    19141 tacgtactgg tcattgatgt aacctacgcg agcagcacca atcggaccat tgaacggaat
    19201 accagacaga gacagtgctg cggaagcacc aatcatcgcg acgatatccg ggttaacttg
    19261 cgggttaaca gaaaccacgg tggcgataac ctgaacttcg ttgacgaagc cttccgggaa
    19321 cagcgggcga atcgggcggt caatcagacg cgcgatcagg gtttcgcctt cgcttggacg
    19381 accttcacga cggaagaagc tacccgggat acgaccagca gcgtaggtac gctcctgata
    19441 gttaacggtc agtgggaaga agtcctgacc tggtttggct tttttctggc caacaacggt
    19501 aacaaatacc gcggtgtcat ccatgctaac cataacagcg gcagtagcct gacgagccat
    19561 catgccggtt tccagagtca cggtgtgttg gccgtactgg aatttacgaa cgatcggatt
    19621 aagcaatgta atatcctttc tctttcttag acagtacctt acggcactgg tgttaatacc
    19681 cgatcttctg cgcatcctcg cgactaatga caaccctaac ccagctctat gtgggtaaag
    19741 cctctcatta gccgcgcgaa cctctgcaac ggaagatcat tcatagcaac aatacattag
    19801 tttccagtga attgctgccg tcagcttgaa aaaaggggcc actcaggccc ccttttctga
    19861 aactcggcag gaattagcga cgcagaccca ggcgctcgat gagctgggtg taacgtgcta
    19921 cgtctttacg tttcaggtag tcgagcagtt tacgacgctg agaaaccatg cgcagcagac
    19981 cacgacggct gtggtgatct tttttgtgct ctgcaaagtg gccctgcagg tggttgatct
    20041 gtgcagtcag cagtgctacc tgaacttcgg tagaaccggt gtcgtttgcg tcacgaccaa
    20101 actcagaaac gattttagct gttgcttcag tacttagaga cattttaaaa ctccaaagta
    20161 tatagaatga aaggacgccg atctctaatt cagcgatccc agtgtacgtt acgcaaagtg
    20221 ttaaacaatt tacgcgacgt taagcggcag tattctactc gtagcgactt gttatcgcaa
    20281 gacggttaac attacgccgg gtattcaacc accaggcgac gaggcgcgac gcggccttca
    20341 tcgtcaattt cgcccatacc gataaacttg ccgttctcac cttctgtaac gcgaaccagt
    20401 ccttccagcg gcgcaccgga tgtacgaact gggttaccat ttttgaagta aacagaagac
    20461 gttaacggaa gattcaccac cgggtagtcc gaagctggac tgtccattgg catcagtaat
    20521 ggatcaagta actccgcagc cggaatatcc tgctgttcgg cttgttcgac cagttcacgc
    20581 agatgttcca gggtcaccat ccgttcaacc ggatatttac ttaccgccag acgacgcagg
    20641 taaataacat gcgcgccaca accgagtttt ttacccaggt catcaatgat ggtgcggata
    20701 taagtgcctt ttgagcagtg aatttccagc tccagctcat tgccttcgtg gcgaataaac
    20761 agcaattcat aaatggtaat cgggcgcgct tcacgcggta cttcaatgcc ctgacgcgca
    20821 tattcgtaca gttttttacc ctgatatttc agtgctgaat acatcgaagg gatctgttcg
    20881 atatcgccac ggaaagtatc cagcgccgcc gccagttgct ctgcgctaaa ggttaccgga
    20941 cgttcttcaa cgatttgtcc gtcggcatca gaagtatcgg tacgctgtcc aagacgcgca
    21001 atgacccgat agcgtttgtc ggagtccagc agatactggg aaaacttcgt cgcttccccg
    21061 aagcaaattg gcaacatgcc agttgccagc gggtccagcg caccggtatg cccggcacgg
    21121 ttggcgttat aaatccgttt cactttttgc agcgcatcat tgctggacat accctgcggt
    21181 ttatccagca acaaaacgcc gttaatgtcg cgaccgcgac gacgaggacg actcattagt
    21241 cctccttgct gtcgtccggg ttaacacgac gttcttcgtc atgtttgacc acgctggtca
    21301 ccaggtttga catgcgcatc ccttcaacca gagagttgtc gtagaagaag gtcagttccg
    21361 gcacgatacg caggcgcatc gctttcccca gcaggctgcg gatgaaacca gaagcttctt
    21421 gcaacgcttt gatgcccgct ttaaccgcgt cttcatcttt gtcgttgagg aacgtcacat
    21481 atactttggc atacgccagg tcgcgagaca tttcgacacc ggaaacggtg gtcatcatgc
    21541 ccaggcgagg atctttaatt tcacgctgca ggatgagagc gatctctttt tgcatttcct
    21601 gcgctacgcg ctgcgggcga ccaaattctt tcgccataat aaattctcct gacaaaaaag
    21661 ggactgttag ccccttttta aaattaattt caggtggaag ggctgttcac gttggcctga
    21721 taagacgcgc cagcgtcaca tcaggcaatc catgccggat gcggcgtaaa cgccttatcc
    21781 cgcatggaac cctaaaaacc ttaagcgatg gtacgttgga tctcgatgat ttcgaatact
    21841 tcgatcacat cgccagtgcg gacgtcgttg tagttcttaa cgccgatacc acattccata
    21901 ccgttacgga cttcgttaac gtcatctttg aagcggcgca gggactccag ctcgccttcg
    21961 tagataacca cgttgtcacg cagaacgcgg atcgggttgt gacgtttaac cacaccttcg
    22021 gtaaccatac agcctgcgat ggcaccaaat ttcggcgatt tgaacacgtc acgaacttcc
    22081 gccagaccga taatctgctg tttcagttcc ggagacagca taccgctcat cgccgctttc
    22141 acttcgtcaa tcaggttata gatgacggag tagtaacgca gatctaggct ttccgcttca
    22201 atcactttac gtgcagaggc atcagcacgt acgttgaagc caaccaggat ggcgttggac
    22261 gccgcagcca gggtggcgtc ggtttcggtg ataccaccta cgccagaacc gatgatcttc
    22321 actttaactt cgtcagtaga cagtttcagc aaggagtcgg agatcgcttc cacagaaccc
    22381 tgtacgtctg ccttcaggac gatgttcact tcgtgaactt cgccttcggt catgttggcg
    22441 aacatgttct cgagtttaga tttctgctga cgcgccagtt taacttcgcg gaatttaccc
    22501 tgacgataca gtgcaacttc acgcgctttc ttctcgtcac gtacaacggt aacttcatca
    22561 cccgcagccg gtacgccgga caggccgagg atttccaccg gaatggacgg acccgcttcc
    22621 agcacttcct gacccagttc gttacgcatc gcacgaacac gaccgtattc gaagccacac
    22681 agaacgatat cgcccttgtg cagagtacct tcacgtacca gaacggtagc aaccggacca
    22741 cgacctttat cgaggaagga ttcgataacc gcaccgctcg ccataccttt acgtaccgct
    22801 ttcagctcca gaacttccgc ctgcagcagg atagcgtcca gcagttcatc gatgccggta
    22861 cccgctttcg cagatacgtg tacgaactgg ctttcaccgc cccactcttc tggcaggatg
    22921 ccatactggg agagttcgtt cttaacacga tccggatcgg cttctggttt atcaatcttg
    22981 ttcactgcaa ccaccaccgg tacctgcgcc gctttcgcgt gctggattgc ttcgatggtc
    23041 tgcggcatca cgccgtcgtc ggcagcaaca accaggacta cgatgtccgt tgcctgcgca
    23101 ccacgagcac gcattgaagt aaacgcggcg tgccctgggg tgtccaggaa ggtgatcatg
    23161 ccgttttcag tttcaacgtg gtatgcacca atgtgctggg taatgccgcc cgcttcgcca
    23221 gaggccactt tcgttgaacg aatgtagtcc agcagagagg ttttaccgtg gtcaacgtga
    23281 cccatgatgg tcacaaccgg cgcgcgcggt tcagccgcag cccccgtgtc acggtcgctc
    23341 attaccgcct cttccagctc gttttcacga cgcaggataa ctttgtggcc catctcttca
    23401 gcaaccagct gtgcggtttc ctgatcgata acctggttga tggttgccat tgcgcccagt
    23461 ttcatcatcg ctttgatgac ctgagagcct ttaaccgcca tcttgttcgc cagttcgcca
    23521 acggtgatgg tttcgccgat cacaacgtca cggttaacgg cctgagctgg cttctggaag
    23581 ccttgctgca gggaagaacc tttacgtttt ccgcctttac ctccacgtac tgctgcgcga
    23641 gcttcttcac gatcagcttt tgattcagcg tgtttgttgc ctttcttcgg acgcgctgct
    23701 ttcgcgttac gaccacggcc acggccgcct tcgacttcac gatcgctttc gtcttctgcc
    23761 tggcgagcat gttgagaagt agtgacgtga taatcgctgg aatcttcagt cggttccgcg
    23821 ttatcagtcc atttgttttc ttccgccata cgacgtgctt cttcagcaac gcgacgtgct
    23881 tcttcttcga gtttacgacg cgcttcttct tcagctttac gcttgagctc tgcagcttcc
    23941 tgctcacggc gggctttttc agcctgggcg tttttagtca tatcgtcttg ttgattgctc
    24001 actttgtctt tttccgcagc ttcacgtttc gcttgttcag cagcttcacg cttagcttgt
    24061 tctgcggcct cacgttcagc tttttgttgc gcctcgcgtt tagccgattc ttctgcctca
    24121 cgacgggctt gctcttccgc tgcaaggcgt tcagcctctt gcggatcgcg tttcacaaag
    24181 gtgcgtttct tgcggacttc gatttgtacc gatttgcttt ttccaccggt accaggaatg
    24241 ttaagggtgc tgcgtgtttt acgttgcagc gtcaatttgt ccgggcctga atttttctga
    24301 ttcaggtggt caatcaaagt ctgtttctct tgtgcggaca cagagtcgtc agcagacttc
    24361 cggatacctg catcagcaaa ttgctgtacc aggcgttcca cggaggtctg tcgctctgcg
    24421 gccagcgttt taatcgttac atctgtcatg ctgttccttc ctgctacagt ttattacgct
    24481 tcgtcaccga accagcaaat attacgggca gccataatca gtgctccggc tttttcgtcg
    24541 gtcacccctt cgatatcagc cagatcatca atgccctgtt cggcgagatc ttccagcgta
    24601 caaacgccac gggcggccag tttgaatgcc aaatcacgat ctatcccttc aaggttcagc
    24661 agatcgtcag ccggtttgtt atcaccgagg ctttcttcct gggcctgtgc aatggtggcc
    24721 agtgcatttt tagcacgctc gcgcagtgct tcaacggtcg gctcatcaag gccttcgatt
    24781 tccaacagct ctttcatcgg cacataggcc agttcttcca gcgtcgagaa gccttcttct
    24841 accagaacag tcgcgaagtc ttcgtcgatg tcgagatatt tggtgaaggt gtcgatcgct
    24901 gcgtgcgctt ccgcctgatg cttagcctgc aggtcgtcaa cggtcatcac gttgagttcc
    24961 caaccgctca gctgcgaagc cagacgcacg ttctgaccgt tacggccaat cgcctgcgcc
    25021 aggttaccgg cttcaacggc gatatccatg gtgtgtttat cttcatccac cacgatagaa
    25081 gcaacgtctg ccggtgccat tgcgttaatc acaaactgcg ccgggttatc atcccacagg
    25141 acgatatcga tacgctcgcc gcccagttca gtagaaaccg cctgaacacg cgcgccacgc
    25201 atacctacac aggcacctac cggatcgata cgtttatcgt tggttttcac cgcgattttc
    25261 gcacgagaac ccggatcgcg agccgctgct ttaatttcaa tcacttcttc gccgatttct
    25321 ggcacttcaa tacggaacag ttcgatcagc atttccggct tggaacgagt gacgaacagt
    25381 tgcgcgccac gcgcttccgg gcgaacggaa tagagcacgc cacgaacgcg gtcgccaggg
    25441 cggaagtttt cacgcggcag catatcttcg cgcaggatca cggcttcagc attgttgccc
    25501 agctccagag agatgttgtc gcggtttact tttttcacca cgccggtgat gatttcacct
    25561 tcgtgttcac ggaactgatc aaccaccatc gcacgttcgg cttcacgcac tttctgcacg
    25621 ataacctgtt ttgccgtctg ggtagtgata cggtcaaagg taacagactc aatctgatct
    25681 tcaacgtaat cgcccaggtt caggctttca tcttcataac gtgcggcttc aagggtgatt
    25741 tccttggtcg gctgggtgac ttcatcaaca actaaccagc gacggaaggt gtcaaaatca
    25801 ccgcttttgc gatcgatctg tacgcggacg tcgatctctt gttcatattt tttctttgtt
    25861 gctgtcgcca gcgcgctttc caatgcttcg aaaatcttct cgcgaggtag cgccttttca
    25921 ttggatacgg cttcaactac agccaaaatt tctttgttca tcgcgggctt ttcacctcat
    25981 ccagactatt aaaagtgggg aaccaggttc gccttctgga tattactcag cgcgaacact
    26041 tcatctttac cttcgacggt aactgtgatc atttcaccgt ctaccgcttt gataacgccc
    26101 tgccatttac gacggttttg taccgccata cggagaacca gagtcacctc ttctccgaca
    26161 aaacgggcgt agtgttcagc cgtgaacagt gggcgatcga gacccggtga ggagacttcc
    26221 aggttataag caacggtgat gggatcttca acatccagca cagcacttac ctggtggctc
    26281 acatcagcac aatcatcaac attgatgcca tcttcactat caatatagat gcgcagtgtg
    26341 gatgtgtgac cgcgaataaa ttcgatgcca accagttcaa aacccagggc ctcaactggc
    26401 gcagtaatca tctctgttaa tttttgctct aatgtggaca agcccacccc caagacataa
    26461 aaaaagggcc taaagcccag ttattctgta gtcagataac aaaaaacccc gataaatcgg
    26521 ggctttatat aactgaaccc tataatcgca actgcggtct ggagcacttt ccagaaggat
    26581 tttttcaaat cccactacga aggccgaagt cttcacagta tatttgaaaa aggactctaa
    26641 gggaaagtgg ttgcgggggc cggatttgaa ccgacgacct tcgggttatg agcccgacga
    26701 gctaccaggc tgctccaccc cgcgcctgaa actcggcaaa ttctactcgt tttgggtaaa
    26761 agatgcaaat actgctggga tttggtgtac cgagacggga cgtaaaatct gcaggcatta
    26821 tagtgatcca tgccacattt tgtcaacgtt tattgctaat cacgtgaatg aatatccagt
    26881 tcactttcat ttgttgaata cttttgcctt ctcctgctct cccttaagcg cattatttta
    26941 caaaaaacac actaaactct tcctgtctcc gataaaagat gattaaatga aaactcattt
    27001 attttgcata aaaattcagt gagagcggaa atccaggctc atcatcagtt aattaagcag
    27061 ggtgttattt tatgacgacg attctcaagc atctcccggt aggtcaacgt attggtatcg
    27121 ctttttctgg cggtctggac accagtgccg cactgctgtg gatgcgacaa aagggagcgg
    27181 ttccttatgc atatactgca aacctaggcc agccagacga agaggattat gatgcgatcc
    27241 ctcgtcgtgc catggaatac ggcgcggaga acgcacgtct gatcgactgc cgcaaacaac
    27301 tggtggccga aggtattgcc gctattcagt gtggcgcatt tcataacacc accggcggcc
    27361 tgacctattt caacacgacg ccgctgggcc gcgccgtgac tggtaccatg ctggttgctg
    27421 cgatgaaaga agatggcgtg aatatctggg gtgacggtag cacctataaa ggaaacgata
    27481 tcgaacgttt ctatcgttat ggtctgctga ccaatgctga actgcagatt tacaaaccgt
    27541 ggcttgatac tgactttatt gatgaactgg gcggccgtca tgagatgtct gaatttatga
    27601 ttgcctgcgg tttcgactac aaaatgtctg tcgaaaaagc ctactccaca gactccaaca
    27661 tgcttggtgc aacgcatgaa gcgaaggatc tggaatacct caactccagc gtcaaaatcg
    27721 tcaacccgat tatgggcgtg aaattctggg atgagagcgt gaagatcccg gcagaagaag
    27781 tcacagtacg ctttgagcaa ggtcatccgg tggcgctgaa cggtaaaacc tttagcaacg
    27841 acgtagaaat gatgctggaa gctaaccgca tcggcggtcg tcacggcctg ggcatgagcg
    27901 accagattga gaaccgtatc atcgaagcga aaagccgtgg tatttacgaa gctccgggga
    27961 tggcactgct gcacattgcg tatgaacgtc tgttgaccgg tattcacaac gaagacacca
    28021 ttgagcagta tcacgcgcat ggtcgtcagt tgggccgtct actgtaccag gggcgttggt
    28081 ttgactccca ggcgctgatg ctgcgtgact ctctgcaacg ctgggttgcc agccagatca
    28141 ctggtgaagt taccctggag ctgcgccgtg ggaacgatta ttcaatcctg aataccgtct
    28201 cagagaacct gacctacaag ccagagcgtc tgacgatgga aaaaggcgac tcggtgttct
    28261 cgccagatga tcgtattggt caattgacca tgcgtaatct ggatatcact gatacccgag
    28321 agaaactttt tggttatgcc aaaactggcc tgctctcctc ctctgccact tcaggcgtgc
    28381 cgcaggtgga gaatatggaa aacaaaggcc agtaattcga catcaaccct gcccttcagg
    28441 gggggggtta ccttgcttat cctctgtaaa ctcctttctg aacatcacat aatcgaaaac
    28501 atcatggttt gcatccacaa cccgtgagtc tcctttatag tgtgcaatca cttcctcaag
    28561 cgtttgcggc tgttccggct ttgttacccc catccacgca ttaataaggt aattattgta
    28621 agctgtcgaa aagatgttgt tttccgttgt gcgatccacg ccatccccaa gaacggggct
    28681 ataccagata aacatcggga catgatatgc ctgctggcta gcctccctgc ctccatgaaa
    28741 atagacgttc ttcttcgttg ggtcacgttc caggccgtgg tcggcaaaat acatgaccga
    28801 ggcgcggcga tcttttaata attcaaaaac ctgacctagc aaactatctg tgtaatgaat
    28861 ggagttgtca tagcaggcat cctgatcgtc ctgcggttga aacacggcgc tggattgcgg
    28921 ataggcgcta caagccggtt catggcttcc atttaaatga agaacaatca gtttcttttg
    28981 ctgcgtattt tgctgtaatg cttgcgataa atgcggcaac aacaattcat caaatcctct
    29041 gacataaact gtttccatgg cgcgcatggc gatactggta actgcagtac cattctgccg
    29101 aaaagcggat tgcgagctta gccagaaagt ctgaaatcct gcttgattag ccatattaat
    29161 aatgttgtcg gggtaattat gaatgtcatg actcaaaaca gaatcagcag ttaaagaaag
    29221 gggaaccgac agcgcagtgt aaggtgcgct gcttattgct tgattaaaca gtttgatctg
    29281 ttttctttgt gcttcaactt gcggtgtcgt agagcgtgta tatccataca aagacatatt
    29341 gtcgacacgt acagactccc ccacaatcaa cacgtaggta tcaatacctg tatccctgac
    29401 tgataattga aaatacggca ccgtgtttgc aattgagagt aatctttgat gctctttcgc
    29461 tgctaaagca aaatagttga gattgaaaaa cggcgtatag gtagcaaatc gcgacgctag
    29521 tatatatgga ctgaacgttt ttttattttt tgcatcttta taagcaaatt gacaagcgga
    29581 aaataaactg cccgaaatga caatcagcaa taatattcct gtcacttttt ttgtcggcaa
    29641 ggaaacatca tattttatta ttactgccca aaaaagaagg gataaaaaag caaaggcaca
    29701 tagataaggg atatacatcc ccagcatttt gacaacttca tccggatcac tctggagcac
    29761 actaatcgca aatccatcat tgaaagttgt accaaaggta caccatgaat agaggctaat
    29821 actcatgtct gccgcagtca gtaacacaaa tggtgcggca acaagcaggc gaagcggaag
    29881 ggatgatata cgttttacaa ccaggatggt caggacgaag aacagcaatc gctgaaccat
    29941 atgcgcgccg gaagaggcga ctaagttcgt aataccaaaa acaataacac aaagatacaa
    30001 caaccaatga gatttaaaac ttctagcaaa tttgttgaat actgtcatcc agaaatccaa
    30061 gttcacaacc aatataaaca attatcaaca atgttcaatt ttatatcaga catgtttttc
    30121 aactctgatc catatcagac cgaaacactg ttagtttttt ctttttaaat gatgcggcca
    30181 ttgcgttctc agtaattaaa taacattatc aatgcgtctc taaacattac gcagaacgta
    30241 gccatcagta gttatactga caggagcagg atggtttatc gagaagtaaa catatccgta
    30301 ttcgtaccgg aactggagtt gacacaataa agtgccaatt atgtcagcag aagggaaaag
    30361 tttataacta aggcgtaccg gcaccatcgt ttcaaggtac cagctacgag taaagcaact
    30421 ggacgagata cagatacctg acaaccattc ctcagaccag gaccaaaacg aaaaaagacg
    30481 cttttcagcg tctcttttct ggagtttggt accgaggacg ggacttgaac ccgtaagccc
    30541 tattgggcac taccacctca aggtagcgtg tctaccaatt ccaccacctc ggcacggata
    30601 ctacttttta gttcgggata tcgctggtcg gcttagccgg agcagctggt tgagtttgtt
    30661 cggttttcgc cggtgcactc agattttccc attcgctacc tttattggtt ttgttgctgt
    30721 tgatgttacc cagcaccaga ctgatgatga agaataacgt tgccagcagc gccgtcatgc
    30781 gggtcatgaa gttaccagaa ccacttgaac caaacagcgt agcggaagcg cctgctccga
    30841 aggaggctcc catatcagcg cctttacctt gctgcagcat gatcagacca acaaggccaa
    30901 ttgccacaat aaggaaaact accaaaagag cttcgtacat aatcaacctg ttccttgcgg
    30961 agttgccgcg taccaatgct tcaaccaata aagcgggagt ttttaatctt tcccactgaa
    31021 gcgggtgtga atactaacca aagcgaatga ccttcgcaag ggcaatttta tcgcattgta
    31081 tcaactgcgg aaaaaaacag caaaaccgat gtgttcgctg agaaaaaagg cgacaatcgc
    31141 cgccttttta gccagtcatt tatcgtttta aacggctttt actgcatcgg cgatgcggtg
    31201 tgcaaattca gtcacctgcg cttcgtcttc gccttccacc atcacgcgaa ttaacggttc
    31261 ggtgccggat ttacgcagca acacgcgtcc acggttgccc agcgcagctt caacctctgc
    31321 ggtcacggct ttaactgact catgctcaag cggatcgccg ctacctgcgg tgtaacgcac
    31381 gttaaccaga atctgcggga acattttcat gccgctgcaa aggtcgtgca ggctcatatg
    31441 gttacgtgcc atcgccgcca gcacctgcaa gccagcaacg atgccgtcac cggtagtggt
    31501 tttatccagc aggatcacat gaccggaatt ctctgcaccg atacgccagc ctttctcctg
    31561 cattttttcc agtacgtagc ggtcacccac tttcgcgcgc gcaaatggaa tacctaactg
    31621 tttcagcgcc agctcaagcc ccatgttact catcaatgta cccacagcac caccacgcag
    31681 ctggccctga cgaagacctt cacgcgcgat gatatacatg atctgatcac catcgacttt
    31741 attgccttca tggtcaacca taatcacgcg atcgccgtcg ccgtcgaagg caataccgag
    31801 atccgctttt tcagccagca cacgagcctg gagcgcgcga acgtcggtag cccccacttc
    31861 ggcattgatg tttacaccgt tcggctcaca accgatagcg ataacgttcg cccccagttc
    31921 acgcagcacg ttcggcgcga tgtgataagt cgcaccgttt gcgcaatcca ccacaatctt
    31981 cagttcgctg aggctaagtt cgttcgggaa cgtggctttg caaaactcga tatagcgacc
    32041 cgcagcatca acgatacggc tggctttacc cagttctgcc gaatcaacac agctgatctc
    32101 tttttccatt tccgcttcga tggcctcttc taccgcatcc ggtagtttgg tgccgtcgat
    32161 agagaaaaat ttaatgccat tatcgtagaa cgggttatgc gatgcagata tcacaattcc
    32221 ggcctctgcg cggaaggtac gcgtcagata agccacggcc ggtgttggca tcgggccagt
    32281 gaagagtgcg gaaaggcccg ctgccgccag acccgcttcc agtgctgact ccagcatata
    32341 gccagaaata cgcgtgtctt tactaataat gatcttacgg gagccgtggc gcgccagcac
    32401 tttacccgcg gcccaaccca gcttaagcac aaaatcaggt gtgatcggcg catcccctac
    32461 acgaccacga atcccatcgg taccgaaata tttacgatta ctcatagcgt ttgttttcct
    32521 ttgcagacag agtggcttcc accacccgca tcgcttctac ggtttctttg acgtcatgaa
    32581 cacgaataat gtgcgcgcct tgcattgcgg caatgaccgc acaggccaga ctaccgctca
    32641 ggcgctcgga cggccccacg ttcagcagct gcccaatcat cgattttcgt gacataccta
    32701 ccaacagcgg caggttgaaa tggtgaaatt cagccaggcg cgccagtaat gaatagttat
    32761 gggagagatt tttaccgaaa ccgaatccgg ggtcgagcaa caatttctct tttgcgatac
    32821 ccgcctgctc gcaacgtgct atttgctcaa taaagtagcg attcacttct gcaaagacat
    32881 cgtcatactt cggagcttcc tgcatggttt ttggatttcc ctgcatatgc atcagacaaa
    32941 ccggtaaacc ggtttctgcc gccgcctcca gagcgccagg ttcggaaagg gagcggatat
    33001 cgttaataat gtgagcgcca actttcgctg actcacggat gacttctggt ttggatgtat
    33061 ctaccgagag ccagacttcg aagcgttgag caattgcctc aaccacagga ataacacgtt
    33121 gcaactcttc ttcaacgcta acttccgccg cccctgggcg cgtggactcg ccaccaacgt
    33181 caatgatcgt cgcgccagcg ttgatcatca gattcgcatg tttcaccgca tctatcagcg
    33241 agttatgcgt gccaccatcc gaaaaggaat caggcgtgac gttgaggatc cccattacgt
    33301 gaggatggct aaggtccagt gaagtgccct gggcaaagag tttcatggtg ttatccctgg
    33361 tatgaattga taagaaaaaa ccccggagca cgccccgggg ttttcggtac aaatacagtc
    33421 atctgatgcg ggaacttact tgtcgcctaa ctgctctgac atggtgttac ccgggttcgg
    33481 cgtacgcggt tcatcaaccg gacgaggagc ctttggacta ccattgtcgc cagaattgtt
    33541 agaagcgcct ggttcttccc agcccgctgg cggacgtaca tcgcgacgtg ccatcaggtc
    33601 atcaatctgc ggtgcgtcga tagtctcata tttcatgaga gcatctttca tcgcatgcag
    33661 aatatccata ttgtcggtca gaagctgacg cgcacgatta tagttacgct caatcagtgc
    33721 tttcacttcc tggtcgatga tacgtgcagt ttcatcggac atatgtttcg ctttcgctac
    33781 gctacggccg aggaacactt caccttcttc ttccgcgtac agcagtggac ccaatttctc
    33841 agagaagccc cactgagtca ccatattacg cgccaggttg gtcgcaactt taatatcgtt
    33901 ggacgcaccg gtagaaacat gttccggccc gtagatgatc tcttctgcca gacgaccacc
    33961 gtacagcgta gaaatctggc tttccagttt ctgacggctg gcgctgattg cgtcgccctc
    34021 aggcaagaag aaagtcacac ccagcgcacg accgcgtggg ataatcgtca ctttgtgcac
    34081 cggatcgtgt tccggcacca agcgaccgat aatcgcatga cccgcttcgt ggtaagccgt
    34141 cgattctttc tgcgcttccg tcatcaccat ggagcgacgt tccgcaccca tcatgatttt
    34201 atctttcgct ttttcgaact caatcatcga cacaacgcgt ttgttgccac gagcagcgaa
    34261 cagtgccgct tcgtttacca ggttcgccag gtcagcaccg gagaaaccag gagtaccacg
    34321 ggcaatgatt gccgcgtcga tatcgggtgc caatggtacg cgacgcatgt gaactttcag
    34381 gatctgctca cgaccgcgaa catctggcaa gccaaccaca acctgacggt cgaaacggcc
    34441 aggacgcagc agggctgggt caagaacgtc cggacggtta gtcgcggcga taacgatgat
    34501 accttcgtta ccttcgaagc catccatctc aaccagcatc tggttcagag tctgttcacg
    34561 ttcatcgtga ccaccgccca gaccagcgcc acgctggcgg cctacggcgt cgatttcatc
    34621 gataaagatg atgcacggtg ccgctttctt cgcctgttcg aacatgtcac gaacacggga
    34681 tgcacccaca ccgacgaaca tttctacgaa gtcagaaccg gagatagtaa agaacggaac
    34741 tttcgcttcg cctgcaatcg ctttcgccag caacgtttta ccggtacccg gaggaccgac
    34801 catcaggacg cctttcggga tcttaccgcc gagtttctgg aagcggctcg gctcgcgcag
    34861 atactctacc agttcagcaa cttcttcttt tgcttcgtcg cagcccgcaa cgtcagcaaa
    34921 ggtcgttttg atctgatctt ccgtcagcat gcgcgctttg ctcttaccaa acgacatggc
    34981 acctttgcca ccgccgccct gcatttgacg catgaagaag atccagacac caatcagcaa
    35041 cagcatcggg aaccaagaga tgaagataga agccagcagg cttggttctt caggcggttc
    35101 accgacaacc ttgacgttct tggtcaacag gttatccagt aatttcggat cctgaaccgg
    35161 aatgtaagtg gtataacggt tactatcttt cttggtaacg ttgatttcac gtccgttgat
    35221 acgcgcttca cgaacctggt cgttattgac ctcttgtagg aaggtagagt aatccacctt
    35281 acggccatta gactcgctgg gcccaaagct ctggaatact gacatcagca caacggcaat
    35341 gaccagccag agtattaggt ttttcgccat gtcactcaag ggattaacct cttattacaa
    35401 ctgtgttaaa aacagcgtca ggatactcta tatccagcat ctttcaaact ttcgtctgaa
    35461 atctcccggt tagggtttac gcccggtcgc tacaatatac acttcccgcg aacgtgcacg
    35521 agaagagtcc ggcttacgaa ctttgacctt cgtaaacagg gagcgaattt cccttagata
    35581 ctcatcgaaa ccttcgccct ggaacacctt cactacaaaa ctgccacctg gcgctaatac
    35641 atcacgacac atttctaacg ccagttccac cagatacatg gcacggggga tatccaccgc
    35701 cggtgttccg ctcatgtttg gtgccatatc ggacatgaca acctggactt tgctgtcgcc
    35761 aacgcgctcc agcagtgctt tcatcaccag ttcatcacga aaatcgccct gaagaaagtc
    35821 cacaccaacg ataggatcca taggtaaaag atcgcaagcg atgatgcggc ctttgccgcc
    35881 aatttgggtg accacatatt gtgaccaacc acccggagca gcaccaaggt cgacaaccgt
    35941 cattcccggt ttaaagagtt tgtcactttg ctgtatttca tcaagtttaa accaggcacg
    36001 ggaacgtaac ccctttttct gtgcctgttg aacatattta tcgctaaagt gttcctgaag
    36061 ccagcggctg gagctggcag aacgcttctt acctgtcatt taactttccc atggggataa
    36121 ctcatcgtaa ccaattgcgt aaatttttac gcgcctattt ggtgatatat gggagatggc
    36181 ggtagaatga cccgttttca atcccaacgt aagcaaaaaa tacgatgaat ctgagtacta
    36241 aacaaaaaca gcacctgaaa ggtctggcac atccgctcaa gccagttgtt ctgcttggca
    36301 gtaatggttt gaccgaaggg gtgctggccg agattgaaca agcgttagag caccatgaac
    36361 tcatcaaggt gaaaatcgcc accgaagatc gcgaaacaaa aaccttgatc gtggaagcta
    36421 tcgtgcgcga aaccggcgcc tgtaatgtac aggtcatcgg taaaacgctg gtgctttatc
    36481 gcccaactaa agaacgtaaa atctcgctgc cacgctaaga ttatcctaaa gttacacaca
    36541 tttgctgtgt aaaacgaggg gttttccgca ggcaggagag caaaatgcca cgctctgttc
    36601 gttgataaaa ggccgcatag cggccttttt cctttcttta caatacatca acatcttgat
    36661 gtattgggta attcttacag gtattccacc ttaattactt caaattctac ttcgccgccc
    36721 ggcgttttga tgaccacaac atcatcttct tctttgccga tcaggccacg agcaataggc
    36781 gagtttacag aaatcaggtt ttgtttaaag tcagcttcgt catcgccaac gatgcgataa
    36841 gtctgttctt cgtcagaatc cagattcagc accgttacgg tagcaccaaa aataacgcgc
    36901 ccattgttgg gcattttggt gacatcaatc acctgcgcgt tcgacagctt ggcttcgatg
    36961 tctttaatac ggccttcgca gaaaccctgc tgttcacgag ctgcgtggta ttcggcgttt
    37021 tctttcaggt cgccatgctc acgcgcttcc gcgatagcag caatgatttc aggacggcgc
    37081 acagatttca gaaaatccag ctcttcgcgt aatttttcag cgccgcgtaa ggtcatcgga
    37141 atagcttgca tttgttatac ctcttgaata ttcctgatgg ggcaagtctt cacccacccc
    37201 ggctgttcgg cctgcccggc ataactcctc accgggacca gaagcaaaaa aataccgacc
    37261 cgggtacaag tcccaggtca gctacaattc acattttgat agtcatttta ccctgaagtt
    37321 cccgaagggt catcgtttac tttatagggc gttgcgccgt agtatgacgg ctcgattcca
    37381 ggttgttagc gcgagattat gcgattttcc agatttatca tcggattgac cagctgtata
    37441 gcgttcagtg ttcaggccgc gaatgttgat gagtacgtta ctcaactccc cgctggtgcc
    37501 aaccttgccc tgatggtgca aaaagtcggc gcgtcggccc ccgctattga ttaccacagt
    37561 cagcagatgg cgctgcccgc cagtacgcag aaagtgatta ctgcgctggc ggcgttgatt
    37621 caactcggcc ccgattttcg tttcaccacg acgcttgaaa ccaaaggcaa tgtggaaaac
    37681 ggcgtactta agggtgactt agtggcgcga tttggtgccg atccgacgtt aaaacgtcag
    37741 gatattcgca atatgatcgc gactttgaaa aaatctggcg tcaaccaaat cgatggcaat
    37801 gtgttgatag atacctccat tttcgccagc cacgataaag cccccggctg gccatggaat
    37861 gacatgacac aatgctttag cgctccgcct gccgctgcca tagttgaccg caactgtttc
    37921 tccgtctcgc tctacagtgc cccaaaacct ggtgatatgg cttttatacg cgtggcatct
    37981 tattaccccg ttacgatgtt cagccaggta cgcaccctcc cccgaggttc tgccgaagcg
    38041 caatactgcg aactggatgt cataccaggc gacctgaacc gctttacgct gacgggatgc
    38101 ctgccacaac gttctgagcc gctcccgttg gcttttgccg tgcaggatgg agccagctat
    38161 gccggggcaa ttctgaaaga tgagttaaaa caggcaggta tcacctggag cggaacactg
    38221 ctgcgccaga ctcaggttaa cgaacctgga acggtagttg ccagtaaaca gtcggccccg
    38281 ttgcacgatc tgcttaagat tatgctgaaa aagtcggaca acatgatcgc cgatacggtt
    38341 ttccgcatga taggccatgc gcgcttcaat gtgcctggaa catggcgggc cgggtcggac
    38401 gccgtgcgtc agatcctgcg ccagcaagcc ggtgtcgata ttggaaacac cattattgcc
    38461 gatggttcag ggctttcgcg gcataacctg attgcccccg ccaccatgat gcaggtgttg
    38521 caatacattg cccaacacga caatgaactt aactttatct ccatgctgcc gctggcgggc
    38581 tatgatggct ctttgcagta ccgtgcaggt ctgcatcagg cgggcgtgga tggaaaagtc
    38641 tcagcgaaaa ccggttcgtt gcagggggta tataacctgg cgggattcat taccacagcg
    38701 agcgggcaac gaatggcgtt tgtacaatat ctttctggct atgcagtaga accggcggat
    38761 cagcgtaatc gccgtattcc gttagtgcgt tttgaaagcc gtttgtataa agatatttat
    38821 cagaacaatt agtcaaaaag aaaccccggc acatgg
//
LOCUS       DAJVUY010000017        37820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.017, whole genome shotgun sequence.
ACCESSION   DAJVUY010000017 DAJVUY010000000
VERSION     DAJVUY010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.017"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..378
                     /locus_tag="OQQ72_000819"
     CDS             <1..378
                     /locus_tag="OQQ72_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2010638.1"
                     /translation="ICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDEKF
                     MNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSHRDFLNLKEIKLEHPLPSIKLYI
                     SYNKSSLNNLVFSRFIDRLNESF"
     gene            525..2042
                     /locus_tag="OQQ72_000820"
     CDS             525..2042
                     /locus_tag="OQQ72_000820"
                     /inference="COORDINATES: protein motif:HMM:NF014273.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HCS2010639.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     HLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEDDRIKAINEIRMAIHQ
                     VSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDK
                     NAMEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQIT
                     AMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
     gene            complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="OQQ72_000821"
                     /pseudo
     CDS             complement(2043..3192)
                     /gene="ybdL"
                     /locus_tag="OQQ72_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            3301..4389
                     /gene="hcxA"
                     /locus_tag="OQQ72_000822"
     CDS             3301..4389
                     /gene="hcxA"
                     /locus_tag="OQQ72_000822"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HCS2010640.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            complement(4399..4596)
                     /locus_tag="OQQ72_000823"
     CDS             complement(4399..4596)
                     /locus_tag="OQQ72_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS2010641.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="OQQ72_000824"
     CDS             complement(4778..6883)
                     /gene="cstA"
                     /locus_tag="OQQ72_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HCS2010642.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            complement(7064..7477)
                     /gene="entH"
                     /locus_tag="OQQ72_000825"
     CDS             complement(7064..7477)
                     /gene="entH"
                     /locus_tag="OQQ72_000825"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HCS2010643.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            complement(7480..8226)
                     /gene="entA"
                     /locus_tag="OQQ72_000826"
     CDS             complement(7480..8226)
                     /gene="entA"
                     /locus_tag="OQQ72_000826"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
                     EntA"
                     /protein_id="HCS2010644.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            complement(8226..9083)
                     /gene="entB"
                     /locus_tag="OQQ72_000827"
     CDS             complement(8226..9083)
                     /gene="entB"
                     /locus_tag="OQQ72_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HCS2010645.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW
                     WKLLSREVK"
     gene            complement(9097..10707)
                     /gene="entE"
                     /locus_tag="OQQ72_000828"
     CDS             complement(9097..10707)
                     /gene="entE"
                     /locus_tag="OQQ72_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase EntE"
                     /protein_id="HCS2010646.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            complement(10717..11892)
                     /gene="entC"
                     /locus_tag="OQQ72_000829"
     CDS             complement(10717..11892)
                     /gene="entC"
                     /locus_tag="OQQ72_000829"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HCS2010647.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVLASSPLGEWRETGVKLSTMLNVFGLH"
     gene            12267..13223
                     /gene="fepB"
                     /locus_tag="OQQ72_000830"
     CDS             12267..13223
                     /gene="fepB"
                     /locus_tag="OQQ72_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS2010648.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLSGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            complement(13227..14477)
                     /gene="entS"
                     /locus_tag="OQQ72_000831"
     CDS             complement(13227..14477)
                     /gene="entS"
                     /locus_tag="OQQ72_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HCS2010649.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWLVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            14588..15592
                     /gene="fepD"
                     /locus_tag="OQQ72_000832"
     CDS             14588..15592
                     /gene="fepD"
                     /locus_tag="OQQ72_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HCS2010650.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            15589..16581
                     /gene="fepG"
                     /locus_tag="OQQ72_000833"
     CDS             15589..16581
                     /gene="fepG"
                     /locus_tag="OQQ72_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HCS2010651.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            16578..17393
                     /gene="fepC"
                     /locus_tag="OQQ72_000834"
     CDS             16578..17393
                     /gene="fepC"
                     /locus_tag="OQQ72_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS2010652.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIKHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="OQQ72_000835"
     CDS             complement(17390..18523)
                     /gene="fepE"
                     /locus_tag="OQQ72_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HCS2010653.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(18738..22619)
                     /gene="entF"
                     /locus_tag="OQQ72_000836"
     CDS             complement(18738..22619)
                     /gene="entF"
                     /locus_tag="OQQ72_000836"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HCS2010654.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
     gene            complement(22616..22834)
                     /gene="ybdZ"
                     /locus_tag="OQQ72_000837"
     CDS             complement(22616..22834)
                     /gene="ybdZ"
                     /locus_tag="OQQ72_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis protein YbdZ"
                     /protein_id="HCS2010655.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            complement(22837..24039)
                     /gene="fes"
                     /locus_tag="OQQ72_000838"
     CDS             complement(22837..24039)
                     /gene="fes"
                     /locus_tag="OQQ72_000838"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HCS2010656.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            24282..26522
                     /gene="fepA"
                     /locus_tag="OQQ72_000839"
     CDS             24282..26522
                     /gene="fepA"
                     /locus_tag="OQQ72_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HCS2010657.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATRDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            26697..27317
                     /gene="entD"
                     /locus_tag="OQQ72_000840"
     CDS             26697..27317
                     /gene="entD"
                     /locus_tag="OQQ72_000840"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HCS2010658.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD"
     gene            complement(27439..27591)
                     /gene="hokE"
                     /locus_tag="OQQ72_000841"
     CDS             complement(27439..27591)
                     /gene="hokE"
                     /locus_tag="OQQ72_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokE"
                     /protein_id="HCS2010659.1"
                     /translation="MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL
                     AYEPKK"
     gene            28044..29162
                     /locus_tag="OQQ72_000842"
     CDS             28044..29162
                     /locus_tag="OQQ72_000842"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS2010660.1"
                     /translation="MPLPDFHVSEPFTLGIELEMLVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQVTVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL
                     HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD"
     gene            29228..29476
                     /locus_tag="OQQ72_000843"
     CDS             29228..29476
                     /locus_tag="OQQ72_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HCS2010661.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            29541..29909
                     /locus_tag="OQQ72_000844"
     CDS             29541..29909
                     /locus_tag="OQQ72_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS2010662.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRPG"
     gene            30003..30656
                     /gene="nfsB"
                     /locus_tag="OQQ72_000845"
     CDS             30003..30656
                     /gene="nfsB"
                     /locus_tag="OQQ72_000845"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HCS2010663.1"
                     /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYVFNERKILDASHVVVFCAKTAMDDAWLKLVVDQE
                     DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD
                     AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV"
     gene            30764..32011
                     /gene="ybdG"
                     /locus_tag="OQQ72_000846"
     CDS             30764..32011
                     /gene="ybdG"
                     /locus_tag="OQQ72_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel YbdG"
                     /protein_id="HCS2010664.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGT
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(32079..33455)
                     /gene="pheP"
                     /locus_tag="OQQ72_000847"
     CDS             complement(32079..33455)
                     /gene="pheP"
                     /locus_tag="OQQ72_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HCS2010665.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(33557..36701)
                     /gene="cusA"
                     /locus_tag="OQQ72_000848"
                     /pseudo
     CDS             complement(33557..36701)
                     /gene="cusA"
                     /locus_tag="OQQ72_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
     gene            complement(36713..>37820)
                     /gene="cusB"
                     /locus_tag="OQQ72_000849"
     CDS             complement(36713..>37820)
                     /gene="cusB"
                     /locus_tag="OQQ72_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HCS2010666.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         9071 a        10550 c         9637 g         8562 t
ORIGIN      
        1 atttgtagta ataagcatcc gcgaattact gacaatagca cttatgaaca aattatggca
       61 gaagagttca cccaattaat atccaaatca gcaggagttg atgatattca aatggaaata
      121 gacgagaagt ttatgaatcg caaaatttca tttcgtggtt cctctttgct gacaataatt
      181 aatagcattg cagttacaga tttactggga atagtcccct atgaacttta taactcccac
      241 cgtgactttc ttaatttaaa agagataaaa ctagaacatc cgttaccttc aataaagctt
      301 tacatttcct ataataaatc ttctttaaat aatttggtgt tctcccgatt tattgaccgt
      361 ctaaatgaga gtttttgata tataactaca gacagctact ataactttca tctatttatt
      421 cacagcgcga atgaaaaata aaacactctg ctttacagtg tttactttat aattaacagt
      481 cttatctcac tgttcaccct gtaacgttca gagagcgtct tcagatgtct atttataaaa
      541 ttcctcttcc gctcaatatt ctggaagctg cacgagagcg tattacctgg acactcaaca
      601 ccctaccccg cgtttgtgtc tcattttctg gcggcaaaga ctctggttta atgctgcatc
      661 tgacagccga acttgcccga caaatgggca aaaaaatctg cgttttgttt atcgactggg
      721 aggcgcaatt ctcttgcact attaactatg ttcagtccct gcgcgagttg tacaccgatg
      781 tcatcgaaga gttttactgg gttgcgctcc cgcttacgac gcaaaattcc ctttcacaat
      841 accaacccga atggcagtgc tgggaacctg atgtcgaatg ggtgcgtcag cccccgcaag
      901 atgcgataac cgatcctgac tttttctgct tttaccagcc aggcatgacc ttcgaacaat
      961 ttgtacgtga gtttgccgaa tggttttcac aaaaacgtcc ggcggcgatg atgatcggca
     1021 tccgtgcgga tgagtcctac aaccgttttg tcgccatcgc cagtttaaat aaacaacgtt
     1081 ttgccgacga taaaccatgg actacggccg caccaggcgg tcatagctgg tacatttacc
     1141 ccatttacga ctggaaagtg gctgatatct ggacctggta tgcaaatcat caaagtctct
     1201 gcaacccact gtataaccta atgtatcagg caggcgttcc tctgcgtcat atgcgaattt
     1261 gcgaaccttt tggcccggag caacgacaag gattatggct ctatcacgtt atcgaaccgg
     1321 atcgctgggc tgctatgtgc gcacgagtca gcggggtaaa aagtggcggc atttacgccg
     1381 gacatgacaa tcatttctat gggcatcgga aaatcctcaa gccagaacat ttagactggc
     1441 aagaatatgc attattgctg ctcaatagca tgccggaaga tgatcgcatc aaagcgatta
     1501 atgaaatccg catggcgatc catcaggtta gcccctttcg tgaagagcca gtggattgcg
     1561 ttctgtgggt taaaaacagc caacttatgc ctaatgatta caacccaaac aacgtggcac
     1621 cacccgaaaa aaaactgctg caaaaatcca ttgaaataga tggttttacc caacccattg
     1681 tggtcacaca tacggataaa aatgccatgg aaatcgtgga tggttttcac cgccatgaaa
     1741 ttggtaaagg ctcatcatca ttaaaattac gcttaaaagg ttatttgccg gtgacctgtc
     1801 tggaaggtac gcgtaatcaa cgcatcgccg cgactattcg tcataatcgc gctcgtggac
     1861 gccatcaaat caccgccatg tcggaaatcg tccgtgaact tagccagttg ggatgggacg
     1921 ataataaaat tggcaaagag ctgggaatgg acagcgacga agtgctgcgc ctgaagcaaa
     1981 ttaacggcct gcaagagttg tttgccgacc gtcaatattc ccgcgcctgg acggttaaat
     2041 agctaaagct ggcgcaggcg ttcagctgct gccagcaacg tcgattcctt cttggcaaaa
     2101 cagagacgaa tcagtttatg tgggaaggga tcggcgcaaa acaccgacag cggaatcgcc
     2161 gccacgccgt gctcccgcgt cagccactgg caaaactcaa catcatccag ggtagaaacc
     2221 tcgctgtaat ccaccagcaa aaagtatgta ccttcacacg gtaaaatctc cagccggctt
     2281 tcatttaaag cattcaccag aatatcgcgc ttctggcgat aaaagtccgg taacgcaaga
     2341 taatgctcag gttctgcacg tagcatatca gcaagcgcca gctgtgccgg ggtattcacc
     2401 gaaaaggtca gatactgatg taccttgcga atttcggcgc tgatgggcgc tggcgcaaca
     2461 caataaccca ctttccagcc ggtcatatga tagatcttgc caaatgaaga aaccgccact
     2521 gcccgctcac gcagctgcgg atgcgccagc acactggcat ggccctgttg tgaaaagttg
     2581 atgtgctcgt agacttcatc gctaatgaca aaaatctcgt gcccggcgat cgcctgccac
     2641 aaagcggcga aatcagcctg ctgccagaca gttgcactgg ggttatgcgg agtgttgagg
     2701 atcaccagtc tggtgcgctc gcttaataat gcggcaaatt cctgccagtc aaggtggttg
     2761 cagtgccata cgcttcacta ttcccccaga aagcgcgatg gcgggggcgt aactgtcata
     2821 gctgggatca aaacaaatca cttcatcgcc attgcgcacc agtgcggtaa tcgccgcgta
     2881 taacgcttcc gtcgcccctg ccgttacggt gatatcgcta tcggcatctg gttgatagcc
     2941 atacaaacgt tccgttttct gagcaatcgc ctcgcgcaag gcctgcacgc cggtcatggg
     3001 cgcgtattgg tttgccccct gggcaacgtg gtacgccagc cgctcctgta aatagcgcgg
     3061 accatcaaaa tcaggaaagc cttgcgacag gttaatcgcc tggtgttgct gcgccagcgc
     3121 gctcatctgg gtgaaaatag tggtgccaag ttgtggaagt ttgctttgtg gaatcagagg
     3181 gttatttgtc atttttattg tacctgacga agttgcgtgt tgaaggcact ataacacgat
     3241 gctagtattt ggcaatcaag acgtttagat gtctaaataa aacaataagg acaacacaac
     3301 atgcctcaca atcctatccg cgtggtcgtc ggcccggcta actacttttc acatccaaga
     3361 agtttcaatc acctgaacga ttttttcact gatgaacaac tttctcgcgc ggtgtggatc
     3421 tacggcaaac gcgccattgc tgcggcgcaa accaaacttc cgccagcgtt tggacttcca
     3481 ggggcaaagc atattttgtt tcgtggtcat tgcagcgaaa gcgatgtaca gcaactggcg
     3541 gctgagtccg gtgacgatcg cagcgtggtg attggcgtcg gcggcggcgc actgctcgac
     3601 accgcgaaag ccctcgcccg ccgtctcggt ctgccatttg ttgccgttcc gacgatcgcc
     3661 gctacctgcg ccgcctggac accgctctcc gtctggtata acgatgccgg acaggcgctg
     3721 cattatgaga ttttcgacga cgccaatttt atggtgctgg tggaaccgga gattatcctc
     3781 aatgcaccgc aacaatatct gctggcgggg atcggtgaca cgctggcgaa atggtatgaa
     3841 gcggtggtgc tggctccgca accagaaacg ttgccgctaa ccgtgcggct ggggatcaat
     3901 aatgcgcagg ccattcgcga cgtcttgtta aacagtagcg aacaggcact tgccgatcag
     3961 caaaatcagc agttaacgca atcattttgc gatgtggtgg atgctattat tgctggtggt
     4021 gggatggtcg gtggtctggg cgatcgtttt acgcgtgtgg cggcggctca tgccgtgcat
     4081 aacggtctga ctgtcctgcc gcaaaccgag aagtttcttc acggcaccaa agtcgcttac
     4141 ggaattctgg tgcaaagcgc cttgctgggt caggatgatg tgctggcgca attaaccggg
     4201 gcgtatcagc gttttcatct gccgactacg ctggcggagc tggaagtgga tatcaataat
     4261 caggcggaga tcgacaaagt gattgcccac accttgcgcc cggtggagtc cattcattac
     4321 ctgccagtca cgctgacacc agatacgttg cgtgcagcgt tcgaaaaagt ggaatcgttt
     4381 aaagcctgac gtgcaaattt agcagcagcg cgcgccgcct tttccaccgt agcgcgcgtc
     4441 ctgccgctca cggaaaaact cctcgtaggt catcggcgtt tgatcgggat ggttaacccg
     4501 catatgttcg acatagttgt cgtaatcagg cataccaatc atcagcttcg ccgcctgacc
     4561 taaatatttt ccggcttttg ccagtgaatc aaacatcttg gcctccgcta accatgttgc
     4621 tgaaagagtg ccggatgcgg cgtgaacgct ttatccggcc tacaaatgct atcaacgcac
     4681 tcggtcagtc ccctcgcccc atcggggaga gggttagggt gagggggaac cctcggcact
     4741 atgccaacat tcgccaacat cccccctcac tctgacttta gtgcgcgcct ttcgcctgcg
     4801 ctacgatctc ctcgacattt tccggcatcg gctcatacgg cgtttctttc gccgttggct
     4861 tcggatcttt caatgccgca agtgccgtct taatcgagaa cagtgccaga accaccacga
     4921 ccaccataaa gaagatggtt aacccggcat ccagacggtt gttgaacacc agttgcgcca
     4981 gctgtgactc agtatactgc gacggaatat tgccgctgtc gatcattgcc tggaacttgt
     5041 tagcaatggc caggaagccg actttcgcat ccgggctaaa cgctttctgc cagccagcgg
     5101 tcagggtaca aatcagcagc caggccgttg gtaccagcgc cacccaggcg taacgttgac
     5161 gtttcatctt gaacaacacc acggcacaga gcatcagcgc catccctgcc agcatctggt
     5221 tggcaatacc aaacagcggc cacagagtgt taataccgcc cagcggatcg accacgccct
     5281 gatggaggaa gtagccccac gccagtacgc acagcgccgt tgccagcagg ttagcaggca
     5341 gtgaatcggt ccgcttcagg ccaggagaca ccacgcccag cagatcctgc aacataaagc
     5401 gcgcagcacg cgtacccgca tctaccgccg tcagaataaa cagagcttca aacagaatgg
     5461 cgaagtgata ccagaacgcc acatccatca taccacccag cgcaccgtgc aggatgtaag
     5521 ccatccccac cgccaacgtc ggcgcaccgc ccgcacggga aatgatcgac tgttcaccca
     5581 cttcgctggc aatctggttg agcgtatctg gtgtaatgct aaagccccag ctactcacca
     5641 cctgcgcggc agaagcgacc acatccgccg tccctgctgg agccagcacc gccattgggc
     5701 tgttcatggc aaagtaaacg cccggatcga tgatacaggc ggaaaccagc gccataatcg
     5761 ccacgaagga ttccattaac attccaccgt agccgataaa acaagcctgc ccttcgttcg
     5821 ccagcatctt cggcgtggtg ccggaagaga tcagcgcatg gaagccagac accgcgccac
     5881 aggcgatggt gataaacagg aacgggaaca ggttaccggt ccataccggg ccagtgccat
     5941 cgacaaattt ggtcagcgca ggcatggtca gcgtcgggcg cataatcaaa atgcctaccg
     6001 ccagaccgac gatcgtcccg attttcagga aggtagagag gtagtcacgc ggggccagca
     6061 gcaaccacac cggcagcacc gccgccacaa aaccgtaacc caccagcatc caggtcagct
     6121 gcacgccggt aaagtcaaag tacggtgccc aggtcggact ttctgccacc cagccgccag
     6181 agataatggc gaaaatcagg aataccagac cgatgaccga cacttcacca atacgccccg
     6241 gacgcagata gcgcaggtag atccccataa acagcgccag cggaatggtg aacgcaacgg
     6301 tatacgttcc ccacgggcta tgagtcaggg ctttcaccac gatcatcgcc agtactgcaa
     6361 ggataatgac catgatcata aagcaggcca ccagcgctat caccccggcg gttggcccca
     6421 tctcttcttt gaccagctca cccagcgatc gaccgtcacg gcgcgtagaa acaaacagca
     6481 ccatgaaatc ctgcaccgca ccggcgagaa ccaccccggc gagtagccag atcatccccg
     6541 gcaggtagcc catttgcgct gccagcaccg gcccaaccaa cggacctgct ccggcgatgg
     6601 ccgcaaaatg gtgaccgaac agcactttct tgtccgtcgg cacatagtcc agcccgtcgt
     6661 tatggcgcac cgctggcgtc atacgcttcg ggtcaaccgc cagcacattt ttggcgatat
     6721 acaacccata aaaacggtaa gcgatcagat agatacagac cgacgccacc acaatccaca
     6781 gcgcgttgat ctgttcccca cgatttaaag caatgtatcc cagagcaaat gctcccatta
     6841 cagagagcac tgtccagacg aggtatttcc ctgatttgtt catagttgtt atccgtgtgc
     6901 gtgtccatag agatgttaca ttttgtttct ataacatctt tgtacgattt aacaacacgg
     6961 taactatgta aatcggagtt gaaaccaata tttaacttaa caatgttaac tcgatcactc
     7021 cgttaaccga gttttcctgc aatctcattt aattctgtcg ggctcatccc aaaactgccg
     7081 tacccagccg acaagtgcag caacgccgcc cctgttcatc gaaaacgacg atttcccagc
     7141 tctgattttg ccgcccaaga tgcagcggct ggcagacgcc gcgtaccttg ccttcagaca
     7201 ccgggcgatg atgggtggcg ttaagttccg tgcccaccac acactgcccg tcacgggtca
     7261 tcataaatcc ggccatcgat cccagcgttt cagccagcgc cgccgacgcg ccgccatgca
     7321 gcaggccaaa cggctgatga gtacgggtat caaccggcat ttcggcttcc agcacatcat
     7381 ctcccagacg ggtatacaca attcccagat gcgccaccat tgtgttatcg ctggtggcgt
     7441 tcagttcgtc gagcgttaaa tggcgtttcc agatcatgct tatgccccca gcgttgagcc
     7501 gccatcgacc acaatatcct gtagggtgat atggctggcg aggtcagagg cgaggaacaa
     7561 aatcgtgttg gcgatctctt gtggacgggc gattttcccc agcggaatgc cgagtttaaa
     7621 ctgctcgcca aagccgcgaa tacgctgttc ttcggcgtca tcgctcaccc acagcgtgcg
     7681 ttgcatatcg gtgtcggtgg agccaggcga aaccacatta cagcgcacgc cgctacccgc
     7741 cagttccagc ccgacgctca acgccaggct tttcagcgcc gctttcgatg cgccataagc
     7801 actcatacca atacgcggcg tgtgtgcggc gtcggacgcc acagtgacaa tcgccccgcc
     7861 ccgctgacgg cgaaactggt tcatggtttg ctggaacagg ttaaacgcac cgccgacgtt
     7921 aaccgcaaaa gtctgctgcc agtcctcttt actgagctga tcggtcgcgc ccatgcgcaa
     7981 aattcccgcc gcattgatca gcacgtccag tcgctccgtt tcagctaaca gtcgctgaca
     8041 tacctgcgcc acctgcccgg cgtcggcaac atccattact tcggtcgcaa agggatattg
     8101 ctcctgagtg aacgcttgat caaaacctgt aactttcgct cccgcctcaa caaacgccag
     8161 cgccgtggcg tagccgatac ctttacctgc gccggttacc cagacatttt taccgctgaa
     8221 atccattatt taacctcgcg ggagagtagc ttccaccagg cgtcgatggt cgggtttttc
     8281 gccagcatga caaagtcgat atcaccatgc actttgcgcc agcgcgccgc cagcgccatc
     8341 atgcgcaccg aatccagacc gtagtcgatc aggttgtcgt catcgaacgg ttcatcggac
     8401 tcgtccagca acggcaggat aacctcacgc agcgccgctt tgctggcggg gacaggtgct
     8461 ggcagtaatt cttcagtcat caccacccgg ccagaccgcc cggccacata tttcagcgac
     8521 atcaaatgct cgtcacggct gaaatcggcc agcgcatccg ccaccataaa cggtttaata
     8581 tcgcgcataa atgcgtcggt tgcggtggtc atacagccaa tgtgggcata taccccggta
     8641 ataatcagct ggttacgtcc actctctttg agcatttgct ccagcggaga acgatgaaac
     8701 gcgctgtagc gccacttcac cagcaccgtg tcgtcggcat ctggcgtcag gcgatccacc
     8761 accttttgct gttccggcga acgggtcagg cccggccccc acatatcatt caacagcgcc
     8821 cgatcttcat cgctctgctc tttcggctgg gcggtgtaat aaactgggat attgtgctgt
     8881 ttgcagtagt cgcgcagcgc agcaatattc gcgatcacct gctccatcat cgggcagttc
     8941 tcgccccaga agctgacaaa atagtcctgc atatcatgga ttaacaacgc ggcacgttgc
     9001 agttcaaagg cccagtcaac tttattctgc ggaatatcgt gagactccgg cagtgcgtaa
     9061 gcctgtaatt ttggaatagc catcgtgttc tctccttcag gctgatgcgc gtgacgccag
     9121 ccactgactt aattgttttt tatcgacttt cccgaccgcc gtcagcggaa gtgaatctac
     9181 acactccacg cgatccggta atttaaattc ggcaataccc tgttcacgca ggaaacgacg
     9241 cacctgcacc gcgcgcagcg gctcttttac caccagataa gcacagcttt tttcgcccat
     9301 cagctcatct tccatgctca ccagtgcggc atagatcacc gccggatggc gcagcagcag
     9361 gttttcgatc tcttcggcag cgatcttctc gccgccacgg ttgatctgat ctttctcgcg
     9421 cccctgcacg gtgatgtaac cctctggatc aatagagatc agatcgccgg aacagtaaaa
     9481 accgttggca tcaaaggcgc tggcattgtg ctgcggactt ttgtaataac cgcggaaggt
     9541 gtacggcccg cgcgtcatca ggcgtccgac ttccccttgc ggcagtggat ttccttcggc
     9601 atcggcaacc cacacttcat cgtccggaca cattgggtaa ccctgggtat ggataatttt
     9661 ctccgcgcta tcatcaagac gggtgtagtt caccagccct tccgccatgc caaacacctg
     9721 ctgcaactgg cagccaatct cagcgggaat acgcgccgca agggtggcag aaagacgtgc
     9781 gccgccgacc tgtaacagtt tcagcgaggc aagctgcgcc cggctttcgc cttcagccag
     9841 cgcctgcaac cacaggctga ctgccggcgg caccagcgcg gtgacgttca cctgatgttt
     9901 ttcaatcaat gggaagcaaa gcgtagcgct gggatcggcc gccagaacaa ccgttcctcc
     9961 ggcaagaaag acgcccagcg atcctggcga actcatggcg tagttatgag ccgccgggat
    10021 cgcgcacagg tagcgcgtct gttgtgtgaa ctgacaaatc tcgacgctac gacgcacgct
    10081 gtagtagtag tcgttatgag tgcgcgggat cagcttcggt gtaccggtgg tgccgccgga
    10141 aagctggaaa taggccactt catcagcagg tgatggcgtg gcagtaaaac cgtctgccgg
    10201 atggttaatc gcatcctgca agttatgctc accgctgtcg ttgtgcagtt gcaccacgcg
    10261 aatggaggaa tgttctgtga cgaaagtatt gaggaaatca tccccgctaa acagcgcatg
    10321 ttggcgatcg gcaatcagca atgcgggttc aatctggctg gcataggcgt tcagttcact
    10381 acgctgatgg ctgaacaacg ccagcaccgg cgcaacgccc agtttcagca gcgcgaaaaa
    10441 ggtaatatac aattcagcga cgttacccag ttgtaccagc gcggtttcac caggtttaat
    10501 gccctgacgg cgtaaagtac acgcgaggtt atccgccgcc tgattcagct cccggtaact
    10561 caactgtagc tcgccgtcga taaccgcgat gctgtcactc gcagcgtggc gagtcagaat
    10621 gtcggtcagc ggcaaatcct gccagtagcc tttttcccga tagcgacggg caaactcttc
    10681 cggccagcgg gtgaatggaa tgctcatcct cgctccttaa tgcaatccaa aaacattcaa
    10741 catggtagaa agtttgacgc ctgtttcgcg ccactcaccc aacggtgacg acgcaagcac
    10801 aatccccgct ccggcaaaca gacgcacctg attttcccgc agcttcgcgc agcggatggt
    10861 caccacccat tcgccgttac cttcgctgtc acaccaaccc acaatgccgc caaacagttc
    10921 gcggtcgaac ggctccagtt cagcaataac ctgagtcgcg gcctgatgcg ggaaaccgct
    10981 cagcgcgggg gtcggatgca gcagacaggc cagagtcagt gcgttttctt gcgaattcgc
    11041 tttaccttca aagggagttg cgagatgcca cagcgtcggc gtggtaatca attgtggaga
    11101 ggagggaacg tgtaactcac tactgcgttc gcgcagtacc tctttcatcg cctgagtcac
    11161 cagttcatgt tcatggcgat ctttttctga cgccagcaga cgattacccg cttcgcgatc
    11221 gagcacttca tccggctgac gacgcgcgga accggctaac ggaatggagc taaaacgctc
    11281 gccgtcttta cgtagcagca gttccgggct ggcccccagc aggacgccac catcagccag
    11341 cgggacatgg aagttgtaac taaccgggtt ttgcgcaatc aaccgttcca gcaatacgcc
    11401 actatcaatg gcggcgtcag tggtgatatc aatcaaccgt gacaacacca ctttgtcaac
    11461 ctgcggcgtg gcggtaagtg cggcagcgcg ggcaaccatc tgttcaaacg tggtttgttc
    11521 cggaattgcc tggcgttcca ccacattcag cgactggctg cgggtgaaac ggcgggcgga
    11581 agcttgtttt tcctgacggg agaacgactg ccaggattca ggaatataca gcgacgaagg
    11641 ctgacgtgga tcgaagggaa tcgccccgac catcaccgga tttttgatgc cctgcacttt
    11701 ggcatcggca aacagcgcgg cgagtttttg ctggaaggga ctgtcgggcg aatccccgtt
    11761 cacagccggt tcatcgaagc gggcgaaaca tcctgacgtc gtaaaactgc ggtacggcga
    11821 cataaagaaa aagcgattgg gcgcaagtgt tgccatggtc tgctgtactt cctcagccag
    11881 tgacgtatcc atatcatcct ccacaaaatg ataaaggctt taataatgat tatcatttat
    11941 attttcggtc gctaacctaa aagcaaacgc gcactatgtc aactcttgag gtaacgcaat
    12001 ctgcaactcg gggttgcatc tggttgtggt tacaatgaaa atgagaagca ttattgatgg
    12061 attcgcataa gcgcaatgtg atgtcctgcg ccgttcttcc ccctctccct tccagggaga
    12121 gggctggggt gagggtcaat attcgcacca gtgctggctg ctcccatcac cctaaccctc
    12181 tccccaaagg ggcgagggta cggatagtgc gctttgtcga atttgtcatt acgcccttaa
    12241 ccttattaat aacaggaagc tgatttgtga gactcgcccc gctctaccgc aacgcccttc
    12301 tattaacagg acttttgctt tccggaatag ccgcagttca ggccgccgac tggccgcgtc
    12361 agattactga cagccggggc actcataccc tggaaagcca gccgcagcgt attgtttcca
    12421 ccagcgtcac cctgaccggc tcactgctgg cgattgatgc tccggtgatt gccagcggcg
    12481 cgaccacgcc aaataaccgc gtcgcggatg accagggctt tttacgccag tggagcaagg
    12541 tggcgaaaga acgcaaacta caacggctct atatcggcga accgagcgcc gaagccgttg
    12601 ccgcgcaaat gccggatctg attttaatta gcgcaaccgg cggggattcg gcgctggcgc
    12661 tgtatgatca gctttccacc atcgccccga cattaatcat caattacgac gacaaaagct
    12721 ggcagtcgct gttaacgcag cttggcgaaa ttaccgggca tgagaaacaa gcggcagagc
    12781 ggattgcaca gtttgataag caactggcag cggcgaaaga gcaaatcaaa ttaccgccgc
    12841 agccggtcac tgctattgtc tataccgccg ctgcacacag tgccaatctc tggacgccgg
    12901 aatcagcaca agggcagatg ctggaacaac tcggctttac gctggcgaaa ttgcccacag
    12961 ggttaaacgc cagccaaagc cagggcaaac gccatgacat cattcagctt agtggagaaa
    13021 atctggctgc agggttaaat ggcgagtcac tattcctgtt cgccggtgat cagaaagacg
    13081 ccgatgcgat ttatgccaat ccactgctcg cgcacctgcc cgcagtacaa aacaagcagg
    13141 tttatgcgct gggaaccgag acgttccgcc tggattacta cagcgccatg caagtgctgg
    13201 aacgacttaa ggcgctgttt taagcattaa ctgtcggacg ctgtcacctg cggcggcgtc
    13261 tggcgaaaac gtcgcaactc caccagcacc agcaataaca acacgccgat aatcaacaaa
    13321 ccaaaaccgc tcgcgcttgc ggaagcaacc ggtgtcatca tcgctcccag accgcctaac
    13381 agcgccgcgc ctatggcatc gcccgtcacg ttttgtgccg tccacaaacc gttgattcgc
    13441 cctaacattg cttccggcgt ttgcgtttgc agcattgtat attgcagcaa cgaactgacc
    13501 gcactcagcc agccgaacag cgccagacaa accacgccta aaatccacat cggcatcagg
    13561 ccaaataaac caatggcgag gaacgatccc aacgtggaga gcaacatcaa caatcctggt
    13621 cgcgcgctat gcgccagttt cccactggtt aatgcgccaa tagccgcacc gagcgggatc
    13681 gccgcataga gaaaaccaat ctctgccgcc gacatctgcc agttgtcagc cagcgccgga
    13741 tacagtaccc gcaccgcgct cgccatcgtc aataaaccac ccagcaacgc aatcccgccc
    13801 accagcgggc tggcgagcag aaaacgaaat cctgccagta atgatttcaa cggatgctcg
    13861 cgcggctgcg gtggcggtgg caacgccgga aggcttaaca acggtagcaa ggtaataaac
    13921 gtgcccgccg ccgccagccc gtagttccag gctacgccac cggtcgccag caataaaccg
    13981 ccaatcatgg gcgaaatcac cgaccccaga cgcacggtca acatggtgat cgccccggcc
    14041 tgcattaagt tttcacgccc taccagtgct ggtgtcgccg ccaatagcgc cgtaacgcca
    14101 agcgatgcga aaaaaccatc ccataaacca agtaaataga ttgccagcaa tgacggctcc
    14161 ggcagcagtg cattaaggca cagtccaatg aagccaatgc cacaggtgcc gcgcgccagc
    14221 aaaatcactt ttttgcgctc atagcgatcc gccagcacac cgccaaccat caggccaaca
    14281 aacatcgcgc cgccggtcag cgtcaccgaa agccccacca gccaggtaga atgcgtcatc
    14341 atctggatct gcaccggcac cgcgacgccg agcaaaccca gagacacaat tgagataaaa
    14401 cgagcgagga atactgcgcg aaacgccggg tgcgttttca acaggctgag gttaagcagc
    14461 caggattgtt tattcattac aatgccttgc catcaaatat tttaaatacc tattcttagg
    14521 ctgcacatgc taacatatcc aaataagatc gataacgata attaatttca ttatcatgga
    14581 agttcgtatg tctggttctg ttgccgtgac acgcgccatt gccgtgcccg gattgctgtt
    14641 attactgatt atcgcgacgg cattaagcct gctcattggg gcaaaatcac tccccgcttc
    14701 cgtagtgctg gaggccttct ccggcacctg ccagagcgcc gactgcacca tcgtgctcga
    14761 cgcgcgactg ccgcgcaccc ttgccggttt actggcaggc ggcgcgcttg gccttgccgg
    14821 ggcgttgatg caaaccctca cccgaaatcc acttgccgac cccggcttgc ttggcgtgaa
    14881 cgccggagcc agctttgcca ttgtgctggg tgcggcgctg tttggttact catccgcgca
    14941 ggaacaactg gcgatggcct tcgccggggc gctggtggcc tcattgattg ttgcctttac
    15001 cggcagtcag ggcggcgggc agttaagtcc ggtgcgttta accctggcgg gcgtggcgct
    15061 ggcggcagtg ctggaagggc tgaccagcgg catcgccctg cttaatcctg acgtctacga
    15121 tcaactgcgt ttctggcaag ccggttcgct ggatattcgc aatctacata ccttaaaagt
    15181 ggtgctgatc ccggtgctga tcgccggagc aaccgcgcta ttactgagcc gcgcgctgaa
    15241 cagtttaagc ctcggcagcg acaccgcgac ggcgctgggc agtcgcgtgg cgcgcacaca
    15301 gttaattggt ctgctggcga ttaccgtgct ttgtggtagt gcgacagcgg tagttggccc
    15361 gattgccttt attggcctga tgatgccgca tatggcgcgt tggctggtgg gtgccgatca
    15421 tcgctggtcg ctgcccgtaa cgctgcttgc tacccctgcc ctgctgctgt ttgccgatat
    15481 catcgggcgg gtgattgtgc ccggtgaact gcgcgtttct gtggtcagtg cctttattgg
    15541 tgcaccggtg ctgatcttcc tcgtgcgacg taaaacgcga ggtggtgcat gatttacgtc
    15601 tctcgccgat tactcatcac ctgtttgctg cttatttccg cctgtgtggt tgcaggtatc
    15661 tggggattac gcagcggtgc cgtcacgctg gaaacctcgc aggtattcgc cgcgctgatg
    15721 ggcgatgcgc cgcgcagtat gacgatggtg gtcaccgaat ggcgtttacc acgcgtgctg
    15781 atggcgctgt tgattggcgc ggcactgggc gtcagcggtg cgatttttca gtcgctgatg
    15841 cgtaacccgc tcggcagccc tgacgtaatg ggctttaaca ccggggcgtg gagcggcgtg
    15901 ctggtggcga tggtgctgtt tggtcaggac ctgacggcta tcgcgctggc agcaatggtg
    15961 ggcggcattg tcacttctct gttggtctgg ctgctcgcct ggcgtaacgg tatcgacacc
    16021 tttcggttga ttattatcgg catcggcgtt cgcgccatgc tggtggcctt taatacttgg
    16081 ctgttgctga aagcgtcttt agaaacggcg ctaacagcgg gtttgtggaa tgccggatcg
    16141 ctcaatggcc tgacgtgggc aaaaacttcg ccttccgcac ccatcattat attgatgctc
    16201 attgccgccg ccttgctggt gcggcgaatg cgcttgctgg agatgggcga tgataccgcc
    16261 tgcgcgctgg gcgtcagcgt cgagcgttcg cgtctgttaa tgatgctggt tgcagtggtg
    16321 cttaccgctg cggcaacggc gcttgccggg ccgatttcct ttattgcttt agtcgcgccg
    16381 cacattgccc gacgcattag cggcaccgct cgctgggggc tgacccaggc ggcgctgtgc
    16441 ggagcgctgt tactgctggc ggccgatctc tgcgcccaac aactgtttat gccgtatcaa
    16501 cttccggttg gcgtcgttac cgtcagcctc ggcggtattt accttatcgt cttgttaatt
    16561 caggagtctc gcaaaaaatg accgaatcag tagcccgttt gcgcggcgaa cagttaaccc
    16621 tgggatatgg caaatatacc gttgcggaaa atctgactgt agaaattcct gatggtcact
    16681 tcacggcaat tatcggacca aatggctgtg gtaaatccac gttactgcgt accttaagcc
    16741 gcctgatgac gcctgctcac gggcatgtct ggctggatgg cgagcacatt aaacattacg
    16801 ccagtaaaga agttgcacgc cggattggtc tgttggcgca aaatgctacc acgccgggcg
    16861 atatcaccgt gcaggagctg gtggcgcgtg gacgttatcc gcatcaaccg ctgtttaccc
    16921 actggcgcaa agaggatgaa gaagcggtaa cgaaagcgat gcaggccacg ggaataactc
    16981 atctggcaga tcaaagcgtg gatacccttt ctggcggaca acgccagcga gcgtggatcg
    17041 cgatggtgct ggcccaggaa acggcaatta tgctgctcga cgaacccacg acctggctgg
    17101 atatcagtca tcagattgat ctactggaac tgttaagcga actgaaccgc gagaaaggct
    17161 ataccctggc ggcggtgctg cacgatctta atcaggcctg tcgttacgcc agccatttga
    17221 ttgcattgcg ggaagggaaa attgttgctc agggagcgcc gaaggagatt gtcactgctg
    17281 aactgattga gcgcatttat ggtctgcgat gcatgatcat tgacgatccg gtagccggaa
    17341 cgccgcttgt ggtgccgctc gaacgaacgg caccttcaac cgcaaatagt taaactaagt
    17401 ggtctgccat catggcatcc tgttttctgg atgccatcgc atagcgcaat aacacgctac
    17461 cacaagccac catcccgccg atcagcgcgg aaaggatcac aataatcgcc ttacccggac
    17521 cgtctttttt cactggcaat gacgggctta actgatattt aaacggcgta aaattcacat
    17581 cgttgacatt tgcttttgtt aattgctcga caagatactg ccgattacgt aattcaccgt
    17641 tcagttccgc aacgtcagta accgcttttt caatttccag tttgcgttca ataccgtctg
    17701 cgccgagaga aatagagaaa tcggggtcat ctttaacggc ctgaccatta ctgtatacgg
    17761 gctttttaat tcctgccgcg ttggcaatgt cgagtgaata attgaggcgc tgaatgtttg
    17821 catcaagttg atttttcgtt ttaatgcgat cctgagccag tttttctttt tcaaactggg
    17881 ttttgatctc cagtttatta cggacgtttt ctatcgactc tttcaccacc aacgcagaga
    17941 tataatcgat atacccgctc aaaacggtct gcgcctcttt actggttggc gcggtaaaac
    18001 ttagcgtcca ggaggtatac agtgacggtt catctttttt cttactggca ttgtcatcaa
    18061 ccgctttcat tttttcgctc aatgcaacaa tagcgcgatg caaatccagt tcatcgattt
    18121 tcgcctcttt taattggtcc atcacataag gtgatgaacg caggtactct tccagcaagc
    18181 taacagactg aaacttcttg ataaacaggt taaatgcacc gccacggtcg atattaacat
    18241 cgagatcaag aacgcggagt ttggtaaagg ttttctccag gtcctgccac tgaatggctt
    18301 cggcgggagt aataacggct gagctggtcc atttttgcgg caggatgaaa gagatcagta
    18361 aacctgcgca ggcaaatgca aaaacgaccg ccatgaccgt ttttttggcc cgccataaaa
    18421 cttcgattag attaagtaaa tcaatttcat tactactggg cgacgccaga ggatactcgg
    18481 aaaaatgagc gtcacttccc tgtttaatat tcagtgatga catgggtata acctgaaaat
    18541 gagtccaata gggggaaatc tccacggcgc tcactttacc agttggtgag aattatccga
    18601 agctgaagtt tgtaaattcc ttccactgaa tgcaacattc actctattta agagaaatat
    18661 tcatcaaacc tataaatcaa acaaataaaa aacccataat tattttctgt aattatgggt
    18721 ttatagataa tattaattta cctgtttagc gttgcgcgaa taatcggccc aatttttaca
    18781 aacgcccctg gagagataat atccacatgc gcacaatcct gacgatagat atccagctcg
    18841 gcaatccagg gcgaccaagc gcgttcgggg ctcatacctt cctgaagcgt gcgttcagca
    18901 acaaacagcg tcgctttacc atcaaacggt acgctatgag cagtcgtcag cagacgcaca
    18961 gcatcagcgt agttgccttc aatggtggta aacaactccg ttgaagtact tccctgctgt
    19021 gccgccagga aggcctcgcg ttcgcggtta atctccgcca gcacttccgg gtccagacca
    19081 ttagcctctt tttcctgcca gttttgcgtt tctggcggcc aggtatccag caaaccaaga
    19141 aatgccacct gttcgccacg ggcacgcagt cgcgccgcaa tgccctgcgc cagcgtaccg
    19201 ccaagggaat accccagcag gtaataaggg ccgtgcggtt gttgttcaag taacgttgcc
    19261 agatgcgctt cacagacttc atccagattt gccgcggtat gcatggggcc attggggcgc
    19321 ggcgactgaa tgccgataat cgaccattgt ggatcgatat aacgcgagag cacgctaaac
    19381 tgccaggcaa aaccggatgc cggatggaaa caaaacagcg tcgggccatt accttcacgc
    19441 aacggcagaa tggtttcgaa tcccatacgc cgggtgctgt cttcttcagc atcaataatc
    19501 gttgccagtt tagcgacggt tgacgcgacc atcacttgcc ccggcgtcac ctggcgggca
    19561 acctgccgac ttaactgcgc tgccagtttc attgccagta gcgaatgacc accaagcgca
    19621 aagaaatcag catcggcatc ctgcacgtca caacccagca acgacgcgaa tgccgcggca
    19681 ataatcgttt cactgcccgc ttttggcgca cgccccggcg cttgtgcctt cagttcaggc
    19741 aacggtaagg ctttgcgatc cagcttgccg ttggcgctaa gaggtaacag tggaagttgc
    19801 agcagaacca cgggcaccat atgtggtggc aatgtttcgc gaagctgcgc ctgtaatgcg
    19861 ctggtatcca acggcagacc tgattgcgac accagatagc ccaccaactg acgcgcatca
    19921 ccaccggtgg ctgccgcctg gttaatcaca caggcgtggg taacggcttg ttcgacatcc
    19981 ggcagcgcct gcatcacgcg atcgatttcg cccagttcaa tacgctgccc gcgaattttt
    20041 agctgatcgt cactgcgccc gaggtactcc accgcgccgt tatccagcca gcgggcaacg
    20101 tctccggtac ggtacatccg ttcaccaggg acaaaaggat cggcaataaa gcggctggcg
    20161 gtcagatcgg gtcgtccaag atacccctgc gccagttgaa tgccggtgag atagagatca
    20221 cccgccacac ccggcggcac cggatgcatc atcgcatcaa gaatacgcag acccgtattc
    20281 cataccggat aaccaatcgg cacactgctg ccgcgcacct gtgccagttc ctcgccaaaa
    20341 gccggatacc agctgacatc taccgccgct tccgtcgggc catatagatt atgcaacggc
    20401 acgctggtta actgttgcca ttcgcggcat aaatcagccg gtaaggcctc accactacag
    20461 aaaacctgtt tcaacgtcgc gcaactctgg cgagcggttt gcggcgtcag cgatgcaaca
    20521 aatgctgcca gcatcgacgg cacaaagtgc gtggtcgtta cgccatattc ggcaaagaat
    20581 tgctgcatag cgagcgggtc gcggtgcgct tccggttcag ccatcaccag tttagccccg
    20641 gcaataaacg gccagaaaaa ctcccacacc gagacatcaa aactgcacgg cgttttttgg
    20701 gcaacgacat cttcgcctgt aagcagataa tgattttgca tccacaacag gcggttaacg
    20761 atagccgtct gcccgaccat tacccctttc ggcctgccgg tggagccaga ggtaaagatg
    20821 atataagccg tgtgatgcgg ttgtgaaagt tgcagcggcg cactgccctg cggtttaagc
    20881 ggggcgttat agcaaaggtt ggttaaatct ggaacatcgg caaagcgcgg cagttgatcg
    20941 tcggtggtga ttaacagcga cggacgcgca tcttccagca tcattttcag gcgatcgtcc
    21001 ggatagccgg tatccagcgg tagccaggcc gcgccagctt caactatcgc atgtagcgcc
    21061 agggtcaaaa agaccgagcg cggtagcgcc accgccacgc tgtcgcccgg tttaacgcca
    21121 cgctcacgca gcagattcgc cagcgccacc acctgctcgc gcatttcccg atagctgaac
    21181 tggtaacgcg catctgccag cgccggagca tccggtgttt ttgccgcttg ttctgccacc
    21241 agcgcgctca gcgtggtttc tggaatctca acctgagtgg cgttgatctg cgccagctgc
    21301 gcatactcac ctggcagcat aatatcgaca tcgccgcaca acagcgccgg atccgcggcg
    21361 aactgggcaa tcagcatttt caggcgttca gcatgctgga ttaacgttgg ctcatcgtaa
    21421 cgctgtttat tggcgaggat ctcaatactc aaatcaccgt gttcatccgg gaacagggcc
    21481 agttcaaggt cattaaccgg accggttgcc aaggtatggg tttgcgcctg aacaccagga
    21541 atatccagtt ggtaatcaaa taccttgata ttgagtaccg gaccaaacag cggttcatca
    21601 cctgccgctc gcccgctgtc acggacaatt tgttcggcat cgtaacgttg atgacgacgc
    21661 atttttttca gttgtgctgc cagtcgggtt gccagttccg gcagcgtttc ttgcgccgca
    21721 atgtgaatac ccaacggcaa aacgttgagc acgggtccgg tagccgtcag cgccgccgag
    21781 cccagtcgac gcataaagat aaatccagcg gcgtagtcca tgcgattgca caatcgcccc
    21841 agccacaaag ccgtcagcgc aagggctaaa tcggtacgct gcacacctga aagttgcgta
    21901 gccaactggc ggaattcccc gtcggtaaat tccattttca gacgtaaaat atctgccgaa
    21961 gcgctgcgcc ccggtaaagg tgccggagaa agtgacgcgg gcggcggcag ttgacgacgc
    22021 tgttctgccc agaatgccgc atcacgctgc caggcttcgc tttcgcggta ttgctggtac
    22081 tcttccacta catcagcgaa aggcgtaaac ggcgaagcag gcgttggttc accacgcagc
    22141 catgtgcagt aaatattggc gatctggcgg gtaatggccg ggaaactgaa gccatcgacc
    22201 agcaaatggt gataacgctg ataccagtac cagcggttat ccgccacctg tatcagctga
    22261 tgaaagacca gtggtttacc gctatcgacg cgcagatctt gttgcaaatc cgcctgcatt
    22321 aatgcctgcg cagtaccgtg cggatcaatg ttggttcgca ggtcgataat ttctggcagt
    22381 tcgaacgtca gcgcatcatc gacccactgc cagacttcgc cgttatcttc cgtaaaacgc
    22441 atccgcagcg tatctgcttg cgctagtccg tcaaccaccg cgcgggccag taatggcgca
    22501 tcaacctctc cggttaactc aacgtaatgc gctacgctcc aggcggaggg taaatccgac
    22561 agtttttctg ccatccagat gccgggctgt gcggcgacca aaggtaaatg ctggctcatt
    22621 gcgcctcctg caactgggtg aaattcgccg gtgtcagagt acgccagtgg gcttcaagcc
    22681 actgctggca ggactcttgt gactgcggct gacacacaat gtcccagcct gccggtaagg
    22741 cgcattgttg cggccacaga ctgaattgcc cctgcgcatt gcgcaaaatg taaaacgctc
    22801 cctgtggatc atcgaaggga ttactgaatg ccatattcaa ctcctgtcat ggaaaagtgg
    22861 ttgccagagg tcgattagcc cctgcatcaa gccaccgcgc caacaaagcg catcatgtcc
    22921 gccgtcaacc tggcgccaga aaatggattc ttttatgggg tgtaattgcg catacagcgc
    22981 ctgattggcc cgcataatca tcggctcgcg aatacccgct tccagcacaa tgcgcagacc
    23041 ttcggcgcta acttcaccag ctttaagctt ttcaagtaac acgccctctt gctgcccgcc
    23101 ccgatgcggc caccagtacg atcctgactg gcttaataca caaccaaaac gttcaggcca
    23161 gtgcagtccg gcatacagcg cggaaagtcc accaaaactc tgcccggcaa ccacggtgcg
    23221 atcggcgcga tcgctaaaag gggcaatagc tttcaccaag ggtaataact cttgctgtac
    23281 tgcgagccag aaatccgcat tacacggcag ttcgtgagcg cggtgcgtgg tgtcgatagc
    23341 gtcgatcaac acatacacgg cgggaggaag ttgctgacga tgggtcagcg aagtcagcac
    23401 tggccagacg ggcatacttt gcgcccaaaa ttcgccatcg agcaaaactg ccagcgggcg
    23461 ttcttctgct gttgcatcgc cggtggtaaa aatccataca cgacgtgaat ttttcaaccg
    23521 ttcacttttc cagataattt ctttggctgg tatttctggc gcttgcggac aatcccatcc
    23581 cggttgcaga ggcgcttgcg gcatttcgag tgcagaaaca gcgtgccctc gcccgccttt
    23641 ccagctttgt ggattcagcg gatcggctat tgcctggggt aatagttttc gccagccttc
    23701 acgtaattcg aggcgatcgg gggatggtgc agaaaaaatg tcatcgcgtt cggtgggaat
    23761 aaagcagtag ctgccgcgcc agttggcatt gagttgtgtc gtccactgcc agacatcagt
    23821 acctgcaatg cgctgcatcg actggggctg gctgttctga tgatgatcgg tcacaccagt
    23881 gatgtagacc catacgcgct ttatcggcga gtattcttca gaaccttggg gatcacgcca
    23941 ccagaaagtg acctcaaaca tttcgtcatt cagacgctgc cattccgggc catgtttcga
    24001 ctgccaccag ctctcacttc ctacttttaa cgccgtcaca ccataacccc atgtttactg
    24061 tgcaattttt cattgattgc agaaatatat tgataatatt attgataact atttgcattt
    24121 gcaatagcgt aatggcgcgc cgtgggaagc gcggacatta attaaccaac tgcactgcgt
    24181 gtctttcagg atcaaaggtt ttcgcggtag cgggatgcgt cgtgttgagg acgaccatgc
    24241 ccgacagttg caattcgtgg caaaaatgca ggaataaaac aatgaacaag aagattcatt
    24301 ccctggcctt gttggtcaat ctggggattt atggggtagc gcaggcacaa gagccgaccg
    24361 atactcctgt ttcacatgac gataccattg tcgttaccgc cgccgagcag aacttgcagg
    24421 cacctggcgt ttcgaccatc accgcagatg aaatccgcaa aaacccggtt gcccgcgatg
    24481 tgtcggagat catccgtacc atgccaggcg ttaacctgac cggtaactcc accagtggtc
    24541 agcgtgggaa taaccgacag attgatattc gcggtatggg tccggaaaac acgctgattt
    24601 taattgacgg caaaccggtc agcagccgta actcggtgcg tcagggctgg cgtggcgagc
    24661 gcgatacccg tggtgatact tcctgggtgc cgcctgaaat gattgaacgt attgaagttc
    24721 tgcgtggtcc ggctgcagcg cgttatggca acggcgcggc gggtggcgta gttaacatca
    24781 ttaccaaaaa aggcagcggt gagtggcacg gttcctggga cgcttatttc aatgcgccag
    24841 aacataaaga ggaaggtgcc actaaacgca ccaacttcag tctgaccggc ccgctgggcg
    24901 acgaattcag cttccgcttg tatggcaacc tcgacaaaac ccaggctgac gcgtgggata
    24961 tcaaccaggg ccatcagtcc gcgcgtgccg gaacgtatgc cacgacgtta ccagccgggc
    25021 gcgaaggggt gatcaacaaa gatattaatg gcgtggtgcg ctgggacttc gcgcctctgc
    25081 aatcactcga actggaagcg ggttacagcc gccagggtaa cctgtatgcg ggcgataccc
    25141 agaacaccaa ctctgacgct tacactcgct cgaaatatgg cgatgaaacc aaccgcctgt
    25201 atcgccagaa ctactcgctg acctggaacg gtggctggga taacggagtg accaccagca
    25261 actgggtgca gtatgaacac acccgtaact cgcgtattcc ggaaggtctg gcgggcggta
    25321 ccgaagggaa atttaacgaa aaagcgacac aggatttcgt cgatatcgat cttgatgacg
    25381 tgatgctgca cagcgaagtt aacctgccga ttgatttcct cgttaaccaa acgctgacgc
    25441 tgggtacgga gtggaatcag caacggatga aggacttgag ttccaatacc caggcgctga
    25501 ccggggcgaa caccggcggc gctattgatg gtgtgagtgc caccgaccgt agcccgtatt
    25561 caaaagcaga aattttctcg ctatttgccg aaaacaacat ggagctgact gacagcacca
    25621 tcgtaacgcc ggggctgcgt ttcgatcatc acagtattgt cggcaataac tggagcccgg
    25681 cgctgaacat atcgcaaggt ttaggcgatg acttcacgct gaaaatgggc attgcccgcg
    25741 cctataaagc gccgagcctg taccagacta acccgaacta cattctctac agtaaaggtc
    25801 agggctgcta tgccagcgcg ggcggctgct atctgcaagg taacgatgac ctgaaagcag
    25861 aaaccagcat caacaaagag attggtctgg agttcaaacg cgacggctgg ctggcgggcg
    25921 tcacctggtt ccgtaacgat tatcgcaata agattgaagc gggctatgtg gctgtagggc
    25981 aaaacgcagt cggcaccgat ctctatcagt gggataacgt gccgaaagca gtggttgaag
    26041 gtctggaagg atcgttaaac gtaccagtta gcgaaacggt gatgtggacc aataacatca
    26101 cttatatgct gaagagtgaa aacaaaacca cgggcgaccg tttgtcgatc atcccggagt
    26161 acacgttgaa ctcaacgctg agctggcagg cgcgggaaga tttgtcgatg caaacgacct
    26221 tcacctggta cggtaagcag cagccgaaaa aatacaacta caaaggtcag ccagcggttg
    26281 gcccggaaac caaagaaatc agtccttaca gcattgtggg tctgagcgcg accagggatg
    26341 tgacgaagaa tgtcagtctg accggcggcg tggacaacct gttcgacaaa cgtttgtggc
    26401 gtgcgggtaa tgcccagacc acgggcgatc tggcaggggc caactatatc gcgggtgccg
    26461 gggcgtatac ctataacgag ccgggacgta cgtggtacat gagcgtaaac actcacttct
    26521 gatgctaacg tcagattgtt gataaagtgc gcgtcgttca tgccggatgc ggcgtgaacg
    26581 ccttatccgg cctacaaaaa tcttgccaat tcaatatatt gcaggaccat gtaggcctga
    26641 taagcgtagc gcatcaggca gtttagcgtt tgtcaccagt ctctaatatg gtcgacatga
    26701 aaactacgca tacctccctc ccctttgccg gacatacgct gcattttgtt gagttcgatc
    26761 cggcgaattt ttgtgagcag gatttactct ggctgccgca ttacgcgcaa ctacaacacg
    26821 ctggacggaa gcgcaaagcc gaacatttag ccgggcggat cgctgcaatt tatgcgctgc
    26881 gggaatatgg ctataaatgt gtgcccgcaa tcggcgagct acgccaaccg gtgtggcctg
    26941 cggaggtata cggcagtatt agccactgcg gggctacggc attggccgtg gtttcccgtc
    27001 aaccgattgg cgttgatatc gaagaaattt tttctgcgca aacagcgacc gaattgacag
    27061 acaacattat tacaccagca gaacacgagc gactcgcaga ctgcggttta gccttttctc
    27121 tggcgctgac actggcattt tccgccaaag agagcgcatt taaggcaagt gagatccaaa
    27181 ctgatgcagg ttttctggac tatcagataa ttagctggaa taaacagcag gtcatcattc
    27241 atcgtgagaa tgagatgttt gctgtgcact ggcagataaa agaaaaaata gtcataactc
    27301 tgtgccaaca cgattaattg acaacatctg gtacgattcg cccgcagcca tcactgaccg
    27361 cgggcgaaag tgtaaagcag gtgccttacc atcctgacct gacaaccgga tatgcgggga
    27421 ttgctccccg cacaacggct acttcttcgg ttcgtaagcg agaacagcct taaactcaat
    27481 attacgttcc tttacggtga actcacacag cgaatccccg accagaagcg taaatcccag
    27541 caccgttaaa cacagcacta tgactgccgc aagggcatat ttcgtcagca tgtttatatt
    27601 gcctccatgc gaagaaggga ctaccatcca aattgttcag gtttgggtag gtagccccag
    27661 ggttgataga aatatcgtcc tggggcttca tctttccaga cctcagagta aacctgaaac
    27721 cggaaagctt caggcacccg cagttatctt acccttgctt agcaaaatag ctgtttattt
    27781 atacagtaag tcctgtttcg gacttctcac tccccatttg atcaactgaa gctgaacccg
    27841 tttttttctg catgcctcaa tcgtcaaaat tcttcgccac agtcagcact gccataactt
    27901 gtcacattgc aaaagtagcc aaattgcttc tgtcataatc agttcaccat caccaaaaaa
    27961 aagaaacatt ccagaacttc cgcatctcgc ccagccgctc ccacttctat actgaataga
    28021 aaacgccaac ataagagaaa cctatgccat tacccgattt tcatgtttct gaacctttta
    28081 cactcggtat tgaactggaa atgctggtgg ttaatccgcc gggctatgac ttaagccagg
    28141 actcttcaat actgattgac gcggttaaaa ataagatcac ggccggagag gtaaagcacg
    28201 atatcaccga aagtatgctg gagctggcga cggatgtttg ccgtgatatc aaccaggctg
    28261 ccgggcaatt ttcagcgatg cagaaagtcg tattgcaggc agccgcagac catcatctgg
    28321 aaatttgcgg cggtggcaca cacccgtttc agaaatggca gcgacaggag gtatgcgata
    28381 acgagcgcta tcaacgaacg ctggaaaact ttggttatct cattcaacag gtgaccgttt
    28441 ttggtcagca tgttcatgtt ggctgcgcca gtggcgatga cgccatttat ttgctgcacg
    28501 gcctgtcacg gtttgtgccg cacttcatcg ccctttccgc cgcgtcgcca tatatgcaag
    28561 gaacggatac gcgttttgcc tcctcacgac cgaatatttt ttccgccttt cctgataatg
    28621 gcccgatgcc gtgggtcagt aactggcaac aatttgaagc cctgtttcgc tgtctgagtt
    28681 acaccacgat gatcgacagc attaaagatc tgcactggga tattcgcccc agtcctcatt
    28741 ttggcacggt ggaggttcgg gtgatggata ccccgttaac ccttagccac gcggtaaata
    28801 tggcgggatt aattcaggct accgcccact ggttactgac agaacgcccg ttcaaacatc
    28861 aggagaaaga ttacctgctg tataaattca accgtttcca ggcctgtcgc tatgggctgg
    28921 aaggcgtcat taccgatccg cacactggcg atcgtcgacc gctaacggaa gacaccttgc
    28981 gattgctgga aaaaatcgcc ccttccgcac ataaaattgg tgcatcgagc gcgattgagg
    29041 ccctgcatcg ccaggtcgtc agcggtctga atgaagcgca gctgatgcgc gatttcgtcg
    29101 ccgatggtgg ctcgctgatt gggctggtga aaaagcattg tgagatctgg gccggtgact
    29161 aagtagggaa ttgccttaca gaagaatatc cctgacaatg gtgttttaac ttacatttaa
    29221 caatgttatg aaacaccctt tagaaacctt gactaccgca gcaggcattt tgctgatggc
    29281 tttcctctct tgcctgctgc tgcccgcccc cgcactgggg ctgacgctgg cacaaaaact
    29341 ggtgaccatg ttccatctga tggatcttag ccagctttac actttattgt tttgtctgtg
    29401 gtttttagtg ctgggcgcta ttgagtattt tgttctgcgc tttatctggc gacgctggtt
    29461 ctcgctggcg gattaaacgt cgattatcgc cgtacttcgc ggcatacttt gcttattctc
    29521 cttcgcctaa aggaacgttt atggataagc aatcactgca cgaaacggcg aaacgcctgg
    29581 cccttgagtt accctttgtc gagctttgct ggccttttgg cccggagttc gatgttttta
    29641 aaattggcgg caaaattttt atgctgtcgt cggagctgcg cggcgtcccc tttatcaatc
    29701 tgaagtccga tccacaaaaa tccctgttaa atcagcagat atacccgagc attaagccag
    29761 ggtatcacat gaataaaaag cactggattt cggtgtatcc cggcgaggaa atctccgaag
    29821 cgttacttcg cgatctgatc aacgattcgt ggaatctggt ggttgatggt ctggctaaac
    29881 gcgatcaaaa aagagtgcgt ccaggctaaa gcggaaatct atagcgcatt tttctcgctt
    29941 accatttctc gttgaacctt gtaatctgct ggcacgcaaa attactttca catggagtct
    30001 ttatggatat catttctgtc gccttaaagc gtcattccac taaggcattt gatgccagta
    30061 aaaaacttac cccggaacag gccgagcaga tcaaaactct cctgcaatac agcccatcca
    30121 gcaccaactc ccagccgtgg cattttattg ttgccagcac ggaagaaggt aaagcgcgtg
    30181 ttgccaaatc cgctgccggt aattatgtgt tcaacgaacg taaaatactt gatgcctcgc
    30241 acgtcgtggt gttctgtgca aaaaccgcga tggacgatgc ctggctgaag ctggttgttg
    30301 accaggaaga tgctgatggc cgctttgcca cgccggaagc gaaagccgcg aacgataaag
    30361 gtcgcaagtt cttcgctgat atgcaccgta aagatctgca tgatgatgca gagtggatgg
    30421 caaaacaggt ttatctcaac gtcggtaact tcctgctcgg cgtggcggct ctgggtctgg
    30481 acgcggtacc catcgaaggt tttgacgccg ccatcctcga tgcagaattt ggtctgaaag
    30541 agaaaggcta caccagtctg gtggttgttc cggtaggtca tcacagcgtt gaagatttta
    30601 acgctacgct gccgaaatct cgtctgccgc aaaacatcac cttaaccgaa gtgtaattct
    30661 ctcttgccgg gcatctgccc ggctatttcc cctcagattc tcctgatttg cataaccctg
    30721 tttcagccgt catcataggc tgctgttgta taaaggagac gttatgcagg atttaatatc
    30781 ccaggttggg gatttagcgg gtattgagat cgatcacacc acctcgatgg tgatgatttt
    30841 cggtattatt tttctgaccg ccgtcgtggt gcatattatt ttgcattggg tggtactgcg
    30901 gaccttcgaa aaacgtgcca tcgccagttc acggctttgg ttgcaaatca ttacccagaa
    30961 taaactcttc caccgtttag cttttaccct gcaggggatt atcgtcaata ttcaggcggt
    31021 attctggctg caaaaaggca ccgaagcggc agatattctg actacctgcg cgcagttgtg
    31081 gatcatgatg tatgcgctgc tttcagtctt ctcgttgctg gatgttattt tgaatctggc
    31141 gcagaaattc ccggcggcat ctcagttacc gctgaaaggg atatttcagg ggattaaact
    31201 gatcggcgca atcctggtcg gcattttgat gatctcgctg ctgattggtc agtcgccagc
    31261 gattctgatc agcggtcttg gtgcaatggc tgccgtgctg atgttggtat ttaaagatcc
    31321 gattcttggt ctggtggcag gtattcagct ttccgcgaac gatatgctga aactgggcga
    31381 ctggctggag atgccgaaat acggcgcgga tggcacggtg atcgatattg ggttaaccac
    31441 cgtcaaagtg cgtaactggg acaataccat taccactatt cccacctggt ctctggtttc
    31501 tgactccttt aaaaactgga gcgggatgtc agcatctggc gggcgacgta ttaagcgcag
    31561 tatcagtatt gatgtcacca gtattcgttt tcttgatgaa gacgaaatgc aacgtctgaa
    31621 taaagcgcac ttgttaaaac cttatttaac cagccgccat caggaaatta atgagtggaa
    31681 tcgccagcaa ggttctacgg agtcgatatt aaacctgcgc cgaatgacca atattggaac
    31741 ctttcgtgcc tatctgaacg aatatctgcg taaccatccg cggattcgta aagatatgac
    31801 cttaatggta cgccaactgg ctccaggtga taacggttta ccgctcgaga tctacgcgtt
    31861 taccaacacc gtggtgtggc tggaatatga aagcattcag gctgatatat tcgatcacat
    31921 atttgcgatt gtcgaagagt ttggtctgcg acttcatcag tcgccagccg gcaatgatat
    31981 tcgctctctg gcgggtgcat ttaagcagta attaaaaaaa ccgctctcat cgaatggatg
    32041 agagcggaca tcgttttgtc ggatgtagcg tgaatgcctt atttccgacg cagcgtttta
    32101 aatgccacaa acaggaatac aatccacacc ggcagcagga tcgctgacaa gcgcatatca
    32161 tccatcgtgc acatcagcag caaaatcatg ccgaggaagg caatgcaaag atagttgccg
    32221 aacggataaa gcagcgcctt aaactgtgtt tcacgtccct gacgtcgcat cgccgcgcga
    32281 aaacgcagat gcgccaggca gatcataatc cagttcaaca gcagcgttgc taccaccagc
    32341 gccatcagca gaccaaacgc tttttgcggc agcagatagt tgattaacac caccagcgaa
    32401 gtgatcgctc cggaaagcat cagcgagtta atcggcacgc cgcgatggct gacgcgagtc
    32461 aaaaacttcg gcgcattacc ctgcacagaa aggccaaaca gcatgcggct gttagagtaa
    32521 accccgctgt tatacactga cagcgatgct accagaatga cgaagttcag cgcagaagct
    32581 acctcgttgc tgtcgagatt atggaaaatc atcacaaacg ggctactgtt ggatttcact
    32641 tccacccacg gatagagcgc cagtaaaacc accagtgaac agatgtaaaa cagcaggatg
    32701 cgatacacca cctgatttac cgcttttgga atgctttttt ccggatcgcg cgcttcagcg
    32761 gcagtaatcc caatcagctc cagaccgccg aaggagaaca taattaccgc cagcgacaaa
    32821 atcagcccat tccagccggt ggcgaagaaa ccaccgtagc gccagaggtt gtcgatactg
    32881 gctttctcgc cgccgtgacc agaaaacagc agccacaggc caaagccgat cataccgatg
    32941 attgccagca ctttaatcaa cgcaaaccag aactcggttt cgccatataa gcgcacgttc
    33001 accaggttaa cggcgttgat gataataaag aaggcggcag cccaaatcca cgttggaaca
    33061 tccgggaacc agtactgcat atagatgccc gcagcggtca gctctgccat tcccaccagc
    33121 acgaacatta cccagtagtt ccagccagag aggaagcccg caaacggtcc ccagtattta
    33181 taggcaaagt gggcaaatga accggatacc ggctcttcga ccaccatctc gccgagctgg
    33241 cgcataatca ggaaagcgat gatcccggcg acgccgtagc ccagcaatac agccggaccc
    33301 gccatctgaa tcgccgggcc aatgccaaga aacagaccag taccaattgc gccacccagc
    33361 gcaatcagtt gaatatgacg gttatgtaat ccgcgatgaa gcgtcggctc ttgatttgac
    33421 gcagtatctt ccgatacggt tgacgcgttt ttcacgcctt tcccctgtgt gtcttttttg
    33481 ttgaggggca ccttttaaca tttagtgccc atcgtcgcaa gacacaatcc acacggttaa
    33541 acggggtatc ctgcttttat ttccgtaccc gatgtcggtg cagccacatc agcttatacg
    33601 ccgccgggat aataaacagc gacagcaaag gcgcggtgat catgccgcca atcatcggtg
    33661 cggcaatccg gctcatcacc tctgaaccag cccccgttcc ccacagaatc ggcagcagac
    33721 cggcgataat caccgccacc gtcatcgctt tcgggcgcac gcgcagtacc gcgccgtgat
    33781 acaacgcctc atccagcttc tgctcactga atgtttgcgg attattcaac gacggctcgg
    33841 cctctatggc gtgacgtaaa tacatcagca tcaccacgcc aaattcggcg gcgcccccgg
    33901 caagggcaat aaaaccggtg cccgttgcca cagaaagatg aaagcccatc caccacagca
    33961 accagatgcc gcccaccagc gcaaacggta cgctgctgat aatcagcaac gcttcgccca
    34021 cccgacggaa tgccagatac aacagcacga agatgatcat cagtgtcatc ggcaccatga
    34081 gtttcagctt atggttggcg cgctccagta gctcgaactg cccggagaat gccacgctgg
    34141 tgcccggttt taactgcact ttttcaacta tcgctttttg caaatcgtga accaccgaca
    34201 ccatgtcacg atcgcgggca tcgatataaa tccagctcgt cgggcgcgca ttctcggttt
    34261 tcagcatcga cggtccggta gagactttaa cgtcggccac gtctgccagg gtgatttgct
    34321 gcttcatcgg cgtcaggatc ggtagctggc gcagtgcctg cgggctatcg cgccagcttt
    34381 gcggataacg cagattaatg ggataacggg caatcccttc caccgtttcg ccaaccatcg
    34441 ccccgcccac cgcagaagtc acaaacaact gcacatccgc caccgtcata ccgtaacgcg
    34501 cggctttttc acggttaatc tcaacgttga tatagcgccc accttccaga cgctcggcaa
    34561 gcgcagaagc cacgcctggc accgttcgcg ctacttcttc aatttgctca gccatcgcgt
    34621 cgatatccgc cagcacagtg ccggaaactt taatgccgat ggggctttta atgccggttg
    34681 agagcatatc gatacggtta cgaattggcg gcacccacag attcgccagc cccggcagcc
    34741 gcacggtgtt atccagttcc tcaatgattt tgtccatcgt catgccaggc cgccactgat
    34801 cctgcggctt aagctggatg gtcgtttcaa ccatctcgag cggagcagaa tcggtggcgg
    34861 tttccgcttt cccggttttg ccaaataccc gcgccacttc aggtacgctc ataattagct
    34921 tgtcgttttt ttgcagcata ctcgccgcct ctgctgcgga aatccccggc agcgtcgatg
    34981 gcatatacaa caagtcgcct tcattgatct gcggtaaaaa ttccccgcca actttattga
    35041 gcggccagag aaccgtcagc accgaaagcg ctgccaccaa cagcgtggtt ttcggccagt
    35101 gcagtacttt cagcaataga ggatgataaa cacgaatcaa aaagcgattg agcgggttac
    35161 tgctttccgg cggaattttg ccacggatcc agtaacccat caggatcggg atcactacga
    35221 tcgccagcag cgccgcaccc gccatcgcat acgttttggt gaacgccagc gggccaaaca
    35281 gacgcccttc ttgcccttcc agggtgaaga ttgggataaa cgacagcgtg ataatcagca
    35341 gactgataaa cagcgccggc cccacttcaa cagatgcatc ggtaatcacc tgccagcgcg
    35401 ttttattatc cagcgtggcg tcaggatgct ggtgctgcca ctcttccagc cgtttatgcg
    35461 cattctcgat catgacgata gcagcatcga ccatcgcccc gacggcaatc gcaatgccac
    35521 ccaacgacat aatattggca ttcagtccct ggaagggcat gacaataaaa gcaatacaca
    35581 accccagcgg caacgaaata atcgccacca gcgccgagcg cacatgccag agaaacagcg
    35641 cacagactac cgccaccaca ataaactctt ccagcaactt gccgctgagg ttgtcgatgg
    35701 cgcggtcaat gagctggctg cgatcgtatg ttgtaactat ctccacgcct tccggcagac
    35761 tacttttcag cgtttccagt ttgtccttca cggcggcgat cacttctcgg gcgtttttgc
    35821 cggagcgcag gatcaccacc ccgcccgcca cttcgccttc gccgttcagt tcggcaatgc
    35881 cccggcgcat ctccgggcca acctggacct tcgcaacatc gcgcagataa acgggcacgc
    35941 cattttcact ggcttttaaa acgatgtgat taaagtcgtc gagcgtttgc agatagccgc
    36001 tggcgcgcac catatattcc gcttccgcca gttcgatcga cgaaccgccc gcttcctggt
    36061 ttgaagcatc cagcgcgctt tttacttcgg cgagactgat gccatactgc gccaggcgct
    36121 ggggatcgat aaccacctga tactctttca ccacaccgcc caccgacgcc acttccgcaa
    36181 cgtcagggat ggttttcagc tcatatttga gaaaccagtc ctgtaatgag cgtaaatcgg
    36241 ccagatcgtg cttaccgctg cgatccacca gtgcatattc atagatccag ccaacacccg
    36301 tggcatctgg ccccagctcg gcgctgactc ccgcaggcag cttaccctgt acctggttga
    36361 ggtactccag cacccgcgaa cgcgcccagt acggatcggt accatcttcg aaaatgacat
    36421 acacataaga gtcgccaaac tgcgagaaac cacgcacagt cttcgcgcca gcgcaccgac
    36481 aacatggtgg tggttagcgg ataagtcacc tgattttcaa cgatttgcgg tgcctgcccg
    36541 ggatagctgg ttttaataat cacctgcaca tcggagagat ccggcagcgc atccactggc
    36601 gtattaatga tggtccaggt gccccagatg ctaagaaaca acgcgcccat cagcaccaaa
    36661 aaacggttcg ccaccgagcg acgaataatc cattcaatca ttggttattc cctcaatgcg
    36721 catgggtagc actttcagag cgcatccgct ccagtgcgcc agaaatattg gcttcggaat
    36781 caatcaggaa aaggccgctg gaaaccacct tttcaccttc cgccagacca gagcgtaatg
    36841 cggtgacacc ttgcgatgcc tggaaaacgg caacgcgttt cggtacaaag cgcccgtcgg
    36901 catcaatggt aatcacccgc tgttcgctac cggtatcaat cagcccttgt gacggaatga
    36961 gcagcatcgg ttcgctggcg gtattgagtt gcaaccaggc gttcatgccc ggttttagcg
    37021 cctcgtcggc gttgtcgact tccagacgca gctgcagcgt gcgggtcgcg gcatccacgc
    37081 cgggtagcag cgtccatttg cggatggtga gtgttttatc cggtcgtgcc ggaacggtga
    37141 gcgtaaactg cgaggcatct ttcaccagcc aggcgataga ctccgggatc gcagcagtga
    37201 cccacaccgg gtccataccc tgaattttcg ctaccacgtt atctttggcg atattcattc
    37261 ccgcgcgcag atcaaacgcg gtgatcacgc catcaatggg cgctttgagc gtaaagcgag
    37321 tctggatttt ttgcgtggcg atcaggcggc gaatatccgc ctccggcatt cccgccagtc
    37381 gcagccgctc aagaatgcct tcagtctggg tcgccgtacc gccggtttcg cgcagcagta
    37441 aatactcact ctgcgcttcc acccagtcag gaatggtcag gtcgagaagc ggtgtgccct
    37501 tttgtacttt atcgcccacg gtaagcggat acaccttgtc gataaacccg gcagcgcgag
    37561 cctgcacaat ggcatactga tactcgttgt aactgacatt cgccgggaaa ctctgggcaa
    37621 aagtcagcgg tccgcgcgtg acggtagccg ttttcacccc cagattctgc gtctgagtcg
    37681 ggtcaatgcg cacaccagac gcagaactct cttcatcggc atatttcggc accagatcca
    37741 tatccataaa cggcgattta cctggtttat cgaaccgcgt attggggtac atcgggtcgt
    37801 accagaataa gattttacgt
//
LOCUS       DAJVUY010000018        37234 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.018, whole genome shotgun sequence.
ACCESSION   DAJVUY010000018 DAJVUY010000000
VERSION     DAJVUY010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37234
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.018"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..809)
                     /locus_tag="OQQ72_000850"
     CDS             complement(<1..809)
                     /locus_tag="OQQ72_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001019361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HCS2010667.1"
                     /translation="MTIEKSRFSSGAAPQPNVNTGVINGNDFAAIVPVIAGRIGGREA
                     NIVSAKALHKALGVGRDFTNWIKGRIDQYGFIAGTDFIRVENLSTPKRASAKTRQQIE
                     HDYLLSLDMAKEVAMVERNEQGRAIRRYFIQCEEELQRSVPEIAARYRRQLKARLSAA
                     NNFKPMCDALNMARAEMGKTTQQRHYSNESNMIARIVLGGMTAKQWAQANGITGEPRD
                     SMNAAQLEHLAYLESTNITLIDMGMEYEQRKGELTRLSQRWLAKRLEVNHA"
     gene            complement(823..1254)
                     /locus_tag="OQQ72_000851"
     CDS             complement(823..1254)
                     /locus_tag="OQQ72_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001437021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010668.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGSHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            complement(1254..1457)
                     /locus_tag="OQQ72_000852"
     CDS             complement(1254..1457)
                     /locus_tag="OQQ72_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS2010669.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            complement(1570..2418)
                     /locus_tag="OQQ72_000853"
     CDS             complement(1570..2418)
                     /locus_tag="OQQ72_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010670.1"
                     /translation="MKKLPPAPFFRLNRAAELLEIDIDDLLIMAAAESIYLSAYLCGY
                     DGTLHSIASLYRNCSLFPDVKEDCLLLADIITEVEDEKSFKAGVVNHIDCHVLGLWHV
                     NASYILDIAGLDSIDTPARIFSPAHRKRELDVSANYYFFLDYTKHAFHEISVEDLYIT
                     RPWVEYIGECMDKNQPIYSPETRINLQALYEDVKNVEHGNRERHRQKREICLLALIYV
                     KRHYPEECKGKNGKETNEAWANATINHWALLGGGYDEPSIDYLKKLIADADRTPEERT
                     TAGKKR"
     gene            complement(2514..3773)
                     /locus_tag="OQQ72_000854"
     CDS             complement(2514..3773)
                     /locus_tag="OQQ72_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2010671.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKRKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(3964..4827)
                     /locus_tag="OQQ72_000855"
     CDS             complement(3964..4827)
                     /locus_tag="OQQ72_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCS2010672.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            4954..5670
                     /gene="rph"
                     /locus_tag="OQQ72_000856"
     CDS             4954..5670
                     /gene="rph"
                     /locus_tag="OQQ72_000856"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HCS2010673.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            5736..6377
                     /gene="pyrE"
                     /locus_tag="OQQ72_000857"
     CDS             5736..6377
                     /gene="pyrE"
                     /locus_tag="OQQ72_000857"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCS2010674.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(6414..7010)
                     /gene="slmA"
                     /locus_tag="OQQ72_000858"
     CDS             complement(6414..7010)
                     /gene="slmA"
                     /locus_tag="OQQ72_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HCS2010675.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(7117..7575)
                     /gene="dut"
                     /locus_tag="OQQ72_000859"
     CDS             complement(7117..7575)
                     /gene="dut"
                     /locus_tag="OQQ72_000859"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCS2010676.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(7553..8773)
                     /gene="coaBC"
                     /locus_tag="OQQ72_000860"
     CDS             complement(7553..8773)
                     /gene="coaBC"
                     /locus_tag="OQQ72_000860"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HCS2010677.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRIRKNLDLICANDVSQPTQGFNSENNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            8945..9613
                     /gene="radC"
                     /locus_tag="OQQ72_000861"
     CDS             8945..9613
                     /gene="radC"
                     /locus_tag="OQQ72_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HCS2010678.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAE
                     RGWI"
     gene            9830..10066
                     /gene="rpmB"
                     /locus_tag="OQQ72_000862"
     CDS             9830..10066
                     /gene="rpmB"
                     /locus_tag="OQQ72_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCS2010679.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARSEKY"
     gene            10087..10254
                     /gene="rpmG"
                     /locus_tag="OQQ72_000863"
     CDS             10087..10254
                     /gene="rpmG"
                     /locus_tag="OQQ72_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCS2010680.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            10352..11161
                     /gene="mutM"
                     /locus_tag="OQQ72_000864"
     CDS             10352..11161
                     /gene="mutM"
                     /locus_tag="OQQ72_000864"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HCS2010681.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(11200..11679)
                     /gene="coaD"
                     /locus_tag="OQQ72_000865"
     CDS             complement(11200..11679)
                     /gene="coaD"
                     /locus_tag="OQQ72_000865"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCS2010682.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(11687..12964)
                     /gene="waaA"
                     /locus_tag="OQQ72_000866"
     CDS             complement(11687..12964)
                     /gene="waaA"
                     /locus_tag="OQQ72_000866"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HCS2010683.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            13377..14435
                     /gene="rfaQ"
                     /locus_tag="OQQ72_000867"
     CDS             13377..14435
                     /gene="rfaQ"
                     /locus_tag="OQQ72_000867"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HCS2010684.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLRVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            14432..15556
                     /locus_tag="OQQ72_000868"
     CDS             14432..15556
                     /locus_tag="OQQ72_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS2010685.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            15549..16346
                     /gene="rfaP"
                     /locus_tag="OQQ72_000869"
     CDS             15549..16346
                     /gene="rfaP"
                     /locus_tag="OQQ72_000869"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HCS2010686.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFATPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            16362..17378
                     /gene="waaO"
                     /locus_tag="OQQ72_000870"
                     /gene_synonym="rfaI"
     CDS             16362..17378
                     /gene="waaO"
                     /locus_tag="OQQ72_000870"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HCS2010687.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMDLANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            17395..18390
                     /locus_tag="OQQ72_000871"
     CDS             17395..18390
                     /locus_tag="OQQ72_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HCS2010688.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            18400..19092
                     /gene="rfaY"
                     /locus_tag="OQQ72_000872"
     CDS             18400..19092
                     /gene="rfaY"
                     /locus_tag="OQQ72_000872"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HCS2010689.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVRSAGLTFPND
                     FYFLAERKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            19118..20143
                     /locus_tag="OQQ72_000873"
     CDS             19118..20143
                     /locus_tag="OQQ72_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HCS2010690.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            20228..21211
                     /locus_tag="OQQ72_000874"
     CDS             20228..21211
                     /locus_tag="OQQ72_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS2010691.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIVNKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRYCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            21257..22510
                     /locus_tag="OQQ72_000875"
     CDS             21257..22510
                     /locus_tag="OQQ72_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012311869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HCS2010692.1"
                     /translation="MSFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(22580..23560)
                     /gene="rfaC"
                     /locus_tag="OQQ72_000876"
     CDS             complement(22580..23560)
                     /gene="rfaC"
                     /locus_tag="OQQ72_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HCS2010693.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAAMI"
     gene            complement(23564..24610)
                     /gene="rfaF"
                     /locus_tag="OQQ72_000877"
     CDS             complement(23564..24610)
                     /gene="rfaF"
                     /locus_tag="OQQ72_000877"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCS2010694.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(24620..25552)
                     /gene="rfaD"
                     /locus_tag="OQQ72_000878"
     CDS             complement(24620..25552)
                     /gene="rfaD"
                     /locus_tag="OQQ72_000878"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HCS2010695.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            25766..26962
                     /gene="kbl"
                     /locus_tag="OQQ72_000879"
     CDS             25766..26962
                     /gene="kbl"
                     /locus_tag="OQQ72_000879"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCS2010696.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            26972..27997
                     /gene="tdh"
                     /locus_tag="OQQ72_000880"
     CDS             26972..27997
                     /gene="tdh"
                     /locus_tag="OQQ72_000880"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HCS2010697.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            28236..29270
                     /gene="waaH"
                     /locus_tag="OQQ72_000881"
                     /pseudo
     CDS             28236..29270
                     /gene="waaH"
                     /locus_tag="OQQ72_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
     gene            complement(29257..30216)
                     /locus_tag="OQQ72_000882"
     CDS             complement(29257..30216)
                     /locus_tag="OQQ72_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HCS2010698.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(30220..31503)
                     /gene="envC"
                     /locus_tag="OQQ72_000883"
     CDS             complement(30220..31503)
                     /gene="envC"
                     /locus_tag="OQQ72_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HCS2010699.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(31513..33057)
                     /gene="gpmM"
                     /locus_tag="OQQ72_000884"
                     /gene_synonym="pgmI"
     CDS             complement(31513..33057)
                     /gene="gpmM"
                     /locus_tag="OQQ72_000884"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCS2010700.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            33302..33733
                     /locus_tag="OQQ72_000885"
     CDS             33302..33733
                     /locus_tag="OQQ72_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCS2010701.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            33875..34126
                     /gene="grxC"
                     /locus_tag="OQQ72_000886"
     CDS             33875..34126
                     /gene="grxC"
                     /locus_tag="OQQ72_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HCS2010702.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            34189..34656
                     /gene="secB"
                     /locus_tag="OQQ72_000887"
     CDS             34189..34656
                     /gene="secB"
                     /locus_tag="OQQ72_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015369180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HCS2010703.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            34656..35675
                     /gene="gpsA"
                     /locus_tag="OQQ72_000888"
     CDS             34656..35675
                     /gene="gpsA"
                     /locus_tag="OQQ72_000888"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HCS2010704.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            35755..36576
                     /gene="cysE"
                     /locus_tag="OQQ72_000889"
     CDS             35755..36576
                     /gene="cysE"
                     /locus_tag="OQQ72_000889"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HCS2010705.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(36629..37102)
                     /gene="trmL"
                     /locus_tag="OQQ72_000890"
     CDS             complement(36629..37102)
                     /gene="trmL"
                     /locus_tag="OQQ72_000890"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HCS2010706.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         9226 a         8863 c         9272 g         9873 t
ORIGIN      
        1 tacgcatggt ttacctccag acgtttagcg agccagcgtt gcgacaggcg ggtgagttct
       61 cctttgcgct gctcatattc catgcccata tcaattaacg tgatattggt gctttcgaga
      121 taggcgaggt gttcaagctg tgctgcgttc atgctgtccc gtggttcgcc agtaatgcca
      181 tttgcctgcg cccactgctt cgccgtcatg ccacccagca cgatacgggc gatcatgttg
      241 ctctcgttgc tgtagtggcg ctgctgcgtc gttttgccca tctcggcacg ggccatattc
      301 agcgcatcgc acattggctt aaagttgttt gcggcactga gacgggcttt tagctggcga
      361 cgatagcggg cggcgatttc aggcacgcta cgctgtaatt cttcctcgca ctggatgaaa
      421 taacggcgga tagcgcggcc ctgctcgttg cgttcaacca ttgccacttc tttagccata
      481 tccagcgata gcaggtaatc atgctctatt tgctggcgag tttttgcgct cgcccgtttt
      541 ggcgtgctca aattttcaac acggataaaa tcggttccgg caataaaacc gtactggtca
      601 attcggcctt taatccagtt agtaaagtcg cggcccaccc ccagcgcttt atgcaacgcc
      661 ttagcgctca caatattggc ttcacgcccg ccaatgcgtc cggcaataac gggaacaata
      721 gcggcaaagt cgttgccgtt aattactccc gtgttaacgt tgggttgcgg ggcggccccc
      781 gaactgaatc ggcttttttc gatagtcata ttttcggctc cgttatgcgg cggtgagatt
      841 gtccgggtat agattgagaa tgtcggcaat ttcaggctga gaaagtccct gatagccgcc
      901 agcgtcggcg ttatggttca caagccgaat aacttttaga acgtcaccgc gcccggtaaa
      961 gcgatagcgt aaatgtgacc ctatcccgtc ggggttcttt tcgtctatac gctcaagctg
     1021 aatatcaagc ctgcgctcta actcgctggc gtagttcctt ccagacgaaa ggcggcaata
     1081 acgcagaatg tcattttctg tccatccctc tataccagta cgcagcatat agactctggc
     1141 acgatgcttt ttcggtgtgc gctttggtgc ttgaagggat tttgtaaggg gcgtaacatc
     1201 agatacgcga atatctgaat tagccgcctg taatgggcgg tttttctttt ccatcaggcc
     1261 accttcccgc ggcgttctgc cagccagttg tgaatctcaa ccgcatcaaa cgcagttatt
     1321 ttttctccca gctttaccgg acgtggtagt gaaccgtttc ttactttacg gtcgatggtg
     1381 gatacactaa cgcccagcaa ttcagccagg cggaagcgtc tgatatagcc ttttgtaggg
     1441 atagtgtcga tgttcatgat tcccgtaacc tcttagcgat agttgttgct tcgttacggg
     1501 tatttaatgg cgtgcacgct caaaaaggaa tgatcgtatt ttttactatc gtgatagtaa
     1561 aatttactat cacctttttt tccctgccgt ggtgcgttct tccggtgttc tgtctgcgtc
     1621 ggctatgagt ttcttcaggt aatctatgga tggctcatca tagccgcccc ccaaaagcgc
     1681 ccagtggttt attgtggcgt tcgcccatgc ttcgttggtt tccttcccgt tcttcccttt
     1741 acactcttct gggtagtgcc gcttcacata aatcaacgcc aagaggcaaa tttcgcgctt
     1801 ttgcctgtgg cgctctctgt ttccgtgctc aacgttttta acatcctcat aaagagcttg
     1861 taagtttatg cgagtttcgg ggctgtatat gggctggttt ttgtccatgc attcgccgat
     1921 atattcaacc cacggccttg ttatgtacaa atcctctacg gatatttcgt ggaaggcatg
     1981 ttttgtataa tcgagaaaaa aataataatt cgcacttacg tctagttctc tttttctgtg
     2041 tgcggggctg aatatgcgtg cgggagtgtc aatagaatca agccctgcga tgtcgagtat
     2101 ataggaggcg ttaacatgcc atagcccaag cacatggcaa tctatatgat ttacaacgcc
     2161 tgccttaaag cttttttcgt cctctacttc agtgattatg tcggcaagta ataagcagtc
     2221 ttctttgacg tctgggaata aagagcaatt gcggtaaaga ctcgcgatgc tatgtaatgt
     2281 gccgtcgtag ccgcaaaggt acgcgctcaa atatatagat tctgccgccg ccataatcaa
     2341 aagatcatca atatctattt ctaataattc ggctgctctg ttaagcctga aaaaaggggc
     2401 gggtggtaat tttttcattg tgtcaccttt tacgctgcgc cttattttgt gattgagcca
     2461 ggcggtaagg cttcccgctt ttcgccccgt cgagctaggc tcaatctatt cagttagttc
     2521 gcccttctga gaggcgttac gttgtagtct tttccgcttt ccagtgccac cagcagatca
     2581 gcccactgtg ccagtgctgc tttacgctca tcaaaatact gatggcggtt ataaatcccc
     2641 tctacgccct taatgcgatg attgaggcat cgttccgcca caacaggatc aacacccaac
     2701 gctgctaaat gagtacgtgc ggtgcgtcga aagtcgtgaa tcgtgaaatt aggcacatcc
     2761 ggcatttcgg cgcgaacctt agccagtgct acgggtaaag tgctttcctg aatatgtggg
     2821 atcattctgt tttgcatctt cctggccgga agcacccatg cgctattaca tgaaaaggtg
     2881 tgtagctctc tcaaccattc aacggctggg gaaggtagag gtatatcaat agggtctccg
     2941 tttttgctgc gttcttccgg caaatgccat accgcaccat ctaaatcaaa ctcttcccat
     3001 cgtgcggcgc ataattccat tttgcggacg cataacgcta acagtaattt gaacgtgatt
     3061 tcgttctggc gactgaatcc cttagccgtg cgcatggctt tgaatagctg gattaactca
     3121 tcgcgggtta accagcggtc acgggcagct tctttccctc cggcgtctgc cacctcaaag
     3181 gctgaacagg ggttaatctc tagcgcgtgc cgtttgattc cgtagtcgaa tatgcggcgc
     3241 gtccatctca gcacgtccgt tgctatggtc ggcgctccac ggtcaacaat acctttcagc
     3301 atgtcatcga tatggcgcgg tttcacgtcc tctaccttca tgctgccaat gcaggggttt
     3361 atatctttgt cgatacggcg gcggagtata tcggggtgct tccagcgcgg gaggatctga
     3421 cgctcaaagt attcagcggc aagctctgaa acgcgcatag cgttcttctc tgcttccatc
     3481 ttcgccagtg cttcggtttt gcgcttctgc ttctctcctg caacgtcata gcccagcgca
     3541 acgcgagccg atagctcttt ggctgtctct ctggcctttg atagtgatag ctcgctatac
     3601 gaaccaatta gcatggcgcg ggacttccct gcgagtttat agcggaatct ccatgtgggg
     3661 gttttgtcgg cttcacggta acgtaggtat aaaccgttac cgtctgcccg cccctcgaat
     3721 cgctctccgc tcttaatcca tgcgcggatc tgcatgtctg ttagttttgg cattttgcga
     3781 atatccaaac tttgaatagg gggtgtaccc aaagcaatgt acccaaacct cattgggtac
     3841 acctttgtgt acaccataat catgcgcttt gttgcgtctt tatgatagcc catgataaca
     3901 aaaaagcccg ctgggttgcg ggcttggtgt gatttatgcg ttgtcctaaa tgttgctgat
     3961 agcttactcg atattctgaa tctgctcgcg catctgctca atcaacactt tcagctcaat
     4021 cgcggagttt gtcacttcgg cattgataga cttcgacgca agagtgttcg actcgcggtt
     4081 gaattcctgc atcataaagt ccagacgacg accaacggct tcttttttct tcagaatgtt
     4141 gtaggtctct ttgacatgcg cttccaggcg gtccagttct tcggcaacgt caattcgttg
     4201 tgccagcaga accagctcct gctccagacg gttgttttcc aactgaacct gagcatcttc
     4261 cagcttcgcg accagacgct cacgctgcca ttgcaggatt tccggcatat gggcgcggac
     4321 tttgaccact tcggcggtga cgccttccag acgctgctcg atcaatgctt tcagtgcctg
     4381 accttcggtt tcgcgcgcga caataaagtc gtccagcgta ccatccagcg ccgcgagaat
     4441 ttcagcggca atggcgtcaa gatcctgctc ctgggctgcc atcacgcccg gccagcgtag
     4501 aatatcaacc gggttgattt ccccttcgtc actctgcatt tttacccagt tcgcggcagt
     4561 taccagctgt ttagccagtt tttcgttgag gatcagctca ccttgcgcgc taatatctgg
     4621 ctcatagcgc agggtacatt ccactttacc gcgcgtcagg cgagaacgaa tacgctcgcg
     4681 aacgacaggt tcaaggctac ggaactgctc cggcagacga aagtaagttt ccagataacg
     4741 ctggtttacc gagcgcattt cccaggttgc gctcccccat tcacccttga tttcacgccg
     4801 ggcgtaggcg gtcatactgc ggatcataga cgttcctgtt tataaaagga gaggtggaag
     4861 gattatagcc atcgatgcct tgtcaggata ggaataaccg ccggaagtcc gtataatgcg
     4921 cagccacatt tgtttcaagc cggagatttc aatatgcgtc cagcaggccg tagcaataat
     4981 caggtgcgtc ccgttaccct gactcgtaac tatacaaaac atgcagaagg ctcggtgctg
     5041 gtcgaatttg gcgataccaa agtgttgtgt accgcctcta ttgaagaagg cgtgccgcgc
     5101 ttcctgaaag gtcagggcca gggctggatc accgcagagt acggcatgct gccacgttct
     5161 acccacaccc gtaacgctcg tgaagcggcg aaaggtaagc agggtggacg cacaatggaa
     5221 atccagcgtc tgatcgcccg tgctcttcgc gcggcagtag atttgaaagc gctgggtgag
     5281 ttcaccatta cgctggactg cgacgtgctt caggctgatg gtggcacgcg taccgcgtcg
     5341 attacgggtg cctgcgtggc gctggcagat gcgctacaga agctggtgga aaacggcaag
     5401 ctgaaaacca acccgatgaa agggatggta gccgcagttt ctgtcggaat tgtgaacggc
     5461 gaagcggttt gcgatctgga atacgttgaa gactctgccg cagagaccga catgaacgta
     5521 gtgatgaccg aagacgggcg catcattgaa gtgcagggga cggcagaagg cgagccgttc
     5581 acccatgaag agctactcac cttgttggct ctggcccgag ggggaatcga atccattgta
     5641 gcgacgcaga aggcggcgct ggcaaactga tttttaaggc gactgatgag tcgccttttt
     5701 tttgtctgta gaaaagtaag atgaggagcg aaggcatgaa accatatcag cgccagttta
     5761 ttgaatttgc gcttggcaag caggtgttaa agtttggcga gtttacgttg aagtccgggc
     5821 gcaaaagccc ctatttcttc aacgccgggc tgtttaatac cgggcgcgat ctggcactgt
     5881 taggccgttt ttacgctgaa gcgttggtgg attccggcct tgagttcgat ctgctgtttg
     5941 gccctgctta caaagggatc ccgattgcca ccactaccgc cgtggcgctg gcggagcatc
     6001 atgaccttga cctgccgtac tgctttaacc gcaaagaggc aaaagaccac ggtgaaggcg
     6061 gcaatctggt tggtagcgcg ttacaaggac gcgtaatgct ggtagatgat gtgatcaccg
     6121 ccggaacggc gattcgcgaa tcgatggaga ttattcaggc taatggcgcg acgcttgctg
     6181 gcgtgttgat ttcgcttgat cgtcaggaac gggggcgcgg cgagatttcg gcgattcagg
     6241 aagttgagcg tgattacaac tgcaaagtga tctctatcat caccctgaaa gacctgattg
     6301 cttacctgga agagaagccg gaaatggcgg aacatctggc ggcggttaag gcctatcgcg
     6361 aagagtttgg cgtttaaaga aactcgccgg atgaaaagtc atccggcgtc atattactgc
     6421 aactgtgccg caattagcgg ccagcgggcg tcaaaatcat ccgtcgggcg gtatttaaat
     6481 tcgctgcgga caaaacgtga cagcatacct tcacagaagg ccaggatctg gcttgccagc
     6541 agggtttcat cggtggtgta accttcaccc tcacgcattc tcttttcacg caatacctga
     6601 cgcagctgcg cttcaatacg ctcgaacagc tggttgatgc gcccttgcag gcgatcctgt
     6661 tcaaacatta gcgcatgacc agtgaggatg cgggtcaggc caggattacg ctcaccaaaa
     6721 ccgagaagca gcaacacaat cagacgcagg cgcgctgtgg tgtctttctc atctttcaga
     6781 atcaggttga tgcgagtaat caggctatct tcgataaact caatcaggct atcgaacatg
     6841 cgggtcttac tggggaagtg gcgatacagt gccgcttcgg aaacgccgac agaggcggcc
     6901 agttttgccg tcgtgatacg ttggcttcca tcgctggatt ccagcatcag cgccagagac
     6961 tgaagtattt cctcgcgacg gttccttttc gcagtttgtt tttctgccat gttacaaaat
     7021 acccctgaaa ataagcacct gccaggcggc acccacgcta tgaccgcaaa cgaaatgttt
     7081 gcggctatgt tatgacgtta ttcggatgcg tatgtgttac tgacgaccag agtgaccaaa
     7141 gccgccttca ccgcggtcgg tggcgtcgaa atcttccacc agattaaatt cagcctgtac
     7201 taccggaaca aaaatcatct gggcgatgcg ttcgccaggt tgaatggtga agctgtcctg
     7261 accacggttc cacacggaaa tcatcaactg gccctgatag tcggaatcga tcaatcctac
     7321 caggttacca agcacgatac cgtgcttatg tcccaatccg gagcgcggca gcatcattgc
     7381 cgccagtgaa ggatcggcaa tatgaatcgc cagcccggtc ggaaccagcg tagtgtcacc
     7441 cggagccagt tctacggcgt cgtcgagaca ggcacgcagg tcaagtccgg cagagccaga
     7501 ggtggcataa gtcgggagcg gaaattcctt cccaacgcgc gggtccagaa tcttaacgtc
     7561 gatttttttc atcataacgg gtcacgatct cgtcgagtaa tagttggcca aggagctctt
     7621 tgcgctcaag cggtaagact ttatctccgt cctgccagaa aaggtgtaat gcgttgtttt
     7681 cgctgttaaa tccttgagtt ggctgggaaa catcgttcgc gcagatcaga tcaaggtttt
     7741 tacggatacg tttttgccgg gcgtattctt ccacattatt tgtttcggcg gcaaatccaa
     7801 cgacgtaggg tcgatggtct tttagtgcgg caacgcctgc gacgatatcg gggtttttaa
     7861 ccatttttat tgttaattca tcaccctgcg tggcctgctt tttgattttt tctggggcca
     7921 cggtagctgc gcgataatcc gccacggcgg cgcagccgat aaaaatattt tgctgctgta
     7981 cagaagcatt cacggcggct tccatttcca gcgcggtcat cacatcaaca cgtttaacaa
     8041 acggtggcgt cggtagtgaa accggacctg ataccagcgt gacgttcgcg ccacgacggg
     8101 cagcggcggc ggcgatagca aaacccatct tgccggagct gtgattagag atataacgca
     8161 cgggatcgag cggttcacgc gtcggaccgg cggtaatcat aatgttcaga tgtttcaggt
     8221 cgttgacggg cgaaaaatgc gccaccgcca tatccacaat ggttaacgga tcgagcattc
     8281 gcccaggacc gatatcacca caagcctgac tgccactgtc tggcccccag atgagcaaac
     8341 cacgggaagc aagcccctct aaattatgct gcgtggcagc ggcacggtac atctgctggt
     8401 tcatggcggg gagcacggct acaggcgcag gtgtagccag acaaatcgtc gataccaggt
     8461 cattcgccat tccggcagca acacgggcaa tcaaatctgc cgtggcaggg gcgagaatca
     8521 ctaaatcagc ccatttaccc agctcaatat ggcccatagc ggcttcggct gccgggtcca
     8581 gcaaactgtc ggaaacggga taaccagaaa ccgcctgcaa gctaagtggg gtgataaagg
     8641 cttttgccgc ttcggtcatg gctacgcgga cgtcggcccc gcgatcgcgc aaacgacgca
     8701 ccagttcagg ggttttatag gcagcaatac cgccgctaac gccgagaacg atttttttac
     8761 cggccaggct catgatgatt tttcctgttg ggtgacacca gaagttggcg attttatcac
     8821 aatacttttg ttgtcgtgcc ttcacctgag aatcactttg cgaggcgctt tccaggattg
     8881 aaaactggcc gtcgatttaa cggaacggct atgacaggat gcgagcacca caaaggaggt
     8941 gaaggtgaaa aacaattcac agctgttgat gccgcgcgaa aaaatgctga agtttggtat
     9001 tagcgcctta acggatgtcg agctgctggc gctatttctg cgtaccggaa cgcgcggtaa
     9061 agatgtatta accctggcaa aagagatgct ggagaatttc ggctctcttt atggcttgtt
     9121 aacctctgaa tatgaacaat ttagtggcgt tcatggaatt ggcgtggcga aatttgccca
     9181 gttaaagggg attgctgaac tggcgcggcg ttactacaac gtgcggatgc gtgaagaaag
     9241 ccctttactc agcccggaga tgacgcggga atttttacaa agccagctta cgggtgagga
     9301 gcgggagatc tttatggtga tctttctcga ctcacaacac cgggttataa cgcatagccg
     9361 tcttttttcc ggcacgctaa accatgttga agtccatcct cgggaaatta tccgcgaagc
     9421 gataaaaata aacgcctcgg cgctgatcct tgcacataat cacccttcgg gttgtgctga
     9481 acccagtaaa gcggataaac tcattactga acggataata aagagttgtc agttcatgga
     9541 tttacgcgtg ctcgaccata tcgtgattgg gcgtggagag tatgtttctt ttgccgaacg
     9601 cggctggatt taacccgcta tgcgcgatcc ttcgggatct ttgtctgttc gggacttgag
     9661 cacatcgctg agtcagcgta tactacgcca cctttgagaa tctcgggttt ggcatttggg
     9721 cctggcaatc gagagttcac atagaactgc gatgactggg ctgtaaagcc tgacgaggcg
     9781 ccaatacccc atacgaagct cgagctaatt tgatttttgg agaatagaca tgtcccgagt
     9841 ctgccaagtt actggcaagc gtccggtgac cggtaacaac cgttcccacg cactgaacgc
     9901 gactaaacgc cgtttcctgc cgaacctgca ctctcaccgt ttctgggttg agagcgagaa
     9961 gcgttttgtc accctgcgcg tatctgctaa aggtatgcgt gtaatcgata aaaaaggcat
    10021 cgatacagtt ctggctgaac tgcgtgcccg tagcgaaaag tactaagtac ttagaggaaa
    10081 taaatcatgg ctaaaggtat tcgtgagaaa atcaagctgg tttcttctgc tggtactggt
    10141 cacttctata ccactacgaa gaacaaacgt actaagccgg aaaaactgga actgaaaaaa
    10201 ttcgatccag ttgttcgcca gcacgtgatc tacaaagaag cgaaaatcaa ataattctcg
    10261 ctttgatgta acaaaaaacc tcgctccggc ggggtttttt gttatctgct tgcccccata
    10321 ttgactgcat ctgttcattc ctggagatgc tatgcctgaa ttacccgaag ttgaaaccag
    10381 ccgccgcggc atagaaccgc atctcgttgg tgcaaccatt cttcatgcag tggtgcgcaa
    10441 cggacgcttg cgctggccgg tttcagaaga gatctaccgt ttaagcgacc aaccagtgct
    10501 tagcgtgcag cggcgggcta aatatctgct gctggagctg cctgagggct ggattatcat
    10561 tcatttaggg atgtctggca gcctgcgcat ccttccagaa gaacttcccc ctgaaaagca
    10621 tgaccatgtg gatttggtga tgagcaacgg caaagtgctg cgctacaccg atccgcgccg
    10681 ctttggtgcc tggctgtgga ccaaagagct ggaagggcat aatgtgctgg cccatcttgg
    10741 accggagccg cttagcgacg atttcaatgg tgagtatctg catcagaagt gcgcgaagaa
    10801 aaaaacggcg attaaaccgt ggctgatgga taacaagctg gtggtagggg tagggaatat
    10861 ctatgccagc gaatcactgt ttgcggcggg gatccatccg gatcggctgg cgtcatcact
    10921 gtcgctggca gagtgtgaat tgttagctcg ggtgattaaa gcggtgttgc tgcgttcgat
    10981 tgagcagggt ggtacaacgc tgaaagattt tctgcaaagt gatggtaaac cgggctattt
    11041 cgctcaggaa ttgcaggttt acgggcgaaa aggtgagccg tgtcgggtgt gcggtacgcc
    11101 gattgtggcg actaaacatg cgcagcgggc aacgttttat tgtcggcagt gccagaagta
    11161 attcatgcgc gccggatcgc ataccatccg gcataaacgc tacgctaact tcgccatcag
    11221 cgcctgatgg acattctccg gcaggaaatg ggtgacatcg ccctgatggc gcgccacctc
    11281 tttcaccaac gatgaagaga taaacgacca ctctttcgac ggcatcagaa acacactttc
    11341 cagttccggc attaagtggc gattcatatg cgccagctgc atttcatatt caaaatccgc
    11401 caccgcacgc aggccacgaa tcagcaccgt agcgtgttga ttacgggcga agttcgccat
    11461 caaatcacta aacccaacta cttccacgtt ccccagatgc gcggttgcct gctgtgccag
    11521 cgccacacgc tcttccaggg taaacatcgg ttttttactg gggctggcgg caatcgccag
    11581 aataacgtga tcgaacattt gcgtggcgcg cgtcacgata tcgatatgac cattggtaat
    11641 gggatcgaaa gtacccggat aaatcgcccg tttttgcata acaacctcaa tgcgttttcg
    11701 gtggcaggta aggttccagc agttgaagca ggcgctgtag cgcgccctgg ttttgataca
    11761 gtacttcaac ggcatgacgg ccatagaaac tacggtaatc ggcgtcggtg agtaaagagg
    11821 aaacctcttt tgcaagcgta gtggcatcgg taacggtaat cagcccgctt gcctgctcca
    11881 gccgcgcgca aatgtcttta aaattaaaag tatgcggccc catcaatacc ggaatagcgt
    11941 gtgcggcagc ttccagcgga ttatgcccac cacgttcaac cagtgaaccg ccaacaaagg
    12001 cgagatcggc aatgccgtac agtaacatca actcgcccat cgtatcgcca accacaacct
    12061 gcgtgctggt ggaggggact tcccctgaag agcgtgtgat atagcttagt ccagcctggc
    12121 ggacaaggtt aatcgcatcc gggaagcgtt ctggatgacg gggtaccagg atgagcaata
    12181 aattcgggaa ttgctgtaac aatacctgat gtgcggcgat caccacactc tcttcacctt
    12241 cgtgagtgct ggtggcaatc cataccgggc ggtgtggtgc ccactggcgg cgcagcgtca
    12301 cggctttagc agccaactgc ggcgttacag aaatatcgaa tttcaggcta ccggtaacgg
    12361 ttacctggtt attttttgcg cccagcgcca caaaacgtgc accatcttct tcattttggg
    12421 cggcaatcag cgtaatacga cgcagcaagc gacggacgaa tttacccagt ttggcataac
    12481 ctgcggccga gcgggcagag agtcgcgcgt tcgcgatcac cagcggaatt ttacgtttat
    12541 gtagcgccgc aatcaggtta ggccatagtt cggtttccat aatcaacacc agtttagggt
    12601 cgactttatt caggaaacga ttaagtgcat cgggcaggtc atacggcaga taaacgtgct
    12661 gaacatcctt cccgaaagcc gattgtacgc gctccgaacc ggttggcgtc atggttgtaa
    12721 cggtaatcgg taaatcagga taacgatgac gcagcgcgcg caccaacggg atcgccgcca
    12781 gagtttcacc gacggagacg gagtgcagca taatgccgcc tggttttagc ggatggcggt
    12841 aaaaaccgta acgttcaccc cagcgttttc gataggccgg agccttacgt ccgcgcaccc
    12901 agagccgtat ccagatcagc ggctgaataa ggtagagaag ggcggtgtaa agcaattcga
    12961 gcatagtaaa tagctgactt atggatgtgc tggggattct atgtatttag ctgtggcttt
    13021 accattactt ttcccgtttt tgacttaaat agcaatttac ccgccaattc ttgctgaaca
    13081 tctatacttt ttttgtattt ttatgcgatt cattgatttc tgctgtacgt gcaggaagga
    13141 atcgcagagc aacagtgaaa gaatatggtt gctaatgatt ttatttgatt gatttcttta
    13201 ttgaaaatca acaatgtgct taaaaatcat tcgggtcgga ttgccgcgaa agaagtgata
    13261 cactagcgcg tcaatatcag tgcggtatca gtattcaggt agctgttgag cctggggcgg
    13321 tagcgtgctt tttctgcttc accttaatcg gataatctca acaaaaagag ttacttgtgg
    13381 ataagctatt tcgaagaatt ttgctcatta agatgcgttt tcatggggat atgttattaa
    13441 ctactcccgt cattagttcg ctgaaaaaaa attaccctga cgcaaaaatc gatgtgctgc
    13501 tttatcagga caccatcccg atcctgtctg aaaatccaga gattaacgcg ctctacggca
    13561 taaaaaataa aaaagcaaaa gcctcagaaa aaattgccaa cttttttcat ctcatcaagg
    13621 tattacgtgc caataagtat gaccttatcg tcaatctcac cgatcaatgg atggttgcta
    13681 tactggttcg cttattaaat gcccgtgtga aaatttccca ggattatcat catcggcagt
    13741 ctgctttttg gcgtaaaagt ttcacccatt tggtgccgtt gcagggtgga aatgtggtgg
    13801 aaagtaactt atccgtgctg accccattgc gagttgattc gttggtgaag cagacaacca
    13861 tgagttaccc gcctgcaagc tggaaacgta tgcgtcgcga acttgatcat gctggtgttg
    13921 gacaaaatta tgtggttatc caacctacgg cgcggcaaat cttcaaatgc tgggacaacg
    13981 ccaagttttc cgctgtgatt gatgccttac atgctcgtgg ttatgaagtt gttctgacgt
    14041 ccggcccaga taaagacgat ctggcctgcg tcaatgaaat tgcgcaggga tgccagacgc
    14101 caccagtaac ggcgctggct ggaaaggtga ccttcccgga acttggtgcg ttaatcgatc
    14161 atgcgcagct gtttattggc gttgattccg caccggcgca tattgccgct gcagttaata
    14221 cgccgctgat atcgctgttt ggtgcgacag accatatttt ctggcgtccc tggtcaaata
    14281 acatgattca attctgggcg ggagattacc gggaaatgcc aacgcgcgat cagcgtgacc
    14341 gaaatgagat gtatctttcg gttattccgg cggcagatgt cattgctgct gtcgataaat
    14401 tactgccctc ctccacgaca ggtacgtcgt tatgatcgtt gctttttgtt tatataaata
    14461 ttttcccttt ggcggtttgc agcgcgattt tatgcgtatt gctcagacag tcgccgcccg
    14521 aggtcatcat gttcgggttt atacccagtc gtgggaaggc gaataccctg atgtatttga
    14581 actgatcaaa gtgccggtta aatcgcatac caatcacggg cgcaatgcgg agtattttgc
    14641 ctgggtgcaa aaacatttac gcgaacatcc cgtcgataaa gtcgttggat tcaacaaaat
    14701 gccggggctg gacgtttatt atgccgctga tgtttgttat gccgagaaag tcgcgcagga
    14761 aaaaggcttt ttctatcacc tgacgtcacg ttatcgccat tatgccgcct ttgagcgggc
    14821 aaccttcgaa cagggcaagc cgacacagct gctgatgctg acagataagc aaatcgccga
    14881 tttccagaaa cattatcaga ctgaagcgga gcgttttcat attctgccac cggggattta
    14941 tcctgatcgt aaatatagcc agcagccagc taatagccgt gaaatcttcc gtaagaagaa
    15001 tggaataacc gaacaacaat atttattgtt gcaggtcggt tcagacttca cgcgtaaagg
    15061 tgtcgatcgt tccattgaag cacttgcttc gttaccggat tcgctgcgcc acaacacatt
    15121 gctatatgtt gttggacagg ataaaccgcg aaaatttgag gcgctggcag aaaaacgcgg
    15181 cgtgcgcagt aatgttcact tcttctcggg gcgcaacgat gtctcggaat taatggcggc
    15241 ggcggattta ttactgcatc ctgcctacca ggaagcagcg ggaattgtgc tactggaagc
    15301 gattactgca ggattaccgg tactaacaac agccgtttgt ggctatgcgc attatattgt
    15361 cgacgccaat tgcggcgagg ctattgctga gccattccgc caggaaacat tgaatgagat
    15421 tttacgcaaa gcgttaacgc aatcttcatt gcgccaggcc tgggcggaaa atgcgcgaca
    15481 ttatgctgat acacaagatt tatacagtct gccagagaaa gcggcggata tcataacggg
    15541 tggtctggat ggttgaactt aaagagccgt ttgccacgtt atggcgcggt aaagatcctt
    15601 ttgaggaagt taaaaccttg cagggtgagg tttttcgtga actggaaact cgccgcactc
    15661 tgcgatttga aatggcgggc aaaagctatt ttctcaaatg gcatcgcggc acgaccctga
    15721 aagagataat caaaaattta ctctcattgc ggatgccagt attaggcgca gaccgcgaat
    15781 ggagtgcgat tcatcgactg cgggatgtcg gcgttgatac tatgtatggg gtggcatttg
    15841 gcgaaaaagg tattaatccg ctgagcagaa cctcgtttat tattaccgaa gatctgaccc
    15901 caaccatcag tctggaagat tactgtgctg actgggcgac caacccacca gatgttcgcg
    15961 taaagcgtat gcttattaag cgtgtcgcga cgatggtgcg cgatatgcat gctgcgggca
    16021 ttaaccaccg tgactgttat atctgtcatt tcctgctgca cttgcctttt tccggtaagg
    16081 aagaggagtt aaaaatttcg gtaattgacc tacaccgggc gcagcttcgc acgcgcgttc
    16141 cacgtcgttg gcgcgataaa gatcttatag ggctttattt ttcttcaatg aatattggcc
    16201 tgactcagcg ggatatctgg cggtttatga aagtgtattt tgccaccccg cttaaagaca
    16261 ttctcaagca ggaacaagga ctgctgtcgc aagcagaagc aaaagccaca aaaatcaggg
    16321 aaagaacgat tcgaaaatcg ttgtaatttc cggagagaaa tatgagtgcc cactatttta
    16381 atccacaaga gatgatcaat aagacaatca tcttcgatga aaggccagcg gcgtcagtgg
    16441 catcatcatt ccatgttgct tatggcattg ataaaaactt tctttttggt tgtggtgttt
    16501 caatcacgtc agttttgtta cataacaacg acgtgagttt tgttttccac gtttttattg
    16561 atgatatccc tgaagccgat atccagcgtt tagcccaatt ggcgaaaagc tatcgtacct
    16621 gtatccagat ccatctagta aattgtgaac ggcttaaggc attaccgacg accaaaaatt
    16681 ggtctattgc catgtatttc cgttttgtaa ttgcagatta ctttattgat caacaagata
    16741 agatccttta cctggatgct gatatcgcct gtcagggaaa cttaaagccg ctgataacaa
    16801 tggatcttgc caataacgtt gctgctgttg ttactgaacg cgatgctaac tggtggtcgt
    16861 tacggggtca aagtctgcag tgtaatgaac ttgaaaaggg ctactttaat tcaggtgtcc
    16921 tgttaattaa tacactagcg tgggcgcagg agtccgtttc tgctaaagcg atgtcgatgc
    16981 ttgctgataa agccatcgtt tcccgtttca cctatatgga tcaagatatc cttaatctta
    17041 tcctgttagg gaaagttaaa ttcattgatg ctaaatacaa tacgcaattt agtttaaatt
    17101 atgaattaaa aaaatcattt gtttgtccaa ttaatgatga aaccgtatta attcattatg
    17161 tcggcccgac aaaaccctgg cattactggg ccggttatcc aagtgcgcaa ccttttatca
    17221 aagccaaaga agcatcgccc tggaaaaatg aaccgttaat gcggccagtt aactcaaact
    17281 atgctcgtta ttgcgccaag cataatttta aacaaaataa accaattaac gggataatga
    17341 attatattta ttatttttat ttaaagataa taaaatgaaa ttgagaaaag ttaaatgaat
    17401 gaatttataa aagaacggtt ttcgtattta gcagataata aaaaagaaaa cgccccagag
    17461 ctaaatgttt cctacggtat cgataagaat tttttgtatg gtgctggcgt ttcaatttct
    17521 tccgttttga ttaataattc agatattaat tttgtctttc atgttttcac tgattatgtg
    17581 gatgatgatt atttaaagtc atttaatgaa acagcaaaac aatttaatac ctcaattatt
    17641 gtatatttaa ttgaccccaa atactttgct gatctgccga cgtcacagtt ttggtcatac
    17701 gcgacatact tcagggtatt gtcttttgaa tatctgagtg aaagtatttc cacactgctg
    17761 tatctggatg ccgatgttgt ttgtaaagga agcctgaaac ctctcacaga aattatattt
    17821 aaagatgagt ttgctgcggt cattcctgac aatgatagta ctcaggcggc atgtgcaaaa
    17881 cgcctcaaca ttcccgaaat gaatggacgt tatttcaatg caggcgttat ctatgtcaat
    17941 cttaaaaaat ggcatgaagc aaatttgaca ccgtatttac tcaaactttt acgaggggaa
    18001 actaaatatg gctctcttaa atatttagat caggatgcgt tgaatatcgc atttaatatg
    18061 aataatatct accttgcgaa ggattttgat actatttata ccctgaaaaa cgaactttat
    18121 gatcgtagtc atcgaaagta tcagcaaacc attaccgata aaacagtgtt gattcactat
    18181 acagggataa ctaaaccatg gcatagctgg gctggatatc cgtctgcatc atactttaat
    18241 atcgcgcgtg aacaatctcc ctggaagaaa tatcctctta aagaggcgcg gactgttgca
    18301 gaaatgcaga aacaatataa gcatctgttt gcccatggtg agtatataaa aggcataact
    18361 tcattaatta agtacaagct taagaaataa attactctta tgattacaag tatacgttat
    18421 cgcggcttct cattttatta caaagataat gataataaat ataaagaaat ctttgatgaa
    18481 atactggcct ataattttaa aacagtaaaa gtattatgta atattgatga taccaaagta
    18541 tcgttgattg atacgaaata tggtcgctat gtttttaaag tctttgctcc gaaaacgaaa
    18601 aggaatgaac gttttttaaa atcttttgta aaaggtgact actatcagaa tttgatcgtt
    18661 gaaaccgatc gtgtcagaag tgcaggtctt acttttccta atgattttta ttttctggct
    18721 gagcgtaaaa ttttcaacta tgccagtgtt tttatcatgc ttatcgagta tgtcgagggc
    18781 gtagagctca atgatatgcc gattattcca gaaaatgtta aagcagaaat taaggcttcg
    18841 atggaaaaat tgcatgcctt aaatatgcta tcgggcgacc cacaccgggg taactttatc
    18901 gttagtaaag atggtgtcag gataattgac ctatccggta aaagctgtac ggcagagcgt
    18961 aaagctcgtg atcgtctggc catggaacgt cacctgggta ttgccaacga aataaaagat
    19021 tatggctact attcagtaat ctacagaacc aaactacgca aatttattaa aaaattaaaa
    19081 ggcaaagcgt aaaccacaca gtcaaaacgg aaccaacatg gatttattag cagagagtat
    19141 tactgaagtc gctgtctctg gggaaattgc taacaccgat cgtgtgttaa atatcgctta
    19201 cggtattgac cgtaactttt tatttggtgc ggcagtatct atgcaatcag ttgttatgca
    19261 taacccggac cttgcggtta agtttcatct ctttaccgac tacattgatg aagattatct
    19321 acaacgtgtt aatgctttta ccagcaaaaa tgctaacgtt gaagtaataa tttataaagt
    19381 ctccaatgcc tttattgata tcttccccag cctgaaacag tggtcttatg caacattctt
    19441 ccgtttagtt gcgttccagt atttgagtga aactattgaa aatctgttat atatcgatgc
    19501 tgatgtcatc tgtaaaggct cattagctgg attgcttgat attaattttg atgaggataa
    19561 gttcgcagct gttattaaag atgtgccttt tatgcaggaa aaaccagcga agcgtctggc
    19621 tatagaggga cttccaggga attatttcaa cgccggtgta gtatatctgc agcttgaagc
    19681 atgggcgaaa aatgatttta tgaataaagc cattgctatg ctggcaagtg acccgcagca
    19741 cacgaagtat aaatgccttg atcaggatat tttaaatatt ctgttctttg gtcattgtaa
    19801 ttttattagc ggcgattatg attgctttta tggcattgac tatgagttaa aaaataaaag
    19861 cgatgaagat tataaaaaga ccattaccga tgatactaag ctgattcatt atgttggcgt
    19921 aacgaagccc tggaacgact ggacgaatta tccctgccag aagtatttta atgaggctta
    19981 tcaggcttct tgctggaatg atgtggcgtt tattccagcc acgaatgaaa agcagtatca
    20041 agtgaaatat caacatgcaa agaaaaatgg tgatacgttt aacgctttta tttacttcat
    20101 taaatttaaa ttaaataagt ataaaagaaa actatttgga taataataaa aatcatggat
    20161 gtctgagtta caataataat taaggatgag tactatcata ttttattagt tcaggcaaga
    20221 gaacacgatg agcaatgatt accctttagt atctataata ataccgacgt ataattcatc
    20281 tgattacatt actgaaactc taacgaaatt agaaaaacaa acttacccaa attttgaaat
    20341 tgttattgtt aatgatggtt ctaaagataa cacatcaaac gttttgagag agtatgggtt
    20401 aacccactct cgattaatta ttgtcaataa agaaaatggc ggtgtttcgt ctgccaggaa
    20461 tacaggtatc cgcaaggcgc aaggacagtt tatatgtttt atggatgatg atgatgagat
    20521 agatcctaac tatctgctga agatgtatac cagacaacat gagacgggag gggatgcgat
    20581 ttattgtggg ctttatggcc attatataaa agatggtgtt acttactcac ctataaatac
    20641 agagtttaat gaaggatctt tacttttcga ctttttttat aaaaaggtta gattccatat
    20701 agggtgcttg tttataagaa aacaacttct ggaagagaat aatctttttt ttgatgaaga
    20761 tttacgacta ggagaagatc ttgattttat ctatcgactg ctaattacat gcgatatgta
    20821 tgcggttcca tattatatgt ataagcataa ctatagagaa aattccttaa tgaactcatg
    20881 tagaaccatc actcattatc gacatgagtc atttgcgcac gaaagaatct actcttctgt
    20941 gatgcagtta tacaaaggta accggaaaga agaaattcat acattattga gtcaaaatag
    21001 agcttatcat aaaactcgtt atttatggaa tgttctactt aatggtgatt ttaaactatt
    21061 gaatcaatta gttgaaagca atgaaaaaga attaagatat tgtaatcttc ctggcaagag
    21121 agataagaga cgagcaaaaa tattagcatc aaaaaattat attctctgga ggatggtaag
    21181 actggtaaat agaaaaaaga ataaacgtta gatcttgcat taaataaccc atcctcgtag
    21241 cataggttga aattatatgt cgttttgttg gaatgaaatt aattctggta taaagtcttt
    21301 aattcttata ttatgtattt tttctttaat gactttgtct ttatgggatg atgttgcaac
    21361 aaagtttctt catgcagctg gaattatatc tgcattgtat tttcttgcga caccaaaaaa
    21421 aacaataact aataatccta ctttgttaat tttcatctca ttatgtcttt tgggtatcgt
    21481 aaatatcatc tggtattcac attataaagt ttcaggctct gtttatacca atgcatatcg
    21541 tggcccaatg gaaactggaa aaattgcctt gtgtagcgct tttattttct tagttctttt
    21601 tgctaaaaat gagatgagaa caaaaataaa atttgggaaa ctaattctgt tcgcatccct
    21661 ggcaacgcag ttactttttt ttgcgcatgc catgtggcaa catttctatt taaacgtcga
    21721 ccgtgttgca ttatcagctt cccacgctac aacagcaggc tacatcatcc tttttccttc
    21781 tttactggca tcaattctca ttttaaaatc cgactttaga cataaaacaa cattatatac
    21841 aattaacttc atgcttagct tatgtgctgt catagtaact gagacgcgtg cagccatatt
    21901 agtgtttcca ttctttgcgt taatattaat cgtaatggat agttatatta ataagcgaat
    21961 taattataag ttatattgtt ttattgcgat tgcattatta gcaggtgtat tttcttttaa
    22021 agatacattg cttatgagaa tgaatgactt aaataacgat ttagttaatt attcgcatga
    22081 taacaccaga acttcagtcg gtgcccgtct ggcaatgtat gaagttggct taaaaacata
    22141 ttctccaata ggacaatcac tggaaaaacg tgcagaaaaa atacatgagc tagaagaaaa
    22201 agagcctaga ttgagtggcg ctttaccttt tgtagattct catttgcata acgatctcat
    22261 agatacgtta tcaacgcgtg gtattcctgg agttgtatta acaattttag cattttcagc
    22321 aatactcata tatgccttaa gaactgctaa agaaccttat attttaatct tgcttttttc
    22381 actactggta gtaggcctaa gtgatgtaat actcttttct aaaccggttc cgactgctgt
    22441 gtttgtcacc ataatattgc tttgtgctta ttttaaagca caatcagacc aatatttatt
    22501 agataagtaa tgaatatatg aaataaaatc agcaaggagg ctgattttat ttcaaaatta
    22561 tctattaagg ggttgtaatt taaatcatag cagcgttttc agcgttttct tcaatgaatc
    22621 gcttaacagc atttgctgtc aattgagaca actcattccc cggagcccta caaaccattt
    22681 gattcttccc atacccacca attaatcccg gatcggttgg tccataaacc gtgatattgg
    22741 gtctatccag tgccgccgtt aaatggctta accccgtatc caccgacact acaaatttag
    22801 ccccggccag cacgcgggca acgccttcca gactcatctt cggcaatact tcaacataat
    22861 caaatccttc cgccagtcgt ttcgcccgtt cttcctcatg cggcgcgccc cacggaagtt
    22921 taatccgtat tcctgaatca gccagtaaac caatcaattc tcgccagtgt tcttccggcc
    22981 agtgtttatc atcacgggtc gtcgcatgaa gaaatacggc atattcgcca gcatctgtag
    23041 gcaggttcgt cagaaaatgc tgtgcgatag cataatcgcc ctgggtttgc ggtttgctat
    23101 agcccaaact tttggcaaac agttcgcggg tgcgttctac ggcgtgctgc tgttttgcaa
    23161 tatgatgctt acaattgtaa aacaggctgg ctaaaggttc gcgagcggtt tgccagtcca
    23221 atccatgctt tacgccatgc gccagacgtg tcaccagtgc cgcgcttttt accagcccct
    23281 gagcgtcgat aactgcgtca tagttctctg cttgtagcgc ttcacgaaac gctttgcgtt
    23341 cagcttttat gggggccgag aaccaggctt tacgccagcg acgtattgcc acaggaataa
    23401 ctcgctcaac ggcagcgtgc caggaaggaa tctgtgcgaa cccttcttcc accacccagt
    23461 caaacttaat ccctgggatt gcctgctggg catcagtgag tgcgggcaac gtatggagaa
    23521 catcgcccat cgacgatgtt ttaacgatca aaacccgcat ccgtcaggct tcctcttgta
    23581 acaatagcgt gttgagttct tccagtacgc gctggggagt aatgtcgatc aagctctggt
    23641 gataaccctc cgcagcgtca cctttacgca ctttgtgata gccggtaatc agacggatca
    23701 cgcgcgcttt atgggatagc ggcggtgtga agtccgggct acttggacca tacagggcaa
    23761 ccagcggacg attgagcgcc gccgcaacgt gcatcaggcc agaatcgtta gtgacaatgg
    23821 ctttacaggc tgcaatcagg ataaccgctt gatcaagctg tgtttccccc gccaggttcc
    23881 gacaccatgc ctgctgctcg gtattcaaag cggcaagaat ctcattgccc gcttcatgat
    23941 ctttcgcaga gccaaacaga accacctgat aaccttcatc aatcagctgc tttgccagtt
    24001 ccgcatagtg gtagtgtggc cagcgttttg ccggaccaaa ctccgcaccc gggcaaaagc
    24061 caatcatcgg acgttctgat gaaagcgaaa attgattaca ggtatatgat ttttcacctt
    24121 cgctcacctg caactgcggc cataacaatg gctgcggcag atcttgtgcg gtacgcataa
    24181 tgcctttgtc ataggccagc gcgacatagc gttccaccat tagcggccag gcttctttat
    24241 cgagcacgcg tacatcgttg agtaaaccgt agcgcatctc gccgcgccag ccggtgcgat
    24301 gaggaatacc cgcgaagaaa ggcactaatg cagatttgaa ggagttgggt aagacgtagg
    24361 cgcggtcgta gcgcttttca cgcaggctat gacccagttt gcggcgttcg ccgatttcca
    24421 gcgctccgtg accgagaggc atagggatag cttcgttaac ttccggcatc cgcgataata
    24481 atggacggca ccatgccggt gccatcacat cgattatcgc ctggggatag cgcgcctgga
    24541 gcgtgcgata gagactttgc gacatcatca tgtcgccaac ccaagacggg ccgatcacca
    24601 gtattttcat gcagagctct tatgcgtcgc gattcagcca ggccatgtat tccgttacac
    24661 cttcagcaac ggttttgaac ggtttgtcgt aacccgccgc gcgcagattt gtcagatctg
    24721 cctgagtgaa cgcctggtag cggcctttca gcttatccgg gaacggaatg tattcgatct
    24781 ggcctttctt gtgataagcc agagtagcat ctgctacggc ctggaaggat tccgcacgac
    24841 cagtaccgag gttgaagata ccggaaacgc cattttccag gaaccacagg tttacatctg
    24901 ccacgtcgcc cacatagacg aagtcacgtt tgaagttctc gctaccttca aacagcttcg
    24961 gtgattcacc gttgttaagc tgagtgttga gatggaaagc gacgctcgcc atgctgcctt
    25021 tatggccttc acgcggtcca taaacgttga aatagcggaa gccaacaatc tgcgagttcg
    25081 cttcaggcag gatttggcga acatattcat caaacaggaa ttttgagtaa ccgtagacgt
    25141 tcaacggttt ttcgtactcg cgggattcaa taaagtcgga ggtgcgtccg ccgtaggtgg
    25201 ctgcggaaga agcgtacagg aacgggattt cgcgctccag gcagtagtgc agcagctcct
    25261 tggagtattg atagttgtta tccatcatat acttgccgtc ccactcggtg gtggaagagc
    25321 atgcgccttc gtggaaaatc gcttcgacat cgccgaactc ttcgccagcc ataatctgga
    25381 tcaggaagtc ttccttatcc atatagtccg cgatatccag atccaccagg ttcacaaact
    25441 tggtgccgtc tttcaggttg tccaccacca gaatatcggt gatgccttta tcattcaggg
    25501 ccttaacgat gttgctgccg ataaagcccg cgccgccggt aacgatgatc ataactgtaa
    25561 ccttcgaatt atggagtcag agacaatctc agacacgaat acttctatca tatcactata
    25621 cggcgttggc ttcagccatt cgccaaaagt gagattgatg gacgttattt atcctgaatt
    25681 ttgcagaagt gttaacgcgt catctcgtcg cgacgtataa gtttgggtaa tatgtgctgg
    25741 aatttgccct gtctggagaa tcgcaatgcg tggagaattt tatcagcagt taaccaacga
    25801 tctggaaacc gcacgggcgg aagggttgtt taaagaagag cgcattatta cgtctgcgca
    25861 gcaagcagat atcactgtgg ctgatggaag ccacgtcatt aacttttgtg ccaacaacta
    25921 tctcgggctg gcgaatcatc cggatctgat tgcggcagca aaggcgggaa tggattctca
    25981 cggtttcggc atggcttcgg tgcgttttat ttgcggcact caggacagcc ataaagagct
    26041 tgaacaaaaa ctggcggcat tcctggggat ggaagatgcg attctctact cttcctgctt
    26101 tgatgctaac ggtggactgt ttgaaacgct gctgggtgcg gaagacgcca ttatctccga
    26161 cgcactgaac cacgcgtcta ttattgatgg tgtgcgtctg tgcaaagcta aacgctatcg
    26221 ctatgccaac aacgatatgc aggagctgga agcacgtctg aaagaagcgc gtgaagccgg
    26281 tgcgcgtcat gtgctgattg ccaccgatgg tgtgttctca atggacggcg tgattgccaa
    26341 cctgaaaggc gtttgcgatc tggcagataa atacgatgcc ttggtgatgg tggatgactc
    26401 ccacgcggtc ggttttgtcg gtgaaaatgg tcgtggttcc catgaatact gcgatgtgat
    26461 gggccgggtc gatattatca ccggtacgct tggtaaagcg ctgggcgggg cttctggtgg
    26521 ttataccgcg gcgcgcaaag aggtggttga gtggctgcgc cagcgttctc gtccgtacct
    26581 gttctccaac tcgctggcac cggccattgt tgccgcgtcc atcaaagtac tggagatggt
    26641 cgaagcgggc agcgaactgc gtgaccgtct gtgggcgaac gcgcgtcagt tccgtgagca
    26701 aatgtcggcg gcgggcttta ccctggcggg agccgatcac gccattattc cggtcatgct
    26761 tggtgatgcg gtagtggcgc agaaatttgc ccgagagctg caaaaagagg gcatttacgt
    26821 caccggtttc ttctatccgg tcgttccgaa aggtcaggcg cgtattcgta cccagatgtc
    26881 tgcggcgcat acccctgagc aaattacgcg tgcagtagaa gcattcacgc gtattggtaa
    26941 acaactgggc gttatcgcct gaggatgtga gatgaaagcg ttatccaaac tgaaagcgga
    27001 agagggcatc tggatgaccg acgtccctgt accggaactc gggcataacg atctgctgat
    27061 taaaatccgt aaaacagcca tctgcgggac tgacgttcac atctataact gggatgagtg
    27121 gtcgcaaaaa accatcccgg tgccgatggt cgtaggccat gaatatgtcg gtgaagtggt
    27181 aggtattggt caggaagtga aaggcttcaa aatcggcgat cgcgtttctg gcgaaggcca
    27241 tatcacctgc ggtcactgtc gcaactgtcg tggcggtcgt acccatctgt gccgcaacac
    27301 gatcggcgtc ggcgttaacc gtccgggctg cttcgccgaa tatctggtga tcccggcgtt
    27361 caacgccttc aaaatcccag acaatatctc cgacgacctg gcttccattt ttgatccctt
    27421 cggtaacgcc gtgcataccg cgctgtcgtt cgatctggtt ggcgaggatg tgctggtctc
    27481 tggtgcaggt ccgataggta ttatggctgc ggcggtggcg aaacacgttg gtgcacgcaa
    27541 tgtggtgatc actgatgtta acgaataccg ccttgagctg gcgcgcaaaa tgggtatcac
    27601 ccgtgcggtt aacgtcgcga aagaaaacct taatgatgtg atggctgaac tgggcatgac
    27661 cgaaggcttt gatgtcggtc tggaaatgtc cggtgcgccg ccagcgtttc gtaccatgct
    27721 tgacaccatg aaccacggcg gccgtattgc gatgctgggt attccgccgt ctgatatgtc
    27781 tatcgactgg accaaagtga tctttaaagg cttgttcatt aaaggtattt acggtcgtga
    27841 gatgtttgaa acctggtaca agatggcggc gctgattcag tctggcctcg atctctcgcc
    27901 gatcattacc catcgtttct ctatcgatga tttccagaag ggctttgacg ctatgcgttc
    27961 gggccagtcc gggaaagtaa ttctgagctg ggattaacac gaacaagggc tggtattcca
    28021 gcccttttat ctggggataa tctgttgaat atgtaaaatc ctgtcagtgt aataaagagt
    28081 tcgtaattgc gctgatctct tatatagctg ttctcattat ctctctaccc tgaagtgact
    28141 ctctcacctg taaaaataat atctcacagg cttaatagtt tcttaataca aagcctgtaa
    28201 aacgtcagga taacttcaga ggtcgtcggt aatttatgat gaacagcacc aataaactta
    28261 gtgttattat tccgttatat aatgcgggcg atgatttccg cacttgtatg gaatctttaa
    28321 ttacgcaaac ctagactgct ctggaaatca ttattattaa cgatggttca acggataatt
    28381 ctgttgaaat agcaaagcat tacgcagaaa actatccgca cgttcgtttg ttgcatcagg
    28441 cgaatgctgg cgcatcggta gcgcgtaatc gtgggatcga ggtggcgacg ggcaaatatg
    28501 tcgcttttgt cgatgctgac gatgaggtct atcccaccat gtacgaaacg ctgatgacca
    28561 tggcgttaga ggacgacctc gacgtggcgc agtgcaacgc tgactggtct tttcgtgaaa
    28621 cgggagaaac ctggcaatcc atccccagcg atcgccttcg ctcaaccggc gtattaaccg
    28681 gcccggactg gctgcggatg gggctttctt cgcgccgttg gactcacgtt gtctggatgg
    28741 gggtttatcg ccgtgatgtt attgttaaaa ataacattaa atttattgcc ggattacatc
    28801 atcaggatat tgtctggaca acagaattca tgtttaacgc gctgcgtgcg cgatataccg
    28861 agcaatcatt atataaatat tatctgcata atacgtcagt gagtcggttg catagacaag
    28921 ggaataaaaa ccttaattat caacgtcact atattaagat tacccgcctg ctggagaaat
    28981 taaatcgaaa ttatgccgac aaaattacga tttatccgga atttcatcag caaataactt
    29041 acgaagcatt gcgtgtttgc catgcggtgc gcaaagagcc ggatattctt acccgccaac
    29101 ggatgattgc cgagatattt acttccggta tgtataagcg cctgattacc aatgtgcgca
    29161 gcgtgaaggt cggttaccag gcgttactgt ggtctttccg cttatggcaa tggcgcgaca
    29221 aaacgcggtc gcaccatcgc attacgcgta gcgcctttaa tttgcgctag cgttaaactt
    29281 cgccgcttcg ggctgtttgc cccagccttg ccactgatgc tggaagtaaa cgatcagcgt
    29341 gctctggctg atgctttcgc ttaatacttc aaagaagcga ttagcataaa caggttctat
    29401 cggtttcttc ggtttgcaca gcttcacgcc acggaacgga ttacgcggtg catcaggcac
    29461 agcgtttttc ggcggtgtag aagtatcaac ctgcggttca ttcagcaagc tgctggcttt
    29521 caccagcgta atgtctggcg gcaggttata aaccatctgt tgtagcacgc gtaccgttaa
    29581 agggtgagga tgcccaatgg caatggttga accgttgcga cgcgccagat caattgcgcg
    29641 attaaattgc acacggatgt ccgcttcgtt ctgcgaatcg tcgaggaaca ccttccgttt
    29701 aataaccttc acgccagtac cttgcgcggc gcgcatcgcc tgggtattac cgatggttac
    29761 gctgtcgagg aagtaaagat tgtaacgctc cagtgcctgc atcactttct gcataccaaa
    29821 caggttagag gtcatcttgc tacccatgtg gttgttgatc cccacggcat agggcacgtt
    29881 attgaccgca ctacgaataa tgcgctcaat ttcgtcgctg ctcatctccg ggcgcagcgt
    29941 atttttctcc agcggctgtt tactcagtgg tgccatcggg agatgaatca acacttcgtg
    30001 cccgctgtta tgcgctttgg tcgccatctc tctggcgtgc ggtgaatcgg gtaatacagc
    30061 gacggagata gcggagggca tcgccagcac ctggttttcg ttgtgcgggc gatacccaaa
    30121 atcatcaatg acgatggcaa gtttgccagc aagtacgggg gaggagagcg ccaacagagc
    30181 ggcaaatgca agaacgttac gacgaaatgg aaacaaaact tatcttccca accacggctg
    30241 tggattgacc gcctgaccct ggcggcgaat ttcgaaatag agtgaaggcc gaccctgacc
    30301 gccactgctg cccaccagtg caattggctg gcccgcgcga acctgcgaac caacgctcac
    30361 cagtgcgctc tgattatagc cgtaaagact catgtcgcct ttaccgtgct caaccaccac
    30421 caccagaccg taaccttgca gccagtcagc cagaatcact cgaccgtcgg caattgcttt
    30481 aacttcagta ccttcagagg caccgataac catccctttc cagcgtaatt caccctgtag
    30541 ctgctcgcca tagcgatgca gcgtcggccc gcgaactggc cagaatgcct gaccacgcgg
    30601 cgcacccaga ccaccagttc gggacatcag cgatttttcg ctttcggtcg gtttgtaggt
    30661 ggtgcctttg cgcgtcgctt ctttctggcg gtcgcgaacc gcctgggcct cacgcgcttc
    30721 tcgttcagca cgcgctttcg ccgcggcttc cgcacgggca atgctgttac gcagacggga
    30781 ttcgttggca cgcagttcac ttagctgctg ctgaccttgc tggatggaag attccagccc
    30841 cgccagcgtc tttttacgct cgttcagagc ctgagtcagt ttcgcctgtt gggcgcgctg
    30901 ttcatataac agcgtttgtt gctcgctttg tttctcttcc agttcagcac gctgcatggc
    30961 gacttcttca cgcgtttgct tcaactgggc aatggtttct tgtcgcgcct ggttgagata
    31021 gccgaaataa gcctgtaaac gctgtccaca ctggctttct tcaccgctga gaattagctg
    31081 aataccggta tgctcgccct gacggaatgc ggcatccagt tgtgcggcga ggctgcgctc
    31141 ctgggcggct ttttgctgct ccagtttggc aatcgacgcg ttcatctcat caatctgttt
    31201 attgagttga ttgagcgtgt tttgcgtttc gcgcagctta cgggtggctt cagagatcgc
    31261 ttcttcctgc tttttcaatt gtgcgagcag gcttgcgcgt tgttgttgct tttggcgtac
    31321 cgcgcgctct tttgcggcga tatcggcctg aatagatttg agttggtcac gctcatccgc
    31381 gtgggcggaa aaggcgcaca acaatacgcc agcgctaaga acgctggcgt agatgatggg
    31441 cctgattgca aacctgcgcg gtttcacggc ccgtgtcatg gtattaatcg cctttcccct
    31501 catggggagg gattattcca cgatgaacag cggcttacca gtcatctctt gcgggatttc
    31561 catacccatc agcgacaaca tggtcggcgc gatgtcagaa agtttgccgc ctgcaaccgc
    31621 tttcacgttc ttatcaccaa cgtaaatcag cggaactggc aggttggtgt gtgccgtgtg
    31681 tgcctgaccc gttgccggat cgcgcatctg ttcagcgtta ccgtggtcag cggtgatcag
    31741 cagttgtcca cccacggact caaccgcttt cgcgacttct tccacgcagt gatccagtgc
    31801 ttcaaccgct ttaaccgccg cttccatcac cccggtgtga cctaccatgt cgccgttcgg
    31861 atagttacag ataatggtgt cgtatttgcc gctcttgatg gccgcaacca gtttttcggt
    31921 cagctctgcg gagctcattt ccggttgcag atcgtaggta gccactttcg gtgagttgat
    31981 cagaatgcga tcttcgcctt tgaatgactc ttctacgcca ccgttgaaga agaaagtaac
    32041 gtgggcatat ttttcggttt cggaaatacg caactgagtt ttgtcgtttt tcgccatcca
    32101 ctcgccgaag gtgttaacca gggaagcggg tgggtaagca accgcagttt tgatgtcagc
    32161 ggcgtattcg gtcagcatca cgaaatcgac gttaaccact ttcttacgcg cgaagccgtc
    32221 gaaatctgcg tttacgaatg cacgagtgat ttcgcgcgcg cggtcagcac ggaagttcat
    32281 gaaaatcagc gcatcgccgt cttccattgc cgcatctggc tgaccttctg cacgaataac
    32341 ggtcgctttc acgaactcgt cgttttcgtc gcgagcataa gctgcctgca aaccagcaac
    32401 ggcagtatcg gcctggaact caccctgcgc cagagtcagc aggtcatagg ctttttcaac
    32461 gcgatcccaa cggttatcgc ggtccatcgc gtagtaacga ccaatgatgg acgctacgcg
    32521 gcctttaccc agcgcagcaa atttctcttc aaattttttc agcgaggatt cagcactgcg
    32581 cggcggggtg tcgcgaccgt caaggaatgc gtgcaggtag attttttctg cgccgcgttc
    32641 agctgccagt tctaccatcg ccatgatgtg atcttcgtgg ctgtgtacgc cgcctgcgga
    32701 gagcagaccc ataatgtgta ctgctttacc tgcgtttttc gctttatcta ccgcgccagt
    32761 cagcactgga ttagcaaaga aagcgcgatc tttgatttca acgtccagac gagtcaggtc
    32821 ctgatacacg atgcggccgg cacccaggtt aacgtggcct acttcggagt tacccatctg
    32881 acggtcaggc agaccgactt ccagaccgga agcgtcgatc agggtatgcg gacgattggc
    32941 ccacagtgca tccattaccg gggttttagc actaaaaatg gcgttatcct gctgttcttc
    33001 acgatagcca tagccatcca gaatcaccag taccataggt tttttagaaa ccgacattgc
    33061 gacaacctca tactcaagag tcaaaatttg cgtaatttta ctacagctga atcgataaaa
    33121 tagcctctga agatcaaaat atacgaccgc tcgcggcaag ccgatgccag atttgcgctt
    33181 ttttttcgtc gtgccccgca aaattgcatt ccagttaacg cgctggctgt atttgccgca
    33241 ccgcgcaggt atactccttt cctggttttt ttaatcacta cgtcgggagt tgttaccccc
    33301 catgcaagaa attatgcaat ttgttggccg tcatcccata ctgagtatcg cttggatcgc
    33361 gttactggtg gcggttcttg tgactacgtt taagagcctg acctcgaaag tgaaggtgat
    33421 tactcgtggt gaagctacgc gtctgatcaa caaagaagac gctgtggttg tggatttacg
    33481 tcagcgtgat gacttccgta aaggccatat cgcaggttct atcaatctgt tgccgagcga
    33541 aatcaaagcc aacaatgttg gtgagcttga gaagcacaaa gacaaaccgg ttatcgtggt
    33601 agacggttct ggcatgcagt gccaggagcc tgcaaacgcg ctgacgaaag ctggttttgc
    33661 gcaagtattc gtgctgaaag agggcgttgc tggctgggct ggcgaaaact tgcctctggt
    33721 gcgcggcaaa taatttacct gtcgtctttc atgatgcagg ccgttagctg caattaggcc
    33781 cccagcgact tattgttata agcttctggg gacactccat tttgcagccg ccctgcaaca
    33841 tgaaatttca gggtaaaaaa acaggagcta aattatggcc aatgttgaaa tctataccaa
    33901 agaaacctgc ccgtattgcc atcgtgcaaa agcactgctg agcagcaagg gcgtgagttt
    33961 tcaggagttg ccgatcgatg gcaatgccgc caagcgtgaa gagatgatca aacgcagcgg
    34021 tcgcaccacg gttccccaga tttttattga cgcacagcac attggcggct gtgatgactt
    34081 gtatgcattg gatgcacgtg gtggactgga tcccctgctg aaataacgtg tgaacgttgg
    34141 cattacattg cgcagtattt aaggacaaca cttaagggtt ttctacacat gtcagaacaa
    34201 aacaacactg aaatgacttt ccagatccaa cgtatttata ccaaggatat ctctttcgaa
    34261 gcgccgaacg cgccgcacgt tttccagaaa gattggcaac cagaagttaa acttgatctg
    34321 gatacggcat cttcccaact ggcagatgac gtatacgaag tggtactgcg tgttaccgta
    34381 acggcctccc tgggcgaaga aaccgcgttc ctgtgtgaag ttcagcaggg cggtattttc
    34441 tccatcgcgg gtatcgaagg cacccagatg gcacattgcc tgggcgcata ctgcccgaac
    34501 attctgttcc cgtatgctcg tgagtgcatc accagcatgg tatcccgcgg tacattcccg
    34561 caactgaacc ttgcgccggt taacttcgat gcgctgttca tgaactattt gcagcagcag
    34621 gctggcgaag gtactgaaga acatcaggat gcctgatgaa ccaacgtaat gcttcaatga
    34681 ctgtgatcgg tgccggctcg tacggcaccg ctcttgccat taccctggca agaaatggcc
    34741 acgaggttgt cctctggggc catgaccctg aacatatcgc aacgcttgaa cgcgaccgct
    34801 gtaacgccgc gtttctcccc gatgtgcctt ttcccgatac gctccatctt gaaagcgatc
    34861 tcgccactgc gctggcagcc agccgtaata ttctcgtcgt cgtacccagc catgtctttg
    34921 gtgaagtgct gcgccagatt aaaccgctga tgcgtcctga tgcgcgtctg gtgtgggcga
    34981 ccaaagggct ggaagcggaa accggacgtc tgttacagga cgtggcgcgt gaggccttag
    35041 gcgatcaaat tccgctggcg gttatctctg gcccaacgtt tgcgaaagaa ctggcggcag
    35101 gtttaccgac ggctatttcg ttggcctcta ccgaccagac ctttgccgat gatctccaac
    35161 aattgctgca ctgtggcaaa agtttccgcg tttacagcaa cccggatttc atcggtgtgc
    35221 agcttggcgg tgcggtgaaa aacgtcattg ccattggcgc ggggatgtcc gacggtatcg
    35281 gttttggtgc gaatgcgcgt acggcactga tcacccgtgg gctggctgaa atgtcgcgtc
    35341 ttggcgcggc gctgggtgcc gagcctgcca cctttatggg catggcgggg ctgggcgatc
    35401 ttgtgcttac ctgtaccgac aaccagtcgc gtaaccgccg ttttggcatg atgctcggtc
    35461 agggcatgga tgtacaaagc gcgcaggaga agattggtca ggtggtggaa ggctaccgca
    35521 atacgaaaga agtccgcgaa ctggcgcatc gcttcggcgt agaaatgcca ataaccgagg
    35581 aaatttatca agtattatat tgcggaaaaa acgcgcgcga ggcagcattg acgttattag
    35641 gtcgtgcacg caaggacgag cgcagcagcc actaacccca gggaaccttt gttaccgcta
    35701 tgacccggcc cgcgcagaac gggccggtca ttatctcatc gtgtggagta agtaatgtcg
    35761 tgtgaagaac tggaaattgt ctggaacaat attaaagccg aagccagaac gctggcggac
    35821 tgtgagccaa tgctggccag tttttaccac gcgacgctac tcaagcacga aaaccttggt
    35881 agtgcactga gctacatgct ggcgaacaag ctgtcatcgc caattatgcc tgctattgct
    35941 atccgtgaag tggtggaaga agcctacgcc gctgacccgg aaatgatcgc ctctgcggcc
    36001 tgtgatattc aggcggtgcg tacccgcgac ccggcagtcg ataaatactc aaccccgttg
    36061 ttatacctga agggttttca tgccttgcag gcctatcgca tcggtcactg gttgtggaat
    36121 caggggcgtc gcgcattggc aatctttctg caaaaccagg tttctgtgac gttccaggtc
    36181 gatattcacc cggcagcaaa aattggccgt ggcattatgc tcgaccacgc cacgggcatc
    36241 gttgtgggtg aaacggcggt aattgaaaac gacgtatcga ttctgcaatc tgtgacgctt
    36301 ggcggtacgg gtaaatctgg tggtgaccgt cacccgaaaa ttcgtgaagg tgtgatgatt
    36361 ggcgcgggcg cgaaaatcct cggcaatatt gaagttggtc gcggcgcgaa gattggcgca
    36421 ggttccgtgg tgctgcaacc ggtgccgccg catacaaccg ccgctggcgt tccggctcgt
    36481 attgtcggta aaccagacag cgataagcca tcaatggata tggaccagca tttcaacggt
    36541 attaaccata catttgagta tggggatggg atctaatgtc ctgtgatcgt gccggatgcg
    36601 atgtaatcat ctatccggca tacagtaact aatctctcaa caacgctccc ggatatccca
    36661 gctgccgcca ggcttcatac accactaccg acaccgcatt ggacagattc atgctgcggc
    36721 tgtccggcac catcggaatg cgaatttttt gttcagcggg cagggcatca agaatgctcg
    36781 ctggcaggcc gcgtgtttcc gggccgaaca tcagataatc gccatcctga tagcttacgg
    36841 cgctgtgagc aggcgtacct ttcgtggtga gggcaaacag gcgctgggga ttttctgctt
    36901 cgaggaacgc gcgatagtca tgatgacgcg taacggcggt aaactcgtga tagtccagcc
    36961 ccgcgcggcg caggcgctta tcgtcccagg caaatcccat cggttcgatg atatgcagac
    37021 gaaagccggt attagcgcaa agacggatga tgttgccagt atttggcgga atttctggtt
    37081 cgtaaagtac gatgtttagc atactgcccc cttagtgcgg gggcaggata gcagaaaatt
    37141 ggtgaaccgt gcggcctttt cccctcaccc cggccctccc cctgtctctt gatcaggaga
    37201 tctgatcaag agacagctcc ctgagggaga gggt
//
LOCUS       DAJVUY010000019        36825 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.019, whole genome shotgun sequence.
ACCESSION   DAJVUY010000019 DAJVUY010000000
VERSION     DAJVUY010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36825
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.019"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            582..668
                     /gene="leuL"
                     /locus_tag="OQQ72_000891"
     CDS             582..668
                     /gene="leuL"
                     /locus_tag="OQQ72_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HCS2010707.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            761..2332
                     /gene="leuA"
                     /locus_tag="OQQ72_000892"
     CDS             761..2332
                     /gene="leuA"
                     /locus_tag="OQQ72_000892"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCS2010708.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
                     AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            2332..3423
                     /gene="leuB"
                     /locus_tag="OQQ72_000893"
     CDS             2332..3423
                     /gene="leuB"
                     /locus_tag="OQQ72_000893"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HCS2010709.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            3426..4826
                     /gene="leuC"
                     /locus_tag="OQQ72_000894"
     CDS             3426..4826
                     /gene="leuC"
                     /locus_tag="OQQ72_000894"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCS2010710.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGQVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            4837..5442
                     /gene="leuD"
                     /locus_tag="OQQ72_000895"
     CDS             4837..5442
                     /gene="leuD"
                     /locus_tag="OQQ72_000895"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HCS2010711.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(5491..6573)
                     /locus_tag="OQQ72_000896"
     CDS             complement(5491..6573)
                     /locus_tag="OQQ72_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2010712.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(6675..6806)
                     /gene="sgrT"
                     /locus_tag="OQQ72_000897"
     CDS             complement(6675..6806)
                     /gene="sgrT"
                     /locus_tag="OQQ72_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HCS2010713.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            6895..8550
                     /gene="sgrR"
                     /locus_tag="OQQ72_000898"
     CDS             6895..8550
                     /gene="sgrR"
                     /locus_tag="OQQ72_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SgrR"
                     /protein_id="HCS2010714.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVNYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      8584..8683
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8714..9697
                     /gene="thiB"
                     /locus_tag="OQQ72_000899"
     CDS             8714..9697
                     /gene="thiB"
                     /locus_tag="OQQ72_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HCS2010715.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            9673..11283
                     /gene="thiP"
                     /locus_tag="OQQ72_000900"
     CDS             9673..11283
                     /gene="thiP"
                     /locus_tag="OQQ72_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HCS2010716.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            11267..11965
                     /gene="thiQ"
                     /locus_tag="OQQ72_000901"
     CDS             11267..11965
                     /gene="thiQ"
                     /locus_tag="OQQ72_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HCS2010717.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(12078..12842)
                     /locus_tag="OQQ72_000902"
     CDS             complement(12078..12842)
                     /locus_tag="OQQ72_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2010718.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV"
     gene            complement(12928..13806)
                     /gene="araC"
                     /locus_tag="OQQ72_000903"
     CDS             complement(12928..13806)
                     /gene="araC"
                     /locus_tag="OQQ72_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HCS2010719.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            14145..15845
                     /gene="araB"
                     /locus_tag="OQQ72_000904"
     CDS             14145..15845
                     /gene="araB"
                     /locus_tag="OQQ72_000904"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HCS2010720.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFDRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLNWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQTQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            15856..17358
                     /gene="araA"
                     /locus_tag="OQQ72_000905"
     CDS             15856..17358
                     /gene="araA"
                     /locus_tag="OQQ72_000905"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HCS2010721.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            17558..18253
                     /gene="araD"
                     /locus_tag="OQQ72_000906"
     CDS             17558..18253
                     /gene="araD"
                     /locus_tag="OQQ72_000906"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS2010722.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            18328..20679
                     /gene="polB"
                     /locus_tag="OQQ72_000907"
     CDS             18328..20679
                     /gene="polB"
                     /locus_tag="OQQ72_000907"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HCS2010723.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGSENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            20843..23749
                     /gene="rapA"
                     /locus_tag="OQQ72_000908"
     CDS             20843..23749
                     /gene="rapA"
                     /locus_tag="OQQ72_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HCS2010724.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHMPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            23761..24420
                     /gene="rluA"
                     /locus_tag="OQQ72_000909"
     CDS             23761..24420
                     /gene="rluA"
                     /locus_tag="OQQ72_000909"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HCS2010725.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(24537..25352)
                     /gene="djlA"
                     /locus_tag="OQQ72_000910"
     CDS             complement(24537..25352)
                     /gene="djlA"
                     /locus_tag="OQQ72_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HCS2010726.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            25607..27961
                     /gene="lptD"
                     /locus_tag="OQQ72_000911"
     CDS             25607..27961
                     /gene="lptD"
                     /locus_tag="OQQ72_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HCS2010727.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL"
     gene            28014..29300
                     /gene="surA"
                     /locus_tag="OQQ72_000912"
     CDS             28014..29300
                     /gene="surA"
                     /locus_tag="OQQ72_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HCS2010728.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            29300..30289
                     /gene="pdxA"
                     /locus_tag="OQQ72_000913"
     CDS             29300..30289
                     /gene="pdxA"
                     /locus_tag="OQQ72_000913"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HCS2010729.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMILNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            30286..31107
                     /gene="rsmA"
                     /locus_tag="OQQ72_000914"
     CDS             30286..31107
                     /gene="rsmA"
                     /locus_tag="OQQ72_000914"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HCS2010730.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFDELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            31110..31487
                     /gene="apaG"
                     /locus_tag="OQQ72_000915"
     CDS             31110..31487
                     /gene="apaG"
                     /locus_tag="OQQ72_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HCS2010731.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            31494..32336
                     /gene="apaH"
                     /locus_tag="OQQ72_000916"
     CDS             31494..32336
                     /gene="apaH"
                     /locus_tag="OQQ72_000916"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HCS2010732.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(32414..32893)
                     /gene="folA"
                     /locus_tag="OQQ72_000917"
     CDS             complement(32414..32893)
                     /gene="folA"
                     /locus_tag="OQQ72_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HCS2010733.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(33085..34947)
                     /gene="kefC"
                     /locus_tag="OQQ72_000918"
     CDS             complement(33085..34947)
                     /gene="kefC"
                     /locus_tag="OQQ72_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HCS2010734.1"
                     /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG
                     LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI
                     PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA
                     DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ
                     AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK
                     ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS"
     gene            complement(34940..35470)
                     /gene="kefF"
                     /locus_tag="OQQ72_000919"
     CDS             complement(34940..35470)
                     /gene="kefF"
                     /locus_tag="OQQ72_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HCS2010735.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(35578..36825)
                     /locus_tag="OQQ72_000920"
                     /pseudo
     CDS             complement(35578..36825)
                     /locus_tag="OQQ72_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414587.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         8962 a        10084 c         9687 g         8092 t
ORIGIN      
        1 tgcatataaa ataagaaaaa gcaaaatgag taaaattcgg aaaacataaa gatacgggtt
       61 ctgataaaaa cagaatccat tgccgtggaa tgagtcattt accacagcat aataatccat
      121 aatgtttttg ttgcgaaaac aatctaatca taactaccgc gaatactcaa tcatctacaa
      181 aatggattaa atgtgcttat ttaataatta atttatatat ttaatgcatt aattattaac
      241 attaatggat caataatatt caccatatca atatcaaaaa aaattcgcaa aacatataat
      301 tcaatacaaa tcatcaggat aggttttgca acgcgtgcat tttgtcccct ttttcctcgt
      361 tgattagatg caaaaattta ttctgaaata tgtcaaccta tgaaaagtgt cggtcgttaa
      421 acagaaatta atatcgcttg ctttaaccac cgcagcacaa ttagctaatt ttacggatgc
      481 agaactcgcg ctggcgggac gtttttattg cgtcagggtt gacatccgtt tttgtatcca
      541 gtaactctaa aagcatatcg cattcatctg gagctgattt aatgactcac atcgttcgct
      601 ttatcggtct actactacta aacgcatctt ctttgcgcgg tagacgagtg agcggcatcc
      661 agcattaagc cagcacgcag tcaaacaaaa aacccgcgcc attgcgcggg tttttttatg
      721 cccgaagcga ggcgctctaa aagagacaag gacccaaacc atgagccagc aagtcattat
      781 tttcgatacc acattgcgcg acggtgaaca ggcgttacag gcaagcttga gtgtgaaaga
      841 aaaactgcaa attgcgctgg cccttgagcg tatgggtgtt gacgtgatgg aagtcggttt
      901 ccccgtctct tcgccgggcg attttgaatc agtgcaaacc atcgcccgcc aggttaaaaa
      961 cagccgcgta tgcgcgttag ctcgctgcgt ggagaaagat atcgacgtgg cggccgaatc
     1021 cctgaaagtc gccgaagcct tccgtattca tacctttatt gccacttcgc caatgcacat
     1081 cgccaccaag ctgcgcagca cgctggatga agtgatcgaa cgcgctatct atatggtgaa
     1141 acgcgcccgt aattacaccg atgatgttga attttcttgc gaagatgccg ggcgtacccc
     1201 cattgccgat ctggcgcgag tggtcgaagc ggcgattaat gccggtgcca ccaccatcaa
     1261 cattccggac accgtgggct acaccatgcc gtttgagttc gccggaatca tcagcggtct
     1321 gtatgaacgc gtacctaaca tcgacaaagc cattatttcc gtacataccc acgacgattt
     1381 aggcctggcg gtcggcaact cactggcggc ggtacatgcc ggtgcacgcc aggtggaagg
     1441 tgcaatgaac gggatcggcg agcgtgccgg taactgttcg ctggaagaag tcatcatggc
     1501 gattaaagtt cgtaaggata ttctcaacgt ccacaccgcc attaatcacc aggagatatg
     1561 gcgcaccagc cagttagtta gccagatttg taatatgccg atcccggcaa acaaagccat
     1621 tgttggcagc ggcgcattcg cccactcctc cggtatccac caggatggcg tgctgaaaaa
     1681 ccgcgaaaac tacgaaatca tgacaccaga atctattggt ctgaaccaaa tccagctgaa
     1741 tctgacctct cgttcggggc gtgcggcggt gaaacatcgc atggatgaga tggggtataa
     1801 agaaagtgaa tataatttag acaatttgta cgatgctttc ctgaagctgg cggacaaaaa
     1861 aggtcaggtg tttgattacg atctggaggc gctggccttc atcggtaagc agcaagaaga
     1921 gccggagcat ttccgtctgg attacttcag cgtgcagtct ggctctaacg atatcgccac
     1981 cgccgccgtc aaactggcct gtggcgaaga agtcaaagca gaagccgcca acggtaacgg
     2041 tccggtcgat gccgtctatc aggcaattaa ccgcatcact gactataacg tcgaactggt
     2101 gaaatacagc ctgaccgcca aaggtcacgg taaagatgcg ctgggtcagg tggatattgt
     2161 cgccaactac aacggtcgcc gcttccacgg cgtcggcctg gccaccgata ttgtcgagtc
     2221 ctccgccaaa gccatggtgc acgtactgaa caatatctgg cgtgccgcag aagtcgaaaa
     2281 agagttgcaa cgcaaagctc aacacaacga aaacaacaag gaaaccgtgt gatgtcgaag
     2341 aattaccata ttgccgtatt gccgggggac ggtattggtc cggaagtgat gacccaggcg
     2401 ctgaaagtgc tggatgccgt gcgcaaccgc tttgcgatgc gcatcaccac cagccattac
     2461 gatgtaggcg gcgcagccat tgataaccac gggcaaccac tgccgcctgc gacggttgaa
     2521 ggttgtgagc aagccgatgc cgtgctgttt ggctcggtag gcggtccgaa atgggaacat
     2581 ttaccaccag accagcaacc agaacgcggc gcgctgttgc ctttgcgtaa gcacttcaaa
     2641 ttattcagca acctgcgtcc ggcaaaactg tatcaggggc tggaagcatt ctgtccgctg
     2701 cgtgctgaca ttgccgctaa cggcttcgac atcctgtgcg tgcgcgaact gaccggcggc
     2761 atctatttcg gtcagccaaa aggccgcgaa ggtagcggac agtatgaaaa agcgtttgat
     2821 accgaggtgt atcaccgttt tgagatcgaa cgtatcgccc gcatcgcgtt tgaatctgcc
     2881 cgcaagcgtc gccacaaagt cacctcaatc gacaaagcca acgtgctgca atcctctatt
     2941 ttatggcggg agatcgttaa cgagatcgcc acggaatacc cggatgtcga actggcgcat
     3001 atgtacatcg acaacgccac catgcagctg attaaagatc catcacagtt tgacgtcctg
     3061 ctgtgctcca acctgtttgg cgacattctg tctgacgagt gcgcaatgat cactggctcg
     3121 atggggatgt tgccttccgc cagcctgaac gagcaaggtt ttggtctgta tgaaccggca
     3181 ggcggctcag caccagatat cacaggcaaa aacatcgcca acccgattgc gcaaattctg
     3241 tcgctggcac tgctgctgcg ctacagcctg gatgccgatg atgcggcttg cgccattgaa
     3301 cgcgccatta accgcgcatt agaagaaggc attcgcaccg gggatttagc ccgtggcgct
     3361 gccgccgtta gtaccgatga aatgggcgat atcattgccc gctatgtggc agaaggggtg
     3421 taatcatggc taaaacgtta tacgaaaaat tattcgacgc tcacgtagtg tacgaagccg
     3481 aaaacgaaac cccgctgtta tatatcgacc gccacctggt gcatgaagtg acctcaccgc
     3541 aggcgttcga tggtctgcgc gcccacggtc gcccggtacg tcagccgggc aaaaccttcg
     3601 ccactatgga tcacaacgtc tctacccaga cgaaagacat taatgcctgt ggtgaaatgg
     3661 cgcgcatcca gatgcaggag ctgattaaaa actgcaaaga atttggcgtc gaactgtatg
     3721 acctgaatca cccgtatcag gggatcgtcc acgtaatggg gccggaacag ggcgtcacct
     3781 tgccggggat gaccattgtc tgcggcgact cgcataccgc cacccacggc gcgtttggcg
     3841 cactggcctt tggtatcggc acttccgaag ttgaacacgt actggcaacg caaaccctga
     3901 aacagggccg cgcaaaaacc atgaaaattg aagtccaggg caaagccgcg ccgggcatta
     3961 ccgcaaaaga tatcgtgctg gcaattatcg gtaaaaccgg tagcgcaggc ggcaccgggc
     4021 atgtggtgga gttttgcggc gaagcaatcc gtgatttaag catggaaggt cgtatgaccc
     4081 tgtgcaatat ggcaatcgaa atgggcgcaa aagccggtct ggttgcaccg gacgaaacca
     4141 cctttaacta tgtcaaaggc cgtttgcatg cgccgaaagg caaagatttc gacgacgccg
     4201 ttgcctactg gaaaaccctg caaaccgacg aaggcgcaac tttcgatacc gttgtcactc
     4261 tgcaagcaga agaaatttca ccgcaggtca cctggggcac caatccaggc caggtgattt
     4321 ccgtgaacga caatattccc gatccggctt cgtttgccga tccggttgaa cgcgcgtcgg
     4381 cagaaaaagc gctggcctat atggggctga aaccgggcat tccgctgacc gaagtggcta
     4441 tcgacaaagt gtttatcggt tcctgtacca actcgcgcat tgaagattta cgcgcggcag
     4501 cggagatcgc caaagggcga aaagtcgcgc caggcgtgca ggcactggtg gttcccggct
     4561 ctggccaggt aaaagcccag gcggaagcgg aaggtctgga taaaatcttt attgaagccg
     4621 gttttgaatg gcgcttgcct ggctgctcaa tgtgtctggc gatgaacaac gaccgtctga
     4681 atccgggcga acgttgtgca tccaccagca accgtaactt tgaaggccgc caggggcgcg
     4741 gcgggcgcac gcatctggtc agcccggcaa tggctgccgc tgctgctgtg accggacatt
     4801 tcgccgacat tcgcaacatt aaataaggag cagaccatgg cagagaaatt tatcaaacac
     4861 acaggcctgg tggttccgct ggatgccgcc aatgtcgata ccgatgcaat catcccgaaa
     4921 cagtttttgc agaaagtgac ccgtacgggt tttggcgcgc atctgtttaa cgactggcgt
     4981 tttctcgatg aaaaaggcca acagccaaac ccggacttcg tgctgaactt cccgcagtat
     5041 cagggcgctt ccattttgct ggcacgagaa aacttcggct gtggctcctc gcgtgagcac
     5101 gcgccctggg cattgaccga ctacggtttt aaagtggtga ttgcgccgag ttttgctgac
     5161 atcttctacg gcaatagctt taacaaccag ctgctgccgg tgaaattaag cgatgcagaa
     5221 gtggacgaac tgtttgcgct ggtgaaagcc aatccgggga tccatttcga cgtggatctg
     5281 gaagcgcaag aggtgaaagc gggagagaaa acctatcgct ttaccatcga tgccttccgc
     5341 cgccactgca tgatgaacgg tctggacagt attgggctta ccttgcagca cgacgacgcc
     5401 attgccgctt atgaagcaaa acaacctgcg tttatgaatt aatccccttg cccggtcaaa
     5461 tgaccgggct ttccgctatc gtccacgtca tcaaacgtct ttaacctttg cggttaaaaa
     5521 taatgcgaca acagaaataa ccgcaattac ccagtagaca gcaaagtgcc cccaactttg
     5581 tgcaattgct ccctgaataa cgccagccag aattaccccg gtagaaatac tgttagtaaa
     5641 taaggtggta gctgcccccg ctcttccagg cattaaatcc tgaaaccata gcatcccaat
     5701 acccgcaaca atgccgataa atacagcgtt aaaaagttgc agcgtcatca acgccatacg
     5761 gctatgaaag aaaatcaatc cggtgtaaaa cagtactcct gccgccactg ctatgaccat
     5821 cattcgccgc ttaccataac gtttgacata gtagccagcc agaatcattg ctggtatttc
     5881 cagtccagct gccgtcccca tcaggaaacc cgccagtttg tctggcaatc ctaactcgct
     5941 actgatccac aacggcatat caataatgta catggtgttg caggtccaca ttaacgtcga
     6001 ggcgacaaat aacatccgta cgttactatc ctgccagcca ccttgcattg ataaagcatt
     6061 ttccgacggc agttctaccc gcgccacaga cggaagcata aatgcaatca ataccagact
     6121 gagtgtgaat atcccggcgg caatcgaaaa catcaccact tctcgcgccg agttatccgc
     6181 atattcccgc gccagagcaa ataactgtgg cattgccgta ttggccagag atgccagaag
     6241 cacaccacag gtgataagcg tcagataatg acgattaaat gcaaacaatg gcgcattgcc
     6301 gatagccatc aaacagcaaa atataatcag ttttcgccga tcgccctgac tgtcagaacg
     6361 ttttgccaac cagaggctta cgccgatccc agcaatagta ttcaccgtat aaaagagtcc
     6421 gatccagaaa ggttgcgcgc caacctcacg actcagaaat aagctcaatg taggagcctg
     6481 tagcgccccg gccaccccca tcataaaagc gaccagcata aatgccgcgt aaacaccgtt
     6541 catacggcga gccatcgtca ttatccagat catacgttcc ctttttagcg cggcgagaat
     6601 aaaaaaaacc agcaggtata atctgctggc gggtgatttt acaccaatac tcagtcacac
     6661 atgatgcagg caagtcaact ttcagaattg cggtcatccc actgcatcag tccttcaagc
     6721 atggttaatc gttgtgggac gcttaaccaa cgcaaccagc acaacttcgc tgtcgcggta
     6781 aaatagtgct gataaaactg acgcatgggg cacctccttg cttcatcgtt aggaattatt
     6841 gacttaatat agggaaaata aaattgctgt cttttgcgca ggagttcccc ttttatgcca
     6901 tctgctcgtc tgcaacaaca gttcatccgc ctgtggcaat gctgcgaggg taaatcgcag
     6961 gacacaacgc tcaacgaact ggcagcgtta ttgagctgct cgcgtcgtca tatgcgtacc
     7021 ctgctcaaca ccatgcagga tcgcggctgg ctgacgtggg aagcggaagt cgggcgcggt
     7081 aaacgctcgc gtctgacatt cctctatacc gggctggcgc ttcagcaaca gcgggcggaa
     7141 gacctgctgg agcaggatcg tatcgaccaa ctagtgcagt tggttggcga caaagcgact
     7201 gtgcggcaaa tgctggtttc tcatctgggc cgcagcttcc gccaggggcg gcacatcctg
     7261 cgcgtgctct actatcgtcc gttgcgtaat ctgctacctg gcagcgcatt gcgccgttcc
     7321 gaaacccata ttgcccggca aatcttcagt tcgctaacgc gcataaatga ggaaaatggg
     7381 gaactggaag cagacatcgc ccaccactgg cagcaaatat caccgcttca ctggcgtttc
     7441 tttttgcgtc caggagtcca ttttcatcat ggtcgtgaac tggaaatgga cgacgtgatc
     7501 gcctctttaa aacgaatcaa tacgctgccg ctctattcgc atattgcgga cattgtgtcg
     7561 ccgacgccct ggacgctgga tatccatctc acgcaaccgg accgctggtt accgttactg
     7621 ctggggcaag ttccggcgat gatcctgccg cgcgaatggg aaaccctcag taactttgcc
     7681 agccatccca tcggcaccgg tccgtatgcg gtgatccgca acaccaccaa tcaactgaaa
     7741 attcaggcat tcgatgactt cttcggttac cgggcattaa tcgatgaagt taacgtctgg
     7801 gttctgccgg aaattgccga cgagccagct ggaggtctga tgctaaaagg tccacagggt
     7861 gaggaaaaag agattgaaag ccgcctggag gaaggttgct actatttact attcgacagc
     7921 cgcacccatc gcggagcgaa tcagcaagtc agggactggg taaactatgt gctttctcca
     7981 actaatctgg tctatttcgc tgaggaacag taccagcaac tgtggttccc ggcttatgga
     8041 ctgctccccc gttggcacca tgcccgcacc ataaagagcg aaaaaccggc tggcctggaa
     8101 agcctcaccc tgacctttta tcaggatcac agtgagcatc gggtgattgc cgggatcatg
     8161 cagcagattc tggcaagtca ccaggtcacg ctggaaatca aagagatcag ctacgatcag
     8221 tggcatgaag gagagatcga gagcgatatc tggcttaata gcgccaactt tacgctgccg
     8281 ctggattttt cgctgttcgc gcacttgtgc gaggtgccgc tgctccaaca ctgtattccg
     8341 atcgactggc aagccgacgc cgcccgctgg cgcaatggcg aaatgaacct ggcgaactgg
     8401 tgccagcaac tggtcgccag taaagcaatg gtgccgctta tccaccactg gctgatcatt
     8461 cagggacaac gcagtatgcg cggcctgcgt atgaataccc tcggctggtt cgattttaaa
     8521 tcagcgtggt ttgcgccgcc ggatccatga ttgctggtag ataacaaaat cactacacta
     8581 acgccgttct caacggggtg ccacgcaaac gcgtgcgctg agaaaatacc cgtcgaacct
     8641 gatccggata acgccggcga agggatttga ggctccttct caagtccttt gccactcttt
     8701 tttgaggtgc aaagtgttaa aaaaatgtct tcccctgctg ttgctgtgca cagcgcccgt
     8761 tttcgctaaa cccgttctga ctgtttatac ctacgattcc ttcgccgccg actgggggcc
     8821 tggtccaaag atcaaaaaag cttttgaagc cgactgtaac tgcgaactga aactggtggc
     8881 gctggaagat ggcgtttcgc ttctcaaccg tctacggatg gaaggcaaaa atagtaaagc
     8941 cgatgtggtg ctggggctgg ataacaatct gttagacgcc gccagtaaaa ccggactatt
     9001 tgccaaaagc ggtgtggcag cggatgccgt taacgttccc ggcggctgga ataatgacac
     9061 tttcgtcccg tttgattacg gctatttcgc cttcgtctat gacaagaaca aactgaaaaa
     9121 cccgccgcaa agcctgaaag aattggttga gagcgatcaa aactggcggg tgatttatca
     9181 ggatccgcgc accagtacgc cggggctggg cctgctgttg tggatgcaaa aagtctatgg
     9241 cgatgacgcc ccacaagcct ggcaaaaact ggcgaagaaa accgtcacgg tcaccaaagg
     9301 ctggagcgaa gcctacggcc tgtttttaaa aggtgaaagc gatctggtac tgagttacac
     9361 cacctctccg gcttatcaca ttctcgaaga gaaaaaagat aactacgccg ccgcgaactt
     9421 tagcgaaggt cactatctgc aggtggaagt cgccgcccgc accgctgcca gcaagcagcc
     9481 ggagctggcg caaaaattcc tccagtttat ggtttctccg gcttttcaga atgcgatccc
     9541 aaccggtaac tggatgtatc cggtggcaaa tgtcacgctg cctgccgggt ttgaacaatt
     9601 gaccaaaccg gccaccacgc tggagttcac accagctgaa gtggcggcac aacgtcaggc
     9661 atggattagc ggatggcaac gcgccgtcag ccgttaattc ccggctggtt aattccaggt
     9721 gtaagcgccg ccacgctggt ggtagcggtt gcgctcgcgg cgtttctcgc cctgtggtgg
     9781 aacgcgccgc agggtaactg ggtggcagtc tggcaggaca gctacctgtg gcatgtggtg
     9841 cgcttctcct tctggcaggc gtttctctcg gcgctactct ctgtcgtacc cgcgatattc
     9901 ctcgcccgcg ccctctatcg caggcgcttt ccgggtcggc tggcgctgtt gcgtctgtgc
     9961 gcaatgacct tgatcctccc ggtgctggtt gctgttttcg gcattcttag cgtctatggt
    10021 cgccagggct ggctggcatc gctctgccaa tcgctcggtc tggagtggac cttttcgccc
    10081 tacggcctgc aaggtatttt gctggcgcac gtatttttta atctgccgat ggcgagccgc
    10141 ttattactcc aggcactgga aaacattccc gacgaacaac gtcagcttgc cgcccagctt
    10201 gggatgcgcg gctggcattt tttccgcttc gtcgaatggc cgtggttacg gcgacaaatc
    10261 ccgccggttg ctgcacttat ctttatgctc tgtttcgcca gcttcgccac cgtgctatca
    10321 ctgggcggcg gtccgcaggc gaccactatc gagctggcta tttatcaggc gctgagttac
    10381 gactacgatc ctgcccgcgc ggcgatgctg gcgctgatcc agatggtgtg ttgccttggg
    10441 ctggtactat tgagtcagcg attgagtaag gccattgcgc caggcaccac gctgctgcaa
    10501 ggctggcgcg acccggacga tcgtctgcat agccgcattt gcgacacggt gttaatagtg
    10561 ctggcgttgc tgctgttgtt gccaccgttg ctggcggtga tcgtcgatgg ggtaaatcgc
    10621 cagttgccgg aagtgctggc acaaccggtg ctgtggcagg cgctgtggac ctcgttgcgt
    10681 attgcgctgg cggcaggtgt attgtgcgta gtgctgacca tgatgctgct atggagcagt
    10741 cgcgaacttc gggcacggca gaaaatgctg gcgggtcagg cgctggagat gagcggcatg
    10801 ttgattctcg ccatgccggg gattgtgctg gctaccggct tctttttact gctcaacaac
    10861 actatcggcc tgcaacaatc tgctgacggc attgtgattt tcaccaatgc gttaatggcg
    10921 atcccttatg cgctgaaagt actggaaaac ccgatgcgcg atatcaccgc ccgctacagt
    10981 atgttgtgtc agtcgctggg cattgaaggc tggtcgcgct taaaagtggt ggagctgcgc
    11041 gccctgaaac gtccactggc gcaggcgctg gcctttgcct gcgtgctgtc gattggtgat
    11101 tttggcgtgg tggcgttgtt cggtaacgat gatttccgta ccctgccgtt ttatctctac
    11161 cagcaaattg gctcctatcg cagccaggac ggcgcggtca ccgcgttaat tctgctgcta
    11221 ctctgttttc tgctgtttac cgtgattgaa aaactaccgg ggcgaaatgt taaaactgac
    11281 tgatatcacc tggctttacc aacatttgcc gatgcgtttt agcttaacgg tggaacgcgg
    11341 cgagcaggtg gcgatcctcg ggccaagcgg cgcaggtaaa agtaccctgc tgaatttgat
    11401 tgccggtttt ctgacgccag ccagcggttc gctgactatc gatggcgttg atcacaccac
    11461 gacgccgccg tcacgccgtc cggtgtcgat gctgtttcag gagaacaacc tgttcagcca
    11521 cctgacggtc gcgcagaaca tcgggctggg gcttaatcca ggattgaagc tgaacgcggc
    11581 acagcaggag aaaatgcacg ctatcgcccg tcagatgggg attgataatt taatggcgcg
    11641 gttaccgggc gagctttccg gcggccagcg acagcgcgtg gcgttagcgc gttgtctggt
    11701 gcgcgaacag ccgattttat tgctcgatga accgttctct gcgctcgatc cggcgttacg
    11761 tcaggagatg ctgacgctgg tgagcacgag ctgccagcag caaaaaatga cgctattgat
    11821 ggtgtcgcac agtgtggaag atgcggcgcg gatcgccaca cgctcggtgg tggtcgccga
    11881 cgggcgcatc gcctggcagg gtaagactga agaattgttg agcggtaagg cgagtgcttc
    11941 ggcaatattg gggattacgg gttagtatgc actgtcagat gcggcgtgaa caccttatcc
    12001 gacctacgga cagtgcgttt tgtaggcctg ataagaccgg tcagcgtcgc atcaggcaac
    12061 ccgcacaaga caatccccta aaccccaacc actttacgca aaatatcgat atacaccggc
    12121 atcaacgggt ggcgaattaa caccaccagc gccaccacgc cgatggcaga aatcaacggc
    12181 gtcagccaca acaaacggcc gcgcgacaaa taatgactta aacgatcggt tgctttaccg
    12241 ctgcgccata accgccagca cagccagcca ccaacccaca aaaataccgc cgtcgccagc
    12301 agcaaccatt taaactcgcc gctctgcatt ccggctggaa tatcgatcgc cgcgcccgcc
    12361 agaatcccag gcaggaagta aaacggtggc cacagcaggc agccgataat attcggcgta
    12421 atgaattttg ccaccggcag atccagcatt cccgccacca ttggcaccag cggacgcgtc
    12481 gggccaacaa agcgaccgac cagaatggtg aacatgctgt gttgatgcaa cgcatgttca
    12541 gttttatcga gtaatgcttt gtttttcttc agaaatgacc agcgatgcaa cggcttttta
    12601 aaacgccagc ccagccagaa ggagatccag tcgcccagca gacaaccgac aatccctgcc
    12661 agccaggcgt gccagaaact taactcgccg ctgccaatca gcgctcccag ccccgccatc
    12721 agcaccgtac cgggtagaat caaaccgacc agcgccagcg actccagaaa ggccaccaac
    12781 accaccgcca tcaatgaata cacggtagat tgggtaataa agtgttccag caatgcttgc
    12841 ataatgtgcc tgtcaaatgg acgaagcagg gattctgcaa accctatgct actccgtcaa
    12901 gccgtcaatt gtctgattcg ttaccaatta tgacaacttg acggctacat cattcacttt
    12961 ttcttcacaa ccggcacgga actcgctcgg gctggccccg gtgcattttt taaatacccg
    13021 cgagaaatag agttgatcgt caaaaccaac attgcgaccg acggtggcga taggcatccg
    13081 ggtggtgctc aaaagcagct tcgcctggct gatacgttgg tcctcgcgcc agcttaagac
    13141 gctaatccct aactgctggc ggaaaagatg tgacagacgc gacggcgaca agcaaacatg
    13201 ctgtgcgacg ctggcgatat caaaattgct gtctgccagg tgatcgctga tgtactgaca
    13261 agcctcgcgt acccgattat ccatcggtgg atggagcgac tcgttaatcg cttccatgcg
    13321 ccgcagtaac aattgctcaa gcagatttat cgccagcagc tccgaatagc gcccttcccc
    13381 ttgcccggcg ttaatgattt gcccaaacag gtcgctgaaa tgcggctggt gcgcttcatc
    13441 cgggcgaaag aaacccgtat tggcaaatat tgacggccag ttaagccatt catgccagta
    13501 ggcgcgcgga cgaaagtaaa cccactggtg ataccattcg cgagcctccg gatgacgacc
    13561 gtagtgatga atctctcctg gcgggaacag caaaatatca cccggtcggc aaacaaattc
    13621 tcgtccctga tttttcacca ccccctgacc gcgaatggtg agattgagaa tataaccttt
    13681 cattcccagc ggtcggtcga taaaaaaatc gagataaccg ttggcctcaa tcggcgttaa
    13741 acccgccacc agatgggcat taaacgagta tcccggcagc aggggatcat tttgcgcttc
    13801 agccatactt ttcatactcc cgccattcag agaagaaacc aattgtccat attgcatcag
    13861 acattgccgt cactgcgtct tttactggct cttctcgcta acccaaccgg taaccccgct
    13921 tattaaaagc attctgtaac aaagcgggac caaagccatg acaaaaacgc gtaacaaaag
    13981 tgtctataat cacggcagaa aagtccacat tgattatttg cacggcgtca cactttgcta
    14041 ttccatagca tttttatcca taagattagc ggatcctacc tgacgctttt tatcgcaact
    14101 ctctactgtt tctccatacc cgtttttttg gatggagtga aacgatggcg attgcaattg
    14161 gcctcgattt tggcagtgat tctgtgcgag ctttggcggt ggactgcgcc agcggtgaag
    14221 agatcgccac cagcgtagag tggtatcccc gttggcaaaa agggcaattt tgtgatgccc
    14281 cgaataacca gttccgtcat catccgcgtg actacattga gtcaatggaa gcggcactga
    14341 aaaccgtgct tgcagagctt agcgtcgaac agcgcgcagc tgtggtcggg attggcgttg
    14401 acagtaccgg ctcgacgccc gcaccgattg atgccgacgg taacgtgctg gcgctgcgcc
    14461 cggagtttgc cgaaaaccca aacgcgatgt tcgtattgtg gaaagaccac actgcggttg
    14521 aagaagcgga agagattacc cgtttgtgcc acgcgccggg caacgttgac tactcccgct
    14581 acattggtgg tatttattcc agcgaatggt tctgggcaaa aatcctgcat gtgactcgcc
    14641 aggacagcgc cgtggcgcaa tctgccgcat cgtggattga gctgtgcgac tgggtgccag
    14701 ctctgctttc cggtaccacc cgcccgcagg atattcgtcg cggacgttgc agcgccgggc
    14761 ataaatctct gtggcacgaa agctggggcg gcttgccgcc agccagtttc tttgatgagc
    14821 tggacccgat cctcaatcgc catttgcctt ccccgctgtt cactgacacc tggactgccg
    14881 atattccggt gggcacctta tgcccggaat gggcgcagcg tctcggcctg cctgaaagcg
    14941 tggtgatttc cggcggcgcg tttgactgcc atatgggcgc agttggcgca ggcgcacagc
    15001 ctaacgcact ggtaaaagtt atcggtactt ccacctgcga cattctgatt gccgacaaac
    15061 agagcgttgg cgagcgggca gttaaaggta tttgcggtca ggttgatggc agcgtggtac
    15121 ctggatttat cggtctggaa gcaggccaat cggcgtttgg tgatatctac gcctggtttg
    15181 atcgcgtact cggctggccg ctggaacagc ttgccgccca gcatccggaa ctgaaagcgc
    15241 aaatcaacgc cagccagaaa caactgcttc cggcgctgac cgaagcatgg gccaaaaatc
    15301 cgtctctgga tcacctgccg gtggtgctca actggtttaa cggccgccgc acaccgaacg
    15361 ctaaccaacg cctgaaaggg gtgattaccg atcttaacct cgctaccgac gctccgctgc
    15421 tgtttggcgg tttgattgct gccaccgcct ttggcgcacg cgcaatcatg gagtgcttta
    15481 ccgatcaggg gatcgccgtc aataacgtga tggcgctggg cggcatcgcg cggaaaaacc
    15541 aggtcattat gcaggcctgc tgcgacgtgc tgaatcgccc gctgcaaatt gttgcctctg
    15601 accagtgctg tgcgctcggt gcggcgattt ttgctgccgt cgccgcgaaa gtgcacgcag
    15661 acatcccatc agcccagcaa aaaatggcca gtgcggtaga gaaaaccctg caaccgcgca
    15721 gcgaacagac acaacgcttt gaacagcttt atcgccgcta tcagcaatgg gcgatgagcg
    15781 ccgaacaaca ctatcttcca acttccgccc cggcacaggc tgcccaggcc gttccgactc
    15841 tataaggaca cgataatgac gatttttgat aattatgaag tgtggtttgt cattggcagc
    15901 cagcatctgt atggcccgga aaccctgcgt caggtcaccc aacatgccga gcacgttgtt
    15961 aatgcgctga atacggaagc gaaactgccc tgcaaactgg tgttgaaacc gctgggcacc
    16021 acgccggatg aaatcaccgc tatttgccgc gacgcgaatt acgacgatcg ttgcgctggt
    16081 ctggtggtgt ggctgcacac cttctccccg gccaaaatgt ggatcaacgg cctgaccatg
    16141 ctcaacaaac cgttgctgca attccacacc cagtttaacg cggcgctgcc gtgggacagt
    16201 atcgatatgg actttatgaa cctgaaccag actgcacatg gcggtcgcga gttcggcttc
    16261 attggcgcgc gtatgcgtca gcaacatgcc gtggttaccg gtcactggca ggataaacaa
    16321 gcccatgagc gtatcggctc ctggatgcgt caggcggtct ctaaacagga tacccgtcat
    16381 ctgaaagtct gccgttttgg cgataacatg cgtgaagtag cggtcaccga tggtgataaa
    16441 gttgccgcac agatcaagtt cggtttctcc gtcaatacct gggcggttgg cgatctggtg
    16501 caggtggtga actccatcag cgacggcgat gttaacgcgc tggtcgatga gtacgaaagc
    16561 tgctacacca tgacgcctgc cacacaaatc cacggcgaaa aacgacagaa cgtgctggaa
    16621 gcggcgcgta ttgagctggg gatgaagcgt ttcctggaac aaggtggctt ccacgcgttc
    16681 accaccacct ttgaagattt gcacggtctg aaacagcttc caggtctggc cgtacagcgt
    16741 ctgatgcagc agggttacgg ctttgcgggc gaaggcgact ggaaaaccgc cgccctgctt
    16801 cgcatcatga aggtgatgtc aaccggtctg cagggcggca cctcctttat ggaggactac
    16861 acctatcact tcgagaaagg taatgacctg gtgctcggct cccatatgct ggaagtctgc
    16921 ccgtcgattg ccgtagaaga gaaaccgatc ctcgacgttc agcatctcgg tattggtggt
    16981 aaggacgatc ctgcccgact gatcttcaat acccaaaccg gtccagcgat tgtcgccagc
    17041 ctgattgatc tcggcgatcg ttaccgtctg ctggttaact gtatcgacac ggtgaaaaca
    17101 ccgcactccc tgccgaaact gccggtggcg aatgcgctgt ggaaagcgca accggatctg
    17161 ccaactgctt ccgaagcgtg gatcctcgct ggtggcgcgc accataccgt cttcagccat
    17221 gcgctgaacc tcaacgatat gcgtcagttc gccgagatgc acgacattga aatcacggtg
    17281 attgataacg acacccgcct gccagcgttt aaagacgcac tgcgctggaa cgaagtgtat
    17341 tacggatttc gtcgctaagt agccacatca ggtatgtaac gcctgatgcg acgctgacgc
    17401 gtcttatctg gcctacacgc tgcgattttg taggccggat aagcaaagcg catccggcat
    17461 tcaacgcctg atgcgacgct ggcgcgtctt atcaggccta cgcgctgcga ttttgtagac
    17521 cggataagcg aagcgcatcc ggcacgaagg agtcaacatg ttagaagatc tcaaacgcca
    17581 ggtattagaa gccaacctgg cgctgccaaa acacaacctg gtcacgctca catggggcaa
    17641 cgtcagcgcc gttgatcgcg agcgcggcgt ctttgtgatc aaaccttccg gcgtcgatta
    17701 cagcgtcatg accgctgacg atatggtcgt ggttagcatc gaaacaggtg aagtggttga
    17761 aggtacgaaa aagccctcct ccgacacgcc aactcaccgg ctgctctatc aggcattccc
    17821 ctccattggc ggcattgtgc atacgcactc gcgccacgcc accatctggg cgcagtcggg
    17881 tcagtcgatt ccagcaaccg gcaccaccca cgccgactat ttctacggca ccattccctg
    17941 cacccgcaaa atgaccgacg cagaaatcaa cggcgaatat gagtgggaaa ccggtaacgt
    18001 catcgtagaa acctttgaaa aacagggtat cgatgcagcg caaatgcccg gcgttctggt
    18061 ccattcccac ggcccgtttg catggggcaa aaatgccgaa gatgcggtgc ataacgccat
    18121 cgtgctggaa gaggtcgctt atatggagat attctgccgt cagttagcgc cgcagttacc
    18181 ggatatgcag caaacgctgc tggataaaca ctatctgcgt aagcatggcg cgaaggcata
    18241 ttacgggcag taatgactgt ataaaaccac agccaatcaa acgaaaccag gctatactca
    18301 agcctggttt tttgatggat tttcagcgtg gcgcaggcag gttttatctt aacccgacac
    18361 tggcgggaca ccccgcaagg gacagaagtc tccttctggc tggcgacgga caacgggccg
    18421 ttgcaggtta cgcttgcacc gcaagagtcc gtggcgttta ttcccgccga tcaggttccc
    18481 cgcgctcagc atattttgca gggtgaacaa ggctttcgcc tgacaccgct ggcgttaaag
    18541 gattttcacc gccagccggt gtatggcctt tactgtcgcg cccatcgcca attgatgaat
    18601 tacgaaaagc gcctgcgtga aggtggcgtt accgtctacg aggccgatgt gcgcccgcca
    18661 gaacgctatc tgatggagcg gtttatcacc tcaccggtgt gggtcgaggg tgatatgcac
    18721 aatggcacta tcgttaatgc ccgtctgaaa ccgcatcccg actatcgtcc gccgctcaag
    18781 tgggtttcta tagatattga aaccacccgc cacggtgagc tgtactgcat cggcctggaa
    18841 ggctgcgggc agcgcatcgt ttatatgctg gggtcggaga atggcgacgc ctcctcgctt
    18901 gatttcgaac tggaatacgt cgccagccgc ccgcagttgc tggaaaaact caacgcctgg
    18961 tttgccaact acgatcctga tgtgatcatc ggttggaacg tggtgcagtt cgatctgcga
    19021 atgctgcaaa aacatgccga gcgttaccgt cttccgctgc gtcttgggcg cgataatagc
    19081 gagctggagt ggcgcgagca cggctttaaa aacggcgtct tttttgccca ggctaaaggt
    19141 cggctaatta tcgacggtat cgaggcgctg aaatccgcgt tctggaattt ctcttcattc
    19201 tcgctggaaa ctgtcgctca ggagctatta ggcgaaggaa aatctatcga taacccgtgg
    19261 gatcgaatgg acgaaattga ccgccgtttc gccgaagata aacctgcgct ggcaacttat
    19321 aacctgaaag attgcgagct ggtgacgcag atcttccaca aaactgaaat catgccattt
    19381 ttactcgaac gggcaacggt gaacggcctg ccggtggacc gacacggcgg ttcggtggcg
    19441 gcatttggtc atctctattt tccgcgaatg catcgcgctg gttatgtcgc gcctaatctc
    19501 ggcgaagtgc cgccgcacgc cagccctggc ggctacgtga tggattcacg gccagggctt
    19561 tatgattcag tgctggtgct ggactataaa agcctgtacc cgtcgatcat ccgcaccttt
    19621 ctgattgatc ccgtcgggct ggtggaaggc atggcgcagc ctgatccaga gcacagtacc
    19681 gaaggttttc tcgatgcctg gttctcgcga gaaaaacatt gcctgccgga gattgtgact
    19741 aacatctggc acgggcgcga tgaagccaaa cgccagggta acaaaccgct gtcgcaggcg
    19801 ctgaaaatca tcatgaatgc cttttatggc gtgctcggca ccaccgcctg ccgcttcttc
    19861 gatccgcggc tggcatcgtc gatcaccatg cgtggtcatc agatcatgcg gcaaaccaaa
    19921 gcgttgattg aagcacaggg ctacgacgtt atctacggcg ataccgactc aacgtttgtc
    19981 tggctgaaag gcgcacattc ggaagaagaa gcggcgaaaa tcggtcgtgc actggtgcag
    20041 cacgttaacg cctggtgggc ggaaacgctg caaaaacaac ggctgaccag cgcattagaa
    20101 ctggagtatg aaacccattt ctgccgtttt ctgatgccaa ccattcgcgg agccgatacc
    20161 ggcagtaaaa agcgctacgc cgggctgatt caggagggcg ataaacagcg gatggtgttt
    20221 aaagggctgg aaaccgtgcg caccgactgg acgccgctgg cccagcagtt tcagcaggag
    20281 ctatacctgc gcatcttccg caacgagcca tatcaggaat atgtacgcga aaccatcgac
    20341 aaactgatgg cgggtgaact ggatgcgcga ctggtttacc gtaaacgcct tcgccgtccg
    20401 ctgagcgagt atcagcgtaa tgtgccgcct catgtacgcg ccgctcgcct tgccgatgaa
    20461 gaaaaccaaa agcgtggtcg ccccttgcaa tatcagaatc gcggcaccat taagtacgta
    20521 tggaccacca acggcccgga gccgctggac taccaacgtt caccactgga ttacgaacac
    20581 tatctgaccc gccagctaca acccgtggcg gagggaatac tcccttttat tgaggataat
    20641 tttgctacac ttatgaccgg gcaacttggg ctattttgag caaaaaaaga gttcgccaga
    20701 taccattttg atgcgtgacg aatgctttgc catccagtac catagcgccc tttccattcc
    20761 tggacctgaa taacaccact acctcataag cacggtagcg ggtggttatt gcctgcaatt
    20821 aaagatatag agccgaacac atatgccttt tacacttggt caacgctgga tcagcgatac
    20881 agaaagcgaa ttgggacttg gaaccgttgt cgcggtggat gcgcgaactg tcactttact
    20941 tttcccatct actggtgaaa accgtctgta cgcacgcagt gattcccccg tgacccgcgt
    21001 gatgttcaac cctggtgata ccattaccag ccatgacggc tggcagatgc aagtcgaaga
    21061 agtaaaagaa gaaaatggct tgctgaccta tatcggtact cgcctggata ctgaagagtc
    21121 cggcgtagcc ctgcgtgaag ttttccttga tagcaaactg gtgttcagca aaccgcagga
    21181 ccgcctgttt gccgggcaga ttgaccgtat ggaccgcttt gcgctgcgtt atcgcgcgcg
    21241 taagtattcc agcgaacagt tccgtatgcc gtacagcggc ctgcgcggtc agcgtaccag
    21301 cctgatcccg caccagctca acatcgctca tgatgttggc cgccgccacg cgccgcgcgt
    21361 cctgctggct gacgaagtgg gtttagggaa aaccattgaa gccgggatga tcctgcatca
    21421 gcaactgctc tctggcgctg ctgaacgtgt gctgattatc gtcccggaaa ccttacagca
    21481 tcagtggctg gtagaaatgc tgcgccgttt caacctgcgc tttgctctgt ttgatgatga
    21541 gcgttatgcc gaagctcagc acgatgctta caacccgttc gacaccgaac agctggtgat
    21601 ttgctcgctg gattttgccc gtcgtagcaa acagcgcctg gaacatctct gtgaagccga
    21661 atgggacctg ctggtggtcg atgaagcgca tcacctggtg tggagcgaag atgcgccaag
    21721 ccgtgaatat caggccattg aacaactggc agagcacatg ccgggcgttc tgctgctgac
    21781 cgcgaccccg gaacagctgg ggatggaaag ccacttcgcc cgtctgcgtc tgctggaccc
    21841 gaaccgtttc cacgattttg cgcagttcgt tgaagagcag aaaaattatc gtccggttgc
    21901 ggacgccgtt gccatgctgc tggcaggtaa caaactgagc aatgacgaac tgaacatgct
    21961 cggcgagatg atcggcgagc aggatatcga gccgctgttg caggcagcaa acagcgacag
    22021 cgaagatgcc cagagcgccc gtcaggagct ggtttcgatg ctgatggatc gccacggcac
    22081 cagccgcgtg ctgttccgta acacgcgtaa cggtgtgaaa ggattcccga aacgcgagct
    22141 gcacaccatt aagctgccgc taccgacgca gtatcagacg gctattaaag tctccggcat
    22201 tatgggcgca cgtaaaagtg cggaagatcg tgctcgcgat atgctctacc cggagcgtat
    22261 ttatcaggaa tttgaaggtg ataacgccac ctggtggaac ttcgatccgc gcgttgagtg
    22321 gctgatgggc tacctgacca gccatcgctc tcagaaagtg ctggtgatct gcgccaaagc
    22381 tgccactgcg ctgcaactgg agcaggtact gcgcgaacgt gaaggtattc gcgctgcggt
    22441 gttccacgaa ggtatgtcga ttatcgaacg tgaccgcgct gccgcctggt ttgccgaaga
    22501 agacaccggc gcacaggtac tgctgtgctc agaaatcggt tctgaaggac gtaacttcca
    22561 gttcgccagc cacatggtga tgtttgacct gccattcaac ccggatctac tggagcagcg
    22621 tattggtcgt ctggatcgta tcggccaggc gcacgatatt cagatccatg tgccttatct
    22681 ggagaaaacc gctcagtcgg tgctggtgcg ctggtatcac gaaggtctgg atgcatttga
    22741 gcacacctgc ccgaccggac gcactattta cgatagcgta tacaacgatc tgattaacta
    22801 tctggcttca ccggatcaaa ccgaaggctt tgacgatctg atcaaaaact gccgcgagca
    22861 acatgaagcg ctgaaagcac agctggaaca gggtcgtgac cgcctgctgg aaatccactc
    22921 caacggtggc gaaaaagccc aggcactggc agaaagcatt gaagagcagg atgacgatac
    22981 caacctgatc gccttcgcca tgaacctgct cgatattatc ggtatcaatc aggacgatcg
    23041 cggcgacaac atgatcgtgc tgacgccgtc cgatcatatg ctggtgccgg acttccctgg
    23101 cctgtcggaa gatggcatca ccatcacctt tgatcgtgaa gtggcgctgg cgcgtgaaga
    23161 tgcacagttt attacctggg agcatccgct gatccgcaac ggtctggatc tgatcctttc
    23221 tggcgatacc ggtagcagca cgatttcact gttaaaaaac aaagcgttgc cggtaggtac
    23281 gctgttggtg gaactgattt atgtggttga agcccaggct ccgaagcagt tgcagctcaa
    23341 ccgcttcctg ccaccgacgc cggtacgtat gctgctggat aaaaacggca acaacctggc
    23401 ggcgcaggta gagtttgaaa cctttaaccg ccagcttaac gcggttaacc gtcacaccgg
    23461 cagcaaactg gttaacgccg tgcagcagga tgttcacgct atccttcaac tgggtgaagc
    23521 gcagatcgag aaatctgccc gtgcattgat tgatgcagcg cgtaacgaag ccgacgaaaa
    23581 actgtctgcc gagctgtctc gtctggaagc tctgcgtgca gtgaacccga acattcgtga
    23641 cgacgaactg accgccattg agagcaaccg tcagcaggta atggaaagcc tggatcaggc
    23701 aggttggcgt ctggatgccc tgcgtttgat cgttgtaacg catcagtaac ggagccgaaa
    23761 atggggatgg aaaactacaa tccaccgcag gaaccctggt tggttatcct gtatcaggat
    23821 gaccacatta tggtggttaa caagccgagc ggtttgttgt ctgtgccggg gcgtctggaa
    23881 gagcacaaag acagcgtgat gacgcgcatt cagcgtgatt atccgcaggc agaatcggtg
    23941 catcgtctgg atatggctac cagcggcgtg attgtagtgg cgctgaccaa agccgcggag
    24001 cgggagttaa aacgccagtt ccgcgagcgc gagccgaaaa agcagtatgt ggcccgcgtc
    24061 tgggggcatc catcccctgc ggaaggtctg gtggatctgc cgctgatttg cgactggcca
    24121 aaccgcccga aacagaaagt ctgttacgaa acgggtaaac ctgcgcagac ggaatatgaa
    24181 gtggtggagt atgcggcgga taacacggca agagtggtgt taaaaccgat tactgggcgt
    24241 tcgcatcaat tgcgtgtgca tatgctggcg ctggggcatc cgattctcgg cgatcgtttt
    24301 tatgcatcac cagaagcgag agcgatggca ccgcgtttgt tgctacatgc agagatgttg
    24361 acgattaccc atccggcgta tggcaatagt atgacgttta aagcgccagc ggatttttaa
    24421 tagtcacgct ggcgcagttc ggtaggcgga taaggcgttc acgccgaatc cggcaattgt
    24481 gcgccgattg cctgatgcga cgcgggccgc gtcttatcag gcctacagtt taaaacttat
    24541 ttaaaccctt tctgctgctt tatcagctca tatgcctgct gaatttcctg cgctttctgc
    24601 ttcgccatct ccatcatctc aggcggcaaa cctttcgcca ccagcttatc gggatggtgt
    24661 tcactcatca gcttacggta ggctcgttta atggtggtcg catcatccgt cggcttcaca
    24721 cccagcacat tacaggcatc ttccagcgtc gggccacgct gcgcttgctg ccagttacca
    24781 ccgccagatt gctgctgata accgccgcca aactgtgcac cgccctgcat catgcgcaaa
    24841 aactggtcaa actgggcgcg ggagatccct aattcttctg caatgacata cagcaccgcc
    24901 cgttcattcg ggtgcagtga accatcagca aacgccgcct gaatctggat ctccagaaac
    24961 atacgaatta agtcaaaacg accaaagcag acactgcgaa actggcgcat cttttcgcgc
    25021 agcgggtaat tgtctgattt tcccacccgg aacgcgtttt gcgccgcagt acgggaagcg
    25081 ccatgaaggt tcattcggtc catcagctgg ctggcgatat gaatatcagc ctccgtgacg
    25141 cgacctttgg atttggttaa atgccccatc acttcaaaag tggtggcaaa aaacagcgcc
    25201 tgacgctcac gctggttggc gaaccacgcc attttacggc tacgggcttt atcaaacata
    25261 tggccaatta acaggcctaa cactacgccc caaaagccgc cgcccatcag taaggccacg
    25321 gccacgccaa tgatttttcc ccaatactgc atatattccc caaatcgaca cacggatatc
    25381 agggctatct cccacaatat aaaggtgctt ttaccgtttt ccggctgcag tcaattgtgg
    25441 gacatcgcct ataatttgca ttatcatacc tgtcattcaa tgccgtgcct aacaccactg
    25501 acgctattcg gacaggatta acactagcgt agagatgacg agtacgttag tctctgaccg
    25561 tttgtcacgc gcaacgttac cgatgatgga acaataaaat caacgtatga aaaaacgtat
    25621 ccccactctc ctggccacca tgattgccac cgccctttat agtcaacagg gactggcagc
    25681 cgacctcgcc tcacagtgca tgttgggcgt gccaagctat gaccgtcctc tggtacaggg
    25741 cgataccaat gacttacccg tgactatcaa tgctgaccac gcgaaagggg actacccgga
    25801 tgacgccgtg tttactggca gcgtggatat catgcagggt aacagccgtc tgcaggccga
    25861 cgaagtgcag ctccatcaaa aagaggcacc aggacaaccg gagccggtac gaaccgttga
    25921 tgcgctcggt aatgtccatt acgacgataa ccaggtgatc ctcaaagggc cgaaaggctg
    25981 ggcgaatctg aacaccaaag ataccaacgt ctgggaaggt gattaccaga tggtgggtcg
    26041 ccagggccgc ggtaaagcgg acctgatgaa acaacgtggt gaaaaccgct ataccattct
    26101 ggataacggt agctttacct cctgtctgcc gggttctgac acctggagcg tggtaggtag
    26161 cgaaattatt catgaccgcg aagaacaagt tgcggagatc tggaacgccc gctttaaggt
    26221 gggtccagta ccgatctttt atagccccta tttgcagttg ccggtgggtg acaaacgtcg
    26281 ctctggtttc ttgatcccga acgccaagta caccaccacc aactactttg agttctacct
    26341 gccatattac tggaacatcg cgccaaatat ggatgccacc atcacgccgc attatatgca
    26401 tcgtcgtggc aacatcatgt gggagaacga attccgctac ctctcccagg cgggcgctgg
    26461 cttgatggaa ctggactatc tgccttcaga taaagtctat gaagatgaac acccgaacga
    26521 tgacagttca cgtcgttggt tgttctactg gcaacactcc ggggtcatgg atcaagtgtg
    26581 gcgtttcaac gtagactaca ccaaggtcag cgatcctagc tacttcaatg atttcgataa
    26641 caagtacggt tccagtactg acggctacgc aacgcaaaaa ttcagcgttg gctatgcggt
    26701 gcaaaacttc aatgccaccg tttcaaccaa gcagttccag gtctttagcg agcagaacac
    26761 cagtagctac tcggcagagc cgcagttaga cgttaactac taccagaatg atgttggtcc
    26821 gtttgatacg cgtatttacg gccaggcagt gcactttgtt aacaccagag acgacatgcc
    26881 tgaagcaacc cgtgttcacc tggaaccgac catcaatttg ccgctctcta ataactgggg
    26941 cagcatcaat accgaagcga agttgctggc aacccattat cagcaaacca atcttgactg
    27001 gtataactcc agaaacacga ccaagctgga cgaatccgtt aaccgcgtta tgccgcaatt
    27061 caaagttgac ggcaaaatgg tctttgaacg cgatatggaa atgctggctc cgggttatac
    27121 ccaaacgctg gaaccgcgcg cgcagtattt gtacgtgccg tatcgcgatc agagcgacat
    27181 ctataactac gactcgtctc tactgcaatc tgactactct ggcctgttcc gggaccggac
    27241 ttacggcggt cttgaccgta ttgcctccgc taaccaggtg acgaccggtg tcacatctcg
    27301 catatatgat gatgctgccg ttgaacattt taatatttcc gttggtcaaa tctactattt
    27361 cacggagtct cgcactggcg atgacaacat aacatgggag aatgacgaca aaacgggctc
    27421 actggtgtgg gcaggcgata cttactggcg tatctccgag cgttggggat tgcgtggcgg
    27481 gattcagtac gatacacgtc tggataacgt agcgaccagt aactccagca ttgaataccg
    27541 tcgggatgaa gaccgtctgg tacagctgaa ttaccgttac gccagcccgg aatatattca
    27601 ggctacgctg cctaagtact attccactgc tgagcaatat aagaatggta tttcgcaggt
    27661 aggtgctgtc gccagctggc caattgccga tcgttggtcc attgttgggg cctactacta
    27721 cgacaccaat gcgaacaagc aagccgactc tatgttaggt gtgcaataca gctcctgctg
    27781 ctatgcaatt cgcgtcggtt acgagcggaa gctgaacggt tgggataacg ataaacaaca
    27841 tgcggtatat gacaacgcaa tcggctttaa catcgaactt cgcggcctga gctccaacta
    27901 cggtctgggt acgcaagaga tgctgcgttc gaacattctg ccgtatcaaa acactttgtg
    27961 atttgttgat ttaccacgta atccgcagtg cggttaattg aaatggaaaa agtatgaaga
    28021 actggaaaac gctgcttctc ggtatcgcca tgatcgcgaa taccagtttc gctgcccccc
    28081 aggtagtcga taaagtcgca gccgtcgtca ataacggcgt cgtgctggaa agcgacgttg
    28141 atggattaat gcagtcggta aaactgaacg ctgcgcaggc aaggcagcag cttcctgatg
    28201 acgcgacgct gcgccaccaa atcatggaac gtttgatcat ggatcaaatc atcctgcaga
    28261 tggggcagaa aatgggagtg aaaatctccg atgagcagct ggatcaggcg attgctaaca
    28321 tcgcgaaaca gaacaacatg acgctggatc agatgcgcag ccgtctggct tacgatggtc
    28381 tgaactacaa cacctatcgt aaccagatcc gcaaagagat gattatctct gaagtgcgta
    28441 acaacgaggt gcgtcgtcgc atcaccatcc tgccgcagga agtcgaatcc ctggcgcagc
    28501 aggtgggtaa ccaaaacgac gccagcactg agctgaacct gagccacatc ctgatcccgc
    28561 tgccggaaaa cccgacttct gatcaggtga acgaagcgga aagccaggcg cgcgccattg
    28621 tcgatcaggc gcgtaacggc gctgatttcg gtaagctggc gattgctcat tctgccgacc
    28681 agcaggcgct gaacggcggc cagatgggct ggggccgtat tcaggagttg ccgggtatct
    28741 tcgcccaggc attaagcacc gcgaagaaag gcgacattgt tggcccgatt cgttccggcg
    28801 ttggcttcca tattctgaaa gttaacgacc tgcgcggcga aagcaaaaat atctcggtga
    28861 ccgaagttca tgctcgccat attctgctga aaccgtcgcc gatcatgact gacgaacagg
    28921 cccgtgtgaa actggaacag attgctgccg atatcaagag tggtaaaacg acttttgctg
    28981 ccgcagcgaa agagttctct caggatccag gctctgctaa ccagggcggt gatctcggct
    29041 gggctacacc agatattttc gatccggcct tccgtgacgc cctgacccgc ctgaacaaag
    29101 gtcaaatgag tgcaccggtt cactcttcat tcggctggca tttaatcgaa ctgctggata
    29161 cccgtaatgt cgataaaacc gacgctgcgc agaaggatcg tgcataccgc atgctgatga
    29221 accgtaagtt ctcggaagaa gcagcaagct ggatgcagga acaacgcgcc agcgcctacg
    29281 ttaaaatcct gagcaactaa tggttaaaac ccaacgtgtt gtgatcactc ccggcgagcc
    29341 cgccgggatt ggcccggact tagttgtcca gcttgcacag cgtgagtggc cggtcgaact
    29401 ggttgtttgt gccgatgcca ctctccttac cgaccgggca gcgatgctcg gtttgccgct
    29461 caccctccgc ccttattccc ccaactcccc tgcacaaccg caaactgcgg gcacattaac
    29521 gctacttcct gtcgcgctac gcgaatctgt cactgcgggg cagttagcga ttgaaaatgg
    29581 gcattacgtg gtggagacgc tggcgcgagc gtgtgatggc tgtctgaacg gtgaatttgc
    29641 tgcgctgatc acaggccccg tgcataaagg cgtcattaac gacgcaggta ttccgtttac
    29701 tggtcatacc gagtttttcg aagagcgctc gcaggcgaaa aaagtggtga tgatgctggc
    29761 gaccgaagaa cttcgcgtgg cgctggcaac gacgcattta ccgctgcgcg atatcgcaga
    29821 tgctatcacc cctgcacttt tgcacgaagt gattgctatt ttgcatcacg atttgcgtac
    29881 aaaatttggt attgccgaac cgcgcattct ggtctgcggg ctgaatccgc acgcgggcga
    29941 aggcggtcat atgggtacgg aagagataga caccattatt ccggtgctcg acgagctgcg
    30001 ggcgcagggg atgatactca acgggccgct gcctgccgat accctgtttc agccgaaata
    30061 tctcgataac gccgacgccg tgctggcgat gtaccacgat cagggtcttc ccgtgctaaa
    30121 ataccagggc ttcgggcgcg gtgtgaacat tacgctgggc ctgcccttta ttcgcacatc
    30181 agtggaccac ggcaccgcgc ttgaactggc gggacgtggc gaagccgatg tcggcagttt
    30241 tattacggcg cttaatctcg ccatcaaaat gattgttaac acccaatgaa taatcgagtc
    30301 caccagggcc acttagcccg taaacgcttc gggcaaaact ttctcaacga tcagttcgtg
    30361 atcgacagca ttgtttctgc cattaacccg caaaagggcc aggcaatggt cgaaatcggc
    30421 cccggtctgg cggcattgac cgagccggtc ggcgaacgtc tggaccagct gacggtcatc
    30481 gaacttgacc gcgatctggc ggcacgtctg caaacgcatc cattcttagg cccgaaactg
    30541 acgatttatc agcaggatgc gatgaccttt aactttgacg aactggccga gaaaatgggt
    30601 cagccgctgc gtgttttcgg caacctgcct tataacatct ccacgccgtt gatgttccat
    30661 ctgtttagct atactgatgc cattgccgac atgcacttta tgttgcaaaa agaggtggtg
    30721 aatcgtctgg ttgcaggacc gaacagcaaa gcgtatggtc gattaagcgt catggcgcaa
    30781 tactattgca acgtgatccc ggtactggaa gttccgccgt cagcctttac accaccaccc
    30841 aaagtggatt ccgccgtcgt gcgcctggtt cctcatgcaa cgatgcctca cccggttaaa
    30901 gatgttcgtg tgttgagccg catcaccacc gaagccttta accagcgtcg taaaaccatt
    30961 cgtaacagcc tcggcaacct gtttagcgtc gaggtgttaa cgggaatggg gatcgacccg
    31021 gcgatgcgag cggaaaatat ctctgtcgcg caatattgcc agatggcgaa ctatctggcg
    31081 gagaacgcgc ctttgcagga gagttaacga tgatcaattc gccccgagtg tgtattcagg
    31141 ttcaaagcgt ctacattgag gcacaatctt cacctgataa tgaacgttac gtttttgctt
    31201 ataccgtaac catacgcaat ctggggcgag cgccagtgca gttgttgggg cgttactggc
    31261 tgatcaccaa tggcaatggc cgtgaaaccg aagtccaggg cgaaggagtg gttggcgtcc
    31321 agccacttat cgcgcctggc gaagagtacc agtacaccag cggtgcaatc attgaaaccc
    31381 cgctgggcac catgcagggt cactacgaaa tgatcgatga aaatggcgtc cctttcagca
    31441 tcgacattcc cgtattccga ctcgccgttc ccacactcat tcattaaaag aatatggcga
    31501 cataccttat tggcgacgtt catggttgtt acgatgaact gatcgcattg ctgcataaag
    31561 tagaatttac ccctgggaaa gataccctct ggctgacggg cgatctggtc gcgcgcggcc
    31621 cgggttcgct ggatgttctg cgctatgtga aatccttagg cgacagcgta cgtctggtgc
    31681 tgggcaatca cgatctgcat ctgctggcgg tatttgccgg gatcagccgc aataaaccga
    31741 aagatcgcct gacaccgctg ctggaagcgc cggatgccga cgagctgctt aactggctgc
    31801 gtcgccagcc tttgctgcaa atcgacgaag agaaaaagtt ggtgatggcc cacgcaggga
    31861 tcacgccgca gtgggatcta cagaccgcca aagagtgcgc gcgcgatgta gaagcggtgc
    31921 tatcgagtga ctcctatccc ttctttctcg acgctatgta cggcgatatg ccaaataact
    31981 ggtcaccgga attgcggggg ctgggaagac tgcgttttat caccaacgcc tttacccgta
    32041 tgcgtttttg cttcccgaac ggtcaactgg atatgtacag caaagaatcg ccggaagagg
    32101 cccctgcccc actgaaaccg tggtttgcga ttcctggccc tgtcgctgaa gaatacagca
    32161 tcgcctttgg tcactgggca tcgctggagg gcaaaggtac gccggaaggt atatacgcgc
    32221 tggataccgg ctgctgctgg ggtggtacat taacctgcct gcgctgggaa gataaacagt
    32281 attttgtcca gccgtcgaac cggcataagg atttgggcga agcggcggcg tcttaaacac
    32341 agcctgatat aggaaggccg gataagacgc gaccggcgtc gcatccggca ctagccgtaa
    32401 attctataca aaattaccgc cgctccagaa tctcaaagca atagctgtga gagttctgcg
    32461 catcagcatc gtggaattcg ctgaataccg attcccagtc atccggctcg taatccggga
    32521 aatgggtgtc gccttccact tctgcgtcga tatgcgtcag atacagtttc tgcgcttttg
    32581 gcaggaactg ctcataaacg cgaccgccgc caatcaccat gatttctggt acgtcaccac
    32641 acgccgcgat ggcttcatcc accgacttca cccacgttac gcgatcgtcc gtacccggtt
    32701 gactgctgag gataatattt ttgcgtcctg gcaacggacg accgattgat tcccaggtat
    32761 ggcggcccat aatcacgggt ttatttaagg tgttgcgttt aaaccaggcg agatcggcag
    32821 gcaggttcca cggcatggcg ttttccatgc cgataacgcg atctaccgct aacgccgcaa
    32881 tcagactgat cattgagatt tcccgataaa aaaaattgtc gccactatac gtaaagcgta
    32941 aaccgtcgtc gactggtgcg aggatgatgt tgaggaaaat tttatattct gctggcgagt
    33001 ccacgctctc tccctggact cgccgcatta caatgaaaca aaaacaaaca gttagctgta
    33061 aagtgtgatt tatgtcactc tttattagga tgagggtttc gtttccggtt catccgccat
    33121 gttgccggta tgtttacctt cttcggttcc ctgccagcca tgtcgttgaa ttaatgacag
    33181 atgttcgcgg tcctcggtaa tgatctcact taacatcgcg ctggtgcgtt tatagaccgc
    33241 cgcgcgggct ttggtgtcgt tctcaaccat tgccatctct tccaccatct gaatattaaa
    33301 gcggcggaac acatcggcac gttctcgcgc ttcatacggc cccagaccta aactttccag
    33361 tgccagacgc ccggttttca gcgcaccttc gaaggtttca cgctccggct tttcaacgcc
    33421 tgcctgacgc aaacgaatgt agtggtcgac atcgcgggcg cgggcaataa tctgcaaatg
    33481 cgggaagtgt tctttcacca tctctgtcag ttgcaggttg gtttgcggat cgtcgatggc
    33541 gttaatcagc acttccgctt tcgccgctcc cgcagattcc agtaaatcca tccgcgtggc
    33601 atcgccataa aacactttca taccaaattt acgcaaggtt tcgatatggt ccggatcgtg
    33661 atcgagcacc accattttca ccccgctgga gagcagtaaa cgtccggtga tctgcccaaa
    33721 acgaccgaat ccggcaatga ttacccgcgg ctgttcttcg tcgatctcat cggcttcacg
    33781 cgcctcttca gtagaagatt gctcaaggcg attgaggatc accagcagaa tcggcgttgc
    33841 cgccatcgac agcgccaccg ccagggtcag cgatttcgcc cactccggct ccagcacatt
    33901 cgccatctgc gccgcgccaa ataccacaaa ggcaaactca ctgccctgcc ctaacaacac
    33961 cgcaaaccaa cgacgctgtt tatttggcac ttgcaacggt cgggcaatca gccacagcat
    34021 ggcgattttg atgatgagga aaccgagcag caaaatgaca atgcgcaatg ggttttcaag
    34081 cagcgtgcca aagtctatcg acatgccaac accgatgaaa aacagcccca acagcaaacc
    34141 tttaaagggt tcgatatcgc tctccagcgc atgacggtat tccgagcttg ccagcagtac
    34201 gcccgccaga aacgcgccca tcgccatcga caagccgacc tcttccagca gcaaaccaaa
    34261 gccaaacacg aggaataacg ccacggcact aaacacttcc cgcaagccag agcgggctac
    34321 aaaacgcagc gccggacgcg tgacatagcg ccccagcaat accaccagca ccagcgcacc
    34381 cgccactttt aacgccgaga gagcaaatgc gcccatcgtc gtcgaggcac tgctcgttgc
    34441 cagtagcgga atcatcgcca ccagcgggat cgccgcgata tcctggaaca gcagcaccgc
    34501 aaaggcactg cgacccattt gcgtcaccat cagattgcgt tcattcatcg cctgcatggc
    34561 aatcgccgta gaggagagcg ccagcgtcat gccgatcaat tccgcgacct gccagcgcag
    34621 cccaagtaac atgcagaaca gccccagcag gccgccgcaa atcaccatct gcaatgcgcc
    34681 accgccgaac actgccgcac gcagcttcca cagcctttgt ggatcgagtt cgaggccgat
    34741 aataaacagc atcagcacca ccccaatctc ggcaaagtgc agaatagatt cggcatcggt
    34801 caccagtcgc agcccccacg ggccaataat gcagccggcg atcaggtagc caagtaccga
    34861 tcccagacca agacgtaccg caatgggtac aatcagcgct gccgaaccga gataaatcag
    34921 cgcctgaatc agcgtatggc tatccatgat gggcctcctg ccattccagc agacgttgct
    34981 tatagtgacg cgcctgccct tcgagggttt cgtcgtcaca aataaaggtg cagtgcatgg
    35041 caaacggtgg cagccagttc agcccgcagt agattgccgt cgcctgtagc ggctgcgaca
    35101 gcacatcaaa gcccggatgc gcaccaattt caaaatggct ttccccgccg ccggtcgtca
    35161 ccgcccacag caaatgtttg ccatgcagcg ccttgccgcc gtgaccgtaa gcccagccgt
    35221 gcgacaaaac tttatcgatc caaagtttaa gaagcggagg aatgctgtac cactgcatcg
    35281 gatgctgcca gacgatcaga tcggcgcgag acagcgcctc ctgctcggcg gcaatatcga
    35341 tattgaagtc aggatagagt tgataaagag agcgaatttc gacgccttcc agcgtccttg
    35401 cctgttcaag catccgttta ttcgcatggg aatgatgcgg atacggatgc gcataaatta
    35461 taagaatcat aggtagcccg cgtgattacg cctttgtttt cccacaaagt gtagtcatat
    35521 attcacgcgg cttatagtca ataatattga ttcagaaaag agagaaatct gaacaattta
    35581 ccccattctc tgcccgcgga tcgtcatatt gctggtttgc gccaatgaca tccctcgatg
    35641 tctccggggc aaacgctacg gaaatcaaca agccaaacag cgagataccc gcccccatta
    35701 gcatcgtgtt actgataccg taattattga taaagatcgg cagtgcccag gtcgaaacaa
    35761 tggtgccaat acggcttaag gacataatca cgcccacggc agaggcgcgg atatctgtcg
    35821 ggaagagttc attaggatag agccactgca aattacccgg cccgccagag aaaaaggcat
    35881 acaccgcaaa ggccatcact accagccaga tccccatatc cgggatcagc cccaaaaccg
    35941 ccagcgccag cgtcatcatg gcaaagctgc caatcaacaa tggacgccgt ccggcagtgt
    36001 ttaaccacag catcggcgga atacagccga gcataaagaa caggctaatc accacgttcc
    36061 ccagcgccgc gtttttgcca acacccaatc ccaacaaacc aacgatttgc gggccaaagg
    36121 tgtaaatggc gaacattggg atcacctggc aggtccagat ggcggcaaca aacagaacaa
    36181 aaggaaaatg gcggcgatta aacagatcgc gaaaacgggt ttgctgcggc tgctcttcat
    36241 cgaaagccac cggttcgcca aacagtttta tcatcatctc ttcgcactct tttactcgcc
    36301 ctttgcgtaa taaccagcgg ggagattcag gcagttcgaa tcgaccaatc aaaatcaaca
    36361 aacaggggat cgccgcgcta cccagcatcc agcgccagcc gccttccaca tcataaagcc
    36421 agtagccgac cagatcggcg caggtcgcgc cgacatacca catggcggcg ataaagctga
    36481 tggaaaatgc ccgctgacgg gtactggaga actcggtgat cattgaggtg gcgatgggat
    36541 aatcggcacc gatgacaatg ccgataagta cccgcatcac caacagttcg acgggggatg
    36601 aaacaaacat cgtcgccacc gatatcacgc cgatgacgat gatatcaatg aggaacattt
    36661 tgcgccgtcc gactttatcg gaaatatagc caaacagcga tgtgccaacg aacagcccgg
    36721 cgagcgttcc cgcgcccaac aagccaatcc agtcagcgtc cagttttagc gccggagtca
    36781 gttgctccag cgccacgcca atcattacca gtacataacc atcca
//
LOCUS       DAJVUY010000020        36624 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.020, whole genome shotgun sequence.
ACCESSION   DAJVUY010000020 DAJVUY010000000
VERSION     DAJVUY010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36624
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.020"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            93..989
                     /locus_tag="OQQ72_000921"
     CDS             93..989
                     /locus_tag="OQQ72_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2010736.1"
                     /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE
                     QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT
                     YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
                     LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN
                     PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI
                     RNHRYTATMLQHIAEDRDGTNH"
     gene            complement(986..2464)
                     /gene="scpC"
                     /locus_tag="OQQ72_000922"
     CDS             complement(986..2464)
                     /gene="scpC"
                     /locus_tag="OQQ72_000922"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HCS2010737.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSF
                     VDLHLSEVAQMVNYGFFGDIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIE
                     LNHYHDPRVAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPD
                     AGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENP
                     EIPPFMMYSEVLQESVVHLLETDKISGASASSLTISADSLRKIYDNMDYFASRIVLRP
                     QEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFERNAYLSI
                     FMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRARTIIDNCA
                     HPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG"
     gene            complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="OQQ72_000923"
     CDS             complement(2488..3273)
                     /gene="scpB"
                     /locus_tag="OQQ72_000923"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HCS2010738.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="OQQ72_000924"
     CDS             complement(3284..4279)
                     /gene="meaB"
                     /locus_tag="OQQ72_000924"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HCS2010739.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="OQQ72_000925"
                     /pseudo
     CDS             complement(4272..6416)
                     /gene="scpA"
                     /locus_tag="OQQ72_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(6620..7513)
                     /gene="argP"
                     /locus_tag="OQQ72_000926"
     CDS             complement(6620..7513)
                     /gene="argP"
                     /locus_tag="OQQ72_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator ArgP"
                     /protein_id="HCS2010740.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            7896..8555
                     /gene="rpiA"
                     /locus_tag="OQQ72_000927"
     CDS             7896..8555
                     /gene="rpiA"
                     /locus_tag="OQQ72_000927"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HCS2010741.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            8810..10042
                     /gene="serA"
                     /locus_tag="OQQ72_000928"
     CDS             8810..10042
                     /gene="serA"
                     /locus_tag="OQQ72_000928"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS2010742.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            10271..10330
                     /gene="ibsC"
                     /locus_tag="OQQ72_000929"
     CDS             10271..10330
                     /gene="ibsC"
                     /locus_tag="OQQ72_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HCS2010743.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            10663..10722
                     /locus_tag="OQQ72_000930"
     CDS             10663..10722
                     /locus_tag="OQQ72_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS2010744.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(10823..11425)
                     /locus_tag="OQQ72_000931"
     CDS             complement(10823..11425)
                     /locus_tag="OQQ72_000931"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCS2010745.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQQEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(11446..11629)
                     /gene="ssrS"
                     /locus_tag="OQQ72_000932"
     ncRNA           complement(11446..11629)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="OQQ72_000932"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="OQQ72_000933"
     CDS             complement(11671..12000)
                     /gene="zapA"
                     /locus_tag="OQQ72_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCS2010746.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            12168..12746
                     /gene="ygfB"
                     /locus_tag="OQQ72_000934"
     CDS             12168..12746
                     /gene="ygfB"
                     /locus_tag="OQQ72_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HCS2010747.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            12772..14097
                     /gene="pepP"
                     /locus_tag="OQQ72_000935"
     CDS             12772..14097
                     /gene="pepP"
                     /locus_tag="OQQ72_000935"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCS2010748.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            14094..15272
                     /gene="ubiH"
                     /locus_tag="OQQ72_000936"
                     /gene_synonym="visB"
     CDS             14094..15272
                     /gene="ubiH"
                     /locus_tag="OQQ72_000936"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HCS2010749.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            15295..16497
                     /gene="ubiI"
                     /locus_tag="OQQ72_000937"
                     /gene_synonym="visC"
     CDS             15295..16497
                     /gene="ubiI"
                     /locus_tag="OQQ72_000937"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HCS2010750.1"
                     /translation="MQCVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(16571..16654)
                     /locus_tag="OQQ72_000938"
     CDS             complement(16571..16654)
                     /locus_tag="OQQ72_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010751.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            16944..18038
                     /gene="gcvT"
                     /locus_tag="OQQ72_000939"
     CDS             16944..18038
                     /gene="gcvT"
                     /locus_tag="OQQ72_000939"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HCS2010752.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            18062..18451
                     /gene="gcvH"
                     /locus_tag="OQQ72_000940"
     CDS             18062..18451
                     /gene="gcvH"
                     /locus_tag="OQQ72_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCS2010753.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            18570..21443
                     /gene="gcvP"
                     /locus_tag="OQQ72_000941"
     CDS             18570..21443
                     /gene="gcvP"
                     /locus_tag="OQQ72_000941"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HCS2010754.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSHEVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            21709..22452
                     /locus_tag="OQQ72_000942"
                     /pseudo
     CDS             21709..22452
                     /locus_tag="OQQ72_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(22509..23942)
                     /gene="bglA"
                     /locus_tag="OQQ72_000943"
     CDS             complement(22509..23942)
                     /gene="bglA"
                     /locus_tag="OQQ72_000943"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase BglA"
                     /protein_id="HCS2010755.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            23987..24298
                     /locus_tag="OQQ72_000944"
     CDS             23987..24298
                     /locus_tag="OQQ72_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HCS2010756.1"
                     /translation="MQPNDITFSQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDDYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            24462..25121
                     /locus_tag="OQQ72_000945"
     CDS             24462..25121
                     /locus_tag="OQQ72_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HCS2010757.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSMCHFLAIYLYIGQ
                     A"
     gene            complement(25317..26297)
                     /gene="ygfZ"
                     /locus_tag="OQQ72_000946"
     CDS             complement(25317..26297)
                     /gene="ygfZ"
                     /locus_tag="OQQ72_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HCS2010758.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAADDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            26540..26806
                     /gene="sdhE"
                     /locus_tag="OQQ72_000947"
     CDS             26540..26806
                     /gene="sdhE"
                     /locus_tag="OQQ72_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HCS2010759.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI"
     gene            26787..27194
                     /locus_tag="OQQ72_000948"
     CDS             26787..27194
                     /locus_tag="OQQ72_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HCS2010760.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(27234..27755)
                     /gene="fldB"
                     /locus_tag="OQQ72_000949"
     CDS             complement(27234..27755)
                     /gene="fldB"
                     /locus_tag="OQQ72_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HCS2010761.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            27867..28763
                     /gene="xerD"
                     /locus_tag="OQQ72_000950"
     CDS             27867..28763
                     /gene="xerD"
                     /locus_tag="OQQ72_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HCS2010762.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            28788..29498
                     /gene="dsbC"
                     /locus_tag="OQQ72_000951"
     CDS             28788..29498
                     /gene="dsbC"
                     /locus_tag="OQQ72_000951"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HCS2010763.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            29504..31237
                     /gene="recJ"
                     /locus_tag="OQQ72_000952"
     CDS             29504..31237
                     /gene="recJ"
                     /locus_tag="OQQ72_000952"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCS2010764.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            31328..32426
                     /gene="prfB"
                     /locus_tag="OQQ72_000953"
     CDS             join(31328..31402,31404..32426)
                     /gene="prfB"
                     /locus_tag="OQQ72_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCS2010765.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            32436..33953
                     /gene="lysS"
                     /locus_tag="OQQ72_000954"
     CDS             32436..33953
                     /gene="lysS"
                     /locus_tag="OQQ72_000954"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCS2010766.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(33996..34544)
                     /gene="idi"
                     /locus_tag="OQQ72_000955"
     CDS             complement(33996..34544)
                     /gene="idi"
                     /locus_tag="OQQ72_000955"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HCS2010767.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            34599..34670
                     /locus_tag="OQQ72_000956"
     CDS             34599..34670
                     /locus_tag="OQQ72_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010768.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(34667..34792)
                     /locus_tag="OQQ72_000957"
     CDS             complement(34667..34792)
                     /locus_tag="OQQ72_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010769.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
     gene            complement(34794..36242)
                     /gene="uacT"
                     /locus_tag="OQQ72_000958"
     CDS             complement(34794..36242)
                     /gene="uacT"
                     /locus_tag="OQQ72_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417364.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate/proton symporter UacT"
                     /protein_id="HCS2010770.1"
                     /translation="MSAIDSQLLSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAG
                     AVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFA
                     AVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSVGL
                     SIIQVGIDWAAGGKGNPQYGNPVYSGISFAVLIFILLITRYAKGFMSNVAVLLGIVFG
                     FLLSWMMNEVNLSGLHDALWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFL
                     ALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVC
                     ISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYN
                     LYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHAD
                     LVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE"
BASE COUNT         8822 a         9224 c         9798 g         8780 t
ORIGIN      
        1 ccccccggat catggacgac tgggggcagt aatcatgccg ggtctggctg gctaacaccc
       61 cattataagg ggtacgaata aagtaacggg ggatggacat ttttatttcg aaaaagatgc
      121 gcaatttcat tttattagcg caaaccaata atattgcccg ggcggcagaa aaaatccata
      181 tgacggcttc gccatttggt aaaagcattg ccgcgctgga agaacaaatt ggctatacgc
      241 tatttacccg caaagataat aatatcagcc tcaataaagc cggtcaggaa ctgtatcaaa
      301 aactgttccc ggtttatcaa cgactttctg cgattgataa tgaaatccat aactcagggc
      361 gtcgttcacg agaaattgtg attggcatag ataatactta tccgacaatt attttcgatc
      421 agttgattag tctcggagat aagtatgaag gcgtgaccgc ccagccagtt gagttcagcg
      481 aaaacggcgt tatcgataat ctttttgacc gtcagttaga ttttattatc tccccacagc
      541 atgtatctgc acgagttcag gaactggaaa acctgactat cagtgaatta ccaccgctgc
      601 gattgggctt tctcgtttct cgccgttatg aagagcgtca agagcaagag ctgcttcagg
      661 agctgccctg gctacaaatg cgctttcaaa accgggctaa cttcgaagca atgattgatg
      721 cgaatatgcg accttgtggg atcaatccca ccattattta tcgtccctac agttttatgg
      781 ccaaaatcag cgccgtggag cgcggacatt ttctgacggt gatcccgcat tttgcctggc
      841 gactggtgaa tccggcaacg ctgaaatatt ttgatgcgcc gcacaggccg atgtatatgc
      901 aggaatatct ttattcaatc agaaatcatc gttataccgc cacgatgctt cagcatattg
      961 ctgaagatcg tgacgggaca aaccattaac ccagcatcga gccggttgca attaaattac
     1021 ggtgtaagtc gaagacgtgg ctaagatcgt ggtgaatatg tccgccgggc gcattttcca
     1081 gatagcgatg cagataatcc cgatacatag gatgtgcaca attatcaatg atagtgcggg
     1141 cgcgttgaag cggggaaaga ccgcgcagat cggcgatccc ttgttcggtg atgatcactt
     1201 tgacgctgtg ttcgctgtga tcaacatggc tgcacattgg cacgacggtt gagatcttgc
     1261 cttctttagc aatcgacgga gccataaaga tcgacagata cgcgttgcgt tcaaaatcac
     1321 cgctgccgcc gatgccgttc atcagatcga ccccggctac gtgcgttgaa tttgcatgcc
     1381 cgtaaatatc aaactccagg ccgacgttca gagcgatgac gcccagacga cggatgattt
     1441 ccgggttatt ggaaatctcc tgcggacgca acacaatgcg gctggcaaag taatccatat
     1501 tgtcgtaaat cttgcgcagg gaatcggccg agattgtcag gctggaggcg ctggccccgc
     1561 tgattttgtc ggtttccagt aaatgcacca ccgattcctg tagcacttcc gaatacatca
     1621 tgaacggagg aatttccggg ttttccccca gacgcgccat taccgcatta ttgatattgc
     1681 ccacgccact ttgcagcggc agaaattccg gcggaatacg cccatgcgcc atttcctgca
     1741 ataagaacgt gaccacgtta tcggcaatct gctggcacat gggattttgc ttatccagca
     1801 tattaccggc gtcgggcaag ttggtttcca cgacggcgac aatctttttc ggatcgattt
     1861 gcacatagcg ggtaccgacg cgatccattg catggaagat cgacacgcta ttgcgccgcg
     1921 gtggcgcgcc aggaatcaca atatctgcca gttctgcaac gcgcggatcg tgatagtgat
     1981 taagttcaat gatcactttc ttcgctcgca gcagccaggt cggcgcatta ccgatcccgc
     2041 tggttaacca gactcgacca tccggtgcca gtgccgatgc ttcaatgacg gcaacatcaa
     2101 tgtcgccgaa gaaaccgtaa ttgaccattt gcgccacttc gctcaaatgc aggtcaacga
     2161 aactcaccgc gccctgattg atctttttac gtaaaccgga cgatgtttga tatggcgcac
     2221 gccaggaaac agcatcggcg tcagaaagta catcgtcagc ggcggcgctg attgacgccc
     2281 ccgtcagcag gcgaatttga tacggctttt tggcctcatg ctgttcgtta gctctgcggg
     2341 caatcgcggt gggtagggct ttcggcgaac ccgccggggt aaagccgcta aatgccacca
     2401 tgtcgttatg ctggataatt tctgccgctt catcggcggt catccttgtc cactgagttt
     2461 ccatttttac tccttcgttc gcagggatta atgaccaacg aaattaggtt tacgtttttc
     2521 gaggaaagcg ttcattcctt cctggtaatc ttcgctgtca taaaccgcgc gtcgcatccc
     2581 ctgaatacgt tcaaattcat cggagttcat ggtgtgcgct tcgcccagta cacgcagctc
     2641 ttctttgata acagcaatgg ctaacggcgc tttctcagag atgtggtgcg ccatttgtaa
     2701 ggtgaaatct tccagttctt ccacttccac aacatggttg aggatgccga cagccagcgc
     2761 gcgctgggcg gtgattggcg aagcggtaaa aatcagctct ttgacaatgt ggaagcccgc
     2821 gtcgcgggtc aggttgtgaa tgccgaccag gttatacggg acgccgaggt ttacaggcgt
     2881 cattgagaag gttgaggtac tggcggcgat gatcagatcg gaactcatga tcatttcaaa
     2941 tgcgccaccc caaacactac cttccaccat cgaaatgatc ggtttcggga atttttggat
     3001 catgcgggtg atttgacgca atggatcatc ataggagagc ggatcgcgac cgccagacgg
     3061 cagttcgtga atatcgtgac ctgcggagaa gactttggat ccactcggcg cgcgcaaaat
     3121 gatacagcga atttccggcc ggttgagatc gcttaacgcc tgcataagat catcaataaa
     3181 gactttactt aaggcattaa gttttcggcc atagttaaac tcaatgaccg ccactttgtt
     3241 gatagtggca acgttcacat actgataaga cataaaaatt cctttaatca aaatattgcg
     3301 tctggataaa ttcactgagc tgccgcaggc cggtgcgcgg tgagagcgta ttgtttttga
     3361 ccgctaaaag cgtctggcgg taatagcgat cgaaatcttc attcgcgaac aggtgattca
     3421 gtacttcttc ttcggtctgc ttacgcagcc attccaccga ttgttgttgc cgcacttgtt
     3481 gtaaacgacc actggcagtt agcgcggttt tgaactcgat gatggcgtgc cagatctcat
     3541 cgattccacg tttttccagt gcgctacaag tcagaacccg tggctgccat tcgtcgtatt
     3601 tacgtcgcag aatatgcagg gcactctcgt acatatgccg ggcaatggcg acattggtat
     3661 ggttatcgcc atcgtctttg ttgataacga tcagatcagc cacttccatc agcccttttt
     3721 taatgccctg cagatcatcg ccgccaccgg caatttgcaa cgagataaaa cagtccacca
     3781 tgcgggcgac ttctgtttcc gactgcccga cgccaaccgt ttcgacaatc actacgtcat
     3841 aacccgccgc ttcgcataac agcattaatt cccgcgctcg ctgactggca ccgcccagat
     3901 gaccggagga tggtaccggg cgaataaacg ccgcttcggc acgcgccagg tcattcatgc
     3961 ggattttatc cccgagaatg ctaccgccag tgaccgggct gctgggatcg accgcaataa
     4021 ccgcgacctt taatccctct cgaatcaaca acatgccaaa ggcctcaaga aaggtacttt
     4081 tccccgcgct gggggtgccg gtaacgccca gtcgcagggt gttaccgcag tacggcataa
     4141 tggcatcaag cagctgcgta cttagtgcct gatgacgcgg gtgacggctt tccaccagcg
     4201 tcatggcctg ggcgagtgtg gcacgctcac cctgacgtaa gcggcgaata ctttctgcca
     4261 gcgtggcttc attaatcatg atgctggctt atcagattca gtacgtcgcg cacactgtcg
     4321 agcataggtg tacctggacc ataaatcgcc gccacgccgc gctcttgcag gaaggcgtaa
     4381 tcctgcggtg gaatgacgcc accggcgact acgcagatat cttcgcgtcc ccattttttc
     4441 agcgcctcga ccagttccgg gatcagcgtt ttatgaccgg cagccagtga ggatgcgccc
     4501 actacgtgaa cgtcattttc tactgccagg cgggcgatct cttcaggtgt agagaacatc
     4561 gggcttaaat ctacgtcgaa accgagatcg gaataggcgc tggcgatcac tttcgagccg
     4621 cgatcgtgcc catcctggcc cattttggcg atcagaatgc gcaggcgacg accattgtcg
     4681 gcaaggaact gctccgtttg cgcaacaatg gcatcgaact cggaggccga tttctcagat
     4741 tgatgatagc tttgcgcaat cacgccggta acacacaggc ttggcaccag ataacggtcg
     4801 aaagcggctt ccagcgcatc ggaaatttca cccagggtgg cgcgaacgcg agcggcatta
     4861 acagcggcag ccagcaggtt ttcgttatgc tgtgcggcgt gagtcagggc gttcaacgcg
     4921 gcggttacgg cggcatcatc acgggtggcg cgaatgcgtt ccagcgaagc aatttgctcg
     4981 ttacgcacca tcacgttgtc gatctcaagt acatcggttt cgtcttcgtg atccagtttg
     5041 tacttgttga caccaacgat gacacgtttg ccctggtcga taagcgactg ttcgcgcgct
     5101 gaggcctatt cgatcattcg ttttggcaga cctgcttcga tcgctttcgc cataccaccg
     5161 gcttcgtcga tctgttggat aatagctctg gcttgtttga cgatttgatc ggtcagcgac
     5221 tcaatgtaat aggatccggc cagtggatcg acggtgcggc agagttctga ttcttcctgg
     5281 atgatgatct gggtgttgcg ggcaatgcgt gctgagaaat cggtaggcaa accaagcgct
     5341 tcgtcaaagg cgttggtatg cagtgactga gtaccgccca gcgtcgcagc cagtgcttca
     5401 atggtggtgc ggataacgtt gttatacgga tcctgttcag tcaggctcca gcctgaggtc
     5461 tggcagtggg tacgcagcgc cagtgatttc gggtcctgtg cgccaaatcc actgaccgct
     5521 tcgctccata aataacgtgc cgcacgcaac atggcgacgt tcataaacag atccatgccg
     5581 atgccgaaga agaacgacag gcgaggagcg aagtcatcaa ttttcagtcc ggcagagatt
     5641 gctgctttga tgtactcaat cccatcagcg agcgtaaatg ctacctgctg cacgcagttg
     5701 gcacccgctt cacccatgtg gtaaccgctg atactgatgg tattaaatcg cggcatgttg
     5761 ccggaacacc aggcgatgat gtcggcgata atgcgcattg acggttttgg cgggtaaata
     5821 taggtgttgc ggcagaggta ctctttgagg atatcgttct gaatggtgcc ggtcagttta
     5881 tcaggtgtaa caccttgctc ttccgcggcg acgatataaa acgccagtac tggtagcact
     5941 gcgccattca tggtcatcga aaccgacatt ttatccagcg ggatctggtc gaacaggact
     6001 ttcatatctt ccacggtgtc gatagcgacg cccgctttgc cgacgtcgcc cgccacgcgc
     6061 gggttatcgg agtcgtagcc tcggtgggtg gcaaggtcaa acgcaacgga aagacctttt
     6121 tgcccggcgg ccaggttacg gcgataaaaa gcgttggact cttttgctgt tgaaaaacca
     6181 gcatactgac ggatggtcca cggttgggcg gtatacatag tggcacgcgg gccacgaacg
     6241 tagggcggca aaccaggaag ggtacctgtc acctccagat tatcgagatc ggcttcggta
     6301 tacagcggct tgatggtgat cccttccgcg gtttgctgaa ccagcgagtc gacagttttc
     6361 tcccgacggc tcaattcctt gttggcaagc tgttgccact cctgcacgtt agacattatt
     6421 tgctccgtaa aacgcaatca aaatgagggt atttgcgcct acggtgagct ttttacgtgg
     6481 gtttgtcgcc agcaaaaaaa atgcattcag acgtcgtttt ttgccgcctg agatttgtct
     6541 attttgtgat gtgattcaag gaatacaaaa agaagtgagg acaacgcctg atatgtgcta
     6601 tcaggcatta tttgatggat taatcctgac gaaggacttt gtgaccataa tcgagcaacg
     6661 catcagtgac tttacgcatc atgcggcttt caggagcaaa gcggtgccag tagagcatcc
     6721 ggcgttgaaa tagccctggc gttaagtcaa tcagttcacc gctggctagt tctttctcga
     6781 tttgcaggtg cgggatcata cagcaggtgg tgccctggcg agcaagttgc acgaacgctt
     6841 ctgaagaatt aacgatatgg cagggcacgc tgcctggagg cagatcgaag ttttgctgca
     6901 aaaaggcctg gtgcatatcg tcaagatggt caaaggcgac cacaggtgct ttcaataatg
     6961 ccgaacgcgt tacgccgtta gggaaatatt tttcggcaaa cggttttgag ctgacgaaca
     7021 gatagtcaag cgcaccgagc ttatcgacaa ggcaactcgg cagcgcctga tgttgaatac
     7081 tcaccgcgcc gaccacttcg ccgcggcgca gacgttcctg agtacgggtt tcatcttcta
     7141 cctgcaagtt gaggcggata ggcgaatcag ccaatacagg agccagtgcc ggaagcaacc
     7201 acgtcgccag actgtcggcg ttgaccgcca gtgaaagcag cagcggagtc gaaccggttt
     7261 gttcatcgcc cagccactct tcttccagca actccacctg gcgcagcagt gccagcagtt
     7321 tttgcccttg ttccgtcggg cgcggcggta cggtacgcac caacagcggc tgcccgaaca
     7381 tattttccag ttgcttaatg cgctgtgaga cggctgattg tgtaatgcac agcttttgtg
     7441 ccgcgcgctc aaatcctcgt tcacgtatca ccgcatccag tgcctgtaat gttctgtagt
     7501 ccgggcgttt cattgctgtt gtctgctcct ggtaaatgct ttttcctgca ctatgacaca
     7561 attttgtgtc aggttgcata taccgcagcc gtcggcgggt aacatttgta tcaatggtta
     7621 aacgcgcagc ttaaaagatc agggatttgc gctattgcat ttcgcttagc gacttcgcgc
     7681 cctggttatg ttgaatggcg tggcgttatt gcctctgttc gcaccgtgga gcggcatacc
     7741 cagaccgttg tatgctttat ttgcggggcg aaaggggatg cccgccattg cgcgatattt
     7801 tatggatgag ttaaccaccc ggcttgccaa cggggtctga atcgcttttt ttgtatataa
     7861 tgcgtgtgaa atttcatacc acaggcgaaa cgatcatgac gcaggatgaa ttgaaaaaag
     7921 cagtaggatg ggcggcactt cagtatgttc agcccggcac cattgttggt gtaggtacag
     7981 gttccaccgc cgcacacttt attgacgcgc tcggcacgat gaaaggccag attgaagggg
     8041 ccgtttccag ttcagatgct tccactgaaa aactgaaaag cctcggcatt cacgtttttg
     8101 atctcaacga agtcgacagc cttggcatct acgttgatgg cgcagatgaa atcaacggcc
     8161 acatgcaaat gatcaaaggc ggcggcgcgg cgctgacccg tgaaaaaatc attgcttcgg
     8221 ttgcggaaaa atttatctgt attgccgacg cctccaagca ggttgatatt ctgggtaaat
     8281 tcccgctgcc agtagaagtt atcccgatgg cacgtagtgc agtggcgcgc cagctggtga
     8341 aactgggcgg tcgtccggaa taccgtcagg gcgtggtgac cgataatggc aacgtgatcc
     8401 tcgacgtcca cggcatggaa atccttgacc cgatagcgat ggaaaacgcc ataaatgcga
     8461 ttcctggcgt ggtgactgtt ggcttgtttg ctaaccgtgg cgcggacgtt gcgctgattg
     8521 gcacacctga cggtgtcaaa accattgtga aatgatctga cgggggaacc tcccccgtta
     8581 aaaaaattct cttcattaaa tttggtgaca tgtgtcacgt ttttacctgg ctattgtcga
     8641 ttgctctaaa taaatcctct aaaccagcat attcaaccaa gaaatacctt tgcgtgatat
     8701 ttcctcaaca tcgcgacgca aacgttcata ttgccgcaat attatttttt gatatgttga
     8761 aaggcggatg caaatccgca cacaacattt caaagacagg attgggtaaa tggcaaaggt
     8821 atcgctggag aaagacaaga ttaagtttct gctggtagaa ggcgtgcacc aaaaggcgct
     8881 ggaaagcctt cgtgcagctg gttacaccaa catcgaattt cacaaaggcg cgctggatga
     8941 tgaacaatta aaagaatcca tccgcgatgc ccacttcatc ggcctgcgat cccgtaccca
     9001 tctgactgaa gacgtgatca acgccgcaga aaagctggtc gctattggct gtttctgtat
     9061 aggaacaaac caggttgatc tggatgcggc ggcaaagcgc gggatcccgg tatttaacgc
     9121 accgttctca aatacgcgct ctgttgcgga gctggtgatt ggcgaactgc tgctgctatt
     9181 gcgcggcgtg ccggaagcca atgctaaagc gcaccgtggc gtgtggaaca aactggcggc
     9241 gggttctttt gaagcgcgcg gcaaaaagct gggtatcatc ggctacggtc atattggtac
     9301 gcaattgggc attctggctg aatcgctggg aatgtatgtt tacttttatg atattgaaaa
     9361 taaactgccg ctgggcaacg ccactcaggt acagcatctt tctgacctgc tgaatatgag
     9421 cgatgtggtg agtctgcatg taccagagaa tccgtccacc aaaaatatga tgggcgcgaa
     9481 agaaatttca ctaatgaagc ccggctcgct gctgattaat gcttcgcgcg gtactgtggt
     9541 ggatattccg gcgctgtgtg atgcgctggc gagcaaacat ctggcggggg cggcaatcga
     9601 cgtattcccg acggaaccgg cgaccaatag cgatccattt acctctccac tgtgtgaatt
     9661 cgacaacgta cttctgacgc cacacattgg cggttcgact caggaagcgc aggagaatat
     9721 cggcctggaa gttgcgggta aattgatcaa gtattctgac aatggctcaa cgctctctgc
     9781 ggtgaacttc ccggaagtct cgctgccact gcatggtggt cgtcgtctga tgcacatcca
     9841 cgaaaaccgt ccgggcgtgc taactgcgct gaacaaaatc ttcgccgagc agggcgtcaa
     9901 catcgccgcg caatatctac aaacttccgc ccagatgggt tatgtagtta ttgatattga
     9961 agctgacgaa gacgttgccg aaaaagcgct gcaggcaatg aaagctattc cgggtaccat
    10021 tcgcgcccgt ctgctgtact aattcccctt ctctgaaaat taacgggcag gtcactgact
    10081 tgcccgtttt tttatccctt ctccacaccg ttgccgcgtt gcgcattcta ctttgcgagt
    10141 ctgctccaga aaataaatca aagtcagatc aatgcgttgt gtttatttaa tggggattta
    10201 cgatggcggg acagtatggg gctgtaacgg taaagccctc accgaagcga gggcttaaag
    10261 gagaagggtt atgatgcgac ttgtcatcat actgattgta ctgttactga taagtttcgg
    10321 agcttattaa cagtcagtct ctggggagga gtcatcctcc cttaccctta ctcactaaat
    10381 taggtcaaag aatcaacgat gtcaatcagg gcgatgcggg gtgcatcgcc ctgaaccgaa
    10441 ctttttgata gccacttcat cgcccacgtt tactgccgta atagatcctt tttcccaaaa
    10501 attatctctg ttttgcatgg ggtttttcga acacgctcga agaaaagatt taaaggtaga
    10561 tcaatgcgtt gtggttattt aaagagagct tacgatagct gggcagcatg gggctgtaac
    10621 ggtaaagccc tcaccgaagc gagggcttga aggagaaggg ttatgatgcg acttgccatc
    10681 atactgattg tactgttact cataagtttc ccagcttatt aacagtcagt cacaggggag
    10741 gagcaatcct cccttaccct tactcactaa attaggttaa agaatcaacg atgtcaatca
    10801 gggcgatgca ggtgtatcgc ccttaccact cccagacttt cgacggtgta accaccgcag
    10861 gaagagggat atcccactct tcaacgggga gtttttccac caactgacaa tcatgcgcat
    10921 aacccaccgg ttgcgtttta tagtgctgcc agttttgtaa ggtccgatca taaaaaccac
    10981 cgcccattcc caggcgctga ccgtactcat caaaggcgac cagcggtgtg atcagcacgt
    11041 ctaatcggga aaggggtagc acgtcacgca catccagttt tggctcatgg attttcaacc
    11101 tgttcatcac cagttcgctt tgcggatggt aattcaggaa cagcaaatta ccagcactaa
    11161 agggatgcaa aactggaaga tatacgcgct taccggcgcg ccagagttgt tctattagcg
    11221 gctgggtgtc gagttcacca tcaaaagaga ggaatacagc gaccgtatgc gccatcacca
    11281 ccgggggata agtcatcatc cgggtagcgg cttgttgacc catttcctgc tgttgttccg
    11341 gcgttaacgc acgacgacgt tgccgaatca ttttgcggat ttcttgtcgg gataatgtca
    11401 gtgggagttc tggtagttgc gtcatggctg gtgccagata agaagggaat ctccgagatg
    11461 ccgccgcagg ctgtaaccct tgaacccttg gttcaaggtg aatgtgtcgt cgcagtttta
    11521 aggcttctcg gacggaccga gcatgctcac caaccgcgga gcgccacatt cttgtggtat
    11581 gaaatatcgg ctcaggggac tggcccgctt gcgaacatct cagagaaatt ttgtcttcac
    11641 ggttactcta ccacagtaaa ccgaaaagtg tcattcaaag ttttggttag ttttttcggt
    11701 gatgcgacct tgttcaagta acgcttgttc tatggtctgc tgcagcatcc gaatacgctg
    11761 ttccatactt gccgcgtagt cacgagtctt cgctttttct tgcgctaact catagctgat
    11821 attcaatgcg gcaatgaaga ccaactgttc agtatttgtg actctagtgc gttctttcag
    11881 atcttgcaac cgttggttca gatcgtccgc tgcctgattc aacgcatccc tttggtcagg
    11941 cgggcagttc acacgcagtg aacggccaaa aatttggata tcgacgggtt gtgcagacat
    12001 gccaccttcc tgctgattga ctgcgctgcc ttcgtcttta gacccatggt ctgcgaaggg
    12061 gcgacactat agctaccctg atgagaagag acaagccctt ttctggtcca ccagggccca
    12121 aagtggtagc atatcatgaa tattcctccc tttgacgacg aatgcttatg tctatacaga
    12181 acgaaatgcc tggttacaac gaaatgaacc agtatctgaa ccaacaaggg acgggtctga
    12241 cccctgccga gatgcatggt ttaatcagtg ggatgatatg tggcggtaac gatgacagct
    12301 catggctgcc gctacttcac gacctgacga acgaaggcat ggctttcggt catgagctgg
    12361 cacaggcact gcgtaaaatg cactctgcca ccagcgatgc cctgcaggat gacggcttcc
    12421 tttttcagct ttatctgcct gatggcgatg atgtcagcgt tttcgatcgg gctgatgcat
    12481 tggcaggttg ggtcaatcac ttcctgcttg gtcttggcgt tacgcaaccg aagctggata
    12541 aagtgaccgg cgaaaccggt gaagctatcg acgatctgcg taacattgcg caactgggtt
    12601 acgacgaaga cgaagatcag gaagagcttg aaatgtcgct tgaagagatc atcgaatacg
    12661 ttcgtgttgc cgcgctgtta tgccacgaca cctttactca tccgcaaccg accgcgccag
    12721 aagtacaaaa accgactcta cactaaaaac aaaaaacgta aggagagtgt tatgagtgag
    12781 atatcccggc aagagtttca gcgtcgccgt caggccctgg tggagcaaat gcaacccggc
    12841 agcgccgcgc tgatttttgc tgcaccagaa gtaacacgta gcgccgacag cgaatacccc
    12901 tatcgtcaga acagtgactt ctggtacttc accggcttta acgaaccgga agcggtgctg
    12961 gtgctgatta aaagcgatga cactcataac cacagcgttc tgtttaaccg cgttcgcgac
    13021 ctgacggcgg agatctggtt tggccgtcgc ttaggccagg atgccgcgcc agagaaactg
    13081 ggcgttgacc gcgcactggc attcagcgaa atcaatcagc aactttatca actacttaac
    13141 ggcctggatg tggtttacca tgcccagggc gaatatgcat atgctgatga aatcatgaac
    13201 agtgcgctgg aaaaactgcg taaaggttcg cggcaaaatc tcaccgcacc ggcaacgatg
    13261 atcgactggc gtcctgttgt tcatgaaatg cgcctgttca aatcgccaga agagattgcc
    13321 gtactccgcc gcgcgggaga aatcaccgcc atggcacata cacgggcgat ggaaaaatgc
    13381 cgtccgggaa tgttcgagta ccatctggaa ggcgaaattc accacgaatt taaccgccac
    13441 ggtgcgcgct atccgtccta taacaccatt gtcggcagcg gtgaaaacgg ctgcattctg
    13501 cactacaccg aaaacgagag tgaactgcgc gacggtgacc tggtgttgat tgacgcgggt
    13561 tgtgaataca aaggttacgc gggcgatatt acccgcacct tcccggtcaa cggcaaattc
    13621 acccaggccc agcgtgaaat ctacgacatt gtgctggagt ctctcgaaac cagcctgcgc
    13681 ctgtatcgtc cgggaacttc cattctggaa gtcactggtg aagtggtgcg catcatggtt
    13741 agcggcctgg taaaactcgg cattctgaaa ggtgatgttg atgaactgat cgctcagaat
    13801 gcccatcgtc ctttctttat gcatggcctt agccactggt tagggctaga tgtccatgac
    13861 gttggcgttt atggtcagga tcgctcgcgc attctggaac cgggcatggt actgaccgta
    13921 gagccagggc tgtatattgc gccggatgca gaagtgccag aacaatatcg cggtatcggc
    13981 attcgtattg aagacgacat tgtgattacc gaaaccggta acgaaaacct caccgccagc
    14041 gtggtgaaaa agccggaaga aatcgaagcg ttgatggctg ctgcgagaaa gcaatgagcg
    14101 taatcatcgt cggtggcggc atggcgggcg cgacgctggc gctggctatt tcccggttaa
    14161 gtcacggggc gctgccggta catttgattg aagcgactgc gccagagtca catgctcatc
    14221 cgggctttga tggacgagcg atagcgctgg cggcgggtac ctgtcagcaa ctggcgcgca
    14281 tcggcgtctg gcaatctctg gcggattgcg caactgccat caccaccgtg catgtcagcg
    14341 atcgtggtca cgctggattt gtcaccctcg ccgcagaaga ttaccaactg gcggcgctgg
    14401 gacaggttgt cgaattgcac aatgtcgggc aacggctgtt tgcattgctg cgtaaagcac
    14461 ctggcgtaac gctgcattgc cctgatcgcg tggctaacgt tgcccgtact cagagtcacg
    14521 ttgaagtgac gctggagagt ggcgagacgc tgacgggccg cgtgctggta gcagctgatg
    14581 gcacccattc agcgttagcc accgcgtgcg gcgttgactg gcagcaggag ccttacgaac
    14641 aactggccgt gattgccaac gttgcgactt ccgttgcgca cgaaggccgc gcttttgaac
    14701 gcttcacgca acatggcccg ctggcgatgt tgccgatgtc tgacggacgc tgttcgctgg
    14761 tctggtgtca tccactggaa cggcgcgaag aggtgctgtc gtggagcgac gagaagtttt
    14821 gccgtgaact ccagtcggcc tttggctggc gacttggaaa aattacccac gccggtaaac
    14881 gcagtgctta tccgctggcg ttaacccgcg ccgccagagc tattacccat cgtaccgtgc
    14941 tggtgggcaa tgcggcgcaa actctgcacc cgattgccgg gcaagggttt aacctcggta
    15001 tgcgagatgt catgagcctt gcggaaaccc tgactcaggc gcatgagcgc ggagaagaca
    15061 tcggtgatta cggcatattg tgccgctatc agcagcgtcg acagagcgat cgcgaagcaa
    15121 ccatcggcgt cacggacagc ctggtacatc tttttgccaa ccgttgggca ccgctggttg
    15181 tcgggcgcaa catcggactg atgacgatgg aattattcac cccggcacgc gatgtgctgg
    15241 cgcagcgcac cctcggttgg gtggcgcgtt gaaggcggtt ttaaggaata aacaatgcaa
    15301 tgtgttgatg tagccattgt tggtggcggc atggtggggc tggcggttgc ctgcggctta
    15361 caggggagcg gcttacgcgt tgccgtactg gagcagcgcg taccggaacc tctggcggcg
    15421 gatgcaccac cacaactgcg cgtttcggct atcaatgccg ccagcgaaaa attactcacc
    15481 cgtcttggcg tctggcagga cattctctct cgtagggcca gttgttatca cggtatggaa
    15541 gtgtgggaca aagacagttt tggtcacatt tcgtttgacg atcaaagcat gggctatagc
    15601 catcttgggc atatcgttga aaactcagtg attcactacg cgctgtggaa caaagcgcag
    15661 cagtcgtcag atatcactct gttggccccc gcagaattac agcaggtcgc ctggggagaa
    15721 aatgaaactt tcctgacgct gaaagatggc agcatgttaa cggcgcgtct ggtgattggc
    15781 gcggacggtg ctaattcctg gttgcgcaac aaagcagata tttcgctgac tttctgggat
    15841 tatcagcatc acgcgctggt agcgaccatt cgcacggaag aaccgcatga tgcggtggcg
    15901 cggcaggttt tccatggcga aggcattctg gcctttttac cgcttagcga tccgcatctt
    15961 tgctcaattg tctggtcact gtcgccagag gaagcgcagc ggatgcagca ggcaagtgaa
    16021 gatgaattta atcgcgcgtt aaatatcgct tttgataatc gcctgggctt atgcaaggtt
    16081 gagagcgcgc gtcaggtgtt cccactgacg gggcgttatg cgcgccagtt tgccgcgcac
    16141 cgtctggtgc tagtgggcga cgccgcgcat accattcacc cgctggcggg gcagggagta
    16201 aatctcggct ttatggatgc tgcagagctg attgctgaac tgaaacggtt gcatcgtcag
    16261 gggaaagaca tcgggcagta catttacctg cgccggtatg agcgtagccg caagcacagt
    16321 gcggcgctga tgctggctgg tatgcaggga ttccgcgatc tgttttccgg taccaatccg
    16381 gcgaaaaaac tgctgcgtga tattggtttg aaactggccg acacgcttcc tggcgttaaa
    16441 ccacaactta tccgccaggc aatgggatta aacgatttgc ctgaatggct gcgttaaaaa
    16501 tttctcttct gctgtttatt tgatacccat cacactttca tctcccggtt ttttcgccgg
    16561 gagattttcc tcatttgaaa taaactaatt tcacctccgt tttcgcatta tattttctaa
    16621 tgtcattatt ttttgattta gtgttttttg acattttttt agctcttaat attgccttat
    16681 tcaaattagc tttctaatgg catcatcttt atatagaaac tggtgtgttt tttggttttt
    16741 tattctgtcg cgattttggc gttttttaac cataagctaa tgtgatgatc aattttacct
    16801 tatggttaac agtctgtttc ggtggtaagt tcaggcaaaa gagaacgatt gcgttgggga
    16861 ccgggagtgg ctccgatgct gggtttcgtg gtgataattt caccatgaaa agttgtcagc
    16921 cccgcttatt caatgaggac aagatggcac aacagactcc tttgtacgaa caacacacgc
    16981 tttgcggcgc tcgcatggtg gatttccacg gctggatgat gccgctgcat tacggttcgc
    17041 aaatcgacga acatcatgcg gtacgtaccg atgccggaat gtttgatgtg tcacatatga
    17101 ccatcgtcga tctccgcggc agccgcaccc gggagtttct gcgttatctg ctggcgaacg
    17161 atgtggcgaa gctcaccaaa agcggcaaag ccctttactc ggggatgttg aatgcctctg
    17221 gcggtgtgat agatgacctc atcgtctact actttactga agatttcttc cgcctcgttg
    17281 ttaactccgc cacccgcgaa aaagacctct cctggattac ccaacacgct gaacctttcg
    17341 gcatcgaaat taccgttcgt gatgaccttt ccatgattgc cgtgcaaggg ccgaatgcgc
    17401 aggcaaaagc tgccacactg tttaatgacg cccagcgtca ggcggtggaa gggatgaaac
    17461 cgttctttgg cgtgcaggcg ggcgatctgt ttattgccac cactggttat accggtgaag
    17521 cgggctatga aattgcgctg cccaatgaaa aagcggccga tttctggcgt gcgctggtgg
    17581 aagcgggtgt taagccatgt ggcttgggcg cgcgtgacac gctgcgtctg gaagcgggca
    17641 tgaatcttta tggtcaggag atggacgaaa ctatttctcc tttagccgcc aacatgggct
    17701 ggactatcgc ctgggaaccg gcagatcgtg actttatcgg tcgtgaagcc ctggaagtgc
    17761 agcgtgagca tggtacagaa aaactggttg gtctggtgat gaccgaaaaa ggcgtgctgc
    17821 gtaatgaact gccggtacgc tttaccgatg cgcagggcaa ccagcatgaa ggcattatca
    17881 ccagcggtac tttctccccg acgctgggtt acagcattgc gctggcgcgc gtgccggaag
    17941 gtattggcga aacggcgatt gtgcaaattc gcaaccgtga aatgccggtt aaagtgacaa
    18001 aacctgtttt tgtgcgtaac ggcaaagccg tcgcgtgatt tacttttttg gagattgatt
    18061 gatgagcaac gtaccagcag aactgaaata cagcaaagaa cacgaatggc tgcgtaaaga
    18121 agccgacggc acttacaccg ttggtattac cgaacatgct caggagctgt taggcgatat
    18181 ggtgtttgtt gacctgccgg aagtgggcgc aacggttagc gcgggcgatg actgcgcggt
    18241 tgccgaatca gtaaaagcgg cgtcagacat ttatgcgcca gtaagcggtg aaatcgtggc
    18301 ggtaaacgac gcactgagcg attccccgga actggtgaac agcgaaccgt atgcaggtgg
    18361 ctggatcttt aaaatcaaag ccagcgatga aagcgaactg gaatcactgc tggatgcgac
    18421 cgcatacgaa gcattgttag aagacgagta acggctttat tcctcttctg cgggagagga
    18481 tcagggtgag gaaaatttat gcctcaccct cactctcttc gtaaggagag aggttcacaa
    18541 ttcactgcac gtttcaggaa ccatcgctca tgacacagac gttaagccag cttgaaaaca
    18601 gcggcgcttt tattgaacgc catatcggac cggacgccgc gcaacagcaa gaaatgctga
    18661 atgccgttgg cgcacaatcg ttaaacgcgc tgaccggcca gattgtaccg aaagatattc
    18721 agcttgcgac cccgccgcag gttggcgcac cggcgaccga atacgccgca ctggcagaac
    18781 tcaaggctat tgccagtcgc aataaacgct tcacgtctta catcggcatg ggttacaccg
    18841 ccgtgcagct accgccggtt atcctgcgta acatgctgga aaatccgggc tggtataccg
    18901 cgtacactcc gtatcaacct gaagtctccc agggccgcct tgaagcactg ctcaacttcc
    18961 agcaggtaac gctggatttg actggactgg atatggcctc tgcttctctt ctggacgagg
    19021 ccaccgctgc cgccgaagca atggcgatgg cgaaacgcgt cagcaaactg aaaaatgcca
    19081 accgcttctt cgtggcttcc gatgtgcatc cgcaaacgct ggatgtggtc cgtactcgtg
    19141 ccgaaacctt tggttttgaa gtgattgtcg atgacgcgca aaaagtgctc gaccatcagg
    19201 acgtcttcgg cgtgctgtta cagcaggtag gcactaccgg tgaaattcac gactacactg
    19261 cgcttattag cgaactgaaa tcacgcaaaa ttgtggtcag cgttgccgcc gatattatgg
    19321 cgctggtgct gttaactgcg ccgggtaaac agggcgcgga tattgttttt ggttcggcgc
    19381 aacgcttcgg cgtgccgatg ggctacggtg gcccacacgc ggcattcttt gcggcgaaag
    19441 atgaatacaa acgctcaatg ccgggccgta ttatcggtgt atcgaaagat gcagctggca
    19501 ataccgcgct gcgcatggcg atgcagactc gcgagcaaca tatccgccgt gagaaagcga
    19561 actccaacat ttgtacttcc caggtactgc tggcaaacat cgccagcctg tatgccgttt
    19621 atcacggccc ggttggcctg aaacgtatcg ctaaccgcat tcaccgtttg accgatatcc
    19681 tggcggcagg cctgcaacaa aaaggtctga agctgcgcca tgcgcactat ttcgacactc
    19741 tgtgtgtgga agtggccgac aaggcgggcg tactggcgcg tgccgaagcg gctgaaatca
    19801 acctgcgtag cgatatcctg aacgcggttg ggatcaccct tgatgaaacc accacgcgtg
    19861 aaaacgtaat gcagcttttc agcgtgctgc tgggcgataa ccacgggctg gagatcgaca
    19921 cgctggacaa agacgtggct cacgacagcc gctctattca gcctgcgatg ctgcgcgacg
    19981 acgaaatcct cactcatccg gtgtttaatc gctaccacag cgaaaccgaa atgatgcgct
    20041 atatgcactc gctggagcgt aaagatctgg cgctgaatca ggcgatgatc ccgctgggtt
    20101 cctgcaccat gaaactgaac gccgccgccg agatgatccc aatcacctgg ccggaatttg
    20161 ccgaactgca cccgttttgc ccgccggaac aggctgaagg ttatcagcag atgattgcgc
    20221 agctggctga ctggctggtg aaactgaccg gttacgacgc cgtttgtatg cagccgaact
    20281 ccggcgcaca gggcgaatac gcgggcctgc tggcgattcg tcattatcat gaaagccgca
    20341 acgaagggca tcgcgatatc tgcctgatcc cggcttctgc gcacggaact aaccccgctt
    20401 ctgcacatat ggcaggaatg caggtggtgg ttgtggcgtg tgataaaaac ggcaacatcg
    20461 atctgactga tctgcgcgcg aaagcggaac aggcgggcga taacctctcc tgtatcatgg
    20521 tgacttatcc ctctacccac ggcgtgtatg aagaaacgat ccgtgaagtg tgtgaagtcg
    20581 tgcatcagtt cggcggtcag gtttaccttg atggcgcgaa catgaacgcc caggttggca
    20641 tcacctcgcc gggctttatt ggcgcggacg tttcgcacct caacctgcat aaaactttct
    20701 gcattccgca cggcggtggt ggtccgggta tgggaccgat cggtgtgaaa gcgcatctgg
    20761 caccgtttgt accgggtcat agcgtggtgc aaatcgaagg catgttaacc cgtcagggcg
    20821 cagtttctgc ggcaccgttc ggtagcgcct ctatcctgcc aatcagctgg atgtacatcc
    20881 gcatgatggg cgcagaaggg ctgaaaaaag caagccaggt ggcaatcctc aacgccaact
    20941 atattgccag ccgcctgcag gatgccttcc cggtgctgta taccggtcgc gacggtcgcg
    21001 tggcgcacga atgtattctc gatattcgcc cgctgaaaga agaaaccagc atcagcgagc
    21061 tggatattgc caagcgcctg atcgactacg gtttccacgc gccgacgatg tcgttcccgg
    21121 tggcgggtac gctgatggtt gaaccgactg aatctgaaag caaagtggaa ctggatcgct
    21181 ttatcgacgc gatgctggct atccgcgcag aaattgacca ggtgaaagcc ggtgtctggc
    21241 cgctggaaga taacccgctg gtgaacgcgc cgcacattca gagcgaactg gtcgccgagt
    21301 gggcgcatcc gtacagccat gaagttgcgg tattcccggc aggcgtggca gacaaatact
    21361 ggccgacggt gaaacgtctg gatgatgttt acggcgaccg taacctgttc tgctcctgcg
    21421 taccgattag cgaataccag taattcactg attcgactat tttctaaagg cgcttcggcg
    21481 cctttttagt cagatgacaa agtacaaaag tgctcagaca gtcccctcgc ccctttgggg
    21541 agagggttag ggtgagggga acaggccggc actggcgcga atatttaccc tcaccccggc
    21601 cctctccctg aaagggcgag gggaaaagcg tgccaacatt gaagattgag ccagtttgtt
    21661 agcaatctca aagatacgtc aacgaattaa tttttctcgg aaaaacaaat ggctatagca
    21721 cttgtgaccg gtggcagtcg cggcatcggg cgggcaactg cattactgtt ggcgaaagaa
    21781 gagtatacgg tggcggttaa ttatcaacaa aacctccatg cggcgcagga agtggtgaac
    21841 ttaatcacgc aagccggtgg caaggcattc gtgctccagg cggatatcag cgacgaaaat
    21901 caggtcatcg caatgtttac agcaatcgat cagcacgatg aaccgctagc agcgctggtc
    21961 aataacgccg ggatcttgtt tacccagtgc accgttgaaa accttaccgc agagcgaatc
    22021 aaccgagtac tttccaccaa cgtgacggga tattttctct gctgccgcga ggcggtaaaa
    22081 cgcatggcgc ttaaaaatgg tggcagtggc ggcgctatcg tcaatgtctc ttcggtggcc
    22141 tcacggttgg gttcgccagg ggaataggtt gattacgcgg catcgaaagg ggcgattgat
    22201 acgttaacca ccggactatc gctggaagtc gccgcgcagg ggatccgcgt taactgcgtg
    22261 cggccagggt ttatttatac cgaaatgcac gccagcggcg gcgagcttgg acgcgtcgat
    22321 cgcgttaagt cgaacatccc catgcagcgt ggtggacagg cagaagaggt cgcgcaggcc
    22381 attgtctggc tactaagtga taaagcctct tacgtcacgg gaagttttat cgatttggcg
    22441 ggcgggaaat aaaacaggga agttgtctga ccggatgcaa caagtattgc atccggtact
    22501 tcatcgactt aaagcttctc gccgttgctg gcaatcacct ctttgtacca gttaaagctc
    22561 ttcttacgtg aacgcgacat atcgccagta ccgtcgtcat gtttattcac atagataaag
    22621 ccgtagcgtt tgctgtactg cccggtagtg aatgacacgc agtcgatgca gccccacggt
    22681 gtgtagccca tcagatccac accatcgtaa gtcactgctt ttttcatctc ttcaatatgg
    22741 gcgcgcaggt agtcaatgcg gtagtcgtcg ttgatgctgc catcttcttc cactttgtcg
    22801 taagcgccaa aaccgttttc gacaataaac agcggcctct gataacgctc atacagttcg
    22861 caaagggcat agcgcagacc tactggatca atctgccagc cccagtcaga cgctttaaca
    22921 tacgggttcg gtacgctgcc ttcaaaacca gagatcgcat cgccggtgcc gccttcggcc
    22981 ttcactgcgt tgatcatgta atagctgaaa ccaagataat cgcaggtgcc ttcacgcagt
    23041 acatccagat cgccatcttc cattttgatg ttaaatccgc gacgctccca ctcgttcaac
    23101 acataggacg ggtaatagcc gcgtagctgc acatcggtaa agacgtagcg ttcgcgcatc
    23161 gactcctgag cgaacatcac atcgtccggg ttacaggagt aaggatagag cggcaccatc
    23221 gccagcatac agccgacttt catctccggg ttaatgcgac gcgcggcttt cactgctagg
    23281 gcgctggcga caaactggtg atgcagcacc tggtacatcg tctcttccgg gttgtcatgc
    23341 tcggtataca ccacgccgga gcagcagtaa ccaaacagcg gcgcacgcca gttacgctgg
    23401 ttgtttattt cgttgaaggt catccagtat ttgactttat gcttgtagcg ttcgaatacc
    23461 acttccgcga aacggacaaa gaaatcaacg actttacggt tggtccagct accgtattgc
    23521 tgcaccagat gcagcggtat ttcaaagtgg gagagggtta tcaccggttc gatgttgtat
    23581 ttcagcagtt catcgaacag agagtcgtaa aacttcagcc cttcttcgtt tggctgagct
    23641 tcatcacctt ttggaaaaat acgcgtccag gcgatggaag tccgaaaaca tttgaagccc
    23701 atttcggcaa atagcttgat gtcttccttg tagtgaccat aaaaatcaac ggcttcatgg
    23761 tttggatagt attttcctgg caagacttct ttggtgattt cgcgcggcac gccgtgtgcg
    23821 ccaccggtca gaacgtcaca aatgctcggt cctttgccgc ctttgttcca gccgccttcg
    23881 acctgatgag cggcaacggc gccaccccat aagaaatctt tcggtaaggt gagttttttc
    23941 actatcatag gctccagatg agtcaattct tacaggaaat agtaccatgc agccaaacga
    24001 catcactttt tctcaacgtt tccaggatga cattctggct gggcgtaaaa ccatcaccat
    24061 ccgcgacgag tctgaatcgc acttcaaaac gggtgatgtg cttcgtgtcg gacgttttga
    24121 agatgacgat tatttttgca cgattgaagt caccgcaacc tcaaccgtaa cgctggatac
    24181 gctgacggaa aaacatgcag agcaggaaaa tatgaccctg actgaactga taaaggtcat
    24241 tgccgacatc tatcccggtc agacacagtt ttatgtgatt gaatttaaat gtctttaaat
    24301 tgaactcacg cctgttagtt gaaatttctc atttaatttc atgattttta ggagattagt
    24361 ctcaaatcag aatttatttt agctaacagg tgttcactgg aactattctc agttacgctg
    24421 gagaggtata catgtgcgtg tacgtttctc cggagtaagt tatggttcag aagcccctca
    24481 ttaagcaggg atattcgctg gcagaggaaa ttgccaacag cgtcagtcac ggcattgggt
    24541 tggtgtttgg tatcgttggg ctggtgttgc tactggttca ggcggtggat ctcaatgcca
    24601 gcgccacagc gataaccagc tacagcctct atggcggcag tatgatcctg ctgttcctcg
    24661 cttcgacgct ctatcacgcc attcctcatc aacgggcaaa aatgtggctg aagaaatttg
    24721 accattgcgc tatttacctg ttgattgccg gaacctacac gccgtttttg ctggtggggc
    24781 tggattctcc gttagcgcgc gggttgatga ttgttatctg gagcctggca ttgctgggga
    24841 ttctgtttaa actgaccatc gcgcaccgat tcaaaatttt atctctggtg acctatctgg
    24901 cgatgggctg gctgtcgctg gtggtaattt atgaaatggc agttaagctc gcggcgggca
    24961 gcgttacctt actggcggta ggcggcgtgg tttattcgct cggagtgatt ttctatgtct
    25021 gcaaacgcat tccctacaat catgccatct ggcacggctt cgtgctcggc ggcagtatgt
    25081 gccactttct ggcgatctat ttgtatattg ggcaggcgta atgggtatgc ctttgtaggc
    25141 ctgataagac gcgccagcgt cgcatcaggc atcggagcgc aaccgccgga tgcggcgtga
    25201 acgccttatc cgatctacgg gcctcgtccc tgttgtgata aaggcatcaa atcccagaca
    25261 tgataagacg cgtcagcgtc gcatcaggcg ataaatgcct gatgcgatac agagatttac
    25321 tcttcgagtg aatacggcag cggctcgata tgcagtgtat tcgcatcgtc gcgtacgcgg
    25381 aagatgctgt ccggttccat atcgttattc atgacgacct gtaccacgac ctgaccatct
    25441 tccagtttta ccgcagccag caccgtaccg gtacgacgcc agttctcgcc cattttcagc
    25501 tctaagtctt caccagcttc cggcagtcgg ctggcgctac ctgccagcaa ccagagcgca
    25561 cgtttattgg caccacggaa ttttgctcgc gccaccatct cttgtccggt ataacagcct
    25621 ttcttaaaac tgataccgcc cagcgcctgg agattggtcg cctgtgggat aaactgcccg
    25681 ctgttcgcgg catcaatcac cgggaaaccc gcttcaatgt ttaatgccag ccactgttgg
    25741 ctattgttca gttccgcttc accgcgcagt ttatcggtca gcatattggc agtagcttca
    25801 tcggttacga tcaggaaacg ttctgccggg tgttcaaacc atagcaaagt ggtcgcgcct
    25861 tctttaacta cctgtttttc tctcgaaggt agttcactaa agagattggc gagcgcggcg
    25921 cgcgcctgaa aaccggcaac accaagcagc acacgctcgt cgtctgccgc gatggtcact
    25981 ttagagaaca ccgcatattt tttcagttca gtcagctgcg gttcacgcac gctgcgccgt
    26041 tcaatccacg caaagccatc gccgtcgcgg aacagacgta aattgctcca cattttacct
    26101 ttggcgtcgc aatgggcggc gagcaggtgc tgattttctg tcatctggct gacatctgct
    26161 gtcacctgac cctgcatata tttttcgctg tccgcgccag taatggtggc aagcgcccag
    26221 tcatcaagcg tcatcagcgt cagcggtaaa cgggcagaag ccgtaggctg acggggagga
    26281 aaaggtgtaa aagccataat agagtcctga gttgcttaac ggcgtattaa taactaatgg
    26341 taaaagagct atgaggcaat gcaagtgctt tcactacgcg atctgtgcct tctgcgaggc
    26401 gacttccaaa aaaatgaagc tcttgaattg ttgtgaatta atttcgcgat cgcgatggtg
    26461 tttactgata ttcccgtaaa agaagtcgaa aaacacgtta caatagccgg gtactggatt
    26521 ttcgtgagac aggaagaaga tggacattaa caacaaagcc cgcattcatt gggcatgccg
    26581 ccgtggtatg cgcgaactcg atatttcaat catgccgttt ttcgaacatg agtacgacag
    26641 cttaagcgat gacgaaaaac gcatctttat tcgtctgctg gaatgtgacg atccggacct
    26701 gtttaactgg ctgatgaatc acggtaaacc ggccgatgca gaactggaaa tgatggtccg
    26761 actcatccag acacggaacc gggaacgtgg tcctgtggca atctgatttg cgcgtctcct
    26821 ggcgcgcaca gtggctttcc ttgctgattc atgggctggt tgccgctgtt attttactca
    26881 tgccctggcc gctcagttac accccgttat ggatggtgtt actttcgctg gtggtatttg
    26941 attgcgttcg cagccagcgg cgtattaatg ctcgccaggg ggaaattcga ttgttgatgg
    27001 acggacgttt gcgttggcaa gggcaggagt ggagcatcgt caaagcaccg tggatgatta
    27061 agagcggcat gatgctgcgt ttacgttctg atggcggtaa acggcaacat ttatggctgg
    27121 cagccgacag catggacgaa gctgaatggc gggatttacg gcggattttg ttgcaacaag
    27181 agacgcaaag ataaatatga cggcaaagca tatgcgctaa gccgtcagtg agatcaggcg
    27241 taatgctctg ccatttcgtt gaggatttgc tcgcaccagc tctgaatacg ctcgtcgcta
    27301 aggtcatact ggttagtttc atccagcgcc agacccacga acagttgccc gtcagcaatc
    27361 accggtttcg ggctggtaaa ttcatatcct tccgttggcc agtagccgac gaacttcacg
    27421 cctttggtcg agagtttgtc atgcagcata ccgagcgcat cgaggaacca ctcgccgtat
    27481 cccagttgat cgccaagccc atacagcgca acaattttac cttcaaggtt caggtcgtcg
    27541 agctgatccc agacggcttc ccagtcttcc tggatttcgc caaaatccca ggtcgggata
    27601 cccagaatga gcacatcgta ctgctccatt aatttcgggg agtcgtcctt gaggttatgt
    27661 aaggtcacca gttctgggcc gataatatcg cggatttttt ctgccgccat ttcggtgtaa
    27721 caggtgctgg aaccgtaaaa aagacccata ttcataacgt aagcttctcg attctgctgt
    27781 ggcttttgcg gctagtgtat cagaatcgct ttagtcacgg cacaataagg cataatggat
    27841 caaatgagtg accataaggg gcgcaagtga aacaggatct ggcacgcatc gagcagtttc
    27901 ttgatgctct gtggctggaa aaaaatctgg ctgaaaatac gttgaacgct taccgtcgcg
    27961 atctgtcaat gatggtggag tggttgcatc accgcgggtt gacgctggcg acggcgcaaa
    28021 gtgacgattt gcaggcatta ctggcagaac ggctagaggg cgggtataaa gccaccagct
    28081 cagcgcgttt gctgagtgca gtgcgccgat tgttccagta tctttatcgc gaaaagtttc
    28141 gtgaagacga tcccagtgcg catctcgctt caccgaaatt gccacagcgt ttgccaaaag
    28201 atttaagcga agcgcaggtc gaacgtttat tacaggcacc attaattgat cagccactgg
    28261 agctacgcga taaagccatg cttgaagtgt tgtatgctac cgggctgcgt gtctctgaac
    28321 tggtcgggct gacaatgagt gatatcagcc tacgtcaggg cgtagtgcgg gtcattggta
    28381 aaggcaacaa agagcgcctg gtgccgttag gtgaagaggc cgtttactgg ctggaaacct
    28441 atctggaaca tgggcgtccg tggctgttga atggtgtgtc aattgacgtg ttgtttccca
    28501 gccagcgtgc gcagcagatg acgcgacaga ccttctggca ccgcattaaa cattatgccg
    28561 tgctggcggg tatcgacagc gaaaagctgt caccgcatgt gttgcgtcac gcttttgcca
    28621 ctcatttatt aaatcatggt gcggatttac gcgtggtgca gatgctactg ggccacagcg
    28681 atctctccac cacgcaaatt tatacgcatg tcgctaccga gcgtctgcgg caacttcatc
    28741 aacagcatca cccgcgggcg tgatgtctga aaagaacggg aagatttatg aagaaaggtt
    28801 ttatgttgtt tactttgtta gcggcgtttt caggctttgc tcaggctgat gacgcggcaa
    28861 ttcaacaaac gttagccaaa atgggcatta aaagcagcga tattcagcca gcacccgtgg
    28921 ctggcatgaa gactgtgctg actaacagcg gtgtgttgta catcaccgat gacggtaaac
    28981 atatcattca ggggccaatg tatgacgtta gtggcgcggc tccggtcaat gtcaccaata
    29041 aaatgctgct aaagcagttg aatgcgcttg aaaaagagat gatcgtttat aaagcgccgc
    29101 aggaaaaaca cgtcatcacc gtgtttactg atattacctg tgggtactgc cacaaactgc
    29161 atgagcaaat ggcagactac aacgcgctgg ggatcaccgt gcgttatctt gctttcccgc
    29221 gccaggggct ggagagccag gctgagcaac aaatgaaagc catctggtgt gcgaaagata
    29281 aaaacaaagc gtttgatgat gtgatggctg gtaaagctgc cactccggca agttgcgata
    29341 tcgatattgc cgatcattac gcacttggcg tccagcttgg cgttagcggc actccggcaa
    29401 ttgtgctgag caatggcaca cttgttccgg gttaccagcc gccgaaagag atgaaagaat
    29461 tcctcgacga acaccaaaaa atgaccagcg gtaattaatt cgcgtgaaac aacagataca
    29521 acttcgtcgc cgtgaagtcg atgaaacggc agacttgccc gctgaattgc ctcccttgct
    29581 gcgccgttta tacgccagcc ggggagtacg cagtgcgcaa gaactggaac gcagtgttaa
    29641 aggtatgttg ccctggcagc aactaagcgg tgtcgaaaag gccgttgaga tcctttacaa
    29701 cgcttttcgc gaaggaacgc ggattattgt ggtcggtgat ttcgacgccg acggcgcgac
    29761 cagcacggct ctaagcgtgc tggcgatgcg ctcgcttggt tgcagcaata tcgactacct
    29821 ggtaccaaac cgtttcgaag acggttacgg cttaagcccg gaagtggtcg atcaggccca
    29881 tgcccgtggc gcgcagttaa ttgtcacggt ggataacggt atttcctccc atgcgggggt
    29941 tgaacacgct cgctcgttgg gcattccggt tattgttacc gatcaccatt tgccaggcga
    30001 aacattaccc gcggcggaag cgatcattaa ccctaacttg cgcgactgta atttcccgtc
    30061 gaaatcactg gcaggcgtgg gtgtggcgtt ttatctgatg ctggcgctgc gcaccttttt
    30121 gcgcgatcag ggctggtttg atgagcgcgg catcgcaatt cctaacctgg cagaactgct
    30181 ggatctggtc gcgctgggga cagtggcgga cgtcgtgccg ctggacgcta ataatcgcat
    30241 tctgacctgg caggggatga gtcgcatccg tgccggaaag tgccgtccag ggattaaagc
    30301 gctgctggaa gtggcaaacc gtgatgcaca aaaactcgcc gccagcgatt taggttttgc
    30361 gctggggcca cgtctcaatg ctgccgggcg actggacgat atgtccgtcg gtgtggcgct
    30421 gttgctgtgc gacaacatcg gcgaagcgcg cgtgctggca aatgaactcg atgcgctaaa
    30481 tcagacgcga aaagagatcg aacaaggaat gcagattgaa gccttgaccc tgtgcgagaa
    30541 actggagcga agtcgcgaca cgctacccgg cgggctggca atgtatcacc ccgaatggca
    30601 tcagggcgtt gtcggtattc tggcttcgcg catcaaagag cgttttcacc gtccggttat
    30661 cgcctttgcg ccagcaggtg atggtacgct gaaaggttcc ggtcgctcca ttcaggggct
    30721 gcatatgcgt gatgcgctgg agcgattaga cacactctac cccggtatga tgctgaagtt
    30781 tggcggtcat gcgatggcgg cgggtttgtc gctggaagag gataaattcg aactctttca
    30841 acaacggttt ggcgagctgg ttaccgagtg gctggaccct tcgctattgc aaggcgaagt
    30901 ggtgtcagac ggcccgttaa gcccggccga aatgaccatg gaagtggcgc agctgctgcg
    30961 cgatgctggc ccgtgggggc agatgttccc ggagccgctg tttgatggtc atttccgtct
    31021 gctgcaacag cggctggtgg gcgaacgtca tttgaaagtc atggtcgaac cggtcggcgg
    31081 cggtccgctg ctggatggta ttgcttttaa tgtcgatacc gccctctggc cggataacgg
    31141 cgtgcgcgaa gtgcaactgg cttacaagct cgatatcaac gagtttcgcg gcaaccgcag
    31201 cctgcaaatt atcatcgaca atatctggcc aatttagcgt catcttctct ataaaaaaga
    31261 gcgtggattg ggtacaatcc cgctcttatc accgcatttt gactagctca ataaaagaaa
    31321 tcagaccatg tttgaaatta atccggtaaa taatcgcatt caggacctca cggaacgctc
    31381 cgacgttctt agggggtatc tttgactacg acgccaagaa agagcgtctg gaagaagtaa
    31441 acgccgagct ggaacagccg gatgtctgga acgaacccga acgcgcacag gcgctgggta
    31501 aagagcgttc ctccctcgaa gccgttgtcg acaccctcga ccaaatgaaa caggggctgg
    31561 aagatgtttc tggtctgctg gaactggctg tagaagctga cgacgaagaa acctttaacg
    31621 aagccgttgc tgaactcgac gccctggaag aaaaactggc gcagcttgag ttccgccgta
    31681 tgttctctgg cgaatatgac agcgccgact gctacctcga tattcaggcg gggtctggcg
    31741 gtacggaagc acaggactgg gcgagcatgc ttgagcgtat gtatttgcgc tgggcagaat
    31801 cgcgtggttt caaaactgaa atcatcgaag agtcggaagg tgaagtggcg ggtattaaat
    31861 ccgtgacgat caaaatctcc ggcgattacg cttacggctg gctgcgtaca gaaactggcg
    31921 ttcaccgcct ggtgcgtaag agcccgtttg actccggcgg tcgtcgccac acgtcgttca
    31981 gctccgcgtt tgtttatccg gaagttgatg atgatattga tatcgaaatc aacccggcgg
    32041 atctgcgcat tgacgtttat cgcgcgtccg gcgcgggcgg tcagcacgtt aaccgtaccg
    32101 aatctgcggt gcgtattacc cacatcccga ccgggatcgt gacccagtgc cagaacgacc
    32161 gttcccagca caagaataaa gaccaggcca tgaagcagat gaaagcgaag ctttatgaac
    32221 tggagatgca gaagaaaaat gctgagaaac aggcgatgga agataacaaa tccgacatcg
    32281 gctggggcag ccagattcgt tcttatgtcc ttgatgactc ccgcattaaa gatctgcgca
    32341 ccggggttga aacccgcaat acgcaggccg tgctggacgg cagcctggat caatttatcg
    32401 aagcaagttt gaaagcaggg ttatgaggaa ccaacatgtc tgaacaacac gcacagggcg
    32461 ctgacgcggt agtcgatctt aacaatgaac tgaaaacgcg tcgtgagaag ctggcgaacc
    32521 tgcgtgagca gggaattgcc ttcccgaacg atttccgtcg cgatcatacc tctgaccaat
    32581 tgcacgcaga attcgacggt aaagagaacg aagaactgga agcgctgaac atcgaagtcg
    32641 ccgttgctgg ccgcatgatg acccgccgta ttatgggtaa agcctctttt gttaccctgc
    32701 aggacgttgg cggtcgtatt cagctgtacg ttgcccgtga cgatcttccg gaaggcgttt
    32761 acaacgagca gttcaaaaaa tgggatctcg gcgacatcct cggcgcgaaa ggtaaactgt
    32821 tcaaaaccaa aaccggcgaa ctgtctatcc actgcaccga gctgcgtctg ctgaccaaag
    32881 cactgcgtcc gctgccggac aaattccacg gcttgcagga tcaggaagcg cgctatcgtc
    32941 agcgttatct ggatctcatc tctaacgatg aatcccgcaa cacctttaaa gtgcgttcgc
    33001 agatcctctc tggcattcgc cagttcatgg taaatcgcgg ctttatggaa gttgaaacgc
    33061 cgatgatgca ggtgatccca ggcggtgccg ctgcgcgtcc gtttatcacc catcataacg
    33121 cgctggatct tgacatgtac ctgcgtatcg cgccggaact gtacctcaag cgtctggtgg
    33181 tcggtggctt cgagcgtgta ttcgaaatca accgtaactt ccgtaacgaa ggtatttccg
    33241 tacgtcataa cccagagttc accatgatgg aactctatat ggcttacgca gattacaaag
    33301 atctgatcga gctgaccgaa tcgctgttcc gtactctggc acaggatatt ctcggtaaga
    33361 cggaagtcac ctacggcgac gtgacgctgg acttcggtaa accgttcgaa aaactgacca
    33421 tgcgtgaagc gatcaagaaa tatcgcccgg aaaccgacat ggcggatctg gacaacttcg
    33481 actctgcaaa agcgattgct gaatctatcg gcatccacgt tgagaagagc tggggtctgg
    33541 gccgtatcgt taccgagatc ttcgaagaag tggcagaagc acatctgatt cagccgacct
    33601 tcattactga atatccggca gaagtttctc cgctggcgcg tcgtaacgac attaacccgg
    33661 aaatcacaga ccgctttgag ttcttcatcg gtggtcgtga aatcggtaac ggctttagcg
    33721 agctgaatga cgcggaagat caggcgcagc gcttcctgga tcaggttgcc gcgaaagacg
    33781 caggtgacga cgaagcgatg ttctacgacg aagattacgt caccgcactg gaacacggct
    33841 taccgccgac agcaggtctg ggaattggta tcgaccgtat ggtaatgctg ttcaccaaca
    33901 gccataccat ccgcgacgtt attctgttcc cggcgatgcg tccagtaaaa taagcattac
    33961 gttatgctaa taaccccggc aaatgtcggg gttttttaat tgtgctgcgc gaaagcagac
    34021 aacaattttc ttgcttcact attggctgcc tgcattacca tccacggact gaacgcccac
    34081 ggcgtggcat caataccgtg taatacatct gctaaatcac accattgata atccatcact
    34141 tcatcatcgt tgatctgtaa cgcactgttg gtgcgtgcgg caaataccgg acacacttca
    34201 ttttccacaa tgccattcgg atcggtggcg cgatagcgaa agtcaggata gatagattca
    34261 ggaggcgtaa tttccacgcc aagctcataa cggcaacggc ggatcactgc gtcttcgttg
    34321 ctttctccca gttgtgggtg cccacaaacc gagttagtcc acacgccagg ccatgctttt
    34381 ttgctcagtg cgcggcgggt aactaataat tgccccttgg cattaaacag ccaactggag
    34441 aacgcgagat gtaagagggt gtctgccgtg tgtgcggcat acttttccag cgtacccgtg
    34501 ggaactccct gtgcattcaa taaaatgacg tgttccgttt gcataatttc tcacatgtaa
    34561 ttctgatcac tcatcattat agataattga agagtgaaat gattaaccaa gtgagcgttt
    34621 atcgacaacc gcccgttttg agcggatgcc gacaggtaaa aaccatttaa aaaagtagca
    34681 tcatatattt gaagcgactt tcaatggcca ttgcaacaca gtcagaaatg acaggaatag
    34741 agagagtaaa aagcaacagc agactgaata tagcgcgcat taaaagattt atattattct
    34801 ccatgctcat ttttcttcag cttgcgcatc agaagccaca tacgtactgt cctgactttt
    34861 aaatctttat cagagacgga ttccttcacc aggtcagcat gatgctgata gccattaaag
    34921 aagacgttca gcacaacggc gctaagggtt gcgagcataa tgccgctatg tagcagcggt
    34981 tgcagtacgg ccggtaactt agaaaagaaa tcgtgagaga gcgtcggagt catgccaacg
    35041 ccgagactga tcgccacaat atagaggttg taacggttgg tggtgtagtt acagcgcgac
    35101 agaattcgaa tccctgtcgc cagtaccatg ccgaacatca ctagaccagc gccgcccagc
    35161 acaaattgcg gaatggaggc taccagcacc gccatttttg gcaccatgcc aaacaggatt
    35221 aatataattc ccgaagaaat acacacccag cggctatgaa cgcgcgtcac gctaaccagg
    35281 ccaacgtttt gagaaaatga cgtgtggggg aagctgttaa acgtgccgcc tatcattgtc
    35341 cctacgccat cgacacgcag cccgcgaata atatcgtgtg aagagagttt acgaccgact
    35401 atttcaccca gtgccaggaa catccccatc gactcgataa acacgatgat taacacggca
    35461 gtcatggtca gaatggaaac gggatcgaaa atcggcatac caaacgacat cggggtgaca
    35521 atcgcaaacc acaaggcatc atgtagcccg gataaattga cttcattcat catccacgaa
    35581 agtaaaaagc caaatacaat ccccagtaat acggcgacgt tggacataaa tcctttcgca
    35641 tagcgagtaa tgagcaagat aaaaattaag acggcaaagg agatacctga ataaacggga
    35701 ttaccatatt gcggattccc tttacctccg gcggcccagt caatacccac ctgaatgatg
    35761 ctaagtccga cagaagtaat aaccacaccg gtaaccagtg gcgggaataa aggcatcaag
    35821 cgaccgataa gtggcgctaa taatgtggtg ataaaacccg cggcgatagt ggcaccaaat
    35881 atccccagca ggccaatatc cgggttcatc ccaatggcta tcattggtgt tacagcagca
    35941 aaggtcaccg acataatcac cggcaggcgg atccccataa agcggccgat accgatacat
    36001 tgcaataatg tgacgatccc gcagcaaaag agatccgagc taatgagcat cgcaatagct
    36061 tcttttgaga ggcccagtcg gtcaccaatc ataagaggaa cagcgactgc acctgcgtac
    36121 atgacaagga cgtgttgcag accgagtatg atcagctttc ctggtgataa tatgcggtca
    36181 acctcatcag ttgggcggtc ttgcccagaa gatgagagaa gttgggaatc tatggcgctc
    36241 atcagtgttt ctcctttcgc ccgccagagt aaaaagcaac cgtttacgtt aatgaaactg
    36301 tctaaacaca tgctcgtgga gtgccagttt ttgcgaggaa ggggagttag agacaggaat
    36361 tgcggaggca atcacataat cgtggttaaa ccacgaaaat gagaagagaa cctgacaatg
    36421 gaattatctg taattttctc atattgatat ttcattaatc attctggcat gtcgtactct
    36481 cgcatttaat cgtttttatc tggatagcac tcttttgatc ggcaatgttg aaataatgaa
    36541 agcggcatag attgaggggc aataatttga actcagtcgc aaaattataa ttaaaacggt
    36601 catgctacct aatatatgcc cgtt
//
LOCUS       DAJVUY010000021        36207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.021, whole genome shotgun sequence.
ACCESSION   DAJVUY010000021 DAJVUY010000000
VERSION     DAJVUY010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.021"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ72_000959"
                     /pseudo
     CDS             complement(50..1698)
                     /gene="actP"
                     /locus_tag="OQQ72_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
     gene            complement(1695..2009)
                     /locus_tag="OQQ72_000960"
     CDS             complement(1695..2009)
                     /locus_tag="OQQ72_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HCS2010771.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ72_000961"
                     /pseudo
     CDS             complement(2141..4100)
                     /gene="acs"
                     /locus_tag="OQQ72_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
     gene            4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ72_000962"
     CDS             4493..5929
                     /gene="nrfA"
                     /locus_tag="OQQ72_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HCS2010772.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ72_000963"
     CDS             5974..6540
                     /gene="nrfB"
                     /locus_tag="OQQ72_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HCS2010773.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ72_000964"
     CDS             6537..7208
                     /gene="nrfC"
                     /locus_tag="OQQ72_000964"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HCS2010774.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ72_000965"
     CDS             7205..8161
                     /gene="nrfD"
                     /locus_tag="OQQ72_000965"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HCS2010775.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ
                     LYMVVLVLWLAKIFEHDLLAQQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            8181..9899
                     /locus_tag="OQQ72_000966"
     CDS             8181..9899
                     /locus_tag="OQQ72_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS2010776.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQCALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEVRRQ
                     QMMEPSIRWNGIHDWYVVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ72_000967"
     CDS             9892..10275
                     /gene="nrfF"
                     /locus_tag="OQQ72_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HCS2010777.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ72_000968"
     CDS             10272..10868
                     /gene="nrfG"
                     /locus_tag="OQQ72_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HCS2010778.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ72_000969"
     CDS             11209..12522
                     /gene="gltP"
                     /locus_tag="OQQ72_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HCS2010779.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(12713..13401)
                     /locus_tag="OQQ72_000970"
                     /pseudo
     CDS             complement(12713..13401)
                     /locus_tag="OQQ72_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ72_000971"
     CDS             complement(13495..15642)
                     /gene="fdhF"
                     /locus_tag="OQQ72_000971"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(15223..15225),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HCS2010780.1"
                     /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK
                     GYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDA
                     IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA
                     INEIDNTDLVFVFGYNPADSHPIMANHVINAKRNGAKIIVCDPRKIETARIADMHIAL
                     KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSAS
                     EIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRG
                     QNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAH
                     GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGE
                     HEGVFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL
                     CPDFYGATYEKMGEQGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI
                     DKLTDEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEA
                     LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGSCNELVTENLSPITKTPEYKYCA
                     VRVEPIADQRAAEQYVIDEYNKLKTRLREAALA"
     gene            complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ72_000972"
     CDS             complement(15840..17306)
                     /gene="mdtP"
                     /locus_tag="OQQ72_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MdtP"
                     /protein_id="HCS2010781.1"
                     /translation="MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKL
                     ADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDA
                     GSQLQVAALGMLNRQRVSANGFLSPYAMDAPSLGMDGPYYTEATVGLFAGLDLDLWGV
                     HRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDMIDYAV
                     KAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPE
                     IKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAF
                     FGLDSIHLDTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVL
                     NAVRDVAVNGTRLQTLNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPV
                     LAEEMSLLMLDSRRVIHSIQLMKSLGGGYQAAPVVEKK"
     gene            complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ72_000973"
     CDS             complement(17303..19354)
                     /gene="mdtO"
                     /locus_tag="OQQ72_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter permease subunit
                     MdtO"
                     /protein_id="HCS2010782.1"
                     /translation="MSALNSLPLPVVRLLAFFHEELSERRPGRVPQIVQLWVGCLLVI
                     LISMTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGEP
                     LIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCI
                     VVGLYPTLLMTLIGVLWFPSRAISQMHQALNDRLDDAISHLTDSLAPLPETRIEREAL
                     ALQKLNVFCLADDANWRTQSAWWQSCVATVTYIYSTLNRYDPTSFADSQAIIEFRQKL
                     ASEINKLQHAVAEGQCWQSDWRISESEAVAARECNLENICQTLLQLGQMNPNTPPTPA
                     AKPPSMVADAFTNPDYIRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVG
                     SSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERS
                     SYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAVIYTFVWPESEART
                     LPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQRVALERQLD
                     SEERALLIERSQTVIRQGRDLLHAWDATWNSAQALDNALQPDRAGQFADALEKYAAGL
                     ATALSCSPQITLEETPASQAILPTLLKQEQHVCQLFARLPDWTAPALTPATEQAQGAT
                     Q"
     gene            complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ72_000974"
     CDS             complement(19354..20385)
                     /gene="mdtN"
                     /locus_tag="OQQ72_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter periplasmic adaptor
                     subunit MdtN"
                     /protein_id="HCS2010783.1"
                     /translation="MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYA
                     SADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQI
                     MLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTA
                     QRAAEADLNAVLLQAQSAASAVSGVDVLVAQRAAVEADIALTKLHLEMATVRAPFDGR
                     VISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKT
                     FEGKVDSIGYGVLPNDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGA
                     SAVANLEPQ"
     gene            complement(20404..20679)
                     /locus_tag="OQQ72_000975"
     CDS             complement(20404..20679)
                     /locus_tag="OQQ72_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010784.1"
                     /translation="MPTVLSRMAMQLKKTAWIIPVFMVSGCSLSPAIPVIGAYYPSWF
                     FCAIASLILTLITRRIIQRANINLAFVGIIYTALFAVYAMLFWLAFF"
     gene            complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ72_000976"
     CDS             complement(20888..22873)
                     /gene="yjcS"
                     /locus_tag="OQQ72_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase YjcS"
                     /protein_id="HCS2010785.1"
                     /translation="MNNSRLFRLSRIVIALTAASGMMVNTANAKEEAKAATQYTQQVN
                     QNYAKSLPFSDRQDFDDAQRGFIAPLLDEGILRDANGKPYYRGEDYKFDINAPAPETV
                     NPSLWRQSQLNGISGLFKVTDRMYQVRGQDISNITFIEGDTGIIVIDPLVTPPSAKAA
                     LDLYFQNRPQKPIVAVIYTHSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISE
                     NVLAGNIMSHRALYSYGLLLAHNPQGNIGNGLGVTLASGYPSIIAPNKTITKTGEKMI
                     IDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKTRDTSKWT
                     EYLNETLDMWGNDAEVLFMPHTWPVRGNKHINDYIGKYRDTIKYIHDQTLHLANQGYT
                     MNEIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMG
                     KRYVQALGGSARVISLAQEANKQGDYRWSAELLKQVIAANPGDQVAKNLQANNFEQLG
                     YQAESATWRGFYLTGAKELREGVHKFSHGTTGSPDTIRGMSVEMLFDFMSVRLDSAKA
                     AGKNISLNFNMSNGDNLNLTLNDSVLNYRKTLQPQADASFYISREDLHAVLTGQAKMA
                     DLVKAKKAKIIGNGAKLEEIIACLDNFDLWVNIVTPN"
     gene            23126..23443
                     /locus_tag="OQQ72_000977"
     CDS             23126..23443
                     /locus_tag="OQQ72_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HCS2010786.1"
                     /translation="MQPVFLFKKRTGAMGGHVAGTAGFCVAVPAFYSWSMSEVIDKDT
                     RSSERTDYPHYASEVALAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQ
                     RRN"
     gene            23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ72_000978"
     CDS             23512..23841
                     /gene="yjdP"
                     /locus_tag="OQQ72_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YjdP"
                     /protein_id="HCS2010787.1"
                     /translation="MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDR
                     GRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERR
                     MEDEYGR"
     gene            complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ72_000979"
     CDS             complement(23988..24746)
                     /gene="phnP"
                     /locus_tag="OQQ72_000979"
                     /EC_number="3.1.4.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism protein PhnP"
                     /protein_id="HCS2010788.1"
                     /translation="MSLTLTLTGTGGAQGVPAWGCECVACARARRSPQYRRQPCSGVV
                     KFNDAITLIDAGLHDLADRWPPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPP
                     DEQGCDDLFKHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETAHSRVA
                     WLSDTAGLPEKTLKFLRNNQPQVMVIDCSHPPREDAPRSHCDLNTVLALNQVIRSPRV
                     ILTHISHQFDAWLMENALPSGFEAGFDGMEIGVA"
     gene            complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ72_000980"
     CDS             complement(24748..25197)
                     /gene="phnO"
                     /locus_tag="OQQ72_000980"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoalkylphosphonate N-acetyltransferase"
                     /protein_id="HCS2010789.1"
                     /translation="MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFNANLRD
                     PSMRYPSMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQACGLNVGSKL
                     LAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL"
     gene            complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ72_000981"
     CDS             complement(25184..25741)
                     /gene="phnN"
                     /locus_tag="OQQ72_000981"
                     /EC_number="2.7.4.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 1,5-bisphosphokinase"
                     /protein_id="HCS2010790.1"
                     /translation="MMGKLIWLMGPSGSGKDSLLAELRLREQTQLLVAHRYITRDASA
                     GSENHIALSEREFFTRAGQNLLALSWHANGLYYGVGIEIDLWLHAGFDVVVNGSRAHL
                     PQARARYQSALLPVCLQVSPEILRQRLKNRGRENTSEINARLARAARYTPQDCHTLNN
                     DGSLRQSVDTLLTLIHQKEKHHACL"
     gene            complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ72_000982"
     CDS             complement(25741..26877)
                     /gene="phnM"
                     /locus_tag="OQQ72_000982"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HCS2010791.1"
                     /translation="MIINNVKLVLENEVVHGSLEVQDGEIRAFAESQSRLPEAMDGEG
                     GWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLNAVAIGDVR
                     DGGDQLENLEKMINTIEETQKRGVNRAEHRLHLRCELPHHTTLPLFEKLVQREPVTLV
                     SLMDHSPGQRQFANREKYREYYQGKYSLTDAQMQQYEEEQLALAARWSQPNRESIAAL
                     CRARQIALASHDDATHAHVAESHQLGSVIAEFTTTFEAAEASRKHGMNVLMGAPNIVR
                     GGSHSGNVAASELAQLGLLDILSSDYYPASLLDAAFRVADDESNRFTLPQAVRLVTKN
                     PAQALNLQDRGVIGEGKRADLVLAHRQGNHIHIDHVWRQGKRVF"
     gene            complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ72_000983"
     CDS             complement(26874..27554)
                     /gene="phnL"
                     /locus_tag="OQQ72_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnL"
                     /protein_id="HCS2010792.1"
                     /translation="MINVQNVSKTFILHQQNGVRLPVLQRASLTVNAGECVVLHGHSG
                     SGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVVEIRKTTVGWVSQFLRVI
                     PRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHLAPSTFSGGEQQRVNI
                     ARGFIVDYPILLLDEPTASLDAKNSAAVVELIHEAKARGAAIVGIFHDEAVRNDVADR
                     LHPMGASS"
     gene            complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ72_000984"
     CDS             complement(27665..28423)
                     /gene="phnK"
                     /locus_tag="OQQ72_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnK"
                     /protein_id="HCS2010793.1"
                     /translation="MNQPLLSVNNLTHLYAPGKGFSDVSFDLWPGEVLGIVGESGSGK
                     TTLLKSISARLTPQQGEIHYESRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSA
                     GGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNL
                     VTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLV
                     MKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN"
     gene            complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ72_000985"
     CDS             complement(28420..29265)
                     /gene="phnJ"
                     /locus_tag="OQQ72_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HCS2010794.1"
                     /translation="MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPM
                     PYGWGTGGIQLTASVIGESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDAT
                     LIQTRHRIPETPLTEDQIIIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYED
                     IARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPP
                     FTRVESLDFDDHPFTVQQWDEPCAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQS
                     EAKNQ"
     gene            complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ72_000986"
     CDS             complement(29258..30316)
                     /gene="phnI"
                     /locus_tag="OQQ72_000986"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate synthase subunit PhnI"
                     /protein_id="HCS2010795.1"
                     /translation="MYVAVKGGEKEIDAAHALQESRRRGNTDLPELSVAQIEQQLNLA
                     VDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPLDTTEMRLE
                     RRISAVYKDIPGGQLLGPTYDYTHRLLDFTLLANGEAPTLTTADSEQSPSPHVFSLLA
                     RQGLAKFEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRN
                     HPFAGEIRSGYIDVSIMPEELGFAVNVGELLMTECEMVNGFIDPPDEPPHFTRGYGLV
                     FGMSERKAMALVDRALQAPEYGEHATGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVD
                     FQAELELLKRLQQEQNHG"
     gene            complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ72_000987"
     CDS             complement(30316..30900)
                     /gene="phnH"
                     /locus_tag="OQQ72_000987"
                     /EC_number="2.7.8.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnH"
                     /protein_id="HCS2010796.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQSELATFAVTDEAIS
                     SEQLNALSSGTAVAPEAGATLILQVVSLSGGRMLRLTGAGIAEERMIAPQLPECILHE
                     LTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC"
     gene            complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ72_000988"
     CDS             complement(30897..31349)
                     /gene="phnG"
                     /locus_tag="OQQ72_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HCS2010797.1"
                     /translation="MHADIATRQHWMSMLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQPRMGGTGERFFAGDATLTRAAVRLTDGPLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ72_000989"
     CDS             complement(31350..32075)
                     /gene="phnF"
                     /locus_tag="OQQ72_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HCS2010798.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ72_000990"
     CDS             complement(32096..32875)
                     /gene="phnE"
                     /locus_tag="OQQ72_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HCS2010799.1"
                     /translation="MQTITIAPPKRSWFSLLSWAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ72_000991"
                     /pseudo
     CDS             complement(33001..34017)
                     /gene="phnD"
                     /locus_tag="OQQ72_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
     gene            complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ72_000992"
     CDS             complement(34042..34830)
                     /gene="phnC"
                     /locus_tag="OQQ72_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HCS2010800.1"
                     /translation="MQTIIRVEKLAKTFNQHQALHAVDLNIHHSEMVALLGPSGSGKS
                     TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLS
                     VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR
                     VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR
                     YCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRIEENAKAA"
     gene            complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ72_000993"
     CDS             complement(34963..35406)
                     /gene="yjdN"
                     /locus_tag="OQQ72_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HCS2010801.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ"
     gene            complement(35566..35901)
                     /locus_tag="OQQ72_000994"
     CDS             complement(35566..35901)
                     /locus_tag="OQQ72_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HCS2010802.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDTEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
BASE COUNT         7831 a         9709 c        10223 g         8444 t
ORIGIN      
        1 ctggagagga agagtattcc ccggtcaggc gaccggggaa ggggagagat taatgtgcgc
       61 ggccttgctc aacgccaaag ccggtctggg agcggataaa ctgcgcacgg aacagttcac
      121 gctcgcgcgc accttccgct gagttatcgg ttgccgagaa gaaccagatg ccgaggaatg
      181 ccacgctgat agagaacagc gccgggtatt catacgggaa gatggctttt tcgtgaccga
      241 ggatctgtac ccaaatagtc gggccgagga tcatcagcac cactgcggta atcaacccca
      301 gccagccgcc cagcatcgtg ccacgggtag tcagtttcga ccagtacatg gaaagcagaa
      361 tgatcgggaa gttacagctc gccgcgatgg caaacgcaag gcctaccata aaggcgatgt
      421 tctgattctc aaacagcatg ccgaggataa tcgcaatcac acccaaaatc aggacggtga
      481 ttttcgatac ccgcagttct tcacgttcgg tcgcaccttt tttgaagacg ttagcgtaca
      541 agtcatgcga aaccgcggat gcgcccgcca gcgtcagacc cgcaaccacc gcgaggatag
      601 tggcgaaagc aaccgctgaa ataaaaccga ggaacaggtt gccgcccact gcattcgcca
      661 ggtgaacggc cgccatgttg ttaccaccaa tcagatggcc cgccgcgtct ttatattccg
      721 gattcgcacc aaccagcatg atcgcgccga agccgataat aaaggtcaga atatagaagt
      781 agcccataaa cccggtggcg tagaacacgc tcttacgtgc ttcgcgggca tcgctgactg
      841 taaagaagcg catcagaatg tgcggcaagc ccgccgtacc aaacatcagt cccagaccca
      901 gagagagcgc ggagatcgga tctttcacca gcccgcccgg cttcatgatg tcgacacctt
      961 tcgggtgtac cgccatcgct tcgctgaaca gattattgaa gctaaagccg acgtgtttca
     1021 tcaccataaa ggccataaag ctggcaccga acagcaacag cacggcttta ataatttgca
     1081 cccaggtggt cgccagcatg ccgccgaaca ggacgtacat catcatcagc acgccgacca
     1141 gcaccaccgc aatgtgatag ttaaggccaa acagcagctc gatcagttta cctgcgccta
     1201 ccatctgggc gataaggtaa agcgccacca ccaccagaga accacaggcc gaaagaatac
     1261 gaatcggccc ttgtttcagg cggtaagagg ctacatcggc aaaggtgtag cgtcccaggt
     1321 tacgcagacg ttcggcaatc aggaacaaaa tgatcggcca gcccaccagg aagcccagcg
     1381 agtaaattaa gccgtcatag ccggaggtaa acaccagcgc ggagatcccc aaaaatgagg
     1441 cggcggacat atagtcaccg gcaatcgcca gcccgttctg gaagcctgtg atattgccgc
     1501 ctgccgtgta gtagtcgcta cgagaacgta cgcgttttga tgcccagtag gtaatgccga
     1561 gcgtaaacac gacgaaaatc aggaacataa taatcgcctg ccagttcgtt ggctggcgct
     1621 ctacggcccg ctaatagcat ccgcggcgtt agctgcgaaa gggagtgtgg cggcaagcgc
     1681 cgtcagaact cttttcatga tgcttgtacc tcatgcagga cttcattatt aagacggtcg
     1741 aattcgccgt tcgcccgcca gatgtagata ccggtgagaa caaaggagat cacaatcact
     1801 ccaacaccaa ttggaatacc gcgtgtgacg ctggtgttcg gattcagcgg cgtgcccagc
     1861 cagccgggcg cgaaggcgat cagtaaaata aagccgatat aaactgccag cataataatc
     1921 gacaggatgg tggcaaaccg ttgccgtttt tcgactaact ccctgaaatg cgcattgtct
     1981 tctatccgct gataaatagt gccattcatc acagattctc cagaggtaat gtagggattg
     2041 ttttaattcc cgctccctta tgggagaagg ttaacgctcg ggtaaccctt gccgaatgta
     2101 ggccggataa ggcgtttacg ccgcatccgg caattgtggg ttacgatggc atcgcgatag
     2161 cctgcttctc ttcaagcagc ttctcgacta cgccaggatc ggcaagcgtc gaggtatcgc
     2221 ccaggttgct ggtatcgccc gccgcaattt tgcgcagaat acggcgcata attttgccgg
     2281 agcgggtttt aggcagggag tcggtccagt gcagcacgtc tggcgtcgcc agcgggccaa
     2341 tctctttacg cacccagttg cggacttctg cgtacagttc tggtgacggt tcctccccgt
     2401 gattaagcgt gacgtaggcg tagatcgcct gacctttaat attgtgcgga atacctacta
     2461 cggcggcttc ggcaatcttc ggatgcgcca ccagcgccga ctcaatctct gccgtcccca
     2521 gacggtgacc ggagacgttc agcacgtcgt ccacacgccc ggtgatccag taatagccat
     2581 cttcatcgcg acgcgcgccg tcgccgctga aatacatatt tttgaaggtg gagaagtagg
     2641 tctgttcaaa acgttcgtga tcgccaaaca gcgtacgcgc ctgacccggc caggagtcgg
     2701 tgatcaccag gctgccttcg gtagcgcctt ccagcgggtt accttcgtta tcgaccagcg
     2761 ccggttgcac gccgaagaac ggacgtgttg ccgaaccggc tttcagcccg gtagcgccag
     2821 gcagtggcgt gatcatgaaa ccgccagttt cggtctgcca ccaggtatcg accaccggac
     2881 atttctcgtt gccgattttt ttccagtacc actcccacgc ttccgggtta attggctcgc
     2941 ccacggaacc gagaatgcgc agcgacgaac ggtcggtacc ctcgatcgct ttatcgcctt
     3001 ccgccatcag cgcgcggatc gccgtgggtg cggtatagag aatattgacc tgatgcttgt
     3061 ccaccacctg cgccatacgg gcaggcgtcg gccagttggg tacgccttca aacatcagcg
     3121 tggtcgcacc gcaggccagc gggccgtaca gcaagtaact gtgtccggtc acccagccca
     3181 catcggcggt gcaccagtag atatcacccg gatgataatc aaagacatat ttaaaggtca
     3241 gcgccgcgta caccagataa ccgccggtag tatgcagcac accttttggc ttaccggtag
     3301 aaccggaggt gtagagaata aacagcggat cttcggcgtt catctcttcc gcctggtgct
     3361 gatcgctcgc ttgctcaacc aggtcgtgcc accacaggtc gcgcccttcc tgccagtcaa
     3421 ttttcccgcc agtacgcttc agtaccacca catgctctac gctggtgacg ttcgggtttt
     3481 tcagcgcgtc atcaacgttt ttcttcagcg gaatactgcc gcccggcacg cacaccttcg
     3541 tcggaagtga tcaccagtcg tgagttggaa tcaataatgc gcccggcaac ggcttccggc
     3601 gagaagccgc cgaaaatcac cgaatgcacc gcgccaatgc gggcgcaggc cagcatcgca
     3661 accgcggctt ccggcaccat cggcatataa atcgccacca catcaccttt tttaatgccc
     3721 agctcgagca gggtattggc gaagcggcag acgtcgcggt gcagctcttt atagctgata
     3781 tgtttgctct ggctggcgtc gtcgccttcc cagatgatgg cggtacgatc gccgttttct
     3841 tgcagatggc ggtcaaggca gtttgccgcc agattcagcg tgccgtcctc gtaccattta
     3901 atggacacat taccgggggc aaaggaggtg tttttcacct tctggtaagg tttgatccag
     3961 tcaagaattt ttccctgttc gccccagaag gtatcaggta cgttaataga ttgttgatac
     4021 attgcctcgt actgctgagg gtttatcagg caacggtctg cgatgttggc aggaatggtg
     4081 tgtttgtgaa tttggctcat gcttttgttc tccttgtaga atgttaataa tatgtgacat
     4141 aagcgttaaa tgtaggggta ttggcagttt tgtttagtat ttgggcgaca gatcacgcaa
     4201 aagtagaatt gtgcaaataa acggcagggt aatttttgaa ggtcagcaac aaaagttgat
     4261 taattctttg aggaacatgc agttatgcat gctgttgaaa aagaggaaga tactgactaa
     4321 ctctaaagtg gtattttaca tgcacttaca attgattaaa gacaacattc acagtgtggt
     4381 tatttgttac acataggggc gagcaatgtc atgacagtgt aggtgcggtt actgtcgtga
     4441 aaaacaataa aaaccgccat tgcaacaatg gcgcaattcg gatgaagccc ctatgacaag
     4501 gataaaaata aacgcacgcc gtatcttcag cttattgatt ccttttttct ttttcacttc
     4561 tgttcacgct gaacaaacgg cagctcccgc aaaacctgta actgtggaag cgaagaatga
     4621 aacctttgcc ccgcagcatc ccgatcaata tctctcctgg aaagccacct cggaacagtc
     4681 agagcgtgtt gacgccctgg cggaagatcc acggctggtg atcctgtggg cggggtatcc
     4741 cttctcgcgc gattacaaca agccgcgtgg acatgccttt gctgtgaccg atgtgcgtga
     4801 aaccctgcgt accggtgcgc cgaaaaatgc tgaagatggt ccgctaccga tggcgtgctg
     4861 gagttgtaaa agcccggatg tggcgcgtct gatccagaaa gacggcgaag atggctactt
     4921 ccacggtaag tgggcgcgcg gcggcccgga aatcgtcaac aacttaggtt gtgccgactg
     4981 ccataacacc gcctcaccag agttcgccaa aggcaaaccg gagttaaccc tttcccgtcc
     5041 gtatgcggct cgcgcgatgg aagccattgg taaacctttt gagaaagccg gacgtttcga
     5101 ccagcaatcg atggtttgcg gtcagtgcca tgtggagtat tacttcgacg gcaaaaacaa
     5161 agcggttaaa ttcccgtggg atgacggcat gaaagtcgaa aatatggagc agtattacga
     5221 caaaattgcc ttctctgact ggactaactc cctgtcgaaa acgccaatgc tgaaagcgca
     5281 gcacccggaa tatgaaacct ggacagcggg cattcacggt aaaaacaacg tgacctgtat
     5341 cgactgccat atgccaaaag tgcagaacgc cgaaggcaaa ctctacaccg accataaaat
     5401 tggtaatccg tttgataact tcgcccagac ttgtgcgaac tgccataccc aggacaaagc
     5461 tgccttgcaa aaagtggtcg cggaacgtaa gcagtcgatt aacgacctga aaatcaaggt
     5521 tgaagatcaa ctggttcacg ctcacttcga agcgaaagca gcgctggatg caggcgcgac
     5581 ggaagctgaa atgaagccaa ttcaggacga tatccgtcat gcccagtggc gctgggatct
     5641 ggcgatcgct tcccacggca ttcatatgca cgcaccggaa gaaggtttac ggatgctcgg
     5701 tacggcgatg gataaagcgg cggatgcacg caccaaactg gcgcgcctgc tggcgaccaa
     5761 aggcatcacc catgaaatcc agatcccgga tatctcaacc aaagagaaag cccagcaggc
     5821 cattggcctg aacatggaac aaatcaaggc cgagaagcag gacttcatca aaacggtgat
     5881 cccgcagtgg gaagaacagg cacgtaaaaa cggtctgtta agccaataac cccgttccgc
     5941 ctcgcaaggg gcggaaaaca caatggagtg aatatgagcg tattacgttc gttattaact
     6001 gctggggtgc tggcgtcggg cctgttgtgg agcctgaacg gaattaccgc tacccctgcg
     6061 gcgcaggcat ctggtgatcg ctacgaagtt acccagcagc gtaacccgga tgccgcctgt
     6121 ctggactgtc ataaaccaga taccgaaggt atgcatggca aacatgcttc cgttatcaac
     6181 ccgaataaca aattgccggt cacctgcacc aactgtcacg gccagccatc accgcaacac
     6241 cgcgaagggg tgaaagatgt gatgcgcttt aacgagccga tgtacaaggt cggagagcag
     6301 aacagcgtct gtatgtcctg tcatctgccg gaacagttgc aaaaagcgtt ctggccgcac
     6361 gatgtccacg taaccaaagt ggcgtgcgcc agctgccatt ccctgcatcc acagcaagat
     6421 acgatgcaga cgttaagtga caaaggacgg attaagattt gcgtcgattg ccacagcgat
     6481 cagcgcacca atccgaactt taacccggcg tctgttccgt tgcttaagga gcagccatga
     6541 cctggtctcg tcgccagttt ctcaccggcg tcggcgtgct ggcagccgtc agcggcaccg
     6601 cagggcgcgt ggtggcgaaa acgttgaata tcaatggggt gcgttacggc atggtgcatg
     6661 acgagtcgtt atgcatcggc tgtaccgcct gtatggatgc ttgtcgagaa gtgaacaagg
     6721 tgccggaagg cgtctcgcgc ctgacgatta ttcgtagcga gccgcagggc gaatttcctg
     6781 atgtgaaata tcgcttcttc cgtaagtctt gccagcactg cgatcatgcg ccgtgcgttg
     6841 acgtctgccc gaccggtgcg tcttttcgtg atgccgctag cgggattgtc gatgttaatc
     6901 ctgatctctg cgtcggttgt cagtactgca tcgccgcctg tccgtaccgc gtgcgcttta
     6961 tccatccggt cacgaagacg gcggacaaat gcgatttctg ccgtaaaacc aatttgcagg
     7021 ccggtaagct gcccgcgtgc gttgaggctt gcccgacgaa ggcgctgacg tttggcaatc
     7081 tggacgatcc taacagtgag atttcgcaac tgctgcgcca gaagcctact taccgctaca
     7141 agctggcgct gggaaccaaa ccgaagctgt accgcgtacc gtttaaatac ggggaggtga
     7201 gccaatgacg cagacttccg catttcattt tgaatcgctg gtgtgggact ggccgattgc
     7261 catctacctg tttttgattg gtatttctgc cggtctggtg acgctggccg tgctgttacg
     7321 tcgcttctac ccgcaggcgg gcggtgcaga cagtacgttg ctgcgcacca cgctgattgt
     7381 cgggccgggc gcggtgatcc tcggtctgtt gatcctcgtc ttccacctga caagaccgtg
     7441 gaccttctgg aagctgatgt tccactacag ttttacctcg gtgatgtcga tgggggtgat
     7501 gctgtttcag ctttacatgg tggtgctggt gctgtggctg gcgaaaatct ttgaacatga
     7561 tttgcttgcc cagcaacaac gctggttgcc gaagctgggg atcgtgcaaa aggttctgag
     7621 cctgctgacg cccgttcatc gcggactgga aacgctgatg ctggtgttgg cggtgctgct
     7681 gggggcttat accggctttc tgctgtcggc gctgaaatcg tatccgttcc tcaataaccc
     7741 gatcctgccg gtgctgttcc tcttctccgg catctcgtcc ggtgcggcgg tggcgctgat
     7801 cgccatggcg atacgccaac gcagtaaccc gcattccacg gaagcgcact ttgttcaccg
     7861 gatggaaatc cccgtggtat ggggtgaaat cttcctgctg gtggcgtttt ttgtcggtct
     7921 ggcgctgggc gatgacggta aagttcgtgc gctggtggcg gcattaggtg gcggtttctg
     7981 gacgtggtgg ttctggcttg gtgtcgccgg gctggggctg attgtgccaa tgttgctcaa
     8041 atcgtgggtc aatcgcagtt ccggcattcc tgccgtgctg gcggcgtgtg gggccagtct
     8101 ggtcggcgtg ttgatgctgc gctttttcat tctctacgcc ggacagttga cggtggcgta
     8161 agccagaaaa gaggtggttt ctggacgtat tccttcctga agtcggtttt ctggcgttgt
     8221 tgttaagtct cggggtcaac gtgttgaccc cgttgacggc ctttgcggga gtgcggttgc
     8281 gctggcctgc catgatgcga ctcacttgca tcggcattct ggcgcagtgc gcgctcctgc
     8341 tgctcgcctt tggcgtactg acgtattgtt ttctcatcag cgatttctcg gtcatttatg
     8401 tcgcccaaca tagctacagc ctgctgtcgt gggaactcaa actggcggcg gtgtggggcg
     8461 gtcatgaagg ttcgctgctg ctttgggtgc tgctgctttc cgcctggagc gcgctgtttg
     8521 cctggcatta tcggcagcaa accgatccgc tatttccgct gacgctagcc gttttatctc
     8581 tcatgctcgc cgcactgcta ctgtttgtgg tgctgtggtc cgatcccttc gtgcggatat
     8641 ttccaccagc aatcgaaggc cgcgatctca atccgatgct gcaacatccc ggtcttatct
     8701 ttcatccacc gctgctttac cttggctatg gcggtttgat ggtagcggcg agcgtggcgc
     8761 tggcgagtct actgcgcggc gagtttgatg cggccagcgc ccgaatttgc tggcgctggg
     8821 cgttacctgg ctggagtgca ttaacggcgg ggatcatcct cggttcctgg tgggcctact
     8881 gcgaactcgg ctggggcggc tggtggttct gggatccggt ggaaaatgcc tctttattac
     8941 cctggctttc tgccactgcg ctgctgcaca gtttatccct gacacgccag cgggggattt
     9001 ttcgccactg gtcgctgtta ctggcgatag ttactctgat gctgtcgctg ctgggcacct
     9061 taattgtccg ttctggcatt ctggtttcgg ttcatgcgtt cgcgctggat aacgtccgcg
     9121 ccgtgccgtt gttcagcctg tttgcactga ttagccttgc gtctctggct ctgtatggct
     9181 ggcgagcgcg ggacggtggc ccggcggtgc gtttttcggg gttatcgcgg gaaatgttaa
     9241 tcctcgctac gctgttgctg ttttgcgcag tgctactgat cgtgctggtg ggaacgcttt
     9301 atccgatgat ttacggtctg ctgggctggg gacgcctctc cgttggcgcg ccgtatttta
     9361 accgcgcgac gttaccgttt ggtctgttga tgctggtggt gattgtgctg gcgacgtttg
     9421 tctctggcaa acgcgtgcag cttccggcgc tggtagctca tgcgggcgtg ctgttatttg
     9481 ccgctgggat cgtggtttcc agcgtcagcc gtcaggagat cagcctgaat ttacagccgg
     9541 gtcagcaggt gacgctggca ggatacacct tccgttttga gcgcctcgat ctgcaagcca
     9601 aaggcaatta caccagcgaa aaagcgatag tggcactgtt tgaccatcag caacgcattg
     9661 gtgaactgat gccggagcgg cgtttttacg aagtacgtcg tcagcaaatg atggaaccgt
     9721 caattcgctg gaacggcatc catgactggt atgtggtcat gggtgaaaaa accggagcgg
     9781 atcgttacgc ttttcgcttg tatgtacaaa gcggtgtgcg ctggatctgg gggggaggat
     9841 tgttgatgat tgcgggcgca ttgttaagcg gatggcgggg gaggaagcgc gatgaataaa
     9901 ggacttctca cgctactgct gttatttacc tgttttgcgc gcgctcaggt cgtagacacc
     9961 tggcaattcg ccaatccgca acaacagcaa caggcgttaa atattgccag ccagttacgt
    10021 tgtccgcagt gccagaatca aaacttactg gaatccaacg cgccggtggc agtcagtatg
    10081 cgccatcagg tttacagcat ggtggcggag gggaagaacg aagtcgaaat cattggctgg
    10141 atgaccgaac gctacggaga ttttgttcgc tataacccac cgttaacggg tcagacgctg
    10201 gtgttgtggg cgctgccagt ggtgttgtta ctgctgatgg cactgatcct ctggcgagtg
    10261 agggcgaagc gatgaaagag cccaaaatac cggtgaaaat gctgacaaca ctcacgattt
    10321 tgatggtatt tctctgtgtc ggcagttatc tgttaagtcc aaaatggcag gcggtacatg
    10381 cggaatatca gcgtcagcgc gatccgctac atcagtttgc cagccagcaa accccggaag
    10441 cgcagcttca ggcattgcag gataaaatcc gcgctaatcc acaaaacagc gaacaatggg
    10501 cgttactggg cgagtactat ctgtggcaaa acgattacag caattcgctg ctggcgtacc
    10561 gtcaggcgtt gcaactacgt ggtgagaacg ctgaactgta tgcggcgctg gcgacggtgc
    10621 tttattacca ggccagccag catatgaccg cccagactcg cgcaatgatc gacaaagccc
    10681 tcgcgctgga ctctaacgaa atcaccgctc tgatgctgct ggcttccgat gcgtttatgc
    10741 aggcgaatta cgcgcaagcc atcgaactat ggcaaaaagt gatggatctc aactcacccc
    10801 ggatcaaccg gacacagctg gtcgagtcga ttaatatggc gaaattgttg cagcggagat
    10861 cggattaatc atctggtgat gaagattatg ttattgagct gcataaaaaa taatcgaatg
    10921 aacatatgcc aaaaataatc actaatcagt attattgcag attaaacaaa taaaaatctt
    10981 tccataacaa atggttattc attaatcctg acataaactc gcgttattat gcattaatgc
    11041 agcgaaaagc tctgttgtta aagggttgcg caacataccg cgcaaatgat actgatcata
    11101 agcgttaaaa aaatctacaa accaacgcaa cacaattcat gcctggcagt atgtcacgtt
    11161 ctcgcgtttc tgaacgggga acggcgctcc attgaggaag ttattctgat gaaaaatata
    11221 aaattcagcc tggcctggca gattctgttt gctatggtgc tgggcattct cctgggaagc
    11281 tacctgcact accatagcga cagccgcgac tggctggtcg tcaatttgct ctctccggcg
    11341 ggtgatatct tcatccatct gattaaaatg attgttgtgc cgattgtgat ctccacgctg
    11401 gtggtgggta tcgcgggtgt gggtgatgcc aaacagctcg ggcgtattgg cgcgaaaacc
    11461 attatttact tcgaggtgat caccaccgtc gccatcattt tggggatcac tctggcgaac
    11521 gtcttccagc ccggtgccgg ggtggatatg tcgcagctgg cgaccgtcga tatctcgaaa
    11581 tatcagagca ctacggaagc ggtacaaagc agttcccacg gcattatggg cacgattttg
    11641 tcgctggtgc cgacgaacat tgtggcgtcg atggcgaaag gcgaaatgct gccgatcatc
    11701 ttcttctcgg tgctgtttgg tctggggctt tcctccctgc ccgcgacgca tcgtgaaccg
    11761 ctggtgaccg tgttccgctc catctctgaa accatgttta aagtgactca catggtgatg
    11821 cgttatgcac cggtgggtgt gtttgcgctg attgcggtga cggtggctaa ctttggtttc
    11881 tcttctctgt ggccactggc gaaactggtg ctgctggtgc atttcgccat tctgttcttc
    11941 gcgctggtag tgctgggaat tgtggcgcgc ctgtgcgggt taagcgtctg gatcctgatt
    12001 cgtattctga aagatgagct gattctggcg tactccactg ccagctctga aagcgtactg
    12061 ccgcgaatta ttgagaagat ggaagcctac ggagcaccgg cgtcgatcac cagcttcgtg
    12121 gtgccgaccg gttactcttt taaccttgat ggttcgacgc tgtatcaaag tattgccgct
    12181 attttcatcg ctcagctgta tggcattgac ctgtccatct ggcaggaaat cattctggtg
    12241 ctgacgctga tggtgacctc gaaggggatt gctggcgtgc cgggcgtgtc gtttgtggtg
    12301 ttgctggcaa cgctgggtag cgtaggtatt ccgctggaag gtctggcgtt tattgctggt
    12361 gttgaccgta tcctcgacat ggcgcgtact gcgctgaacg tggtgggtaa tgcgctggcg
    12421 gtgctggtga ttgccaagtg ggaacacaaa tttgaccgca aaaaggcgct ggcttatgag
    12481 cgtgaagtgc tgggcaaatt tgataaaact gcggatcaat aattgaagat tgccggggtt
    12541 atccacccgg caatgtgtgg atgcctgatg cgacgctggt gcgtcttatc aggcctacgc
    12601 cagacagcgc aatagcctga tttagcgtga ttttgtaggt cggataaggc gtttacgccg
    12661 catccgacat caacgcctga tgcgacgctt aacgcgtctt atcaggccta ccttaaccgt
    12721 tggttaattt ttcaaactct tcacacccgg tatcaaaccc ttccatacag ctcaggttca
    12781 accagtgcag cgccttttgt ttgttcttct cgataaaacc ttcttcaccg tttaagaaca
    12841 tcattcccgc ccagtactcg gaataaccgg ttcgggaaat tgcagagctg cgtttgaaat
    12901 actaggttgc cttgtcatcg tcggccttaa tacccacgcc gttggcgtaa atcaaaccaa
    12961 gcagcatttg ggcatcgacg gcagagtcgt tctccagatc ttccgaggct tttctaacag
    13021 cgaaatcgcc tttggataat ccggtttacc cgcttgagta tttaccagaa tatgcgccag
    13081 cgttacttca ccttctttac tgcccgcttg cgccgctttc tctgcaagaa cttttgcttg
    13141 tggatagtcc agactgcccg gattggtgat tttgatctgc gccaacagcg cgcaggcatc
    13201 agcatcaccg ctgtcggcgg ctttctgtgc ccaatattcg gctttgctca aatcgccgga
    13261 gctaaaccag ctgtcggcaa gaaaatattg tgcgcgtcgg tccccggcct ctgctgcctt
    13321 taaatactgg ctgccaggct cggagtcgtt ggcgtgggca aagaatgtca aaaacaacat
    13381 caatgcgata atttttttca ttttgataat acgattgggt agggagtaac cagtataaag
    13441 agttcgaatg gataaaaaaa cagcctccga aaggaggctg tagaaaggac tgtattacgc
    13501 cagtgccgct tcgcgcaggc gagttttcaa cttgttgtac tcgtcaatca cgtactgctc
    13561 ggcggcgcgc tgatcggcga tcggctcgac gcgcacggcg cagtatttgt attccggcgt
    13621 tttcgtaatc gggcttaagt tttcggtaac cagctcgtta caggaaccaa tccaccactg
    13681 gtaggtcatg taaatcgccc ctttgttcgg acgatcgctg acctgcgcac gggtgataat
    13741 tttgccttta cgcgagtgca cccaaaccaa tgcctcatct tcaataccca gacgtttggc
    13801 gtcttcggta ttgatttgtg cgtagccagg ttcatcagcc agcgccgcca gtgccgcaca
    13861 gttaccggtc atcgaacggc aagagtagtg accaacttca cgcaccgttg acagtaccat
    13921 cgggtactcg tcggtgagtt tgtcgattgg cgctacccag tcgcaggtga agaactgcgc
    13981 cagaccgttc ggggtatcaa acttctcttt aaacagataa gaagtcccct gatcggcatc
    14041 tgaagtatcg cggcaaggcc actgaatgaa gccctgttcg cccattttct cgtaagtcgc
    14101 accgtagaaa tccgggcaca gatgacgcaa ctcatcccag atctcctggg tgttgttgta
    14161 gtgcatcgga taacccatac gggtggcgat ttcactgatg atttgccagt ccgttttcag
    14221 atcccatttc ggttcaactg ctttgaagaa acgctggaag ccacggtcag ccgcagtaaa
    14281 cacgccttca tgctcgcccc acgacgttga cggcaaaatg acatccgccg ccgacgcggt
    14341 tttggtcata aagatgtcct gaacgatgac cagttccaga tcttcaaagg ctttacgtac
    14401 tgccgacagc tccgcatcag tttgcagcgg atcttcgccc ataatgtacg cggcacgcac
    14461 ttcgccatgc gctgcgcggt gcggcagctc gctgatgcga tagccggtat gagcaggcag
    14521 gctttccacg ccccaggctt tggcgaattt ctcgcggtta gccggatctt tcacgtactg
    14581 gtatcccgga tacgtatccg gcagcgcgcc catatcgcag gcaccctgca cgttgttctg
    14641 accacgaacc gggtttacac ccgcatgcgg cttaccgagg ttaccggtca gcatcgcgag
    14701 gctggtcaga gaacgcacgg tttccacgcc ctggtagaac tgggttacac ccatgcccca
    14761 caggatggcg gcgcttttcg cctgggcata catccgtgcc gcctgacgaa tctcactggc
    14821 gctgacgccg gtgatatctt caaccgactc cggcgtgtag ccttcaacga ttttacgata
    14881 ctcttcaaag ccttctgtac gggaagcgac gaacgctttg tcgtacagat tttcttcaat
    14941 aatgacatgg cccatcgcat tcaacagcgc gatgttcgag ccgtttttca gtgcaatgtg
    15001 catgtcagca atgcgcgcgg tttcaatttt gcgcggatcg cagacgataa ttttcgcccc
    15061 gttacgttta gcgttaatta cgtgattcgc catgattggg tgggaatccg ccgggttgta
    15121 cccgaaaacg aacactaaat cggtattatc aatttcgtta atagcattgc tcattgcgcc
    15181 attaccgacc gattggtgca gacctgcaac cgatgggccg tgtcagacac gagcgcagca
    15241 gtcaacgtta ttggtaccaa taacggcgcg cgcaaatttt tgcattacat agttggtttc
    15301 gttacccgta ccacgcgagg agccggtcgt ctggatggca tccggaccgt acttctcttt
    15361 gatggcgctc aggcgctcgg caacgtaatt cagtgcctca tcccaggaaa caggttcgag
    15421 tttgccgcca cgctggcgac ggatcatggg ggttttcagg cgcggggtca ggatctgggt
    15481 atcgttaatg aagtcccagc cataataacc cttcagacac agggtaccct ggttggtttt
    15541 cccctgcgct gcctccgccc ggacgatttt gccgttatcg acgaccaggt tgattttgca
    15601 acctgatgcg caataggggc aaaccgtgac gacttttttc atcggtctcg ctccagttaa
    15661 tcaaatcacg catacgcgct ctcgactaca gtatgcatct tttatgccac attttatttg
    15721 gggtcattcc ctgatattac gggcactatt tattcaaaac tctgacgaaa aacaggctgt
    15781 cgtcagtttt gacgtgacga aacgaaatac cgcgtgacag ccatcacgcg gcagacattt
    15841 tattttttct cgacgacggg agccgcctga tacccgccgc ccagcgattt catcaactga
    15901 atgctgtgga tcacccggcg gctgtccagc atcagtaatg acatctcttc ggcaagcact
    15961 ggcaaccggg cttcggtggc ctgtaagcgg ctggttaagc cgcgctgata ggcggcctcg
    16021 gcagcgcgct gggtgaagcg cgttgcttcc acgcgttcag cctgcatttc tcgttcgtcg
    16081 ttgagcgttt gcagacgcgt gccgttgacg gcaacgtcac gcaccgcgtt cagtactgac
    16141 tggttgtaac gttcaatcat catgttgctg gcggcgcgag tgccttcgag attggcattc
    16201 aaccgtccac cgtcaaacag cggcaatttc agacccggga tgaagttgaa ctggcgactg
    16261 gtttttttga ataaggtatc caggtggatg gagtccagac cgaaaaacgc tttgatatca
    16321 aagctcgggt agaacagtgc ccgcgcggaa tccacctgat ctaatgacgc ctgaacatac
    16381 cagcgcatgg cttgcagatc cgggcgtctg gcgagcaact cataagagag tgtcgccgga
    16441 atgccggtct ggactcgtgg taatgccacc ggtttgatct ccggcatatc gctggccccc
    16501 gcgccaatca atgcacgcag agattctcgc gtttcggtga tttgcccttt gacggcagca
    16561 atttgtttat cgaccgccag aatctgtgcc cgcgcgccgt ggaaaggcac ttgtgcttcc
    16621 agaccgtgcg ccactttact ctggtgcgct ttcaccgcgt aatcaatcat atcgcgagtt
    16681 tgttctaaca gatcgagcat ctgatagctg gcctgcatac tgtaataaag ctgcgctacg
    16741 cccgtggtca gcgatagctc tactgctgcg gtttctgcca gcgcggcatt atgcgcgcca
    16801 atggcggcgg caaccgctga gcgatgcaca ccccacaaat caagatccag tccggcaaac
    16861 aaacctactg tggcttccgt atagtacggc ccgtccatac ccagtgaggg cgcatccatc
    16921 gcataagggc ttaaaaagcc gttcgccgag acgcgttggc ggttgagcat ccctaacgct
    16981 gcgacctgta attgtgaacc ggcatctaac aaatcggcct gggactgcgc tttttcttcc
    17041 cgcagtttcg cttcggcgag ggtgtgtgaa ccacttagcg tccgttggat cagcgcatcc
    17101 agctgcgggt cattgagttg tttccaccac tgcgcctgcg gccagccgga gctggcaaga
    17161 tgaatatcgt cggccagttt gatttgttcc ggtttgagct gttgatgagg tgcagaatcc
    17221 ttacgtacca gggcacagcc ggaaatcagc gtcgtgctgc cgagaatgct gcacaacagc
    17281 agacgtgaaa gttgacgatt gatcattgcg tggctccttg tgcctgttcc gtggcgggcg
    17341 ttaatgccgg ggctgtccag tctggcaagc gggcgaaaag ctggcagacg tgttgctcct
    17401 gttttaataa ggtgggcagg atggcctgcg aggcgggtgt ctcttcaagc gttatttgag
    17461 gagaacagct gagtgcggtt gccagaccgg cagcgtattt ttccagggcg tcggcaaact
    17521 gacctgctct gtccggctgt agtgcgttat ccagcgcctg cgccgagttc caggtggcat
    17581 cccaggcgtg aagaagatcg cggccctgac gaataaccgt ttgcgaacgt tcaatcagta
    17641 aggcgcgttc ttcgctgtcc agttgacgct ccagcgccac gcgttggcac atctcttcac
    17701 aggcattaaa cgccgcatgc agacctatac gaatttgcag ataagtgcgc agagccgtga
    17761 cttcctgctg gcgtgggatc cgcattactt tacttagcat acccagcgca ccggctagtt
    17821 tttgcggcag agtgcgcgct tcactttcag gccagacaaa ggtgtaaatc accgcggaca
    17881 ccacggtacc aatgatgata cccagggcgc gatcgcgaat ttccaccagg tcgtacactg
    17941 ggccaaaaac gttttcgagc gtggcgagcg cgaaggtgac gaccatctgt gtgccgatat
    18001 aagaagagcg ttcagagctg gtggcaatcc atgcgcccaa caggaaaatc ggtgccagca
    18061 caaacagcaa ttcgacaata ttgtccagcc agggcatgac cagtagcgtg aataacagcg
    18121 ccagaatcgc gccgcaaaag gccccgccaa aacgcagcac catcttctgg tacgacgaac
    18181 cgacatttgg attagcgacg atcacgcagg tcagcataca ggtgtgaatg ccttcccagt
    18241 ccacgccgct gtaaaaggtg taacagatca aacaggcgag caatgttttt accgcgtagc
    18301 gtatatagtc tggattggta aaagcatcgg cgaccattga tggcggtttg gcggcgggcg
    18361 ttggcggcgt attcgggttc atctggccca gttgtaacaa cgtctggcag atattctcca
    18421 ggttacattc ccgtgccgcc accgcttcac tttcactgat ccgccagtcg ctttgccagc
    18481 actgaccttc agcaacggca tgctgcagct tgttgatttc tgaggctaat ttttgccgaa
    18541 attcaataat tgcctgagaa tcagcaaaag aggtgggatc gtagcgattc agcgtcgagt
    18601 aaatgtaggt taccgttgcc acgcagcttt gccaccatgc gctttgagtt cgccagttgg
    18661 catcgtccgc gagacaaaag acattcagtt tttgcagcgc cagcgcctct ctttcaatcc
    18721 gcgtttcggg tagcggtgcg aggctgtctg tcaggtgact aatggcatca tcaagccgat
    18781 cattaagcgc ctgatgcatt tgcgaaatgg cacgactggg aaaccacagc acgccgatta
    18841 acgtcatcag caaggttgga tagaggccaa caacgataca ccacagcgtt aagcgcacga
    18901 ccacttccgg atagtcgagc atggcgggga aggtttgccc gtaaatggcg acaatggcga
    18961 cagcgaaaaa gaccagtccc agccgatggg tgcgcatcaa aaacatgcag cccatcagga
    19021 tcggcccggc gatgatcaat cggatcaacg gttcgccgta tgaccatttg tagatcaaaa
    19081 acaggctgcc gatctccagc accgtggcaa ccacaaacaa gatcgccaca aatttggtgt
    19141 aaaacgcgtt cgactgaata ccgtaaaaca gcactgccag cgataacgcc acaaaaggga
    19201 tctcaaaagt catcgagatc agaatcacca gcaggcagcc tacccagagt tgcacgatct
    19261 gcggcacgcg gccgggtcgc cgctcgctta actcttcatg aaagaacgcc agcagcctga
    19321 ccaccggtaa tggcagggag ttgagcgcgc tcattattgc ggctcaagat tagcgactgc
    19381 cgaagcgccg atgcggaaca tttccgggtc aggtttatcg accatgattt tgaccggaaa
    19441 acgctgggca acgcggaccc agttaataga gcgagaaact ttcggcaggc cgcccagcac
    19501 caggccgccg tcattcggta gcacaccgta gccaatcgaa tccactttac cctcgaaggt
    19561 tttgccgctg tcactcatca ggcgaatcgt tgcgggtgta cctgagcgaa tatttttcag
    19621 atcggtttcg cggaagttgg cgatcacgta ccagtgacga gtgtcgatta gggtaaaaat
    19681 agggcgcatg gcagaagcaa attgcccgac ggaggttttg agggaaatga cccggccatc
    19741 aaacggcgcg cgaacggtcg ccatttccag atgcagtttg gtcagggcaa tatccgcttc
    19801 gaccgccgca cgctgggcaa ctaatacatc cacgccgctg acggcgctgg cggctgactg
    19861 cgcctgtaac aatacggcat taagatccgc ttctgcggcg cgctgcgccg ttcttgcacg
    19921 gtcaacatct tccgctgaga caaaaccttc tttcagtaat ggctcggtgc ggcgtaatgt
    19981 atctgtggcc tgtttcgcgg cggcacgtgc tttttctacc gtggcattaa ccgagtcggc
    20041 accaaactgt tgggcgtcaa cgctacgctg ggtgagcata atttgcttat ccagcgccgc
    20101 gagggaggct tcagctttcg ccagattggc ttcgtacggg cgcgggtcaa tgcggaacag
    20161 caaatcgccc tgtttgactg cctggttgtc ggtgaccgcc agttctacaa tgcggccgct
    20221 gacttccggc accacatcaa tggtatctgc tgacgcgtaa gcgtcattag ttgatggcgc
    20281 actgtctacg cgccagataa cgaaaacaag ggcaaccagc gccaacgcaa ccactaacag
    20341 agcagggaat ttactgcgag gagctttttt cggcgtactt tccatgagcg cgtctcaaat
    20401 agattagaaa aatgccagcc agaacagcat ggcgtagaca gcaaaaaggg cggtataaat
    20461 aattccgaca aatgccagat tgatatttgc ccgctgaata attcgcctcg tgattagcgt
    20521 caaaataagg ctggcaatgg cgcagaaaaa ccagctggga taataagcgc cgatcaccgg
    20581 gattgccgga gataatgagc atcccgaaac catgaagacg ggaattatcc aggctgtttt
    20641 tttgagttgc atcgccatgc gagagagaac tgttggcata ttaaatacat cctgtttgct
    20701 gcgaacaata tctgtagtga atatcaatat ccattgaagg cgtcagtatg gctattttct
    20761 tgatgaataa aaatagcttt attcagccac cgcattcata acttatatat tttatgtgtt
    20821 aattgattgt atgtattttt ataataaatg cttttggggg cttaagcgcc cccaaaagtg
    20881 agtggcatta atttggggtt acgatattca cccacaaatc gaaattatcc agacaggcaa
    20941 taatttcttc cagtttcgcg ccattgccaa taattttggc tttcttcgct tttaccagat
    21001 ccgccatttt ggcttgtcct gtcagcacgg cgtgcagatc ttcacggctg atgtagaaag
    21061 aggcgtcggc ttgcggttgc agtgttttac ggtagttaag cacgctatcg ttcagcgtca
    21121 ggttgaggtt atcgccgttg ctcatattga agttcaggct gatattttta cccgcagctt
    21181 tcgcgctatc gaggcgaacg gacataaagt cgaacagcat ttcgaccgac atcccgcgaa
    21241 tggtgtccgg ggaaccggtg gtgccgtggc tgaacttatg caccccttcg cgcagctctt
    21301 tcgcgccggt caggtagaaa ccgcgccagg tggcggactc ggcctgatag cccagctgtt
    21361 caaagttatt cgcttgcaga ttcttcgcga cctggtcacc cgggttggcg gcaatcacct
    21421 gtttcagcag ttctgccgac cagcggtaat caccttgctt gttcgcttct tgcgccaggc
    21481 tgatgacacg ggcagaaccg cccagcgcct gcacgtaacg tttacccatc tccacctgac
    21541 catacggatg caggttagcc gggttaccgt cgtaatagcc aagatagaag ttatacaccg
    21601 cgcgggcgtt gtggctgaca gaaccgtaat agccacggct ggcccagtta ttggcaagtg
    21661 caggcggcag tttaatcatg tcgccgattt cattcatggt gtagccctgg ttcgccaggt
    21721 gcagggtctg gtcgtgaatg tacttgatag tatcgcgata tttaccaata taatcattga
    21781 tatgcttatt gccccggacc ggccaggtgt gcggcataaa caggacttcc gcgtcgttac
    21841 cccacatatc cagcgtttcg ttcagatact cggtccactt gctggtgtcg cgggttttcg
    21901 cgccgcgcag agtgtagaag ttgtgcaggg tatgcgtggc gttctcggcg gtacacagcg
    21961 ctttcagggc cggaatatag aagtgcattt cggctggtgc ttcgctacct ggggtcatca
    22021 ggaagtcaaa ctccaggccg tcgataatca tcttctcacc ggttttggtg atggttttgt
    22081 tcggtgcgat gatgctcggg tagcccgatg ccagcgttac gccaagacca ttgccgatgt
    22141 taccctgagg gttatgcgcc agcagcaggc cgtaggagta aagtgcacgg tggctcataa
    22201 tattacccgc cagtacgttt tcgctgatgg cttcgtccat aaagccagca ggggcgataa
    22261 cctgcacttt accggatttc acatcagctt cagagataat gcctttcacg ccgccatagt
    22321 ggtcggtatg gctgtgggta taaataaccg caacaatcgg tttttgcggg cgattttgga
    22381 agtaaaggtc aagggcggct tttgcgctcg gtggcgtcac cagcgggtcg atgacaataa
    22441 tcccggtatc accttcgata aaggtgatgt tggagatatc ctgaccgcga acctggtaca
    22501 ttctgtcggt gactttaaac aggccggaaa taccgtttaa ctgcgactga cgccacaggc
    22561 tagggttaac ggtttcgggc gcgggcgcat tgatatcaaa tttataatct tccccgcgat
    22621 aatatggttt gccattagca tcgcgcagaa taccttcatc cagcagcgga gcgataaatc
    22681 cacgctgagc gtcgtcaaaa tcctgacgat cgctaaacgg taatgatttg gcgtaattct
    22741 gattaacctg ttgggtatat tgagtggcgg ctttcgcttc ctctttcgcg ttagcggtat
    22801 ttaccatcat gccgctggcg gcagttaacg caataacaat tctgctcaaa cggaataacc
    22861 gagagttatt catataaatc tccatttatc atttatgtcg taaatatgta atccatacaa
    22921 aatacgtcat ttaaagctgg ggttatcata attgggaatt tgcgacttta ataagtggaa
    22981 gtgtgagctg aacgatccat tttattaggc atttgtgctg aagagagaaa attacgcgaa
    23041 tttattatct ctgtaaataa tatgaggtgt tttatatatt tattatatat attgtacttc
    23101 ggcaaatact gagcacaatt tatcaatgca accggtgttt ctttttaaaa aacgtaccgg
    23161 agcaatgggc ggtcatgtcg ctggcaccgc aggattctgc gttgctgtgc cagcctttta
    23221 ttcatggtca atgagtgagg tgattgataa agacaccagg tcgtcagagc gcactgatta
    23281 tccgcattat gccagtgaag ttgcactggc ttttggttca cgagtggttg gcctcgaact
    23341 ggcaaaaatg attgtggatg cgtggctggg cgcacagtac gaaggcggtc gtcatcaaca
    23401 acgcgtggag gcgattacgg caatagagca gcggagaaat tgagattcat ccactacttg
    23461 catggatgag taatgattaa tgtggataga gtttcttttt gaggttggct aatgaaacgc
    23521 tttccgctat ttcttttatt caccctgctc acgctgtcca ccgttccggc ccaggccgat
    23581 attatcgacg acaccattgg caatattcag caggcgatta acgacgctta taaccctgac
    23641 cgtgggcgag actatgaaga ttcgcgcgac gacggctggc agcgtgaagt gagcgacgat
    23701 cggcgcagac aatatgacga ccgccgccgc cagtttgaag atcgccgcag gcagctggac
    23761 gatcgccagc gccagcttga tcaggagcgt cggcagctag aagatgaaga gcggagaatg
    23821 gaagatgagt atgggcgatg aggttgggta tggagcaggc atcgcccctc accccaatgg
    23881 ggagagggag aaaaccagcg caatattcaa tatcgagcac aatcggtccc ctcgcccctc
    23941 tggggagagg gttagggtga gggggccagc gcgcacattc cctctcatca cgccacccca
    24001 atctccatcc catcaaatcc cgcctcaaac cccgacggca gtgcgttttc catcagccac
    24061 gcatcaaact ggtggctgat atgggtcaga atcacccgtg gcgagcggat aacctgattc
    24121 agcgccagca cggtgtttaa atcacagtga ctacgtggcg catcctcgcg cggcgggtgg
    24181 ctgcaatcaa tcaccattac ctgcggctga ttattgcgta aaaatttcag cgttttttcc
    24241 ggcaagcctg cggtgtcaga cagccacgcc acccggctgt gtgccgtttc cagcagataa
    24301 ccgaaggtca gttttgagtg gttgagcggc aggggcgtga cctgtaaccc ctgcaaatca
    24361 aacaccacaa acggttccac cgtgtggctg aaatcaagca ggcccggatg tttaaacaga
    24421 tcgtcgcagc cctgttcatc cggcgggccg taaaccggga tcggatcgcc cacgccccag
    24481 cgcagcggga atagcccctg cacgtgatcc atatggtagt gcgtcagcaa aaactgctgg
    24541 aacgatccgg gcggccagcg atcggcgaga tcgtgcagcc cggcgtcgat cagggtgatt
    24601 gcgtcgttaa acttcactac gccgctgcat ggctggcggc gatactgcgg tgagcgccgc
    24661 gctctggcgc aggctacgca ctcgcagccc catgccggaa cgccctgtgc gccgccggtg
    24721 ccggtgagcg tgagggtcag gctcatgtta cagcgccttg gtgaagcgga agtggctctg
    24781 ctcgtagcct tcacgcaggt aaaaacggtg cgcgtcgtgg cgcttcacgt tggtggaaag
    24841 ttcggtcatt tcggccccgg cctggcgggc ttcttcttct gcccacgcca gtaacttact
    24901 gccgacgttc agaccgcacg cctgcggcat caccaccagt tcctgaattt cgccgatcca
    24961 gttgacatga tgcagatgaa actgcaaatg caggccgatc atgccgacaa cttcgccatc
    25021 cagcagcgcc agatggtagc gcatgctcgg gtagcgcatg ctcgggtcgc gcaggttggc
    25081 gttaaagccc acgcgaaacg cgtggtggtc aaactccgcc tgttttagct cacaaatcag
    25141 cgcgtaaacc gcgtcggtat cgtactgcgt ggccgggcga agctcacaag caggcatggt
    25201 gtttctcctt ctgatgaatc agcgtcagca gtgtgtcgac cgactggcgc aggctgccgt
    25261 cattgttgag cgtatggcaa tcctgtggag tatagcgggc ggcgcgcgcc agccgggcgt
    25321 taatttcact ggtgttttca cggccacggt ttttcaggcg ctggcgcagg atctccggcg
    25381 aaacctgtaa acagacgggc agcagcgccg attgatagcg cgcccgtgcc tgcggcaaat
    25441 gcgcgcgtga accgttgacg actacgtcga atccagcgtg cagccagagg tcaatctcga
    25501 tgccgacgcc ataatacaga ccgttagcgt gccagcttaa ggccagcagg ttttgccccg
    25561 cgcgggtaaa aaactcccgc tcactcaggg cgatatggtt ttcacttccg gcgctggcgt
    25621 cgcgcgtgat gtagcgatgc gccaccagta actgcgtttg ttcccgcagg cggagttccg
    25681 ccagcaggct gtctttcccg gagccggacg gccccattaa ccaaatcagt tttcccatca
    25741 tcagaacacc cttttaccct gacgccagac gtggtcgata tgaatgtgat tgccctggcg
    25801 atgcgccagc accaggtcag cgcgtttacc ctcgccaatc accccgcgat cctgaagatt
    25861 cagcgcctgc gccggatttt tggtcaccag cctcaccgcc tgcggtagcg taaagcggtt
    25921 gctctcgtca tcggcgacgc ggaacgccgc atccagcagg ctggcggggt agtagtcgga
    25981 agagaggata tccagcagac caagctgcgc cagttcactg gccgccacat tgccggagtg
    26041 cgagccgcca cgcacgatat ttggcgcacc catcagcacg ttcatgccat gcttacgcga
    26101 ggcttccgcc gcttcgaacg tggtggtaaa ttcggcgatc acgctgccaa gttggtggga
    26161 ttcggcaacg tgggcgtgcg tggcgtcatc gtggctggcg agcgcaattt gtcgcgcgcg
    26221 gcacagggcg gcgatggatt cgcgattcgg ctgcgaccag cgtgcggcga gcgccaattg
    26281 ctcttcttcg tactgctgca tctgcgcatc ggtgagggag tatttgccct gataatattc
    26341 gcgatacttc tcgcggttag cgaactggcg ctggcccggt gagtggtcca ttagcgacac
    26401 cagcgtcacc ggttcgcgct gaaccagttt ttcaaacagc ggcagtgtgg tgtgatgcgg
    26461 cagctcgcag cgcaggtgca gacggtgctc ggcgcggttg acgccgcgtt tctgcgtctc
    26521 ttcgatggtg ttgatcatct tctccagatt ctccagctga tcgccgccgt cgcgcacgtc
    26581 gccaatcgcc accgcgttca gcacggtggt gatgccgctt gccaccatca gcgcgtcgtg
    26641 gctgctcatc gccgaatggg cgggccagtc gactttcggg cgcggggtga agaatttatc
    26701 gaggttgtcg gtatgcagct caatcaggcc gggtagtagc cagccacctt cgccgtccat
    26761 cgcttctggc aggcggctct ggctttcggc aaaggcgcgg atttcgccat cctgcacctc
    26821 cagcgaaccg tgcaccacct cgttttccag caccagctta acgttattga taatcatgaa
    26881 gaggctccca ttgggtgcag gcggtcggcg acgtcattac gtacagcttc gtcatggaag
    26941 atgccgacga tggctgcgcc acgggctttg gcttcgtgaa tcagttccac caccgcggcg
    27001 ctgtttttgg cgtccagcga ggcggtaggt tcgtcgagca gcagaatggg gtagtcgacg
    27061 ataaagccgc gggcgatgtt gacgcgctgc tgttcgccgc cggagaaggt cgatggtgcc
    27121 aggtgccaca ggcgttccgg cacgttcagg cgggtgagaa gacgcgcggc tttagcggcg
    27181 caggcttcac gcggaacgcc ggtatcgagc agcggctgca tcaccacttc cagtgctgag
    27241 atacgcggga tgacgcgcag aaactggctc acccagccga ctgtggtttt gcggatttcc
    27301 accactttgc gcgctggcgc ggtgaccagg tctacccact cgtcaccgtg tttgatctgg
    27361 atttgacctt cgtcgggtag atagttggcg tacagcgagc gcagcagggt tgatttgccg
    27421 ctgccggagt gaccgtggag caccacgcat tcgcctgcgt tgacggtgag cgaggcacgt
    27481 tgtaagacgg gcaggcgtac gccgttttgc tgatgcagga tgaaggtttt actgacgttt
    27541 tgtacgttaa tcatttttcg cctcgtggtt cgggtgtcgg atgcgacgct gacgcgtctt
    27601 atccgaccta cggggagcgc atttgtaggc cggataaggc gtttacgccg catccggcac
    27661 cggctcaatt ctgcaaaacc gatgacacca gcagttgtgt atacggatgg tgcgggtcgt
    27721 cgagcacgcg gtcggttaac ccactctcca ccacttgccc ctgcttcatc accagcaaac
    27781 ggtccgccag caggcgggcg acgcctaaat cgtgggtgac aatcactacc gcgaggttca
    27841 gctccaccac caggccgcgc agcaggtcga gcaggcgtgc ctgtaccgac acatccagtc
    27901 cgccggtcgg ctcgtccata aacaccagct tcggatgcgt caccaggttg cgggcgatct
    27961 gcaaacgttg ctgcatgccg ccggaaaagg tggtcggcag gtcgtcgatc cggttggcgg
    28021 gaatttccac ctcttccagc cacttctgcg cggtggcacg aatatcgccg taatgacgtg
    28081 ccccggtcgc catcagccgc tcgccgatat tgccgcctgc cgacacctgg cggcgcaggc
    28141 cgtcgagcgg atgctgatgc actacgcccc attcggtgcg cagcaggcga cggcggtcgg
    28201 cctcgctcat tgcgtacagc gaacggctct catagtgaat ctccccctgc tgcggcgtca
    28261 ggcgcgcgga gattgatttc agcagcgtgg tctttccgga gccggactcc ccgacaatgc
    28321 ccagcacttc ccccggccat aaatcaaaag agacatcgct aaagcctttg cccggcgcgt
    28381 aaaggtgggt caggttattg accgaaagta acggttgatt cattggtttt ttgcctcgct
    28441 ctgttggcgg caataatcgg tatcggagca gacaaacatg cggtttccgg cgtcatccag
    28501 caccacttca tcaagatagc tgtgggtcga tccgcagatg gcgcatggct catcccactg
    28561 ctgaacggtg aacgggtgat cgtcgaaatc gagactttcc acgcgggtaa acggcggcac
    28621 cgcatagatg cgcttctcgc gccccgcgcc gaacagttgc agggcgggca tcatgtccat
    28681 ttttgggtta tcgaatttcg ggatcggcga cgggtccatc acgtagcgcc cgttcacctt
    28741 caccggatag gcgtaggtag tggcgatatg accgaagcgg gcgatatctt catacagttt
    28801 cacctgcatc acgccgtact cttccagcgc gtgcatggtg cgggtttccg tttcgcgcgg
    28861 ctcgataaag cgcagcggtt cggggatcgg cacctggaag ataatgatct gatcttcggt
    28921 cagcggcgtt tcggggatgc gatggcgcgt ctggataagc gtcgcatcgt ccgtacgttc
    28981 agtggtgttt accccggtca cgcgcttaaa gaagttgcga atcgacacgg cgttggtggt
    29041 gtcgtctgcg ccctggtcaa tcaccttcag cacgtcgctt tcgccaatca cgctggcggt
    29101 gagctgaatg ccgccggttc cccagccgta gggcatcggc atctcgcgcc cgccaaacgg
    29161 cacctgataa ccggggatcg ccaccgcttt taagatggcg cggcggatca tgcgtttggt
    29221 ctgctcgtcg aggtaggcaa agttgtagcc gctcagatta gccatggttc tgctcctgtt
    29281 gcagacgttt gagtagctcc agttcggcct ggaaatcgac gtagtggggg agtttgaggt
    29341 gcgagacaaa gcctgcggct tcgacgttgt cggcatgtgc cagcacgaac tcttcatcct
    29401 gcgccgggcc tgtcgcgtgc tcgccgtact ccggagcctg caacgcacgg tcaaccagcg
    29461 ccatcgcttt gcgctcgctc atgccgaaca ccagcccgta gccgcgcgtg aagtgcggcg
    29521 gctcatccgg cgggtcaata aaaccgttga ccatttcaca ctcggtcatc agcagttcgc
    29581 cgacgttcac cgcaaatccc agctcttccg gcataatcga cacgtcgatg taaccactgc
    29641 ggatttcgcc cgcgaacggg tgattgcgtc cgtaaccgcg ctgggtagag taggccagcg
    29701 ccagcaaata gccttcgtcg ccgcgcatca actgctgcaa acgggaagaa cgtgaacagg
    29761 ggtaaactgg cggagtgcgg gtgatgtcat ccggctgtgc gccgctatcc tcttcaaact
    29821 tcgccagccc ctgacgcgcc agcaggctga aaacgtgcgg cgacggggat tgttcgctgt
    29881 ctgcggtggt cagcgtcggc gcttcgccgt ttgccagcag ggtgaaatcg agcaggcgat
    29941 gggtgtagtc gtaggttggg ccaagcaact gaccgccggg aatatcttta taaaccgctg
    30001 aaatacgccg ttcgagacgc atctccgtgg tgtcgagcgg ctcgcttacc gccagcttcg
    30061 ccagcgtggt gcggtaggcg cgtagcagga aaatcgcttc gacgttatcg ccgctggcct
    30121 gtttcagcgc cagcgccgcc agttcgcggt cggcaatgcc gccttcggtc atcacgcgat
    30181 ctactgcaag attaagctgc tgttcaatct gggcgacgct cagttcaggc aaatcggtat
    30241 tgccccggcg tcggctctct tgcagggcgt gggcggcgtc gatctccttc tcgccccctt
    30301 tcacggcaac gtacatcagc acacctccac atgagtggtt cgcgggatag ccagcagccg
    30361 ctcgccgcag gtcaggatca ggtcgatgcc gagcgggaac gggtgcgggc gctcggtgag
    30421 ttcgtgcaga atgcactccg gcagctgcgg agcgatcatt cgttcttcgg caatacccgc
    30481 gccagtaagg cgcagcatgc gcccgccgct caggctgacg acctgtaaaa tcagcgtcgc
    30541 gcccgcttcc ggcgcaacag cggtgccgct ggaaagagcg ttgagctgtt cgctggaaat
    30601 cgcctcatcc gttaccgcga aggtcgccag ttccgactga ttgaccagcg gcgcgttggt
    30661 atgaaaacgc aggctctggc tgacgatatc gttacttaat ggcgcggaaa gccacaccgg
    30721 cgtgtcgtta tcagccagcg tcagcagcac gctggtggtg gcgatattca gcggctgcca
    30781 gccgcgtttg agctgatgca gggcgacaat cacgcccggc tcgctcatgg cctttaacag
    30841 gcgacgaaaa ctgtgctggg catcctgcac aggaagcata aaagcggttt ccagggtcat
    30901 gcgttgtctc cgcgaaccat cgtaaagaag tcgacccggc tggcgttcac ttcggcctgg
    30961 cgtgcggcaa tgcgtgccat acggtcagcg tccagtgggg caataagggt ttctgataag
    31021 ttttgaaaat ggcgagattg ctgcatcaac gcgtcaatca gcgcgcagcg ttcggcgtgc
    31081 tgtttgtcgc gccccagcac ccagctgtag ccgagggggc cgtcagtcag gcgtacggcg
    31141 gcgcgggtca gcgtggcgtc gccggcaaaa aagcgttcgc cggtaccgcc cattcgcggc
    31201 tgaatctgta ccaggccggt ttcggcggtg cggatcactt catagttggc ggtgatgttc
    31261 agcgcgttca ggcgggctgc cagttcagcc ggttggctgt gcgccagcat ggacatccag
    31321 tgctggcggg tcgcgatatc tgcgtgcatt cagtgctcca tagtgaattc aatcatgtcg
    31381 gcgcgcgtca ggctgacgga gtactccgcc gggctgcttt caccgtcacg gtggttaagg
    31441 gtgcgcacgc acagcagcgg cgacatattc gggatttcaa gacgctggca ctctttggcc
    31501 tgggcgcggc gggcgctgat ccgcgtctgg ctgcggcgca gcgcaatccc ggtttgctcg
    31561 cgcagaaaat cgtgcagcga gccgctgtcg aagcgttgca gcgtcggcca aagggtgagg
    31621 tccgcaaagt agtggtcgat taaacagagc gcgatgccgt tgacccggcg cagggtgcgc
    31681 aggtggatga cgttctcccc ctcggttatc cccagcgcgt cagcgacgtg accagatgcc
    31741 gggcgcagca ccgacagcag tttttcgctg gtgggatggc tgccctgatc cagcaggttc
    31801 tggctaaaac gcgcctgggc gttgagcggg taatcgaacg ggcgcatcag caccagcacg
    31861 ccgacgccct gacggcgctg tacccagcct ttttccacca gttggtcgat ggcgcggcgc
    31921 agggtgtggc gatttacctc aaagcgcgcc gccagctgct gctcggcggg aagatagtcg
    31981 ccgcagcgat agtgttgacg aagctcctgc tcaagttttg cggctatctc ctgatagcgt
    32041 gttgggtagc tggtcggatg tgtagacaag tgcatagata tcaatgcctc gcttatcaga
    32101 taaagtgctt acgcaaccgt tgagagagga aatccagcag gctgaccgtg acgatgataa
    32161 gcaccatcag ggcgcaggtt tgttggaact gaaaaccgcg aatcgcttcc cacagggtga
    32221 cgccgatccc gcctgcaccg accatgccga cgacggtcgc cgagcggacg ttggattcga
    32281 agcgatagag ggagtaggag atcagcagcg gcattacctg tggcagcacg ccgtaaagga
    32341 tctcttccag cttgttggcg ccggtggcgc gaatgccttc taccgggccg ggttcgatcg
    32401 cttccaccgc ttcggaaagc agcttggaga gcacgccggt ggtgtggata aatagcgcca
    32461 gcacgccagc gaacgggccg agaccgacgg cgaccacgaa cagcatggcg aagaccattt
    32521 cgttaatggc gcggcaggca tccatcaggc ggcgaacggg ctggtaaacc caccacggca
    32581 ccaggttttc ggcgctcatc agaccgaagg ggatggagag aaccactgcc agcgcggtgc
    32641 cccagacggc gatttgcagc gtgacggcca tttcggtgag gtaatcctgc cactggctga
    32701 aatcgggcgg gaagaagtcg gcaacgaagg ttgccatgtt gccgccgtct ttaatcagcg
    32761 taagcggggc catttccgcg ccctgccacg agacgaccag cacggcgaga acaacggccc
    32821 agctcagaag cgagaaccag ctacgcttgg gtggggcgat ggtgatggtt tgcatgtttg
    32881 gctccgttta atgttttctc cctctccctg tgggagaggg ccgggatgag ggcatcagcg
    32941 tgcgcatttc cccctcaccc taaccctctc cctcaaggga gaggggaccg atcgagcaca
    33001 ttactgcacc gctttactca ccgaactcat cgcgcttaac gcgttgttca ggcggtccaa
    33061 gtcatccagc tgcgcctgaa tctcggtggt tttcgccagc ttgtcctgct cattcagtcc
    33121 tttattgctt tttacgccct gcatctcttt aaacagtgcg agctggcgaa tcggcaccag
    33181 ttgcaggtcg ctggaggcgc ggaacggggc ccagcccagg cgttccagca ccgctttctc
    33241 ttccggcgtt tttccgtagt tcataaagaa gtcgtagatc ttgtctttgg tggtttcgga
    33301 gagattcttg cgccagacga tcggatcgcc tgggatcagc ggcgacttcc agatcacctt
    33361 cagttctttc agcttctctg gcgcggaggt tttcagcttg tcgaggtttt cggtgttgtt
    33421 ggtggcaaca tccacctgct tgttggcgac ggccagcgcg ttggtttcat gcccagcgtt
    33481 gacggtgcgc ttaaagtcgc tggcggagat attgtttttg gcaaagacgt agtaaccggg
    33541 gacgaggaag ccagaggtgg agttaggatc gccattgccg aaggtgagat ctttccgctt
    33601 cgccagcaga tcgttcaggt tgttgatcgg actatctttg ttgacgatca acacgctcca
    33661 gtaacctggc gatccatccg ccgcgaccgt ctgggcgaag acctggccgt tggcgcgatc
    33721 caccgcttcc attgccgaca ggttgcctta ccaggcgata tccactttat tgaagcgcat
    33781 tccctggata atgcctgcgt agtctggggc aaagaaggcg ttcaccttca cgcccagctt
    33841 cttctccata tcctgtaaga atggcgtcca ttgcggtttc aggttttgct gtgattccgt
    33901 tgaaataatg ccgaaattca gcgccttttc ctgctcttcg gcgtgtgccg ggcttaacag
    33961 ggtgctgagg ctgaacatgc tggtgaaggc cagcgaggca attatcttag cgttcattcg
    34021 ttttcctcaa tgatggggat gtcaggcagc tttcgcgttc tcttcgatgc gattaatgct
    34081 gcggtagaga tggtcaaaac gttcgttatc aaactgttgg ctgctgccgt cgtagaaaac
    34141 gtgcccctgg cgcagggcga cgatgcgttc gcagtagcgc agggcgtaat ccacctgatg
    34201 cagcgtgacg actacggtga tgccgtcgtt ctgattgatg tcgcgcaggg tgtccatcac
    34261 gatgcgggcg gattccgggt ccagcgaggc gatgggttca tcggccagaa tcaccttcgc
    34321 ctgctgcatc agcgcgcggg caatcgccac acgctgctgc tgtccgccgg agagggtgga
    34381 aacgcgttga tgggcaaaat gcaccatgcc aacgcgggtc agcgcctgta acgcgcgttg
    34441 tttctgctcg cgggtgaacc agctaaaaca ggtgcgccag aacggcgtgc tgccgagcgc
    34501 gccaatcagc acgttctcca gtacgctcag gcgattcacc aggttgaatt gttggaagat
    34561 gtagccggta tgggcgcggc ttttgcggat atcgcgcgcc agacggcctt cgcgctggac
    34621 tgtgcggccc agcagctcga tatggctgcc ggcggattta tcgccggtaa tcaaaccgct
    34681 taagtgacgt aaaagtgtgg atttgccgga acccgacggc ccaagcagag ccaccatttc
    34741 actgtgatga atgttcagat caaccgcatg cagcgcttga tgctgattga aggttttggc
    34801 gagcttctcg acacggataa tcgtttgcat gatgcagcct ccctaaaaaa gtggctccat
    34861 cgtggcggat tattgtgacg atttggttaa ttaaaagtga ctaacagatg aagagttaac
    34921 gggaattcga tgacagtgcg ggagggcggg cctcccggcg ggttattgcg ttggttgttg
    34981 tttgacgaca ttaatcatcc acggtacgcc aaatttatcg gtgactttgc cgaagccatg
    35041 cgcccagaaa gtttcctgcc aggccatttc aatttttccg ttagcggcaa ggttatcaaa
    35101 ccagcgtttt ccttcttcga cctgttgcga atcgagcacc agcgtaaagc cggagtagct
    35161 ggcttttcct gacggtatag catcgctcat catgatgtcg cttccggcaa tgcgcacgtt
    35221 ggcgtgggcg atggcggtat cgggaaattg cattccggaa gggcagttct cggcgctgtc
    35281 ctgcgctgat tttggcattt cgccgaagct gattttatag agcagttccg cgcccaacgt
    35341 acgttgataa taggcaatcg cgtcggaaca gttaccggca aaagagaggt agggacttaa
    35401 cggcatgatg gtgacctcag ttaagagaag ccagttaagt gtagttcgaa atttatacag
    35461 atgagaggga agcctgataa ggcgcggtca gcgtcgcatc aggcagtcgg catcgttgcc
    35521 ggatgtggcg cgagcgcctt atccggctta ccgatcacaa tacaatcagt tctttttcac
    35581 aaactcagat ttcagtttca tcggaccaaa accgtcgatt ttgcaatcga tgttatggtc
    35641 gccttcaacc aggcggatgt ttttcacttt ggtgccaatt ttcagcatcg aagagctacc
    35701 tttcaccttc agatctttaa tgatggtaac gctgtcgccg tcagccagca gattgccgtt
    35761 agcatcttta acgatcagct cgtcgctttc ctgtgcaggt tctgtgtcgt tccattcgta
    35821 ggcacattcc gggcagatgt acatgccgtt atcttcgtaa gtgtattcgg agttgcattt
    35881 tgggcagtgt ggtaatgaca tgtggatttc ctcaaaagtc agcagggcaa aagcgccaaa
    35941 aaacggcaga ttgccgaaaa aggccgcaat tatacacaaa atccctgagt ttgtcggggg
    36001 tactgctgat tttagacgac gatcgttttc atttgaaagg aaacgcaaaa agaaaataat
    36061 ctttttgcct ctatttatta tttaagataa tgttaatgct ctacctgttc tttttttatt
    36121 cacatgatat ttttatcttt ctgacgtttt aaacgcatca gaagacgtta tttattctga
    36181 taaaaaacaa cacactaaat ataaaat
//
LOCUS       DAJVUY010000022        35058 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.022, whole genome shotgun sequence.
ACCESSION   DAJVUY010000022 DAJVUY010000000
VERSION     DAJVUY010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35058
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.022"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..4083)
                     /locus_tag="OQQ72_000995"
     CDS             complement(<1..4083)
                     /locus_tag="OQQ72_000995"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS2010803.1"
                     /translation="MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARS
                     EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ
                     RNLQLPLKGIADERRRRGETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGL
                     SATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASSTGEDSHA
                     GREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVD
                     AAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLEL
                     GIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC
                     MFAGRLENLTPPHNPLDVLAQQTVAAAAMEALQVDEWYSRVRRAAPWKDLPRRVFDAT
                     LDMLSGRYPSGDFSAFRPKLVWNRETGILTVRPGAQLLAVTSGGTIPDRGMYSVLLPE
                     GEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRSARLPF
                     WRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTNANIQGLIDEQRNATG
                     IVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVASD
                     DGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGR
                     TPGHRTPLWQQRLRASQLLEIAQGYPDFPVILEILRECLQDVYDLPALERLMRRLNGG
                     EIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSELLRNLLGQVD
                     PGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEV
                     ASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRVSYPLR
                     DLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEVFRR
                     LRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMR
                     VIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVAL
                     HLQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSA
                     LQEALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPISPLVS
                     YNTPNLAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTL
                     CRSMEDSGRIMRGRFVEGLGGAQFAERLTIDRWRDLATQAT"
     gene            complement(4176..4823)
                     /gene="rnt"
                     /locus_tag="OQQ72_000996"
     CDS             complement(4176..4823)
                     /gene="rnt"
                     /locus_tag="OQQ72_000996"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HCS2010804.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            complement(4926..5333)
                     /gene="gloA"
                     /locus_tag="OQQ72_000997"
     CDS             complement(4926..5333)
                     /gene="gloA"
                     /locus_tag="OQQ72_000997"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HCS2010805.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            complement(5414..6511)
                     /gene="nemA"
                     /locus_tag="OQQ72_000998"
                     /pseudo
     CDS             complement(5414..6511)
                     /gene="nemA"
                     /locus_tag="OQQ72_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
     gene            complement(6548..7147)
                     /gene="nemR"
                     /locus_tag="OQQ72_000999"
     CDS             complement(6548..7147)
                     /gene="nemR"
                     /locus_tag="OQQ72_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NemR"
                     /protein_id="HCS2010806.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYTAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            7250..7489
                     /locus_tag="OQQ72_001000"
     CDS             7250..7489
                     /locus_tag="OQQ72_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HCS2010807.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF"
     gene            7538..8434
                     /locus_tag="OQQ72_001001"
     CDS             7538..8434
                     /locus_tag="OQQ72_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HCS2010808.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQLLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            8515..9036
                     /gene="sodC"
                     /locus_tag="OQQ72_001002"
     CDS             8515..9036
                     /gene="sodC"
                     /locus_tag="OQQ72_001002"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HCS2010809.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(9037..11048)
                     /locus_tag="OQQ72_001003"
                     /pseudo
     CDS             complement(9037..11048)
                     /locus_tag="OQQ72_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994342.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(11048..11905)
                     /locus_tag="OQQ72_001004"
     CDS             complement(11048..11905)
                     /locus_tag="OQQ72_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS2010810.1"
                     /translation="MSIKTIKYFSIIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            complement(11971..12144)
                     /locus_tag="OQQ72_001005"
     CDS             complement(11971..12144)
                     /locus_tag="OQQ72_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HCS2010811.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            12345..12779
                     /gene="slyA"
                     /locus_tag="OQQ72_001006"
     CDS             12345..12779
                     /gene="slyA"
                     /locus_tag="OQQ72_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HCS2010812.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            complement(12826..13293)
                     /gene="slyB"
                     /locus_tag="OQQ72_001007"
     CDS             complement(12826..13293)
                     /gene="slyB"
                     /locus_tag="OQQ72_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HCS2010813.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            13567..14676
                     /gene="anmK"
                     /locus_tag="OQQ72_001008"
     CDS             13567..14676
                     /gene="anmK"
                     /locus_tag="OQQ72_001008"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCS2010814.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            14774..15103
                     /gene="mliC"
                     /locus_tag="OQQ72_001009"
     CDS             14774..15103
                     /gene="mliC"
                     /locus_tag="OQQ72_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HCS2010815.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            15162..15818
                     /gene="pdxH"
                     /locus_tag="OQQ72_001010"
     CDS             15162..15818
                     /gene="pdxH"
                     /locus_tag="OQQ72_001010"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCS2010816.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            15947..17221
                     /gene="tyrS"
                     /locus_tag="OQQ72_001011"
     CDS             15947..17221
                     /gene="tyrS"
                     /locus_tag="OQQ72_001011"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCS2010817.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
     gene            17280..18143
                     /gene="pdxY"
                     /locus_tag="OQQ72_001012"
     CDS             17280..18143
                     /gene="pdxY"
                     /locus_tag="OQQ72_001012"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase"
                     /protein_id="HCS2010818.1"
                     /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNH
                     TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA
                     ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN
                     VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQ
                     PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA
                     KPEHYFSATKL"
     gene            complement(18187..18792)
                     /gene="gstA"
                     /locus_tag="OQQ72_001013"
     CDS             complement(18187..18792)
                     /gene="gstA"
                     /locus_tag="OQQ72_001013"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HCS2010819.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNETLKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(18898..20400)
                     /gene="dtpA"
                     /locus_tag="OQQ72_001014"
     CDS             complement(18898..20400)
                     /gene="dtpA"
                     /locus_tag="OQQ72_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HCS2010820.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(21011..21646)
                     /gene="nth"
                     /locus_tag="OQQ72_001015"
     CDS             complement(21011..21646)
                     /gene="nth"
                     /locus_tag="OQQ72_001015"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCS2010821.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(21646..22341)
                     /gene="rsxE"
                     /locus_tag="OQQ72_001016"
     CDS             complement(21646..22341)
                     /gene="rsxE"
                     /locus_tag="OQQ72_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxE"
                     /protein_id="HCS2010822.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(22345..22965)
                     /gene="rsxG"
                     /locus_tag="OQQ72_001017"
     CDS             complement(22345..22965)
                     /gene="rsxG"
                     /locus_tag="OQQ72_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HCS2010823.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(22969..24027)
                     /gene="rsxD"
                     /locus_tag="OQQ72_001018"
     CDS             complement(22969..24027)
                     /gene="rsxD"
                     /locus_tag="OQQ72_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HCS2010824.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(24028..26250)
                     /gene="rsxC"
                     /locus_tag="OQQ72_001019"
     CDS             complement(24028..26250)
                     /gene="rsxC"
                     /locus_tag="OQQ72_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HCS2010825.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAIE
                     AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDP
                     RKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
                     "
     gene            complement(26243..26821)
                     /gene="rsxB"
                     /locus_tag="OQQ72_001020"
     CDS             complement(26243..26821)
                     /gene="rsxB"
                     /locus_tag="OQQ72_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HCS2010826.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEIL
                     PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(26821..27402)
                     /gene="rsxA"
                     /locus_tag="OQQ72_001021"
     CDS             complement(26821..27402)
                     /gene="rsxA"
                     /locus_tag="OQQ72_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HCS2010827.1"
                     /translation="MTDYLLLFVGTILVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFTAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(27479..27919)
                     /locus_tag="OQQ72_001022"
     CDS             complement(27479..27919)
                     /locus_tag="OQQ72_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HCS2010828.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(28005..28220)
                     /gene="ydgT"
                     /locus_tag="OQQ72_001023"
     CDS             complement(28005..28220)
                     /gene="ydgT"
                     /locus_tag="OQQ72_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HCS2010829.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(28493..28618)
                     /gene="blr"
                     /locus_tag="OQQ72_001024"
     CDS             complement(28493..28618)
                     /gene="blr"
                     /locus_tag="OQQ72_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HCS2010830.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            28831..29871
                     /locus_tag="OQQ72_001025"
     CDS             28831..29871
                     /locus_tag="OQQ72_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS2010831.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(29906..30907)
                     /gene="add"
                     /locus_tag="OQQ72_001026"
     CDS             complement(29906..30907)
                     /gene="add"
                     /locus_tag="OQQ72_001026"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HCS2010832.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(31010..32182)
                     /gene="malY"
                     /locus_tag="OQQ72_001027"
     CDS             complement(31010..32182)
                     /gene="malY"
                     /locus_tag="OQQ72_001027"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HCS2010833.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCNMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(32192..33784)
                     /gene="malX"
                     /locus_tag="OQQ72_001028"
     CDS             complement(32192..33784)
                     /gene="malX"
                     /locus_tag="OQQ72_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
                     /protein_id="HCS2010834.1"
                     /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS
                     HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF
                     VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM
                     LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS
                     AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQTQLSC
                     PTTHGFSESATRFLSQGKMPAFLGGLPAAALAMYHCARPENRHKIKGLLISGLIACVV
                     GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG
                     LSTKWYMVPVVAAIWFVVYYAIFRFAITRFNLKTPGRDSEVASSIEKAVAAAPGKSGY
                     NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV
                     VIGPQVQSVKDEMAGLMHTVQA"
     gene            33959..34987
                     /gene="malI"
                     /locus_tag="OQQ72_001029"
     CDS             33959..34987
                     /gene="malI"
                     /locus_tag="OQQ72_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mal regulon transcriptional regulator MalI"
                     /protein_id="HCS2010835.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         8785 a         9002 c         9118 g         8153 t
ORIGIN      
        1 cgtggcttgt gtcgccagat cgcgccatcg gtcaatagtc agacgttcag cgaattgcgc
       61 gccacccaga ccttctacaa aacgacctcg cataattcgc ccggagtctt ccatacttcg
      121 acaaagcgtt tgcatcgatg gaaacccgcc agggatattt tcggctatca ccgcctgacg
      181 actgatgatg ccgtagcggt cgagcatatt ttccgccagc gccagcatcc tttcggtatc
      241 gtttagtggc tccacctgca ataacgacca gcgtccagcc agatttggtg tgttgtaaga
      301 taccagcggc gagatgggtt gcgcatagac aggacgtcca cgacgagccc ggtgactgcg
      361 gcgagttgag gtgcgtgcgt tggaactgct gcgggtgagg gcgcgtaacg gtgcccaaat
      421 gtcgctggtg atgacgcctt gccagaccag cgcccataac gcctcttgca gggcagagag
      481 atcaaccgat tcgccgattt tgtcgcgtat ccgttggctg atttgttgtg caaaccaggc
      541 tcctccgtca gccagaacag cgactatcgc ttgttgcagc gccgaacgat tcgcctgatc
      601 cgcttcggcg ggagtgaacg attctgcagc atattcctgt agatgcagtg ccaccaggcc
      661 gtcatcttca cccagttttt tttgccccga ccagataacc gcaccggttg ccagtaattc
      721 atcgagcatt tctgacgaat agtcgcgtac gcgggcaggc aggatctggc tttcccagag
      781 tgaggcgggt aaaccgactc cggcaagctg ttcgatcacc cgcatcacgc catctacgcc
      841 ctcataaacg cctggcgatg ttgaggcaaa gagcgccggg ctaccatcgg tggcgggtaa
      901 tacgccctga cgttccagca gcaatcgcgc ataggtcgtg gctgcaacgg gacgcgtcgc
      961 ttctctggcg gcttgcagcg agcgcaaacg cagacgacga aatacttcat cgctcaccca
     1021 gatgtcttgt tgcagattca tcaccagacc ctgttcacgc agttgctgaa gctgctcttc
     1081 gacaatggca ataccgagac taaactcatg agccagttgt tcagccgtga ccagagcatg
     1141 agcccggaga tagcgcagaa agaggtcgcg aagcgggtaa ctgactctat gtaaataaat
     1201 ctctggcaat gactctggta gtcgtacgcc gagggcatca cgcagcctgg cggcatcatc
     1261 catacaggca agacgctcct gtccgctaat catcgctggg aagattcgtt ttactgcaag
     1321 aagattttcc agatacgacg caacctcttc actgctgcct gtatgccgtt gcgccaggtc
     1381 ttcaacggtc attggcccca gttcgcgcag caggtcgaac aatccttctt cacctttcgc
     1441 tcttctgcca ggagccagtc gttgcaactc ttcttccacc tggcgaatga cctgcgggtc
     1501 gagtaattcc cccggatcga cctgtccgag tagattgcgc agtaactcgc tgtccagcga
     1561 cagtacggat gcccggcgct ctgccagcgg ggcgtcgctc tggtacataa attccgcgac
     1621 atagccgaac aataaacttg tggcgaaagg cgagggcgta gtggtcgtta catcggatat
     1681 ttgaatttcg ccaccgttca ggcgacgcat caaacgttcc agtgcgggaa gatcataaac
     1741 atcttgcaga cattcgcgta ggatttcgag aatgaccgga aaatctggat atccctgagc
     1801 gatttccagc aactgactgg cgcgcagccg ttgttgccaa agcggggtgc gatggcccgg
     1861 agtgcgcccc ggcattaata atgcccgcgc ggcgcattcg cgaaaacggg cggcgaaaag
     1921 tgccgagctg cctaccgcct cgcggacaat ttgcagcaac ttttctggtt caaacaaaaa
     1981 aatcgcggcg tcgggcaatt taccatcagt gtcaggaatg cgcgcaacaa tgccgtcatc
     2041 actggcgacc acagacgcgt cagcgcccca tagggcatgt attcgcccgg caatcgccag
     2101 cgcccagggt tcatgcaccc gtcttccata gggagagtgc aaaataatac gccagtcgcc
     2161 aatttcatca cggcaccgtt cgaggaccag atggcgactc cccggaacga tgcccgtcgc
     2221 gttgcgttgc tcgtcaatca acccctgaat attggcgttc gtattttctt ctgccagcca
     2281 cgggggaata gtcccggaaa agaacgcgcc atccgccagt aaatgaagaa aatcgccgat
     2341 catctcgcct aattcagccg gacgtccgtt accttcacca cgccagaagg ggagccgggc
     2401 agaacgaccc ggagcaggag tcacaatcac ctgatcgcgg gtgatttgct ggatccgcca
     2461 tgaggtagcg ccgagagtga taatgtcgtt cacccgcgac tcatatacca tctcctcatc
     2521 cagttcaccc acccgccgcg aaccggcctt ttcttcacct tcgggtaata acacgctata
     2581 catgccacga tccggaatgg tgccgccgct ggtaaccgcc aacaattgag cgccaggtcg
     2641 gacggtcaat atcccggtct ccctgttcca gaccagtttg gggcgaaaag cagaaaaatc
     2701 gccagaggga tagcgcccgg aaagcatatc cagcgtggcg tcaaaaacac gtcttggcag
     2761 atctttccac ggtgcggcac ggcgtacgcg ggagtaccat tcgtctacct gtaatgcctc
     2821 catcgccgcg gcggcaacgg tttgctgcgc aaggacgtcg agtggattat gcggcggtgt
     2881 caggttttcc agcctgcctg cgaacataca ctctacaatg actgcggaat cgactaagtc
     2941 acgccgggta cgagggaaaa acagcccttt agatacaccg ccaacctgat gtccggcgcg
     3001 accaatgcgt tgtaacccac tggcaacaga aagcggcgtt gccacctgaa tcaccagatc
     3061 cactgcgccc atatcaatcc ccagttcgag actggaggtt gcgaccacgc agcgtaactc
     3121 acccgatttc agcgcctgct cggtgattgc tcgttgttct ttagagacgg agccgtggtg
     3181 tgagcgggca ataaaaacgt cgctactttg tacacggtta gaggttgcgc cggaggtcga
     3241 ctcgaaatgg gccgcatcaa cggcgataga cggggaacgc tgtaagcgtg cggcgtaaag
     3301 ctcatttaat cgtgccgtca gtttttccgc cagcccacgt gaattagtaa agacaatggt
     3361 cgagcgatgg cgcaacactt catcaaggat acccgtttca atatatggcc agatggagcc
     3421 ttcccggccg gcatggctgt cttcgccggt gctgctggcg accgatgaga catcatccat
     3481 attggcgacc ggtacgacaa ttcgtatctg cggatggcgc attgcgggcg ggttgactac
     3541 cgtaaccggg cgatcgccac caagaaaggc tgccacatcg ctggctgagc gcacagtggc
     3601 agaaaggcca attcgctgtg ctgaggtgtg gagcagcgca tcgagccgct ccagacttaa
     3661 cgccagatgc gcaccacgtt tactgcccgc taccgcgtgg acttcatcaa taattaccgt
     3721 ttcgccgcgc cgccgccgtt catcggcaat acccttcaac gggagctgca agttgcgctg
     3781 aacgtcggtg cccagagctt ttatcggtga aatatagagg atgcgtgagg ttttacgctt
     3841 atgcgcctcg cgggtatctt cgccgccttc gcggaagagc cgatcgaggg cgtagagaaa
     3901 tgctgccagc gttttcccgg agccggtcgg tgcaatcacc agcgcatgtt cgcttcgcgc
     3961 cgccacatgc caggtttgcg actggacagc ggtcggctgt ttaaaggcgc gaagaaacca
     4021 gtcgcgggtc gccggtgaaa acacgtccgg caggagcgat gaagggtctg gattatctgc
     4081 cattaacgct attccccgtg aatatcatgc aggatgcgtg gaatagcctc actatagatg
     4141 cctgaatcat tgcatgtcat caggcatcga ctcgattaca cctcttcggc ggcaggtagc
     4201 ggccagcctc ccagacgttt ccagcggttg acgatttcac aaaacagcac agcagtgcgt
     4261 tcggtgtcgt acagcgcgga gtgcgcctgg gtgctgtcga agtccatgcc agcggtctgg
     4321 caagcctttg acaatacggt ttgtccgagt gccagcccgg ccagtgcagc agtgtcaaaa
     4381 gtggcgaaag ggtggaacgg gttacgtttc agtgaggcgc gttctgcggc ggctatcata
     4441 aagctgtgat caaaattggc attgtgcgcc accataatgg cgcggttaca gccgctcgct
     4501 ttaatacctt tacgtacaac tttaaaaatt tcgtgcagcg cctcgtattc gctgaccgcg
     4561 ccacgatcgg gatcgttcgg gtcaatgccg ttgaaggcga gggcttctgg ttgcaaattt
     4621 gcgccgacaa atggttcgac gtggaaatgt aatgtggtgt ccggcatcag ccagccttgt
     4681 tcatccattt tcagggtgat ggcggcaatc tcaagcagcg catcggtttt ggcgttaaat
     4741 ccggctgttt caacatcgat cacaacagga taaaaaccac gaaaacggtc gcacagaccg
     4801 gtaagttgag cgttatcgga catctgattc tcttaatacg gataaattgc agcgcgcatt
     4861 atgacaaata ttacttgtcg atgcagtaaa gatgcgggcg cgatgagttc acgcccggca
     4921 ggagattagt tgcccagacc gcgaccggcg tctttctctt cgattaactc aattttgtaa
     4981 ccgtccggat cttccataaa cgcgataacc gtagtaccgc cttttaccgg acccgcttca
     5041 cgggtcacgt tacccccgtt ttgacggatt ttttcgcacg cttcagcggc gttatctacg
     5101 ctaagcgcga tgtgaccata agcagtgccg agttcgtatt tatccacgcc ccagttgtag
     5161 gtcagttcaa tcaccgcttc ttcggtttcc gggccgtagc caacaaacgc cagtgagtat
     5221 ttgtattccg ggttttcgct ggtacgcagc agtttcatgc ccagcacttt ggtataaaaa
     5281 tcgatggagc gttgcaaatc gccaacgcgc agcatggtat gaagaagacg catcttttta
     5341 tcctcaaaat ggctaacaga ttcaaaatgt tgttttagta tagcggcggc tttacgccgc
     5401 tcgcaatgtt ggattacaac gtcgggtaat cggtatagcc ttccgcgccg ccaccgtaga
     5461 aactttcggc acgctgtggg ttaagctcag ctttgcgctg caagcgggcg accagatccg
     5521 ggttcgcaat ccagtcacga ccaaatgcca ccgcatcaat taaccctttg ccgatcagcg
     5581 tttcagcttt ttctactgtg tatgcacctg cgccgataat cggaccgtgg aaacgggcgc
     5641 gtactttttc gcggaacgca tcagtatacg gttcaccccc cgcccaatct ggttctgaca
     5701 tatgcagata agcaatgccg cgtttaccca gttgttcaat cagatacagt gcatcggctt
     5761 cttcattcgg gccgttatcc gtgttctgga aagtaccgat tggcgaaatg cgaatgccaa
     5821 tgcgatcggc accccattct tcaatcccgg catcgaccac ttccagtacc agacgtgcgc
     5881 gattttccac gctgccgccg tactgatcgg tacgatggtt tgaagaagga gaaaggaact
     5941 gatgcagcaa ataaccgtga gcagagagga gctctaccag atcaaaaccg gcttcacgcg
     6001 cgttagcaat ggcctgacgg aaatcattga cgatacctgg aatctcttct agttcaagcg
     6061 cacgcggcat ggatgtttca acacggatcg cctgaccatt ttcatcgcgc agagaagtac
     6121 gtgttcccgc gctaagtgct gaaggcgcta ccggtgcctg accgccaggt tgcaggctgg
     6181 cgtgagaaat gcgtccggtg tgccacagct acacggccat atgaccattt tcagcatgaa
     6241 cgccagcggt gatttttttc catgcggcaa tttgctccgg actatggatg ccaggcgcac
     6301 ctgcatatcc ttttacctgg gcagaaattt gcgtggcttc actaataatc aaaccggcac
     6361 tggcacgttg gcgatagtat tccgccatca acggggtagg aatgtcaccc ggttcaatac
     6421 tgcgcagacg cgtcagcggt gccataaaaa tacggtttgc cgccgtgatc gcgcccactt
     6481 tcagtgggga atacagtttt tcagatgaca taaaggctcc cggtcgtctg gtgataaaaa
     6541 atgcctgcta aacggcaggc gtcgcaataa tgttttttac atgggccagc gcgttttcca
     6601 gtggctcgaa actgcgcgaa attttggcct gcagattcgc acccagccat agtgcgtaaa
     6661 gcacttgtgc ctgttgtagc ggttcgccac aaaaggttaa acaatggttc tcacggccat
     6721 tttccagcgc ctgagagagc agggcgatca cgccgcgagc acctttatcc atcgcgctgc
     6781 gcatatcttc tgacagatcg cacacttcgg cagagagttt tactgtcagg caaccactga
     6841 tggttccatg ttggcaaaac tggttcagtg tttgctggta ataagccagt atgcggtcgc
     6901 ggtagttacc ttcgccggat tgcagcaact cagtcagtcg ctggtgatat gcggtgtaat
     6961 gacgctcaag catggcaacg ccaaacgctt ctttagagcg aaagtagtga tagaaggacc
     7021 ctttcggcac ttcagcggtt tttagtaatt cgcttagccc catcccggtg aatccacgtt
     7081 gcaggcaaag ttgctcgccc gtcgccagga gatgttcgcg agtatcatgt tcggtgtgtt
     7141 tgttcatgcg ttggagtgta gtagaccagt cggtctagtg caagcaaagt tgctactttg
     7201 gacattaaca gcttcaataa tggtaataat cttatctgag gagggcgaag tggcggagca
     7261 attagagttc tttcccgtcc agagcccgtg ccggggaatt tgccagtctg acgaacgcgg
     7321 gttttgtcgc ggctgttttc gtagtcggga tgagcgtttt aactggaata aaatgagcga
     7381 tggcgaaaaa caagaggtgc tgcgcctttg tcggcagcga ttaatgcgca aattacgcgc
     7441 aaataagcca gcgtcatcag acgaaccgga gcaaccatca ctcttttgaa cctaatcttg
     7501 cgtatactcc tctcatatct gataagagga agcgattatg gttcagcgta ttactattgc
     7561 gccgcaaggc ccggagtttt cccgttttgt gatgggctac tggcgattga tggactggaa
     7621 tatgtccgcc cgccagctgg tcagttttat tgaagagcat ctggatctcg gcgtgaccac
     7681 cgtggaccat gctgatattt atggtggcta tcagtgcgaa gcggcgtttg gcgaggcact
     7741 gaaactggca cctcacctgc gtgaacggat ggaaatcgtc agtaaatgcg gtatcgcgac
     7801 gaccgcgcgt gaagaaaacg tcattggtca ttacatcact gaccgcgatc acatcattaa
     7861 gagcgccgaa cagtcgctaa ttaatctcgc gaccgatcat ctggatctgc tgttaatcca
     7921 ccgaccagac ccgttaatgg atgccgatga agtggcggac gcgttcaaac atctgcatca
     7981 gagcggcaaa gtgcgtcatt ttggcgtatc gaactttacg cctgcgcaat ttgccctgtt
     8041 gcaatcacgt ctgccgttta cccttgccac taatcaggtg gaaatatccc cggtgcatca
     8101 gccgttactg ctggatggca cgctcgacca actacaacaa ctgcgtgttc gtccgatggc
     8161 gtggtcctgc cttggtggtg gtcgtctgtt taatgatgat tatttccagc tgctgcgtga
     8221 tgaactggct gtggtggcag aggagttaaa cgcgggctcg attgaacagg tggtttacgc
     8281 ctgggtatta cgtttaccat cgcagccgct gccaattatc ggttcaggta aaattgagcg
     8341 cgtacgggca gctgtcgaag cagaaacact gaaaatgacc cgtcaacaat ggtttcgtat
     8401 tcgtaaagcg gcactggggt acgacgtacc gtaagcactt ttaggaatag ccgccgttca
     8461 aaaatgtgtc actggtttac acttattcag gaatgcacaa tgaacggagg tcctatgaaa
     8521 cgttttagtc tggctattct ggcgctggtt gttgcaaccg gcgcacaagc tgccagtgaa
     8581 aaagtcgaga tgaacctcgt cacgtcgcaa ggggtagggc agtcaattgg tagcgtcacc
     8641 attactgaaa ccgataaagg tctggagttt tcgcccgatc tgaaagcatt accccccggt
     8701 gaacatggct tccatattca tgccaaagga agctgccagc cagccaccaa agatggcaaa
     8761 gccagcgccg cggaatccgc aggcgggcat cttgatccac aaaataccgg taaacatgaa
     8821 gggccagaag gtgccgggca tttaggcgat ctgcctgcac tggtcgtcaa taatgacggc
     8881 aaagctaccg atgccgtcat cacgcctcgt ctgaaatcac tggatgaaat caaagacaaa
     8941 gcgctgatgg tccacgttgg cggcgataat atgtccgatc aacctaaacc gctgggcggt
     9001 ggcggtgaac gctatgcctg tggtgtaatt aagtaattaa gaggcctgcg taccttgcgg
     9061 tggtgcttgc tcaagttgcg aaagcgagca gtacagccgc cagacaattg ccgccagctc
     9121 acgggcggca ggttgatgat gacgggcaag gctgtcgcaa atccgctgta attcttcaag
     9181 tgtggccgcc agtgattttt gctgaacgcc acgctcactc atcactcccc gcaacagtga
     9241 aatacagtta tcccgtactc gcgataacgg atcggaacgc gattcccagt cgcgcaattg
     9301 ccagacaaca tgagaacagt tcagcagcac tacactccag cgtaataacc aacggcgagc
     9361 cagcgcatcc tggctgttac tcaactgact gacgtgatga taagtgagcg attcaaattc
     9421 gctttcactc agtgttggat ggcggcttag ctgatcgaca aaatcccggc gcagcgcgcg
     9481 aatatggcgg cggcttttac gagcatccga tcctggacgc agaatggcga acgctagcca
     9541 agccagcgca acgccaacga tttttgccag attatcgtta agaaagtcag caaaatcata
     9601 caccggggga ttagtgacag cgataaacga acccataaaa acaatcagtt gcccccacag
     9661 tgcggcaaat ttgggcatct gcaatttaag aagctgcatt gtcgccagca gtggaaagag
     9721 aaacagtaaa aattgccaca gatcgctaat ctggaccatc aggccaaatt tgaccacaaa
     9781 gctgaatagc gaaagtaaca ccagcgtgcg catcagcagt gacaacgact taaacggtgc
     9841 tgcgacggcg gagtagagta cgcagctaat tgctgccagc gttaatgcat tggcaccggc
     9901 atcctattgc gatgcaatac tccatgcgcc aatcatcatc aacgtacaaa atgtacgcag
     9961 cccgctccac ataacttcgg cgttgtcggt atgacgagcc agagcggatg tccgtgcgag
    10021 tctggcatga tcatctacac cgctttgcag acgatgtaat tcctgactac tttgcagata
    10081 aaggcggcaa aaataacgta gtcgctgcca gaaggcgacg tgccggtagt cggcgacgtt
    10141 ggtcgggcgt agcggggcga taatacgtgc gacggtgtaa gcatctgttt gcgaactggc
    10201 gagcgccgtc agcaattgtt cgagaatttc tcgcgtggca cctggcggtg agggccagtt
    10261 gagcaacata cgtcgcaggc tggagatgac actggtcata cgtaattgct ggtggagtag
    10321 cgcattaagg cgcgcgtttt gctggcgaaa acgatagtgg ctccagaaag cctggatacg
    10381 cagcaaattc atggtcagta tctgcccaat ccccccctca tgtgctgcac gaatggcatc
    10441 gtttgtttca ggctgccaga gtaaactggc atgttccagt aatcgggcgt gcatgttttt
    10501 caatgcggtt aaaagggctg tagcatcgga actgctaggc aggatcatca tcatcatgcc
    10561 gccgcacaaa ataccgacta tcacctcgca aacgcgcgcc tgagcgatat cctacagctg
    10621 gctggcctca gtaatattaa ccatcggaaa ggcgatgatg gcagccgtgt agccgccagt
    10681 tgaaatgcat acgcgacgtt attcgtgaag tgcgcacagg cccaggtaca aaagccaagc
    10741 cacgccgaca tgctcaatag aaaaaaccac ggctcattga gcgtatgccc ggcaagaagc
    10801 agtgccgcaa tggctcccag taaactgcca gcgatgcgtc cgaggctttt gctgatgaca
    10861 ccgccaacgg tgggaaagct aaccactgca gccgaggtca tcgcccaata gggttcatcc
    10921 agattcaaat aataggcaac cgtcagcgcc agacacatgg caatggtatt gcgtaacgca
    10981 taacgccatt gcgccagcgt ggccttgaac cagggcaaat tgcgcaagga ccatgacgat
    11041 gcgttcatta ttgacctacg gcaatgctac aggtggtgcc cgacaccagc gtgacatcgc
    11101 ctggaacttt atccagcgca aagcggacgg gaacgcgttg ggcgagacga acccagggga
    11161 cgttaggttt cacatccgga ataaggcttg agtcactttc aacgctttga tcataaatcg
    11221 cccgaccgat actggaaacg tgaccccgta acgttttgtt atcactatag agggtaattt
    11281 gtgctggtgc accttcgcgg atatggcgca acttggtttc ttcaaaataa ccaatgacgt
    11341 aaaacgagtg gctgtcgaca agggcaaaca gcggtttccc ggtgtcagcg taatcgccga
    11401 tgcgggtagt gaggttagtc acccaaccac tcaccggggc gcgaatttcc gtttgcgcca
    11461 gttgccattg tgtctgtttc agcgtggcct gtgcggcatt aacactggcc tgcatcgctt
    11521 taacattgag gttagcggta tcgagttctt cggcagaaat aaaattttgt gagagatgac
    11581 gacgacgatt cgcttcgtta ttggcttttg cgaggtcaga ttgcgctttc gccagctgag
    11641 cctgtgcgtt cagctcggcg atctgaaagg gcgttttatc gatcgtgagc agaagatccc
    11701 ccgcgttaac cagttggttg tcttttatat tcagctcaac aatacgtccc gacacctgtg
    11761 gggtgataga aaccttttct gcgcgtattt tcccgtcgcg tgtccacgga gattgcatgt
    11821 aataattcca cagccaccat ccggcaagaa ccgcaactat cgctacaatg attattgaga
    11881 aatacttaat tgttttaatt gacatagtta ccacgcaatc agtattgcca gagcaaggca
    11941 aacgcaaatc gcaaacagcg ataaatccat ttacaaggga tgccagatgt caccggcgta
    12001 gatccagcca cgaagcaggc ggtgtacgac aagccagatg acgaatccaa acgcgaaggc
    12061 tttgaaaaac ggaggaaaat agacggacgc accgaacacc agatcttgta agggcaatcc
    12121 tgttgcattg agcataaact tcacaaagta gattccttta cgaccgaata tattgcgtta
    12181 gattaataaa tattctttaa gtgcgaaaaa tttacgcgca atttctgaaa aatatgtctg
    12241 acggtaacca aatgcagcaa tacatttgtt ttagcaataa aattgctgca cactattcta
    12301 aaagccgcat aatatcttag caagctaatt ataaggagat gaaattggaa tcgccactag
    12361 gttctgatct ggcacggttg gtgcgcatat ggcgtgctct gatagaccat cgcctgaaac
    12421 cgctggagtt aacacaaacc cattgggtta cgttacacaa tatccatcag ttacctccag
    12481 accagtcgca aattcaactg gcaaaagcga ttggcatcga gcagccatca ctggtccgta
    12541 ctctggacca actggaagaa aaagggttaa tttcgcgtca aacttgtgcc agcgatcgtc
    12601 gggctaaacg tattaaactg acggaaaagg cagagccact gatcagcgaa atggaagctg
    12661 ttattaacaa aacccgcgcg gaaatattac atggcatctc cgcagaggaa ctggagcaac
    12721 tgattacgct catcgcaaaa cttgagcata atatcattga gttacaggcc aaagggtgaa
    12781 atgaaggggg cgtgtggtca gtaacctgac cacacgcaaa cttatttagc gcggagaaac
    12841 ggtcacctga ctgccattgc tggccagtac gacacgttgg cccggagaga aacgagtgtt
    12901 gccttgtttc tgtaccacca tgatggtatt accatcgtct ttacgaattt ccagctcgac
    12961 accctgcgtt ttgttcattg cactctgtac gccctgacca gctacgccac ctgcaacagc
    13021 gcctgctgca gtagccagag aacgcccggt tccgccacca acagtattcc ccaggaaacc
    13081 accaagaaca gcaccgccaa ttgcaccgat aacgttggaa tcatcaccgc cctgaatctg
    13141 taccggacgt acgttaacga tggtgccata gctgacattc tgtacttgtt tcgcttcaga
    13201 agcggtataa acatcccctg acagggtgtc gttattaaca caaccgacaa gagacagacc
    13261 taccattgaa acaaccaata cgcgtttaat cattgaaaaa tctcctgttc accatgaaac
    13321 gccacgcaag catccctcat ggtcaaagta tatggcatat gtgaatccat ggttacatgt
    13381 tctaccaaat atgagcaaat cataatgaaa gtaggatcaa ccaattataa acaaaacatt
    13441 catgatgatt attgatttga agataatgtt ttactaccaa cggtaaaaat cggtcattcc
    13501 gcatggtatt cacgaaaagt ttatgtttga gtggtgcgca aacgtcagat tgaaaaagga
    13561 tgaactatga aatcgggccg ctttattggc gttatgtcag gcaccagcct tgatggtgtt
    13621 gatgttgtgt tggcgacaat agatgaacac cgggtcgcac agctggcaag cttgagctgg
    13681 ccgatcccgg tgtctctgaa acaggctgta ctggatattt gccagggcca gcagcttaca
    13741 ctttcgcagt ttggacagct tgatactcaa ctcgggcgac tttttgctga tgcggtcaat
    13801 gccttgctta aggaacaaaa cctgcaggcg agagatatag ttgcgatcgg ctgtcacggt
    13861 caaaccgtct ggcatgaacc gacgggcgtg gcaccacaca ctttacagat tggcgataac
    13921 aatcaaattg tggcacgcac cggaattacg gttgtcggtg attttcgccg tcgcgatatt
    13981 gccttgggag gacaaggcgc accgctggta cctgcgttcc atcatgcctt gctggctcac
    14041 ccaaccgagc gacgaatggt gctcaatatt ggcggcatcg ccaatctgtc actgctcatt
    14101 cctgggcagc cggttggcgg ctacgatacc ggtcctggta acatgctgat ggatgcctgg
    14161 atctggcgtc aggccggtaa accttacgat aaagatgccg agtgggcacg ggcgggtaaa
    14221 gttattctcc cactgctgca aaatatgctc agcgacccat atttctcgca acctgcaccg
    14281 aaaagcaccg gacgcgaata ctttaactac ggctggctgg agcgccattt acgccatttt
    14341 ccgggtgttg atccccgtga tgttcaggcc acactggcag aactcaccgc cgtgaccatt
    14401 tctgaacaag ttttgttgag cggtggctgc gaacgattga tggtatgtgg tggaggtagt
    14461 cgtaatccgc tactcatggc gcgtctggcg gcattactgc caggcacaga agtcaccacc
    14521 accgatgccg ttggcattag tggcgatgac atggaagcat tggctttcgc ctggcttgcc
    14581 tggcggacgc tggcgggatt accaggaaat ctgccttccg tcactggcgc aagccaggag
    14641 acggtactgg gggctatttt ccctgctaac ccgtgatatc agagttaact gaatttttct
    14701 taccgcgtct gccgttacac ttggaacgtt agggagggcg tattgccctc cagaccagga
    14761 aagtcttcgg gaaatgtcta tgaaaaaact gttactgatc tgtttgccgg tgcttctcac
    14821 cggctgtagc gcgttcaatc aactggttga gcacatgcaa accgctacgc tggaatacca
    14881 gtgtgatgaa aaaccgttga cggtcaaact gaataatccg cgccaggaag tcagttttgt
    14941 ttacgataat caactactgc atctcaaaca gggcatttca gcgtctggtg cacgttacac
    15001 tgacggaatc tatgttttct ggtcgaaagg cgatgaagcg actgtctata aacgcgaccg
    15061 catcgtattg aataactgtc agttacaaaa tccacagcgt tgagattttt ccaggggcgg
    15121 cgcacaatag cgtcacccac tgacaatccg taaagaaaac catgtctgat aacgacgaat
    15181 tgcagcaaat cgcgcatctg cgccgtgaat acaccaaagg cgggttacgc cgtcgcgatc
    15241 ttcccgccga tccattaacc ctttttgaac gttggctctc tcaggcgtgt gaagccaaac
    15301 tggcagaccc taccgcgatg gtggtcgcta ccgtggatga acatgctcag ccttatcaac
    15361 gcatcgtttt actcaaacat tacgacgaaa aaggcatggt gttttacacc aacctcggta
    15421 gccgtaaagc acatcaaatt gaaaataatc cgcgcgttag cctgctgttc ccgtggcata
    15481 cccttgaacg ccaggtgatg gtgatcggta aagcagaacg actttcgact ctcgaagtga
    15541 tgaaatattt tcatagccgc ccgcgtgata gccagattgg tgcatgggtt tcgaagcagt
    15601 ccagtcgcat ttctgcccgc ggtatccttg aaagtaaatt cctggagctg aagcagaagt
    15661 ttcaacaggg cgaagtgcca ttgccgagct tttggggcgg ttttcgcgtc agccttgaac
    15721 agattgagtt ctggcagggt ggtgagcatc gcctgcatga ccgctttttg taccagcgag
    15781 aaaatgatgc gtggaagatt gatcgtcttg caccctgaaa agatgcaaaa atcttgcttt
    15841 aatcgctggt actcctgatt ctggcacttt attctatgtc tctttcgcat ctggcgaaaa
    15901 gtcgtgtacc ggcaaaggtg cagtcgttat atacatggag attttgatgg caagcagtaa
    15961 cttgattaaa caattgcaag agcgggggct ggtagcccag gtgacggacg aggaagcgtt
    16021 agcagagcga ctggcgcaag gcccgatcgc gctctattgc ggcttcgatc ctaccgctga
    16081 cagcttgcat ttggggcatc ttgttccatt gttatgcctg aaacgcttcc aacaggcggg
    16141 ccacaagccg gttgcgctgg taggcggcgc gacgggtctg attggcgacc cgagcttcaa
    16201 agctgccgag cgtaagctga acaccgaaga aactgttcag gagtgggtgg acaaaatccg
    16261 taagcaggtt gccccgttcc tcgatttcga ctgtggagaa aactctgcta tcgcggcgaa
    16321 caactatgac tggttcggca atatgaatgt gctgaccttc ctgcgcgata ttggcaaaca
    16381 cttctccgtt aaccagatga tcaacaaaga agcggttaag cagcgtctca accgtgaaga
    16441 tcaggggatt tcgttcactg agttttccta caacctgttg cagggttatg acttcgcctg
    16501 tctgaacaaa cagtacggtg tggtgctgca aattggtggt tctgaccagt ggggtaacat
    16561 cacttctggt atcgacctga cccgtcgtct gcatcagaat caggtgtttg gcctgaccgt
    16621 tccgctgatc actaaagcag atggcaccaa atttggtaaa actgaaggcg gcgcagtctg
    16681 gttggatccg aagaaaacca gcccgtacaa attctaccag ttctggatca acactgcgga
    16741 tgccgacgtt taccgcttcc tgaagttctt cacctttatg agcattgaag agatcaacgc
    16801 cctggaagaa gaagataaaa acagcggtaa agcaccgcgc gcccagtatg tactggcgga
    16861 gcaggtgact cgtctggttc acggtgaaga aggtttacag gcggcaaaac gtattaccga
    16921 atgcctgttc agcggttctt tgagtgcgct gagtgaagcg gacttcgaac agctggcgca
    16981 ggacggcgta ccgatggttg agatggaaaa gggcgcagac ctgatgcagg cgctggtcga
    17041 ttctgaactg caaccttccc gtggtcaggc gcgtaaaact atcgcctcca atgccatcac
    17101 cattaacggt gaaaaacagt ccgatcctga atacttcttt aaagaagaag atcgtctgtt
    17161 tggtcgtttt accttactgc gtcgcggcaa aaagaattac tgtctgattt gctggaaata
    17221 atgcattaag tggaaagggg gagtgagaaa tcactccccc tggtttttat acagggaaca
    17281 tgatgaaaaa tattctcgct atccagtctc acgttgttta tggtcatgcg ggtaacagtg
    17341 cggcagagtt tcctatgcgc cgcctgggcg cgaacgtctg gccgctgaac accgttcaat
    17401 tttctaatca cacccagtac ggcaaatgga ctggctgcgt gatgccgccc agccatttaa
    17461 ccgaaattgt gcaaggcatt gccgccattg ataaattaca cacctgtgat gccgtgttaa
    17521 gtggctatct gggatcggcg gagcagggtg aacatatcct cggtatcgtc cgtcaggtga
    17581 aagccgcgaa tccgcaggcg aaatattttt gcgatccggt aatgggtcat ccggaaaaag
    17641 gctgtatcgt tgcaccgggt gtcgcagagt ttcatgtgcg gcacggtttg cctgccagcg
    17701 atatcattgc gccgaatctg gttgagctgg aaatactctg tgagcatgcg gtaaataacg
    17761 tcgaagaagc ggttctggca gcgcgcgaac tcattgcgca agggccacaa attgtgttgg
    17821 ttaaacactt ggcgcgagct ggctacagcc gtgaccgttt tgaaatgctg ctggtcaccg
    17881 ccgatgaagc ctggcatatc agccgtccgc tggtggattt tggtatgcgc cagccggtag
    17941 gtgttggtga tgtgacgagc ggtttactgc tggtgaaact gcttcagggg gcaacgctgc
    18001 aggaggcgct ggaacatgtg accgctgcag tctacgaaat catggtgacc accaaagcaa
    18061 tgcaggaata tgagctgcaa gtggtggctg ctcaggatcg tattgccaaa ccagaacatt
    18121 acttcagcgc aacaaagctc tgaaatatct catttcggcc cacaacgacc tgtgggccga
    18181 tggctattac tttaagcctt ccgctgacag tgcgtcttgt acttccggac gttcagccat
    18241 acgttgcata aatgctgcaa tgtgctctaa cccttccaga ttcagtttca ccgcgtatgc
    18301 ccagcgcaga accgtaaaca gataggcatc agcaattgta aatctttgcc cgcagatcca
    18361 gtgctcatcc ttcagtgtct cgttcacata ttgcagcttc ttctccagct gcgcgcgaac
    18421 tgtcggtttg tactcttccg gtgtatcagg gcgaaacaga ggtgtgaaac ctttatgcag
    18481 ctcggtggcg atgtaattca gccattcgat ggttttatag cgggaaatac tgtttaccgg
    18541 tgccagcaac tggcggtcgg ggacgctgtc ggcaagatac tgcataatcg ctacgccttc
    18601 cgtcagcaaa gtaccgtcat ccagcagcaa tgcaggcacc tgccccttag ggttaacggc
    18661 aaagtaatcg tcaccgtttt cgagacgttt tttcattaaa tccacactga cgagggtaaa
    18721 atcctttccg ctctcacgca gggtgatatg ggaagcgaga gagcaggcac ccggtttgta
    18781 gaacaatttc atcggtaact ccttttgtct gtggtttaaa gtatggtagt gcgttgctga
    18841 acaaaaaaaa agccgctaac gaaaagttag cggcttgtaa aagagtttcc ctaaatttta
    18901 cgctacagca gctttcgccg ctttgtctgc agcgtcatcc tgcgtcatac ggtgcagttt
    18961 aggcgcggtc agcagcatca gtactgcaat aatggcagta gcgacaccaa tctgcaagaa
    19021 tacgcgacca taaacttcca gtgacatcag cgggtcggta acgttatccg gcacagccat
    19081 catacccgca acataaccac caatcaggtt tgcaccggca gtggtcagga accagctacc
    19141 cataatgaag cccatcagac gctgcggaac gagttgtgca accattgcca gacccagacc
    19201 agagatcatc agttccccga tgctctgcag gccatagctt gcgaccagcc agcttacaga
    19261 cacgatacca gcgtcagacg cgaatttcgc acccagcggc agaatcagga acgcaccaga
    19321 acacatcacc atgccgattg caaacttggt tggcatcggc agggtatcgc ccatcttgtt
    19381 atagatagcg gccagaatcg gactaccgat gatgatccag aacgggttca gtgcctgata
    19441 ctgctcaggt tctacggcca gacccagaat ggagtgctca acgttacgaa tcgcaaagaa
    19501 gttcagtgac gttggcatct ggctgtacag cacgaagaag ataatggctt cgagcatcag
    19561 gatgaaggca acgatcattt tacgacgcgc agcacctttc atcgcgaagg cttctttacc
    19621 gaagataacc acgataccga aggcaacaac gcccagcgcc atacgcgcaa cttcctgatt
    19681 gtgcagcagc caggtggcga tagcgatcag tgccacaaca ccaataatgg tcagtagcag
    19741 gttacggtag ttgataggct cgaagtctgg ttttgaaccg tactgtttaa cccagcgttg
    19801 gcagaaggcg aagttaacga tagtgatcag caggcctaca acgctcaacg caaacgcaac
    19861 actccagccg tatttcgcgg ccagccacgg cgtagcaatc atagagaaga aagagccgat
    19921 gttgacggac atgtagtaca tggtgaatgc accgtccaga cgcgggtcgt ttttctcata
    19981 gcatgtagaa agcagagaag acgggttagc tttaaacagg ccgttaccga ccgcaatagc
    20041 cgccataccc atataaacga taccggcgtc gtgaccagac caggcaacca gagcataacc
    20101 aatcgccagc acaatagcgc cgagcataat tacgcgttta gtacccagta ccttgtcacc
    20161 taaccagccg ccgatagcga ccagaccata aaccagggca ctaaaggaag agaaaagggt
    20221 gattgaatcc gcttcagaca tacccagttg tttaaccagg taaacagcca taattccttg
    20281 taggccgtaa taaccaaaac gttcccataa ctcaatcgag aagatgagat agaacgcctt
    20341 cggttgtttg aaagcgttca aactgacgct ttcagttggt ttttggtttg cagtggacac
    20401 ttttacctct ttttttacat cccatattaa cgggggtgct ttctcgcgtt atgtctaaaa
    20461 aacatacgcg caattgttat agtgggaggg gaaacggcag gtaatgttca ctatcttgca
    20521 ctttcagaca agtcctttgt aataatctgt tacatataac tgaggcgggg aattcaacca
    20581 ttccgggaaa tgttatccag cgttaaattt ttcaaaaaac gtaacggcag attttttcac
    20641 tgcactgaga gggggatgat ggcttaacgg cgatatgttc tgctatttag cgtttttact
    20701 agtgagatag tccagtttct gaaaaatagc cagtgtaatg ttttgtaggt caatatttgt
    20761 tgcgtgtgta aatttaaatg attttaacct gattcttgca atgtttttac attgcgacag
    20821 catcgtgatc ttgatcacga atgaatagaa aatttcgcta ttaaaaaaac aattaacctg
    20881 catttttggt tatccgcaaa cggattacct gatgataacg ctaagcaatg gcatcattca
    20941 cgttaaaaag atgttttaaa agaggataaa gaaaggttat caatggggta atcggtgtta
    21001 ccccttttct tcagatgtca actttctctt tgtattcaca aagatcttca ataatacaag
    21061 agccacagcg gggcttgcgg gcaatgcagg tataacgccc gtgcaggatc aaccaatggt
    21121 ggcagtcgac tttaaactct gccggaacca ctttcagtag cttttcttct acctgttcaa
    21181 cgtttttccc cggcgcaaat tgagtacgat tacaaacgcg gaaaatgtgc gtgtcgacag
    21241 caatagtcgg ccagccgaat gcagtgttta atacgacgtt ggctgtttta cgacctacgc
    21301 cgggcagggc ttcaagcgca gcacgatctt ccggaacctc gccattatgc tgctccagta
    21361 agatacggca ggttttgatg atattttctg ctttgctgtt ataaagccca atcgttttga
    21421 tataggtttt aaccccttca acgcccagtt caagcatcgc tgcaggcgta ttcgccaccg
    21481 ggtagagttt cgccgtcgcc ttattaacac tgacatcggt cgcctgagcg gaaagcagta
    21541 cggcaatcag caattcaaaa ggcgaactga aattaagctc ggtggtggga tgaggattgt
    21601 tctcacgcag gcgagtgagg atctccaggc gttttgcttt gttcatcaga cattccctgt
    21661 ttcaccgttt ggcaatgcac gttcggcagc tgcttcagta cggcgctttt tcattctttc
    21721 atcaatcagg tattttcctg ccagcatcag tcccaggcca ataaatgcac ctggtggcag
    21781 catcgccagc aggaaagggg agtcggtgtg gaaaatctcc acgcgtaata cttttgccca
    21841 gctacctaac agcgcatctg caccgtcaaa caatgtgcca ttgccgataa tttcgcgtag
    21901 tgaacccagc acgaacatgg cgcaggttgc gcccatacca attgaaaagc cgtccagtgc
    21961 cgaaagcgcc ggaccttttt tggcggcgaa ggcttcagcg cggcccacaa cgatacagtt
    22021 agtgacaatc agcggaataa aaatccctaa tgattgatac aggccaaagg cgtaggcgtt
    22081 gatcagcatc tgtacagcgc tgaccaccga ggcgatgatc atcacgtaaa tgggaatgcg
    22141 gatctcggct ggcgtccagt gacgcagcgt cgaaatggtc aggttggtca gcgtcagtac
    22201 cagcgtagtc gcaagtccta aacccagagc attagtggca gtggacgtga ccgccaacag
    22261 aggacaaagg ccgagcaact ggaccagcgc agagttgttt ttccacaacc cctgaacaat
    22321 aacgtcttta atttcgctca cgctttattc tccacaggca ggaagttgag aaagttgtgc
    22381 cggtaacgtc tgagcgtaca atccggcgcg ttttaccgca ttaaccaccg cgcggggagt
    22441 aatcgtcgcg ccggtgaact ggtcgaaatc accaccatct ttcttcaccg cccagtgcgc
    22501 atcatccgca ccactgattt ttttacccgc aaaatgggtg atccagtcag aaaggcgcag
    22561 ttcgatttta tcgccaagcc ctggcgtttc gtggtgctct gtcacgcgcg tgccaagtac
    22621 cgtgccgtta aaatcggctc ccaccagcag ctgaatcgca ccggaatagc catctggcgc
    22681 ggttgcttcc agaacggcgg ctaccggttt gtcatcctgt ttggcgatgt aaacccgatg
    22741 ctcaccttta cctaactctg gcgcagttac cagatagcaa ctctgtgcca gcgcattgtt
    22801 atagcgttcg gctggcagca cctgatcaaa taatgccttt tgttgcagac ttgcctgttc
    22861 agcaatcgtc gttttggtca tctggttgat ggccgcagtt aaccctgttg aacccgctgc
    22921 aaatagcgct aacgtaatgc cgtgttttcg gatagttttc agcatggttt accctttgcg
    22981 atggccgtag acgcgcggac gcgtgtagta atcgatcaga ggaaccgtga tgttcgccag
    23041 caggacggca aaagccacgc cgtcaggata gccgccgaaa ctgcggatca accagactaa
    23101 taagcccgca agcgcgccga aaataagacg accacgattg gtcgtagaag cggtaaccgg
    23161 gtcagtcaaa ataaagaatg cgccgagcat ggtcgcacca gacagcagat gaatttgcgg
    23221 tgctgccagt gtttctggtg agaacaacca gcccaacgtt gcgcataacg ccagcgttac
    23281 taagaagctg aggggaatat gccagcgaat cgctttctgc catagcaacc acaggccgcc
    23341 agccagccag gcgagattta cccattgcca accagcgccc gccagaatac cgctgtagat
    23401 cggatattgc ataatctgtt caaccgaatg accggcacgg acagaggttt taaatgtatc
    23461 cagcggtgtc gcctgactaa tgccatcaat acctaagtgt agtgtgttca tatcagcacc
    23521 actggcggta tgcccgctga aaataacctg tatggcgtcg ataaaaccag ggatgttgac
    23581 cgcaatttca tgtggcggta accagctggt catctgcacc gggaaggaga tcagtaagac
    23641 cacataacca atcattgccg gattaaacgg gttttgcccc agaccgccat acaactgttt
    23701 agcgatgatc accgcaaaca ccgtacccag cacgaccatc caccatggcg cgaggggggg
    23761 aatacttacc gccagcaata agcctgtcag caatgctgag ttatctttca acgttgcggc
    23821 taccgactgc ttgcgtagtt tgagtacgag agcttcggct aacagagtac taaccgatgc
    23881 caacaggatc tgaacgagag taccccaacc aaaaaaccac agttgcgctg cgattcctgg
    23941 cacggctgcg agcaacacca acagcataat gcgcgatgtc tggcgctggt tatgggtata
    24001 aggggagcta gctattctga ataccattta gtcctcgttt acaacctttt gctgggcggc
    24061 ttttttggcc tgagcgcggg caatagccgc ggcaactgcc gctttgcgcg gatcaacctg
    24121 ttcttctggt tctgcgttag tctgttgctg ttccagcttg cgcgctttgg cacgggcaat
    24181 agcggcttcg acggcggctt tgcgcggatc aacctgttct tcaggtaccg cattagcctg
    24241 ttgctgttcc agcttgcgtg ctttggcgcg tgcaatagcc gcttcgacgg cagctttgcg
    24301 cggatcaacc tgttcttctg gctccgcatt agcctgttgc tgttccagtt tgcgcgcttt
    24361 ggctcgggca atagcggctt cgatggcggc tttgcgcgga tcaacctgtt cttctggttc
    24421 cgcattagcc tgttgctgtt ccagcttgcg cgctttggca cgggcaatag cggcttcgac
    24481 ggcggctttg cgcggatcga cctgttcttc tggttccgca ttagcctgtt gctgttccag
    24541 cttgcgcgct ttggcgcggg cgatagctgc ttcaacggca gttttacgtg gatcagcaac
    24601 ggttgctgcg tcgttagttt gctgcagttc tgcctgtttc gctctggctt gcgctttacg
    24661 ggcttcccgt gctgcaataa ttgcactgtt atccgggcgt tcgcccgctt taatcacaat
    24721 aggctgtgta gcctgggcct gtttctcttt cacccgcgcc agagcggcag caatcgcatc
    24781 tttatctttg gctgcaggtt gaacggctgc gctcttatgt cgttcaaggc gagccgcttt
    24841 ttcgcgctcc agacgagcct ggcgcgcttc gaaacgcgct ttggcttctg cggcgcgctt
    24901 ttcttcctga cgaatagccg caatttcagc tttttcctga cggaaatatt gcaccagggg
    24961 aatattgctc gggcaaaccc acgcgcaagc cccacattca atgcaatcag caatgttatg
    25021 cgtggtagct ttatcgtgtt gctgaccttt gctgaaccag tacaactgtt gcggcaaaag
    25081 atccgcaggg caggcgtcag cacaggcgct acaccggatg cagctttgtt cttcctgtgg
    25141 ttcgccaagt tcattggcag agggagccaa cagacagttg gtaatcttta cgaccgggac
    25201 atccagccat ggcaaggtaa agcccattag cgggccaccc ataatcacca tttgatcggc
    25261 agaggggcag aatcgggcat cattcaataa atgacgcact ggcgtcccca gccgtgccca
    25321 gacgttgccc gggcgagcga ttgcttcgcc agtcagggtt acaacacgct cggtaatcgg
    25381 ctcgccatca ataacggcac gtttcactgc ataagcagtg ccgacgtttt gcattaatac
    25441 gccgatatcg gatgaacgcc cgccatgtgg aacctgcttc ccggtcagaa tgtaggttaa
    25501 ttgtttagca ccgccagaag gatatttggt tggaatcacc cgcagagaaa tatcgttaga
    25561 gtccgccagc accgcgcgca gcatggaaat cgcctgcggt ttgttatctt caatgccgat
    25621 aagaatttcg cgtggctgca gaatatgcgc aagaatgcga ataccctcta cgacctgagc
    25681 cgcgcaatcc tgcatcaaac ggtcatcggc ggtaatgtac ggctcgcact cagccgcgtt
    25741 gataatcaac gtttcaatct tatctccgcc accctgcaat ttaacgcctg tcgggaatcc
    25801 tgcaccgccc agcccggcaa caccaaactg atgtatgcgc tcgattaact cttcgcgact
    25861 acgagtgcga taatcggccc agccgtcgcg cgggatccag cagtcttcac catcggcatc
    25921 aataatcacg cttaattcag ctaaagctga aggatgagcc gtagagtggg gcgcaatagc
    25981 cgtaacggta cccgaggtgg gcgcgtgaac aggcagcatt ttgccgcgac cacgggtaag
    26041 cggctggccg cgcaatactt tatcgccgac gctaacgcac aactcacctt cagcgccaat
    26101 atgctgtttc agtggaataa caaaacgctg cgccagtggt acctggcgca ggggggtacc
    26161 gttggactgg gttttcatct ccggtggatg gatgccgccg ttgaaatccc agattttatt
    26221 ttttctgaat gcagagaata acttaagcat ggtgttccac gggaatgata cgcacgggaa
    26281 tggtgttcag atcccatttc caggagtcag gtgtttctgc gaccggttgc aacgagatgc
    26341 agtgcgtcgg gcacggatca acacataaat tgcagcccgt acagagatca ctcattaccg
    26401 tatgcatggc acgggtagcg ccaacgatgg cgtctaccgg acaagcctga atacatttag
    26461 tgcagccaat acagttattt tcatcaataa ccgccaccat ccgcgcaggc gttagctctt
    26521 gcgcttcgcc atccagcggc tgcggctcga cattaagcaa ctcggcaatt tttagcatca
    26581 cagcttcgcc acctggggcg caacggttga ttttttcacc gttacagctg atggcttccg
    26641 cgtaggggcg acagccggga taaccgcact gaccacactg gctctgcggt aagatttcgt
    26701 caattttctc aacgaccgga tcgtcttcca ccgcaaaacg gcgggaggca taacccagaa
    26761 tggcgccaaa cgccaggccc agcaggctca cggcggcaac ggcaatccag atagcattca
    26821 ttacaacttc accaaaccac taaagcccat aaaggccaga gacataagac ctgcggtaat
    26881 taacgcaatg gcattaccgc gaaaaggtgc cgggacatca gccacagcaa ggcgttcgcg
    26941 gatggcggtg aagagcacca tcaccagcga gaaaccgaca gcggcggaaa aaccgtacag
    27001 cgccgactgc aagaaattgt gcccgagatt gatattcagc aacgccacgc cgagcactgc
    27061 acagttggtg gtgataagcg gcaaaaaaat ccccagcaga cggtaaagca ccgggctggt
    27121 tttgcgcacc accatctcgg tgaactgcac gaccacagca atcaccagaa taaatgccag
    27181 ggtgcgcagg taaatcagat taagtgggat caaaatccac gtatcgataa gccaggcgca
    27241 aatagacgcc agcgtcatca caaacgttgt tgccagcccc atgcccatcg cggtttccag
    27301 ttttttggaa acccccataa acggacagag accgagaaac ttgaccagca caaagttatt
    27361 gaccagtata gttccgacaa acagtaacag gtagtcagtc atttttcggc ctgaaataaa
    27421 aaagccgcct attatccgtt aatccagagc aggcgacaac aggttaactg taaggttatt
    27481 acggattcac aaacgtcgct tttacccgcg acgagcgttt gaaataggag acgatcaatg
    27541 cggttgccaa caaagtaaac agcaactggc gaacggctat gccatcttcc acgggtgaaa
    27601 aagcgaatgc ttttactgcc agcaatacgg aaataagcag ccagataata tagtgtttag
    27661 gaacacaacg ccgacgttta aagaaagcga tggtcaacca cagtgtgtaa taccacatgg
    27721 cgatagcggt aataaaagaa acgccccata agatttgtgt cgtcagtgct tgtccgccga
    27781 gcgtttgaaa tgtttgcgga gaagataacg cagcggtata cagcaacaac gccagcgtcg
    27841 tactcaatag agcgactaaa agccaggcca acgggccaag caaccagcct ccaatacgtt
    27901 gtggcgttgt ggtggtcata ggttctccag aatagcgacg caaacaggca aatctaattt
    27961 taggggcgtt attataaggc ttttataacc gatcgctact ttctttattg gacatagtgc
    28021 cagacggact tcggtacctg gccgaggtca aacaaacgcc cgccagaaac cagctctgcg
    28081 cgacggtgat cggcagcacg atacatattg atcagttcct gatcgtccgt cagggtgtaa
    28141 ttaagatggt cgtagagttt ttccagactt tcgagtgaac tgattttgcg aaattttaat
    28201 aagtagtcct gaacagtcat aaaaggtcca taaaataatt aataccaaag gggtaggtat
    28261 tattagtgat gataaaattt caccaaaagt gaacgcttgt gttattacaa taataagaat
    28321 gcgctgatgg caaatattca gggatgaaaa actgctctga aaagagcaac gcgctttact
    28381 atccctgaca atcaccaaca acatcgaaca agataataaa ttcctggttt aatatccgac
    28441 aagtgaaaac atgcaaccgg acgggcagca tggcgctcta caagcgcaga gcttacttgt
    28501 gttgtaccga agcactctgt tcaggtggct gatagttgtc aatgtgactc gccacgccaa
    28561 gaagaatgac tgaaacgaca agaacgatcc aacctgttaa ttcaataaga cgattcatta
    28621 cagcccacat ctctcttgat tgatccatta acttcagggg gtaaatgtta cttagcaata
    28681 atagctccag caagattttt actgaggttt ttgcgatatt tagcttttgt cgttggaaaa
    28741 ttcgctattt ttttgactta atattaaact gttgagcgtg ggtaaaggat agtgtcaaat
    28801 agcaatcata cttcaatgag aggcaatgac atgagcgaca acatccgtgt tgggttgatt
    28861 gggtatggtt atgcgagcaa aaccttccat gcgcccctga ttgcgggcac gcccgggctg
    28921 gaactggcgg taatctccag cagtgatgaa acaaaagtaa aagccgactg gccaacggtt
    28981 acggttgtct ctgagccgaa gcatctgttt aacgatccca acatagacct gattgtcatt
    29041 cctacaccca acgataccca tttcccgtta gccaaagcgg cgcttgaggc gggtaaacat
    29101 gtggtcgttg ataaaccctt taccgtgaca ctgtcacaag cgcgagagct ggatgcgctg
    29161 gcaaaaagcc tggggcgtgt gctgtctgta ttccataacc gtcgttggga tagcgatttc
    29221 ttgacgctaa aaggtttgct cgcggaaggc gtgctgggtg aagttgctta ctttgagtct
    29281 cattttgacc gcttccgtcc gcaggtgcgc gatcgttggc gtgaacaggg cggcccaggc
    29341 agcggtatct ggtacgattt agcaccgcat cttcttgatc aggccattac gctatttggt
    29401 ttaccggtca gcatgacggt agatttggca cagttacggc ccggagcgca gtcgaccgat
    29461 tatttccacg ccatcttgtc ctatccacag cggcgagtca ttttacacgg taccatgctg
    29521 gcagccgctg agtcagcacg gtatatcgtg catggatccc gaggcagtta tgtgaaatat
    29581 ggcctcgatc cacaggaaga acgtctgaaa aatggcgagc gtctgccgca ggaagactgg
    29641 ggctacgata tgcgtgatgg cgtacttacc cgagtggaag gtgaggaacg tgtcgaagaa
    29701 acgctgttga cggtacctgg gaattatccg gcttactatg cggctattcg tgatgcgtta
    29761 aatggcgatg gtgaaaatcc ggttccggca agccaggcaa tccaggtaat ggagttgatt
    29821 gagctgggca tcgaatccgc caaacatcgc gcgactttgt gccttgcatg aaaaatggat
    29881 ggtgcaattt gcaccatcca ttttgttact tcgcggcgac tttttctcgc agtgcgcgtt
    29941 tttcctcagc gctgaggaaa gccatttcca gaccattaat ctgtgcttgg cggatttgct
    30001 cgcgggataa cccagcagct ggcgcggcaa cggtatattc gtgaatgata tccactccct
    30061 gtacgccggg atcgtcagtg ttaatgccgg cacgaatgcc atgctcaagg aacgttttca
    30121 gcggatgtgc agccagctct gctacggtgc tggtctgaat attggaggtc agacaggatt
    30181 caataccaat ttgttgctcg gcgagaaaat ccatcagcgc ccgatcttca atggctttta
    30241 cgccatgtcc aatacgctcc gcacccagtt cacgaatcgc ctgccagatg ctttccggcc
    30301 cggcagcttc gcctgcatgg acggtaatat gccagcccgc atcacgcgca aggttgaagt
    30361 gagaaaggaa cagacttccc gggaaaccaa gttcatcacc ggctaaatca agggcggtaa
    30421 tctggtcacg gtgggctaaa aaggcctcca gctcttgctg acaggcggct tcgccgaagg
    30481 ttcggctcat aatgccgata agcttcgcct gcacaccaaa agtgcggcaa ccttcacgta
    30541 cgccatcgat caccgcttcg acaacacccg ctacaggcag cttatgtgcc attgccatgt
    30601 agcctggtga aaaacgcagc tcgacatagt gcaggccgtt acgggctgca tcttcaatgt
    30661 tttcaaatgc cacgcggcgg caggcatcaa gagaggcgag aactttaacg ccccagtcaa
    30721 gtttggtcag aaagctcacc agatcgggtt cgttggcaat gacctgaacg tggggaatca
    30781 gtgtttccag ggattgtgca ggaagcgaga tattatactg gcggccaagt tcaagaatgg
    30841 tctggggacg aatgttgcca tcaaggtggc gatggatatc agttaatggc agggtggtat
    30901 caatcatggt cgcactcttt ttctggatat aaaagtgcgc accattataa aaacaaagca
    30961 gggtaaaaat ccacgattgc gcaacgattt ttacgttgcg caattggggt taacgaacag
    31021 cgcggatggc gttaattaat ccagccacac ctttttccag tttcgaacgt gggcagccgg
    31081 cattgagacg gacaaaacca cgaccttctt caccgtaggt ataccccggc atgatcgcga
    31141 ctttttcttg ttcgataagt gctttttgca acgcgttgtc gtcaatattc aacggacgta
    31201 aatcaagcca tgccagataa gtggattgtg ggatctgcca gttgagttca ggaaacgcgg
    31261 cgttcatttt atctgcgata tacgtcaggt tatctttcag atagatgcgt aaggcatcca
    31321 gccacggcgc gccttgctga taggcggcga tatgggcagt taacgccagt accgaagggg
    31381 aagaaagccc atcacggcct ttcagtgccg ataaataggc atcgcggcta ctgctatttt
    31441 ctataatccc gtaagcaccg gtcagggcgg gaatattgaa acttttcgag cccgacgtta
    31501 gcaacgccca gtctccgcga gccacattac tccagggaat atgcggctgc tcgccccaaa
    31561 ccatatccat atggatttca tcggaaataa cccgcacacc atgacgctcg cacaggtcag
    31621 ccatgatctc cagctcatcg cacgtccaca ctttcccggt aggattctgt gggctacaca
    31681 ggagcataat tttacattct ggtttcgcca acacggcttc caacttgccc atattgcaaa
    31741 accaaccatc agcctgcttc tctaaagcaa cgggcattac tgtgcgctgg ttaccttcaa
    31801 tggccttgta aaatgcgtca taggcgggtg tgtggatcac cacgccttca cctgtttcag
    31861 accactgacg aatcagttct gaaaccatat agatgacaga agggccatac accaccgtct
    31921 gagaatcgat ggcggtgtaa tgctgggtgg aaaaccagtg ggcaatagca gcgagaaact
    31981 catcgttttt ccagcggctg tagccaaata cgccgtgcat caggcgctga ttcagcgcct
    32041 ctataatgca gggggcagtg gcaaaatcca tgtctgaaat cgtgaacggt aacaggtcag
    32101 cagtgccgaa acggtcagcg acataatccc actgtgtaca ccatgtgcca tgacgatcca
    32161 cgacctttga aaaatcgaac atatcttatc cttatgcctg gacagtatgc atcagaccgg
    32221 ccatttcatc ttttactgac tgaacttgtg gcccgataac aacctgcagg ttatgttgat
    32281 taagttgtac tacgccaatt gcccgattgt ccttcagtgc ctgcacatta acaagcgaca
    32341 tatctttcac agacaaacgc agacgggtaa tgcagttatc gaggctgaca atattgtcgg
    32401 caccgcctaa tgcttcgagg attgcaggaa cgttgtaacc tgatttaccc ggcgcagcgg
    32461 caacggcttt ttcgattgag ctggcaactt cgctatcgcg ccccggggtt ttgagattga
    32521 agcgggtgat agcgaaacgg aagatggcgt agtaaacgac aaaccagatt gccgccacca
    32581 ctggcaccat gtaccacttg gttgacagac catgcaaaat accgaacacc acgaagtcga
    32641 tgatattgcc gtcggtatta ccgatggtga cgccgagcac agacatgacg gtgaagccga
    32701 ggccggttaa cagcgcgtgg atgacataca gaactggcgc tacgaacagg aacaggaatt
    32761 ccagcggttc ggtagtgccg ccaacgacgc aggcgatcag gccagaaatc agcagacctt
    32821 taattttatg gcgattttcc gggcgcgcgc agtgatacat agctaacgct gcagctggca
    32881 gaccgccgag aaacgcaggc attttacctt gcgaaaggaa acgcgtggcg ctttcagaaa
    32941 aaccgtgagt ggtcgggcaa ctcaattgcg tctggaagat ggtcagtgcg ccgctgacgg
    33001 tttgaccgca gacttcctgc gtgccgcctg cgtcggtaaa gcgaattaat gccaccagaa
    33061 tgtgatgcag accaaacggc aacagcagac gttcaccggt accaaacagc atcggtccga
    33121 aatcacccgc gctgtttatc atatggccca agccgctaat acccatggcg aaaatcggcc
    33181 agactaatgg aatcaccagg ccgacaaggc ccatcaccag cgaggagata attggtacga
    33241 agcgcgtacc gccgaagaat gccagcgcat ccggcaggcg gatattatgg aaacgctcat
    33301 gcagcatcca gacgataata ccggcgatca ccgcaccgag gatcccggta tcgatcgact
    33361 ggatcccaag aatgctctgg atgttattgg ctttcagaac cgcggcatcc gtggttggca
    33421 gaatgccttt attggtcaac cagaagttta ccgcgaggtt cattaccgca taaccgacga
    33481 agccagcgaa tgccgctacg cctttatttt cgcgtgccag gcccagcggg atggcgatac
    33541 agaacatgac aggcaggaaa ctaaaagcaa acgagccaat cttactcatc caggtaaaga
    33601 tagcctgcaa cacggggttg cccaggaccg ggatcagggt tatgacatca tggctgctaa
    33661 gagaactacc aatgccgagc ataatgccgc agaacgacaa taatgccacg ggtaacatga
    33721 aggttttgcc taactgctgg aagaactccc acagcgtgac tttcggtgct gttttcgccg
    33781 tcataaaacg actcctcgta gagaacaatc tggattcagt aaattgcgcg agaagataaa
    33841 acgttttatc aaattttagt gaggcataaa tcacattacg caacgataat agcgggtata
    33901 agataaataa aaggtaaaac gttttatctg tcacataatc agggagtagg tcatctgcat
    33961 ggctaccgcc aaaaaaataa ccattcatga tgttgcgctg gctgcgggcg tgtcggtaag
    34021 taccgtttcg ctggtgctta gtggcaaagg gcgaatctct accgccacag gagaacgcgt
    34081 taacgccgcc attgaagagc tgggatttgt gcgcaatcgc caggcgtcgg cgctgcgcgg
    34141 cgggcaaagc ggcgtcattg gtttgatcgt ccgtgattta tctgcgccgt tttacgccga
    34201 attgacggcc ggattgacgg aagctctgga agcgcaggga cggatggttt ttttgcttca
    34261 cggcggtaaa gacggcgagc agctggcaca gcggttttca ctgttactga atcagggggt
    34321 cgatggtgtg gtaattgccg gggctgcagg aagcagcgat gacctgcgac ggatggcaga
    34381 agaaaaagct atcccggtga ttttcgcttc ccgtgccagt tatcttgatg atgttgatac
    34441 ggttcgcccg gacaacatgc aggctgcaca gttgttgacg gagcatctca ttcgcaatgg
    34501 gcatcagcgg atcgcctggc tgggagggca aagttcctca ttaacccggg cagaacgggt
    34561 gggaggctat tgtgcaactc tactaaaatt tggtctgccg tttcacagcg attgggtgct
    34621 ggagtgcaca tccagccaga agcaagctgc ggaagctatc acggcgcttt tacgtcataa
    34681 cccgaccatc agtgctgtgg tttgctataa cgaaactatt gcgatggggg catggtttgg
    34741 tttgctgaaa gcagggcggc aaagcgggga aagcggagtc gatcgttact ttgagcaaca
    34801 agtttcgctg gcggcattta ccgatgcgac accaaccaca cttgatgata tacccgttac
    34861 ctgggccagc acgcctgcgc gggaacttgg taccacactt gcggatcgca tgatgcaaaa
    34921 aatcacccat gaagagacgc attcacgcaa tcttattatt cccgcccggc tcattgcagc
    34981 gaaataatcc tctctttatc tgctatacct ggtagtgtcc tttcctcaag gttaatgata
    35041 aaaaatgtgg cacacagg
//
LOCUS       DAJVUY010000023        34977 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.023, whole genome shotgun sequence.
ACCESSION   DAJVUY010000023 DAJVUY010000000
VERSION     DAJVUY010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34977
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.023"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1234
                     /gene="dsdA"
                     /locus_tag="OQQ72_001030"
     CDS             <1..1234
                     /gene="dsdA"
                     /locus_tag="OQQ72_001030"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HCS2010836.1"
                     /translation="TSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFAETAATGGI
                     IESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLA
                     LEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSA
                     DARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSV
                     AGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTH
                     SPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLSDQ
                     TMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWAT
                     GGGMVPEEEMNQYLAKGR"
     gene            complement(1342..2880)
                     /gene="emrY"
                     /locus_tag="OQQ72_001031"
     CDS             complement(1342..2880)
                     /gene="emrY"
                     /locus_tag="OQQ72_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HCS2010837.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2880..4043)
                     /gene="emrK"
                     /locus_tag="OQQ72_001032"
     CDS             complement(2880..4043)
                     /gene="emrK"
                     /locus_tag="OQQ72_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HCS2010838.1"
                     /translation="MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYVYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4459..5073
                     /gene="evgA"
                     /locus_tag="OQQ72_001033"
     CDS             4459..5073
                     /gene="evgA"
                     /locus_tag="OQQ72_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HCS2010839.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5078..8671
                     /gene="evgS"
                     /locus_tag="OQQ72_001034"
     CDS             5078..8671
                     /gene="evgS"
                     /locus_tag="OQQ72_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HCS2010840.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYQFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8727..9872)
                     /gene="yfdE"
                     /locus_tag="OQQ72_001035"
     CDS             complement(8727..9872)
                     /gene="yfdE"
                     /locus_tag="OQQ72_001035"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HCS2010841.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9946..10890)
                     /gene="yfdV"
                     /locus_tag="OQQ72_001036"
     CDS             complement(9946..10890)
                     /gene="yfdV"
                     /locus_tag="OQQ72_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HCS2010842.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIVYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10960..12654)
                     /gene="oxc"
                     /locus_tag="OQQ72_001037"
     CDS             complement(10960..12654)
                     /gene="oxc"
                     /locus_tag="OQQ72_001037"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HCS2010843.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSSVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12708..13958)
                     /gene="frc"
                     /locus_tag="OQQ72_001038"
     CDS             complement(12708..13958)
                     /gene="frc"
                     /locus_tag="OQQ72_001038"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HCS2010844.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAAVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14471..15103)
                     /locus_tag="OQQ72_001039"
     CDS             complement(14471..15103)
                     /locus_tag="OQQ72_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HCS2010845.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15399..15674
                     /locus_tag="OQQ72_001040"
     CDS             15399..15674
                     /locus_tag="OQQ72_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010846.1"
                     /translation="MKVNLILFSLFLLVYIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15751..15993)
                     /locus_tag="OQQ72_001041"
     CDS             complement(15751..15993)
                     /locus_tag="OQQ72_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HCS2010847.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTEIFMFLAPACGLMIRFMVGYGRR"
     gene            16346..17266
                     /gene="lpxP"
                     /locus_tag="OQQ72_001042"
     CDS             16346..17266
                     /gene="lpxP"
                     /locus_tag="OQQ72_001042"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HCS2010848.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17622..17693
                     /gene="ypdK"
                     /locus_tag="OQQ72_001043"
     CDS             17622..17693
                     /gene="ypdK"
                     /locus_tag="OQQ72_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HCS2010849.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17758..18996)
                     /gene="alaC"
                     /locus_tag="OQQ72_001044"
     CDS             complement(17758..18996)
                     /gene="alaC"
                     /locus_tag="OQQ72_001044"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HCS2010850.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19373..21070
                     /gene="ypdA"
                     /locus_tag="OQQ72_001045"
     CDS             19373..21070
                     /gene="ypdA"
                     /locus_tag="OQQ72_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     YpdA"
                     /protein_id="HCS2010851.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGIIGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21085..21819
                     /gene="ypdB"
                     /locus_tag="OQQ72_001046"
     CDS             21085..21819
                     /gene="ypdB"
                     /locus_tag="OQQ72_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator YpdB"
                     /protein_id="HCS2010852.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21832..22689
                     /locus_tag="OQQ72_001047"
     CDS             21832..22689
                     /locus_tag="OQQ72_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2010853.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNSQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22692..25187)
                     /gene="ptsP"
                     /locus_tag="OQQ72_001048"
     CDS             complement(22692..25187)
                     /gene="ptsP"
                     /locus_tag="OQQ72_001048"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS2010854.1"
                     /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA
                     DAKSSLALIGTGTLFNDSCSLNISGSDEEQAQRVLEEYIQVRFIDSDSIQPTQAELTA
                     HPLPRSLSRLNPDLLYGNVLASSVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA
                     TLAEQLNQQLRESDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ
                     VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQ
                     FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG
                     VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPG
                     AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS
                     IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI
                     LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT
                     QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL
                     LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED
                     VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG
                     FGVAIPHTKSQWIRHSSISIARLAKPIDWQSEMGEVELVIMLTLGANEGMNHVKVFSQ
                     LARKLVNKNFRQSLFAAQDAQSILTLLEIELTF"
     gene            complement(25212..26249)
                     /gene="ypdE"
                     /locus_tag="OQQ72_001049"
     CDS             complement(25212..26249)
                     /gene="ypdE"
                     /locus_tag="OQQ72_001049"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS2010855.1"
                     /translation="MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGS
                     VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR
                     EECKIPGLLDGDRQGNDVSAMRVDIGTRSYDEVMQAGIRPGDRVTFDTTFQVLPHQRV
                     MGKAFDDRLGCYLLVTLLRELHSAELPAEVWLVASSSEEVGVRGGQTATRAVSPDVAI
                     VLDTACWAKNFDYGAANHRQICNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD
                     MFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIKRLT
                     RETVVQLTDFR"
     gene            complement(26249..27334)
                     /gene="ypdF"
                     /locus_tag="OQQ72_001050"
     CDS             complement(26249..27334)
                     /gene="ypdF"
                     /locus_tag="OQQ72_001050"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS2010856.1"
                     /translation="MTLLASLRDWLKEQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSSYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27349..28596)
                     /locus_tag="OQQ72_001051"
     CDS             complement(27349..28596)
                     /locus_tag="OQQ72_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HCS2010857.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGVIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28618..28944)
                     /locus_tag="OQQ72_001052"
     CDS             complement(28618..28944)
                     /locus_tag="OQQ72_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HCS2010858.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29163..30128)
                     /gene="glk"
                     /locus_tag="OQQ72_001053"
     CDS             complement(29163..30128)
                     /gene="glk"
                     /locus_tag="OQQ72_001053"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HCS2010859.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30332..31588
                     /locus_tag="OQQ72_001054"
     CDS             30332..31588
                     /locus_tag="OQQ72_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCS2010860.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTINIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31703..32029
                     /locus_tag="OQQ72_001055"
     CDS             31703..32029
                     /locus_tag="OQQ72_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS2010861.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32170..33408)
                     /locus_tag="OQQ72_001056"
     CDS             complement(32170..33408)
                     /locus_tag="OQQ72_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HCS2010862.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33744..34946
                     /gene="nupC"
                     /locus_tag="OQQ72_001057"
     CDS             33744..34946
                     /gene="nupC"
                     /locus_tag="OQQ72_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HCS2010863.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9229 a         8684 c         8070 g         8994 t
ORIGIN      
        1 gacctcattg gctgaaggtt taccttatgt tggcctgacc gaacaggatg ttcaggacgc
       61 ccatgcgcgc ttatcccgtt ttgcacccta tctggcaaaa gcatttgctg aaactgctgc
      121 cactgggggg attattgaat cagaactggt tgccattcca gctatgcaaa aacggctgga
      181 aaaagaatat cagcaaccga tcagcgggca actgttactg aaaaaagata gccatttgcc
      241 catttccagc tccataaaag cacgcggcgg gatttatgaa gtcctggcac acgcagaaaa
      301 actggctctg gaagcggggt tgctgacgct tgatgatgac tacagcaaac tgctttctcc
      361 ggagtttaaa cagttcttta gccaatacag cattgctgtg ggctcaaccg gaaatctggg
      421 gttatcaatc ggcattatga gcgcccgcat tggctttaag gtgacagttc atatgtctgc
      481 tgatgcccgg gcatggaaaa aagcgaaact gcgcagccat ggcgttacgg tcgtggaata
      541 tgagcaagat tatggtgttg ccgtcgagga aggacgtaaa gcagcgcagt ctgacccgaa
      601 ctgtttcttt attgatgacg aaaattcccg cacgttgttc cttgggtatt ccgtcgctgg
      661 ccagcgtctt aaagcgcaat ttgcccagca aggccgtatc gtcgatgctg ataaccctct
      721 gtttgtctat ctgccgtgtg gtgttggcgg tggtcctggt ggcgtcgcat tcgggcttaa
      781 actggcgttt ggcgatcatg ttcactgctt ttttgccgaa ccaacgcact ccccttgtat
      841 gttgttaggc gtccatacag gattacacga tcagatttct gttcaggata ttggtatcga
      901 caaccttacc gcagcggatg gccttgcagt tggtcgcgca tcaggctttg tcgggcgggc
      961 aatggtgcgt ctgctggatg gcttctatac ccttagcgat caaaccatgt atgacatgct
     1021 tggctggctg gcgcaggaag aaggtattcg tcttgaacct tcggcactgg cgggtatggc
     1081 cggacctcag cgcgtgtgtg catcagtaag ttaccaacag atgcacggtt tcagcgcaga
     1141 acaactgcgt aataccactc atctggtgtg ggcgacggga ggtggaatgg tgccggaaga
     1201 agagatgaat caatatctgg caaaaggccg ttaataacgt ttcaacgcag catcgcaatc
     1261 ctttccctgg gtgagcgatg ctgccgatag cgcagactta agatccccgg tcttacccgc
     1321 tataaccccc tccttttatc atcacccaac gcctttcgct gtaaacggcg gtttcgcaaa
     1381 ccaaaccaaa accgtaagta agataaaagc aatagccgcc atacggaaaa tctcatttgc
     1441 agaaatagaa agtgactgct gggttatttc attattaatt tcattaagaa ctcctgaaag
     1501 cgaaccataa tatttatcca taatttgtga cgatgaatta aacacggggt taaattgatc
     1561 gatggttgct gtcaactgac tatggtgtaa cgattcgcgt cgtccccaca gcgtcattgt
     1621 caacgacgta ccaactgatc ctgacaaggt acgaaaaaaa ttactcatac tcgaggcatt
     1681 ggcaaattta ttatctggca agcctgaaaa cgaaatcgtt gttaagggta aaaagaaaca
     1741 ggcaacggcg aatccctgaa aaaactgcgg caaaatgatg cctgtaaaat caatcgttgg
     1801 cataaatgtc acagaacgcc agtaatagca aaccgcatac atcaaaaaac taaatgtcac
     1861 taacaaccgc atgtctattt tgttgccata acgtcctatc aaaggtgaaa ttaatagtgg
     1921 catgatgccg atgggcgcat aagcaagtcc ggcccatatc gcattatacc ccatcgtttc
     1981 ctggagtaac tgcggcataa ggacgatcgc tccagagtaa aataaatacg cgcatgtgat
     2041 actcacaata ccaatggtga agttacggga cttaaacaaa ctgagatcaa gaatcgggtt
     2101 ctctgaggtc gactcccaaa tgactaaaga gatcagagaa ataactgata ctactgttaa
     2161 tattattatt gtactcgagt tgaaccaatc cagatcgcgc cctttatcaa gcataatttg
     2221 caagccacca acaccgagca ctaacagggt cagtcctggt agattcattt tgaccggtga
     2281 agtctcagtt tctcttcctt taagtaaggt taagcataat gtcaggacga taatccccat
     2341 agggacattg attaaaaata tccaacccca gctaaagtta tcacaaatat aaccgcccaa
     2401 tatcggccca catatcggag cgataatcac ggtcattgac cataatgcca gagcaaatgt
     2461 tcttttttct ggcggataat tccttaataa taaactctgt gacagtggaa ttaacggccc
     2521 cgccattaac ccctgaacga ctctaaaaaa tatcagcaca tcaagattgg tcgataggct
     2581 acacattaat gaagacagcg aaaaaaaggt tactgaaagt aaaaataatc ttaattcgcc
     2641 tattctttgt gccaacctgc cagtaacagg gatcgcaatg gcatttgcta caccaaacga
     2701 ggtgataacc caggtgcctt cgtctgttga tgctcccaga aagccagata ttgtcggtat
     2761 tgcgacgtta gaaatagtgg aatccaacat ttgcataaat gtcgctaatg acaatgcaat
     2821 agtgacgcac cataacgtcc caccggttaa tggtgccgga gttgatttag tgattgccat
     2881 taaagttgtc cattatgcga aataatgttg ctaatttctt tttctatcgg actggtatcg
     2941 ataactaaag ccttactggt ataagccggc atggaggtca cggttgaagc cagctcaggc
     3001 atctcggcaa tgtcttcgtt cttcgtatca atagttgctg tcatcgataa accaatacgc
     3061 aagggatgtt ccatgagttc ttttggatca agagaaactt caaccggtac acgctgaacg
     3121 attttgatcc agttccctgt cgcattttgt gcaggtaata aggagaacgc attgccggtt
     3181 cccatattga tccctgtcac ccgaccatga aacacaacat tttcaccata aagatcgctg
     3241 ataatattga ccgattgacc aatccgcaca tccgtgagtt gtgtttcttt aaagttggca
     3301 ttaacccaca tttgacgtgc cggtacgaca gccattaacg attgtccggg gctcactgtt
     3361 tcgccgacct gaacacttct ctgggcaata tagccggtaa ccggactctt aatatccgta
     3421 cgtttaagcg ccaaccaggc ttctttagtt gcatccgccg cttcaacgac ttgtggctga
     3481 cggtttaatg gtgtgttcat tactaaagct ttattcgctt tataagcctg gatagcggca
     3541 ttcaatgccg ctttgctact tattaacgta tctttggtat gctccagcgt ttcttttgaa
     3601 ataaccccct gcttcgctaa cggcactcga cggttataat cttctaaaga ttgttgatac
     3661 tgaatacgtg ctgaagcgac ttcggcactg tattgtttat cctgtaagta tagtttattc
     3721 gtttgccgaa caatatttgc cagattattt ttagctttat tgagtgcgat agtggcatca
     3781 gttttatcca gtgaaactaa aatgtcacct tgtcgaacgt agttcgtatc tttatgatta
     3841 acgacagtga cactacctga gacttgtgca gaaattggat ctgcattccc cgtgacatag
     3901 gcgtcatctg tactaatcat gtcttctaat tccattgacc aatagacata ggcacctgaa
     3961 aacgcaataa ataaaactac cgccaataaa gaaaagtatt ttcttctgtt agaatgtttt
     4021 ttatttgaat taatctgttc cactattatc tctcatttct catagatgaa atttatgaat
     4081 tgaatgaaaa gagcattcat tcttcatatc aaacacagtg catgtgttgc acattatccc
     4141 aggaacgttg gaggcctaat ttaaatgagg tgcaaaaaaa acaacagagg actaaaccgt
     4201 ggcttttgca atacaattct tacgcctgta ggattagtaa gaagacttat agtgctaact
     4261 tgaaactata aatcatcggt acaacccctg attttattgt tgacatttca tttatgccga
     4321 ctatttatat ggtatacttg tcgaattatc ttaaaggaag ctcagatttt cttattttta
     4381 ttgagaaaat gagatgacgc cttatgtctg tattactaca gggagaaggg agatgcttca
     4441 ttgcaaaggg aataatctat gaacgcaata attattgatg accatcctct tgctatcgca
     4501 gcaattcgta atttattgat caaaaacgat attgaaatct tagcggagtt gactgaaggg
     4561 ggaagcgccg ttcagcgggt ggaaacactt aagcctgata tcgtcatcat tgatgtcgat
     4621 atccccggag ttaacggtat ccaggtgtta gaaacgctga ggaagcgcca atatagcgga
     4681 attattatta ttgtctccgc taaaaatgac catttttacg ggaaacattg tgctgatgct
     4741 ggcgctaatg gattcgtgag taaaaaagaa ggcatgaaca atatcattgc ggctattgaa
     4801 gctgcaaaaa atggctactg ctatttcccc ttctctctca accggtttgt tggaagttta
     4861 acgtccgacc agcaaaaact cgactcctta tcgaaacaag aaattagtgt catgcggtat
     4921 attcttgatg gcaaggataa taatgacatt gctgaaaaaa tgttcatcag caacaaaact
     4981 gtcagcactt ataaaagtcg cctgatggaa aaattagaat gtaaatcact gatggatctt
     5041 tacacattcg cgcaacgtaa caaaatcggc taatcacatg aagtttttac cctatttttt
     5101 tcttctctgt tgtggtcttt ggtcgaccat aagtttcgca gacgaagatt acatcgaata
     5161 tcgtggcatc agtagtaaca accgtgtcac acttgatcca gtacgtctga gcaacaagga
     5221 attacgttgg ttagcgagca aaaaaaatct tgtgattgca gtacacaagt cccaaacggc
     5281 taccttgttg cataccgatt cgcagcaacg ggttcgtggt attaatgctg attatttaaa
     5341 tcttttaaaa agagcgttaa atatcaaatt aacactccgg gaatacgccg atcatcaaaa
     5401 agcaatggac gcgctggaag aaggtgaagt cgatatagtg ttatcacatt tagttgcttc
     5461 gccgcctctt aatgatgaca ttgctgcaac caaaccactg ataattacct ttccggcgct
     5521 cgtcaccacc cttcacgatt caatgcgacc gcttacctca tcaaaaccag taaatattgc
     5581 tcgagtagca aattatcccc ctgacgaggt aattcatcaa tcatttccaa aagcaacaat
     5641 tatctctttt acaaatttat atcaggcatt agcatccgtc tcagccggac agaatgatta
     5701 ctttattggt agtaacatca ttaccagcag tatgatttcc cgctatttca ctcactcctt
     5761 aaatgtagtg aaatattata actcaccgcg tcaatataat tttttcttga ccagaaaaga
     5821 atctgtcgtt cttaatgaag tactcaatcg atttgttgat gctttaacaa atgaagttcg
     5881 ctatgaagtt tcacaaaatt ggcttgatac aggaaacctg gcctttctga acaaaccatt
     5941 agaactcact gaacatgaaa aacagtggat taagcaacat cccgatttaa aggtgctgga
     6001 aaatccttac tctcctccct attctatgac ggatgaaaat ggctcggttc ggggcgttat
     6061 gggggatatt cttaatatta ttaccttgca aacaggttta aatttttctc cgatcaccgt
     6121 ttcacacaat atccatgccg gaacacagct taaccccggt ggatgggata taatacctgg
     6181 cgctatttat agtgaagatc gagaaaataa tgtttcattt gcagaagctt tcataacaac
     6241 gccatacgtt tttgtcatgc aaaaagcacc tgacagtgaa caaacattaa aaaaaggaat
     6301 gaaagttgcc attccatatt attatgagct gcattcgcaa ttaaaagaga tgtatccgga
     6361 ggttgagtgg ataaaagtcg ataacgccag cgctgcattt cacaaggtca aggaaggtga
     6421 acttgatgct ctggtcgcga cacagctaaa ttcgcgttac atgatcgatc attactatcc
     6481 taatgaactg tatcagtttc ttattcccgg cgttccgaat gcatcgcttt cgttcgcttt
     6541 tcctcgcgga gaaccggaac ttaaggatat tattaataaa gcactgaatg caattccccc
     6601 aagcgaagtt ctgcgcctga cggaaaaatg gattaaaatg cccaatgtga ccattgacac
     6661 atgggacctc tatagcgagc aattttatat tgttacgaca ttatccgttt tattagttgg
     6721 cagtagcctt ttatggggat tctacctgtt acgctcagtt cgtcgtcgta aagtcattca
     6781 gggtgattta gaaaaccaaa tatcattccg aaaagcactc tcggattcct taccaaatcc
     6841 aacttatgtt gtaaactggc aaggtaatgt cattagtcat aatagtgctt ttgaacatta
     6901 tttcactgcg gattactaca aaaatgcaat gttaccatta gaaaacagtg actcaccctt
     6961 taaagatgtt ttttctaatg cgcatgaagt cacagcagaa acgaaagaaa atcgaacaat
     7021 atacacacag gtatttgaaa ttgataatgg catcgagaaa agatgcatta atcactggca
     7081 tacattatgc aatctgccag ccagcgatca tgctgtttat atttgtggtt ggcaagatat
     7141 taccgagacg cgtgatttaa ttcatgcact cgaagtagag agaaataaag cgatcaatgc
     7201 aactgtcgca aaaagtcagt ttctggcaac aatgagtcac gaaataagaa caccaataag
     7261 ctccattatg ggcttcctgg aacttctgtc gggttctggt cttagcaagg agcaacgggt
     7321 ggaggcgatt tcacttgcct acgccaccgg acaatcactc ctcggcttaa ttggtgaaat
     7381 ccttgatgtc gacaaaattg aatcgggtaa ctatcaactt caaccacaat gggtcgatat
     7441 ccctacttta gtccagaaca cttgtcactc tttcggtgcg attgctgcaa gcaaatcgat
     7501 cgcattaagt tgcagcagta catttcctga tcattacctg gttaagatcg accctcaggc
     7561 gtttaagcag gtcttatcaa atttactgag caatgctctc aaatttacca ccgagggggc
     7621 agtaaaaatt acgacctccc tggttcacat tgatgacaac cacgctgtta tcaaaatgac
     7681 gattatggat tctggaagtg gattatcgca ggaagaacaa caacaactct ttaaacgcta
     7741 cagccaaaca agtgcaggtc gccagcaaac aggatctggc ttaggcttaa tgatctgcaa
     7801 agaattaatt aaaaatatgc agggcgattt gtcattagaa agtcatccag gcataggaac
     7861 aacatttacg atcacaatcc cggtagaaat tagccagcaa gtggcgactg tcgaggcaaa
     7921 agcagaacac cccatcacac tacctgaaaa gttgagcata ttaatcgcgg atgatcatcc
     7981 gaccaacagg ctattactca aacgccagct aaatctatta ggatatgatg ttgatgaagc
     8041 cactgatggt gtgcaagcgc tacacaaagt cagtatgcaa cattatgatc tgcttattac
     8101 tgacgttaat atgccgaata tggatggttt tgagttgact cgcaaactcc gtgagcaaaa
     8161 ttcttcctta cccatctggg ggcttacagc caacgcacag gctaacgaac gtgaaaaagg
     8221 gttaagttgc ggcatgaact tatgtttgtt caaaccgttg accctggatg tactgaaaac
     8281 acatttaagt cagttacacc aggttgcgca tattgcacct cagtatcgcc accttgatat
     8341 cgaagccctg aaaaataata cggcgaacga tctacaactg atgcaggaga ttctcatcac
     8401 tttccagcat gaaacgcata aagatctacc cgctgcgttt caagcactag aagctggcga
     8461 taacagaact ttccatcagt gtattcatcg catccacggt gcggctaaca tcctgaattt
     8521 gcaaaagttg attaatatta gccatcagtt agaaataaca cctgtttcag atgacagtaa
     8581 gcctgaaatt cttcagttgc tgaactctgt aaaagaacac attgcagagc tggaccagga
     8641 gattgctgtt ttctgtcaga aaaatgacta aatagcggct cccacaatgt tcaaatgtgg
     8701 gagctattta ccagcacatc ttacatttat gatgagaact cctggcgaat ttgttcccca
     8761 tgctggtcga gcgttgccgc tcccggcata acatgcgggt ccgcgcagcc gctgattttt
     8821 atcggattac ccggcatcat tattcccccg gcttcaatca acatatttct cgcctgagtt
     8881 tgtggcaatt taatggcctc agccacactt aataacggcg cgacgggtac accaacttca
     8941 tgtattctgg ctaaccaaac ttcagctgcc tgcgttttta acgtccgctc aatatattgt
     9001 ttaagaatag cctggttttg tacgcgtaaa atattgctgc taaatcgggg atcattaacc
     9061 agttccgtaa gctccagtgc ctggcataac gcagaaaaaa gcttgtcatt accacaacaa
     9121 atcgtaatcg gcttatcctg agtattgaaa acatcaaaag gtgccatgta gggatggcga
     9181 tttcccagac gttgtggtga cttccctgtc gcgatatatg ccatcagacc atgctccaga
     9241 aaactcagcg tggcatcaaa catcgctata tcgacatgcg cccctctctg gctcttttcg
     9301 cggccataaa gtgcactcac tattccgctg aataaataga caccgccgca tagatccgca
     9361 agagatgtac caacgcgcac tggcggagca tcaggatatc ctgtttccat cattatcccg
     9421 ctcattgcct gaatgatggt atcgtaggca ggagcatctt ttagcggacc ggtatgtccg
     9481 aaacctgacg atgaagcata tatgaggcgc gggttgattt cttgaagcgt ttcccatgaa
     9541 aaccccagtt tttccattgt acctgggcga aaattctcag ctaatacatc agcttgtttg
     9601 agcatattta taaatatact tttatcgtaa tcattcttta aatcaagaac cacactctct
     9661 ttgccatgat taataaaact gtaatagagt gactgtccat ccacataggg accaaatgtg
     9721 cgggtatcat caccatgacc cggcggctca actttaatta cccttgcgcc catattacaa
     9781 agaagttgag ttccgaaagg tccattaagg acatgtgtca tatcgataac taataagcct
     9841 tcaaacggcc ctttgctttc attatttgtc atttgcttat gccttgaaaa aagccgaagg
     9901 tgaaaagaca cttcggcatt tatgtaaaat caataacatg attaattatg aaaccagtcg
     9961 actgacataa atccacaagg gagccgtgac gacaaagccc agtacgctca cagccaatga
    10021 cgctgtacca gtacgggtgt agacattaaa ccggctggca ataataattc cggagaatgc
    10081 cggcggtaat gcgcctgcca gtaccatcat ctgcagatgt tcgctgttca aatgacatgc
    10141 cataccaacg agaagcagtg ccagtggcat cagaatcagc ttcaggaagg tgttataaac
    10201 aatttcggca ctgaactcga atttatgtgc agccagagtc aaccccgcag cgaataccgc
    10261 tacccctgag ttagccttcg caatcagatt aaaggttggg tcccatgctg ccggaatttt
    10321 taccccaacc aacaccagga tcgttgccag aacaggtgcc catactactg gctcctttgc
    10381 cgcagaaatt aatgcactca gattactatt cttcttacca tccgctcctg aagaaggatt
    10441 cagcaaatac agaccaatag gaatagtaat tgcgttaaca ataatagaaa taattgctac
    10501 cactaaacct gttgatacgg aatcaccata aataggatcg agaactgcaa accccaggaa
    10561 tccaatggta ggtgaacctg caattaatgc acatacagct gcttctgcat gggtacgttt
    10621 aaaaaatttg tagcaaccga accaggagaa aaagaaacat ccgacaataa ccacaagtga
    10681 tacaagggtc agacgagtgt ccgcaaaaat catttccctg tttgcccgag taatagatac
    10741 aaatagagcc gcaggaagcg cgtagtttaa taccagttta ttaaatgcgc gggcttgatc
    10801 ttctgaaaaa gtttctcgtc tgccgctaaa ataacccaac agcatgatta cgataatagg
    10861 caataaatcg ccaataaaaa atgttagcat aatagtattt ccgataaggg tcccctcacc
    10921 atcgcataat gaattggcaa gaggagacga tgtcagtatt taattaccag cgacttgttt
    10981 tgggttaagt ttggtaatat ggccactttc agttcctgct gcagggtcga tgaccacatt
    11041 aataatggtc ggtttgcgcg actgaatacc ggtggttaaa gcatgacgaa gttcatctgt
    11101 cgtggtgacg ttatagccaa cgccacgaaa cgcatccatt aatttgtcat accttgcatg
    11161 gtgcaacaga tccgttggag atggtgcacc agcgccactg agatcaacac cgtctcctct
    11221 gtagatgccg ccattattaa aaataacgat cgtcaccggc aggttatatc gacaaatcgt
    11281 ttcaatttcc atcccactga aaccaaaagc actatcacct tcaatggcga caaccggaga
    11341 accagaagtc acgctagcac cgatggcata gcccataccg atgcccatga caccccaggt
    11401 accacaatcc agacgacgac gtggtttata catatcaata atatttcgtg cattatccag
    11461 ggtatttgca ccttcattaa ctaaataaat atcctggttc tcgcgcaata cgtcgcgcac
    11521 agaacttaat gcattaaagt aatttaatgg ttgagtatct gtacttaatt tttcatgcat
    11581 tttttgtgca ttttgctgct tgtggatatt taaaatatcg cgccatacca gtggagtcgt
    11641 aaatgtgttt tgtttcagtt ctgccagcat accttgcata ctggatgcaa tatcaccaat
    11701 gactggcaca gcaatggggc ggttgctgtc aatttcctgc ggttcaatat ccagttgaat
    11761 aaactgtgta tctgccgccc atcctttttt accgtgtgcc aataaccaat tcagtcgtgc
    11821 accaacaagc atgacaacgt cagcatttgc cagggcaaac gaacgcgcag ctgccgcaga
    11881 aagtggatgc gtatcttcaa ggatcccttt cgccatagac attggcagga atggaatctg
    11941 agcactttca ataaattcac gaagctgttc atcagcttgt gaatacgccg cgcctttgcc
    12001 aaggataatt aatggccgtt cagcttttgc taaaagcgaa attgcgctag tgactgactt
    12061 cgggcatggc aataatgctg gcgacggatt ttcaacttta acaatcgtgg ttaacgcttc
    12121 gtctttttcc atcgtcgcgg ccaggacatt tgctggcaaa tcaagataaa ctccgccagg
    12181 gcgacccgat acagagaccc ggatagcgcg tgccaatgca atgccaagat cctgcggctg
    12241 attaacgcga aatgctgctt tggcatacgg ttttgccgca ttcatttggt ccagctcttc
    12301 ataatcacct tgctgtaggt cgacgatcgc gcggtcgctg gagccgctaa tcatgatcat
    12361 cggaaaacca tttaccgttg cgttggccaa tgccgtcaaa ccattgagga atcctggcgc
    12421 agaaactgtc aggcagatcc ccggtttttg ggtaagaaaa ccgcttgccg cagcggcata
    12481 gcctgccgac tgctcatgac gaaaaccaat ataacgaatg ccttccgcct gggcatggcg
    12541 tgccatatcc gtcacaggaa tacctacaac accataaata gtgtcaatat tattctgttt
    12601 taatgcttca acgatgatat gcataccatc tgtcatttga agttgatctg acatgattaa
    12661 taacctcgaa atttttataa attgggagcc agaagccccc gttaatatca gatggcgtgg
    12721 ttttgcttca ttgcagcaat ttcatcgtcg ctataaccta gctcctgcaa tacagcagcg
    12781 gtatgttcac ctaatagcgg cgcagcttta atatccggcg taaaagcaga gaatttcatt
    12841 ggacaaccaa cggtcagata ttttccacgc aacggttgtt ccacttcaac aacactgcca
    12901 ctttggcgca aagagggatc aagtgaaatt tctttcatac ttaaaaccgg tgcacaagga
    12961 atatcaaact gagtcaaata ggccaccgct tcatgtttat caatagtgac agtgtatttt
    13021 tcgatttcag caaaaatatc gaaaatatgt ggctgtcggg catgggctgt actgtatgcc
    13081 ggatcggtaa tccattctgg tttgccgatg gctttacagg tgttttccca gttttgctcc
    13141 tgaatagtga aataaatata ggcgttcgga tcggtttccc agcctttaca tttcaggatc
    13201 cagccaggct gaccgccacc acctgcatta ccaccgcggg gaactgcatc accaaatgta
    13261 ccattcggat actgcgggta ttcttccaga taacccaatt tatcgagacg ctgctggtca
    13321 cgtaatttca cgcggcaaag gttcaatacg gcatcctgca ttgacatggt gactcgttgc
    13381 ccacgccccg ttttttcgcg atgcagcaaa gcagcaagca aaccgatcag caaatgcatt
    13441 ccggtgttgc tgtcacccaa cgctgcagcg cttaccagcg gcggaccatc ccaaaaaccc
    13501 gtagtggatg ccgcgccacc cgctgcctga gcaacgtttt cataggcttt tacattcaca
    13561 taaggcgaac actcatcaaa ccctttgatc gaaccaaaaa tcagacgtgg attgatttct
    13621 tgaatatgct cccaggtgaa gcccatgtga tcaatggccc ctggatgaaa gttctcgact
    13681 aagatatcag cttcgcggat cagcttttcc attacctctt tgccttccgc tgttttggta
    13741 tttaactcaa tagaacgttt gttactgtta agcatggtga agtaaagcgc atcgatatca
    13801 ggaatatctc gcagctggtg acgcgttacg tcaccaacgc cgggacgttc aattttaata
    13861 acgtcagcgc caaaccaggc cagcatttga gtacaagatg ggccagattg cacaccggtg
    13921 aaatcgagaa ctttaattcc ttgaagtgga gttgacatag caatacctat tagttaatta
    13981 aatatgtgtt aatttagcgt ttatttaagg cgtaatatct tctataaata acccgcaaaa
    14041 tatcgtcgta gctgcactcg atatttttaa aatcctgtat caagtgctga aaatcatttc
    14101 atcgccactt ccaattcctt tctgcatggt aagtagtgag gacgaaaaga agaatatgat
    14161 aaatattgat tcgtggtaat cagagagagt cgcgacattt gtgatgttat tcttacaact
    14221 gtaagaagcg ccggtgattt acaagtaagg gtatgattac gctttttaaa gcgtaccata
    14281 aaacataaca taataaatga tttgtgatga cacgggatta ttggggttta ctttgaggaa
    14341 gataaaatgc gtgtttatag aaccgcgagc gccaaataat tttatgacca caacctgtcg
    14401 tattgtggtc ataaaaaatt gtcggctgga gggagttaaa tcctttacct caatatactg
    14461 cctgtcagca ttagttcaca aacagtgctt cgctgtcgac gatgattcca tcttccgcac
    14521 ctttcagcgc caggtttgcc tcgtagtatt gctttttatc aagcagtttc tgcgcatcag
    14581 caagtgcatt acgagtctgt ttaagcggca tcagatattg gttttccatt acgccaacac
    14641 cggccaggcg aagttcttcc attgcgccct ttttatcccc tttcgccatt ttttcattgg
    14701 caatttttat cgcggcttct ttttcgggag ttgctacata actctcagaa attccgacag
    14761 atgcattaat gacaatatat tggtcatcat tgagattggt ctttttacct ggcttagcga
    14821 actttgccca ttcggtactg tcatctgaca gcaaagcgga agcttcattg gtcagttctt
    14881 ttgccttttc tggatcgcca tgaaacagag ccaggcgcgc tacctgcacg tcacgcatcg
    14941 catataaacc ttgttcagag atacgctctg ctgctgccgt tttctgggtt tgctgaactt
    15001 gctgagtttg ctgttgtgcc gctaccggtg cattatcagc agcccataca gttgaagatg
    15061 ccagaattgc tgtgaccatc gtagccataa ttaaacgttt catacttacc tcattcttta
    15121 acagttttag aaaacgccgc catcatattg ggtgagcatg aaatgagaaa tcagagagca
    15181 acggtcattt tgaaagggtt atcttacagt tgtagttatt atcgcaagaa gtattttagt
    15241 cttacaattg taggaatctg cttcctgtcg cagagaacta ttcttatgta ccacaaagag
    15301 atgtcattta ttatatcgat gtaaatattg attaattata tgtaaataca gccataacat
    15361 cgtaggttct cagtgaacca ttttcaggat aactttctat gaaagtaaac ttaatacttt
    15421 tcagcttatt tttattggtc tatattatgg catgcaatgt ttttgcattt tccatttctg
    15481 gtggtgtaag tgagaggagc tataaagaga ctgaaaaaac atcagcgatg acgaccacac
    15541 actctacaaa acttcagcca tcacaggcga ttttgtttaa gatgagagaa gatgcgccac
    15601 cattaaacct cacagaagaa atcacgccta cttatccgac aaaggcgaat tatcttattc
    15661 atcctgtgcg atagcgtctg tcacatggca ggtgaacaat catgtctgat gctgatgtga
    15721 acacctgccc aaatgagcca tcctgaccca ctatcgcctg ccatacccca ccataaagcg
    15781 aatcatcaag ccacaagccg gggcaagaaa cataaatatc tccgtcacta gttcattacc
    15841 gccagttaac cacatggtga agtaataaat gagtgcagcg aggatcacca tgccgaagaa
    15901 agaagagacc gccgatacca cgttcagtac ctgaccgatg tagccgctta cgcagacaat
    15961 acacagggcg agaaacatcc ataaataaat catagctcaa cctcctgccg cgctaaaaaa
    16021 cctgtaactt cagtcacttt aatagtaaga caatccttaa cctctggcaa tttttgctaa
    16081 gcatcaatga aaacagcatg ttaaatgcaa gactgttgtg tacggaaaaa tatttacttt
    16141 gcacgattaa taatcagtag ctgaaagcag tcagcgagtg ataaagtaca gataccgcat
    16201 tcatgctcct cgtggttatg tcctgactag tctttacaca ctttacagga accattgtcg
    16261 tacatgatgg cccaaccaat tgagtgtacc gctgtcgaca tggaatcttc tgcgatacaa
    16321 caattcgtat ctacagaagg taactatgtt tccacaatgc aaattttccc gcgagtttct
    16381 acatcctcgc tactggctca catggtttgg gcttggtgta ctctggcttt gggtacagct
    16441 tccttatcct gttctctgct ttctcggcac gcgtattggc gcaatggcgc gaccattcct
    16501 gaaacgtcgt gaatctatcg cccgtaaaaa cctggaactt tgtttcccgc agcattctgc
    16561 ggaagaacgc gagaagatga ttgccgaaaa ctttcgttca ctcggcatgg cgctggtaga
    16621 aaccggcatg gcatggttct ggcccgacag tcgcgtacgt aaatggtttg atgttgaagg
    16681 gttggataac cttaaacgcg cacaaatgca aaatcgcggc gtaatggttg tcggcgtcca
    16741 ttttatgtcg ctggaactgg gcggccgcgt gatgggactg tgccaaccaa tgatggctac
    16801 ctatcgtcca cataataatc agctgatgga atgggtgcag acccgtgggc gcatgcgctc
    16861 taacaaagcg atgatcggca gaaataatct gcgcggcatt gtcggtgcac tgaagaaagg
    16921 tgaagcggta tggtttgctc ccgatcagga ttatggtcgt aaaggcagct ccttcgcgcc
    16981 gttctttgcg gtggaaaatg tcgccacaac caatggcacc tatgttctct cccgtctctc
    17041 tggcgcagcc atgttgaccg taacgatggt aagaaaagcg gattacagcg gatatcgttt
    17101 gttcatcacc ccagagatgg aaggctaccc gacagatgaa aatcaagccg ctgcctatat
    17161 gaacaagatt atcgagaaag agatcatgcg cgcaccggag cagtacctct ggatccactg
    17221 tcgctttaaa acgcgcccgg tgggagaatc gtcgttgtac atttaacaaa ctgctcttac
    17281 tctttccctc ctcaaatcgg ccataataac ctcatggttt ttatggcttt tttcttaagg
    17341 ttttttcctt cgctgaatat ctaattatta ccgtcagaaa ttaaactgtc gccgatatga
    17401 gacacctgta agttactaaa agtaaataag aaaatgcctc ttgtctcgtt tcagttttag
    17461 gcgtacatta gcgccgtctc gagcagttta gctcagaatt ctggggtgat gcccacggta
    17521 aaatacaggg cttttaaggt cgctttgccc agtgtcaact cactgtatca ggtgtaatga
    17581 agtcattcag gcgtaacagc aattacgcgg agagatgtaa agtgaaatat ttctttatgg
    17641 gcatttcttt tatggtcatc gtttgggccg gtacttttgc cctgatgatc taaaagcaaa
    17701 ctgtgcaatg aaaaacagga gccatcaggc tcctgtttgc atttctgacg acggtgttta
    17761 ttccgcgttt tcgtgaatat gtttgctgct ggcgggtagt aaaccgtcgg cacggaacat
    17821 cgctttaatc cctctgatgg cctgacgaat acggtcgcgg ttttcaatca gtgcaaagcg
    17881 aacatgcgta tcaccatagt cgccaaagcc aatccccggc gagacacaga ccttcgcttc
    17941 gttaagcaat ttcttggcaa ataccagcga gcccatggca gcatacggtt ccggtatttt
    18001 cgcccagaca tacatcgaag ccttcggcat ttcaactatc cagcccgctt catgcagccc
    18061 tttaaccaat acatcacggc ggcgtttgta ctgttcggca atgtcgcgca cgcactgttg
    18121 atcgccctcc agcgccgcaa tcgccgccac ctgcaacggc gtaaaggtgc cgtaatcgtg
    18181 atagctttta atacgagcca gggcgctgac cagcgttttg ttgccaacca taaagccgat
    18241 acgccagccc gccatgttgt agcttttcga cagcgtaaag aactcgactg ccacatcgcg
    18301 tgcacccggt acctgcatga ttgacggcgc tttccagcca tcgtagacga tatcggcata
    18361 ggccaggtcg tggaccacca gcacatcgta gcgtttcgcc agcgccacaa ccttttcgaa
    18421 gaactccagc tccacgcatt gcgcggttgg attcgacggg aagccgagga tcatcatctt
    18481 cggtttcgga taactttcac gaatggcgcg ctccagttcg ttgaagaaat cgacaccttc
    18541 caccagcggc actgagcgta cctgcgcccc ggcaatcacc gcgccataaa tatggatcgg
    18601 gtaacttgga ttcggcacca gcaccgtgtc accatgatcc agcgtcgcca gcatcagatg
    18661 cgccaggccc tctttcgaac caatagtgac gatggcttct gattccgggt cgatttcaac
    18721 gtcgtagcga tcctgatacc agcgggaaat ggcgcgacgt aaccgcggaa tgccgcgtga
    18781 agtggagtaa ccatgcgtgt cctggcgctg ggccacagta cataattttt cgacgatatg
    18841 cggcggagtc gcaccgtccg ggttacccat gctgaaatcg ataatatctt cgccgcgccg
    18901 acgcgcagcc attttcagtt cagcggtgat gttaaaaacg tagggcggga gacgatcaat
    18961 gcgcgtaaag cgacgttcag ggcgagtgtc agccataatt tcctcagatt aacgttagcg
    19021 cccggaccgt ccgagcgacg ctgccacaat ggtggctgtt ttgaaaatag cctgattaat
    19081 ttctgtctgt ccagcgtttt agaacatttt tatcaatggc tttaaatgag gaactccact
    19141 tcaaaaacag gaaatttttc tacgctaaca agaaaattac caccaatttt attaacatta
    19201 taatttcaat aaatttacca gccagaagtg cattatcaag agatacattg ctaatacacc
    19261 atttatcttt caatcccctt ttaaatttat ggtttttcct caaaaacggc ctgctggtca
    19321 tcagccttca ggttacctat catagaggtt taatccttat tcagagtcac ccgtgcacga
    19381 aatattcaac atgctgctgg cggtcttcga tcgggcagcg ttaatgctta tctgcctgtt
    19441 ctttctcatc cgtatccgcc tgtttcgcga gctgttgcac aagtcggcac actccccaaa
    19501 agagttgctt gctgttaccg ccattttctc gctgttcgcc ctgttcagca cctggtccgg
    19561 cgttcccgta gaaggctcgc tggtgaacgt acgtattatc gcggtgatgt ccggcgggat
    19621 tctgtttggc ccgtgggtag gcatcattac cggcgtgatt gcgggtattc accggtattt
    19681 aattgatatc ggcggcgtga cggcgatccc ctgctttatc accagcattc tggcgggttg
    19741 tatatcaggc tggataaacc tgaaaatccc caaagcacag cgctggcgcg tcggtattat
    19801 cggcggcatg ttgtgtgaga cgttgaccat gattctggta attgtctggg caccaactac
    19861 cgcgttgggg atcgatatcg tctctaaaat cggcattcca atgatcctcg gtagcgtctg
    19921 tatcggcttt attgtgcttc tggtgcaaag cgttgagggc gaaaaagagg ccagcgccgc
    19981 gcggcaggcc aagctggcgc tggatatcgc caacaaaacg ctaccgctgt ttcgccatgt
    20041 caatagcgag tcattacgca aggtctgcga aattatccgc gatgacattc acgccgatgc
    20101 ggtggcgatt actaataccg atcatgtgct ggcctatgtt ggcgtgggtg aacataacta
    20161 tcagaatggc gatgacttca ttagcccgac tacccgtcag gcgatgaatt acggaaaaat
    20221 catcattaaa aacaatgatg aagcccaccg cacaccagag attcattcca tgctggtgat
    20281 cccattgtgg gagaaaggcg ttgtgaccgg aacgctgaaa atttactact gccacgcgca
    20341 tcagataacc tcgtcattac aggaaatggc ggttggtctg tcgcaaatca tctccacgca
    20401 actggaggtt tcacgcgccg agcagctacg tgaaatggca aataaggcag agcttcgcgc
    20461 cctgcaaagc aaaattaatc cccattttct gtttaacgct ctgaacgcta tttcatcgtc
    20521 aatccgtctg aatccggata ccgctcgcca gttgatcttt aatctgtcgc gttatctgcg
    20581 ctataacatt gaattaaaag acgatgagca aatcgatatc aaaaaagagc tgtatcaaat
    20641 taaagactat attgccattg agcaggcccg ctttggtgac aagctgacgg ttatctatga
    20701 tattgatgaa gaggtgaatt gctgcattcc cagcctgctg atccagccgt tggtggagaa
    20761 cgccattgtc cacggtattc agccttgcaa aggtaaaggc gttgtcacca tcagcgttgc
    20821 agagtgcgga aatcgggtac gcattgcggt gcgagatacc gggcacggca tcgatccaaa
    20881 ggtgattgag cgggtcgaag cgaatgaaat gccgggcaat aaaattggcc tgctgaatgt
    20941 ccatcatcgc gtgaagttat tgtatggcga ggggctgcat atccgccgcc tggagccggg
    21001 gacggaaatt gcgttttaca ttcctaacca acgcacccca gtcgcctcac aggctacgtt
    21061 attgctttga gccggagtga tattgtgaaa gtcatcattg ttgaagacga attcctggca
    21121 caacaggaac tgagctggct aattaaagag cacagccaga tggagattgt cggcaccttt
    21181 gacgacggtc tggacgtgtt gaagtttttg cagcataacc gcgtcgacgc catttttctg
    21241 gatatcaata ttccgtcgct ggatggcgtg ttgctggcgc aaaacatcag ccagttcgcc
    21301 cataaaccgt ttattgtgtt catcaccgcg tggaaagaac atgcggtaga agcgtttgaa
    21361 ctggaggcgt ttgactacat tctcaaaccg tatcaggagt cacgtattac cgggatgctg
    21421 caaaaactgg aagcggcctg gcaacaacag cagaccagca gtacgcctgc cgcgacggta
    21481 acgcgtgaga atgacaccat taatctggtg aaagatgagc gaataatcgt cacgccaatt
    21541 aacgatatct attacgccga agcgcacgag aaaatgacct ttgtctatac gcggcgtgaa
    21601 tcctacgtaa tgccgatgaa cattaccgaa ttttgcagca aactgccgcc gtcgcatttt
    21661 ttccgctgcc atcgctcatt ttgtgtcaat ctgaacaaaa tacgcgaaat cgaaccgtgg
    21721 tttaataaca cctacattct gcgactgaaa gatctggatt ttgaagtgcc ggtcagccgc
    21781 agcaaagtga aagaatttcg ccagttaatg catctttaat cgggaacttt catgaaagca
    21841 ccaggcttgc ccgccgatca acaatttttc gccgatctgt tcagcggcct ggtgcttaac
    21901 tcgcaactac tggggcgcgt ctggtttgcc agccagcctg cctcgttacc ggtgggcagt
    21961 ttatgtattg attttccccg tctggatatc gtgctgcgcg gcgaatacgg caacctgctg
    22021 gaagcaaagc agcagcgaat ggtggaagga gaaatgctgt ttattccggc acgcgcggct
    22081 aatttaccga tcaacaacaa accggtgatg ctgttaagcc tggtgttcgc accgacctgg
    22141 cttgggttat cgttttacga tagccgcacc acgtcgttgt tgcatcctgc tcgccagatc
    22201 cagcttccca gcctgcaacg cggtgaaggt gaagcgatgc ttaccgccct cactcatctt
    22261 agccgttcgc cgctggagca gaatatcatt cagccactgg tgttaagttt gctgcatctt
    22321 tgccgcaacg tggtgaatat gccgccgggt aattcgcaac cgcgcggcga ttttctctat
    22381 cacagcattt gtaactgggt tcaggataat tatacccagc cgctcacccg cgagagcgtg
    22441 gcgcagtttt ttaatatcac gcccaatcat ctgtcaaaac tgtttgctca gcatggaacg
    22501 atgcgtttta tcgagtatgt gcgttgggtg cgaatggcga aggcgaggat gattttgcag
    22561 aaatatcatc tgtcaattca tgaagtggca cagcgttgcg gttttccgga tagcgactat
    22621 ttttgtcgcg ttttccggcg tcagtttggt ctgacgccgg gagagtacag cgcccgtttt
    22681 cagggctaac gtcagaaggt taattctatt tccagcagcg tcaggatact ttgtgcatct
    22741 tgcgcggcaa acaacgactg gcggaagttt ttattcacca gtttacgcgc cagctgcgag
    22801 aagactttca catgattcat cccttcgtta gcacccagcg tcagcatgat caccagttcg
    22861 acttcgccca tttctgactg ccagtcaatc ggtttcgcca gccgggcaat gctgatactg
    22921 gaatgacgga tccactgaga tttggtgtgc gggatcgcta cgccaaaacc aacgccggtg
    22981 gtaacaatct cttcccgctg ccagacatct tcttccagct caaacggatg ttcagtgcgc
    23041 ccgttaacgc cgaggttgcc gcacaggaac tggatcgcct gctctttatt gctaaaatcc
    23101 tgatcaacaa agatattctc cagcgccagc agtgggcgaa cgtcttcttc cggcgtaaag
    23161 gcggtgagta acgcttcaat ttcctgcgca ctgcggcatt cacatgcctg acgcgccagt
    23221 tcccgacacg cctcgctatc cagttgacga agctggcttt tcaccgccgg aatacgcggg
    23281 ctactcatac tcagctcatc caggcccagc ccaagcagta gcggcagata acggctttca
    23341 ccgcccagtt caccgcaaat gcctacccat ttgccccgct gatgcgcagt ggtaactatt
    23401 tgctgcaaca tgcgcaggaa cgatggcgta atcgggttat atagcggcga tacgcgcggg
    23461 ttattacgat cgaccgcata cagatactgg gtcatatcgt tggagccgat actgaagaaa
    23521 tcgacctcat cgcagaagtg gtcgatgatg tagcacaccg acggcacttc caccatgatc
    23581 ccaagcgtaa tcgtctctgc atgacgcagg ccatcgcgct taagctcaac gatcgctttt
    23641 tggatctcgc ccttcaccca taagatctga tcgagactgt ggaccatcgg gatcatcaac
    23701 tgggcgttgc caaaactggc ggcgcgcaaa atcgcccgta gttgagtgcg gaacaggcca
    23761 gcaaattccg ggtaaatacg taccgcacga tagccgagga acgggttctc ttcctgggga
    23821 atattcagat aaggaatgct tttatcgcca ccgatgtcca ttgtgcggaa gataatcggc
    23881 ttgtcgcccg ctgccagtag cacctgctgg taggcttcaa attgctcctg ctcgtccggc
    23941 gcgctgtcgc gatccatata gagcatttca gtacggaaca gtccaacgcc ttccgcgccg
    24001 ttggcaaacg cgcctggcgc ttccagagcg gtgccgatat tcgccgcaat atcaatacgc
    24061 ttgttatcac gggaataggc cagctgcgcg gcggcctgcg cctgttgttt ttggcgttta
    24121 tccgccagcg tctgtgcgac ctgataataa ccgctcaccg cgtcattcgg gttaatcgcc
    24181 agcacgccgc actgggcgtc aagcaccgcc ggttgcccgg cataacgggc aatcgcatcc
    24241 agcggcaggc cgctcagtac cgggatcgcc gaggcgcggg ccagaatcag ggtatgcgag
    24301 gtgcgcccag ttttctccag aatcatgcct gcaagatttt ttaaatcgag gctcaaaaac
    24361 tggcttgggg ttaaatcctc ggctaccaga atagtcggtt tttccagcac cagattgttg
    24421 cgcggcttca gttccggcca ggtgatatgc agcaactgtt cgctaatatc gcgaatgtcg
    24481 ctaacacgtt cgcgcagata atcactggca gaagcagaaa gtttggcgca aacctgctcc
    24541 atattgctga tgatcgccgc ccccagccct tgatgctgtt ctgtcatcag acgacggata
    24601 ttgcccgcga attcatcatc ctgaatcagc gacaaatggg cgctaaggat agttttgctt
    24661 tcgccgtcac tctcacgcaa ttgctggttc agttgctcgg caagcgttgc aaggctgtgc
    24721 tccagccggg tggaatcttg cgcactggcg gggattgccc gataactgtc gaggctgtcg
    24781 ctttgtaaca gggtcagcgt acccacgccg acgctgcttg ccagcacatt gccgtacagt
    24841 aaatccgggt tcaggcggct taatgaacgc ggcagcggat gcgccgtcag ttctgcctgc
    24901 gttggctgga tgctgtcgct gtcgataaag cgcacctgga tgtactcttc caacacgcgc
    24961 tgcgcctgct cttcatcgct gccgctaatg ttcaggctgc aactgtcatt aaataaagta
    25021 ccggtgccaa tcagcgccag cgagcttttc gcatcggcct ttgcgttctg gcgatggttg
    25081 ataaaggtga tttcgctttg ccactggctg cactgttctt taagttccca cgccggacga
    25141 gcatgaagac cgtttggcaa aggacagaga aattgaatcg ttaacataac cgctccgggt
    25201 taatcaggag atcatctgaa atccgtcagt tgaacaaccg tctcacgcgt aagacgttta
    25261 ataagggcag ataaaagctg ctgcatctgc aaaatgtcac ggcaatcggc aatcgatgcg
    25321 gcgcaatgtc cgtggcgggt tgctggcccc atcaccactg taggcacgcc ggtgccggtt
    25381 aagtgcaccg ctccgccgtc cgtgccgccg ttgctgaaca tatctgcctg taacggcacg
    25441 ccaatttctg ccgccacggt ttcgatccac gcggtaagtt ttggcggcgc aatcagcgac
    25501 ttgtcgctta acaccagcat cggcccgtta caaatctgac gatggttagc cgcgccataa
    25561 tcaaagtttt tcgcccagca ggcggtatca agcacaatgg cgacatccgg cgacaccgcg
    25621 cgggtggcag tttgcccgcc gcgtaccccc acctcttcgc tggaactggc caccagccac
    25681 acttccgcag gcagttcagc gctgtgtagt tcgcgcagta acgtcaccag caggtagcaa
    25741 ccgaggcggt catcaaaggc tttccccatc acccgctggt gagggagaac ctgaaaagtt
    25801 gtatcaaagg tgacgcgatc gcctggacga attcccgcct gcatcacttc gtcatacgag
    25861 cgcgtaccaa tgtccacgcg catggcgctg acgtcattcc cctgccggtc gccgtcaagc
    25921 aggcctggaa ttttgcactc ttcacgggtg gtgatgcgca ccggctgcag ctggcgggca
    25981 gccatgcgca cgttgccaac cggcagcaca tcaattgccc cttcgcggga gatgctgcgc
    26041 accataaatc ccacttcgtc catatgggcg cagatcatca ccttcggccc tgtcgattca
    26101 ttgaggcgga tcagcaccga tcccagacca tcaaatcgca cttctttttg caggcgatcc
    26161 gcttcttcca gcaggatctg ccgcacttcc tgttccgagg aggcgatcgc atctgcctcg
    26221 ctcaacgctt ttaatagcga taaatccatt atgcctctcc cgtgagcaac actgttttcg
    26281 gcatggcgta gagcacttct gcgccttgcg gggtaaccag cacaacatct tcgatgcgca
    26341 cgcccccttg ccctggcaaa taaatccccg gctccacggt cagcaacatg cctggctgta
    26401 gcgtcgtggt gtcccgcggt gaaaaacgcg gatcttcatg gacttcaatg ccgatagcgt
    26461 gaccagtgtt atgaccgaaa tagtcgccaa atccagcctc ggtaatgacc cggcgcgcgg
    26521 cgtcgtcaat ctgctggcag cgcacgccgg ggcgaattgc agagattgcc gcgagctgtg
    26581 cctgcaggac aatctgatag acgtcaaaca gcgggtgaga ttcggcgctc accccttcgc
    26641 cattcaccag caaggtgcgc gtcatatcag agcagtagcc ctgatacagc gcaccaaaat
    26701 cgagagtgac aaactcgccc gctgcaacaa tcttgtcgct ggctttgccg tgcggcagca
    26761 ccccgcgcca gccgctggcg acaatggtgt caaaagaggc tttttctgcg ccctgctggc
    26821 gcataaacca ctccagttca gcggctatct cgcgctcgct catccccgcc tgaataaagc
    26881 ggcgaatatg ctccgctccg cgatcggcaa tcccacaggc gaggcggatt atctccacct
    26941 cctctggcgt tttgatttgc cgcagcacat ccggcgtggc gctaaccagt ttcgcattga
    27001 gttcagactt ccagcggtgc gcggtttccc aactcacctg ctggccttca aaaccgagcg
    27061 tttgcaactg ctcatcggca atgatttgat tgacgatagt ggtaagcgtg ttcgtcgcgt
    27121 caagcaaatg cagctggtag ccttgcgcac gggcttccac ctcaacgaaa tagctcgaat
    27181 ctaccagaat gtgcgcactt tcacggctaa taaccacata gcctgatccg gtggagatcc
    27241 ccagatgcgg ctgtttgttc tgccgtgagg agagaagcac tgcatccagt tgttgctcct
    27301 taagccagtc gcgcagcgaa gcgagtaatg tcatctggat tttccttctt acaggctatc
    27361 gattaacaat ttgcctttac ggaacatcat cagacgcagg aacaccacca tcagcgcagt
    27421 tatgactgcc cccagcgcga tccccgccat atagacgcca aggttagtga ccagcggcca
    27481 tgcccagata gcggattccg ggaaccattg cactgcgccc agccagacag cggcggttga
    27541 gccgacaatc gcgccgacca tatacgacgg aatggcggtg atggggcttt ccagcgcaaa
    27601 cggaatcgca ccctcactaa tccccataaa ggcaaggaac atcgcggtct taccctgcgg
    27661 ataaagttga gcgttgaaca ggcgtttgcc ggttaaacga cggtcaataa tggtcgccag
    27721 ccccagacca atcggaggaa taacgatagc gatagaacga gcggtgaccg gtaatacgtg
    27781 gtcagtggta aagctgaagg caacgaaacc tgcggctttg ttgatcgggc caccaaggtc
    27841 gattgctgtc gccgcggcga tccccattgc gtacatcagc gcgcccttct cacctgcggc
    27901 agtcagcacg gtacggataa cgccgttgat ccagccgcca aagggggtaa tgacgtagta
    27961 catcgccagc atgacaaaaa tggcggaaag aatcggtagc aaaaatgtgg ttttgaacgc
    28021 taacaggaaa tccggtaact ggattttctg gttcatccac ttcacaaggt aacccgcgac
    28081 gatagaaata atcagcgcac caatgaaggt ggacggcacc ggcgaagagg tcgcccattg
    28141 catagtgctg ggatcgaagt tcagcagttg cgtcggctgg gtagacatca agccgccgat
    28201 aaaaccagcc gggaacgcca gtttgccacc gatagagttc gccacaaaag cagcaaacat
    28261 cggaatggca aaaccaaaca acacgccgcc gaaggactgc gacagccagg caaatttcag
    28321 taaggagagg tcgaaaccgg agaatttccc gctattaaga gcatccatga tgccgatctc
    28381 agcaggaatt ttaagccagc tataagcaat cagctggctg aaagcgagga tcacaccgcc
    28441 cataattaag gtcggcacca tgcgtgaaat ccctgacatc acatgctgcg ggagttcacc
    28501 ccagaagctg cttttagagg cctgcggatt cttaactgcc gctgccgcac cggatgcgcc
    28561 aggcacaacg gttgcactgc gttttttaat ggccataaca attatccctg tcgaatatta
    28621 ctgttgttca gaggcaatca tctcttcgat ttctttgatg atgcccgcag cgtttttaat
    28681 tgcgtcctgc aaagtgattt cataaacgtc gcgtgattcg aaacgctcat tatcttccgg
    28741 ggtaactgcc acggagtgga tgatgatggt tgcttcggcg atatcctgcg ccgtcaggcg
    28801 attctggata ccgtccgcgc cctgggtttc aattttcact tcataaccgg cttctaccgc
    28861 cgcttcttcc aacgcctgag cggccataaa ggtgtgagcc aggcccattg ggcaggcaca
    28921 taaggcaatc agtttcttac tcatcgttaa ttcctcattc agtgatagtt gacaagtgaa
    28981 attatgaacg tgcaaaacaa atcgccgtta ccagacaaat aatgcattta ctggagaatt
    29041 aatcccgctg tacggaagtg tgacgcaggt cggccttgtg aggggacaca aagaaaaatt
    29101 gaattaactg tatgatttaa acgattatcg ggagagttac ctcccgatat aacaggaagg
    29161 atttacagaa tgtgccctaa ggtctggcgt aaatgtgcac cggaaccgag aagacccgga
    29221 ttgtcatgga cgatgagata caccggaata tcatggacat attctttaaa gcgcccttta
    29281 tcttcaaatg cagcacggaa accagaggct ttgaagaact caaggaagcg cggcacgata
    29341 ccgcccgcaa taaacacgcc gccaaatgtc ccgagattga gcgccagatt gccgccaaaa
    29401 cggcccataa tgacgcaaaa cagcgacaac gcgcggcggc aatcggtaca gctgtcagcc
    29461 agcgcgcgtt cggtaatatc ttttggcttg agattttctg gcaggcggtt gtcagctttc
    29521 acaattgcgc gatacaaatt caccagccca gggccagaaa gcacgcgctc cgccgaaaca
    29581 tgaccaattt ccgcacgcaa tatttcgagg ataatggcct cttcttcact attcggcgca
    29641 aaatcaacgt gaccgccttc gcccggcaag cttacccaac gcttatcgac atggaccaga
    29701 tgcgcaaccc caagccctgt tccggcaccg taaaccgcaa taggtttacc ttctaccggt
    29761 tctgcgccac caaactgaat cagatgctct tttttcagca tcgggatcgc catcgataca
    29821 gcggtaaaat cgttaataat ttccagatgg ctaaaaccga gattcttttt catttcggca
    29881 attgagaacg cccaggtatg gttggtcatt gccacccagt caccggtaat tgggcaagcg
    29941 atggcaatac agccgtcttt cacctcgacc ttatgttctt caagataaac gcgaatgacc
    30001 gcttcgaggc tggggtaatc aagccctgaa taggtcttag cctgcgagat ttcaccactg
    30061 gcaatatcac acagagcaag acgtgcgttg gtgccgccca catcaccgac taatgcatac
    30121 tttatcattc ttcaactgct ccgctaaagt caaaataatt ctttctcaca ctgtaaatac
    30181 ctgggggcat aacaacaacg ccggaaaggc aggctccctg taaatatcga tctgggtcac
    30241 acatttactt tatcgtttca gcaccaattg cagcgatgcc tttttgcaag ctgggcaaac
    30301 taagtatctg accccgcata aggaatagaa catgctccat ccgcgagcca gaaccatgtt
    30361 gttattatcg ctccccgccg tggcaattgg gattgcgtcc agtcttattc tgattgtggt
    30421 gatgaaaatc gcctcggtat tacagaattt gctctggcaa cgactgccgg gaactctggg
    30481 gatagcccag gattcacctc tctggatcat cggtgtatta acgctaacgg gtattgcggt
    30541 ggggttggtt atccgtttca gccagggtca tgccggacca gaccccgcct gtgaaccgct
    30601 gatcggcgca ccagttccgc cctctgcgct accaggactt atcgtagcat taattctcgg
    30661 tcttgctggc ggcgtcagcc tggggccgga acatccgatc atgaccatca atatcgccct
    30721 tgccgtcgcc attggcgctc gtctgttacc gcgcgtcaac cgaatggagt ggactatttt
    30781 agcctctgcc ggaaccatcg gcgcgctgtt tggcacacct gttgcagcgg cgttgatatt
    30841 ttcgcaaacc ttaaatggca gtagtgaagt tccgctatgg gatcgtctct ttgcgccgtt
    30901 aatggcggca gcagctggtg cactaactac cggattattt ttccatcccc atttttcact
    30961 gcccattgcg cattacggac agatggaaat gaccgatatt ctcagcggtg caattgtcgc
    31021 ggcgattgcc atcgcagcag ggatggtcgc cgtatggtgc ttaccacggt tgcacgcgat
    31081 gatgaatcaa atgaaaaatc cggtgctcgt gctgggtatt ggcggattta ttctcggtat
    31141 tctgggggtt attggtggac cagtttcgct gtttaaaggg ctggatgaga tgcagcagat
    31201 ggtggcaaat caggctttca gcaccagcga ttactttttg ctggcggtaa ttaaacttgc
    31261 cgccctggtc gttgctgccg ccagtggctt tcgcggtggg cgaatcttcc cggcagtgtt
    31321 tgtcggcgtg gcattagggt tgatgctgca tgagcacgta cccgccgtac cagcggcaat
    31381 aaccgtttct tgcgctattc tcggcatcgt gctggtggta acacgcgatg gctggttaag
    31441 tctttttatg gcggcggtcg ttgtacccaa taccacattg ctaccgctgc tctgtatcgt
    31501 catgcttccg gcatggctgt tattagcagg taagccgatg atgatggtca atcgtccgaa
    31561 gcaacagcca ccccacgata acgtttagca aaaaatgctc tcctttatga tttaagagtt
    31621 atggcgatga tacggggctt tacctccccg taatattgcg ttaacaggcc gctgacggct
    31681 tcgatcgtga aggagaataa caatgttcag gtcactgttt ctggcggccg ccctgatggc
    31741 atttaccccg cttgcagcaa acgcaggtga aatcacccta ctgccatcaa tcaaattaca
    31801 aattggcgat cgcgatcatt acggtaatta ctgggacggt ggtcactggc gcgaccgtga
    31861 ctactggcat cgcaattatg agtggcgcaa aaaccgttgg tggcgtcatg ataatggcta
    31921 tcatcgtggc tgggataagc gtaaagcgta tgagcgtggc tatcgtgaag gctggcgcga
    31981 tcgtgacgat catcgcggaa aaggccgcgg acatggacac cgccattaaa cacattcgcc
    32041 aatggagcac aatgcctgat gcgacgctag cgcgtcttat caggcctaca aaccggatct
    32101 ttaacgcgta gggcggataa ggcgtttacg ccgcatccgc caatagtgcc agatgcgacg
    32161 ctcattcaac tacaatccca gcgccgtccc caccaacaac cagatattca gcgccacgac
    32221 cagcactaca atcacccagc ctgtctgttt tacgcgtttg ctgttcacca gatcgcccat
    32281 caacttgctg tcactggtga aaatcagcag tggaaccagc gccagggcga taccaaaact
    32341 taacagcacc tgactcataa ccagaatccg tgtcggatct aatcccatca gaatgacaat
    32401 aaatgacggc agcatggtga ctgtacgacg cacccacagc gggatatgga agcgaatgaa
    32461 cccctgcatc accacctgcc ctgccagtgt ccccactacc gttgaggaca gtccggcagc
    32521 aaccagactt aacccaaaga ccgttgccgc agcatggctt aacagcggtt gcagcgtcag
    32581 ataagcctca tcaagatcgg caacaccagt atgaccagaa aagtggaacg ccgccgcagc
    32641 tgtagccatc atcgccagat tgacaaaacc ggcaatagtc atggcgatag ccacatccca
    32701 tttggtggcg gaataacgtt gttgacgcga accgccatgt aaatgctgag tgagcgagga
    32761 gtgcaaataa atcacatgcg gcataatcgt cgcccctaac acgcctgctg ccaggaagac
    32821 cgcttccgaa gtaggtaaac tcgggatcac cattccttta cccagctgcg ccaggttagg
    32881 ctgggagaaa atcaactcga caatgtaagc cgcggcaaca aacaacagta acccgccaat
    32941 cactttctcc agcggttttt gcccgcgacg ttgcagcatt aaaatcagga aagtcgcgat
    33001 ccccgtcagc accgcgccct gcaacaacga aacaccaaga atgagtttaa aaccgatcgc
    33061 cgcaccaata aattccgcca ggtcggttgc catcgcaata atttctgcct gaacccaata
    33121 gaaccacact acgggacgcg gatagtgatc gcgaatctgc tccgccagat ttttaccggt
    33181 ggcaatccct agtttggcag agaggatctg aatcagcatc gccatcaggt tggcccaaac
    33241 gacaacccac agtagctgat agccgaagct ggcacccgcc tgaatattgg tcgcaaagtt
    33301 accgggatcg atataaccaa tcgccgcaat gaacgcaggt cccattaatg cgagcctcat
    33361 cttgcgcgcc gcccgtccgc tgctactctc aacgcgatag ttcgtcatct tgtgcctcta
    33421 aaacatagcc tttgctatgt ttcatgctat gataaacgag aatgattatc aaattcattt
    33481 aaatggattg tggtgatttc tgtgatagac caggattatg actacgaaaa gattgatgac
    33541 ttgaatgtta tggttatgtt taatgttagc acatttacat aactttcagc ttccatacac
    33601 aacatagcag aaatgtatga cagatcacta tttttgaagc ctgtcacagg acgtcattat
    33661 agtgtgtgtc agatctcgtt ttccttaacc atgttacata gaatgtgcac ggaaatttaa
    33721 cctgcctcat atttggagca aatatggacc gcgtccttca ttttgtactg gcacttgccg
    33781 ttgttgcgat tctcgcactg ctggtaagca gcgaccgcaa aaaaattcgt atccgttatg
    33841 ttattcaact gcttgttatc gaagtgttac tggcgtggtt cttcctgaac tccgacgttg
    33901 gtttaggctt cgtgaaaggc ttctccgaaa tgttcgaaaa actgctcgga tttgccaacg
    33961 aagggactaa cttcgtcttt ggtagcatga atgatcaagg cctggcattc ttcttcctga
    34021 aagtgctgtg cccaatcgtc tttatctctg cactgatcgg tattctccag cacattcgcg
    34081 tgttgccggt gatcatccgc gcaattggtt tcctgctctc caaagtcaac ggcatgggca
    34141 aactggaatc ctttaacgcc gtcagctccc tgattctggg tcagtctgaa aactttattg
    34201 cctataaaga tatcctcggc aaaatctccc gtaatcgtat gtacaccatg gctgccacgg
    34261 caatgtccac cgtgtcgatg tccatcgttg gtgcatacat gaccatgctg gaaccgaaat
    34321 acgtcgttgc tgcgctggta ttgaacatgt tcagcacctt tatcgtgctg tcgctgatca
    34381 acccttaccg tgttgatgcc agtgaagaaa acattcagat gtccaacctg cacgaaggtc
    34441 agagcttctt cgaaatgctg ggtgaataca ttctggcagg tttcaaagtt gccattatcg
    34501 ttgccgcgat gctgatcggc tttatcgccc tgatcgctgc gctgaacgca ctgtttgcca
    34561 ccgtgactgg ctggtttggc tacagcatct ccttccaggg cattctgggc tacatcttct
    34621 atccgattgc atgggtgatg ggtgttcctt ccagtgaagc actgcaagtg ggcagtatca
    34681 tggcgaccaa actggtttcc aacgagttcg ttgcgatgat ggatctgcag aaaattgctt
    34741 ccacgctctc tccgcgtgct gaaggcatca tctctgtgtt cctggtttcc ttcgctaact
    34801 tctcttcaat cgggattatc gcaggtgcag ttaaaggcct gaatgaagag caaggtaacg
    34861 tggtttctcg cttcggtctg aaactggttt acggctctac cctggtgagt gtgctgtctg
    34921 cgtcaatcgc agcactggtg ctgtaagacc atacataaaa aagccgggga taattcc
//
LOCUS       DAJVUY010000024        34284 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.024, whole genome shotgun sequence.
ACCESSION   DAJVUY010000024 DAJVUY010000000
VERSION     DAJVUY010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34284
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.024"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..652)
                     /gene="istA"
                     /locus_tag="OQQ72_001058"
     CDS             complement(<1..652)
                     /gene="istA"
                     /locus_tag="OQQ72_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element IS100 family transposase"
                     /protein_id="HCS2010864.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGF"
     gene            2006..2785
                     /gene="ipaJ"
                     /locus_tag="OQQ72_001059"
     CDS             2006..2785
                     /gene="ipaJ"
                     /locus_tag="OQQ72_001059"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HCS2010865.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(3731..4660)
                     /gene="virB"
                     /locus_tag="OQQ72_001060"
     CDS             complement(3731..4660)
                     /gene="virB"
                     /locus_tag="OQQ72_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HCS2010866.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(4877..5113)
                     /locus_tag="OQQ72_001061"
     CDS             complement(4877..5113)
                     /locus_tag="OQQ72_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS2010867.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            complement(5117..7018)
                     /gene="ipaA"
                     /locus_tag="OQQ72_001062"
     CDS             complement(5117..7018)
                     /gene="ipaA"
                     /locus_tag="OQQ72_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HCS2010868.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNDLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            complement(7027..8025)
                     /gene="ipaD"
                     /locus_tag="OQQ72_001063"
     CDS             complement(7027..8025)
                     /gene="ipaD"
                     /locus_tag="OQQ72_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HCS2010869.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGKVSEKNGGYVVNINMTPIDNMLKSLNNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            complement(8076..9167)
                     /gene="ipaC"
                     /locus_tag="OQQ72_001064"
     CDS             complement(8076..9167)
                     /gene="ipaC"
                     /locus_tag="OQQ72_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HCS2010870.1"
                     /translation="MEIQNTKSAPILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            complement(9187..10929)
                     /gene="ipaB"
                     /locus_tag="OQQ72_001065"
     CDS             complement(9187..10929)
                     /gene="ipaB"
                     /locus_tag="OQQ72_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HCS2010871.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LAANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELAPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            complement(10935..11402)
                     /gene="ipgC"
                     /locus_tag="OQQ72_001066"
     CDS             complement(10935..11402)
                     /gene="ipgC"
                     /locus_tag="OQQ72_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone IpgC"
                     /protein_id="HCS2010872.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            complement(11460..12086)
                     /gene="ipgB1"
                     /locus_tag="OQQ72_001067"
     CDS             complement(11460..12086)
                     /gene="ipgB1"
                     /locus_tag="OQQ72_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB1"
                     /protein_id="HCS2010873.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            complement(12102..12491)
                     /gene="ipgA"
                     /locus_tag="OQQ72_001068"
     CDS             complement(12102..12491)
                     /gene="ipgA"
                     /locus_tag="OQQ72_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HCS2010874.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            complement(12504..13988)
                     /gene="icsB"
                     /locus_tag="OQQ72_001069"
     CDS             complement(12504..13988)
                     /gene="icsB"
                     /locus_tag="OQQ72_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HCS2010875.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEV
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            14302..15918
                     /locus_tag="OQQ72_001070"
     CDS             14302..15918
                     /locus_tag="OQQ72_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HCS2010876.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     NGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESKHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKELNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            15928..16290
                     /gene="ipgE"
                     /locus_tag="OQQ72_001071"
     CDS             15928..16290
                     /gene="ipgE"
                     /locus_tag="OQQ72_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HCS2010877.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            16290..16748
                     /gene="ipgF"
                     /locus_tag="OQQ72_001072"
     CDS             16290..16748
                     /gene="ipgF"
                     /locus_tag="OQQ72_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system lytic transglycosylase
                     IpgF"
                     /protein_id="HCS2010878.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            16757..17872
                     /gene="mxiG"
                     /locus_tag="OQQ72_001073"
     CDS             16757..17872
                     /gene="mxiG"
                     /locus_tag="OQQ72_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HCS2010879.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKSGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDHKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            17880..18131
                     /locus_tag="OQQ72_001074"
     CDS             17880..18131
                     /locus_tag="OQQ72_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HCS2010880.1"
                     /translation="MSVTVPDKDWTLSSLSETFDDGTQTLQGQLTLALNALAENPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            18144..18437
                     /gene="mxiI"
                     /locus_tag="OQQ72_001075"
     CDS             18144..18437
                     /gene="mxiI"
                     /locus_tag="OQQ72_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HCS2010881.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSHPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            18443..19168
                     /gene="mxiJ"
                     /locus_tag="OQQ72_001076"
     CDS             18443..19168
                     /gene="mxiJ"
                     /locus_tag="OQQ72_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctJ family type III secretion inner membrane
                     ring lipoprotein Mxi"
                     /protein_id="HCS2010882.1"
                     /translation="MIRYKCFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGGFKRNKI"
     gene            19165..19692
                     /locus_tag="OQQ72_001077"
     CDS             19165..19692
                     /locus_tag="OQQ72_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HCS2010883.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIEWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            19634..20329
                     /gene="mxiN"
                     /locus_tag="OQQ72_001078"
     CDS             19634..20329
                     /gene="mxiN"
                     /locus_tag="OQQ72_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa type III secretion system linker protein
                     MxiN"
                     /protein_id="HCS2010884.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
                     IAEDLLKENPVND"
     gene            20322..20729
                     /gene="mxiM"
                     /locus_tag="OQQ72_001079"
     CDS             20322..20729
                     /gene="mxiM"
                     /locus_tag="OQQ72_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiM"
                     /protein_id="HCS2010885.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDENIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFDAGREADDSTW"
     gene            20713..21141
                     /gene="mxiM"
                     /locus_tag="OQQ72_001080"
     CDS             20713..21141
                     /gene="mxiM"
                     /locus_tag="OQQ72_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HCS2010886.1"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            21271..21903
                     /gene="mxiE"
                     /locus_tag="OQQ72_001081"
     CDS             21271..21903
                     /gene="mxiE"
                     /locus_tag="OQQ72_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system transcriptional
                     activator MxiE"
                     /protein_id="HCS2010887.1"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            21890..23590
                     /gene="mxiD"
                     /locus_tag="OQQ72_001082"
     CDS             21890..23590
                     /gene="mxiD"
                     /locus_tag="OQQ72_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HCS2010888.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTRNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            23609..24676
                     /gene="mxiC"
                     /locus_tag="OQQ72_001083"
     CDS             23609..24676
                     /gene="mxiC"
                     /locus_tag="OQQ72_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HCS2010889.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            24689..26749
                     /gene="mxiA"
                     /locus_tag="OQQ72_001084"
                     /gene_synonym="virH"
     CDS             24689..26749
                     /gene="mxiA"
                     /locus_tag="OQQ72_001084"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein MxiA"
                     /protein_id="HCS2010890.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            26762..27163
                     /gene="spa15"
                     /locus_tag="OQQ72_001085"
                     /gene_synonym="spaK"
     CDS             26762..27163
                     /gene="spa15"
                     /locus_tag="OQQ72_001085"
                     /gene_synonym="spaK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone Spa15/SpaK"
                     /protein_id="HCS2010891.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            27167..28459
                     /gene="spaL"
                     /locus_tag="OQQ72_001086"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
     CDS             27167..28459
                     /gene="spaL"
                     /locus_tag="OQQ72_001086"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system ATPase SpaL"
                     /protein_id="HCS2010892.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMATAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELLGETIR"
     gene            28552..28890
                     /gene="spa13"
                     /locus_tag="OQQ72_001087"
                     /gene_synonym="spaM"
     CDS             28552..28890
                     /gene="spa13"
                     /locus_tag="OQQ72_001087"
                     /gene_synonym="spaM"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Not similar to SpaM from Salmonella T3SS; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein Spa13"
                     /protein_id="HCS2010893.1"
                     /translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            28877..29755
                     /gene="spa32"
                     /locus_tag="OQQ72_001088"
     CDS             28877..29755
                     /gene="spa32"
                     /locus_tag="OQQ72_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HCS2010894.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            29749..30630
                     /gene="spa33"
                     /locus_tag="OQQ72_001089"
                     /gene_synonym="spaO"
     CDS             29749..30630
                     /gene="spa33"
                     /locus_tag="OQQ72_001089"
                     /gene_synonym="spaO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctQ family type III secretion system ring
                     protein Spa33"
                     /protein_id="HCS2010895.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNKFTGSESLVTLT
                     SVCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            30635..31285
                     /gene="spa24"
                     /locus_tag="OQQ72_001090"
                     /gene_synonym="spaP"
     CDS             30635..31285
                     /gene="spa24"
                     /locus_tag="OQQ72_001090"
                     /gene_synonym="spaP"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa24/SpaP"
                     /protein_id="HCS2010896.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            31300..31560
                     /gene="spaQ"
                     /locus_tag="OQQ72_001091"
     CDS             31300..31560
                     /gene="spaQ"
                     /locus_tag="OQQ72_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HCS2010897.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            31560..32330
                     /gene="spa29"
                     /locus_tag="OQQ72_001092"
                     /gene_synonym="spaR"
     CDS             31560..32330
                     /gene="spa29"
                     /locus_tag="OQQ72_001092"
                     /gene_synonym="spaR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa29/SpaR"
                     /protein_id="HCS2010898.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            32337..33365
                     /gene="spa40"
                     /locus_tag="OQQ72_001093"
                     /gene_synonym="spaS"
     CDS             32337..33365
                     /gene="spa40"
                     /locus_tag="OQQ72_001093"
                     /gene_synonym="spaS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein Spa40/SpaS"
                     /protein_id="HCS2010899.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            33378..33620
                     /locus_tag="OQQ72_001094"
     CDS             33378..33620
                     /locus_tag="OQQ72_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010900.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
BASE COUNT        10670 a         5055 c         6884 g        11675 t
ORIGIN      
        1 agaagcccat ctccttaccg aactgccaca gcgaaggatg gaaccggtgc tgaccggtct
       61 gatatgcgtc acgttgcaga accacagttt tcatattgtc atacaacact tcgcgcggca
      121 caccaccaaa gaagcggaac gcattacgat ggcaggtctc cagcgtgtca taacgcatat
      181 tgtcagtgaa ttcgatgtac aacattcggc tgtatccggg aacagcaacg aacacgtgaa
      241 gcggtgagcg accattacgc atagtgcccc agtcaacctg catctgtcgt ccgggttcag
      301 tttcgaaccg aacggcaggc tcctgctcct gaggaaccga gagagaacga atgaatgccc
      361 tgagaatggt cattccgcca cgatatccct ggtctctgat ctcgcgagcg attaccgttg
      421 ccgggatttt gtaaggatga gcatcggcga tgcgttgacg aatataatcc cggtattcat
      481 ccaggagtga agcaacagca ggtcgcggcg tatattttgg cggctcagat tttgcctgca
      541 aataacgttt aacggtattg cgggagagcc ccagttctct ggcaatcgcc cggctactca
      601 ttccctgctt gtgcaggatt ttaatttcca taactgtctc aaaagtgacc ataagctctc
      661 ctgaatcagg agagcagatt accccctgga tctgatttca ggcgttgggt gtggatcact
      721 attgcaccgt tcgtgacact tgttgactgc ctgtgcggca tctggtatca aggtggcgtg
      781 aagccggttc aggttctcat gcggaacgtt ggaacctata tccccccgat accaaaggcg
      841 aaatgtaagt gacaaaatgc aatgaacacg ttctccgtta actgaggagc atggtgataa
      901 ataaaggtaa atgcagaagg tgtagagtct cgcagatttc tgacatcata gagcctaaca
      961 ttagatgcat aacgctacag attgtagaat ctctacaggt gaaatataca ctggttggcg
     1021 tttatgtcgc aaaacatgtc attcaggttc atctcaccaa taaggatatg agtgaagtgg
     1081 aggataagtg agtctgctgt cagagttttc tggtgtatgt cagtaactgc agaaccatgt
     1141 ctgcttgata tgggagctta tggaggctct ctgtacaagg ttagggagct aacaaagcag
     1201 ggataaaaag tccgcctgat gcaggcacgg ttcgttaaat cttttgccat tggtaacaaa
     1261 atggtgcgat gaatgttcag gctatcttta tcttgatggt ggttcagctg tttggtaaag
     1321 aaatcgctgt aacaatagaa gaactgcagg cagtactggt cccacattgt ttgctcagtc
     1381 aactggtgaa gttccgtagc gcgtaaatta atgctttgca tgaaacgtta ctggagtgga
     1441 tgaaagaata cctgcatata tcattactgc gttggattac cagtacaaca gattgaatga
     1501 actggacatg ttgatagacg gcattgaaaa gcagcttata agcatagtgc ggcagagtta
     1561 attggagagc acttcgcctt ctgagtatta agtaatcatg gtggtacctg cggatactat
     1621 ctattcactg tgctcggtcg gcagccttac tgaccaagga gttgggggag ttgataacaa
     1681 agttgaaaaa acagctctca accaaggtgg ttattgtaac aatagcaaat aagctggtgt
     1741 gacctgtatc acaataaccg attatggacg taaatacgac aaaaatatgt cagtatcagg
     1801 cggtattaat tgctgatgct gatggacatt aactcttaat aaaagggtgg atgctgaaag
     1861 gttgttatgg tgacggacgt gatgacgacg gaaaagagta tgaggttttg gatttaaagt
     1921 tcgttcgggg aataaggacc cggtcagcta attctcatag tagttcgcat tgctggatgc
     1981 aatactgtgc tgcaattact cgtcgatgtc ggaacaacgg aagccttgca aacggggatg
     2041 tattcataca ggtgttatgt tatatggggt tttattgcag ggggctatac caagagaata
     2101 tatgatatct catcagactg atgtgagggt aaatgagaat agagtaaacg aacaaggttg
     2161 ttttttggcg aggaagcaga tgtatgacaa ttcttgtgga gctgccagtt tactctgtgc
     2221 tgcaaaggaa ttaggggttg ataaaatacc acaatacaaa gggtctatgt ccgaaatgac
     2281 aaggaagagt tctcttgatt tggataatcg ttgtgagcgg gatttatact taataactag
     2341 tggtaattat aatccgagaa tacacaaaga taatatcgcg gatgccggtt attctatgcc
     2401 tgataagata gtcatggcta cgaggcttct tggattgaat gcttatgtcg ttgaagaaag
     2461 taacattttt tcgcaagtaa ttagttttat ttatcccgat gcaagggact tattaattgg
     2521 catgggatgt aatatagtac atcaacgaga tgtgttatct tctaaccaaa gagttttgga
     2581 agctgttgct gtatccttta ttggagttcc tgtcggcctc cactgggtgt tgtgtagacc
     2641 tgatggaagc tatatggatc cagctgtagg agaaaattat tcttgttttt caactatgga
     2701 attaggtgca agaagaagta attctaactt tataggatat actaaaatag gtatttccat
     2761 agttataact aatgaggctt tgtaaattgt cgttttttat ctgtgaagga gcttgaatat
     2821 tttggggcgg ggggcataac aaatgatatt actgagtaca aatttagcta tattgggcgg
     2881 attagttgtg tgggaagatg aaatgtttct cttgaaataa gtgaactccc tcaaggaatg
     2941 attgtgtgct taaatattta agtgctggta agtttgagaa ggctgacata ttttgcagag
     3001 caaacagtga ttgacttgga tgatattttt attttaatca ctcgttgtaa ttggagtatg
     3061 ctttatttta tttgaaaata gatgtatttt atacccgcaa tttaaattgt aagccctatg
     3121 aggggtatgg atattataag ttactctttg actaagcata acttttgggg ttagaaaaat
     3181 aaatctcttg ttaataatta atatgatttt aaaatcaaac ttgtttataa ttataaaata
     3241 atgtaagtcg gtcattttat gggaagatta ggagaataaa acagtaatta tatttgagaa
     3301 atctgctaat atattcttaa agcttttttg atactgtgaa cgaagtctgt taatggtgga
     3361 ttttttgttt atcaccatgt aaaaaaattg agtagtaaaa gcgttgactg ctaatcctcg
     3421 ctgtttttat tgaaacgatt aaaaatacgc tgaatatttt cggccagtca ctcatcttca
     3481 cataaaattt tgaccatcat gccgcatccc ttagttgcac aattcatttt caatgatatg
     3541 aatattacta atttcaccag ataatgttct cgtggtcagc agggtatgag ttttcaccgt
     3601 aattttaagg aaacacagtg cgtggggatt gaataacaga tagccgacgg aattacccca
     3661 ccggctgaaa gtcaagttca acgaagattt ttattatctg aattgggcag tttacatcag
     3721 tgttcgatgt ttatgaagac gatagatggc gagaaattat atctcgaata gcttcatcta
     3781 tttctctctg aactgttttg tttattttag ataatgtaaa tattagagtt ctgtttgttt
     3841 tattctcttt tctttttatg taagtccgtt tgtctttaga aataaataac gagtcaactt
     3901 ttagcgaagg gttttgcttt ctgtttttgc ttttctttat gatgtttaaa atttcttttt
     3961 tatatatgtc cgggggcaaa tttgtatcaa ggtcttttat ttcttccttt aatattggta
     4021 gtgtagaact aagagattca ttagcctttt caagtccttt ataataattg aataatatct
     4081 tgtagtcatt aaagttaagt tctgacgcga ttggaaatag agatattatt tcctgtggaa
     4141 cgcttgctgc ctgaaaggca cgagtgactt tcgcgcgaga cagattctct tttttggcta
     4201 tgtctttata ggacatccct gatactttca gaaaattaag accaatacca agttctcgga
     4261 tgctatgctc ttttgctgtt tgtatatcgt ttgctagttt tctggcatca agagtagata
     4321 tatattcttt tgaatataga acttcaagat ctgctcctgc atatattgca gatgctcttc
     4381 tacgagtgcc atccagaatt tcaattctac catcaatctc ccttcctatt acagggaaga
     4441 attgttgtag ctttatagtt tttatgatat cggctaatga ttcttctgtt agggattctt
     4501 gatcgcgtac attcgttttt tggttgacga aggttaaatc ttggatcctt ttatgaggaa
     4561 tcttggcttt gataaaggaa actttattac cagaatggag tgtaaactct ttcttttggc
     4621 cttcctttat acttaacaag tcgttgcaca aatccaccat atcacaccct gtttattcat
     4681 attgatttat attgacaaaa gttaaatgca gtgtgagcaa gattgtatgt aactgttgat
     4741 gatagtcaac ggtagtctta aaaattacta ttttaatagc tggattgatg caatttatct
     4801 ttattggata aaagaataat attcttgtgg agctctgatg tgagagctcc atagatgaaa
     4861 aaatgcttat caattactat attgattttg tactattttt gactacagaa ataagatctc
     4921 caatagtaat aatgtgttct aatgcagatt catctatacg tagattgaac tcaaaactaa
     4981 tcatatccag catttcaatc agagaaagag aatcggcaga aagatcttca ataaatttag
     5041 tttcttcaga tagtttgctg tacgctatac catagcaaaa ggccactatt gataatattt
     5101 tttcttttat catattttaa tccttattga tattctttaa tacttttgat agggaagtgg
     5161 ttacatcttt tgctgcttta tatatattat tgttttcagc tgtaatatca ttgttatttt
     5221 ttaaatcaga tatatcatct gtaagtaatt ctgcagaggt atcgtcaatt tttgacaata
     5281 ccttgctgag ggcgctagat acttcttttg ccttttcata gatcgcatga tttttatcaa
     5341 ttgtatctgc gttggtttct gttacgtagt ttattgtatt tgcatctgta acttttaatt
     5401 tgttgtttat tctgtgttct gttgtggatt ttgtaatgtc ctttgatttt tcctgtaact
     5461 ctcgttcttg tgttcctgat ttagttccaa tgagagatat aagattactt agggagtttg
     5521 ttactttttt tgaagcttca aatatcgttt cccgtgttaa atatgtgtct ccatttcttg
     5581 ataaaaaatc agtctgaagt acttttgaat cagtgtttga gttgaattta ttgatttgcg
     5641 aagctactct atgagaaaga gaagcgctac ttttagttgt atctgatgag ttatcattac
     5701 tgcttgtcac tccttccggg tggagagggg gggtggttga agagttctgt atgttcagag
     5761 gcctgtgtcc ccgagaaaga gagttatttg tagatctttc ttgactactc gtagttaaca
     5821 ggtctgaacc tattccatcc gaattatctg gagtatggtt gaaaaccttt tctaaagctg
     5881 aattatttgc aaatgtctgg acagtatctg atatagagtg tggtagaacg gaagttactt
     5941 tttgaactag tgctctttgt ggatttagta atgagtttcc gttacgggat aatagatcgt
     6001 ttgtctgaga agtaggagac tgtgcatcat tttctgggtt ctcgtgatag ctattgtcat
     6061 atactctgtt gtcaaaaact ctattatcgt aagttctatt atcattattt atatgatagt
     6121 gaattacagg ttgggatgtt ttctcattgg ctccgggggt tggtccgcca tctggcatat
     6181 cttcgggagg tgtagggagg ccatcttgga taggatgcga atcttttata tcttctaaaa
     6241 tatcattaag gacttttctc aacagctcag gaaacacggc tactgtattt aagtctcttg
     6301 acagtttacc tataccaaat cctttactat caatagtatt tttacgttga ttgcgcaaac
     6361 tatcaaaggc aagttttgcc tgtgcgtcaa ctaaatcatc tagtttgaga gatgaaacag
     6421 tttcattact taactttaat tcagcaagaa tattattctt gataaatgat gatacttcag
     6481 tattgaggag tttttgtccc aatgataaag cttcaccaga tgtgtgttgt tgtgctaata
     6541 gtgcaagtct gtgctcaatg ttttgtcgta attgatggag tttcttattc tttgccgacc
     6601 atggtccaaa ggcagaatct tgggataatt tatcttttat aattagttcc gaatactgtg
     6661 cgacaatttt ttgaagtccc ttttcgtttt caaaattaag atcattttga tgtactaagg
     6721 agtacaaaac atttgaaaat tcgagaatct cgcttttggc atacgcattc attgagttgg
     6781 aataaatgct tcttaacaca tcttctttcc ctgaggaaga aaataaaaaa tcaagacatt
     6841 tctgattaaa agacgttgca aagttttctt tttcagacac tgatgctggt gtttttagag
     6901 aagtttgcga actatggata tcggatattt tgctttttaa ctcgctgtat tctgttgatg
     6961 atggtgaagt tgccttatat aagaatgttg gcgcttgagt attatttaca ttatgcatgg
     7021 cgcacctcag aaatggagaa aaagtttatc tgtatctgta catgagctta ttgtactact
     7081 caaaaccttt actaaattat caaaaatact attggcatta ctgtattttt gaactaaagt
     7141 ttgaagatta tttttcattg tttcatcttc ggcagagaat ccggcattcc atgcctgata
     7201 ttttgcatta tctagcacaa cctcgccatt tccacctaga ttatttaagc tttttaacat
     7261 attgtctatt ggggtcatgt ttatattgac aacatatccc ccgttttttt cagatacctt
     7321 gccgattgtt ccacctaatt ctgtaagcca tttatttgct tgttccttac taacagtatt
     7381 atttgctgga tatagcggtt tatctttata tttttccttg agctttgtca attcgtcttt
     7441 aagcgatttg acttgtaatt tcacggagtt tccgtcgtta cctccgggag agatccagcc
     7501 ggcaagactg gaaagaacag cgctaaaatc ttgatacatt tgagtatatg aactaacggc
     7561 atgttcatat actttcagat actgttcatt aatattattg attgactttg caattttatc
     7621 ccacagttct ctgtgagata tcatttcata tccatcaagc tcggcttctt tcggggctga
     7681 atgtaataat tctcttgcgt ctttattaat tggatattct ttcttggaaa gaatatccaa
     7741 tagttgagcg gatttgttta catccatgct aatctgagat gaatgtaatg ctatttcttc
     7801 tagcgatgtt ttagtcaacg ttttttgtga gagatctttc tttaatgcct gatttgttgt
     7861 tctgatatta tgaagggtgt cgttgagcat agtaagggaa cttacaggat gagaactggt
     7921 cgttgttttt atatcagaat taactgtttc ggttgatgaa ccgttggtat tgtttgggct
     7981 gaatgatgag gtggaaatac tattagtcag agttgttata ttcatggtta tttccttata
     8041 ggaagagcca tatattatta tggctcttgg atatattaag ctcgaatgtt accagcaatc
     8101 tgactggctg tagaattcct tgattggttg atgttgtcaa ttatattcaa taatttttgt
     8161 attaattgat ttgtcgcttg ggatgcttct ttagatactt gggatgcttc ctctgcttgt
     8221 ttactgctgg cctgactgat tagttgttct tcttcttcaa gagcagatgt ataacgccct
     8281 cctgatgtgg atatattacc agcaacggct gatgtctcca ttgttgcacg gccaatgttt
     8341 tgtttttgct gagcagaaag ggtattgagc tcgtaagctc ttctctgggt gtcaatttta
     8401 tcctgcaaag aaatatcggg agaactaaga gaagttttat gttcagttga cagggatata
     8461 ttatctggtg ccagtttatt tttacctaaa atttttgtgc tagagttagt ttgtggtgag
     8521 gtgatatttg tatctatttg tttatttaac cctaatttag aacctgcaag ctctttttca
     8581 agagattgag cagtggcaag gttctttctt aaggctcctt tttgttcgct aatccctgaa
     8641 tgcgtttttt tggcaccgat acccgttata cctacttgtg tgaccgctcc agtaatgctt
     8701 gatgataggg ctgctaggcc ttgccgaaca atgttctctg cagctgattt tgtagcatcg
     8761 aacgcaatca atgacaattg agagcccaat ctagtttctg cagtgcggag agcagaaagt
     8821 agaacggcta cactaataat taaagaaaca gcattagaag aaagactgga aatatccagg
     8881 gtgttctctg gggtaattgt gtgactcatt tctgaaagat ctttcatctt tttgtcagta
     8941 aggcgagcaa tgatttctga atcatgctga acctgctctg ataactttaa aagttgatca
     9001 tcatttaatg tagttgttaa tacgggattt ttaccgacat taagtggaat atgtgctgct
     9061 aactgctgat aattttgtga tttttgtgtt tcggaagaac tttgagtttg ttttgtagat
     9121 atatctgtat ataaaatcgg ggctgatttt gtgttttgaa tttccataac attctcctta
     9181 tttgtatcaa gcagtagttt gttgcaaaat tgcttttgca acatcagttc tattagcctg
     9241 agagttggac attgaggcta acagctctgc aattacttcc tgcaattggc cgaatttttc
     9301 tattgcgtca ccgatgtatt ttgacagttg ttcaacttga tatttcgata atgtcaggtc
     9361 tgctagattt ttcgacgcgt tgttttggaa aacagcagaa gcgacatttc ctcccgcttg
     9421 tgtggcagag ttaacacttt ctcctaataa aactgcttgg tttaaatggg tggaaataat
     9481 ttgtttggat attacttcat cacccgctgc accaagaaat ttatttaatc tggcaactgc
     9541 attagtgatt aaatcgtcca gttgagaaga aaaattcttg agaaactttg gtataaggtc
     9601 tgtgagggtt ttacctatta ttttgccaat attctctgca agttttgctg ctgcctgttt
     9661 accaacagtg gctacgagaa cgactgctgc aaccaagaca agagcgcctg cgattgcccc
     9721 cagaatagag ccaatcattt tggctttttt cgagtcgacg cccaagcctt cgagcatttt
     9781 tgtaaatgca tctgaaagga gtttgattaa gggttcaatg actgctttca tgatcggatt
     9841 cagggcttgt tccatgaagg aattgccggt cgctgcttgt actatagcat ccgtaaccat
     9901 aagagctaaa ccaacagctg ccagtgctag agatgctcct ccagaaaaag ctgctgcaac
     9961 aacactaacg atagttaaaa gtgccccaag tattttccca acacaaccca ttactctgtt
    10021 gagttcttct gctttacgta cttcagcagc atactcatca gattttctct ccatttcagt
    10081 ttttcttgat tcttggagag actggaatag agccagatca ttttttaaag attcttcatt
    10141 attttttcca actagttgaa taaaggttgc catcaattga gtaacactgg caagtccggt
    10201 taatgatttc tgctgggttg atagctgttc agcagatgct gtgtttgaaa atgcagaaaa
    10261 agagtctatt tctttttcga gttgcattga tttatctgta agtttgctat gaattgacag
    10321 agttttctgc tcaatcaatg tcctgtcttt aactgctgcg tcttttttga tagtgagttg
    10381 tatttcttcc cgtcttaatt ttttattttc tggtgaatct ggggcgagtt cggataatct
    10441 tgtttgaatt tggttaattt tattttctag gtcttttatt ttagaatctg cgttttttag
    10501 tttattaatt tgtttttcat agtctctggt tagtccttca gtttcagata gaagagtatt
    10561 aattttatcg gagaattcta ggtttttttg ctgtcttgcc tgttgttggg acttccaggc
    10621 agtaatttta tttgttaatg cagttaaaga tttttcacca agtatttgaa taaggtttcc
    10681 aattaaaagc gttagttggg aacttgcatt taatgacttt ggtgctttaa gttcagggat
    10741 taatatattc gaagttgagt gtgcattagt tgtattaata tttttgttag cagcaagatc
    10801 agcaattgta agagaaaata atttgttagc tgcatcattt gcagcctgga tagtattgtc
    10861 tccaagctca gtggaagcca atattttggc aagaggcaaa ccagtggttg tggtgcttac
    10921 attatgcata ataattactc cttgatatcc tgaattgcgt ctaagtatga ttgtgctttt
    10981 atttttaatt tttcatcatt gctgtgttga attacgagtt cgaagcactc tttggctttc
    11041 aagggggctt tcaaccgaag ctggcattgt ccagtatgga ataccggtgt atagtcattt
    11101 tttcctaatg caaaagcgac agcataaagg tctgctgctt gttggaactg ttcttttatc
    11161 tgataaatag ctgcgagtcc cataatgtag tctacattgt aaaagtcgta tatacataaa
    11221 aatctgaaga aaacttcagc ttcctctatt cttcctttgt tgtaaaagtc ataagcatat
    11281 gaataaatgt catccatcat atcatcagga attgcattaa tatctttcag tgtagcgcca
    11341 gagttaattg catcaattac tgcagtagag atgctttcat tttcagtgat atttaaagac
    11401 ataaggtctc ctttttgtct gcattacttt aataagtata agatttaata taaacagatt
    11461 taatttgtat tgctttgacg gtatacagcc tttagaacct ctgcgcttat ttctatttgt
    11521 aaaacttttg ttgattcatt aaatatttta tcgtagacgg aactggatac tagatttgta
    11581 agatccttca tttgtgtgtt aaacaaatcc atgtcactgc tataacgttt taaaatcttt
    11641 gctctgaggc cagatgaggc aatctcgttt agtgctgtat gactgataga tgtttgtgct
    11701 gatttttcat caagttttat atccgggaat tttttttcaa tagctgcaaa tatgtttttt
    11761 ttgttatctg aggtcaaaac aactccattg tgtatggcca tttcatctat acttctgttt
    11821 atcattgaag agacataaga ggttcgctct tggctcatcc aacaaaatag ttgattcccc
    11881 gaattactat cttttatttt gtctatgacg ctgtccctga ttttatttat attcaccggg
    11941 catccaaaat tcttctgagg aaagcgttgt tttaagttaa aaacagataa tattttcttt
    12001 acaagcttat tgtgacttaa cgaatcaaat gatgggcgag gaatcgcgaa ttcaacctgt
    12061 ggaagtattt tgtttagaat ttgcatgata ccccctatat gttagttcac ttctgaagtg
    12121 atgtttgcaa tggttagttt aatacaaaat aaaaattcgt acaaagattc aatgagttca
    12181 tcaggtgaaa gatatttttt gtagtgtttc ttggtcaaaa cacattgatg agtatcaggg
    12241 agaagacaga tagaagaacc ataatctcta ctcaaagagt agttaaggat gagtatgtgt
    12301 tctggattaa taatattttc tgtaaaaagt tcatgttcat taagaagtcc ggtcaaaaag
    12361 atgtattcat cattatctgt tatacaaaca ggtatttgtt cttcgagcaa tataaaggct
    12421 tgatttttat cgttaaaatc aagctttgca cctgttattt cataaagttt atcatatagt
    12481 ttgcgacaca tttctatggc cttctatata ttagaatgag agttattcaa taaaagctta
    12541 ttgacctgta ataagtcgtg aatgtaaagt ttggttccaa gatctggcga tttaagagaa
    12601 ttgtaataat caatagtttt tattgacttt tcgataatta cttctttttt atctgttgct
    12661 ccggttttta attcgtttaa tacacgagac atattgctgg gtgctgattt tactaagtat
    12721 gagtggcaag cgttgatgac cgcatcaaag tcttctgaag atacattttc agtaggatgt
    12781 ttgtaaagtg aaattgataa aggcttgaat gtttttgggg tgtggataag gttaatttta
    12841 ttgaaacttt taagatagct acgtcgtaat tgagtcaatc tggaaagatc aaaatcagat
    12901 tcaatatact tcattatctc gttataagac tgattgagac tttcaatgcg ttgcctaact
    12961 ttatttgcat acgcgtatac attgttaggt gtagcaacca atttaacgtc agggagtgga
    13021 aagtatattt cagaatttcc tgctttaaga acattaagtg ccataccagc acagttttca
    13081 gatttactga ttaatttata atttgccaat tgtctgaaag catctgcttt cttttggcat
    13141 ataaattttg acatgtttgt ttcatcaagg ccaaaaaggt tatagctgat tttaccatcc
    13201 tttgttttat tatcacctga taatggaatg tatactttat cagcactgac cccccaataa
    13261 ccataggggt cttttttttg attagctctg ggaaaaaata tttttttgtt gttattttga
    13321 tcttgttttg aatttaataa gtttctaacc tcttggcctg catcaagtct ttcggctgtt
    13381 tggtctgaaa tcatatttag tttgtcttgt ttataggtat cgacactgta acctgagcgt
    13441 ttttcaaaaa ggtagtttat ttctgtatct tttgtaacat tcccgccggg ataccagctg
    13501 agataggtat gagttggttc ctgtagtaaa ttgtttttta tactgatact ggtatgccct
    13561 aaatgggtta tgcctctatt tccccagcaa cgaaacacta aatgtctttc aagatttttg
    13621 gctgtaccga tgccatgaaa actctctgcg gtattcaaca ttaatttgat gtctttacct
    13681 gtaaaagaat gttgaattga atttttgact gcttcatagg cggcaaacgc actttctgca
    13741 gatttttcgc tagctaatgt cttgaggaaa agcaataagg atttttgatt cgctagtcga
    13801 taatttttta gttgttcatt taatatctgt gaatttatct ttgcattaat agtgcttaat
    13861 gttctgaaaa agagatcctt taggttgaat ttctgtgcta ccaatatagg tccatgctct
    13921 gtatcttcaa cgcgtatagg cccttttgta ttgcttgcgt caatgaaatt gctaattttg
    13981 agaatcatac tttattaact ctccattacg tggtgattgt ggggatgtaa aatgtatttg
    14041 atatataata tattcaatta ataaatttag aaacttgagc ctgttaacat aatcaaattt
    14101 tcttttgctg tacataatat gtacctcgtg agcatatgta gtgctggttt catcatgaaa
    14161 tcccacaagt taaagtgtct gatatatcag gctcggagtg ttatagaaaa agagagaacc
    14221 ctgttgaata agtatctttt ttgttgtaaa acgaggtaca aaactgcaat caatgcccca
    14281 tttatgactg aggataatta aatgcacata actaatttgg gattgcatca ggtttcattt
    14341 caaagcggag attcctataa aggcgcagaa gaaaccggaa accaaaaagg tgtaagcgtg
    14401 atttcatatc aaagagttaa aaatggagag agaaataagg gggtcgaagc gcttaatcga
    14461 ttatatttac agaaccaaac aagcttaaca gggaaaggcc ttttgtttgc gcgtgacaga
    14521 gctgcagttt tttacgaggc aataaagttg gcaggtggtg atacgtcaaa aattaaagcc
    14581 atgatggaac aattagatac ctataaactt ggtgaagttg ataaaagaaa tattaatgag
    14641 cttaataaag taataagtga agagataaga gcacagctag gcattaaaaa taaaaaggaa
    14701 ttgcaatcgg aaataaaaca aatatttact aattatttaa ataataagaa ttgggaaccg
    14761 atcaacaaaa atattaatta taatgggaaa aattatggtt ttcaattaac acccgcctct
    14821 catatgaaga tagggaataa aaatatattt gtcaaagagt ataatggaaa aggaatttgt
    14881 tgtgcttcta cgagagagag taagcatatt gcgaatatgt ggctttcaaa agtggtggat
    14941 gacgagggga aggaaatttt ttcgggtatc agacatggag ttatatcagc ctatggattg
    15001 aaaaaaaact catctgaaag agctgttgca gctcgtaata aagctgagga gttagcaagc
    15061 gcagcattat atagcagaca agaattatta tcacaggctt tgtctggtaa aacagtagat
    15121 ttaaagattg tttcgacttc tcttctgacg ccgaccagtt taactggggg agaggagagt
    15181 atgttaaaag atcaggtaaa ggcattaaaa gagttaaact ctaaaagggg ggaaccaacg
    15241 aaattattaa ttcggaatag tgatggtctt ctgcaagaag taaaggttaa tctaaaagtg
    15301 gtgacattta actttggtgt aaatgaatta gcgctaaaaa tgggcttagg ctggaggaat
    15361 gttgacaagc ttaatggtga atcaatatgt tctttgttgg gggataattt cctcaaaaat
    15421 ggtgtgattg gaggttgggc tgcagaagct atagaaaaaa atccaccatg taagaatgat
    15481 gtgatatatc tggctaacca gataaaagag attctaaaca agaagttaca aaaaaatgat
    15541 aatggagagc cgtataaatt gtcacaaaga atggctctat tggcttatac tataggtgct
    15601 gtaccttgct ggaattgtaa gagtgggaag gacagaacag gtatgcagga tgctgaaatt
    15661 aaaagagaaa taataagaaa acatgaaaca gggcagtttt ctcaattaaa tagtaaatta
    15721 tcctcagaag agaaaagatt attttctact attctaatga atagtggtaa tatggaaatc
    15781 caagagatga atactggtgt gcctggaaat aaagttatga aaaaattacc gctatcttcg
    15841 ttagagctgt cttatgctga aagaataggg gaccccaaaa tatggaatat ggtgaaaggg
    15901 tattcgtcat ttgtataaga ggaatatatg gaagatttag cagatgttat ttgccgagcc
    15961 ttgggtatcc cttcaattga taccgatgat caagcaatca tgcttgatga tgatgtgtta
    16021 atatatattg aaaaagaagg agattcaata aatttattat gccctttttg tgcattgcct
    16081 gaaaatataa atgatcttat atatgcgttg agcctaaatt actcagaaaa gatatgttta
    16141 gctactgatg atgaaggtgg aagtctaatt gcgcgattag atcttaccgg gataaatgaa
    16201 ttcgaggata tatatgttaa tacagaatat tatatttcgc gtgtgcgttg gctgaaggat
    16261 gaatttgcgc gaagaatgaa ggggtattaa tgtcccgttt cgtatttatt tttctgtgtt
    16321 ttatcccata tttagggaga gctgattgtt gggataaggc tggtgaaagg tacaacattc
    16381 catcgagttt gttaaaagcg attgcggaaa aagaatccgg atttaataaa tttgcagtca
    16441 atgttaataa caatggaagt aaagattatg gtataatgca aataaatgac tttcattcta
    16501 aaagacttag agaaatggga tatactgagg aaatgctaat tagtcatcca tgtctttctg
    16561 tacattatgc agcaaagtta ttaaatgagt ttatgctgat gtatggaaga gggtgggagg
    16621 ctgttggtgc ctataatgca ggaacatctc cgaaaaagaa aaaagaaaga ttaaagtacg
    16681 cagaggatat ctataaacgc tatttgcgga tagcagcaga gagcaagcag aataatcgaa
    16741 ggatataaga ggatttatgt ctgaggcaaa gaactcaaat cttgcaccat tcaggttatt
    16801 agtgaaactc acaaacggtg tcggggatga gtttccgtta tattatggga ataacttaat
    16861 tgttctcgga cggacgatag aaacacttga gtttggaaac gataatttcc cagaaaatat
    16921 tattccagta acagatagta aatcggatgg tataatttat ttggccataa gtaaagataa
    16981 tatctgtcaa tttagtgatg aaaaaggtga acaaattgat atcaattcac aatttaactc
    17041 atttgaatat gacggagttt cttttcaact taaaaatatg atggaggata aatcgagagt
    17101 tcatatacta aacggaatgt ataataaacc ctcggtgttt tttttctttg ctgttattgt
    17161 tgtgttaatt ataatttttt ccctctcttt aaagaaagat gaagtaaaag aaattgctga
    17221 aattatagat gataagagat atggaatagt caacacagga cagtgcaatt atattcttgc
    17281 cgaaacacaa aatgatgcgg tatgggcatc tgtagcctta aataaaagcg gatttaccaa
    17341 atgcagatat attctggtgt ccaacaaaga aataaataga attcaacaat atatcaatca
    17401 acgattccca tatatcaatt tgtatgtgtt gaatttagtg agtgataaag cggaattact
    17461 ggtattttta agtaaagaaa gaaatagttc aaaagatacc gaacttgaga aattgaaaaa
    17521 tgctctgata gttgaatttc cgtatatcaa aaatattaaa ttcaactatc ttagcgatca
    17581 taatgcaagg gaggatgcta aaggtatttt cacaaaggta aatgtccagt ataaagagat
    17641 ttgtgaaact aataaagtta catattctgt cagagaagaa ctgacagatg aaaagcttga
    17701 gctcattaat agactgattt ctgatcataa aaatgtatat ggagatcagt atattgagtt
    17761 ttctgtactt ttgatagatg atgattttaa aggtaaatca tatcttaaca gcaaagacag
    17821 ttatgtaatg ttgaatgata aacactggtt ttttttagat aaaaataagt gaggataaaa
    17881 tgagtgttac agtaccggat aaagattgga ctctgagttc attatctgaa acttttgatg
    17941 atggaactca aacattacaa gggcaactaa cattggcact aaatgcatta gctgaaaatc
    18001 cttcgaatcc acagttgctg gctgaatacc aaagtaaatt atctgaatat acattatata
    18061 ggaacgcgca atctaatact gtgaaagtga ttaaggatgt tgatgctgca attattcaaa
    18121 acttcagata atagggagca ttcatgaatt acatttatcc agtcaatcag gttgatatta
    18181 tcaaagccag tgattttcaa tctcaagaga tatcaagcct ggaagacgtc gtgtcggcta
    18241 aatatagtga tattaagatg gatacagata ttcaagtatc acaaataatg gagatggtaa
    18301 gccatccaga atcattaaac ccagaatctt tggccaagtt acagacgacg ctctcaaatt
    18361 attcaatagg agtatcatta gctggcacgt tagcaagaaa aacagtttcg gctgttgaaa
    18421 ctttattaaa gtcttaattt atatgattag gtataaatgt tttattttat tcttgttgct
    18481 gatgttgatt ggatgtgagc aacgtgaaga gttaatttct aatttatctc aaagacaggc
    18541 aaatgaaata atatctgtgc tagaacgcca taatattact gctagaaaag ttgatggagg
    18601 taaacagggg atctcggtac aagtcgaaaa ggggacattt gcatcggcag ttgatttgat
    18661 gcgcatgtac gatttgccaa atccggagag agttgatatc tcacaaatgt ttcctacaga
    18721 ttcattagtg tcttctccaa gagctgaaaa ggcccgttta tatagtgcta ttgagcaacg
    18781 gctggaacag tctttagttt ctattggtgg tgttatttcg gcaaaaatac atgttagcta
    18841 tgatcttgaa gaaaaaaata tatcttcaaa accgatgcat atatcagtaa tcgctatata
    18901 tgactcaccg aaagagtctg aactattagt tagtaatatt aagcgatttt tgaaaaacac
    18961 cttttctgat gttaagtatg aaaatatatc tgtcatatta actccgaaag aagaatatgt
    19021 ttatacaaat gtacaacctg ttaaggaaat taaatcggaa tttttaacaa atgaagtaat
    19081 atatgtattt ctcgggatgg ctgtactagt tgtcattctt ttggtatggg cattcaaaac
    19141 aggggggttc aagagaaaca aaatatgata agaatggatg gaatttataa aaaatatctt
    19201 tcaataattt ttgatccagc gttctatata aatagaaatc ggttgaattt gccttctgaa
    19261 ctgttagaaa atggcgtaat cagaagtgag attaataatc tcataattaa caaatatgat
    19321 ctaaattgcg atattgaacc tttaagcggg gtaaccgcta tgtttgttgc caactggaat
    19381 ttacttccag ctgttgctta ttttatcggt agtcaagagt ctcggttaat taatcatagt
    19441 gagatggtta ttagttatta tgggggcaaa atcagtaagc aaggggaggc cgctattcga
    19501 agtggttttt ggcatcttat tgagtggaag gaaaatatat ctgttggtat atatgaaaga
    19561 ataaacttat tatttaatcc aattgctttg gagggaaatt atacgcctgt agaaagaaat
    19621 ttgtcccgat taaatgaagg tatgcaatat gcaaaaaggc actttaccgg tatccagaca
    19681 tcatgcctat gatggtgttg ttataaagag aattgaaaag gaattatgta aaaccataaa
    19741 agatagagac actgagagta agaagaaagc aatttgtgtt ataaaggatg ctacgaaaaa
    19801 agctgaatca ctgcgtatag atgctgtatg cgatggttat caaattggta tacagactgc
    19861 ttttgagcat attattgact atatttgtga atggaagtta aagcaaaatg aaaacagaag
    19921 aaatattgag gactatataa ctagtttgct ttcagaaaat ttacatgatg agaggatcat
    19981 tagcacttta ttggagcagt ggcttagttc gttgcgtaat acagtaacag aattaaaagt
    20041 ggttttgccc aagtgtaatt tagcactgag gaaaaagtta gaacttgatc tccataaata
    20101 tcgctcagat gtcaagatta ttttaaaata ttctgaaggg aataattata tattctgtag
    20161 tggtaatcaa gtagtggagt ttagtcctca ggatgtaata tcaggtgtta aaatagaact
    20221 tgcggaaaaa ttaacaaaaa atgataaaaa atatttcaaa gagttagcac ataagaaact
    20281 gagacaaatt gcagaagact tgttaaaaga gaatcctgtt aatgattaat caaataaatg
    20341 caagcaatgc tctgcagcaa agattaaata gtgaagaatt tgttaattta aatgagagat
    20401 tatcatcttc gcaatcattt gatgagaata taatctatga aataatgcaa tatttctcac
    20461 agagtgaatt aaattccata gataatgatg aactgcacaa taagattgaa caattattca
    20521 attcacgttt tccttatctt acagctgcac aaaaaagttc acttcttaat aaactcatag
    20581 atgcaaatca atatgtcgat ttgcatgagg gattttatgc atcattgtcc atatataaca
    20641 atattgattt ctatattaag actacaacct tcgattcatt aattagtgtc tttgatgcag
    20701 ggagagaggc agatgattcg acatggtagt aataagttga aaatatttat tttaagtata
    20761 ttgctattaa cactgagtgg gtgtgcttta aagtcatcat ctaattctga aaaagaatgg
    20821 catattgttc ctgtaagtaa ggattatttt tctattccaa atgatttatt atggtcgttt
    20881 aatacaacca ataaaagtat aaatgtttac tctaaatgta ttagtggtaa ggcggtttat
    20941 agttttaatg caggtaaatt catgggcaac tttaatgtta aggaagtaga tgggtgcttc
    21001 atggatgcac aaaagatagc tatagataaa ctattttcta tgctgaaaga cggggttgtt
    21061 ttaaaaggta ataagataaa tgataccatc cttatagaga aggatgggga agttaaatta
    21121 aaattaattc gagggatata attgtattgt gagtaaatat aaaggtctaa atacaagtaa
    21181 tatgttttac atttactcta gtggacataa accagttaac gttgagcttg taaaagataa
    21241 agaacgtaac ataattgagc tggctccagc atggaagggt ttttttttgt ccgaaatcaa
    21301 aatataaaat tcagtgataa tgtgaactat cattatcgct ttaacattaa tagttgtgca
    21361 aaatttcttg ctttttggga ctatttcagt ggtgctctag tagagcatag ccatgctgaa
    21421 aaatgtattc atttctatca tgagaatgat cttcgggata gttgtaatac cgaatcgatg
    21481 cttgataagt taatgttaag attcatcttt tcatctgacc agaatgtaag taatgcactg
    21541 gctatgatac gaatgactga gtcatatcat ttggttcttt atcttctgag aactattgag
    21601 aaagaaaagg aggtaagaat aaagagtctg acagagcatt atggtgtgtc ggaggcttat
    21661 tttagatctt tatgtagaaa agctttaggg gcaaaagtca aagaacaact gaacacttgg
    21721 cggttagtaa atggtttatt agatgtattt ttgcacaatc aaacaatcac ttctgctgcc
    21781 atgaataatg ggtatgcatc aacatcccat ttttcaaatg agataaaaac acgactaggc
    21841 ttttctgcaa gagaattatc gaatattact tttttagtga aaaaaataaa tgaaaaaatt
    21901 taatattaaa tctttgactc tcttgattgt attgttacca ttgatagtta atgctaataa
    21961 tattgactct catttattag aacaaaatga catagcgaaa tatgttgctc aaagtgatac
    22021 ggtaggatct ttttttgaac gtttttctgc gttattaaat tatcctattg ttgttagcaa
    22081 acaagctgca aaaaagagaa tatctgggga gtttgattta tctaatccag aagaaatgct
    22141 tgaaaaaatg acattacttg tgggactcat atggtataaa gatggaaatg cattatacat
    22201 atatgactct ggagaattaa taagcaaagt tattttgctg gagaatatat cacttaatta
    22261 tcttattcag tatctgaagg atgctaacct ttatgatcac agatatccta taagaggaaa
    22321 cattagtgat aaaacattct atatatctgg tcctccggca ttggttgaac tggtagctaa
    22381 tacagcaact ttgcttgata agcaggtttc ttctattggg acagataaag ttaattttgg
    22441 ggttataaaa ttaaaaaata catttgttag tgacagaact tataatatga gaggggagga
    22501 tattgtcatc ccaggggtgg ctactgttgt agaacgttta ttaaataatg gtaaggctct
    22561 gagtaacaga caagccaaaa atgatccgat gccacccttt aatattacac agaaagtatc
    22621 tgaggatagt aatgactttt catttagttc agttaccaat agttctatat tagaggatgt
    22681 atcacttatt gcatatccag aaaccaattc tatattagtc aaaggtaatg atcagcaaat
    22741 acagattatt cgcgatatta tcactcagtt agatgtagcc aaacgacata tagaattatc
    22801 attatggata atcgatattg ataaatctga attaaataac cttggcgtta attggcaagg
    22861 aacggcttca tttggtgatt cgtttggtgc atcatttaat atgagctcat cagcatcgat
    22921 aagcactttg gacggcaata agtttattgc ttcagttatg gcattaaatc agaaaaagaa
    22981 agcaaatgta gtttcaaggc cggtgatttt gacacaagag aatattccgg ctatatttga
    23041 taataacagg actttttatg tgtcattagt tggtgagcgc aattcttcgt tggagcatgt
    23101 tacgtatgga acattgataa atgttatacc tcgcttttca tctcagggac aaattgagat
    23161 gtctttaacg atagaggatg gaacaggaaa tagtcagtca aattacaatt ataataatga
    23221 aaatacatct gtccttccag aagttggaag gaccaaaatc agtacaatag cgagagttcc
    23281 acaaggcaaa agtttgttga taggtggtta tacgcatgaa acgaactcta acgaaatagt
    23341 atctattcct tttctctcct ctattcctgt aatcggtaat gtgttcaagt ataaaacaag
    23401 gaatatcagt aatattgtaa gggtttttct gattcaaccc cgtgagataa aggagtcaag
    23461 ttattataat actgcagaat ataagagcct catatctgaa agagaaatac aaaagactac
    23521 acaaataatc ccatctgaaa ctactttgct ggaagacgaa aaatcattgg tttcatactt
    23581 aaattactaa ctataaagta ggtgatgtat gcttgatgtt aaaaatacag gagtttttag
    23641 ctctgcattc attgataagt tgaatgcaat gacaaattca gatgatggag atgagactgc
    23701 tgatgcagag cttgattctg gcttggctaa tagcaagtat attgactcat ctgatgagat
    23761 ggcttccgct ctttcgtcat ttataaacag aagagacctt gagaaactga aaggaacaaa
    23821 tagtgatagt caggaacgta ttttagatgg ggaagaagat gaaattaatc acaagatttt
    23881 tgatttaaag agaactttaa aagataacct tcctctagat caggatttta tagacagact
    23941 aaagagatat tttaaagatc caagtgatca agtcttagca ttaagggaac ttttgaatga
    24001 aaaagatctt actgctgaac aagtcgaatc attaactaaa attattaatg agataatatc
    24061 aggtagtgaa aaaagtgtta atgctggaat aaattcagct atacaggcta aattatttgg
    24121 caacaaaatg aaacttgaac cacagctttt gcgtgcatgt tatcgtggtt ttatcatggg
    24181 gaacatatca acaacagatc agtatataga atggcttggt aattttggtt ttaatcacag
    24241 acatacaatt gtgaattttg tagagcagtc actgattgta gacatggatt ctgagaaacc
    24301 gagctgtaat gcttatgagt ttggttttgt gttatctaaa ttaattgcaa ttaagatgat
    24361 tagaacttca gatgtaattt ttatgaagaa actggaatcc tcaagcttgc taaaagatgg
    24421 cagtttaagt gcagagcagc tattgctaac tttattatat atttttcaat atccaagtga
    24481 aagtgagcaa attcttactt ctgttataga cgtatcacga gccagtcatg aggattctgt
    24541 agtgtatcaa acatatctat cttctgttaa tgaaagtcct catgatatat ttaaaagtga
    24601 aagtgaaaga gaaattgcga tcaatattct acgagagctt gtcacaagtg catacaagaa
    24661 agagctttct agataacagg agatgaaagt gatccagtct tttcttaagc aagtaagtac
    24721 taagcctgaa ttaattatat tagtgcttat ggttatgatc attgctatgt tgatcatacc
    24781 attacctaca taccttgttg attttttaat agggcttaat attgtacttg ctattctcgt
    24841 ttttatggga tcattttata ttgaaagaat attgagtttt tctacattcc cttcggtttt
    24901 gttgataacg acattatttc gtctcgcttt atcaataagt actagtcgac taattttagt
    24961 tgatgcggat gcgggtaaaa ttattactac atttggccag tttgtcattg gtgatagtct
    25021 ggctgtaggt tttgttattt tttcaatagt aactgttgtg cagttcattg ttataacaaa
    25081 aggatctgaa agggttgcgg aggtagctgc tcgcttttct cttgacggta tgccggggaa
    25141 acaaatgagc attgatgcgg atttaaaggc tggaattatt gatgccgcag gagctaaaga
    25201 aagacgcagt attctggaac gtgagagtca attgtatggt tcatttgatg gagcaatgaa
    25261 gttcattaaa ggtgatgcaa ttgctggcat cattattatt tttgtcaatt taataggagg
    25321 tatttctgtt ggtatgagtc aacatggaat gtctctatct ggtgcattat ctacttatac
    25381 catactaact attggtgacg gattggtctc tcagattcct gctctgttaa tttctataag
    25441 tgcaggattt atcgttacaa gagttaatgg tgatagcgat aatatgggac gtaacataat
    25501 gtcccagata tttgggaatc cttttgttct cattgttaca tcagctcttg ccttggcgat
    25561 agggatgttg ccaggttttc cgttttttgt ttttttcctg atagcagtta ctttgacggc
    25621 tttattctat tataaaaagg tcgtagaaaa agaaaaaagt ctgtctgagt ctgattctag
    25681 tggctatact ggtacatttg atattgataa tagccatgac tcatctttgg caatgataga
    25741 aaatctggat gctattagtt cagaaaccgt tcctttaatt ttattatttg ccgaaaataa
    25801 gataagtgca aatgatatgg aaggtcttat tgaaaggata agaagtcagt tctttattga
    25861 ttatggtgtc aggcttccaa ctattttata tagaacaagc aatgagctta aggtcgatga
    25921 tattgttttg ttaataaatg aggtgcgtgc cgatagtttt aatatatact ttgacaaagt
    25981 gtgtattaca gatgaaaatg gagatataga tgctctaggt attcctgttg tttcaacttc
    26041 atataatgaa cgtgttattt cttgggtaga cgtttcatat acagaaaatc taactaatat
    26101 tgatgctaaa attaaaagtg ctcaagatga attttatcac cagttgtcac aagctttatt
    26161 aaacaacata aatgagattt ttggtataca agaaacaaaa aatatgttag atcagtttga
    26221 aaatcggtat cctgatctat taaaggaagt cttccgacat gtgactatac agagaatttc
    26281 tgaggtatta caaagattgc ttggagaaaa tatttctgtt cgcaatttaa aacttattat
    26341 ggagtctttg gcgctttggg ctcccagaga aaaagatgtc ataacattag ttgaacatgt
    26401 ccgtgcatca ctttctaggt atatttgtag taaaatagct gtttctggtg agattaaagt
    26461 tgtgatgctt tccggatata ttgaggatgc aataagaaaa gggataaggc aaacctctgg
    26521 tggctctttc ttgaatatgg atatagaggt ttcggatgag gtaatggaaa ctttagcaca
    26581 tgctttgaga gaattgagaa atgcaaaaaa aaatttcgtt cttttggtat cagtagatat
    26641 acgtaggttt gttaaaagac ttatagataa cagatttaag agtatactcg ttatatcgta
    26701 tgctgagatt gatgaagcat ataccattaa tgtattaaag actatttagt gaggtttaaa
    26761 tatgagtaac attaatttag ttcaattagt tagagatagt cttttcacga ttggttgtcc
    26821 tccatcaatt attacagatt tagacagcca ttcagcgatt accatttctt tggatagtat
    26881 gcctgctatt aatatagctc ttgtcaatga gcaggttatg ttatgggcta atttcgatgc
    26941 accaagtgat gtaaaacttc agtcatctgc ttataacata ttaaatttaa tgttaatgaa
    27001 ctttagttat agcattaatg agctggtaga gcttcatcgt tctgatgagt acttacagtt
    27061 aagagttgtt attaaagatg actacgttca cgatgggatt gtttttgcag agattctgca
    27121 tgagttttat cagaggatgg aaatcttaaa tgaggtctta taatcaatga gctatataaa
    27181 attgctcact caattatctt ttcctaatag aatctcgggg ccaatcttgg aaacaagtct
    27241 tagcgatgtt tcgattggtg agatttgtaa cattcaggct ggaattgaaa gtaatgaaat
    27301 tattgcaaga gctcaggttg taggatttca tgatgaaaaa acaatattaa gcttgattgg
    27361 aaattctcgt ggactttcac ggcaaacgtt gattaagccc actgcccagt ttcttcatac
    27421 gcaagtcggc cgtggattat tgggagcagt agtcaatcct ttaggggagg ttactgataa
    27481 gtttgctgtt acggataaca gtgaaattct ttatcgacct gtagataatg ctcctccgct
    27541 atatagtgaa agggctgcaa ttgagaagcc ttttttaaca ggtgttaagg ttattgattc
    27601 tttactcacg tgtggtgaag gacagcgaat ggggattttt gcgtcagctg gttgtggcaa
    27661 aacttttctc atgaatatgc tcattgaaca tagtggtgct gatatatatg ttattgggtt
    27721 aattggtgag cgaggtcgag aggttacaga aacggttgat tatttgaaaa actctgagaa
    27781 aaaaagcagg tgtgttttag tatatgcaac ttcggattac tcttcggttg atcgttgtaa
    27841 tgctgcatat atagccactg ctatagccga attttttagg actgaaggac ataaagtagc
    27901 gctttttatt gattcattaa caaggtatgc cagagcatta cgtgatgtgg ccttagccgc
    27961 tggagaatca cctgccagaa gaggctatcc ggtttcggtt tttgatagct tacccagact
    28021 tcttgaaagg ccaggaaagt taaaggcagg tggctctatt actgcatttt acactgttct
    28081 tttggaggat gatgattttg ctgatccatt agctgaagag gtaagatcca ttttagatgg
    28141 acatatatat ttgagcagaa atctagccca aaaaggacaa tttcctgcaa ttgattcctt
    28201 aaaaagtata agcagggtat ttacacaggt tgttgatgaa aaacatcgta ttatggccac
    28261 tgcatttcgg gagctacttt ctgaaataga agagctaagg acaattattg actttggtga
    28321 atacaaaccg ggggagaatg cctctcagga taaaatctac aacaaaatat ctgttgttga
    28381 gagttttctg aagcaagatt atcgactcgg ttttacttat gagcagacaa tggagcttct
    28441 tggtgaaaca attagataag gttttaaaaa tcaaagataa atatcaacgg tctgttaaat
    28501 taattgaagc acacatatta acactaaaaa aaaaactctt tgtatcgaga tgtggaggca
    28561 ttagataaaa ggattatata cttcctgcaa ctggagaatg acttggaacc tgtaggcgct
    28621 cagagtgtta gtcagctttt caatacaaga cgtaagatcg ctatagtaaa aaagcatatt
    28681 atccaatatc agtctgaacg aattcttcta aagggaagaa ttgaagaaat tcaaaaagat
    28741 attgatgagg caaatgcttc taaaagaaaa ctgcttcata aagagagtaa aatatgtaaa
    28801 cggattggct tgattaaaag aaataacttt gccaaacagt tgatacttga tgagttatca
    28861 caagaggata tgaagtatgg cattagataa tataaaccta aattttagta gtgacaaaca
    28921 gatagaaaaa tgtgagaaac tatcttcaat agataatatt gatagtctcg ttttgaagaa
    28981 gaagaggaag gttgaaattc ctgagtactc tttaattgca tctaactatt ttactattga
    29041 taagcacttt gaacataagc atgataaagg agaaatttat agtggcatta aaaatgcgtt
    29101 cgaacttaga aacgaacgag cgacatattc tgatattcca gaatcaatgg ccattaaaga
    29161 aaatattttg ataccagatc aagatatcaa agcaagggaa aaaataaata tcggcgatat
    29221 gagggggatc ttttcatata ataagagtgg aaatgcagac aagaacttcg aaagaagtca
    29281 tacttcttct gtaaaccctg ataatctgct agaatctgat aatagaaatg gtcaaattgg
    29341 tttaaaaaat catagcttgt ctattgataa gaatattgct gacatcattt ctttactaaa
    29401 tggaagtgtt gctaaatcat ttgagctgcc tgtaatgaat aaaaatactg cagacataac
    29461 cccatccatg tcattgcaag aaaaatcaat agttgaaaat gataaaaatg tttttcaaaa
    29521 aaatagtgaa atgacttacc actttaaaca gtggggggct ggacattctg ttagtatttc
    29581 agtggagtct ggttcttttg ttctaaaacc gtcagatcaa tttgtaggaa ataaacttga
    29641 cttaattttg aaacaagatg ctgagggtaa ttacagattt gatagcagtc aacataataa
    29701 ggggaataaa aataatagta caggatataa tgaacagagt gaagaagaat gctaagaatt
    29761 aaacattttg acgctaacga aaaactacag attttatatg caaagcaact ctgcgagcgt
    29821 ttttcgattc agacattcaa aaataaattt acaggcagtg aaagtttagt cactcttact
    29881 tccgtgtgtg gggattgggt aattcgtatt gatacattat cttttttgaa aaaaaaatac
    29941 gaggtatttt caggattttc tacacaagaa tctttactgc atttatcaaa atgtgtcttt
    30001 atagagtcgt catctgtatt ttcgattcca gaactgtctg ataagattac tttccggatc
    30061 acgaatgaaa tccagtatgc aactactggg agtcatttat gctgtttttc ctcttcttta
    30121 ggtattattt attttgacaa gatgccggta ttacgtaatc aagtttctct tgacttattg
    30181 catcatcttt tagagttttg cttaggttca tctaatgtaa ggctggctac tttaaaaaga
    30241 attcgtactg gtgatataat catagttcag aaactttata atttattatt gtgtaatcaa
    30301 gttattattg gggattatat tgtgaatgat aataatgagg caaaaattaa tctgtcagaa
    30361 agtaatggtg agtcagatca cacagaagtt tctttggcat tattcaatta tgatgatatc
    30421 aatgtaaaag tggactttat ccttttagaa aaaaagatga caatcaatga actaaaaatg
    30481 tatgtagaaa acgaattatt caagtttccc gatgacatag ttaaacatgt aaatattaaa
    30541 gtaaatggtt ctttggttgg gcatggggaa cttgtttcta ttgaggatgg ttatggtatc
    30601 gagattagtt cttggatggt aaaggagtaa tctcatgctg agtgatatgt ccctcatcgc
    30661 tacactttct ttttttacgc tattaccatt tttagttgct gctggtactt gttatataaa
    30721 gttttctatt gtttttgtaa tggtacgaaa tgcacttggt ttgcagcagg ttccatcaaa
    30781 tatgactctc aatggtattg cattgattat ggctttgttc gtgatgaaac ccattattga
    30841 agctggttat gaaaattatc taaatggccc gcaaaaattt gatacaatat cagatattgt
    30901 ccgtttttct gattctggct tgattgaata caagcaatac ttgaaaaagc atacagatct
    30961 tgagttggca cgttttttcc aaaggtctga agaagaaaat gctgatttaa agagtgcaga
    31021 gaataatgat tattcattgt tttccctctt gcctgcatat gcgctaagtg aaattaaaga
    31081 tgcgttcaaa ataggttttt atttatattt gccatttatt gttgttgatc ttgttatttc
    31141 aagcatttta cttgcacttg gtatgatgat gatgagtcca atcacaatat cagtaccaat
    31201 aaaacttgta ttatttgttg cgcttgatgg gtgggggatc ctgtctaagg ccttgattga
    31261 acaatatatc aatgttcctg cttagatgat ggaggtaatg tgtctgatat agtttatatg
    31321 ggtaataagg ctctttattt aatccttatc ttttccttat ggccagtagg tatagctacg
    31381 gttattggat taactattgg tttattacag acagtgactc aacttcaaga gcagacactt
    31441 ccttttggta taaagcttat aggtgtctca atatctttgc tacttctttc tggatggtat
    31501 ggtgaggttt tattgtcttt ttgtcatgaa ataatgtttt taattaagag tggggtttga
    31561 tggacatttc aagctggttc gaaagtattc atgtgttttt aatactcctg aacggcgttt
    31621 tttttagatt ggctccatta tttttctttc ttccattttt aaataacggt ataatttctc
    31681 catctattag aatacctgtg atttttcttg ttgcatcagg attaattact tctggtaagg
    31741 tagacatagg ttcttctgtt tttgaacatg tttatttcct tatgttcaag gaaataattg
    31801 ttggcctcct tctctctttt tgcttgtctc ttcccttttg gatatttcat gctgttggta
    31861 gtattattga caaccagcgt ggggcaacgc ttagtagttc aattgatcct gccaatggtg
    31921 ttgatacgtc tgaattggca aaatttttca atcttttttc tgcagttgta tttctataca
    31981 gtggtggaat ggtctttatt ttagaatcca tacaattgtc ttataatata tgcccgttat
    32041 tttctcaatg ttctttccgt gtctcaaata tcttaacatt tctgacttta ttggcaagtc
    32101 aggctgttat tttagccagt cctgttatga tagtattgtt actatcagaa gtattacttg
    32161 gtgtattatc gagatttgct ccgcagatga atgctttttc cgtatcatta actattaaaa
    32221 gtttacttgc aatatttatt attttcatct gttcttctac tatttacttt tctaaagttc
    32281 aatttttcct cggtgaacat aaatttttca caaatctatt tgttagataa aatattatgg
    32341 caaataaaac agaaaagccg acacctaaaa aactaaagga tgccgcaaaa aaaggacagt
    32401 catttaaatt taaggattta acgacagttg ttattattct ggtagggaca tttactataa
    32461 tatcattctt ttccttaagt gatgtaatgc tcttatacag atatgtaata attaatgact
    32521 tcgaaattaa tgagggtaaa tacttttttg cagtggttat tgtctttttt aagataattg
    32581 gcttcccact ttttttctgt gttctttcgg ctgtgttgcc aacattggtt caaacaaagt
    32641 ttgttcttgc gactaaagct atcaagattg atttttcagt attaaaccct gttaaagggt
    32701 taaaaaaaat atttagtata aagacaataa aagaattttt caaaagcatt ctgcttctta
    32761 ttattctagc attaacaacc tatttctttt ggattaatga ccgaaaaata attttttctc
    32821 aggtgttttc tagtgttgat ggcttatatc ttatttgggg ggggctattt aaggatataa
    32881 tattattttt cttagcattt tctatttttg ttattattct tgactttgtg attgagttca
    32941 ttttatacat gaaagatatg atgatggata aacaggagat aaaaagagaa tatatagagc
    33001 aagagggaca ctttgagaca aagtcgagaa ggcgtgagtt gcatatcgag attctttcag
    33061 agcagactaa atctgatata cgtaattcaa aattagtggt aatgaacccg actcatattg
    33121 caattggtat ttattttaat ccagaaatag cgcctgcacc ttttatttct ctcattgaaa
    33181 ctaaccagtg tgccttggct gtcagaaaat atgcaaatga agttggtata ccaactgtgc
    33241 gtgatgtgaa attagctaga aaactatata aaacacatac aaaatatagt tttgttgatt
    33301 ttgaacactt ggatgaagtc ctacgtctta ttgtttggct tgagcaggtt gaaaacactc
    33361 attaataagt aaaggagatg tgttatatgg gagttaattt ctgtaataaa ataggtattg
    33421 atcagtctga atttgaaata gaatcttcca tcattaactc cattgctaat gaggtattga
    33481 acccaatatc tttccttagc aacaaggata taataaatgt tttactcaga aagatttcat
    33541 ctgaatgtga cctggttaga aaagacattt atcgttgtgc tcttgagttg gtcgttgaaa
    33601 aaacacctga tgatttataa tcattcataa taactctttt gttgatataa atatttttgt
    33661 tgaagatatt tatgtagtca caggatcaat tgtagaaaat tgttatgttt ttgttaggaa
    33721 ctgaactaaa taatatatga taagacagca aaaacgactg accataatcc ttcttttatt
    33781 aggagttgat aagagagact attcatcctg taatgttaaa actctgttat atagtattcg
    33841 cgattatgca aagtctgtaa atgatcatga gatactaacc gagagtaatc gtttattatc
    33901 tcattgcatt tcagatagta acggagcttt ctttaaaagt agtaaatacg ttccccttaa
    33961 gtacttacgt aaaaggagaa tagcacgaaa gataccaaat gattagcact ttgctagtaa
    34021 gcttgctggt aaactatatt gaccgttggg tttgttttga gactgtaatt taaattgtgt
    34081 aattgcctgt ttttgatatg tttactccaa caacggagac aggtaaatta tggacgaaaa
    34141 gaagcttaaa gcccttgcgg ctgaactggc taaaggcctc aaaactgagg ccgacctcaa
    34201 tcagttttcc cgtatgctga cgaaatatcc cggctcttaa aacgatagtg gctcaggctt
    34261 tcatttttca gcgttcccca gaag
//
LOCUS       DAJVUY010000025        34107 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.025, whole genome shotgun sequence.
ACCESSION   DAJVUY010000025 DAJVUY010000000
VERSION     DAJVUY010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34107
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.025"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ72_001095"
     CDS             complement(270..482)
                     /gene="rpmE"
                     /locus_tag="OQQ72_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCS2010901.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            685..2883
                     /gene="priA"
                     /locus_tag="OQQ72_001096"
     CDS             685..2883
                     /gene="priA"
                     /locus_tag="OQQ72_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HCS2010902.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ72_001097"
     CDS             3039..4064
                     /gene="cytR"
                     /locus_tag="OQQ72_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HCS2010903.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ72_001098"
     CDS             4156..5115
                     /gene="ftsN"
                     /locus_tag="OQQ72_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HCS2010904.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ72_001099"
     CDS             5208..5738
                     /gene="hslV"
                     /locus_tag="OQQ72_001099"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HCS2010905.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ72_001100"
     CDS             5748..7079
                     /gene="hslU"
                     /locus_tag="OQQ72_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HCS2010906.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL"
     gene            7146..8072
                     /gene="menA"
                     /locus_tag="OQQ72_001101"
     CDS             7146..8072
                     /gene="menA"
                     /locus_tag="OQQ72_001101"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HCS2010907.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDRPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ72_001102"
     CDS             8165..8650
                     /gene="rraA"
                     /locus_tag="OQQ72_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HCS2010908.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ72_001103"
     CDS             complement(8735..8980)
                     /gene="zapB"
                     /locus_tag="OQQ72_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HCS2010909.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ72_001104"
     CDS             9406..10251
                     /gene="glpF"
                     /locus_tag="OQQ72_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HCS2010910.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVKEKETTTPSE
                     QKASL"
     gene            10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ72_001105"
     CDS             10274..11782
                     /gene="glpK"
                     /locus_tag="OQQ72_001105"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HCS2010911.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEHDE"
     gene            11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ72_001106"
     CDS             11917..12927
                     /gene="glpX"
                     /locus_tag="OQQ72_001106"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS2010912.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ72_001107"
     CDS             13024..13770
                     /gene="fpr"
                     /locus_tag="OQQ72_001107"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCS2010913.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ72_001108"
     CDS             complement(13775..14203)
                     /gene="uspD"
                     /locus_tag="OQQ72_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HCS2010914.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14230..14529)
                     /locus_tag="OQQ72_001109"
     CDS             complement(14230..14529)
                     /locus_tag="OQQ72_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HCS2010915.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
     gene            complement(14741..15181)
                     /locus_tag="OQQ72_001110"
     CDS             complement(14741..15181)
                     /locus_tag="OQQ72_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS2010916.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN"
     gene            15282..15881
                     /locus_tag="OQQ72_001111"
     CDS             15282..15881
                     /locus_tag="OQQ72_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HCS2010917.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ72_001112"
     CDS             15989..16756
                     /gene="tpiA"
                     /locus_tag="OQQ72_001112"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HCS2010918.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ72_001113"
     CDS             complement(16811..17566)
                     /gene="cdh"
                     /locus_tag="OQQ72_001113"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HCS2010919.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ72_001114"
     CDS             complement(17673..18662)
                     /gene="sbp"
                     /locus_tag="OQQ72_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter
                     substrate-binding protein Sbp"
                     /protein_id="HCS2010920.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ72_001115"
     CDS             complement(18982..19944)
                     /gene="pfkA"
                     /locus_tag="OQQ72_001115"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014072359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCS2010921.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ72_001116"
     CDS             complement(20125..21027)
                     /gene="fieF"
                     /locus_tag="OQQ72_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HCS2010922.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ72_001117"
     CDS             complement(21175..21675)
                     /gene="cpxP"
                     /locus_tag="OQQ72_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HCS2010923.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSH
                     MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKM
                     ANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLSS
                     SNSRSQ"
     gene            21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ72_001118"
     CDS             21825..22523
                     /gene="cpxR"
                     /locus_tag="OQQ72_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HCS2010924.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ72_001119"
     CDS             22520..23893
                     /gene="cpxA"
                     /locus_tag="OQQ72_001119"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HCS2010925.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ72_001120"
     CDS             complement(23999..24673)
                     /gene="yiiM"
                     /locus_tag="OQQ72_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HCS2010926.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFS
                     RRLWGK"
     gene            complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ72_001121"
     CDS             complement(24822..25787)
                     /gene="kdgT"
                     /locus_tag="OQQ72_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HCS2010927.1"
                     /translation="MRKSRGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVSI
                     LAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAG
                     LSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASF
                     EPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGL
                     LGILLGVAVIIVTGVPLIIADKLIGGGDGTAGIAASSSAGAAVATPMLIAEMVPAFKP
                     MAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ72_001122"
     CDS             complement(26066..26686)
                     /gene="sodA"
                     /locus_tag="OQQ72_001122"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HCS2010928.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ72_001123"
     CDS             26970..28004
                     /gene="rhaT"
                     /locus_tag="OQQ72_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HCS2010929.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ72_001124"
     CDS             complement(28001..28867)
                     /gene="rhaR"
                     /locus_tag="OQQ72_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HCS2010930.1"
                     /translation="MAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDF
                     CELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKL
                     NLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQ
                     LVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ
                     FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
                     PSQWRHLNSQKD"
     gene            complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ72_001125"
     CDS             complement(28923..29759)
                     /gene="rhaS"
                     /locus_tag="OQQ72_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HCS2010931.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGF
                     LQ"
     gene            30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ72_001126"
     CDS             30047..31459
                     /gene="rhaB"
                     /locus_tag="OQQ72_001126"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HCS2010932.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHS
                     QNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVDLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINP
                     NDDRFINPEAMCSEIQAACRETAQPIPESDAELAQLRGEDFSQLHIVGGGCQNTLLNQ
                     LCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDS
                     EIAHYVAQLHSTRQTKELCA"
     gene            31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ72_001127"
     CDS             31456..32715
                     /gene="rhaA"
                     /locus_tag="OQQ72_001127"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HCS2010933.1"
                     /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD
                     VSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESD
                     TPVSRDQIKPEHFKNWGEWAKANQLGLDFNPSCFSHPLSADGFTLSHPDDSIRQFWID
                     HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISKKLNP
                     AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA
                     MLYVPQLLLHVSRPVRWDCDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINH
                     IAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYC
                     QRHDTPAGSEWLESVRAYEKEILSQRG"
     gene            32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ72_001128"
     CDS             32982..33806
                     /gene="rhaD"
                     /locus_tag="OQQ72_001128"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HCS2010934.1"
                     /translation="MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAP
                     YKDNVHAQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGY
                     HILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAV
                     FTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSG
                     STLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISREELIALGKRFGVTPLASALAL"
     gene            33816..>34107
                     /gene="rhaM"
                     /locus_tag="OQQ72_001129"
     CDS             33816..>34107
                     /gene="rhaM"
                     /locus_tag="OQQ72_001129"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HCS2010935.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         8364 a         8898 c         8848 g         7997 t
ORIGIN      
        1 gaacaggcca cgccggtggg agcaccaatg cgcaccccgg ctgaaccctg aacaatgcta
       61 ccgccatact gcgtcatgtc gccctgacgc gccgccggtt ttccgctcat cgtaaaatcc
      121 ttttgaaata aataagaacc agaagcctag cgccagtcaa caacaggaaa tgataatgag
      181 ttaacacccc ggaatttttc agaatttata aaaggcaaaa ttcaggcaca aaaaaagcgc
      241 cgtgcggcgc ttttttcgga aatccggtct tatttgctgc ccgggatgtt gaaacgcttg
      301 ttgaagcggt caacacggcc accggtagca acatcacgct gtttgccagt gaagaacggg
      361 tggcacttgc tgcacacgtc gaggttcagg tcatgaccaa cagtggagcg gattttcatt
      421 acgttaccgc aagagcagct agcagtaatt tcttcgtatt tcgggtgaat atcttttttc
      481 atgggaaaac ctcggtttaa ggccgcgtcg ctcttccagc cctaacgcca gacaccacgc
      541 gatgttaaaa gtatagcttc aatacgatca tttcgtacga aggcgcgaaa tcatacagaa
      601 attaaccagc gtatgcaaac tgatccgcac tcttctacgg caatgtgtat actaacccac
      661 cgaatttcaa gtcaggatga tgctatgccc gttgcccacg ttgccttgcc cgttccgctt
      721 cctcgtacct ttgactatct gctgccagaa ggcatgacgg ttaaagccgg gtgtcgcgtg
      781 cgcgtgccgt ttggcaaaca gcaggagcgc atcggggttg tggtgtcagt tagcgatgtc
      841 agtgagctgc cgcttaacga gctgaaagcg gtagtggaag tgctggacgt tgagccggta
      901 tttactcact ccgtctggcg gttactgctc tgggcggcag attactatca tcatccgatt
      961 ggcgatgtgc tgtttcatgc cttgccgatt ttactgcgcc aggggcggcc tgcggcgaac
     1021 gcgccgatgt ggtactggtt tgccactgaa caaggccagg cggtggatct gaacagcctg
     1081 aaacgctccc ccaagcaaca acaggcgctg gcggcgttac ggcaaggcaa aatctggcgc
     1141 gaccaggtcg ccacgctcga atttaatgat gccgcgttgc aggcgctacg caaaaaaggt
     1201 ctgtgtgatt tagcaagtga aacaccagag tttagcgact ggcgaacgaa ctatgccgtt
     1261 tctggtgagc ggttgcgatt gaataccgaa caggccaccg ccgttggcgc aattcatagc
     1321 gcggcagata ctttttctgc ctggctgctg gcgggcgtta ccggttccgg taaaacggag
     1381 gtttatctca gtgtactgga aaacgtgctc gctcagggca aacaggcgct ggtgatggtg
     1441 ccggaaatcg gcctgacacc gcaaactatc gcccgttttc gtgaacgttt taatgccccc
     1501 gtggaagttc tgcattccgg cctgaacgac agcgagcggc tttctgcgtg gttgaaagcg
     1561 aaaaatggcg aggcggcgat tgtgatcggc acccgctccg cgctgtttac gccgtttaaa
     1621 aatctcggcg tgattgtcat tgatgaagag cacgacagct cctacaagca gcaggaaggc
     1681 tggcgctatc atgcccgcga cctggcggtg tatcgtgcgc acagcgagca aatcccgatt
     1741 attcttggct ccgcaacgcc cgcgctggaa acgttatgca acgtccagca gaaaaaatac
     1801 cgcctgctgc gcctgacccg tcgggcaggg aatgctcgtc cggcaattca acatgtgctg
     1861 gatttaaaag gtcagaaggt gcaggcaggt ctggctccgg cgttaatcac ccgtatgcgc
     1921 cagcatttac aggccaacaa tcaggttatc ctctttctta atcgtcgggg ttttgcgcct
     1981 gcgctgctgt gccacgactg cggctggata gccgaatgcc cacgttgcga tcactactac
     2041 acgctgcatc aggcgcaaca gcatttgcgc tgtcaccact gtgacagtca gcgtccggtg
     2101 ccgcgccagt gcccttcctg cggttccacg cacctggtcc ccgtggggct gggcaccgaa
     2161 cagcttgaac agacgcttgc gccgatgttc cccggcgtgc ccatttcacg tatcgaccgc
     2221 gataccacca gccgcaaagg ggcactggaa cagcaactgg cggaagtgca tcgcggcggc
     2281 gcgaggattt tgatcggcac acaaatgctg gcgaaaggtc accactttcc ggatgtgacg
     2341 ctggtggcgt tactggatgt ggacggcgcg ctgttttctg ccgattttcg ctcggcagaa
     2401 cgtttcgccc agctttacac ccaggtcgcc ggtcgtgccg ggcgtgcggg taaacagggc
     2461 gaagtggtgc tgcaaacgca ccatccggaa catcctctgt tgcaaacgtt gctctataaa
     2521 ggctacgacg cctttgccga acaggcgctg gctgagcgac gcatgatgca gctgccgccg
     2581 tggaccagcc atgtgattgt gcgtgcggaa gatcataaca atcagcacgc gccgctgttc
     2641 ctgcaacaac tgcgtaatct gatcctttcc agcccgctgg cagacgacaa actgtggatt
     2701 ctcggcccgg ttccggctct ggcacctaag cgtggtggcc gctggcgctg gcagatcttg
     2761 ttgcagcacc cttcccgcgt gcgcttgcaa cacatcatta gtggtacgct ggcgcttatt
     2821 aatacaatac cggattcccg caaggtgaaa tgggtgttgg atgtcgatcc catcgaaggc
     2881 taatgcgcaa acgttgcgag gcggatcgaa aaattcaata ttcatcacac ttttcatgaa
     2941 aattctgtaa ccgttttcac gcgctatctg ctaaaaatgt tgccgatgtg aagtaaacat
     3001 ggatgtagta cgcctgacgt accaggcgag gagtgagtgt gaaagcgaag aagcaggaaa
     3061 ctgccgcgac catgaaagac gttgccctca aggcaaaagt ctctacagcg actgtctccc
     3121 gagcattaat gaatcccgat aaagtctccc aggccacccg taatcgggtt gaaaaagcgg
     3181 cccgggaagt gggttattta ccgcagccta tggggcgcaa cgtcaagcgt aatgaatccc
     3241 gcaccattct ggtgattgtc ccggatatct gcgatccctt ctttagcgaa attattcgcg
     3301 gtatcgaagt tacggcggca aatcacggat atctggtgct gattggcgac tgtgcgcatc
     3361 aaaatcagca ggaaaaaacc tttatcgatt tgatcatcac caagcaaatt gatggcatgt
     3421 tgctgctggg ttcaaggctg ccgtttgatg ccagcattga ggaacagcgt aatctgccgc
     3481 cgatggtgat ggcgaacgaa tttgcaccgg aactggagct gcctaccgtt catatcgaca
     3541 atctgaccgc cgcatttgat gcagtaaatt atttatatga gcaagggcat aaacggattg
     3601 gctgtatagc cggtcccgaa gagatgccac tgtgtcacta ccgcctgcaa ggctatgttc
     3661 aggcgctgcg tcgctgcgga attatggttg atccacaata catcgcccgt ggcgacttca
     3721 ccttcgaagc cggaagcaaa gcaatgcaac agctgcttga tcttccacaa ccgcctactg
     3781 cagtcttctg ccatagcgat gtgatggcgc tcggcgcact ttctcaggca aaacgccagg
     3841 ggctgaaagt cccggaagac ctttccataa tcggttttga taacatcgac ctgacgcaat
     3901 tttgtgatcc gccgctgaca accatcgcgc agccgcgtta cgaaatcggt cgggaagcta
     3961 tgctgttatt gcttgatcaa atgcaggggc aacacgttgg cagtggctct cgtttaatgg
     4021 actgcgaact tatcatccgg ggatcaacac gcgcgttacc ttaaagtaaa cctttaagac
     4081 tgccgtgact ggtcaaaggc ccgccgctta agtaacatgg cgggctgacg aacgaataaa
     4141 tacagcgaaa cgatagtggc acaacgagat tatgtacgcc gcagccaacc ggcaccttcg
     4201 cggcgaaaaa agagcacctc acggaaaaag caacgaaatc tgcctgcggt ttctcccgct
     4261 atggtcgcta ttgctgccgc cgttcttgtg acctttatcg gtggtctgta cttcattacg
     4321 catcacaaga aagaagagtc cgagacgctg caaagccaga aagtgaccgg aaacggacta
     4381 ccaccaaaac cagaagaacg ctggcgctac attaaagagc tggaaagtcg ccagccgggt
     4441 gtgcgtgcgc ccacagaacc ttctgccggt ggtgaagtga aaacgccgga gcaactgaca
     4501 ccagaacaac gtcagcttct tgaacaaatg caggctgata tgcgccagca gccaacgcag
     4561 ctggttgagg ttccgtggaa tgaacagacg ccggaacagc gtcagcaaac gctacaacgc
     4621 cagcgtcagg cgcagcaatt agcggagcag caacgcctgg ctcagcagtc gcgtacgact
     4681 gaacaaagct ggcagcagca gacgcgtacg tcgcaagccg cgccggtaca ggcgcaaccg
     4741 cgccagtcta aaccagcttc tactcagcag ccgtaccagg atctgctgca aacccctgcg
     4801 cacacgaccg cgcagtcgaa gccgcagcaa gctgcaccgg ttgctcgtgc cgctgacgcg
     4861 ccaaaaccga cggcggagaa aaaagacgaa cgccgctgga tggtgcagtg cggttcgttc
     4921 agaggcgcgg aacaggcaga gacggtacgt gctcagctgg cgttcgaagg atttgactcg
     4981 aaaatcacca ccaacaatgg ctggaatcgt gtggtcattg gcccggtgaa aggcaaagag
     5041 aacgcagaca gcaccctcaa tcggttgaag atggcgggtc atacaaactg cattcggctc
     5101 gccgccgggg gttgaaaccc tcaaaatccc ccccatctat aattgcatta tgcctcgtac
     5161 ttttgtacgg ggtttgtact ctgtattcgt aaccaagggg tcagctcgtg acaactatag
     5221 taagcgtacg ccgtaacggc catgtggtca tcgctggtga tggtcaggcc acgttgggca
     5281 ataccgtaat gaaaggcaac gtgaaaaagg tccgccgtct gtacaacgac aaagtcatcg
     5341 cgggctttgc gggcggtact gcggatgctt ttacgctgtt cgaactgttt gaacgtaaac
     5401 tggaaatgca tcagggccat ctggttaaag ccgccgttga gctggcaaaa gactggcgta
     5461 ccgatcgcat gctgcgcaaa cttgaagcac tgctggcagt cgcggatgaa actgcatcgc
     5521 ttatcatcac cggtaacggt gacgtggtgc agccagaaaa cgatcttatt gctatcggct
     5581 ccggcggccc ttacgcccag gctgcggcgc gcgcgctgtt agaaaacact gaacttagcg
     5641 cccgtgaaat tgctgaaaag gcgttggata ttgcaggcga catttgcatc tataccaacc
     5701 atttccacac catcgaagaa ttaagctaca aagcgtaagg atctcccatg tctgaaatga
     5761 ccccacgcga aatcgtcagc gaactggata agcacatcat cggccaggac aacgccaagc
     5821 gttctgtggc gattgctctg cgtaaccgct ggcgtcgcat gcagctcaac gaagagctgc
     5881 gccatgaagt gaccccgaaa aatatcctga tgatcggccc gaccggtgtc ggtaaaactg
     5941 aaatcgcccg tcgtctggct aagctggcga atgcgccgtt catcaaagtt gaagcgacca
     6001 aattcaccga agtgggctat gtcggtaagg aagtggattc tattattcgc gatctgaccg
     6061 atgccgccgt gaaaatggta cgcgtccagg ctatcgagaa aaaccgttat cgcgctgaag
     6121 aactggcaga agaacgtatt ctcgacgtgc tgatcccacc tgctaaaaac aactggggac
     6181 agaccgaaca gcagcaggaa ccgtccgctg ctcgtcaggc attccgcaaa aaactgcgtg
     6241 aaggccagct tgatgacaaa gaaatcgaga tcgatcttgc cgcagcaccg atgggcgttg
     6301 aaattatggc tcctccaggc atggaagaga tgaccagcca gctgcagtcc atgttccaga
     6361 acctgggcgg ccagaagcaa aaagcgcgta agctgaaaat caaagacgcc atgaagctgc
     6421 tgattgaaga agaagcggcg aaactggtga acccggaaga gctgaagcaa gacgctatcg
     6481 acgctgttga gcagcacggg atcgtgttta tcgacgaaat cgacaaaatc tgtaagcgcg
     6541 gcgagtcttc cggtccggat gtttctcgtg aaggcgttca gcgtgacctg ctgccgctgg
     6601 tagaaggttg caccgtttcc accaaacacg ggatggtcaa aactgaccac attctgttta
     6661 tcgcttctgg cgcgttccag attgcgaaac cgtctgacct aatcccggaa ctgcaaggtc
     6721 gtctgccaat ccgcgttgaa ctgcaggcac tgaccaccag cgacttcgag cgtattctga
     6781 ccgagccgaa tgcctctatc accgtgcagt acaaagcact gatggcgact gaaggcgtaa
     6841 atatcgagtt taccgactcc ggtattaaac gcatcgcgga agcggcatgg caggtgaacg
     6901 aatctaccga aaacatcggt gctcgtcgtt tacacactgt tctggagcgt ttaatggaag
     6961 agatttccta cgacgccagc gatttaagcg gtcaaaatat cactattgac gcagattatg
     7021 tgagcaaaca tctggatgcg ttggtggcag atgaagatct gagccgtttt atcctataat
     7081 cgcgttcaat cattttcatc attgtttgat ggggctgaaa ggccccattt ttattggcgc
     7141 gtattatgac tgaacaacaa attagccgaa ctcaggcgtg gctggaaagt ttacgaccta
     7201 aaaccctccc cctcgccttt gctgcaatta tcgtcgggac ggcgctggca tggtggcaag
     7261 gtcattttga tccgctggtc gccctgctgg cactgattac cgccgggcta ttacagatcc
     7321 tttctaacct cgccaatgat tacggcgatg cggtaaaagg cagcgataga cctgaccgca
     7381 ttgggccgct acgcggcatg caaaaagggg tcattaccca gcaagagatg aaacgggcgc
     7441 tcattattac cgtcgtgctc atctgtctct ccgggctggc actggttgca gtggcgtgcc
     7501 atacgctggc tgattttgtc ggtttcctga ttcttggcgg gttgtcgatc attgccgcta
     7561 tcacctacac cgtgggcaat cgtccttatg gttatatcgg tctgggggat atttccgtac
     7621 tggttttctt tggctggtta agcgtcatgg ggagctggta tttacaggct catacattga
     7681 ttccggcact gatccttccg gcgaccgcat gcggcctgct ggcaacggca gtactgaaca
     7741 ttaataacct gcgtgatatc aatagcgacc gagaaaacgg caaaaacacg ctggtggtgc
     7801 gcttaggtga agtgaacgcg cgtcgttatc atgcctgcct gctgatgggc tctctggtat
     7861 gtctggcgct gtttaatctc ttttcgctgc atagcctgtg gggctggctg ttcctgctgg
     7921 cggcaccgtt gctggtgaag caagcccgtt atgtgatgcg ggaaatggac ccggtggcga
     7981 tgcgaccgat gctggaacgc actgtcaagg gggcgttact gactaacctg ctgtttattt
     8041 tagggatatt cctaagccag tgggcagcat aactgacaaa tatcaattaa caattgatga
     8101 ttttgccaac agcccacata gcgcgatata ctgaaaattc tcgcagcaac tgaatgttaa
     8161 gcctatgaaa tacgatactt ccgagctttg tgacatctat caagaagatg ttaacgtcgt
     8221 ggaaccgctg ttctccaact ttggcggacg ggcgtcgttt ggcggacaaa taatcacggt
     8281 aaaatgtttc gaggacaacg ggttgctgta cgatctgctc gaacagaatg gccgtggtcg
     8341 tgttcttgtc gtcgatggcg gtggttctgt tcgtcgcgca ctggtcgatg ctgaactggc
     8401 gcgtctggca gtacaaaatg aatgggaagg tctggttatt tacggcgcgg tgcgtcaggt
     8461 agatgacctg gaagagttgg atatcggcat ccaggcgatg gcggcaattc cggttggtgc
     8521 cgctggcgaa ggcattggcg aaagcgatgt ccgcgtcaat tttggcggtg taaccttctt
     8581 ctccggcgac catctttatg ccgacaatac cgggattatt ctttcagaag atccgctgga
     8641 tattgaatga taagaaaggc accgcaaggt gccttttttc tgcgttacct gttggcctac
     8701 acagtaaaga aattacgcga aagatgaagc gtaatcagac ctcttccatg cgacccagca
     8761 gggcctgcag acgttcctgc cagccgttct gctgttcttt cagatggttg ttctcacgct
     8821 ccagctcttc gcgctgatgc tgggcatttt gaacttcctg cgacagtgag ttgttttttt
     8881 ctttcagctc ttcgatttcc atctgcaaca gagtgatggt atcaatcgcc tgctgtactt
     8941 ttgcttccag tttctcaaac acttctaatg acattgtcat acctctcctg aattgcaagg
     9001 cgttgatgga taaaaaatcc tcgtcccgat taccggtgac gccttaataa atacgagcgc
     9061 actttagtta gctccgattg tatgaagccg cgccatcgct gtccagcggc acgccttgca
     9121 gattacggtt tgccacactt ttcatccttc tcctggtgac ataatccaca tcaatcgaaa
     9181 atgttaataa atttgttgcg cgaatgatct aacaaacatg catcatgtac aatcagatgg
     9241 aataaatggc gcgataacgc tcattttatg acgaagcaca cacattttaa gttcgatatt
     9301 tctcgttttt gctcgttaac gataagttaa cagcatgcct acaagcatcg tggaggtccg
     9361 tgactttcac gcatacaaca aacattaact cttcaggatc cgattatgag tcaaacatca
     9421 accttgaaag gccagtgcat tgctgaattc ctcggtaccg ggttgttgat ttttttcggt
     9481 gtgggttgcg ttgcagcact aaaagtcgct ggtgcgtctt ttggtcagtg ggaaatcagt
     9541 gtcatttggg gactgggggt ggcaatggct atctacctga ccgcaggggt ttccggcgcg
     9601 catcttaatc ccgctgttac cattgcattg tggctgtttg cctgtttcga caagcgcaaa
     9661 gttattcctt ttatcgtttc acaagttgcc ggcgctttct gtgctgcggc tttagtttac
     9721 gggctttact acaatttatt tttcgacttc gagcagactc atcacattgt tcgcggcagc
     9781 gttgaaagtg ttgatctggc aggcactttc tctacttacc ctaatcctca tatcaatttt
     9841 gtgcaggctt tcgcagttga gatggtgatt accgctattc tgatggggct gatcctggcg
     9901 ttaacggacg atggcaacgg tgtaccacgc ggccctttgg ctcccttgct gattggtcta
     9961 ctgattgcgg tcattggcgc atctatgggc ccattgacgg gttttgccat gaacccagcg
    10021 cgtgacttcg gtccgaaagt ctttgcctgg ctggcgggct ggggcaatgt cgcctttacc
    10081 ggcggcagag acattcctta cttcctggtg ccgctttttg gccctatcgt tggcgcgatt
    10141 gtaggtgcat ttgcctaccg caaactgatt ggtcgccatt tgccttgcga tatctgtgtt
    10201 gtgaaagaaa aggaaaccac aactccttca gaacaaaaag cttcgctgta atatgactac
    10261 gggacaatta aacatgactg aaaaaaaata tatcgttgcg ctcgaccagg gcaccaccag
    10321 ctcccgcgcg gtcgtaatgg atcacgatgc caatatcatt agcgtgtcgc agcgcgaatt
    10381 tgagcaaatc tacccaaaac caggttgggt agaacacgac ccaatggaaa tctgggccac
    10441 ccaaagctcc acgctggtag aagtgctggc gaaagccgat atcagttccg atcaaattgc
    10501 agctatcggt attacgaacc agcgtgaaac cactattgtc tgggaaaaag aaaccggcaa
    10561 gcctatctat aacgccattg tctggcagtg ccgtcgtacc gcagaaatct gcgagcattt
    10621 aaaacgtgac ggtttagaag attatatccg cagcaatacc ggtctggtga ttgacccgta
    10681 cttttctggc accaaagtga agtggatcct cgaccatgtg gaaggctctc gcgagcgtgc
    10741 acgtcgtggt gaattgctgt ttggtacggt tgatacgtgg cttatctgga aaatgactca
    10801 gggccgtgtc catgtgaccg attacaccaa cgcctctcgt accatgttgt tcaacatcca
    10861 taccctggac tgggacgaca aaatgctgga agtgctggat attccgcgcg agatgctgcc
    10921 agaagtgcgt cgttcttccg aagtatacgg tcagactaac attggcggca aaggcggcac
    10981 gcgtattcca atctccggga tcgccggtga ccagcaggcc gcgctgtttg gtcagttgtg
    11041 cgtgaaagaa gggatggcga agaacaccta tggcactggc tgctttatgc tgatgaacac
    11101 tggcgagaaa gcggtgaaat cagaaaacgg cctgctgacc accatcgcct gcggcccgac
    11161 tggcgaagtg aactatgcgt tggaaggtgc ggtgtttatg gcaggcgcat ccattcagtg
    11221 gctgcgcgat gagatgaagt tgattaacga cgcctacgat tccgaatatt tcgccaccaa
    11281 agtgcaaaac accaatggtg tgtatgtggt tccggcattt accgggctgg gtgcgccgta
    11341 ctgggacccg tatgcgcgcg gggcgatttt cggtctaact cgtggggtga acgctaacca
    11401 cattatacgc gcgacgctgg agtctattgc ttatcagacg cgtgacgtgc tggaagcgat
    11461 gcaggccgac tctggtatcc gtctgcacgc cctgcgcgtg gatggtggcg cagtagcaaa
    11521 caatttcctg atgcagttcc agtccgatat tctcggcacc cgcgttgagc gcccggaagt
    11581 gcgcgaagtc accgcattgg gtgcggccta tctcgcaggc ctggcggttg gcttctggca
    11641 gaacctcgac gagctgcaag agaaagcggt gattgagcgc gagttccgtc caggcatcga
    11701 aaccactgag cgtaattacc gttacgcagg ctggaaaaaa gcggtcaaac gcgcgatggc
    11761 gtgggaagaa cacgacgagt aatgtaaatg ccggatgaag cgtttatgcc gcatccggta
    11821 gtcctgaaac gtgcgggggc aaccccgcac acatcaataa tcccaccctt cccctgtgct
    11881 acacttcgcg ccattcctta ctgcttagag tttgctatga gacgagaact tgccatcgaa
    11941 ttttcccgcg tcaccgaatc tgcggcgctg gctggctaca aatggttagg acgcggcgat
    12001 aaaaacaccg cggacggcgc ggcggtaaac gccatgcgta ttatgctcaa ccaggtcaac
    12061 attgacggca ccatcgtcat tggtgaaggt gaaatcgacg aagcaccgat gctctacatt
    12121 ggtgaaaaag tcggtactgg tcgcggcgac gcggtagata ttgctgttga tccgattgaa
    12181 ggcacgcgca tgacggcgat gggccaggct aacgcgctgg cggtgctggc agtaggcgat
    12241 aaaggctgct tcctcaatgc gccggatatg tatatggaga agctgattgt cgggccggga
    12301 gccaaaggca ccattgatct gaacctgccg ctggcggata acctgcgcaa tgtagcggcg
    12361 gcgctcggca aaccgttgag cgaactgacg gtaacgattc tagctaaacc acgccacgat
    12421 gccgttatcg ctgaaatgca gcaactcggc gtacgcgtat ttgctattcc ggatggcgac
    12481 gttgcggcct caattctcac ctgtatgcca gacagcgaag ttgacgtgct gtacggtatt
    12541 ggtggcgcgc cggaaggcgt agtttctgcg gcggtgatcc gcgcattaga tggcgacatg
    12601 aacggtcgtc tgctggcgcg tcatgacgtc aaaggcgaca acgaagagaa tcgtcgcatt
    12661 ggcgagcagg agctggcacg ctgcaaagcg atgggcatcg aagccggtaa agtattgcgc
    12721 ctgggcgata tggcgcgcag cgataacgtc atcttctctg ccaccggtat taccaaaggc
    12781 gatctgctgg aaggcattag ccgcaaaggc aatatcgcga ctaccgaaac gctgctgatc
    12841 cgcggcaagt cacgcaccat tcgccgcatt cagtccatcc actatctgga tcgcaaagac
    12901 ccggaaatgc aggtgcacat cctctgattg atttgatcga ttgagccttc cagtccttcg
    12961 ggactggaat ttttttgttc ggagaacgaa gataaggcaa gtcaatcaaa acaggagaaa
    13021 aacatggctg attgggtaac aggcaaagtc actaaagtgc agaactggac cgacgccctg
    13081 tttagtctca ccgttcacgc ccccgtgctt ccgtttaccg ccgggcaatt caccaagctt
    13141 ggccttgaaa tcgacggcga acgcgtccag cgcgcctact cctatgttaa ctcgcccgat
    13201 aatcccgatc tggagtttta cctggtcacc gtccccgatg gcaaattaag cccacgattg
    13261 gcggcactga aaccaggcga tgaagtgcag gtggttagcg aagcagctgg cttctttgtt
    13321 ctggatgaag taccagattg cgaaacgcta tggatgctgg caaccggtac agcgattggc
    13381 ccttatttat cgattctgca actaggcaaa gatttagatc gcttcaaaaa tctggtcctg
    13441 gttcacgccg cacgttatgc cgccgactta agctatttgc cactgatgca agaactggaa
    13501 aaacgctacg aaggcaaact gcgcattcag acggtggtca gtcgggaaac ggcagcgggg
    13561 tcgctcaccg gacggatacc ggcattaatt gaaagtgggg aactggaaag cgcgattggc
    13621 ctgccgatga ataaagaaac cagccatgtg atgctgtgcg gcaatccaca gatggtgcgc
    13681 gatacacaac agttgctgaa agagacccgg cagatgacga aacatttacg tcgccgaccg
    13741 ggccatatga cagcggagca ttactggtaa gcggttactt atcgataaac ggcacgatga
    13801 gcaaatccgc actcatctta ttgatcatcc cgcgatatgc tggcatcaaa cggttgataa
    13861 atgagtgatg atgaccacag acaaggaggt cgcactgctc tttttgcata atttccagca
    13921 gtgtttccgg catttctccg cgttcaatac gcagttttgt cttcggccat tgaatatttt
    13981 tcgtcagttt atacagcttg ttatccgact tattcttcaa caattgaaga atatcttctg
    14041 ttgcagggaa gtagataccc ggatacaact cgcttaagcc atcatcaata tgaattaacg
    14101 tcaggtgagc gtcattatgt ctggcgagct ccagagcttt attcaccagt aaggcatctt
    14161 cttcattccc ggaaattgcc acgccaatgt gtttataagc catgtttaac tccttctaaa
    14221 gcaactccat caagctaacg aacgcagtga taactcaaaa ataatcatct cggcctggca
    14281 tgagaaagtg aaggccgcat caagctcaac ttgcccctcc agatccttaa tcttgtaggc
    14341 cacgctggcc ccttcatctg cagaggatgc agcggcggca agctctttca gtttggtcat
    14401 aaaagactct gcttcttcgc gggtggcaaa aaagcgcgaa aacttactgg tacagttgtc
    14461 gttatcaatc accgtaccga tatcaatcgc acatccttta gtactgcatt tatctacgac
    14521 atctttcata gggcacctct gtatattcgc ctctctgtcg attacgactt aagaataatg
    14581 cgccgttaag ggaagaacaa acaagtaatg atcttatgga ttaccatttt ttttgatatt
    14641 gcttaaggtg aagagttcag aaggattttc cgggtattgt catttgcatc gtggaaataa
    14701 caatcccgga aaaaaatagc agtaagagat atattaaagg ttaattactt gatttattgt
    14761 cggctttata cttcacatcc tgagtatctt taccatattt attttcgcct tgtgtgccaa
    14821 caaacgcacc aagatcgata agcatcatca ccagaatcaa cgtcgggaca aaacacccca
    14881 ccgcccattg ccagacaccc ggtaaaatcg cccagttacc cgccagcagc atccacgcca
    14941 caatcatcag aaatgcccat gcgccggaac gcccgcgatc atgcaagcgc ttaacagtta
    15001 ctgccgctgt tggccaaagc aagcacacaa ggcaaaacgc cgcggtctga atatcgagta
    15061 aatttttacc cgccagtgag aaaagcacca gcatgcctgc gaaccacagg cctatccaaa
    15121 tccagaaatc acggcgtcca atacgccctt taaatgagaa taaccattgc tgtatggtca
    15181 tgtaagttcc ttgatggttg tcttttccag gattctaccc ttttgacaag ggcgacagat
    15241 atcgttttaa tcggagccag tcataacaaa aggtactgtc aatgaagcca gggtgtacgc
    15301 tgttttttct cttatgttct gcattaaccg ttacaacaac ggcgcatgca caaacaccag
    15361 atacggcaac gaccgcgcct tatctgctgg ctggagcccc tactttcgat ctctccatca
    15421 gccagtttcg agaagacttt aacagccaga atcctagcct gccactgaac gaatttcgtg
    15481 ccatcgacag cagtcccgac aaagccaatc tcactcgtgc tgcaagtaaa attaacgaga
    15541 acttgtatgc ttctacagcg ctggagcgcg gtaccttaaa aatcaaaagc attcaaatga
    15601 cctggctacc catccagggg ccagagcaaa aagcagcgaa agcgaaagct caggaataca
    15661 tggcagcagt gatccgcaca ctcaccccat taatgaccaa aacacaaagc cagaaaaaac
    15721 tgcagtcgct gctaacggcg gggaaaaaca aacgttatta caccgagaca gaaggtgcac
    15781 tgcgttatgt tgtcgcggac aacggcgaaa aggggctgac cttcgctgtt gaaccgatta
    15841 agctggcgct atctgaatcg cttgaaggtt tgaataaatg acaaaaagca aagcctttgt
    15901 gccgatgaat ctctatactg tttcacagac ctgctgccct gcggggcggc catcttcctt
    15961 tattcgctta taagcgtgga gaattaaaat gcgacatcct ttagtgatgg gtaactggaa
    16021 actgaacggc agccgccaca tggttcacga gctggtttct aacctgcgta aagagctggc
    16081 aggtgttgct ggctgtgcgg ttgcaatcgc accaccggaa atgtacatcg atatggcgaa
    16141 gcgcgaagct gaaggcagcc acatcatgct gggtgcgcaa aacgtggacc tgaacctgtc
    16201 cggcgcattc accggtgaaa cctctgctgc tatgctgaaa gacatcggcg cacagtacat
    16261 catcatcggc cactctgaac gtcgtactta ccacaaagag tctgacgaac tgatcgcgaa
    16321 aaaattcgcg gtgctgaaag agcagggtct gactccggtt ctgtgcatcg gtgaaaccga
    16381 agctgaaaac gaagcgggca aaactgaaga agtttgcgca cgtcagatcg acgcggtact
    16441 gaaaactcag ggtgctgcgg cattcgaagg tgcggttatc gcttacgaac ctgtatgggc
    16501 aatcggtact ggcaaatctg caactccggc tcaggcacag gctgttcaca aattcatccg
    16561 tgaccacatc gctaaagttg acgctaacat cgctgaacaa gtgatcattc agtacggcgg
    16621 ctctgtaaac gcgtctaacg ctgcagaact gtttgctcag ccagacatcg acggcgcgct
    16681 ggttggcggt gcgtctctga aagctgacgc tttcgcagta atcgttaaag ctgcagaagc
    16741 ggctaaacag gcttaagtct gacaggtgcc ggatttcata tccggcactt actttcctta
    16801 actcttcgcc ttaacgcaaa atctcacact gatgatcctg aatttcctcg gctgaagcac
    16861 ggttaagcgt cagtagattt cgttgtgtcg ccagcaatac aaatgagtta tcactctgcc
    16921 gtaccatcgc cagcccgtag cttcccatat gttcccgcgc ctcaggtact tcttctgcca
    16981 gcatcataaa tgggctgcgt tgtaccagtt cgctttccgt tacccgacgc gccaggtatt
    17041 catgcccgcg caaaccacct ggcagtggca accagcggct gctgatgttc gccagattgt
    17101 tatccagttg ttcgcgcaca tcaggacgaa tacaagagat atgaatatga aaatggtttt
    17161 gcgtacgccc ggtgcgggag ttgatcgcca aagaaaccgc gcgatcggga accggctggc
    17221 cgtacttttt gctcataaaa tcacgcgcct gccaggccaa ccaaaagaag ttcggcgttg
    17281 aaggatcggt caacaaagga ctttcagtac cgttaatacg atacgttggc atcaacagat
    17341 attgcagtgg gccattaaga tcttttaaaa ccacgtatcc ggcattgggt ttgacttccg
    17401 cacatggcga aggattttga ttttgctgct gattgggcaa acattcctca aggacaatct
    17461 tacgtaatgt atccgactct tcaccggtta atttccagta accaataccg gcagccacaa
    17521 cggcgataac tatcatcacc aaaaaaagaa gacccgcttt tttcatcttt ttttccctgt
    17581 acctcaaaga gatgcaaggg taacgcaaaa tcgtgacaaa taaaaaaccc ggtcgcgaga
    17641 aaccaccggg tttgataatt atcctgggga aatcagcgtt tgctgatctg atcgaacgta
    17701 ccgccgttag caaaatgctc tttttgcgct ttcgtccagc cgccgaactc ttcatcaatg
    17761 gtgaataact tcagctttgg aaacgcattt tcgtactttt tcgctacttc agcgtcgcgc
    17821 ggacggtagt agtttttcgc ggcaatttcc tgaccttctg gcgagtagag atatttcagg
    17881 taggcttccg ccacctcttt ggtgcctttt ttctcgacca ctttatcgac caccgacacg
    17941 gttggctctg cgaggataga ctcactcggc gtgacgattt cgaatttatc tttccccagt
    18001 tcattcgctg ccagcagagc ttcgttttcc caggcgatca gtacatcgcc aatcccgcgc
    18061 tcgacaaagg tgttagtgga gccgcgcgcg ccagaatcca gaacttcgac gtttttatac
    18121 agtgcccgaa caaaatcctg tgcttttgcc tgatcgttgt tgttgtgatg cagcgcgtag
    18181 ccccaggcag ccaggtagtt ccagcgtgcg ccaccagagc ttttcggatt aggcgtgatc
    18241 accgaaacac ccggtttaat cagatcgttc cagtcatgga tctgcttcgg attgccctta
    18301 cgcaccagga aaacaatggt ggaagtgtac ggtgcggagt tatccggcag acgtttgatc
    18361 cactctttat caatccgccc gcgttccgca attgcgtcca cgtcataggc cagagccagc
    18421 gtgacaacat cagcttcaat accgttgatt accgacgtcg cttgtttacc tgaaccaccg
    18481 tgtgactgac gcatcaccac gttatcacca gtttgctgtt tccagtgggc gctgaatgcc
    18541 ttgttgtact gttcgtacaa ttcgcgcgtt ggatcatatg aaacgttaag aagctgaata
    18601 tcctttgcca taacgctggt tgccgccagc aaaaatgtta accctacgcc ccacttgttc
    18661 atcgcccgac tctcttatgt tgtgttgtga tgagcaaagc gtgccagaag gttaaccaaa
    18721 cattaaagaa taaaaaaaga ttggctataa cttgcgggta tatgttgagg gattaaaaag
    18781 gcggaagaaa tccgcctcat attgctgaca aagtgcgctt tgtccatgcc ggatgcggcg
    18841 cgaacgcctt atccggccta caaaagtttg caaattcaat aaattgcaga attcatgtag
    18901 gcctgataag cgaagcgcat caggcatttt tgcttctgtc atcggtttca ggctaaagga
    18961 atctgccttt ttccgaaatc attaatacag ttttttcgcg cagtccagcc agtcaccttt
    19021 gaacggacgc ttcatgtttt cgatagcgtc gatgatgtcg tggtgaacca gctgttcgtt
    19081 ctggatacct acacaacgac cgccgtaacc tgccagcagc agatcgatag cgtaagcgcc
    19141 catacgggaa gccagaatac ggtcgtaagg caccggagaa ccaccgcgct ggatgtggcc
    19201 cagcacagtt gcgcgggttt cacgacctgt ttctttctcg atgaaatgcg ccagttcgtc
    19261 aacatcacac atatgttcgg taatcgccac gatcgcgtgt tttttacctt tcgcgatacc
    19321 cgctttgatt tcgtttacca ggtcttcacg gctgaattca acttccggaa ccacaacgaa
    19381 ttcacagcca ccggcaatgg ccgcagccaa cgtcagatcg ccacaataac ggcccatcac
    19441 ttccaccacg gaaatacgct ggtgagaaga agaggtgtca cgcagacggt cgatcgcttc
    19501 tacaacggtg ctcagcgcag tgaagaaacc gatagtgtag tcagtgcctt tgatgtcgtt
    19561 gtcgatagtg cccggcagac cgatgcacgg gaagcccatt tcggtcagac gcattgcacc
    19621 catgtaggaa ccgtcaccgc cgataaccac cagcgcgtcg ataccacgtt ttttcaggtt
    19681 ttcgatagcc acggcgcgga tgttctcgtc gcggaattcc gggaaacgcg cagaaccgag
    19741 gaacgtaccg ccacggttga tcatgtcaga cacgctgtaa cggtctagct gtaccatacg
    19801 gtcttcatac agacccagat agccgtcata aatacccatt acttccagac cttctgtcag
    19861 cgcagaacga acaaccccgc gaattgcggc gttcatgcct ggcgcatcac cgccgcttgt
    19921 caacacaccg attttcttaa tcatgactac ctctgaactt tggaatgcaa aatgaaatct
    19981 gttgccggaa gtcttcttgc acatcgaagt gatccaacga atgtgcaaat agtataacaa
    20041 tcacttcctg ctgaattgat tcaggtcagg ccaaatggcg gtattttata cacaaaatgc
    20101 gggtctggct ctcttttata ctgattatga aagcatagac cgtttaccct ccctgggtac
    20161 gacggaacag gggtcctgat ggataattac atccgatccc ggaaaacgcc gtaaaatagc
    20221 ctgctctacc tgatccgcca ccatatgtgc ctgaaccaaa ggcagagagt cttccatttc
    20281 caaatgaatc tgaataaagc gggtcggccc tgactgccgc gtgcgaagat cgtgagcgcc
    20341 gctaacaccc ggccaggaag tcacgatatc aataatttct tgccgttcct catcaggcaa
    20401 tgcgcgatcc agtaatgact gtaccgcctc atatcccatg cgtaacgcgc tatataaaat
    20461 atagatgccg attcccaatg caaacagagc atcggcgcga tgccagccgt accaggacaa
    20521 ccccagcgcc agcagaattg cgccgttcat cataacatca gactggtaat gtagcatatc
    20581 agcccgcacc gcctggcttt gcgtccggcg caccacccaa cgctgaaacg agacaaggat
    20641 aatcgtacaa attagcgcca caattgtcac gataaccccg acgcctggat ctatcatcgg
    20701 tgttggagat atcagatgtt gaatacccgt caaaaacagg aatagtgccg aaccggagat
    20761 aaacatactt tgcgccagcg ccgcgaggga ctctgcttta ccgtgaccaa acgagtgatt
    20821 atcgtcggca ggttgcaggg aatatcgcac caccagtaaa ttcgtcaacg acgcgccgat
    20881 atccaccagc gaatccacca gcgcggcgag aatactcacc gacccggtat accaccatgc
    20941 aaaaatttta atcagcaata gcaacgaagc catcgccgtc gcagcaatcg ccgcccgact
    21001 gaccagccgt ccataagatt gattcataaa tactcccgct atcaactgac gctagtataa
    21061 cggaagcaaa tcatctgcaa tgcattaagc agcaggcaaa ttgaggataa aaaaaacccc
    21121 acatcatgtg ggggaagaca gggatggtgt ctatggcaag gaaaacaggg tttactactg
    21181 ggaacgtgag ttgctactac tcaatagctt caacgatgaa cttttttgcc attgcgtcac
    21241 gtcacgcaac tgctccattc gttgttgatg tttctcgttt aaaaccgctt gctgctccgg
    21301 cgttaacagg cgatacattt ggttgcggac ttttgccatc tcaacctgac gagcaatttg
    21361 ctcattcgcc attttttctg cctgtgcgcg cacagcgttt tcatcaaaat tttctgcggt
    21421 gacaaggcga tgcattgtct ccagttcgct aacattaaca ggaggctgtt cgtgccgggc
    21481 ctgttgcata agatctcgca tctgctgacg ctgatgttcg gttaaactta tgccgtcgaa
    21541 catatggctc tgcgtactgc gctgcgtaag ttcttcaccc ggatgccagt tatcgcctga
    21601 accgacttca gcagcgtggc ttaatgaact gactgccagc gttgaagcca tgacggcagc
    21661 ggtaactatg cgcatcattt gctcccaaaa tctttctgtc gcgattcaac gatagagagt
    21721 ttacgattca ggctgcaaac atgcgtcagg gggtgtaaaa caacgtaaag tcatggatta
    21781 gcgacgtctg atgacgtaat ttctgcctcg gaggtattta aacaatgaat aaaatcctgt
    21841 tagttgatga tgaccgagag ctgacttccc tattaaagga gctgctcgag atggaaggct
    21901 tcaacgtgat tgttgcccac gatggggaac aggcgcttga tcttctggac gacagcattg
    21961 atttactttt gcttgacgta atgatgccga agaaaaatgg tatcgacaca ttaaaagcac
    22021 ttcgccagac acaccagacg cctgtcatta tgttgacggc gcgcggcagt gaacttgatc
    22081 gcgttctcgg ccttgagctg ggcgcagatg actatctccc gaaaccgttt aatgatcgtg
    22141 agctggtggc acgtattcgc gcgatcctgc gccgttcgca ctggagcgag caacagcaaa
    22201 acaacgacaa cggttcaccg acactggaag ttgatgcctt agtgctgaat ccaggccgtc
    22261 aggaagccag cttcgacggg caaacgctgg agttaaccgg tactgagttt accctgctct
    22321 atttgctggc acagcatctg ggtcaggtgg tttcccgtga acatttaagc caggaagtgt
    22381 tgggcaaacg cctgacgcct ttcgaccgcg ctattgatat gcacatttcc aacctgcgtc
    22441 gtaaactgcc ggatcgtaaa gatggtcacc cgtggtttaa aaccttgcgt ggtcgcggct
    22501 atctgatggt ttctgcttca tgataggcag cttaaccgcg cgcatcttcg ccatcttctg
    22561 gctgacgctg gcgctggtgt tgatgttggt tttgatgtta cccaagctcg attcacgcca
    22621 gatgaccgag cttctggata gcgaacagcg tcaggggctg atgattgagc agcatgtcga
    22681 agcggagctg gcgaacgatc cgcccaacga tttaatgtgg tggcggcgtc tgttccgggc
    22741 gattgataag tgggcaccgc caggacagcg tttgttattg gtgaccaccg aaggccgcgt
    22801 gatcggcgct gaacgcagcg aaatgcagat cattcgtaac tttattggtc aggccgataa
    22861 cgccgatcat ccgcagaaga aaaagtatgg ccgcgtggaa ctggtcggtc cgttctccgt
    22921 gcgtgatggc gaagataatt accaacttta tctgattcgt ccggccagca gttctcaatc
    22981 cgatttcatt aacttactgt ttgaccgccc gctattactg ctgattgtca ccatgttggt
    23041 cagtacgccg ctgctgttgt ggttggcctg gagtctggca aaaccggcgc gtaagctgaa
    23101 aaacgctgcc gatgaagttg cccagggaaa cttacgccag cacccggaac tggaagcggg
    23161 gccacaggaa ttccttgccg caggtgccag ttttaaccag atggtcaccg cgctggagcg
    23221 catgatgacc tctcagcagc gtctgctttc tgatatctct cacgagctgc gcaccccgct
    23281 gacgcgtctg caactgggta cggcattact gcgccgtcgt agcggtgaaa gcaaggaact
    23341 ggagcgtatt gaaaccgaag cgcaacgtct ggacagcatg atcaacgatc tgttggtgat
    23401 gtcacgtaat cagcaaaaaa acgcgctggt tagcgaaacc atcaaagcca accagttgtg
    23461 gagtgaagtg ctggataacg cggcgttcga agccgagcaa atgggcaagt cgttgacagt
    23521 taacttcccg cctgggccgt ggccgctgta cggcaatccg aacgccctgg aaagtgcgct
    23581 ggaaaacatt gttcgtaatg ctctgcgtta ttcccatacg aagattgaag tgggctttgc
    23641 ggtagataaa gacggtatca ccattacggt ggacgacgat ggtcctggcg ttagcccgga
    23701 agatcgcgaa cagattttcc gtccgttcta tcggaccgat gaagcacgcg atcgtgaatc
    23761 tggcggtaca ggattggggc tggcgattgt tgaaaccgcc attcagcagc atcgtggctg
    23821 ggtgaaggca gaagacagcc cgctgggcgg tttacggctg gtgatttggt tgccgctgta
    23881 taagcggagt taaactccgc atttgtaggc aggataaggc gtttacgccg catccggcat
    23941 ttgagcagga tgcctgatgc gacgctgata gcgtcttatc aggcctacac tccgggggtt
    24001 attttcccca caaccggcgg gaaaaatctt cgatcttgcc gctcagtcgg cgcttttgca
    24061 tcgtccgcgt ccagcttttc gataacccgg cggcggagag taaacggtga tactgatcgt
    24121 catcaaacgg catatgccat gcgatggcgg cagcctcctg cacggtcaca tcgctgacac
    24181 gggaaaccaa ctccagcggc gcgtccgcag acactttccc tggcgctatc acgctataca
    24241 accaccccac cttacctgtg ttttgcatca actgcgctat atcgctgata tcaaaatggt
    24301 aattgagttt atagcaaggc gagcgcggct ggctgacctg aattaatgcc tctccccagc
    24361 ggaaaatatc gcccatataa acattacttt ccgtcaggcc gtcggttgag aggttttcac
    24421 caaacgcagg cgcaacaaac aactccgcct gttccggaaa ttcccgcgcc cagtagagat
    24481 aatgctcacg aggataatga cacagcgctc tgtctggccc accatgaacc tttttctccg
    24541 cctgctcgtc accttccagc cccagctccg tcagcatcaa ctcaccatca acctggattt
    24601 tggcaattgc gctgggtttg ccttcgggat aagcctgaat cttgcctgtg tatacatcaa
    24661 ccggatatcg catctgttcc ctctccacga gaaatttccc cattagacca tatttatttt
    24721 atgtcaggcg tgctgttttc gcggtaagta tccaggcagg aactcaatag caaaccggac
    24781 gaacgttagt tcatccggct gtggggatta aggaagcagg tttatttcac cgtacctaaa
    24841 atttcgattt tcgctgctct ggctttgact ttacgtgacc agatagaggt aagaattggc
    24901 accagaatcg aagtcacaat gaccgccgtc gctaccagcg aagttgctgc cggagccatc
    24961 ggtttaaacg caggcaccat ttctgcaatc agcataggtg tcgctaccgc ggcccctgcg
    25021 gaactggaag cggcaattcc ggcagtgcca tcgccaccgc caatcaattt atcggcgata
    25081 atcaacggaa caccggtcac gataattact gccacaccca acaggatccc cagcaaacca
    25141 gtctgggcaa tcacagtcaa atcaatggta ttgcccagcg cgaaggcaaa gaatggaatc
    25201 agcgtttgca ccgctttgct gaaaaattct cgtaattcag ggtcaaggtt ccccagggca
    25261 aagcccacca ggaacggtaa tactgcgccg acgaaaacat gcggttcaaa cgaggcaatc
    25321 cctgcagtgc ccagaataat catcgtcatg agcggcccgg actccaacga catcaacaca
    25381 aatgccccag cttcttcttt tgtgccgtac tgctgcatga tggaagcgta aagtccgcca
    25441 ttggtcatat ccatcgccgc caccagcgcc agcgttgaaa gtccggcaaa gaatccaact
    25501 tcaacaccat gttccggaat aatgcgcgag gcaattgccg caaccaccca cgcgacggca
    25561 atttttgtta ccaccagcgt accggattta cgcaataccg ttcccgtcgc gcttaatttt
    25621 attgacgccc ccatgcaaaa aaaccacacc gccagaatgg acaccgtacc ggtaatcatc
    25681 ccgttggtga atgatccaaa atatttcccc gcccccggcg agaaggtgtg gcacagtgcg
    25741 ccaaggaata gcgggacgag catcatcccc ccccgggatt ttctcaatcg agcgttttat
    25801 ctgcatttcc atcacctgtc ggcatatttt taagggctga tgcgtaattc ctcaatggag
    25861 catcagtgtt gatggaaacg aagatagaca ttcatttaat caataaaagt gatcaaaacc
    25921 acatcaattg aaacgctgtt ttatttttat cggatcattg tttttatttt gaaattgatc
    25981 acaaaaaaac caccgccgtt ggcgatggtt cattttttaa gctgatatgc ggcgtaaacg
    26041 cctcattgca gcaggcggca aatgattatt ttttcgccgc gaaacgtgcc gctgcttcat
    26101 cccagttcac cacgttccag aactctttga tgtagtccgg acggcggttc tggaatttca
    26161 ggtagtaagc atgttcccac acatccaggc ccagaatcgg gaagccggaa gcgccagaaa
    26221 tagcttcacc catcagcggg gaatcctggt tagcagtaga aaccaccgcc agtttatcgc
    26281 ctttcagcac cagccatgcc cagccggaac caaagcggga agctgccgct ttctcaaatt
    26341 ctgctttgaa gttatcaacg gagccgaagt cacgttcgat agccgctttc aggtcaccct
    26401 gtaaggtggt gccttttttc agacctttcc agaacaggct gtggttagcg tgaccgccag
    26461 cgttgttgcg cagtacggtt ttcttgtctg ctggcagctg gtccagtttg gtgatcagct
    26521 cttcaaccgg caggttggca aattctggca ggctttccag cgccgcgttg gcgttgttga
    26581 cgtaggtctg atggtgtttg gtgtggtgga tttccatggt ctgcttatcg aagtgcggtt
    26641 ccagggcatc gtaagcatac ggcagggatg gcagggtata gctcatattc atctccagta
    26701 ttgtcgggcg gccgattgtt aatgcgcgta agcagttggt tcattatagt taattaaatg
    26761 atattgaaaa tgattatcaa tgccgtactt ttcgtaaggg tatggttttg caggaaaatt
    26821 cccgagatgt gaagcaaatc acccacttaa tgccgtgatt gccagtaaat cgacaacggc
    26881 ggcaacaggc gaaaggttaa tcgacagcac gatttttaca ctcatctcgt cggagatgtg
    26941 acgcgacgaa aaatgatgag gataagaaga tgagtaacgc gattacgatg gggatatttt
    27001 ggcatttgat cggcgcggcc agtgcagcct gtttttacgc tccgttcaaa aaagtaaaaa
    27061 aatggtcatg ggaaaccatg tggtcagttg gtgggattgt ttcgtggatt attctgccgt
    27121 gggccatcag cgccctgtta ctgccgaatt tctgggcgta ttacagctcg tttagtctct
    27181 ctacgctgct gcctgttttt ctgttcggcg ctatgtgggg gatcggtaat atcaactacg
    27241 gcctgaccat gcgttatctc ggcatgtcga tgggaattgg catcgccatt ggcattacgt
    27301 tgattgtcgg tacgctgatg acgccaatta tcaacggcaa tttcgatgtt ctgcttaata
    27361 ccgaaggcgg acgcatgacg ttgctcggcg ttctggtggc gctgattggt gtagggattg
    27421 tgactcgcgc cgggcagttg aaagagcgca aaatgggcat taaagccgaa gagttcaacc
    27481 tgaaaaaagg gctggtgctg gcggtgatgt gcggcatttt ctctgccggt atgtcttttg
    27541 cgatgaacgc cgcaaaaccg atgcatgaag ccgctgccgc actgggcgtc gatccactgt
    27601 atgtcgctct gccaagctat gtcatcatca tgggcggcgg cgcgatcatc aacctcggtt
    27661 tctgcttcat tcgtctggca aaagtgaagg atttgtcgct aaaagccgac ttctcgctgg
    27721 caaaaccgct gatcattcac aatgtgttac tctcagcact gggcgggttg atgtggtatc
    27781 tgcaattctt tttctatgcc tggggccacg cccgcattcc ggcgcagtat gactacatca
    27841 gttggatgct gcatatgagt ttctatgtat tgtgcggcgg tatcgtcggg ctggtgctga
    27901 aagagtggaa caatgcaggt cgccgtccgg taacggtgtt gagcctcggt tgtgtggtga
    27961 ttattgtcgc cgccaacatc gtcggcatcg gcatggcgaa ttaatctttc tgcgaattga
    28021 gatgacgcca ctggctgggc gtcatcccgg tttcccgggt aaacaccacc gaaaaatagt
    28081 tactatcttc aaagccacat tcggtcgaaa tatcactgat taacaggcgg ctatgctgga
    28141 gaagatattg cgcatgacac actctgacct gccgcagata ttgattgatg gtcattccag
    28201 tctgctggcg aaattgctga cgcaaaacgc gctcactgca cgatgcctca tcacaaaatt
    28261 tatccagcgc aaagggactt ttcaggctag ccgccagccg ggtaatcagc ttatccagca
    28321 acgtttcgct ggatgttggc ggcaacgaat cactggtgta acgatggcga ttcagcaaca
    28381 tcaccaactg cccgaacagc aactcagcca tttcgttagc aaacgacaca tgctgactac
    28441 tttcatgctc aagctgaccg ataacctgcc gcgcctgcgc catccccacg ctacctaagc
    28501 gccagtgtgg ttgccctgcg ctggcgctaa atcccggaat cgctccctgc cagtcaagat
    28561 tcagcttcag ccgctccggg caataaataa tattctgcaa aaccagatcg ttaacggaag
    28621 cgtaggagtg tttatcgtca gcatgaatgt aaaagagatc gccacgggta atgcgataag
    28681 ggcgatcgtt gagtacatgc agaccattac cgcgccagac aatcaccagc tcacaaaaat
    28741 catgtgtatg ttcggcaaaa acatcttgcg gataacggtc agccacagcg actgcctgct
    28801 ggtcgctggc aaaaaaatca tctttgagaa gttttaactg atgcgccacc gtggctacct
    28861 cggccagaga acgaagttga ttattcgcaa tatggcgtac aaatacgttg agaagattcg
    28921 cgttattgca gaaagccatc ccgtccctgg cgaatatcac gcggtgacca gttaaactct
    28981 cggcgaaaaa gcgtcgaaaa gtggttactg tcgctgaatc cgcagcgata ggcgatgtca
    29041 gtaacgctgg cctcgctgtg acgtagcaga tgtcgggcct tcatcagtcg caggcggttc
    29101 aggtaacgct gaggcgtcag tcccgtttgc tgcttaagct gccgatgtag cgtacgcagt
    29161 gaaagagaaa attgatccgc cacggcatcc caattcacct catcggcaaa atggtcctcc
    29221 agccaggcca gaagcaagtt gagacgtgat gcgctgtttt ccaggttctc ctgcaaactg
    29281 cttttacgca gcaagagcag taattgcata aacaagatct cgcgactggc ggtcgagggt
    29341 aaatcatttt ccccttcctg ctgttccatc tgtgcaacca gctgtcgcac ctgctgcaat
    29401 acgctgtggt taacgcgcca gtgagacgga tactgcccat ccagttcttg tggcagcaac
    29461 tgattcagcc cggcgagaaa ctgaaatcga tccggcgagc gatacagcac attggtcaga
    29521 cacagattat cggtatgttc atacagatgc cgatcatgat cgcgtacgaa acagaccgtg
    29581 ccaccggtga tggtataggg ctgcccatta aacacatgaa tacccgtgcc atgttcgaca
    29641 atcacaattt catgaaaatc atgatgatgt tcaggaaaat ccgcctgcgg gagccggggt
    29701 tctatcgcca cggacgcgtt accagacgga aaaaaatcca cactatgtaa tacggtcata
    29761 ctggcctcct gatgtcgtca acacggcgaa atagtaatca cgaggtcagg ttcttacctt
    29821 aaattttcga cggaaaacca cgtaaaaaac gtcgattttt caagatacag cgtgaatttt
    29881 caggaaatgc ggtgagcatc acatcaccac aatgaagcaa attgtgaaca tcatcacgtt
    29941 catctttccc tggttgccaa tggcccattt tcctgtcagt aacgagaagg tcacgaattc
    30001 aggcgctttt tagactggtc gtaatgaaat tcagcaggat cacattatga cctttcgcaa
    30061 ttgtgtcgcc gtcgatctcg gcgcatccag tgggcgcgtg atgctggcgc gttacgagcg
    30121 tgaatgccgc agcctgacgc tgcgcgaaat ccatcgtttt aacaatggcc tgcatagcca
    30181 gaacggttat gtcacctgga atgtggatag cctggaaagt gccattcgcc ttggattaaa
    30241 caaggtgtgc gaggaaggga ttcgtatcga tagcattggg attgatacct ggggcgtgga
    30301 ctttgtgctg ctcgaccaac agggtcagcg tgtggacctg cccgttgctt atcgcgatag
    30361 ccgctccaat ggcctaatgg cgcaggcaca gcaacaactc ggcaaacgcg atatttatca
    30421 acgtagcggc atccagtttc tgcccttcaa tacgctttat caactgcgtg cgctgacgga
    30481 gcaacaacct gaacttattc cacacattgc tcacgctctg ctgatgccgg attacttcag
    30541 ctatcgcctg accggcaaga tgaactggga atataccaat gccaccacca cacaactggt
    30601 caatatcaat agcgacgact gggacgagtc gctactggcg tggagcgggg ccaacaaagc
    30661 ctggtttggt cgcccgacgc atccgggtaa tgtcattggg cactggattt gcccgcaggg
    30721 taatgagatt ccggtggtcg ccgttgccag ccatgatacc gccagcgcgg ttatcgcctc
    30781 gccgttaaac ggttcacgcg ctgcttatct ctcttctggc acctggtcat tgatgggctt
    30841 cgaaagccag acgccattta ccaatgacac ggcgctggca gccaacataa ccaatgaagg
    30901 cggggcggaa ggtcgctatc gggtgctgaa aaatattatg ggcttatggc tgcttcagcg
    30961 agtgcttcag gagcggcaaa tcaacgatct cccggcgctt atcgccgcga cacaggcact
    31021 tccggcctgc cgcttcatca tcaatcccaa tgacgatcgc tttattaatc ctgaggcgat
    31081 gtgcagcgaa attcaggctg cgtgtcggga aacggcgcaa ccgatcccgg aaagtgatgc
    31141 tgaactggcg cagctacgcg gtgaagattt ctcgcaactg catattgtcg gcggcggctg
    31201 ccagaacacg ctgctcaacc agctatgtgc cgatgcctgc ggtattcggg tgatcgccgg
    31261 gcctgttgaa gcctcgacgc tcggcaatat cggcatccag ttaatgacgc tggatgaact
    31321 caacaatgtg gatgatttcc gtcaggtcgt cagcaccacc gcgaatctga ccacctttac
    31381 ccctaatcct gacagtgaaa ttgcccacta tgtggcgcag cttcactcta cacgacagac
    31441 aaaggagctt tgcgcatgac cactcaactg gaacaggcct gggagctggc gaaacagcgt
    31501 ttcgcggcgg tggggattga tgtcgaggag gcgctgcgcc aacttgatcg tttacccgtt
    31561 tcaatgcact gctggcaggg cgatgatgtt tccggttttg aaaacccgga aggttcgctg
    31621 accgggggga ttcaggccac aggcaattat ccgggcaaag cgcgtaatgc cagtgagcta
    31681 cgtgccgatc tggaacaggc tatgcggctg attccggggc cgaaacggct taatttacat
    31741 gccatctatc tggaatcaga tacgccagtc tcgcgcgacc agatcaaacc agagcacttc
    31801 aaaaactggg gtgaatgggc gaaagccaat cagctcggtc tggattttaa cccctcctgc
    31861 ttttcgcatc cgctaagcgc cgatggcttt acgctctcgc atcccgacga cagcattcgc
    31921 cagttctgga ttgatcactg caaagccagc cgtcgcgttt cggcctattt tggcgagcaa
    31981 ctcggcacac catcggtgat gaacatctgg atcccggatg gtatgaaaga tatcaccgtt
    32041 gaccgtctcg ccccgcgtca gcgtctgctg gcagcactgg atgaggtgat cagcaagaag
    32101 ctaaaccctg cgcaccatat cgacgccgtt gagagcaaat tgtttggcat tggcgcagag
    32161 agctacacgg ttggctccaa tgagttttac atggggtatg ccaccagccg ccagactgcg
    32221 ctgtgcctag acgccgggca cttccacccg actgaagtga tttccgacaa gatttccgcc
    32281 gccatgctgt atgtgccgca gttgctgctg cacgtcagcc gtccggttcg ctgggactgc
    32341 gatcacgtag tgctgctgga tgatgaaacc caggcaattg ccagtgagat tgtgcgtcac
    32401 gatctgtttg accgggtgca tatcggcctt gacttcttcg atgcctctat caaccacatt
    32461 gccgcgtggg tcattggtac acgcaatatg aaaaaagccc tgctgcgtgc gttgctggaa
    32521 cctaccgctg agctgcgcaa gctggaagcg gcgggcgatt acactgcgcg tctggcactg
    32581 ctggaagagc agaaatcgtt gccgtggcag gcggtctggg aaatgtattg ccaacgtcac
    32641 gatacgccag caggtagcga atggctggag agcgtgcggg cttatgaaaa agaaattttg
    32701 agccagcgtg ggtaaacact gccggatgcg gcgcgagcgc cttatccggc ctacgggtcg
    32761 gcaacagttg taggcctgat aagacgcgac agcgtcgcat caggcattga ttgccggatg
    32821 cggcacgagt gccttatccg gcctacaggt cggcaatagt tgtaggcctg ataagacgcg
    32881 acagcgtcgc atcaggcatt gattgccgga tgcggcacga gcgccttatc cggcctacgg
    32941 gtcgtgcatc tgacaacacc gaatttacag gaacacagaa catgcaaaac attacccagt
    33001 cctggtttgt ccagggaatg atcaaagcca ccaccgatgc ctggctgaaa ggctgggacg
    33061 aacgcaacgg cggcaacctg acgctgcgcc tggatgacgc cgatatcgcg ccttataaag
    33121 acaacgtcca tgcacaaccg cgctatatcc cgctcagcca gcccatgcct ttactggcaa
    33181 atacaccgtt tattgtcacc ggctccggca aattcttccg taacgtccag ctcgatcctg
    33241 cagctaactt aggcgtcgta aaagtcgaca gcgatggcgc gggctaccat attctctggg
    33301 ggttaaccaa cgaagccgtc ccgacatccg aactcccggc gcactttctc tcccactgcg
    33361 agcgcattaa agccaccaac ggtaaagatc gggtgatcat gcactgccac gccaccaacc
    33421 tgatcgccct cacctatgta ctggaaaacg acaccgcggt ctttactcgc caactgtggg
    33481 aaggcagcac cgagtgtctg gtggtattcc cggatggcgt tggcattctg ccgtggatgg
    33541 tgcccggcac ggacgaaatc ggccaggcga ccgcacaaga gatgcaaaaa cattcgctgg
    33601 tgttgtggcc cttccacggc gtcttcggca gcgggtcgac gttggatgaa acattcggtt
    33661 taatcgacac cgcagaaaaa tcagcacaag tattagtgaa ggtttattcg atgggcggca
    33721 tgaaacagac catcagccgt gaagagttga tagcgctcgg caagcgcttc ggcgttacac
    33781 cactagccag tgcgctggcg ctgtaaggag caaacatgat ccgcaaagcc tttgtcatgc
    33841 aggttaaccc cgacgcccac gaagagtatc agcgtcggca taaccccatc tggccggaac
    33901 tggaagcagt gttgaaatct cacggtgcgc ataactacgc catttacctc gacaaagcgc
    33961 gtaatctgct gtttgccacg gtagagattg aatctgaaga acggtggaat gcggtagcca
    34021 gtactgatgt ttgccaacgt tggtggaaat atatgaccga tgttatgccc gctaacccgg
    34081 ataacagccc ggtgagtagc gagctgc
//
LOCUS       DAJVUY010000026        32958 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.026, whole genome shotgun sequence.
ACCESSION   DAJVUY010000026 DAJVUY010000000
VERSION     DAJVUY010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32958)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32958)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32958
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.026"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..257
                     /locus_tag="OQQ72_001130"
     CDS             <1..257
                     /locus_tag="OQQ72_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HCS2010936.1"
                     /translation="LDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVV
                     MTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            267..1641
                     /gene="gspE"
                     /locus_tag="OQQ72_001131"
                     /pseudo
     CDS             267..1641
                     /gene="gspE"
                     /locus_tag="OQQ72_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1631..2833
                     /gene="hofC"
                     /locus_tag="OQQ72_001132"
     CDS             1631..2833
                     /gene="hofC"
                     /locus_tag="OQQ72_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HCS2010937.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAKVIHQLATLLKAGLTLSEGLALLAGQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="OQQ72_001133"
     CDS             complement(2868..3911)
                     /gene="guaC"
                     /locus_tag="OQQ72_001133"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HCS2010938.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            complement(4067..4111)
                     /locus_tag="OQQ72_001134"
     CDS             complement(4067..4111)
                     /locus_tag="OQQ72_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010939.1"
                     /translation="MIIKTLKMSARKRN"
     gene            4136..4756
                     /gene="coaE"
                     /locus_tag="OQQ72_001135"
     CDS             4136..4756
                     /gene="coaE"
                     /locus_tag="OQQ72_001135"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCS2010940.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP"
     gene            4756..5499
                     /gene="zapD"
                     /locus_tag="OQQ72_001136"
     CDS             4756..5499
                     /gene="zapD"
                     /locus_tag="OQQ72_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HCS2010941.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5509..5706
                     /gene="yacG"
                     /locus_tag="OQQ72_001137"
     CDS             5509..5706
                     /gene="yacG"
                     /locus_tag="OQQ72_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HCS2010942.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="OQQ72_001138"
     CDS             complement(5813..6202)
                     /gene="mutT"
                     /locus_tag="OQQ72_001138"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HCS2010943.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6262..8967)
                     /gene="secA"
                     /locus_tag="OQQ72_001139"
     CDS             complement(6262..8967)
                     /gene="secA"
                     /locus_tag="OQQ72_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCS2010944.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9029..9541)
                     /gene="secM"
                     /locus_tag="OQQ72_001140"
     CDS             complement(9029..9541)
                     /gene="secM"
                     /locus_tag="OQQ72_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HCS2010945.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="OQQ72_001141"
     CDS             complement(9772..10689)
                     /gene="lpxC"
                     /locus_tag="OQQ72_001141"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HCS2010946.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLTFKAPSAVLA"
     gene            complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="OQQ72_001142"
     CDS             complement(10790..11941)
                     /gene="ftsZ"
                     /locus_tag="OQQ72_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS2010947.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="OQQ72_001143"
     CDS             complement(12002..13264)
                     /gene="ftsA"
                     /locus_tag="OQQ72_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HCS2010948.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="OQQ72_001144"
     CDS             complement(13261..14091)
                     /gene="ftsQ"
                     /locus_tag="OQQ72_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HCS2010949.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKETAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQLAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14093..15013)
                     /gene="ddlB"
                     /locus_tag="OQQ72_001145"
     CDS             complement(14093..15013)
                     /gene="ddlB"
                     /locus_tag="OQQ72_001145"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS2010950.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15006..16481)
                     /gene="murC"
                     /locus_tag="OQQ72_001146"
     CDS             complement(15006..16481)
                     /gene="murC"
                     /locus_tag="OQQ72_001146"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HCS2010951.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16535..17602)
                     /gene="murG"
                     /locus_tag="OQQ72_001147"
     CDS             complement(16535..17602)
                     /gene="murG"
                     /locus_tag="OQQ72_001147"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HCS2010952.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="OQQ72_001148"
     CDS             complement(17599..18843)
                     /gene="ftsW"
                     /locus_tag="OQQ72_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCS2010953.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18843..20159)
                     /gene="murD"
                     /locus_tag="OQQ72_001149"
     CDS             complement(18843..20159)
                     /gene="murD"
                     /locus_tag="OQQ72_001149"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCS2010954.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="OQQ72_001150"
     CDS             complement(20162..21244)
                     /gene="mraY"
                     /locus_tag="OQQ72_001150"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HCS2010955.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21238..22596)
                     /gene="murF"
                     /locus_tag="OQQ72_001151"
     CDS             complement(21238..22596)
                     /gene="murF"
                     /locus_tag="OQQ72_001151"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCS2010956.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22593..24080)
                     /gene="murE"
                     /locus_tag="OQQ72_001152"
     CDS             complement(22593..24080)
                     /gene="murE"
                     /locus_tag="OQQ72_001152"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCS2010957.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24067..25833)
                     /gene="ftsI"
                     /locus_tag="OQQ72_001153"
     CDS             complement(24067..25833)
                     /gene="ftsI"
                     /locus_tag="OQQ72_001153"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS2010958.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="OQQ72_001154"
     CDS             complement(25849..26214)
                     /gene="ftsL"
                     /locus_tag="OQQ72_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HCS2010959.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="OQQ72_001155"
     CDS             complement(26211..27152)
                     /gene="rsmH"
                     /locus_tag="OQQ72_001155"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HCS2010960.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="OQQ72_001156"
     CDS             complement(27154..27612)
                     /gene="mraZ"
                     /locus_tag="OQQ72_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCS2010961.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28214..29218)
                     /gene="cra"
                     /locus_tag="OQQ72_001157"
     CDS             complement(28214..29218)
                     /gene="cra"
                     /locus_tag="OQQ72_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HCS2010962.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANAPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHLMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29300..29386)
                     /locus_tag="OQQ72_001158"
     CDS             complement(29300..29386)
                     /locus_tag="OQQ72_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HCS2010963.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="OQQ72_001159"
     CDS             complement(29398..29889)
                     /gene="ilvN"
                     /locus_tag="OQQ72_001159"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS2010964.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="OQQ72_001160"
     CDS             complement(29892..31616)
                     /gene="ilvI"
                     /locus_tag="OQQ72_001160"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HCS2010965.1"
                     /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID
                     HVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ
                     VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD
                     LPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVVAKKPVVYVGGGAI
                     MAGCHQQLKETVEALNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVI
                     FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLEL
                     LSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT
                     SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS
                     IQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA
                     EAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM
                     WLSKTERT"
     gene            31735..31779
                     /locus_tag="OQQ72_001161"
     CDS             31735..31779
                     /locus_tag="OQQ72_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2010966.1"
                     /translation="MKRNDKILHYEGLN"
     gene            complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="OQQ72_001162"
     CDS             complement(31934..32878)
                     /gene="leuO"
                     /locus_tag="OQQ72_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HCS2010967.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
BASE COUNT         7914 a         9255 c         8017 g         7772 t
ORIGIN      
        1 gattagatac ctgcgacggt ggcagcaatg gcattccctc gcctaccacc acccgctatg
       61 tttcagccat gagtgtggca aaaggcgtgg tgtcgctgac cgggcaagaa agtctcaatg
      121 gactaagcgt cgtcatgacg ccaggttggg ataacgcaaa cggcgtcacc ggctgggcgc
      181 gcaactgcaa tattcaaagt gacagcgcat tgcagcaagc ctgcgaagat gtcttccgct
      241 ttgatgacgc caactaagga gcggcaatga atattccaca gctcaccgcc ctgtgtctgc
      301 gttatcaggg agtcttgctg gatgccagcg aagaggtggt tcatgttgcg gtagtcgatg
      361 caccttcgca tgagttgctg gacgcattgc atttcgctac caccaaacgt attgagatca
      421 cctgctggac gcgccaacaa atggaaggcc acgccagtcg cacacaacag acattgcccg
      481 tagctgttca ggagaagcat cagtcgaaag cagagttgct gactcgaacg ttacaatctg
      541 cgctggaaca acgtgcgtct gatattcata tcgaaccagc ggacaatgcc taccgcatcc
      601 gcttgcgtat cgacggcgta ttgcatcctt taccggatgt ttcaccggat gccggagtcg
      661 cattaaccgc cagattaaaa gtgctgggaa acctggatat tgcggaacat cgcctgccgc
      721 aggacgggca attcactgtc gaactggcag gaaacgccgt ctcatttcgt attgcgacct
      781 taccatgtcg gggtggtgaa aaggtggtat taaggttgtt acagcaggtg aaccaggcac
      841 tggatgttaa cacgctggga atgcagccgt tacaactggc ggactttgct catgccttgc
      901 aacaaccaca gggactggtg ctggtaactg gccctacagg cagcggcaaa acggtcacgc
      961 tttatagtgc cctgcaaaag ctgaataccg ctgacattaa tatttgtagc gtcgaagatc
     1021 cggttgagat ccccatagcc ggactaaacc agacgcaaat ccatccgcgt gccgggctca
     1081 cctttcaggg cgttttgcgt gcgttattgc gccaggatcc tgacgtcatc atgatccgat
     1141 ggcgaaacgg cagaaattgc cattaaagcc gcgcaaaccg gtcacctggt gttgtctacc
     1201 ctacacacta attccacctg cgaaacgctg gtacgtttac agcaaatggg agtcgcccgc
     1261 tggatgctct catcagcgct tacgctggta atagcccagc gtctggtacg taaattttgc
     1321 ccacattgtc gccagcagca aggggagccc atccatattc cagacaatgt atggccgtcg
     1381 ccgctgcccc actggcaggc acccggttgt gtacattgct accacggttt ttatggtcgt
     1441 accgccttgt ttgaagtcct gcccattaca ccagccatac gccagcttat ttccgctaat
     1501 accgacgttg aatcgctgga aacgcacgca cgacaggcgg gtatgcgtac gctttttgaa
     1561 aacggctgcc tagccgtgga gcaaggctta accacctttg aagagttaat ccgcgtactg
     1621 gggatgccgc atggcgagta agcaactctg gcgctggcat ggcataaccg gcgacggcaa
     1681 tgcgcaagat gggatgctat gggcagagag ccgtgctttg ctgctcatgg cactacagca
     1741 acagatggtt accccactta gcctgaagcg aatcgccatc aattctgcgc agtggcgagg
     1801 agataaaagc gcgaaagtca ttcatcaact ggcgacgcta ctcaaagccg ggttaacgct
     1861 ttctgaaggg ctggcactgc tggcgggaca gcatcccagt aagcaatggc aagcgttgct
     1921 gcaatcgctg gcgcacgatc tcgaacaggg cattgctttt tccaatgcct tattaccctg
     1981 gtcagaggta tttccgccac tctatcaggc gatgatccgc acgggtgaac tgaccggtaa
     2041 gctggatgaa tgctgctttg aactggcgcg tcagcaaaaa gcccagcgtc agttgaccga
     2101 caaagtgaaa tcagcgttac gttatcccat catcatttta gcgatggcaa tcatggtggt
     2161 tgtggcaatg ctgcattttg ttctgccgga gtttgccgct atctataaga ccttcaacac
     2221 cccactaccg gcactaacgc aggggatcat gacgctggca gactttagtg gcgaatggag
     2281 ctggctgctg gtgttgttcg gctttctgct ggcgatagcc aataagttgc tgatgcgccg
     2341 accgacctgg cttatagtgc ggcagaaatt gctgttacgc atcccgatta tgggttcact
     2401 gatgcgggga caaaaactca cgcagatctt tacgattctg gcgctgacac aaagtgcagg
     2461 cattactttt ttgcagggcg tagagagcgt cagagaaaca atgcgctgcc cgtactgggt
     2521 gcaacttctg acacaaatcc agcacgatat cagtaacggt catcccatct ggctggcgct
     2581 aaaaaatacc ggggagttta gcccgctctg tttgcaatta gtgagaacag gagaggcatc
     2641 cggctcgctg gacctcatgt tagacaacct cgcccatcat catcgggata acacaatggc
     2701 gctggcggat aacctcgcag ccttactgga accggcgttg ctgatcataa cgggaggaat
     2761 tatcggtacg ctggtggtgg cgatgtatct gccaattttc catttaggcg atgcgatgag
     2821 tgggatggga taacgctggc gtgttgctcc acaccagcgt tggaagatta caggttgttg
     2881 aagatgcggt tttcttgttc ctgcacacgg ataaatgtgg tgcgcttggt cagttctttc
     2941 aggcgtgaag ccccaacgta tgtacaagct gaacgcaggc cgcccaaaat atcacgcgcg
     3001 gtattttcaa ccgggcctcg cagcggcagc ttaacggttt taccttctgc tgcgcgatat
     3061 tccgcaacgc cgccaacgtg acgtttcatc gcagactcgg agctcatgcc gtagaacagc
     3121 ataaatttct cgccgttctc ctcaacgatg cgaccgccgc tctcttcgtg gcccgccagc
     3181 atgccgccaa gcatgacgaa atcggcaccg ccgccaaagg cttttgcgac atcgcccggc
     3241 gtggtgcagc caccgtcgct gacgatcatt ccgcccagac cgtgcgccgc atcggcacat
     3301 tcgattaccg cagaaagctg cggataaccg acgcctgttt tgacgcgagt tgtacaaaca
     3361 gaacctgggc caatgccaac tttaacgata tcagcaccgg agaggataag ctcctcacac
     3421 atttcaccag tcactacgtt gccagcacaa atggttttgg tcggccacgc ttcacgcgct
     3481 ttcgcaacga actgcacgaa gtgttcggaa taaccattcg ccacatcaat acaaacaaag
     3541 tttaatgccg ggttcaggtc gagaatctgt ttagtttttt cgaaatccgc atcagacgta
     3601 ccggtagaaa ccatcacatg tttcagcaca tcagcggaag aattgttgat aaacgcttgc
     3661 cactcttcga cagaatagtg tttatgcaca gcagtcaaaa tatcaaaaga agccagcgca
     3721 gaggccatag aaaatgtacc tacggtgtcc atatttgcgg cgataatcgg cacgccggac
     3781 cagctctgat ctgaatgttt gaaggtgaat tgacgttcca gttcaacatc ggaacggctt
     3841 ttaagagtgg agcgtttagg gcggatgaga acgtctttaa aacctaactt cagatcttct
     3901 tcaatacgca tgtgcggatt cctggggtta atggctataa gggtaagagc gcaactccag
     3961 tgacgctatc atacgcacta atcaatgcgg cgcaagactg cgaaattgtc tttttttacg
     4021 ctacaatccc ataaatttac ctggtaaata gtgagcgaac gtttcatcaa tttcgctttc
     4081 gtgcactcat ttttaacgtt ttgataatca tgatgaattc ccgggaatat aaattatgag
     4141 gtatatagtt gccttaacgg gaggcattgg cagtggcaag agtaccgttg ccaatgcgtt
     4201 tgctgatctc ggaattaacg tcattgatgc cgatattatt gcgcgtcagg tggttgaacc
     4261 aggtgcacct gcgctacatg ccattgctga tcactttggc gctaacatga ttgctgctga
     4321 tggaacattg cagcgccggg ccttgcgcga gcggatcttc gccaacccgg aagagaaaaa
     4381 ctggcttaac gccctgctgc atccgctgat tcagcaagag acgcaacacc agatccagca
     4441 agctacttcc ccctatgtac tgtgggttgt gccattgctg gtagaaaact cactgtataa
     4501 aaaagcgaat cgagtgctgg tggtggatgt cagcccagaa acgcaactta agcgcaccat
     4561 gcagcgcgat gatgtaactc gcgagcatgt cgaacaaatc cttgctgctc aggcaacgcg
     4621 cgaagcccgc cttgccgtgg cagatgacgt cattgataat aacggcgcac cggatgctat
     4681 cgcatcggat gttgcccgcc tgcacgcaca ctatttgcag cttgcgtcgc agtttgtctc
     4741 acaggaaaaa ccgtaatgca gacccaggtc ctttttgaac atccactaaa tgaaaaaatg
     4801 cgtacatggc tgcgcattga gtttttgatt cagcaactca ccgttaattt acccatcgtt
     4861 gaccacgctg gcgcgctgca tttcttccgt aatgtcagtg aattactgga tgttttcgag
     4921 cgcggcgaag tccgcactga gctgttgaaa gaacttgacc ggcagcaacg taaactccag
     4981 acctggattg gcgtgcctgg cgtggaccag agccgtattg aagcattaat tcagcagtta
     5041 aaagcggcgg ggagcgtatt aatttccgcg ccgcgtatcg ggcaatttct gcgtgaagat
     5101 cgtttgattg ctctggtgcg tcagcgactg agcatcccag gcggctgttg cagctttgat
     5161 ttacctacat tgcacatttg gctgcatcta ccccaggcgc agcgcgacag ccaggtagaa
     5221 acctggattg ccagcctgaa cccgctcacc caggcactta ccatggtgct ggatttaatt
     5281 cgccagtcgg cccccttccg taaacaaacc agcctgaatg gtttttatca ggataacggt
     5341 ggcgatgccg acttgctgcg cctgaatctg tcgctcgatt cacagcttta tccgcaaatt
     5401 tccggacata agagccgttt tgccattcgt tttatgccgc tggacagtga aaacggacag
     5461 gtaccggaac gtctagattt cgaactggcc tgttgctaag gagtgaaaat gtcagaaact
     5521 attacggtga attgcccaac ctgcgggaaa acggtggtat ggggtgaaat cagcccgttt
     5581 cggccatttt gctccaaacg ttgtcagctg atcgacctcg gagaatgggc tgctgaagaa
     5641 aaacgaatcc ccagcagtgg cgatctttcc gaaagcgatg actggagcga agagccaaag
     5701 cagtgacatt ggtctgatgc cgcacatagg cctgataaga cgcggacagc gtcgcatcag
     5761 gcatcttgtg caaatgtcgg atgcggcgtg aacgccttat ccgacctaca gactacagac
     5821 gcttaagctt cgcaattacc ggttcattgg ctggcggaaa atcatcggca ttaagaccga
     5881 ccagcgacat ccactcaccg ggttgccctt ctttacccca cggcacccct tcccaacttt
     5941 cgaccagcca gaaccacaga gttatatgcc tgtccgggaa ttcatatgcc agtttttcaa
     6001 atagcgaaaa atgttgtggg gtaatcccga cctcttcctg aagttcacgc accaccgcct
     6061 gttccggcgt ttcgcccatt tcaattttac cgccgggaaa ctccagttta ttcgccatgt
     6121 gcgcatctgc tgcgcgacgc gttataaaga tttcattgtt ctcgttgcga ataataccta
     6181 ccgcaatttg cagctttttc attgttttaa acctataaaa aaggcgcaga atcctgcgcc
     6241 ttttgcttca acagttagct tttattgcag gcggccatga cactgcttgt attttttacc
     6301 agaaccgcac gggcaaggat cgttacgtcc tactttgcgc tcaccggttt gcgccgccag
     6361 tgcagctgcg gctgcagagt cgtcatcctg atggctaagc tgctgcattt gcgctaaacg
     6421 ctcggcttcc atacgacgct gttgttccag ctcctcaacc tcttcaggca tacgtacctg
     6481 aactttgctc agcgtactga taacttcata tttcaacgac tccagcatcg ctgcaaacat
     6541 ggagaacgat tcacgtttgt attcctgctt cggatctttc tgtgcatagc cacgcaggtg
     6601 gataccctga cgcagatagt ccatcgctgc caggtgctct ttccacaggg agtcaagcgt
     6661 ttgcagcatg acgcctttct cgaagtgacg catcatctca gcaccaacca cttcttcttt
     6721 acgctgatac acttcgatgg actgcgccag aatgcgctca cgcagcgtct cttcatgcag
     6781 ttctggttct ttatccagcc actcggcaat tggtaaatcg aggtcgaaat cgttcttcag
     6841 acgttcctgc agccccggaa tatcccacat ttcttccagc gactgtggcg gaatgtaggc
     6901 atcaatggtg gctttgaaca catcttcacg aatgctgttg atggtttcgc tcacatcgct
     6961 gacatccagc agttcgttac gctgggagta aatggcgcga cgctgatcgt tagccacgtc
     7021 atcatattcc agcagttgct tacgaatgtc gaagttacga ctttcaactt tacgctgggc
     7081 gttggcaatc gctttagtca cccacgggtg ttcaatggct tcgcctggct tcatacccag
     7141 tttacgcatc atgccggata ctcggtcgga agcaaaaata cgcatcagcg catcttccat
     7201 cgacaggtag aaacgggaag aaccagcatc cccctgacga ccagaacgac cgcgcaactg
     7261 gttatcgata cgacgggatt cgtgacgctc ggtaccgatg atatgcaggc cacctgcttc
     7321 cagtaccgca tcgtgacgta cctgccagtc ggctttaatt ttttcaattt gctctgcggt
     7381 cggattttcc agcgcggcaa cttctgcctg ccagctacca ccgagcacaa tatctgtacc
     7441 acgacccgcc atattggtcg cgatagtcac cgcagccgga taaccagcct gagcaacaat
     7501 cgccgcttcg ttggcgtgga atttggcgtt caggacgttg tgcttaatac cggctttggt
     7561 cagttcgttt gacaccagct ccgatttttc gatggagata gtacccacca gcaccggctg
     7621 gcctttcgca gtacgttctt tgatatcttc aatgatcgcc tgaatttttt ccgcttcagt
     7681 catgtagacc aggtccggca gatctttacg aatcattgga cggttggtcg gaacaacgac
     7741 ggtatccagc ttgtagatgg agctaaattc gaaagcttcg gtatcagcag taccggtcat
     7801 ccccgccagt ttttcataca gacggaagta gttctggaag gtgatcgaag ccagcgtttg
     7861 gttttcgttc tggatctgca caccttcttt cgcttccaca gcctggtgca gaccatcgga
     7921 ccagcgacgg ccctgcatgg tacgaccggt gtgttcgtca acgatgataa cttcaccatc
     7981 tttaacgatg tagtcgacgt cgcgggtaaa cagcgcatga gcgcgcagcg ccgccgttac
     8041 gtggtgcatc agcatgatgt tggccggaga gtacagagac tccccttcat ccatgatgcc
     8101 ctctttcacc agcagttctt caatcagcac cagaccacgt tcggtcaggt tcacctggcg
     8161 agatttttcg tccaccgaga agtggccttc gccctggaag gtttcggagt cttctttttc
     8221 ctgacggatc aggtgcggaa taattttatt cacgcgttta tacatttccg agctgtcttc
     8281 tgccgggccg gaaatgatca gcggtgtacg cgcttcatcg atcaggatgg agtccacttc
     8341 gtccaccagc gcatagtgca gtttacgctg tacacgttct tcagggctga acgccatatt
     8401 gtcgcgcagg tagtcaaagc cgtattcgtt gttcgtaccg taagtgatgt cagctgcgta
     8461 agcttcgcgc tttgccggtg ctggcatgcc cggcaggttg ataccgacag tcaggccaag
     8521 gaattcaaac agcggacggt tgttttcggc gtcacgttgc gccaggtagt cgttgacggt
     8581 aactacgtgc acgcctttac cggttagtgc gttcaggtaa gcaggcagcg ttgcggtcag
     8641 ggttttacct tcaccggtac gcatttcggc gatgcagcgt tcgttaagaa ccataccgcc
     8701 gagtaactga acgtcgaagt gacgcatacc aaagacgcgc ttacttgcct cacgtaccac
     8761 ggcgaaagct tccgggatca gattttccag cacttcgcct ttttccagac gtgcacgaaa
     8821 ctctgcggtt ttccctttca gttcttcgtc ggagagtttt tccatctccg gttccatggc
     8881 attgatgatg ttgaccactt tgcgcatccg gcgcagggtg cgatcgttac gactaccgaa
     8941 aactttagtt aacaatttga ttagcataat aaaatctcaa acgccccgcg ttgcggagtt
     9001 aataaaatga agtaaaggtt tattgttgtt aggtgaggcg ttgagggcca gcacggatgc
     9061 cttgcgcctg gcttatccag acgggcgtgc tgaattttgc ttgtggggta aaatgcgcat
     9121 aatcaatgcg ataacccttt tcagacggcg tgccttcctg ggtcagcagc gcgctgagcg
     9181 tatccagtaa tgcaagatgt tgcgcctgaa gaggcaaaga ttcttcagca acgggcagtg
     9241 tttgcggtgc cattgcgaaa gaaagatgac ggattaccgt gcgaatggca tattgatgcc
     9301 agtaatcaac ggaatagttc gaattcgggc ggcgtgtgtt cgcttccagc aaggccaatt
     9361 gaccaaagtt aactttggct gaaggctcgt ggttgcgggt tgtcgctttt gcgggcacgt
     9421 ttggttcggc ggcgttgctg agcgcaggca aacctaaact cgccgcgacc atccctaata
     9481 agagatgcgg ccagaagtag cgtttaccaa actgtcgcca gcgcgtcagt attccactca
     9541 cgttattgcc atcccgatcg aattcaaacg tatttagcgc acaaatctta tcattaaagc
     9601 ctgaagtcca cagcatgaat gaagataagt tgtgcgtaaa agtgcttaag aaaacagcgt
     9661 tcgcaccgtt ttttatagct cttataaaat tcaaaaaaaa acgactggtt cacctggccg
     9721 gagagagtgc cagatttgcc agtcgaattt tatacgacag tataaatgtc gttatgccag
     9781 tacagctgaa ggcgctttga aggtcaacgg cagttctgcg tcgtcctgga aggtcacata
     9841 ttcccaagct tcctgtttcg ccaggacagc ctgcagcagt ttgttattca gtgcatgacc
     9901 ggatttataa gcgataaatg caccaataat attgtgacca cacatgaaca agtcaccgat
     9961 cgcatcgagc attttgtgac gcacaaattc gtcttcaaaa cgcaggccgt cttcgttcag
    10021 tacgcgataa tcgtcaacaa cgatggcaca atcgaagctg ccgcccaggc acaaaccacg
    10081 ggactgcaga tattcgatat cacgcatgaa accgaacgta cgcgcacggc tgatctggcg
    10141 cataaacgca tcagcggaga agttcatcgc atagcgctgg ttgctggaat caatagccgg
    10201 atggttaaaa tcgatggtga aatccagcga aaaaccattg tacggcttaa attcagccca
    10261 cttatcgcca tcttcgacac gaacagtctc tttgatgcga acaaattttt tggcgcagtt
    10321 caactcgtcg ataccggcgt caagcagcag gtatacaaac ggagcggcgc tgccgtccat
    10381 gatcgggatt tccggcgcgt taacttcgat aacaatgtta tcgatgccca ggcccgcgag
    10441 agcagcattg aggtgctcta cggttgaaat ccgtacatca tgctcgttga ccagacacgt
    10501 acagagcatg gtatcacgca cagatttggc atcggccggg aaatctaccg gtggattcaa
    10561 gtcggtgcga cgatagatga ccccggtgtt ggccggcgca gggcgtaacg tcagagtgac
    10621 tttcttgccg gtatgtaaac cgacacccgt cgcctgaacg atacgtttaa gtgtcctttg
    10681 tttgatcatc gtattatctc gccaaattac ctatccaacc gaagtgtact atacattcgg
    10741 cgggccagtt tagcacaaag agcctcgaaa ccaaaattcc agtcaattct taatcagctt
    10801 gcttacgcag gaatgctggg atatccagat aatccggctc tttcgcagtt tgcggcgcat
    10861 tgtcattcac gactttagca accggcttct gctcctgggt cagcggagcc atcccatgct
    10921 gctggtagcg atccatcact ggctgctgaa cctgcttatt ggtcaccaga gtgatttcag
    10981 gacgtttgtc catgccgata cctgtcgcaa caacggttac gcgcagctcg tcattcatat
    11041 ccgggtcaag agaagtaccg ataaccacag tcgcgttgtc ggaagcaaat gcacggatgg
    11101 tgttacctac cgtttcgaac tcatccagac gcaggtcgaa gcccgccgtg atgttaacca
    11161 gcacgccgcg cgcgccagac aggtcgatat cttccagcag cggagaagag atagccattt
    11221 cagcagcttc ttccgcacgg tcttcaccgc tcgccacgcc agaacccatc attgcgtagc
    11281 ccatctcaga cattacggtg cgtacgtctg caaagtccac gttcatcaaa cccggacgag
    11341 taatcagttc agcgatacct tgcacagcgc ctttcagtac atcgttcgct gcgccaaacg
    11401 catccagcag ggagataccg cggcccagaa ctttcagcag tttgtcgttc gggatagtga
    11461 tcagagagtc cacatgcttg gacagttcag tgatcccctg ctccgcgaat gccatacgct
    11521 tcttgccttc aaagttgaaa ggcttagtga cgacagcaac ggtcaggata cccaaatctt
    11581 ttgccacttc agcgacgact ggtgctgcac ctgtaccggt accaccaccc atacccgcag
    11641 caataaagac catgtctgca ccttccagcg ccgcacgcaa tgcatcgcga tcctcatcag
    11701 ccgcattgcg gccaacttct ggattagcgc cagcgcccag tcctttggtg ataccgctac
    11761 cgatttgaat cgtctgtcca accgctgttt tacgcagcgc ttgtgcatcg gtatttaccg
    11821 cgaagaattc aacaccttca atgcgctcgc gcaccatgtg ttcaacagca ttaccgccgc
    11881 cgccgccgac gccgatgact ttaatcaccg cgtcattggt aagttccatt ggttcaaaca
    11941 tagtttctct ccgatttgtg cctgtcgcct gaggccgtaa tcatcgtcgg cctcataaaa
    12001 attaaaactc ttttcgcagc caactattga gtcgcttgat ccacgagcca actgatgctg
    12061 taacacgttt ttctacttca gcttcaccgt taagatgtga ctctttccca tagtgaagca
    12121 atcccaccgc cgtcgaataa tacggctcct gagcataatc cgttaaaccg gtaatgttca
    12181 gcggcgcgcc gatacgcact tgcgtatgaa acacgcgctg agcacaggct gcaagacctt
    12241 cgatctgcgc tgcgccaccg gttaatacaa tgcctgccgc caggtgatgt ttaacccctt
    12301 gttggcgaag cttttcctgc aactgcaata tctcttcgtt gaccaggttg agcagctcgg
    12361 tatagcgcgg ctcgatcacc tctgccaggg tctgacgttg cagactccgt ggcggacgac
    12421 cgcctacgct cggcacttcc acgctctcat cttttccaac gatggaaccc agcgcacaac
    12481 cgtggcgaac tttaatcgct tcggcgtcgc ttggcggcgt gccaaaggcg taagcgatat
    12541 cactggtcac gacattgcca gcataaggaa ttaccttagt gtggcgcaat gccccaccgg
    12601 tataaacggc gatatccatt gtaccacctc cgatatcgac gacgcagaca cccagttcac
    12661 gttcatcttc cgtcaatacc gaataacttg atgccagtcc ggcaaatatc agttggtcaa
    12721 ctttcagccc acaacgttca accgctttga cgatgttttt cgccatatcg ttgtgacatg
    12781 tgatcaggtg cacttttgcc tgcatccgca cgcccgaaag tcctaccgga ttcttgatcc
    12841 cttcctgata gtcaatcgca tactcttgcg ggatcacatg cagcacacga tgttcatcgc
    12901 gcacacgcac cgatttcgcg gtatggacga cgttttccac atcttcttgc gtcacttctt
    12961 cttcagaaat aggcaccata ccaatttcat tctggcagct gatgtgctta ccagaaagcg
    13021 ccagatatac cgaagagatc tgacaatctg ccatcaattc tgcctggtca atggcgcgtt
    13081 gtacgcactt gaccacggat tcgaggtcgt tcaccccgcc tttatccata ccacgtgacg
    13141 ggcagctgcc cacgccaatg atattgacca taccgtcggg cagaacttcc cctactaaag
    13201 cggcaacctt cgcggtacca atctccagtc ctactaccag ttttctgtcc gtcgccttga
    13261 tcattgttgt tctgcctgtg cctgattttg ttgctgagta gattcctctg gcggcaaggg
    13321 cgcccagcct actgccgctc cagagtcata acgcaaatca acgtagctaa tccgtttgcc
    13381 atcggtttgc gccagctgct gtaaaaccgg ataaagttct acaaagcgag ccaaacgttt
    13441 catcgtatcg ccccggccaa gattgagctt aatatcgtta ttcagcgtca actgccagga
    13501 acgccgcgcg gtcatcgccg tttccttcag agtaaatctg tcctttgcca gcatctgccc
    13561 catttcgcga tagccctgca acacttcatt ggcgctgcct tccgggccat acagcattgg
    13621 aagcacctgc ttgctggtgc gatctggcgg cacgctgaag gtgtttcctt ccgcgtctac
    13681 catatgttga tcattccacc gcgcaatcgg cacatattca accagatgaa tcttcaattc
    13741 atcaggccac tgctttctga cgctcacctg cttaatccac ggcaggcgtt gttctatttg
    13801 cgtctggatg atgttgacat cctgggtcat aaaggtaccc ggctcaccca atgccaggat
    13861 cgactgccgg atatcgtcat tacgcgtgta atggcgttca ccggtcaaca ccagctttga
    13921 gagcggcagg cgttgcgcat cttccatcca gcccaacacg acccagccgc tcaccaacac
    13981 tgtcgttaaa acggtcagca ggaaaaggat ccccgccaga cgcgttccat tattgcggcg
    14041 agaagaaacc tcttcttcgc tgtttcgcgt gttcagagca gcctgcgaca tattagtccg
    14101 ccagttccag aattcgtact accaactgcg agaagctcat acctgcctga cgtgccgcca
    14161 tcggcaccag gctgtggctg gtcatacccg gtgaggtatt ggcttccagc agataaaact
    14221 gtccatcgct gtccagcata acgtcaatac gtccccatcc tttgcaacct aacgtcgtcc
    14281 atgctttcag cactaatgcc tgcaaattgg cctcttgtga cgcatccaga cctgcggggc
    14341 agaaatactg tgtctcatca gagagatact tcgcctcata atcatagaag gttccggacg
    14401 gttgaatacg tattgacggt aaaatttctt caccgagtat cgcaaccgtg aactccggcc
    14461 cacttagcca tttttcaatc aatacttctt catcgtgctg aaatgccaat cttaatgcat
    14521 cttgtagagc attttctgct actacttttg acattcccac actggaacct tcgcggctcg
    14581 gcttaacgat aaccggcaaa cccagagcag aaatttctgc taactgctta tcgctcaggc
    14641 ctttttcaaa ctctgcgcgg gttaacgcta cccacggcgc gaccggtaaa ccggcacctt
    14701 gccacagcag tttgctgcgt agtttatcca ttgaaagcgc agatgccatc actccgctgc
    14761 cggtataagg caagcccatc agctcgagca tgccctgcag cgtaccatct tcaccgccgc
    14821 gaccgtgtag cgcgataaac actttctgaa aacccatcga cttcagttgc gtcacgtcga
    14881 cttctttcgg gtcgacagga tacgcatcaa taccaccttc acgcagcccg gctaacaccg
    14941 ctgcgccaga attcagagaa acttcccgct cagcggaagt cccgcccaac aggaccgcga
    15001 ttttatcagt catgttgttc ttcctccgga gtttgcggct tcagtttgat ttcagctaaa
    15061 gaacgggcaa tttttccgat attaccagcc ccctgaacga gaatcaggtc gttaccggtt
    15121 aataccggtg ccagcatctc ggctacctgc gcagggtccg gcaccagaat gggatcaatt
    15181 ttcccacgtc cacgaattgt gcgacacagc gaacggctgt ccgctcccgg aattggcgct
    15241 tcgccagccg gatacacttc cagcatcaac agggtatcaa cctgcgtcag cacattggcg
    15301 aaatcatcat acaagtcgcg cgtacgggta aaacggtgcg gctgaaacag cattaccagg
    15361 tttttatccg gccagcctgc gcgcgccgct ttaatggtgg cgtcaacttc cgtcgggtgg
    15421 tggccgtagt catcgaccag cattgccgta ccgcttttac cattcactgg ctccagcggg
    15481 aattcaccga ggaaatcaaa acggcgacca gtccccagga agctctccag cgcacgcaaa
    15541 atagcctcgt cgtcaattcc ctcttccgta gcaaccgcaa ccgcagctgc ggcgttcagc
    15601 gcgttatgac ggcctggcgc attcagggtg acgcgcatcg gctctttgtc ctggcgcagc
    15661 agcgtaaagt gcccctgcgg gccaatctgc tgataatctt ctacacgcac gtcggcatct
    15721 tcgctgaagc cgtaagtcgt ggtctgacgt cccacacgcg gtaacaattc gcggatcacc
    15781 ggatcatcaa cacacatcac cgcacgaccg taaaacggca ggttgtgcag aaaattaata
    15841 aaagtctgtt ttaaattctc aaagtcgccc tggtaggtat ccatgtggtc ggcttcgata
    15901 ttggtgacaa tcgccaccat cggttgcaga tgcaggaacg atgcatcact ctcatctgct
    15961 tcggcaatca ggtaccgacc atgccccaaa cgcgcatgaa cccccgccgc ttttaccagc
    16021 ccgccgttaa cgaaggttgg gtcgagcccc gcttctgcgt agatgctgga aaccatcgcg
    16081 gtggttgtcg ttttgccgtg cgttcctgca atggcgatgc catgacgaaa acgcattaac
    16141 tcagccagca tttcggcacg acggatcacc ggaatacgcg cttcatgagc tgcgacaatt
    16201 tccgggttat cggcagaaat ggcgctggaa acaacgacca cgctggcatc acgtacgttt
    16261 tccgggcgat ggttgaaata aatcgtcgct cccagattca ttaactgctg cgtgaccgga
    16321 tttggcgcta aatcggaacc actgatctga taaccttcat tggccagaac ttcggcaata
    16381 ccgcccatac cggcaccacc gatgccgaca aaatgtatgt gccgaacgcg acgcatttcg
    16441 ggcacgatgg aacgcagttt tgccaattgt tgtgtattca ttctttacgc cattaacttc
    16501 ttaaattcat acgatgcaaa aggcatcgct acaattacgc ccgggcagcc cggctcactt
    16561 catttgccac tcgctcggtg gcatccggaa tggatgcagc gcgggcgcgt tctgccatgg
    16621 ttaataaggt ttctcgcgac cacccggcca gggtgttggc gacagcatcc acgctaagct
    16681 gtggctgctc gataattttg gctgcgcccg ctttttccag cggtagcgca ttccagtatt
    16741 gctggcggtc tttatgttga aacggcacaa acaacgccgg tagtcctgcc gcggcgattt
    16801 cactcaccgt taaagcaccg gagcggcaaa cgacgacatc cgcccacgca tacgccgccg
    16861 ccatatcatc aataaattcc gtcactttat gctgcggttg ccccgcttcg gcatacgcct
    16921 gttcaacgga ttgttgcgaa cctttaccgc tctgatgcca gatagtgact gaatcaccca
    16981 gtttcgcagc aacctgcggc attgtctggt taagaatgcg tgcgccctgg gaaccaccca
    17041 ctaccagcac acgaaccgga ccttcacgtc cagccaaacg ttgctgcggc aacggcagcg
    17101 ccagcacatc ggtacgcacc gggttaccca ccacttccgc attagggaaa gcgcctggaa
    17161 acgcctgcat cactttggtg gcaatcttcg ccagccattt attggttaag cccgcaatac
    17221 cgttttgttc atgaagtaca accggaatgc ctaacgacca cgcggccaga ccacctggac
    17281 ctgatacata gccgcccata ccgagtacca cgtcaggttt gtacgctttc ataatcgccc
    17341 gcgcctgacg ccaggcgttg aagatacgca gcggcgcagc tatcagtgct tttatacctt
    17401 ttccacgcag accagagata cgaatgaaat caatttcgat gccatgtttt ggcactaagt
    17461 ccgcttccat acggtcggca gtccccagcc agcgaacttg ccaaccctga gccattagat
    17521 ggtgcgcaac cgccagtccc gggaatacat gtccaccggt tccgcctgcc atcaccatta
    17581 atcgctttcc ttgaccactc atcgtgaacc tcgtacaaac gcctgcgctt tctccagacg
    17641 cgtttcataa tcaatacgca acagcatcat gatggctgtc gacataatca gtaagctcga
    17701 accaccgtaa ctgatcagcg gcaatgtcag acctttggtc ggtaacatcc ccgccgccgc
    17761 gcctacgtta accagcgcct ggaagctaaa ccagatgcca atagaacagg cgagaaaacc
    17821 ggaaaaacgg tggtcaattt ctaacgcttt gcggccaatc gacatcgcgc gaaaagcgac
    17881 gaagaatacc attaaaagtg ccagcaccac accgacatac cccagttctt cgccgataat
    17941 ggcgaaaata aagtcagtgt gcgcttccgg cagatactcc agtttttgta ccgagttacc
    18001 taaaccttgt ccccaaagtt cgccgcgacc aaacgccatc agcgattgcg ttaactgata
    18061 gccgctgcca aagggatctt cccacgggtt ccagaatgcg gtaacacggc ggatacggta
    18121 cggttcggcg agtatcagca acacaaccgc tgaaatgccc ataccgataa tggcaatgaa
    18181 ctgccacaat ttcgctcccg ccaggaacaa catcgccagc gtagtcacaa acaccaccac
    18241 caccgtacca aggtctggct gtgccagcag taacactgcc aacaccagaa tcacgcccat
    18301 cggtttcagg aagccgcgca ggttattacg tacttcgtcg cctttacgca ccagatagtt
    18361 ggcgatataa caaaacagcg acagttttgt cagctccgca ggctggatac gcagcaaacc
    18421 gagatcgatc caacgcgatg cccctttaac cgagctcccc actaccagca cgatcatcag
    18481 caggatgata gatccgagca gcatcgtggc actgtagcgt tgccagaact ccatcggcag
    18541 acgcagcgta atgatcgcca gaatgaatgc caggatcaga tagacgccat cacgcttcgc
    18601 gaagaagaac ggatcgttgg ttaagcgttg ccctatgggc attgacgccg aggtcaccat
    18661 gataaagcca atcgccgcaa ggccgaaggt cagccacagt aaggtgcgat cgtacatgat
    18721 caggctgtcg gtatcttttt cccgcgagcc catcacccag ccttttagcg ccgtggagat
    18781 ccagaccagg atactgaatc ctggcaggcg cggcattttc aggcgaggga gagataaacg
    18841 catcaaccta actccttcgc cagacgggca aactcattgc ctcgttgttc aaagttcttg
    18901 aactgatcaa ggctggcaca ggccggggag agcagaacca tatcgcccgg ctgaacacgc
    18961 ggagccagca agcgcatcgc ctgttccata gtttcggttt gttctgccac ttccgggcgt
    19021 agcgccgcca gctgcgcacc gtcacgacca aaacagtaca aacgcacgtt gtcgccattc
    19081 agatagcgcg ccagtggact gaagtccgcc gatttaccat cgccgcccag caacaaatgc
    19141 agcgtgccgt ctacctgcaa gccattcaac gccgcttccg tactgccgac gttagtggct
    19201 ttcgaatcgt taatccagcg tacgccattg tgctccagca ccacttcaaa gcgatgcggc
    19261 agaccggtga aggtggttaa cgctttcagg ctgctggcgc gcggcaaacc agctgcgtct
    19321 gccagtgcca gtgctgccag cgcattggtg tagttatgct gcccggaaag tttcatctct
    19381 ttcacgttca gcactttctc gcctttcact cgcagccagg tttctccctg ctgatgattc
    19441 aggtgatagt cacccatgtt gacgccaaag ctgacgcagc gttcatcagc accgcgaatc
    19501 ggcattgtta aggcatcatc agcattgacg acacaaactt tcgcattttc gtaaatacgc
    19561 aattttgccg cacggtattg ctgcaaacca aacggatagc ggtccatatg atcttcagtc
    19621 acgttcagaa tggtcgccgc caccgcctgt aagctggaag tggtttccag ctggaagctc
    19681 gacagttcca gcacgtacag ttcgcactca gcatcaagca gcatcaacgc tggcaggcca
    19741 atattgccac ccacaccaac gttaaccccc gccgctttcg ccatttcacc cactagcgtg
    19801 gtgaccgtgc ttttgccgtt agaaccggta atcgccacaa tcggtgcttg tgcttcgcgg
    19861 cagaatagct cgatatcgcc aacgatttcg attccggcat cagcggcagc gcttaaggat
    19921 ggatgcgcca gtgcaatacc gggactggcg acaatcagat ctgccgccat cagccattca
    19981 tcattcagac tgcccgtgtg gcgttctacg gcttcgggta atttatccag gccaggcggt
    20041 gtcatacgcg tatccataac gcgcggcgtc acaccgcgag cgaggaaaaa gtccacgcag
    20101 gaaagcccgg tgaggcccag gccgataatg acgacatttt taccctgata atcagccatg
    20161 attaacgtac cttcagcgtt gccagaccaa tcagaaccag catcagcgaa ataatccaga
    20221 aacgcacaat gacgcgcggt tccggccagc ctttcagttc atagtggtga tgaatcggtg
    20281 ccatgcggaa aatacgttgt ccgcgcagtt taaaggagcc gacctgcagg atgacagaaa
    20341 gcgtttctac cacgaacacg ccccccataa tcaccagcag gaattcctga cgtagcagta
    20401 cggcgataat gcctaacgca ccacctaacg ccagcgaacc tacatcgccc ataaagacct
    20461 gcgccggata ggtgttaaac cacaggaagc ccagtcctgc cccgactatc gcggtacaga
    20521 caataaccag ttccccggcg tgtcgcagat acggtatgtg taaatagctg gcaaagttca
    20581 tgttgccggt cgcccacgcc accagcgcaa aaccaccggc gacaaatacg gtcggcataa
    20641 ttgccaggcc gtcgagacca tcggtcaggt ttaccgcgtt gccagtaccc acaatgacga
    20701 agtaagccag cagaatgtag aacagcccca actgcggcat cacatcttta aagaatggga
    20761 ccaccagctg cgttgcgggc gtgtctttgc cggcaaggta cagggcgaag gcgacaccca
    20821 gcgcaatgac cgacatccag aaatacttcc aacgagcgat caaccctttg gtgtctttac
    20881 gcaccacttt gcgataatca tcaacaaagc caataacacc gtaacctacc agcaccacca
    20941 acacgcacca gacgtacgga ttggacgggt aagcccacag cagtacggag atcacaatcg
    21001 ccgtcaggat cataatcccg cccatggtcg gcgtaccgcg cttgctgaag tgtgattcag
    21061 gaccgtcgtt acgcaccacc tgaccaaagg aaagtttttg caaatgagca atcatacgcg
    21121 ggcccatcca caatgagatg aacagcgcgg tcagcaggct gacgatggcg cgaaacgtca
    21181 gataggaaaa gacgttaaag ccggaataat atttgaccaa atgttcggcc agccaaacta
    21241 acatgtccca ttctcctgta aagcgcgtac tacctcttcc atggcggcac tacgtgaacc
    21301 cttaactaaa atcgtaatta cctgttgctc agcaatcagt gatttaagac gcgtaattaa
    21361 cgcagtttta tcagcaaaat gttcgccaac gccgctggcg gtgctgatag catggctttg
    21421 tttacccacg cttaacacgc ggtcaatacc agcagctttt gccgcctcgc ccacctgtac
    21481 atggcaggct tcgctttcag cgcccagttc cgccatatcg cccaccacca gcacgcggta
    21541 gcccggcatt tcagccagta cctgaacagc ggcggtcatt gaaccgacat tggcgttgta
    21601 ggagtcgtcg agcagcaact ggttttctgc cagttggatg gggaacagac ggcctggaac
    21661 agctttcaga tttgccagcc ccgctttgat agcatcaagc gttgcgccca cggacatgga
    21721 gagcgcagcg gctgccagcg cattcgcaat attgtgacgc cccggcaacg gcagcagaac
    21781 atcgacgcta ccggttgggg tttgtagggt aaattccgta ccgtgcgagg tcacatggat
    21841 attggtggcg gtgaaatcgc tgttggcggc attgggtgag aaacgccaca ctttgcgtga
    21901 gccaattacg ctctgccagt tcagccagtc gttgttgtcg gcgttcataa tggcgatacc
    21961 gttttccggc aggccgctaa agatttcacc tttcgctttc gcgacacccg caagcgagcc
    22021 aaaaccttcc agatgcgccg ctgccaggtt gttgaccagc gcagcttccg ggcgagtcag
    22081 actcacagtc caggctattt cgccctgatg gttcgcgcca agttcaataa ctgcgtaatc
    22141 gtattccggc gttaagcgca acaacgtcat cggtacaccg atgtcgttgt tgagattgcc
    22201 tgccgtataa agcgtgttgc cgcactggct taaaatcgcc gccgtcatct ctttaacgga
    22261 ggttttgccg gaggaacctg tcagagcaac cacgcgcgcc ggaacttgct ggcgaaccca
    22321 tgcagccagt tcaccaaacg ccagacgcgt atccttgacg attaactgcg gcaggtcgat
    22381 atccagcgga cggctgacca gtagtgcgcc cgcgccgcca gctttcgcct ggtcggcaaa
    22441 atcgtgggca tcaaaacgtt cgcctttcag ggcaacaaac aggcagcccg gcgtcagttt
    22501 tcgggtatca gtggttacag catcaagggt gatatctgca ccttgcagtt caccgttgag
    22561 aatgtcggta agttggctaa gggttacgct aatcatgcaa tcacccccag cagacgcgcc
    22621 accgtgacgc gatcggagta gtccagacgc tgattgccaa caatctggta atcttcatgg
    22681 cctttgcccg cgaccagcac cacatcgttc tctttagcct gcataacggc gcaagtcacc
    22741 gcttcagcac ggccttccat cactttggca tgtccggcat ctaacattcc cgccagaata
    22801 tcgttgatga tggcacgcgg ttcttcggta cgcgggttat cgtccgtcac caccgccacg
    22861 tcagcaaact cttcggcaat tgcgcccatc agtggacgct tacctttatc gcgatcgcca
    22921 ccacagccaa agacacacca cagcttgccc gcacagtgca gacgcgccgc ctgtaaggct
    22981 ttttccagtg catccggcgt atgcgcgtaa tccaccacca ccgtcggttt gcctggcaca
    23041 gtgaacactt ccatacgtcc gcaaaccggt tgcagacgcg cggcggtttt caacagatca
    23101 gccaatggat agccgagtgc caacagtgtc gccagcgcga gcagcaggtt gctgacgtta
    23161 aaagcgccta tcagatggct ttcaatttcg ccatcgcccc aacttgagct aaagcgaatc
    23221 gtcacaccgc tgtcgtgata gttcacgtcg atcactttta accagcgtcc gtgacagttc
    23281 ggattaatat gatcttccat tgataccgca accgcgtccg gcagctttgc cagccaacgg
    23341 cggcccactt catcgtcggc gttaataatc gcctgaccgc aatgatgttc agaataaagc
    23401 agccatttcg cagcttcgta gtgttccata tcaccatgat aatcaaggtg atcgcggctt
    23461 aagttggtaa agaccgacgc cgcaaatttc aatgccgcca cacggtgctg taccagcccg
    23521 tgggaggaaa cttccattgc gcaaaacgtc gcgccctgct ccaccagccc cgccagctca
    23581 tgctgaacat cgactgccga accggtggta ttttctgtcg ggatcacttt ccccagcaga
    23641 ccgttaccaa cggtgcccat taccgcgctg gtttcgccaa gcagttggct ccactgcgcc
    23701 agcagctggg tagtcgtggt tttgccgttg gtgcccgtta cgcctacgag acgtaaattg
    23761 tcagagggtt catggtaaaa acggcccgcc agtgcagata aacgctcgtt gagctggctg
    23821 agatagatga ccggtacgcc gtgcatttca cggatttcac cgtcggtcgc ctcatctttc
    23881 gcctctgcaa taatggcagc cacaccttgc gctatcgcct gcgggatata tcgacgcccg
    23941 tccgcctgat gacctactac agctacaaag agatcgcccg ccgcagccac acggctgtcg
    24001 agtgtcatct ctcgcagtgc tcgcgaaggt gcgtctggca cccacggagc aagaaggtcg
    24061 cgcaaattac gatctgccac ctgtcccctc gccttgatta atcacaaatt catttttatc
    24121 gcccgttgtc agcgcatccg gctcgatgtt catggtacgc aatacgccgc ccatgatggc
    24181 accaaagacc ggcgcggaaa cggcgccgcc gtagtattta cccgcctgcg gatcgttgat
    24241 aacaacaacc agcgcgaagc gcggctgact cgcaggcgca acgcctgcgg tataagcaat
    24301 atatttattg atgtagcgac cgtccggccc gacctttttc gcggtaccgg ttttaatggc
    24361 gatacgatag cctttaatcg ccgccttcac gccgccgccg cccggtagcg ccacgctttc
    24421 catcatatgc accacggtgc ggacaatgga ttccgggaag acacgttcac cgggaaccgg
    24481 ggggtcaact ttggtaatcg acagtgggcg ataaatgccg tagctgccga tagttgcgta
    24541 gactcgcgct aactgtaacg gtgttaccat tagcccgtag ccgaaagaga aggtggccct
    24601 ctctatgtca gaccaccgtt gtttttgagg atataagcca ctgcgttctc cgaccaaccc
    24661 caaattggtc gcttttccca gtccaaaacg tgagtaagta tctactaacg ctgaggacgg
    24721 catcgctaac gccagcttgg aaacaccgac gttactcgac ttctgtaata ccccggtcag
    24781 ggttaattcg ctgtagcgtg ccacgtcttt gatttcgtgg ccgttaattc gataaggaat
    24841 ggtattgagt accgagtttt cccgcaccac gccacgttgc aacgcggtca tcaccaccat
    24901 cggtttaacc gttgagcccg gttcaaacac gtcggtgatg gtacggttac gcatcgcctc
    24961 tttcggcgtg ccgctcagat tgttagggtt gtatgacggg ctgttagcca tcgccagcac
    25021 ttcacctgtg ttgacatcca ccagcacggc gctaccagat tcagccttgt taaaggccac
    25081 cgcgttgttc agttcgcgat aaaccagcgc ctgcaggcgt tcatcaatac tcagcgccag
    25141 gttgtgcgct gcctggctgt cagtagaaga aatatcttca attacgcgac catagcggtc
    25201 tttacgcaca atgcgctcac ccggctgccc ggtaagccat ttatcgaaac tcttctcaac
    25261 gccctcaatc ccttgactat cgacgttagt aaagccaatg aggtgagcag tcacttcgcc
    25321 ggatggataa taacggcgag attcttcacg cagatgaata cccggcagtt tcagtttttt
    25381 gatgtagtcc gccatgtcag ggtttacctg acgcgccaga taaataaagc gccctttcgg
    25441 gttggcgtta atgcgggcag aaagctgatc cagcggaata ttgagcgcgt tagccagcgc
    25501 cttccagcgg tcaccgacgc tgataccgcc agcgtcatgc acttctttcg ggtcagccca
    25561 aatcgctttt accggcacgc tcaccgctaa cgggcgacca gaacggtcag taatcatgcc
    25621 gcgggaggtg gaaacttgct gaacgcgaag agaacgcatg tcgccctctt tcaccagcat
    25681 atccggggag ataacttgta accacgctac gcgtccgagc agaaaagcca gcgccaggag
    25741 aatacagccg cataacaacg caaaacgcca actaataaag ttggcatgtt cttcctgacg
    25801 ttttggtttc tgcgttttcg ccgctgcttt catgcgtcgc gtttatcctt atttttgcac
    25861 tacgatattt tcttgtgacg gatcaacatg ctgcatttgc agcttttccg tggcgatcct
    25921 ttccacccgg ctatggtcgc cgagcgcatt ctcttcaagg atcaggttgc gccattcaat
    25981 gtctaaagca tctcgctcca gcaccagttg ttcgcgctga gcggtcagta aacgggtatg
    26041 gtgcgccgtg gttaccacgg tcaccgccgt caaaataatg caaatgaaca ggcagagtgg
    26101 cagcttccca aatcgcaaaa gatcgtcacc gataacacca ggcaatgcat ggcgctcgtg
    26161 gcttcccatc gatcctttaa ctttgcttag agcttctgtc actctgctga tcatgcgttc
    26221 gtcctctctg cgatacgcag aactgaacta cgggcacgag gattctcagc cacctcttct
    26281 tcgcccggca ttaacttgcc taatgctcgc agctgacggc cacccagttt tttgagctgc
    26341 tcttcagtca tcggtaaccc tgccggaact tgcggaccgc ggctgttttc acgcataaaa
    26401 cgtttcacaa tacggtcttc cagcgagtgg aagctgatga tcgaaagccg cccacccggg
    26461 gccagcacgt tgagcgagct ttttagcgcc tgctctatct cctccagttc actgtttacc
    26521 caaatgcgca ccgcctggaa ggtacgggtc gcgggatgtt taaacttatc tttcaccggc
    26581 gttgcagcag ccacgacttc cgccagttct ttggtgcggg tcatcggctg ttcgcggtta
    26641 cgctcgacaa tggcgcgggc aatgcgtttg gcaaaacgct cttcaccata ggttttcaat
    26701 acccaggcga tatcggcttc ttctgcggtt tgtagccatt cagcggctga ctgcccacgg
    26761 gttgggtcca tacgcatgtc cagcggacca tcgcgcataa aggaaaagcc acgttcagca
    26821 tcatcaagtt gcggtgaaga gacgccaaga tcgaggagaa tgccgtcgat cttgccgata
    26881 agatcgcgct cggcaacgta ttcgcccagc gcggagaaag gtccgtggat gatggagaag
    26941 cgcggatcat caatagtctt cgcaacggcg atagcctgcg ggtcgcgatc gatcgccagc
    27001 aaacgcccct cttcgccaag ctgcgagagg atcagacgtg agtgaccacc gcgaccaaaa
    27061 gtcccatcaa tgtagatgcc atcaggacgg atattgaggc cattaacggc ttcatccagc
    27121 agcaccgtag tatgtttata gttttccatc attttataga gacaagtcct gcagtcgctc
    27181 cgataagtct ccagtagcca actgctctgc gtcgatatct tccttgacct gttgatgcca
    27241 agttgtttca tcccacagct caaacttgtt gaactgtcca accagcatca cttcttttgt
    27301 cagcccggca tgttgccgca gtactggcgc gattaacaat cgacctgcgc catccatctg
    27361 acattcgctg gcatgaccta acagtaggcg ctgcacacgg cgctcaactg ggttcatgct
    27421 cgacagacgc gataattttt gctcgataat ttcccattca ggcagggggt aaagcagcag
    27481 gcacgggtga tgaatgtcaa tggtgcaaac catttgaccg gcagcgttct caagcagctg
    27541 ttcccgataa cgggtaggca ctgataagcg ccctttgctg tcgagattga ctaacgttgc
    27601 tccccggaac atgccagcct caccccttat tcccactttg ccccacaatt tcccactgaa
    27661 aggagtttac ggagcggagg aaaagcttgt caagccagtc acaaggcata ccgaggtaaa
    27721 aaacccgatg tttacggcta atatcagcgt tgtttatttt acgtccaacg cgcgaagcaa
    27781 attaacgtta tgaatagctg taagaaaaaa tccctcatcg tcatcactgt tttaaaatga
    27841 ctcactattt tccacagcaa atataaagtg tcagtttgcg acgcgagcgg cattttagga
    27901 catatcttcc ccggttaaca gtccttgtta cgtctgtgtg gcgcttgatg ccagcgggtt
    27961 tgcgcaaaag caaagaaaag tgtttgttaa atcggcaatt catcgccgca tgtaacaaaa
    28021 taatgcaaaa acgcgctgtc gatatcactt aattattgtg aatttcagct ggtgagttaa
    28081 ttaacgggcg ggtttaaaac catttatcaa taatagtcag gaatagtctt atttacttta
    28141 agcatattga tgtccagtcc cgtactctac gcgccagagg gaaattcacc tggcgcgtat
    28201 ttttgttcgc ggcttagcta cggctgagca caccgcggcg atagagatta cgtttaatgc
    28261 gcgttaaacc aggttttggc ttacgcggtt cgtccaggct tgccaggaca atctccagca
    28321 cacgctctgc gacatcgcgg tgacgttgag ccactgccag caccgggcac tgtaagaagt
    28381 cgagcagttc gttatcgcca aaggtggcaa ttgccaggtc agaaggcagt ttaccatcgc
    28441 gacgtagcgt gacatccatc accccttgca acaacgcaaa cgacgttgtg aacagcgcct
    28501 gcggcatcag atgcgtttcc agccattttt cgaataactg ggcagccgcc tcccgctcat
    28561 agctgttggc atacaggaaa tgcacttcgc gcggatcatc tttccaggca gtacggaaac
    28621 cttgttcacg caggaagctg acagaaagct ccggcagcgc gccaagataa agcaccgtct
    28681 cggcgggaaa cttacgtaac tcttccgcca gcatttcggc atcatcctga tcggcaccaa
    28741 ccacgctggt gaaatgttca cgatcgaggg cgcggtccag cgcgacaatc gggaacgggg
    28801 cgttagccca gcgttgataa aaaggatgct caggtggcaa cgacgtcgaa acaataatgg
    28861 catcaacctg acgctgtaaa aggtgctcaa tgcagcgcat ttcgttgtct ggctgatctt
    28921 ctgagcaggc aatcagcagt tgataacccc gttgccgcgc ctggcgctca agatagttag
    28981 cgatgcgggt atagctggtg ttctccagat cggggatcac aagaccaata gaacgtgtgc
    29041 gtccagcacg aagcccagct gccacggcgt tcgggtggta attgtgctca cgcaccacag
    29101 ccatgacttt ttcaacggtt ttgtcgctca cacggtattg cttcgctttg ccgttaataa
    29161 catagcttgc agtggtccgc gacactcccg ccagccgagc gatttcatcc agtttcacaa
    29221 ttgccccttg cgtaaaatgt aaaaaccata gccattgtac tggtatgggt taaattcatt
    29281 aacatctaag cgcagaaaat taactgcggc aactgctttt attccaggtt cccactgatt
    29341 tcgcaaaaaa agcccagcgt gacatgttgg gctgcaaatt gcacactgag atcattctca
    29401 acgcattatt ttatcgccgc gcgaaagtcc gaccacacca gagcgagcaa cttccacaat
    29461 tttcgccacc tcgcgaatcg atgctaaaaa tgcatcaagc ttatcgctgg tgcctgctaa
    29521 ttgaacggta taaagcgagg gggtgacatc gataatttgc ccacggaata tttccgtatt
    29581 acgtttcact tcgtcacgcc cgtaaccgct ggcctgaatt ttcaccagca taatttcccg
    29641 ctcaacatgc gcgccctgcc ccaactcact cacgcgcaag acatcgacca gcttgtgtaa
    29701 ttgcttttcg atctgctcaa gtactttttc atcgcccacg gtctggatgg tcatacgcga
    29761 taatgtcgga tcgtcggttg gcgcaacggt caggctttca atgttgtagc ctcgctggga
    29821 aaaaaggcca atcacgcggg ataacgcgcc tgattcattt tcgagtaaga ctgataatat
    29881 ccggcgcata atcaggttct ctccgttttg cttaaccaca tttcatccat tccgcccccg
    29941 cgaatctgca tcgggtagac gtgctcactg ccatcgacgg taacatcaac aaacaccagg
    30001 cgattattgc gcacctgttc cagcgcctcg ctaagtttgc tttccagctc atgcggatga
    30061 gagatctgga tcccgacgtg accataggct tccgccagac ggacgaaatc gggtagtgat
    30121 tgcatataag attgtgaatg acggccggaa tagatcatgt cctgccactg tttcaccatc
    30181 cccagatagc ggttattgag attcaccacc agtacgggca actcgtattg caacgcggta
    30241 gacagttcct gaatgttcat ctgaatactg ccgtcgccag tgacgcaaac cacggtttct
    30301 tctggcaacg ccattttgac gcccagtgcc gcaggtaaac caaaacccat cgtgccgagg
    30361 ccaccggaat tgatccagcg acgcggtttg tcgaatggat aataaagtgc agcaaacatc
    30421 tggtgctgcc cgacatcgga cgtcacgtaa gcgtctccct tcgtcaaccg ccaaagagtc
    30481 tcgatcaccg cctgcggttt aatcttttca ctgtgagtgt catatttcag gcactgacga
    30541 gcgcgccact gttcaatttg ctgccaccag tcgcggatct catccagtgg ttgatgggcg
    30601 gattcttgcg acaagagttc aagcatttgt tcgaggacct ggcgagcatc ccccacaatc
    30661 gggatatccg cagtcacggt tttagaaatg gaagtaggat caatatcgat atgcagaaca
    30721 gtggcatttg ggcagtactt tgccagattg ttcgtcgttc ggtcatcaaa tcgtaccccg
    30781 acggcgaaaa tcacatccgc gttatgcatc gtcatattgg cttcgtaggt accgtgcatt
    30841 cccagcatgc ccagtgcctg acgatgcgtt gccggaaacg cccccagccc catcaatgag
    30901 gaaacaacgg gcagattcaa cgcctccacc gtttctttca actgctgatg gcagcccgcc
    30961 atgattgccc caccgcctac gtagacaacc ggtttttttg ccactaccag cgtttgcaga
    31021 gcacgcttaa tttgcccttt atgtccggta gtagtgggat tgtaagaacg catactgacc
    31081 gactccggcc agacataggg taatttgttc gccggattaa gaatatcttt cggtaaatca
    31141 acgactactg gtccaggacg accacttgcc gccagccaga aagccttttt cagcacctgc
    31201 ggaatgtctt ccgtttgctt aaccagaaaa ctgtgtttaa ccactggtcg cgaaatcccc
    31261 accatgtcgc actcctgaaa ggcatcgtaa cctatcaacg aggtcgctac ctgcccggaa
    31321 aggacaacta atggaatgga atccatataa gcggtggcga tgccggtaat cgcattggtc
    31381 gcccctggac ccgacgttac cagcacgacg ccgacttccc cggtcgcgcg cgccagacca
    31441 tcggccatat gcactgccgc ctgctcatga cgaactaaaa catgatcgat accacccacg
    31501 gtatgcaatg catcgtaaat atcaaggact gcgcctccag gataaccgaa tacttgttta
    31561 acgccctgat cgataagcga tcggacgacc atctcggctc cagacaacat ctccatggcc
    31621 tgcctcactg tttgatggaa aaaatgtgta aaacacatta accgtccgat cttgcttaag
    31681 caattggcag ccagagacat aaacgcaggg taataagaat aaacaggagg aaagatgaaa
    31741 agaaacgata aaatcctcca ttacgaagga ttaaattgat aataaatcgg ctgaatccca
    31801 caacttacag caatttctct atttttttaa ttaatcctaa aatagagagc ccacacattc
    31861 agaataaaat tctacattca ataaaaaatg cagaataaac cagacattca tgtctgacct
    31921 attctgcatt cagttagcgt ttgcaaattg agactaattg ttcttccatc cactgatggc
    31981 ctttatcgcg cccggcagct tcatgccatg agagataaca ggttctgctg ttttgtttta
    32041 acggcagcgg taatacctgt aattctaagg attcagcgaa ctcttcagcc agccaacgcg
    32101 gcgcaatagc gaccaaatgc gtttgcgaca ccacgctaag tacgctcatc attgccatgc
    32161 cctgatacgc gatactggct tgcttatcta ccgtgtcata ccaaggttga ctaaatgacg
    32221 cgaaacgatc gagcgaaacc gccgcatgtt gttcgttata aacatcatgt ttcagtaacg
    32281 ggcctttaat tgttggatga tttttgctgg ctaccagcac catttcatct ttaaataatg
    32341 gcacgctggt aaattcagga cgatggaagt cttcataact aatcacaaac tccgtttcct
    32401 gataacgcag ctgatgttca gtgttctgat ttaatgaaga cttgaacata acatgtatat
    32461 ttggcgcaat ctgctcaatg tgattataaa tctgcgaggt cagaatgctg tctaacgggc
    32521 tgcaaacaca aagatgaaat acacgttcac tactcgcggg ttcaaaacct gaaccaggca
    32581 attcattttg tactagttgc aatgcctggc gaactgaacc aaaaagttga aatgcgcgag
    32641 cagtcggttg aataccacgg ccataacgaa caaaaagctc gtcattaaac atcaccttca
    32701 ggcgtgcaac agcgttactg accgcaggtt gcgacatacc cagaacatga gcggcacggg
    32761 taatgttttg ctcctgcatc acggcatcga aaacggttaa taagttgaga tcgaccatgc
    32821 gtagctgtgg cttgcttaac tccgccgtct ctgaatgatc tgtttgtacc tctggcatac
    32881 ttaactccac tgtcacactt aactcccttt cccttattgg aatgcagaga aataatcctg
    32941 aagaatatga tttatcat
//
LOCUS       DAJVUY010000027        32489 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.027, whole genome shotgun sequence.
ACCESSION   DAJVUY010000027 DAJVUY010000000
VERSION     DAJVUY010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32489
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.027"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            196..990
                     /gene="panB"
                     /locus_tag="OQQ72_001163"
     CDS             196..990
                     /gene="panB"
                     /locus_tag="OQQ72_001163"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HCS2010968.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1002..1853
                     /gene="panC"
                     /locus_tag="OQQ72_001164"
     CDS             1002..1853
                     /gene="panC"
                     /locus_tag="OQQ72_001164"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCS2010969.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2145..3041)
                     /gene="rpnC"
                     /locus_tag="OQQ72_001165"
     CDS             complement(2145..3041)
                     /gene="rpnC"
                     /locus_tag="OQQ72_001165"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnC"
                     /protein_id="HCS2010970.1"
                     /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQGKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3315..3695
                     /gene="panD"
                     /locus_tag="OQQ72_001166"
     CDS             3315..3695
                     /gene="panD"
                     /locus_tag="OQQ72_001166"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCS2010971.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3699..4899)
                     /locus_tag="OQQ72_001167"
                     /pseudo
     CDS             complement(3699..4899)
                     /locus_tag="OQQ72_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001727225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
     gene            complement(4994..5434)
                     /locus_tag="OQQ72_001168"
     CDS             complement(4994..5434)
                     /locus_tag="OQQ72_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS2010972.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5539..6309)
                     /locus_tag="OQQ72_001169"
     CDS             complement(5539..6309)
                     /locus_tag="OQQ72_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2010973.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6306..7232)
                     /locus_tag="OQQ72_001170"
     CDS             complement(6306..7232)
                     /locus_tag="OQQ72_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2010974.1"
                     /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKLETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7341..8003
                     /gene="can"
                     /locus_tag="OQQ72_001171"
     CDS             7341..8003
                     /gene="can"
                     /locus_tag="OQQ72_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HCS2010975.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="OQQ72_001172"
     CDS             complement(8044..8580)
                     /gene="hpt"
                     /locus_tag="OQQ72_001172"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004204384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HCS2010976.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8786..11176
                     /gene="gcd"
                     /locus_tag="OQQ72_001173"
     CDS             8786..11176
                     /gene="gcd"
                     /locus_tag="OQQ72_001173"
                     /EC_number="1.1.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HCS2010977.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPTEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN
                     GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDVK"
     gene            complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="OQQ72_001174"
     CDS             complement(11223..12773)
                     /gene="cueO"
                     /locus_tag="OQQ72_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HCS2010978.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12939..13286
                     /locus_tag="OQQ72_001175"
     CDS             12939..13286
                     /locus_tag="OQQ72_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HCS2010979.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13392..14258
                     /gene="speE"
                     /locus_tag="OQQ72_001176"
     CDS             13392..14258
                     /gene="speE"
                     /locus_tag="OQQ72_001176"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HCS2010980.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14274..15068
                     /gene="speD"
                     /locus_tag="OQQ72_001177"
     CDS             14274..15068
                     /gene="speD"
                     /locus_tag="OQQ72_001177"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HCS2010981.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15105..15467)
                     /locus_tag="OQQ72_001178"
     CDS             complement(15105..15467)
                     /locus_tag="OQQ72_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HCS2010982.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15642..18239)
                     /gene="acnB"
                     /locus_tag="OQQ72_001179"
     CDS             complement(15642..18239)
                     /gene="acnB"
                     /locus_tag="OQQ72_001179"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HCS2010983.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18594..20447
                     /locus_tag="OQQ72_001180"
     CDS             18594..20447
                     /locus_tag="OQQ72_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HCS2010984.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20518..21942)
                     /gene="lpdA"
                     /locus_tag="OQQ72_001181"
     CDS             complement(20518..21942)
                     /gene="lpdA"
                     /locus_tag="OQQ72_001181"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCS2010985.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22267..24159)
                     /gene="aceF"
                     /locus_tag="OQQ72_001182"
     CDS             complement(22267..24159)
                     /gene="aceF"
                     /locus_tag="OQQ72_001182"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HCS2010986.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24174..26837)
                     /gene="aceE"
                     /locus_tag="OQQ72_001183"
     CDS             complement(24174..26837)
                     /gene="aceE"
                     /locus_tag="OQQ72_001183"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008814576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCS2010987.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26998..27762)
                     /gene="pdhR"
                     /locus_tag="OQQ72_001184"
     CDS             complement(26998..27762)
                     /gene="pdhR"
                     /locus_tag="OQQ72_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HCS2010988.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28303..29676
                     /gene="aroP"
                     /locus_tag="OQQ72_001185"
     CDS             28303..29676
                     /gene="aroP"
                     /locus_tag="OQQ72_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HCS2010989.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29719..30573)
                     /gene="ampE"
                     /locus_tag="OQQ72_001186"
     CDS             complement(29719..30573)
                     /gene="ampE"
                     /locus_tag="OQQ72_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HCS2010990.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30570..31121)
                     /gene="ampD"
                     /locus_tag="OQQ72_001187"
     CDS             complement(30570..31121)
                     /gene="ampD"
                     /locus_tag="OQQ72_001187"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HCS2010991.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31209..32102
                     /gene="nadC"
                     /locus_tag="OQQ72_001188"
     CDS             31209..32102
                     /gene="nadC"
                     /locus_tag="OQQ72_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HCS2010992.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32305..>32489
                     /locus_tag="OQQ72_001189"
     CDS             32305..>32489
                     /locus_tag="OQQ72_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS2010993.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHGG"
BASE COUNT         7833 a         8833 c         8004 g         7819 t
ORIGIN      
        1 ccacgctaca acaggatgga actataccaa tagaagctgg tgagtttaaa gccaccagta
       61 ctttccaggt aacctaccct taataagtcc accgcaccgc catcatctgg cggtgcggta
      121 attgataaat cattgccccc accaatgtga ctgataaaat gccaggcaac acgacatcat
      181 ttatcaggac acgttatgaa accgaccacc attgcttcac ttcagaaatg taagcaggat
      241 aaaaagcgtt tcgcgaccat caccgcttac gactacagct tcgcgaaact atttgctgat
      301 gaaggactta acgtcatgct ggtaggcgac tcgctgggca tgacggttca gggtcacgac
      361 tccaccctgc cggtgaccgt tgccgatatc gcctaccaca ctgcctccgt acgtcgtggt
      421 gcgccaaact gcctgctgtt ggctgacctg ccgtttatgg cgtatgccac gccggaacaa
      481 gcctttgaaa acgccgcaac ggttatgcgt gccggtgcca atatggtcaa aattgagggc
      541 ggtgagtggc tggtcgaaac cgtaaaaatg ctgaccgaac gtgccgttcc tgtatgtggt
      601 cacttaggtt taaccccaca gtcagtgaat attttcggtg gctacaaagt tcaggggcgc
      661 ggcgatgaag cgggcgatca actgctcagc gatgcattag ccttagaagc cgctggggca
      721 cagctgctgg tgctggaatg cgtgccggtt gaactggcaa aacgtattac cgaagcactg
      781 gcgatcccgg ttattggcat tggcgcaggc aacgtcactg acgggcagat cctcgtgatg
      841 cacgacgcct tcggcattac cggcggtcac attcctaaat tcgctaaaaa tttcctcgcc
      901 gaaacgggcg acatccgcgc ggctgtgcgg cagtatatgg ctgaagtgga gtccggcgtt
      961 tatccgggcg aagaacacag tttccattaa ggagtcacgt tgtgttaatt atcgaaaccc
     1021 tgccgctgct gcgtcagcaa attcgccgcc tgcgtatgga aggcaagcgc gtggcgctgg
     1081 tgcctactat gggtaatctg cacgatggcc atatgaagct ggtcgacgaa gccaaagccc
     1141 gcgccgatgt ggtcgtcgtc agtattttcg ttaacccgat gcagttcgac cgcccggaag
     1201 atctggcacg ttatccacgg accttgcagg aggactgcga gaagctaaac aaacgtaaag
     1261 tggatttagt tttcgcccct tcggtaaaag agatctaccc gaacggtact gaaacccata
     1321 cttacgttga cgttcccggg ctttcgacca tgctggaagg cgcgagccgt ccggggcatt
     1381 ttcgcggcgt ttcgactatc gtcagcaagc tgtttaacct ggtccagccg gacatcgcct
     1441 gcttcggtga aaaggacttt cagcaactgg cgctaatccg caaaatggtt gccgatatgg
     1501 gcttcgatat tgaaattgtc ggcgtcccga ttatgcgcgc caaagatggc cttgcgctca
     1561 gttcccgtaa tggttatctg acggcggaac aacgcaaaat tgcgcccggt ctgtacaaag
     1621 ttttaagttc aattgccgac aaattgcagg ctggcgagcg ggatcttgat gaaattattg
     1681 ccattgcagg gcaagaactg aatgaaaaag gcttccgcgc cgatgatatt cagattcgcg
     1741 atgccgacac gttgctggaa gtctctgaaa ccagcaaacg agctgtaatt ctggtagccg
     1801 cctggcttgg cgatgcccgc ctgatcgaca acaaaatcgt cgaactggcg taatgctttt
     1861 actctaaata attcaagttg caggaaggcg gcaagcgagt gacaaattcg tcaggaacga
     1921 atttgcccag ccgcaggctg gccttcggtg agagacatgg atgtctctca ttaatcccca
     1981 ggagcttaca taagtaagtg actggggtta gcgaacgcag acacagcaca tgcaatttaa
     2041 agtatgacga gtataactgg cgctacggct gatggcgcca attattaatt tgccccacgt
     2101 catggcgatg gcgtctgtaa gcaattattc ataacgcaga caacttagtt aatcagccta
     2161 tcaatctcag caagagataa atttgtcatc tctgcaacgt cttcccgaga catcccttta
     2221 ctcagaaaac gctgggcgaa ttcttgcctt tcctcctgtc ttccctgctg aatccccttc
     2281 tcaatccctt tctcttcaaa ccactgcgcc agcgtcatca tagactcccc tcccgtttcc
     2341 ctgtctctca gcacaccata aaacaaatcc gcttgttcag tatgaccgcg ttgcagcata
     2401 tagttttgca tggcaactaa ctgacttccg ctagtgtacc cttcgtcaat cagcgtgacc
     2461 agttgctcca gcaataacat taagtcgcgc tggcgaatat gtttttgcag tagttcgaga
     2521 atcgcaatcc gccgatgttg catgatttcg tcatccggtg tgatggtgat atccaccagc
     2581 gggaaaggac tgttatagac gcgtcgtgcc agctccggcg agtaaaatat atcaaaccag
     2641 cacattgaga gcggataagg tgtggcctcg ccctgataaa acagtatcgg caccaccagc
     2701 ggcagcttat cgtgatccgc ctccagatgc cggtgcatgg cagcaataga ataacgcatc
     2761 atgcgaaagg ccattttctt atccggcttg ccttggtgtt caatcacaac atgcagataa
     2821 ccgggattgc cctgcatttg cacggaatag agcacgtccg tgctgtgtcc tttcaggctc
     2881 tcttcaatga aactccccga ctctaaatga agcgtgttga ggtcacaaag ttctcgtaat
     2941 tccactggca aatgtatctc cagaaagtcg cgagccgtct ccgcgtgcat taaaaattgt
     3001 ttaaacactg catcatgcgg tgtggtactc ggtgcatcca tcttccctgc cttccgtgtt
     3061 gtcttgcgtg aaggcagtat ccagtcaagg cgtgccatcg tcagccacct ctttagtgtt
     3121 taccgagcag cgttcagaga aatttcaatt ggttacagcc gttacatggc acgcttcggc
     3181 acggtacgca aactgctgat gtaaatgccg tcagatgagt agacactaaa caaaaatcgg
     3241 gcaatactgc gtgagaattt cctcaaagca ggcatcgcct gcttcgttaa cgacagggta
     3301 gaaaggtaga agttatgatt cgcacgatgc tgcagggcaa actccaccgc gtgaaagtga
     3361 ctcatgcgga cctacactat gaaggttctt gcgccattga ccaggatttt cttgacgcag
     3421 ccggtattct cgaaaacgaa gccattgata tctggaatgt caccaacggc aagcgtttct
     3481 ccacttatgc catcgcggca gaacgcggtt cgagaattat ttctgttaac ggtgcggcgg
     3541 cccactgcgc cagtgtcggc gatattgtca tcatcgccag cttcgttacc atgccagatg
     3601 aagaagctcg cacctggcga cccaacgtcg cctattttga aggcgacaat gaaatgaaac
     3661 gtaccgcgaa agcgattccg gtacaggttg cttgattgtt atccctgcgg ctggttactc
     3721 accagccgcg acatcgtctc cagcgaatcc gttcttaaga tataaagtcg ttttagtaac
     3781 aacggattat cccccggttt tactttgcct ttcatggttg tcaccgccag gtgaaatccg
     3841 gcatcgtttg ctgccttcac ggctttgtca ttaaatccgc caaacggata cgaaagatac
     3901 cagacatgcg gattaaattg cgccagagcg cggcgtgaac gtgcaaaatc aaacagaata
     3961 ttgtgttcac tacggctcgg taatatgggg cggcgataac catccacccg atgcaaaaaa
     4021 tgggtatgtg actggaaatc aaaaacatcg cgaatttcgt taagttcaga aacgctcata
     4081 aattgcagcg attttgggtc ccacttctgc gggtgacgtt tgatgcgcga ggtaacaata
     4141 aacgccgtcg ccttcatgcc atattgtttc aacacgggat acgcatagcg gctcaccgat
     4201 ttgaggccat catcaaaggt aatcaccacc gctcgcgcag ggagattgat cttattcttc
     4261 acgtaacctt ccagctgcac catgctcagt gtcgcgtatc ccctgtcgcg cagccaggcc
     4321 atctggttat tgaaagcgcg tactgaggtg gtcgtcgaag tatggcgaaa acgggtgttt
     4381 tcttcatcgc gcagaatatg gtgataggtt agcaccggca ggccattatc gggttgggca
     4441 tccagcgcgc tgatataggc cagtcgatcg ccaatacgga tctgatacca ggtttgattt
     4501 aacctgtctt tcagtttatg caaaatcggg tagcgcaaat tgtccgccag taccccataa
     4561 tggcgcactg cccgcactcg gcgcgttata gaccggcgta tctttccagg taattaagtt
     4621 ctgattactc agcggcttgt tgaggtcacc caaaccgtct tcaacttttt gtcgcccctg
     4681 aactggctcg agatgccctt tatcgataaa ccctttacca aagccaaaat taaatgcgta
     4741 ataacttgcg gcagtgggct ccacggcaat gatttgcccg gcccgaatat tccccacggt
     4801 caccatcttg tcgccaattt gcgcccagat cgcagcattt tcgatggttt gcatataacg
     4861 ggcaggtaac gcggcactaa cgcttgcggt aaacagcatc agcaggatga ataacagctt
     4921 gtttatacat gaaaaaataa ccgagggtga aacaacgctt gtattgtagc aaaagcgcca
     4981 tcagaatcgc gggttaatac tcatacaaat tatgtttgag gacaaaaggc ggattttttt
     5041 gttgttggtg ccaaagacta ctcacctccg gcgcacccag ttcgacaata cgctcgcgaa
     5101 actctgaact ggtcatggtt tcacggcaag ccatcatctg ttcaattaac ggtaacgtga
     5161 caccagaaat cacttcacaa cgggagtgtt tatggcttaa taatgaagcc acgcggtacg
     5221 gtggcgctcc ggctatatcg gttaagaaga tgacaccctc accagagtcc gcttcatgca
     5281 gagcatcgca catcatgcgg ctgagcatat tagagcttaa tccgcgccag aaattcacgg
     5341 cccggcactg aagaagtgcc ccatgttttt tctccagcgc atccagtatc tcttgcgccc
     5401 ggtcatcgtg acaggtaatt acccaaccta acatcgcctt cctccttagc cgaaaatcag
     5461 tctatcctga ccattgttga taaagggtga tagccgtcaa aactcctctc ccccgaatcc
     5521 agaggagagg aaatagcctt agctacgcaa accacgtcca cgttggatca gcgaccaaca
     5581 gatcaaataa aacaccacaa taaagaccac cagtacgcca aaggtagtgg ccagcggcac
     5641 atcatttata ccgaggaagc cgtagcggaa accactgatc atataaacga ttgggttcag
     5701 gtgcgacagc ccttgccaga acggcggcaa caaagtcagg gagtaaaaca ccccgcccaa
     5761 atacgtgagt ggcgttaaca caaaggttgg caccaggctg atgtcatcga acgttttggc
     5821 aaacacgccg ttcagcaaac ccgcaaggga gaatagcacc gccgtgagca ccagggttaa
     5881 ggcaacgaat acccacgaat gcacctgaaa cggcacaaaa aacagtgaaa ttgccgtcac
     5941 cagaatgcca acaaacagac cacgcgccac gccaccgccg acatatccgg caataatgac
     6001 gtgagtcgga accggcgcta ccagcagctc ttcaatatta cgctggaact tggcaccaaa
     6061 aaatgatgac gcgacgttag cgtaggcatt ggtgatcacc gacatcatga tcagccccgg
     6121 tacgatgaac tgcatatagc tgaagccatg catatcgcca atacgcgaac ctatcaggtt
     6181 accgaagata ataaagtaaa gggtcatggt gatgactggc ggcaccagcg tctgcaccca
     6241 gatacgcata aagcgatgga tctctttcgc ccagatgctt tttagcgcca cccagtaaag
     6301 atgcatcatg cgcgatctcc ttgtttttca ttaaccagtg aaacaaacag ctcttccaga
     6361 cggttagctt tgttacgcat acttaatacc tgaatgccct gctcacttaa ctgcgtaaat
     6421 acgctgttga tcccctgctc acgcagcact tcaacttcca gcgtcgcggt atcgaccagt
     6481 cgatactgat agccatcgag cttcggtaac gggcttttcg gtgcgagatc gagaataaag
     6541 gtttccaatt tcagcttcgc cagcagcgcc ttcatcgagg tattttccac cagctcaccg
     6601 tgttgaataa tgccgatatt gcggcacagc atttctgctt cttccaggta gtgtgtagtg
     6661 agaatgatgg tggtgccttt gtcgtttaaa tccttcaaaa agccccacat tgagcggcga
     6721 agttcaatat ccacgcctgc ggtcggttcg tcgagaatca gtagtttagg ttcatgcatt
     6781 aacgcacggg caatcattaa acggcgcttc atcccgccag ataacatacg cgcacgttcg
     6841 ttgcgttttc cccataaatc gagttgtttg agatattttt cgctgcggat gtacgcttct
     6901 ttgcgctcca cgccgtagta ccctgcctga ttcaccacaa tttgctgcac ggtttcaaac
     6961 gggttgaagt taaattcctg cggcaccagt cccaactgac gtttagcgtt cacgacatcc
     7021 ttctcgagat cgtaaccaaa tacgctgacc cgcccggagg ttttatttac cagagagctg
     7081 ataataccga tagtggtcga tttcccggcc ccgttcggcc cgagaagcgc ataaaaatca
     7141 cccgcttcga cctgcaaatc tattccacga agcgcctgaa cgccgcctgg ataggttttt
     7201 ttaagctgtt gaagttccag tgcaatggtc ataaattttt acttacctta cgttcttaca
     7261 ctttatctgt ggtttaaatc gtcccggagt taccctatat tagccaaacg taattatttg
     7321 gttacaggtc gttaacctcc atgaaagaca tagatacact catcagcaac aatgcactat
     7381 ggtcaaaaat gctggtggaa gaggatcccg ggttttttga gaaactggca caagcgcaaa
     7441 aaccgcactt tctatggatt ggatgttccg acagtcgcgt tcctgcagaa cgtttaaccg
     7501 gtcttgagcc gggcgaactc tttgttcacc gtaatgttgc taacctggtc attcacaccg
     7561 acctgaactg cctttccgtg gttcagtatg cagtggatgt actagaagtt gaacacatta
     7621 ttatctgtgg ccactacggt tgcggcggcg tacaagccgc agttgaaaac ccggaactgg
     7681 ggcttatcaa caactggctg ctgcatatcc gcgatatctg gttcaaacat agctcattgc
     7741 tcggcgaaat gccgcaagag cgccgtctgg ataccttgtg tgaactgaac gtcatggaac
     7801 aggtgtataa cctaggccac tccaccatta tgcaatcagc gtggaaacgc gggcagaaag
     7861 ttaccattca cggctgggcc tatggcattc acgacggctt gctgcgtgat ctggatgtta
     7921 ctgccaccaa ccgcgaaacc cttgagcaac gttaccgtca cgggatttcc aacctcaagc
     7981 tgaaacacgc caaccacaaa taaaaatgcc atgccggatg caacacatcc ggcaacttca
     8041 cacttactcg tccagcagaa tcactttgcc gatatacggc agatgacggt aacgctgtgc
     8101 gtaatcaatg ccgtaaccca ccacaaactc atccgggatc gagaaaccga taaattctac
     8161 cgggacgttc acttcacgac gggacggttt atccagcagc gtacaaatcg ccagcgactt
     8221 cggttcgcgc aggcttaaga tctcacgcac tttcgacagt gtattccccg agtcgatgat
     8281 atcttcaaca atcagcacgt ccttgccacg gatatcttca tccagatctt tgaggatttt
     8341 cacatcacgg gtggtggaca tgccgctacc gtagctggag gcggtcataa agtcgacttc
     8401 atgagatacc tgaacttcac ggcacaggtc cgccataaac ataaatgagc cacgcagcag
     8461 acccaccagc accatatcgc tgccgctgtc tttgtaacgc tcagtaatct gacgacccag
     8521 ttcggcgata cgcgctttaa tctccgcttc ggggatcatt acttctacag tatgtttcat
     8581 atctctaacc atatgattta aaaacaaatc acttcgcacg ggcaggtttt ggcaccgcaa
     8641 caaagcgcaa gacacgcagt ataccagtaa aactattcat tcgcggaatc tgttaataaa
     8701 gctcgaattg tgatgacgat cacacatgtt aaaacctata attaattgct actaaaatat
     8761 taatgaattg aaatggtgtc tctttatggc aattaacaat acaggctcgc gacgattact
     8821 cgtcacgcta acagtccttt ttgcagcgct ttgcgggctg tatctactca ttggcggagg
     8881 ctggctggtc gcgattggcg gctcctggta ctaccctatc gctggccttg tgatgctcgg
     8941 cgtcgcctgg atgctgtggc gcagtaaacg tgccgcgctt tggctatacg ccgccctgct
     9001 gctcggcacc atgatttggg gcgtctggga agttggtttc gacttctggg cgctgactcc
     9061 gcgcagcgat attctggtct tcttcggcat ctggctgatc ctgccgtttg tctggcgtcg
     9121 cctggtcatt cctgccagcg gcgcagttgc cgcactggtg gtggcactgc tgattagcgg
     9181 tagtatcctg acctgggccg gatttaacga tccgcaggaa atcaacggca ccttaagcgc
     9241 cgatgccaca cctacggaag ctatctcacc cgttgccgat caggactggc ctgcctatgg
     9301 tcgcaatcag gaaggtcaac gcttttcacc tctgaaacaa attaacgccg ataacgtcca
     9361 taatctgaaa gaagcctggg tgttccgtac tggcgatgtg aagcagccga acgatccggg
     9421 cgaaatcacc aatgaagtga cgccgattaa agtgggcgac accctttacc tgtgtaccgc
     9481 tcaccagcgc ctgtttgcgc tcgatgccgc cagcggcaaa gagaaatggc attacgatcc
     9541 taagctgaaa actaacgagt ctttccagca cgtaacctgc cgtggcgtct cttatcatga
     9601 agccaaagca gaaacggctt cgccggaagt gatggcggat tgcccgcgtc gtatcattct
     9661 tccggtcaat gatggtcgac tgattgcgat taacgctgaa aacggcaaac tgtgcgaaac
     9721 cttcgccaat aaaggcgtgc tcaatctgca aagcaatatg ccagacacca aaccgggtct
     9781 gtatgaaccg acttcgccac cgattatcac cgataaaacc atcgtgatgg caggttcagt
     9841 taccgataac ttctcaaccc gcgaaacgtc tggcgtgatc cgtggttttg atgtcaacac
     9901 cggggagctg ctgtgggctt ttgatcccgg cgcgaaagat ccgaacgcaa tcccgtctga
     9961 cgaacacacc tttaccttta actcgccaaa ctcctgggca ccagcggcct atgacgcgaa
    10021 gctggatctg gtctatctgc cgatgggcgt gaccacgccg gatatctggg gcggtaaccg
    10081 cacaccggaa caggaacgtt atgccagctc gattctggcg ctgaatgcca ctaccgggaa
    10141 actggcgtgg agctaccaga ccgttcacca cgacctgtgg gacatggatc ttccggcaca
    10201 gccgacgctg gcggacatca ccgttaatgg tcagaaagtg ccagttattt acgctccggc
    10261 gaaaaccggc aacatttttg tgctcgatcg tcgcaatggc gaactggtgg ttccggcccc
    10321 ggaaaaaccg gtgccgcaag gtgctgcgaa aggcgattac gttactccga cccagccgtt
    10381 ctctgaactg agcttccgtc cgaagaaaga tttgagcggt gcggatatgt ggggagccac
    10441 catgtttgac caactggtgt gccgcgtgat gttccaccag atgcgctatg aaggcatttt
    10501 cacgccgcca tctgaacagg gcacgctggt cttcccgggt aacctgggaa tgtttgaatg
    10561 gggcgggatt tccgttgatc caaatcgtga agtggcaatt gccaacccaa tggcactgcc
    10621 gtttgtttcg aaactgatcc cacgcggtcc gggtaacccg atggagcagc cgaaagatgc
    10681 caaaggcacg ggtacggaat ccggcattca gccacagtac ggtgtaccgt atggtgtcac
    10741 gctcaacccg ttcctctcac cgtttggtct gccgtgtaaa cagccagcat ggggttatat
    10801 ctcggcgctg gatctgaaaa ccaatgaagt ggtgtggaag aaacgtattg gtacgccgca
    10861 ggacagtatg ccgttcccga tgcctgtacc ggtgccgttc aatatgggta tgccgatgct
    10921 gggcgggcca atctccacgg cgggtaacgt gctgtttatc gccgctacgg cagataacta
    10981 cctgcgcgct tacaacatga gcaacggtga aaaactgtgg cagggtcgtt taccagcggg
    11041 tggtcaggcg acgccaatga cctatgaagt gaatggtaag cagtatgtgg tgatctccgc
    11101 aggcggtcac ggttcatttg gtacgaagat gggcgactat attgtggctt atgccctgcc
    11161 ggatgatgtg aaataaccat aatgcccgga gagatccggg catatttccg aatacggtct
    11221 ttttataccg taaaccctaa catcatcccc gtatcttcat gctccagcag atggcagtgc
    11281 gccatataag catgttcttt cggtgcgtcg tgattaaact tcaccagcac ttcactgaca
    11341 ttgccttcta ccttaacggt atctttccag cccgcgcgat gagccgctgg cggtttgcca
    11401 ttttctgaca agatacggaa ctgcgtgccg tgaatatgga acggatgcag catcatgtcg
    11461 cccacgccag agataaccca acgttcgtac tgccctttcg ccgccgcaaa catcggctta
    11521 ttcatatcaa acgcctgacc gttgatttta ttggcatggt ggaaatcgaa cttcccgccg
    11581 tggttcatat gattcatatt accgtgcccc atatggccca tcatctggct gtgatccatt
    11641 ccggccatcg cctgatcgcc atatttctcc attagcatct gcatacccat catatcgagc
    11701 atcgggtcca tagaaagttg cagcttgcgt accgtcagcc cttccagcga aggtaacgca
    11761 ggcaggctac ttaatgtgtc tggcaaagca ccggaggcac taatagcaat cggctgaatc
    11821 cgcattaccg gatgcggctt gtcaaacggc gcaatcgcca tccccatctg gctgaccggt
    11881 agcgtcacca ggtcaaaggg tttgttgtcg ttaacctcca ccagcacttc aaaacgctcg
    11941 cccatcagca ccggcagctc gctcaccttc accggttcag gtagcagacc accgtcgctg
    12001 gcaatcacat acagcgggcg attgtcgctg gtggcgaaat tgagcgagcg ggcattacag
    12061 ccattgagca aacgcaggcg cagccaacca cgcggggcag cgtgttgtgg gtagattgca
    12121 ccgttggtca gcagcgtatc gccaaaccag cccacggcgg cggtcatcac atccagttga
    12181 taatcaatct gcccatcagc gttaaatttt ttatcctgaa caatcaccgg aacatcatcg
    12241 ataccccact gttttggcag cattaatttc aggatctcgt catcttcaat taccaccagc
    12301 ccagccaacc ccatcgccac ctgtcgccca gtcttgccat gttgatgtgg atggaaccag
    12361 caagtagcgg caggttgatc aacgttcaac gtcaccgagc gcttgccacc tggcggaata
    12421 attccctgcg ggccgccgtc gacttcaccc ggtacttcca gcccgtgcca gtgcaacgtc
    12481 gtctcttccg tcagttggtt atagatatca accgttaccg ctttgccgcg ctgtaatttc
    12541 accgccggcc ccagcagatt gccgttatag ccccaggtag ttgcagtttt ctcgccaaag
    12601 gtagactgac ctgcgccaat agttaactga atgcgattac gggcatcggt cgtgagcaaa
    12661 tcagggatcg gtaacgttgg gcgttccgcc gcaaagactg cgcggctcca cagcggcaag
    12721 gctgaagcca cacccagcgc gacggaatat tttaagaaat cacgacgttg catagttatt
    12781 tccttattct taagcaggcg aaacaaaatc aaacgttgag catagtcctt ccccttacgg
    12841 gaaggtcaag ccgcagacac aatttaatcg acaataatgg tcgtcgcctc gctcgcagtg
    12901 tgctaacgtt tatcttcttt aagcccctgg tagaagcaat gaagacgttt ttcagaacag
    12961 tgttattcgg cagcctgatg gccgtttgcg caaacagtta cgcgctcagc gagtctgaag
    13021 ccgaagatat ggccgattta acggcagttt ttgtctttct gaagaacgat tgtggttacc
    13081 agaacttacc taacgggcaa attcgtcgcg cactggtctt tttcgcccag caaaaccagt
    13141 gggatctcag taattacgac accttcgaca tgaaagccct cggtgaagac agctaccgcg
    13201 atctcagcgg cattggcatt cccgtcgcta aaaagtgcaa agccttggcc cgcgattcct
    13261 taagcctgct tgcctacgtc aaataatccc tgataccttt ttgtagaaat attgaccgtg
    13321 catccgcggt caatgttagc tattatgttg cgcccttttt ttacgggtgt taacaaagga
    13381 ggtatcaacc catggccgaa aaaaaacagt ggcatgaaac gctacacgac cagtttgggc
    13441 agtactttgc ggtagataac gttctgtatc atgaaaagac cgatcaccaa gatctgatca
    13501 tttttgagaa cgctgcattt ggtcgcgtaa tggcgctgga tggcgtagta caaaccaccg
    13561 agcgcgacga gtttatctat catgagatga tgacccatgt tccgctactg gcccacggtc
    13621 acgcgaaaca tgtgctgatt atcggcggcg gcgacggtgc catgctgcgt gaagtaaccc
    13681 gacataaaaa cgttgagtca atcacgatgg tagaaatcga tgcgggtgtc gtgtcgttct
    13741 gccgtcagta tctgcccaac cataacgccg gtagctacga cgatccgcgc tttaagctgg
    13801 tgatcgacga tggcgtcaat ttcgttaatc aaaccagcca gacctttgat gtcattatct
    13861 ccgactgcac cgatcctatc ggtcccggcg aaagtctgtt cacctcagca ttttatgaag
    13921 gctgcaaacg ttgcctgaat cctagcggta tcttcgtcgc acaaaacggc gtctgctttt
    13981 tacagcagga agaagccatc gacagccatc gcaaactcag ccattacttc agcgacgttg
    14041 gcttttatca ggcggcgatc ccgacctatt acggcggtat catgactttt gcatgggcga
    14101 cagataacga cgccttacgc catctctcaa ccgaaattat tcaggcgcgt tttctcgctt
    14161 ctggcctgaa atgccgttat tacaatccgg caatccatac ggcagctttt gccttacctc
    14221 agtatctgca agatgcactg gcttcacagc cgtcctaagg agaagataag aaattgaaaa
    14281 aactgaaact gcatggcttt aataatctga ccaaaagtct gagtttttgt atttacgata
    14341 tctgctacgc caaaactgcc gaagagcgcg acggttatat tgcttatatc gatgaactct
    14401 ataatgccaa ccgtctgacc gaaatcctgt cagaaacctg ttccattatc ggggccaata
    14461 ttcttaacat cgcccgccag gattacgaac cacagggtgc cagcgtcact attctggtga
    14521 gtgaagaacc ggttgacccg aaactcatcg acaaaacaga acaccccggc ccactgccag
    14581 aaacggtcgt tgcccatctc gataaaagtc atatttgcgt acatacctac ccggaaagcc
    14641 atcctgaagg tggtttatgt accttccgcg ccgatattga agtctctacc tgcggcgtga
    14701 tttctccgct gaaggcgctg aattacctga tccaccagct tgagtccgat atcgtaacca
    14761 ttgattatcg cgtgcgcggt tttacccgcg acattaacgg tatgaagcac tttatcgacc
    14821 atgagattaa ttcgattcag aactttatgt ctgacgatat gaaggcgctg tatgacatgg
    14881 tggatgtaaa cgtctatcag gaaaatatct tccataccaa gatgttgctt aaagagttcg
    14941 accttaagca ctacatgttc cacaccaaac cggaagattt aaccgacagc gagcgccagg
    15001 aaattaccgc tgcgctgtgg aaagaaatgc gcgagattta ttacgggcgc aatatgccag
    15061 ctgtttaacg gctctggcgg agctccaggc tccgccagat ttatttactt ctgctgcacg
    15121 aaattgcggt aagccgccac gacctgcaga aaatcctcaa cgccgcatag cgacaggctt
    15181 tcttcgtcgt agtagttcat cccctcttcc atttcatcgc cagcgaattc cagttgattg
    15241 gcgcgaacca tcacctcttc accgtccatc cacagggtgt attcatgccc tgcccgttgc
    15301 caggaccgtt cgctaccttt cagtgcgtgc gctgcttgtt ccacttcatc aagcaaggcc
    15361 aggttttctt tcacctcttc attaaaccag tgcccgacca cttcatgccc catggacata
    15421 cgcaccttta ccactccggt aatatcgcgc agaaattcgt aatccatagt gtgttcctct
    15481 gctcccggca atgcgccgaa atcgcattgc gccattgatg taattatcgc agccttaccg
    15541 gagaaaaaca gcggaacggc gatggtttag aaataaaaaa tgcccgggaa tctcattcac
    15601 cgggcattgt gtcgtttatg cgcagcgcgt gcgcttactt attacaccgc agtctggaaa
    15661 atcaccccat cggctttttc ggtgtactga gaaagttggt tgaagttcag ataacgataa
    15721 gtatcaacgg cagttttatc tacttgcgca acgtaggtct ggtactcttc cggcgtcggc
    15781 agtttgccaa tcagcgccgc aacagccgcc agttctgcag aagccaggaa gacattcgcg
    15841 ccagtcccca gacggttcgg gaagttacgg gtagaggtgg aaaccaccgt cgcaccgtct
    15901 gctacacgcg cctggttacc catacacaga gaacagcccg ggatctcgat acgagccccg
    15961 ctcttaccga agacgctgta gtagccttct tcagtcaact gtgcggcgtc catacgggtt
    16021 ggcggtgcca cccacaggcg ggtcggcaac tggcctttat gcgcatccag cagtttaccc
    16081 gcagcacgga agtgaccgat gttagtcatg caagaaccga taaatacttc gtcgatcttc
    16141 tcgccctgta ccgcagacag cggacgcgcg tcatccgggt cgttcggagc acacaggatt
    16201 ggctctttaa tatccgccag atcgatgtca atcactgccg cgtattccgc atctgcatct
    16261 gcttccagca gctcaggatt cgccagccat ttttccatgc cctgaatacg acgttccagg
    16321 gtacgacgat cgccgtaacc ttccgcgatc atccacttca gcaggacgat attagagtta
    16381 aggtattcga tgattggttc tttgttcagc ttgatagtac aaccagcggc agaacgctca
    16441 gcggacgcat cggtaagctc aaaggcctgc tcaactttca gatccggcag accttcaatt
    16501 tccagaatgc ggccagagaa gatgtttttc ttgcctttct tctcaacggt cagcagacct
    16561 tgtttgatgg catacagcgg aatggcgtgt accagatcgc gcagggtgat gcccggctgc
    16621 attttgcctt tgaagcgcac cagaacggat tccggcatat ccagcggcat tacgcctgtt
    16681 gcggctgcaa atgccaccag accagaaccc gccgggaaag agataccgat cgggaaacgg
    16741 gtatgggagt cacctccggt accgacggta tccggcagca gcatacggtt cagccaggag
    16801 tggattacgc cgtcacccgg acgcagcgac acaccgccac ggttcataat gaagtccggc
    16861 agcgtgtggt gcgtgttcac gtcaactggc ttcggatacg ccgcggtgtg gcagaaagac
    16921 tgcatcacca ggtcagccga gaagcccagg cacgccaggt ctttcagttc atcacgggtc
    16981 atcgggccgg tagtgtcctg tgaacctaca gaagtcattt tcggttcgca gtacgcgccc
    17041 ggacgaatgc ctttcacgcc acaggcacgg cctaccattt tctgcgccag cgagaagccg
    17101 cgatcgctct cagcgacatc tttcgcctga cggaacacat cactgtgcgg cagaccaagt
    17161 gcttcacgcg ctttggtggt caggccacgc ccgataatca gcgggatacg gccgccagca
    17221 cgcacttcat caatcagcac gtcggttttc agttcgaagg tcgccagcag ttcgcctgtt
    17281 tcgtggttac gcacttcacc tttgtacggg taaacgtcaa tcacgtcgcc catgttcagg
    17341 ttagagacgt cgacttcgat tggcagtgca cccgcgtctt ccatcgtgtt aaagaagatg
    17401 ggtgcaattt taccgccgag gcacaaacca ccgccgcgtt tgttcggcac atgtggaata
    17461 tcatcgccca taaaccacag aacggagttc gtggcggatt tacgcgatga acccgtaccc
    17521 acaacgtcac cgacgtacgc cagcgggaaa cctttctgtt gcagagcttc aatctgtttg
    17581 atcgggccaa caacacctgg ctggtctggc tcaatacctt cacgggcgtt tttcagcatc
    17641 gccagcgcgt gcagtgggat atccgggcgc gaccacgcat ccggtgccgg agaaaggtca
    17701 tcggtgttgg tttcgccagt gactttgaag acggtaacgg tcagtttttc agccagcgcc
    17761 gggcgattca gaaaccattc ggcatccgcc caggactgca ttacctgctt cgcatattcg
    17821 ttgcctgctt tcgctttctc ttctacgtca tagaagttat cgaacatcag cagtgtgtga
    17881 gaaagtgctt tggcagcgat cggtgccagt ttggcatcat ccagcgcgtc gatcagcgga
    17941 tgaatgttgt aaccaccctg catggtgccc agcagttcga tggctttttc cggagtcagc
    18001 agaggggatt tggcttcgcc tttcgcgata gcagccagga agcctgcttt gacataggcg
    18061 gcttcatcga cgccaggggg aacacggttg gttaacagat ctaacaggaa ttcttcttcg
    18121 cccgcgggcg ggtttttcag cagctctaca agtgcggcca tttggtttgc atccaggggt
    18181 ttgggcgcaa tcccctcagc ggcacgctca gctacgtgct tacggtattc ttctagcacg
    18241 acggttctcc tcgctctcat tgtcatagtg cggcaggcga ttctcttcac gctcctgtga
    18301 gacagcagtt tgtagggtaa atgcccagta ccgcaacggg cagaatagca ggattttgac
    18361 gacgtgttaa tctgtttaca aaaaagcaac ataaaaaagt ggctgaatcg ttaaggatgg
    18421 tctagagatt gtttccctcc gtaaaaactt cgttaattcg catggtgata atcacctttc
    18481 tcaacgaatc ccaagattag tcaaaattta aactaccgcc tctttatact cggattaaca
    18541 gcacctgcgg gtggcagttc gccgaccatt gcgatttcct tgagatccga attatgaaaa
    18601 tgactttgcc gtttaaaccc catgtgctgg cactaatttg cagtgccggg ctttgtgccg
    18661 cctctgccgg gctatatata aaaagccgca cagtggaagc ggctgtggaa acgcaatcga
    18721 cacaactggc tgtgtctgac gctgccgcgg ttacgcttcc tgcaacggtt tccgcgcctc
    18781 ccgtaacacc cgccgtcgtt aaatccgcat tcagcactgc acaaatagat caatgggtcg
    18841 cgcccgtcgc gctgtatccc gacgccctac tttcgcaggt gctgatggca tcaacctatc
    18901 cggcaaacgt tgctcaagca gtgcaatggt cgcacgataa tccacttaaa caaggcgatg
    18961 ctgctattca ggcggtatct gaccagccgt gggacgccag cgttaaatca ctggtggcct
    19021 ttccacaatt gatggcattg atgggcgaaa acccgcaatg ggtgcaaaac ctgggcgatg
    19081 cttttctggc gcagccgcag gacgtgatgg actcggtaca gcgattgcgg caactggcgc
    19141 aacaaaccgg ttcgctgaag tcatcaaacg aacaaaaagt tattaccaca acgaagaaag
    19201 ctgtaccggt aaaacagaca gtcacggcac ccgtcatacc atccaatacc gttttaactg
    19261 ccagccccgt cattacagag cctgcaacaa ccgtcatttc cattgagccc gccaatcctg
    19321 atgtggtcta tattcccaac tacaacccaa ccgtggttta cgggaactgg gccaatactg
    19381 cgtatccgcc ggtttatctg ccaccaccag ccggagaacc gtttattgac agctttgtgc
    19441 gcggattcgg ctatagcatg ggtgttgcta ccacgtacgc actattcagc agcatcgact
    19501 gggatgacga cgatcatgac catcatcatc atgacgatga tgattatcat caccacgatg
    19561 gcggtcatcg tgacggtaat ggctggcaac acaacggcga caacatcaat atcgacgtca
    19621 acaatttcaa ccgtatcacc ggtgagcatc ttactgataa gaatatggca tggcggcaca
    19681 atccaaacta ccgtaatggt gtgccctatc atgatcagga tatggcaaag cggtttcatc
    19741 aaaccgatgt caacggcgga atgagtgcca cgcagctacc tgctccaaca cgcgacagcc
    19801 agcgtcaggc ggcagcaagt cagtttcagc aacgaacaca cgccgccccc gtcattacac
    19861 gagataccca acgtcaggca gcggcacagc ggtttaatga agctgaacac tatgggagct
    19921 atgacgactt ccgcgacttc agccgtcgcc aacccctgac ccagcaacaa aaggacgccg
    19981 ctcgtcagcg ttatcagtca gcttctcctg agcagcgcca ggcagttcgc gagagaatgc
    20041 agactaaccc gcagatccag cagcgaagag aggcagcgcg tgagcgcatt cagcccgcct
    20101 cgcctgagca gcgccaggca gtccgcgaga aaatgcagac taacccacag atccagcagc
    20161 gaagagacgc agcgcgtgag cgtattcagt cagcctcgcc tgagcagcgc caggtgttta
    20221 aggaaaaagt acagcagcgc ccactgaacc aacagcaacg tgataacgcc cgccagcgtg
    20281 ttcaatcagc atcacctgaa caacgtcagg tttttcggga gagagttcag gagagccgcc
    20341 cacaacgtct aaacgacagt aaccgtactg ccagattgaa taacgatcaa cggtcagcag
    20401 tacgcgaacg tctctctgag cgcggagcaa ggcgactgga aaggtaaatt acagacgtaa
    20461 aaaaagcggc gtggttagcc gcttttttaa ttgccggatg ttccggcaaa cgaaaaatta
    20521 cttcttcttc gctttcgggt tcggcaggtc ggtaatgcta ccttcgaaca cttctgccgc
    20581 caggcccaca gactcgtgca gagtcgggtg cgcatggatg gtcagcgcga tgtcttcagc
    20641 gtcacaaccc atttcgattg ccaggccgat ttcacccagc agctcgccgc cgttggtacc
    20701 gacaatcgca ccaccgatca cacggtgaga ttctttgtcg aaaatcagct tggtcatacc
    20761 gtctgcgcag tcggaagcga tagcacgacc agaagcagcc cacgggaagg tggcggtttc
    20821 atagctgatg cctttctctt tcgcttcttt ctcagtcaga cctacccatg caacttctgg
    20881 ttcggtatag gcgatagacg ggataacttt cggatcgaag tagtgttttt taccggcgat
    20941 aacttcagcg gcaacgtgac cttcgtgaac acctttgtgt gccagcatcg gctgaccaac
    21001 gatatcgccg atagcaaaga tgtgcggtac gttggtacgc agctgtttgt caacgcggat
    21061 gaaaccacgg tcgtccactt ccacgccagc tttgcctgcg tcgaggtttt taccgttcgg
    21121 cacacgacca atcgctacca gcacggcgtc gtaacgctgc ggttcagcgg gtgctttttt
    21181 gccttccatc gtcacataaa taccgtcttc tttcgcttca acggcggtaa ctttggtttc
    21241 cagcatcagg ttgaatttct tgctgatacg cttggtgaag actttaacga tgtctttgtc
    21301 agctgccggg ataacctggt cgaacatttc aaccacgtca atctgtgaac ccagcgcgtg
    21361 gtatacggtg cccatttcca gaccgatgat accgccaccc attaccagca ggcgttctgg
    21421 tacttctttc agttccagcg cgtcagtgga gtcccagata cgcggatctt catgcggaat
    21481 aaacggcagt tggatcgggc gagaacccgc tgcaatgatc gcgttgtcga agttgatcac
    21541 ggttttaccg ttctcacctt caacttccag ggtgttagcc ccggtaaatt tacccagacc
    21601 gttgaccact ttgactttgc ggcctttcgc cataccagcc agaccaccgg tcagctgatt
    21661 gatcactttc tctttccagg tacgaatctt gtcaatatcg gttttcggtt cgccgaagac
    21721 gataccgtgt tcagccagcg ctttggcttc ttcgataact tttgctacgt gcagcagtgc
    21781 tttagaaggg atacagccga cgttcaggca aacaccgcca agggtgttgt aacgttctac
    21841 gattacggtt tccagaccta aatcagcgca acggaaggca gcggagtaac ctgcggggcc
    21901 tgccccaagt accacgacct gagttttgat ttcagtactc atcatgacct ctatatattt
    21961 atctccggcg gtcatacccg tcgtctttca ggccgcagcg gcgttagctt cacgccctca
    22021 ccccagtcac ttacttatgt aagcccctgg ggattctggc gcttgctacc ttgctgcacc
    22081 cagaaatcca tagggtatgt gaagtaatac cctaaccacc accgggtcgt tctatccgtc
    22141 ggtattttac aaaattgtta acaattttta aacaacaaac ggcaaccgat ttgtctattc
    22201 gctaataacc tcaatacatt catgagatta ccagaaaaaa gccggccgtt gggccggctc
    22261 ttttacttac atcaccagac ggcgaatgtc agacagcgtg ttgttaatga tggtaatgaa
    22321 acgggcacca tcagcaccgt cgatcacgcg gtggtcgaag gagagagaaa tcggcagcat
    22381 cagacgcggc acgaactctt taccattcca caccggctcc atcgcggact tggaaacgcc
    22441 gaggatagcc acttccggcg cgttcacaat cggcgcgaag tgggtagtac ccaggccgcc
    22501 gatgctggag atggtgaagc aaccgccctg catttcgccc gcagtcagct taccgtcacg
    22561 cgctttctta gaaatagtca tcagctcgcg agacagctcg atgatgcctt tcttgttgac
    22621 gtctttgaat accggaacaa ccagaccgtt cggggtatcc accgccacac cgatgttgat
    22681 gtatttcttc agggtcagac gctgaccgtc ttccgacagc gaactattga agcgaggcat
    22741 ctgctcaaga gctgcagcaa cggctttcat gatgaagaca accggggtga tcttcacatc
    22801 cagcttacgt ttcgccgctt cttcgttctg ctgtttacgg aacgcttcca gctcggtgat
    22861 atcggttttg tcgaagtggg taacatgcgg gatcatcacc cagttacggc tcaggttagc
    22921 accagaaatt ttctggatac ggcccagttc cacttcttcg atttcaccaa acttgctgaa
    22981 gtccaccttc ggccacggca gcatgcctgg gataccgccg ccagtcgccg ccggagctgc
    23041 ttctgcacgt ttgatagctt ctttcacgta agcctgaacg tcttcgcgca ggatacgacc
    23101 tttacggcca gtgcccttca ctttcgccag gttaacacca aactcgcgtg ccagacggcg
    23161 gatcagcgga gtcgcgtgaa cataagcgtc gttttcagca aattcagatt tgccttccgc
    23221 tttcgcagct ggtgctgctg ccggggcttc agcttttgct gccggtgccg gcgctgccgc
    23281 ttcctgtttc gcaggagctg ccgcaggcgc tgcgccttca acttcgaaga tcataatcag
    23341 cgagccagtt ttcactttat cgccaacgtt gactttcagt tccttcacga cgcctgcaaa
    23401 cggcgccgga acttccatag aagctttgtc gccttctacg gtgatcagtg actgttcagc
    23461 ggcaactttg tcgcccactt tcaccatcac ttcagtcact tcaacttcgt caccgccgat
    23521 atccggaacg ttaacttctt tcacgccagc tgctggtgca ggggccgctg ccggagccgc
    23581 ttcctgttta gccgccggag ctgccgcgcc tgcttcaccc gcgacttcga agaccataat
    23641 cagcgagccg gtagacactt tgtcacccac gttcactttg atctctttca cggtgccagc
    23701 aaacggagcc ggaacttcca tagaagcttt atcgccttct acggtgatca gcgactgttc
    23761 agcttcaact ttatcgccaa ctttcaccag gatttcggtc acttcaactt cgtcgctgcc
    23821 gatatccgga acgttaacgt cttttgccgc cgcagccgcg ggtgctgctg ccggagctgc
    23881 ttctttcttc tcttctgcct gagcaggtgc agcgtctgct gcaccgtcgg cggaatcgaa
    23941 aatcataatc agtgcgccgg tctgggtttt atcgccaaca gagactttga tctctttaac
    24001 gatacccgcc tgcggagacg gaacttccat agaggctttg tcgccttcta cggtgatcag
    24061 cgactgttcg gcttcaactt tgtcgcccac tttgaccagg atctcggtga tttcaacttc
    24121 atcagccccg atgtccggta ctttgatttc gatagccatt attcttttac ctcttacgcc
    24181 agacgcgggt taactttatc tgcatcgatg ttgaatttgg cgattgcgtc agcaaccact
    24241 ttcttatcga tttcgccacg tttagccagt tcgcccagcg ccgcaaccac gacataagaa
    24301 gcatcaactt cgaagtggtg acgcaggttc tcacggctgt cggaacgacc gaagccatca
    24361 gtacccagta cgcggtagtc gtcagccggt acgtaagtac ggacctgctc agcgaacagt
    24421 ttcatatagt cggtagatgc cactgccgga gcgtcgttca tcacctgagc gatatacgga
    24481 acgcgcggag tttccagcgg atgaagcatg ttccagcgtt cacaatcctg accatcacgc
    24541 gccagctcgg tgaaggaggt cacgctataa acgtcagaac ctacgccgta atctttcgcc
    24601 aggatctctg ccgcttcacg gacgtgacgc aggatagaac cggagcccag cagctgaact
    24661 ttacctttgc taccttcaat ggtttcgagt ttgtagatac ctttacggat accttcctca
    24721 gcaccttccg gcattgccgg catgtggtag ttttcgttca gcgtggtgat gtagtagtaa
    24781 acgttctctt gtttttcacc gtacatacgc tccagaccgt catgcataat gacagcaact
    24841 tcgtaagcgt aagccgggtc gtaagagata cagttcggaa tagtcagcga ctgaatgtgg
    24901 ctgtgaccat cttcatgctg cagaccttct ccgttcaggg tggtacgacc ggaagtaccg
    24961 ccgatcagga agccacgcgc ttgctggtcg ccagccgccc agcacagatc gccaatacgc
    25021 tggaagccga acatcgagta atagatgtag aacgggatca tcggcagatt gttggtgctg
    25081 taagaggtcg ccgctgccag ccaggaacaa cctgcgccca gctcgttgat cccttcctgc
    25141 agaatctgac ctttctcgtc ttctttatag taagcaacct gctcgcggtc ctgcggggtg
    25201 tactgctgac cgttcgggct gtaaatacca atctgacgga acagaccttc cataccgaaa
    25261 gtacgcgctt cgtcggcgat gatcggtacc agacgatctt tgatcgactt gttcttcagc
    25321 attacgttca gggcacgaac gaaagcgata gtggtagaga tctctttgct ctgctcttcc
    25381 agcagcgcgc cgaagtcttg caggctcggc agctcaagct tctcggtgaa gttcggctga
    25441 cggcttggca gataaccgtg cagtttctga cgctgtgcgt gcagataggt atgctcttca
    25501 gaaccttccg ggaaggtgat gtacggcagt ttttcgatat ctgcatcaga caccggcaca
    25561 ttgaaacggt cgcggatgtg acgcacgccg tccatgttca ttttcttaac ctggtgcgcg
    25621 atgtttttac cttcagccgc gtcgcccatg ccgtaacctt taatggaatg agcaaggatt
    25681 actgtcgctt tgcctttggt ttcctgcgct ttcttgaatg cagcgtagat tttcttcgga
    25741 tcgtgaccac cacggttcag tgcccagatc tgctcgtcag tccagtctgc aaccagtgct
    25801 gcggtttcag gatatttacc gaagaagtgt tcacgaacgt acgcaccatc tttcgatttg
    25861 aaggtctggt agtcgccgtc aacggtttcg ttcatcagct ggatcagttt accgctggta
    25921 tctttacgca gcagttcatc ccaacggcta ccccacatca ctttgatcac gttccagcca
    25981 gcaccttcga agatgccttc cagttcgttg atgatcttgc cgttaccggt gaccgggccg
    26041 tcaagacgct gcaggttaca gttgataacg aagaccaggt tatccagttt ttcacgggta
    26101 gcgatggtga tcgcaccttt ggattccggt tcgtccattt caccgtcgcc gaggaacgcg
    26161 taaacggtct gtttagaggt atctttcagg ccacggtgtt ccagatattt caggaattta
    26221 gcctggtaaa tagcaccaat cggccccagc cccatagata cggtcgggaa ctgccagaat
    26281 tccggcatca gtttcgggtg cggataggaa gagaggccat tgccgtgaac ttcctgacgg
    26341 aagttatcca gctgctcctg agtcagacga ccttccagga aagcacgagc gtacacgccc
    26401 ggggagatgt ggccctggaa gtaaaccagg tcgccgccat cctgctcgtt gcgtgcacgg
    26461 aagaagtggt taaagcacac atcataaatg gttgcggaag actggaagga cgccatatgg
    26521 ccgcccagtt cgaggtcttt tttcgacgca cgcagcaccg tcatgatggc gttccagcgg
    26581 atagctgaac gaatacggcg ttccagttcc agattacccg gatactccgg ttgttcttca
    26641 acggggatgg tgttgatgta gttgctgata cctgtgcctg cggctacgtt tacaccgcct
    26701 ttgcgggctt cagcaagcag ttggtcgatc agatactgag cacgctcaac accttcttca
    26761 cggatgaccg attcgatcgc ctggagccag tcgcgagttt cgatcggatc cacgtcattt
    26821 gggaaacgtt ctgacatggg ttattcctta tctatctaat aacgttgagt tttctggaac
    26881 ctgtcccatt gaactctcgc cggaaagctc aataagacag gttctacgtt tagttgccgc
    26941 gcttttatat gcgcttgatt tacaacatct tctggataat ttttaccagt aaaatcacta
    27001 attctttcgt tgctccagac gacgcagaga acgctcacgg cggctctctt cacgacttct
    27061 gtcgagcaaa atttcttcga taaaggccag atggcgatgc gatgcttcgc gcgcttcttc
    27121 cggcttaccg gccataatcg cttcaaatat gcgggtgcgg tgactactca ccagcggcag
    27181 catctcgcga cgcgaataga gcaattcgaa gttctggcgg acattctggg ccaacatcgg
    27241 ctccatacac cttagcagat gaagcagaac cacattgtgg gccgcttcag tgacagcaat
    27301 ctgatactgg agtacggcgt ttgattccgc gtccagatcg ccagactgct gcgccagttc
    27361 tatggcgtga tggagttcac ggatgcgttc cttgtcttca tcggtactac gcagcgcggc
    27421 gtaataagcg gcgatacctt ccagggcgtg tcgtgtttcg agcaagtcat actgtgactc
    27481 aggatggtcg gagagcagct ccaccagcgg atcgctgaag ctttgccata ggctgctctg
    27541 gacaaaagtg ccgccaccct ggcgacgaag caacaagccc ttcgcttcga gacgttgaat
    27601 cgcctcacgc aaggagggac gggagacgtc aaactgtttt gccagttcgc gttccggtgg
    27661 gagtttttcg cccgggcgga gagtgccttc gaggatcaaa aactccagtt gctgctcaat
    27721 cacatcggag agttttggtt ggcggatttt gctgtaggcc atgagttcct gtcttaagcc
    27781 acttgctgaa gtcaattggt cttaccaatt tcatgtctgt gacgctaaag taacaaagta
    27841 ttcaccttat gtccatacag gttttgattg aaatcatgaa actgtgcaca ttttaacaac
    27901 ttgacatata taacgtttca aagttgtaac tatgcacaaa tgtagacttt acgtaggaaa
    27961 gggatttttt aacgattatt aaactataaa aatccgaatt gaaccgattc acttaccaat
    28021 tttgtgattt ttaattcaat taaaacgaat ttaaattcat tctacatatt gagaggggtt
    28081 gaggctgagc tttacaaacg gtttcttttt aagcaactca tcttcaacca tgcataaagc
    28141 gggtgcattc gctgccgcat accattattc ttgatctgac ggaagtcttt ttgtaacaat
    28201 tcaaacttct ttgatgtaaa caaattaata caacaaacgg aattgcaaac ttacacacgc
    28261 atcactgcgt agatcaaaaa aacaaccacc gcacgaggtt tcatgatgga aggtcaacag
    28321 cacggcgagc agctaaaacg cggccttaaa aaccgccata ttcagcttat cgcgctgggt
    28381 ggcgcgatag ggaccgggtt attcctgggt agcgcctccg taatacagtc cgcagggcca
    28441 gggattatcc tgggttacgc cattgctggt tttatcgcct ttctgatcat gcgtcagctg
    28501 ggtgaaatgg tggtcgaaga acctgtcgca ggctccttta gccactttgc ttataaatac
    28561 tggggcagtt ttgccggttt cgcctctggc tggaactact gggtactgta cgttttagtt
    28621 gccatggctg agctgactgc cgtgggtaaa tacattcagt tctggtatcc ggaaatcccc
    28681 acctgggttt ctgccgccgt attctttgtg gtgattaacg ccatcaacct gaccaacgtt
    28741 aaagtgtttg gcgagatgga gttctggttt gccattatca aagttatcgc tgtggtagcg
    28801 atgatcatct tcggcggctg gctgctattc agtggcaaca gcggcccgca ggcgaccgtt
    28861 agcaacctgt gggatcaggg tggtttcctg ccgcacggct tcaccgggct ggtgatgatg
    28921 atggcaatta tcatgttctc gttcggtggt ctggaactgg tggggatcac cgcagcagaa
    28981 gctgataacc cggagcaaag tataccgaaa gcaactaacc aggttatcta ccgcatcctg
    29041 attttctata ttggttcgtt agccgttctg ctctcactga tgccgtggac ccgcgttacc
    29101 gccgatacca gtccgtttgt gctgatcttc cacgagttag gcgatacctt tgtggcgaat
    29161 gcgctgaaca tcgtggtact gactgcggcg ctctccgtgt acaacagctg cgtatattgc
    29221 aacagccgta tgctgtttgg tctggcacaa cagggtaatg cgccaaaagc gctggcgtct
    29281 gtcgataaac gtggtgtacc agtaaatacc attctggtgt ctgcactggt aacggcgttg
    29341 tgcgtactga ttaactacct tgccccagag tccgctttcg gactgttaat ggcgctggtg
    29401 gtatctgcac tggtaatcaa ctgggcgatg attagcctgg cgcatatgaa attccgtcgc
    29461 gccaagcagg aacaaggcgt ggtaactcgc ttccctgctc tgctttatcc gctgggtaac
    29521 tggatctgcc tgctgtttat ggcggcggta ctggtgatta tgctgatgac cccaggaatg
    29581 gcgatttcgg tatacctgat cccggtatgg ctgatcgtgt taggtatcgg ctatctgttt
    29641 aaagagaaaa ccgccaaagc cgtaaaagcg cattaatctc tctacgccct cacccgtaca
    29701 gggtgagggc aataatcttt acaccaacgc cccgtaaatc gtcagtagtg caatcaccac
    29761 cacgaccacg aacgaggttt tcttcgccat tgaaaccgct gccttcggcg tctccacctt
    29821 atcgacatgc ggttcacgcg ccagagagaa ctgcgccaga cgcgttaaca cctgatactg
    29881 cgaagtatgg aagtcaccca gcgaagcaaa ccaggccggt aacgctttct ccccatgacc
    29941 gatcaaggca tataccacac ccgcaagacg aaccggcacc caatccagta catgaagcac
    30001 ggcatcaatg ccggactgta aacgatgatg cggcgtctgg tatcgcgcca gccagtattg
    30061 ccatgcacgc aaaaacgcat accccatcag cgtaacgggt ccccagattc cccccacaat
    30121 caaccagaac agcggagcaa gataaaaacg aaagttaatc cacagcaatg cattttgcag
    30181 ctcacgcaaa tactcacgtt catcgcagcc tgccgggacg ccgtgaatca tggtgagttc
    30241 gccagccatc gtgacacggg catggctatc attacgtgaa gcagctgtca gataagcatg
    30301 ataatgaaga cgaactttac ctgcgccaat acacagcaaa ccaatcagca gccacaccag
    30361 cagcgtggga acgttgaaca atactccctg caatgcgcgt aacagtaaaa aagtcacgcc
    30421 catcgcaata atggtcatgc ctaacgtgcg cccgagagaa aaatgtttca cccgccgaaa
    30481 gaacgcttca agacgatgat caagctgcca gtgctcgccc aacttaaaca ggcgctcgaa
    30541 aattaacacc agtaaggttg taaatagcgt catgttgtct ccttgctgac cagcgcacga
    30601 aaccgcgccc aatcaaatgc agggccggga tcggttttcc gatccggcgc aatatcacaa
    30661 tggcccgtca tgttattagc gatatctgga tagcgatcaa tcagtgcccg cgtaaccgcc
    30721 gcaagctgtt gatactgcgc atcggtatac gccagcgtat cggtgccttc aagctcaatc
    30781 ccaatagaaa aatcattgca gcgttcgcgc ccctgatact gagagactcc cgcatgccat
    30841 gcacgtttat cgaaaggaac atactggact atttcaccat cacggcgaat caaacagtga
    30901 gcggagacgc gcaaatgggc gatctcagca aagaaaggat gtgcctgcgg atcaatagtt
    30961 ccagtgaata atgcgtcgat ccacggaccg ccaaactcgc ctggcggcag gctaatattg
    31021 tgcaccacca gcagggtggg tgtttcgtca tccgggcggc aatcgtaatg tggtgaggga
    31081 acgcggcgcg cgccaaccag ccacccctgt tctaacaaca tgcaggatct ccttatatgt
    31141 ggtgctaata cccggttcag agtagcatgt ttctacctta tgattcgtta gctatctgga
    31201 gttttaacat gccgcctcgc cgctataacc ctgacacccg acgtgacgag ctgctggaac
    31261 gcattaatct cgatatcccc ggcgcggtgg cccaggcgct gcgggaagat ttaggcggaa
    31321 cagtcgatgc caacaatgac attacggcaa aacttttacc ggaaaactct cgctctcatg
    31381 ccacggtgat cacccgcgag aatggcgtat tttgcggcaa acgctgggtt gaagaggtgt
    31441 ttattcaact ggcaggcgac gatgtcacca taatctggca tgtggatgac ggcgatgtca
    31501 tcaacgccaa tcaacccttg ttcgaacttg aaggcccatc ccgcgtgctg ttaacgggcg
    31561 aacgcactgc gcttaatttt gtgcaaaccc tttcaggagt tgccagtaag gtacgccact
    31621 atgtcgaatt actggaaggc accaacacgc agttgttgga tacgcgcaaa accttacctg
    31681 gcctgcgttc agctctgaaa tacgcggtac tttgcggcgg cggagcgaat caccgtctgg
    31741 ggctttctga tgccttcctg atcaaagaaa atcatattat tgcctccggc tcagtgcgcc
    31801 aggccgtcga aaaagcgtcc tggctgcacc cggatgcgcc agtagaagtc gaagtagaga
    31861 atctggaaga acttgatgaa gccctgaaag caggagccga tatcatcatg ctggataact
    31921 tcgaaacaga acagatgcgc gaagccgtca aacgcaccaa cggcaaggcg ctactggaag
    31981 tgtctggcaa cgtcactgac aaaacactgc gcgaatttgc cgaaacgggc gtggacttta
    32041 tctccgtcgg tgcgctaact aaacacgtac aagcactcga cctttcaatg cgttttcgct
    32101 aattgctgac agatttatcc gctccatcgc gggcggataa tctccccttc cccaactttc
    32161 ttcgtaacgc ctcgcaaatt tcttgtcttt cgctgcaacg aaataaaaaa cctcggaagc
    32221 tgctttcccg tttcgttttt tgcccctcgc ttgtgctgat ggcgtttgcc aaagtagcgc
    32281 caaccaaatc aaggagcgaa acagatggac aagcaacgcg gttttacact tatcgaactg
    32341 atggtggtta ttggcatcat tgccatttta agcgccattg gtattcccgc ttatcaaaac
    32401 tacctgcgca aagctgcact caccgacatg ctacaaacct ttgtgcctta ccgtaccgcc
    32461 gtagagttgt gcgcgctgga acatggtgg
//
LOCUS       DAJVUY010000028        31371 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.028, whole genome shotgun sequence.
ACCESSION   DAJVUY010000028 DAJVUY010000000
VERSION     DAJVUY010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 31371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.028"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(15..3296)
                     /locus_tag="OQQ72_001190"
     CDS             complement(15..3296)
                     /locus_tag="OQQ72_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5107 domain-containing protein"
                     /protein_id="HCS2010994.1"
                     /translation="MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYG
                     VTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPA
                     LVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMT
                     GFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKR
                     AVSAFPIATGTYYKVDYSAGVDISCYKNVPVTTSYMAEKSQYDFVGAWCHDEDGGLLH
                     VANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEE
                     KRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCN
                     ALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQELPLLDVAKA
                     PLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNR
                     ADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGN
                     SKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARV
                     QREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTL
                     AAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESI
                     EECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELA
                     ARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLN
                     LWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDAREPQQASELL
                     HAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEAMRCLRLAATGDRTINIHS
                     YYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLL
                     SLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFI
                     FNYVH"
     gene            3414..4607
                     /locus_tag="OQQ72_001191"
     CDS             3414..4607
                     /locus_tag="OQQ72_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS2010995.1"
                     /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV
                     SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL
                     SPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQT
                     MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG
                     SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK
                     SQPVNTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL
                     YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA
                     QLRQI"
     gene            complement(4671..5924)
                     /gene="glyA"
                     /locus_tag="OQQ72_001192"
     CDS             complement(4671..5924)
                     /gene="glyA"
                     /locus_tag="OQQ72_001192"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS2010996.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            6252..7442
                     /gene="hmpA"
                     /locus_tag="OQQ72_001193"
     CDS             6252..7442
                     /gene="hmpA"
                     /locus_tag="OQQ72_001193"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HCS2010997.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIYYECFGP
                     HKVL"
     gene            complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="OQQ72_001194"
     CDS             complement(7487..7825)
                     /gene="glnB"
                     /locus_tag="OQQ72_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HCS2010998.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="OQQ72_001195"
     CDS             complement(7886..9220)
                     /gene="glrR"
                     /locus_tag="OQQ72_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HCS2010999.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="OQQ72_001196"
     CDS             complement(9210..9923)
                     /gene="qseG"
                     /locus_tag="OQQ72_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HCS2011000.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGCWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="OQQ72_001197"
     CDS             complement(10088..11515)
                     /gene="qseE"
                     /locus_tag="OQQ72_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HCS2011001.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(12073..15960)
                     /gene="purL"
                     /locus_tag="OQQ72_001198"
                     /gene_synonym="purI"
     CDS             complement(12073..15960)
                     /gene="purL"
                     /locus_tag="OQQ72_001198"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCS2011002.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            16220..17776
                     /gene="mltF"
                     /locus_tag="OQQ72_001199"
     CDS             16220..17776
                     /gene="mltF"
                     /locus_tag="OQQ72_001199"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HCS2011003.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="OQQ72_001200"
     CDS             complement(17773..18309)
                     /gene="tadA"
                     /locus_tag="OQQ72_001200"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HCS2011004.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="OQQ72_001201"
     CDS             complement(18334..18969)
                     /gene="yfhb"
                     /locus_tag="OQQ72_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HCS2011005.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDKPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            19178..20026
                     /locus_tag="OQQ72_001202"
     CDS             19178..20026
                     /locus_tag="OQQ72_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS2011006.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            20082..20342
                     /gene="yfhL"
                     /locus_tag="OQQ72_001203"
     CDS             20082..20342
                     /gene="yfhL"
                     /locus_tag="OQQ72_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HCS2011007.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="OQQ72_001204"
     CDS             complement(20536..20616)
                     /gene="shoB"
                     /locus_tag="OQQ72_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HCS2011008.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(21036..21416)
                     /locus_tag="OQQ72_001205"
     CDS             complement(21036..21416)
                     /locus_tag="OQQ72_001205"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HCS2011009.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="OQQ72_001206"
     CDS             complement(21416..22147)
                     /gene="pdxJ"
                     /locus_tag="OQQ72_001206"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HCS2011010.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(22159..22887)
                     /gene="recO"
                     /locus_tag="OQQ72_001207"
     CDS             complement(22159..22887)
                     /gene="recO"
                     /locus_tag="OQQ72_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCS2011011.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(22899..23804)
                     /gene="era"
                     /locus_tag="OQQ72_001208"
     CDS             complement(22899..23804)
                     /gene="era"
                     /locus_tag="OQQ72_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCS2011012.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="OQQ72_001209"
     CDS             complement(23801..24481)
                     /gene="rnc"
                     /locus_tag="OQQ72_001209"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004248457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCS2011013.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="OQQ72_001210"
     CDS             complement(24754..25728)
                     /gene="lepB"
                     /locus_tag="OQQ72_001210"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCS2011014.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="OQQ72_001211"
     CDS             complement(25744..27543)
                     /gene="lepA"
                     /locus_tag="OQQ72_001211"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCS2011015.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="OQQ72_001212"
     CDS             complement(27741..28220)
                     /gene="rseC"
                     /locus_tag="OQQ72_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HCS2011016.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="OQQ72_001213"
     CDS             complement(28217..29173)
                     /gene="rseB"
                     /locus_tag="OQQ72_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HCS2011017.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="OQQ72_001214"
     CDS             complement(29173..29823)
                     /gene="rseA"
                     /locus_tag="OQQ72_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HCS2011018.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="OQQ72_001215"
     CDS             complement(29856..30431)
                     /gene="rpoE"
                     /locus_tag="OQQ72_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HCS2011019.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="OQQ72_001216"
     CDS             complement(30428..30583)
                     /gene="rseD"
                     /locus_tag="OQQ72_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HCS2011020.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            30839..>31371
                     /locus_tag="OQQ72_001217"
     CDS             30839..>31371
                     /locus_tag="OQQ72_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS2011021.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTRR"
BASE COUNT         7502 a         8402 c         7918 g         7549 t
ORIGIN      
        1 acagttaata gggtttagtg aacgtagtta aaaataaaag gcatcacagt ggtgaataat
       61 gccgctttcg gccaggccgg attaatcgcc gtcaattcag cgcgagcaga ctcatattgc
      121 gcaacctccc cgagtcccgc ggacgccagc atcgccacca tcaggcattt ttctttatgc
      181 tgctgttgta aatcgccata cagcgataac aggtcaggtt gtgaaacagc aaagaaatcc
      241 gcctcaatac tggttttcgc catctcttgc gcccactgtt tcatttcact aaacagttgc
      301 tgtgcggttt gctgttcacc cagcagtcgc agcgccattc cttgccagaa gagataatca
      361 accggctgat cgttgtaata actgtggatg ttaatggtgc gatcgccggt cgccgccaga
      421 cgtaaacaac gcatcgcttc agtttcatcg ccctgcgcgt tggcgcatat cgcctgccag
      481 aaccagatgt cgttatcagt ttgccccggt aaacggcctt cgcttaaatt ctccggataa
      541 tgcagcgcgg catgaagcag ttcgctggcc tgctgcggct ctctggcatc aagatgctgc
      601 caggcgcgta ataactggtt gaggataaac tgactggtga ccttcccttc cccgccttcc
      661 cacgggtgga atttacgcgt ggcgagaatg tccgccgctt tgtctgcctg acccgtgaga
      721 tgccacaaat tgagcagttc tgcggtcatg tcgtcgcgtt tcagcgcaat ttccagatta
      781 ttttccagac gcgccagtcg tttctccggt gtggctccac ttaacttatc aagcaaatcc
      841 cgttcgaaaa gcagacgtgc atcctgcggc gcaagctgat aagcattatc aagataacgc
      901 gcggccagct cataatcgtg ttgcttattc cacgcatgga tcgctaaccc gcgccagccg
      961 tcggcaaact ccggcgacat ctctacgcaa cgttgccaaa aggcaatggc tttgttgtag
     1021 ctacgtttgt tgtagtagaa gcaggccagt aaatggcgag caaaccagca ctcttcaata
     1081 ctctccagcg ccgccacttc ttccagcgta ttcgggaaac ggacaaactg cgggaagaca
     1141 tcaatggctt ttgcgaccag ttcgccacgt tcggctttcg gcagcaagct ggcttgcagg
     1201 taaagcggca gcgtgcgctg gcagtccagt gcgttcagca tctctgccgc cagggtgggc
     1261 attccccagt taatcagttg cccggcggtc atcagggcgt taacgtcgcg tccctgacac
     1321 agaccgcgcc actgcgcgag agctgattcg ctacgaccat cgaaccagtt cagccaccac
     1381 agagtggcgt tcagcggata atcgcgcagc agtttctcgc gctgcacacg cgcgttgtcc
     1441 tgacgaccac ttaacaccag cagcagatta tgcaggcaaa gcacttcctg attggttggg
     1501 caggcgcgaa gactttgttg gcaaaaatcc agaccagcgt cgaagttacc attacgcgcc
     1561 gccagtcgtg ccaggccata atagccaccg gctttgctgt tgccgctcca gaccgcacgc
     1621 cagaaatcct cttcggcttg ttgatattgt ccctgacgtt cgtaagcact ggcgcgaatc
     1681 aaactcgcct gtccgcactg cggatttttg ttcagcgcat gtgcgcgttt cagagcctga
     1741 gtggcatacg ccaccgcttg cgggaaatcg gcgcggttat attccagcat cgccagcgcc
     1801 aggttacagc ggtaatccag cggatccagc gccacgccgc gcaggtagta atcgaacggt
     1861 gaacggctgg cgtgatgata ttgctccaga tgctgaccga taaaccaggc ttcatctgta
     1921 ctggtaatgt cttgtgctgc cagtggcgct ttggcgacgt ccagcaacgg caactcttgc
     1981 ggctgatgtt cctgataact cagtacaata ttgccgtcgg catcggagag ctcaatggtc
     2041 agcctttcag gattgatacc gtgcaacacg ccctggatgg cggtcgcagg catcagtgcc
     2101 acggcatcat caagtaacgc gttgcatttg ccgatttcgc ggatcgccag gcggtatccg
     2161 ttcaacggag agatggcata cagcccccac tcaatccccc gcttactacg ctggagtttt
     2221 atcaccgcat cgcgggaggc attttgcacc atgcccaaag aatgataagg caggaaatac
     2281 tgctcaaaac gcttctcttc gtaagcatca agccaggtaa aatcgggctg gttatcggca
     2341 aaaataccgg tcatcagttc gatatacggg ccgttattgt cggtcagact cttatcccac
     2401 gcctggccaa attcactgtg tccccaactc cactgttttt tacctggcgc aatatggtgg
     2461 ttggcaacgt gcagcaaacc gccatcttca tcgtgacacc acgcgccgac aaaatcgtac
     2521 tgcgattttt cggccatata tgaggttgta acaggcacat ttttatagca agaaatgtcc
     2581 actccggcgg agtagtccac tttgtagtaa gtgccggtgg cgatggggaa agcggagacg
     2641 gcccgtttgc cgtgatcaaa caccgcagtc acatccggtg ggaaaacgct ctgatgccct
     2701 tccccccctt tcactgccgg gttggcccac cacaagaaat gacgcggcgt ggcgttaccg
     2761 ttatagacgc ggctggcgat ttccagcgcc gcccggtcag ggcgcagggt gaaacctgtc
     2821 atcacctgta aaccatgcat cggctccgtt tcgcctaccc acaccgtctg tgcaccgtct
     2881 tcatgggctt cgagggtgaa atcaacgggc ataaaggtgg tcgggcgatg atgttgcggc
     2941 cagttaaact caatcccacc ggaaatccac ggccccagca gccccaccag cgcaggttta
     3001 atgacttcat tgtgataaac aaaatcgcgc tgtttcactt tatcccacgc gcgatgcacc
     3061 cgaccgccca gttccggcag gatcatcact ttgatgtagt cgttttccag ccacaccgcc
     3121 tgccaggatt tcagggtttt ctgctcgctc agcgtatcgg tcacgccgta gggataaacc
     3181 gcgccggacg atccctgata aacgcgattt tccaggaaca tgggatgtat atcctgcggc
     3241 ccggtttcat aggtcgggat ctcaacgcgc tcttgccaca cttttactgg agtcatggtg
     3301 ccctcaatat taacaagaca tactgaatta aaagatttgt ggcagtgtat tgaacaatct
     3361 ggcaatgttt tcgcggaata atcacgcaat taactaaaca aggtttagtg aagatgagag
     3421 cctgcattaa caatcaacag attcgccacc ataacaaatg cgtgattctg gaactgctgt
     3481 accggcaaaa gcgcgccaat aaatcaacgc tggcccggct ggcgcaaatt tcgattccgg
     3541 cagtcagtaa tattttgcag gaactggaaa gcgaaaaacg ggtggtgaat attgacgatg
     3601 aaagccagac gcgcgggcat agtagcggta catggctgat tgcgccggaa ggtgactgga
     3661 cgctgtgcct gaacgtgacg cccaccagta ttgagtgtca ggttgctaat gcttgtttaa
     3721 gtccgaaagg tgaatttgag tatttacaga ttgatgcacc gacgccgcag gcgctgctgt
     3781 ccgaaatcga aaaatgctgg catcgccacc gtaaattgtg gccggaccgc accatcaatc
     3841 tggcgctggc aatccacggt caggttgatc cggtgaccgg cgtgtcgcaa accatgccgc
     3901 aagcgccgtg gacaacgccg gttgaggtga agtatctgct ggaagagaag ctgggcattc
     3961 gggtgatggt cgataatgac tgcgtgatgc tggcgctggc ggagaaatgg caaaataatt
     4021 cgcaggaacg ggatttctgc gtgatcaacg ttgattacgg cattggctcg tcgttcgtga
     4081 ttaacgagca aatttatcgc ggcagtttgt atggtagcgg acaaattggt cacaccatcg
     4141 ttaatccgga tggcgtcgtc tgcgactgtg gacgttacgg ctgcctggaa accgtcgcct
     4201 cgttaagtgc attaaaaaaa caggcgcggg tatggctaaa atcacaaccg gttaatactc
     4261 agcttgatcc tgaaaaactg acaaccgcgc agttaatcgc tgcctggcag agtggagaac
     4321 cgtggatcac cagctgggtt gatcgctctg ccaatgccat tggtttgagt ctgtataact
     4381 tcctcaacat cctcaatatt aatcagattt ggttgtacgg tcgcagttgt gcctttggtg
     4441 agaactggct taatactatt attcgccaga caggatttaa cccgttcgac cgcgacgaag
     4501 gaccgagcgt gaaagcgacg caaattggct tcgggcaatt aagccgcgca caacaggtgc
     4561 tgggaattgg ctatttgtat gttgaggcgc agttacgaca gatttgatgg cgcgataacg
     4621 tagaaaggct tcccgaagga agcctttttt caacagatta accgtttcgc ttatgcgtaa
     4681 accgggtaac gtgcgcagat gtcgagaact ttacctttga tgcgctcgat aacggcttca
     4741 tcattgatgc tgtccagcac gtcacacatc cagccagcca gttctttcgc ttctgcttct
     4801 ttgaagccgc gacgcgtaat tgccggagta cccacgcgaa taccggaggt cacaaacggg
     4861 ctcttcggat cgttcggtac gctgtttttg ttgacggtga tgttagcacg gcccagagcg
     4921 gcgtctgctt ctttaccggt caggttttta tcaaccagat caaccaggaa caggtggtta
     4981 tcagtgccgc cggaaaccac tttgtagccg cgctcgagga acacttctac catcgcttta
     5041 gcgtttttcg cgacctgctg ctggtaagtt ttgaactcag gctccatcgc ttctttcaga
     5101 gcaaccgctt taccggcgat tacgtgcatc aacggaccgc cctgaccacc agggaaaacg
     5161 gcagagttca gttttttgta cagctcttcg ctaccacctt tcgccaggat caggccgccg
     5221 cgcggacccg ccagggtttt gtgagtggtg gtagtaacaa cgtgagcatg aggaaccggg
     5281 ttcgggtaga cgccagcagc aaccaggccc gcaacgtgcg ccatatcaac gaacaggtaa
     5341 gcaccgatgc tgtcagcgat ttcacgcatt ttcgcccagt ccaccacgcc ggaatatgca
     5401 gagaaaccac cgataatcat tttcggcttg tgttctttgg cttgtttttc cagatcggcg
     5461 tagtcgatat gaccggtagc atcgataccg taaggaacga tgttgtacag tttaccggag
     5521 aagttaaccg gagaaccgtg agtcaggtga ccgccatgcg ccaggttcat acccagaacg
     5581 gtatcacctg gttccagcag cgcggtgtag accgcaaagt tagcctggga gccggagtgc
     5641 ggctggacgt tagcgtagtc agcgccgaac agttctttcg cacgatcgat cgccagttgt
     5701 tcaacgatat caacatactc gcaaccgccg tagtagcgtt tgcccggata accttcagca
     5761 tatttgttgg tcagctgaga accctgcgcc tgcattacgc gcgggctggt gtagttttcg
     5821 gaggcgatca gttcgatgtg ctcttcctga cgtacttttt cctgctccat agcctgccac
     5881 agttcggcat cataatcggc aatgttcatt tcacgcttta acatccgcat ctcctgactc
     5941 agctaacaat aaaatttttg gcctttatag gcggtcctgt tggacaacgg cgaacagtat
     6001 aaccgaatca ttgtgcgata acaggtcttg acaaaggaat ttacgcaaac gattaccttc
     6061 aggctacgca aggctttgga gaataaagag cttgcaaccg gaaacggatt tcttttcagg
     6121 tttgtgatgc aaatttttca cttcatcaca ttctttctga aaaacaccaa agaaccattt
     6181 acattgcagg gctatttttt ataagatgca tttgaaatac atcaattaag atgcaaaaaa
     6241 aggaagacca tatgcttgac gctcaaacca tcgctacagt aaaagccacc atccctttac
     6301 tggtggaaac ggggccaaag ttaaccgccc atttctacga ccgtatgttt actcataacc
     6361 cagaactcaa agaaattttt aacatgagta accagcgtaa tggcgatcaa cgtgaagccc
     6421 tgtttaacgc tattgccgcc tacgccagta atattgaaaa cctgcctgcg ctgctgccag
     6481 cggtagaaaa aatcgcgcag aagcacacca gcttccagat caaaccggaa cagtacaaca
     6541 tcgtcggtga acacctgttg gcaacgctgg acgaaatgtt cagcccgggg caggaagtgc
     6601 tggacgcgtg gggtaaagcc tatggtgtac tggctaatgt atttatcaat cgcgaggcgg
     6661 aaatctataa cgaaaacgcc agcaaagccg gtggttggga aggtactcgc gatttccgca
     6721 ttgtggctaa aacaccgcgc agcgcgctta tcaccagctt cgaactggag ccggtcgacg
     6781 gtggcgcagt ggcagaatac cgtccggggc aatatctcgg cgtctggctg aagccggaag
     6841 gtttcccgca tcaggaaatt cgtcagtact ctttgactcg caaaccggat ggcaaaggct
     6901 atcgtattgc ggtgaaacgc gaagagggtg ggcaggtatc caactggttg cacaatcacg
     6961 ccaatgttgg cgatgtcgtg aaactggtcg ctccggcagg tgatttcttt atggctgtcg
     7021 cagatgacac accagtgacg ttaatctctt ccggtgttgg tcaaacgcca atgctggcaa
     7081 tgctcgacac gctggcaaaa gcaggccaca cagcacaagt gaactggttc catgcggcag
     7141 aaaatggcga tgttcacgcc tttgccgatg aagttaagga actggggcag tcactgccgc
     7201 gctttaccgc gcacacctgg tatcgtcagc cgagcgaagc cgatcgcgct aaaggtcagt
     7261 ttgatagcga aggtctgatg gatttgagca aactggaagg tgcgttcagc gatccgacaa
     7321 tgcagttcta tctctgcggc ccggttggct tcatgcagtt taccgcgaaa cagttagtgg
     7381 atctgggcgt gaagcaggaa aacatttatt acgaatgctt tggcccgcat aaggtgctgt
     7441 aatttgatgt tgccggatgg aaacatccgg caacccttga cgcggtttaa attgccgcgt
     7501 cgtcctcttc accggtacgg atgcgaatga cccgtgccac gtcaaagacg aagattttac
     7561 cgtcaccgat tttgccggtt tgcgccgtgc gaataatggt atcgacacag gtatcgacaa
     7621 tgtcgtccgg tacgacaatc tcaattttca ctttcggcag aaaatccacc atatactccg
     7681 cgccgcggta cagctcggta tggcctttct ggcgaccaaa gcctttcact tcggtcaccg
     7741 tcatgccggt aataccgact tcggccagtg cttcgcggac atcgtccagc ttgaagggtt
     7801 ttataatcgc atcaatcttt ttcatgctat tccttgaaaa ggtcgcctgt cttttgatct
     7861 gctaaacgta acacataacg ccaattcatt ccttgaaatc gtttgcatcc agctcgtgtc
     7921 gggaaagcag tttataaaat tctgtccggt tgcgccccgc cattctcgcc gcgtgggtga
     7981 cgttgccttt ggtaatttgc agcagcttac gcaaatagtt gagttcaaac tgattacgtg
     8041 cctcaacaaa ggttggcagc gccgtgtttt caccctccag cgcctgctct actaatgcat
     8101 cgctaataac cggagatgag gtcagcgcca cgcactgttc aatcacgttg accaactggc
     8161 gcacattacc cggccagcta gcggtcatca ggcgtttcat cgcatcagtg gagaacgcgc
     8221 ggacaaacgg tttatgtcgc tctgccgcct ggcgcaacag gtgatttgcc agaagcggaa
     8281 tgtcttctgt gcgctctgcc agagccggaa ttttcaggct gacaacgttg aggcggtaat
     8341 agagatcttc gcggaattcc ccgcgcgcca tcgcttttgg cagatcacgg tgagtggcag
     8401 aaataatccg cacattgata tcaatatcgc ggttactgcc cagcgggcgc actttacgct
     8461 cctgcaacac gcgcagcagt ttgacctgta acggcgcagg catatcgcca atttcatcga
     8521 gaaatagcgt tccgccttcc gccgcctgga ataaaccttc gcgattgctg acagcgccag
     8581 taaacgcgcc acgcgcatga ccaaacagct ccgactccag caattgctcg ggcaatgcgc
     8641 cacagttaat agcaataaat ggtttgctgt tgcgcgggct ggcgttgtgg atagcctggg
     8701 cgaaaatctc tttcccggtg ccgctctgac cgttaatcaa aacgctgacg tctgattgcg
     8761 ccaccagccg cgcctgttcc agcaaacgca gcatcagcgg gctgcgggtg acaattgcct
     8821 cgcgccagcg ttcatcggtg gctggcgcgg attgctccag cgcatcgtca attgcctgat
     8881 atagcgcgtc tttgtcgaca ggcttggtga ggaaactaaa aacgccctgc tgtgttgcag
     8941 caacggcatc ggggatagaa ccatgcgcag taagaataat tactggcatt cccggctgca
     9001 ctttctggat ttcagcaaat agctgcatac cgtccatttc atccatccgc aggtcgctga
     9061 taactaaatc tactttttcg cgattcagta cccgtaatcc ttcagcgcca ctttccgccg
     9121 tgaccacact gtagccttcg ctggtcaggc gcaggccaag cagtttcagc aatcccggat
     9181 cgtcatcgac caataataaa tgcgcaggtt tatggctcat caggagtgac ctcatgggtg
     9241 gatggcgcgg gcttttcact ctcgtgcggc gtatccggcg agaaatttcc agccggtttg
     9301 cgggtcgaga gctggcgttc aatatcggtc aggttttcca gcttgcgggt ggtgagttcc
     9361 agttgctgct gtagaacgtg atgttgctgg cgcaatgtat ccagctcgct gtcgctggac
     9421 tgctggagtt tactgtaacg ttggcgctct tccgccagtt gcagttgcag cgcctgaccg
     9481 tcgcgccaga gttgatacag tgggcgaacc tgtgccggga tctcggtact taacgcttca
     9541 atacgcgcga ccagctggcg gcgctcatac ggcgtaattt tggcgtcggc gagcaaaatc
     9601 ccttgtttaa aggtattttg ccagcagccg tcgtcatatt ggcgagcttg ctgacgcgac
     9661 tgcgcaggca ttaaacgatc agcacaatcc atcgcccgca gccagtaaag cggattggtt
     9721 tcggttgatt taccttgcag cgcccagatg tcgctacatt cagtagaaag atagtcagcc
     9781 agttgataaa ccggaatttt ttcttctgct ggcgtatcaa tggctggctt attgtgattc
     9841 tgcacgcaac ccagcaatgc cagacatggc agccctgcca gccacagccg tcggggcaat
     9901 aatcgttgaa aaatgtgtcg catattcacc agacttaaag cctatcccag tgggcgtaat
     9961 tgttgcagac agtctggaca tggacagcgc ggagaaaccg gagcgtacat atcgtacgtg
    10021 aagatttcga gcactgcccg gagccgaact gacaaataaa atagcctgat aggataggct
    10081 gttagcatta tttcgtgttt ttcgacgacg gtaattcaat gcggaaacaa acgtcttgcc
    10141 cgctctcgtc gaccagatac agttcccctt gcatacggcg aatacaatcc ctggcaatgc
    10201 ttaatcccag accgctgccc ttcaccgccc cttttcgctg gtggcttccc tgaaaaaagg
    10261 gttcgaagat catggcgcgt tcctcttgcg gaatgggcgt gcctgtattg atgacatcaa
    10321 tataaacccg cgcaccatgt gaactgctgc gaaggcaaat gttaccggat tcagccccgt
    10381 agtgcaccgc attggagtaa agattatcca gtacgctcat cagcagcatt ggctccgcca
    10441 ggcaagctgt tgctttgaga tcgacgtcgg tatgcatcat tttagcccgt gcgggcaggc
    10501 tatgagcaga aaccactgtc tccaccagcg gtgctaattc aacattctcc agttccaccg
    10561 cactgtccgc ctgtttacgg ttgtaatcaa gcagttgttc gatcagtttt tgcaaattgc
    10621 ggctgctgct atcaagaatg ctcaccacct ctttttgctc tggcgtaagc ggcccgacaa
    10681 cctggtcagc cagtaattca gtgccctcgc gcatactcgc cagtggcgtt tttaattcat
    10741 gagataaatg tcttaaaaat tgatggcgtt gggattccag ccatgacagg cgctcactta
    10801 accaaagaat acgttgccca accgagcgta actcgctcgg tccactgaac gaaacgctat
    10861 tgcccagaga acgcccttcc cccagacggt tgatcatgcg ctcgatattt ttcaccggcc
    10921 cgataatcat ccgcgtgaaa agtagcacca tcaccagact caccagaaat agcaccagcg
    10981 attgccaacc aaaatattgc ccacgttcgg cgatttcacg ctgaagttgc tgcccacgag
    11041 agaacaccac tgtgcgcgtg gcctgcacca tttcggtatt ggcactggca aaggcttcaa
    11101 gacgcgcggc ggcggcagca tcgggaccac tgttgttaca ctgaagttgg gccagattgt
    11161 tcaaatcctg acgcaatgcc tggtaaagtt tatcgtctgg cagtacgcct gcgtgggcat
    11221 cgagcatttc gctgtaacgc ttgcgctggc tttgataaac cttcgcaagc gtagggtcgt
    11281 ccagcacgca atactgacgg tagctacgct ccatctccag cgccgcgttg gtcatcgctt
    11341 cactacgccg ggcatcaata agcgtagtgc ggttaaccag cgccgcctga tcgctaagcg
    11401 cattcaggct ttgccaggct tgccatgcca gcaccaacag gggtagtaga attagcaaaa
    11461 atgccagcat taccagttgt cgtaatgagc ggggaaaaac gggccagcgt ttcaaggtgt
    11521 tactctcgtc agacgcgaat agcctgatgc taaccgaggg gaagttcaga tacaacaaag
    11581 ccgggaatta cccggctttg ttatggaata aggcggtgcc taactcgacg tttcgcccga
    11641 tggttgatat agctacgctg atatcagaag ttggacggca ggcaccttgt tgtgcgtcat
    11701 tcgaatttta tgtagcacgt cccgaagggg ctgacataag tcggtgaatg agccactgct
    11761 tactattatg cagtaactgt gccaataaag aaaatagttt ggtaacgtac tgattatacg
    11821 ttgctttgag ggatttatgg cttcttcgct atttgaatgt aaatcagcca ctgtgtcgct
    11881 aaaaagagac agcttaagat aaacttatta gattacaata aaatcaatca cttaagtgtc
    11941 gccagaaagc gacacggtaa accacccatt gtcgtgattt acagacacaa aaaagctccc
    12001 ggagttggga gcttatgata gtggttggtg cttaatgccg catccgggct gcaaaaccaa
    12061 tgaactgatg aattacccca actgcttacg cgcattgcgg aaaatgcgca tccatgggcc
    12121 atcctcgccc cagttttccg gatgccagga gttgctgaca gtacggaaaa cacgttccgg
    12181 gtgcggcatc ataatggtga ctcgaccact ttcagtcgtg actgccgtaa taccgttcgg
    12241 tgaaccgttc gggttagccg ggtaggtttc agtgactttg ccgaagttat cgacatagcg
    12301 cagtgccacc agccctttgc tttccagtgc cgccagatgc gccgcatcac gcacttccac
    12361 gcgcccttca ccatgagaga cagcaatcgg catttgcgag cccaccatcc cctgcaacaa
    12421 cagagacggg ctttgggtta cttcaaccag gctgaaacgc gcttcaaagc gatcggaggt
    12481 attgcgcaca aaacgtggcc acaactcact acctgggatc agttcgcgca ggttagacat
    12541 catctggcaa ccgttacata cccccagcgc cagcgtttgc ggacggtgga agaaggttgc
    12601 aaactcatcg cgtacacggt cattgaacag gattgacttc gcccaacctt caccggcacc
    12661 cagcacatca ccgtaggaga aaccaccgca cgcgaccagg gcgtggaaat cttccaggcc
    12721 cgtgcgtccg gtcagcaggt cactcatatg cacgtcgata gcatcaaagc ctgcacggtg
    12781 gaaagctgcc gccatttcaa catgcgagtt cacgccctgc tcacgcagta cggcaacttt
    12841 cggacgtgcg ccagtggcaa tatacggtgc tgccacatct tcgttgatat cgaacgacag
    12901 ttttacattc aggcccggat cggcgtcgtt agatttcgcc tgatgctcct gatcggcaca
    12961 ctccgggttg tcacgcaggc gctgcatctg ccaggtagtt tctgcccacc agacacgcaa
    13021 cgtggtgcgg ctttcgctga atacagtctg cccgttggcg gtaatcacaa aacggtcacc
    13081 ggaaaccgcc tgccctacat aatggacaca atcagcaagc ccatgctgtg ccagtacgga
    13141 ctcgaccgct tcacggtcag cggcacgaac ctgaatcacc gcacccagtt cttcgttaaa
    13201 caacgccgcc aggcgatcgt cgcccagaga ggcaatatcc gcgttaatgc cgcaatgacc
    13261 agcaaaggcc atttccgcca gcgttaccag caggccgcca tcagagcggt cgtggtatgc
    13321 gagcagctta cgctgtgcaa ccagcgcctg aatcgcgtca tagaagcctt tcagttgcgc
    13381 gacgtcgcgt acatctgccg gtttgtcgcc aagctgacga taaacctgcg ccagcgccgt
    13441 tgcgcccagc gcgttattgc ctttgcccaa atcaatcagc aatagtgcgt tatcttcggt
    13501 agaaagctgt ggcgtgatgg tgtgacgcac atcttccacg cgggcaaatg cagaaatcac
    13561 cagcgacagc ggcgacgtca tttcgcgctc ttcgttacct tcctgccagc gggttttcat
    13621 cgacatagag tctttaccca ccgggatcgt caggcccagc gccggacaaa gctcttcgcc
    13681 cacggcttta acggcttcat acaggcccgc atcttcacca gggtggcctg ccgccgccat
    13741 ccagttggcg gaaagtttaa tgcgtttgat atcgccaatc tgtgttgcgg caatattggt
    13801 taacgcttca ccgaccgcca gacgggcaga ggcggcgaaa tccagcagcg caaccggcgc
    13861 acgctcgcca atcgccatcg cttcaccgta gtagctgtcg aggctggcgg tagtgaccgc
    13921 gcagttagcg accggcacct gccacggacc caccatctga tcgcgcgcta ccatgccagt
    13981 tacgctgcgg tcaccgatgg tcaccaggaa agttttctcc gccacggtcg gcagatgcag
    14041 tatgcgtttc accgcgtctg caatggtgat cccttcacgg accagcgcat cgcccttcgc
    14101 tttcagcgtt tgtacatcgc gggtcatctt cggcgtttta ccaagcagga cgtccagcgg
    14161 cagatcgatc ggctgattat caaaatgacg atcgtgtaga gaaagatgca gttcttcggt
    14221 cgcttcacca atcaccgcgt agggtgcgcg ctcacgctta cacagttcgt caaacagcgg
    14281 taattgatcg gcagcaaccg ccagcacgta gcgttcctgg gattcgttac accagatttc
    14341 cagcgggctc atgcctggct cgtcgctcag aatgtcgcgc agttcaaatt taccgccacg
    14401 cccgccgtcg ctcaccagtt ccggcatagc gttagaaaga ccgcctgcgc caacgtcgtg
    14461 gataaacagt attgggttgg catcaccaag ctgccagcaa cggtcaatca cttcctggca
    14521 gcgacgctcc atctccgggt tgtcgcgctg tacggaagca aagtcgaggt cggcatcaga
    14581 ctgaccagac gccatggaag acgccgcgcc gccgccaaga ccgatgttca ttgccgggcc
    14641 gccgagaacg accagcttcg cgccaacgtt gatctcgcct ttttgtacgt gatcggcgcg
    14701 aatgttgccg atcccgcccg ccagcatgat cggtttgtga taaccgcgca gctcttcgcc
    14761 gttgtggctg ttcacttttt cttcataagt acggaagtag ccgttcagtg ccggacgacc
    14821 aaattcgttg ttaaacgccg caccgcccag cgggccttcg gtcatgatgt ccagcgcggt
    14881 gacaatgcgc tcaggcttac cgaaatcttc ttcccacggc tgttcgaagc caagaattcg
    14941 caggttggaa acggagaaac caaccaaacc cgctttcggc ttcgcgccgc gcccggtggc
    15001 accttcatcg cggatttcac cgccggaacc ggtcgccgcg cccggccacg gagaaatcgc
    15061 cgtcgggtgg ttgtgagttt cgactttcat cagaatatgc gccggttcct gatggaaatc
    15121 atagcggccc gtttcgtggt cagcaaagta gcggcccact tcagaacctt ccattacggc
    15181 ggcgttatct ttataagcag agagaacgtg atctggcgtg gtttcgaaag tatttttgat
    15241 catcctgaac agcgatttcg gctgttgttc accgtcgata atccagtcgg cgttaaaaat
    15301 tttgtggcgg cagtgctcag agttcgcctg agcgaacata tacagctcga tgtcgttcgg
    15361 gttacgacca agctttgtga aagcatcctg cagatagtca atttcatctt ccgccagagc
    15421 caggccaaga cgcaggttag cgtcgatcag cgcctgacgg ccctgcccca gcaaatcaac
    15481 gcttgtgacc ggagtcggtt gatggtgggc aaacaactgc tctgcatcat ctaaatcaaa
    15541 aaagacagtt tccatcatgc ggtcgtgcag ttcagcggta acctgctgcc attgttcatt
    15601 ggtcagcgta ccggcttcta tatagtaagc aacgccgcgc tcaaggcggt ttacctgttg
    15661 tagcccgcag ttatgggcaa tatcggtcgc tttcgaagac cagggagaga tggtgccagg
    15721 acgcggggtc accagcagga gtttgccttg cggggcgtgg ctggcgagtg ccggaccata
    15781 tttcagcagg cgttcaagtt gtgcgtgctc atcatcgttt aacggcgcat tgaggtcagc
    15841 aaaatggaca tactcggcgt aaatattgtg aaccgggagc ctggcagcct gaaaacgtgc
    15901 cagcagtttg ttgattcgga atgccgacag tgcaggcgaa ccacgcagaa tttccatcat
    15961 aagtctctcg tcttctaagc tttcggtgta cccaaggggg ggggaaacgg gcgtcattat
    16021 aaagaatctg atgcgctgac gaaaccgttt gcgtggaaat aaaatcacca tcgtgaatta
    16081 gcaacgcgtg ccgccaatgg ctgtaataag ttgccatctg gcgcaggttt acgcaaaatg
    16141 ccgctcattt atgagtaaac ctttcactat tattacgttt tttcaagctg ggacgcgcac
    16201 gacacagaga attaactaat tgaaaaaatt aaagattaat tatctgttca tcggcattct
    16261 ggcactgctg ctcgcggtcg ctctctggcc atccattccc tggtttggta aagccgacaa
    16321 ccgtatcgcc gccattcaag cgcggggaga gttgcgtgtg agcaccattc atactcccct
    16381 gacttataac gaaatcaacg ggaaaccttt tggcctggat tacgaactgg cgaaacagtt
    16441 tgccgattac ctcggcgtaa aactgaaagt gaccgtgcgg cagaatatca gccagctgtt
    16501 tgacgacctt gataatggta acgccgacct gctggcggca ggactggtct ataacagtga
    16561 gcgggtaaaa aattatcagc ctggccctac ctattattcc gtgtcacaac aactggttta
    16621 taaagtgggt cagtatcgcc cacgtacgct gtgcaacctg acggcggagc aactcaccgt
    16681 tgcaccgggt catgtggtgg ttaacgatct ccagaccctg aaagaaacaa aattcccgga
    16741 attaagctgg aaggtagacg acaaaaaagg ctctgcggaa ttaatggaag atgtcatcga
    16801 aggaaaactc gattacacca ttgctgattc tgtcgccatc agcctgtttc agcgcgttca
    16861 cccggagctc gccgtagcgc tcgatatcac cgatgaacaa ccggtgactt ggtttagccc
    16921 gttagatggc gataataccc tttccgccgc cctgctcgac ttcttcaacg aaatgaatga
    16981 agacggtacg ctggcacgca ttgaagagaa atacctgggg catggcgatg attttgatta
    17041 cgtcgatacg cgcacatttt tacgcgccgt cgatgcggta ctgccgcagt taaagcccct
    17101 gtttgagaaa tacgccgaag aaattgactg gcgtttgctg gccgctattg cttatcagga
    17161 atcgcactgg gatgcacagg ccacttcacc gacgggtgtg cgcggcatga tgatgttaac
    17221 caaaaatacc gcgcaaagcc tcggcattac ggatcgtacc gatgccgaac agagcatcag
    17281 cggtggcgtg cgttatttgc aggatatgat gagtaaagtg ccggaaagtg tgccggagaa
    17341 cgagcggatc tggtttgccc tcgctgcgta caatatgggc tatgcgcata tgctggatgc
    17401 ccgcgccctg acggcaaaaa ccaaagggaa tcctgacagt tgggctgacg taaaacagcg
    17461 tctgccttta cttagccaga aaccctatta cagcaagctg acttacggct acgctcgtgg
    17521 acatgaagcc tacgcttatg tcgaaaatat tcgtaagtat caaattagcc tggtgggtta
    17581 tctgcaagag aaagagaagc aggctacaga agcggcgatg caactggcgc aggattatcc
    17641 ggcggtatcg cctacggagt tgggcaaaga gaaatttcct tttctctcgt ttctttccca
    17701 gtcgtcatca aactatttga cccattctcc ctctctgctg ttttccagga aagggagtga
    17761 agagaaacaa aattaatccg tcgaggattg cgcttttttc tgcgctttaa tttcctggcg
    17821 gcgcatgcga aagaagtcac tgagcaacgc cgcgcactca tccgccagta ttccttccgt
    17881 aatttccact cggtgattca tacccggatg atgcagcaca tccattaaag atcccgcagc
    17941 gccagttttc gcgtcacgcg caccaaagac cacgcgacca atgcgactgt ggatcatcgc
    18001 tccggcacac attacacatg gttcaagcgt gacatacaac gtggcgtcga tcagacgata
    18061 attttgcatc accagaccac cctgccgcag ggccatgatt tctgcatgtg cggtgggatc
    18121 atggcgacca atcgggcggt tccaaccttc gccgattacc cgattgttat gcactaatac
    18181 cgcgccgacc ggcacttccc gctcatccca ggcacgtttc gccagcgtca gcgcgtgacg
    18241 catccagtat tcgtggctaa attcgacttc agacaaaaag aaaactccgg ttataaaagc
    18301 gcggcgcatt atacacggac gctatgcttt actctattcc agttgctgga gttcaccgcg
    18361 cggggttact cgccaacgat gctgacagaa ataaagcagc ggattgtcct gattactgtc
    18421 gctatagcca ctgtacagcc gcagcggagt gccgattttg cgctccagtt gtgcgacctt
    18481 ttcatgtccc agacaacgca tcgtcaatac ccaaccacca tagccacgct gaatttggct
    18541 ggcgataaga ttaacccgcg gcagccaggg cttatcgaaa taaaccgctt caaccagcgg
    18601 ctgcggagag ccggtaatca accagatatc agcatcggaa cttaacaggt aggtggttaa
    18661 tcgctcctga accagcggaa aggcggtaac attgtcgcga aaccagcgca cgaaatcggc
    18721 ctgcaacgtc tgtaaacgtg cttcgctgtg accaaaagtg cacccccaca gaagcagact
    18781 catcggccag cgtgccgcac gaccttttat caataacgca atggctataa tcggtaacaa
    18841 cggcaggaca agtaacgcat tcagcggttg gcgacgtagt aaatagcgca gaaaactgcc
    18901 gaacatatcc tgctgatgca atgttccatc taagtcaaaa aacaccacac gacgctcgtg
    18961 agttgccaaa ccatactcct ctggactgaa acatcctgat taattttcgc tactacatag
    19021 cctaacagat agatcatcac ttttccggca acaatcgacc gcatcatggc taactggaat
    19081 ttttaattca tggcaattag cggcaatgga atataaaatt cactcgcgtg tgtctcatat
    19141 tgcctgttgt cgccactatt tcatcgcgag gaaagatatg aacggcttac ttcgtatccg
    19201 tcagcgttac caggggcttg cccagagtga taaaaaactg gcggattatc tgctgctaca
    19261 acctgatacg gcgcgccatt taagctctca gcaactggcc aacgaagccg gagtcagtca
    19321 gtccagcgtc gtgaagttcg cgcaaaaact cggctataaa ggttttccgg cgcttaagtt
    19381 ggcgttgagt gaagcgctgg caagccagcc ggaatcgccc tccgtgccca ttcataacca
    19441 aatccgcggt gatgatccgt tacggctggt cggcgaaaaa ctgattaaag aaaatactgc
    19501 cgctatgtac gcaacgctaa acgttaatag tgaagagaaa ctgcatgaat gcgtaacaat
    19561 gttgcgctct gcgcggcgga taattctgac cggtattggc gcttcgggtc tggtggcgca
    19621 aaactttgcc tggaagctga tgaagattgg cttcaatgct gccgcagtgc gcgatatgca
    19681 tgcgctactc gcaacagtac aggcgtcgtc ccctgacgat ctgttattag ccatttccta
    19741 caccggtgta cgacgcgagt taaacctggc ggcagatgag atgctgcgag tgggcggaaa
    19801 agtgctggcg attaccggct ttactccgaa tgccctgcaa cagcgtgctt ctcattgcct
    19861 gtataccatt gccgaagaac aagcgacaaa cagtgcttca atctctgctt gtcacgctca
    19921 gggaatgtta acggatttgc tgttcattgc gctgattcag caggatctgg aactggcacc
    19981 agaacgtatt cgtcatagtg aagcgctggt gaaaaaactg gtctgagtaa agaatgcgcg
    20041 tataatgccc gcccggtttg tgttgttttg agagtttcct tatggcgttg ttaatcacta
    20101 aaaaatgcat caattgtgat atgtgtgaac ccgaatgccc gaatgaggcg atttcaatgg
    20161 gagatcatat ctacgagatt aacagcgata agtgtaccga atgcgtaggg cactacgaga
    20221 caccaacctg ccagaaggtg tgcccgatcc ccaatactat tgtgaaagat ccggcgcatg
    20281 tcgagacaga agaacagttg tgggataaat ttgtgctgat gcaccacgcg gataaaattt
    20341 aatattctac tctggaagta gagtattaat tatattactg ggaagcctta acgccattat
    20401 atttatttaa ttgatgacat tagcataatc attcactaag ttaatttata tagtatctgc
    20461 caagacactt atttatagtt attaaaggcg cgtccgattg gttcaccgga cgcaccttaa
    20521 gtacgtttcc ttgtgttata agaacagaag gatcagctgt aaaacagcaa tgatgatttt
    20581 gatgacccgt ttaatcaggt atcggcaatc agtcattcgt ttttccttaa acaaggaatg
    20641 cagccgttca gattagccct tacatctccc caaaactgaa cgtgcgagtt attgagggtg
    20701 catgctgcac tccacaccag agctttgacg acaccactcg tttcaatggg ggaattctgt
    20761 ggcatggtgt aaagcacagc aaaatcttca ataacgaagc caattttaat gtacttacga
    20821 attggcggtc acgttaatct ttccatcaat attgctttct tcgtaaaggc tcgagttttt
    20881 atgctaaaga ttgcaagttg cttgtaaaag ataagtacac tgatccataa tcgctgttgt
    20941 tgagggtgca tgctgcacaa aattaaagtt aaaaagtaaa acccccgttc cttaccagtt
    21001 cgggggtttt actttttaaa gagaacggta ttattttaac tttcaataat taccgtggca
    21061 caagcatagt ggcgttcatc tgccagcgtt acatgcatat ttacaacgcc gagcttttcc
    21121 gccagtttta atgcctcacc ccatagccgt agccgtggtt tgccgagctc atcattgaat
    21181 acttcaaatt gattaaacgc cagaccattg cggatcccgg tgccaaacgc ttttgctgcg
    21241 gcttctttca cagcaaaacg cttcgccaga aaacgcaccg gctggtggtg cgttttccag
    21301 attgcccatt cgttatcgct taatacgcgg cgtgccaggc gctcaccgga tcgggcgatc
    21361 actgcttcta tgcgagcgat ctctacgata tccgtgccta aacctaatat tgccattagc
    21421 cacgcgcttc cagcatcaga cgcttcattt ctgccaccgc atctttcagt ccggtcatca
    21481 ctgcacggcc aataatggca tgaccgatat tcagttcatg catctcaggg atggcggcaa
    21541 tggctttcac gttgtgatag gtcagaccgt gtccggcgtt aactttcaga ccgagactag
    21601 cggcaaaggt cgcggctttg gcgatacgca ccagctcttg cgcctgttcg gcgtcagttt
    21661 tggcatcagc atagcaaccg gtgtggatct cgataaacgg tgcgccaacc tctgccgcag
    21721 ctttgatctg ctcttcatcg gcgtcgataa agagagaaac ctgaatcccg gcatctgtca
    21781 gacgtttgca ggcatcgcgc attttttcac gctgccctgc aacgtccagg ccgccttcgg
    21841 ttgttacttc ctgacgcttt tccggtacca ggcagcaaaa atgtggcttc gtctcaacgg
    21901 cgatcgccag catctcttcg gtcactgcca tctccagatt cattcgggta tccagcgtct
    21961 gccgcaggat gcgcacatcg cggtcagtaa tgtggcggcg atcttcacgt aaatgcacgg
    22021 taatgccgtc cgctcccgcc tgctcggcaa taaacgccgc ctgcaccgga tccgggtaag
    22081 cagtaccgcg tgcgttacgc agcgttgcaa tatggtcaat gttgacgcct aacagtaatt
    22141 cagccatgac aatcctcatc attcataatg tgttttcacc gttcgcttag gcataaactg
    22201 ccggaacagt tccctgctct ttaatggttt accgccaaga tacggcttaa gcgccatgcg
    22261 ggtaaagcgt ttcgcggcgc gtagtgtgtc tgcgtcagga aattcccgcg cgtttaacgc
    22321 ttttaactgc cttccggtga acgttttatt gtcgataacg acgcttgcga taaacccttt
    22381 ttcttcgcga taacgatacg tcatggtgtc atctaccggc tcgccgctac ccgcgcaata
    22441 ggtaaaattg acgccatagc ccagatgccc gagcagtgcc agttcaaagc ggcgcagcgc
    22501 gggttctggc gtaccagtgg cacctgcaag agactgaatg cagtgcaaat aatcgaaaaa
    22561 gagttcagag aagcgcgtct cgtattccag tacgcgggag agaagttcgt tgatgtacag
    22621 accgctgtaa agcgtgatac cgcttaatgg cagcgccagc gagacagctt cagcactgcg
    22681 cagcgttttg acttcgccac gcccgccgaa acgtagcaag agaggggtga aaggctgtaa
    22741 tgcacctttc agagtagagc gtttagagcg tgcgcctttg gcaaccagac gcacgcgacc
    22801 cgattcctcc gtgaagacgt ccagcatcag gctggtttcg ctccacgggc gactatgcag
    22861 gacaaatgcg cgctgccagc cttccatcgg agtgactctt aaagatcgtc aacgtaaccg
    22921 agactgcgca gtgcgcgttc gtcgtcggcc caaccggatt tcacttttac ccacagttca
    22981 aggtggacag gcgcttcgaa catttcctgc atgtctttac gcgcttcaat cccgatggtt
    23041 ttgatcttgg cccctttgtt gccaataacc atcttcttct gcccttcacg ctcaacgaga
    23101 atcaaaccat tgatgtcata accaccgcgt tcgttagaga cgaaacgttc gatctccacg
    23161 gtcacggagt acggcagttc agcgccgagg aaacgcatca gtttttcgcg gatgatttca
    23221 gacgccataa aacgctgtga gcgatcggtg atgtaatctt ccgggaagtg atgggtcgct
    23281 tcaggcagat gcttacgcac gattgctgcg atagtgtcga cattcagccc ggtttcagca
    23341 gagatcggca cgatatcgag gaagttcatc tgacttgcca ggaactgtaa gtgcggcagc
    23401 agatcggctt tttcctgcac gttatccact ttgttcaccg cgaggatcac cggcgctttg
    23461 ccatcgcgca gtttgttgag caccatttcg tcgtccggcg tccagcgggt gccttcaacg
    23521 acaaaaatca ccagctcaac gtcgccaata gagctgctcg ccgctttgtt catcaggcgg
    23581 ttaatagcgc gtttttcttc catatgcagg ccaggggtat caacgtagat cgcctgatac
    23641 gcgccttcag tatggatccc cacaatgcgg tgacgagttg tttgcgcttt gcgggaggtg
    23701 atggagatct tctgccccag cagtttgttc aacaatgtgg atttgccaac gttcggacgt
    23761 ccgacgatgg caataaatcc gcagtaactt ttatcgatgc tcattccagc tccagttttt
    23821 tcaacgcctg ttcggcggca gcctgctcag ccttacgacg gcttgaacct gtgccaacca
    23881 ccggttcact caggccgctg acctggcagt ggatagtaaa ttcctgatcg tgcgcttcgc
    23941 cacgtacctg gactaccaga taagtcggca gcggcagatg gcgaccctgc aaatattctt
    24001 gcaagcgcgt tttcggatct ttttgtttat cgcctgggct aatttcgtcc aaacgagttt
    24061 gataccagtt gaggattaat ttctcgacgg tttgaatatc actgtcgagg aatacgccac
    24121 caattaatgc ttcgacggta tcggcgagaa ttgactcacg acgaaatcca ccgcttttaa
    24181 gttcaccagg ccctaaacgt aagcactcgc ctaactcaaa ttcgcgcgcc agttccgcca
    24241 gcgtattgcc acggaccagc gtggcgcgca tccggctcat atcgccttca tccacacgag
    24301 ggaaacggtg ataaagcgca ttggcgataa cgtagctcag aatagagtcg cctaaaaatt
    24361 ctaaacgctc gttatgtttg ctgctggcac tacgatgagt taatgcctgc tgcaacagtt
    24421 cctgatgatt aaaagtgtag cccagcttcc gttgaagccg attaattacg atggggttca
    24481 tgcgatacca ataaataaat gcgtcaacaa ttcagcacac gaaacagacc tgatatacat
    24541 ggctctgcta actgcttcgc tgcagtttca gtttaccggt atatggggac caacgctgtt
    24601 tcgtgtgccg tggcaacctg gaggtgccaa ccttaaactt cgggggaata ttctatacac
    24661 aacgacgggg gatgtcgtta gccacgggag atttatctca taaataattc acgttgtcgc
    24721 cataacggcg acaacgtgaa cgaagatggg ctattaatgg atgccgccaa tgcgacttaa
    24781 gcgcacacct gtcggccatt cgccttcttg cttatcgaaa ctcatccaga tagccgttgc
    24841 ccgaccgacc agattcgctt caggcacaaa accccagtaa cggctgtccg cgctgttgtc
    24901 gcggttgtcg cccatcatga agtattgtcc cggcggaaca atccaggttg ccagttgttg
    24961 ccctggctgt tggtaataca tccccacctg gtcctgcgca atcggcactg tcagaattcg
    25021 gtgcgtcaca tcacccaatg tctctttacg ctcggaaaga cgaattccat tttctttggt
    25081 ttcgtttttc ggcacttcaa agaatccgct ggtcgcttcc ccaccattac ggcgtgagaa
    25141 ggtctgaacg aaatcgctcg gttccacgtt ggagtaggtg accggtagcg cgttttcaca
    25201 cgcctggccg gaactgcatc ccggttgaat cgtcagctct tttgagaccg gatcgtaagt
    25261 gactttatcg cccggtaaac ccaccgcgcg cttgatgtaa tcaagctttg gatcttccgg
    25321 atatttaaag accacgatat cgccgcgttt cggatgaccg gtttcgatca gcgttttctg
    25381 gtagatagga tctttaatgc cataagcaaa cttctctacc agaataaaat caccgattaa
    25441 cagagtcggc atcatcgaac ctgacgggat ctggaacggt tcataaataa acgaacgtac
    25501 aatcaatacg atagccagca ccggaaaaac agaagcaccg gtttccagcc agccaggctt
    25561 cggcgcaacc tttttcaggg ttgctttatc cagtgagtca ccggcagccg cctgcgccgc
    25621 tgcctgacgt tcccgccgtt taggtgcgaa aaagaattta tccacgcacc ataaaatgcc
    25681 cgtcaccagt gtggcaatca ccagaatcag ggcaaacata ttcgccatgc caactcctaa
    25741 gggttatttg ttgtctttgc cgacgtgcag aatggcgagg aacgcttcct gcggcagctc
    25801 gacgttaccg atctgcttca tgcgtttctt accttctttc tgcttctgca gcagcttttt
    25861 cttacggctg atatcgccgc cataacattt agccagtacg tttttacgca gctgtttcac
    25921 ggtggatcgc gcaataatgt gcgtaccaat cgctgcctga atggcgatat caaactgctg
    25981 gcgtgggatc agatctttca tcttctccac caactcgcga ccgcggtttt gcgaattatc
    26041 acggtgggtg atcagcgcca acgcatcaac acgttcaccg ttgattaata cgtctacacg
    26101 taccatgtcg gacgcctgga agcgtttgaa gttgtaatcc agagacgcat aaccacgcga
    26161 ggtagatttc aggcgatcga agaagtcgag caccacttcc gccatcggga tctcgtacgt
    26221 cagcgccacc tgattaccgt ggtaaaccat attggtctgc acgccgcgtt tttctacgca
    26281 cagcgtaata acgttgccga gatatgcctg cggcagcagc atgtgacact ctgcaatcgg
    26341 ctcgcgcagt tcgtaaatgt tatttaccgc aggcagcttg gatgggctgt cgacgtagat
    26401 aacttccctt gacgtggttt caacttcata cactacggtc ggcgcagtgg tgatcagatc
    26461 cagatcgtat tcacgttcca gacgttcctg gatgatctcc atgtgcagca ggccaaggaa
    26521 gccgcagcgg aaaccaaagc ccagcgcgct ggagctttcc ggctcataga acagtgaggc
    26581 atcattcagg ctgagtttac ccagcgcgtc acggaaggct tcatagtcgt cggaacttac
    26641 cgggaacaga ccggcgtata cctgcggttt gactttctta aagccaggca gcgccttttc
    26701 tgccggatta cgcgccagcg ttaaggtatc gccgactgga gcgccgtgga tatctttaat
    26761 cgcacatacc agccagccta cttcgccaca tttcagttca gtgcggtcaa cctgtttcgg
    26821 cgtgaagatg cccagacggt cggcgttata ggtctgcccg gtactcatga ctttcacttt
    26881 gtcgccctta cgcagggtgc cgtttttaat acggataagt gaaacaacgc ccaggtagtt
    26941 gtcgaaccat gagtcgataa ttagtgcctg caacgggcct tccggatcgc cttccggcgg
    27001 cggaatgtcg cgcaccagac gttcgagaac gtcctgcacg ccaacgccgg ttttcgctga
    27061 acagcgcacc gcgtcagtgg cgtcgatgcc gacgatatct tcaatttctt ccgccacgcg
    27121 ttcaggatcg gctgccggca ggtcaatctt gttcagtact ggcaccactt cgagatccat
    27181 ttccatggcg gtgtagcagt ttgccagggt ttgcgcttcc acgccctgcc cggcgtcgac
    27241 caccagcaat gcaccttcac aggcagccag cgaacgggaa acttcatagg agaagtctac
    27301 gtggcccggg gtgtcgataa agttaagctg ataggtttcg ccgtcagacg ctttgtagtc
    27361 cagcgtcacg ctttgcgctt tgatggtaat gccacgctca cgctcaagat ccatggaatc
    27421 gagaacctgc gcctccattt cacggtcaga caggccaccg cagatctgga taatacggtc
    27481 agacagcgtc gatttaccgt ggtcaatgtg agctatgatc gaaaagttac gtatattctt
    27541 cataaagtat gattattgtg ccttaatgcc cggttaacca ggcttttaga agtcgctgtt
    27601 ctgagcttaa cgtctgtatt aatagaaacg ccgcattcta cactacaaca ttgaggcgag
    27661 gaaatgttca taccgtatgg attgtggtat ctggaaacgt cctcgcattt gttatgcaaa
    27721 atgcaacaaa gccagtgaaa tcactggctc gcgtcttccg aagatgtttc aaatcgcaca
    27781 aggccaggcg gcaatgccac gcttaagatg atcggttgcc attctgcccg ggcagcaaac
    27841 ttacgcgagt agccgcgcgc aatcaggaac ccgccaatac cgccgaggac cgcaccacat
    27901 aatgctgcga cgtcagaagc aaagagtagc tgaaatagcg aagcgatgag gaataatccc
    27961 accagcggcg acatataaac cagtaatgcg gagctaagca ggctgccttc ggcgatcccc
    28021 aattccactt tttgccccgg cactaacggt tcatcacagg gtacgacaat ggtatgcgtg
    28081 gtttgcgggc caagtttatt caacacgcgg ctaccgcaac cggcgcgtga agcgcagctg
    28141 ctgcatgaag ctttaacatc acaactgacc agcgcctgcc cgttttgcca ggagacgacg
    28201 gtagcccact ctttgatcat tgcgctgccc cgaacttaat attctcggca atgcgtttcg
    28261 ccgtttgcgg cggcagttca ccgacaatgg tgatttcggc gttatcacgt acgcttgtac
    28321 tgacggttct gcgtccggtg cgcaacatct gatcggtgct cgatggcgta gcgcggttaa
    28381 cgtttaccga gaagctgaat aatccgtcag aatagagacg tgattcgata ggcatgttgt
    28441 ccatcgtcgg tagcggacgt cgactactgg aaacttcgct aaaaccctgt ggcaaccagg
    28501 ttggcgtcca gctgaattta gctttttcac ctacaggaac agaaagcaac ggcggcaaat
    28561 ttgccttcgc cagcgtctgc atactgctgc tgatatcctg attgacgtta aaagcaatca
    28621 cgcgaaattg ttccagcgtt tcaccatcgc gatcaaggag atcaacccgc atcggtaatt
    28681 tcgattcggt gtccatccac acgatgtagc tgtagcgtgt accatctcgg gcaaccacgc
    28741 gaatgacttc gcaaagacga tcagcaatac gcgtgcgccc gacggagata aagtcgtagt
    28801 aaggagaaag gcgtttgaaa tcggtataga tgagcgatgg cagagaatca acaatgtaat
    28861 cgccattaag cgtgaacggt tcaagtcccg gttcaaaata gctgatttca tcgccgcgct
    28921 gtaccacttc ccggcgcggg ccatccattt gcaacaattg tgcaagagga cggttatcga
    28981 ggcgtgcatg tcgataacgc agagactcaa caccctgttt attgatgctg atgaatgaca
    29041 gctcgtaatt cagtgactga ctggccaggt tcatctgctg taataacgcc ccggacgcgg
    29101 gagtggccga ggcgttagca gagaataaca ggctacctgt cactaatgac atggcaaacc
    29161 aaagttgctt cattactgcg attgcgttcc taaagtttga attcctggca cctgtacagc
    29221 ggcttgctgg gtttgcgcct gctcaaactg aagctgttca gagtggagtc ggcgttgcag
    29281 ttcgtaatcc tgcaacattg cattaatgcg acgacgctgc tcctgtacct gctgctgttg
    29341 accattgttt gcggtcgctt cagaaggtac tcccaggctt accgggctgg ctttacccat
    29401 catcggcagt gtattaaata ccggcgtttc gggctgctgg gacgtttcag attgtccatt
    29461 atagtgctgg acgccaacga taactgcaag cgatacgcat gctgctacgc ccatttgggt
    29521 aagctgtgcc gcccacggac gtactttctg ccagaatggc attttctgcc attgatgcgg
    29581 cgcaggctgg gcttccggga tcaatgtcgc cggttgacgt actggctctt cttcaatggc
    29641 ggccatcacg cgtgaagaga tatcgaaatg gagcacctcg ggagtatcac cccgcattga
    29701 gtcacggatt aagtgatagc tttcccaagt tttctgcatt tctgggttat gagccagttc
    29761 gttaagcagc tcactatcca gcgtttcgcc atccattaaa gcggaaagtt gttctttctg
    29821 catgcctaat acccttatcc agtatcccgc tatcgtcaac gcctgataag cggttgaact
    29881 ttgttatcaa tagcttccct cgctcggaag atacgtgaac gcaccgtacc taccggacaa
    29941 tccatgatag cggctatctc ttcatagctc aggccatcca gctcccgcaa ggttattgcc
    30001 atgcgcaaat cttccgggag ggactcaata gttcggaaaa ctatctgtct cagttcttct
    30061 gacaacatta agttctcagg gttcgaaatt tctttcaacg cgccgccact ttcgaagttt
    30121 tcagcttcaa tggcatccac atcactggaa ggtggacgac gcccctgagc aaccaggtaa
    30181 tttttcgctg tatttacagc aatccgatac agccatgtat aaaaagcgct atctccccgg
    30241 aacgaatcca gcgcacgata ggctttaata aaagcttctt gtaccacatc gggaacatca
    30301 cccgacggca catagcggga aaccagactc gccactttat gctgatagcg cactaccagt
    30361 aagttaaagg ctttctgatc tcccttctgg acccgttcaa ccaggacctg gtccgttaac
    30421 tgctcgctca tccgaggtaa agtctcccca aaccaaattt ccacgcgcta tcgaaacgcc
    30481 actccattag ctgcaatttg agcaagcaaa gggttagagt gtctcgtttt tgtaaagttc
    30541 cgtaacgcat ctgtttttgt ttgtcatgct gtagacggat cattatctat cattataagt
    30601 ctacagaatc tgaacatcgc attatctgtg tagaaatgcc catttaactg cctgaagagt
    30661 aacccaacgg cctttttatt tcaccaccta atcctccacc agccagtaac ttctcttttt
    30721 ctcgccgccc tgcatcagcg tgtttagcaa ctgtaacaaa tattaaaata gcaggtgttt
    30781 attcgcacaa catgatgcta tgctgaccaa actgtgttta gtaaattaaa caaagaaaat
    30841 gaatactctc cctgaacatt catgtgacgt gttgattatt ggtagcggcg cagccggact
    30901 ttcactggcg ctacgcctgg ctgaccagca tcaggtcatc gttctaagta aaggcccggt
    30961 aacggaaggt tcaacatttt atgcccaggg cggtattgcc gccgtgtttg atgaaactga
    31021 cagcattgac tcgcatgtgg aagacacatt gattgccggg gctggtattt gcgatcgcca
    31081 tgcagttgaa tttgtcgcca gcaatgctcg ttcctgtgtg caatggttaa ttgaccaggg
    31141 ggttttgttt gatacccacg ttcaaccgaa tggcgaagaa agctaccatc tgacccgtga
    31201 aggaggacat agtcaccgtc gtattcttca tgccgccgac gccaccggta gagaagtaca
    31261 atccacgctg gtgagcaagg cgcagaacca tccgaatatt cgtgtgctgg agcgcagcaa
    31321 cgcagttgat ctgattgtct ctgacaaaat tggcctgccg ggcacgcgac g
//
LOCUS       DAJVUY010000029        30935 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.029, whole genome shotgun sequence.
ACCESSION   DAJVUY010000029 DAJVUY010000000
VERSION     DAJVUY010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30935
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.029"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            248..631
                     /gene="secE"
                     /locus_tag="OQQ72_001218"
     CDS             248..631
                     /gene="secE"
                     /locus_tag="OQQ72_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HCS2011022.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            633..1178
                     /gene="nusG"
                     /locus_tag="OQQ72_001219"
     CDS             633..1178
                     /gene="nusG"
                     /locus_tag="OQQ72_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HCS2011023.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ72_001220"
     CDS             1338..1766
                     /gene="rplK"
                     /locus_tag="OQQ72_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HCS2011024.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGAGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ72_001221"
     CDS             1770..2474
                     /gene="rplA"
                     /locus_tag="OQQ72_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HCS2011025.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ72_001222"
     CDS             2887..3384
                     /gene="rplJ"
                     /locus_tag="OQQ72_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HCS2011026.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ72_001223"
     CDS             3451..3816
                     /gene="rplL"
                     /locus_tag="OQQ72_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HCS2011027.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ72_001224"
     CDS             4136..8164
                     /gene="rpoB"
                     /locus_tag="OQQ72_001224"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HCS2011028.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ72_001225"
     CDS             8241..12464
                     /gene="rpoC"
                     /locus_tag="OQQ72_001225"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCS2011029.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            12677..13216
                     /locus_tag="OQQ72_001226"
     CDS             12677..13216
                     /locus_tag="OQQ72_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-shock protein C"
                     /protein_id="HCS2011030.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKGKSVK
                     FFTIAYNLLRNKQLPQPSK"
     gene            complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ72_001227"
     CDS             complement(13671..14759)
                     /gene="thiH"
                     /locus_tag="OQQ72_001227"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HCS2011031.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALTAQGLQPV"
     gene            complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ72_001228"
     CDS             complement(14756..15526)
                     /gene="thiG"
                     /locus_tag="OQQ72_001228"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418418.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HCS2011032.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR
                     VDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIPPDA
                     RWLLPDPIETLKAAEMLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAK
                     AFRLAVEAGLLARQSGPGSRSHFAHATSPLTGFLEASA"
     gene            complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ72_001229"
     CDS             complement(15528..15728)
                     /gene="thiS"
                     /locus_tag="OQQ72_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HCS2011033.1"
                     /translation="MQILFNDQPMQCATGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHILQDGDQILLFQVIAGG"
     gene            complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ72_001230"
                     /pseudo
     CDS             complement(15712..16467)
                     /gene="thiF"
                     /locus_tag="OQQ72_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ72_001231"
     CDS             complement(16460..17095)
                     /gene="thiE"
                     /locus_tag="OQQ72_001231"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HCS2011034.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVISAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ72_001232"
     CDS             complement(17095..18990)
                     /gene="thiC"
                     /locus_tag="OQQ72_001232"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HCS2011035.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(19071..19171)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ72_001233"
     CDS             complement(19224..19700)
                     /gene="rsd"
                     /locus_tag="OQQ72_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HCS2011036.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ72_001234"
     CDS             19795..20568
                     /gene="nudC"
                     /locus_tag="OQQ72_001234"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HCS2011037.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ72_001235"
     CDS             20608..21672
                     /gene="hemE"
                     /locus_tag="OQQ72_001235"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HCS2011038.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKVTRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ72_001236"
     CDS             21682..22353
                     /gene="nfi"
                     /locus_tag="OQQ72_001236"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HCS2011039.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            22396..22986
                     /locus_tag="OQQ72_001237"
     CDS             22396..22986
                     /locus_tag="OQQ72_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HCS2011040.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVVLSE
                     LVHSRLSGETLEHAVEVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ72_001238"
     CDS             23173..23445
                     /gene="hupA"
                     /locus_tag="OQQ72_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HCS2011041.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            23458..24153
                     /locus_tag="OQQ72_001239"
     CDS             23458..24153
                     /locus_tag="OQQ72_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HCS2011042.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ72_001240"
     CDS             complement(24155..24580)
                     /gene="zraP"
                     /locus_tag="OQQ72_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HCS2011043.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW"
     gene            24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ72_001241"
     CDS             24818..26194
                     /gene="zraS"
                     /locus_tag="OQQ72_001241"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HCS2011044.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ72_001242"
                     /pseudo
     CDS             26191..27515
                     /gene="zraR"
                     /locus_tag="OQQ72_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
     gene            complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ72_001243"
     CDS             complement(27512..28801)
                     /gene="purD"
                     /locus_tag="OQQ72_001243"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCS2011045.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLLLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ72_001244"
     CDS             complement(28813..30402)
                     /gene="purH"
                     /locus_tag="OQQ72_001244"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HCS2011046.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         7332 a         7987 c         8434 g         7182 t
ORIGIN      
        1 gcaaaagttc tgagctaatt gccgataaca tttgactcaa tgcgcactaa aagggcatca
       61 tttgatgccc tttttgcacg ctttcgtacc agaacctggc tcatcagtga ttttctttgt
      121 cataatcatt gctgagacag gctctgttga gggcgtataa tccgaaaagc taatacgcgt
      181 ttcgatttgg tttgcctcgc gatcgcgggg tgaaaatgtt tgtagaaaac ttctgacagg
      241 ttggtttatg agtgcgaata ccgaagctca aggaagcggg cgcggcctgg aagcgatgaa
      301 gtgggtcgtt gtggtggcat tgctcttggt ggcgattgtc ggcaactacc tttatcgcga
      361 cattatgctg ccgctgcgtg cgctggccgt agtaattctg attgctgcag cgggtggtgt
      421 cgcgctgtta acgacaaaag gtaaagctac cgttgctttt gcccgtgaag cgcgtaccga
      481 agtccgtaag gtcatttggc cgactcgcca ggaaacattg cacaccacgc tgattgtggc
      541 tgcggttacc gcagtaatgt cactgatcct gtggggactg gatggtattc tggttcgcct
      601 ggtatccttt atcactggcc tgaggttctg agatgtctga agctcctaaa aagcgctggt
      661 acgtcgttca ggcgttttcc ggttttgaag gccgcgtagc aacgtcgctg cgtgagcata
      721 tcaaattaca caacatggaa gatttgtttg gtgaagtcat ggtaccaacc gaagaagtgg
      781 ttgaaatccg tggcggtcag cgtcgcaaaa gcgaacgtaa attcttccct ggctacgtcc
      841 tcgttcagat ggtgatgaac gacgcgagct ggcacctggt gcgcagcgta ccgcgagtga
      901 tgggcttcat cggcggtact tccgatcgtc ctgcgccaat cagcgataaa gaagtcgatg
      961 cgattatgaa ccgcctgcag caggttggtg ataagccgcg tccgaaaacg ctgtttgaac
     1021 cgggtgaaat ggtccgtgtt aatgatggtc cgttcgctga cttcaacggt gttgttgaag
     1081 aagtggatta cgagaaatct cgtctgaaag tgtctgtttc tatcttcggt cgtgcgaccc
     1141 cggtagagct ggacttcagc caggttgaaa aagcctaacc cagcgatcaa aaaagcggcg
     1201 atttaatcgt tgcacaaggc gcgagattgg aatacaattt cgcgcctttt atttttatgg
     1261 gccttgcccg taaaaacgat tttttatatc acggggagcc tctcagaggc gttattaccc
     1321 aacttgagga atttataatg gctaagaaag tacaagccta tgtcaagctg caggttgcag
     1381 ctggtatggc taacccgagt ccgccagtag gtccggctct gggtcagcag ggcgtaaaca
     1441 tcatggaatt ctgcaaagcg ttcaacgcaa aaactgattc catcgaaaaa ggtctgccga
     1501 ttccggtagt aatcaccgtt tacgctgacc gttctttcac tttcgttacc aagaccccgc
     1561 cggcagcagt tctgctgaaa aaagcggctg gtatcaagtc tggtgccggt aagccgaaca
     1621 aagacaaagt gggtaaaatt tcccgcgctc agctgcagga aatcgcgcag accaaagctg
     1681 ccgacatgac tggtgccgac attgaagcga tgactcgctc catcgaaggt actgcacgtt
     1741 ccatgggcct ggtagtggag gactaagaaa tggctaaact gaccaagcgc atgcgtgtta
     1801 tccgcgagaa agttgatgca accaaacagt acgacatcaa cgaagctatc gcactgctga
     1861 aagagctggc gactgctaaa ttcgtagaaa gcgtggacgt agctgttaac ctcggcatcg
     1921 acgctcgtaa atctgaccag aacgtacgtg gtgcaactgt actgccgcac ggtactggcc
     1981 gttccgttcg cgtagccgta tttacccaag gtgcaaacgc tgaagctgct aaagctgcag
     2041 gcgcagaact ggtaggtatg gaagatctgg ctgaccagat caagaaaggc gaaatgaact
     2101 ttgacgttgt tattgcttct ccggatgcaa tgcgcgttgt tggccagctg ggccaggttc
     2161 tgggtccgcg cggcctgatg ccaaacccga aagtgggtac tgtaacaccg aacgttgctg
     2221 aagcggttaa aaacgctaaa gctggccagg ttcgttaccg taacgacaaa aacggcatca
     2281 tccacaccac catcggtaaa gtggactttg acgctgacaa actgaaagaa aacctggaag
     2341 ctctgctggt tgcgctgaaa aaagcaaaac cgactcaggc gaaaggcgtg tacatcaaga
     2401 aagttagcat ctccaccacc atgggtgcag gtgttgcagt tgaccaggct ggcctgagcg
     2461 cttctgtaaa ctaatgcctt tacgtgggcg gtgattttgt ctacaatctt acccccacgt
     2521 ataatgctta atgcagacgt atatccgaga tattcgggtt gtggcaaggc ggcaactgag
     2581 tgagtcgcca agagcatagc taactatgtg actggtgcga atgaaggaag ccaacgccgc
     2641 cacaagttga atagcgacgg atagaaaaga tttgttcgtt ggagcttggc ctatccaggc
     2701 ctccgtcgaa gaccgcagga gtttcgcaag aaacttaatc ccctgcgtag acggtgacag
     2761 aacgctaaga ttattctttt atattctggc ttgtttctgc tcaccgtaat taagacgctc
     2821 tctccgtttg gaggagtgaa gtgagttcca gagattttct ctggcaaaca tccaggagca
     2881 aagctaatgg ctttaaatct tcaagacaaa caagcgattg ttgctgaagt cagcgaagta
     2941 gccaaaggcg cgctgtctgc agtagttgcg gattcccgtg gcgtaactgt agataaaatg
     3001 actgaactgc gtaaagcagg tcgcgaagct ggcgtataca tgcgtgttgt tcgtaacacc
     3061 ctgctgcgcc gtgctgttga aggtactccg ttcgagtgcc tgaaagacgc gtttgttggt
     3121 ccgaccctga ttgcatactc tatggaacac ccgggcgctg ctgctcgtct gttcaaagag
     3181 ttcgcgaaag cgaatgcaaa atttgaggtc aaagccgctg cctttgaagg tgagctgatc
     3241 ccggcgtctc agatcgaccg cctggcaact ctgccgacct acgaagaagc aattgcacgc
     3301 ctgatggcaa ccatgaaaga agcttcggct ggcaaactgg ttcgtactct ggctgctgta
     3361 cgcgatgcga aagaagctgc ttaatcgcag ttatcttttt aacgcattcg cttacgtata
     3421 aacttattct gatattcagg aacaatttaa atgtctatca ctaaagatca aatcattgaa
     3481 gcagttgcag ctatgtctgt aatggacgtt gtagaactga tctctgcaat ggaagaaaaa
     3541 ttcggtgttt ccgctgctgc tgctgtagct gtagctgctg gcccggttga agctgctgaa
     3601 gaaaaaactg aattcgacgt aattctgaaa gctgctggcg ctaacaaagt tgctgttatc
     3661 aaagcagtac gtggcgcaac tggcctgggt ctgaaagaag ctaaagacct ggtagaatct
     3721 gcaccggctg ctctgaaaga aggcgtgagc aaagacgacg cagaagcact gaaaaaagct
     3781 ctggaagaag ctggcgctga agttgaagtt aaataagcca acccttccgg ttgcagcctg
     3841 agaaatcagg ctgatggctg gtgacttttt agtcaccagc ctttttgcgc tgtaaggcgc
     3901 cagtagcgtt tcacactgtt tgactactgc tgtgcctttc aatgcttgtt tctatcgacg
     3961 acttaatata ctgcgacagg acgtccgttc tgtgtaaatc gcaatgaaat ggtttaagcg
     4021 tgatagcaac aggcattgcg gaaagtgttc cattttccgg tcaacaaaat agtgttgcac
     4081 aaactgtccg ctcaatggac agatgggtcg acttgtcagc gagctgagga accctatggt
     4141 ttactcctat accgagaaaa aacgtattcg taaggatttt ggtaaacgtc cacaagttct
     4201 ggatgtacct tatctccttt ctatccagct tgactcgttt cagaaattta tcgagcaaga
     4261 tcctgaaggg cagtatggtc tggaagcagc tttccgttcc gtattcccga ttcagagcta
     4321 cagcggtaat tccgagctgc aatacgtcag ctaccgcctt ggcgaaccgg tgtttgacgt
     4381 ccaggaatgt caaatccgtg gcgtgaccta ttccgcaccg ctgcgcgtta aactgcgtct
     4441 ggtgatctat gagcgcgaag cgccggaagg caccgtaaaa gacattaaag aacaagaagt
     4501 ctacatgggc gaaattccgc tcatgacaga caacggtacc tttgttatca acggtactga
     4561 gcgtgttatc gtttcccagc tgcaccgtag tccgggcgtc ttctttgact ccgacaaagg
     4621 taaaacccac tcttcgggta aagtgctgta taacgcgcgc atcatccctt accgtggttc
     4681 ctggctggac ttcgaattcg atccgaagga caacctgttc gtacgtatcg accgtcgccg
     4741 taaactgcct gcgaccatca ttctgcgcgc cctgaactac accacagagc agatcctcga
     4801 cctgttcttt gaaaaagtta tctttgaaat ccgtgataac aagctgcaga tggaactggt
     4861 gccggaacgc ctgcgtggtg aaaccgcatc ttttgacatc gaagctaacg gtaaagtgta
     4921 cgtagaaaaa ggccgccgta tcactgcgcg ccacattcgc cagctggaaa aagacgacgt
     4981 caaacttatc gaagtcccgg ttgagtacat cgcaggtaaa gtggttgcta aagactatat
     5041 tgatgagtct accggcgagc tgatctgcgc agcgaacatg gagctgagcc tggatctgct
     5101 ggctaagctg agccagtctg gtcacaagcg tatcgaaacg ctgttcacca acgatctgga
     5161 tcacggccca tatatctctg aaaccttacg tgtcgaccca actaacgacc gtctgagcgc
     5221 actggtagaa atctaccgca tgatgcgccc tggcgagccg ccgactcgtg aagcagctga
     5281 aagcctgttc gagaacctgt tcttctccga agaccgttat gacttgtctg cggttggtcg
     5341 tatgaagttc aaccgttctc tgctgcgcga agaaatcgaa ggttccggta tcctgagcaa
     5401 agacgacatc attgatgtta tgaaaaagct catcgatatc cgtaacggta aaggcgaagt
     5461 cgatgatatc gaccacctcg gcaaccgtcg tatccgttcc gttggcgaaa tggcggaaaa
     5521 ccagttccgc gttggcttgg tacgtgtaga gcgtgcggtg aaagagcgtc tgtctctggg
     5581 cgatctggat accctgatgc ctcaggatat gatcaacgcc aagccgattt ccgcagcagt
     5641 gaaagagttc ttcggttcca gccagctgtc tcagtttatg gaccagaaca acccgctgtc
     5701 tgagattacg cacaaacgtc gtatctccgc actcggccca ggcggtctga cccgtgaacg
     5761 tgcaggcttc gaagttcgag acgtacaccc gactcactac ggtcgcgtat gtccaatcga
     5821 aacccctgaa ggtccgaaca tcggtctgat caactctctg tccgtgtacg cacagactaa
     5881 cgaatacggc ttccttgaga ctccgtatcg taaagtgacc gacggtgttg taactgacga
     5941 aattcactac ctgtctgcta tcgaagaagg caactacgtt atcgcccagg cgaactccaa
     6001 cctggatgaa gaaggccact tcgtagaaga cctggtaact tgccgtagca aaggcgaatc
     6061 cagcttgttc agccgcgacc aggttgacta catggacgta tccacccagc aggtggtatc
     6121 cgtcggtgcg tccctgatcc cgttcctgga acacgatgac gccaaccgtg cattgatggg
     6181 tgcgaacatg caacgtcagg ccgttccgac tctgcgcgct gataagccgc tggttggtac
     6241 tggtatggaa cgtgctgttg ccgttgactc cggtgtaact gcggtagcta aacgtggtgg
     6301 tgtcgttcag tacgtggatg cttcccgtat cgttatcaaa gttaacgaag acgagatgta
     6361 tccgggtgaa gcaggtatcg acatctacaa cctgaccaaa tacacccgtt ctaaccagaa
     6421 cacctgtatc aaccagatgc cgtgtgtgtc tctgggtgaa ccggttgaac gtggcgacgt
     6481 gctggcagac ggtccgtcca ccgacctcgg tgaactggcg cttggtcaga acatgcgcgt
     6541 agcgttcatg ccgtggaatg gttacaactt cgaagactcc atcctcgtat ccgagcgtgt
     6601 tgttcaggaa gaccgtttca ccaccatcca cattcaggaa ctggcgtgtg tgtcccgtga
     6661 caccaagctg gggccggaag agatcaccgc tgacatcccg aacgtgggtg aagctgcgct
     6721 ctccaaacta gatgaatccg gtatcgttta cattggtgcg gaagtgaccg gtggcgacat
     6781 tctggttggt aaggtaacgc cgaaaggtga aactcagctg accccagaag aaaaactgct
     6841 gcgtgcgatc ttcggtgaga aagcctctga cgttaaagac tcttctctgc gcgtaccaaa
     6901 cggtgtatcc ggtacggtta tcgacgttca ggtctttact cgcgatggcg tagaaaaaga
     6961 caaacgtgcg ctggaaatcg aagaaatgca gctcaaacag gcgaagaaag acctgtctga
     7021 agaactgcag atcctcgaag cgggtctgtt cagccgtatc cgtgctgtgc tggtagccgg
     7081 tggcgttgaa gctgagaagc tcgacaaact gccgcgcgat cgctggctgg agctgggcct
     7141 gacagacgaa gagaaacaaa atcagctgga acagctggct gagcagtatg acgaactgaa
     7201 acacgagttc gagaagaaac tcgaagcgaa acgccgcaaa atcacccagg gcgacgatct
     7261 ggcaccgggc gtgctgaaga ttgttaaggt atatctggcg gttaaacgcc gtatccagcc
     7321 tggtgacaag atggcaggtc gtcacggtaa caagggtgta atttctaaga tcaacccgat
     7381 cgaagatatg ccttacgatg aaaacggtac gccggtagac atcgtactga acccgctggg
     7441 cgtaccgtct cgtatgaaca tcggtcagat cctcgaaacc cacctgggta tggctgcgaa
     7501 aggtatcggc gacaagatca acgccatgct gaaacagcag caagaagtcg cgaaactgcg
     7561 cgaattcatc cagcgtgcgt acgatctggg cgctgacgtt cgtcagaaag ttgacctgag
     7621 taccttcagc gatgaagaag ttatgcgtct ggctgaaaac ctgcgcaaag gtatgccaat
     7681 cgcaacgccg gtgttcgacg gtgcgaaaga agcagaaatt aaagagctgc tgaaacttgg
     7741 cgacctgccg acttccggtc agatccgcct gtacgatggt cgcactggtg aacagttcga
     7801 gcgtccggta accgttggtt acatgtacat gctgaaactg aaccacctgg tcgacgacaa
     7861 gatgcacgcg cgttccaccg gttcttacag cctggttact cagcagccgc tgggtggtaa
     7921 ggcacagttc ggtggtcagc gtttcgggga gatggaagtg tgggcgctgg aagcatacgg
     7981 cgcagcatac accctgcagg aaatgctcac cgttaagtct gatgacgtga acggtcgtac
     8041 caagatgtat aaaaacatcg tggacggcaa ccatcagatg gagccgggca tgccagaatc
     8101 cttcaacgta ttgttgaaag agattcgttc gctgggtatc aacatcgaac tggaagacga
     8161 gtaattctcg ctcaaacagg tcactgctgt cgggttaaaa cccggcagcg gattgtgcta
     8221 actccgacgg gagcaaatcc gtgaaagatt tattaaagtt tctgaaagcg cagactaaaa
     8281 ccgaagagtt tgatgcgatc aaaattgctc tggcttcgcc agacatgatc cgttcatggt
     8341 ctttcggtga agttaaaaag ccggaaacca tcaactaccg tacgttcaaa ccagaacgtg
     8401 acggcctttt ctgcgcccgt atctttgggc cggtaaaaga ttacgagtgc ctgtgcggta
     8461 agtacaagcg cctgaaacac cgtggcgtca tctgtgagaa gtgcggcgtt gaagtgaccc
     8521 agactaaagt acgccgtgag cgtatgggcc acatcgaact ggcttccccg actgcgcaca
     8581 tctggttcct gaaatcgctg ccgtcccgta tcggtctgct gctcgatatg ccgctgcgcg
     8641 atatcgaacg cgtactgtac tttgaatcct atgtggttat cgaaggcggt atgaccaacc
     8701 tggaacgtca gcagatcctg actgaagagc agtatctgga cgcgctggaa gagttcggtg
     8761 acgaattcga cgcgaagatg ggtgcggaag caatccaggc tctgctgaag agcatggatc
     8821 tggagcaaga gtgcgaacag ctgcgcgaag agctgaacga aaccaactcc gaaaccaagc
     8881 gtaaaaagct gaccaagcgt atcaaactgc tggaagcgtt cgttcagtct ggtaacaaac
     8941 cagagtggat gatcctgacc gttctgccgg tactgccgcc agatctgcgt ccgctggttc
     9001 cgctggatgg tggtcgtttc gcgacttctg acctgaacga tctgtatcgt cgcgtcatta
     9061 accgtaacaa ccgtctgaaa cgtctgctgg atctggctgc gccggacatc atcgtacgta
     9121 acgaaaaacg tatgctgcag gaagcggtag acgccctgct ggataacggt cgtcgcggtc
     9181 gtgcgatcac cggttctaac aagcgtcctc tgaaatcttt ggccgacatg atcaaaggta
     9241 aacagggtcg tttccgtcag aacctgctcg gtaagcgtgt tgactactcc ggtcgttctg
     9301 taatcaccgt aggtccatac ctgcgtctgc atcagtgcgg tctgccgaag aaaatggcgc
     9361 tggagctgtt caaaccgttc atctacggca agctggaact gcgtggtctt gctaccacca
     9421 ttaaagctgc gaagaaaatg gttgagcgcg aagaagctgt cgtttgggat atcctggacg
     9481 aagttatccg cgaacacccg gtactgctga accgtgcacc gactctgcac cgtctgggta
     9541 tccaggcatt tgaaccggta ctgatcgaag gtaaagctat ccagctgcac ccgctggttt
     9601 gtgcggcata taacgccgac ttcgatggtg accagatggc tgttcacgta ccgctgacgc
     9661 tggaagccca gctggaagcg cgtgcgctga tgatgtctac caacaacatc ctgtccccgg
     9721 cgaacggcga accaatcatc gttccgtctc aggacgttgt tctgggtctg tactatatga
     9781 cccgtgactg tgttaacgcc aaaggcgaag gcatggtgct gactggcccg aaagaagcag
     9841 aacgtctgta tcgctctggt ctggcttctc tgcatgcgcg cgttaaagtg cgtatcaccg
     9901 agtatgaaaa agatgcaaac ggtgaattag tagcgaaaac cagcctgaaa gacacgactg
     9961 ttggccgtgc cattctgtgg atgattgtac cgaaaggtct gccttactcc atcgtcaacc
    10021 aggcgctggg taaaaaagca atctccaaaa tgctgaacac ctgctaccgc attctcggtc
    10081 tgaaaccgac cgttattttt gcggaccaga tcatgtacac cggcttcgcc tatgcagcgc
    10141 gttctggtgc atctgttggc atcgatgaca tggtcatccc ggagaagaaa cacgaaatca
    10201 tctccgaggc agaagcagaa gttgctgaaa ttcaggagca gttccagtct ggtctggtaa
    10261 ctgcgggcga acgctacaac aaagttatcg atatctgggc tgcggcgaac gatcgtgtat
    10321 ccaaagcgat gatggataac ctgcaaactg aaaccgtgat taaccgtgac ggtcaggaag
    10381 agaagcaggt ttccttcaac agcatctaca tgatggccga ctccggtgcg cgtggttctg
    10441 cggcacagat tcgtcagctt gctggtatgc gtggtctgat ggcgaagccg gatggctcca
    10501 tcatcgaaac gccaatcacc gcgaacttcc gtgaaggtct gaacgtactc cagtacttca
    10561 tctccaccca cggtgctcgt aaaggtctgg cggataccgc actgaaaact gcaaactccg
    10621 gttacctgac tcgtcgtctg gttgacgtgg cgcaggacct ggtggttacc gaagacgatt
    10681 gtggtaccca tgaaggtatc atgatgactc cggttatcga aggtggtgat gttaaagagc
    10741 cgctgcgcga tcgcgtactg ggtcgtgtaa ctgctgaaga cgttctgaag ccgggtactg
    10801 ctgatatcct cgttccgcgc aacacgctgc tgcacgaaca gtggtgtgac ctgctggaag
    10861 agaactctgt cgacgcggtt aaagtacgtt ctgttgtatc ttgtgacacc gactttggtg
    10921 tatgtgcgca ctgctacggt cgtgacctgg cgcgtggcca catcatcaac aagggtgaag
    10981 caatcggtgt tatcgcggca cagtccatcg gtgaaccggg tacacagctg accatgcgta
    11041 cgttccacat cggtggtgcg gcatctcgtg cggctgctga atccagcatc caggtgaaaa
    11101 acaaaggtag catcaagctc agcaacgtga agtcggttgt gaactccagc ggtaaactgg
    11161 ttatcacttc ccgtaatact gaactgaaac tgatcgacga attcggtcgt accaaagaaa
    11221 gctacaaagt accttacggt gcggtactgg cgaaaggcga tggcgaacag gttgctggcg
    11281 gcgaaaccgt tgcaaactgg gacccgcaca ccatgccggt tatcaccgaa gtaagcggtt
    11341 ttgtacgctt tactgacatg atcgacggtc agaccattac tcgtcagaca gacgaattga
    11401 ccggtctgtc ttcgctggtg gttctggatt ccgcagaacg taccgcaggt ggtaaagatc
    11461 tgcgtccggc actgaaaatc gttgatgctc agggtaacga cgttctgatt ccgggtaccg
    11521 atatgcctgc gcagtacttc ctgccgggta aagcgattgt tcagctggaa gatggcgtac
    11581 agatcagctc tggtgacacc ctggcgcgta ttccgcagga atccggcggt accaaggaca
    11641 tcaccggtgg tctgccgcgc gttgcggacc tgttcgaagc acgtcgtccg aaagagccgg
    11701 caatcctggc tgaaatcagc ggtatcgttt ccttcggtaa agaaaccaaa ggtaaacgtc
    11761 gtcttgttat caccccggta gacggtagcg atccgtacga agagatgatt ccgaaatggc
    11821 gtcagctcaa cgtgttcgaa ggtgaacgtg tagaacgtgg tgacgtaatt tccgacggtc
    11881 cggaagcgcc gcacgacatt ctgcgtctgc gtggtgttca tgctgttact cgttacatcg
    11941 ttaacgaagt acaggacgta taccgtctgc agggcgttaa gattaacgat aaacacatcg
    12001 aagttatcgt tcgtcagatg ctgcgtaaag ctaccatcgt taacgcgggc agctccgact
    12061 tcctggaagg cgaacaggtt gaatactctc gcgtcaagat cgcaaaccgc gaactggaag
    12121 cgaacggcaa agtgggtgca acttactccc gcgatctgct gggtatcacc aaagcgtctc
    12181 tggcaaccga gtccttcatc tccgcggcat cgttccagga gaccactcgc gtgctgaccg
    12241 aagcagccgt tgcgggcaaa cgcgacgaac tgcgcggcct gaaagagaac gttatcgtgg
    12301 gtcgtctgat cccggcaggt accggttacg cgtaccacca ggatcgtatg cgtcgccgtg
    12361 ctgcgggtga agctccggct gcaccgcagg tgactgcaga agacgcatct gccagcctgg
    12421 cagaactgct gaacgcaggt ctgggcggtt ctgataacga gtaatcgtta atccgcaaat
    12481 aacgtaaaaa cccgcttcgg cgggtttttt tatgggggga gtttagggaa agagcatttg
    12541 tcagaatatt taaggaattt ctgaatactc ataatcaatg tagagatgac taatatcctg
    12601 aaactgactg aactaattga gtcaaactcg gcaaggattc gatactattc ctgtgtaact
    12661 ttcttaagga acgagaatga aacaggaagt ggaaaagtgg cgaccttttg gacatccgga
    12721 tggtgatatt cgtgatttat catttcttga tgctcatcag gctgtctacg ttcagcatca
    12781 tgagggcaaa gagcctttag agtatcgctt ttgggttacc tactctcttc actgcttcac
    12841 aaaagattat gaacatcaga cgaacgaaga aaaacaatcg ttaatgtacc acgcgcctaa
    12901 agaatctcgt cccttctgcc agcaccgtta taacttagcg cgcacacact taaaaagaac
    12961 tattttggcg ctgccagaaa gcaacgttat tcatgccggg tatggtagct atgccgtgat
    13021 tgaggtggac ttagacggag gagataaggc attttacttt gttgcgttca gggctttcag
    13081 ggaaaagaaa aaactccgtt tgcatgtaac tagcgcttat cccatttctg aaaaacagaa
    13141 aggtaaatca gtgaaatttt tcaccattgc ctacaactta ttgagaaata agcagcttcc
    13201 tcagccctca aaataacaaa acccacctta aggtgggttt cgccagagaa ttatctctgg
    13261 tattcagaac gccattaccg gactttgcct tgaccttgcg ataatcgcag gttgcgggat
    13321 gtctgaattt cttcagtctg ctgcatcctg gaagatgaga acatgtgttc ttattttcgt
    13381 ctctatcata gttgagtatt tactctctta caatcagatc tctttcattg ctcaacaggc
    13441 gatggcttca gactttgcat tacggaattt ttaagaaagg cagggcgaaa cgaggaagaa
    13501 gcttttcgcc ctggacaaca ttcctgctga cggcactacc ataaaaaaac acaacgcttt
    13561 caacaacctt gcgtttttca tcttccgtag cggctcggaa taaatttacg ttcttacatt
    13621 ccgtctcata gtctttgcga ggcccgtccc agatagctgt cccagtcttt tcataccggc
    13681 tgcaaaccct gagcggttaa cgcggcagca accgcttccg gtctgcgatc gtcgtgcggt
    13741 gagaactgtt ccaactcggg gtgattatcg gcatagccac ctggctgcgt tttcgagaag
    13801 gcgctgacgt tattgatcgc cagcggaata acgcgatcgc gaaaccacgg tgattcccgc
    13861 gtggagagtg acagttcaat ctccggtgca agcagtcgga aggcgcagat ggtttgcact
    13921 aactggcgtt catccataat cgacgcaggc tcaatgccgc cagtacacgg gcgcaggcgc
    13981 ggaaaggaga cagagtaacg gctttgccag taatgctgtt gcagccatag caaatgttcg
    14041 gcaaccatat agcagtcaac gcgccagttg tcggaaaggc caattagcgc gccgaggcct
    14101 atcttatcaa tccccgcacg ccccagccga tccggcgttt ccagccgcca gaagaagtcc
    14161 tgttttttgc ctttcagatg atggcgggca taagtcgcct cgtgatatgt ctcctgataa
    14221 accatcacgc catccagacc aagctgcttt aactcggcgt attccgtctt cgccagcggt
    14281 tgcacttcca tttgtagtga agagaactgt tcacgcaggg cggggagatg acgacgaaag
    14341 taatccatcc ccactttcgc ctgatgttca ccagtgacta atagcagatg ttcaaagccc
    14401 atctcccgta tagcggcgct ttccctggca atatccgctt catccagcgt tttgcgcttg
    14461 atgcgattac tcatggaaaa tccgcagtac gtgcagtcgt tagcgcaaag attggaaaga
    14521 taaagcggga cgtagaaact aactgtgttg ccaaatcgct gacgggtcag acgctgcgcc
    14581 cgttgggcca gttgttccag atagccactg gcggctggcg ataacagcgc catcatatcg
    14641 tcgcgggtga attgcgaggc atttagcgcc cgctctacgt caacagccgt tttgccgttg
    14701 atacgcaggc ggatgtcatc ccagtccagt tgtcgccagc gatcgctgaa ggttttcatg
    14761 ccgatgcctc cagaaatcca gtcagcgggc tggtggcatg agcaaaatga ctgcggctgc
    14821 ccggtccgga ctgacgtgcc agcaggcctg cttctaccgc cagacgaaat gccttcgcca
    14881 tgttgacggg atcgtccgct acggcaatcg ccgtattcac taacaccgcg tcggccccca
    14941 tttccagggc ctgcgctgca tggctgggaa cgccgatgcc agcatcgaca accaccggaa
    15001 ctgtggcctg ctggataata atctccagca tggcacgggt ttccagtccc tgattcgagc
    15061 caatcggcgc gccgagcggc atcaccgctg cacagccgac ttcttccaga cgtttacaca
    15121 ataccggatc ggccccgcag taaggcagca cgacaaatcc ctgttgtacc agcatttcgg
    15181 cggctttcag agtttcgatg ggatcgggca acagccagcg ggcgtcaggg ggaatctcta
    15241 attttaacca gtttgtgcct aacgcttcac gtgccagatg ggcggcgaaa atggcttctt
    15301 ccgctgtttt cgccccggaa gtatttggca gcagggtcac acccgccgcg ataagcggtt
    15361 cgaggatagc gtcgttgtgc tggcgcaagt cgacacgttt catcgccagt gtcaccagct
    15421 ggctgccgga agcgcggatc gcctccacca tcagttgtga agaagcgaat ttccctgtgc
    15481 cggtaaacag atgtgaatca aacgttttgt ccgcaatacg taacatctca accccctgca
    15541 ataacctgaa aaagcaggat ctggtcgcca tcctgcagga tatgttgcgt ccactgctca
    15601 cgcgggacga tttgctgatt aatcgccaga gccgcgcccg cttgtcgttg gtcgagttgc
    15661 tccagtagtt cgtgaacagt ttgcccggtg gcgcactgca tcggttgatc gttaaacagg
    15721 atctgcattg cttcctccgc ataccgggca accactggcg cggcgcaacg ccaggctgcg
    15781 ccactggctc gatttaccgt cgaacagtcg gagttctccc gcaggtgtct ctataccgct
    15841 taataactta atggcttcca gtgcctgcaa agtgcccata accccgacca ccgggccaac
    15901 cacgcccgcc gtgcggcagt tgcgttctgg ctcctggtta tctggccaca ggcagcggta
    15961 acacccctgc tcccagggcg gcgtcagtac catcaactga ccgccaaatc cgaccgcgct
    16021 ggcggtgata agcggcgtgt tgagtaccac gcaggcggca ttaatctcct ggcgagtcgc
    16081 catattgtcg gtacagtcga gcaccacatc ggcccgtgca accgcatctt ttaacgcctc
    16141 acccgttaac cgttgttgta atgctgtcag ttgaatgtcg ggattcaact gtgtcagtcg
    16201 ctgttggctg acctgcgatt tcgggctgtt gatatcttca gtggtaaaga gaatttgtcg
    16261 ttacagattg cttaaatgca catcgtcgtc atctgccagt accagcgtcc cgacgccagc
    16321 gcccgccagg tatagcgcag caggtgtacc cagcccgcca agaccgataa tcagcacctg
    16381 gctgtcgagc agtttttgct gcccgtcaag agcgatatca tcgagcagga tttggcggct
    16441 ataacgcata aaatcacggt cattcatcgc caactcctgc aatttccagc aactgtgccg
    16501 ttgccaaacg ccagtctgcg gcttgagtaa tggcgctgat gacggcgata ctgccgacac
    16561 ccgttgctat caccgcaggc gcgcgtgcca gactgatacc gccaatcgcc acggtgggat
    16621 aatccgccag tcgctcaaca tgccgtgcca gctgttccag cccctgcggt gcagaaggca
    16681 tctgtttggt ttgcgtcggg aacacatgtc ccagcgcgat ataagagggg cgtgctgcca
    16741 gcgcgacgtc gatttccata tcgtcatgtg tcgaaacacc cagccgcagg cctgccgcgc
    16801 ggatggcatt gagatcggtg gcttgcaaat cttcctgccc caaatggacg ccatacgcct
    16861 gatgcttgat cgcgagccgc cagtaatcgt tgataaacaa tcgcgcgtta tagcggcggc
    16921 ccagcgcaat tgccgccacg acatcggctt ccacctcttc atcgcgccga tctttgatgc
    16981 gtagctggag agtacgtacg cctgcatcca acagacgttc gatccactgt acgctgtcca
    17041 ccactgggta cagtcctaaa cgaaaaggta caggaggaaa atcaggctga tacatcacgc
    17101 ttcctcctta cgcaggtaga tttctccgcc tctggcacgg aagttctccg acatatccgc
    17161 cattcccatt tcaatagttt gcgtggcggc gtaatcacgc acttcctggc tgattttcat
    17221 cgagcagaat ttcggcccac acatggagca aaaatgggcg actttacctg actcttgcgg
    17281 cagggtttca tcgtgataag cgcgggcggt aaacgggtcg agggccagat taaactggtc
    17341 ttcccagcga aattcgaagc gggctttcga catggcgtta tcgcgaattt gcgcgcccgg
    17401 atgccctttc gccaggtcag cggcgtgggc ggcaatctta taggtgataa gcccctgctt
    17461 aacatcttct ttattaggca gacccagatg ctcttttggt gttacgtaac agagcatcgc
    17521 gcagccaaac cagccaatca tcgccgcacc aatccccgac gtgaagtggt catagcccgg
    17581 cgcaatatcg gtagttagcg gccccagagt gtaaaacggc gcttcgtggc agtgctctaa
    17641 ctcctcggtc atattgcggc ggatcatctg catcggcacg tggcctgggc cttcaatcat
    17701 cacctgcacg tcatattccc aggcaatttt ggtcagttcg cccagcgtat gcagctcggc
    17761 aaactgcgct tcatcgttgg cgtcctgaat agaaccgggg cgcagaccgt cgcccagcga
    17821 cagcgaaacg tcataagcgg cacagatttc acaaatttcg cggaagtgtt gatagaggaa
    17881 attttcctga tgatgggaga ggcaccattt cgccataatc gaaccgccgc gagagacgat
    17941 accggtcagg cgtttcgcgg tcatcggcac atagcgcaac agtacgcccg catggatagt
    18001 gaagtaatcc acaccttgct cggcctgttc cagcagcgtg tcgcggaacg cttcccaggt
    18061 aagatcttcg gcgatcccgt taaccttctc cagcgcctgg tagatcggca ctgtaccgat
    18121 cggcaccgga ctgttacgca aaatccactc gcgggtttcg tgaatatagc gaccggtgga
    18181 gagatccatc accgtatccg ctccccagcg cgtggaccat accagctttt ccacttcttc
    18241 ttcgatggaa gaggtgaccg ccgagttgcc gatattggcg ttaactttta ccaggaagtt
    18301 acggccaata atcatcggct ccgattccgg atgattaatg ttggccggga taatcgcacg
    18361 tccggcagca acttcatcac ggacaaattc cgcagtgata ttttccggca gacgtgcgcc
    18421 aaagctcatt cccggatgct ggtggcgtaa aacttcgcta cgtatgcgct cgcggcccat
    18481 attctcgcgg atggcgatga attccatttc cggagtgatg atgccctggc gggcgtagtg
    18541 cagttgggtg acacggcgtc ctgctttggc gcgttttggt gttagtacgc cgctaaaacg
    18601 cagttcgtcg aggccatcat ctgccagccg cgctttagtg taatcggaac tgcgcacggt
    18661 aagttcttcg gtatcgccgc gcgcatcgat ccacggctgg cgtagttttg ccagcccttg
    18721 ctgcacgtta atggcgatct gcggatcgcc atatgggccg gaggtgtcgt agaccggaat
    18781 cgcttcgttt tcttcaaact gcggctgttc tttgctgccg ccgattagcg tcgggctaag
    18841 ctggatctca cgcatcggca cgcgaacgcc agagtgtgtg ccagtgaggt aaatgcgttt
    18901 tgagttggga aaggcggtgc cttccagggt gtcgataaaa tgttgggccc gggcgcgttg
    18961 ttcgcggcgg gtcagttttg ttgcagacat agctcattcc aaaaagttaa ggacgtggct
    19021 tgtcagacga cggatgaagc aagagacgat cgccgcaaag gcgatgcgat agcagattaa
    19081 ctcttgttcc cttcgcaggt attagcctga tcaggttccg cggatcccga ataaacggtc
    19141 tcagccagtt aaggcactcc gacaagaaat tagcccccac aaacggggcg ttgaatgtaa
    19201 attacgcgtt aacagcgcag aactcaagca ggatgtttga cgcgggcggc gtcaagcacc
    19261 agcagaatca gcttatcttc cagcacaaag cgcgcttcca gcgcctcgcc gatgtcagat
    19321 aaaacctttt gaaactcaag gtaattatca tgatcgatgg cggtttccag gctggaatcg
    19381 tagtaatcca taatctgttg ggtattggct tcgagttgcg gccaaatctt cgcggcgcgc
    19441 gcgagttgcc cgttgccttc cagcttatga agaatgcgct cataaatact gaaatgtccg
    19501 gcagacaagt aatcgaccag gctctgacaa aaatcatcaa gggctttttc gtttagcctc
    19561 atgtacgatt ctttgccagg cttaatgcca accagattgt agtaagccac gagcagatgc
    19621 ttacgtacat gtagccagcg atcaaccagt ttgttacttc ctctgacgcg ctccgtcagg
    19681 ttatcgagct ggttaagcat gattgactcc gcaagtttgt attcaaaaac tgctcagtga
    19741 gaaatgtaaa aaccatgtta aacatgccag tgatgcaaag gtagtgcaag agctatggat
    19801 cgtataattg aaaaattaga tcacggctgg tgggtcgtca gccatgaaca aaaattatgg
    19861 ttgccgaagg gagaattgcc atatggcgaa gcggcaaatt tcgatcttgt gggtcagcgc
    19921 gcactacaaa tcggcgaatg gcagggggaa cctgtttggt tagtacaaca gcagcggcgt
    19981 cacgatatgg ggtcggtacg tcaggtcatt gatctcgatg ttgtgctgtt tcaactggcc
    20041 ggacgaggcg tacaactggc ggagttttac cgatcgcata aatactgtgg ttactgcggg
    20101 catgaaatgt atccgagcaa aaccgaatgg gcgatgctgt gcagccattg ccgtgagcgt
    20161 tactacccgc aaatcgcccc ctgcattatt gttgccatcc gtcgcgatga ttcgatcctc
    20221 ctcgcccagc atacccgcca tcgtaacggt gtccatacag tacttgccgg attcgtcgaa
    20281 gtgggcgaaa ccctcgagca ggcagtcgcg cgggaagtga tggaagagag cggaattaaa
    20341 gttaaaaact tgcgttacgt gacttctcag ccgtggccgt ttcctcagtc tttaatgacc
    20401 gcgtttatgg cggaatatga cagcggcgac atcgtgatcg acccgaaaga attgctcgag
    20461 gcgaactggt atcgctatga cgatttgccg ttactcccgc cgcccggcac cgtagcgcgc
    20521 cgtctgatag aagatactgt ggcgatgtgt cgggcagagt atgagtgatg atacactgac
    20581 cgcctgacgc actaaggaac agccaaaatg accgaactta aaaacgatcg ttatctgcgg
    20641 gcgctgctgc gccagcccgt tgatgtcact ccagtatgga tgatgcgcca ggcgggtcgc
    20701 tatctaccgg aatataaagt cacgcgcgcc caggcgggcg attttatgtc gctgtgcaaa
    20761 aacgccgagc tggcgtgcga agtgactttg caaccgctgc gtcgctaccc gctggatgcg
    20821 gcgatcctct tttccgatat cctcaccgtg ccggacgcga tggggttagg gctctatttt
    20881 gaagccggag aaggtccgcg ttttacctcg ccagtcacct gcaaagccga cgtcgataag
    20941 ctgccaattc cggacccgga agatgagctg ggttacgtga tgaacgcggt gcgtaccatt
    21001 cgtcgcgaac tgaaaggcga agtgccgctg attggttttt ccggcagccc gtggacgctg
    21061 gcaacctaca tggtggaagg cggcagcagc aaagccttca ccgtgatcaa aaaaatgatg
    21121 tatgccgatc cgcaggcgct gcacgctcta ctcgataaac tggcgaaaag cgtcactttg
    21181 tatctgaatg cgcagattaa agccggtgct caggcagtga tgattttcga cacctggggc
    21241 ggtgtgctta ccgggcgcga ttatcaacag ttctcgctct attacatgca taaaattgtt
    21301 gatggtttac tgcgtgaaaa cgacggtcgc cgcgtaccgg tcacgctgtt taccaaaggc
    21361 ggcggacagt ggctggaagc gatggcagaa accggttgcg atgcgttggg cctcgactgg
    21421 acaacggata tcgccgatgc gcgccgccgt gtgggcaata aagtcgcgtt gcagggtaat
    21481 atggatccgt cgatgctgta cgcgccgcct gcccgcattg aagaagaagt agcgactata
    21541 cttgcaggtt tcggtcacgg cgaaggtcat gtctttaacc ttggtcacgg cattcatcag
    21601 gatgtgccgc cagaacatgc tggcgtgttc gtggaggcag tgcatcgact gtctgaacaa
    21661 tatcaccgct aaggagtgat tatggatctc gcgtcattac gcgctcaaca aatcgaactg
    21721 gcttcttctg tgatccgcga ggatcgactc gataaagatc caccggatct gatcgccgga
    21781 gccgatgtcg ggtttgagca gggcggagaa gtgacgcgag cggcgatggt gctgctgaaa
    21841 tatccctcgc ttgagctggt ggagtataaa gttgcccgca tcgccaccac catgccttac
    21901 attccaggtt ttctttcctt ccgcgaatat cctgcgctgc tggcagcgtg ggagatgctg
    21961 tcgcaaaagc cggatttagt gtttgtcgat ggtcatggga tctcgcatcc tcgccgtctt
    22021 ggcgtcgcca gccattttgg tttgatggtg gatgtgccaa cgatcggcgt ggcgaaaaaa
    22081 cggctctgcg gtaaattcga accgctctcc agcgaaccgg gcgcgctggc cccactgatg
    22141 gataaaggcg agcagctggc ctgggtctgg cgcagcaaag cgcgctgtaa cccgttgttt
    22201 atcgctaccg gccatcgggt cagcgtggac agcgcgctgg cgtgggtaca acgctgcatg
    22261 aaaggctatc gtctgccgga gccaacgcgc tgggcggacg cggtggcctc ggaacgtccg
    22321 gcgttcgtgc gctatacagc aaatcagccc taattcaggt aaactgcgga taatttccgt
    22381 atttgagaac ttaacatgtt acaaaaccca attcatctgc gtctggagcg cctggaaagc
    22441 tggcagcatg tcactttcat ggcttgctta tgcgaacgca tgtaccccaa ttacgccatg
    22501 ttctgccagc aaaccggttt tggtgatggg caaatttacc gtcgtattct cgatctcatc
    22561 tgggaaacgc tgaccgttaa agacgcaaaa gtaaatttcg acagccaact ggagaaattt
    22621 gaagaagcga ttccttcagc cgacgatttc gatctgtacg gcgtttatcc ggcaatcgat
    22681 gcctgcgtgg tgttaagtga actggtccat tcgcgtttga gtggtgaaac gctcgaacac
    22741 gcggtggaag tgagtaagac ctccatcacg accgttgcga tgctggaaat gactcaggtt
    22801 ggtcgcgaaa tgagcgatga agagcttaaa gaaaacccag ctgtagagca agaatgggac
    22861 attcagtggg aaatattccg acttttagct gagtgcgaag aacgcgatat cgagctgata
    22921 aaaggcctta gggcagacct gcgtgaggcg ggtgagagca atattggtat aatttttcag
    22981 caataagacc agaaaacgtg atttaacgcc tgatttgtcg tacttggagt cttccctttc
    23041 gccccccgtc tggtctacat ttggggggcg aaaaaaagtg gctatcggtg cgtgtatgca
    23101 ggagagtgct attctggcat ttccgtcgca ctcgatgctt agcaagcgat aaacacattg
    23161 taaggataac ttatgaacaa gactcaactg attgatgtaa ttgcagagaa agcagaactg
    23221 tccaaaaccc aggctaaagc tgctctggag tccactctgg ctgcaattac tgagtctctg
    23281 aaagaaggcg atgctgtaca actggttggt ttcggtacct tcaaagtgaa ccaccgcgct
    23341 gagcgtactg gccgcaaccc gcagaccggt aaagaaatca aaattgccgc agctaacgta
    23401 ccggcatttg tttctggcaa ggcactgaaa gacgcagtta agtaagattg cgtggcagtg
    23461 aacagtttta acgaaggggt ggtttcaccc cttttgtctt tctggcgtcg atcattgatg
    23521 ctggctggcg ctctgcttct cactgcctgt agtcataact cttcacttcc tccctttacc
    23581 gccagtggat ttgctgaaga ccagggcgcg gtacgcatct ggcgaaaaga cagcggcgat
    23641 aatgtgcatc tgcttgccgt gtttagcccg tggcgcagtg gcgataccac gacgcgagag
    23701 tatcgctggc agggcgataa cctcacgctc atcaatatca atgtttacag caaaccgccg
    23761 gtgaatattc gcgcgcgttt tgacgatcgc ggtgatctga gctttatgca acgtgaatcc
    23821 gatggggaaa agcagcagct ttctaacgac caaatcgatt tataccgtta tcgtgctgat
    23881 cagatccgcc agattagcga tgccttacgt caggggagag tcgtgctgcg ccaggggcgc
    23941 tggcatgcga tggaacagac cgtgaccacc tgcgaagggc aaaccattaa acctgattta
    24001 gattcgcagg cgatagcgca tatcgagcgc cgccagagcc gctcttctgt tgatgtcagc
    24061 gtggcatggc tggaagcgcc cgaaggttcg caattactgt tagtggcaaa ctctgatttc
    24121 tgtcgctggc aacccaacga gaaaacgttc tgatttacca gtggcccata cccatatgac
    24181 cgccaccacc gcagccgccg tagcccatgc ccattccggc tccgcgcgga atacccgctt
    24241 cagccatcgc gatatctcgt ttcacccgta actcatctaa cgactgacgc aaattctcca
    24301 tctctttggc gaccgcgtta attttgctgc tatccggtgg gttcgcggct aacagggcat
    24361 tgtattcata acgcttcgtc accagttgct gttgcagtgc gctgctttga gcgtaaaagt
    24421 cattatggat tttctgccac gctgtctgtt gttcgctggt caaaggcgcg gcattttgct
    24481 gccacatacc gtgtccgccg tgagcaaatg cagatgtcga tcccatcgcc attgctgaaa
    24541 gcgccatcat taccagggca attttcgtgt tccgtttcat ggttaatcct ccagtggttg
    24601 tcttacttcg ggtattgcat cttccgtgcc aacgatgaaa cgctgatatg acgggtaatc
    24661 tggcatgata aacgagtaaa aatgactcgc ctgctgcggg tagcgagtca tttttactca
    24721 ttgaaactta agcctttgtg ttacagcgca gggtaagcgc tgataaaaga tggcatgatt
    24781 tctgctgtca gaaagggatg agcaggcaaa gaagaagatg cgttttatgc aacgttctaa
    24841 agactcctta gctaaatggt taagcgcgat cctccccgtg gtcattgttg ggctggtagg
    24901 gttgtttgcg gtgacggtga ttcgcgatta tgggcgcgag actgccgccg ccagacaaac
    24961 gctgctggaa aaaggcagtg tacttattcg cgctcttgaa tccggctcgc gcgtcggcat
    25021 ggggatgcgc atgcatcatg cgcagcagca ggccttactg gaagaaatgg ccgggcagcc
    25081 tggagtacgt tggtttgcgg tcacggatga acaaggaaca atcgtgatgc atagcaactc
    25141 cggcatggtg ggaaaacagc tttattcccc gcaggaaatg cagcagttac atccgggaga
    25201 tgaagaagcg tggcggcgga tcgatagcgc agacggtgag cctgttctgg aaatttatcg
    25261 ccagtttcaa ccgatgtttg ctgctggaat gcaccggatg cgccatatgc agcagtatgc
    25321 cgcgacacca caagcaattt tcatcgcttt cgacgccagt aatattgtga gtgccgaaga
    25381 tcgtgagcag agaaacaccc tgattatcct cttcgccctg gcgacggtct tgctggcaag
    25441 cgtattgtca ttcttctggt atcgccgcta tctgcgctcg cgccagcttc tacaagatga
    25501 aatgaagcgc aaagagaagc tggtggcact ggggcatctg gcggcaggcg ttgcccacga
    25561 aatccgtaat ccactttcct caattaaagg gctggcgaaa tactttgccg aacgcgcgcc
    25621 agcaggggga gaagcgcatc aactggcgca ggtgatggcg aaagaagccg accgtttaaa
    25681 ccgcgtggta agcgagttgc tggaactggt taagccaacg catctggctt tgcaggcggt
    25741 ggatctcaac acgctgatta accactcatt acagctggta agccaggatg caaacagccg
    25801 ggagatccag ttacgcttta ccgccaacga cacattaccg gaaattcagg ccgatccgga
    25861 caggctgact caggtcctgt tgaatctcta tctcaatgct attcaggcga ttgttcagca
    25921 tggcgtgatt agcgtgacgg tcagcgaaag cggcgcgggc gtgaaaatca gcgttaccga
    25981 cagcggtaag ggaattgcgg cagatcagct tgaagccatc ttcactccgt acttcaccac
    26041 caaagccgaa ggcaccggat tggggctggc ggtcgtgcat aatattgttg aacaacacgg
    26101 tggtacaatt caggtcgcaa gccaggaggg aaaaggctca acgttcaccc tctggcttcc
    26161 ggtcaatatt acgcgtaagg acccacaagg atgacgcacg ataatatcga tattctggtg
    26221 gtggatgatg acattagcca ctgcactatt ttgcaggctt tactgcgcgg ctggggctat
    26281 aacgtcgcgc tggcgaacag cgggcgacag gcgctggagc aggtgcggga acaggttttt
    26341 gatcttgtgc tttgcgatgt gcgaatggcg gagatggacg gcatcgccac gctgaaagag
    26401 atcaaagcgt taaacccggc aattccggtg ctgattatga ctgcgtactc cagcgtcgag
    26461 acggcggtag aggcactgaa aactggggcg ctggattatc tcatcaagcc gctggatttc
    26521 gataacctac aggcgacgct ggaaaaggcg ctcgcgcata cgcacagtat tgatgctgaa
    26581 acacctgcgg tgactgccag ccagttcggt atggtcggta aaagcccggc gatgcaacac
    26641 ctgctcagtg aaatcgccct cgtcgcgcca tcggaagcca cagtgctgat ccacggcgat
    26701 tccggcaccg gtaaagagct ggtcgccagg gcgattcacg ccagtagcgc acgtagcgaa
    26761 aaaccgctgg taacgctcaa ctgtgcggca ctcaacgaat ccttgctgga atctgaattg
    26821 ttcggtcacg aaaaaggggc gtttactgga gccgataaac gccgggaagg gcgctttgtt
    26881 gaggcggacg gcggcacgct gtttctcgat gaaattggcg atatctcgcc gatgatgcag
    26941 gtgcgtctgc tgcgtgcgat tcaggagcgc gaagttcagc gtgtcggtag caaccagact
    27001 atctcggttg atgtccggct gattgcggcg acccatcgcg atcttgccgc agaggtgaat
    27061 gccgggcgtt ttcgccagga tctctactat cgcctgaatg tggtggcgat tgaagtacca
    27121 tcgctgcggc aacggcggga agatatccct ctgctggctg gccattttct gcagcgcttt
    27181 gccgggcgta atcgcaaggc ggtaaaaggt tttacgcccc aggcgatgga tctgttgatt
    27241 cattacgact ggccgggaaa tattcgtgag ctggaaaacg cggtggaacg ggcagtggtg
    27301 ctgctgccgg ggaatatatt tccgaacgcg agctgccgct ggcgattgcc agtacgccga
    27361 tcccgctggg gcaaagtcag gatattcagc cgctggtgga agtggaaaaa gaggtgattc
    27421 tggcggcact ggagaaaacg ggcggcaaca aaactgaagc cgcccgtcag ttagggatca
    27481 cgcgtaaaac gttattggca aaactgtcgc gttagttctg ctcgcgttcg atagcacgcc
    27541 agccgatatc tttccggcag aagcagtcgt cccagtggat atcggtcatt aaggcatagg
    27601 cgcgtttctg cgcttctgcc acggtatgac ccagcgcggt gacgcacagt acgcgcccgc
    27661 cgttggtcac tacctgctcg tcatccgcca gttttgtgcc cgcgtggaac actttgccgc
    27721 ctgccacttc ttccagcagc aggccgtgga tcacgtcacc ggtgcggtaa tcacccggat
    27781 atccacccgc agccatcacc acgccgagag aagcgcgttc atcccactcg gacgttttct
    27841 cgtccagttt gctttcacag gccgccaggc agagctcaac cagatcggac ttcatgcgca
    27901 gcataatcgg ctgggtttcc ggatcgccaa agcggcagtt aaattcaata accttcggat
    27961 tgccctgttt gtcgatcatc aggcccgcgt agagaaaacc ggtgtaggtg ttgccttccg
    28021 ccgccatgcc tttcacggtt ggccagataa tacgttccat ggtgcgctga tgaacgtcat
    28081 cggttactac cggcgcgggg gagtaagcgc ccatcccgcc ggtgtttggt ccggtatctt
    28141 tatcgcctac gcgtttgtga tcctggctgg tagccatcgg cagcacatgc tcgccgtcca
    28201 ccatcacgat aaagctcgct tcttcgccat cgaggaactc ttcgataacg atgcgatgac
    28261 ccgcgtcgcc aaaagcgttg cccgccagca tatcgtgaac agccgcttcc gcttcttcca
    28321 gcgtcatcgc cacgataacg cctttcccgg cagccagacc gtccgcttta atgacgattg
    28381 gcgcgccttt ctcacgcaga tacgccagcg caggttctac ctcggtgaag ttctggtatt
    28441 ccgccgtagg gatcttatgg cgggccagga aatctttggt aaacgctttt gagccttcca
    28501 gttgggccgc acctgcggtt gggccgaaga ttttcagccc ggcggcgcgg aaggtatcga
    28561 ccacgccttt caccagcggc gcttccgggc cgacgatggt cagatcaatc ttttcgtttt
    28621 gtgcgaaatc caacagcgcc gggatatcgg tcacgccaat agcaacgttt tgcagcgcgg
    28681 gttccagcgc agtgcctgca ttacccggag caacaaaaac agtctcaacc agcggcgact
    28741 gggccgcttt ccaggccagc gcgtgctcgc gcccgccgtt accaatcact aatactttca
    28801 tctattgctc cattaatggc ggaagtggcg catgtcggtg aagagcatcg caataccgtg
    28861 ctcgtcggcg gcggcaatca cttcgtcatc acggatggaa ccgccaggct ggattacgca
    28921 ggtcacgccc gcagcggcgg cggcatcaat accgtcgcgg aacgggaaga acgcgtcaga
    28981 agccatcgag gaacctttca cttccaggcc ttcatcggca gctttaatac cggcgatttt
    29041 cgcggagtac acgcggctca tctggcccgc gccaataccg atggtcatat tgtttttggc
    29101 atagacgata gcattggatt tcacgaactt cgccactttc cagcagaaca gcgcatcgcg
    29161 cagttcctgt tcggtcggct gacgttgggt gacgacgcgc agttcttccg caccgaccat
    29221 ccccaggtca cgatcctgaa ccagcagacc gccgttcacg cgtttgaaat caagacccgg
    29281 aacacgctcg ccccactgac cgcaggtcag aacgcgtacg ttctgcttgg cggcggtgat
    29341 tttcagggct tcttcgctgg cggaaggcgc aataatcact tcgacaaact gacgagaaat
    29401 gatggcctgt gcggtttccg catctagctc gcggttaaag gcaatgatgc cgccgaatgc
    29461 ggaggttggg tcggttttgt acgcgcgatc gtaagcatca agaatggaat tgccgatagc
    29521 tacaccgcaa gggttggcgt gcttcacaat cacacatgcc ggctcggcga actctttcac
    29581 gcactccagc gccgcatcgg tatcggcgat gttgttataa gagagggctt taccctgaac
    29641 ctgggttgcg gtagcaacgg aggcttcttt cacattctct tctatataga aggcagcctg
    29701 ctggtggctg ttctcgccgt aacgcatatc ctgcttctta atgaagttca ggttcagcgt
    29761 gcgtgggaag cgaccggcgg cttctttgct ttcaccgtgg tacgccggaa ccatgctgcc
    29821 gaagtagttg gcaatcatgc tgtcgtaggc ggcagtgtgt tcgaaggctt tgatggcgag
    29881 gtcgaaacgg gttgcaagcg tcagcgatcc ttcgttgtca tccatctctt taataatggc
    29941 gtcgtagtcg ctgctcttca ccacgattgc gacatcttta tggttcttag cggcggagcg
    30001 caccatggtc gggccgccga tatcgatgtt ctcaaccgca tcttccagcg agcagccttc
    30061 acgagcaaca gtctgggcga acggatacag gttaacaacc accatatcga taggctggat
    30121 ctgatgttct tccataatgg catcgtcctg gccgcgacgg cccagaatgc caccatgtac
    30181 tttcggatgc agggtcttca cgcgtccatc catcatctcc gggaaaccgg tgtaatcgga
    30241 aacttcggtt accggcagac ctttttctgc taacagacgg gcagtgcccc ctgtagacag
    30301 cagctccaca ccgcgtgcgg aaagtgcctg ggcgaattcg acgataccgg ctttgtcaga
    30361 aacactgagc agagcgcggc ggactggacg acgttgttgc atggtaaatc ccctggattt
    30421 gactattaca gagagcgtta gctgaatttt tcgcgaaaaa ctcagctaac gcccctaacg
    30481 gggcatcctt atttttcgcc cgcattgtaa cgaaaacgtt tgcgcaacgc tcgcgaattt
    30541 ttctctttca atggtgatca caattttgac agtggctacc gtgggaaaaa tacagaaatt
    30601 acattgatga ttgtggataa ctctgtgcgt aaaaaggtat aaagcggggt tttgctgggg
    30661 aatgcagcag tcagtcattt ttctgcaatt tttctattgc ggcctgcgga gaactcccta
    30721 taatgcacct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    30781 gaagagaaaa accctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    30841 cactcacgac agtgcgctaa agctcgtcgc aactgctctt taacaattta tcagacaatc
    30901 tgtgtgggca ctcgaagata cggattctta acgtc
//
LOCUS       DAJVUY010000030        29922 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.030, whole genome shotgun sequence.
ACCESSION   DAJVUY010000030 DAJVUY010000000
VERSION     DAJVUY010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29922
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.030"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..869)
                     /locus_tag="OQQ72_001245"
                     /pseudo
     CDS             complement(1..869)
                     /locus_tag="OQQ72_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
     gene            complement(844..1644)
                     /gene="otsB"
                     /locus_tag="OQQ72_001246"
                     /pseudo
     CDS             complement(844..1644)
                     /gene="otsB"
                     /locus_tag="OQQ72_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
     gene            complement(1811..2797)
                     /gene="araH"
                     /locus_tag="OQQ72_001247"
     CDS             complement(1811..2797)
                     /gene="araH"
                     /locus_tag="OQQ72_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter permease AraH"
                     /protein_id="HCS2011047.1"
                     /translation="MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPN
                     FATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESL
                     WIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
                     SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVV
                     RTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKI
                     SYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2812..4326)
                     /gene="araG"
                     /locus_tag="OQQ72_001248"
     CDS             complement(2812..4326)
                     /gene="araG"
                     /locus_tag="OQQ72_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter ATP binding protein
                     AraG"
                     /protein_id="HCS2011048.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4396..5384)
                     /gene="araF"
                     /locus_tag="OQQ72_001249"
                     /pseudo
     CDS             complement(4396..5384)
                     /gene="araF"
                     /locus_tag="OQQ72_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416414.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein AraF"
     gene            6098..6601
                     /locus_tag="OQQ72_001250"
     CDS             6098..6601
                     /locus_tag="OQQ72_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HCS2011049.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6680..6931)
                     /locus_tag="OQQ72_001251"
     CDS             complement(6680..6931)
                     /locus_tag="OQQ72_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HCS2011050.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(7046..7132)
                     /gene="azuC"
                     /locus_tag="OQQ72_001252"
     CDS             complement(7046..7132)
                     /gene="azuC"
                     /locus_tag="OQQ72_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HCS2011051.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7394..7717
                     /locus_tag="OQQ72_001253"
     CDS             7394..7717
                     /locus_tag="OQQ72_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecR-like lipofamily protein"
                     /protein_id="HCS2011052.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7888..8385
                     /gene="ftnA"
                     /locus_tag="OQQ72_001254"
     CDS             7888..8385
                     /gene="ftnA"
                     /locus_tag="OQQ72_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HCS2011053.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8423..8662)
                     /locus_tag="OQQ72_001255"
     CDS             complement(8423..8662)
                     /locus_tag="OQQ72_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HCS2011054.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8853..10064
                     /gene="tyrP"
                     /locus_tag="OQQ72_001256"
     CDS             8853..10064
                     /gene="tyrP"
                     /locus_tag="OQQ72_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HCS2011055.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVQSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVR"
     gene            complement(10126..10791)
                     /gene="yecA"
                     /locus_tag="OQQ72_001257"
     CDS             complement(10126..10791)
                     /gene="yecA"
                     /locus_tag="OQQ72_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HCS2011056.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(10987..11073)
                     /locus_tag="OQQ72_001258"
     tRNA            complement(10987..11073)
                     /locus_tag="OQQ72_001258"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11037..11039),aa:Leu,seq:taa)
     gene            complement(11086..11159)
                     /locus_tag="OQQ72_001259"
     tRNA            complement(11086..11159)
                     /locus_tag="OQQ72_001259"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11125..11127),aa:Cys,seq:gca)
     gene            complement(11214..11289)
                     /locus_tag="OQQ72_001260"
     tRNA            complement(11214..11289)
                     /locus_tag="OQQ72_001260"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11254..11256),aa:Gly,seq:gcc)
     gene            complement(11441..11989)
                     /gene="pgsA"
                     /locus_tag="OQQ72_001261"
     CDS             complement(11441..11989)
                     /gene="pgsA"
                     /locus_tag="OQQ72_001261"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HCS2011057.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLLFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(12046..13878)
                     /gene="uvrC"
                     /locus_tag="OQQ72_001262"
     CDS             complement(12046..13878)
                     /gene="uvrC"
                     /locus_tag="OQQ72_001262"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HCS2011058.1"
                     /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEDEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(13875..14531)
                     /gene="uvrY"
                     /locus_tag="OQQ72_001263"
     CDS             complement(13875..14531)
                     /gene="uvrY"
                     /locus_tag="OQQ72_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HCS2011059.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            14826..15002
                     /locus_tag="OQQ72_001264"
     CDS             14826..15002
                     /locus_tag="OQQ72_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011060.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            14989..15213
                     /locus_tag="OQQ72_001265"
     CDS             14989..15213
                     /locus_tag="OQQ72_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HCS2011061.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(15280..16028)
                     /gene="sdiA"
                     /locus_tag="OQQ72_001266"
                     /pseudo
     CDS             complement(15280..16028)
                     /gene="sdiA"
                     /locus_tag="OQQ72_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
     gene            complement(16258..17010)
                     /gene="yecC"
                     /locus_tag="OQQ72_001267"
     CDS             complement(16258..17010)
                     /gene="yecC"
                     /locus_tag="OQQ72_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HCS2011062.1"
                     /translation="MSAIEVKNLVKKFQGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(17007..17675)
                     /gene="tcyL"
                     /locus_tag="OQQ72_001268"
     CDS             complement(17007..17675)
                     /gene="tcyL"
                     /locus_tag="OQQ72_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HCS2011063.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPILSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(17690..18676)
                     /gene="dcyD"
                     /locus_tag="OQQ72_001269"
     CDS             complement(17690..18676)
                     /gene="dcyD"
                     /locus_tag="OQQ72_001269"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HCS2011064.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(18781..19581)
                     /gene="tcyJ"
                     /locus_tag="OQQ72_001270"
     CDS             complement(18781..19581)
                     /gene="tcyJ"
                     /locus_tag="OQQ72_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2011065.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(19669..20220)
                     /gene="fliZ"
                     /locus_tag="OQQ72_001271"
     CDS             complement(19669..20220)
                     /gene="fliZ"
                     /locus_tag="OQQ72_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HCS2011066.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(20266..20985)
                     /gene="fliA"
                     /locus_tag="OQQ72_001272"
     CDS             complement(20266..20985)
                     /gene="fliA"
                     /locus_tag="OQQ72_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HCS2011067.1"
                     /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
                     LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
                     AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV
                     TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE
                     SRVSQLHSQAIKRLSTKLGKL"
     gene            complement(21305..23011)
                     /locus_tag="OQQ72_001273"
     CDS             complement(21305..23011)
                     /locus_tag="OQQ72_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HCS2011068.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRILELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL
                     QG"
     gene            23277..24683
                     /gene="fliD"
                     /locus_tag="OQQ72_001274"
     CDS             23277..24683
                     /gene="fliD"
                     /locus_tag="OQQ72_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HCS2011069.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
                     SVAAKNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK
                     DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
                     SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
                     NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSL
                     NSTSSYLTQQFENNSNSK"
     gene            24708..25118
                     /gene="fliS"
                     /locus_tag="OQQ72_001275"
     CDS             24708..25118
                     /gene="fliS"
                     /locus_tag="OQQ72_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HCS2011070.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            25118..25484
                     /gene="fliT"
                     /locus_tag="OQQ72_001276"
                     /pseudo
     CDS             25118..25484
                     /gene="fliT"
                     /locus_tag="OQQ72_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            25562..27049
                     /gene="amyA"
                     /locus_tag="OQQ72_001277"
     CDS             25562..27049
                     /gene="amyA"
                     /locus_tag="OQQ72_001277"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS2011071.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYNLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(27083..27496)
                     /locus_tag="OQQ72_001278"
     CDS             complement(27083..27496)
                     /locus_tag="OQQ72_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2011072.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLALMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            27683..28888
                     /gene="yedE"
                     /locus_tag="OQQ72_001279"
     CDS             27683..28888
                     /gene="yedE"
                     /locus_tag="OQQ72_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HCS2011073.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            28885..29118
                     /gene="yedF"
                     /locus_tag="OQQ72_001280"
     CDS             28885..29118
                     /gene="yedF"
                     /locus_tag="OQQ72_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HCS2011074.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            29225..29896
                     /locus_tag="OQQ72_001281"
     CDS             29225..29896
                     /locus_tag="OQQ72_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HCS2011075.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
BASE COUNT         7448 a         7677 c         7171 g         7626 t
ORIGIN      
        1 ataacgaatt ttaccatgat gctgcggata tttttccagc aacgcttcat aggcgagaaa
       61 acgctctggc aaacctttgg aataatccag ccgttcgaca gaaaagatat tttgtacgtt
      121 tttcagttcc gctttaagtt gcgccagttt tggcggcagt ggcccggcag cctgtttggc
      181 tatttctttc ggttcaatgc cgatcgggta gacttctgtt cgaaatgctt tgccccaggc
      241 tgtatggctt tttgcgctac gtgtcgtgac gcgggtcagg ttagaaagac aatccaggaa
      301 cgccagacga tcgttttctg tctggaaacc cagcaaatca taatcacaaa gctgttcaag
      361 caaggtgtca tatgtcggca gcgcgttgaa gatttccggt gtcgggaaag gaatatgcag
      421 aaagaaacca atgcgattat tcaccccacg tttgcgtaat tcatgcgcaa agggcaacag
      481 gtgataatcg tggatccaga taatgtcatc gtcttgcaac agcggcagta atttatctgc
      541 cagcaacgca tttacgcgta gatagccgtc ccaggcagga cgctgaaatt gcatcagatc
      601 gagccgataa tgaaaagcgg gccagagaac ggcattggag aattggttgt agtattcgtc
      661 aaggtcctgt tcgctgaggt taaaagaggc ccacgtaatg ttaccttttt tagcggctga
      721 tcctcattcc ctgtttcacc actccagcca aaccacagtc cgcctgtggc tttcagtgcc
      781 cccagtatgc caacggcaag gccaccggca ctggcggcgt gctcgtctgg tggtgcaatc
      841 cggttagata ctacgactaa acgactcata gtcatcactc ctgttatttt ctcttttttg
      901 ttgtaatgcg gtggttatca tttcaagcct gctccagaca tccggcacac ccgccagtcg
      961 ccatgatgcc tgagttgcac ctgtgccaat ttttactgac attccgccca gtcggttaac
     1021 gactgcgaag ccagattcat cggttaaatc atcgcccaga aatacgggcg ttcgcccgat
     1081 aaagggagct tcctgcataa aagctgcaat tgcctcacct ttactggtac ctctcggttt
     1141 gatctcgaca acacactttc cctgctgtaa cgccatttgt ggccagatct gagtaatacg
     1201 ttacgctaat gtcattaatg cgtcttcatg ctgcggagcc tgacgataat gcagcgcaaa
     1261 agccatccct ttcgcctcca gctccgcgcc gggatactga gcgataactg tatgcagttg
     1321 cacgctaata tcacgcgcaa tcgcatccgg cagatgaacg atatgcgttt taccattgat
     1381 gtcacggcgc tccgccccat gcacgcccgc taacgggaag cgataaggtt ttgccagtgc
     1441 gtcaagctcc accattgagc gccctgatat caatgccaat gcaccatcac ttgcggttgc
     1501 cagtagctgt agtccttgca gaatattgtc aggcacgacg acctgatcgg gatgcggttt
     1561 gatttccgcc agcgttccat cgagatcaaa aaaccaggca tatttcgcgg atagttcagg
     1621 ggtttcggtt aacggttctg tcacccggtt ctcctacttc tcttttctta ttgttttgcg
     1681 cagaacgcgc tttacagaca tgtaagtata gacagtgtga cgggggtcgc catttgcaac
     1741 gaagaacagc caaccgttat ggcggttggc tgtggtggga aaaaacgcta aattgttgca
     1801 gaaaaaagca tcagacagtg cgtttcgctt tttgcttgta acggtcgaag atcaccgctg
     1861 ccagcaggat taagccgcga accacgtact gcgcgaaagg agaaatatta agcaggttca
     1921 tggcgttttc cacggtgcct aaaattaaga tacccgccac cacatatgag atttttccga
     1981 tgcctccttt cagagaaacg ccacctaaaa cgcaggcgga gataacaatc agctcgtaac
     2041 caatcgacgt cattggctgc ccactggtca tacgtgaagc cagaataatt ccggctatcg
     2101 cagataccag gccagagaga acaaagataa taattttggt gcgaacaacc ggtacacccg
     2161 ccagacgcgc agcctcttcg ttcccgccaa tcgccagggt gttacgacca aaggtggttt
     2221 tattcagcaa caaaccaaag ataatcagac acgcgacggt gagccagatt ggcgcaggca
     2281 gaccgaacca gttagcgtaa ccaagggcaa agaagctttc atcttcgata ccgaccgctt
     2341 taccgtctga aatgatgtac gccagacctc gaacaatctg catcgttgcc agtgttgtga
     2401 tcagagcatt tattttcagt ttggcgataa caaagccatt gaccaggcca cagagaatgc
     2461 caagcagcaa ccccgctgcc acgccaatcc acaggctttc agtcaggttg ataaccaccg
     2521 ccgtggtgac acccgcacag gcaattacgg aggcgacaga aaggtcaaag tcaccggaag
     2581 caaggcagaa caacatgcca cacgccacca tccccgacat ggaaattgcc aggcccaacc
     2641 ctttcatatt aatgaaggtg gcaaaatttg ggacaaaaat ggcacaggcg ataaagagca
     2701 ccgcaaacac caccagcatg ccgtactgat cccagatacg cccgaagctg aatgacgact
     2761 taggtgcgcc agaacccgat gtagaaacag aagacatcat actctcctta ctcaggcaac
     2821 tgcctggctg actttaggca tcgcaaggct cagtgcctga cgctcatctg cctgctcgtg
     2881 taacaattca ccggcgattt caccttcccg catcaccaca atccggtcgg caacgccgag
     2941 gacttcaggt aagtcgctgg aggcaaacag caccgccaca ccctgcgccg ccagcgcata
     3001 aattacgtta tatatttcgt gcttagcacc aacatcaatg ccgcgcgtag gttcatccag
     3061 caaaatgacc ttcatctctt ccgataacca gcggcccaga atggcttttt gctgatttcc
     3121 gcctgagaga ttcatgatca gttgctcagc gcccggcgtt ttgatgttga gcgaacgaat
     3181 gtgctgatcg gcattgtttt cttcccaacc gttgttgatt acacaaccgc cgagcacatg
     3241 tttgcgtctg gcactgatgt tgatattgtc gcgaacggag tgcacgggaa taatgccttc
     3301 cgctttgcga tcttccgggc agagcatcat gcctgcggca atggcgtggc tcggtttacg
     3361 aatatcgatc ggctgttggt cgatataaac ctgaccggcg gtgatttgcg tcccgccaaa
     3421 caagcctttc attaattcgc tacgccccgc ccctaccaga ccaaacagcc caacaatttc
     3481 accactgcga accgccagac ttattggcgt acgcacgcct ggtgctttca cagcatcaag
     3541 acgcaggcgc tcctcgccat aactacgagg ttgccagccg tagatatcgc caatgtcgcg
     3601 cccgaccatc gcctgcacca gcgcgtcgtg gtcaacctgc tgcatatcgg taaaggtttt
     3661 gacataacgt ccatctttaa agacagtgat ggcatcgctg agggcaaata tttcttccat
     3721 acggtgagaa acgtataaga tcacccgccc ctcttttcgc agttcacgaa taacgcggaa
     3781 aagattgtcg atttcgcggg cagaaaggga gctggttggc tcatcaaagg cgataatttt
     3841 agcgttacgc gccagcgcct tggcgatttc aaccatctgc cactgaccaa tggagagata
     3901 tttcagcggc gtgtccgggt caatatccat accaagatgt ttaagttgta aacccgcctc
     3961 ataattcagc aatgagcgat tcacaatgcc gcctttatgc ggcagctggc cgagatagat
     4021 gttttccgcg acggtcattt ccggcacgag atgcagttcc tggtaaataa tcgccacacc
     4081 cgcgttaagt gctgcggtcg tgtcggaaaa ggacatttcc tgcccattaa tcactacaga
     4141 acccgtggtt ggcgcatagt tgccgctgag gatttttaag agagttgatt ttcctgcgcc
     4201 attttcaccc atcaacgcat gaacctgacc ggcatagcag tcaaaactaa tatccgtcag
     4261 cgccttaacg ccgggaaacg ttttaccgat gccgcgaaat gagagatacg gggtagactg
     4321 ttgcataacg tctccgtgaa tcactggtcg ttcacacccc ctctgcatca tgcagagggg
     4381 aatttttccg gcaaattact taccgcctaa accttttttc tccagttctt ctttaaagtt
     4441 gtcacgcgtg atcagcacca cgtcggtaac ttcggtaaat tttggcggtt caacgtcttt
     4501 tgctacccag ttgtaaagca tttcgctgga tttatagcca tgtacgtccg ggcttggcag
     4561 cagggaaccg tagaagccgg ttgcctgtac tttagacagt tcgctcaccg catccacacc
     4621 gttaatgcca atgccgataa tatcggcagc tttaaagccc tgaccttccg tcgcgcgtac
     4681 gccgcccagc acggtgctgt cgttcatacc gacgatcagc caatgtttaa cttcaggatg
     4741 ttgaaccagc attgagttgg cagcgtcaaa tgcccccggg atgtcgttag atttggtagg
     4801 tacctgataa atttgttttt ccgggaatcc ggccgctttc agcgcatcca tagatcccgt
     4861 agtacggcgg cgggcagtat ccagttcgtt ggcggtaatc accatcaccg cgctttcttt
     4921 gacatcccag ccacgtttct gcatctcttt atacagttcc tgaccctgac gttcgccaat
     4981 tttagtcgcg ccatcatcac cagcggaacg gtatccattg gcttaccttt ggcgttaaca
     5041 aactgatcat ccacggcaat gactttcata tcgtagccac gcgctttcgc gacgatggca
     5101 gagccgagtt tggggtccgg agtacaaata acgaaacctt ttgcgccact ggcagccagg
     5161 ctgtcgatcg cgttcaatgt tttttcgcca tccggcacgg caatcttaat aacctcaaac
     5221 cctaaatcct tcccggcttt atcggcaaac ttccattcgg tctggaacca cggctcttcc
     5281 ggttgcttca ccagaaaacc gagcttcagg ttctccgcca tagcggattg tgacataacg
     5341 gctgccagac caatggctgc cagggcttta gtaaatttgt gcatggttct ctccagcttt
     5401 agtgtcgttt tgtgtagggc aaaaacgaat gacattcgtt aaattaatcg gaaaacaaag
     5461 cattaccttt taactaaaag ataagtgacc gtgttgacat agttttagcg agaaattaat
     5521 tctccatagg agagcaatat cacatcgcag aattacagtg agaacgtgca taaatttagc
     5581 gggaaaagac ataagggaaa gccaatttgt cagacaaatt gtcgaatgca cagcagatta
     5641 atccataaga ttagcttgga aatccttgtt gtctttggta cccatgcggg atgtcttctt
     5701 tttaaccagt caataggccg cattacctgg cgttgagttt ttgaaatggt gtaataaccg
     5761 caactcaaag atgtggaaaa tgcacgtcat tcatttcgcc attaattatc actgtgctca
     5821 ttaattaaca gaacacgtat aatgagagcc atctcgcaaa aatgaaaaaa cgttttataa
     5881 aatcatcatt tcatcaatga aatgtaaaaa tatataaact tgatgattta agcatttttt
     5941 tatacccgtt cagacgttat tcttatttca gatcatcgtc agaattgact ccacgatcac
     6001 atttcggacc ggcagaaagg aattattctg caaacagtaa ttatggtgtt ttgatttatc
     6061 ttgcacctct ccacttctgg atataaggat attaggtatg gcaaccgctg gaatgcttct
     6121 caaactcaac tctcaaatga accgcgagtt ttacgcatcc aatctctacc ttcacctgag
     6181 taactggtgt tctgaacaga gtctgaacgg caccgccact ttccttcgcg cccaggcaca
     6241 gagtaatgtg acccaaatga tgcgcatgtt taactttatg aagagtgtcg gcgctacccc
     6301 catcgttaaa gccattgatg ttcccggtga aaaactgaac tctctggaag aactgttcca
     6361 aaaaacgatg gaagaatacg agcaacgttc tagtacgttg gcacagttag ccgatgaagc
     6421 gaaagaactg aatgatgatt caaccgtcaa tttcctgcgc gatctggaaa aagaacagca
     6481 gcatgatggt ctgttgctgc aaaccattct tgatgaagtg cgcagtgcga aacttgctgg
     6541 tatgtgccca gtgcagaccg accaacatgt tctgaatgtc gtgtcgcatc agctgcattg
     6601 atcatacatc ggcgctaatg cattgcgccg atgaagtttt tgagaaaccg ctgcctcatc
     6661 tttttgaagc agcggttttt taatgggatt cgccttgtgg ggtaaacttg agttcaatca
     6721 gcgcgatggc tttttggatt gcccgcatgg tgaccgggtc tgcggcggcg ggatggttac
     6781 taaagtcgat attcttcagc tgactggaca ttttttcacg aacttcaacg ggcgcgatta
     6841 catcgagaac atccagaatt tgtttgataa ccaactggca agcaaccaca tcagaaacca
     6901 gttcctgatc ggcattcagc ggctgggaca tcgtaaactc ctgatagcat tttgaaagcc
     6961 gttatagtag cggcttcaca tcttcagcga tagtcacatc caccgtcatc aggacacaaa
     7021 aaaacctgcc ggagcaggtt ttttgttatc ggaacatatt gcctggcggt acgtctttga
     7081 acgtcttgca atagttattg aacatacttt tcaggatttt gcgcagtttc atcgcggcac
     7141 tccgaccatt tgttatacat gtgttatttt ctttgtgctt ataatatgac aaccatcaca
     7201 aaaatcaatc tttatgtgat gcaaatcaca caaatacccc cttaatgtta taaaaatgat
     7261 aatcaaaaaa cagcccccca tttctgacac ctacagatgg caagaaatag cgcctgccag
     7321 gcgtcttttc cggtcattgt cgcagcgctg taacgcgtaa aatagtgctt tcttttactc
     7381 ttctggctgg accatgagac ttctgattct gactctttca ttaataacgc tggcggggtg
     7441 tacggttact cgccaggccc atgtgagcga agttgacgcg gcaacaggta ttgtacggtt
     7501 ggtttatgac caggcttttt tgcagcatgc ccataccgat cgttatgtca gtcgcgggat
     7561 cgccgatcgc gcatgccagc aggaaggcta tacccacgcg atcccctttg gtcagccagt
     7621 aggcaactgt agcctttttg cgggttcctt atgtttgaat acggaattca ctttgtcata
     7681 tcagtgccat cattccgcct tccctgtctt tctctaaata ttttaatcag cgaggggatc
     7741 ttcgctgatt aaaaaaatag cggtaatgcg ttttattccc attcgtattt ttaataattg
     7801 aagtttatat tttacctttt gcaaataata aaataacaaa ttatagtgac gccacagcaa
     7861 caaatataac ctttgtggag cactatcatg ctgaaaccag aaatgattga aaaacttaat
     7921 gagcagatga acctggaact gtactcttca ctgctttatc agcaaatgag cgcctggtgc
     7981 agctatcata ccttcgaagg tgctgccgcg ttcctgcgcc gtcacgccca agaagagatg
     8041 acgcatatgc agcatctgtt tgattacctg actgataccg gcaatttacc gcgtattaat
     8101 accgttgaat ctccgtttgc tgaatattcc tcacttgatg aattattcca ggaaacctat
     8161 aaacacgaac aattaatcac ccagaaaatt aacgaactgg ctcatgctgc aatgaccaat
     8221 caggactacc caacatttaa tttcctgcaa tggtatgttt ctgagcagca tgaagaagag
     8281 aaactgttca aatcgattat tgataaatta agcctggcag gcaaaagcgg cgaaggtctg
     8341 tattttatcg acaaagaact ctctaccctc gacacacaaa actaatactc tccggcggca
     8401 ggtttactgc cgccgtttca aatcagtgac ggcaaatctt actctgatcg gtcgaaaaac
     8461 cgtctttcga aggtataaat ttgccttttg ctgccagaaa cgctaccagc tctcccgctg
     8521 tcatcccttc tgccgagcag gtgtgaaaac gtgcctgttc accaaaacgc gctttaattg
     8581 ctgcttccag actggcatgc gtatattgct cgcctgattc aatcatcata tttaacactt
     8641 catgaccgtg aatagagtcc atcgttcctc ctcaaaaaaa gcctagcgta gcgattgccg
     8701 cttatgaaga ctttgcgcca gagcagaact gaatgctttt tattgtacat ttatatttac
     8761 accacatgta acgtcggttt gacgaagcag ccgttatgcc ttaacctgcg ccgcagatat
     8821 cactcataaa gatcgtcagg acagaagaaa gcgtgaaaaa cagaactctg ggaagtgttt
     8881 ttatcgtggc gggaaccaca attggcgcag gcatgctggc aatgccgctg gctgcggcag
     8941 gtgttggttt tagcgtcacg ttaatcttgt tgattgggct ttgggcgttg atgtgctaca
     9001 cggcgctatt actgctggag gtgtaccagc atgttccggc agataccggt ctgggcacgc
     9061 tggcaaaacg ctatctggga cgctacggtc aatggctgac gggcttcagt atgatgttct
     9121 taatgtatgc tctgactgcg gcatacatca gcggtgccgg tgaattgttg gcctccagca
     9181 tcagcgactg gacaggtatt tcaatgtcgg caaccgctgg cgtgctgttg ttcacttttg
     9241 ttgccggtgg cgtggtttgt gttggaacat cgctggtcga tttatttaac cgttttctgt
     9301 tcagcgccaa aattattttt ctggtggtga tgctggtatt gctgctaccg catattcaca
     9361 aagtgaatct tttaaccctg ccgttgcaac aggggctggc tctgtcagca atcccggtga
     9421 tttttacctc atttggtttt cacggtagcg tgcagagtat tgtcagctat atggatggca
     9481 acgttcgtaa gctacgcagg gtgtttataa ccggtagtgc gatccccctg gtggcatata
     9541 ttttctggca ggtggcaacg cttggcagca ttgattcaac aacctttatg ggattgctgg
     9601 ctaatcatgc tggattaaac gggctgttac aggcgttacg cgaaatggtg gcctctccgc
     9661 atgttgagct ggcagtgcat ttatttgctg atttagccct cgccacgtca tttctcggcg
     9721 ttgcgttagg cttatttgat tatctggctg atttatttca gcgttcaaat accgttggtg
     9781 gacggttgca aactggtgca attacctttc tgccgccgtt ggcgtttgca ctgttttatc
     9841 cacgaggatt tgtgatggcg ctgggttacg ccggtgtggc gctggcggta ctggcattga
     9901 ttatcccttc gctgttgacc tggcaaagca gaaagcacaa tcctcaggcg ggttaccggg
     9961 tcaaaggtgg tcgtccggcg ctggtggtgg tgtttctctg tggtattgct gtgattggcg
    10021 tgcaattttt gattgcggca gggttgttac cagaagtgag gtgatcagat agcctcaaat
    10081 tccttattgg gtgccagaat taacgctgac acccaatttg gcctcttaat gcaggcagca
    10141 ctgcttaaat ttcttaccac taccgcacgg gcaaggatcg ttacgccccg gtttctcttc
    10201 tgctttgatc ggttgctgaa cagctttttc ctgcggatgc gccatccagt acgcatgtag
    10261 atcaagcgcc gccagtcgaa tggcatctac gctctcttca aacgcttctg gcgacatctt
    10321 ttctacccgc tcgaagtttt cctcagtacc gtgcagcgca atcgcctcca gcgctggttt
    10381 taacgaatcg ggcaacgttg accagtcaga aagtgccacg ccccgcatat agccaaagca
    10441 ccactcctca acaatcgtca gctcgctgcc atcaacttct cgcaagccga ataacggctc
    10501 aaactgctcc gggaattcgt tcagacgctc tgcggtatcg gccatatgtt gaaaagccag
    10561 gttcataaag cgcgtcatct ctttctctga cgcccagcgc ggcacatagt cagccccacc
    10621 ccacacggca accagccact gttccggttc aatctcttgc ggagaactca acaccgccgt
    10681 caataaatcg tccagctccg ccacatcaag gatggcgtgg ttagtgttgt atttggtcag
    10741 aatatcgtcc agccattcca actcactttc gtttaacggt cccgttttca tacgcttttc
    10801 cttgtggatc tcaactcgcc agcacctatc ttacatgccg gtccgtatca gagatacttt
    10861 ttgagtggct ttgccggtga ttaaaaatta aggagggtgt aacgacaagt tgcaggcaca
    10921 aaaaaaccac ccgaaggtgg tttcacgaca ctgcttattg ctttgatttt attcttatct
    10981 ttcccatggt acccggagcg ggacttgaac ccgcacagcg cgaacgccga gggattttaa
    11041 atcccttgtg tctaccgatt ccaccatccg ggctcgggaa gaaagtggag gcgcgttccg
    11101 gagtcgaacc ggactagacg gatttgcaat ccgctacata accgctttgt taacgcgcca
    11161 aattcttcag gcctttcagc cagacatccg cttgacgccg atgtctttta aactggagcg
    11221 ggaaacgaga ctcgaactcg cgaccccgac cttggcaagg tcgggctcta ccaactgagc
    11281 tattcccgca ttcattaagc aatcagttaa tcacttgatt ttattatcgt ctggcaatca
    11341 gtgccgccgt tcgatgcgtt gcattctact tacctggcgc gatgagtcaa cgatattttt
    11401 caccactttt gatcgtttgc tgaaaattac gccgaaacga tcactgatca agcaaatctg
    11461 cacgcgcagc gctcaaatat tgcaacattg accacagagt cagcaccgca gccacaaaga
    11521 aaagtgcaat accggcgtac tcaacccaaa tgttcggacg ccacagcagc caggccaacg
    11581 ccaccatctg ggcagtggtt ttcactttcc caatccagga gacagccacg ctactgcgtt
    11641 tacccaactc cgccatccat tcgcgtagcg cagaaataat aatttcacgg gcgatcatcg
    11701 ttgccgccgg tagggtcacc caccagctgt gataatgctc ggttaccagc accatggcga
    11761 tagccacgag aactttatct gctacagggt caaggaaagc accaaaccgg gtactctggt
    11821 tccagcggcg tgccagaaaa ccatcgaacc agtcagtcac cgccgcgacg cagaaaatga
    11881 gcgcggcggc aaacggcgac caggtgacag gcagataaaa gagcaataca aagaatggga
    11941 taaggatgac acggaacagt gtaagcaacg tagggatatt aaattgcata atgacgggta
    12001 actatctgtt gtcagtaaga ttacccctat gttgctacag agacatcaat gtttcaacga
    12061 ccagaagatc ttttctgcca gaccttgcga aatacccggc acttttgcaa tttcctcgac
    12121 gctggcgtta cgtaaacctt gcaaaccgcc catatatttc aacaacattt gccgacgttt
    12181 tggcccgacg ccttcaatgg tttccaggga actggtattt ttgaccttcg cccgtttttt
    12241 acggtgcccg ccaatcgcgt gatcatgtga ttcatcgcga atatgctgga taacatgcag
    12301 cgcgggtgaa tctggcggca aactaaatcc ctcatcttcc ggctcaaaga acagcgtttc
    12361 cagtccagcc ttacgatctg ctcctttggc aacgccaagt agcagcggat gatttttatc
    12421 ccatgagaca tccagttcgg cgaagacatt tttcgcctgc gcaagctggc ctttgccgcc
    12481 gtcgataagg atcacatccg ggatcttact gtcgtcaatg gctttaccat aacgccgacg
    12541 cagcacctga ttcatcgccg cataatcatc gcccggcgtg atgcctgtaa tgttatagcg
    12601 ccgatactcc gcacgcagcg ggccgttagc atcaaacacc acacaggaag cgacggtttg
    12661 ttcgcccatg gtatggctga tgtcaaagca ctccatccgc ttcacttccg gcaatttcaa
    12721 cacgctggca agcgcggtca gtcgctggtg aacggtagat tgctgcgaaa gtttgctggt
    12781 taaggccgtc gccgcattgg tgcgcgcgag tttcagataa cgcgccctat cgccgcgagg
    12841 tttggtttga acattaatct tgcgtcccgc cagttctgaa agggaatcgg cgagcagcgt
    12901 tttatcgcta agattaaaat cgagcaggat ctcacccggt aaggtgcgca tctggctgcc
    12961 ttgtaaatag aactgaccta cgaaggtttc taccacctcg ctcagttccg taccgccagg
    13021 cactttcggg aaatagctgc ggctgccgag cactttgccc tgacgaatga acaatacgtg
    13081 gacacaagcc atgcccgcat cgaacgccac accaataacg tcaaggtcgt cgccggtatt
    13141 ggaaacaaac tgtttttcgg tgacgcgtcg caccgcctga atttggtcgc gaatacgtgc
    13201 cgcttcttca aactccagat tctgactggc agtttccata cggctaatga gttgcgtaag
    13261 cacctgatca tctttgccag acaaaaacag gcgcacatac tcgacctgct gagcgtattc
    13321 ttcttcactc accagtcctt caacgcacgg tcccagacag cgccctatct gatattgcag
    13381 acacggacgc gagcgattgc gataaacact attttcgcac tggcgaatgg ggaaaatctt
    13441 ttgcagtagc gccagagttt cacgtacggc atagccattc gggaacgggc cgaaatattc
    13501 acctttggca tgcttcgcac cacgatgcat cgccagacgc gggtgggtat cgccactcag
    13561 gaagataaaa ggataagatt tatcatcgcg tagcaaaacg ttgtaacgcg gctgatagag
    13621 tttgatgtag ttgtgttcca gcaacagcgc ttcggtttct gtatgagtaa ccgttacatc
    13681 aatttgctga atctgggcga ccagcgcttc ggttttgcgc gaagcgaggt tgctacggaa
    13741 atagctggaa agccgttttt tcaggtcttt cgctttgccg acatagataa ccgtaccacc
    13801 agcatcgtac atgcgataaa cgcctggctg gctggttacg gtttttaaaa acgcttttgc
    13861 gtcaaactga tcactcactg acttgataat gtctccgcat tacacagacc atggcgaatt
    13921 gccaggtgag tcagctcaac atcgccatga atgtttagtt tactgaacat acgatagcgg
    13981 tagctgttca ccgttttcgg actgagattg agctgttctg agatctcatt gaccttctgg
    14041 cccttggtga tcatcagcat aatctgcaat tcacgttcag acaaactggc aaatgggctt
    14101 tctgtttttt ctggttcgat ctggcttaac gccatttgtt gagcgatgtc agaagcaatg
    14161 taacgctgcc ctgaatagac agaacgaatc gcactcacga cttcctgcgg agccgcgcct
    14221 ttgctgaggt agcccgcagc accggcctgc atgactttcg ctggtaaagg gttttctgta
    14281 tgaacggtaa gcatgatgat tttgacatca gctgtggaac gcgcgatttt acgcgtcgcc
    14341 tcaagaccgc caatgcccgg catactcatg tccattagca ccacgtcaac ggcatttgtc
    14401 cggcaccact taacggcgtc ttcaccgcac gatgcctcac cgacgacttt tatacccttt
    14461 atatcttcca gaatgcgtcg tatccctgcg cgcaccagtt cgtggtcatc aacaagtaga
    14521 acgttgatca aagaaatatc tccagaaata gggataacgc tactgatagt tagtcattcg
    14581 tatattagcg gtttttattg caactttgaa acgttaaaaa tggtgggtat tcgatttttc
    14641 tctcgttttt gtcaattcga ttgtccacag ttatggtcac gcccgtcacc aacggcttac
    14701 cggatcgttt cacagtaagc cctacgatga aatgtgacaa aaattgactt tattcagcaa
    14761 aaatgaaaat cagcccgctg aatatgtaac attaattaac ccgaacaata cgggcaaaaa
    14821 cattcatgat aaaaatattt attggtcatt atattaacgt attttatagc actgccgata
    14881 tcacgctcaa aaaacaacca ctgctatttt tagcaaagct tatggtatac tccgccgcct
    14941 taacattttt caccgcaaat tttcattgca acatgacgag gaaaataaat gagtacgcct
    15001 gatttttcta ctgccgagaa taatcaagaa ctggcaaatg aagtctcctg cctgaaagcg
    15061 atgctgacgc tgatgctgca ggcgatggga caagctgacg cgggccgcgt gatgttaaag
    15121 atggaaaaac agcttgcgct gatcgaagac gaaacccagg ctgcagtatt ttccaaaacg
    15181 gttaagcaaa ttaaacaagc ctaccgtcag taatataaaa ccggctgaga gcgtgccttt
    15241 cagccggttt ttgcatctgg cacgcagaaa gaaaagcgat caaattaagc cagtagcggc
    15301 cgcgtaacag gccacctggg tcttatttgg tgcattgatt tttttctgca tgtttttctg
    15361 atggaaattg accgtattct cagagattga caaaatcatc gctatctctg ctgatgtctt
    15421 cccttccgcc gtccatttca gaatttcttt ttcgcgcttg ctgaaattca tctctggcgt
    15481 catcactatt tcatcattta aacgcatcag agccatcaga ctttcgcgca ccagtaactg
    15541 catttttaat tgcagttcat cactaagaat gggtatttcg cgtgtgctgc aacgggaaaa
    15601 ggacaaaaag cccagcgccc gatttggcag cattaaatac tgagtgacac cgcggcgtaa
    15661 accatgtgcg tgcgcggctt cccataatgg ctgtgcttcg ctgaataagt catcattcca
    15721 cattaaatgg ccctgactaa agttttcagg gttcagcaca ggatcaattg cgagaaaatt
    15781 agcacaggat caattgcgag aaaatttttt gcctgataat aactaaccca cgactcaggg
    15841 taattggtgt agaaagccac tttaggtcgc gtgaatggta ccgggtggcg aacacataac
    15901 gaatagtaat cgtactccag ctgctgagcc tgaagctcta tttcatggta gacctcttct
    15961 gcggcctcca tcctctgaaa acgcaacagc atcgtgcgac gccaactgaa aaaatccgta
    16021 tcctgcatag taaaccgcaa cgcccctgag agtgagtatc atttataatg ataattcaaa
    16081 ctatcacata aataagattt atatataatt tatattattc aggcaatgaa ttacttttgc
    16141 aagccatcgc attctcttat gttattaatg agttatgctg atttgttaag cagttttatc
    16201 acgcttgaaa tggcgtcccg ccccgacagg tgaatcgtcg gggctgattt tttcttatta
    16261 ttgcagcaga aacttctcga ggaactgtcg ggtgcgaggc tgctggggat cggcaaataa
    16321 cgcttttgct gccccctgct cgactatccg ccccaggtcc ataaaaatcg cccggtccgc
    16381 aacatcccgg gcaaagctca tttcgtgcgt cacaatcacc atcgtgcgct tttcctgcgc
    16441 cagctggcgg attgtgttca ggacttcgcc caccagctct ggatccagcg ctgacgttgg
    16501 ctcgtcaaac aaaatcacct caggacgcat tgccagcgca cgcgcaatcg ctacacgctg
    16561 ctgttgaccg ccagacaaac gacgtggata gctggtttct ttaccggcca gcccaacttt
    16621 cgccagcagc tcgcgagcgc gcgccgtggc ctcttctttc ggttcgcctt tgacgatcac
    16681 cggcccttca ataatgtttt ccagcaccgt acgatgcgga aacaaattaa agttctggaa
    16741 gacaaacccg acgtgctgac gcaactggcg aatcagcgat ttttgctgac ttaatgaacg
    16801 tgcagtatca atagtgatat cgccaacggt gatcgttccc gcttccggtt gttccagcag
    16861 atttatgctg cgtagcaacg tggttttgcc ggaaccactc ggaccgataa ttgccaccac
    16921 ttcgccaggc tttacctcga ggtcgatacc gtgcagcacc gtctgacctt ggaatttttt
    16981 caccaggttc ttaacttcaa tggcactcat ttgggttctc tctcctggcg attaagttga
    17041 ttctcaaaat ggttctgcaa cgtcgataac acagtcgcca tgatccagta gatgagcgaa
    17101 gccgccaggt acatggtgaa cacctccagc gtgcgcgagg taatcaactg cgcctgacgg
    17161 aacagctccg gcacctggat tgtcgcggcc agcgacgtat cttttaccag actgataaag
    17221 ctgttcgaca gcggcggcaa cgccacccgc gccgcctgtg gcaaaatcgc gcgacgcatg
    17281 gtctgccacg gcgtcatacc aatactggca gcggcttccc actgaccttt atcaatagaa
    17341 gaaatggcgg cgcgcagcgt ttcggcggca taggcggcag tgttcagcga cagaccaatc
    17401 attgctgaca gaatgggatc taattcgata ccaaactgcg gcaggccgta atagatcata
    17461 aacagttgtg cgatgagcgg cgtaccacga aaaatagaga tataaaaacg cgccagccag
    17521 cgcacgggcc agattggcga caggcgcatc agcgcgagaa taaacccgag tagtaagcca
    17581 aaaaacatgc cgccgatact gagttgcagg gtatacccag cccctttcaa caggaacggc
    17641 aaggaatcaa taaccagttg tatactttct tgcatgagcg ttcccggagc taaacgtggg
    17701 gatgataggc gaacagcgca ggcgcgccgc cggtatgaat aaacagaatc ggcccttcat
    17761 ctttgaagcg tttctgactg ataccgtcaa tcagccccgc catcgctttt ccggtataca
    17821 caggatcaag cagaatgcct tccagacgcg ccagcaattt cactgcttcc atgccttcgt
    17881 cgttcggcac gccgtagcca ggtgcaaaat agtcatccca gagtaaaatt tccgctgatg
    17941 cggtcagctc cagttctttc gcaatcgcct gttgtaggtt aaccactttc ggcaattgat
    18001 cggcaacgga acgcgacacg gtcacgccaa tcagttcgct ttcaggcatc aggtgttcca
    18061 gcccaacagc caatccggcg tgagttccgg cactgcccga tgcgaccacc accgacgaaa
    18121 tattaaccgc cccttcacac tgttgcgcga tttccagcgc actctccaca taacccagcg
    18181 cgcccagagc attagaaccg ccaaccggaa tgacatacgg gcgaaagcct tgtgcttcga
    18241 ctcgcgtcgc cagctcttcc agttgggcat tgggatcggt cagtgcgtcg cacatttcaa
    18301 tctgggtatt gaacagattc agcaacaaac gattgccgtt ggttaaatag ttttctgcgg
    18361 ttgtgccaat aggattttcc agcagcgcca cgcagtgcag gccgagtttc gccgcaactg
    18421 cggcagtctg ccgcacatgg ttagactgga tcgcgccggc agtaatcagc gtatcggcac
    18481 cttcgcgcag ggcatctgcc gcgagaaatt ccagcttacg taatttattg ccgcccattg
    18541 ccatgggtgt gacgtcatcc cgtttgatga aaatttcccg tccaagataa tcagaaaagc
    18601 gcggcagata ttcgagcggc gttggcgcgc cgataaactc cagccgtgga aaacgggtta
    18661 aattatgcag tggcataata gcctccgatg tgtgttgttg tgattttctt attatgcacg
    18721 ctgaaaacgc gtaaataaaa aaggcgctag tgaaagcgcc cttttttgtc attatgctga
    18781 ttatttggtc acatcagcac caaaccattt ttcggaaagg gcttgcagag tgccatcttt
    18841 ttgcatttcc gcaattgcat cgttcactgc tttcagcagg tcttcatttc ctttacgcag
    18901 cgccacgcca gactcctgac gggagaatgc ttcaccggtt actgccagcg tatcgttggt
    18961 tttcttcacc agatccagcg ccgccagacg gtcaacgagg atcgcatcga tacggcctac
    19021 gcgcagatcc tgatatttgg tcgggtcatc atcataggta cgcacatcga cgccctgaac
    19081 attctgccgc agccactctt catagttggt gcccagaccg acacccactt ttttgccttt
    19141 cagatcagca gccgttttaa tggtgccttc gttacctttt ttcaccagcg cctgaatacc
    19201 agaaatggtg tacggggtag agaaatcgta ttttttcttg cgctcatcag aaatggtgac
    19261 ctgattaatc accacatcaa tacgtttaga gtccagcgac gctagcatac cgtcccattt
    19321 ggtcggtttt agtgacgcct caacgccaag atgttttgcc agctgttggg caaattccac
    19381 ttcaaaaccg gttaatttgc cgtcatcccc ctgaaaactg aacggcggat aagttccttc
    19441 cagccctacc agtagcgtac cgcgctcttt gactttatta agcagacctt catctgcaaa
    19501 acttttaacg ctcatgcccg caaccagcgc cacggccatc acacccatca atgcctgacg
    19561 tcccagatgt gctaatttca tattcacccc gaatgttgtt atgtctgttt gcagtgtaga
    19621 gccattgttt gtaaacacaa aaacaactcc gctacatctt attcttattt aatatatatc
    19681 agaagcaggc aggctggagg atttctgcac aagtccggta cacgtttgac gctgatagtg
    19741 ttgatacttc cgtaatgcga tgcggtaatt gttggtgctg gtggtgggca gccacggggc
    19801 gaggatttca tcaaggaaac cgtcctgcag ctgatcgagg gaaatatttt gctcatgtag
    19861 atgattcccc aaacggcgca aacgaacgac atattcacgc accgtacctg ggctcatttc
    19921 agtttgctca aaaagaaatt gcttaaagcc gataatatcg aaaaaatcac tctgcgtttt
    19981 gcaatgtaaa tcaccgcaaa atcggcacaa tgccgcccat gactgttgtt ccacttgcca
    20041 gccattttca tcaagcagcg tgtccaggcg ggaaatctcg attttattca ctattttgcc
    20101 gtcgcgaact aaggtaatgc gatcgagtaa tttacggcaa tgcgcgcaat gggcctggct
    20161 gtgtttaaag tctttaagat agcggcttaa tggccgtctt ttcaggtgct gcaccatcat
    20221 taagaactcc tggtagtcaa agttaaagtg cggcatttac tgacgttata acttacccag
    20281 tttagtgctt aaccgtttaa tggcctggct gtgtaactga ctgacccgcg attccccgac
    20341 ctccagcacc gcgccaatct ctttgagatt cagctcttcc tggtaataga gggttaatac
    20401 cagtttttcg cgctccggca acgtttcgat agcttccatc acccgctggc gcagattact
    20461 gtccagcagt tgttgtagcg ggttttctcg ctgatgatca tcagtaacca gttcgatgct
    20521 atcgccgtgc tcttcgcgcc actcatcgta ggagaaaagc tggctgttat tggtgtcgag
    20581 caacatttgg cgataatcgg caatatcgat ccctaaacgt tccgctacct cagtttccgt
    20641 ggcgttgcgg ccaagttcct gctccagttg ccctattgcc tgtgccactt cacgcgcgtt
    20701 gcgtcgcacg ctgcgcggca cccagtcacg gctgcgaagt tcatccagca tagcgccacg
    20761 gatacgctgc actgcgtaag ttgtaaatgc cgttccttgt agggcgtcat agcgttcgac
    20821 ggcattaagt aacccaatgc cgcccgcctg tagcagatcg tcaagttcca cgctcgcggg
    20881 cagtcgaacc tgcaggcgca atgcttcgtg acgcaccagc gggacataac gctgccacag
    20941 cgagtgttta tccattacac cttcagcggt atagagtgaa ttcacgataa acagccctgc
    21001 gttatatgag ttatcggcat gattatccgt ttctgcaggg tttttaatcg gacgattagt
    21061 gggtgaaatg aggggttatt tgggggttac cggtaaattc catgcagaaa aaaccccgcc
    21121 ggtggcgggg aagcacgttg ctgacaaatt gcgctttatg ttgccggatg cggcgtaaac
    21181 gccttatccg gcctacaaaa atgtgcaaat tcaataaatt gcaattcacc ttgtaggcct
    21241 gataagtgca gcgcatcagg caatttggcg ttgccgtcag tctcagttaa tcaggttacg
    21301 acgattaacc ctgcagcaga gacagaacct gctgcggtac ctggttggct tttgccagca
    21361 cggagttacc ggcctgctgg atgatctgcg ctttcgacat gttggacact tcggtcgcat
    21421 agtcggcgtc ctgaatacgg gactgcgctt cagacaggtt ggtagtggtg ttgttcaggt
    21481 tggtgactgc agaatccaga cggttctgaa tagcacccag ggatgaacgg aatttgtcga
    21541 tggagctgat agcttcatcc agggcagcca gaggatcttt ggttgcagtg cctgcactgg
    21601 tggtttcagt ggtcagtttg cctgtagagt taacataagc ctgtgcccca acagtagctg
    21661 caaatttacc agttgcacct gcgccatttg aagctacagt tactgtaccg gtatccttat
    21721 cgacgttgta gttgatagtg taagatgcgg ttgtggtgag ctctttgtct gcatcagtat
    21781 aggtgtcatt cgaattacca gcaccattag tattcgcacc accgaaggac gccgttgcag
    21841 actgaatacc tgtattatac ttaattgtcg caccagtaac tgctgtgtta gccgttgcag
    21901 cactctgcac tgtgctcagt acagtatcag cgcttacagt tttggtgtag gttacgccag
    21961 aagttgccgc tgcaccaaag ttataagttg tgccagacaa ctggatagaa ccagttgtcg
    22021 ctaaggtact accgctagca aacagatcgg acaatttcgc tgaagatgca atgccggcgt
    22081 tgtttgtaga taggttacca gtggcgtcca ggtacgcggc tttaccaccg atggtcacat
    22141 cgccattagc atctacatca aacttcacat caccagtact acgagtataa acacctgatg
    22201 cagtagtgcc agccgctggt ttcagagtat tcgcaaagtt aacaacatcg ccatctgcaa
    22261 ctgttgcttg agtggtgaag ttccctttag ccgcatcata agtatagatc gcagcactcg
    22321 agccagtagt agtaactgta tctccggttt tcaggcgaga cagtgcatcg ctagcgctga
    22381 gtgctgtatt gtttgtggtc acagcataag gacctgttcc cgttgcacca gcagcggtca
    22441 gatcgctgac tgtagcagct ttgttcgcaa tagtgccttt gccattcacg ttaaaaccat
    22501 tcagccccag cgtatctgag tcaattttct tcagatcaat cgtgatagtc tggccgtcat
    22561 tcgcaccaac ctgaattttc attgaaccgt ctttcgccag tacgttcacg ccgttgaact
    22621 gggtctggcc agatacgcgg tcaatttcgt ccagacggga tttgatttcg tcctgaatgg
    22681 agtccagatc cgaatcggag ttagtcccgg tagaagcctg aaccgtcagt tcaagaatac
    22741 gctgtaagtt gttgttgatt tcggacagcg cgccttcagt ggtctgcgca acggagatac
    22801 cgtcgttggc gttacgggcc gcctgagtca ggcctttaat attagaagta aaacggttag
    22861 caatcgcctg acctgcggcg tcatccttcg cgctgttaat acgcaagcca gaagacagac
    22921 gctcgataga actcgacagc gcagactggt tcttgttgat attattttga gtgatcagcg
    22981 agaggctgtt ggtattaatg acttgtgcca tgattcgtta tcctatattg caagtcgttg
    23041 attacgtatt gggtttccac ccgtcggctc aatcgccgtc aaccctgtta tcgtctgtcg
    23101 taaaacaacc tttagaattt ttttcacaaa cagccatttt ttgttagtcg ccgaaatact
    23161 cttttctctg ccccttattc ccgctattaa aaaaaacaat taaacgtaaa ctttgcgcaa
    23221 ttcaggccaa taaccccggt attcgtttta cgtgtcgaaa gataaaagga aatcgcatgg
    23281 caagtatttc atcgctggga gtcgggtcag gtctggattt aagttcaatc cttgatagcc
    23341 tcaccgccgc gcaaaaagcg acgctaaccc ctatttcaaa tcagcaatcg tcgtttaccg
    23401 ctaaacttag cgcctacggt acgctgaaaa gcgcgctgac gactttccag accgccaata
    23461 ctgcattgtc taaagccgat cttttttccg ccaccagcac taccagcagc accaccgcgt
    23521 tcagtgccac cactgcgggt aacgccatcg ccgggaaata caccatcagc gtcacccatc
    23581 tggcgcaggc gcaaaccctg accacgcgca ccaccagaga tgatacgaaa acggcgatcg
    23641 ccaccagcga cagcaaactc accattcaac aaggcggcga caaagatccg attaccattg
    23701 atatcagcgc ggctaactca tcgttaagcg ggatccgtga tgctatcaac aacgcaaaag
    23761 cgggcgtaag tgcgagcatc attaacgtgg gtaacggtga atatcgtctg tcagtcacat
    23821 caaatgacac cggccttgat aatgcgatga cactctcggt cagcggtgat gatgcgctac
    23881 aaagttttat gggctatgac gccagtgcca gcagcaacgg tatggaggtc tcggtcgccg
    23941 ccaagaatgc gcagctgacg gtcaacaacg tcgccattga gaacagcagc aacaccatca
    24001 gcgacgcgct ggaaaacatc accctgaacc tgaacgatgt caccacgggc aaccagacgc
    24061 taaccatcac tcaggacacc tccaaagcgc aaacggcgat taaagactgg gtgaatgcct
    24121 ataactcgtt aatagatacc ttcagtagcc tgaccaaata caccgccgta gatgcgggag
    24181 ctgatagcca gagttctagc aatggcgcac tgctcggcga ctccacgctg cggacgattc
    24241 agacgcagtt gaagtcgatg ctgagtaata ccgtcagttc ttccagctat aaaacgctgg
    24301 cgcagattgg tatcacgacc gatcccagcg atggcaaact ggaactggat gccgacaaac
    24361 tcaccgctgc actgaaaaaa gatgccagcg gcgtaggtgc attgattgtt ggcgatggta
    24421 aaaaaaccgg catcacgacc accatcggca gcaacctgac cagttggctt tcgacaacgg
    24481 gcattattaa agccgctacc gatggcgtta gtaagaccct gaataagtta actaaagact
    24541 acaacgccgc cagcgatcgc attgatgcgc aggtcgcgcg ctacaaaaaa caatttaccc
    24601 aactggacgt tttaatgacc tcgttaaaca gcaccagcag ctacttaacg cagcagttcg
    24661 aaaacaacag taattccaag taatcattat tcatcgggag acaggtcatg tacgcggcaa
    24721 aaggcaccca ggcctatgca caaattggcg tcgaaagcgc cgtaatgagc gccagccagc
    24781 agcagctggt caccatgcta tttgatggag tgctgagcgc actggttaga gcgcgcctgt
    24841 ttatgcagga caacaatcag caaggcaaag gcgtctcttt gtcaaaagcg atcaacatca
    24901 ttgagaacgg actgcgggtg agtcttgatg aagagagcaa agacgaacta acccaaaact
    24961 tgattgctct ttatagctat atggtcaggc gcttgctgca agccaattta cgcaacgatg
    25021 tctccgcagt cgaagaagtg gaagcattaa tgcgcaatat tgccgatgcc tggaaagagt
    25081 cgttactctc cccttctttg attcaggacc cagtctgatg aaccatgcac cgcatttgta
    25141 tttcgcctgg caacaactcg tcgaaaaaag ccagctcatg ttacgcctgg caacggaaga
    25201 acaatgggac gaactcatcg ccagcgaaat ggcgtatgtg aatgcggtgc aggagtatag
    25261 cacacctgac tgaagaggtt gccccgtcca ccacgatgca ggagcagctc cgcccgatgc
    25321 tgcgcctgat tctcgacaac gaaagcaagg taaagcagtt attacagatt cgtatggatg
    25381 aactggcgaa actggtcggt cagtcatcgg tgcaaaaatc ggtgttaagt gcctatggcg
    25441 atcagggcgg ctttgtgctg gctccgcaag ataacttctc gtgaatctta acgagctaat
    25501 ggttcgcgaa taatccgatt acggctacgc ttctaatgtt ccccttgaat ggagtcgaag
    25561 aatgcgtaat cccacgctgt tacaatgttt tcactggtat tacccggaag gcggtaagct
    25621 ctggcctgaa ctggccgagc gcgccgacgg ttttaatgat attggtatca atatggtctg
    25681 gttgccgccc gcctataaag gcgcatcggg cgggtattcg gtcggctacg actcctataa
    25741 tttatttgat ttaggcgagt ttgatcagaa aggcagcatc cctactaaat atggcgataa
    25801 agtacaattg ctggccgcca ttgacgccct gaaacgtaat gacattgcgg tgctgttgga
    25861 cgtggtagtc aaccacaaaa tgggcgcgga tgaaaaagaa gctattcgcg tgcagcgtgt
    25921 aaatgctgac gaccgtacgc aaattgatga agaaatcatt gagtgcgaag gctggacgcg
    25981 ttacaccttc cccgcccgtg ccgggcaata ctcacagttt atctgggatt tcaaatgttt
    26041 tagcggtatc gaccatatcg aaaaccctga tgaagatggc atatttaaaa ttgttaacga
    26101 ctacaccggc gaaggctgga acgatcaggt tgatgatgaa ttaggtaatt tcgattatct
    26161 gatgggcgag aatatcgatt ttcgcaatca tgccgtgacg gaagagatta aatactgggc
    26221 gcgctgggtg atggaacaaa cgcaatgcga cggttttcgt cttgatgcgg tcaaacatat
    26281 tccggcgtgg ttttataaag agtggatcga acacgtacag gaagttgcgc caaagccgct
    26341 gtttattgtg gcggagtact ggtcgcatga agtcgataaa ctgcaaacgt atattgatca
    26401 ggtggaaggc aaaaccatgc tgttcgatgc gccgctgcag atgaaattcc atgaagcatc
    26461 gcgcatgggg cgcgactacg acatgacgca gattttcacg ggtacattag tggaagccga
    26521 tcctttccac gccgtgacgc tcgttgccaa tcacgacacc caaccgttgc aagccctcga
    26581 agcgccggtc gaaccgtggt ttaaaccgct ggcgtatgcc ttaattttgt tgcgggaaaa
    26641 tggcgttcct tcggtattct atccggacct ctacggtgcg cattacgaag atgtcggtgg
    26701 tgacgggcaa acctatccga tagatatgcc aataatcgaa cagcttgatg agttaattct
    26761 cgcccgtcag cgtttcgccc acggtgtaca gacgttattt ttcgaccatc cgaactgcat
    26821 tgcctttagc cgcagtggca ccgacgaata tcccggctgc gtggtggtca tgtcgaacgg
    26881 ggatgatggc gaaaaaacca ttcatctggg agagaattac ggcaataaaa cctggcgtga
    26941 ttttctgggg aaccggcaag agagcgtaat aaccgacgaa cacggcgaag caaccttctt
    27001 ttgcaacggc ggcagcgtca gcgtgtgggt tatcgaagag gtgatttaaa ttcatccccg
    27061 gcggcaagcc ggggagattt cattacggca gtggcgtcgg taacggcgct ttatccagcg
    27121 cggcggcaca ctctgccgtc gggcgatcca cacgctccat cgtcatacca tcgtactcaa
    27181 tggtgttacc gtcacgctca acctcgtaca gctcacgttt tacggtaacg ttagtgagat
    27241 catcagacat caatgccaac ttacccggca cagcaatcac ccgctgccac tgacggcaat
    27301 ccagagtatc accctcttta gtgacaatca ggctgcctat cgcttccgga ctgaccagcg
    27361 cacgttgcgg ccctttggtc tgccagtagc ccgccagcca gtccggcgcg ggggttttca
    27421 cgacattgtt atagttttcg acttcggcac agcccgccag caacatgagc gcgcctgcaa
    27481 ttgcgagttt tttcatcatt cgtcctgcat gagaagaaaa gaggattgtg gcattaaagc
    27541 cctgatgtcg ccagcctttc caggttcaga gagaaatttg atctaactat tatttttgtg
    27601 aattattacc ccgaaaataa atttgcatga tgtatgattc gcgactcttg tttcaaacct
    27661 tctgagttca gaggctacat tcatgtcatg gcagcaattc aaacacgcct ggttgattaa
    27721 attctgggca cccatccctg cggtcatcgc ggcgggtatt ctctccactt actattttgg
    27781 cattactggc accttttggg ctgtcacggg tgaatttacc cgttggggcg gccagctcct
    27841 gcagctgttt ggcgtccatg ctgaagagtg gggttatttt aaaattatcc atctggaagg
    27901 atcgccatta acccgcatcg acgggatgat gatcctcggc atgtttggcg gctgctttgc
    27961 cgcagcgctg tgggccaaca atgtcaaact gcgcatgcca cgcagccgta tccgcattat
    28021 gcaggccatt attggcggta ttatcgctgg ttttggcgcg cgtctggcaa tgggctgtaa
    28081 cctggcggcg ttctttaccg gtattcctca gttctcgctg catgcctggt tctttgccat
    28141 cgccactgcc attggttcat ggtttggcgc acgctttacc ctgctgccca tcttccgtat
    28201 tcccgtgaaa atgcagaaag tttctgccgc ctcaccgctg acgcaaaaac cggatcaggc
    28261 gcggcgtcgt tttcgtctcg ggatgctggt ctttttcggt atgctgggct gggcgctgct
    28321 cacggcgatg aaccaaccaa aactggggct ggcaatgctg tttggcgtcg gctttggttt
    28381 actgattgaa cgtgcgcaaa tctgctttac ttcggcgttc cgcgatatgt ggatcaccgg
    28441 acgtacccat atggcgaaag caatcattat cggtatggcg gtgagtgcca tcgggatctt
    28501 cagttacgta cagttaggcg ttgaacccaa aatcatgtgg gcgggaccaa acgcggtaat
    28561 tggtggttta ctgtttggtt ttggcatcgt gctggcaggc ggctgcgaaa ccggctggat
    28621 gtaccgcgcg gtagaaggcc aggtgcacta ctggtgggtc ggtctgggca atgtgatcgg
    28681 ctcgacgatt ctggcgtatt actgggatga tttcgctccg gcgctggcca ccgactggga
    28741 caaaatcaac ctgctgaaaa cctttggccc gatgggtggc ctgctggtga catatttgct
    28801 gttgtttact gcgctgatgt tgattatcgg ctgggaaaaa cgcttcttcc gccgtgcggc
    28861 accgcagact gctaaggaga tcgcatgaaa aatatcgttc ctgattaccg ccttgatatg
    28921 gtgggtgaac cctgccctta tccggcagtc gcaacccttg aggcgatgcc gcagttaaaa
    28981 aaaggggaaa tcctggaagt ggtgagcgac tgtccacagt cgatcaataa tattccactg
    29041 gatgcgcgta atcacggcta tacggtgcgg gatattcagc aagacgggcc gaccattcgt
    29101 tatttaattc agaagtaatc cctcattccc gctgtggccc acagcgggaa catcgttgcc
    29161 tctgacacat agattttacc cgccccctct cctattcttt tcagtatgat ctcaggaggt
    29221 ttctatgtgt ggacgctttg cccaatccca aacgcgtgaa gattaccttg cgcttctcgc
    29281 ggaagatatt gaacgcgata ttccctacga tcccgaaccc attggcagat acaacgtcgc
    29341 gccgggaacc aaagttcttc tgctcagtga acgtgatgaa caccttcatc tggatccggt
    29401 tttctgggga tatgctcccg gatggtggga taaaccgccg ctgattaacg cccgcgtaga
    29461 aactgccgca accagtcgca tgtttaaacc gctctggcaa catggtcggg caatctgttt
    29521 tgccgatggc tggtttgagt ggaaaaaaga aggcgacaaa aaacagcctt tttttatcta
    29581 tcgtgctgat ggacaaccta tttttatggc cgcgataggt agcacaccat ttgagcatgg
    29641 tgacgaagcc gaaggatttt taattgtcac tgctgcagca gaccagggtc tggtagacat
    29701 tcatgaccgc cgcccgctgg ttctgtcgcc agaagctgca caggaatgga tgcggcaaga
    29761 gattggcggt aaagaagcat cagaaattgc taccaacggc tgtgtgccag caaaccagtt
    29821 cacctggcac ccggtatcgc gcgcggtagg taatgtcaaa aaccagggcg cggagttaat
    29881 tcaacctgtt tgttgacatc ctccacgccc tgaaggacga gg
//
LOCUS       DAJVUY010000031        29254 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.031, whole genome shotgun sequence.
ACCESSION   DAJVUY010000031 DAJVUY010000000
VERSION     DAJVUY010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29254
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.031"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..157
                     /locus_tag="OQQ72_001282"
     CDS             <1..157
                     /locus_tag="OQQ72_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HCS2011076.1"
                     /translation="INYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELT
                     LVKSFDW"
     gene            432..3281
                     /gene="rcsC"
                     /locus_tag="OQQ72_001283"
     CDS             432..3281
                     /gene="rcsC"
                     /locus_tag="OQQ72_001283"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HCS2011077.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGEPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3481..4131)
                     /gene="rcsB"
                     /locus_tag="OQQ72_001284"
     CDS             complement(3481..4131)
                     /gene="rcsB"
                     /locus_tag="OQQ72_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HCS2011078.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4148..6820)
                     /gene="rcsD"
                     /locus_tag="OQQ72_001285"
     CDS             complement(4148..6820)
                     /gene="rcsD"
                     /locus_tag="OQQ72_001285"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HCS2011079.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL
                     EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST
                     LPLKDLTSGFKESTISDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT
                     FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNS
                     TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS
                     SRSTESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL
                     NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ
                     AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE
                     IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD
                     RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH
                     FPFINQPQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE
                     VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP
                     SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG
                     GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG
                     KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7559..8689
                     /gene="ompC"
                     /locus_tag="OQQ72_001286"
     CDS             7559..8689
                     /gene="ompC"
                     /locus_tag="OQQ72_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HCS2011080.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINSRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8801..9856
                     /gene="apbE"
                     /locus_tag="OQQ72_001287"
     CDS             8801..9856
                     /gene="apbE"
                     /locus_tag="OQQ72_001287"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HCS2011081.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GINGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9930..10982
                     /gene="ada"
                     /locus_tag="OQQ72_001288"
     CDS             9930..10982
                     /gene="ada"
                     /locus_tag="OQQ72_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HCS2011082.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVLANAIGKPKAVRAVASACAANKLAIVIPCHRVVGGDGTLSGYRWGV
                     SRKAQLLRREAENEER"
     gene            10982..11632
                     /gene="alkB"
                     /locus_tag="OQQ72_001289"
     CDS             10982..11632
                     /gene="alkB"
                     /locus_tag="OQQ72_001289"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HCS2011083.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTIHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFYPLTTDCRYNLTFRQAGKKE"
     gene            11708..13351
                     /gene="yojI"
                     /locus_tag="OQQ72_001290"
     CDS             11708..13351
                     /gene="yojI"
                     /locus_tag="OQQ72_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HCS2011084.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLMAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13569..15215
                     /gene="mqo"
                     /locus_tag="OQQ72_001291"
     CDS             13569..15215
                     /gene="mqo"
                     /locus_tag="OQQ72_001291"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HCS2011085.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15365..15853)
                     /gene="eco"
                     /locus_tag="OQQ72_001292"
     CDS             complement(15365..15853)
                     /gene="eco"
                     /locus_tag="OQQ72_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HCS2011086.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            complement(15988..16152)
                     /locus_tag="OQQ72_001293"
     CDS             complement(15988..16152)
                     /locus_tag="OQQ72_001293"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011087.1"
                     /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKHIYIAINSPEI
                     FLLVCSLIRI"
     gene            16261..16755
                     /gene="napF"
                     /locus_tag="OQQ72_001294"
     CDS             16261..16755
                     /gene="napF"
                     /locus_tag="OQQ72_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HCS2011088.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16745..17008
                     /gene="napD"
                     /locus_tag="OQQ72_001295"
     CDS             16745..17008
                     /gene="napD"
                     /locus_tag="OQQ72_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HCS2011089.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            17005..19491
                     /gene="napA"
                     /locus_tag="OQQ72_001296"
     CDS             17005..19491
                     /gene="napA"
                     /locus_tag="OQQ72_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HCS2011090.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTQDATDPLSKETDFKKCAVKLEKV"
     gene            19498..20193
                     /gene="napG"
                     /locus_tag="OQQ72_001297"
     CDS             19498..20193
                     /gene="napG"
                     /locus_tag="OQQ72_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HCS2011091.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20180..21043
                     /gene="napH"
                     /locus_tag="OQQ72_001298"
     CDS             20180..21043
                     /gene="napH"
                     /locus_tag="OQQ72_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HCS2011092.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            21040..21489
                     /gene="napB"
                     /locus_tag="OQQ72_001299"
     CDS             21040..21489
                     /gene="napB"
                     /locus_tag="OQQ72_001299"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HCS2011093.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21499..22101
                     /gene="napC"
                     /locus_tag="OQQ72_001300"
     CDS             21499..22101
                     /gene="napC"
                     /locus_tag="OQQ72_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HCS2011094.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22120..22737
                     /gene="ccmA"
                     /locus_tag="OQQ72_001301"
     CDS             22120..22737
                     /gene="ccmA"
                     /locus_tag="OQQ72_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HCS2011095.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22734..23396
                     /gene="ccmB"
                     /locus_tag="OQQ72_001302"
     CDS             22734..23396
                     /gene="ccmB"
                     /locus_tag="OQQ72_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HCS2011096.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23438..24175
                     /gene="ccmC"
                     /locus_tag="OQQ72_001303"
     CDS             23438..24175
                     /gene="ccmC"
                     /locus_tag="OQQ72_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HCS2011097.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24172..24381
                     /gene="ccmD"
                     /locus_tag="OQQ72_001304"
     CDS             24172..24381
                     /gene="ccmD"
                     /locus_tag="OQQ72_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HCS2011098.1"
                     /translation="MTLAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24378..24857
                     /gene="ccmE"
                     /locus_tag="OQQ72_001305"
     CDS             24378..24857
                     /gene="ccmE"
                     /locus_tag="OQQ72_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HCS2011099.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24854..26797
                     /gene="ccmF"
                     /locus_tag="OQQ72_001306"
     CDS             24854..26797
                     /gene="ccmF"
                     /locus_tag="OQQ72_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis heme lyase CcmF"
                     /protein_id="HCS2011100.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26794..27351
                     /gene="dsbE"
                     /locus_tag="OQQ72_001307"
     CDS             26794..27351
                     /gene="dsbE"
                     /locus_tag="OQQ72_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HCS2011101.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27348..28400
                     /gene="ccmH"
                     /locus_tag="OQQ72_001308"
     CDS             27348..28400
                     /gene="ccmH"
                     /locus_tag="OQQ72_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis thiol:disulfide
                     oxidoreductase CcmH"
                     /protein_id="HCS2011102.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28435..29082)
                     /gene="narP"
                     /locus_tag="OQQ72_001309"
     CDS             complement(28435..29082)
                     /gene="narP"
                     /locus_tag="OQQ72_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HCS2011103.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPSFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6681 a         7219 c         8104 g         7250 t
ORIGIN      
        1 tatcaactac tatggtgggc gcagcgaaac ggaattaacc accgcccaac tgacgctgat
       61 caccgatgaa ggatcggtca atgagaaaca ggaaacattt attgtaccga tgcgtaatgc
      121 tggcgagctg acgctggtga aaagttttga ctggtgatcc atcccttcac acaacctggc
      181 tctctctttt ttcagataag actgctgggc gatctgccga cgccaggata taaccattaa
      241 caagcgtcgg cagattggtc atttcttatt tttcgtactg agaactgtcc atctactccg
      301 gctttcctgg ttaaggcaat ggtttctaag cgatacgcat tattgcaata atgacagaac
      361 attgcggtaa cacgctttta ccgctacctt aaccacactc catcggtcac ctgaggcgga
      421 gcttcgcccc tttgaaatac cttgcttctt ttcgtacaac cctgaaagcc tcgcgctaca
      481 tgttcagagc attggcgtta gtgctctggc tgttgattgc tttttcatcc gttttttaca
      541 tcgttaatgc gttacatcag cgagaatcgg aaattcgtca ggaatttaat ctgagttccg
      601 atcaggctca gcgctttatt caacgcacct ctgatgtgat gaaagagctg aagtacatcg
      661 ccgaaaatcg cttatcggca gaaaacggtg tgctttcccc gcgtggacga gaaacgcagg
      721 cggatgtgcc tgcgtttgaa ccgctgtttg ccgactccga ttgttccgca atgagtaaca
      781 cctggcgagg ttctctggag tcattggcgt ggtttatgcg ctactggcgc gataattttt
      841 ctgcggctta cgatctaaac cgggtatttt taatcggcag cgataacctc tgcatggcca
      901 atttcggtct gcgtgatatg ccagtggaac gcgataccgc gttgaaagct ttgcatgaac
      961 gcatcaataa atatcgaaat gcaccacaag atgatagcgg cagtaacctc tactggatca
     1021 gcgaaggtcc gcgccctggc gtcgggtatt tttacgcgtt gacgccagtt tatctggcga
     1081 accggttgca ggcgcttttg ggggtcgagc agaccatccg gatggagaac tttttcttac
     1141 cgggtacgtt gccgatgggg gttaccattc ttgatgaaaa tggtcatacc ctgatttcgc
     1201 ttaccggacc agaaagtaaa attaagggcg agcctcgctg gatgcaggaa cgctcctggt
     1261 ttggctatac ggaagggttc cgggagctgg tgctgaagaa aaatctgcca ccctcatcgc
     1321 taagcatcgt gtattcggtg ccggttgata aggtgctgga acgcattcgc atgttgatcc
     1381 ttaacgcaat tttgctgaat gtgcttgccg gagctgcatt gtttactctc gcacggatgt
     1441 acgagcgacg tattttcatt ccggcggaaa gcgacgccct gcgactggaa gaacatgagc
     1501 agttcaatcg caagattgtc gcctccgcgc cagtgggtat ctgcattttg cgtaccgctg
     1561 atggcgtcaa tattttaagt aacgaactgg cgcataccta tctcaatatg cttacgcatg
     1621 aggaccgcca acgactgacg caaattatct gtgggcagca ggtcaatttt gttgatgtcc
     1681 tgaccagcaa caataccaat ctgcaaatca gcttcgtcca ttcgcgctat cgtaatgaaa
     1741 acgtggccat ttgtgtgctg gtggatgttt cttcgcgcgt gaagatggaa gagtcgttgc
     1801 aggagatggc acaagcagcg gaacaggcga gccagtcaaa atcgatgttc cttgccactg
     1861 tcagtcatga gctgcgaacg ccgctgtatg gcattatcgg taacctggat ctgttgcaaa
     1921 ccaaagagtt accgaaaggc gtcgatcggc tggtgacggc aatgaacaac tcttccagcc
     1981 tgttgttgaa aattatcagc gatattctcg atttctcgaa gattgaatcg gaacagttga
     2041 agatcgaacc gcgtgagttt tcaccgcgtg aagtgatgaa ccacatcacc gccaactatt
     2101 taccgctggt ggtacgcaag cagttaggct tgtactgctt tattgaaccg gatgtgccag
     2161 tggccttaaa tggcgacccg atgcgtttac agcaggtcat ctccaacctg ttgagtaacg
     2221 ccataaaatt caccgatacc ggctgtatag ttttgcatgt ccgcgctgat ggcgattatc
     2281 tctctatccg tgttcgcgat accggcgtgg ggattccggc gaaagaagtg gtgcgcttgt
     2341 ttgatccctt cttccaggtc ggaacgggcg tacagcgaaa cttccagggg accggtctgg
     2401 gtctggcgat ttgtgaaaaa ctgatcagca tgatggacgg cgatatctcg gtagattcag
     2461 aaccgggaat gggcagccag tttaccgtgc gtattccgtt gtacggcgct cagtacccgc
     2521 agaaaaaagg cgtggaaggg ttgagtggta aacgctgctg gctggcggtc cgcaatgcgt
     2581 cgctctgtca gttcctggaa actagtttgc agcgcagcgg catcgtcgtt acaacatacg
     2641 aagggcagga accgactccc gaagatgtgt taattactga cgaggtagtg agtaaaaaat
     2701 ggcagggtag agcggtagtg accttctgtc gtcgccatat tggtattccg ctggagaaag
     2761 cgccagggga gtgggtacac agtgtggctg ccccgcatga gctaccggca ttgttggcgc
     2821 gtatttattt gatcgagatg gagagcgacg atcctgctaa cgctctgccg tcgacggaca
     2881 aagcggtcag cgataatgac gatatgatga ttctggtcgt ggatgatcat ccgattaacc
     2941 gacgtctgct ggcagatcag ttgggatcgt tgggctatca atgtaaaacc gcgaatgatg
     3001 gtgtcgatgc gcttaatgta cttagcaaga atcatattga tatcgtgctt agcgacgtca
     3061 acatgccaaa tatggatggt taccgcttga cgcaacgcat tcgtcagttg ggactgacgt
     3121 tgccggtaat cggagtaact gctaatgcgt tggctgaaga gaagcagcgg tgtctggagt
     3181 ccggtatgga cagctgcctg tcgaagccgg taacgctgga tgtgataaaa cagacgctga
     3241 cggtatatgc cgagagggtc aggaaatcgc gggaatcgta ggacggataa ggtgtttatg
     3301 tcgcatctgg cattcagtgc aaatgccaga tgcgacgctg acgcgtctta tctggcctac
     3361 tttgatgtaa tctgttgaaa taatgggaat cgtaggacgc ataaggcgtt tacgccgcat
     3421 ccggcaatcg gtgcaaatgc cagataagac actaacgcgt cttatctggc ctacaggtga
     3481 ttagtcttta tctgccggac ttaacgtcac tgaagagaga taattcagca gggcgatatc
     3541 gttctcgaca cccagcttca tcatcgcaga tttcttctgg ctactgatgg ttttaatact
     3601 gcggttcagc tttttagcga tctcggtcac caagaagcct tccgcaaaca ggcgcagaac
     3661 ttcactctct tttggcgaga gacgcttgtc accgtaacca ccagcactga ttttttccaa
     3721 caggcgagaa acgctttccg gggtaaattt cttccctttc tgcagcgcgg cgagagcttt
     3781 cggcagatcg gtcggtgcac cttgtttcag cacgatccct tcgatatcca gatccaatac
     3841 cgcactaaga atcgccgggt tgttgttcat agtcagaaca atgatcgaca ggcttgggaa
     3901 atggcgcttg atgtacttga ttaaggtaat gccatcgccg tacttatcgc caggcatgga
     3961 gagatcggta atcaacacat gcgcatccag tttcggcagg ttgttgatca gtgctgtaga
     4021 gtcttcaaat tcgccgacaa cattcaccca ctcaatttgc tcaagtgatt tgcgaatacc
     4081 gaacaagact atcggatggt catcggcaat aattacgttc atattgttca tgtaataggc
     4141 taccttgcta cagcaagctc ttgacataac tgtcaatgtc gctgatgtat ttttctattc
     4201 ctggaacatc cttctcacga atcagatgtt ccagcgtttc acataactgc ttgccgggta
     4261 ccagatttag catggcaaat acgcctttaa gacgatgagc cgtttgggct aacgcagcaa
     4321 agtcactggt tgctgcttca gtatacagcc tcttaacatc atccggtact gtgtctacaa
     4381 agagcgcata atagccgctg gcatggagtt gcgcattttc atctccgccc agaggcgatt
     4441 ctgtcacctc ttcctgcgcc agttgcactt caattaattg taagaccgct tcctgcatag
     4501 cgttgctcat attgaagttg acgcacaatt gaccaggccc aatttcccgt acgccagact
     4561 catcatcgct taaaagcaag ccagaggcag taagattaga cggattatcc gttaaaaaga
     4621 tatcataatc ttgactaatt aatctttcat cgggtgtgat acaggttgca ccccaatttt
     4681 ctaactggcg agtgacaata ttccgaattt ctgccgaagt aacatccacc attacgcaga
     4741 catcatccag taaacgctct tcttcctctt caacttccgg gtcagcggcg agcattttga
     4801 tatgcacaga gtagcgtgta ccaagcccat cccgcgtttt gatgtttaaa tgaccgccca
     4861 gtttacgcgc cagttgatcg ctcagccaga atgccagcgg gtccgccttg ccatagcgat
     4921 cgttttgggg ctggttgata aacgggaagt gcaaattatc catttcatga atacttacgc
     4981 cttctcccgt gtccagaatg cggaatgtca ggcggtcttc agaggactca tcctgatcaa
     5041 cctcaagggt gatttttccc aattgcgttg aggtcacggc atattgcatc agtagcagca
     5101 aaatacgtcg taaggcatcg cgatcgccgc ggcgcatatc gtgtgctttc agatgattgt
     5161 taatcagcag ttgcagacct ttacgcttga tggcaggcaa cactgaaggc acaacttcat
     5221 caattaaatc ctgcacggag aacagcaccg tctcactttt ccagctatcg tccgcaagca
     5281 tgttcgctaa ctgtatttca tcgaccagcc gcaccagcac atctgcctga ttcgccagtt
     5341 gtttgctttc cggggcgttg agtttagccg cgctctccgc cagggactgt gcgggttctt
     5401 tcagcgcatc gccaatgttt ttcataaagg tcatccgccc ctgctggttt ttctcataca
     5461 gacgctgcgc ctgcttgagt ttcttgttta ccagcacttc gcgatcctga tcgcgaataa
     5521 tgaaaatttg tgtgcgcggc gcgacctggc tgcggaacat gcggatctca tacagctcgt
     5581 tattgatcgt cgcctgaata atcccctgat gctgttccgc catggtggtg atgttttgca
     5641 gattcaaatg cggcagcaaa tgatcggcaa ttttgttact tatgacagtg cggttcgatt
     5701 cctgatcgtg aaccagcagg ccgagcggca gcagtgagac tatctcttca ttaattgccc
     5761 gtaaaatgcg caattcgtta ttgaccgccg tgctgggtag actttctgta ctgcggctgg
     5821 agaaatggcg gaatgtggta tagccaaata acgccagcgc cagcaaaccg atgttcagca
     5881 gcagtggcag cagaatgttt tgcaacgtat ccagcaataa ggtgccataa ggaacctgcc
     5941 agaccaggcg catatcggta gagttgagtg ccgaggagat ttcaatcttc gtactgttaa
     6001 agtggatact gacgctatcc gtcccttctt tctcattatc attgtctccc gttgccgtcg
     6061 cgtctggctc aaggcggaaa ctgtccagcg gcatacccgg tgggatcaaa tcattaatcg
     6121 gtagatcaaa agctacgacc gttgccagat gtcccggctg gttgaacgtg gtacgcaagg
     6181 taaagtaatg accgttctgc caggccaggc ggcgcatgtt agaaaaactt tcgcgttcat
     6241 cgagggcgtt ggcctgttgc aacatctctg cacgacgtga atcaacaatg tcgctgatgg
     6301 tcgattcttt aaatccggag gtgagatctt tgaggggcag ggttgagatc agcaccagac
     6361 tgttatcctg accattcagg taatacatcg accacggtac attttctgcg ccccacaatg
     6421 tgtccagata ggtggacatc cgctgagtca tctcaagcgt tgagttgtcg tgagagccaa
     6481 agattaacgc ttccgttttg cggcgcggtt tctccagata gtagacatcc tgtttcaggc
     6541 gcgtctcttg taaaccttcg ccggaggagg gggaggttgt cgcggcaatg ttgtcgtaga
     6601 tctgccaggt cacgtaacgc caggtattga cgcgcttttg gatagcgtgg gtaatgtcga
     6661 caatctggta acttttatct ttcagccatg cgttaacggc gctttgtacc attacaccca
     6721 tcgtcaccag taacacaatg atcaacagta aaaagaagcg ggtaatgctc cccggtagga
     6781 gtgaaaagcg ggtcgtggcc gttgtctctt tctgacgcat tcgtgtttat gacctgttaa
     6841 aacttcgcga agtgataggg cagtataaag ggtacagtgt gaaattccag actcttacct
     6901 gattgatgat tctctattct cccgtgatat ttatcatcct gcattggggg aaatagatgt
     6961 acaagcgcca ttttgctgta caaataacct acaaaaagcc caacgaaatt aattgcaaat
     7021 aaacgatgat tgctggaaat tatgctgatg ttaattattt gtgaaatagt taacaagcgt
     7081 tatagttttt ctgtggtagc acagaataat gaaaagtgtg taaagaaggg taaaaaaaac
     7141 cggatgcgag gcatccggtt gaaatagggg taaacagaca ttcagaaatg aatgacggta
     7201 ataaataaag ttaatgatga tagcgggagt tattctagtt gcgagtgaag gttttgtttt
     7261 gacattcagt gctgtcaaat acttaagaat aagttattga ttttaacctt gaattattat
     7321 tgcttgatgt taggtgctta tttcgccatt ccacaataat cttaaaaagt tcccttgtat
     7381 ttacattttg aaacatctat agcgataaat gaaacatctt aaaagtttta gtatcatatt
     7441 cgtgttggat tattctgcat ttttggggag aatggacttg ccgactgatt aatgagggtt
     7501 aatcagtatg cagtggcata aaaaagcaaa taaaggcata taacagaggg ttaataacat
     7561 gaaagttaaa gtactgtccc tcctggtccc agctctgctg gtagcaggcg cagcaaacgc
     7621 tgctgaagtt tacaacaaag acggcaacaa attagatctg tacggtaaag tagacggctt
     7681 gcactatttc tctgacaaca agtcagaaga cggcgaccag acctatgtac gtcttggttt
     7741 caaaggcgaa actcaggtta ctgaccagct gaccggttac ggccagtggg aatatcagat
     7801 ccagggcaat acctctgaag acaacaaaga aaactcctgg acccgtgtgg cattcgcagg
     7861 tctgaaattc caggatgtag gttctttcga ctacggtcgt aactacggcg ttgtttacga
     7921 cgtaacttcc tggaccgacg tactgccaga attcggtggc gacacctacg gttctgacaa
     7981 cttcatgcag cagcgtggta acggcttcgc gacctaccgt aacaccgact tcttcggtct
     8041 ggttgacggt ctgaactttg ctgttcagta ccagggcaaa aacggtagcg taagcggcga
     8101 aggcatgacc aacaacggtc gtggcgctct gcgtcagaac ggcgacggtg tcggcggttc
     8161 tatcacttat gattacgaag gcttcggtat cggtgctgca gtttccagct ccaaacgtac
     8221 tgatgatcaa aatggtagct acatcagcaa tggtgtagtt cgtaactaca tcggtactgg
     8281 cgaccgtgct gaaacctaca ctggtggtct gaaatacgac gctaacaaca tctacctggc
     8341 tgctcagtac acccagacct acaacgcaac tcgcgtaggt tccctgggtt gggcgaacaa
     8401 agcacagaac ttcgaagctg ttgctcagta ccagttcgac ttcggtctgc gtccgtctgt
     8461 agcatacctg cagtctaaag gtaaaaacct gggtgtcatc aatagtcgta actacgacga
     8521 cgaagatatc ctgaaatatg ttgatgttgg cgcgacctac tacttcaaca aaaacatgtc
     8581 cacctatgtt gactacaaaa tcaacctgct ggacgacaac cagttcactc gtgacgctgg
     8641 catcaacact gataacatcg tagctctggg tctggtttac cagttctaat ctcgattgat
     8701 atcgaacaaa gggcctgcgg gccctttgtt cattgttttc agcgtacaaa ctcagttttt
     8761 tggtgtactc ttgcgaccgt tcgcatgagg ataatcacgt atggaaataa gctttacccg
     8821 cgtggcactg ctggctgccg cgctcttctt tgttggttgc gatcaaaaac cacaacccgc
     8881 caaaacccac gctactgaag ttaccgttct tgaaggcaaa accatgggta ccttctggcg
     8941 tgccagcatc ccgggcattg atgccaaacg cagtgccgaa cttaaagaaa agattcagac
     9001 ccagctggac gccgacgatc agctgctttc gacctataaa aaagattccg cgctgatgcg
     9061 ctttaacgac tcgcaaagtt tgtcgccgtg gccagtaagt gaagcgatgg ccgaaatcgt
     9121 cactacctcg ctgcgcattg gcgcgaagac cgatggtgcg atggatatta ccgtcgggcc
     9181 gctggtaaat ctgtggggct ttggcccgga acaacagccg gttcaaattc cgagccagga
     9241 acagatcgac gagatgaaag ccaaaactgg tttacagcac cttacggtca ttaatcagtc
     9301 gcatcagcaa tatctgcaaa aagacctgcc ggatttatat gtcgatctct ctaccgtcgg
     9361 cgaaggttat gcggcggatc acttggcacg cttgatggag caggaaggga tttcccgcta
     9421 tctggtgtcg gtgggcggcg cgctgaacag ccgtggtatc aacggtgaag gcctgccgtg
     9481 gcgggtagcg attcaaaaac caaccgataa agaaaacgca gttcaggctg tggtggatat
     9541 caacggtcat gggattagca cctctggcag ctaccgtaac tattacgaac tggacggcaa
     9601 acgtctttcc catgttatcg atccgcaaac cgggcgtccc atcgaacaca atctggtatc
     9661 cgtgacggtg attgctccga cggcgctgga agccgatgcc tgggatactg gcttgatggt
     9721 actcgggccg gagaaagcca aagaggttgt tcgccgggaa gggctggcgg tttatatgat
     9781 caccaaagaa ggcgatagct ttaaaacctg gatgtcacca cagtttaaaa gcttccttgt
     9841 cagcgaaaaa aattaaagcg caagattgtt ggtttttgcg tgatggtgac cgggcagact
     9901 aaaggctatc cttaaccagg gagctgatta tgaaaaacgc cacatgctta actgacgatc
     9961 aacgctggca atctgtctta gcccgcgacc cgaatgccga cggcgaattc gttttcgccg
    10021 tgcgcaccac aggcatcttt tgccgtccgt cttgccgcgc cagacatgcc ttgcgggaaa
    10081 atgtctcctt ctacgcaaat gccagcgagg cactcgccgc cggatttcgc ccctgcaaac
    10141 gctgccaacc tgataaagcc aatgcccagc aacatcggtt ggataaaatc acccacgcgt
    10201 gtcgactgct ggaacaggaa acgcctgtaa cgttggaagc cttagccgac caggtggcga
    10261 tgagtccatt tcatctacat cggttgttta aagcgactac cggaatgacg cctaaagcct
    10321 ggcaacaggc ctggcgcgct cgccgtttgc gcgaatcgct ggcgaaaggg gagagcgtga
    10381 cgacgtctat tcttaacgcc ggattccccg acagcagcag ttactaccgc aaagccgatg
    10441 aaacgctggg catgacggct aaacaattcc gtcacggtgg cgaaaatctg gcggtgcgtt
    10501 acgcgctggc tgattgtgcg ctgggtcgtt gcctggtggc agaaagcgag cgggggattt
    10561 gcgcgatatt gctgggcgat gatgacgcga cattaatcag cgagttgcag cagatgtttc
    10621 ccgctgccga caacgcgcct gccgatctga cgtttcagca acatgtgcgt gaagtgatcg
    10681 ccagcctcaa tcaacgcgat acgccgctga cgttaccgct ggatattcgc ggcactgctt
    10741 ttcagcaaca agtctggcag gcactgcgca cgataccttg cggtgaaacc gtactggcta
    10801 acgccatcgg caaaccgaaa gcggtacggg ccgttgccag cgcctgtgcc gccaacaagc
    10861 tggctatcgt aataccctgt catcgagtgg tcggtggtga tggcacactt tccggttacc
    10921 gctggggcgt gtctcgtaaa gcgcaactgc tgcgccgcga agctgaaaat gaggagaggt
    10981 aatgttggat ctgtttgccg atgctgaacc gtggcaagag ccactggcgg ctggtgcggt
    11041 aattttacgg cgttttgctt ttaacgctgc ggagcaactg atccgcgata ttaatgacgt
    11101 tgccagccag tcgccgtttc gccagatggt cacccccggg ggatatacca tgtcggtggc
    11161 gatgaccaac tgtgggcatc tgggctggac gatccatcgg caaggttatc tctattcgcc
    11221 cattgatccg caaacaaata aaccgtggcc cgccatgcca caaagctttc atgatttatg
    11281 tcaacgtgcg gctacggcgg cgggctatcc agatttccag ccagatgctt gtcttatcaa
    11341 ccgctacgct cctggcgcga aactgtcgct gcatcaggat aaagacgaac cggatctgcg
    11401 cgcgccaatt gtttctgttt ctctgggctt acccgcgatt tttcaatttg gtggcctgaa
    11461 acgtaatgat ccgctcaaac gtttgttgtt ggaacatggc gatgtggtgg tatggggcgg
    11521 tgaatcgcgg ctgttttatc acggtattca accgttgaaa gcggggtttt atccactcac
    11581 caccgactgc cgctacaacc tgacattccg tcaggcaggt aaaaaagaat aaaaataaga
    11641 attattattg ctgtgcgcgc gaagatgttt aaactgcggg ctgtaattca ttgtccgggt
    11701 tttctgcatg gaacttcttg tacttgtctg gcggcagtat cgctggccat ttatcagtgt
    11761 gatggcgcta agcctcgcca gtgcggcatt aggcattggc ttaattgctt ttatcaatca
    11821 gcgccttatc gaaatggcgg ataccagtct gctggtattg ccggagtttc tgggattatt
    11881 gctgctgttg atggcagtca ctctcggatc gcaactggcg ctcaccactt tggggcatca
    11941 cttcgtttac cgactgcgta gtgaatttat caagcggatt ctggataccc acgtcgagcg
    12001 cattgaacaa ctcggtagcg cctcgttgtt ggcgggatta accagcgatg tgcgcaatat
    12061 caccattgct tttgtgcgtc ttccggaact ggtgcagggg atcattctca ctatcggttc
    12121 cgcggcgtat ctgtggatgc tgtcgggcaa aatgttgctg gtaacggcta tctggatggc
    12181 gatcaccatc tggggtggtt ttgtactggt ggcgcgggtg tacaaacata tggcgaccct
    12241 acgtgaaacc gaagacaagc tgtacacgga ttttcaaact gtacttgaag ggcgcaaaga
    12301 gctgactctg aaccgggaac gcgccgagta tgtgtttaac aacctctaca tccccgatgc
    12361 gcaagagtat cgccatcata ttattcgcgc agacaccttc catcttagtg ccgtgaactg
    12421 gtcaaacatc atgatgctgg gcgctatcgg cctggtgttc tggatggcga acagtctcgg
    12481 ttgggctgat accaacgttg ctgcgaccta ttcgttgacg cttttattcc tgcgtacgcc
    12541 gctgctttcg gcggttggcg cattgccgac gctgctgatg gcgcaggtgg cgtttaacaa
    12601 gctgaacaaa ttcgcgctcg cgcctttcaa agcagagttt ccgcgcccgc aggcgtttcc
    12661 caactggcaa acgctggagc tgcgtaatgt gacgtttagc tatcaggata acgcgttttc
    12721 cgttggtccg attaatctca ccatcaaacg tggcgagcta ctgtttctga ttggtggtaa
    12781 cggtagtgga aaatcgacgc tggcgatgtt gttgacgggc ttgtatcagc cacaaagcgg
    12841 cgaaatcttg ctggatggca aacctgtcag cggcgaacaa ccggaagatt atcgcaaact
    12901 gttttcggca gtgtttaccg atgtctggct ttttgatcaa ctgctggggc cggagggtaa
    12961 acccgctaac ccgcaactgg ttgagaagtg gctggcgcag ctgaaaatgg ctcataagct
    13021 tgagttaagc aacgggcgta ttgttaacct gaagttatca aaagggcaga aaaaacgcgt
    13081 ggcgctgttg ctggcgctgg cagaagaacg cgatattatc ctgctggatg aatgggcggc
    13141 ggatcaggat ccacacttcc gtcgtgagtt ttatcaggtg ttgctgccgc tgatgcagga
    13201 gatgggtaaa actattttcg ctatcagtca tgatgatcat tactttatcc acgccgaccg
    13261 cctgctggaa atgcgcaatg ggcaacttag cgagctgacg ggcgaagagc gcgatgccgc
    13321 ttcgcgtgat gccgttgccc ggacggcata atattacgac gctgacctgg cggactgctg
    13381 ccgtcaggtc aatatgctaa aaatcccttc atttctaata accctataat taatcaacga
    13441 aattataatg tttctaaaat tagaatataa tttataaaca ttatttaaat gttgttactt
    13501 aagtgttacc tttgatgccg cgcaaatctc acctgcaata aagcgactaa aagtaaggca
    13561 ttaacaagat gaaaaaagtg actgccatgc tcttctcgat ggccgtgggg cttaatgccg
    13621 tttcgatggc ggcaaaagcg aaagcgtccg aggagcagga aactgatgta ctgttgattg
    13681 gcggcggcat tatgagcgcc acgttgggga cctatttacg cgagctggag cctgaatggt
    13741 cgatgaccat gctggagcgc ctggagggtg tcgcgcagga gagttcgaac ggctggaata
    13801 acgccggaac cgggcattct gcactgatgg aactgaacta caccccgcaa aacgccgatg
    13861 gcagtatcag tattgaaaaa gcagtcgcca ttaacgaagc atttcagatt tcccgccagt
    13921 tctgggcgca ccaggtcgag cgcggcgtgc tgcgtactcc gcgttcattt atcaataccg
    13981 ttccgcatat gagctttgtc tggggcgagg ataacgttaa tttcctgcgc gcccgttacg
    14041 ccgcgttgca acaaagctcg ctgtttcgcg gtatgcgtta ctctgaagat cacgcgcaga
    14101 tcaaagagtg ggcaccgtta gtgatggaag ggcgcgatcc gcaacagaaa gtggcagcca
    14161 cgcgtacgga aattggtacc gatgtgaact acggcgagat cacccgccag ttaattgctt
    14221 ccttgcagaa gaaatctaac ttctcgctgc aactcagcag cgaagtccgc gccctaaagc
    14281 gtaatgacga taacacctgg accgttaccg ttgccgatct gaaaaatggc actgcacaga
    14341 acattcgtgc caaatttgtc tttatcggcg cgggcggtgc ggcgctgaag ctgttacagg
    14401 aatcggggat tccggaagcg aaagactacg ccggtttccc ggtgggcgga cagttccttg
    14461 tttcggaaaa cccggacgtg gttaatcacc atctggcgaa ggtttacggt aaagcatccg
    14521 ttggcgcacc accgatgtcg gttccgcata tcgatacccg cgttctggac ggtaaacgcg
    14581 tagtgctgtt tgggccattt gccaccttct caaccaaatt cctcaaaaac ggttcattgt
    14641 gggatctgat gagttccacc accacctcta acgtgatgcc gatgatgcac gtcgggctgg
    14701 ataatttcga tctggtgaaa tatctggtga gtcaggtgat gttgagtgaa gaggatcgtt
    14761 ttgaagcgtt gaaagagtac tatccgcagg cgaaaaaaga ggactggcgt ttgtggcaag
    14821 cggggcagcg tgtgcagatt atcaagcgtg atgccgataa aggtggtgta ctgcgtctgg
    14881 gtactgaagt ggtcagtgac cagcaaggga ccattgccgc gctcctggga gcatcgccag
    14941 gggcgtcaac cgccgcgccg attatgttgg atctgctgga aaaagtattt ggcgatcgcg
    15001 tttccagccc gcaatggcag gctacgttga aagcgatcgt tccgtcttat ggacgcaagc
    15061 tgaacggtga tgtagcggca acagaacgcg agttgcagta caccagcgaa gtgctggggc
    15121 tgaaatacga caagccgcag gcagcagata gtacgccaaa accgcagttg aaaccgcaac
    15181 ccgttcaaaa agaagtggcg gatattgcgt tgtaatgatg tgccacatcc ggcatggtat
    15241 gccggatgtg gcgtatactg ataagacgcg ccagcgtcgc atcaggcaac cggctcgggc
    15301 gttagatgtt ggatgcggcg taaccgcctt atccaaccaa cggggtgccg tacttcacaa
    15361 cagtttagcg aacttctgcg ttgtcaattt tctcttccgc cttccagacg cggtatttca
    15421 catctacatt gtctggcgta tacaccacga tcggcagctt gctgttgtaa cgcagcattc
    15481 cagcatcgcc cagatacgcg gtgacaaatt tcttctcttt cttgccatcc gggcaggcca
    15541 tcatcgtgga aaccggcgag ctaactttat caaagacata ataatcatag ccccagcctt
    15601 ccagcgtttt gctttccagc ttcccgccga gacgatgcaa attgcaatcg acttccagcg
    15661 tctgaccgat taacagttct actttcaggg tagattcatc ttcttgcggg gttaactgaa
    15721 tcacctgacg cttcatccct ttttcagctt gtggataagg cgcgattttt tccagtggct
    15781 ggacgctttc tgccgcccag gcggaagtgg tagcgaaagc ggcaaacaat actgcaggta
    15841 gaatggtctt catttttttg ctttccttct tcatttatag gttttcaccg atgatgtcgc
    15901 tgaaggttaa catattcata agatttatta atttgcttta tgaataactt aaagaatatt
    15961 cagacaattt tacctgctct tttagtgtta aattctgatg agagaacaaa ccagcagaaa
    16021 tatctctggt gaattaatcg ctatataaat atgtttataa ccatttgaaa tgtgagcaaa
    16081 agcccgtttt tgccacgctt cccgccactc ttttgatcct gctacaggtt ttaccccgat
    16141 cggggtatgc atctttgaca catcctttaa tatcttagcg gttataaaaa tggcttatta
    16201 attatgcggt ttatttggtc gctctcaatt ttcagagcgc gttaatgatg gaaggtcaat
    16261 gtgaagattg atgcatcccg tcggggcata ctcactggtc gctggcgcaa agccagtaac
    16321 ggtatccgtc cgccctggtc cggtgatgaa tctcattttc tgacccattg cacccgttgc
    16381 gacgcctgta ttaatgcttg tgaaaacaac attctgcaac gcggcgcggg cggctatccg
    16441 agcgttaatt tcaaaaataa cgagtgcagc ttctgttacg cttgcgcgca ggcttgcccc
    16501 gaatcgctat tttctccgcg ccacaccagg gcctgggatt tgcagttcac cattggggac
    16561 gcgtgcctgg cgtatcagtc agttgaatgc cgccgctgtc aggatagctg tgagccaatg
    16621 gcaattatct ttcgcccgac gctctccggg atctaccagc cgcaacttaa tagccaactt
    16681 tgcaacggat gtggagcatg tgcagccagc tgtccggtat cagccataac tgcggagtat
    16741 ctccatgcac actaactggc aagtttgcag cctggtcgtg caggccaaaa gcgaacgaat
    16801 ttcagacatc agcacccaac tgaacgcctt tcccggctgt gaagttgctg tcagcgacgc
    16861 gccgagcggt cagttgattg tggtggtgga agcagaagac agcgaaacgc tgatccaaac
    16921 cattgagtca gtacgcaacg tagagggcgt gctggcggtg tcgctggttt atcaccagca
    16981 ggaagagcaa ggtgaggaaa caccatgaaa ctcagtcgtc gtagctttat gaaagctaac
    17041 gccgttgcgg ccgctgcggc ggctgccggt ctcagcgtgc cgggcgttgc ccgcgccgtt
    17101 gttggtcagc aggaagccat caaatgggat aaagcgccgt gccgtttctg cggtactggt
    17161 tgcggcgttc tggtcggaac gcagcaggga cgtgtggtgg cctgtcaggg cgacccagac
    17221 gcaccggtta accgtggcct gaactgcatt aagggctatt tcctgcccaa gatcatgtac
    17281 ggtaaagacc gtttgacgca gccgctgctg cgtatgaaaa acggtaaata tgacaaagaa
    17341 ggcgaattta ccctaatcac ctgggatcag gccttcgatg tgatggaaga gaaattcaaa
    17401 accgccctga aagaaaaagg gccggaatcg atcggtatgt tcggttctgg tcagtggact
    17461 atctgggaag gttatgccgc gtccaagctg tttaaagcgg gcttccgttc gaacaacatc
    17521 gacccgaacg cgcgtcactg tatggcgtcg gcagtagttg gctttatgcg tacctttggt
    17581 atggatgagc cgatgggctg ctatgacgac atcgagcagg ctgacgcgtt tgtgctgtgg
    17641 ggcgcaaaca tggcggagat gcacccgatc ctctggtcgc gcatcactaa ccgtcgtctc
    17701 tctaatcaga acgtcaccgt ggcggtgctt tctacctacc agcatcgtag cttcgagctg
    17761 gcggataacg gcatcatctt tacgccacag tctgacctgg tgatcctgaa ctacatcgcc
    17821 aactatatca ttcaaaacaa tgcgataaat caggacttct tcagcaaaca cgttaacctg
    17881 cgcaaagggg cgacggacat tggctacggt ttacgtccga cccatccgct ggaaaaagca
    17941 gcgaagaatc caggttctga cgcctccgaa ccgatgagct ttgaagatta caaagccttc
    18001 gttgccgagt atacgctgga aaaaactgcc gaaatgaccg gcgtgccgaa agaccagtta
    18061 gaacaactgg cgcagctgta tgccgatccg aacaagaaag tcatctccta ctggacgatg
    18121 ggcttcaacc agcatactcg tggcgtgtgg gctaacaacc tggtctacaa cctgcacctg
    18181 ctgaccggca aaatttccca gccgggttgc ggtccgttct ccctgaccgg gcaaccttct
    18241 gcgtgtggta ctgcgcgtga agtgggcacc tttgctcacc gtctgcctgc ggacatggtg
    18301 gtgaccaacg agaaacaccg tgatatctgc gagaagaagt ggaatatccc gagcggcacc
    18361 attccggcga aaatcggtct gcacgcggtg gcacaagacc gtgcgctgaa agacggcaaa
    18421 ctgaatgttt actggaccat gtgtaccaac aacatgcagg ccgggccgaa catcaatgaa
    18481 gagcgtatgc cgggctggcg cgatccgcgc aacttcatca tcgtctccga tccgtatccg
    18541 acagtcagtg cgctggccgc cgacttgatc ctgccgaccg caatgtgggt agagaaagag
    18601 ggcgcttacg gtaacgccga acgccgtact cagttctggc gtcaacaggt acaggcaccg
    18661 ggcgaagcga aatcggatct ctggcagtta gtccagttct cccgccgctt caaaactgaa
    18721 gaagtatggc cggaagatct gctggcgaag aaaccggaac tgcgtggcaa aacgctgtac
    18781 gaagtgctgt atgccacacc ggaagtgagc aaattcccgg tatccgaact ggcggaagat
    18841 cagctgaacg atgaatcccg cgagctgggc ttctatctgc aaaaagggct gttcgaagag
    18901 tacgcatggt ttggtcgcgg tcacggtcac gatctggcac cgttcgatga ctaccacaaa
    18961 gcgcgcggtc tgcgctggcc ggtggtgaac ggtaaagaaa cgcagtggcg ttacagcgaa
    19021 ggtaacgacc cgtacgtgaa agcgggcgaa ggctataagt tctacggcaa accggatggc
    19081 aaagcggtga tcttcgcact gccattcgaa ccggcggcgg aagcaccgga tgaagagtac
    19141 gacctgtggc tctctaccgg acgcgttctg gagcactggc acaccggcag tatgactcgc
    19201 cgtgtaccag aactgcaccg cgccttcccg gaagcggtcc tgtttattca cccgctggat
    19261 gcgaaagcgc gcgatctgcg tcgtggcgac aaagtgaaag tggtttctcg ccgtggcgaa
    19321 gtgatctcga ttgtcgaaac gcgcggtcgt aaccgtccgc cgcagggcct ggtgtacatg
    19381 ccgttcttcg acgccgcaca gctggttaac aaactaacgc aggacgcgac cgatccgctc
    19441 tcgaaagaga cggacttcaa gaagtgcgca gtcaaactgg agaaggtgta agccattatg
    19501 tcccggtcag cgaaacctca aaatggtcgc cgccgctttc tgcgcgatgt tgttcgcaca
    19561 gcaggcgggc tggctgccgt gggtgtggcg ctggggttac aacagcaaac cgcacgcgca
    19621 tctggcgtgc ggttgcgccc gcccggagcc ataaacgaga acgcctttgc cagtgcctgt
    19681 gtgcgttgcg gtcagtgtgt tcaggcttgc ccttacgaca ccttaaaact ggcgacgctg
    19741 gcctctggtc tgtcggcggg cacgccatat tttgtcgcac gggatattcc ttgcgaaatg
    19801 tgtgaggaca ttccgtgcgc caaagtgtgc ccgagcggtg cgctggatcg tgagatcgaa
    19861 tcgatcgacg acgcgcggat ggggctggcg gtactggtgg accaggaaaa ctgtctcaac
    19921 tttcaggggc tgcgctgcga tgtttgttat cgcgaatgcc cgaaaattga tgaggccatc
    19981 accctggagc tggagcgcaa cacgcgtacc ggtaagcacg cccgctttct gccgacggtt
    20041 cacagagacg cctgtaccgg ttgcggtaag tgcgaaaaag tgtgcgtgct ggaacaaccg
    20101 gcaatcaagg tgttaccgct gtcactggct aaaggggagt taggtcacca ttaccgcttc
    20161 ggctggctgg aggggaacaa tggcaaatcg taaacgtgac gccgggcgcg aggcgctgga
    20221 gaaaaaaggc tggtggcgca gtcaccgttg gctggtgtta cgtcgccttt gtcagttctt
    20281 cgtgctgggg atgtttttga gcggtccgtg gtttggtgtg tggatcttac acggtaacta
    20341 cagcagtagc ctgttattcg acaccgttcc gctgaccgat ccgctgatga cgctgcaaag
    20401 tcttgccagc ggtcatctgc ctgccacggt ggcgttgacc ggtgcggtga ttatcaccgt
    20461 gctctacgcc ctggcaggaa agcgattatt ttgcagctgg gtctgcccgc tgaatccgat
    20521 taccgactta gcgaactggt tacgcaggcg ctttgacctc aatcagtctg cgacgatccc
    20581 tcgccacatt cgctacgtgc tgttggtggt cattctgctg ggatcggcct taactggcac
    20641 gctcatctgg gaatggatca accccgtatc tctgatgggg cgcagcctgg taatgggctt
    20701 cggcagcggc gcgctgctta ttctcgcgct gtttttattt gatctactgg tcgttgaaca
    20761 cggctggtgc gggcacattt gtccggttgg cgcgctgtat ggcgtgctgg gtagcaaagg
    20821 tgtgattacc gttgcggcca ccgatcggca gaaatgtaac cgctgtatgg attgttttca
    20881 tgtttgcccg gaaccgcgtg tgctacgtgc cccggtgctg gatgaacaaa gcccggtgca
    20941 ggtcaccagc cgcgattgca tgacgtgcgg tcgctgcgtg gatgtctgtt ctgaggatgt
    21001 atttacaata actacacgat ggagttcggg agcgaaatca tgaaaagcca tgacctgaag
    21061 aaagcgctgt gtcaatggac ggcgatgctg gccctggtgg taagcggcgc ggtttgggcg
    21121 gctaatggcg tcgattttag ccagtcgccg gaagtatccg ggacacagga aggggccatt
    21181 cggatgccaa aagagcagga acggatgccg ctgaactatg tgaatcagcc gccaatgatc
    21241 ccgcatagcg ttgaaggtta tcaggtaacg accaatacca accgctgctt gcagtgccac
    21301 ggtgtcgaaa gttatcgcac cactggcgcg ccgcgcatta gtcctactca ctttatggac
    21361 agcgacggca aagtgggcgc ggaagtggct ccgcgtcgtt atttctgtct gcaatgtcac
    21421 gtaccgcagg ccgataccgc gccaatcgtg gggaatacct ttaccccatc aaaaggttac
    21481 gggaaataag aggttattat gggaaattct gaccgtaagc ctggtctgat taagcgcctg
    21541 tggaaatggt ggcgtacccc cagccgtctg gcgctgggga cgctgctgtt gatcggtttt
    21601 gttggcggca tcgtcttctg gggtggcttt aacaccggga tggaaaaagc caataccgaa
    21661 gagttctgca ttagctgcca cgaaatgcgc aacacggtat atcaggaata catggattcc
    21721 gtgcactaca acaaccgtag cggcgtccgt gcgacctgtc cggattgtca cgttccgcac
    21781 gagtttgtgc cgaagatgat acgcaagctc aaagcaagta aagagctgta tggtaaaatt
    21841 tttggcgtta ttgacacgcc gcagaaattt gaagctcatc gtctgacgat ggcacagaat
    21901 gagtggcggc gcatgaagga caataactcg caggagtgcc gtaactgtca caacttcgag
    21961 tatatggata caaccgccca gaaatcggtt gccgcgaaga tgcatgacca ggcggtgaaa
    22021 gatgggcaaa cctgtattga ttgccataaa gggatagcgc acaagctgcc cgatatgcgt
    22081 gaagtcgagc caggttttta acagggttat tgcgtgggta tgcttgaagc cagagagtta
    22141 ctttgtgagc gggatgaacg aaccttattt agtggcttgt catttacgct gaacgcagga
    22201 gagtgggtac aaatcaccgg tagcaacggc gcggggaaga caacgcttct ccgtttgctg
    22261 acggggttgt ctcgccctga cgcaggcgag gttctctggc aagggcagcc cttgcatcag
    22321 gtacgcgaca gctaccatca aaacctgtta tggataggcc atcagccggg gatcaaaacc
    22381 cggctgacgg cgttagaaaa tctgcacttt tatcatcgcg atggcgatac cgcacaatgt
    22441 ctggaagccc tggcgcaggc cgggcttgcc ggattcgaag atattcctgt aaatcagctc
    22501 tcggccgggc aacaacgccg cgtcgcttta gcgcgtctgt ggctgacccg tgccacgtta
    22561 tggatcctcg acgagccttt taccgcgatt gacgttaacg gcgtcgatcg tctgacccag
    22621 cgtatggcgc agcatacgga gcaggggggg attgtgattc tgactaccca ccagccgctc
    22681 aacgttgctg aaagtaaaat tcgccgcatt tcactgacgc aaacgagggc cgcatgatgt
    22741 tctggcgcat tttccgtctt gagctgcgtg tagcgtttcg ccatagcgcc gaaatcgcca
    22801 acccgctgtg gttcttcctg attgtaatta ccctttttcc gctcagtatc ggtccggagc
    22861 cgcaactgct ggcgcgtatt gcaccgggca ttatctgggt tgctgcgctg ctttcatcct
    22921 tgctggcgct ggaacgactg ttccgtgacg atttgcagga cggcagtctt gaacaattga
    22981 tgttgttgcc gttacccttg cccgccgttg tgctggcgaa ggtgatggcg cactggatgg
    23041 taaccggtct gccgttactc atcctttcgc cactggtagc aatgctactg ggaatggatg
    23101 tttatggctg gcaagtgatg gcgctgacgc tgctgctggg aacgcctacg cttggctttc
    23161 tcggtgcacc gggtgtggcg ttgacagtgg gacttaagcg cggtggtgtg ctgctcagca
    23221 tactggtgtt accgctgact atcccattac tcatctttgc caccgccgcg atggacgcgg
    23281 cttccatgca tttgcccgtt gacgggtatc tggcaatttt aggcgcgttg ctggcaggca
    23341 ccgcgacatt aagtcctttt gcgacggcgg cagcgttacg aatcagcatt caataacgct
    23401 ggattactga tttttgttcg agtctggtat cgaaactatg tggaaaacac tgcatcaact
    23461 ggcgatccca ccacggctgt atcaaatctg tggctggttt ataccgtggc tggcaattgc
    23521 cagtgtggtc gtgcttaccg tcggctggat ctggggattc ggctttgctc cggctgatta
    23581 tcagcaggga aatagctacc gcattatcta cctgcatgtg cctgcggcga tctggtcgat
    23641 gggtatttat gcatcaatgg cggtggcggc gtttattggc cttgtctggc agatgaaaat
    23701 ggccaacctg gcggtggcgg cgatggcccc cattggtgcc gtgtttacct ttattgccct
    23761 ggttaccggc tctgcatggg gaaaaccgat gtggggcacc tggtgggtat gggatgcacg
    23821 tctgacttct gaactggtgc tgctgttttt gtatgtgggt gtgattgccc tgtggcacgc
    23881 cttcgacgac cgccgtctgg cgggccgtgc ggcaggtatc ctggtgctga ttggcgtggt
    23941 gaatctgccg attattcatt actccgtgga gtggtggaac accctgcatc agggatcaac
    24001 gcggatgcag caaagtatcg atccggcgat gcgttcgccg ctgcgctggt cgatttttgg
    24061 cttcctgctc ctgtctgcca cgctgacgct gatgcggatg cgtaatttga ttttgctgat
    24121 ggaaaaacgc cgtccgtggg tgagtgaact gatactgaaa agaggccgta aatgaccctt
    24181 gcatttgctt cctggaatga atttttcgca atgggcggtt acgccttttt tgtctggctg
    24241 gcggtggtga tgaccgttat tccgctggtg gttttggtcg tgcactcggt gatgcagcat
    24301 cgcgcaattc tgtgtggtgt ggagcaacag cgggcgcgtg aggcgcgttt acgtgctgcg
    24361 caacagcagg aggctgcatg aatattcgcc gtaaaaaccg cttgtggatt gcctgtgctg
    24421 tgttggcagg tttggcgctg accatcggtc tggtgctgta tgcgctgcgc tcgaatatcg
    24481 atctctttta tacgccgggg gaaattctct acggcaagcg tgaaactcag caaatgccgg
    24541 aagtcggtca gcgtctgcgc gttggcggga tggtgatgcc gggtagtgtg cagcgcgatc
    24601 ccaattcgct gaaagtgacc ttcaccattt acgacgctga aggctcagtg gatgtctctt
    24661 acgaaggcat tttgccggat ctgttccgtg aagggcaggg cgttgtggtg cagggcgagc
    24721 tggaaaaagg caatcatatc ctcgcgaaag aagtgctggc gaaacacgac gaaaactaca
    24781 cgccgccaga agttgagaaa gcgatggaag ctaaccaccg tcgcccggcg agtgtttata
    24841 aggacccagc atcatgatgc cggaaattgg aaacgggctg ctgtgcctgg cgctgggaat
    24901 tgcgctgctg ctgtccgtgt atccgctatg gggcgtggcg cgcggagatg cgcgcatgat
    24961 ggcgtcttcc cgcttgtttg cctggctgct gtttatgtct gtggctggcg catttctggt
    25021 gctggtcaat gctttcgtgg tcaacgactt taccgtcacc tatgttgcca gcaactccaa
    25081 tacccagctt ccggtgtggt atcgcgtggc ggctacctgg ggcgcgcatg aaggttcgct
    25141 tctgctgtgg gtgctgctga tgagcggctg gacctttgcg gtggcgattt ttagtcagcg
    25201 tattccgctg gatattgtgg cccgtgtact ggcgataatg gggatggtca gcgtcggctt
    25261 tttgctgttc attctcttta cctctaaccc gttctcacgc acgctgccga acttcccaat
    25321 tgaagggcgc gatcttaacc cgctgttaca ggatccgggg ctgatcttcc atccgcctct
    25381 gctttatatg gggtacgtgg gtttctcggt ggcgtttgct tttgccattg cttctttgct
    25441 gagcgggcgt ctggacagca cttatgcgcg ttttactcgc ccgtggacgc tggcggcgtg
    25501 gattttcctg acgctcggca ttgtgctcgg ttccgcatgg gcctattacg aactcggctg
    25561 ggggggctgg tggttctggg atccggtaga aaacgcctcg tttatgccgt ggctggtggg
    25621 gactgcgctg atgcactcac tggcggtcac tgaacaacgc gccagcttca aagcgtggac
    25681 attactgctg gcaatcagtg ccttctcgtt gtgtctgctg gggactttcc tggtgcgttc
    25741 cggcgtgctg gtatcggtac acgcgtttgc ctctgatccg gcacgcggta tgtttatcct
    25801 cgcctttatg gtactggtga ttggtggttc gctgctgctg tttgccgcgc gtggacacaa
    25861 agttcgctca cgcgtaaaca atgcgctgtg gtcgcgggaa tctctgctgt tagcgaacaa
    25921 cgttttgttg gtcgccgcga tgctggtggt attactgggg acgctgctgc cgctggtgca
    25981 caagcaactg ggactgggca gtatttcgat tggcgaaccg ttcttcaaca ccatgtttac
    26041 ctggctgatg gtgccgtttg cgctgctgct tggtgtcggt cctctggtgc gctgggggcg
    26101 cgatcgccca cgtaaaatcc gcaatttatt gattatcgcc ttcatctcaa cgctggtgct
    26161 gtcgctgctg ctgccgtggc tgttcgaaag caaagttgtg gcgatgacgg tgctcggcct
    26221 ggcaatggcc tgctggattg ctgtgctggc aattgcggaa gctgcgctgc gtatttcacg
    26281 tggcacgaaa accaccttca gttattgggg aatggtggcg gctcacctgg ggctggcagt
    26341 gacaattgtt ggtattgcct ttagccagaa ctatagcgtt gagcgtgatg tgcgcatgaa
    26401 gtccggcgat agcgtcgata ttcatgaata tcgcttcacc ttccgtgatg tcaaagaggt
    26461 gactggcccg aactggcgcg gcggtgtggc gactattggc gtaacgcgag agggtaaacc
    26521 ggaaacggtg ctgtatgcgg aaaaacgtta ttacaacact gccgggtcga tgatgaccga
    26581 agcggcgatt gacggcggca tcacgcgtga cctgtacgcc gcgctcggtg aagagctgga
    26641 aaacggcgcg tgggccgtgc gtctttacta caaaccgttt gttcgctgga tttgggcggg
    26701 cgggctgatg atggcgttgg gcggactgct gtgtctgttt gatcctcgct atcgtaagcg
    26761 cgtgagtccg caaaaaactg cgccggaggc tgtatgaagc gcaaagtatt gttaattccg
    26821 ttgattatct tcctggcgat tgccgcggcg ctgctgtggc agctggcgcg taatgccgaa
    26881 ggggatgatc cgaccaatct ggaatcggcg ctcattggca agccagtgcc gaagtttcgc
    26941 ctcgaatcac tggacaatcc ggggcagttt tatcaggcgg atgtgctgac tcagggcaaa
    27001 cctgtgctgc ttaacgtttg ggctacctgg tgtccgacct gccgtgcgga acatcaatat
    27061 ctgaatcagc tttctgcgca gggcattcgc gtggtcggca tgaactataa agacgatcgc
    27121 cagaaggcaa taagctggct gaaagagctg ggcaatcctt acgcgctaag cctgtttgat
    27181 ggcgatggca tgttagggct ggatctcggt gtctatggcg cgccagaaac gttcctcatc
    27241 gacggcaacg gcatcattcg ctatcgccat gcgggcgatc tcaatcctcg cgtctgggaa
    27301 gaagagatca agccgctgtg ggagaaatac agtaaggagg ccgcacaatg aggtttttat
    27361 tgggcgtgct gatgctgatg atctccggct cagcgctggc gaccatcgac gtgttgcagt
    27421 ttaaggatga agcgcaggag cagcagttcc gccaactcac tgaagaacta cgctgcccga
    27481 aatgccagaa caacagcatt gccgattcca actcgatgat tgccaccgac ctgcgccaga
    27541 aagtgtatga actgatgcag gaaggtaaaa gtaaaaaaga gattgtcgat tatatggtgg
    27601 cgcgttacgg caacttcgtc acttacgatc cgccgttaac gccgctgacc gtgctgctgt
    27661 gggtgcttcc ggtagtggct attggcattg gcggttgggt catttacgcc cgttcgcggc
    27721 gtcgggtacg cgtggtgccg gacgcgtttc ctgaacaaag cgtgccggaa ggtaagcgtg
    27781 ccggatatat tgtttatctg ccgggtattg tggtggcgtt aattgtggct ggcgtcagct
    27841 actaccagac tggcaattat cagcaggtga aaatctggca gcaggccacg gcacaggctc
    27901 cggcgttgct ggacagggcg ctggatccga aagccgatcc gctcaacgaa gaagagatgt
    27961 cgcgtcttgc gctggggatg cgtactcaac tgcaaaaaaa tccgggagat atagaaggct
    28021 ggattatgtt gggccgcgtt ggcatggcgc tgggtaacgc cagtatcgcc accgatgcat
    28081 acgctactgc gtatcgcctc gatccgaaaa acagtgatgc cgcactgggt tatgctgaag
    28141 cgttgacacg ttcatctgat cccaacgaca accgcctcgg tggtgaactg ctgcgccagt
    28201 tggtgagaac ggaccatagc aatatccgtg tgttaagcat gtatgcgttt aatgcctttg
    28261 agcagcagcg atttggcgaa gccgttgccg cgtgggagat gatgttgaaa ctcttatctg
    28321 ccaacgatac tcgccgtgcg gtgattgaac gtagtatcgc gcaggcgatg caacatttgt
    28381 cgccgcagga gagtaaataa aaagaggccc gatggtgatg ccatcgggct atttttattg
    28441 tgccccgcgt tgttgcagga acagaatggt ggctgccacg cgtgagcgga cattgagttt
    28501 gcgcagcaga ttgcgaatat gtacttttac tgtctgctct gaaatattca acaccgaggc
    28561 aatctgttta tttgacagcc cctgtgccag ctcgtgcaga acatccagct cgcgctccgt
    28621 cagcacgctg aagggatctt cttccgcgcc aaacatttca cgttcacgta agtactgatt
    28681 gacgcgttcg ctaaagactt tgctgccttt cgctccagca cgaattgctt ccagcaatac
    28741 ttccgggtcg ctgtctttca acagataacc gtctgcgcct gcgtctatca gcgcaaagac
    28801 atcgctggag gcatctgata cggtcaggat aataatttgc gcggtaacgc catccctgcg
    28861 caaggcattg agggtatcca ggccactcat acctttcata ttgagatcca gcaagatcac
    28921 gtcgatatcc agtctatttg ccagatcgat cgcgctcgcg ccgtcgcccg cttcggcgac
    28981 cacttcaaag ctaggatcaa gctccagtaa ctgacgaaca ccgcgtcgca taagtggatg
    29041 atcatccaca atcatcacct gaaaaggcgt tgcttcaggc atagtagtct cctggggttt
    29101 tattagaatc attatgtttg agcgtagcgt tggtaacgct accaggcgcg tgaatgttac
    29161 cccattttat gtatggacat gtagtgaaaa ctacaacctt gtcgttcgct ttggcatcat
    29221 tttcattata aagacggaat tttgcatcag cttc
//
LOCUS       DAJVUY010000032        29046 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.032, whole genome shotgun sequence.
ACCESSION   DAJVUY010000032 DAJVUY010000000
VERSION     DAJVUY010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29046
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.032"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            152..595
                     /locus_tag="OQQ72_001310"
     CDS             152..595
                     /locus_tag="OQQ72_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2011104.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            831..1649
                     /gene="ybhA"
                     /locus_tag="OQQ72_001311"
     CDS             831..1649
                     /gene="ybhA"
                     /locus_tag="OQQ72_001311"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyridoxal
                     phosphate/fructose-1,6-bisphosphate phosphatase"
                     /protein_id="HCS2011105.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1650..2708)
                     /gene="modC"
                     /locus_tag="OQQ72_001312"
     CDS             complement(1650..2708)
                     /gene="modC"
                     /locus_tag="OQQ72_001312"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HCS2011106.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2711..3400)
                     /gene="modB"
                     /locus_tag="OQQ72_001313"
     CDS             complement(2711..3400)
                     /gene="modB"
                     /locus_tag="OQQ72_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HCS2011107.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3400..4173)
                     /gene="modA"
                     /locus_tag="OQQ72_001314"
     CDS             complement(3400..4173)
                     /gene="modA"
                     /locus_tag="OQQ72_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2011108.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4339..4488)
                     /gene="acrZ"
                     /locus_tag="OQQ72_001315"
     CDS             complement(4339..4488)
                     /gene="acrZ"
                     /locus_tag="OQQ72_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump accessory protein AcrZ"
                     /protein_id="HCS2011109.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4617..5405
                     /gene="modE"
                     /locus_tag="OQQ72_001316"
     CDS             4617..5405
                     /gene="modE"
                     /locus_tag="OQQ72_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HCS2011110.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5473..6945
                     /gene="modF"
                     /locus_tag="OQQ72_001317"
     CDS             5473..6945
                     /gene="modF"
                     /locus_tag="OQQ72_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HCS2011111.1"
                     /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKILLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7206..8222
                     /gene="galE"
                     /locus_tag="OQQ72_001318"
     CDS             7206..8222
                     /gene="galE"
                     /locus_tag="OQQ72_001318"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCS2011112.1"
                     /translation="MRVLLTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8232..9278
                     /gene="galT"
                     /locus_tag="OQQ72_001319"
     CDS             8232..9278
                     /gene="galT"
                     /locus_tag="OQQ72_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HCS2011113.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9282..10430
                     /gene="galK"
                     /locus_tag="OQQ72_001320"
     CDS             9282..10430
                     /gene="galK"
                     /locus_tag="OQQ72_001320"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HCS2011114.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLAEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC"
     gene            10424..11464
                     /gene="galM"
                     /locus_tag="OQQ72_001321"
     CDS             10424..11464
                     /gene="galM"
                     /locus_tag="OQQ72_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCS2011115.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11666..12418
                     /gene="gpmA"
                     /locus_tag="OQQ72_001322"
     CDS             11666..12418
                     /gene="gpmA"
                     /locus_tag="OQQ72_001322"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HCS2011116.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12576..13628)
                     /gene="aroG"
                     /locus_tag="OQQ72_001323"
     CDS             complement(12576..13628)
                     /gene="aroG"
                     /locus_tag="OQQ72_001323"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HCS2011117.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            13944..14324
                     /locus_tag="OQQ72_001324"
     CDS             13944..14324
                     /locus_tag="OQQ72_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgS-like family protein"
                     /protein_id="HCS2011118.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14438..15379
                     /gene="zitB"
                     /locus_tag="OQQ72_001325"
     CDS             14438..15379
                     /gene="zitB"
                     /locus_tag="OQQ72_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HCS2011119.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHAHDALLDQIQHYL
                     MDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15376..16095)
                     /gene="pnuC"
                     /locus_tag="OQQ72_001326"
     CDS             complement(15376..16095)
                     /gene="pnuC"
                     /locus_tag="OQQ72_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS2011120.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16133..17176)
                     /gene="nadA"
                     /locus_tag="OQQ72_001327"
     CDS             complement(16133..17176)
                     /gene="nadA"
                     /locus_tag="OQQ72_001327"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HCS2011121.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17425..17500)
                     /locus_tag="OQQ72_001328"
     tRNA            complement(17425..17500)
                     /locus_tag="OQQ72_001328"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17465..17467),aa:Lys,seq:ttt)
     gene            complement(17647..17722)
                     /locus_tag="OQQ72_001329"
     tRNA            complement(17647..17722)
                     /locus_tag="OQQ72_001329"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17687..17689),aa:Lys,seq:ttt)
     gene            complement(17726..17801)
                     /locus_tag="OQQ72_001330"
     tRNA            complement(17726..17801)
                     /locus_tag="OQQ72_001330"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17766..17768),aa:Val,seq:tac)
     gene            complement(17853..17928)
                     /locus_tag="OQQ72_001331"
     tRNA            complement(17853..17928)
                     /locus_tag="OQQ72_001331"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17893..17895),aa:Lys,seq:ttt)
     gene            complement(17931..18006)
                     /locus_tag="OQQ72_001332"
     tRNA            complement(17931..18006)
                     /locus_tag="OQQ72_001332"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17971..17973),aa:Val,seq:tac)
     gene            complement(18042..18117)
                     /locus_tag="OQQ72_001333"
     tRNA            complement(18042..18117)
                     /locus_tag="OQQ72_001333"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18082..18084),aa:Lys,seq:ttt)
     gene            complement(18282..19073)
                     /gene="cpoB"
                     /locus_tag="OQQ72_001334"
     CDS             complement(18282..19073)
                     /gene="cpoB"
                     /locus_tag="OQQ72_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HCS2011122.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19083..19604)
                     /gene="pal"
                     /locus_tag="OQQ72_001335"
     CDS             complement(19083..19604)
                     /gene="pal"
                     /locus_tag="OQQ72_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HCS2011123.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19639..20931)
                     /gene="tolB"
                     /locus_tag="OQQ72_001336"
     CDS             complement(19639..20931)
                     /gene="tolB"
                     /locus_tag="OQQ72_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HCS2011124.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21064..22245)
                     /gene="tolA"
                     /locus_tag="OQQ72_001337"
     CDS             complement(21064..22245)
                     /gene="tolA"
                     /locus_tag="OQQ72_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HCS2011125.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSG
                     KNAPKTGGGAKGNNASPAGSGNSKNNGASGADINNYAGQIKSAIESKFYDASSYAGKT
                     CTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFK
                     P"
     gene            complement(22310..22738)
                     /gene="tolR"
                     /locus_tag="OQQ72_001338"
     CDS             complement(22310..22738)
                     /gene="tolR"
                     /locus_tag="OQQ72_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HCS2011126.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22742..23434)
                     /gene="tolQ"
                     /locus_tag="OQQ72_001339"
     CDS             complement(22742..23434)
                     /gene="tolQ"
                     /locus_tag="OQQ72_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HCS2011127.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23431..23835)
                     /gene="ybgC"
                     /locus_tag="OQQ72_001340"
     CDS             complement(23431..23835)
                     /gene="ybgC"
                     /locus_tag="OQQ72_001340"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS2011128.1"
                     /translation="MNTTLFRWPARVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(23985..24278)
                     /gene="ybgE"
                     /locus_tag="OQQ72_001341"
     CDS             complement(23985..24278)
                     /gene="ybgE"
                     /locus_tag="OQQ72_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HCS2011129.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24278..24391)
                     /gene="cydX"
                     /locus_tag="OQQ72_001342"
     CDS             complement(24278..24391)
                     /gene="cydX"
                     /locus_tag="OQQ72_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HCS2011130.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24406..25545)
                     /gene="cydB"
                     /locus_tag="OQQ72_001343"
     CDS             complement(24406..25545)
                     /gene="cydB"
                     /locus_tag="OQQ72_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS2011131.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25561..27129)
                     /gene="cydA"
                     /locus_tag="OQQ72_001344"
     CDS             complement(25561..27129)
                     /gene="cydA"
                     /locus_tag="OQQ72_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415261.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS2011132.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(27977..>29046)
                     /locus_tag="OQQ72_001345"
     CDS             complement(27977..>29046)
                     /locus_tag="OQQ72_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS2011133.1"
                     /translation="EESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIR
                     YDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTP
                     FNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVF
                     SEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSC
                     RLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMPP
                     VGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQ
                     GSNLSGPFLPGQSRTFSYRLA"
BASE COUNT         7337 a         7636 c         7087 g         6986 t
ORIGIN      
        1 aacagctata gcttctggtc ttgccgaaga agatccagct tctgcaacca ggccattcag
       61 aactgaagtg aagcgcagtc gactgttaat tgacgagtat ctgttaatca ggaaaatagc
      121 agacgtccag aacgaatggt tcggcctttg catggatctt gcactggtaa caggacagcg
      181 cgaaggagat ctggcggcta tgagatggga ggatataaga gatggcagac tatacgtgga
      241 acaacaaaaa acaggggcaa aaattcgcat ttctctcccc accacgattt ccagattgaa
      301 tttaacactt accgatgtac tggataactt gaaaaaaata aacggtaaaa acgaaaagtt
      361 actcggaggg aagacagcca ggacaatcgc agcacagttc aggattgccc gagacacatc
      421 cggattgaaa tgggaaggtg acccaccgcc atttcatgaa atccgaagtt tatccggtcg
      481 cctgcactca gcagaaaaag gcagtgattt cactcaggcg ctccttggac atcgttcatc
      541 cagcatgacg gataaatacc gtgacggacg agggagggaa tggaaagaca tttagaatta
      601 atttcgaatg atttcgaaac accacttgta attaattgat tataaaggat taattcctaa
      661 gaggcatttg cttcatgaat gctcctttgc atttagcaac tgactgtaac agctaaaatt
      721 agtcgctttt ggcggtgaat gctgaattaa aacgcagaat tttgtccgat agtggtatcg
      781 gtgtaccatt cgcgcagacg aaaattctta accttaatct ggaatacgcc atgaccacac
      841 gcgtgattgc tctcgactta gacggcacct tattgacccc gaaaaagacc ctgcttcctt
      901 catcgataga agccctggcc cgcgctcgcg aagcaggcta tcaattaatc atcgtcacag
      961 gtcgccatca cgtcgctatt catccttttt atcaggcgct ggcgctggat acacctgcta
     1021 tttgctgtaa tggcacctat ttgtatgatt atcatgcaaa aaccgtgctg gaagcggacc
     1081 caatgcccgt taataaagcc ctgcaactca ttgagatgct gaatgaacac cacattcacg
     1141 gtctgatgta tgtggatgat gcaatggtct atgagcaccc gaccgggcat gtcattcgca
     1201 cgtctaactg ggcgcaaacc ctgccgccgg aacagcgtcc gactttcaca caagtcgctt
     1261 ctctggctga aacggcgcaa caagttaacg ccgtatggaa gttcgccctg acgcacgatg
     1321 acatgccgca attgcagcat tttggtaagc atgtcgaaca tgaactggga ctggagtgtg
     1381 aatggtcctg gcacgatcag gttgatattg cacgcggcgg caacagcaaa ggtaaacgtt
     1441 tgacgaaatg ggttgaggcg caaggctggt cgatggaaaa cgtcgtggcg ttcggcgata
     1501 actttaatga tatcagtatg ctggaggccg ctggtacagg cgtggcgatg ggcaacgccg
     1561 atgacgcggt aaaagcgcgc gccaacattg tgattggtga taacaccacc gacagcattg
     1621 cccagttcat ttatagccac ctgatttaat caggcggtta tcgacacact tttaatttgc
     1681 gcgtacagcc acaggcctgg tttgatcgcc agttcatccc tggcccacgg gctgatacgc
     1741 gcccacagcg ttttaccgcc gacttccagc tccacttcca cctgaccgtt gtcgtcataa
     1801 ctattaacaa cttttgcccg caatacgtta cgaatgctgg tttgctgcgg cggttgtaaa
     1861 accagagaaa catcggaagc ctgaatgcgg atacgtagcg cagcttgcag cggttcgtcc
     1921 agcttattga cccacaaatg ctgatcgccc agcgccagcg cggtcatcgc gtaatgcgga
     1981 tgatgctcaa gcaccgtcac tttcagaatg ctactttgtt gctctttcgg cagccacgga
     2041 ttcatcacgc tactacccca gacttcttcc agtgcgccaa aggctttcac ctgaccgttt
     2101 tccagtacca tcactctgtc tgccagatgg aggatctcat ccagcgaatg gctgacatac
     2161 aacatcggga tgttgatttc ccgcgtcaga cgttgcagat aaggcaacag ttcgcgttta
     2221 cgcggaatat ccagtgacgc cagcggttca tccagcaaca gcaattctgg tgccgtcagc
     2281 aaagcccgcc caatcgctac gcgctgtttt tcgcctccgg acaggctgcc tggtaaacgg
     2341 tcaagcaacg gttcaatgcc taaaagcgcc accagcttat cgaactgatc gaccatgctt
     2401 ttcgccatgc cgtagcgcag attgccacgc actttgtaat gcggaaacag ccgcgcatcc
     2461 tgaaaaacat agccaacgcg acgcttttct ggcgtcaggc agataccttt ttcggcatca
     2521 tttagtaccc gaccattgag gacaatcctc cctttttgcg ggcgcgtcag tccactgatg
     2581 gcgttaatca gcgaagtttt tccggcaccg gagacgccaa agatagcagt gatgccattg
     2641 gcgggcagcg tttcattaat agtcaggcaa tggttgccca acgtctggga aaaattcagt
     2701 tccagcatga ttagcgcccc gcccgttcac ggctgattct ggccagccat tctgaaatca
     2761 acagggagat catcgccagc gcaatagaaa taatgcacag tctcgccgcg ccactttccc
     2821 cgccgggggt ctggatcagg gtatacatgg cagagggaat ggttcgcgtt tcgccaggaa
     2881 tgttcgacac aaaggtgatg gttgcaccaa actcaccgag agaacgagca aaagccagta
     2941 ccgtaccaac aataattccc ggtaaggtca gcggtaacgt gatagtaaag aaaacgcgcc
     3001 agcgcccggc acctagtgtt cttgcggcct gttcgagttt gacatcaacc ccttccagcg
     3061 ccagacgaat tgcccgcacc atcagcggaa acgacatgac ggcggcagcg agaaccgcgc
     3121 cgcgccagct aaaggcgaag gtaataccaa accagtcata cagacgttca ccgataaatc
     3181 cgcgccgtcc catcgaaact aataataagt aaccgacgac cacgggcggt aacaccagcg
     3241 gtagatgcag tacgctgtcg agcagagctt tgcccggaaa cgtgcaacgc accagtaacc
     3301 aggcaaaaaa gatcccaaac ggcaggctaa acagcacagc cagggaagaa actttcaggc
     3361 ttaataaaac tgcctgccat tctggatcgg tcagtatcat tacttggttg taaatccgta
     3421 acgtttaaag atttccgctg cctgcggtcc cttcagataa tcataaaatg ctttcactgt
     3481 cgcattgtta tgcccttcca caacagcaac cggatattcc acttttttat gtgaatcttc
     3541 cgggaaggtg gcaaccactt ttaccccttt gctgacaact gcgtcagaac cgtaaacaat
     3601 gcccaacggc gcttcattgc gttcgaccaa cgccagcgcg ccacgaacat cttccgccgg
     3661 agccaatttc ggggagagcg tatcccatgc gcccagtttt tgcagtgctt cttttgcata
     3721 aatgccagca gggacatgtt ccggatcgcc aaccgcgagg cgaccgccat tcagcagcga
     3781 agtccagtta gttgtgctgt cgatgatgaa atctttctgc tcgctggctt tcggtgctac
     3841 aacgaccagg ctattgccga gcagtgtctg gcgcgaagcc gtatcgatcg cttttttatc
     3901 aaccgcataa tccatccatt tctgatcggc agagataaac agatccgcag gcgctcccgc
     3961 ttcaatctga cgggccagag tagatgacga agcgaaagaa gaaaccacat ccacgccttt
     4021 ttctttttta tactgcgtag caatgtcctg cattgcgtta gtcagtgatg cggcggcgaa
     4081 caccgtgatt ttcccttcat ctgccagtgt attgccagca acagcgaaag agagtgccgc
     4141 cccggcaaac aagttcaacc atttacgagc cattggtaac cccttaatgt aacgttatat
     4201 aggtgacaat ataacggcta actcagaatt ttcccagcag ttattgctaa cctttgtgag
     4261 gtagataaga aaaaatatcg gctggaaaag caggaagttg agaaaaagaa atgcccgact
     4321 aagtgggcat tcagggaatc aatgattttg tccgggctgg tcttttttac caacaccaga
     4381 aaagatgttg aatacttcac caagaccgta aatcagaccc aggatgatgg ccatcacgac
     4441 aggtaccatg attacggcga ataccagact ttttaataac tctaacatgg tcaactccag
     4501 atatagtcat gagactattc taaccgctaa gcacagaaaa gcactcccct tttgtgcggt
     4561 cagctttgcg tggcgttcgt tttccgtcac aataagactt ttgccaggac attgttatgc
     4621 aggccgaaat ccttctcacc cttaagctcc aacaaaaatt attcgccgac ccgcgccgga
     4681 tttcgctact aaaacacatt gcgctttccg gttccattag ccagggagcg aaagatgccg
     4741 gtatcagcta taaaagcgcc tgggatgcca ttaacgagat gaatcagtta agcgagcata
     4801 ttctggttga gcgcgcaaca ggcggtaaag gtggcggcgg cgcagtactg acccgctatg
     4861 gtcagcgact gattcagctc tatgacttac tggcgcaaat ccagcaaaaa gcctttgatg
     4921 tgttaagtga cgatgacgcc ctgccgctga acagcctgct ggccgcgatc tcacgttttt
     4981 cactgcaaac cagcgcccgt aaccagtggt tcggtaccat caccgcccgc gatcatgatg
     5041 acgttcaaca gcatgttgat gtcttactgg ctgacggaaa aacacgcctg aaagtcgcaa
     5101 ttaccgcaca aagcggcgca cgtctggggc tggatgaagg caaagaagtg ttgatattgc
     5161 taaaagcgcc gtgggtaggc attactcagg acgaagcggt cgcacaaaac gccaacaacc
     5221 aattaccggg tattattagt catattgagc gcggcgcaga gcagtgcgaa gtattaatgg
     5281 cgctacccga cgggcaaaca ctgtgcgcca cagtgccggt aaatgaagcg acttctcttc
     5341 agcaagggca gaatgtcacg gcctacttta atgccgacag cgtgattatc gccacgctgt
     5401 gctaagcgtg ttgacaattt gttatgaaac acgtatccct gtcagtaatc gctgcacaaa
     5461 atgggatata aaatgtcatc gttgcaaatt ttgcaaggca cgtttcgtct tagcgacaca
     5521 aaaacgctgc aattgcctca gctaacgtta aacgcgggtg atagttgggc gtttgtcggt
     5581 tcgaatggaa gcgggaaatc ggccctggcc cgcgcgctgg cgggggaact tccgcttttg
     5641 aaaggtgaac ggcaaagcca gttttcccac atcactcgtc tctccttcga gcaattgcaa
     5701 aaactcgtca gcgacgaatg gcagcggaat aacaccgata tgctcggccc tggcgaagat
     5761 gacaccggac gcactacggc tgagatcatt caggatgaag taaaggatgc accgcgttgc
     5821 atgcaactgg cgcagcagtt cggtattacc gccctcctcg accgacgctt taaatacctt
     5881 tccactggcg agacgcgaaa aatcctgctg tgtcaggcgc tgatgtcgga gcctgacttg
     5941 ttgattcttg atgagccgtt cgatggcctg gatgttgcct cacgtcagca gctggctgag
     6001 cgactcgcct cgttacatca gtccggtatt actctggtac tggtgctcaa tcgcttcgat
     6061 gagatcccgg agtttgtcca gtttgctggc gtgctggcgg attgcacgtt agcggaaact
     6121 ggcgctaaag aggaactgct ccaacaagca ctcgtcgcgc aactggcaca tagtgaacag
     6181 cttgaaggtg tgcaactgcc ggagccggat gaaccttcag cacgtcacgc cttacccgcc
     6241 aacgaaccgc gcattgtgct gaacaatggc gtggtttctt ataacgatcg ccccattctt
     6301 aataacctta gctggcaggt gaatccaggt gaacactggc aaattgtcgg gccaaatggt
     6361 gcaggaaaat cgacgttatt aagcctggtt actggcgatc atccgcaagg ttacagcaac
     6421 gatttgacgc ttttcggacg acgtcgcggc agcggcgaaa ccatctggga tatcaaaaag
     6481 catatcggtt acgtcagcag tagtttgcat ctggattacc gggtcagcac taccgtgcgt
     6541 aatgtgattc tttctggcta ttttgattcg attggcattt atcaggccgt ttcggatcgc
     6601 cagcaaaaac tggtgcagca gtggctggat attctcggca ttgataaacg tacggctgac
     6661 gctccgttcc atagtctttc ctggggacag cagcatctgg cgctgatcgt ccgcgcactg
     6721 gtgaaacatc cgacgttgct tattctcgat gaaccactac aggggcttga tccgctcaat
     6781 cgccagctta tccgccgttt tgttgatgtg ctgattagcg aaggtgaaac gcaattgttg
     6841 tttgtttcgc accacgctga agatgcgcct gcctgtatta cccatcgcct tgagttcgtg
     6901 ccggacggtg gactctatcg ctatgtgctg acaaaaatat attgagtcgg tagtgctgac
     6961 cttgccggag gcggcctaag cgccctctcc ggccaacggt tcgacgcatg caggcatgaa
     7021 accgcttctt ttttcagata aaaagcgcaa tcattcataa accctctgtt ttataatcac
     7081 ttaatcgcgc ataaaaaacg gctaaattct tgtgtaaacg attccactga tttattccat
     7141 gtcacacttt tcgcatcttt gttatgctat ggttatttca taccataagc ctaatggagc
     7201 gaattatgag agttctgctt accggtggta gcggttacat tggaagtcat acctgcgtgc
     7261 aattactgca aaacggtcat gatgtcatca ttcttgataa cctctgtaac agtaagcgca
     7321 gcgtactgcc tgttatcgag cgtttaggcg gcaaacatcc aacgtttgtt gaaggcgata
     7381 ttcgtaacga agcgttgatg accgagatcc tgcacgatca cgctatcgac accgtgatcc
     7441 acttcgccgg gctgaaagcc gttggcgaat cggtacaaaa accgctggaa tattacgaca
     7501 acaatgtcaa cggtactctg cgcctgatta gcgccatgcg cgccgctaac gtcaaaaact
     7561 ttatttttag ctcctccgcc accgtttatg gcgatcagcc caaaattcca tacgttgaaa
     7621 gcttcccgac cggcacaccg caaagccctt acggcaaaag caagctgatg gtggaacaga
     7681 tcctcaccga tctgcaaaaa gcccagccgg actggagcat tgccctgctg cgctacttca
     7741 acccggttgg cgcgcatccg tcgggcgata tgggcgaaga tccgcaaggc attccgaata
     7801 acctgatgcc atacatcgcc caggttgctg taggccgtcg cgactcgctg gcgatttttg
     7861 gtaacgatta tccgaccgaa gatggtactg gcgtacgcga ttacatccac gtaatggatc
     7921 tggcggacgg tcacgtcgtg gcgatggaaa aactggcgaa caagccaggc gtacacatct
     7981 acaacctcgg cgctggcata ggcagcagcg tgctggacgt ggttaatgcc ttcagcaaag
     8041 cctgcggcaa accggttaac tatcattttg caccgcgtcg cgagggcgac cttccggcct
     8101 actgggcgga cgccagcaaa gccgaccgtg aactgaactg gcgcgtaacg cgcacactcg
     8161 atgaaatggc gcaggacacc tggcactggc agtcacgcca tccacaggga tatcccgatt
     8221 aaggaacgac catgacgcaa tttaatcccg ttgatcatcc acatcgccgc tacaacccgc
     8281 tcaccgggca atggattctg gtttcaccgc accgcgctaa gcgcccctgg cagggggcgc
     8341 aggaaacgcc agccaaacag gtgttacctg cgcacgatcc agattgcttc ctctgcgcag
     8401 gtaatgtgcg ggtgacaggc gataaaaacc acgattacac cgggacttac gttttcacta
     8461 atgactttgc ggccttgatg tctgacacgc cagatgcgcc agaaagcaac gatcctttga
     8521 tgcgttgcca gagcgcgcgc ggtaccagcc gggtgatctg cttttcaccg gatcacagta
     8581 aaacgttgcc agaactgagc gttgcggcat tgacggaaat cgtcaaaacc tggcaggagc
     8641 aaaccgcaga gctgggaaaa acgtacccgt gggtgcaggt ctttgaaaac aaaggtgcgg
     8701 cgatgggctg ctctaacccg catccgcacg gacagatttg ggcaaatagc ttcctgccta
     8761 acgaagctga gcgcgaagac cgcctgcaaa aagaatattt tgccgaacag aaatcaccaa
     8821 tgctggtgga ttatgttcag cgcgagctgg cagacggtag ccgtaccgtt gtcgaaaccg
     8881 aacactggtt agccgttgtg ccttactggg ctgcctggcc gttcgaaacg ctactgctgc
     8941 ccaaagccca cgttttgcgg atcaccgatt tgaccgacgc ccagcgcagc gatttggcgc
     9001 tggcgttgaa aaagctgacc agtcgttatg acaacctctt ccagtgctcc ttcccctact
     9061 ctatgggctg gcacggcgca ccatttaatg gcgaagagaa tcaacactgg cagctgcacg
     9121 cgcactttta tccgcctctg ctgcgctccg ccaccgtacg taaatttatg gttggttatg
     9181 aaatgctggc agagacccag cgagacctga ccgcagaaca ggcagcagag cgtttgcgcg
     9241 cagtcagcga tatccatttt cgcgaatccg gagtgtaaga aatgagtctg aaagaaaaaa
     9301 cacaatctct gtttgccaac gcatttggct accctgccac tcacaccatt caggcgcctg
     9361 gccgcgtgaa tttgattggt gaacacacgg actacaacga cggtttcgtt ctgccctgcg
     9421 cgattgatta tcaaaccgtg atcagctgtg caccacgcga tgaccgtaaa gttcgcgtga
     9481 tggcagccga ttatgaaaat cagctcgacg agttttccct caatgcgccc attgtcgcgc
     9541 atgaaaacta tcaatgggcg aactacgttc gtggcgtggt gaaacatctg caactgcgta
     9601 acaacagctt cggcggtgtg gacatggtga tcagcggcaa tgtgccgcag ggtgccgggt
     9661 taagttcttc cgcttcactg gaagtcgcgg tcggaaccgt attgcagcag ctttatcatc
     9721 tgccgctgga cggcgcacaa atcgcgctta acggtcagga agcagaaaac cagtttgttg
     9781 gctgtaactg cgggatcatg gatcagctaa tttccgcact cggcaagaaa gatcatgcct
     9841 tgctgattga ctgtcgttca ctggggacca aagcagtttc catgccgaaa ggtgtggctg
     9901 tcgtcatcat caacagtaac ttcaaacgta ccctggttgg cagcgaatac aacacccgtc
     9961 gtgaacagtg cgaaaccggt gcgcgtttct tccagcagcc agccctgcgc gatgtcacca
    10021 ttgaagagtt caacgctgtt gcacatgagc tggacccaat cgtggcgaaa cgcgtgcggc
    10081 atatcctgac tgaaaacgcc cgcaccgttg aagctgccag cgcgctggag cagggcgacc
    10141 tgaaacgtat gggcgagttg atggcggagt ctcatgcctc tatgcgcgat gatttcgaaa
    10201 tcaccgtgcc gcaaattgac actctggcag aaatcgtcaa agctgtgatt ggcgacaaag
    10261 gtggcgtacg catgaccggc ggcggatttg gcggctgtat cgtcgcgttg atcccggaag
    10321 agctggtgcc tgccgtacag caagctgtcg ctgaacaata tgaagcaaaa acaggtatta
    10381 aagagacttt ttacgtttgt aaaccatcac aaggagcagg acagtgctga acgaaactcc
    10441 cgcactggca cccgatggtc agccgtaccg actgttaact ttgcgtaaca acgcagggat
    10501 ggtagtcacg ctgatggact ggggtgcgac tttactttca gcccgtattc cgctttccga
    10561 tggcagcgtc cgcgaggcgc tgctcggctg tgccagcccg gaatgctatc aggatcaggc
    10621 cgcgtttctg ggggcctcta ttggtcgtta tgccaaccgc atcgccaata gccgttatac
    10681 ctttgacggt gaaaccgtga ccctttcgcc aagtcagggc gttaaccagc tgcacggcgg
    10741 cccggaaggg ttcgacaaac gtcgctggca gattgtgaac cagaacgatc gtcaggtgct
    10801 gtttgccctg agttcagatg atggcgatca gggcttcccg ggtaatctcg gcgcaacggt
    10861 gcaatatcgt ctgaccgacg ataaccgtat ctccattact tatcgcgcca cagttgataa
    10921 accttgcccg gtgaatatga ctaatcacgt ctatttcaat cttgacggcg agcagtctga
    10981 cgtgcgcaat cacaagttgc agattctggc ggacgaatat ctgccggttg atgaaggcgg
    11041 cattccgcac gacggcctga aatctgtcgc cggaacgtct tttgatttcc gcagcgccaa
    11101 aatcatcgcc agtgagtttc ttgccgacga cgatcagcgc aaagtgaaag gttacgatca
    11161 cgcattcttg ttacaggcca aaggcgatgg caagaaagtg gcggcgcatg tctggtcagc
    11221 agatgaaaaa ttgcagctga aggtctacac caccgctccg gctctgcaat tctactccgg
    11281 caacttcctc ggcggcacac cgtcgcgggg aacagaacct tacgccgact ggcaagggct
    11341 ggcgttggaa agcgagtttc tgccggacag cccgaaccac cctgaatggc cgcaaccgga
    11401 ctgcttcctg cgtcctggcg aagagtattc cagcctgacg gaatatcagt ttattgctga
    11461 gtaatgttaa gccctcgtca tgagggcttt atctcatatt gctcaaatca ccagcaaaca
    11521 ccgacatatt tgcaactcaa tattcacaac aaccttacac tgcgccacta ttttcgctat
    11581 ggttatgcgt aagcattgct gttgcttcgt cgcggcaata taatgagaat tattatcatt
    11641 aaaagatgat ttgaggagta agtatatggc tgtaactaag ctggttctgg ttcgtcatgg
    11701 cgaaagtcag tggaacaaag aaaaccgttt caccggttgg tacgacgtgg atctgtctga
    11761 gaaaggcgta agcgaagcaa aagcagcagg taagctgctg aaagaggaag gttacagctt
    11821 tgactttgct tacacttctg tgctgaaacg cgctatccat accctgtgga atgtgctgga
    11881 cgaactggat caggcatggc tgcccgttga gaaatcctgg aaactgaacg aacgtcacta
    11941 cggtgcgttg cagggtctga acaaagcgga aactgctgaa aagtatggcg acgagcaggt
    12001 gaaacagtgg cgtcgtggtt ttgcagtgac tccgccggaa ctgactaaag atgatgagcg
    12061 ttatccgggt cacgatccgc gttacgcgaa actgagcgag aaagaactgc cgctgacgga
    12121 aagcctggcg ctgaccattg accgcgtgat cccttactgg aatgaaacta ttctaccgcg
    12181 tatgaagagc ggtgagcgcg taatcatcgc cgcacacggt aactccctgc gtgcgctggt
    12241 gaaatatctt gataacatga gcgaagaaga gattcttgag ctgaatatcc cgactggcgt
    12301 gccgctggtg tatgagttcg acgagaattt caaaccgctg aaacgctatt atctgggtaa
    12361 tgctgacgag atcgcagcga aagcagcggc ggttgcaaac cagggtaaag cgaagtaaac
    12421 gtcattcgtt taaaatgaga aagccgactg caagtgagtc ggcttttttg ttgctaacaa
    12481 tggagcacat tgcctgatgc gacgcttcgc gacttatcag gcctgtggtg attcatcgga
    12541 tacgccactc tgacggcgca tccgacaatt aaaccttacc cgcgacgcgc ttttactgca
    12601 ttcgccagtt gacgtaacag agcatcggta tcttcccagc cgatgcaggc atcggtgatg
    12661 ctcttaccgt aggccagcgg ctccccgctc tcgaggctct gattgccttc caccagatgg
    12721 ctttccacca tcacgccaat aatggccttt tcgccaccgg caatctgctg gcaaacgtca
    12781 gcacaaacat ccatctgctt tttgaattgt ttggacgagt tagcatggct gaaatcgatc
    12841 atcacctgtg ctggcaggcc tgctttgttc agcccttctt tcacttcagc aacgtgcttc
    12901 gcgctgtagt taggctcttt accgccgcgc agaatgatat ggcaatcgcc gttaccgctg
    12961 gtattcacaa tcgccgaatg cccccatttc gttacggaca ggaagcagtg cggcgcaccg
    13021 gcggcattaa tggcatcgat agccacttta atcgtaccgt cggtgccatt tttgaagccg
    13081 actggacaag aaagccctga tgccagttcg cggtgcacct gcgattcggt ggtacgtgcg
    13141 ccaattgcgc cccagctcat caggtcagcg agatattgtg gggtgatcat atcgagaaac
    13201 tcacccgccg ctggcagacc gctgtcgtta atatcaagca gcaatttacg ggctatacga
    13261 agaccgtcgt tgatctggaa gctgttatcc atatgcggat cgttaatcag ccctttccag
    13321 cccaccgtgg tacgcggctt ttcaaaatag acgcgcatta cgatttccag ctcatctttc
    13381 agctcttcac gcagcgccag caagcgagtg gcatactctt tagccgcgac aggatcatga
    13441 attgagcacg ggccaatcac caccaacagg cgatcatcat tacctttcag gatcttatgg
    13501 atcgcttttc gggcatgggc aaccgtattc gcggcatttt cagtagcggg gaatttttcc
    13561 agcaatgcga caggaggaag taactctttg atttctttga tgcgtaaatc gtcgttctga
    13621 taattcatgt ctgttccagt gttgccatac ttatcttagt gaatgcaata cttccaatct
    13681 atatcttccg tcagaatgtg taaacggggt tttacattat gaacggatta atcctggaat
    13741 tagcaagaaa aacgccagat tgtcgcgaaa aacgagatct ctcctacaat ttctaactgt
    13801 aactcctttg tttgttaatt atttcaagat tctctgctgc gtttcataaa ctggctgaaa
    13861 tcttaaacca atgccttata ttcacctgca aatgcactgt tggaagaggt tatccgacat
    13921 aacgaccata acaggagcat cctatgaaaa tgacaaaact ggccacatta tttctgactg
    13981 ccactctaag ccttgccagc ggtgccgcac tggctgccga tagcggagcg caaactaata
    14041 acggccaggc aaacgccgca actgatgcgg gccaggtagc ccctgacgcc cgtgaaaatg
    14101 tcgcgccaaa taacgtcgac aataacgggg taaataccgg ttctggcggc acaatgctgc
    14161 attcggatgg ttcttcaatg aacaatgacg gaatgaccaa agatgaagag cacaagaaca
    14221 ccatgtgcaa agatggtcga tgtccggata tcaataaaaa ggtacaaacc ggtgatggca
    14281 tcaataatga tgtcgatacc aaaaccgacg gtaccacgca gtaaccctgc aaaatagcca
    14341 ataatgggag agcggagtct ctccctttta atttttcact tctaaaagca gtatgatgtc
    14401 ataaagttaa gtgagaataa ttaagggatg actcgtcatg gcgcactcac actcacacac
    14461 gtcctcacac ctgccagaag ataataatgc tcgtcgcttg ttgtatgctt tcggcgtgac
    14521 tgccgggttt atgctggtag aagtcgttgg tggttttctt tctggttctc tggcattgct
    14581 ggccgatgcg ggtcatatgt tgaccgatac tgccgccctg cttttcgccc tactcgccgt
    14641 gcaattttca cgtcgtcctc ccaccattcg ccacactttc ggttggctaa gactgaccac
    14701 gctcgcggcg tttgtgaatg ccatcgccct cgtggtaatt accattttga ttgtctggga
    14761 ggcgatagaa cgcttccgca cgccgcgtcc ggtcgagggc ggcatgatga tggcaattgc
    14821 cgtggctggg ttgctggcaa atatactttc tttctggtta cttcatcacg gcagcgaaga
    14881 gaaaaacctc aacgtacgag cagcggcatt gcatgtgctc ggggacctgt tgggttcggt
    14941 tggggctatt attgccgcgt tgattattat ctggaccggc tggacacctg ctgaccccat
    15001 tctctcgata gtggtgtcgc ttctggttct gcgtagcgcg tggcgactgt tgaaagatag
    15061 cgtgaatgaa ttacttgaag gtgcaccggt atcgctggat atcgctgaac tgaagcgtcg
    15121 tatgtgccgg gaaatcccgg aagtccgcaa tgtgcaccat gtacatgtat ggatggtagg
    15181 tgagaagccg gtgatgacgc tgcatgtgca ggtgatcccg ccacacgctc acgatgcctt
    15241 gttggatcag atccaacact acctgatgga tcactatcag attgagcacg ccaccattca
    15301 gatggaatat caaccttgtc atgggccaga ctgccacctg aatgaagggg tgtctggcca
    15361 ttcacatcat caccattaat gggacagcgc gcatgagcct ctttcacgtg cgctgttgat
    15421 ccacatccga ctgccgttga gcgcaataaa ggtcaggatg atgtactcca gagacatggc
    15481 gtaaacgccc tgaagtgcaa aaataacgac gctaatcacg ttaataatca cccacaacag
    15541 ccagttttcc acatacttac gcgtcatcag aagcattgcc acgatagata acaccatcat
    15601 gcatgaatcc cagaacggga aagcgtccgg ttgcagttca ggcatcacaa cctgtaatcc
    15661 taatgcttgc atgatcatga ctgccacgcg ggtcaaaaat gcaaacaccg gattgataaa
    15721 taccgtcatc agaccaatcg aaacaacgca aaccgccaac cagctgagcg ccttcggcaa
    15781 tggtaaccag cgaattttca actccgcctc gttctgactg gtttgtcgcg accacgcata
    15841 ccaaccgtaa atattcgcgg caaagaaaaa cacctgtaat agcaggctgg catacagctg
    15901 aatctgaaag aaaataatgc caaacaaggt gacgttgatc aggccaaaga agtagttgct
    15961 gatcttctcc agactggcaa ggccaataca cagcaacccg gcgatcgtgc ctaccgcttc
    16021 gatccatgag agatcataac cgcctgctcc tattggtata tgtaccagga tattctgcac
    16081 actaaaaaaa tccatctttc ccccaaagcg taacgttacg ccttattatt cgttatccac
    16141 gtagtgtagc cgcaaaatcc agcatacgat tgagcggcac cagcgccctc tctcgcagcc
    16201 tttcatcaac atgaacctcg tgattgcttc cttcctgttc taatgcctct gcgatggcct
    16261 gaaggccatt catggccatc cacggacaat gcgcgcagct gcggcaggtt gcaccctcac
    16321 ctgcggttgg tgcttccagt aactctttat ctggcaccgc ctgctgcatt ttgtagaaaa
    16381 taccccgatc ggttgccaca ataagcctct gatgtggcaa tgttttcgca gcagcgatca
    16441 gttgactggt ggaaccgacc gcatccgcca tatcgacaat agcttgtggt gattctggat
    16501 gcaccagtat ggcagcatcc gggtattctt cttgcaagcg ggttaacgcc tgagtcttaa
    16561 attcatcatg cacaatacag gcaccctgcc agcatagaat gtctccaccc gtctgttttt
    16621 gcacgtaacg ccccagatgt ttgtcgggtg cccagatgat tttttcaccc aaactatcaa
    16681 gatgatcaat aagttcgacg gcaatgcttg aagttaccac ccaatctgcg cgcgctttta
    16741 ccgcagcaga agtgttggcg tagacgacga cagtacgatc gggatgggca tcgcaaaatg
    16801 cgttaaattc ttcaacaggg cagccgagat ccagtgaaca ttcagcctga agtgtcggca
    16861 tcagaattgt tttttccgga ctgagaattt tggcggtttc tcccataaat ctcaccccag
    16921 cgactaacaa agtagaagcg ggatgctttg caccgaagcg cgccatttcc agagaatcag
    16981 aaatacagcc accggtttct tctgccagtt gttgaatttc gggatcggta tagtagtggg
    17041 caaccatcac cgcattacgt tcttttagca gacgttttat cttctcgcgg taatacgctt
    17101 tttcatcaat gcttaacggc gtcggcttcg gggggaaagg ataaatcgcc gtgtctggat
    17161 caaacattac gctcatctta ccatctcgtt ttacaggctt aacgttaaaa ccgacattag
    17221 cgtaatattc gctgttatcg gtgtaatttg ttttatatgc taaacaagat agtcgaatgg
    17281 tggggaaaag tcactcgaat tacgcctaat tccaccgacg tagagttgct tgcacagtaa
    17341 gctctgacga tgtcatcagg tttacaaagt gaaattgagg atgcctgaat agcaaaaaag
    17401 cgcctttagg gcgctttttt acattggtgg gtcgtgcagg attcgaacct gcgaccaatt
    17461 gattaaaagt caactgctct accaactgag ctaacgaccc atacgggtgt tacctgaaag
    17521 atttctactc ggggccaatc tttaagattg gtgtgtcgtg caggatgact cgcttcgctt
    17581 gccctacggg ccgttgctgg cgcaacgtta tccttcacgc ttaacatctg agtttgatgt
    17641 taaaattggt gggtcgtgca ggattcgaac ctgcgaccaa ttgattaaaa gtcaactgct
    17701 ctaccaactg agctaacgac ccgagtggtg ggtgatgacg ggatcgaacc gccgaccccc
    17761 tccttgtaag ggaggtgctc tcccagctga gctaatcacc cgataatgcg ctggatacta
    17821 caaactactt ccaccgaacc catcgtaatt agtggtgggt cgtgcaggat tcgaacctgc
    17881 gaccaattga ttaaaagtca actgctctac cgactgagct aacgacccgg tggtgggtga
    17941 tgacgggatc gaaccgccga ccccctcctt gtaagggagg tgctctccca gctgagccaa
    18001 tcacccaata ctacgctgga tactacaact aactatgtta gtggtgggtc gtgcaggatt
    18061 cgaacctgcg accaattgat taaaagtcaa ctgctctacc aactgagcta acgacccact
    18121 ttttcgttgc tttcggtttg tttgatatcc cgtggcaacg gcggcatata ttactgattt
    18181 cagacttgag cgcaacaaaa atttcgatgc agatcactca actgcttatg attcgcacga
    18241 cacgaccaga aataatgcaa cttctggtcg tgtgttatgc attacatcgc gttcagacgt
    18301 ttttgtgcct gtttagcgcc atcagtacca gggtatttac tgataacctg ctggtatacg
    18361 gctttcgctt ttgcggtgtc acctttgtcc tgcatgatga cgccgacttt aaacatcgca
    18421 tcagcagcct ttggtgactt cggatagttt ttcactaccg aagcaaaata gtacgccgca
    18481 tcatcttttt tacccttgtt gtagtttaac tgacccagcc aataattggc gtttggcagg
    18541 taagttgaat cagggtaatt tttgatgaaa ttctgaaatg ccaccattgc gtcatcctgg
    18601 cgggatttat cctgcaccag cgcaatagct gcattgtaat ccgtgtttgc atcgccgctt
    18661 ttcaccggcg cgccagcatt cgcagtacca gcatcagctg tcggcgtcgt tgatgccgcc
    18721 gcaccgcttt gatcgctgct ggttgattgc gccgctgcac caccgctgct gaggctgtcg
    18781 atctgcaaca ggatctgctt ttgccgctcc acgacctgat tcagttgata ctgattttcc
    18841 tgaatctgac cacgcaggga atcaatatcg gattgattat cagaaagttg ttgctggagt
    18901 tgggttaaaa gctggctgtg agcattagaa atacgctcaa gttgagtgac gcggtcttcg
    18961 accgagcctg agccgacact actgattggt gcctgagcaa aagcggccca gggggccgct
    19021 ataccaacca gtaacgacag actcaatagt tgatgtctga agttactgct catgcaattc
    19081 tcttagtaaa ccagtaccgc acgacggttt ttggagtatg ccgcttcgtc atgacccagt
    19141 actgcaggtt tttctttacc gtaagaaacg atggagatct ggtctgcaga aacgccttta
    19201 ccctgcaggt acatcttaac ggcgttcgca cgacgttcac ccagggagat gttgtattcc
    19261 ggagtaccac gttcgtccgc gtgaccttct acggtgactt tgtaagacgg gttgctacgc
    19321 aggaagtttg catgtgcatc cagcatttga gcgaagtcag aacggatatc gtacttgtcc
    19381 agatcgaagt aaacgatgtt gttctgctgc agctgttgca tttgcagacg agcctgctct
    19441 tcggaagaca tgttgccgtt gccgccgttc gcatccatac cagtgccggc acccagcatg
    19501 ccttcgctgc cgtcattgct ggcgttcttg ttggaagaac atgccgcaat tgccataaca
    19561 ggcagagcaa tcatcagccc tttcagcact ttgttcagtt gcatttcaat gattccttta
    19621 ctattcaatt aattattatc acagatacgg cgaccaggca gggaatttga cctgtccatc
    19681 agttgccgga agacgcgctt tgaaacgccc atctgtagaa accaaattca gcacggatcc
    19741 catcccctga gaagagctgt agattaccat agtgccatta ggtgccagac ttggcgtttc
    19801 atccaggaac gtggacgaca gaacttgtac gcctcccgtt gccagatctt gtttggcaat
    19861 gtgctgctgc ccaccattgg agctgaccat taccataaat ttaccgtcgc tgctgacatc
    19921 cgcatcctgg ttctgcgaac cttcccaggt aatacgttgt ggcgcaccgc cgttgatatt
    19981 cactttataa acctgcggac gaccggcctg gtcagaagta aatgccaggt tctggctatc
    20041 cgggaaccag gtcggttcgg tattgttact gcgaccatca gtcacctggc ggatctgacc
    20101 agaagccaaa tccattacgt acaggttcag actaccggtt ttcgacaagg cgaatgccag
    20161 tttgctgccg tctggcgaga atgcaggtgc accgttgtga cgcgggaatg aagccacctg
    20221 acgtacagcg ccatttgcca gcgtctgaat aaccagcgcg gaacgaccgc tttcgaaggt
    20281 cacataagcc agtttagaac cgtctggtga ccacgccgga gacatcagcg gctgcggtga
    20341 acggtgaacg acaaactggt tgtaaccgtc atagtcagat acgcgcagtt catacgggaa
    20401 ctgaccgccg ttggtctgaa caacgtaggc aatacgggta cggaacgcac ctttaatgcc
    20461 ggtcagtttt tcaaacactt catcactggc ggtatgacca gcataacgca gccactgctt
    20521 gttcactttg tacgagttct gagcaagtac agtacccggt gcgccgccag tgtcaacaag
    20581 ttgataagca acattgtaag aaccatccgg attcggagtg acctgaccga caactacagc
    20641 gtcaatgccc agtgcggacc atgcagatgg ttgtacttcc tgcgcactac ccggctgctg
    20701 tggcagacga gcgcgatcta acggattaaa tttaccgctg ttacgcaagt cagcagcaac
    20761 gatgccgcca atatcttcag gtgccgcacc aggccccgcc cactggaaag gaacaacacc
    20821 aataggacga ccggaatcta caccgctgtc gatcacaatg cggacttcag catgcagaac
    20881 tgatgcccac agtatgagaa aaccaaatgc tactcgtaat gcctgcttca tcatatctcc
    20941 cttatctgga ccgatggccc acgataattt agcagaatgt taacaaacta aaatacacaa
    21001 aactaccaga accccgtggc aaccggtgcc tgatgttgac cgtccgaaca gtcaacatcg
    21061 cgattacggt ttgaagtcca atggcgcgtt tttgaacact tcatatactg cctggcttgg
    21121 tggtttcggg atcttcgcaa gtttagctgc tgccaacgca gcctgacaaa gtgcgggatc
    21181 gccaccttca ggtttgatat ccagtaacat accatcgggt gccagtttta tgcgcagcgt
    21241 acaggttttg cctgcatagg acgatgcgtc atagaactta ctttcgatag cagatttaat
    21301 ctgcccggca tagttattga tatcggcccc tgatgcgcca ttgtttttag aattaccact
    21361 cccggcaggc gaagcattgt tccctttcgc ccctcccccc gttttcggtg cattcttacc
    21421 agagcttagc tcaccgaaaa tatcatctgc ctctgcggcg gctttttctg ccgctgcttt
    21481 cttatcagct gctgcctttt cagcagccgc tttttctgct gcttttttgt cggctgcagc
    21541 tttcttatca gctgcagcct tttcagcagc cgctttcttc tcagcttctg ctttggcttt
    21601 ttcagcagct tcagttgccg ctttctttct tgcttcagct gcagctgctt ctgccgcttc
    21661 cgctttcttc ttcagtgccg cagcggctgc ctcggctttt ttctgcgctg cggctttggc
    21721 ggcttctgct tctgcttttt tctttgcgtc tgcagccgct ttcttcgctg cttcttccgc
    21781 agctttagca tctgcttcgg ccttcgcttt agcatctgcc gccgctttcg ctgccgcctc
    21841 ttcagcttgc ttctgcttta actcggcctg ttttgcggct tcttcagcct gctttttctg
    21901 ctcctgagcc gctaaccgct ctttctcaag ttgcttcagg cgttcctgtt cagccgcttg
    21961 tttctcacgc agttcttcag cagcctgctg ttccttcatc ttgcgctgtt catcagaacg
    22021 cttcgcgctt gattcctggc tttgcatgcg tttgtactgc tcaactaccg cacctgaatc
    22081 aaccatgaca gcgtcgatgg acgaaccacc gccgcctccg gctgaagctt ctatattctc
    22141 atcgaacgaa ctccagatca gcgccgcaaa taagatgaca tgcagcactg ctgaaataat
    22201 tatcgcccgc ttgagcttgt cgttttgttc ggttgccttt gacactctcg gtttccaaaa
    22261 actgttcgcc tgttacccgc tctctttcaa gcaagggaaa cgcagatgtt tagataggct
    22321 gcgtcattaa accaaccgat ttcacacccg cactatgtaa caagttcagt gctttaatta
    22381 tttcatcgta aggcacatct tttgcgccac cgatcagaaa gaccgttttc gggttggcct
    22441 tgaagcggct ggacacttcc gccaccacct gctctggtgg taaacgctcc aggcgatctt
    22501 tctcaaccac cacggtgtac tgaccaatac cagacacttc aacaatcact ggcggattat
    22561 cgttactgct caccgcctgt gattcagtag cgtctggcag atcgacctcc acgctctggg
    22621 tgatgatggg cgctgtcgcc atgaagatca gcaacagcac cagcagtacg tccagcaacg
    22681 gtacaatgtt gatttcggac ttaagttcgc gacgacctcg tccacgcgct ctggccatga
    22741 cttacccctt attgctctcg ctaacggtaa acgcctggcg gtgcagaatc gcggtaaact
    22801 cttccataaa gttgtcgtaa ttcagttcca gtttgtttac gcgctggttg aggcggttgt
    22861 aggccataac tgccgggata gcggcaaaca gaccaattgc agtcgcaatc aacgcttctg
    22921 cgataccggg cgcaaccatt tgcagtgttg cttgttttac cgccccgagg gcgataaagg
    22981 catgcatgat cccccagacc gtaccaaaca gaccaatata cgggctgatg gagccaaccg
    23041 taccgaggaa cggaatgtgc gtttccagat tttcaagttc acggttcatg gagatacgca
    23101 tagcacgcga cgccccttcc actacggctt ccggcgcatg gctattggca cgatgcaggc
    23161 gcacaaactc tttgaacccg ctgtaaaata tttgttccga accagtcaga ttatcccgtt
    23221 tcccctgact ctcttgatag aggcgagaga gttcgattcc agaccagaat ttatcttcaa
    23281 acgcttcggc ttcgcgcgcc gctgcgttaa gaatacgggt ccgctggata ataatggccc
    23341 aggatgcgat tgaaaaacca atcaaaatca acatgataag tttaaccaga aggctagcct
    23401 tcaggaacaa atcaaggata ttcatgtcag tcactgctta aactccgcga caatagactt
    23461 gggaagcgca cgaggcttca ttttgagtgg gtcaacgcaa acaaccagaa cctctgcttc
    23521 attcagcaaa gtattctcgg cgttgacaat acgttgcgtg aaaaccaaag aggtgccacg
    23581 cattgatgtt atttcagtct gtatttcgag catatcgtcg agccgcgcag gtgcgtaata
    23641 ttccaccgtc attttacgta ccacaaaggc aacgcgttca gccatcagcg cctgctgact
    23701 gaagtgatga tgacgcagca tctctgtgcg tgctctttca taaaaagcga cgtaactggc
    23761 gtggtacacc acaccaccgg catcggtatc ttcatagtag acgcgagccg gccatcgaaa
    23821 cagcgttgta ttcactttac atcccggtaa tgcaacaaaa gttagagctt ttaaacgctg
    23881 ctactatacg cgcgcgattg aggtttggga atgagggcaa gttaagggag cgtaaaaatt
    23941 tatgggcctg gagcggccca taatttttta aagagaattc tgatttaaaa gaagaagaaa
    24001 atcagcccga taatgagaac aatatcggca agcaatgggc aaaaaatccc ttgccaaaga
    24061 accttctgcg gacgaaagcc cacgccgtga atcacaccag cacagacggc ccacatcagc
    24121 aataaaccat gccagatttc cagttcactg gtcttcgcgg caaaacgaga tgggtcccaa
    24181 aacatacatc ctgctaacag aagcgccatc acgaaggaaa gcgcccgcag ggggcgcttg
    24241 tccattaccg catacaaggt cgcgataatc ttactcatca gatgtcttct tgaccggctt
    24301 tgcctgattc gacgtgttca agcgccagcg cggtgattac cccaaacgaa caggcaagaa
    24361 gcgttcccag aatccatgcg aaataccaca tttttagctc cttacttagt acagagagtg
    24421 ggtgttacgt tcaatatctt ctttggtgat acgaccgaac attttccagt aacaccaggc
    24481 ggtgtagagc agaatgatcg gtaccagaac caccgcaacc caggtcatga cgttaagcgt
    24541 cagctggctg gaagttgcat cccacattgt cagacttgcg ttcatcatgg tgctggacgg
    24601 catcacaaac gggaacattg cgataccggc tgtcaggatg atgcaggcca gcgtcaggga
    24661 ggagaacaca aacgcccacg cggctttatc catacgtgca gtcaggatgg tcagcagcgg
    24721 cagaaccaca cccagtgccg gaatagccca cagaattggc gtgttgttga agttaaccag
    24781 ccatgcgcca gcttcacgaa ccacttcttt attcagtggg ttagaggctg cgtaatggtc
    24841 cattgtcgat ttcacgacat aaccatcgat accgtacatc acccatacgc cagccagtgc
    24901 gaaacagacc agtgtcacca gcgcagccac ctgagccgtt gcacgggtac gcaggtgcag
    24961 ttcgcccacg gtacgcattt gcagataggt tgcgccctga gtaatgatca tccctacgct
    25021 caccacgcct gccagcaggc cgaacgggtt aagcaactgg aagaagttac cggtgtagta
    25081 cagacgcaga tattcatcaa cgttgaacgg tacgccctgc aacaggttac cgaacgcaac
    25141 accaattacc agcggcggaa cgaagctacc aatgaagatg ccccagtccc acatgttacg
    25201 ccagcgggtt tcttcaatct tggagcggta gtcaaaaccg accggacgga agaacaaaga
    25261 cgccagcacg aggatcatcg ccacatagaa gccggagaac gcagcggcat agaccatcgg
    25321 ccaggcagca aagagtgcgc cgcccgcggt gatcagccaa acctggttac cgtcccagtg
    25381 tggtgcaatg gagttaatca taattcgacg ctcggtgtcg ttacgaccga ggaaacgggt
    25441 gagcatgccc acccccatgt cgaaaccgtc agtgactgca aaaccaatca gcagaacgcc
    25501 aaccagcagc caccagataa aacgcaatac ttcataatcg atcatttgac gactcctgtc
    25561 ttagcgtgcc ggctgagtag tcgtggaaga ctgctcaaag tgatagcgac cggttttcag
    25621 gctgcttggg ccgaggcgtg caaatttgaa cattaagaac aattctgcca ccaggaacag
    25681 ggtatacagg ccgcaaatca gcaccattga gaagatgaga tcgcctgcgg tcagtgacga
    25741 attcgccaca gctgtcggca gcacttcacc gatagcccac ggttggcggc catattcagc
    25801 cacgaaccag cccgcttcta cagcaatcca cggcagcgga ataccgtaca gcgcggcgcg
    25861 cagcagccat tttttctcgc caatgcggtt gcggatgaca ctccagaaag agagcgcgat
    25921 gattgccagc agcaggaagc cacacgccac cataatacgg aacgcgaagt acagcggcgc
    25981 tacacgcgga atggagtctt tagttgcctg ttgaatctgc gcttcagtcg catcagccac
    26041 gtttggcgta tagcgtttca gcagcagacc gtaaccgagg tctttcttca tgctattgaa
    26101 ctggtcacga accgcctggt cggtagaacc agaacgcagt tgttcgagca gagagtacgc
    26161 cttcatcccg ttacgaatgc gttcttcatg ctgcaccatc agctctttca ggccgataac
    26221 cggggtatcc acggaacgcg ttgcaatgat gcccagtgcg taagggatct gaatcgcaaa
    26281 tttgttcgtc tcctcttcct gatcaggaat gccgaacaga gtaaaggcag caggcgcagg
    26341 ttgcgtttcc cactcggctt caatagcagc cagtttggtt ttctgcacgt cgcccatttc
    26401 gtagccggat tcatcaccca gaacaataac agacagaaca gcagccatac cgaagctggc
    26461 agcgatagca aaggagcgtt tagcgaaggc gaagtcacga cctttcagca tataccatgc
    26521 gctgataccg aggatgaaca tcgcgccagt cacataacca gacgctacag tgtgaacgaa
    26581 tttcacctga gcaaccgggt taagcaccag ctcggagaag ctcaccatct ccatacgcat
    26641 agtttcaaag ttgaaatcgg acgcgattgg gttttgcatc cagccgttcg caaccagaat
    26701 ccacagtgcg gacaggtttg aaccgagcgc caccagccag gtgacacaca tatgctgaac
    26761 tttacccaga cgatcccaac cgaagaagaa cagacctaca aaggtggatt cgaggaagaa
    26821 ggccatcaga ccttcgattg ccagcggcgc accgaagata tcccctacat agtgggaata
    26881 gtaagaccag ttagtcccga actggaactc catggtcaga ccggtagcca cacccagagc
    26941 gaagttgata ccaaacaact tgccccagaa cttggtcata tctttataaa tctgtttgcc
    27001 ggagaggacg tagaccgttt ccataatggc cagcaggaac gccataccga gcgtcagtgg
    27061 cacaaaaagg aagtggtaca tcgcggtcaa ggcaaactgt aagcgcgaca gttcgactat
    27121 atctaacatc atgactcctt gctcatcgca tgaagactcc gagagtgaac cccgttagaa
    27181 agggtcacac gcatgcccca atagaaattt gtttgaacac tttcatcata ccatgtgaat
    27241 gcacacaaaa acggcgtaaa gaaaggttgc aaacatgtta ataaaaactc aaattgatcc
    27301 cacgtatata ttacgccgca aaatccttac aataaacagg tttttgttga agcaaatttg
    27361 catttttcga cggtgatcaa tttatagcta aattaccgcc tttcagccaa tttgatcgag
    27421 aacaatttat ctctttttga tgcccatttc caagacttat acattgataa atatcaattc
    27481 ctacaaatta tgttaatcat gtttcaataa ggtaacttta gtgacattta tgtttaaaat
    27541 gtgtgagtta taaggctgaa attagtttcg gttggcaatt aaagataaaa agagacgaag
    27601 caaaaacagc acggttgacc ttaattcttt ttttggtcac tggctaatac gacgcagagt
    27661 ttcaggatta ctaataaagg cataaatcca cccccgccga tattaacatt taattaactt
    27721 ataattatat tataattaac tcacccaggg ttattatttt gttaaaaata aagccacata
    27781 tacgtggctt gagagtgaag ataaacgcaa aattacctga tgcgctacgc ttgccagtgt
    27841 ctacatcatc tctgcaatat attgaatttg cctgcttttg tagaccgaat aaagcgttca
    27901 tgccgtatcc ggcatgaaca aagcgccctt tgtcaacaat ctggccgcgc atatgtggct
    27961 tcggtttgat tgctattcag gcaagccggt aactgaacgt ccgtgactgg ccgggtaaaa
    28021 aaggccccga tagatttgaa ccttgatttt cctcggtggt aatgtgttca tccatcatcg
    28081 tttctgagca agaaatcacc tcgcgactga aagcaacagt cgcatcacag gttgctgatt
    28141 cagccggatt aaacagccgt aaaatcactt cttgtcggtc ttcagctttc ttaagtgcgc
    28201 ttatcaggca tcccactggg ggcattttca acaaactata actttccggc acgttgaatc
    28261 cggctttgtt gagcttcatc gcatcccatg ggattttgtt gtaacactgt actggagtca
    28321 gccatgctcg cgcctgctga gctacaccag cggcggttgg cgtaccggta taactcaata
    28381 aacttaggcg acaagaaagc agaccacgta gttgtgagtc cgggactggc attttaattc
    28441 ccgaaggccg cccaggcctt aaaagcagat cttctttgcc cagtaagccc acgccacgca
    28501 gcaacgtaat ggcaaaggtt ttcttctctt caccgatgac ttcaaattca cgtaaccctt
    28561 cgctaaagac agccatgccg ttacgccctt cctgtaaggc aacatagttg agcatattcc
    28621 ataccggaac cggcgcttct ttccagcctt cttgctgcca gttgttcatt gcactgtcgt
    28681 tcacggggcg cgttagcgaa ccaaactgcg tatctgccag aacactgtcg gtgttaaaag
    28741 gtgtagggac caggacacga aggcgatgat cgtcagcctg gttatcaagg ttgatatcca
    28801 catcaatacg cctgctgtta tgactaagag tgacaaccaa caccacccct actctgccag
    28861 tggattgccg ggcgctgcgt tctgacaaat tgagcggcac tgccatgtca tagcggataa
    28921 cagccctgct ctgccaggct tcatgaataa tatcgcattg cggtttcgcg ttcgctgcgg
    28981 taattaccca ctcttctttt gcgggtgaat agtcatattc atcaccatca tcagagcttt
    29041 cttcaa
//
LOCUS       DAJVUY010000033        28871 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.033, whole genome shotgun sequence.
ACCESSION   DAJVUY010000033 DAJVUY010000000
VERSION     DAJVUY010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28871
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.033"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ72_001346"
     CDS             complement(457..2148)
                     /gene="fruA"
                     /locus_tag="OQQ72_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HCS2011134.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAVARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
     gene            complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ72_001347"
     CDS             complement(2165..3103)
                     /gene="fruK"
                     /locus_tag="OQQ72_001347"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS2011135.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ72_001348"
     CDS             complement(3103..4233)
                     /gene="fruB"
                     /locus_tag="OQQ72_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HCS2011136.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFAVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4601..5782
                     /gene="setB"
                     /locus_tag="OQQ72_001349"
     CDS             4601..5782
                     /gene="setB"
                     /locus_tag="OQQ72_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HCS2011137.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALTREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINIPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRTKD
                     V"
     gene            complement(5779..6033)
                     /locus_tag="OQQ72_001350"
     CDS             complement(5779..6033)
                     /locus_tag="OQQ72_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS2011138.1"
                     /translation="MECRPGCGACCTAPSIFSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAS"
     gene            6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ72_001351"
     CDS             6188..6760
                     /gene="yeiP"
                     /locus_tag="OQQ72_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HCS2011139.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            6983..8449
                     /locus_tag="OQQ72_001352"
     CDS             6983..8449
                     /locus_tag="OQQ72_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS2011140.1"
                     /translation="MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT
                     DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN
                     AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS
                     APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV
                     SFPGTMVDRIVPAATDESLAEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA
                     GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLNE
                     QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMNGSQKLPQRMLAGIRIHLGRE
                     TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE
                     VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ72_001353"
     CDS             8567..9553
                     /gene="yeiR"
                     /locus_tag="OQQ72_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding GTPase YeiR"
                     /protein_id="HCS2011141.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWTVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ72_001354"
     CDS             9592..10305
                     /gene="lpxT"
                     /locus_tag="OQQ72_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HCS2011142.1"
                     /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ72_001355"
     CDS             10717..11283
                     /gene="mepS"
                     /locus_tag="OQQ72_001355"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HCS2011143.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            11464..13020
                     /locus_tag="OQQ72_001356"
     CDS             11464..13020
                     /locus_tag="OQQ72_001356"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS2011144.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGGETPEQARWLSEPGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            13102..14916
                     /locus_tag="OQQ72_001357"
     CDS             13102..14916
                     /locus_tag="OQQ72_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS2011145.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQQLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSHPAVRPVYSLGIDTWWYDVNKAAKLPSARQQGE"
     gene            14917..16011
                     /locus_tag="OQQ72_001358"
     CDS             14917..16011
                     /locus_tag="OQQ72_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HCS2011146.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            16011..17036
                     /locus_tag="OQQ72_001359"
     CDS             16011..17036
                     /locus_tag="OQQ72_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011147.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA
                     FDPNKAV"
     gene            17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ72_001360"
     CDS             17038..18627
                     /gene="yejF"
                     /locus_tag="OQQ72_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HCS2011148.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKLQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(18631..18975)
                     /locus_tag="OQQ72_001361"
     CDS             complement(18631..18975)
                     /locus_tag="OQQ72_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011149.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ72_001362"
                     /pseudo
     CDS             complement(19308..20491)
                     /gene="bcr"
                     /locus_tag="OQQ72_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ72_001363"
     CDS             complement(20519..21214)
                     /gene="rsuA"
                     /locus_tag="OQQ72_001363"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HCS2011150.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            21363..23123
                     /locus_tag="OQQ72_001364"
     CDS             21363..23123
                     /locus_tag="OQQ72_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS2011151.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ72_001365"
     CDS             23248..23532
                     /gene="rplY"
                     /locus_tag="OQQ72_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCS2011152.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVMNMQAKAEFYSEVLAIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ72_001366"
     CDS             complement(23671..24678)
                     /gene="yejK"
                     /locus_tag="OQQ72_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HCS2011153.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEESFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            24860..25087
                     /locus_tag="OQQ72_001367"
     CDS             24860..25087
                     /locus_tag="OQQ72_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HCS2011154.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ72_001368"
     CDS             25107..26867
                     /gene="pbgA"
                     /locus_tag="OQQ72_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HCS2011155.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRPQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            26942..27018
                     /locus_tag="OQQ72_001369"
     tRNA            26942..27018
                     /locus_tag="OQQ72_001369"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26976..26978,aa:Pro,seq:ggg)
     gene            27237..28478
                     /locus_tag="OQQ72_001370"
     CDS             27237..28478
                     /locus_tag="OQQ72_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000101915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2011156.1"
                     /translation="MARKTPPLTTVQIKAARPAEKEYTLQDGGGLFLLVKPSGSKLWR
                     FSYYRPSDKKRILLSFGSLDDVSLADARKRRSEYRALISAGTDPQGHEKKKREAEARR
                     QGNTFENVAAAWYQVKISQNLAPNTIKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVL
                     TPIKERGNLETLKRVLQRVNEVMDYAANSGLIDANPAMNVRKAFPSPVKKHMPTIRPE
                     QLPELMQALSVSATERQTRLLIEWQLLTVTRPAEASSTRWDEINLDAKQWTIPAGRMK
                     MRRDHVIPLSGQAMAVLEAMKPISHHRNYVFPSLKDPQQPMNSQTANAALRRMGFAGV
                     LVSHGLRAIFSTAANEEGFEPDVIEAALAHVDTNEVRRAYNRSNYIEKRIVLMRWWGE
                     FVEAAATGVTLASGKRGIRAV"
BASE COUNT         7057 a         7497 c         7184 g         7133 t
ORIGIN      
        1 agcctataat tacgacataa tccttttcgc gcatagcaca tcctctggta aaaaattacc
       61 aaccctgtca atccacaaga atatagatac tgcaaagacg gtttaaacat gtgttcatat
      121 ttaaacatgt gctcatagca tgcatgtttt acgtaaagta aattaccgcc agagaggcaa
      181 aatgggcaga tttgagcagg ctcacaaaat gcgattaaat gcctgaatta caaaagcgag
      241 gaatttgtga cgggatgcac agaacgggaa caataaaaaa ggcagaaaat aatctgccct
      301 tgaggaaata accttagtgt ttgatgaacg tttcaagttt ctactgaaag ataaaaccat
      361 ttaaattcat aaaattacat tcacaaaccg gtcattctct ttgcgctcat caaatgttac
      421 agggcaggaa atttctgccc tgtaacacac cttttattac gctgctttcg ctactgcgtc
      481 cacttccgga cgtttcagga aggcataggc caaacccgcc accagcgtac cggcaataat
      541 tgctaccagg taacccagta ccggcgtaat agcgccaggg atcagcagaa caaacagacc
      601 accgtgcggt gccatcagtt tcgcaccaat cgccattgag attgcgccag tcagcgcccc
      661 acccacgata cagcacggca gcacacgcat cggatcacga gcagcaaacg gaattgcacc
      721 ttccgaaatg aagcacagtc ccaataccag agcggctttg ccaccttcct gctgcgcttt
      781 gtcgaatttg cgacgcgcca ccattgttgc cagacccatt gccagcggtg gcaccatacc
      841 tgccgccata atcgccgcca tcgggccata ggtttgagta ctcagcagac ccacaccgaa
      901 tgcgtacgct gctttgttta ccggaccgcc catgtcagta cacatcatgc caccgaggat
      961 cgcccccagc agaaccgcat tcgcagtccc catggtctgc agccagtgag tcagcccttc
     1021 gagaatgcca gcaactggtt taccgatcag gtagatcatc gccagaccga ccaccagact
     1081 ggaaattagc ggaatgatca ggatcggttt cagcgcctcc atactctgtg gcagtttcag
     1141 ttgcgtactg attaacttcg caatgtaacc agccaggaag ccagcaatta taccgccaat
     1201 aaagccagaa ccggtgctga ccgccagcat accgccaatc agacccggcg tgaggcccgg
     1261 acgatcggca atggagaagg caatataacc tgccagtacc ggcaccatca gcgcaaaggc
     1321 tgaaccaccg ccaatctgca tcagcgccgc tgccaacgta cccggctctt taaacgcttc
     1381 gataccaaaa gcaaaagaaa gcgcgataca cagaccacct gcgacgacca tcggcagcat
     1441 ataagagacg cctgtcagca agtgacggta agcgcctgca ctctctttct taccttcagt
     1501 ggtcgccgtt tgagctttgc ccgccggttc atacggcgtt gcttcagcaa ccgctttatc
     1561 cagttcctgc gcggttttct tcagcgccag accggtagag gtacgataca tcggtttacc
     1621 agcaaatttc gccagatcca cttcgatatc tgccgccaca atcaccagat ccgctgctgc
     1681 gacttcttca ggggtgattg cattgcccgc gccaacagaa ccacgggttt caactttcac
     1741 ccaccagcca cgttttttcg cttcggtttc aatggcttca gccgccataa aggtgtgtgc
     1801 tacgccagtc gggcaagcag tcaccgcaac tacgcgtttc ggaccgctgg cagcaaccgg
     1861 tgctgtcgca gcgaccggcg cagtgtaagg tttcgcatgg cctttggctt cactcaggaa
     1921 cagctcaggg tgcgcaactg cccgggaaat atcacccagc cagacatttt taccgttcag
     1981 cgcgctgtca ttcgggatgg aatcaccgag aacaatcgcc atttctgcgt cgttcggatt
     2041 gtcgatgatt tccagttttg cttttcgcgc caccgcgccc agcagggtct tcgccatata
     2101 ggcgcgtgcc tgaccgagat tagcgtcaat aatcagcagc gttttcatta tgcctctcct
     2161 gctgtcagtt aaaaggttgt aagtcgacgc gcgccatcat tgcggccaac tgcggacgat
     2221 cggtaatacc cacattgctt tgacttaccg ccagggctgc aacagctgtc gccagacgca
     2281 gtgtgtgttc actggattca cgcatcagca agccataaat caggccacca accatagaat
     2341 cccctgcgcc aacggtgctt acgacatcga ctgacggtgg tttggcgatc cattcgccgg
     2401 aggcattaac ccaaagcgcg ccttcggcac ccagtgaaat aacaacatgc gcaatacctt
     2461 gttcacgtag cgcatgtgca gcttcaatca catctttcat ttcaggcagt ttacggcctg
     2521 cccaaatttc caactcgcgg cggttaggtt tcaccagcca cggtgccgct ttcaaacctg
     2581 ctactaacgc ttcacggcta ctatcaaaga taatgcaagg acactgacta cgcaggcgag
     2641 tcatccagtc ggtgaacgct tccgggctga cgcctgacgg taagcttccg ctgacacaga
     2701 ccatatcgaa ctgaccgagc cagctcagag aatcagtcac aaagcgttcc cagtcggcgg
     2761 gggtgacttc aaaacccgag aagttgaagt cggtcacttc gccgtctttt tccgtcagct
     2821 taacgttaat tcgggtgcgc ccctgtacaa cctggaaacg gttggcaatg cccagctcgc
     2881 tgaacagttg ctgaaaacca tcctgattgt ctttacccag gaagccgcca acggtgacat
     2941 caattcccag gtcttttaat actttggcca cgttgatgcc tttacccgcc gcatgcagac
     3001 cggtggtttt caccaggttc acttcgccgc gttcaatttc cgggcagaaa ccaacaaggt
     3061 cataagccgg attaagggtg atcgtagcaa cacgtctgct cattatgcgc cctccccaag
     3121 accagcagcg atagcgtcgc caatggcttt cagcgcctgt tcagcatctg caccctgggc
     3181 ggtaaagcgt aggcgatgac ctttcttaac gccaagtgcc acaactttca tcagactacg
     3241 tccgtttgcc ggtttgccgg tgccatcaag gtttgtcacg gtaatatcac tgttaaattg
     3301 tttaatggta ttgaccagca tggtacctgg acgagcatgc aggccgtgtt cattgcgcac
     3361 cacaaactcc gcgcttaaca cgtcgtcggt cggcgcatca tcgctggtca gcagcgccag
     3421 caacgttgcc gcatctgctt tcagcaagcg gtcagcttta ttgtcgagca ataaatcagc
     3481 gagacgctta agaaccgcga tgggctgatc gtcattcatc gccacactca ccagcatggc
     3541 tgccgtttcg ccgtccacag caaaagcatt tgccgcacgg cttaccgcaa tcgcgctacg
     3601 cagattgcct tcggcgctat cgctcagcca gataccctgt ccgagattca gcggttgttc
     3661 attgatggct ttggtgacga aagtggcgtc aactgccccc gcctctttca gacgcgcagc
     3721 gttcagcgcc tgaagagtca gcagatcgct ggcgacgata tccagcgtca gcatttcgtt
     3781 gtcgagcttc agctgctcac tctgcttttc gcccatcagt aatgcgcgaa gttcttctgc
     3841 tgttgttgct gacttcagtt gttcagcaac ggaatcatcg ctcagtacgt gggtcagctg
     3901 gcgtagcagg cccagatgtt catccgagct ggcagcaata ccgattgcca cgtacgctac
     3961 ctgaccgtca ccccaggtga cgccttccgg gaactgaaat acctgaacgc cggttttcag
     4021 cacctgatcg cgggtgtcgg tagtgccgtg tggaatagca ataccattgc cgaggaacgt
     4081 tgaggtttgc tgttcgcgcg ccagcatgcc attgacgtag ccttctgcta cattaccggc
     4141 ctgcaccagc gccgcagcga cctggcgaat cgcctcttct ttgtctccgg ccttttcgcc
     4201 cggatggatg tcctgtacgg ataactggaa catagttctc ctctcttgct gaattgaaac
     4261 gattcagcct ctatgagaaa aaaagcgcca acctggctta gggttaaaga caagatcgcg
     4321 ctgaaacgtt tcaagaaagc ataatacttc tgtttcagca cgcaaggaaa gccgtaaagt
     4381 tatgagcaaa agtttgatgt gctgcacatt tttttgtcat ttttcctaat tgctgatggg
     4441 aaaatccgtt atcagcaatt tcatttcagc agcgtcagca gccaatcagc aacagtgaaa
     4501 tggcattttg attattcgtg gcgcttttga tttcgctgtc tgtttatttt ctgacaagca
     4561 gcgtaaactc cgcgtcttcc tcttccagtg atagacctgc atgcataact cccccgcagt
     4621 ctccagcgcg aaatcgtttg acctgacctc gacggcgttt ttaatcgttg cctttctcac
     4681 cggtattgcg ggtgctctgc aaaccccgac actcagtatt ttccttaccg atgaagtaca
     4741 tgcccgtccg gcgatggtgg gattcttctt taccggcagc gctgtcattg ggattctggt
     4801 aagtcagttt ctcgctgggc gctctgataa gcgcggcgat cgcaaatcgc tgattgtctt
     4861 ttgctgcctg ttaggcgtgc tggcctgcac cctttttgcc tggaatcgca actactttgt
     4921 tttgctattc gttggcgtct ttcttagcag ctttggctcg accgctaacc cgcaaatgtt
     4981 tgcccttacc cgtgaacatg ccgacaaaac cggacgtgag gcggtgatgt tcagctcttt
     5041 tttacgcgct caggtttcac tggcatgggt cattggccca ccgctggctt atgcgttagc
     5101 gatgggtttc agctttacgg taatgtatct gagcgcagcg gtagcgttta ttgtttgcgg
     5161 cgtgatggtg tggctgtttt taccgtcgat gcaaaaagag cttccgctgg cgaccggcac
     5221 ggttgaagcg ccgcgccgta accgtcgcga tacgctactg ctgtttgtca tttgtacatt
     5281 gatgtggggc tcgaacagcc tgtacatcat caacataccg ctatttatta tcaacgaact
     5341 gcatcttccc gagaaactgg ccggtgtgat gatggggacc gccgccgggc tggaaatccc
     5401 gacgatgttg attgccggat atttcgccaa acgtctgggt aagcgtttct taatgcgcgt
     5461 tgctgccgtg ggtggcgtct gtttttacgc aggaatgctg atggcgcatt cacctgccat
     5521 tctgttgggc ttgcagctgc taaatgctat ttttattggc attctgggcg gcatcgggat
     5581 gctctatttt caggatttga tgcccggtca ggcaggttca gccaccacgc tctataccaa
     5641 cacgtcgcgc gtgggctgga tcatcgcagg atcagtggcg ggcatcgtcg ccgagatctg
     5701 gaattatcac gctgtgttct ggtttgcgat ggtgatgatt atcgccactc tgttttgctt
     5761 actgcggact aaagatgttt aagacgcggt cagcatttcc agatcgataa gccaggtcat
     5821 ggcctgctga cgcgagttac cgcacatttc agcgctggct tgtaagcctg cacagacttt
     5881 cggtcgcagt ggcgaggtga aaattttaca gcgttgctgt tcatcaagct gaatgcaggg
     5941 cgtattggcg ggcttgccat ctggcatacc gggaataggg ctgaaaattg aaggggcagt
     6001 gcaacacgcc ccgcaacccg gacggcattc catacgttgt tctcttaagg ttaaccaccg
     6061 gattgatgag cgcgcacagt accacctttt ttgcaccagc aaaagtgcga ataccacttg
     6121 cccgaaaggc ccgtcgcgag tactttgtcg cgatattttt gacattttcg actacaggaa
     6181 tttttcgatg ccaagagcga acgaaattaa aaaaggtatg gtactgaatt acaacggcaa
     6241 actgctgctg gttaaggata ttgatattca gtcgcccact gcccgcggtg ccgctacgct
     6301 gtacaaaatg cgtttttctg atgtccgtac cgggctgaaa gtagaagagc gtttcaaagg
     6361 tgatgatatc gttgacaccg tgacgctgac ccgccgttac gttgacttct cctatgtcga
     6421 tggcaacgaa tatgtcttta tggataaaga agactatacc ccgtatacct tcaccaaaga
     6481 tcagattgaa gaagagttgc tgtttatgcc agagggcggc atgccggaca tgcaggtgct
     6541 gacctgggac ggtcaactgc tggcgcttga gctgccgcag accgttgatc tggaaatcgt
     6601 tgaaaccgca ccaggcatca aaggggcatc tgccagcgcc cgtaacaaac cggcgacatt
     6661 gagcactggt ctggtgattc aggtaccaga atacttaagc ccgggcgaaa aaattcgtat
     6721 ccatatcgaa gaacgccgtt atatggggcg tgctgactaa cttcagccgc atgcagaaaa
     6781 gggatagctc aggctgcccc ttttttaatt tattatacca atcttctatt ttgcgcttcc
     6841 tgaacacctt acgccctcaa ttttcactcg ttgattgatc gccctcacac ttcatcgcat
     6901 taacaatcca gaccaatttc aattgctgtc atataacttt acactgtcat tgttaattta
     6961 tcgttactaa gacgtgactc ctatgaagac aattgcctcc gttacgctcc cgcatcatgt
     7021 acacgctcca cgctacgatc gccagcagtt gcaatcacgt atcgttcatt ttggctttgg
     7081 cgcctttcac cgcgctcatc aggcgttact gaccgatcgt gtgctgaatg cccagggcgg
     7141 cgactggggg atctgtgaaa tcagcttgtt cagcggtgat caactgatga gccagctccg
     7201 cgcacagaac catttatata ccgtgctgga gaaaggtgcg gacggcaatc aggtgataat
     7261 tgtcggtgcc gttcacgaat gccttaatgc aaaactggat tccttagcgg caattattga
     7321 gaaattttgc gagccacagg tggcaattgt ttccctgacg attaccgaaa aaggctattg
     7381 tattgacccg gccaccggtg cactcgacac cagtaatccg cggattattc acgatctaca
     7441 aacccctgaa gaacctcact ccgcaccggg tattctcgtc gaagcactga aacgccgccg
     7501 tgagcgcggc cttacaccgt ttaccgtgct ctcctgcgac aatattcccg acaatggcca
     7561 tgtggtgaaa aacgcggtgc tgggaatggc agaaaaacgt tcgccagaac tcgccgggtg
     7621 gataaaagaa cacgtcagtt ttccgggaac catggtcgac cgcattgttc cggctgcaac
     7681 cgacgaatca ctggcagaaa tcagccagca tctgggggta aatgatccct gcgcgattag
     7741 ctgcgaaccg tttatccagt gggtggtgga agataacttc gtcgctgggc gtcctgcctg
     7801 ggaagtcgca ggtgtacaaa tggtgaatga tgtcctgcca tgggaagaga tgaaactgcg
     7861 tatgcttaat ggcagccact cttttctcgc ttatctgggt tacctttcag gattcgccca
     7921 tatcagtgat tgcatgcagg atcgcgcatt tcgccatgcc gccagaacat taatgctgaa
     7981 tgagcaagcg ccgacactac aaattaaaga tgtcgattta acacaatatg cggacaagtt
     8041 aattgctcgt tttgctaatc cggcgctgaa acataagacc tggcaaatcg caatgaatgg
     8101 tagccagaaa ttaccgcaac gtatgctggc aggtattcgc atacatctgg ggcgcgaaac
     8161 ggactggtcg ttgctggcat taggcgttgc tggctggatg cgttacgtca gcggcgttga
     8221 tgatgccgga aatgccattg atgttcgcga tccgcttagc gataaaattc gcgaacttgt
     8281 tgcgggcagc agcagtgaac aacgcgtaac cgccctgctt tccctgcgtg aagttttcgg
     8341 tgatgatctg ccagataacc cgcattttgt gcaggccatc gaacaagcct ggcaacaaat
     8401 cgtacaattc ggcgcacatc aggcgctatt aaacaccctc aaaatttaac gatttctgcg
     8461 gttaaagcgg atgaagctca ccttcgtccg ctctcccctt ctcttttctg ccttttttag
     8521 ccaggattaa cgctcagtta acttaccaga gtattgcgga gccgttgtga ccaggaccaa
     8581 cctcatcacc ggttttctcg gcagcgggaa aaccacgtcg attcttcatc tgttagccca
     8641 taaagatccc aacgaaaaat ggacggtact ggttaatgaa tttggggaag tcggaattga
     8701 tggtgctttg ctcgccgata gcggcgcatt gctgaaagag atccccggcg gctgcatgtg
     8761 ctgcgttaat ggtttaccca tgcaggtagg gttgaatacc ttactgcgtc agggaaaacc
     8821 agaccgcttg ttgatagagc cgaccgggct gggccatccg aaacagatcc tcgatctgtt
     8881 aaccgcacca gtctatgaac cgtggataga tctgcgcgcc accttgtgca ttctcgatcc
     8941 acgcttgctg ctggacgaaa aaagcgccag caatgaaaac ttccgtgacc agctggctgc
     9001 cgcagacatc attgtcgcca ataaatccga ccgtgcgacg cccgaaagtg agcaagcgct
     9061 acagcgttgg tggcagcaaa atggtggcga tcgacaatta attcacagtg agcatgggaa
     9121 agttgacggt catcttctgg atttgccgcg tcgcaattta gccgagttgc ccgccagcgc
     9181 cgcgcattct catcagcatg tcgtgaaaaa agggttagca gcgttaagcc tgccagagca
     9241 tcaacgctgg cgtcgcagtc tgaacagcgg gcaaggatat caggcctgcg gctggatatt
     9301 cgacgctgat acggtattcg acaccattgg cattctggaa tgggcgcgac ttgcaccggt
     9361 ggaacgcgtc aaaggcgtgc tgcgtattcc cgaagggctg gtacgaatca accgtcaggg
     9421 cgatgacctg cacattgaaa cgcaaaacgt tgcgccaccg gacagccgta ttgagctgat
     9481 ttccagcagc gaagctgact ggaatgcctt gcagagcgcg ctgttgaagc ttcgtttagc
     9541 gactaccgcg taaggttgcc tgcgtttttc agtaagataa ttagagaaaa tatgattaaa
     9601 aatttgccgc aaatagtgtt gttgaatatt gtcggcctcg cgctgtttct ttcctggtat
     9661 attcccgtta atcatggatt atggttgccg attgatgcgg atatttttta tttctttaat
     9721 cagaaactgg tcgaaagtaa ggccttttta tggctggttg cattgaccaa caatcgcgct
     9781 ttcgacggtt gttctctgct ggcgatggga atgttgatgc tgagtttctg gctgaaagaa
     9841 aacgccccag gcagacgacg tatcgtgatt attggtctgg taatgctatt aactgcagtg
     9901 gtattaaacc agctgggtca ggcattaatt cctgtaaaac gggccagccc aacattgacg
     9961 tttactaata ttaaccgcgt cagcgaactg ctctctgtcc ccacgaaaga tgcctcacga
    10021 gatagctttc ccggcgatca cggcatgatg ctgcttattt tttcggcatt catgtggcgt
    10081 tatttcggta aagttgcagg tcttatcgcc cttattattt ttgtggtttt tgcgtttccc
    10141 agagtaatga ttggcgcaca ctggtttact gacatcattg tcggttcgat gaccgtgata
    10201 ttgatcggtt tgccctgggt gttgctgacg ccattaagtg atcgattaat cacctttttt
    10261 gacaaatcac taccgggaaa aaacaaacat ttccaaaaca aataactcac agtaattaac
    10321 atcatcaggt ttatttttat agtgaggata atcctgatga tgcgcaccgt gctttcatct
    10381 atcgaacgca aaaatcattc tctaagtaaa tgaatggatt gcatgcgttt cactcaatcg
    10441 tactttaatt gaccaatccc gcttattaac tttctgtatc actttttctt ataaaaaatc
    10501 atgtaaaacc gctcgccaag accgcaccaa tcgggtaatc tcgaactcgt tttgcctcgg
    10561 cggtagatta tcctcacagc atataatttt gtgcgttagt ccacagattt ggccttaagg
    10621 aattgtttca acatgcccag gtaattagtc tcgtgtcgct tggcattttt ttataacgat
    10681 atttgtcgtt aaggacttca agggaaaaca aacaacatgg tcaaatctca accgattttg
    10741 agatatatct tgcgcgggat tcccgcgatt gcagtagcgg ttctgctttc tgcatgtagt
    10801 gcaaataaca ccgcaaagaa tatgcatcct gagacacgtg cagtgggtag tgaaacatca
    10861 tcactgcaag cttctcagga tgaatttgaa aacctggttc gtaatgtcga cgtaaaatcg
    10921 cgaattatgg atcagtatgc tgactggaaa ggcgtacgtt atcgtctggg cggcagcact
    10981 aaaaaaggta tcgattgttc tggtttcgta cagcgtacat tccgtgagca atttggctta
    11041 gaacttccgc gttcgactta cgaacagcag gaaatgggta aatctgtttc ccgcagtaat
    11101 ttgcgtacgg gtgatttagt tctgttccgt gccggttcaa cgggacgcca tgtcggtatt
    11161 tatatcggca acaatcagtt tgtccatgct tccaccagca gtggtgttat tatttccagc
    11221 atgaatgaac cgtactggaa gaagcgttac aacgaagcac gccgagttct cagccgcagc
    11281 taataaaccg tttggatgca atcccttggc tatcctgacg agttaactga aagcactgct
    11341 taggtagtgc ttttttgttt tcattcatca gagaaaatga tgtttccgcg tcttgatcca
    11401 ggctatagtc cggtcattgt tatcttttaa atgttgtcgt aatttcagga aattaacgga
    11461 atcatgttca tacgcgctcc caattctgga cgtaagctcc tgcttacctg cattgtagca
    11521 ggcgtgatga ttgcgatact ggttagctgc cttcagtttt tagtggcctg gcataagcac
    11581 gaagtcaaat acgacacact gattatcgac gtacaaaagt atctcgatac ctattttgcc
    11641 gacctgaaat ccactactga ccggcttcag ccgctgacct tagatacctg ccagcaggct
    11701 aaccccgaac tgaccgctcg cgcggcgttt agcatgaatg tccgtacgtt tgtgctggtg
    11761 aaagataaaa aaacattctg ttcatctgcg actggtgaga tggacattcc actcaatgaa
    11821 ttgattccgg cgctcgacat taataaaaac gtcgatatgg cgatcttacc cggcacgccg
    11881 atggtgccga acaaacccgc aatcgtcatc tggtatcgca accctttgct gaaaaatagc
    11941 ggtgtgtttg ccgctctgaa tctcaacctg acgccttctc tcttttatag ttcacggcag
    12001 gaagattacg atggcgtcgc cctcattatt ggcaatactg cgctatctac cttttcttca
    12061 cgtttgatga acgttaatga attaaccgac atgcctgtcc gtgaaactaa aattgcgggc
    12121 attcctctga ccgttcggct ttatgcggat gactggacat ggaacgatgt gtggtacgca
    12181 tttttactgg gcggcatgag tggaactgtc gttggcctgc tctgctatta cctgatgagc
    12241 gtacgtatgc gccccggcag agaaatcatg accgccatca agcgcgaaca attttacgtg
    12301 gcgtatcaac cggtggtgga tacacaagct ttgcgagtaa cgggcctgga agtactgcta
    12361 cgctggcggc atcctgtcgc gggagaaatt cccccggatg ccttcattaa ctttgccgaa
    12421 tcgcaaaaga tgattgtgcc gctgactcag cacctgtttg agttaattgc ccgcgatgcc
    12481 gcagaattag aaaaagtgct gccagtaggc gtcaaatttg gtattaacat tgcgccggac
    12541 catctgcaca gcgaaagctt taaagcagat atccagaaac tgctcacttc cctgcccgca
    12601 caccatttcc agattgtgct ggaaattacc gagcgcgata tgctgaaaga gcaagaagcc
    12661 acacaactct tcgcctggct gcactcggtc ggcgtagaaa ttgctattga tgacttcggc
    12721 accgggcaca gcgcgcttat ctatcttgag cgttttacgc tcgattatct gaaaattgac
    12781 cgtggattta tcaacgccat cggtacggaa acgatcactt cacccgtact tgacgcggtg
    12841 ctgacgctgg cgaaacgcct caatatgctg acggttgctg aagggggcga aacgccggaa
    12901 caggcgcgat ggctaagcga acccggcgtt aatttcatgc aaggctactg gattagtcgc
    12961 ccgttaccgc tggacgattt tgttcgctgg ctgaagaaac cgtatacgcc gcagtggtaa
    13021 ggtgtgctta cgtcccttat tattcatagt gaaagcatgc cggattgcgg ctaatgatga
    13081 gtaaaaggaa atccgttgca gatgattgtg cgcatactgc tgctgtttat cgccctgttc
    13141 accttcggtg cgcaggcgca ggctatcaag gaaagctatg cctttgccgt gctgggcgaa
    13201 ccccggtacg catttaattt caaccatttt gattatgtga accccgccgc gccaaaaggt
    13261 gggcagataa cgttgtcagc cctcggtacc ttcgataatt tcaaccgcta tgcactgcgc
    13321 ggcaacccgg gcgcacgcac cgagcagttg tacgacacgc tatttacgac ttccgatgac
    13381 gaaccaggca gttattaccc gctgattgct gaaagtgcac gctatgctga cgattattcc
    13441 tgggtggagg tcgctattaa tccgcgcgcc cgttttcatg atggttcgcc cattactgcc
    13501 cgcgatgtag agtttacttt tcaaaaattt atgaccgaag gcgtgccgca atttcgtctg
    13561 gtctacaaag gcaccaccgt caaagccatt gcaccgttaa ccgtgcgcat tgagttagct
    13621 aaacccggca aagaagatat gctgagtctg ttttcgctgc cggtatttcc agaaaagtac
    13681 tggaaggatc acaaacttag cgacccgctc gccacgcctc cgcttgccag tggtccgtac
    13741 cgcgttacgt cctggaaaat ggggcaaaat attgtctatt cccgtgtgaa agattactgg
    13801 gcagcaaact taccggtaaa ccgtggacgc tggaatttcg acaccattcg ctacgattat
    13861 tacctcgatg ataatgtcgc ctttgaagcg tttaaagcag gtgcctttga tttgcgtatg
    13921 gaaaacgacg ctaaaaactg ggccacgcgt tataccggta aaaatttcga taaaaaatac
    13981 atcatcaaag atgagcaaaa gaacgaatca gcccaggata cgcgctggct ggcgtttaat
    14041 atccaacgtc cggtattcag cgatcgccgg gtccgggaag caatcactct cgcctttgac
    14101 tttgaatgga tgaacaaggc gttgttttac aacgcctgga gtcgcacgaa cagttatttt
    14161 cagaataccg aatacgcggc cagaaattac cccgacgccg cggagctggt gcttctggca
    14221 ccaatgaaaa aagatctacc gccagaagtc ttcacacaaa tctaccagcc gccggtatct
    14281 aaaggcgatg gctacgatcg tgacaacctg ttaaaagccg acacacttct caacgaagcg
    14341 ggctgggtgc tgaagggtca gcaacgcgtt aatgccacaa cgggtcagca actcagcttt
    14401 gaattattgc ttcccgcaag cagcaatagt cagtgggtat tgccgttcca gcacagcctg
    14461 caacggctgg gtatcaacat ggacattcgc aaggtggata actcgcaaat caccaaccgc
    14521 atgcgcagtc gcgactatga catgatgccg cgcctatggc gggcgatgcc gtggcccagt
    14581 tccgatttac agatttcctg gtcatcggaa tatatcaatt ccacttataa tgcccccggc
    14641 gtgcaaagcc cggttatcga ctcactgatc aaccaaatta ttgccgcgca gggaaataaa
    14701 gaaaaattat tgccgttggg gcgagcactg gatcgcgtat taacgtggaa ttattacatg
    14761 ctgccaatgt ggtacatggc ggaagaccgt ctcgcctggt gggataaatt ctcccacccc
    14821 gctgtacgcc ctgtttacag cctgggtatc gatacctggt ggtatgacgt taataaagcg
    14881 gccaaactgc cgtcagccag gcaacaggga gagtagatgg gcgcttacct gattcgccgt
    14941 ctgttgctgg tgatcccaac attatgggcg attatcacca tcaacttttt catcgtgcaa
    15001 attgcgcctg gcggtccggt cgaccaggcc atcgccgcca ttgagtttgg taatgccgga
    15061 gtattacccg gcgcaggcgg tgaaggtgtt cgtgccagcc atgcgcaaac gggtgtcggc
    15121 aatatcagcg acagtaatta ccgtggcgga cgcggattag atccagaagt gatcgctgag
    15181 atcactcatc gctacggttt tgataagccg atccacgaac gttacttcaa aatgctctgg
    15241 gactacatcc gctttgattt tggtgatagc ctgtttcgca gcgcctcggt gctgacgctg
    15301 attaaagaca gtctgccggt ttccatcacc ctcggattgt ggagcacgct gattatctat
    15361 ctggtgtcga ttccgttagg cattcgcaaa gctgttcata atgggagccg ctttgacgtc
    15421 tggagtagcg catttatcat tatcggctac gccattccgg cctttttgtt tgccatcctg
    15481 ctgattgtct tcttcgcggg cggcagctat ttcgacctgt tccctctacg cggcctggtt
    15541 tccgctaact ttgattcgct gccgtggtat cagaaaatca ccgattatct gtggcatatc
    15601 acgctgccgg tgctggcgac ggtgattggt ggctttgcgg cgctgaccat actgacaaaa
    15661 aactcattcc ttgatgaagt gcgcaagcaa tacgtggtga ccgcgcgtgc gaaaggggta
    15721 agtgaaaaaa atattctctg gaaacatgtg ttccgcaacg ccatgctgct ggtgattgcc
    15781 ggttttccgg cgacgtttat cagcatgttt tttaccggct cgctgctgat tgaggtgatg
    15841 ttttcactca atggtctggg cttactgggc tacgaagcga ccgtctcgcg cgattatcct
    15901 gtaatgtttg gtaccttgta tattttcacc ctgattggcc tgctgctgaa tattgtcagt
    15961 gatatcagct atacgctggt tgatccgcgt attgattttg agggacgtta atgtcgcgac
    16021 tcagccccgt caatcaggcc cgttgggcgc gttttcgtca taaccgtcgc ggctactggt
    16081 cgttatggat tttcctcgtc ttgtttggtt tgagtttgtg ttcagagctt atcgccaacg
    16141 ataaaccatt gctggtacgt tatgacggca gttggtattt cccgttgttg aaaaactaca
    16201 gcgaaagcga ttttggcggc ccgctggcaa gtcaggctga ttatcaggac ccgtggctga
    16261 aacaacggct ggaaaataac ggctgggtac tgtgggcacc gattcgcttt ggtgctacca
    16321 gtatcaactt tgctaccgat aagcccttcc cttctccacc ctcccggcaa aactggctgg
    16381 gaacggatgc caacggcggc gatgtgctgg cacgcattct ctatggcacg cggatctcgg
    16441 ttctgtttgg cctgatgctg actctctgtt ccagcgtgat gggcgtgctg gcgggggcgc
    16501 tacaaggcta ttacggcggt aaagtcgatc tctggggaca acgctttatt gaagtatggt
    16561 cggggatgcc gacgctgttt ttgattattt tactttccag cgtcgtacag cctaacttct
    16621 ggtggctgct ggcaattact gtcttgtttg gctggatgag tctggtcggc gtggtgcggg
    16681 cggagttttt acgtactcgt aatttcgact acattcgtgc ggcgcaggcg cttggcgtca
    16741 gcgatcgcag tatcatcctg cgtcatatgt tgcctaatgc catggtcgcg accctcacct
    16801 ttttaccgtt tattttatgt agttcgatca ccaccctgac ctcactcgat ttcctcggct
    16861 tcggtctgcc gctcggttca ccgtcactcg gtgaactgct attacaaggg aaaaataacc
    16921 ttcaggctcc gtggcttggg atcaccgcct tcttgtcggt ggcgatatta ttgtctttgc
    16981 tgatctttat tggtgaagcc gtccgcgacg catttgatcc taataaggcg gtgtagcatg
    17041 acgcaaactc tgttagcgat tgaagatttg tcggtgggtt ttcgccatca gcaaaccgta
    17101 cgtacagtag tcaatgatgt ttcactacag attgaggctg gcgaaacgct ggcgctggtg
    17161 ggtgagtcag gttcaggcaa aagcgttacc gcgctgtcaa ttttacgcct gctcccttcc
    17221 ccgccggttg aatatctctc cggcgatatt cgttttcgtg gcgaatcgct gcttcatgcc
    17281 agcgatcaaa cgttgcgcgg tgtacgcggt aataagatcg ccatgatttt tcaagagccg
    17341 atggtgtcgt taaatccatt gcataccctg gaaaaacagc tttatgaagt gctttcactc
    17401 caccgcggga tgcgtcggga agcggctcga ggcgaaattc ttaactgcct tgatcgcgtt
    17461 ggtatccgcc aggcggcaaa acggctgaca gattatccgc atcagctctc cggcggcgaa
    17521 cgccagcggg tgatgattgc gatggcgctg ttaacgcgac cggaattatt aattgccgat
    17581 gaaccgacca ccgcactgga cgtctctgtc caggcgcaga ttttacagct gttgcgcgaa
    17641 ctgcaaggcg agctgaatat gggcatgctg tttattactc ataacctcag cattgtcaga
    17701 aaactggccc accgcgtggc ggtaatgcaa aacggtcgct gtgtcgagca aaattacgcc
    17761 gctacgctat ttgcctcacc cactcatcct tacacacaaa agctactcaa cagtgaaccg
    17821 tcaggcgatc cagtgccgtt gccagaacct gcctcaacgt tgctggatgt tgaacagctt
    17881 caggttgcct tccccattcg caaagggatt ttgaagcgca ttgtggatca taatgtggtg
    17941 gtgaaaaaca tcagttttac gctacgagcg ggtgaaacac tgggtttagt gggcgagtcc
    18001 ggttccggga aaagtacgac gggactggcg ctgctgcgac tgattaattc tcagggcagc
    18061 atcatctttg acggtcagcc actgcaaaat ttaaatcgcc gccagctgtt acctattcgt
    18121 catcgcattc aggtggtatt tcaggatcca aactcctcgc tcaacccacg actcaacgtt
    18181 ttgcagatta ttgaggaagg cttacgggtt caccagccga cgctttctgc cgcacaacgc
    18241 gaacaacaag tgatagccgt gatgcatgaa gtgggattag atcctgaaac acgccaccgt
    18301 tatccggcgg agttctctgg tggtcagcga caacgtattg caattgccag ggcattaatt
    18361 cttaagccct cgctgatcat acttgatgaa ccgacatcat cactcgacaa aacggtacag
    18421 gcgcaaatat tgacgctatt gaaatcattg caacaaaagc tgcaactggc ctatttgttt
    18481 atcagccacg atttgcacgt tgtccgcgcg ttatgtcatc aggttatcgt actgcgacaa
    18541 ggggaagtag tggaacaagg accgtgcgcg cgcgtgtttg ccgcaccgca gcaggagtat
    18601 acgcgtcagc tactggcgtt gagctgacgc ttaaaaagga ttgtagtttg aaaagggttc
    18661 ggcaattgcc acaccaaaat ttttcaatcg gcatgttgca gcaaactcgt cctggcgatt
    18721 tacaaacagg cacggctcac cttcacactc cagcaccgaa cacggaactt cgatgtcgct
    18781 taacgcctgg cttagtttgt acatcaccga ccatgcatta tcaccatccg ggctaagcaa
    18841 tttaagcgcc accaggctgt tgtcaccgca cggtccattt tgcggaatcg gttcaacctt
    18901 cgaacctgcg aaaccagcag accagcgaaa gttctgcggt agacgatgga cgattgagag
    18961 ttgtaatgaa gtcacttatt ttccccggaa gcacatttac ttcacaattt gtttacatca
    19021 attttaacac atcatcaaca atccgtcttt atacagatcg taaagattga tgcctcgcct
    19081 gcgtggcctc tatggctctg atttaagtaa tatctgcggg cgtggtcacg tttgcggggc
    19141 tatatgtacc cgtttctgcg atctaactca acctttttaa ctacaatgat gtgacttttt
    19201 acataaattg attttacata aaataaacat atatcggggg aatgatagat ttgtggttga
    19261 catgcatcaa caaaggaagc cttttagctt cctcgttgtg caatagatca ccgttttttc
    19321 ggtcgactgg cgtacagaca gaagagaatg gagctgcttg cgcagaatgc aattgaccaa
    19381 atcatcggcc atgcagagtt aaaggtcgca agagaaagca atgcgccaac aattgcccct
    19441 atgccaaaac ggaaggttcc tgccagcgaa gatgccgttc ccgccatatg gggaaactca
    19501 tcaagaatga ccgccatcgc attggatgac accatcgaca cacagcccac aaacgccgca
    19561 acgccaacca ccagaatccc agccccagca gcgcactgat gaccatccac gctgccataa
    19621 taaattgtat ccacaacccc gagcggaaca tatttaacgc gccaatgcgg cgaacgaagc
    19681 ggctgttaaa gatggtcatc acgaacagga aaacaatgtt tagtgcaaag taataaccaa
    19741 agttttccgg cgcgacgtgg ttaatttcaa tgtagacaaa cggtccggcg ctcaggaacg
    19801 agaacattcc ggcaaagctg aaaccgctgg ccagcatata actcaggaca cgcttatgac
    19861 ggaacagcgc cgcaaagtta ccaatagtag tacgaatgtg aaaaggctgg cgacgctccg
    19921 gtggtaaggt ttctttgatc agaaagaaga tcattgccga agccagaatc gccgccacgg
    19981 cgaggatcca gaagatgtaa tgccagctca gccacaccag cacccagccg ccaactatcg
    20041 gtgccatcag cggtgcaatg gtcgtcacca gcatgacaaa cgacatcatc cgcgagaact
    20101 cttctttcgg gtagatatca cgcatcaaag cgttgataac catgctggcc gcagccgcag
    20161 ccagcccgtg gaaaaaacgc atcacaatca gctgatcgat ggtttgtgcc aacgcacacg
    20221 ccaccgcggc ggcggcaaac accagcgtac cgccgagcac caccggctta cgcccgaagc
    20281 tgtctgccat cggcccgtag attaactgcc ccaacgcaaa gcccagaata taagtactga
    20341 gggtcatctg cgtactgccc gccggtacgc caaactgcgc tgaaattacc ggtagcgcgg
    20401 gcagatacat atcaatcgac agcggcatca acatggccag caggccaagg ataaaaacaa
    20461 tagcaaacga cgaatgctgt cgggtggtca caacgggctc ctgaaagtca ttgaaaagtt
    20521 agacgacgct ggcaatttct tcttcagtta acggacgata ttcaccgggg gctaaatcag
    20581 catccagcgt aataccgcca atacgttcac gatgcagctc aaccacgtgg ttacccacgg
    20641 cggcgaacat gcgtttcacc tgatgataac gcccttcgct gatggtcaga cgaacctgcg
    20701 ttggggtaat cacttccagc accgcaggct tagtgagatc tttttcgtta tgcagctgca
    20761 cgcctttagc aaattgctct gccgtatcgt cagctacagg tgattccagt gtcaccagat
    20821 aggtcttctc gcaatgatgg cgcggagaag taatgcggtg cgaccactga ccatcatcag
    20881 tcatcagcac cagaccggtg gtatcgatat ccagacgtcc tgcggcgtgc agtttccagg
    20941 ctaccggttc atccagaaaa tagagcaccg ttgggtgatc agggtcgtcc gtggagcaaa
    21001 catagccctg aggcttattg agcatgaagt aacgtggacc atgttgctgc gccagcgggt
    21061 tgccatcgta agcgacatca tgttcaggaa gcagtttgaa cgctgcatta cgaacaattt
    21121 cgccatcgac ggtgacacga ttgccgcgga tttcacgccc ggcaatagca cggctaacgc
    21181 cgagttgctg tgcgataaat ttatcaagtc gcatgtgtgt gattttgcct gtaaaaacgg
    21241 aggtcgggca ttgacccgaa aatctgaact gttgtctgcc cagtatagcg gtctaataac
    21301 atccctcaag ggaaaaagat ccatggcata ctattagcag aataatctac ctacgcgaga
    21361 ccatgatttt tacactccgc ccatatcagc aagaagccgt ggatgccacg ctcaaccatt
    21421 ttcgtcgtca taaaacccct gccgttatcg tgctgcccac cggcgcaggt aaaagcctgg
    21481 tgattgccga actggcacgg ctggcgcgtg gtcgtgttct ggtgctggca cacgtcaaag
    21541 aactggtggc gcaaaaccat gcaaagtatc aggcgctggg gctggaagcc gatatttttg
    21601 ccgctgggtt aaagcgcaaa gagagccacg gtaaagtggt atttggcagc gtgcagtcgg
    21661 tcgctcgtaa tcttgatgcc tttcagggtg aattttcgct gttgattgtc gatgaatgcc
    21721 accgtattgg tgacgatgaa gagagccagt atcagcaaat cctcactcac ctgactaaag
    21781 tgaatcccca cttacgcctg ctggggctga ctgccacgcc ttttcgattg ggcaaaggct
    21841 ggatctacca gttccattat cacggcatgg tacgcggcga tgagaaagcc cttttccgtg
    21901 actgcattta tgagctgccg ctgcgttata tgattaaaca cggctatctg acgccgccag
    21961 aacgactgga tatgccagta gtgcaatacg atttcagccg cttgcaggca cagagtaacg
    22021 ggctgttcag cgaagctgat ctcaaccgtg agctgaaaaa acagcaacgc attacgccac
    22081 atatcatcag ccagatcatg gagttcgccg aaaagcgcaa aggggtaatg attttcgccg
    22141 ccaccgttga acacgcaaaa gagattgtgg gattactgcc tgccgaagat gcagcactga
    22201 ttactggcga cacccccggc gctgagcgcg atgtgttaat tgaagatttt aaagcccagc
    22261 gttttcgcta tctggtcaac gtcgcggtac tgaccaccgg atttgacgcc ccgcacgtcg
    22321 atcttatcgc cattctgcgt cctaccgaat cagtgagtct ttaccaacaa attgtcgggc
    22381 gcggtctgcg tctcgctcct ggcaagactg attgcttaat tcttgattat gcgggtaatc
    22441 ctcacgacct ctacgcgccg gaagttggta caccgaaagg caaaagtgac aacgtcccgg
    22501 tacaggtttt ctgccctgcc tgcggttttg ccaacacctt ttgggggaaa acgaccgccg
    22561 acgggacatt gattgaacac tttggtcgtc gctgtcaggg atggtttgaa gatgacgacg
    22621 gccatcgcga acagtgtgac ttccgtttcc gttttaaaaa ttgcccgcaa tgtaacgcgg
    22681 aaaacgatat tgccgcccgc cgctgccgcg aatgtgacac ggtactggtt gatccggatg
    22741 atatgttaaa agcggcgcta cgactgaaag acgcgctggt attacgctgt agcggcatgt
    22801 ctttacagca tgggcacgac gagaaaggcg aatggttgaa aatcacctat tacgatgaag
    22861 acggcgcgga tgtgagtgag cgtttccgtc tgcaaacgcc cgcccagcga actgccttcg
    22921 agcagctttt tatccgcccg catacgcgca caccgggcat ccctctgcgc tggatcaccg
    22981 ccgccgatat cctcgcccag caagccttac tgcgacatcc ggattttgtc gtcgcccgca
    23041 tgaaaggtca gtactggcag gtgcgtgaaa aagtgttcga ttacgaaggt cgttttcgtc
    23101 gggcgcacga attacgcggt taatggtagt tttgattgat gtataaggcg attgagtata
    23161 gaatctcgcc cgcttttgca tacgcaaagc agatcactta cctgttgctg ggtcgcctgt
    23221 agcaggatta atttaagaga gaaagaaatg tttactatca acgcagaagt acgtaaagag
    23281 cagggtaagg gtgcgagccg ccgcctgcgt gccgctaaca agttcccggc aatcatctac
    23341 ggtggcaaag aagcaccgct ggctatcgag ctggatcacg acaaagtcat gaacatgcaa
    23401 gctaaagctg aattctacag cgaagttctg gccatcgttg ttgacggtaa agaaatcaaa
    23461 gttaaagctc aggacgtaca gcgtcacccg tacaaaccga agctgcagca catcgacttc
    23521 gttcgcgctt aattgctgaa taagttgtaa aaaaccccgc tccggcgggg ttttttgtat
    23581 ctgcagatta tgcctgatta cggtattgct attttttgca ggccagataa ggcgttcacg
    23641 ccgcatctgg cattcagaat acaaaaccga ttaattgccg ccagacgtcc ggcgctgcaa
    23701 ttggtcgcgc aaattcggcg gcgtgccttt aatggtcaag gtatcggttg ctggatccca
    23761 gaagatgcgt tcacctaaca gcatcgcatc aaagttaata gtcaagccac cgccgctacc
    23821 ggcaaacttc gtcaactgac gcagtgtgct acggtctgcc gggaagctct cttccagttc
    23881 gtagcctttt tcagccgcaa acttcgtgaa gctcacttcg cttacgcctg ccagctcttt
    23941 cgacagcgat tccagttcga tctcttcgcc tgcctgcagc tgctcattac agtagctata
    24001 aacctgctgg cgcacgttct gtcgctctgc tttatccagt tgtgcttcgg cagtgaaatc
    24061 atcaaccgct tgcaacagcc cacggttttg cgctttcgcg ttcaatcctt cgctggcccc
    24121 gaggaaatcc ataaagaaat ccgccacttt gcgccctact cgccctttca ggaaagtgag
    24181 atagcgggtg gactctggat tggtttccca ttcggttaaa tcgatacgcg caacaatatc
    24241 cgcatgattg atatcaagat aatgggttgg gttgatgtcg agattttcgt taacgcgcat
    24301 actgctcagg ttgctcagaa ctgccaccag cagatactcc accgccagat aacggtagtg
    24361 gcaaaacagc acgaatccac cgtcagcaaa aggatatttc gctaattcgt cacgcaggcg
    24421 cccggttgcc gcgcggctaa atgccagaaa gtcctcttcg ccctgacgct gtaagcgcag
    24481 cgtctgcgcc agttcactct cttcgctaaa caagccgtaa gctttatttt tggcgctata
    24541 gacccgatgc agttctgcca ccatctcaac gacggtttct gtcggttcca gcaatgaatc
    24601 gcgcaacacc agctcaaggt tctgctcatc acgcttgata agctggtgca gagcaatctg
    24661 gttgatatcc agactcatga taaactctcc tttaagaccg ggcggtattc aaccaccgcc
    24721 ggttaagcga cgcaataaaa gatggcggtc attttacaga aggcagcgta acgagaatga
    24781 tttaacgcat aaaaaagcag aaaaaaaacc gttgctacgg taatatgttg ccctttcatc
    24841 aactaactga tttcgattta tgccacaaat ttcccgctac agtgatgaac aggttgaaca
    24901 attgctcgca gagctgctca acgtactgga aaaacataag gctccgaccg acctttccct
    24961 gatggtgtta ggcaacatgg tcactaacct tatcaacacc agcattgccc cggcccaacg
    25021 ccaggcaatt gccaactctt ttgcccgcgc cttacagtcc tctatcaacg aagacaaagc
    25081 gcactaaggg aaacagataa caggttatgg taactcatcg tcagcgctac cgtgaaaaag
    25141 tctcccagat ggtcagttgg gggcactggt ttgcactgtt caatattctg ctttcgctcg
    25201 tcattggcag ccgttacctg tttatcgccg actggccgac aacgcttgct ggtcgcattt
    25261 attcctacgt aagcattatc ggccatttca gcttcctggt gttcgccacc tacttgctga
    25321 tcctcttccc gctgaccttt atcgtcggct cccagaggct gatgaggttt ttgtccgtca
    25381 ttctggcaac ggcgggaatg acgctattac tgatcgatag cgaagtcttt actcgtttcc
    25441 atctccatct taatcccatc gtctggcagt tggttatcaa cccagacgaa aatgagatgg
    25501 cgcgcgactg gcagctgatg ttcatcagcg tgccggttat tttattgctt gaactggtgt
    25561 ttgcgacgtg gagctggcaa aagctgcgca gcctgacgcg tcgtcgacgc ttcgcgcgcc
    25621 cgctggccgc attcttattt atcgccttta tcgcctcgca tgtggtgtat atctgggccg
    25681 atgccaactt ctatcgcccg atcaccatgc agcgcgctaa cctgccgctt tcgtacccga
    25741 tgacggcgcg acgtttcctt gagaagcatg gcctgcttga tgcgcaggag tatcaacgcc
    25801 gtcttattga gcaaggtaat ccagacgccg tttccgtaca gtatccgtta agcgaactgc
    25861 gctatcgcga tatgggcacc gggcagaatg tgctgttgat tactgtcgat ggcctgaact
    25921 actcacgctt cgagaagcag atgcctgcgc tggcaggttt tgctgagcaa aatatttcgt
    25981 tcacgcgcca tatgagctcc ggcaacacta cagacaacgg catctttggc ctgttctatg
    26041 gcatctcgcc gagctatatg gacggcattc tgtcgacccg tacccctgcg gcgttaatta
    26101 ctgcgcttaa tcagcaaggc tatcagctgg gattattctc gtcagatggc tttaccagtc
    26161 cgctgtatcg ccaggcattg ttgtcagatt tctcgatgcc gagcgtacgc ccccaatccg
    26221 acgagcagac cgccacgcag tggatcaact ggctgggccg ctacgcacaa gaagataacc
    26281 gctggttctc gtgggtctct ttcaatggca ctaacattga cgacagcaat cagcaggcat
    26341 ttgcacggaa atatagccgg gcggcaggca atgtcgatga ccagatcaac cgcgtgctca
    26401 atgcactgct tgattctggc aaactggaca atacggttgt gattatcact gccggtcggg
    26461 gtattccgct gagcgaagac gaagaaacct ttgactggtc ccacggtcat ctgcaggtgc
    26521 cattagtgat tcactggcca ggcacgccgg cgcagcgtat taatgcgctg actgatcata
    26581 ccgatctgat gacgacgctg atgcaacgcc tgctacatgt cagcacacct gccagcgaat
    26641 attcgcaagg tcaggatttg ttcaaccctc aacgccgtca ttactgggtc actgcagcgg
    26701 ataacgatac gctggcaatt accaccccga aaaagacgct ggtgctgaac aataacggta
    26761 aataccgcac ttacaactta cgtggtgaaa gagtgaaaga tgaaaaacca cagttaagtt
    26821 tgttattgca agtgctgaca gacgagaagc gttttatcgc taactgatta attataaatc
    26881 agttagcgaa atatcttact tgcaatcggt gtggaaaacg gtagtattag cagccacgag
    26941 tcggcacgta gcgcagcctg gtagcgcacc gtcatggggt gtcgggggtc ggaggttcaa
    27001 atcctctcgt gccgaccaaa tcgcccaccg gataccaccg gaattaacag tttttagaca
    27061 cgaaaagccc gctaatcctt gattagcggg tttttttatg gtttttagtc accggacatc
    27121 accggattta taagctatca gccggatttt ttagttatac gcttagttat acgggcttgc
    27181 gtataactaa agccgtataa ctaaaaccct gttttttcgt gtggaatcat atacatatgg
    27241 cgagaaaaac acccccatta accacggtgc agatcaaagc agccagacca gcggaaaagg
    27301 aatacaccct acaggacggc ggagggcttt ttctcctggt caaaccgtcc ggatcaaaac
    27361 tctggcgatt ttcctactac cggccatcgg acaaaaaaag aatattgctg agttttggat
    27421 cgcttgatga tgtttccctg gctgatgcca gaaaacgccg tagcgagtac agagcgttaa
    27481 tcagtgccgg aactgacccg cagggccatg agaagaaaaa acgagaggca gaggcccgaa
    27541 gacaagggaa cacgttcgaa aatgtggcgg cggcatggta ccaggtgaaa atcagccaga
    27601 atctggcccc caacacgatt aaagacatct ggcgttcgct ggataaatat gtattcccgt
    27661 tcatcggcaa cacgccaata gataccctca ccgcccgaag gttcgttgaa gtgcttacac
    27721 ccatcaagga gcgcggcaac ctggaaacac tcaagcgggt tttacagcgc gttaatgagg
    27781 taatggatta cgccgccaac agtgggctga ttgatgccaa tccggctatg aatgtgcgta
    27841 aggcgtttcc ctcacctgta aaaaaacata tgccaacaat ccgccccgaa cagctgccgg
    27901 agcttatgca ggctttatca gtatcggcaa cagaacggca gaccagatta ctgattgaat
    27961 ggcagttact gaccgtaacc cgtcccgccg aagcgtcatc aacgcggtgg gatgaaatca
    28021 acctggacgc gaagcaatgg acgatacctg ccggacgcat gaagatgcgc agggatcacg
    28081 ttatcccgct ttccggtcag gctatggcgg tgctggaggc catgaaacca atcagccacc
    28141 accgcaatta cgttttccca agtctgaaag acccacagca gccgatgaac agccagacag
    28201 ctaacgcagc attgcggcgt atgggattcg ctggcgtgct ggtgtctcat ggattacgcg
    28261 ccatattcag cacagcagcg aacgaggaag gattcgagcc ggacgtaata gaggcggcac
    28321 ttgcccacgt cgacaccaac gaagttagac gggcatacaa ccggagcaac tacatagaaa
    28381 aacgcatcgt gctgatgcgc tggtggggcg aatttgtcga ggctgcggcg acgggcgtaa
    28441 ccctcgccag tggtaaaagg ggtatccgag ccgtgtagct gtacagaaaa ccagtaaaaa
    28501 ctacgaaaac catgtaaaac cgtcgtataa ttgcatcaaa tttaacgaca aggccgtgaa
    28561 acatgaaacc gttaagatgc aaaaaaatat cagatgcaat tgcgacgggc tgcaactggc
    28621 cctgatggtt cagcatgaat tttggtcaac ctacgatccg gaggacagaa cgacggcccc
    28681 atcaaaaaaa caggtagtag attttctggt atcccgtggc gcttccagaa atctggcggt
    28741 aagtattgat aaggtcgtac gtccggcatc tatgaagatc ggaggcaggc ccaaaaaatg
    28801 gcggtaacaa tcctggaagc ggcagaaatg ccgctttttt tataattcca tttcaaatca
    28861 tcaatataaa a
//
LOCUS       DAJVUY010000034        28390 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.034, whole genome shotgun sequence.
ACCESSION   DAJVUY010000034 DAJVUY010000000
VERSION     DAJVUY010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28390
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.034"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            69..1321
                     /locus_tag="OQQ72_001371"
                     /pseudo
     CDS             69..1321
                     /locus_tag="OQQ72_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1718..2032
                     /locus_tag="OQQ72_001372"
     CDS             1718..2032
                     /locus_tag="OQQ72_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HCS2011157.1"
                     /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTTKAAPAKT
                     THHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQP
                     AA"
     gene            2125..2208
                     /locus_tag="OQQ72_001373"
     CDS             2125..2208
                     /locus_tag="OQQ72_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011158.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            2308..3129
                     /locus_tag="OQQ72_001374"
     CDS             2308..3129
                     /locus_tag="OQQ72_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCS2011159.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVVLRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(3168..3497)
                     /gene="mdtI"
                     /locus_tag="OQQ72_001375"
     CDS             complement(3168..3497)
                     /gene="mdtI"
                     /locus_tag="OQQ72_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HCS2011160.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(3484..3849)
                     /gene="mdtJ"
                     /locus_tag="OQQ72_001376"
     CDS             complement(3484..3849)
                     /gene="mdtJ"
                     /locus_tag="OQQ72_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HCS2011161.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            4261..5295
                     /gene="tqsA"
                     /locus_tag="OQQ72_001377"
     CDS             4261..5295
                     /gene="tqsA"
                     /locus_tag="OQQ72_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
                     /protein_id="HCS2011162.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA
                     VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM
                     TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMLSIFLLLLTVLF
                     MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI
                     AVLLSDLNKE"
     gene            complement(5320..6708)
                     /gene="pntB"
                     /locus_tag="OQQ72_001378"
     CDS             complement(5320..6708)
                     /gene="pntB"
                     /locus_tag="OQQ72_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HCS2011163.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQDVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(6719..8251)
                     /gene="pntA"
                     /locus_tag="OQQ72_001379"
     CDS             complement(6719..8251)
                     /gene="pntA"
                     /locus_tag="OQQ72_001379"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HCS2011164.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            8775..9719
                     /locus_tag="OQQ72_001380"
     CDS             8775..9719
                     /locus_tag="OQQ72_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS2011165.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            9905..11287
                     /locus_tag="OQQ72_001381"
     CDS             9905..11287
                     /locus_tag="OQQ72_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2011166.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            11324..12046
                     /gene="folM"
                     /locus_tag="OQQ72_001382"
     CDS             11324..12046
                     /gene="folM"
                     /locus_tag="OQQ72_001382"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HCS2011167.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKLGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(12043..12366)
                     /locus_tag="OQQ72_001383"
     CDS             complement(12043..12366)
                     /locus_tag="OQQ72_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HCS2011168.1"
                     /translation="MKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVAS
                     ERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIIC
                     WIKLH"
     gene            12492..13211
                     /gene="rstA"
                     /locus_tag="OQQ72_001384"
     CDS             12492..13211
                     /gene="rstA"
                     /locus_tag="OQQ72_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HCS2011169.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGITICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT
                     MPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI
                     SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRNVDVAISRLRKKLLDNAA
                     EPYRIKTVRNKGYLFAPHAWE"
     gene            13215..14516
                     /gene="rstB"
                     /locus_tag="OQQ72_001385"
     CDS             13215..14516
                     /gene="rstB"
                     /locus_tag="OQQ72_001385"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HCS2011170.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            14592..15521
                     /gene="tus"
                     /locus_tag="OQQ72_001386"
     CDS             14592..15521
                     /gene="tus"
                     /locus_tag="OQQ72_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HCS2011171.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(15518..16921)
                     /gene="fumC"
                     /locus_tag="OQQ72_001387"
     CDS             complement(15518..16921)
                     /gene="fumC"
                     /locus_tag="OQQ72_001387"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCS2011172.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(17064..18710)
                     /gene="fumB"
                     /locus_tag="OQQ72_001388"
     CDS             complement(17064..18710)
                     /gene="fumB"
                     /locus_tag="OQQ72_001388"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS2011173.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            18909..20084
                     /gene="manA"
                     /locus_tag="OQQ72_001389"
     CDS             18909..20084
                     /gene="manA"
                     /locus_tag="OQQ72_001389"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCS2011174.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            20185..21693
                     /locus_tag="OQQ72_001390"
     CDS             20185..21693
                     /locus_tag="OQQ72_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS2011175.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR
                     LTTLQDNTITTSLQYTNGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ"
     gene            complement(21909..23174)
                     /gene="uidC"
                     /locus_tag="OQQ72_001391"
     CDS             complement(21909..23174)
                     /gene="uidC"
                     /locus_tag="OQQ72_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide uptake porin UidC"
                     /protein_id="HCS2011176.1"
                     /translation="MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRA
                     DKPSAGAGRDIYAWVQRGLFDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGD
                     KSFGFALGAVKIKPCENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALG
                     YWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDT
                     SRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETA
                     LVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVN
                     YRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKG
                     REKRDGSTLGDRLNYWDVKMSIQYDFMLK"
     gene            complement(23213..24586)
                     /gene="uidB"
                     /locus_tag="OQQ72_001392"
     CDS             complement(23213..24586)
                     /gene="uidB"
                     /locus_tag="OQQ72_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HCS2011177.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVACVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI
                     ANQVQTPEVIMSIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQ
                     LISDITN"
     gene            complement(24583..26383)
                     /gene="uidA"
                     /locus_tag="OQQ72_001393"
                     /pseudo
     CDS             complement(24583..26383)
                     /gene="uidA"
                     /locus_tag="OQQ72_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
     gene            complement(26771..27361)
                     /gene="uidR"
                     /locus_tag="OQQ72_001394"
     CDS             complement(26771..27361)
                     /gene="uidR"
                     /locus_tag="OQQ72_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator UidR"
                     /protein_id="HCS2011178.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR
                     ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLL
                     DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            complement(27590..28357)
                     /gene="hdhA"
                     /locus_tag="OQQ72_001395"
     CDS             complement(27590..28357)
                     /gene="hdhA"
                     /locus_tag="OQQ72_001395"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HCS2011179.1"
                     /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN
                     ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK
                     PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA
                     SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL
                     GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN"
BASE COUNT         7062 a         7317 c         6812 g         7199 t
ORIGIN      
        1 cagaacaatt cgattttcct aacctatgta taagcctgat ccacaggcat atttagcaag
       61 gatttcaagt gagccgtact acaactgttg atggcgctcc ggcaagcgac actgacaagc
      121 aaagcatttc tcagccaaat caatttatta aacgcggtac gccgcaattt atgcgcgtca
      181 ccctggcgct gttctctgcc ggactggcaa cctttgcact cctctattgt gtgcagccta
      241 tccttccggt gctttcgcag gagtttggct taacccccgc gaacagtagt atttcactgt
      301 ccatttccac ggcgatgttg gctattggtt tgctgtttac tggcccccta tccgatgcca
      361 ttggtcgcaa accagtgatg gtcacggcgc tactgttggc ctccatttgt acgttatttc
      421 gacaataatg accagctggc acggcatttt gattatgcgc gccttgattg ggctttcgtt
      481 aagtggcgtg gcagctgttg gcatgactta tcttagcgag gaaatccacc ccagtttcgt
      541 ggccttttcg atggggttgt atatcagcgg caactcaatt ggcggcatga gcggacgctt
      601 aattagtggt gtcttcacgg actttttcaa ctggcgaatt gctctggcgg caatcggttg
      661 tttcgcgcta gcctcggcgt tgatgttctg gaaaatcctt ccggaatcac gccattttcg
      721 cccgacttcg ctgcgaccta agacgttgtt tatcaacttt cgtctgcact ggcgtgaccg
      781 gggattaccg ttattgttcg cagaaggctt tttgctgatg gggtcgttcg tcacgctgtt
      841 taattacatc ggctatcggt tgatgctttc cccctggcat gtcagtcagg ccgtggttgg
      901 cttattatcg ctggcttatt tgaccggtac acggagctca cccaaagccg gaaccatgac
      961 cacccgctac gggcgcggtc cggtgatgtt gttttcgacg ggggttatgc tgtttggttt
     1021 actgatgacc ttattcagct cgctgtggct gatctttgcc ggaatgttac tcttctcagc
     1081 aggattcttc gcagcccact cagttgccag cagctggatc ggcccccgcg caaaacgcgc
     1141 taaaggccag gcctcctcgc tgtatctgtt cagttactat ctggggtcga gtattgccgg
     1201 gacgctgggt gatgttttct ggcataacta tggctggaac ggcgtcggcg catttattgc
     1261 tctgatgctg gtcattgctc tgctggtcgg gacgcgtttg catcgtcgtc tgcacgcctg
     1321 aaaaataagc ccggactgcg gtaactacac gtccggactt attgcttgct caaaccaacg
     1381 ttaatagcca tcctaaaata gacgaagcgc cagccaattc ccgcagtgcg tctagcgtca
     1441 tcaggattat aagtacccaa ataaacggat tcattttgct gtgtgtcatt tattactgat
     1501 gcgcagttat tctaccgctt tgtaagtagt aaaatagtta acccgatcaa gactactatt
     1561 attggtagct aaatttccct taagtcacaa tacgttatta tcaatgctgt aatttattca
     1621 gcgtttgtac atatcgttac acgctgaaac caaccactca cggaagtctg ccattcccag
     1681 ggatatagtt atttcaacgg ccccgcagtg gggttaaatg aaaaaacaaa ttgagggtat
     1741 gacaatgaaa aaagtattag ctctggttgt tgccgctgct atgggtctgt cttctgccgc
     1801 ctttgctgca gagactgcga cgaccaccaa agcagcgccg gcgaaaacga cacatcataa
     1861 aaaacagcat aaagcagcac ctgcccagaa agcgcaggca gctaaaaagc atcataaaaa
     1921 tacgaaagct gaacagaaag cccctgaaca aaaagcgcag gcagcgaaga aacacgccgg
     1981 gaaacacagt catcagcaac cggcaaaacc tgctgcacaa cccgcagcgt aagttttcaa
     2041 cagtaatgct ggcgcgcccc ctcgcgcctg aaaattacgg tgctaagcgg gtaacgttta
     2101 gcaccgcctt tagcggaggg tagtatggtg ggccgttatc gctttgagtt cattcttatc
     2161 atccttattt tatgcgcact gattgccgct cgtttttatc tttcctgact gtagttatct
     2221 gattttactc ccactttcat cccgtcccgt ctatagtatt tatgagggtt tgcttttaat
     2281 aatcataatt acccaccaga gtgtgatatg cgtacaacca ttgctgtagt gttgggtgca
     2341 attagtttga cgtctgcttt tgtgtttgca gataaaccag acgttgccaa atcggcaaac
     2401 gatgaggtca gcaccctgtt ttttggtcat gatgatcgtg tgccagtgaa tgacacggcc
     2461 caatcaccgt gggatgcggt tgggcaactg gaaacggcca gcggcaattt atgtacggcg
     2521 acgctgattg cacccaatct ggcattaacg gcaggacact gtttattgac acctccaaag
     2581 ggtaaagccg ataaagcagt ggtgctgcgt tttgtgtcaa ataaaggtct ttggcgctat
     2641 gagatccacg acatagaagg ccgcgttgat ccgacactgg gaaagcggtt aaaagcagat
     2701 ggggatggtt ggattgtacc tcccgcagcc gcgccgtggg acttcggatt gattgtgcta
     2761 cgtaatcccc cttctggcat tacaccgttg ccgttatttg agggagataa agccgcgctt
     2821 actgccgcat taaaatcggc tggccgtaaa gtaactcagg cgggataccc tgaagatcat
     2881 ctcgatacgt tgtacagtca tcaaaactgt gaagtgactg gctgggcgca aacgtcggtg
     2941 atgtcacatc agtgcgatac cttgccgggt gacagcggtt cgcctctgat gttgcatacc
     3001 aatgacggct ggcaattaat tggggtgcaa agttcggctc ctgccgcgaa agatcgctgg
     3061 cgcgccgata accgggccat ttctgttacc ggttttcgcg acaagctgga tcaactgtcg
     3121 caaaaataat gttcaaacgc tgcccgactg tgcgggcagc gtgttcatca ggcaagtttc
     3181 accatgatca ttccagccaa cagcaagacc aggccaatcc agcctttacg atttaaccgt
     3241 tgaccaaaca agatccaacc tgcggctaac gtggcggcaa taccaaaccc gccccacaat
     3301 gcataagcga cagacaagtc gatcccttta acggcctgag aaagcgcact aaaggcagcc
     3361 agcaccgccg ccagggagag caagccaaat attttgcgac gaaagccgtc agaaaatttc
     3421 aaaaagacgt tagcaacgat ttccagcacg attgccaatg ccagccaggc ggcgtgaacc
     3481 cattcaaact gcgccatggt ttacctccag ttcaggttta cgcgctttac gggtacctga
     3541 ttttatcaac acaatcccgg cgaccagggt ggttaacccg gcaattttca tcagcgataa
     3601 actttcgtcg aataacaaaa cgctaaacaa ggtaataaat aaaataccga taccttccca
     3661 cagcgcataa gctacgccta aggcgatctt tttaacggcg aaagagagaa atatatacga
     3721 cagagaaatc atcaccagca ttaaaataaa gccgccattt ccctcactga cgctcgccca
     3781 tttcattgat agcgtaccgg taatttctgt agcaatagcc aggcctaata aaatccaata
     3841 aatatacatt gtccttctcc tgcaagagaa ttattttaat tttcgcttaa ttcagcgaaa
     3901 ttaaagtaaa gtggtcaagc cccgcgcata gggcaagctt aggcagaaga aaggactaaa
     3961 gcgcgttgcg ccagtgctgc tcacctacga gcaagatagt ggatgaggta caaagatggg
     4021 taaatgttga aaataaggtc ctgaacaaat tgtccataat attacaatta tccgcagtgt
     4081 tgcttctcgt catcgcggat gataattgtc ctcggtagtt gaacacgcct gatttgtatc
     4141 atagcttaag aattaactca aaatattttc acttctttac ctgagcggtt tgattttcgt
     4201 tatgatgacg gagcgaaaaa gacattatta ttagcaaagg aagaaaaaac ggggacaagc
     4261 atggcaaagc cgatcatcac gctcaatggc ctaaaaatcg tcattatgtt gggaatgctg
     4321 gtcattattc tctgcggtat ccgttttgcc gccgagatca tcgtgccgtt tattctcgca
     4381 ttatttattg ctgttattct taacccgctg gtgcaacaca tggtccgctg gcgagtgccg
     4441 cgtgtactgg cggtgtcgat tttgatgacc atcatcgtga tggcgatggt gttgctatta
     4501 gcttatctgg gttccgcgct caacgagttg acgcggacgt taccgcaata tcgcaactct
     4561 attatgacgc cgctgcaagc tcttgagccg ttgttgcaac gcgtagggat tgacgtctca
     4621 gttgaccagc tggcgcatta cattgatccg aacgcagcga tgacgttgct caccaactta
     4681 ttgacgcagt tatctaatgc catgttatca atatttttat tgctgctgac ggtgctgttt
     4741 atgctgctcg aagtgccaca attgcccgga aaatttcagc aaatgatggc gcgtccggtt
     4801 gaagggatgg cggcgattca acgtgcaatt gacagtgttt ctcattatct ggtgctgaaa
     4861 acagccatca gcatcatcac cggcctggtc gcctgggcga tgctcgccgc actcgatgtt
     4921 cgcttcgctt ttgtctgggg attgctggcc tttgcgctta attacatccc taatattggt
     4981 tcagttctcg cggcaatccc ccctatcgct caggtactgg tgtttaatgg cttttacgaa
     5041 gcgttgctgg tgctggcggg atatctgctg attaatctgg tcttcggcaa tattctggag
     5101 ccgcgcatca tgggacgtgg gctggggctt tccacattgg tggtattttt gtcgttgatt
     5161 ttttggggat ggttgttagg accggtgggt atgctgcttt ccgtgccgtt aacaattatt
     5221 gtcaaaattg cgcttgaaca aacagcggga ggtcaaagca tcgccgttct gttaagcgat
     5281 ctcaataaag agtgacggcc tccgcagagg ccgtcagggt tacagagctt tcaggattgc
     5341 atccacgctg gctttggcgt caccaaacag catgtgggtg ttttccttga agaacagcgg
     5401 gttttgcaca ccagcatagc cagtgttcat cgaacgttta aagacaatca cgtcctgcgc
     5461 tttccacact tccagcacag gcataccagc aataggactc ttcggatcat cctgcgccgc
     5521 cgggttaacc gtatcgttag caccaatcac cagtacggta tcggtatcag caaagtcatc
     5581 gttgatctcg tccatttcca gcacgatgtc atacggtact tttgcttcag ccagcaatac
     5641 gttcatatgt ccaggcaaac gccccgcaac cgggtggata ccgaaacgca cgttgatacc
     5701 acgagcgcgc agtttctcgg taatttcagc gacaggatat tgcgcctgcg cgactgccat
     5761 gccgtacccc ggagtaatga tcactgaatg ggagtttttc agcagttccg ctgtctcttc
     5821 tgcggtgatt tcgcggtgct cgcccacttc ctgatcatcg ccagtagaag agccgtcggt
     5881 gccgaaacca cccgcaataa cgctgataaa ggaacggttc atcgccttac acataatgta
     5941 agaaaggata gcccccgaag aaccgaccag cgcaccggtc acaatcagca ggtcgttgct
     6001 gagcataaag cccgcagccg cagccgccca gccggagtac gagttcagca tcgacaccac
     6061 cactggcata tctgcaccac cgatggaggc gactaaatgc cagccgaata ccagcgcaat
     6121 ggcggtcatt attagcaatg ccagcacttg caggccgacg ctgtccgtgc gaacaaatac
     6181 aatcagcagc aggaaggaaa cgaccagagc cgccaggttc attttgtgac ggtttggcag
     6241 catcaacggt ttagacgaaa tcttgccaca cagtttgccg aacgccacca ccgaacccgt
     6301 gaacgttacc gccccgatga agataccgag gaacacttcc gtcaggtgaa tattgaccag
     6361 aatcggtgcc attcccgcgt catgatgcag atagctgtta aagccaacca gcactgccgc
     6421 cagacccacg aagctgtgca ggatcgccac cagttctggc atttcggtca tttcaacttt
     6481 cttcgccaga cggataccaa ttgccccacc aatgaccatc gccagcaaga tccagccaac
     6541 attacccgta tccggtccaa aaatggttgc gattaacgca atcgccatcc ctgcgatacc
     6601 gaagttgtta ccctggcgag acgtttcatg tttcgaaaga ccggccagac tgaagataaa
     6661 caggatcgcg gcaacaatgt atgcagctgt aactaatcct ccagacatat gttacccctt
     6721 aatttttgcg gaacattttc agcatgcgct gagtcacggt gaagccaccg aaaatattaa
     6781 tgctggctat aagcaccgcg ataaaactaa ggaagctaac ccagccgccc tggccaatct
     6841 gcaacagtgc tccgacaaca ataatccctg aaatcgcgtt ggtgaccgac atcaacggtg
     6901 tatgcagcgc gtgcgataca ttccacacca cgtaataacc gacaacgcag gccagcgcga
     6961 aaacggtgaa gtgcccaaga aactctttcg gcgcaacgct tgccagccaa ccgaaaagga
     7021 tgattgccag cgccatcaac gcgtatttac gccacggtga gcaggcacat ttttcctcag
     7081 ttttcacttc cggtgccgct ttttgtgccg cctgcggctg agctgatacc tgaatcggcg
     7141 gtgccggcca ggtaatttcg cccgcacgga tcacggtcac gcggcgaatc accacatcat
     7201 caaaatcaac agtgatattg ccgtctttct ctttgcacaa cagtttcagc agattaacga
     7261 ggttagtacc gtaaagctgc gaggattgcg tcggcagacg gcccggaaga tcggtataac
     7321 caatcacttt gacaccattt tccgtagtga agatttcacc cggcacggtg tattcacagt
     7381 tgccaccgtt ttgggctgcc aggtcgacaa tcacactgcc cgtcttcatg gagtcaacca
     7441 tttcacgggt aattagcttc ggcgctggtt tgcctggaat aagcgcggtg gtgacaatga
     7501 tatcgacctc ttttgcctgg gcggcaaaga gttccatttc tgctttaatg aacgcgtccg
     7561 acatcacttt ggcatagcca tcgccgctgc ccgcttcctc tttaaaatcc agctcgagga
     7621 attccgcgcc catactttga acttgttctt tcacttccgg acgggtgtcg aatgcacgca
     7681 caatcgcgcc gagactgttt gctgcgccaa tggcggccag acctgcaaca cccgcaccaa
     7741 tcaccatcac ttttgccggt ggcactttcc cggccgcagt aatttgcccg gtaaagaagc
     7801 gcccaaattc atgtgccgct tcaacaatgg cgcgataacc ggcgatgttc gccatcgagc
     7861 ttagtgcgtc cagcgattgt gcgcgtgaga tacgcggcac agaatccatc gccatcacgg
     7921 tcacgttacg ttccgcaagt ttttgcatta attccggatt ctgcgcaggc cagataaaac
     7981 tcaccagcgt tgtcccagga ttcagtaacg caatttcatc atctaacggc gcattgacct
     8041 tcagaatgat ctctgactgc cagacgctat tcccttctac aatttcagcg cccgcttgca
     8101 caaacgcttt atcgtcaaaa cttgccagtt gacccgcgcc gctctctacc gcgacggtaa
     8161 aacccagttt cagcagctgt tccactgttt ttggcgttgc tgcaacacgg gtttcattgg
     8221 ttaaccgttc tcttggtatg ccaattcgca tgatattccc ttccatcggt tttattgatg
     8281 atggtttgcc tgtgtcagga gccacacaag ccgctcatgt acgagctaaa tgttactccg
     8341 ttaaaataaa ttagtaacaa acgccctata acgtactgaa aattatacct gtgatctagc
     8401 gccaaaaatc agtatttcgg cgtgaactcg caaaatatta acgattcagc cgtgatagtg
     8461 ggataaacac cttagaacgc cggataaaga ctgataattg tcttcgacgg tcgggtaaaa
     8521 cgagacatcg ccccggcacg attcactact taacattaaa ttaacttata caattcagtt
     8581 gcttcagtag taatgatgct gatacggctg ttttttaagc atagacggtc atttgagcag
     8641 gattaaaatt ggcttaagga atgtgatatg aaaaatgacg cagacagtta caccgtttaa
     8701 atgcaataat cagccacgtt tctcgttaat aacaatacca gtacctggtt tgcgcaaggc
     8761 gaaggattat ttttatgaag cttaagaaca ccctcctggc gtcggcactg ctttctgcta
     8821 cggcattctc cgttaacgca gcaacagaac tgacaccgga gcaagcggca gcggttaaac
     8881 cttttgaccg tgtagtggtt accggtcgtt ttaatgctat tggcgaagcg gtgaaagccg
     8941 tttctcgtcg cgcagataaa gaaggtgccg cctcttttta tgttgtcgac acttctgatt
     9001 ttggtaacag cggtaactgg cgtgtggtcg ctgacctcta taaagccgat gctgaaaaag
     9061 cagaagaaac aagtaatcgc gtaattaacg gtgttgtcga actgccgaaa gatcaggctg
     9121 ttctgattga accgtttgac acggtcaccg tccagggctt ctatcgtagc cagccagaag
     9181 tcaatgatgc catcaccaaa gcggcaaaag cgaaaggtgc ctactctttc tacatcgttc
     9241 gtcaaatcga tgccaaccag ggcggcaacc agcgtattac tgcattcatc tataaaaaag
     9301 atgctaagaa acgtatcgtc cagagcccgg atgtgatccc ggcagattcc gaagcaggac
     9361 gtgcagctct ggctgccggt ggcgaagccg cgaagaaagt tgagatccca ggtgttgcga
     9421 ctaccgcatc accaagttct gaagtcggtc gtttctttga aacccagtca tcaaaaggcg
     9481 ggcgttacac cgtcacgctc ccggatggca ctaaagtcga agaactgaac aaagcgaccg
     9541 cagcgatgat ggtcccgttc gatagcatca aattctctgg caactacggc aacatgaccg
     9601 aagtctccta tcaggttgcg aaacgtgccg cgaagaaagg tgctaagtat taccacatca
     9661 cccgccagtg gcaggaacgt ggtaataacc tgaccgtcag cgcagatctg tataaataac
     9721 tattcagtta ctcctataag gcggcttgat gccgcctttc gcatttttag tcacaaattt
     9781 ccccgcgacc attgcatgca gacacatctc ttcgtaaaat cccgcgcttc agtggcaaac
     9841 tccattttta tgcgttttgc cctaatattt attcttctta tcacgtttta atcactggat
     9901 atcgatggaa aagaaactgg gactgagcgc actcaccgcg ctggtattaa gctcaatgct
     9961 gggcgcgggt gttttcagtc tgccgcaaaa tatggcggca gttgccagcc cggcagcact
    10021 gctcatcggc tggggtatta ctggcgctgg cattttattg ctggcctttg ccatgctgat
    10081 cctcacgcgc attcgtcccg aacttgacgg cggtatcttt acctatgccc gcgaagggtt
    10141 tggcgagcta atcggctttt gttccgcatg gggatactgg ctgtgcgcag tcatcgccaa
    10201 cgtctcctat ctggtgatcg ttttttccgc gttaagcttt tttacggaca cgccggaatt
    10261 gcgcctgttc ggcgatggta atacctggca atcgatcgtc ggtgcatcgg ctttattgtg
    10321 gattgttcac tttttgatcc tgcgcggggt gcaaaccgct gccagcatta acctggtggc
    10381 gacactggca aaattgttgc cgctgggtct gtttgttgtg ctggcgatga tgatgttcaa
    10441 actggatacc ttcaagctcg acttcaccgg acttgtactt ggcgtacccg tttgggaaca
    10501 ggtgaaaaac accatgctga tcaccctgtg ggttttcatt ggtgtggaag gtgccgtggt
    10561 tgtttctgcg cgtgcgcgta ataaacgtga tgttggcaaa gcgacactgc tggcggttct
    10621 ctccgctctg ggcgtttact tgctggtaac gctgctttcg ctgggtgtgg tggcacgtcc
    10681 tgaactggct gaaattcgta acccgtcaat ggccggtctg atggtggaaa tgatgggacc
    10741 atggggcgaa atcatcatcg ctgccagttt gatcgtttcc gtttgcggcg cgtacttaag
    10801 ctggaccatc atggcggcag aagttccgtt cctggctgcc actcataaag cattcccacg
    10861 catttttgcg cgccagaacg cacaagctgc gccatccgcc tcactgtggt tgaccaacat
    10921 ctgcgtgcaa atttgtctgg tactcatctg gctgaccggt tccgattaca acacgttgct
    10981 gaccatcgcc tcagaaatga ttctggtgcc ctatttcctg gtcggcgcgt tcttgctgaa
    11041 aatcgcaacc cgtccactgc ataaagcggt aggtgtcggt gcctgcattt atggcttatg
    11101 gttattgtac gcctctggtc caatgcactt gctgttatcc gttgttctgt atgcgccggg
    11161 gctgctggtt ttcctgtatg cgcgcaaaac gcatacacat gataatgtac tgaaccgtca
    11221 ggaaatggtg ctgattggca tgctgttaat tgcctcagtt ccggcgacct ggatgctggt
    11281 gggataacgt tcatcccatc gttggatagc aaaggagata acgatgggta aagcccagcc
    11341 cttgccaata ttaattactg gcggaggtcg tcgcatcggc ctcgccctcg cctggcattt
    11401 cattaatcaa aagcaaccgg tgattgtcag ctatcggacg cactatccag ccattgatgg
    11461 actgattaag gcaggtgcgc agtgtattca ggctgatttt tcgaccaacg acggtgtgat
    11521 ggcgtttgcc gatgaagtac taaaaagcac ccatggtctg cgtgctattt tgcataacgc
    11581 cagtgcgtgg atggcggaaa aactgggtgc gccactggcc gacgtactgg cttgcatgat
    11641 gcagatccac gttaataccc catacctgct caaccatgcg ctggaaagat tactgcgtgg
    11701 gcacggacac gccgccagcg atatcattca ctttaccgat tatgtggtgg agcgcggtag
    11761 cgacaagcat attgcgtatg ctgcaagcaa agcggcactg gataatatga cccgctcgtt
    11821 tgcccgcaag ctggcaccgg aagtgaaagt gaattctatt gctccatcgc tgatcctgtt
    11881 taatgaacat gatgatgccg aatatcgaca acaggcgctg aataaatcac tgatgaaaac
    11941 cgcgcctggc gagaaagaag tgatcgacct ggtcgattac ttacttacca gttgctttgt
    12001 caccggacgc agtttcccac ttgatggcgg tcgtcatctg cgttaatgca gctttatcca
    12061 gcatataatc aacacccatg cgcttatccc ccaacacgca acagaaccaa caaaagcggc
    12121 gggcaagcgc atcattccgg tgaaatacca cagcgacacc aggtaaacaa aatagggaat
    12181 aatcgaccac atactaaaaa tgatggttgc gcgtaaggct tcaatgccgc gttcgctggc
    12241 aacaatataa tgcgcgataa gcgcaaaggt cgggaaaagt ggaatcagcc cggcgatata
    12301 ataatttttc gtttttgcta aaacaccaat caacagcact accagcgcac cgagcgcggc
    12361 tttgatttta ccttaacact tccataacaa gtcatcagta gaatacctga tgaaaacttg
    12421 tttagaaacg attgatagta agtaaaaaca gcgcggtgta ttgtgacgtt tttatatcta
    12481 ccgtgaatgt tatgaacact atcgtatttg tggaagatga tgcggaagtc ggttcactga
    12541 ttgccgcgta cctggcaaaa catgatatgc aggttaccgt agagccgcgc ggcgaccagg
    12601 ccgaagaaac cattttgcga gaaaatccgg atttggtgtt actcgacatc atgctaccag
    12661 gcaaggacgg cattaccatt tgtcgtgatt tacgcgcaaa gtggtctgga ccgattgttc
    12721 ttctaacctc tctcgatagc gatatgaacc acatcctggc actggaaatg ggtgcctgcg
    12781 actatattct caaaacgatg ccccctgctg ttttgctagc gcgtttacgt ttgcatttgc
    12841 gtcagaatga gcaagccaca ctgaccaaag gtcttcagga aacgtctctg actccctaca
    12901 aagccctgca tttcggcacg ttgaccatcg atcccatcaa ccgcgtagtc accctggcta
    12961 acactgaaat ctcgctctcg acagctgatt tcgaattatt gtgggaatta gctacccatg
    13021 ccgggcaaat catggaccgc gatgcattgc tgaaaaattt acgcggcgtc agttatgacg
    13081 gactggatcg taacgtggac gtggctattt cgcggttaag aaaaaaactg ctcgataacg
    13141 ccgcagaacc ttatcgcatt aaaactgtgc gtaacaaagg ctatcttttt gcgcctcatg
    13201 catgggaata agcgatgaaa aaactgttta tccagtttta cctgttattg tttgtctgct
    13261 tccttgtgat gtctctgctg gttgggttgg tgtacaaatt taccgccgaa cgcgcgggca
    13321 aacagtcgct ggatgatttg atgaacagtt cgctgtatct gatgcgcagc gaattgcgtg
    13381 agatcccccc acacgactgg ggtaagacgc tgaaagagat ggatttaaat ctctctttcg
    13441 atctgcgtgt cgagccactg agtaaatacc atcttgatga tatttccatg caccgactgc
    13501 gtggcggcga aattgtcgcc ctggacgatc agtacacgtt tttgcagcgt atcccgcgca
    13561 gccactacgt gctggcagtt ggtcctgttc cttatcttta ttatctccat cagatgcgat
    13621 tgctggatat cgccctgatc gcttttattg ctatttccct cgcctttccg gtgtttatct
    13681 ggatgcgtcc gcactggcag gatatgttaa aactggaagc agcggcgcaa cgatttggcg
    13741 atgggcatct ctatgagcgt atccactttg atgagggttc gagctttgaa cgacttggta
    13801 tcgcatttaa ccagatggcg gacaatatca acgccttgat tgccagcaaa aaacagctta
    13861 ttgacggtat cgctcacgaa ctgcgaacac cgttagtgcg cctgcgttat cgactggaga
    13921 tgagcgataa cctgagcgcc gccgagtccc aggcgttgaa tcgtgatatc agtcaacttg
    13981 aagctttaat tgaagagctg ctgacttatg cccgactcga tcgcccacaa aacgagcttc
    14041 atcttagcga accagacctg ccgttgtggc tgtcaacgca tctggcagat attcaggcag
    14101 taacgcccga taaaacggta cggataaaaa cgctcgtgca aggccattat gcggcgttgg
    14161 atatgcgctt aatggagcgc gtgctggata atttgctcaa taacgccctg cggtactgcc
    14221 attcaacggt tgaaaccagc ctgctactgt cggggaatag agcgacatta attgttgagg
    14281 atgatggccc agggattgcc ccagaaaacc gcgaacatat ctttgaacct tttgttcgcc
    14341 tcgatcccag ccgggatcgc tcaaccggcg gctgcgggct ggggctggca attgtccact
    14401 ctatagcact ggcaatgggc ggtacggtta attgtgacac cagcgaactg ggtggtgctc
    14461 gcttctcgtt tagctggccg ttatggcata acatcccgca atttacctct gcctgacact
    14521 acgcgcacga tggtcaagtc accaccattg tgctataaat taaggatgtt gtaactaaag
    14581 tggttaatat tatggcgcgt tacgatctcg tagaccgact caacactacc tttcgccaga
    14641 tggaacaaga gctggctgca tttgccgctc atcttgagca acacaagcta ttggttgccc
    14701 gcgtgttctc tttgccggag gtaaaaaaag aggatgagca taatccgctt aatcgtattg
    14761 aggtgaaaca acatctcggc aacgacgcgc agtcgctggc gttgcgtcat ttccgccatt
    14821 tatttattca acaacagtcc gaaaatcgca gcagcaaagc cgctgtccgt ctgcctggcg
    14881 tgttgtgtta ccaggtcgat aacctttcgc aagcagcgtt ggtcagtcat attcagcaca
    14941 tcaataaact caagaccacg ttcgagcata tcgtcacggt tgagtcagaa ctccccaccg
    15001 cggcacgttt tgaatgggtg catcgtcatt tgccggggct gatcaccctt aatgcttacc
    15061 gctcgctcac cgttctgcac gaccccgcca ctttacgttt tggctgggct aataaacata
    15121 tcattaaaaa tttgcatcgt gatgaagtcc tggcacagct ggaaaaaagc ctgaaatcac
    15181 cacgcagtgt cgcaccgtgg acgcgcgagg agtggcaaag aaaactggag cgagagtatc
    15241 aggatatcgc tgccctgcca cagaacgcga agttaaaaat caaacgtccg gtgaaggtgc
    15301 agccgattgc ccgcgtctgg tacaaaggag atcaaaaaca agtgcaacac gcctgcccta
    15361 caccgctgat tgcactgatt aatcgggata atggtgcggg cgtgccggac gttggtgagt
    15421 tgttaaatta cgatgccgac aatgtgcagc accgttataa acctcaggcg cagccgcttc
    15481 gtttgatcat tccacggctg cacctgtatg ttgcagatta acgcccggct ttcatactgc
    15541 cgaccatctg ttctggccgt acccagctgt caaactcggc ttcgctaaga taccccagcg
    15601 caagggccgc agcttttaag gtcagccctt ctttatgcgc ttttttggcg atctccgcgg
    15661 ctttgtcata accaatgtgg gtgttaagcg cagtcaccag catcagcgat tcattgagta
    15721 attgattgat tcgctcacga ttcggttcaa tacccactgc gcagtgtttg ttaaaacttt
    15781 ccatgccatc tgccagcaag cgcaccgatt gcaggaaatt atggatcacc atcggacgga
    15841 agacgttcag ttcaaagtta ccggaagcgc cacccatgtt gatcgccacg tcgttcccca
    15901 ttacctgaca gcagagcatg gttaatgctt cacactgggt tgggttcact ttccccggca
    15961 tgattgagct gcccggctca ttttccggga ttgagatttc accaattccg cagcgcgggc
    16021 cagaggccag ccagcggaca tcattggcga ttttcatcag tgacgcagcc aaccctttca
    16081 acgcgccgtg cgcctgaacc agggcatcac aggtcgcaag cgcttcaaat ttgttcggcg
    16141 cggtaacaaa cggtgcacag gtaatgactg ccagttcatc tgctacgcga cgcgcatact
    16201 ccggatgggt atttagtcca gtacccaccg ctgtaccgcc aagagccagt tccgctacgt
    16261 gaggcaggct gtattcgata tgtttgagat tatgctcgag catcgctacc cagccggaaa
    16321 tctcctgccc tagtgttagc ggcgtggcgt cctgcaagtg ggttcgaccg attttgacga
    16381 tatcggcaaa tgcacgcgat ttttcactca gtgtctgcgt cagggtttta agctgcggaa
    16441 tgagttgctt gcgcagcgcc agcagcgccg caacgtgcat cgccgtcgga aagacatcgt
    16501 tggaactttg gcttttgttc acgtcgtcgt tagggtgaac tttacgttcc atcccgcgca
    16561 cgccgccgag taattcactg gcccggttag ccagcacttc gttcatgttc atgttacttt
    16621 gcgtgccgga gccggtctgc cagatagcca gcgggaattc gtcgtcatgc tgtcctgcca
    16681 gtacttcatc cgccgcctgc cgaatggcgc tcgctttctc ttcagacaac aagcctaaat
    16741 cttcattaac ttttgccgct gcgcgcttgg ttagcgccag cgcatgaatc agtgaggtgg
    16801 gcattttctc cgtcgaaatg cggaaatgct ccagcgagcg ttgagtttgt gcgccccaca
    16861 gcttatctgc cgggacatca atcgccccca tcgaatcttt ttcgctgcgt actgtattca
    16921 tggcctgctc ctcacctgtt taattttttc tttctgtttt gctttcgcta agcaactttt
    16981 agctcactta ttatttacta tttgataaca agtgtttggt ctttcgtgcc atgtaaaaaa
    17041 accgccccga agggcggctc tgtttatttc acacagcgag tgcactgtgt gagttgtatc
    17101 tgctggaaga agtcatttcc tttatcatcc acaaggataa acgccgggaa atcttccact
    17161 tcaattttcc agatggcttc cattcccagt tccggatatt caacacattc caggctctta
    17221 atacttccct gcgccaatac agcggccgga ccaccgatac tgccaaggta gaagccgccg
    17281 tgttttttac aggcatccgt cacctgctgg ctgcggttgc ctttcgccag catgatcata
    17341 cttccgccct gcgcttgcag ttgatcgaca taagaatcca tccgtccggc ggtcgttggg
    17401 ccaagagaac cggaggcata accttccggc gttttggccg gacccgcgta gtaaatcgga
    17461 tgatctttaa tgtactgcgg cagcccttca ccgttatcca tccgctcttt cagtttggcg
    17521 tgagcaatat cacgaccgac gataatcgtg ccgttaagcg ataagcgtgt agaaacggga
    17581 tactgcgaca actgtgcgag gatctctttc atcggacggt taaggtcaac gcgcaccgct
    17641 tcgccttctc ccgctttacg cagctcttca gggatatatt tacctggatt atgttccagt
    17701 ttttcgatcc agatcccctg acggttgatc ttcgctttga tattacggtc agcagagcag
    17761 gaaacaccca taccaaccgg acaggatgcg ccgtgacgtg gcaggcgaat cacgcgtatg
    17821 tcgtgagcga agtatttacc accaaactgc gcacccagac cgagattttg cgcttcgatc
    17881 agcaattctt tttccagttc cacatcgcgg aatgcctgac cgtgctcatt cccttccgtt
    17941 ggcagttcgt catagtattt agcggaagcc agtttcactg ttttaaggtt agtttctgca
    18001 gaagttccac caattacgaa cgcaatatga tacggaggac aggccgccgt acccagcgtg
    18061 cgcatcttct caaccaggta atttttcagt ttccccggcg ttagtaacgc tttggtttcc
    18121 tgatagagat acgtcttgtt tgccgaacca ccacctttgg cgatacagag gaatttgtac
    18181 tcgtcgccat caacggcata aagatcgatc tgcgctggca gattggtgcc ggtattcacc
    18241 tctttataca tatccagcgg cgcgttttgc gagtagcgca aattatcttc gatataagtg
    18301 ttatagacac cgcgcgccag cgccgcttca tcacagccac cggtccatac acgctgccct
    18361 tttttaccaa caataatcgc agtgccggta tcctgacagg ttggcagaac acctttcgcc
    18421 gcgatgtcgg agttgcgcag gaattgcagc gccacatatt tatcattttc gctggcttcc
    18481 gggtcacgca gaatgtcggc cacctgttgt tggtgagccg gacgcagcat aaatgacgca
    18541 tcatgaaacg cctgacgcgc caacagagtt aacgcttcgg gtgcgacttt caaaatctcc
    18601 tgcccttcaa attcagatac gctaacgtgt tcgctggtta gcaggtaata ctcagtatca
    18661 tcttttttga gtggaaaagg agcctgataa tgaaagggtt tgtttgacat tgttctctca
    18721 cttactgcct ggtttggtta tgctctgggc gggtgttccg ttgccctgtt aaaagcgagt
    18781 aacaatatcc tacacacttt tttaacaaaa actgagacta gtacgacttt ttgcggctcc
    18841 aggttacttc ccgtaggatt cttgctttaa tagtgggatt aatttccaca ttaaaacagg
    18901 gattgatcat gcaaaaactc attaactcag tgcaaaacta tgcctggggc agcaaaacgg
    18961 cgttgactga actttatggt atggaaaatc cgtccagcca gccgatggcc gagctgtgga
    19021 tgggcgcaca tccgaaaagc agttcacgag tgcagaatgc cgccggagat atcgtttcac
    19081 tgcgtgatgt gattgagagt gataaatcga ctctgctcgg agaggccgtt gccaaacgct
    19141 ttggcgaact gcctttcctg ttcaaagtat tatgcgcagc acagccgctc tccattcagg
    19201 ttcatccaaa caaacgcaat tctgaaatcg gttttgccaa agaaaatgcc gcaggtatcc
    19261 cgatggatgc cgccgagcgt aactataaag atcctaacca caagccggag ctggtttttg
    19321 cgctgacgcc tttccttgcg atgaacgcgt ttcgtgagtt ttccgagatt gtctccctac
    19381 tccagccagt cgcaggtgca catccggcaa ttgctcactt tttacaacag cctaatgccg
    19441 aacgtttaag cgaactgttc gccagcctgt tgaatatgca gggtgaagaa aaatcccgcg
    19501 cgctggcgat tttaaaatcg gcgctcgaca gtcagcaggg tgaaccgtgg caaacgattc
    19561 gtttaatttc tgaattttac ccggaagaca gcggcctgtt ctccccgctg ttactgaatg
    19621 tggtgaaatt gaatcctggc gaagcgatgt tcctgttcgc tgaaacaccg cacgcttacc
    19681 tgcaaggcgt ggcgctggaa gtgatggcga actccgataa cgtgctgcgt gcgggtctga
    19741 cgcctaagta cattgatatt ccggaactgg ttgccaatgt gaaattcgaa gccaaaccgg
    19801 ctaaccagtt gttgacccag ccggtgaaac aaggtgcaga actggacttc ccgattccag
    19861 tggatgattt tgccttctcg ctgcatgacc ttagtgataa agaaaccacc attagccagc
    19921 agagtgccgc cattttgttc tgcgtcgaag gcgatgcaac gttgtggaaa ggttctcagc
    19981 agttacagct taaaccgggt gaatcagcgt ttattgccgc caacgaatca ccggtgactg
    20041 tcaaaggcca cggccgttta gcgcgtgttt acaacaagct gtaagagctt actgaaaaaa
    20101 ttaacatctc ttgctaagct tattaaaggc ttataacacc ttcaggcggc cagtccgcct
    20161 gatttcattt tatggataat cattatgaat aaatcgctgg tagcggtagg cgtcattgtt
    20221 gcgctaggcg tagtctggac aggcggcgca tggtatacag gcaagaagat tgaaacccat
    20281 ctcgaagaca tggtcgcgca ggcgaacgcg caactaaaac tgacagctcc tgaatccaac
    20341 ctggaagtga gttatcaaaa ctatcatcgc ggcgtattca gcagtcagtt gcaactgttg
    20401 gtgaaaccca ttgccgggaa agaaaatccg tggattaaaa gcggtcagag cgtcatcttc
    20461 aacgaatcgg ttgatcatgg tcccttcccg cttgcccagc ttaaaaaact gaacctgatc
    20521 ccgtcgatgg catcaattca aaccacgctg gttaataacg aagtaagcaa accactgttt
    20581 gatatggcaa aaggtgaaac gccttttgag attaactcgc gcattggtta cagcggtgat
    20641 tccagttccg atatttcgct caagccactg aattacgagc aaaaggatga aaaagtcgcc
    20701 tttagcggcg gcgagttcca gttaaatgct gacagagacg gcaaagccat ctccctttcc
    20761 ggggaggcgc aaagtggtcg gatagacgca gttaacgaat acaaccagaa agtgcagttg
    20821 acctttaata atctgaaaac cgacggttcc agcacgctgg caagttttgg tgagcgcgta
    20881 ggaaaccaaa aactgtcact ggaaaaaatg accatttcag tggaaggcaa agaactggca
    20941 ctgctggaag gcatggagat cagcggtaaa tcggatctgg tcaatgacgg taaaacgatc
    21001 aatagccaac tggattactc gctaaacagc ctgaaggtac agaatcagga tctgggcagc
    21061 ggcaagctga ctttaaaagt cggccagatt gatggtgaag cctggcatca gttcagccag
    21121 caatataacg cgcaaactca ggcgctgctg gcacagccag aaattgccaa caatcccgaa
    21181 ctttatcagg agaaagtgac ggaagccttc tttagcgccc tgccgctgat gttgaaaggc
    21241 gatccggtga ttactgtcgc gccgctaagc tggaaaaaca gtcagggtga aagtgcgctg
    21301 aatctgtcgc tgttcctgaa agatccggca acgactaaag aagcgccgca aacgctggcg
    21361 caggaagtag atcgttcggt taaatctctg gatgcgaaac tgaccattcc ggtggatatg
    21421 gcaactgagt ttatgactca ggtagcgaag ctggaaggtt atcaggaaga tcaagcgaaa
    21481 aaactggcga aacagcaagt tgaaggtgca tcagcaatgg ggcagatgtt ccgtctgacc
    21541 accttgcagg acaataccat caccaccagc ctgcaatata ctaacggtca gataacgtta
    21601 aatgggcaga aaatgtcgtt agaagatttt gttggcatgt ttgcgatgcc agctcttaac
    21661 gttccggctg taccggcaat tccgcagcag taattcacgg ccaaaacgcc ggagaatttt
    21721 cacttcggcg ttttcaaacc agagattgcc tgatgcgcta cgcttatcag gcctaccttt
    21781 tcctgcaata ctttgaattt atgagttttt gtaggctgga taaggcgttt acgccgcatc
    21841 cggcataaaa aacgcgcact ttgtcaacaa tctgaaacgc cggaggtttt tctctccggc
    21901 gttatttctt acttcagcat aaagtcatac tgaatactca ttttcacatc ccagtaattc
    21961 aggcgatcgc ccagcgtact gccatcgcgc ttttcccgcc ctttatcggc agcaagaaag
    22021 aaattcatcc cttgtaacgg cccttcgctg acccgatagt tcataccacc taagataccc
    22081 gtgccttcaa tccgcacatc tcgtttactg gattcatagc cgcgagtcac aatcggtgca
    22141 aatgtcagtg taaattgcgg cgttaaacga tagttgacgc ccaattgcca ggactgcatt
    22201 ccttcacggt tacgatcaag acttaatgaa aagggatagc caatgtcggt atccaccacg
    22261 gcaccattca ttgcatggcg caaataacca ccactgccaa atacgcttcc ccacggcgca
    22321 ttccaggtca attgtccact aaccaacgcc gtttcattgg gctggctggt attacgactt
    22381 aaaccttcga gctgcgcgta aaagccgagc aactcccctt tcaacgtata attcgggtcg
    22441 agcggtatgc ttttctcgag aatactttgt atctgattgg aaacatcttt ctgtaccgat
    22501 gcccccagag aatagcgact ggtatcatca tgccaactgg cggctaaaaa agaacgtgcg
    22561 cgatgtttat cgtattttcc cgtctggctg ttatacaccc cttcatcacg aataccggtt
    22621 gttgaatcag tccataaaaa tactcgtgaa cgccacattc cccacagatc aatatttggt
    22681 gttaaagccc aataacctaa tgctccttca gaaactgtcg gtaatgtacg ttgcgaactg
    22741 ccagccatta acggaatacg ataaggtaag ctaccataac tataatccgt cccgaagcga
    22801 cctaatttaa gcaggctatt ttcacagggt tttattttta ctgcccccag ggcaaagcca
    22861 aaacttttat caccatcaag ataccaccgg gtactcatat cagcacgagc acctaattta
    22921 taaacataat atgccccgcc ttcaacgcca ataatattgg aataataacc actattgaaa
    22981 tcgaacaatc ctctctgtac ccatgcgtaa atatctcttc ccgcgccagc actgggctta
    23041 tccgccctgc gcaattcgtt tttcagtctg atgcgtagtc ccgcttcatc gtcagccagt
    23101 tgcgccgcat aagcagaggt aaggccagag gcagccgtca ggcaaataac ggccatggcc
    23161 actatttttc tcatagttgc acctttgatg ttctgattat ttttattgaa tattaattag
    23221 tgatatcgct gattaattgc tgctgcactt ttttacgatt atcaatttca accacgattt
    23281 ctttgaattt tttatccgtg agcggataaa accagataat aacgaatgcc agtagcataa
    23341 atccgcaagg tactaaggca attgatgtgc ggatgctcat aataacttcc ggcgtttgca
    23401 cctgattggc gatatatccg cttaatccca aaataaaggc aggaattgaa cctccgattg
    23461 cctgaccgca tttacgggta aatgagaata gtgaataggt gagcccttca attcgcacgc
    23521 cggtcaggta ttcaccgtat tctacggtat cagcttccag tgcccacatc acagtcatag
    23581 taacgccctg accaattgaa gcgatggcca acgcaaccaa cgccaccggc agtgaccaga
    23641 cggaaaccca gaagaatagc agataaccgc aggttcccag caaagcgcca atcaggaagg
    23701 tattcttttt accgctcctc gcgaccatcc ccggcaccag cggtgccgat gccacagtac
    23761 caaccaagtt ttgcaccagt accagcacag tgaacagccc ggtatcattt aacacatagc
    23821 gctcgtagaa caacgacgag gcgctgaccg caaaggtcga aatcagcaca cacagcgcac
    23881 cgatgcacaa cataaacagc gggcgattcc gtttcagggt ttgcagactg atcttcaatg
    23941 acggctgcgc aacgatacgt accacattct cacgcgtcga tttgaagcag atgaagtaaa
    24001 gcaccattcc ggcaatcgcc agcacaatcg tccagaaatg gtataccgac accatctctt
    24061 ccgggctgga gttcttaatg ctcggcccta tcagaaatgc caggcagaca aaggtcaatg
    24121 aagcggcaat cccacgagcc gcgcccagac gggcgcggga ttgtggttgt tgggtcatcg
    24181 cggtagcaag tgaaccataa ggaatattca ccaggctata gcaaagcccg aggcccatgt
    24241 aggtcaaata tgcatacact actttgctgc tatggctcca gtcggtcggt acccagaata
    24301 ccagcacgct gaagatcatt aacggcgcag taccgaagag taaaaacggg cggaattttc
    24361 cccagcgggt attcacactg tccaccactc gtccggcaaa gacgtcggcg aaggcatcga
    24421 atacccgcac caataacagc atggtgcccg ccgcagcggc accgacgcaa gcgacgtcgg
    24481 tgtagtaact caacaggaag agcgccccca ttgcgaaggc gaagttattg gcgacgtcac
    24541 cgaggctgta gccgacgatg gtgcgccagg agagttgttg attcattgtt tgcctccctg
    24601 ctgcggtttt tcaccgaagt tcatgccagt ccagcgtttt tgcagcagaa aagccgccga
    24661 cttcggtttg cggtcgcggg tgaagatccc cttcttgtta ccgccaacgc gcaatatgcc
    24721 ttgcgaggtc gcaaaatcgg cgaaattcca tacctgttca ccgacgccgg cactgacgcg
    24781 atcaaagacg cggtgataca tatccagcca tgcacactga tactcttcac tccacatgtc
    24841 ggtgtacatt gagtgcagcc cggctaacgt atccacgccg tattcggtga tgataatcgg
    24901 ctgatgcagt ttctcctgcc aggctagaag ttctttttcc agtaccttct ctgccgtttc
    24961 caaatcgccg ctttggacat accatccgta ataacggttc aggcacagca catcaaagag
    25021 atcgctgatg gtatcggtgt gagcgtcgca gaacattaca ttgacgcagg tgatcggacg
    25081 cgtcgggtcg agtttacgcg ttgcttccgc cagtggcgcg aaatattctc gtgcaccttg
    25141 cggacgggta tccggttcgt tggcaatact ccacatcacc acgcttgggt ggtttttgtc
    25201 acgcgctatc agctctttaa tcgcctgtaa atgcgcctgc tgagtttccc cgttgacagc
    25261 ctcttcgctg tacagttctt tcggcttgtt gcccgcttcg aaaccaatgc ctaaagagag
    25321 gttaaagccg acagctgcag tttcatcaat caccacgatg ccatgttcat ctgcccactc
    25381 gagcatctct tcagcgtaag ggtaatgcga ggttcggtag gagttggccc caatccagtc
    25441 cattaatgcg tgatcgtgca ccatcagcac gttatcgaat cctttgcctc gcaaatccgc
    25501 atcttcatga cgaccaaagc cagtaaagta gaacggtttg tggttgttcg tccttcactg
    25561 ccactgaccg gatgccgacg cgcagcgggt agatatcaca ctctgtctgg cttttggctg
    25621 tgacgcacag ttcatagaga taaccttcac ccggttgcca gaggtgggga ttcaccactt
    25681 gcaaagtccc gctggtacct tgtccagttg caaccacctg ctgatccgca tcacgcagtt
    25741 caacgctgac atcaccattt gctaccacct gccagtcaac agacgcgtgg ttacagtctt
    25801 gcgcaacatg cgtcaccacg gtgatatcgt ccacccaggt gttcggcgtg gtgtagacca
    25861 ttacgctgcg atggatcccg gcatagttaa agaaatcatg gaagtaagac tgctttttct
    25921 tgccgttttc atcggtaatc accattcccg gcgggatagt ctgccagttc agttcgttgt
    25981 tcacacaaac ggtgatacgt acacttttcc cggcaataac atacggcgtg acatcggctt
    26041 caaatggcgt atagccgccc tgatgctcca tcacttcctg attattgacc cacactttgc
    26101 cgtaatgagt gaccgcatcg aaacgcagca cgatacgctg gcccgcccaa cctttcggta
    26161 taaagacttc gcgctgatac cagacgttgc ccacataatt acgaatatct gcatcggcga
    26221 actgatcgtt aaaactgcct ggcacagcaa ttgcccggct ttcttgtaac gcgctttccc
    26281 accaacgctg atcaattcca cagttttcgc gatccagact gaatgcccac aggccgtcga
    26341 gttttttgat ttcacgggtt ggggtttcta caggacgtaa cataagggac tcctcattca
    26401 aataaaaata ctggtcaacc tttaatctga ttagttaacc aattctgtgt tgcacacagt
    26461 tatctgtgag aaacccatgg aagagaaatg gaaataaaaa gaactgacac cgcgatcaaa
    26521 aaaccaaaat ctgcaatacg cacagcgtga tatagatcgc attaatcttt aaaacagcgt
    26581 tgacagaagc cataaaataa gcaatcgaac gctcgttcga gcatcttgag aacgataaac
    26641 tctcatgaca tatggctacg gtgaatattt tgggggggaa ttctccgatc ccggctagat
    26701 tgtattttgt acagggaaat taaagtatga aacgcgggca cagttatcac cagcccgcga
    26761 aatgagagga tcaggatgcg gttaagatac cgccaatcat cgcgcgtaat ccctgagcaa
    26821 acgacgcttc acgcgccaga tcttccgctt cgatatcggc cagtacaccg taggtcagat
    26881 ccagcagtaa acgtgaagtc attgacgtgt tgatgtctgg gcttatctcg cctttttgct
    26941 gggcatcacg catccgctgg gcaacaaatt cagtgatcgt catatgctta tttttaagca
    27001 tggcggcgac ctgtgggtta cgcatccctt ccgccataat ttcgaccacc agcgcccgtt
    27061 gcccaaaggc ttcatgggtg agagagacaa tagactcgac catatagtca acaaaatgaa
    27121 tcccttcaat cggttcccgg aaacgggcca gcgccctctc ctggtcctgt aagataatcg
    27181 cctgaatcaa ggcttctttg gagatgaaat ggtgataaag cgtcccggga ctaatggcgc
    27241 aggatttaca gatggctttc atcgaggcac tgtgaaatcc attttctgaa aaaatctctc
    27301 tggcagcatt gaggatccgg gtccgtgtcg gttgtgcttc agtctgcatg ttatccatca
    27361 ttaaaccatt atagttagcg tgaataacta gtttaccgcg ttgtcaggtg agcgcctatc
    27421 attgctgttg aatagtgcga aggcacactc tattcgtatg cttttcatcc agctattggt
    27481 taaccaatag ccgtgatttg gctgccagtt gtttagcaga gacgttgatg aattgcacac
    27541 gctatcccgg taaacaacac atacggctgt ttaccggttc gttagtgtat taattgagct
    27601 cctgtacccc accaccggag acggtgagaa tttgtccgct tacccagctg gctgcaggcg
    27661 agcaaaggaa cagcgccgcg ttagcaatat cttgcggttg acccagacgt ctgatcggcg
    27721 tgtgctgtaa cattttttgt tcaatttctg gtgtaataac ggatttcagg gcatcggtta
    27781 atattgcccc cggcgcaatg ccattcaccc gaatattttt ttcacccagg tcaaatgcca
    27841 tatttctgac cagatgactg gccgcagctt tagatgatgc ataggaagtc atgtttatat
    27901 ttttattttc tgccgccata gaagtgatgg tcagaataac gccaccgcca tttttttcca
    27961 tttctggcgc aacaagttgt gacagatgga aaaaagaaaa cacattcagt tcataagcac
    28021 ggcgaaaatc cgccattggc atatcaaacg gtttaggtcc accgccaccg gcgttgttaa
    28081 ccagaatatc aactttaccc agcttactga tagcaaagtc tgccagtgca gagagttcct
    28141 gttcggaagt aatatcacaa cggcaggcaa atgcctgccc ccccagttgt tgaatttcgt
    28201 ctacaacatg gttagctgcg tcggcgttaa tatcactgac caccacagat gcgccagctg
    28261 tcgcgaatgt aatggcgatt tctttaccaa tacctgcacc cgcacctgtg atgatggcgc
    28321 attttccgtc gagtctcagg ttgtcagaat taaacacata aacctcctgt gaacttcagt
    28381 aaaaataaaa
//
LOCUS       DAJVUY010000035        28214 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.035, whole genome shotgun sequence.
ACCESSION   DAJVUY010000035 DAJVUY010000000
VERSION     DAJVUY010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28214
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.035"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..846)
                     /locus_tag="OQQ72_001396"
     CDS             complement(<1..846)
                     /locus_tag="OQQ72_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000239477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE9 sensor domain-containing protein"
                     /protein_id="HCS2011180.1"
                     /translation="MVKKPQQGTIFAAAQRSDSYFVKCINMLSLYEKIKIRLIILFLL
                     AALSFIGLFFIINYQLVSERAVKRADSRFELIQKNVGYFFKDIERSALTLKDSLYLLK
                     NTEEIQRAVILKMEMMPFLDSVGLVLDDNKYYLFSRRANDKIVVYHQEQVNGPLVDES
                     GRVIFADFNPSKRPWSVASDDSNNSWNPAYNCFDRPGKKCISFTLRINGKDHDLLAVD
                     KIHVDLNWRYLNEYLDQISANDEVLFLKQGHEIIAKNQLAREKLIIYNSEGNYNIIDS
                     VDTEYI"
     gene            complement(946..1857)
                     /gene="gsiD"
                     /locus_tag="OQQ72_001397"
     CDS             complement(946..1857)
                     /gene="gsiD"
                     /locus_tag="OQQ72_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HCS2011181.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(1860..2780)
                     /gene="gsiC"
                     /locus_tag="OQQ72_001398"
     CDS             complement(1860..2780)
                     /gene="gsiC"
                     /locus_tag="OQQ72_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HCS2011182.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(2798..4336)
                     /gene="gsiB"
                     /locus_tag="OQQ72_001399"
     CDS             complement(2798..4336)
                     /gene="gsiB"
                     /locus_tag="OQQ72_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HCS2011183.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILVH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(4356..6227)
                     /gene="gsiA"
                     /locus_tag="OQQ72_001400"
     CDS             complement(4356..6227)
                     /gene="gsiA"
                     /locus_tag="OQQ72_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HCS2011184.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLCVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(6214..7179)
                     /gene="iaaA"
                     /locus_tag="OQQ72_001401"
     CDS             complement(6214..7179)
                     /gene="iaaA"
                     /locus_tag="OQQ72_001401"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS2011185.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPAIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            7383..8618
                     /gene="moeA"
                     /locus_tag="OQQ72_001402"
     CDS             7383..8618
                     /gene="moeA"
                     /locus_tag="OQQ72_001402"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HCS2011186.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            8618..9367
                     /gene="moeB"
                     /locus_tag="OQQ72_001403"
     CDS             8618..9367
                     /gene="moeB"
                     /locus_tag="OQQ72_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HCS2011187.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHNDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEYDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(9443..10105)
                     /gene="fsa"
                     /locus_tag="OQQ72_001404"
     CDS             complement(9443..10105)
                     /gene="fsa"
                     /locus_tag="OQQ72_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS2011188.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKNPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            10236..11135
                     /locus_tag="OQQ72_001405"
     CDS             10236..11135
                     /locus_tag="OQQ72_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HCS2011189.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYITPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLSYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            11141..13573
                     /locus_tag="OQQ72_001406"
     CDS             11141..13573
                     /locus_tag="OQQ72_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HCS2011190.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            13719..14534
                     /gene="ybiV"
                     /locus_tag="OQQ72_001407"
     CDS             13719..14534
                     /gene="ybiV"
                     /locus_tag="OQQ72_001407"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HCS2011191.1"
                     /translation="MSVKVIVTDMDGTFLNDAKMYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            14686..15951
                     /locus_tag="OQQ72_001408"
     CDS             14686..15951
                     /locus_tag="OQQ72_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HCS2011192.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSTSRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP
                     HEDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(16192..17784)
                     /locus_tag="OQQ72_001409"
     CDS             complement(16192..17784)
                     /locus_tag="OQQ72_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCS2011193.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18003..18923
                     /gene="ldtB"
                     /locus_tag="OQQ72_001410"
     CDS             18003..18923
                     /gene="ldtB"
                     /locus_tag="OQQ72_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS2011194.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(18982..20100)
                     /locus_tag="OQQ72_001411"
     CDS             complement(18982..20100)
                     /locus_tag="OQQ72_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCS2011195.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(20097..20564)
                     /gene="mntR"
                     /locus_tag="OQQ72_001412"
     CDS             complement(20097..20564)
                     /gene="mntR"
                     /locus_tag="OQQ72_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HCS2011196.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGTK"
     gene            20750..20878
                     /gene="mntS"
                     /locus_tag="OQQ72_001413"
     CDS             20750..20878
                     /gene="mntS"
                     /locus_tag="OQQ72_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HCS2011197.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            21150..22733
                     /gene="opgE"
                     /locus_tag="OQQ72_001414"
     CDS             21150..22733
                     /gene="opgE"
                     /locus_tag="OQQ72_001414"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS2011198.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLIGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(22782..23297)
                     /gene="ompX"
                     /locus_tag="OQQ72_001415"
     CDS             complement(22782..23297)
                     /gene="ompX"
                     /locus_tag="OQQ72_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HCS2011199.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(23350..23415)
                     /locus_tag="OQQ72_001416"
     CDS             complement(23350..23415)
                     /locus_tag="OQQ72_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011200.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            23650..24537
                     /gene="rhtA"
                     /locus_tag="OQQ72_001417"
     CDS             23650..24537
                     /gene="rhtA"
                     /locus_tag="OQQ72_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HCS2011201.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            24836..25339
                     /gene="dps"
                     /locus_tag="OQQ72_001418"
                     /gene_synonym="pexB"
     CDS             24836..25339
                     /gene="dps"
                     /locus_tag="OQQ72_001418"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HCS2011202.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            25743..26489
                     /gene="glnH"
                     /locus_tag="OQQ72_001419"
     CDS             25743..26489
                     /gene="glnH"
                     /locus_tag="OQQ72_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HCS2011203.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            26628..27287
                     /gene="glnP"
                     /locus_tag="OQQ72_001420"
     CDS             26628..27287
                     /gene="glnP"
                     /locus_tag="OQQ72_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HCS2011204.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            27284..28006
                     /gene="glnQ"
                     /locus_tag="OQQ72_001421"
     CDS             27284..28006
                     /gene="glnQ"
                     /locus_tag="OQQ72_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HCS2011205.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         6977 a         7537 c         6971 g         6729 t
ORIGIN      
        1 aatatactcc gtatcgacag aatcaataat attataatta ccttcgctat tataaataat
       61 cagtttttca cgagcgagtt gattcttggc aatgatctca tgaccttgtt tcaaaaatag
      121 aacttcatca ttagcgctga tttgatcaag atactcgttc aaataccgcc agtttaaatc
      181 gacatgaatt ttatctaccg ctaacaaatc gtgatctttg ccgttgatac gtagcgtaaa
      241 agagatacat tttttacccg gacgatcaaa gcaattgtat gccggattcc agctgttgtt
      301 agagtcatct gaagccaccg accacggtcg tttcgatggg ttaaaatcgg caaaaataac
      361 ccgccctgac tcgtcgacaa gcggtccatt tacttgttcc tgatgataaa caacgatttt
      421 atcattcgcc ctccgtgaaa agagataata tttattatca tcaagtacca gtcccaccga
      481 gtctaaaaat ggcatcattt ccattttcag aatcacggcg cgttgaatct cctctgtatt
      541 ttttaataaa tacagtgagt cctttaatgt cagggccgaa cgttcaatat ctttaaagaa
      601 atagccaacg tttttctgaa taagttcaaa gcggctatcg gcacgtttta ccgcgcgttc
      661 cgataccagt tgatagttaa tgatgaaaaa aagaccaata aatgacagtg ctgccaataa
      721 aaataaaatt atcagcctta tctttatctt ttcgtataaa ctcagcatgt taatacattt
      781 aacaaaataa ctatctgaac gctgtgccgc tgcaaaaata gtcccttgct gcggcttttt
      841 aaccaaatta cccgattcta caaaatcagc agaaagttac aacacttgct tagggcaata
      901 atttcctgtg aggtgattac cctttcaagc aatattcaaa cgtaactatc ctttaatttt
      961 cggatccagc gcatcgcgta aaccatcgcc caacaaattg aacgccagta cggtcagaaa
     1021 aatagccagg gccggaaaaa cagcgacatg cggcgcgata accatatccg ctcgtgcctc
     1081 attgagcatt gctccccact ctggtgtcgg cggctgcgca ccgaggccga gaaatgacag
     1141 gctggcggca gagataatcg aggtgccaat gcgcatggtg aaaaacacca cgatagacga
     1201 gacggtccca ggcaagatat gacgcaataa aatggtcata tcgctggcac caatactgcg
     1261 tgctgactca ataaaggttt gctgtttcaa caccagcgtg ttgccgcgca ccagtcgggc
     1321 aaacgcgggg atggaaaaaa tggcgactgc gataatcacg ttagcaatgc cgcttcccaa
     1381 caccgcaaca acagcgatcg ccagtaaaat acccgggaag gcaaacagca catcgcaaat
     1441 gcgcatgatc agccgatccc accagccttc ataatatcca gccaacaagc ccagcaacgt
     1501 cccgatcgcc gcaccgataa acacggcaaa cacgcccgcc gccagcgaga tttgcgcacc
     1561 aaccaggaca cggctgaaaa tgtcgcgccc cagtgaatcg acgccaaacc agtgctgcaa
     1621 agaaggtccg ttattcagat tgtcataatc aaaataattt tcggcgtcat agggagcgat
     1681 ccagcgtgca aaaatggcca ccacaatcaa taaaataacg aataatgcgg cggtcatcgc
     1741 catatgctga cggcgaaatc gtcgccagaa ttcatgccac ggtgtacgca cctggtcagg
     1801 tttgaccagt ggcatggcgt ttaacaccgc ctgacgtcgc cagttaaata gtcgcatcct
     1861 tacttgtacc tgatagccgg gttaatggcg gcgtaaagca catccaccac taagttgata
     1921 agaataaatt ccagcgagaa aagcagaatt tccgcctgaa tcaccgggta atcgcgcatt
     1981 tctacggagt caacgagtaa gcgtccaagt ccgggccagt tgaaaacttt ctccaccacg
     2041 atagaaccac cgagcaaaaa gccaaactgt aagcccatca tggtcactac cgggatcatc
     2101 gcgttacgta gcccgtgttt gaggacaacc caggtttcgc tcaccccttt cgccctcgcg
     2161 gtacgcatat aatcttcgct taaaacatcg acaaacgacg cgcgggtaaa gcgcgccatc
     2221 acggctgcca ctgccgcgcc gagcgtcagg gaggataaaa tgtagtgctg ccaactgtct
     2281 gctcccacgg taggcagcca gcccagttca acggagaata cctgaattaa aagcatcccc
     2341 agcgcaaatg ccggaaacga gatccccgac accgcaatgg tcatactcaa tcgatccggc
     2401 caacgattac gccagacggc ggcgataatt cccgccgcca taccaaatat caccgcccag
     2461 accatactgg ttatggtcag ccacagcgtt ggcataaagc ggctggcaat ctcatcggca
     2521 accggacgac gcgacaccat cgacaggcca aaatccccct gcacagcatt gctgatatag
     2581 tgccagaact ggtgatacag cggctgatcc aaccccagct gctgacgcac cagttctata
     2641 acctgcgcat cagcttcggg cccggcaatc aatcgcgccg gatcgccggg cagcatatgc
     2701 acaaataaaa acaccagcac cgagacgata aacagcgtcg gaatcaaccc cagtaagcgt
     2761 ttgataacgt aattaagcat tccactccct gcgttgctta ttgcaaatcc gcgtcttcaa
     2821 agctgaagcc ggtgtctggc atgatccaaa aaccggtcag gtttttactg tgtgccgaca
     2881 ccagtttttc taccaccagc gggatccacg gcgactcttg ccagatgata tcctgcgccg
     2941 ccttatacaa gcgggtcttt tccgccggat cattagtttt cagtgcctga gccaggaagt
     3001 cgtccacctg tttattgctg taaaatgcgg tattaaacag cgtcggtggc cagttttgcg
     3061 aggcgaacag tggcgatagc gcccagtccg cttcgccggt tgaagccgac cagccagtgt
     3121 agaacatccg cacgccgctc tctttttgcc ctttaccttc aacttctgcc gcccgctgtc
     3181 cggcatccat cgcggtcacc tgggctttaa tcccgacctg cgctaactgc tgctgggtaa
     3241 attgcagcac tttctgcgcg gtgctgtggt tatgtgacga ccacagcgtg gtactgaaac
     3301 cgttgggata tcccgcctct ttcagtaatt cgcgcgcttt cactggatcg taaggccacg
     3361 gtttataact ttgcgcgtag gcgatacttg gcggtaccac accagtagct ggcgttgcat
     3421 agcccgcaaa ggcaactttc accagcgccg gacggttaat ggcgtaattc agcgcctcac
     3481 ggaccttcgg gttatcgaac ggcttttgcg tcacgttcat actgatataa cgctgcataa
     3541 ttgacggact ggccatcaac tcgatatttt tgtttttctc cagcagtgcg gcctgctcgt
     3601 agggaatggg gaaagcaaac tgcgcttcac cggtttgcag cattgccgcg cgggtgttgt
     3661 tatccgccac cggacgccag gttatgctgt ccagtttggg caatcctggc tgccagtaac
     3721 ccgcgaattt tttcaccttc acaaaatcgg tctgattcca ggtatccagt tcatacggtc
     3781 cggttcccac cggatgaaaa ccaatctcct tgccatattt ttccagcgct gccggtgaaa
     3841 tcatcgcggt cgccggatgg acaagaatat taataaacgc tgagaacggc tgtttgaggg
     3901 taatctttac cgttgtcgga tcgatcgcct ccgttttggc aatattctta tacaggttat
     3961 agcgtttaag atgattcgcc ggatcgctgg cccggtccag attcgctttc accgccgcgg
     4021 cgttgaaatc ggtgccatcc tggaatttaa ttccttcccg caatttcacg gtgtaagtaa
     4081 tgccgtcatc ggaaacggta taactctccg ccagcacgtt tttcagtttc atctctttat
     4141 ccagaccgaa cagcccctgg taaaacgatt tcgctacggc ctgagataac gtgtcattcg
     4201 cgtcatacgg atcgagcgtg gtgaaattcg atcctaccgc caccaccaca tctttggcag
     4261 cgaatgcaca agatgccatc aacgctgtcg caatgcccag cgccactaac ccactacggt
     4321 gtacagctct tgccatttta ttctccgcct gaatgttatc tacgcatgaa tgcgtattct
     4381 gattgtggtt gtgcgacgta atgccccggc ccgacgcatt gcaacgagac ggctgccacc
     4441 tcttcgccac gcagatgaat attgctggga agatcgtccg acagcagtac acgctgcggt
     4501 cgttgtcggg acggttcagc gaccggaact gccgccagta atttacgcgt ataaggatgc
     4561 tgcgggtttt cgaagaccgc gcgccgtgga ccaatttcaa caatttgccc gagatacatc
     4621 accgccacac gatgactaat ccgctctacc acggccatat cgtgggagat aaacagatac
     4681 gcaatgccga aatcacgctg gagatcgagc aacaagttga taatctgccc gcgaatagaa
     4741 acatccagcg ccgaaacggc ttcgtcggca atgatcactt ttggattcaa tgccaacgcg
     4801 cgagcaatgc agatgcgctg gcgctgaccg ccggaaaact catgcgggta acgccaggca
     4861 tgttcaggta acaggcccac gcgctccagc aaccacgcaa cgcgtgcagc cgcgtcttta
     4921 cctggcaata aaccgtgtac acacagcggt tcgataatcg aatcaccgat ggtctgacgt
     4981 gggtccagcg aagcgtaagg gtcctgaaaa ataaactgaa tatcccggcg caatgcctga
     5041 agtttgccag gtgacaaggt atcgattcgc tgaccgttaa agataatttc gccgccctgc
     5101 gattcgacca ggcgcagcaa cgcccgcccg gtagtggatt taccgctgcc agactcgccc
     5161 accagcgata gcgtttcgcc aggccagaga tcaaaactga ctttctcaac ggcatgcact
     5221 tcccgcgtta cgcgattcaa caaaccgctg cgcaaaggga aacgggtgac aagattacgc
     5281 actcgtaaaa caggttcgcc atccaccacc gttttctgct cgatgggggg ttcctgtttc
     5341 gctggatgtt caagcgatat caatgggaaa cgtcggggat aatctaaccc tttcatcgca
     5401 ccaagttgcg gaacagcagc taacagcgca cgggtgtaag gatgttgcgg tgcatgaaaa
     5461 atctgttcga cggtacccgt ttccaccgcc tcgccctgat acatcaccag tacccgatcg
     5521 gctatctctg ccaccacgcc catatcgtgc gtgataaaga taacgcccat cgacatctct
     5581 ttttgcaata ctttgattaa ttgcaggatc tgcgcctgaa tagtgacatc cagcgcggtg
     5641 gttggctcat cggcaatcag caccgccggg cggcatgaca gcgccatcgc aatcatcact
     5701 cgctggcgca tcccgccaga gagttgatgc ggataacgtg aaagaatggt ttgtgcctca
     5761 ggaatgcgta cctgatccag catccgcttc gcctcgacca tcgcttcttc acgactggcg
     5821 ttctgatgca gacgaattga ttcggcaatc tgttcaccca cagtaaatac cgggttcagc
     5881 gatgtcatcg gctcctgaaa tatcatcgcc atatccgcac cgcgaacatg gcgcatttgt
     5941 gcagcgctct gctcgctaag ttcaatcact tcgcgactgc gccgctgcaa cagcatttta
     6001 tcgcactgta ctaaaccgcc cgcctgttcc aacaggcgca tcaatgccaa cgcagtcact
     6061 gacttaccgg agccggattc gccaacaatt gccagcgtct caccgcgttg cagactaaaa
     6121 gagagattgc ggaccgcagc tattttctgc tggtcctgca taaaggcaat attcagattt
     6181 tcaaccgcca gcacattacc ggcatcaagt tcatcactgt gtggcaacgg tgtccccttt
     6241 ttcacggtag ataccggtgg ttggcgtatc gcctgcgtag ccccaggcgc gatacattcc
     6301 ttcggtgtta aacggtagcg cgacattccc ttcatggccg atagcgatta agccaccgct
     6361 accgccaagc gcagggagtt tttccattac tacccgctcg caggcttccg cgagacttaa
     6421 tccgccgtaa tccattaacg cggcgatgtc atatgccgcc agcgcgcgga tgaagacttc
     6481 gcccgtgccg gtacaagaaa ccgccacact ggcgttattg gcgtagcatc cggcacccac
     6541 taagggacta tcgccaactc gtccgggtaa tttattggtc attccgcctg tggacgtggc
     6601 tgccgccaaa ttgccgtcta aatccaacgc cacggccccc acggtgccca ttttctgttt
     6661 ttcatccagt ggcgcaccgc tatggtcgag gacggttgcc ccttccttgc gcgctgccag
     6721 tagttgttca taacgcaaag gcgtggagaa aatcgccggc gagacgcgct ccatgccacg
     6781 agcaaacgca aaattttctg ccccttcgcc aatcatcatc acatgcgggc tttgctccat
     6841 caccagccgg gcggcaagaa ccggattacg cagatgacta acgcccgcca ccgcaccggc
     6901 tttcagggtg ttaccatcca tcacacaggc gtccagttca tgggtttcat cacgcgtaaa
     6961 gacagcgcca attccggcgt taaacagtgg acactcttcc agcagacgca ccgcttccgt
     7021 caccacatcc agcgcacttt cgcccgcttc cagcattttc tgcccggttt caacaatggc
     7081 agacaacgcc tcaatgtagc gtaattcctg ttgcagactc atctgcgcgc ggctaattgc
     7141 acctgcgcca ccatgaattg caatgactgc tttgcccata gtattcgtcc attaagggtg
     7201 gctcgccact tttgctataa atatcagaat ttttatgaat tactcattca atttttgaat
     7261 atagaaagat ggatatggca tgtaaaggca ggagccaacg ctacgcccga ggtggcatac
     7321 agtctgtggc gtttttctga cataataggc aaattcgatt ttgcctccgc aggagtgttt
     7381 tcatggaatt taccaccgga ttgatgtcgc tcgacaccgc gcttaatgag atgctttctc
     7441 gcgtcacccc actgaccgcc caggaaacgc tgccactggt acagtgtttt ggtcgtattc
     7501 tggcgagcga tgtcgtttcg ccgcttgatg ttccggggtt tgataactcc gcaatggacg
     7561 gctacgcggt gcgtttagcc gatattgcct ccgggcaacc gctgcccgtt gccggtaaat
     7621 cctttgccgg tcagccgtat catggtgaat ggcctgcggg cacctgcatt cgtattatga
     7681 ccggtgcgcc ggtgccggaa ggctgcgaag cggtggtgat gcaggagcag actgaacaaa
     7741 cggacaatgg cgtgcgtttt actgctgaag tgcgtagcgg gcaaaatatt cgccgtcgcg
     7801 gtgaagatat ctctgcaggt gcggttgttt tcccggcggg aactcgcctg actaccgcag
     7861 agctgccagt aattgcttca ctggggattg ccgaagttcc ggtgattcgt aaagtgcgtg
     7921 tagcgctttt ttctaccggt gatgaactcc agttgcccgg tcagccgctg ggtgacggcc
     7981 aaatctacga caccaaccgt ctcgccgtac acctgatgtt agaacagctg ggttgcgagg
     8041 taatcaactt agggattatc cgcgacgatc cccatgccct gcgcgccgca tttattgaag
     8101 ccgacagcca ggcggatgta gtgatcagtt ccggcggtgt ttcagtgggt gaagcggatt
     8161 acaccaaaac gattcttgaa gagctggggg agatcgcctt ctggaagctg gcgattaaac
     8221 caggtaaacc gttcgcgttc ggtaaactca gcaatagctg gttctgcggc ctgccgggca
     8281 acccggtttc agcgacgctg accttctatc aactggtaca gcctttgctg gcaaaactaa
     8341 gcggcaacac cgccagcggc ctgcccgcgc gccagcgcgt acgcacagcg tcccgcctga
     8401 aaaaaacgcc aggacgtctt gatttccagc gcggcgtgct gcaacgcaac gccgacggtg
     8461 aacttgaagt gacgaccacc ggacatcagg gttcacatat atttagctcc tttagtctcg
     8521 gcaactgctt tatcgtgctg gaacgcgatc gcggcaatgt ggacgtgggc gaatgggtgg
     8581 aagtagaacc gtttaacgcg ttgttcggag gcctgtaatg gcggaactca gcgatcagga
     8641 gatgctgcgc tacaaccggc aaatcattct gcgcggtttt gattttgacg gtcaggaggc
     8701 gctaaaagat tctcgtgtgc tgatcgtcgg cctcggtgga ctcggctgcg cagcttcgca
     8761 gtatctggca agcgccggtg tcggcaacct gacgctgctc gacttcgaca cggtttcgct
     8821 ctcgaatctg caacgccaga cactgcacaa tgatgccacg gtcgggcaac cgaaggtgga
     8881 atccgcccgt gacgccctga cgcggatcaa cccacatatc gcgattacgc cagtcaatgc
     8941 actgctagat gacgcagaac ttgcagcatt gattgctgaa tacgatctgg tgctcgactg
     9001 tacggataac gttgcggtac gtaatcaact gaacgcaggc tgttttgccg cgaaggtgcc
     9061 gctggtttcc ggcgcggcaa ttcgtatgga agggcaaatc acggtcttca cttatcagga
     9121 cggcgaaccg tgctatcgct gccttagccg tttgtttggc gagaacgcgt taacctgcgt
     9181 agaagcaggc gtgatggcac cgttgatcgg cgtaattggt tcgttgcagg caatggaagc
     9241 gatcaaactg ctggcaggtt atggcaaacc ggccagcggg aaaatcgtca tgtacgatgc
     9301 gatgacctgt cagtttcgcg aaatgaaact gatgcgtaat ccggggtgtg aggtgtgcgg
     9361 gcagtaattg ccacctccag gccagataag acgcggcact ccgccacgtc atcagcaatt
     9421 tatgaggatg cagaacgtcc ggttaaatcg acgttctgcc aaacgctccc agccagtcct
     9481 gttcaaactt cgccacagcg gcatcaaccg ccggatagct aatcatctgt tgtgccacat
     9541 ccagtggcag cgtaattgat tcacatcctg ccagtaagca gtccagcgcc tgacgcgggt
     9601 ttttgaaact cgctgccagc actttcgcct gcggcgcatg cattttcaat aactggtgta
     9661 agtcggtcac agtctgaatg ccgctaccgc cctgagcatc aatacgatta acgtaaggcg
     9721 caacatattc cgcacctgcc agcgccgaca gcagcccttg tgctgcgcca tataccgcgg
     9781 ttcccagcgt tggaatccct tccgctttta acatcttaat agctgccagc ccctcggcgg
     9841 tcaccggaac tttcaccacg atatccgcaa taatagaacg caatttacgt gcgtcattca
     9901 ccatcccttc agcagtggta gccattacct gggcaaacag acgcccctga ccgcccatcg
     9961 cttcatgaag ttgcggaagc acaacatcca gcggtttttt acccgcggcg ataatgcttg
    10021 ggttagtggt cacacccgcc agcggaaaaa tacgtgacag cgccttcact gcaacaacgt
    10081 ctgaagtatc cagatacagt tccataacca tcctcaaaat gtactttttg tctgaatgta
    10141 gactatcacg ggaaaactct ctgaacagtt gacgcacatc aatccaactt tcattcgaaa
    10201 gtattttaat gtttgaacga aacagagagg caactatgat tttcaatatt cagcgctact
    10261 cgacccatga tggccccggt atccgcacgg tcgtatttct taaaggctgt tcgctgggct
    10321 gccgctggtg tcagaacccg gaaagccgcg cccgcacgca ggatctgctg tatgacgcac
    10381 gactgtgtct ggaaggctgc gagctgtgcg ctaaggcagc gccggaagtg attgagcgcg
    10441 cattgaatgg tttgcttatt catcgggaaa agttaacccc ggagcatctg acggcgctaa
    10501 ccgactgctg cccgacacag gcgttaaccg tgtgtgggga agtgaaaagc gttgaggaga
    10561 tcatggcgac cgttctgcgc gataaaccgt tttacgatcg cagcggcggc ggcttaacgc
    10621 tttcgggtgg tgaacccttt atgcagccgg aaatagcgac ggcgctactg caagcctgcc
    10681 acgaggcagg cattcatact gcggtagaaa cctgtctgca tgtgccgtgg aaatatatca
    10741 ccccttctct gccctatatc gatctgtttc ttgccgattt aaaacacatt gccgacgcgc
    10801 cgtttaaaca gtggaccgac ggtaacgccg ccaaggtgct ggataacctg aaaaaactcg
    10861 ccgcagcggg caaaaaaatc attatccgcg tgccgctgat tcagggcttt aatgccgacg
    10921 aaacctctgt aaaagccatt accgattttg ccgccgacga gctgcacgtt ggcgaaattc
    10981 attttctgcc ctaccacacg ctgggcatca acaaatatca cttacttaat ctgtcctatg
    11041 acgccccgga aaaaccgctt gatgcgccag acctgctcga ctttgcccag cagtatgcct
    11101 gccagaaagg gttaaccgcg accttacgag gataacaacc atgaccacac tgaaactgga
    11161 cacgctcagc gaccgcatta aagcgcacaa aaatgcgctg gtgcatattg tgaaaccgcc
    11221 ggtctgtacc gagcgcgcgc agcactatac cgagatgtat caacaacatc tcgataagcc
    11281 gatcccggta cgtcgcgcgc tggctctggc gcatcacctg gcgaatcgca ccatctggat
    11341 caagcacgat gagttgatca tcggcaacca ggcaagcgag gttcgcgctg cgccgatctt
    11401 cccggaatat accgtctcgt ggatcgaaaa agagattgat gatctggcag atcgtcccgg
    11461 tgctggtttt gcggtgagcg aagagaacaa acgcgttctg catgaagtgt gcccgtggtg
    11521 gcgcggtcag acggtacagg atcgctgcta cggcatgttt accgatgagc aaaaaggtct
    11581 gctggcgacc ggaatcatta aagcggaagg caatatgacc tccggcgatg cgcacctggc
    11641 ggtgaatttc ccgctgctgc tggaaaaagg tcttgatggt ctgcgcgaga aagtagcgga
    11701 acgtcgctcg cgcatcaatc tgacggtact ggaagatttg cacggcgaac agttcctgaa
    11761 agcgattgat atcgtgctgg tggcagtcag cgaacacatt gaacgttttg cagccctggc
    11821 gcgtgaaatg gccgcgaccg aaacccgcga aagccgtcgc gatgaactgc tggcgatagc
    11881 agaaaactgc gatcttatcg cccaccagcc gccgcagact ttctggcagg cgctgcaact
    11941 gtgttacttc atccagttga tattgcagat cgaatctaac ggtcactcgg tatcgtttgg
    12001 tcgtatggac cagtatctct acccgtacta tcgccgagac gttgaactca accagacact
    12061 ggatcgcgaa cacgccatcg aattgctgca tagctgctgg ctgaaactgc tggaagtgaa
    12121 caagatccgc tccggctcac actcaaaagc ctctgcggga agtcctctgt atcagaacgt
    12181 caccattggc ggacaaactc tggttgatgg tcaaccaatg gacgcggtga atccactctc
    12241 ttacgcgatc ctcgaatcct gcggtcgcct gcgttccact cagcctaacc tcagcgtgcg
    12301 ttaccatgca ggaatgagta atgatttcct cgacgcctgc gtacaggtga tccgttgcgg
    12361 cttcgggatg ccggcgttca acaacgacga aatcgtgatc ccggaattta ttaaactcgg
    12421 tattgaaccg caggacgctt acgactacgc agcgattggt tgtatcgaaa ccgccgtcgg
    12481 tggcaaatgg ggctatcgct gtaccggcat gagctttatc aacttcgccc gcgtgatgct
    12541 ggcggcgctg gaaggcgggc gtgatgccac aagcggcaac gtgttcctgc cacaagaaaa
    12601 agcgttgtcg gcaggcaact ttaacaattt cgatgaagta atggacgcgt gggatacgca
    12661 aatccgttat tacacgcgta aatcaatcga aatcgaatat gtcgtcgaca ccatgctgga
    12721 agagaacgtg cacgatattc tctgctcggc gctggtggat gactgtattg agcgagcgaa
    12781 aagtatcaag caaggcggcg cgaaatatga ctgggtttct ggcctgcagg ttggcattgc
    12841 caacctcggc aacagcctgg cggcagtgaa gaaactggta tttgaacagg gcgcgattgg
    12901 tcagcaacag ctggctgccg cactggcgga tgacttcgat ggcctgactc atgagcaact
    12961 gcgtcagcgg ctgattaacg gtgcgccgaa gtacggcaac gacgatgata ctgtcgatac
    13021 gctgctggct cgcgcttatc agacctatat cgacgaactg aaacagtacc ataatccgcg
    13081 ctacggtcgt ggtccggttg gcggcaacta ttacgcgggt acgtcatcta tctccgctaa
    13141 cgtaccgttt ggtgcgcaaa ctatggcaac gccggacggg cgtaaagccc acaccccgct
    13201 ggcagaaggc gccagtccgg cctctggtac tgaccatctc ggccctactg cggtcattgg
    13261 ctcggtgggt aaactgccta cggcagcgat tctcggcggc gtgttgctca accagaaact
    13321 gaatccggca acgctggaga acgaatctga caagcagaag ctgatgatcc tgctgcgcac
    13381 cttcttcgag gtgcataaag gctggcatat tcagtacaac atcgtttccc gcgaaacgct
    13441 gctggaggcg aaaaaacatc cggatcagta ccgcgatctg gtagtgcgtg tcgcgggtta
    13501 ttccgccttc ttcaccgcgc tctctccaga cgctcaggac gatatcatcg ctcgtactga
    13561 acatatgctg taatctcttc ggcccggctg cggcgtcgcc gggctaaatc attcacatca
    13621 tcaatttcat ccttactttc attcgaaata taatttgtgc tctgcgtcac attgttatta
    13681 cactgttacg gtttcatttt cgagccagga gcacacctat gagcgtaaaa gttatcgtca
    13741 cagacatgga cggtactttt cttaacgacg ccaaaatgta caaccaacca cgttttatgg
    13801 cgcaatatca ggaactgaaa aagcgcggca ttgagttcgt tgtcgccagc ggtaatcagt
    13861 attaccagct tatttcgttc tttcctgagc taaaggatga gatctctttt gtcgcggaaa
    13921 acggcgcact ggtttacgaa catggcaagc aactgttcca cggcgaactg acccgacatg
    13981 aatcgcggat tgttattggc gagttgctaa aagataagca actcaatttt gtcgcctgcg
    14041 gtctgcaaag tgcatatgtc agcgaaaatg cccccgaagc atttgtcgca ctgatggcaa
    14101 aacactacca tcgcctgaaa gctgtaaaag attatcagga gattgacgac gtactgttca
    14161 agttttcgct caacctgcca gatgaacaaa tcccgttagt gatcgacaaa ctgcacatag
    14221 cgttcgatgg cattatgaaa cccgtcacca gtggttttgg ctttatcgac ctgattattc
    14281 ccggtctaca taaagcaaac ggtatttcgc ggttactgaa acgctgggat ctgtcaccgc
    14341 aaaatgtggt agcgattggc gacagcggta acgatgcgga gatgctgaaa atggcgcgtt
    14401 attcctttgc gatgggcaat gctgcggaaa acattaaaca aatcgcccgt tacgctaccg
    14461 atgataataa tcatgaaggc gcgctgaatg tgattcaggc ggtgctggat aacacatccc
    14521 cttttaacag ctgacctctc taccggagcc gtgcgctccg gttttccctt ctttttacat
    14581 cctgtacatc acatcaaatc attaagcttg cattaactta tttataactt atattgtcac
    14641 atgcaaatca taatggtttc gaatgaaagt taatgagagg tggttatggc ttctactttt
    14701 accagcgaca cattgccagc cgatcacaaa gcagctatcc gtcagatgaa gcacgcgctg
    14761 cgggcgcagc ttggcgacgt ccagcagatc tttaatcagc taagcgatga cattgccacg
    14821 cgagtggctg aaatcaacgc actcaaagca cagggcgatg ccgtctggcc ggtgctgtct
    14881 tatgccgata tcaaagcagg tcatgttact gcagagcagc gcgaacagat taaacgtcgc
    14941 ggttgtgcgg tgataaaagg ccatttcccc cgcgaacaag cgctaggctg ggatcagtcg
    15001 atgctggact atctggaccg caaccgcttt gacgaggtct acaaaggccc cggcgataat
    15061 ttcttcggga cgctcagcac ttcacgtccc gagatttacc ccatctactg gtcgcagacg
    15121 caaatgcagg cccgccagag tgaagaaatg gcgaatgcgc agtcgtttct caatcgtctg
    15181 tggacatttg aaagtgatgg aaagcaatgg tttaacccgg atgtgagcgt catctaccct
    15241 gaccgtatcc gccgccgtcc gcccggaacg acctccaaag gtcttggagc gcataccgac
    15301 tccggggcgc tggaacgctg gctgcttcca gcgtatcagc gcgttttcgc caacgtcttt
    15361 aatggcaatc tggcgcaata tgatccctgg catgcggcac atcgtacgga agttgaagag
    15421 tacacggtgg acaacaccac caaatgttcc gtgtttcgga cattccaggg ctggacagcg
    15481 ctctctgata tgctgcctgg tcaggggttg ctgcacgttg tgcccattcc tgaagccatg
    15541 gcgtacgtac tgttacgtcc gctgcttgat gatgtgccgg aggatgaact gtgcggcgta
    15601 gcgcccggaa gagtgttgcc ggtatcagag caatggcatc cactgttaat tgaggcgtta
    15661 accagcattc caaaactcga ggccggagac tccgtctggt ggcactgcga cgtcatccat
    15721 tccgttgccc ccgttgaaaa tcaacagggt tggggcaacg tgatgtacat tcctgcggca
    15781 ccgatgtgcg agaaaaatct tgcctacgcg cacaaggtga aggccgcact ggaaaaaggc
    15841 gcatcgccgg gcgacttccc gcacgaggac tatgaaacaa actgggaagg acgctttacg
    15901 cttgccgacc tcaacattca cggtaagcga gcgttgggca tggatgtttg agagttaatg
    15961 gaagtgaatt gatgtgggat taagaaaatc gattcgacgt tactcagatt gctgacaagt
    16021 gcgctttctt aatgcctgat gcggcgttaa cgccttatct ggcctacaaa gtcctgcaga
    16081 ttcaatatat tacaggtact gcgtaggcct gataagcgta gcgcatcagg ctattttgca
    16141 tttgtcatca gccgccgtca ccccgacagt atcggggtga cggataatca cttactcgat
    16201 ccctttacta cgcaggtaat cttcgtaatt accgctaaag tcgatcacgc gttccggggt
    16261 gatttccaga atgcgggtcg ccagggagct tacgaactca cggtcgtgtg aaacaaagat
    16321 cagcgtgccc tgatacagtt ccagcgccat gttcagtgac tcgatggatt ccatatccag
    16381 gtggttggtc ggttcgtcca tgatcagaat gttcggcttc tgcatcatta acttaccaaa
    16441 cagcatccgc cctttttccc caccggaaag cactttagct ggctttttga tgtcgtcctg
    16501 gctgaacagc aaacgaccga gaatgctgcg taccgcctgc tcgtcatcgc cttcctgctt
    16561 ccactgactc atccattcga acacggtcag atcattttca aactcatatt cgtggtcctg
    16621 ggcgtagtaa ccaatgcgcg cgttttcaga ccattttacg gtgccgctgt ccggttgcag
    16681 atcgcccacc agcgttttca tcagcgttga tttaccgacg ccgttggtac ccagtaccgc
    16741 aagtttttca ccgacctcca gcagcaggtt gagattttta aacagtggac cgttatcaaa
    16801 ccctttggtc agaccttcca cttccagcgc gttacggaac agtttcttat cctgttcaaa
    16861 acggatgaac gggttctgac ggctggaggc tttcacctct tccagtttga ttttatcaat
    16921 ctggcgcgcg cgcgaagttg cctggcgaga tttcgaggcg ttggcgctaa agcggctaac
    16981 gaaagattgc aactcagcaa tctgcgcttt cttcttggcg ttatcggcca gcagacgttc
    17041 acgcgcctgg gtcgccgccg tcatgtactc atcgtagtta cccggataaa cgcgcagctc
    17101 gccgtaatcc agatccgcca tgtgggtaca gaccatgtta aggaagtgac ggtcgtgcga
    17161 gatgatgatc atggtgctgt cacgctcgtt cagcacctgt tccagccagc gaatggtgtc
    17221 gatgtcgagg ttgttggtcg gttcgtcgag caggagaata tccggatcag caaacagcgc
    17281 ctgcgccaga agcacacgca gcttccagcc aggagcaact tcactcatcg ggccgtagtg
    17341 ctgttccact ggaattccca cgccaagcaa caattcaccg gcgcgagctt ccgcagagta
    17401 accgtccatt tcgccgtatt taacttccag atcggccact ttatagccgt cttcctcact
    17461 catttccggc aaagcataga tgcggtcacg ctcctgcttc acttcccaca actctttatg
    17521 ccccatgatc accgtatcca gcacagtgaa ctcttcaaag gcaaactgat cctgacgcag
    17581 cttaccaatg cgctcgttgg gatcgaggga aacgttaccc aaagtcggct ctaagtcgcc
    17641 gccgaggatc ttcataaagg tggatttacc actaccgttc gcgccaatca ggccgtaacg
    17701 gttgccgccg ccaaatttga cggaaatgtt ttcaaacaac ggcttactgc cgaactgcat
    17761 ggtgacgtta ctggaaacta acacaggcgt atcctgaaaa gagatatgac aaaccgcgca
    17821 ttatgccata agtctgaaag aagatcctgc tcctcgctta aggtctacac tcaagccaaa
    17881 ggcaaaaaat gtgatttcgt acacatctga tttcactgtg agctggaatg aacttataat
    17941 gcgcttccaa tactctaata ttctcaaccc aatggcctgc caggcacaaa atctcgctta
    18001 acatgaatat gaaattgaaa acattattcg cagcggcctt cgctgttgtc ggcttttgca
    18061 gtaccgcctc tgcggtaact tatcctctgc caaccgacgg gagtcgcctg gttggtcaga
    18121 atcaggtgat caccattcct gaaggtaaca ctcagccgct ggagtatttt gccgcggagt
    18181 accagatggg gctttccaat atgatggaag cgaacccggg tgtggatacc ttcctgccga
    18241 aaggcggtac tgtactgaac attccgcagc agctgatcct gccggatacc gttcatgaag
    18301 gcatcgtcat taacagtgca gagatgcgtc tgtattacta tccgaaaggg accaacaccg
    18361 ttatcgtgct gccgatcggc attggtcagt taggcaaaga tacgcctatc aactggacca
    18421 ccaaagttga gcgtaagaaa gcaggcccga cctggacgcc gaccgcaaaa atgcacgcag
    18481 agtaccgcgc tgcgggcgaa ccgcttccgg ctgtcgttcc ggcaggtccg gataacccga
    18541 tgggtctgta tgcactctac atcggtcgcc tgtatgctat ccatggcacc aacgccaact
    18601 tcggtatcgg cctgcgtgta agtcatggtt gtgtgcgtct gcgtaacgaa gacatcaaat
    18661 tcctgttcga gaaagtaccg gtcggtaccc gcgtacagtt tattgatgag ccggtaaaag
    18721 cgaccaccga gccagacggc agccgttata ttgaagtcca taacccgctg tctaccaccg
    18781 aagcccagtt tgaaggtcag gaaattgtgc caattaccct gacgaagagc gtgcagacag
    18841 tgaccggtca gccagatgtt gaccaggttg ttcttgatga agcgattaaa aaccgctccg
    18901 ggatgccggt tcgtctgaat taatcttcaa aacttaaagc aaaaggcgga ctcataatcc
    18961 gcctttttta tttgccagac cctagttggc cgggagtata actaacaaaa catatcccac
    19021 caacgccgcc cacaacagca tcggtattga atagagatgg aaacgccacc agatgcggcg
    19081 atcgttcgcc atacgtagcg caatcaaact tgccagcgat ccgggtaata acccaaagcc
    19141 acctacgttt accgcccatg ccagtaataa agacggcggc acatagttca gcaacaatat
    19201 ggtactcggc acgttactga tcacctgcga taaaccgatt gccgttaacc ataacccggg
    19261 ttcagataga tgactcacgt tacccaacac gccttgcaac gctggaagct gggtcagtaa
    19321 atggacgtcg ataaacatcg ccataaacac cagcagcagc gtccagtcca cactgagcac
    19381 cacgcgacgt gccagcagcg caaagcctgc cgccacaatc accagtcccc acagctcttg
    19441 tttgaactcc agcgccgtta gaaagacgat atacagcccc agacaactcc acaccagccg
    19501 cggtttccac tccggtgttt gcacccccgt atggtattgc agcacctttc cagggaaaca
    19561 acaccagcac aggagcagga gcgtcagcat cattgcgcca gccagcggtg ccatttgggc
    19621 aataaatccg gcaaacgaaa gaccagaacg tccccagata agaatatttt gcgggttgcc
    19681 aattggcgtc agtagcgaac cagcattgac tgccagcgcc tcaaaaataa tcagacgatt
    19741 aaccgggatc tcacacagtc tttttagcgt gatagtcagc ggaacaacaa taaacagcgc
    19801 gacatcgttg gtcagaaagg tagaaagcag cgccgccgcc agcaccataa acatcgccag
    19861 ccgacgctcc gtagcaaagc ggcgcaccat tttgcgcccc agcacatcaa aataaccgct
    19921 taactccaca cctttggtca gcagcatcag gccgcttaag gtgatgatgg tgtgccagtc
    19981 gatagcagca ggccaggatt tcggtgcaaa gggcacgaaa aagcttaatc cgataccaac
    20041 aagaattaat aactgaaaaa aacgatcgcc ttgcagcgtg cgtaaaaaag gcaggctcat
    20101 ttggtaccgt gtttctgggt aaacaaacga aaagcgtcga gcgtctcttc actaacatgg
    20161 tgctccatgc cttccgcgtc gcgacgggcg atttccggac tgacgcccaa caccaacaag
    20221 aaattttcga ctatctgatg tcgctcgcgg ctttcctgcg ccagcttctc tccttctgcc
    20281 gttaaaaaca cgccacgcca ggggatcatt tcaatcagcc ccatggttgc cagccgctta
    20341 agcattttag ccaccgtcgg ttgcgaaact cccagacgag cagccatgtc cacctgacga
    20401 gcttccccca cttccctgat caagtcagaa atcagctcaa cgtaatcatc aataagctcg
    20461 cgccgatgcg cctctctgac ctggcggaac ccttcaacgt gctcttccac gttcactaac
    20521 tgcgtcactt tttttgctgt tggcgtacct gcgcgacgac tcattgtgct tcctcattat
    20581 ggtgacgcat acatagcgtt ctcatttcgt gcgcacattg taaaccagag ttgcgaaggt
    20641 acaaaaaatt aacgttttag caatagctat ataatatagc ctgtgctata tctgtatgta
    20701 atgcaatcat ccctcaagga tcgacgggat tagcaagtca ggaggtctta tgaatgagtt
    20761 caagaggtgt atgcgcgtgt ttagtcattc tccctttaaa gtacggttaa tactgctctc
    20821 tatgttgtgc gatatggtca acaacaaacc gcagcaagat aaaccttccg ataaatagcg
    20881 gcgtcgcggt acgccgcttc actcctgctt tcatgcaggc ataacgcgtt ttggcctgaa
    20941 aaaccccact ttttgtcgga tttgcaatcc ccttcgcaaa agatttgttc gtcagtagtt
    21001 gacctgaacg gcggctcgct ctatcttctt gcagccctgc gtatattgcg gctcgcggat
    21061 gcggacccct ttccactctt cacgcactct tgcaggtatt gacccttgac gccagggtaa
    21121 gcacatggcg tttgttacga tagtggcata tgaatttaac cctcaaagaa tcgcttgtta
    21181 cccgtagccg ggtatttagc ccgtggactg cgttctactt tttacagtcg ctattaatta
    21241 acctcggctt aggttacccc ttcagtttgc tctacaccgc tgcgtttacg gctattttgc
    21301 ttttgctatg gcgaacattg cctcgcgtac aaaaagttct ggtcggtgtc agttcgctgg
    21361 tggcggcttg ttatttccct tttgctcagg cctacggcgc gcctaatttc aatacattgc
    21421 tggcattgca ctccaccaat atggaagagt cgaccgaaat cctgacgatt tttccgtggt
    21481 acagctacct ggtcggctta tttatttttg cgctcggcgt aatagcaatc aggcgaaaaa
    21541 aagagaatga aaaagcgcgc tggaatacct tcgacagcct gtgtctggta ttcagtgtgg
    21601 cgacattttt tgttgctccc gtgcaaaacc tggcctgggg tggcgtattt aaactgaaag
    21661 atactggcta tccggtattt cgttttgcta aggatgtcat cgtcaataat aacgaggtga
    21721 ttgaagagca agaacggatg gcaaaacttt ccggaatgaa agatacctgg acggtcactg
    21781 ccgttaagcc gaagtatcag acctatgtgg tggtgatcgg tgaaagcgcg cgtcgcgatg
    21841 ccctcggtgc ctttggcggt cactgggaca ataccccgtt tgccagcagc gttaacggtt
    21901 tgatatttgc tgactacatt gccgccagtg gctccacgca gaaatcgctt ggcttaacgc
    21961 tcaatcgcgt agtcgatggc aaaccacagt ttcaggataa ctttgtcacc ctggcaaatc
    22021 gcgcgggctt ccagacctgg tggttttcca accagggcca aatcggcgaa tacgatactg
    22081 ctatcgccag catcgccaaa cgtgcagatg aagtgtactt cctgaaagaa ggtaattttg
    22141 aagcagataa aaacacgaaa gacgaagcgt tactggatat gaccgctcaa gtgctggcgc
    22201 aagagcactc gcaaccgcag ctgattgttc tgcatctgat aggctcgcat ccgcaggcct
    22261 gcgacaggac acaaggcaaa tacgaaacct ttgtgcaatc gaaagaaacg tcgtgctatc
    22321 tctataccat gacgcaaacg gacgatttac tgcgcaagct gtacgatcag ttacgcaaca
    22381 gcggcagcag cttctctctg gtttactttt ctgaccacgg tctggccttt aaagagcgcg
    22441 gcaaagacgt gcaatacctt gcccatgatg ataaatatca gcaaaatttc caggtgcctt
    22501 ttatggtcat ttccagcgac gataaagcgc atcgggtgat taaagcccgc cgctcagcca
    22561 atgacttctt aggctttttc tcgcagtgga cgggaattaa agcgaaggaa ataaatatca
    22621 aatacccgtt tatatctgag aagaaagccg ggccgatata catcaccaac ttccagttac
    22681 agaaggtgga ttacaaccat ctcggaaccg atattttcga cccgaaacct taaaaacaaa
    22741 aatccgcccc gagaggcgga ttttttatat caccaaagtg attagaagcg gtaaccaaca
    22801 ccggcaatcc aggtgcctac gtcaacgcta cgaatacggc tctgctcgta agagaagtcc
    22861 agagcaacgt tttccatcgg gttgaactgc agaccagcac cgtaggagaa accgtagtcg
    22921 ctggtgtcgt gtttgtaggt cgggtattca gtggtctgga atttaccata acccacaccc
    22981 actacaccgt agatgcttgc ccagtcgtta atgcggtaag ccggaccagc agtgatgccg
    23041 tagtactggt ttttgttgta gtcaccagag cttgcagtac gacttttctc ggtgtaagtg
    23101 aaagaaccga tcacacccag cgggctgttg tcttcttcat agcggtattt caggttgaaa
    23161 ccgcccattt tgttcatttg gccctgagcg tcgctctgtg cgtaaccgcc agttacggta
    23221 gaagtcgcag ctacggaagt acctgcggtg aaagccagaa ctgcggccag tgctgaaaga
    23281 catgcaattt ttttcataac cacctcaaat gtgattcaaa taagtcctaa gttttaaata
    23341 tatcaaaaat taatgggaaa ctcttcgcga tttgtgatgt ctaacgggcc atttcatgta
    23401 acagaacgtt tccatacacc gctatccatc taaatttaaa tcactttttc agagaactgc
    23461 gtaagtatta cgcatgtttt ccctgtcatt catccagatt attcctaatc accagactaa
    23521 tgattccatc aatcctggcg cattttagtc aaaacggggg aaaatttttt caacaaatgc
    23581 tcaaccagca ttgggtatat ccagtacact ccacgcttta cttaagtcta gatatttgtg
    23641 ggagaaagga tgcctggttc attacgtaaa atgccggtct ggttaccaat agtcatattg
    23701 ctcgttgcca tggcgtctat tcagggtgga gcctcgttag ctaagtcact ttttcctctg
    23761 gtgggcgcac cgggtgtcac tgcgctgcgt ctggcattag gaacgctgat cctcatcgcg
    23821 ttctttaagc catggcgact gcgctttgcc aaagagcaac ggttaccgct gttgttttac
    23881 ggcgtttcgc tgggtgggat gaattatctt ttttatcttt ctattcagac agtaccgctg
    23941 ggtattgcgg tggcgctgga gttcaccgga ccactggcgg tggcgctgtt ctcttctcgt
    24001 cgcccggtag atttcgtctg ggttgtgctg gcggttcttg gtctgtggtt cctgctaccg
    24061 ctggggcaag acgtttccca tgtcgattta accggctgtg cgctggcact gggggccggg
    24121 gcttgttggg ctatttacat tttaagtggg caacgcgcag gagcggaaca tggccctgcg
    24181 acggtggcaa ttggttcgtt gattgcagcg ttaattttcg tgccaattgg agcgcttcag
    24241 gctggtgaag cactctggca ctggtcggtt attccattgg gtctggctgt cgctattctc
    24301 tcgaccgctc tgccttattc gctggaaatg attgccctca cccgtttgcc aacacggaca
    24361 tttggtacgc tgatgagcat ggaaccggcg ctggctgccg tttccgggat gattttcctc
    24421 ggagaaacac tgacacccat acagctgctg gcgctcggcg ctatcatcgc cgcttcaatg
    24481 gggtctacgc tgacagtacg caaagagagc aaaataaaag aattagacat taattaaatt
    24541 tacatttctg catggttatg cataaccatg cagaatttct cgctactttt cctctacacc
    24601 gtctttatat atcgaattat gcaaaagcat atttattccg aaaattcctg gcgagcagat
    24661 aaataagaat tgttcttatc aatatatcta actcattgaa tctttattag ttttgttttt
    24721 cacgcttgtt accactatta gtgtgatagg aacagccaga atagcggaac acatagccgg
    24781 tgctatactt agtctcgtta attactggga cataacatca agaggatatg aaattatgag
    24841 taccgctaaa ttagttaaat caaaagcgac caatctgctt tatacccgca acgatgtctc
    24901 cgacagcgag aaaaaagcaa cagtagagtt gctgaatcgc caggttatcc agtttattga
    24961 tctttctttg attaccaaac aagcgcactg gaacatgcgc ggcgctaact tcattgccgt
    25021 acatgaaatg ctggatggct tccgcaccgc actgatcgat catctggata ccatggcaga
    25081 acgtgcagtg cagctgggcg gtgtagctct ggggaccact caagttatca acagcaaaac
    25141 cccgctgaaa agttacccgc tggacatcca caacgttcag gatcacctga aagaactggc
    25201 tgaccgttac gcaatcgtcg ctaatgacgt acgcaaagcg attggcgaag cgaaagatga
    25261 cgacaccgca gatatcctga ccgccgcgtc tcgcgacctg gataaattcc tgtggtttat
    25321 cgagtctaac atcgaataaa tccatcgctg atggtgcaga actttagtac ccgataaaag
    25381 cggcttcctg acaggaggcc gttttgtttt gcagcccacc tcaacgcact tatttagtgc
    25441 atccatctgc tatctccagc tgattaagta aattttttgt atccacatca tcacacaatc
    25501 gttacataaa gattgttttt tcatcaggtt ttacgctaaa taatcactgt gttgagtgca
    25561 caattttagc gcaccagatt ggtgccccag aatggtgcat cttcagggta ttgccctata
    25621 aatcgtgcat cacgtttttg ccgcatctct aaaaatcaat gagttgcaaa actggcacga
    25681 ttttttcata tatgtgaatg tcacgcaggg gatcgtcccg tggatagaaa aaaggaaatg
    25741 ctatgaagtc tgtattaaaa gtttcactgg ctgcactgac cctggttttt gcggtttctt
    25801 ctcatgccgc ggataaaaaa ttagttgtcg cgacggatac cgccttcgtt ccgtttgaat
    25861 ttaaacaggg cgataaatat gtgggctttg acgttgatct gtgggctgcc atcgctaaag
    25921 agctgaagct ggattacgaa ctgaagccga tggatttcag tgggatcatt ccggcactgc
    25981 aaaccaaaaa cgtcgatctg gcgctggcgg gcattaccat caccgacgag cgtaaaaaag
    26041 cgatcgattt ctctgacggc tactacaaaa gcggcctgtt agtgatggtg aaagctaaca
    26101 ataacgatgt gaaaagcgtg aaagatctcg acgggaaagt ggttgctgtg aagagcggta
    26161 ctggctccgt tgattacgcg aaagcaaaca tcaaaactaa agatctgcgt cagttcccga
    26221 acatcgataa cgcctatatg gaactgggca ccaaccgcgc agacgccgtt ctgcacgata
    26281 cgccaaacat tctgtacttc atcaaaaccg ccggtaacgg tcagttcaaa gcggtaggtg
    26341 actctctgga agcgcagcaa tacggtattg cgttcccgaa aggtagcgac gagctgcgtg
    26401 acaaagtcaa cggcgcgttg aaaaccctgc gcgagaacgg aacttacaac gaaatctaca
    26461 aaaaatggtt cggtactgaa ccgaaataat aacgctacac ctgtaaagcg cactggcagt
    26521 tccctctccc ctctggggag aggattaggg tgaggggcgc aaacccgctc cggggccatt
    26581 aattaccctg aatttgatta tttacaccac ggtaacagga acaacatatg cagtttgact
    26641 ggagtgccat ctggcctgcc attccgcttc tgattgaagg tgccaaaatg accctgtgga
    26701 tttcggtcct cggtctggct ggcggtctgg taatcggatt gctggcaggt tttgcacgca
    26761 ccttcggtgg ttggatagcc aaccacgtcg cgctggtctt tattgaagtg atccgcggca
    26821 cacctatcgt cgtccaggtg atgtttatct atttcgccct gccgatggcg tttaacgact
    26881 tacgcatcga cccatttact gcggcggtgg tcaccatcat gatcaactcc ggcgcgtaca
    26941 ttgcggaaat cacgcgtggt gcggtgctgt ctattcacaa aggttttcgt gaagcaggac
    27001 tggcgctcgg tctttcacgt tgggaaacca ttcgctacgt cattttaccg ctggcactgc
    27061 gtcgtatgct gccgccgctg ggtaaccagt ggatcatcag cattaaagac acctcgctgt
    27121 ttattgttat cggcgtggcg gaactgaccc gtcaggggca agaaattatt gccggtaact
    27181 tccgcgccct tgagatctgg agcgccgtgg cggtgttcta tctgattatt accctggtgc
    27241 tgagctttat tctgcgtcgt ctggaaagaa ggatgaaaat cctgtgattg aatttaaaaa
    27301 cgtctccaag cactttggcc caacccaggt gctgcacaat atcgatttga acattgccca
    27361 gggcgaagtc gtggtgatta tcgggccgtc cggttccggt aaatcgaccc tgctgcgctg
    27421 catcaacaaa ctggaagaaa tcacctccgg cgatctgatt gtcgatggcc tgaaggttaa
    27481 cgatccgaaa gttgacgagc gcctgattcg ccaggaagca ggtatggtgt tccagcagtt
    27541 ttacctcttc ccgcatctga cggcgctgga aaacgtcatg tttggtccgc tacgcgtgcg
    27601 tggcgcgaac aaagaagagg cggaaaaact ggcgcgtgag ctgctggcga aagtcggtct
    27661 ggcagaacgt gcacatcact acccttccga actttctggt ggtcaacagc agcgtgtggc
    27721 gattgcccgc gcgctggcgg tgaagccgaa aatgatgctg tttgatgaac cgacttccgc
    27781 tcttgacccg gaactgcgcc atgaagtgct gaaggttatg caggatctgg ctgaagaagg
    27841 gatgacgatg gtgatcgtga cccacgaaat cggttttgcc gagaaagtag cttcgcggct
    27901 gatctttatc gacaaaggcc ggattgcgga agatggcaat ccgcaggtgt tgatcaagaa
    27961 cccgccgagc cagcgcttgc aggaattttt gcagcacgtc tcttaataag acacattgcc
    28021 tgatgcgcta cgcttatcag gcctacagga tatctggcaa cttattaaaa ttgcatgaac
    28081 ttgtaggacg gataaggcgt tcacgccgca tccggcaaaa aagcccgcac gttgtcagca
    28141 atctgcttaa tatcccttcc tccctttcac ccgaaaggga ggcacaccag attcctctca
    28201 tttaaaatcg cccc
//
LOCUS       DAJVUY010000036        27851 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.036, whole genome shotgun sequence.
ACCESSION   DAJVUY010000036 DAJVUY010000000
VERSION     DAJVUY010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27851
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.036"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..527
                     /locus_tag="OQQ72_001422"
     CDS             <1..527
                     /locus_tag="OQQ72_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HCS2011206.1"
                     /translation="KYKIMANHHGIIFDEQRKRYIIGSITVSIDEMTNALDPVELAEI
                     INKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHN
                     GNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQINPGAGPEITTPWKSYQHEKNRN
                     GLMPLIRRRTMLQL"
     gene            893..1960
                     /locus_tag="OQQ72_001423"
     CDS             893..1960
                     /locus_tag="OQQ72_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS2011207.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ72_001424"
     CDS             1957..4692
                     /gene="rbbA"
                     /locus_tag="OQQ72_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HCS2011208.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMSAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDMWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4692..5816
                     /locus_tag="OQQ72_001425"
     CDS             4692..5816
                     /locus_tag="OQQ72_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011209.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
     gene            5889..6164
                     /locus_tag="OQQ72_001426"
     CDS             5889..6164
                     /locus_tag="OQQ72_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HCS2011210.1"
                     /translation="MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEI
                     KEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP"
     gene            6161..6520
                     /locus_tag="OQQ72_001427"
     CDS             6161..6520
                     /locus_tag="OQQ72_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HCS2011211.1"
                     /translation="MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSD
                     SIQGLQKEGELSLLEYLEDCKAAGIEPYARTEKIKTFTLRYPESLSERLNNAAAQQQV
                     SVNTYIIETLNERLNHL"
     gene            complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ72_001428"
     CDS             complement(6640..7041)
                     /gene="nikR"
                     /locus_tag="OQQ72_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HCS2011212.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ72_001429"
     CDS             complement(7047..7853)
                     /gene="nikE"
                     /locus_tag="OQQ72_001429"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HCS2011213.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ72_001430"
     CDS             complement(7850..8614)
                     /gene="nikD"
                     /locus_tag="OQQ72_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HCS2011214.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS"
     gene            complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ72_001431"
     CDS             complement(8614..9447)
                     /gene="nikC"
                     /locus_tag="OQQ72_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HCS2011215.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSH
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ72_001432"
     CDS             complement(9444..10388)
                     /gene="nikB"
                     /locus_tag="OQQ72_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HCS2011216.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ72_001433"
     CDS             complement(10388..11962)
                     /gene="nikA"
                     /locus_tag="OQQ72_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HCS2011217.1"
                     /translation="MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ72_001434"
     CDS             complement(12073..12660)
                     /gene="acpT"
                     /locus_tag="OQQ72_001434"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HCS2011218.1"
                     /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHT
                     LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWR
                     WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS
                     LSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN"
     gene            complement(12715..13751)
                     /locus_tag="OQQ72_001435"
                     /pseudo
     CDS             complement(12715..13751)
                     /locus_tag="OQQ72_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
     gene            13883..15100
                     /locus_tag="OQQ72_001436"
     CDS             13883..15100
                     /locus_tag="OQQ72_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2011219.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ72_001437"
     CDS             complement(15104..15661)
                     /gene="dcrB"
                     /locus_tag="OQQ72_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HCS2011220.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAENNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQ"
     gene            complement(15734..16399)
                     /locus_tag="OQQ72_001438"
     CDS             complement(15734..16399)
                     /locus_tag="OQQ72_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HCS2011221.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ72_001439"
     CDS             16620..16865
                     /gene="tusA"
                     /locus_tag="OQQ72_001439"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HCS2011222.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ72_001440"
     CDS             complement(16967..19165)
                     /gene="zntA"
                     /locus_tag="OQQ72_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HCS2011223.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEYKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(19239..19865)
                     /locus_tag="OQQ72_001441"
     CDS             complement(19239..19865)
                     /locus_tag="OQQ72_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000964717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HCS2011224.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYF"
     gene            20006..20365
                     /locus_tag="OQQ72_001442"
     CDS             20006..20365
                     /locus_tag="OQQ72_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HCS2011225.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGTSMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(20368..20637)
                     /locus_tag="OQQ72_001443"
     CDS             complement(20368..20637)
                     /locus_tag="OQQ72_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HCS2011226.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ72_001444"
     CDS             complement(20627..21223)
                     /gene="rsmD"
                     /locus_tag="OQQ72_001444"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HCS2011227.1"
                     /translation="MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ72_001445"
     CDS             21373..22866
                     /gene="ftsY"
                     /locus_tag="OQQ72_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCS2011228.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ72_001446"
     CDS             22869..23537
                     /gene="ftsE"
                     /locus_tag="OQQ72_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HCS2011229.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ72_001447"
     CDS             23530..24588
                     /gene="ftsX"
                     /locus_tag="OQQ72_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCS2011230.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ72_001448"
     CDS             24833..25687
                     /gene="rpoH"
                     /locus_tag="OQQ72_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HCS2011231.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ72_001449"
     CDS             25958..27061
                     /gene="livJ"
                     /locus_tag="OQQ72_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein LivJ"
                     /protein_id="HCS2011232.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ72_001450"
     CDS             complement(27260..27643)
                     /gene="panM"
                     /locus_tag="OQQ72_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HCS2011233.1"
                     /translation="MKLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
BASE COUNT         6593 a         7228 c         7741 g         6289 t
ORIGIN      
        1 ccaaatacaa aataatggca aatcatcatg ggataatttt tgatgagcag cgaaaacgtt
       61 acattatagg atcgataaca gtctctattg atgaaatgac caatgctctc gatccggtcg
      121 aattagcgga aattattaat aaaaagcacc atgctgtaat taatggcaaa aagtttaaaa
      181 atagccgggc tatctcttgt cgatccttta atcgttattt ttctgtttcg acagattaca
      241 gacctaaact tgaagcacta ttagcatgct cacaaatgtt aggtataaat caagttgttg
      301 cacataacgg taatggtgga agagaatgta taggtgaaac ggggacagtt ttaggtctta
      361 acgcccgtga cagtaaacat gctggaagaa tgttcagcat gcataattgc caaattaacc
      421 ctggtgcagg gcctgagata accactccct ggaagtctta ccagcatgaa aaaaacagaa
      481 atggacttat gcctttgatt agaaggcgca caatgttaca gctctgaacc atagacaaca
      541 tgaatattaa tgttactatc tggttgagac tgttgataaa acgtaaaaag gaatgctctg
      601 ttcctgcaac tgaacaggcg tgaaacgcga tccaacagga tggataccgt tttgtcagcc
      661 agttttatag atcacactta tgagtatgcg tgtttcattt acggccagga atgctgatga
      721 tgacaacatt actacccgtt ttcactaagc cttccccgtt ggcgctcaat gctctgcgcg
      781 ctggtcgtat ttgtcgtttc cttcttatcc cggatggaag aatccgctga acgtcgttcg
      841 gcggcagttg taacacgcgt cgtttgctta cagggattat ggcgggccga ttatggataa
      901 gagtaagcgc catctggcgt ggtgggttgt cggggcactg gcggtggctg ccgtcgtggc
      961 gtggtggctg ttgcgcccgg cgggtgtgcc ggaaggcttt gctgtcagca atgggcgcat
     1021 tgaagcgacg gaagtggata tcgccagcaa aattgccggg cgtatcgaca ccattctggt
     1081 gaaagaaggc cagtttgttc gcgaaggtga agtgctggcg aagatggata ctcgtgtgtt
     1141 gcaggaacag cgactggaag ccatcgcgca aatcaaagag gcacaaagcg ccgttgccgc
     1201 cgcgcaggct ttgctggagc aacgacaaag cgaaactcgc gccgcgcagt cgctggttaa
     1261 tcaacgccag gcagaactgg actccgtagc aaaacgtcat atgcgttccc gttcactggc
     1321 ccaacgaggg gctatttctg cgcaacagct ggatgacgac cgcgccgccg ctgagagcgc
     1381 ccgagctgcg ctggaatcgg caaaagctca ggtttctgct tctaaagccg ctatagaggc
     1441 ggcacgtacc aatatcattc aggcgcaaac ccgcgtcgaa gcggcacaag ccactgaacg
     1501 gcgcattgcc gcagatatcg atgacagcga actgaaagcc ccgcgtgacg gacgcgtgca
     1561 gtatcgggtt gccgagccag gggaagtgct ggcggcaggc ggtcgggtgc tgaatatggt
     1621 cgatctcagc gacgtctata tgactttctt cctgccaacc gaacaggcgg gcacgctaaa
     1681 actgggcggt gaagcacggc tgatcctcga tgccgcgcca gatctgcgta ttccggcgac
     1741 catcagtttt gtcgccagcg tcgcccagtt cacgccaaaa accgtcgaaa ccagcgatga
     1801 acggctgaaa ctgatgttcc gcgtcaaagc gcgtatccca ccggaattac tccagcagca
     1861 tctggaatat gtcaaaacgg gcttgccggg cgtagcgtgg gtgcgggtga atgaagaact
     1921 tccgtggcct gacgacctgg tggtgaggtt gccgcaatga cgcatctgga actggttccc
     1981 gtcccgcctg tcgcgcaact ggcgggcgtg agccagcatt atggaaaaac cgttgcgctg
     2041 aacaatatca ctctcgatat tccggcccgc tgtatggtcg ggctgattgg cccggacggc
     2101 gtcgggaagt cgagtttgtt gtcgttgatt tccggtgctc gtgtcattga gcagggcaat
     2161 gtgatggtgc tgggcggcga tatgcgcgac ccgaagcatc gccgcgacgt ctgcccgcgc
     2221 atcgcctgga tgccgcaggg gctgggcaaa aacctctacc acaccttgtc ggtgtatgaa
     2281 aacgtcgatt ttttcgcccg cctgttcggt cacgacaaag cggagcggga agtgcgaatt
     2341 aatgagctgc tgaccagcac ggggttagca ccgtttcgcg atcgtccggc agggaaactc
     2401 tccggcggga tgaagcaaaa acttgggctg tgctgcgcgt taatccacga cccggaactg
     2461 ttgatccttg atgagccaac aacgggggtt gacccgctct cccgcgccca gttctgggat
     2521 ctgatcgaca gtattcgcca gcggcagagc aatatgagcg tgctggtcgc caccgcctat
     2581 atggaagagg ccgaacgctt cgactggctg gtagcgatga atgccggaga agtgctggca
     2641 accggcagcg ccgaagagct gcggcagcaa acgcaaagcg ccacgctgga agaagcattt
     2701 attaatctgt taccgcaagc gcaacgccag gcgcatcagg cggtagtgat cccaccgtat
     2761 caacctgaaa acgcagagat tgccatcgaa gcgcgcgatc tgaccatgcg ttttggttcc
     2821 ttcgttgccg ttgatcacgt caatttccgc attccacgcg gggagatttt tggattcctt
     2881 ggttcgaacg gctgcggtaa atccaccacc atgaaaatgc ttaccggact gctgcccgcc
     2941 agcgaaggtg aggcgtggct atttgggcaa ccggttgatc caaaagatat cgatacccgc
     3001 cgtcgtgtgg gctatatgtc gcaggcgttt tcgctctata acgaactcac cgtgcggcaa
     3061 aacctggagt tacatgcccg tttgtttcac atcccggaag cggaaattcc cgcgcgagtg
     3121 gctgaaatga gcgagcgttt taagctcaac gacgttgaag atgttctgcc ggagtcattg
     3181 ccgctcggca ttcgccagcg gctttcgctg gcggtggcgg tgattcatcg cccggagatg
     3241 ttaatcctcg atgagcctac ttctggtgtc gatccggtgg cgagggatat gttctggcag
     3301 ttgatggtcg atctctcgcg ccaggacaaa gtgactatct tcatctccac ccactttatg
     3361 aacgaagcgg aacgttgcga ccgcatctca ctgatgcacg ccggaaaagt gcttgccagc
     3421 ggtacaccgc aggaactggt tgagaaacgc ggagccgcca gtctggaaga ggcatttatc
     3481 gcctatttgc aggaagcggc agggcagagc aacgaagccg aagcgccgcc cgtggtacac
     3541 gacaccaccc acgcgccgcg tcagggattt agcctgcgcc gtctgtttag ctacagccgc
     3601 cgcgaagcgc tggaactgcg acgcgatcca gtacgttcga cgctggcgct gatgggaacg
     3661 gtgatcctga tgctgataat gggttacggc atcagtatgg atgtggaaaa cctgcgcttt
     3721 gcggtgctcg accgcgacca gaccgtcagt agccaggcgt ggacactcaa cctctccggt
     3781 tcccgttact ttatcgaaca gccgccgctc accagttatg acgagcttga tcgtcggatg
     3841 agtgcgggcg atatcacggt ggcgattgag atcccgccca atttcgggcg cgatatcgcg
     3901 cgtggtacgc ctgtggaact cggcgtctgg atcgacggag cgatgcccag tcgtgccgaa
     3961 acggtaaaag gttacgtgca ggcaatgcac cagagttggc ttcaggatgt ggcgagccga
     4021 caatcgacac ccgccagcca aagcgggctg atgaacattg agacgcgtta tcgctataac
     4081 ccggacgtaa aaagcctgcc agcaattgtt ccggcggtga tcccgcttct gctgatgatg
     4141 atcccgtcaa tgctaagcac ccttagcgtg gtgcgggaaa aagagcttgg gtcgattatc
     4201 aacctttacg tgacccccac cacgcgtagt gaatttttgc ttggtaaaca gttgccatac
     4261 atcgcgctgg ggatgctgaa ctttttcctg ctctgcggcc tgtcggtgtt tgtgtttggc
     4321 gtaccgcata aaggcagttt cctgacgctc accctggcgg cgctgctgta tatcatcatt
     4381 gccaccggaa tggggctgct gatctccacc tttatgaaaa gccagattgc cgccattttc
     4441 ggaacggcga ttatcacgtt gatcccggcg acacagtttt ccgggatgat cgatccggta
     4501 gcttcgctgg aagggcctgg acgttggatc ggcgaggttt acccgaccag tcattttctg
     4561 actatcgccc gcgggacgtt ctcgaaagcg ctggatctga ctgatatgtg gcaacttttt
     4621 atcccgttgc tgatagccat cccgctggtg atgggcttaa gtatcctgct gctgaaaaaa
     4681 caggagggat gatgcgccat ttacgcaata tttttaatct gggtatcaaa gagttgcgca
     4741 gtctgctcgg tgataaagcg atgctgacgc tgattgtctt ctcgtttacg gtgtcggtgt
     4801 attcgtcagc gaccgttacg ccaggatcgt tgaacctcgc gccgatcgcc attgccgata
     4861 tggatcaatc gcagttatcg aaccggatcg ttaacagctt ctatcgtccg tggtttttgc
     4921 caccggagat gatcaccgcc gatgagatgg atgccggact ggacgccgga cgctatacct
     4981 tcgcgataaa tattccgcct aattttcagc gtgatgtcct cgccggacgc cagccggata
     5041 ttcaggtgaa cgtcgatgcc acgcgcatga gccaggcatt taccggcaat gggtatatcc
     5101 agaatattat caacggtgaa gtgaacagct ttgtcgcgcg ctaccgtgat aacagcgaac
     5161 cgttggtatc gctggaaacc cggatgcgct ttaacccgaa ccttgatccc gcgtggtttg
     5221 gcggggtgat ggcgatcatc aacaacatta ccatgctggc gattgtattg accggatcgg
     5281 cgctgatccg cgagcgtgaa cacggcacgg tggaacactt actggtgatg ccgataacgc
     5341 cgtttgagat catgatggcg aagatctggt cgatggggct ggtggtgctg gtggtatcgg
     5401 gattatcgct ggtgctgatg gtgaaaggtg tactgggcgt accgattgaa ggctcgatcc
     5461 cgctgtttat gctgggcgtg gcgctcagtc tgtttgccac cacgtcaatc ggcattttta
     5521 tggggacgat agcgcgttca atgccgcaac tggggctgct ggtgattctg gtgctgctgc
     5581 cgctgcaaat gctttccggt ggatccacgc cgcgcgaaag tatgccgcag atggtgcagg
     5641 acattatgct gaccatgccg acgacacact ttgttagcct cgcgcaggcc attctctacc
     5701 ggggtgccgg attcgaaatc gtctggccgc agttcctgac gctgatggca attggcggcg
     5761 cgtttttcac cattgcgctg ctgcgattca ggaagacgat tgggacaatg gcgtaaggaa
     5821 gggaaacttg acttcatact gtgatgtcat actattgatg tcataaagtg aagtcataag
     5881 gacatgccat gagaaccaag gtacaggctt tacggaagaa acaaaaaaat acattggatc
     5941 aaatatttaa aactcctgtt cctcaaggga tcaagtggtc tgatatagag tcactggtta
     6001 aagcattagg cggagaaatt aaggaaggaa gaggttcgcg ttgtaagttc atactaaata
     6061 tgagcgttgc gtgtttccat cggcctcatc cgtcgccaga taccgataaa ggcgctgtag
     6121 aaagcgtgcg tgactggtta ctaagtatag gggtaaaacc atgatcaaac tgaagacgcc
     6181 aaactctatg gagattgccg ggcaaccagc tgttattacc tacgtgccag aactgaatgc
     6241 atttcgtggc aaattcctgg gcttgtcagg ttattgtgat tttgtctctg acagcattca
     6301 ggggctgcaa aaagaagggg aactttccct gctagagtat cttgaggatt gtaaagctgc
     6361 gggtattgag ccgtatgcgc gtacagaaaa gattaagacc tttacgttac gctatccaga
     6421 atcgctgagt gaacgcctta ataatgcggc tgcgcagcaa caagtctctg ttaataccta
     6481 tattattgaa acactgaatg agcgtttgaa tcatttataa attttagcgg cgtacattac
     6541 gcagaatatc tgcctttaca ggatctatct atgcaactga acttaatttt ataaattaag
     6601 ttcagttaat atcttttctt tcctcgtttc agaaataact caatcttcct tcggcaagca
     6661 ctgcaaatgc ccatgccgca cgccgcgctg ggcgataacg tcatcggcaa aatgctgcac
     6721 gtcgcccata tcacctttca gcacggcgat ttccagacag tcgtcgtgat tgatatgcac
     6781 atgcagcgtg gcgacggaga gatcgtggtg atggtgctgg gtggagacaa tgcggctggc
     6841 taagtcgcgt ttttcgtgtt catacacata ggagagcacc gcgaaacctt gcgtgccgtg
     6901 ctgctgagtg gcctcctggg ccagggcgct acgcagaata tcgcggatag cttcggaacg
     6961 gttgttataa ccacgacgct ggctcaggct gtccagcgtc tccagtaaat cgtcatcaag
     7021 cgtgatggtg actcgttgca tttgcgttaa accttttctg tggcgcgacg gcgcacgggg
     7081 aatgcgggta ataccgcgtt ttgtagcaca cgtccggcgt cagaggaaaa ggttaattta
     7141 tctcccaccg cctgggtttc gacgatttgt ccgttgtcca tcaccatcac ccgctggcaa
     7201 aagcgttcta caagacgtaa gtcgtgggtg atgaacaggc aggcggtgcc aaactgttgt
     7261 tgcagctttt tcagcaggcg aatgacgccc gcctgtaaca cgagatcaag gttagaaacg
     7321 gtttcatcca gaatcagcaa tttcggttcg accgccagcg cgcgtgccag gcagacgcgc
     7381 tggagctggc cgccgcttaa ctgcggtggg cgtttgtcga gaacgctgtc atcgagatcg
     7441 accgccttca gcatttcgct ggcgcgcgcc agttgttcgg attttttcag tgatagcagg
     7501 tggcgcatcg gttcacgcag gatctcgcgc acggttttgc gcggattcac ggcactgatg
     7561 gagtcctgaa acaccatctg aatatcacgg cggaaggctt tacgttgggc gcgattaagt
     7621 ttcgccagcg attcgccgcg ccagctaata ttcccttgtg agggagactc taagcctacc
     7681 agcagccgcg cgagggtgct ttttccgcag ccgctgcgtc ccagcagggc gacggtttcg
     7741 ccgcttttca gggtcaggga aacgttattc agcaccgcct gatgttgatg ttttccgcta
     7801 aatccaccgt gggcatagtg atgggaaagg ccgctgacgt taagtaaggt catgatgcca
     7861 gctccatacc gtagagggcg agatgagcgg aaaccaggct gcgcgtcacc gtatgtttgg
     7921 gggcgttaaa cagcgtttct acatcgccct gttcgacaat tttaccttgt gacatcaccg
     7981 ccacgtcatc cgccagacgc gccacaacgc ccatatcatg ggtgaccagc agcattcccg
     8041 gcgcttgttt ttgcataatg ctttccagca gatcgaggat gcgcgcctgt gctaccacgt
     8101 cgaggtcggt ggtcggttca tcggcgatga taaacggtga ttcacacagc accgccatcg
     8161 caatcatcat gcgctgcaac atgccgccgc tcatctcgaa cgggtacagc ttcagcacgc
     8221 gcgcggcgtt ttccagcccc accgcttcta tggcagcggt aagcgtagcg tcatcggcgg
     8281 gtttccctaa cgccaggcag gtttcccgcg cgtgggtgtg catggtgtgt agcggattaa
     8341 aggcgctgcg cgggttctgc atgatggtgg caattttgat gccgcgcagg gcgcagggat
     8401 aaaccgcttt gccatcggct aaaatttccc ccgccgtctg gcgaacgcca gcgggcaaaa
     8461 tgcccagcgt cgcggcgcag gttaatgatt tcccgctgcc gctaccgccg actaacgcca
     8521 gcacgcgccc gcgttgcagg gttaacgata caccgtgtac cagcggctgc gcggcctgta
     8581 gcgcgatatt acgtagttca atctgttgcg gcattagtgt gcgtgctccg tcaccagatg
     8641 agggtccaga tgatcgcgca gtgcgtcacc caccaggtta aaggccatca cgctgataaa
     8701 cagcgccagc cccggccaga acatttgcag cggctgggtc cagatatact ggcgcgcgtc
     8761 gttaatcatc acgccccatt cggcggtcgg cgcggtcaca ccgaggccaa ggaaagacat
     8821 ccccgagacg tgcagcatca tatggccgat atccagcgtt gccagcacca gcagcgaagg
     8881 gatcaccgcg cctgccagat gatcgacaaa cactcgcaca tggcccgcac cggaaagccg
     8941 tgacgccagc acaaactcgc gttggcgtag tgaaatcacc aggctgcgca ccatgcgtgc
     9001 ataccacgcc cagtgcgaca gggcgatggc gataattacg ttggtcagcc cggtgccgag
     9061 cacgccaacc ataaagaacg acagaatcga ggtcgggaag gtcataaaca tatcggcgac
     9121 gcgcatggtg gcctgatcaa cgcgcccgcc aatcaacccg gcgctgccgc caataaccag
     9181 ccctaatgtc agcaccagca gcaggcaggc cattaccgaa ccgagcgaca cgcgggtcgc
     9241 tgccatcagc cgcgagaaaa tatcgcgacc taagtgatcg gtgcccagcc agtgctgcgc
     9301 atccggcgaa agcaggtgcg acggcaaatc aatcgcctgg gggtcatacg gcagccacca
     9361 ctggctggtg agcgcaatca gcgccagcag ggcgataatg atcagcgcca ggcgtaccga
     9421 ccagcgggaa gagaggaaaa agttcacgcg tgcgctcctt catgacgacg aatgcgcggg
     9481 tccagcgcgg cgttgagcaa atcgacaatc aaattacaga ccacaaaaac caccaccatc
     9541 atcagcgtaa agcactgaat caccggatag tcacggttaa aaatcgccga caccgcatag
     9601 cgcccgacgc caggccaggc aaagatgttt tcgataatca tcgtcccgcc aatcaattcg
     9661 ccaatgtgca tccccacggc ggtgatcatc ggcagcgagg cattgcgcag aatatggcgg
     9721 cgttcggtct gtttgtcatt caggccgcgt agccgcgccc aggtgacgtg acgctgaccg
     9781 gcgacgtcca gcatactggc gcgcagcagt cgcgcgttaa tcgccagcga cataaaggcg
     9841 atggaaaccg caggcaaaat gatgtgctgc cagccgccgt agcccatcgc gggtagccat
     9901 tgcagataca ccgaaaacgc catcactagc aaaaatgcca gccagaagtt gggcatcgac
     9961 acgccaagaa acgcgataaa gcgcacggcg aaatccggca aacgatcgcg gtggcgcgcc
    10021 gcccagatac cgagcggtac ggaagtgagc agaattaata ccagcgccgc acctgcaagt
    10081 tccagcgtgg cgggcaggaa gttcagcata tcgtccagca ccgggcgttg gctggcgaat
    10141 gagataccaa agtcaagatg cagcgccttc cacaaccagg tgccgtactg gacgtacagc
    10201 ggctgatcca gtccgagcat ggtgcgggta gaggccagca tctccggcgt cggcggcagg
    10261 ttagacagac gcaaataatc gagcgccggg tcgccggtac cgaggcgcag catcagaaaa
    10321 atgatcaccg aggcggcgag caccatcggg atcagcagca gaaagcggcg taatacgtaa
    10381 cgcaacatta aggtttcacc ggtttaatct gttcgaacgg aatttcggtg gcgatcggcg
    10441 cgtaggggat gttacccagc tccggttttg ataccaccat cattgagatg taactgatag
    10501 gcagataaac cgcctcgtca tgcagacggg tcagaatgtc gcgatacagt gcctgacgtt
    10561 gcgtttcgtc atgggtcgcc agcacttcgc cgatctcttt atcaatcagc ggtttgtcgg
    10621 ctaatccttg ctgtgcctgg aagtcagcgt gcgacggtac gcgcattgaa ctcaggaagg
    10681 cgtgtggatc gtatggcgcg ccccaggtgc ggtggaaaat catgccaaaa cgaccgtcgc
    10741 gctgacgagc atagatactg ctctcttctt cgccaatcag cgagacatct gcgccaatct
    10801 ggcgcatatc agcctgaatg atttccgcca tcgatttgct taacgcatcg gtgccgatga
    10861 acgacagttc aatgcgcagc ggctgaccat ttttctcgcg gatgtctttg cccgcaggca
    10921 gcgtccaacc ggctttttcc agcaacgctt tcgctttctg cggatcgtac tggcgcggtt
    10981 tcaggccgag gttggcgtag ggcacagaag gggcaaacag ggtgtcggcg acctgctggg
    11041 tgccatacaa cgcgttatca atcagcgatt ttttgtttac cgcgtaatta agagcttcac
    11101 gtactgccag ctcattggtg ggggttttgg cggtattaag cgccagcatc acggtttcga
    11161 tcggctgtga cagttgggta tggtaagccg ggttctggct aaagcgggcg aaggtatcga
    11221 gcggtaataa cccttcgttt ccgtacagca ggtcgatatc gccagtttca aacgccaccg
    11281 cgcgggtagt cgggtccggg atgacgttaa aggtgatctt tttaatcgct ggcttttcgc
    11341 cccagtagtt ttcgttacgg acgaagacat cgtactgatt cagtttcgat tcctgcaaaa
    11401 tccacggtcc ggtgccaatc ggcgctttaa ttccgttcat ggtttcatgg tttttaaact
    11461 gcgagggagc gataaaacgg aaaggacggg gcagggccag ttcttgcagg aaaggatagt
    11521 aggcgctttt cagggtaatt tgcagctctg ttttactgag tgctttaaca tcaacaatct
    11581 ggtttgccag ctccagccag gcgtgacgtt gacggttatc gagcactgcg cggaagtttt
    11641 ctgccgccgc ctcggcatcg aacggttcac cgttggataa tttcacgtca tcacgcaggg
    11701 tgaaggtcca ggttttacca tcttctgaat gagtccagct ttttgccagc cacgggatca
    11761 ccgaaccgtc tgcctgatat ttcaccaatg gttcataaac catgctctgg gcgaacatct
    11821 ggttaggcgt gtaaaggtgc gggtttagtg gcccgacatt caccggccag gcggtagtga
    11881 tttcatctgg tgcagcggca tggacgataa aagacgcaca agccagcagc gcaaatagag
    11941 tgcggcggag tgtggagagc atgataaccc caatggatta aaatagatgg cggaaataag
    12001 tatgacgatt ttaagtattc gtcatactga ttacctgttc tggatcaata gatgggcagt
    12061 cgggtgggcg gatcagttaa ctgaatcgat ccattgcaca ctgtcggcgg tgagcgtaaa
    12121 gggggtgggg gtgcagatcg caaggcttaa attttctagc tgacaatggc tgactgacag
    12181 cgaggagtga taggtgctat ctacgctgac gatttgccag gcgctgccgc cacgctgttt
    12241 aacgatggct tctttgcgcg tccagatgcg ccagaacatt tccagttgct gatcaggatg
    12301 cacggcgtcc atttcagcgt gttccccgag gctgaacacg gcgttcgcca gccagcgcca
    12361 gttggcgcgc gggcgaatca cttcgatatc gcagccgact tcgccttcat cgctcaacag
    12421 cagagcgata tcgtcaccgc tatggcttaa gttgaaccat agcggcgttt ccggcgcgaa
    12481 tgcaggtttg ccttgttcgc catagatgat ctccggtagc ggggaaagcg tgtgcgaaag
    12541 caatgcacgc cccgccagcc agcgttcgcg tcgtggacct tgcggtgctt gctcgcgtaa
    12601 acccggtggc agtggagctg cgcttaaggt cgaaactttc cccagaacta tccgatacat
    12661 atcagggcca acgtttaatg gaaaatgaaa gtgcgtatcg tatcacttgt cgcctcatcc
    12721 cggtaaccga cttttcggtc tgcctagccc cagtaaaatc gccagtttgc taccgccttt
    12781 ggtggtttcc atccagattt tacacacgct ggttaatggc accgaaagta gcatccctac
    12841 cgggccgagc agccatcccc aaattaacaa tgaaagaaat accaccatgg tggacatccc
    12901 caggcgatgg cccatcatcc gtggtcgatg accatatgga ccactaaaaa caatgcgccg
    12961 accagaatac atgcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg
    13021 gaaattaccg cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc
    13081 agcgcaaact gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa
    13141 ctgagtagcg tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct
    13201 gcgatgtgaa tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact
    13261 tcaaacagca taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa
    13321 agcccgatca ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc
    13381 attcgctccg gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt
    13441 ttgcgcgtca gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc
    13501 gccagtacgc cgactagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg
    13561 gtaacggggc gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg
    13621 gcaaaaaaca gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg
    13681 aggatcacta ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga
    13741 ggggtttcca ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgtca
    13801 gcaatattct gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg
    13861 ttgtaaaaat gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt
    13921 gcgcctgaat ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat
    13981 cgggttgccg ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt
    14041 ctgggcagga ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc
    14101 cggacgttac gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg
    14161 ctttttgagc ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag
    14221 cctgttatta ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac
    14281 gggatcgacc ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc
    14341 gtggaacggc attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt
    14401 ttatcactgg ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc
    14461 cattttgttg gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt
    14521 tcgcgcggtg cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg
    14581 atttggcgtc atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc
    14641 ggctttcgcg ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa
    14701 cggcattaac cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat
    14761 cggcctgcta ctggttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact
    14821 ggcgggggca gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt
    14881 tccgcagcaa aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct
    14941 tggcgtgacc ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta
    15001 tctggcggcg gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg
    15061 gcctccggaa cacgtccctg aggccgcctc atcatcttaa aacttactga ataaccagcg
    15121 tattaatgat gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa
    15181 tttgcatggt cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct
    15241 ggcctttcgc ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg
    15301 ctttattggt taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct
    15361 tcgccagcac cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct
    15421 gcccggtggc gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct
    15481 ggtcggtcat atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat
    15541 tcccggtagc gttattttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat
    15601 cacaggccgc aagccccata accagcaggc caattccgac atatttaacc agattgcgca
    15661 ttgacttctt cctttcgata aacggccata acggctcatt catccatctt atcacaactc
    15721 tgataacgaa cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt
    15781 tcaacagcat attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca
    15841 ctttgaaaca gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg
    15901 ggctacgcca gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg
    15961 tggacgctgt cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca
    16021 cgtcgaggat ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa
    16081 acaggttgaa gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg
    16141 agatgacgta ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca
    16201 gcggtgcgcc aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa
    16261 acgcgcccca ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac
    16321 tggaggtgat caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag
    16381 tttgcgagaa aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa
    16441 tacgtacgac acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc
    16501 gcatgatact gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg
    16561 tttgcttacg gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa
    16621 tgaccgatct cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg
    16681 aacccgtaat gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga
    16741 ttatcgccga cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac
    16801 acgaactggt tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg
    16861 gttgatgggg gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca
    16921 gaggggcgag gggaccgatc gcgctcaatg ttgcgatcgg tttgccttat ctcctgcgca
    16981 acaatcttaa cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca
    17041 gccatagtcc ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg
    17101 caatggtgat gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca
    17161 ccaggccgcg caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg
    17221 tgccactgcc cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac
    17281 cgtcaccgac catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat
    17341 attccggcaa caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg
    17401 cgcgtggatt atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga
    17461 tggcagttgc agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat
    17521 cattacgtac taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag
    17581 caaatgcatc agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct
    17641 gcgcttcaat gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg
    17701 cagcaacctg tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga
    17761 ccgccgccgc cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg
    17821 taacgcgcgg tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac
    17881 gacctagttg ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg
    17941 ccagcccgga ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca
    18001 gcagcagcgt caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg
    18061 gcaccagcgt caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac
    18121 ggtcgataaa ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa
    18181 tccggtcaat ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta
    18241 cgctggtggc tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc
    18301 cggtcagggc gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca
    18361 aacgcccacc tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct
    18421 cttcccgctc accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc
    18481 taacgccctg acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca
    18541 gcagcaacac catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta
    18601 cgctcattaa ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat
    18661 gagcaatcgg gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat
    18721 gattgaactg ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca
    18781 gattctcttt caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat
    18841 agcccgcttt ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca
    18901 ccagtttttc ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg
    18961 cattttctac cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc
    19021 gggtgccgga gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac
    19081 agtcgttggc gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct
    19141 tgccgtgatt gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga
    19201 aggatacact ctggagtcga ctctagagtc aagttttatc agaaatacag tgagcggacg
    19261 atgaggaagt gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt
    19321 cggcgatagt ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca
    19381 aacgcagaga gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc
    19441 atcaccagcg tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc
    19501 cagataatcg ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag
    19561 aaagagagcg tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac
    19621 gcgccgatgg cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt
    19681 gaggcgcaca gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag
    19741 gccagtaaca gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc
    19801 ccacgatacg atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa
    19861 agcatcttag ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt
    19921 ccagtttagt ggcgagggtg gacggatgac aacaccataa ctagcagggt atgcttattt
    19981 ccgcattttc cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat
    20041 tggcttaatt gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga
    20101 taatgatatg gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc
    20161 gattaacgat cgccgttcgc gccagcagga agtgactccg gcaggcacca gtatgcgcta
    20221 tgaggcaagc ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca
    20281 gcagtaccat gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt
    20341 tgttagcttt gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac
    20401 cagcagttca aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg
    20461 gccatctttc ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt
    20521 aaaaatcagc gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt
    20581 gaggattaaa aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac
    20641 tttctccttg tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc
    20701 gatgtaatga ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat
    20761 aaatcagggc ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta
    20821 acaagccacg gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg
    20881 ccaggaatga catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca
    20941 gattcttaat taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag
    21001 cgtagcgcga taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt
    21061 gggcgtcaac aatgaccgga gccagccagt taaacaatgt ttcgcgtacg cggtcggtgg
    21121 tggggcgcag acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa
    21181 taatgcggat ttggccgctg ccggaatgat tcggtttttt catgataaat tgctcaatcc
    21241 gccagataac acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca
    21301 tcattttttt agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga
    21361 gtgtagtcgc aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt
    21421 caaaaagagc agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa
    21481 gaaatcgttc aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg
    21541 caggcgcata ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa
    21601 caggttgctg aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg
    21661 gtcgtagaag aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa
    21721 gacgtcaacg ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag
    21781 attgtcgaag cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa
    21841 gcacaggcgc tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa
    21901 gagcagccgg tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc
    21961 gcgcgcctga aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc
    22021 ctgttccgcg gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg
    22081 atcgccgatg tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca
    22141 tcccgcaagc agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc
    22201 gagattctgg cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc
    22261 ctgatggtgg gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag
    22321 tttgagctgc agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg
    22381 gttgaacagc ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc
    22441 ggtgcggatt ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc
    22501 gacgtcctga ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag
    22561 ttgaagaaaa tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg
    22621 ctgactattg atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa
    22681 gccgttggct taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta
    22741 attttctcgg tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt
    22801 attgaggatt tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag
    22861 gattaacaat gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc
    22921 tgcagggcgt tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg
    22981 gcgcagggaa aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga
    23041 aaatctggtt tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc
    23101 gccgccagat tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg
    23161 ataacgtggc gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg
    23221 tgtcggcggc actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc
    23281 tttccggcgg tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg
    23341 tactgctggc ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac
    23401 gtctgtttga agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca
    23461 acctgatttc acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag
    23521 gcgtgggcca tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg
    23581 gatcgcttcc gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc
    23641 gcgaaatcct cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc
    23701 tatgccttcc acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg
    23761 gtgatggtta tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac
    23821 gttaatcagg cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa
    23881 acgctggacg atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg
    23941 gagaaagtga actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt
    24001 tttggtggtg cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc
    24061 ccgaaactcg attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag
    24121 attaacggca ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg
    24181 accgggctgg tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc
    24241 ctcgtcatcg gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg
    24301 cagaaactga ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca
    24361 ctgctgggat tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga
    24421 ttgtcatcgg cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt
    24481 ttatcgttcg atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca
    24541 gcgtggcttg ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt
    24601 atactctttc cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg
    24661 tatttcatct ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt
    24721 ggataaaatc acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc
    24781 acagttgttg ctaccactga agcgccagaa gatatcgatt gagaggattt gaatgactga
    24841 caaaatgcaa agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc
    24901 taacgcgtgg ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta
    24961 ccatggcgat ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca
    25021 tattgctcgt aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa
    25081 catcggcctg atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcctggtctc
    25141 cttcgccgtt cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat
    25201 cgtcaaagtt gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa
    25261 gcagcgtcta ggctggttta accaggatga agtcgaaatg gtggcccgtg aactgggcgt
    25321 aaccagcaaa gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga
    25381 tctgtcttcc gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga
    25441 taaatcatct aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa
    25501 ccgtctgacc gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg
    25561 ctggctggac gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc
    25621 cgctgaacgt gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga
    25681 agcgtaattt ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt
    25741 gggcctctac aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta
    25801 ataaactgtc aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat
    25861 gctgctaaag cacgggtagt catgcataaa acgaaataaa gtgctaaatc acaacaccac
    25921 aacacacgta ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt
    25981 actggcagga tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt
    26041 cgcggtcgtg ggcgcaatgt ccggtccggt tgcgcagtac ggtgaccagg agtttaccgg
    26101 cgcagagcag gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca
    26161 aatcgtaaaa tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt
    26221 cgttaacgac ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc
    26281 gtctgatatc tacgaagacg aaggcatttt aatgatcacc ccagcggcaa ccgcgccgga
    26341 gctgaccgcc cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg
    26401 gccgacggcg gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca
    26461 cgacaaacag caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg
    26521 caatgctaac gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct
    26581 ggtggcgcgt ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga
    26641 aatggggcaa atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc
    26701 ggaaggtgtg gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct
    26761 ggtgaccaag ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat
    26821 caaagcgaaa aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca
    26881 atctttgcag gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa
    26941 agcgaactcc gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa
    27001 aggctttgag ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta
    27061 atcattaatc ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat
    27121 gccggatgcg gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc
    27181 aacacacatt gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact
    27241 tttgaaatca acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca
    27301 gtgcctgcat aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc
    27361 agcatgaaac gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc
    27421 gacgtcgggt gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg
    27481 ttacccgtac ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat
    27541 cgtcaacctg taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt
    27601 cctggtcgct aaagttttct aatcgaatga tggtcagctt catgggtaac ccgtgtaaat
    27661 cacaaaagtg gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc
    27721 ttttggcagg tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg
    27781 aaaaataccc agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat
    27841 tttatgctga c
//
LOCUS       DAJVUY010000037        27676 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.037, whole genome shotgun sequence.
ACCESSION   DAJVUY010000037 DAJVUY010000000
VERSION     DAJVUY010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27676
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.037"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(211..420)
                     /gene="fumD"
                     /locus_tag="OQQ72_001451"
     CDS             complement(211..420)
                     /gene="fumD"
                     /locus_tag="OQQ72_001451"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HCS2011234.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMETVINALVK"
     gene            977..2389
                     /gene="pykF"
                     /locus_tag="OQQ72_001452"
     CDS             977..2389
                     /gene="pykF"
                     /locus_tag="OQQ72_001452"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase PykF"
                     /protein_id="HCS2011235.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            2700..2936
                     /gene="lpp"
                     /locus_tag="OQQ72_001453"
     CDS             2700..2936
                     /gene="lpp"
                     /locus_tag="OQQ72_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein lipoprotein Lpp"
                     /protein_id="HCS2011236.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
     gene            complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="OQQ72_001454"
     CDS             complement(3000..4004)
                     /gene="ldtE"
                     /locus_tag="OQQ72_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
                     /protein_id="HCS2011237.1"
                     /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV
                     QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL
                     AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER
                     GIKLLPVVPAGPNNPLGRYALRFAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK
                     ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ
                     FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRARQ
                     "
     gene            complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="OQQ72_001455"
     CDS             complement(4153..4569)
                     /gene="sufE"
                     /locus_tag="OQQ72_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HCS2011238.1"
                     /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP
                     QNSIQGCQNQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS"
     gene            complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="OQQ72_001456"
     CDS             complement(4582..5802)
                     /gene="sufS"
                     /locus_tag="OQQ72_001456"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HCS2011239.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="OQQ72_001457"
     CDS             complement(5799..7070)
                     /gene="sufD"
                     /locus_tag="OQQ72_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCS2011240.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTSLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA
                     FAAELTEALRDEGLKQQVLARIGQRLPGGAR"
     gene            complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="OQQ72_001458"
     CDS             complement(7045..7791)
                     /gene="sufC"
                     /locus_tag="OQQ72_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HCS2011241.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="OQQ72_001459"
     CDS             complement(7801..9288)
                     /gene="sufB"
                     /locus_tag="OQQ72_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HCS2011242.1"
                     /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR
                     AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT
                     CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA
                     EQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP
                     MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN
                     AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL
                     RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI
                     MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ
                     RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG"
     gene            complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="OQQ72_001460"
     CDS             complement(9297..9665)
                     /gene="sufA"
                     /locus_tag="OQQ72_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HCS2011243.1"
                     /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            complement(10213..10401)
                     /locus_tag="OQQ72_001461"
     CDS             complement(10213..10401)
                     /locus_tag="OQQ72_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiH family protein"
                     /protein_id="HCS2011244.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            complement(10501..10911)
                     /gene="menI"
                     /locus_tag="OQQ72_001462"
     CDS             complement(10501..10911)
                     /gene="menI"
                     /locus_tag="OQQ72_001462"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HCS2011245.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            complement(10908..13964)
                     /locus_tag="OQQ72_001463"
     CDS             complement(10908..13964)
                     /locus_tag="OQQ72_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS2011246.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDVLDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPELDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            14353..15465
                     /gene="ydiK"
                     /locus_tag="OQQ72_001464"
     CDS             14353..15465
                     /gene="ydiK"
                     /locus_tag="OQQ72_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HCS2011247.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            15651..15758
                     /gene="rprA"
                     /locus_tag="OQQ72_001465"
     ncRNA           15651..15758
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="OQQ72_001465"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            15893..16272
                     /locus_tag="OQQ72_001466"
                     /pseudo
     CDS             15893..16272
                     /locus_tag="OQQ72_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            16217..16939
                     /locus_tag="OQQ72_001467"
                     /pseudo
     CDS             16217..16939
                     /locus_tag="OQQ72_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310425.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            16951..17817
                     /gene="ydiB"
                     /locus_tag="OQQ72_001468"
                     /pseudo
     CDS             16951..17817
                     /gene="ydiB"
                     /locus_tag="OQQ72_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
     gene            17849..18607
                     /gene="aroD"
                     /locus_tag="OQQ72_001469"
     CDS             17849..18607
                     /gene="aroD"
                     /locus_tag="OQQ72_001469"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HCS2011248.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKETVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            18753..20348
                     /locus_tag="OQQ72_001470"
     CDS             18753..20348
                     /locus_tag="OQQ72_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS2011249.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFNFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEERVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            20362..21513
                     /locus_tag="OQQ72_001471"
     CDS             20362..21513
                     /locus_tag="OQQ72_001471"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS2011250.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(21556..22467)
                     /locus_tag="OQQ72_001472"
     CDS             complement(21556..22467)
                     /locus_tag="OQQ72_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS2011251.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLSNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            22781..23552
                     /locus_tag="OQQ72_001473"
                     /pseudo
     CDS             22781..23552
                     /locus_tag="OQQ72_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
     gene            23572..24510
                     /locus_tag="OQQ72_001474"
     CDS             23572..24510
                     /locus_tag="OQQ72_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCS2011252.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            24566..25855
                     /locus_tag="OQQ72_001475"
     CDS             24566..25855
                     /locus_tag="OQQ72_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS2011253.1"
                     /translation="MSDDKFDAIVVGADVASSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYSRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            25852..26145
                     /locus_tag="OQQ72_001476"
     CDS             25852..26145
                     /locus_tag="OQQ72_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS2011254.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            26202..>27676
                     /gene="fadK"
                     /locus_tag="OQQ72_001477"
     CDS             26202..>27676
                     /gene="fadK"
                     /locus_tag="OQQ72_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="medium-chain fatty-acid--CoA ligase"
                     /protein_id="HCS2011255.1"
                     /translation="MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVV
                     DNHGATYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVS
                     VPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL
                     APATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER
                     AYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ
                     RCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY
                     GSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNV
                     FMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE
                     DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLSL"
BASE COUNT         6907 a         7001 c         6803 g         6965 t
ORIGIN      
        1 aactgatatt tattatcatt tgaaataaat ttaacttaag cgacaattat ttgtgacgtt
       61 cattgcagaa aataaaaata atattatcgt tataaattaa aatacatacc gcaattcgta
      121 taatttcagc agttgttatt tagaatgatt aactggaccg caactgaagc aagaatatca
      181 ggatgaagct taccgcctca tcctgaatgg tcattttacc agtgcgttaa tgacggtttc
      241 catcgcctgc ttatccagct cactgcgctg aatgcgttta ttggctaatg ctgtacgtaa
      301 tacgcctgcg ataacaatat gctttggttc ctgccccaga tcgcgcattt ccagcacaac
      361 tttaccgaca actctgcaca tttctcggta cagttcatcc tcttttgtcc gatttcccat
      421 tctttatacc tatttatcat gccaactatc agcatatatc aatctaacca attaaacaaa
      481 aatcaaacaa aatcagacaa ataacgcgat aaattatttt aactgtagca attgagcgat
      541 gatatattta tacaccggat gaactttcac ttatcctcac actgacaact ttggcaccag
      601 acgttgcgca aacagcgaag tttttgcgta accttttccc tggaacgtta aatctttgat
      661 aacaatttat tgtctaacaa gttgtatatt ttttgaaacg ctgtttttgt tttccttttg
      721 gattaatttc agcgtataat gcgcgccaat tgactcttga atggtttcag cactttggac
      781 tgtagaactc aacgactcaa aaacaggcac tcacgttggg ctgagacaca agcacacatt
      841 cctctgcacg ctttttcgat gtcacttatc cttagagcga ggcaccacca ctttcgtaat
      901 accggattcg ctttccggca gtgcgcccag aaagcaagtt tctcccatcc ttctcaactt
      961 aaagactaag actgtcatga aaaagaccaa aattgtttgc accatcggac cgaaaaccga
     1021 atctgaagag atgttagcta aaatgctgga cgctggcatg aacgttatgc gtctgaactt
     1081 ctctcatggt gactatgcag aacacggtca gcgcattcag aatctgcgca acgtgatgag
     1141 caaaactggt aaaaccgccg ctatcctgct tgataccaaa ggtccggaaa tccgcaccat
     1201 gaaactggaa ggcggtaacg acgtttctct gaaagctggt cagaccttta ctttcaccac
     1261 tgataaatct gttatcggca acagcgaaat ggttgcggta acgtatgaag gtttcactac
     1321 tgacctgtca gttggcaaca ccgtactggt tgacgatggt ctgatcggta tggaagttac
     1381 cgccattgaa ggtaacaaag ttatctgtaa agtgctgaac aacggtgacc tgggcgaaaa
     1441 caaaggtgtg aacctgcctg gcgtttccat tgctctgcca gcactggctg aaaaagacaa
     1501 acaggacctg atctttggtt gcgaacaagg cgtagacttt gttgctgctt cctttattcg
     1561 taagcgttct gacgttatcg aaatccgtga gcacctgaaa gcgcacggcg gcgaaaacat
     1621 ccacatcatc tccaaaatcg aaaaccagga aggcctcaac aacttcgacg aaatcctcga
     1681 agcctctgac ggcatcatgg ttgcgcgtgg cgacctgggt gtagaaatcc cggtagaaga
     1741 agttatcttc gcccagaaga tgatgatcga aaaatgtatc cgtgcacgta aagtcgttat
     1801 cactgcgacc cagatgctgg attccatgat caaaaaccca cgcccgactc gcgcagaagc
     1861 cggtgacgtt gcaaacgcca tcctcgacgg tactgatgca gtgatgctgt ctggtgaatc
     1921 cgcaaaaggt aaatacccgc tggaagcggt ttctatcatg gcgaccatct gcgaacgtac
     1981 cgaccgcgtg atgaacagcc gtctcgagtt caacaatgac aaccgtaaac tgcgcattac
     2041 cgaagcggta tgccgtggtg ccgttgaaac tgctgaaaaa ctggatgctc cgctgatcgt
     2101 ggttgctact cagggcggta aatctgctcg cgcagtacgt aaatacttcc cggatgccac
     2161 catcctggca ctgaccacca acgaaaaaac ggctcatcag ttggtactga gcaaaggcgt
     2221 tgtgccgcag ctggttaaag agatcacttc tactgatgat ttctaccgtc tgggtaaaga
     2281 actggctctg cagagcggtc tggcacacaa aggtgacgtt gtagttatgg tttctggtgc
     2341 actggtaccg agcggcacta ctaacaccgc atctgttcac gtcctgtaat attgcttttg
     2401 tgaattaatt tgtatatcga agcgccctga tgggcgcttt ttttatttaa tcgataacca
     2461 gaagcaataa aaaatcaaat cggatttcac tatataatct cactttatct aagatgaatc
     2521 cgatggaagc atcctgtttt ctctcaattt ttttatctaa aacccagcgt tcgatgcttc
     2581 tttgagcgaa cgatcaaaaa taagtgcctt cccatcaaaa aaatattctc aacataaaaa
     2641 actttgtgta atacttgtaa cgctacatgg agattaactc aatctagagg gtattaataa
     2701 tgaaagctac taaactggta ctgggcgcgg taatcctggg ttctactctg ctggcaggtt
     2761 gctccagcaa cgctaaaatc gatcagctgt cttctgacgt tcagactctg aacgctaaag
     2821 ttgaccagct gagcaacgac gtgaacgcaa tgcgttccga cgttcaggct gctaaagatg
     2881 acgcagctcg tgctaaccag cgtctggaca acatggctac taaataccgc aagtaatagt
     2941 acctgtgaag tgaaaaatgg cgcacattgt gcgccatttt ttttgtctgc tatttaccac
     3001 tactgcctcg cgcgtaacat attcccttgc tctggttcac cattctgcgc tgactctact
     3061 gaaggcgcat tgctggctgc gggagttgct ccactgctca ccgaaaccgg ataccctgcc
     3121 cgacgataca acgctttatc gactaacttc tgatctacag ccttattgtc tttaaattgc
     3181 gtaaagcctg ctggcagtgt gtatggcatt gtctgaacgt tctgctgttc ttctgccgat
     3241 agtggtcgat gtacttcaac ataacgcatc ccgttaggct ccacggaata tttcaccggt
     3301 tcgttgatca ctttcaccgg cgttcccgtc cgcacgctgg agaataaggc tttaatatcc
     3361 ggtgcattca tgcgaataca gcccgaactg acgcgtaaac cgacgctgtc cggcgcactg
     3421 gtaccatgaa tgaggtattc gccattacca tgcgcgaagc gcagtgcgta acgtcctagc
     3481 gggttatttg gtccggcagg aacgactggc agtaatttaa tgccacgctc cagcgaacgt
     3541 tgacgaatgc ctgccgtagg cgtccaggtt ggattaggga ttttctgccc cacacgcgtt
     3601 tccatcaccg gcgtttccag cccctgcaag ccaataccta tcggataaac ctgcacgata
     3661 ttttctcccg gcggataata ataaaggcgc agctctgcaa ggttaacgat aatcccctga
     3721 cgcggtgcat caggtaataa cagttgtgaa ggaatagtta tcgtcgtacc aggttttggc
     3781 accggggcga tagtgttatt ggcttcaagg atcaacattg ccgcagtatc aaaacgtcgg
     3841 gcaatagcct gaaggttttt atccccttct tgcaccgtat acgtttgatt ttgcccaacc
     3901 agtcggcttc cggttggtgg tagcggataa tcaaccgccc aggcagcctg gatggcgcta
     3961 aaagcgccga taagcgtgag tgtaagcaaa gacgcgcgtt tcattgtaaa cctcctgtat
     4021 ttgccggaga ctcacgctga aacgtcggat ggcgcttatg ttcacctgaa accaaaacac
     4081 tcctgtgcag gtcagtgtaa acattgacca tccggcaatg tgagccaacc ggatgaaagc
     4141 tgtcccttta gtttagctaa gtgcagcggc tttggcgcga attgcgcgaa tcatcgcttc
     4201 cagaccttgt gaacgagatg gggtgagatg ttgggtgagc gccatttttt caaaccacgg
     4261 acgcacatcg aaattgacaa tatcctgcgg cgtcatctga tcgtagagaa taaatacgac
     4321 cgcaataagc cctttcacaa tcgccgcatc gctgtcgccc tgcaattcaa taattccctg
     4381 cgcattctgg cgcatgacaa tccacacctg attctggcag ccctgaatgc tattttgtgg
     4441 gcttcggtct tcgtcgcgta attctggcag acgctggccc agctcaataa tgtagagata
     4501 tttctcttcc cagttggcgc agcgtaaaaa attacgcagc aatttttctt tatccggcaa
     4561 taaagccata gtgcctccct gttatcccag cagacggtga atacgttgca ggccggtcac
     4621 cagacgatcc acttcttcat gagtgttata catggccagc gacgcccgac acatcgcagg
     4681 gacgttgtaa taggccatta atggcatagc gcagtgatgt ccggtacgca cagcaatgcc
     4741 gtaattatcg agaaaactgc caacatcata ggcgtggtgt ttaccgagat taaaagcaat
     4801 aacgccaagc ctgttttgtg ggccatagag agtgagattc ggtacagatt ccagctgtga
     4861 tagcgcgtaa tgcatcagat tcagttcata ctcggctatg ttattaagcc ccagcaccga
     4921 aacatattcc agcgccgcgc caagaccaat gatgcccccg gtattgggtg taccggcttc
     4981 aaaccgccat ggtgctttgg tccaggtagt gccttcactc aggctgacgg tggcgatcat
     5041 agaaccgccc ccttcccacg gcggcatctc ctgcaacaag gcttctttga cataaagaat
     5101 gccaatcccg gtggggccat acagtttatg cccggaaaac acgtaaaaat cgcaatccag
     5161 cgcctgaaca tccaccggat gatgcatcac cgcctgagcg ccatccacca gcacttttgc
     5221 gccatgctgg tgcgcaagcg tgatcattcc cgccagtgga ttttctgtgc caagcacgtt
     5281 ggagacatga gtaattgcca gcaggcgagt tttctcatca aacagcgtat gcagcgtctc
     5341 cagttgcagc gtaccgtcgg ggttgagagg gatcacacgc agctctgcgc caacgcgtgc
     5401 gcaaagcatc tgccagggga caatgttagc gtggtgctcc atctgactga tgatgatgtt
     5461 atcgcccgcc cgcacattgc tgttgcccca gctattggcg accagattga tcccttccgt
     5521 cgtgccgcgg acgaacacca gctcttccgc cgaacgggca ttaataaaca gcgatgcccg
     5581 cttgcgcacg ttctccattt tctcggtcgc ctgggcgctt aaggtatgaa taccgcgatg
     5641 caccgccgcg tagccatgac gataaaactc ggcctcggcg tcaatcacct ggctcggttt
     5701 ctgtgcactg gcggcgctgt cgagataagc cagcggcaaa ccgtttacct cacgcgaaag
     5761 caccggaaag tcggcccgca ctttgtcgac ggaaaaagtc atcttgcacc tcctggcagc
     5821 cgttgaccga ttcgggccag cacctgctgt ttaagcccct catcacgcag tgcttccgtc
     5881 agttcggcag caaaggcgta aatgatcatc tgctgggcat cctgctgatt gatcccgcgc
     5941 gagcgcagat agaacatctg ttcatcatca atacgcccca ccgtcgcgcc gtggctgcat
     6001 ttcacatcat ctgcatagat ttccagctgc ggtttcgtat ccacttccgc cagtttgccc
     6061 atcagcagat tattgttggt catctgacca tccgttttga tggcgtgctg cgcgacgttg
     6121 atcaaaccgt taaataccgc gcggcctttg tcgctgacga tagttttgtg caactgtcgg
     6181 ctgttacaaa aacctttatt gtgttccagc caggtacggg tatcacacac ctcgtttttc
     6241 accggcatcg ccaggctatt gatccgcagc gtgctgtttt cgccattgag ttgcgtactg
     6301 gtgttgtgtc gtaacactgc gccacccagc aggaaactat ggctaaatgc ggtggcatcc
     6361 tcagccagca acaaatcgtt atgagcaaag tggtgactga gcgggttttc aaacgccagc
     6421 ttgatatgct gcaagtgggc gttcgctgcg acattgatag tgaaccgtgc cccggtaaaa
     6481 tgacgagcat cattaaggct gacaaaatgt tcgatcaccg ttgcttcggc accttccgcc
     6541 agatccagat gatgccggta atgggcagtg ttcacctctt cacctgccac gccctgggtg
     6601 atatacatta acagcaatgg ctttgccggc cgttgaccgc gcttcacggc gatatgcgtc
     6661 acgctttgtg ccaggctttc cgtcaaatgc agaaacactt ccgcctgaat agcgtcgggt
     6721 aacccctgac ggtcgtcgtt aatgctcact tcatatccgc tgccttcaat tgcatcgctc
     6781 agcgcgggca cgtaacgtcc atcgacaaac accagccgca cggcgtctaa cgttaacgct
     6841 aaggcatcac gctgctgtgg ggatatctcc cccgcaatgc tgacaaactg gctattggtc
     6901 agcccttcca gcgacgtata tttccagttt tcatgtttac gtgtcggcag tccggtacgc
     6961 agcaattgtt gtaaatgctg ctgtgcttgc ggggagcgtt ttgtcccttc agcttcaaac
     7021 aagtgatgcc actgttgcag cgcgttactg ctgttcggta agccagccat aaccctgctc
     7081 ctccagttgt ttgaccaacg tgaaatcgcc ggatttcaca attcgtccct gatatagcac
     7141 atggacgtaa tcaggcttga tgtagtcgag aatgcgttgg tagtgcgtaa caatgatgaa
     7201 tgagcgcttg ccatcacgca gggagttcac gccatcggcg accactttta atgcgtcaat
     7261 atccagcccg gagtccgact catcaagaat gcataactcc ggttccagca ccgccatttg
     7321 caaaatatcg ttgcgctttt tctcgccgcc ggaaaaacca acgtttaccg aacgggttaa
     7381 taaatcttcc ggcatcttca ggagagcgat tttctcttcc atcaaatcct gaaaatcaaa
     7441 gcggtcgagc gtttcctggc cgcgatagct gcgcactgca ttaagtgccg tttgcaggaa
     7501 aaactggtta ctgacgcctg gaatctccac cggatactgg aaggccataa agatgccttc
     7561 gcctgcacga tcttccggcg acagtgcaag caaatctttg cctttgaact caaccgtgcc
     7621 gcccgtcact tcataatctt cgcgcccggc aagcgttgcc gataaggtac ttttgcccga
     7681 accgtttggc cccataatgg cgtgaacttc gccgggacga acggcgaggc ttaatccacg
     7741 caggatagct ttatcttcca cgctgacgtg taaatcttta atacttaaca tgtttattcc
     7801 ttatccgacg ctgtgttcaa gactgatcgc gaggagtttt tgtgcttcaa cggcaaattc
     7861 cagcggcagt tctgagaaca cgtctttgca gaaaccgtta acaatcatcg agatggcgtc
     7921 ttcttcgctg atcccgcgtt gcaggcagta aaacagttga tcttcaccaa tacgtgatgt
     7981 cgttgcctcg tgctccagtt gtgcgctgtt attgcgacat tcgacatacg ggaaggtatg
     8041 cgccccacaa ttagcgccaa tcagcattga gtcgcactga gtgaaattgc gcgcattggt
     8101 tgccgtcggc atgattttca ctaagccgcg ataactgttc tgactatgtc cggcagagat
     8161 ccctttcgag ataatggtcg atttggtgtt tttaccgatg tggatcatct tggtgccggt
     8221 atccgcttgc tgatgaccgc tggtcagcgc cactgagtaa aactcaccaa tggagttatc
     8281 gccgcgcaaa atgcagctgg gatatttcca cgtaatcgcg gacccggttt ctgattgcgt
     8341 ccatgacatt ttgctgtttt cgccttcgca caaagcacgc ttggtgacga agttgagaat
     8401 accgccggtg ttgttatcgc cagggaacca gttttgtacc gtggaatatt tcacctcggc
     8461 gtttttatgg atgatgactt ccaccactgc cgcgtgtaac tgatagctgt cacgcaccgg
     8521 agcggaacag ccttcaatgt agctgacgta gctgtcttcg tcggccacca gaatggtgcg
     8581 ctcaaactgc ccggtttttt ccgcgttaat gcgaaaatag gtggaaagtt ccatcgggca
     8641 gcgcacgcct ttaggcacat aaataaacgt accgtcagag gctaccgccg cattaagcgc
     8701 ggcaaagaag ttgtcattcc ccggcaccac ggtgccgaga tatttacgca ccagttccgg
     8761 gtgatcgtgg atcgcctcac caaaggaaca gaaaataatt ccctgctccg ccagtttttc
     8821 gcgataagta gtggcaaccg aaacagagtc gaaaatggca tccaccgcca cctctttgcc
     8881 ttcccgcacg ggaacgccca actgctcaaa cgccgcctcc acctctttac ttaaaaaggc
     8941 gttcgcgcca gtttgctgca ccgcgccagg ttcagacgcg caagtgtcgt cacaattacc
     9001 gcacgatggt gctgagtagt agctgtaatc ctgataattc agcttgtcgt agtgcgcttt
     9061 caaccagtgc ggttcttcca tctccagcca tgcgcgatag gcgtttagac gaaactccag
     9121 catccactcc ggctcattac gcttcgccga aattgcgcgc accacctctt cgtttatccc
     9181 ctttgccagc tcatcggtgg ctaactgggt gaagaatcct tctttataat tcagcgggcc
     9241 gccggtccag gttttgacat cgtcagttgc ttcagtatta cgagacatag taccgcctat
     9301 accccaaagc tttcgccaca gccacattca ttctgggctt tagggttgtg aaatttgaat
     9361 atctgattaa gtccttcacg aacgaaatcg acttccgtgc catcaataaa cggcatcgct
     9421 tgcagcggga caaacagctt cgcgccgtcg tgttcaaaca gcagatcgtc tttgtccggc
     9481 tcgctaacac tgtcgagcac atagccaaag cccgcgcagc ccgtttgctt cacgcctaaa
     9541 cgcacgccga ccatacccgg ctgctttgcc accagctcac ggatgtgtat cgccgctgcg
     9601 ggtgtcagcg ttaagccttg ccaggcgaaa tcttgtgggt taaaggttcc tgaatgcatg
     9661 tccatcgatt tacctcactt catcgctttc agcgtataac agcatgttgg tgataatgat
     9721 tatcagttca acccagcaaa cgcaggggct ttaccgtaaa acatgctttt tgcctgcttt
     9781 taataagcat agaccctgat gtgtgggtta acaggcacgc taagaattag cgtatctcat
     9841 tgttagataa tggttattat ctaaggagca ttaaggctgt gatgaaaaag aaaaagttgt
     9901 attaaaatga ctatttaaga gataggtaaa aaagtgcagc gttcagaaat aagaaaaccc
     9961 ttaagtctgt gcgacacagg cttaagggtt tctaccccat ccggcgctta tctccggcac
    10021 tctcagtggc ttagctcttg aaggggcgat aagaataatc tcataaagct aacccgccgt
    10081 tttaacacaa actgcgatta gtattatttt tgaacaatat caggcggtag ataagcagta
    10141 ttaagaaggt catcgaacct ggacggaggt taatccaggt cgatttggcg aacttgcggc
    10201 attaagtcag gatcaatgca cgcccagacg ccaggcaaag tagatttctt cttttaattc
    10261 agcagaagag agagtaagca ggtcagcaaa ttcaagttct agttgtttca gacgtttgag
    10321 atattgggca ggtgaaagat tgctctggtc acggcgtaaa aattcaatgg ccagctgggt
    10381 gggatcaagt tgagtagaca tagcatcctc gcttttagac aagacgtgta cagtatacca
    10441 ccgtttactg tgcagataat gaccaaaagc aatatgcgtc acacttttct ggtgacaacg
    10501 tcacaaaatg gcggtcgtca atcgtgacga acagcacaaa cgccctttct catcgaagat
    10561 ttcaatctgc cagacctggt gacgcgaacc gagatgcaac ggtttacata tgccgcgcac
    10621 ccgcccttct cgtgccgagc ggacgtgatt agcattgatt tccagaccaa ccactttttg
    10681 ctcaccttcg gtacataaat aaccggcaac ggaaccgata ctttcggcca gtaccacgga
    10741 tgctcctcca tgcagcaacc cgaaaggctg ctttgtccgc gagtctactg gcattgtcgc
    10801 ttcaagggtg tcatcaccaa tatgttcaaa gcgaatatcc aggaacccca ccatgtttcc
    10861 ttcacccata gcattcagtg cttccagggt gattttccgt ttccatatca tttaataatc
    10921 tccagtaaag cctgcacagg atggcgtacc cccgtgcctt caacccgttt tacctggcta
    10981 cggcaggaat atccggtcgc cagacagcgg ttacgcggca gtcgctgcat agcctgatgc
    11041 caggataact catagatccc gagcgaattt tcatggtttt tcgcttcatg tccgtaagtc
    11101 cctgccatgc cgcagcaacc cacgctgaca ttttccagtt tcgcgccaaa acgggcaaat
    11161 atcgcggccc attgtgctgg cgcacccggc aaggcggtaa cttcggtaca gtgaccaaag
    11221 aaataccatg attcaccgct gactgtagcc acaggctgtg actcaagtgc gcttgccagc
    11281 cattcattcg ccagtaagac gttaaactcg ccacgctcct cgcccagcgc cagtttatat
    11341 tcatcgcgat aacaaagtac cagcgccgga tcgacgccca ccattggcat acccagcttc
    11401 gccatacggt tgaggaaatc cgccgtcttt ttcgccgtct tcgcaaaacg attaagaaaa
    11461 cctttaatat gctgggcttt gccatttggc gaaaatggca gtaacacagg ctggaaacct
    11521 aatttttcga ccagacggac aaaatccgcc accacttgcg catcgtaata gctggtaaag
    11581 gggtcctgca ccaccaacac tgtgcgcgct ttctgctctg cattgagaga ttcaagctgt
    11641 tccagcgtca tgtttgccga gcgatgcccc accatttgtt gttgtagcga ggggaccgac
    11701 agcagcggca aatcaaccat gccgatatgt ttttccgaga gtttgcgcac cagcggctgg
    11761 ttaatgaaga agttaaaggt tttcggcgcg cgtgccatca gcggcgcgta gctctcgacc
    11821 gtagcgacga ggtggtcgcg cagcgggcgt aaataacggg tgtgatagag ctgcagaaaa
    11881 cgagagcgaa actccggcac atcaattttg atggggcaca gggtcgaaca cgctttacag
    11941 gccagacagc ccgacatcgc ctctttgact tcgtgtgaga agtcatattc gcctttattc
    12001 gcatgccagc tattgcgcgt gcgggcaatt aacgtccgca aactgacgcc ggattcaggc
    12061 agttcttgtt ccagtttgag tggatcaacg ccgcgatccg ccaacaaacg cagccattca
    12121 cgcaccagcg ttgcgcgccc tttcggtgaa tgaatccggt tctgggtgat cttcatcgac
    12181 ggacacatcg gactacgggc atcaaagttg aagcataaac cgttgccgtt acactccatc
    12241 gcaccgcgcc actgctggcg taccgcaatg gggatctgcc gatcgaatgt accgcgcttc
    12301 accgcgtcca ctttcatcat cggcgcatcg agaccttctg gcgggcaaat cttccctggg
    12361 ttgagtcggt tatgcgggtc aaatgccgct ttcactttgc gcagttctgc aaaaagttcc
    12421 tcaccgaaaa acgccgggct gtattcagcg cgaaaacctt tgccgtgctc gccccacaac
    12481 aaaccaccgt atttcgcagt cagcgccacc acgtcatcag agatttgctt catcaaaatc
    12541 tcttgttgag gatcgcacat atccagctct ggacggacgt gcaagacacc tgcgtcgacg
    12601 tgaccgaaca taccgtagct taagccgtgg ctgtcgagca gcgcgcgaaa ttcagcaata
    12661 taatccgcca ggtgttccgg cggtacgcag gtatcctcag caaacggaat tggcttagcg
    12721 gcacctttgg cattgccaag cagaccaacg gcttttttgc gcattgcata gatacgttca
    12781 acccccgcca gctcacggca cacctgccag ccgatgacac ctgcttgatg actggcgatc
    12841 agctcatcca accgcgcaca gagtgcattt acccgctcat caatcagcgc ctcatcatca
    12901 ccagcaaatt ccacaatgtt cagcccgagc atctcttggt caggcacatc ggtaatcaac
    12961 tcgctgacgg aatgccagac aatatcttcc cgcgccagat tcagcacttt tgagtccacc
    13021 gtctctaccg aaagcgcccg cgcctcaacc ataaacggcg cgttacgcag cgcagagtca
    13081 aaagagtcat atttgacgtt caccagacgg cgcactttag gcaagcgcgt aatatccagc
    13141 cgcgcttcgg taataaaggc cagcgtccct tctgaacccg tcagaatgcg cgtcaggtcg
    13201 aactcggtca tctcatcgtt aaagacatga cgcagatcgt aaccggtaag aaagcggtta
    13261 agtttgggga agttgtcgat aattaactgg cgttgctgac ggcaacgttg ataaaccgtg
    13321 ttataaattc gcccgattgt ggtattggat ttacccagcg tttccgccaa ttcgacgggt
    13381 aaaggttgcg tatcgagaac atcgcccccc aacaacaccg cgcgtacgcc aagtacgtga
    13441 tctgacgttt tgccatagac cagcgatccc tgaccggatg catcggtatt gatcatccca
    13501 ccgagcgttg cccggttgct ggtcgaaagt tccggcgcaa aaaagtagcc gaacggtttc
    13561 aggtactgat tgagttgatc ttttatcacc ccggcctcaa cgcgcaccca gccctcttca
    13621 gggttaattt cgatgatgcg gttcatatgg cgggacatat caacaataat cccctggttg
    13681 agcgcctgac cgttagtgcc ggtgccgccg ccgcgggggg taaagatcag cgatgaatag
    13741 cgttcctgcg cggcaagacg ggcgatcagc gccacatctg cggttgaacg cggaaatacc
    13801 accgcatcgg ggagaagttg gtaaatactg ttgtcggtcg acattgtcag acgatcggca
    13861 taacttgtcg ccgtatcgcc ggtaaaacct tgttgctcca gctcttgcaa aaaattaagc
    13921 accagttgaa cgacgccggg tgcctgagaa atctgtggaa tcattatatt gcccctttcc
    13981 tgcggtctgt gatgtaggtc gatacactat tctttcaggc ggctgcaata gcgcactgaa
    14041 aggtgatgtt tatttactct atggatttcg agttgcagga aggcggcaag cgagtgaact
    14101 ccaggagctt acaatagtaa gtgactgggg tgaacgaacg tagccgcagc acatgcaact
    14161 tgaaatacga cgagtaaatc gtttgcgtgt tgcctgagtt gttgtaccac atttttttct
    14221 aacacgccca tcagaattaa gggcagaatc ggcctgttaa aaaccgctga aattgctcat
    14281 cattatgcag gtgagtttcg cgtgttcacg tcgcgtcgac gatttgacgc acaaaaaagg
    14341 tgaaaagtag ttatggtaaa tgttcgtcag cccagggatg tcgcacaaat tctgctttcg
    14401 gtgctgtttt tagccatcat gattgtggca tgtctgtgga ttgttcaacc ctttattctc
    14461 ggctttgcat gggccggtac ggtggttatc gccacctggc cggtattgtt acgtttgcaa
    14521 aagatcatgt ttggccgccg ctctctcgcc gttctggtga tgacgctgtt attagtgatg
    14581 gtgtttatca tccctattgc tttgctggtt aacagtatcg tcgacggcag cggcccgcta
    14641 attaaagcca tttccagcgg cgacatgacg ttacccgatc tggcgtggct taataccatt
    14701 ccggtgattg gcgcgaagct gtatgcaggc tggcacaact tgctggatat gggggggacg
    14761 gcgatcatgg cgaaagtccg cccttatatt ggcaccacca ccacctggtt cgttgggcag
    14821 gcggcgcata tcgggcgctt tatggtgcat tgtgcgctga tgcttctctt cagtgccctg
    14881 ctgtactggc gcggtgaaca ggtggcacaa ggcattcgcc attttgcaac ccgtctggca
    14941 ggcgttcgcg gagatgccgc cgtactgctg gcggcacagg ctatccgcgc ggtggcgctg
    15001 ggtgtggtgg tgacggcgtt agtacaggca gtgcttggcg gtatcggcct cgccgtatcc
    15061 ggcgtacctt atgcaacgtt gctaacggtg ttaatgatcc tctcctgcct tgtccagctt
    15121 ggcccgttgc cggtactgat tccggcgatt atctggctct actggactgg cgataccacc
    15181 tggggaacgg tattgttagt gtggagcggt gtggttggca cgctggataa cgtcatccgc
    15241 ccaatgttaa ttcgcatggg tgccgattta ccgctgatcc tgatcctctc tggtgttatt
    15301 ggtggtttga ttgctttcgg gatgatcggt ctgtttattg gtccggttct gttagccgtt
    15361 tcctggcgtc tgtttgccgc gtgggtggaa gaagtcccgc cgccgacgga ccaaccggaa
    15421 gaaattctcg aagaacttgg cgaaatcgag aaaccgaata agtaatttct catcaggcgg
    15481 ctctgccgcc tgattgttaa cccccgctaa ttgatatttg cttgctcttc cccatatttt
    15541 cctgcttacc gccattcagc tggtagtacc tgtcgcaaat tctttacagt ttttaaacta
    15601 atgagacgaa tctgatcgac gcaaaaagtc cgtatgccta ctattagctc acggttataa
    15661 atcaacatat tgatttataa gcatggaaat cccctgagtg aaacaacgaa ttgctgtgtg
    15721 tagtctttgc ccatctccca cgatgggctt tttttaacat ttttccactt cgctacctcg
    15781 cccctcactc tttccaataa tgttgcacaa gatactgtga ctctcttcaa gccgtcagca
    15841 ggctgataat gttatttata ttttattgtt tatttcatgc agccattaca cgatgaacgc
    15901 ttatgaactc caggcactcc gacatatttt tgccatgact attgatgaat gcgcacctgg
    15961 attgcccaga ccggtgacag tgaaagctgg cgtcagtggg aaaatggcaa gtgtgccatt
    16021 cctgatcgtg tagtcgagca actgttggct atgcgtcagc aaagaaaaaa acatcttcat
    16081 gccatcatag agaaaataaa taaccgcatc ggcaacaaca ccatgcgttt tttccccgac
    16141 ttaaccgcat ttcaacgagt ctaccctgat ggcaatttta ttgactggaa gatctatcaa
    16201 tcggtagccg ctgaaggtaa tgctgttgaa aagcaaattc cccagccagt tggtggacgc
    16261 cagcgtagct aatgaattac cgcaaatgaa cagcaaaccg ttagtctggc tggaaggtgt
    16321 ttcatcggta ctgttcggtg tagccgcatt ctcgaccttt tatgtgattg tggtgtggat
    16381 gcccaaatat gcgatggctt ttgctggtat gtcagaagct gaggcattaa aaaccatctc
    16441 ttattacagt atgggctcgt tggtctgtgt ctttattttt gccgcactac tgaaaaaaat
    16501 ggtccggccc atctgggcta atgtatttaa ctctgcactg gcaacaataa cagcagccat
    16561 tatctatctg tacccttctc cactggtgtg taatgccggc gcctttgtta tcggtttctc
    16621 agcagctggc ggcattttac agctcggtgt ttcggtcatg tcagagtttt tcccaaaaag
    16681 caaagccaaa gtcaccagta tttatatgat gatgggtgga ctggctaact ttgttattcc
    16741 gctgattacc ggttatctgt cgaacatcgg ccttcaatat atcattgttc tcgattttac
    16801 tttcgcgctg ctggccctga ttaccgcaat tattgttttt atccgctatt accgcgtttt
    16861 tattattcct gagaatgatg tgcggtttgg cgagcgtaaa tttagcaccc ggttaaacac
    16921 aattaagcat agaggttaaa ggagttaatt atggatgtta ccgcaaaata cgaattgatt
    16981 gggctgatgg cctatcctat ccgccacagt ttatcgcctg aaatgcagaa taaagcctta
    17041 gaaaaagcgg gattgccatt tacctatatg gcctttgaag tggataacga tagttttccc
    17101 ggagcaattg aaggattaaa agctctaaaa atgcgcggaa ctggtgtatc aatgccgaac
    17161 aaacaactgg cttgttaata tgttgatgaa ttaacgccag cagccaaact ggtgggtgcc
    17221 atcaacacca tcgttaatga tgatggctac ctgcgcggct ataacaccga cggcacgggc
    17281 catattcgcg ccattaaaga gagcggtttt gatatcaaag gcaaaacaat ggtgctgtta
    17341 ggggccggag gtgcctcaac ggctattggc gcgcaggggg caattgaagg tttaaaagaa
    17401 attaaactct ttaaccgtcg ggatgagttc ttcgataaag ccctcgcctt cgcgcagcgg
    17461 gttaacgaaa acaccgattg tgtcgtcacg gttaccgatc tcgccgatca gcaagccttt
    17521 gctgaagccc tggcttccgc cgacatttta accaatggca caaaagtggg tatgaaaccc
    17581 cttgagaatg aatcattagt taatgatatc agtctgttac atccgggact tctggtcact
    17641 gaatgcgtgt ataacccgca tatgacgaag ttattgcagc aggcgcaaca agctggttgc
    17701 aaaacgattg atggatacgg catgttgttg tggcaagggg ctgaacagtt cacgttatgg
    17761 actggcaaag atttccctct ggaatatgtt aaacaggtca tggggttcgg tgcctgacag
    17821 gctgaccgcg tgcagaaagg gtaaaaaaat gaaaaccgta actgtaaaag atctcgtcat
    17881 tggtacgggc gcacctaaaa tcatcgtctc gctgatggcg aaagatatcg cccgcgtgaa
    17941 atccgaagct ctcgcctatc gtgaagcgga ctttgatatt ctggaatggc gtgtggacca
    18001 ctttgccgac ctctccaatg tggagtctgt catggcggcg gcaaaaattc tccgcgaaac
    18061 catgccagaa aaaccgctgc tgtttacctt ccgcagtgcc aaagaaggcg gcgagcaggc
    18121 gatttccacc gaggcttata ttgctctcaa tcgtgcagcc atcgacagcg gcctggttga
    18181 tatgatagat ctggagttat ttaccggcga tgatcaggtt aaagaaaccg tcgcctgcgc
    18241 ccacgcgcat gatgtgaaag ttgtcatgtc caaccatgac ttccataaaa cgccggaagc
    18301 cgaagaaatc attgcccgtc tgcgcaaaat gcagtccttc gacgccgata ttcctaagat
    18361 tgcgctgatg ccgcaaagta ccagcgatgt gctgacgttg cttgccgcga ccctggagat
    18421 gcaggagcag tatgccgatc gtccaatcat cacaatgtca atggcaaaaa ctggcgtaat
    18481 ttctcgtctg gctggtgaag tatttggctc ggcggcaact tttggtgcgg taaaaaaagc
    18541 ctctgcgcca gggcaaatct cggtaaatga tttacgcaca gtattaacta ttttacatca
    18601 ggcataagca ataatatttc ggcgggaata tcctcccccg ccgaactaaa aaaaatatat
    18661 tcaaccgtat ttaataaaaa tatttcgtga gtctctgtgc gctaaatatc catctggcgt
    18721 agggaaaatc acacctgaat cagaaattaa caatgaaacc tgtaaaacca cctcgtatta
    18781 atggacgagt gccggtcctg tcggcacagg aagcggtgaa ttatattccc gacgaagcaa
    18841 cactttgtgt gttaggcgct ggcggcggta ttctggaagc cacgacgtta attactgctc
    18901 ttgctgataa atataaacag actcaaacgc cacgtaattt atcgattatt agtccaacag
    18961 ggcttggcga tcgcgccgac cgtggtatta gtccgctggc gcaagaaggt ctggtgaaat
    19021 gggcattatg tggtcactgg ggacaatcgc cgcgtatttc tgaactcgca gaacaaaata
    19081 aaattattgc ttataactat ccacaaggtg tacttacaca aaccttacgc gccgccgcag
    19141 cccaccagcc tggtattatt agtgatattg gcatcgggac atttgtcgat ccacgccagc
    19201 aaggcggcaa actgaatgaa gtcacgaaag aagacctgat taaactggtc gagtttgata
    19261 acaaagaata tctctattac aaagcgattg cgccagatat cgccttcatt cgcgctacca
    19321 cctgcgacag tgaaggctac gccacttttg aagatgaggt gatgtatctc gacgcattgg
    19381 ttattgccca ggcggtgcac aataacggcg gtattgtgat gatgcaggtg cagaaaatgg
    19441 ttaagaaagc cacgctgcat cctaaatctg tccgtattcc gggttatctg gtggatattg
    19501 tggtggtcga tccggatcaa agccaactgt atggcggtgc gccggttaac cgctttattt
    19561 ctggtgactt cacccttgat gacagcacca aacttagcct gcccctaaac caacgtaaat
    19621 tagttgcgag gcgtgcatta ttcgaaatgc gtaaaggcgc ggtggggaat gtcggcgtcg
    19681 gtattgctga cggtattggc ctggtcgccc gggaagaagg ttgtgctgat gactttattc
    19741 tgacggtaga aacaggtccg attggcggaa ttacttcaca ggggatcgcc tttggcgcga
    19801 acgtgaatac ccgtgccatt ctggatatga cgtcccagtt taatttttat cacggtggtg
    19861 gtctggatgt ttgttatttg agttttgctg aagtcgacca gcacggtaac gtcggcgtgc
    19921 ataaattcaa tggcaaaatc atgggtaccg gtggatttat tgatatcagt gccacctcga
    19981 agaaaattat tttctgcggc acgttaaccg cgggcagttt aaaaacagaa attgccgatg
    20041 gcaaattaaa tatcgtccag gaagaacggg tgaagaaatt tattcaggaa ctaccggaaa
    20101 ttacttttag cggaaaaatc gcgctcgaac gggaactgga tgttcgttac atcaccgaac
    20161 gtgctgtatt cacgctgaaa gaagacggcc tgcatttaat cgaaatcgcc cctggcgtcg
    20221 atttacaaaa agatattctc gacaaaatgg atttcacccc agtgatttcg ccagaactca
    20281 aactgatgga cgaaagatta tttatcgatg cggcgatggg ttttgtcctg cctgaagcgg
    20341 ctcattaaca ggagtatcac gatggatttt tctttaactg aagaacaaga actgctgctg
    20401 gccagtattc gcgaactgat tacgactaac tttgcggaag agtatttccg cacctgcgat
    20461 caaaacggga catatccgcg tgagtttatg cgggcgctgg cggataacgg catttctatg
    20521 cttggcgtgc cggaagagtt cggtggcatc cctgcggatt acgtcaccca gatgctggcg
    20581 ctgatggaag tgtcaaaatg cggtgctccg gcatttttga ttaccaacgg tcaatgtatt
    20641 cacagtatgc gccgtttcgg ttctgcagag cagctacgta aaacggcaga gagcaccctg
    20701 gaaacgggtg atcccgccta tgccctggcg ttgacggagc caggcgcagg ctcagacaac
    20761 aacagtgcca ctaccactta cacgcgtaaa aacggcaagg tttacatcaa cggacagaaa
    20821 acctttatta ccggtgcgaa agagtacccg tatatgctgg tgttggcgcg cgatccgcaa
    20881 ccgaaagatc ccaaaaaagc cttcaccctg tggtgggtcg actccagtaa gcccggcatt
    20941 aagattaacc cgctgcataa aatcggctgg catatgctca gcacctgcga agtctatctc
    21001 gacaacgtgg aggttgaaga gagcgacatg gtgggcgaag aaggaatggg tttcctcaat
    21061 gtgatgtaca actttgagat ggagcgcctg atcaacgccg cgcgcagcac cggctttgcc
    21121 gaatgcgcct ttgaagatgc cgcccgctat gccaaccaac gtatcgcttt tggtaagccc
    21181 attggtcata accagatgat ccaggaaaaa ctggcgctga tggcgattaa gatcgacaac
    21241 atgcgcaaca tggtgctgaa agtggcatgg caagccgatc agcatcagtc actgcgcacc
    21301 agcgcggcgc tggcaaaact gtattgcgca cgtaccgcaa tggaagtcat tgatgatgcg
    21361 attcaaatca tgggcggtct gggctatacc gatgaagcgc gcgtctcccg cttctggcgt
    21421 gatgtccgtt gtgaacgtat cggcggcggt acagacgaaa ttatgattta cgtagcaggt
    21481 cggcagatcc tgaaagacta tcagaacaaa taatctgcag gcggcgcagc ttcttaacaa
    21541 actgcgccgc cagatttatc caacaagact taccggttga ggaaattcag ataggatttc
    21601 ttgttccgca aaacagtttt taaattgtct acggtaatcg ctgggcgaac aaccgacatg
    21661 gcgcaaaaac agtttggcaa agtgatcgac attttcataa cccacacgcc aggagatctc
    21721 tgcctgtgat aattcagtat tagtgagtga ccattttgct tccgtcatac gccgttgaat
    21781 aacatagtta ataggggaaa tacgatactc tttggtaaat tcatggcaaa tataactgac
    21841 gctggcacga aattttttcg ataactgttc taaagtgatt ttttcgcgat aattattact
    21901 cagatagaaa agaatatctt ttatcagaac atctttttta atatacccct gctccgaacg
    21961 ataagcattt ttaaaatttt cgtagtaaag aatggctaac gtataggcaa atgcatccca
    22021 taacgaagat gtttggctat ttttactttg cggcaaaatc acacttagct cattaaataa
    22081 ggtttttatg acttcttttc cctgccccgc ggcaattacc ggacaagaat gcggttgcag
    22141 tagctgattt tcctcagccc cctgaaactg aaagccgtac agcgcacagg tacacgtcgt
    22201 tgccggatcg ttaacgtcag aggccaccgc atgcagcctg ccgcgttcta tcaccacaat
    22261 gtcatccgca tgtgcgacat ataacgaaga atcgatggta aaccttgcaa cccctttctt
    22321 gacgtaaatc aactcggttt cattgtcatg aacgtgatgt ccggactccc attttggatc
    22381 atcgctaaat gcaaaacgtg aaagccgtgg cgttttaccg gcgacaaaca gcgtttcact
    22441 ggcgttatca aaacagcgtt gatacatgac aacctcccta ttccatgagc aagcaaaaac
    22501 aatatatgcc ggataaaata cggcgtgtat tgcggttata caaccgcgtt tagcgagagc
    22561 taaacaagat tatttacact gaatgcaaga ttgtacggtc atggaataac tatattgccg
    22621 caaattgcac ttttgtttta gcgatcgcat ttttttgcaa gattgttggc aaggaaaaca
    22681 gcttgctccg tcgaaaaccc ccaccgctat cgcacactat tttcaggcca tttttacctt
    22741 ccatcggaga tggttccgta tgcgactcac aggagaaatc atgaaaataa taacctgctt
    22801 taagctggtg cctgaagaac aggacattgt tgtcactcca gaatacaccc tgaatttcga
    22861 caatgccgac gccaaaatca gccagttcga tctcaatgcc attgaagctg caagccagct
    22921 cgcaacagat gacgatgaga tagccgcgct gaccgttggc ggctcattgt tgcagaactc
    22981 gaaagtgcgc agtgcgcaaa gatgtgctat cccgcgggcc gcacagcctg tatttggtgc
    23041 aggatgcgca acttgaacat gcactgcctc tcgataccgc aaaagcgctg gcggcagcaa
    23101 ttgaaaagat cggcttcgat ttactgatct ttggtgaagg ttccggcgac ctttatgccc
    23161 agcaggttgg cttgctggtc ggagaaattc tgcaacttcc ggtgattaat gcagtgagtg
    23221 ctattcagcg tcagggtaat acactggtga ttgaacgcac gcttgaagat gatgttgaag
    23281 ttattgaact ctctgttcca gccgtgctct gcgtcacctc cgatattaac gtgccacgca
    23341 ttccttcgat gaaagccatt ctcggcgcgg gtaaaaaacc ggtaaatcag tggcaggcaa
    23401 gtgatattga ctggagccag agcgcgccac ttgctgaact ggtcggcatt cgcgtaccgc
    23461 cgcaaacaga acgtaagcac atcattatcg ataacgattc gccggaggcc attgccgagc
    23521 tggcggaaca tctgaagaaa gccctgaact gaagcctacg gagaagaaac gatgagtcaa
    23581 ttaaacagcg tctgggtctt tagcgataat cctgaacgtt atgctgaact gtttggcggc
    23641 gctcagcaat ggggccaaca ggtgtatgcc attgtacaaa ataccgacca ggcgcaggca
    23701 gttatgcctt atggtccaaa atgtatttat gttcttgagc aaaacgacgc gctgcaacgc
    23761 actgaaaatt acgccgaaag cattgctgcc ccgctgaaag ataaacaccc cgctatgttg
    23821 ctgttggccg cgacgaaacg tggtaaagct ctggcagcac ggttaagtgt gcaactgaat
    23881 gcggcgctgg tgaacgatgc cacggcggtg gatattgtcg atggtcacat ttgcgccgaa
    23941 caccggatgt atggcgggtt agcgttcgct caggaaaaga tcaacagccc gctggcgatc
    24001 attacccttg cacccggtgt tcaggaaccg tgcaccagtg atacctctca tcagtgcccg
    24061 acagaaacgg taccttatgt tgctccgcgt catgaaattc tctgtcgcga acgccgtgcg
    24121 aaagccgcaa gcagcgtgga cctgagcaaa gcaaaacgtg tggttggcgt cggtcgtggt
    24181 ctggcggcgc aggatgacct gaaaatggtc cacgaactgg cggcggtgct gaatgctgaa
    24241 gtcggctgtt cacgtccaat tgccgaaggc gagaactgga tggagcgtga acgttatatc
    24301 ggtgtctccg gcgtgttgct gaaatccgat ctctacctga cgctggggat ctccgggcag
    24361 atccagcata tggttggcgg caacggcgca aaagtgattg tcgccatcaa taaagataaa
    24421 aatgcgccaa tcttcaatta tgccgactac ggtctggtgg gcgatatcta caaagtcgtc
    24481 cctgccctga ttagccagtt gagccgctaa ttcccctttc aaccacatct cccgctgtaa
    24541 aggcagcggg aagggagcat aacgcatgtc ggatgacaaa tttgatgcca ttgtggtcgg
    24601 tgcggacgtt gctagtagcg ttgccgcact ggtcatggcg cgagccggac tggatgtcct
    24661 ggtgatagaa cgcggcgaca gtgccggatg taaaaacatg accggcgggc gtctttatgc
    24721 ccacacactt gaagcaatca ttccaggctt tgcagtatca gcgccggtag aacgcaaggt
    24781 cacacgcgag aaaatctcct tcttaaccga agaaagcgcc gttaccctcg attttcaccg
    24841 cgagcaacca gatgttccgc aacacgcatc ttataccgta ttgcgtaatc gtctggaccc
    24901 gtggttgatg gaacaagccg agcaggcggg cgcacagttt atcccgggcg ttcgcgtcga
    24961 tgcgttggtt cgtgaaggaa acaaggtcac tggcgtgcag gccggggatg atattctcca
    25021 agcgaatgtg gtggttctag ctgatggcgt aaactcgatg cttggccgct cgctgggaat
    25081 ggttcccgct tccgatccgc atcattacgc tgttggtgtt aaagaggtta ttggcctcac
    25141 accagaacag atcaacgatc gctttaatat tacgggcgag gaaggtgccg cctggctgtt
    25201 tgccggctcc ccttctgacg gcctgatggg cgggggattt ctctatacca acaaggattc
    25261 catatccttg gggctggttt gtggattggg tgatatcgcc catgcgcaaa aaagcgtgcc
    25321 gcaaatgctg gaagatttta aacaacaccc cgccattcgc ccactaatta gcggcggcaa
    25381 actgcttgaa tattccgcgc atatggtgcc agaaggcggt ctggcaatgg tgccgcagat
    25441 ggttaacgat ggcgtgatga tcgttggtga cgccgcaggc ttctgcctga atttgggttt
    25501 tacagttcgt ggcatggatt tagccattgc atcggctcag gctgccgcca caacggtgat
    25561 cgccgccaaa gaacgcgagg atttctccgc cagcagtctg gcgcaataca aacgtgagct
    25621 ggaacaaagc tgcgtcatgc gcgatatgca gcatttccgc aagatcccgg cgctgatgga
    25681 aaacccgcgc ctgtttagcc aatactcacg aatggtcgcc gacatcatga acgagatgtt
    25741 caccattgac ggcaaaccaa accagccggt acgcaaaatg atcatgggac acgcgaagaa
    25801 aattgggctg atcaacttgc tgaaagatgg cattaaggga gcaaccgcgc tatgagccag
    25861 aacgctacgg ttaacgtcga catcaaatta ggcgtcaata aattccatgt tgatgagggc
    25921 cacccgcata tcattctggc ggcaaatccc gatatcaatg aattccgtaa attaatgaaa
    25981 gcttgccctg ccggacttta taagcaggat gacgccggca acattcattt cgattccgcc
    26041 ggttgtctgg agtgcggcac ctgtcgggtg ctgtgcggca acactattct cgaacagtgg
    26101 caatatcccg caggcacctt cggtattgat tttcgctacg gctaatcatg catcccacag
    26161 gcccgcatct cgggcctgat gttctgtttc gagagtccaa aatgaaagtg acattaacgt
    26221 tcaacgaaca acgtcgtgcg gcgtatcgtc agcaagggtt atggggcgat gcttcactgg
    26281 ccgattactg gcagcagacc gctcgtgcga tgccagacaa aattgccgtg gtcgacaatc
    26341 atggtgcaac gtacacctat agcgcgctcg atcacgccgc gagctgtctg gcaaactgga
    26401 tgttagcgaa gggtattgaa tcaggcgatc gcatcgcatt tcaactgcct ggctggtgtg
    26461 aatttaccgt tatctatctt gcctgcctga aaatcggtgc ggtttccgtg ccgctgttgc
    26521 cttcctggcg ggaagcagaa ctggtgtcgg tgctcaataa gtgtcaggca aaaatgttct
    26581 ttgcaccgac gttgtttaaa caaacacgtc cggtagattt aatcctgccg ctgcaaaatc
    26641 agcttccaca actacaacaa attgtcggcg tggacaaact ggctcccgcc acctcttccc
    26701 tctcattaag tccgattatc gccgacaata cctcactgac cacggcgata acgacccacg
    26761 gcgatgaatt agctgcggtg ctgtttacct ccggaaccga gggtctgcca aagggcgtga
    26821 tgctaacgca taacaatatt ctcgccagtg agcgggctta ttgcgcgcga ctgaatctga
    26881 cctggcagga tgtctttatg atgcctgcgc cacttggtca cgcaacgggc tttctgcatg
    26941 gcgtaacggc accattctta attggcgctc gcagcgtgtt gttagatatt ttcactcctg
    27001 atgcgtgtct cgcgctgctt gagcagcagc gttgcacctg tatgctaggc gcaacgccgt
    27061 ttgtctatga tcttttgaat gtactagaga aacaacccgc ggacctttca gcgctgcgtt
    27121 tctttctttg cggcggtacc acaatcccca aaaaagtggc acgtgaatgc cagcagcgcg
    27181 gcattaaatt attaagtgtt tatggttcca cagaaagttc gccgcatgcg gtggtgaatc
    27241 tcgatgatcc tttgtcgcgc tttatgcaca ccgatggtta cgctgccgca ggtgtagaga
    27301 ttaaagtggt cgatgacgca cgcaagacct taccgccagg ttgcgaaggt gaagaagcct
    27361 cgcgtggccc caatgtgttt atggggtatt ttgatgaacc tgaattaacc gcccgtgcgc
    27421 tggacgaaga aggctggtat tgcagcggcg atctctgccg tatggatgag gctggctata
    27481 taaaaattac cggacgcaaa aaagatatta ttgtccgcgg cggcgaaaat attagcagcc
    27541 gtgaagtgga agatatttta ttgcagcatc ctaaaattca cgatgcctgt gtggttgcaa
    27601 tgcccgatga acgtttaggt gaacgatcat gcgcttatgt cgtgctgaaa gcgccgcatc
    27661 attcattatc gctgga
//
LOCUS       DAJVUY010000038        27602 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.038, whole genome shotgun sequence.
ACCESSION   DAJVUY010000038 DAJVUY010000000
VERSION     DAJVUY010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27602
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.038"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(156..686)
                     /gene="ppa"
                     /locus_tag="OQQ72_001478"
     CDS             complement(156..686)
                     /gene="ppa"
                     /locus_tag="OQQ72_001478"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HCS2011256.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            996..1952
                     /gene="ytfQ"
                     /locus_tag="OQQ72_001479"
     CDS             996..1952
                     /gene="ytfQ"
                     /locus_tag="OQQ72_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HCS2011257.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENRIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY"
     gene            2092..3594
                     /locus_tag="OQQ72_001480"
                     /pseudo
     CDS             2092..3594
                     /locus_tag="OQQ72_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026286.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
     gene            3608..4630
                     /locus_tag="OQQ72_001481"
     CDS             3608..4630
                     /locus_tag="OQQ72_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011258.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            4617..5612
                     /gene="yjfF"
                     /locus_tag="OQQ72_001482"
     CDS             4617..5612
                     /gene="yjfF"
                     /locus_tag="OQQ72_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HCS2011259.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLST
                     GLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQG
                     LIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(5645..6643)
                     /gene="fbp"
                     /locus_tag="OQQ72_001483"
     CDS             complement(5645..6643)
                     /gene="fbp"
                     /locus_tag="OQQ72_001483"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCS2011260.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            6819..8192
                     /gene="mpl"
                     /locus_tag="OQQ72_001484"
     CDS             6819..8192
                     /gene="mpl"
                     /locus_tag="OQQ72_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HCS2011261.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            complement(8275..8826)
                     /locus_tag="OQQ72_001485"
     CDS             complement(8275..8826)
                     /locus_tag="OQQ72_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HCS2011262.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            8920..10272
                     /gene="pmbA"
                     /locus_tag="OQQ72_001486"
     CDS             8920..10272
                     /gene="pmbA"
                     /locus_tag="OQQ72_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HCS2011263.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGVDCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            10456..10842
                     /gene="cybC"
                     /locus_tag="OQQ72_001487"
     CDS             10456..10842
                     /gene="cybC"
                     /locus_tag="OQQ72_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HCS2011264.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(10887..11351)
                     /gene="nrdG"
                     /locus_tag="OQQ72_001488"
     CDS             complement(10887..11351)
                     /gene="nrdG"
                     /locus_tag="OQQ72_001488"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HCS2011265.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(11541..13679)
                     /gene="nrdD"
                     /locus_tag="OQQ72_001489"
     CDS             complement(11541..13679)
                     /gene="nrdD"
                     /locus_tag="OQQ72_001489"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HCS2011266.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASISLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYSNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            complement(14073..15728)
                     /gene="treC"
                     /locus_tag="OQQ72_001490"
     CDS             complement(14073..15728)
                     /gene="treC"
                     /locus_tag="OQQ72_001490"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HCS2011267.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            complement(15778..17199)
                     /gene="treB"
                     /locus_tag="OQQ72_001491"
     CDS             complement(15778..17199)
                     /gene="treB"
                     /locus_tag="OQQ72_001491"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HCS2011268.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNARQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLITHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            complement(17300..18265)
                     /gene="treR"
                     /locus_tag="OQQ72_001492"
     CDS             complement(17300..18265)
                     /gene="treR"
                     /locus_tag="OQQ72_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HCS2011269.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            18450..18503
                     /gene="mgtL"
                     /locus_tag="OQQ72_001493"
     CDS             18450..18503
                     /gene="mgtL"
                     /locus_tag="OQQ72_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HCS2011270.1"
                     /translation="MEPDPTPLPRRRLKLFR"
     gene            18644..21340
                     /gene="mgtA"
                     /locus_tag="OQQ72_001494"
     CDS             18644..21340
                     /gene="mgtA"
                     /locus_tag="OQQ72_001494"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS2011271.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(21546..21932)
                     /gene="ridA"
                     /locus_tag="OQQ72_001495"
     CDS             complement(21546..21932)
                     /gene="ridA"
                     /locus_tag="OQQ72_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HCS2011272.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(22005..22466)
                     /gene="pyrI"
                     /locus_tag="OQQ72_001496"
     CDS             complement(22005..22466)
                     /gene="pyrI"
                     /locus_tag="OQQ72_001496"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HCS2011273.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            complement(22479..23414)
                     /gene="pyrB"
                     /locus_tag="OQQ72_001497"
     CDS             complement(22479..23414)
                     /gene="pyrB"
                     /locus_tag="OQQ72_001497"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCS2011274.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            complement(23418..23552)
                     /gene="pyrL"
                     /locus_tag="OQQ72_001498"
     CDS             complement(23418..23552)
                     /gene="pyrL"
                     /locus_tag="OQQ72_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HCS2011275.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            complement(23832..24227)
                     /locus_tag="OQQ72_001499"
     CDS             complement(23832..24227)
                     /locus_tag="OQQ72_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS2011276.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     SYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            complement(24358..25071)
                     /gene="bdcA"
                     /locus_tag="OQQ72_001500"
     CDS             complement(24358..25071)
                     /gene="bdcA"
                     /locus_tag="OQQ72_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS2011277.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTGAMHTIDGAFGA"
     gene            25142..25735
                     /locus_tag="OQQ72_001501"
     CDS             25142..25735
                     /locus_tag="OQQ72_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS2011278.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            25880..26332
                     /gene="tabA"
                     /locus_tag="OQQ72_001502"
     CDS             25880..26332
                     /gene="tabA"
                     /locus_tag="OQQ72_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin biofilm protein TabA"
                     /protein_id="HCS2011279.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            26455..27602
                     /locus_tag="OQQ72_001503"
                     /pseudo
     CDS             26455..27602
                     /locus_tag="OQQ72_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT         6618 a         6836 c         7299 g         6849 t
ORIGIN      
        1 acagcaaaat ggtggtcggg tttgcttgtt cttaccgttc aagccttgca accgctgaga
       61 ataatgatgg tggaatagag agtttattta tcgcgggcat aaaaaaaccc ttactaaccg
      121 aagcccggcg ttcagggtta ttgcgctaga agaacttatt tattctttgc gcgctcgaag
      181 gaagcaacga tttcagcttt agcggcttct gcgttttccc aaccttcaac tttcacccac
      241 ttgccttttt cgaggtcttt gtagtgctcg aagaagtgag cgatttgcgc tttcagcagt
      301 tcaggcagat cgtttacgtc tttaatgtga tcgtattctt tgctcagctt gctgtgcgga
      361 accgcaacca gtttcgcatc ttcaccggct tcgtcggtca ttttcagaac gccaaccgga
      421 cggcaacgga tcacagaacc aggctgcagc gggtacggag tcgggaccag tacgtcaacc
      481 gggtcaccgt ccagagacag ggtgtggttg atgtaaccgt agttgcacgg atagaacatc
      541 gcggtggaca tgaagcggtc aacgaacagt gcgccgctct ctttgtcgat ttcgtatttg
      601 atcggatctg cgttagccgg gatctcaata acaacgtaga tgtcttccgg cagatcttta
      661 cccgcaggga cgttgagtaa gctcatgtct gtttccttta aaaatatgtg gcaaacaagt
      721 gccgagtatt atagccaact cgcgccgaat gtctttgctt gttttcgtct tcattttcct
      781 ttttcgccag ttttaagacg gtatacagag caggaaaatc cataaccgta gccgcatttt
      841 tcatagtgag atgaaagcga ttacaaactt gtgattaacg ttttatttac ttttttgaag
      901 tgtgatgtaa cgcaatccgt tacataacga attgtctata gttttttcgc gaacatcttt
      961 tcaccaataa taattacccc gacgaggaca accctatgtg gaaacgctta cttgtagtct
     1021 ctgcagtctc ggcagccatg tcgtctatgg cgttggccgc tccattaacc gtaggatttt
     1081 cgcaggtcgg atcggaatcc ggctggcgcg ccgcagaaac caatgtggcg aaaagtgagg
     1141 ccgaaaaacg cggaattacg ttgaaaattg ccgatggtca gcaaaagcag gaaaaccgga
     1201 ttaaagcggt acgttccttc gttgcacaag gggtggatgc gatctttatc gctccagtgg
     1261 ttgcgacggg ttgggaaccg gtattaaaag aggcgaaaga tgccgaaatc ccggtcttct
     1321 tgctcgaccg ttccatcgat gtgaaagaca aatctctcta tatgaccacc gttactgccg
     1381 acaacatcct cgaaggtaag ttgatcggtg actggctggt aaaagaagtg aatggcaaac
     1441 catgcaacgt ggtggagctg cagggcaccg ttggggccag cgtcgccatt gaccgtaaga
     1501 aaggctttgc cgaagccatt aagaatgcgc caaatatcaa aattatccgc tcgcagtcag
     1561 gtgacttcac ccgcagtaaa ggcaaagaag tcatggagag ctttatcaaa gcggaaaaca
     1621 acggcaaaaa catctgcatg gtttacgccc ataacgacga catggtgatt ggtgcaattc
     1681 aggcaattaa agaagcgggc ctgaaaccgg gcaaagatat tctgacaggt tctatcgatg
     1741 gcgtaccgga tatctacaaa gcgatgattg atggcgaagc gaacgccagt gttgaactga
     1801 cgccgaatat ggcgggaccc gcttttgacg cgctggagaa atacaaaaaa gacggcacca
     1861 tgcctgaaaa gctgacgtta accaaatcca ccctttacct gcctgatacc gcaaaagaag
     1921 agttagagaa gaagaaaaat atggggtatt gagggttgct atgcctgatg ccgattcgta
     1981 ggccggataa ggcgctcgcg ccgcatccgg cgatggtgca ctgaagcctg atgcgacgct
     2041 taccgcgtct tatcatgcct actgggagca cgctttacac cgggggaaac catgacgacc
     2101 gaccaacacc aggaaatcct ccgcaccgaa ggattaagta aatttttccc cggcgtcaaa
     2161 gcgttagaca acgttgattt cagcctgcgc cgtggcgaaa tcatggcgct gctcggtgaa
     2221 aacggggcgg gaaaatcaac gctaatcaaa gcattaactg gtgtatacca cgccgatcgc
     2281 ggcaccatct ggctggaagg ccaggttatc tcaccgaaaa ataccgccca cgcgcaacaa
     2341 ctcggcattg gcaccgtcta tcaggaagtc aacctgctac ccaatatgtc ggtcgctgat
     2401 aatctattta taggccgcga acccaaacgc ttcggccttc tacgccgcaa agagatggaa
     2461 aagcgcgcca ccgaactgat ggcatcttac ggtttctccc tcgacgtgcg cgaaccgctc
     2521 aaccgctttt cagtcgcgat gcagcaaatc gtcgccattt gccgggctat cgatctctcc
     2581 gccaaagtgc tgatcctcga tgaacccacc gccagcctcg acacctagga agtggagcta
     2641 ttatttggcc tgatgcgtca gttgcgcgat cgcggcgtca gcctgatctt tgtcactcac
     2701 tttctcgatc agagctatca ggtcagcgat cggatcaccg ttttacgcaa cggcagtttc
     2761 gtaggctgtc gggaaacgcg cgagctaccg cagatcgaac tggtaaaaat gatgctgggg
     2821 cgcgagctgg atacccacgc gctacagcgt gccgggcgaa cattgttgag cgacaaaccc
     2881 gttgccgcgt tcaaaaatta cggcaaaaaa ggaacgatag caccgtttga tctcgaagtg
     2941 cgccccggcg agatcgtcgg cctggcaggc ttgctgggat ccggacgtac cgaaaccgcc
     3001 gaagtgatct tcggtatcaa acctgctgac agcggcacgg cgttgatcaa aggcaaaccg
     3061 caaaacctgc gatcgccaca tcaggcttcg gtactgggca tcggcttctg cccggaagac
     3121 aggaaaaccg atggcatcat cgctgccgcc tcggtgcggg aaaatatcat cctcgctctc
     3181 caggcccagc gcggctggct acgacctatt tcccgcaaag agcagcaaga gattgccgaa
     3241 cgctttatcc gccagcttgg cattcgcaca ccttcaactg aacaaccgat tgaatttctc
     3301 tccggcggca atcagcaaaa agtgttgctt tcacgttggc tactgacccg accgcaattt
     3361 ctgatcctcg atgagccaac ccgtggcatt gatgttggtg cccacgccga gatcatccgc
     3421 ctgattgaaa cgctatgcgc cgatggtctg gcgctgctgg tgatctcctc cgaactggaa
     3481 gaactggtgg gctatgccga ccgggtgatc atcatgcgcg atcgcaaaca ggtggcggag
     3541 atccggctgg cagagctttc cgttccggct atcatgaacg ccattgcggc gtaaggagaa
     3601 cagtgtgatg cctcaatctc ttccggacac cactacgcca aaaaggcgct ttcgctggcc
     3661 gacggggatg ccgcagctgg tagcactatt gctggtgctg ctggtcgaca gcctggtagc
     3721 cccgcatttc tggcaggtag tgcttcagga tgggcgtttg ttcggtagcc ccatagacat
     3781 tcttaaccgt gcagcccccg ttgcgttact ggcgattggt atgacgctgg tgatcgccac
     3841 cggtgggatt gatctctccg taggggcggt gatggctatc gccggagcca caacggctgc
     3901 gatgacggtc gcggaagtca gcctgccgat tgttttgtta agcgccctag gcaccggcat
     3961 cctggcggga ttgtggaacg gcatactggt agcgatcctc aaaattcagc catttgtcgc
     4021 caccctgatc ctgatggtcg ccgggcgcgg cgtggcgcaa ctgatcacct ccggacagat
     4081 cgtcacgttt aactcgccgg atctctcatg gtttggcagt ggatcgctgt tgttcctgcc
     4141 aacgccagtc attattgcgg tactgacgct tctcctgttc tggctgttga cccgcaaaac
     4201 ggcactgggg atgtttatcg aagccgttgg tatcaacatt cgggcggcaa aaaatgccgg
     4261 ggtaaacacg cggatcatcg tcatgctcac ttatgtgttg agcgggctgt gtgcggcgat
     4321 tgcgggcatt atcgtggcgg cggatattcg cggtgccgat gccaacaacg ccggattatg
     4381 gctggagctg gacgccattc tcgcggtggt gattggcggc ggatcgctga tgggcgggcg
     4441 ctttaacctg ctgctctcgg tagtgggggc gctgattatt caggggatga acaccggaat
     4501 tttgctttcg ggctttccac cggagatgaa ccaggtggtg aaagcggtgg tggtgctttg
     4561 cgtgctgatt gtccagtcgc aacgctttat cagtctgatt aaaggagtac gtagccgtga
     4621 taaaacgtaa tttgccactg atgatcacca tcggcgtctt tgtgctgggc tatttctact
     4681 gcctgacgca gtttcccggt tttgcttcca caagagtgat ctgcaatatc ctgaccgata
     4741 acgcttttct ggggattatt gccgttggta tgacctttgt gatcctctct ggcggtatcg
     4801 atctctccgt cggttcggtg atcgccttta ctggcgtgtt tctggcaaaa gtggttggcg
     4861 atttcggcct ctcgccgctg ctggcgtttc cgctagtgct ggtgatgggc tgtgccttcg
     4921 gcgcatttat ggggcttctg atcgacgccc tgaagatccc ggcatttatc attacgcttg
     4981 cggggatgtt ctttttgcgc ggcgtcagct atctcgtttc ggaagagtcg attccgataa
     5041 accatcccat ttatgacacg ctctcaagcc ttgcgtggaa aatccccggc ggcggtcgcc
     5101 ttagtgcgat ggggctgttg atgctggcgg tggtggttat cggtattttc cttgcgcatc
     5161 gtacccgttt tggcaatcag gtgtacgcta ttggcggcaa cgcgacgtcg gcgaacctga
     5221 tggggatttc tactcgcagc actactattc gcatttatat gctctccacc ggactggcaa
     5281 cactggcggg gattgtcttc tcgatttata cccaggccgg atatgcactg gcgggcgtag
     5341 gtgtggaact ggacgccatc gcgtcggtgg tgattggcgg tacgttgtta agtggtggcg
     5401 tcgggacggt gcttgggacg ctttttggcg tggcaattca gggactgatc cagacttaca
     5461 tcaactttga cggcacgctg agttcctggt ggacgaaaat cgccatcggt attttgttgt
     5521 ttatttttat agcattacag cgtgggttaa cggtgctgtg ggagaatcgt cagagttcgc
     5581 cagtgacaag agtcaacatt gcgcagcgat aaaaatgcct ctccgtgtgg agaggcgcag
     5641 gagattacgc gtccgggaac tcacggataa agcgttcgac atcttcaacc atatggtcgt
     5701 tgccgacaaa gaacgaacgg cgctggtgca gagtttccgg gatgatatcc agaatacgct
     5761 ctttgccatc gctcgcttta ccgcccgctt gttccgccag gaatgccatc gggttgcact
     5821 cataaagcaa acgcagtttg ccgtccgggt ggctggcggt gcttgggtag agataaatac
     5881 cgcctttcag caggttacgg tggaaatccg caaccagtga accgatataa cgtgaggtat
     5941 acgggcggtt ggtggattta tcttcttcct ggcagaattt aatgtacttc ttcaccccgt
     6001 tcggaaactt aatgtagttt ccttcgttga tggagtaggt tttgcctttc tccgggaagc
     6061 gcatccgttc ctggcacagg cagaaaacgc ccagcgaagg atcgtaagta aaggcgtgaa
     6121 caccgcatcc ggtggtgtaa accagcatgg tagaggagcc gtataccacg taacctgccg
     6181 caacctgttt gttaccaggc tggaggaaat cttcttccgt taccggcgtg ccgacgggcg
     6241 taactcggcg gtagatggag aaaatggtac cgacagagac gttaacatcg atgttggacg
     6301 agccatccag tgggtccatc agcaccacgt attttgcatg ttcacagcct tcaaagacaa
     6361 caatctcatc ttcttcttca gaggcaatgc ctgcaacgat atcgcgtgct ttcagtgcgg
     6421 ctttcagttt ttcattagcg aacaagtcga gtttttgctg aacctcgccc tgcacgttct
     6481 cagcaccgct ggcacccagg atatcaacca gtcctgcttt gttgatatcg cgatggataa
     6541 tcttggcgcc cagttttatt gccgacagca aagcagtgag ctcaccggta gcatgagaaa
     6601 actcgtgctg cttttcgaca ataaattcac ctaacgtttt cataaaactt tccctgcaat
     6661 gtttatggag taaagcgacc gcaacaatct taacaaataa tctcaatgtt gcgctcaggt
     6721 gaatcgcgcc agcaaattac ggattatcct gaaatgcgtt tctcacttgc ccgacatatg
     6781 cgtaaaatga gcggcagatt aaaaaaggat agtgacgtat gcgcattcat attttaggaa
     6841 tttgtggcac gtttatgggc ggtctggcga tgctggcgcg ccagttaggc catgaagtaa
     6901 cgggttcgga cgccaatgtg tatccgccga tgagcacctt acttgagaag caaggcattg
     6961 aactgattca gggttacgat gccagccagc tcgatccgca gccggatctg gtgattattg
     7021 gcaacgccat gacccgtgga aatccgtgtg tggaagcggt actggaaaaa aacatccctt
     7081 atatgtcagg tccacagtgg ctgcacgatt ttgtgctgcg cgaccgctgg gtgctggccg
     7141 ttgccggtac acacggcaaa accaccaccg cgggaatggc gacctggatt ctggaacagt
     7201 gtggttacaa accgggattt gtgatcggcg gtgtgccggg gaactttgag gtttcggcgc
     7261 gtctgggcga aagcgacttc tttgttatcg aagcggatga gtacgactgc gccttcttcg
     7321 acaaacgctc taaatttgtc cattactgcc cgcgtacgct gatcctcaac aaccttgagt
     7381 tcgatcacgc cgatatcttt gacgacctga aagcgatcca gaaacagttc caccatctgg
     7441 tgcgtatcgt tccggggcag ggccgtatta tctggccgga aaatgacatc aacctgaaac
     7501 agaccatggc gatgggctgc tggagcgagc aggagctggt gggtgagcag gggcactggc
     7561 aggcgaaaaa gctgaccact gatgcttccg aatgggaagt cttgctggat ggcgaaaaag
     7621 tgggcgaagt gaaatggtcg ctggtaggcg aacataatat gcataatggc ctgatggcga
     7681 ttgcggcggc ccgccatgtt ggcgtagcgc cggcagatac cgctaacgcg ctgggttcgt
     7741 ttattaatgc tcgtcgccgt ctggagttgc gtggtgaagc gaatggcgtc acggtatatg
     7801 acgattttgc ccatcacccg acggcgattc tggcaacgct ggcggcgctg cgtggcaaag
     7861 ttggtggtac agcgcgcatt attgctgtgc tggaaccgcg ctcgaatacc atgaaaatgg
     7921 ggatctgcaa agacgatttg gcaccttcat taggtcgtgc cgatgaagtc ttcctgctgc
     7981 aaccggcgca tattccgtgg caggtggcag aagtggcaga agcctgcgtt cagcctgcac
     8041 actggagtgg cgatgtggat acgctggcag atatggtggt gaaaaccgct cagcctggcg
     8101 accatattct ggtgatgagc aacggcggtt ttggtgggat ccatcagaaa ctgctggatg
     8161 gtctggcgaa gaaggcggaa gctgcgcagt aattcggcct cagcctgaga tagcattgcc
     8221 ggataaggcg tttacgccgc atccggcaaa ccatactcac atcaacaacg aaaattactc
     8281 ttcattctcc gccagttcgc gcagatactg gaaaatctgg cgtgcggatt tcggcggctt
     8341 attcccttct ttctctttct tcgcgttgcg gatcagagta cgcagttgct gacgatcggc
     8401 atcgggccac agatttaata cctcagcgat ggcgtcatca ccttgatcga tcagacgatc
     8461 gcgcaggttt tccagtttat ggaacagcac cacctgctgg ttgtgacggt ttttcagctt
     8521 atccagcgcc tgacggatcg gttctacatc gcgctggcgc agcatcttac cgatgagctg
     8581 caactggcgg cggcgacctt ccatcttaat acgctgggcg agctcaatag ccgcgcgcag
     8641 atccgcatct aacgggatct tatccagcgc gtttttcccc agatcaacaa tttccgcgcc
     8701 aaggcgtttt agctcctcgg catcacgttt aatttcactt ttactgaccc agataatttc
     8761 atcgtcttcg tcttcgatgt catcaccggg aacgtcgtcg agccagtctt cgggctgctt
     8821 agtcatctca ggctccttaa aaaaagaggc taatgttacc agttaagatg cgcactgaaa
     8881 aacggttctc tgttagactt cagagaaact ctctacatta tggcacttgc aatgaaagta
     8941 atctctcaag ttgaagcgca gcgcaagatt ctggaagaag cagtttccac tgcgctggag
     9001 ttggcctcag gcaaatcgga cggtgcggaa gttgccgtca gcaagaccac cggcattagc
     9061 gtaagcacgc gttatggtga agtggagaat gttgaattca atagcgatgg cgcgctgggg
     9121 atcactgttt atcaccagaa ccgcaaaggt agcgcatcat ccaccgattt aagcccgcag
     9181 gccattgccc gtactgtaca ggcggcgctg gatattgccc gttatacctc gccagatccc
     9241 tgtgccggcg tggcagacaa agagctgctg gcctttgacg caccagatct cgacttgttc
     9301 caccctgcgg aagtttcccc ggatgaagcc attgaactgg cggcccgcgc agaacaggcg
     9361 gcattgcagg cggacaaacg catcaccaat accgaaggtg gcagctttaa cagccactac
     9421 ggtgtcaaag tttttggcaa cagccacggc atgttgcagg gttactgctc aacgcgtcat
     9481 tcgctctcca gctgtgtaat tgccgaagaa aatggcgata tggagcgtga ttacgcctac
     9541 accattggtc gtgcgatgag cgatctgcaa acgccagagt gggttggggt cgactgtgct
     9601 cgccgtactt tatcgcgcct gtcaccgcgt aaactctcca ccatgaaagc gccggtcatt
     9661 tttgccaatg aagtggcaac cgggcttttt ggccatctgg tgggggcgat agcgggtgga
     9721 tcggtttacc gtaaatctac cttcctgctg gattcgctgg gtaaacaaat tctgccggac
     9781 tggctgacca ttgaagagca tccgcatctg ctgaaagggc tggcgtcgac gccattcgac
     9841 agcgaaggtg tgcgcaccga gcgtcgcgat attattaaag atggcatcct gactcagtgg
     9901 ctgctgacca gctattcggc gcgaaaactg gggctgaaaa gcaccggaca tgcgggcggt
     9961 attcacaact ggcggattgc cggacaaggt ctaagcttcg agcagatgct caaagagatg
    10021 ggcaccgggc tggtggtgac ggaattgatg ggccagggcg tgagtgcaat taccggtgat
    10081 tattcccgtg gtgcggcggg cttctgggta gaaaacggcg aaattcagta tccggttagc
    10141 gaaatcacca tcgcaggtaa tttaaaagat atgtggcgca atattgtcac cgtcggtaac
    10201 gatattgaaa cacgcagtaa tatacagtgt ggttctgtgc tgttgccgga gatgaaaatc
    10261 gccggacagt aaaaaaactg gcgcgacctg tcgcgctata aactaaaaaa ttacacaaaa
    10321 tcattcgcac tgcatcgaga cggaaagtga atgagggccg gggagcgtac tcgcagtacg
    10381 tgacccggtc gaatgagcgt agtcgtcgat gaggcagtgt gaatgatgaa gtgtaaataa
    10441 aaaaggaagt gagcaatgcg aaaaagcctg ttagctattc ttgcagtctc ctcgttggta
    10501 ttcagttcgg cgtcgtttgc cgctgatctt gaagacaata tggaaaccct caacgacaat
    10561 ttaaaagtgg tcgaaaaagc cgataacgcg gcgcaagtca aagacgcgtt aacgaagatg
    10621 cgcgccgcag cgctggatgc gcaaaaagca acgccgccga agctcgaagg caaatcaccg
    10681 gacagcccgg agatgaaaga cttccgtcac ggtttcgata ttctggtcgg tcagattgac
    10741 gacgcgctga agctggcaaa tgaaggtaaa gtaaaagaag cgcaggctgc cgcagagcaa
    10801 ctgaaaacga cccgcaacgc ctatcaccag aagtatcgtt aattcctcat ttccctgttg
    10861 cctgcactca ggtaacaggg aacttatcat cgcaaatgat gcaccacctg attgctgctg
    10921 ccgcgccaga tcagggaagg gtcttttaaa tcctgcacaa atttgccgtc gaccagcacg
    10981 ttaatcaaat caacaacctg catttgcgct gcgttgagtt cgtcgagttt atagcctgtc
    11041 cacacccaga tgtctttacc cggacactcg gcgcggatgc gttgtaccag tttcagaata
    11101 tccggcacgt tttgcggatg cagcggatcg ccgccggaga gggaaatacc ctggcgtttg
    11161 atacgagtgt cattcagatc gttaatgatc tggtcttcca ttgctttagt aaatggctga
    11221 ccggaattta cccgccatgt gcttttgtta tagcaaccgg ggcattcatg aacacacccg
    11281 gagacaaaca gagtgcaacg agtgccgggg ccgttgacga tgtcgacagg atagtactga
    11341 tgataattca ttatttcgcc tggcttatca gtccgcgtgt agactgcatc cggtaatcaa
    11401 tgcctgatgc gacgctgtcg cgtcttatca ggcctacagc cgttgccaaa tgtaggccgg
    11461 ataaggcgtt tacgccgcat ccggcaatca acgcgggatg cgacgctttc acatcacatc
    11521 cggcatttgc ttagtgcaga tcaacctatc tgcccatttc ccaaatgttt aacgcggcgc
    11581 ttaacttctt cctgcttgcc ggcgttaaac ggacgtgcat ccgggctacc taaatatccg
    11641 cacacgcggc gagttaccga cacacgggag gcgtcatggt taccacattt cgggcaggtg
    11701 aagcctttgc tggtgcactc gaactcaccg gtaaagccac actcgtagca ctcatcaatc
    11761 ggtgtattgg tgccgtaata cggtacatgc tgatagctgt aatcccagac atcttccagc
    11821 gccttcaggt tgtgctgaat gtttgaatac tcgccgtagc aaatgaaacc accgttcgcc
    11881 agcggcgggt aaggcgcttc aaagtcgatc ttgtcgtacg ggttcacctt cttctccaca
    11941 tcgaggtgga aactgttggt gtagtaacct ttatcggtca cgcccggcac cacgccaaac
    12001 tcagcagtat cgagacggca gaagcggtcg cacaggtttt cactcggcgt gctgtagaga
    12061 ctgaaaccat aacccgtttc ttccttccac tgatccactg cctgacgcag acgttcaaca
    12121 atggcgatac ctttcgcgcg aagctgctcg ttgtcgtaaa catgctcgcc gccgaacagc
    12181 gcgttaatgg tttcgtggat gccgatgtaa cccagcgaaa tagacgcacg accgtttttg
    12241 aagatttcag aaacatcatc gtcagcattg agacgcacgc cacaagcacc ttccatatag
    12301 aggatcgggg ccacgcgcgc tttcacgcct tcgagacgag cgatacgggt catcagcgcc
    12361 ttacgtgcca gcaccagacg ttcatccagc agcttccaga aggtggcttc atcgcctttt
    12421 gcttccagag caatacgcgg caggttcagg ctgatcacgc cgaggttgtt acgaccatcg
    12481 tggatctgct cgccgttttc attttcccac acgccgagga agctgcggca gcccatcgga
    12541 gttttaaacg aaccggtgac tttcactacc tgatcgtagt tcaggatatc cggatacatg
    12601 cgcttgcttg cgcactccag cgccagctgt ttgatgtcgt agttcggatc gcctttttta
    12661 tggttcaggc catcgcgaat cgcaaacacc agtttcggga acaccgcagt tttacggttt
    12721 ttaccgaggc ctgcgatacg gttacgcagg atagattcct gaatcaggcg cgactcccag
    12781 ctggtgccca gaccaaaacc aaaggttaca aacggcgtct gaccgttggc ggtgtgcagg
    12841 gtgtttactt cgtactccag cgactggaag gcatcgtagc actctttaat ggtacgagag
    12901 ttagcgtagc cttcggcgtc cgggatgttc cactcttctg cggtcttgcg atgtttgttg
    12961 tagctggcgg tgacaaacgg tgccagcact tcatcgatac ggttaatggt tgtgccgcca
    13021 taaatatggc tggcgacctg agcaataatc tgcgcagtta cagcggttgc cgtagagatc
    13081 gacttcggcg gttcaatctc ggcgttcccc atcttaaagc cctgggtcag catgcctttc
    13141 aggtcgatca acatgcagtt gaacatcggg aagaacggcg agtaatcgag atcgtgatag
    13201 tgaatatcgc cacgctcatg tgcctgcacc acgtcacgcg gcagcaggtg ctgacgtgca
    13261 tagtgtttag ccacgatccc ggccagcagg tcgcgctggg ttggaatcac cttgctgtct
    13321 ttgttggcgt tttcgttgag taacgaggcg ttggtctgct cgaccagacc acggatctcc
    13381 tgattcaggc gaccgcgttt ttcacgttca atgtcgcgat cgtgacggta ctcgatgtaa
    13441 gcacgagcca gttgtttgta tggacctgac atcagctggt tttcaacagc ggtctggatc
    13501 tcattgatat ccacctggtt gcggccctgc atctgctcgc tgacaactgc agcaacagtg
    13561 gcgcaataat cggcatcatc gacttccgct gctttagctg cacgcagaat cgcttctttg
    13621 atgcgctctg atttaaacgg cactttgcag ccgtctcgtt tcatcacatg cggtgtcatg
    13681 atcgctccat atttttaaga acaggttatc cacagaaatt gggaaaggcg ttttccggtt
    13741 ttttcgtttc gttttccggt gctttccgca atcgccatcc gcttttccac aacgccgcac
    13801 ctttttcgtg gggagctgta gtagcaatta tagtcgatta atacaacata ttgggttggg
    13861 acgcatttta aagtctatat atagtgcttt gcatcaagga tgtttgaact ttttttgatg
    13921 tagctcaaag taaaaagcag agcgtacgga tgacgggcgc tacagcgtta tgtaaatttt
    13981 ttaatgaatt tgctggttga aaaataaaca aaaacaacat gctgacagac aaaaccccgg
    14041 aatgaccggc attaccgggg cttagggaag atttacttct gtaaccacca gacagcctca
    14101 aaaggccgta aattcatggc acagggttgt ggtgaggctt cttcgtagtt atgcatcaca
    14161 agctgccagt tgccgcgcat ttgccctggc tgccagggtt ggatctcacg gctaaggttg
    14221 gcaatgacca gcaaggtttg ccccttccat tcacggcgat agcaccacaa tacagggctg
    14281 tttggcagca gatcctggta attgccccat gtcaggatgg cttcctgctt acgcagtgcg
    14341 attaactttt ggtaggtgta aaacaccgag gaatcatcgg ccagcgcggc ttctacgttg
    14401 atttgttgat agttatcacc caggccaatc cacggttcgc cagccgtaaa tccggcatta
    14461 tcgccgttgc tccattgcat gggcgtgcgg ctgttgtcac gggatttact ggcgaggatt
    14521 gccaataact cgtcggcatc acgaccatcg ttgcgcagct cggcaaacat attgaggctc
    14581 tctacgtcgc gatagtcagt aatgcgcgtg aaatgcgggt tggtcatgcc aatctcttcg
    14641 ccctggtaga tatacggcgt tccctgcatg ccatgcagca ccatcgccag catttttgcc
    14701 gcaggcacgc ggtattcacc ttcatcacca aagcgagaaa caatgcgcgg ctgatcgtgg
    14761 ttacaccaga acaaggcatt ccatgctacg ttgtgcattc cttgttgcca gtggcggaac
    14821 aatgttttca acgccacaaa gtcaggttta gccagcgtcc atttttcacc accgggataa
    14881 tcgaccttca ggtgatgaaa attaaaggtc atcgacaatt cactgcctgt cagtgccgcg
    14941 tatcgctggc aatgctcaag gctggtggag gacatttcac ctacggtcat taacccgcgt
    15001 ggcgtaaaca catcgcggtt catctcgtgc aaaaactcgt gtgctcgtgg cccgtcggtg
    15061 tagaagcgac gcccgtcgcc atccaggtca tcagggaaac gcgggtcttt ggagatcaga
    15121 ttcaccacat ccaggcgcaa cccgtcgacc ccacgatcgg cccagaactc acagactttt
    15181 ttcagcactg cgcgtaccgc tggattctcc cagttgagat ccgcctgttc tggtgcaaag
    15241 agatgcaaat agtactgttc gctttccgca tgccagcgcc acgcactacc gccaaatttt
    15301 gaacgccagt tgttcggtgg cgtttctggt tctccatcgc gccagatata aaactggcgg
    15361 taagggcttt ctttgttcag cgcctcgcga aaccaggcat gttgggtaga ggtatggtta
    15421 aacaccatat cgagaatgat acgaatcccg cgcgattttg cctgcgtcac cagttcgtca
    15481 aaatcgtcca gcgtgccgta ggtgggatca atcgccgtat agttcgctac gtcgtaaccg
    15541 ttatcgacct ggggagagac ataaaagggg gttagccaga tggcatcaac gcccagttta
    15601 tgcagatagt ccaggcgttg gataacgcca cgtaaatcgc cggtaccgct acccgtggtg
    15661 tcctgaaaac tctttggata aatctggtag ataacgccgt tttgccacca gtggggagga
    15721 ttagtcatta cgttattcct gcaaatgcga gggggcgcaa ttgcgccccg aagaaaatta
    15781 aacaatgtcc agcgtgccca ggcggtattt ccgctgatag ataaacgagg tgagtacaat
    15841 cgggatgatg atggcgatag ccattgccag cgcaaacacc tgccagtagt tcggttgaat
    15901 cgagagaatt cccggcaggc cgcctacgcc gatgccattc gccataacgc cgttcaggcc
    15961 gcatagcaat cctgccagac cagaaccaat catcgcgcac agcatcggga agcgatattt
    16021 caggttgatg ccgtacattg caggctcagt gaccccaagc caggcggaga tcgccgcagg
    16081 cacggagatc tcgcgttcat tgtgcttgcg gctggaaatg ataatgccga tcacggcgga
    16141 gccctgagcg atattcgaca gcgcaatcag tggccacact ggcgtaccac ccatgctttg
    16201 aatcatctgc aaatcaatag caagcgtggt ctggtgtacc ccggtgatca ccagcggggc
    16261 gtacaggaag ccaaacaatg ccgcgccaat cggagcaaag ctgccggtca tcaggtgacg
    16321 taccgcaaag gcaacgccat cgccaatcat gcgaccaaac ggaccaatca gcgcatgggc
    16381 gaggaacacc gcgaggatca gcgaacagac gggcaccacc accagataga ggtaatctgg
    16441 cacgatgcgt ttaaggcgag tttcaataac gcccagcgcc agcccggcta acagtgccgg
    16501 gatcacctgc gcctgatagc ccactttggc gatgctgaac atgccaaagt cccacacttc
    16561 cggcagctgc tgcccgagca gataagcgtt catcagttgg ggggaaacca gtgtcacgcc
    16621 aagcacgata ccaaggatcg gtgtgccgcc catttttttc accgctgacc agcaaatccc
    16681 gaccggcagg tagaagaaga tcgcttcacc gatcaaccac agaaaatcgt agatcgtttg
    16741 cagggaaggg tacatttgcg ccagcgtttg accgttgctc atgggcaaat cgccgatcac
    16801 attgcgaaaa ccgaggatca aaccgccgct aatcaacgcg ggcagcaacg ggaagaaggt
    16861 ctctgcgaaa tgagtgatca actgctcatg ccatttcata ttctgccggg cggctttttt
    16921 tacctgctct ttatcaacct gcgcctgtcc ggttgacgct atcagtgctt gatagtagtc
    16981 acccacgttg gtgccaatca ccacctgaaa ttgcctggca ttggtgaaac agcctttcac
    17041 catggggagt tgctcaattt ctttcggtct ggcattggcc ggttggttga ggacaaagcg
    17101 taggcgagta atacagtggc tcaccgtcgc aatattgccg cgcccgccga ccagttcaat
    17161 caaccgatcg atatccgttt ggtttatttt gctcatcata aagccccatg gcagatgaca
    17221 tttttggttg gctgcagaat atattgcgcg gaaaaattta aaaacgggaa cgttcccgaa
    17281 acgcagcgaa gatcacaatt tatcgttcag gaaacgatct ggacagggtg gcggggatga
    17341 tgatttgttg cggttcgctg cgcccggtta cctgtgcgat caactggcag gccgcctggc
    17401 gtccagcttc ggcgtaaccg ggatctacgg tgacgatctc cggatggagg aatttcatta
    17461 acggcgtatt accgacgctc gccagttgca aggtgtcgat gcgttgctct tgcaggtatt
    17521 tacttgcgcc aagtgccagc gtgtcggttg cgcacagtaa ggcggtagtt tcaggcgtaa
    17581 tcacttttgc tacgttctca tagccttgct tcatagcaag gcctggcaga gcggcaacgg
    17641 gatgcagttt atgcgctttg cagaacgcca ggtaggcttc gtgacgtcgc ttaccggtcg
    17701 tcacgtcact gtgcggcacg ccgagataac tgatattacg atgcccctgg tcatacagcc
    17761 gttgcatcag gatcttgatt gccccttcgt cgtcataaca gaccgaagca aagccttttg
    17821 cgtcacgcgc cagcagaacc agcgatgact gccagtgggc taacatttct tctgttatgc
    17881 cggtaaaacc gaacagcact acgccgtcga tattacgccg tttcagcacc cccaaatgtt
    17941 cggcaactaa ttgcggggaa aactgacttt ccatcatgat tgggtcgtaa ccttgttcat
    18001 agaactctgg cagcatggtt tgaacggcga gattttctga caacgaatcc aggcgggtaa
    18061 caatgatggc gaccacttta tcgctttgcc cacgcatagc gcgcgcagag cgggaagggg
    18121 aaaatccatg ctgattcatc actgcttcaa cacgctcgcg ggtgcgctgg ctcacgccgc
    18181 tttcgttatt cagcacccgg gaaactgtag atttccccac gccgcttaag cgcgcgatgt
    18241 ctttgatggt cagccgattt tgcatcctgt tgtcctgtaa cgtgttgttt aattatttga
    18301 gcctaacttt acccgtgcat tcagcaatgg gtaaagtctg gtttatcgtt ggtttagttg
    18361 ccagcaggta ttatatcgcc atagatgcta cgaatattat tggattctcc ttattatttg
    18421 cggcgctttt ttcacttacc ggaggttata tggaacctga tcccacgcct ctccctcgac
    18481 ggagattaaa acttttccgg taagcccgtc ttttcacggc gttaccggat gcgtaaggcc
    18541 gtgacgtttt aacgtccctg ctcagcttta ttaccttcag gtaaggcttc gccacgcctg
    18601 aagacatttc tgtactgttt cagacagtgc ggagggactc cttatgttta aagaaatttt
    18661 tacccggctc attcgccatt taccttcccg tctggttcat cgtgatccat tgcctggcgc
    18721 gcagcagaca gtgaatacgg tggtcccgcc gtccttaagt gcgcattgcc tgaaaatggc
    18781 ggtgatgccc gaagaagaat tgtggaaaac gttcgacacc catccggaag ggttaaatca
    18841 ggcggaagtg gaatctgccc gcgaacaaca tggtgaaaat aaattacccg cacaacaact
    18901 gtcgccgtgg tgggtacatt tatgggtctg ctatcgcaac ccctttaata ttttactcac
    18961 cattctcggc gctatttctt acgccacgga agatttattt gctgcgggcg ttatcgcgct
    19021 aatggtcgct atttctacgt tgctgaactt tattcaggaa gcacgttcca ctaaagcggc
    19081 agatgccctg aaagcgatgg tcagcaatac cgcgacggtg ctgcgcgtaa ttaacgacaa
    19141 aggcgaaaat ggctggctgg agatcccgat cgaccagctg gtgcccggcg atattataaa
    19201 actggcggcg ggggatatga tcccggcaga tttacgtatc ttgcaagcgc gggatctgtt
    19261 cgtcgctcag gcgtcgttaa ccggtgagtc tctgcccgtg gaaaaagccg ctaccactcg
    19321 ccagccggag cacagcaatc cgctggagtg cgacacgctg tgttttatgg gcaccaccgt
    19381 ggtgagcggc acggcacaag caatggtgat tgctacaggt gccaatacct ggtttggtca
    19441 actggcgggg cgtgttagtg agcaggaaag cgagccgaat gcctttcagc aagggatcag
    19501 ccgcgtcagt atgctgctga ttcgctttat gctggtgatg gcaccggtgg tgctgttaat
    19561 caatggctac accaaaggcg actggtggga agcggcgctg tttgcgcttt cggtcgcggt
    19621 aggcctaacg ccggaaatgt tgccgatgat tgttacctcg acgctggcgc gcggcgcagt
    19681 aaagctgtcg aaacagaaag tgatcgtcaa acatctggat gctattcaga actttggcgc
    19741 aatggatatt ctgtgcactg ataaaaccgg caccctgacg caggataaaa ttgtgctgga
    19801 gaatcatacc gatatctccg gtaaaaccag cgaacgcgtg ctgcatagcg cgtggttgaa
    19861 cagtcattat cagaccggac ttaaaaacct gctcgataca gcggtgctcg aaggtacgga
    19921 tgaagagtca gcgcgctcgc tggccagtcg ttggcaaaaa atcgatgaga ttccgtttga
    19981 tttcgagcgt cgccggatgt cggtggtagt ggcagaaaat accgagcacc atcagctggt
    20041 ttgcaaaggt gcattgcagg aaatcctcaa tgtgtgttcg caggtgcgtc acaatggcga
    20101 gattgtgccg ctcgatgaca tcatgctgcg taagattaag cgggttactg atacgctgaa
    20161 tcgtcagggg ctgcgcgtgg ttgcggtggc gacgaaatac ctgccagcgc gtgaaggaga
    20221 ttaccagcgg gcggatgaat ccgacctgat cctcgaagga tatattgctt ttcttgatcc
    20281 gccaaaagag acaaccgctc cggcactgaa ggcattaaaa gcgagtggaa ttaccgtaaa
    20341 aatccttact ggcgacagtg agttagttgc agcgaaagtg tgccatgaag tggggctgga
    20401 cgcgggagag gtggtcattg gtagtgatat tgaaacgcta tctgacgacg aactggcaaa
    20461 tcttgcacag cgcaccacgc tgtttgcccg cctgacgccg atgcataaag aacgcattgt
    20521 gaccttactg aagcgcgaag ggcatgtggt tggctttatg ggcgatggta ttaatgatgc
    20581 gcccgcctta cgcgcggcgg atatcggcat ttctgtggac ggcgcggtag atattgcccg
    20641 tgaagcggct gatatcatcc tgctggaaaa aagcctgatg gtgctggaag agggggttat
    20701 tgagggacgt cgcactttcg ccaacatgct gaaatacatc aaaatgacgg cgagttctaa
    20761 ctttggtaat gtgttcagcg tgctggtggc gagtgctttc ttgcccttcc tgccgatgtt
    20821 gccgttacac ttgcttattc agaacctgct gtacgatgtg tcacaggtgg cgatcccgtt
    20881 tgataacgtc gacgacgagc aaattcaaaa gccgcagcgt tggaatccgg cggatctggg
    20941 gcgctttatg atcttcttcg gaccgatcag ctcgatcttc gatattctga cgttttgcct
    21001 gatgtggtgg gtattccatg ccaacacgcc ggaaacgcaa acgctgttcc agtcgggatg
    21061 gtttgtggtg ggcttactgt cgcaaacgct gattgtgcat atgatccgca cccgccgtgt
    21121 gccgtttatt cagagctgtg catcgtggcc gttaatgatc atgaccgtga tcgtgatgat
    21181 tgtcgggatc gcattgccgt tttcaccgct ggccagttat ctgcaattac aggcgttgcc
    21241 gttaagctat ttcccgtggc tggttgcgat tctggcaggg tatatgacgt taacccagtt
    21301 ggtgaaagga ttttatagcc gtcgttacgg ctggcagtaa agaataaact aggcatggtg
    21361 gcccggattc agattgcaga caaagtgagt tttgttcatg ccggatgcgg tgtaaacgcc
    21421 taatccggcc tacaaattca atcaattgca ggaatcacgt aggcctgata agcgtagcgc
    21481 atcaggcgat tttgcgtttg tcatcagact taatccgggc atgatagccc ggatttccat
    21541 caagattagc gacgaatagc gatcgcttcg atctcaatct ttacgtcttt cggcagacgg
    21601 gcaacttcaa cgcaagaacg tgccgggaag gtggcgttgt gttcggtgaa gaaggcttcg
    21661 taagtggcgt ttacggttgc gaagtcgttc agatctttta caaacacggt agttttaacg
    21721 atgtcgccca ctttcagacc agcggcttcg acgatcgctt ttacgttatc cagcgactga
    21781 cgtgcctgtg cagcgacgtc tgccggtact tcgcccgttt tcggatttac cgggatctga
    21841 ccggaggtga tgatcatatt tcccagatca acgccctgta cgtaaggacc gatagctgct
    21901 ggtgcatttt ccgtcgcgat agttttgctc atgatttctc ctttattaca gcggtaaaaa
    21961 gtctggctca ttatagggag ccagactttt attaccaacc gcaattaatt ggccagcacc
    22021 acattatggg aaaactcttt ttcacagtat ttgcatttga gcgcgatgtc attggcgcgt
    22081 tttcgcacgg caaagctgga tgaaaccggt tcggcatggc tgatacagtt gctgttcggg
    22141 cagaccaaca cattgtcgat gcgctctggc agactggggc gcgatttacc caccacttca
    22201 tagttgtcga tacggttaac cgtggcttgc ggcgcataca atgccagttg atctacctga
    22261 tcttcactca aaaaggtatt ttcgattttg atcagatctt tgcggcccat ctcgccagaa
    22321 ggcaggttca gaccaatggt gatgcgctga tccgtttcgg tcagcttgaa cagactcaac
    22381 agcttaaaac cgatctgggc ggggatatgg tcaattactg tgccgcgttt aatagcttca
    22441 acctgcaatt tattatcgtg tgtcatctct atttcccctt acagtaccag atcgcgattc
    22501 agaaccagtg ccagtaacgc ctggcgagcg aaaatcccgt tgcctgcctg ctggaagtac
    22561 caggcgtgtg gcgttttatc aacatccgtc gcaatttcat caacacgcgg cagcggatgc
    22621 agtactttca tattggcttt ggcgttgtgg agatcgctgg cgcgaagaac aaactgcgct
    22681 ttcacgttgg cgtattcgga tgggtccagg cgctcttttt gcacgcgggt catatacagg
    22741 atgtctactt ccgccatcac ttcttcaata gagctgtgca gactccatgc gatccctttt
    22801 tcatcgagca tatccagaat gtattgcggc attgccagcg cgtccggcgc gatgaagtaa
    22861 aaacggttgc cgtcgaactt cgctaacgcc tgagtcaggg agtgaacggt gcggccatat
    22921 ttcaggtcac caaccattgc gacgtggaga ttgtccagac gcccctgggt ttcctgaata
    22981 gtgaataagt ccagcaaggt ttgcgtcgga tgttggttgg agccatcacc ggcattcagt
    23041 accggtacat tgccggaaaa ctcggtggcc aggcgcgccg caccttcctg cggatgacgc
    23101 atcactatcg catcgacgta agtgctgata accgaaatgg tatcggccag cgtttcgccc
    23161 tttttaccca gtgatgtatt ggcgctgtcg gagaagccca ccacgctggc acccaggcgg
    23221 tgcatggaag tttcgaaaga gaggcgggta cgggtagagg cttcgaagaa gcagctggca
    23281 atgactttgt gcttcaacag ctctggttgc gggtttgctt tcagttttgc cgctgttgcc
    23341 agcaccagat taaggtcatc gcgactaagg tcgtttatgg aaatgatatg tttctgatat
    23401 agcggattag ccatctttta tctcctgacg cctgggcaaa aaaaagcccc tcgattgagg
    23461 ggctgggaat gggtgatcaa cgggaagaaa aacggcaggc cagcgtcttt tttcagacgc
    23521 ggtaagacaa aatgtcgaac acactgaacc atacatcctc ccggcaaatt gtccggcatt
    23581 atactcatcg tcagaagcgg tgcaagcaat tgatgcaata ttttgtcagc gcaaacggtt
    23641 tatttgaatt taaagttaaa atatatgcat ttttatttac tgtgattctg gggggaactg
    23701 tcgttcggta tcaataattg cagacatttc ctgctttttt ctttttcact ttcacgcaat
    23761 cagatatgca ttttattcca ttcatccgac ttatagggcg gagtgtgaaa acgaacggct
    23821 agcactattg cttagagctc agggatgcgc gctatcactt taatttcaaa atcaaagcct
    23881 gccagccatg taacgcccac cgccgtccag gttggataag atggcgcgct aaatatttca
    23941 tttttcaccg tcatgatgtc ttcaaattgt ttttctggat cggtatgaaa gctcgtaaca
    24001 tcaatgatat cgtcaaaagt gcatcccgca gctgccaggg tcgcatgcaa attatcaaag
    24061 gccagtctga cttgttgctg aaaatcgggt tctggtgttc cgtcctctcg acttcctact
    24121 tgcccggaaa caaacagcaa atcgccggaa cgaatagccg cagaataacg atgctcagca
    24181 tacagtgaat gtcgtccagc agggaaaaca gcggttcttt ctaccatttg gttatcctca
    24241 agatttacga catgaacaga agatttatat ttaccaggag ccgcttttag cggacgacgt
    24301 gagtaaacaa aacccagaca tcatgggaaa tggctgggct taattgagcg tagtcggtta
    24361 tgcgccaaac gcgccatcaa tggtatgcat cgcgccggta acaaaactgg cttctggccc
    24421 tgctaaccat gcgaccatac cagcgacctc ttccggttgc ccatgtcttt tgatggccat
    24481 aaaactatgc gacatatcgc gcattggccc gttggcggga ttagcgtcgg tatcaattgg
    24541 ccctggctgg acgacgttga tggtgatccc acgcggtccg aaatcacggg ccagcccgcg
    24601 cgccatgcct tgcagggcag atttactggc ggcataagca gccatgcctg caacaggcat
    24661 acgatcgcca ttcacggagc cgatgattaa gatgcgtccg ccttcgggca tctgccgggc
    24721 ggcttcaaca gaggcatggt aaggagcatg aatattgatt ttgaaaaggc gatcaatatc
    24781 gtcggcattt aattccaggg catcgccaaa gacgccaata cctgcattta ccaccaggat
    24841 atccaatgcg ccgctcttac gaacgacatc aataacagcg tctttgtcag cactatctgt
    24901 gaatactgct gtcgctccag tctcttgtgc caggcgttca gcggcatctt tcgaccccgc
    24961 ataggtgaat cgtacattgg ccccatcggt gacgaaacga cgtacgatag cggcaccgat
    25021 tccacggcta ccaccgagga tgagaactgt cttacctgta aaagcgccca taaggactcc
    25081 ttgatttatt atgtaacatg cattacaaaa ctgttttaac tttctgtcaa caagttttgt
    25141 aatggtcact aaaaaacaat ctcgcgttcc aggtcgtccc agacgtttcg ctcctgagca
    25201 ggcagtctct gcggcaaaag tgctttttca ccaaaaaggt ttcgatgctg tcagtgttgc
    25261 tgaagttact gattatcttg gtattaaccc cccgagcctc tacgcggctt ttggcaataa
    25321 ggctgggtta tttagccgtg tactcaatga atatgtcggt acggaagcta ttccgcttgc
    25381 cgatattctt cgtgatgatc gtccggtagg ggagtgcctg gctgaggtat taaaagaagc
    25441 ggcgcgccga tatagccaaa acggcggctg cgctggctgt atggttcttg aaggcattca
    25501 tagtcatgat ccacaagcgc gtgatattgc cgttcaatat tatcacgccg cagaaacgac
    25561 catttatgac tatatcgcca ggcggcatcc acaaagcgca caatgtgtga ctgattttat
    25621 gagtaccgtg atgtcagggc tttctgcgaa ggcacgggag gggcactcca tcgaacaact
    25681 ctgtgcaaca gctgcactgg cgggggaagc gataaaaact attctcaagg agtgatgcgg
    25741 gccttgaccc gaaaggcggg aacgcgcctg ccgataagtt gtgataagac aataattcac
    25801 gcgttaaggc tagcggaatt gatcatcttt tcgtataacg atggaaatga aacgttgttt
    25861 taattaagga gtggaaaaga tgatcatcgg aaatattcat aatcttcagc cgtggctacc
    25921 ccaggagtta cgccaggcga ttgagcatat caaagcacac gttacggcag aaacgccaaa
    25981 gggcaagcac gatatcgaag gcaatcgtct gttttatctt atctcggaag atatgaccga
    26041 gccgcacgaa gctcgccgtg cggagtacca tgcccgctat ctcgacattc agattgtgtt
    26101 aaaaggtcag gaaggcatga ccttcagcac gcaacctgca ggcaccccgg ataccgactg
    26161 gttagctgat aaagacatcg catttttgcc ggaaggcgtt gatgagaaaa cagttatcct
    26221 taatgaaggt gattttgttg tgttttatcc gggggaagtg cataaaccgc tgtgcgcagt
    26281 gggcgcgcca gcccgggttc gcaaagcagt agtgaagatg ctgatggcgt gatgactttt
    26341 cgccgtaaat aactccaggt ttacggcgag tttgtgaaaa gagcgttttt tgatattttt
    26401 ttgtgagtaa aatttgtaat gcttagacgt tcttattaac tcaaggagtt cgtcatgagc
    26461 aaaatatcag atttgaatta ttctcaacac attacattag ccgacaattt taaacaaaaa
    26521 agtgaagttt taaatacctg gcgtgttgga atgaataatt ttgcccgtaa tgccgagggg
    26581 caggataaca caagaaatat ccttgatcct aagacatttt tggaattttt ggtaaaaata
    26641 tttactctag gttatgtgga ttttagcaaa cgctccaacg aagcgggaag aaatatgatg
    26701 gctcatattg agtcctcatc ttatatcaaa aataatgatg gcagtgagat aataaagttt
    26761 gttatgaata atcctgaagg ggaacgagcg gatttatcta aggtggaaat agaaatcaca
    26821 ctttccactt tcactactat ggggactcgt caaggacata cggctattat atttcaacaa
    26881 cctgatggtt cgactaatcg ttatgaagga aagtcctttg aaagaaaaga tgagagttca
    26941 ttacacctga ttactaacaa gattctggca tgttaccaac gcgaagctaa caaggaaata
    27001 gctcgtctat taaatatttc acaggagtta aataattctc aggacttgaa taactcgcag
    27061 gtgagttgta aagattcagt tgattctacg attacggatt tattagaaaa accattgaat
    27121 aatgcattat tagcaataag gaaagaacat ctgctattaa tgccttatgt atgtaatgaa
    27181 tcgatttcat acttgcttgg tgaaaaaggg atactgaaag aaatagatga ccttaacgca
    27241 gtaaataatt atcttcttaa taataagaaa gctactgaca atgaaattaa tgacatcaaa
    27301 gttaacctgt ctcatattct tattgattcc ttagatgatg caaaagttaa ccttacaccg
    27361 gtcatcgatt ctggatgact tttttaaaat ccccatatat taatgatgta agaatactgg
    27421 attggtgttt taataaaaga atgcaatatt ttggtgattc tgaaaagata aagtatgcat
    27481 gctccgtgat aaatcatatt gattttagcc gcgatcaatc taaagatttt agctgcgatc
    27541 aatctaaaat taaaatagct gagaccttat ttttcaatct cgataaagaa ccctataaaa
    27601 at
//
LOCUS       DAJVUY010000039        27450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.039, whole genome shotgun sequence.
ACCESSION   DAJVUY010000039 DAJVUY010000000
VERSION     DAJVUY010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.039"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            454..3639
                     /gene="rne"
                     /locus_tag="OQQ72_001504"
     CDS             454..3639
                     /gene="rne"
                     /locus_tag="OQQ72_001504"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HCS2011280.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ72_001505"
     CDS             complement(3836..4789)
                     /gene="flgL"
                     /locus_tag="OQQ72_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HCS2011281.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFAIQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLAVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ72_001506"
     CDS             complement(4801..6444)
                     /gene="flgK"
                     /locus_tag="OQQ72_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HCS2011282.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ72_001507"
                     /pseudo
     CDS             complement(6510..7451)
                     /gene="flgJ"
                     /locus_tag="OQQ72_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ72_001508"
     CDS             complement(7451..8548)
                     /gene="flgI"
                     /locus_tag="OQQ72_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HCS2011283.1"
                     /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG
                     LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT
                     IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL
                     NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA
                     RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA
                     QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSARLNNVVRA
                     LNALGATPMDLMSILQSMQSAGCLRAKLEII"
     gene            complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ72_001509"
     CDS             complement(8560..9258)
                     /gene="flgH"
                     /locus_tag="OQQ72_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HCS2011284.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ72_001510"
     CDS             complement(9311..10093)
                     /gene="flgG"
                     /locus_tag="OQQ72_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HCS2011285.1"
                     /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL
                     LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF
                     FQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT
                     QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY
                     VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMQQKLTQL"
     gene            complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ72_001511"
     CDS             complement(10231..10986)
                     /gene="flgF"
                     /locus_tag="OQQ72_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HCS2011286.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ72_001512"
     CDS             complement(11006..12214)
                     /gene="flgE"
                     /locus_tag="OQQ72_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HCS2011287.1"
                     /translation="MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA
                     GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL
                     DENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNS
                     SDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDP
                     NSIAKTATTLEFNANGTLVDGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIV
                     ATPQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWS
                     ATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQD
                     QILNTLVNLR"
     gene            complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ72_001513"
     CDS             complement(12239..12934)
                     /gene="flgD"
                     /locus_tag="OQQ72_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HCS2011288.1"
                     /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK
                     NQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQASNLIGHGVMI
                     PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
                     SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT
                     YGTTTLDEVRQII"
     gene            complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ72_001514"
     CDS             complement(12946..13350)
                     /gene="flgC"
                     /locus_tag="OQQ72_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HCS2011289.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ72_001515"
     CDS             complement(13354..13683)
                     /gene="flgB"
                     /locus_tag="OQQ72_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HCS2011290.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTLGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYQMSLSALSGQIKGMM
                     NVLQSGN"
     gene            13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ72_001516"
     CDS             13839..14498
                     /gene="flgA"
                     /locus_tag="OQQ72_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HCS2011291.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARMRMVSGLVVSGVVDADGNILIN
                     L"
     gene            14574..14891
                     /gene="flgM"
                     /locus_tag="OQQ72_001517"
     CDS             14574..14891
                     /gene="flgM"
                     /locus_tag="OQQ72_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HCS2011292.1"
                     /translation="MSIDRTSPLNPVSTVQPRETTDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADALINEAQQDL
                     QSN"
     gene            14896..15312
                     /gene="flgN"
                     /locus_tag="OQQ72_001518"
     CDS             14896..15312
                     /gene="flgN"
                     /locus_tag="OQQ72_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HCS2011293.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(15352..16887)
                     /gene="murJ"
                     /locus_tag="OQQ72_001519"
     CDS             complement(15352..16887)
                     /gene="murJ"
                     /locus_tag="OQQ72_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HCS2011294.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17054..17920)
                     /locus_tag="OQQ72_001520"
     CDS             complement(17054..17920)
                     /locus_tag="OQQ72_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS2011295.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIEC
                     VQNQTVPQTAGE"
     gene            complement(17922..18569)
                     /locus_tag="OQQ72_001521"
     CDS             complement(17922..18569)
                     /locus_tag="OQQ72_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HCS2011296.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAELESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD"
     gene            complement(18580..19164)
                     /gene="rimJ"
                     /locus_tag="OQQ72_001522"
     CDS             complement(18580..19164)
                     /gene="rimJ"
                     /locus_tag="OQQ72_001522"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HCS2011297.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            19400..20602
                     /gene="mdtH"
                     /locus_tag="OQQ72_001523"
     CDS             19400..20602
                     /gene="mdtH"
                     /locus_tag="OQQ72_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HCS2011298.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHRLM
                     AGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMG
                     FSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKRAA
                     RRLLERDA"
     gene            20666..21313
                     /gene="grxB"
                     /locus_tag="OQQ72_001524"
     CDS             20666..21313
                     /gene="grxB"
                     /locus_tag="OQQ72_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HCS2011299.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            21447..22007
                     /locus_tag="OQQ72_001525"
     CDS             21447..22007
                     /locus_tag="OQQ72_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2011300.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22113..23159
                     /gene="pyrC"
                     /locus_tag="OQQ72_001526"
     CDS             22113..23159
                     /gene="pyrC"
                     /locus_tag="OQQ72_001526"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCS2011301.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVMPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            23233..23478
                     /gene="dinI"
                     /locus_tag="OQQ72_001527"
     CDS             23233..23478
                     /gene="dinI"
                     /locus_tag="OQQ72_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HCS2011302.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRISEILQETWESADDWFVSE"
     gene            23768..24022
                     /gene="bssS"
                     /locus_tag="OQQ72_001528"
     CDS             23768..24022
                     /gene="bssS"
                     /locus_tag="OQQ72_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HCS2011303.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24137..25255
                     /gene="solA"
                     /locus_tag="OQQ72_001529"
     CDS             24137..25255
                     /gene="solA"
                     /locus_tag="OQQ72_001529"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HCS2011304.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            25303..25416
                     /locus_tag="OQQ72_001530"
     CDS             25303..25416
                     /locus_tag="OQQ72_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceO family protein"
                     /protein_id="HCS2011305.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            25677..26243
                     /locus_tag="OQQ72_001531"
     CDS             25677..26243
                     /locus_tag="OQQ72_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCS2011306.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFTLGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            26247..26822
                     /locus_tag="OQQ72_001532"
     CDS             26247..26822
                     /locus_tag="OQQ72_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCS2011307.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(26864..>27450)
                     /locus_tag="OQQ72_001533"
     CDS             complement(26864..>27450)
                     /locus_tag="OQQ72_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS2011308.1"
                     /translation="NHYEYEVGHFENAFEIPADTFREQLPKAVEMMQAHKDKKIVMYC
                     TGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGER
                     ISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPE
                     EQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6587 a         7307 c         6912 g         6644 t
ORIGIN      
        1 gggatgcgtt catataaaaa ctgtgagtaa gcgggtgata aatggtaaaa gtcatcttgc
       61 tataacaagg cttgcagtgg aataatgaag ccgtttccgt gtccatcctt gttaaaacaa
      121 gaaattttac ggaataaccc attttgcccg accgatcatc cacgcagcaa tggcgtaaga
      181 cgtattgatc tttcaggcag ttagcgggct gcgggttgca gtccttaccg gtagatggaa
      241 atatttctgg agagtaatac ccagtctgtt tctttgataa ttgcgctgtt tttccgcatg
      301 aaaaacgggc aaccgacact ctgcgcctct ttgagctgac gataaccgtg aggttggcga
      361 cgcgactaga cacgaggcca tcggttcaca cccggaaagg cgttactttg cccgcagctt
      421 agtcgtcaat gtaagaataa tgagtaagtt acgatgaaaa gaatgttaat caacgcaact
      481 cagcaggaag agttgcgcgt tgcccttgta gatgggcagc gtctgtatga cctggatatc
      541 gaaagtccag ggcacgagca gaaaaaggca aacatctaca aaggtaaaat cacccgcatt
      601 gaaccgagtc tggaagctgc ttttgttgat tacggcgctg aacgtcacgg tttcctccca
      661 ctaaaagaaa ttgcccgcga atatttccct gctaactaca gtgctcatgg tcgtcccaac
      721 attaaagatg tgttgcgtga aggtcaggaa gtcattgttc agatcgataa agaagagcgc
      781 ggcaacaaag gcgcggcatt aaccaccttt atcagtctgg cgggtagcta tctggttctg
      841 atgccgaaca acccgcgcgc gggtggcatt tctcgccgta tcgaaggcga cgaccgtacc
      901 gaattaaaag aagcactggc aagccttgaa ctgccggaag gcatggggct tatcgtgcgc
      961 accgctggcg tcggcaaatc tgctgaggcg ctgcaatggg atttaagctt ccgtctgaaa
     1021 cactgggaag ccatcaaaaa agccgctgaa agccgcccgg ccccgttcct gattcatcag
     1081 gagagcaacg taatcgttcg cgctttccgc gattacttac gccaggacat cggcgaaatc
     1141 cttatcgata acccgaaagt gctcgaactg gcacgtcagc atatcgctgc attaggtcgc
     1201 ccggatttca gcagcaaaat caaactgtac accggcgaga tcccgctgtt cagccactac
     1261 cagatcgagt cgcagatcga gtccgccttc cagcgtgaag tccgtctgcc gtccggtggt
     1321 tcgattgtta tcgacagtac cgaagcgtta actgccatcg acatcaactc cgcacgcgcg
     1381 acccgcggcg gcgatatcga agaaaccgcg tttaacacca acctcgaagc tgccgatgag
     1441 attgctcgtc agctgcgcct gcgtgacctc ggcggcctga ttgttatcga cttcatcgac
     1501 atgacgcctg tacgccacca gcgtgcggta gaaaaccgtc tgcgtgaagc ggtgcgtcag
     1561 gaccgtgcgc gtattcaaat cagccatatt tctcgctttg gcctgctgga aatgtcccgt
     1621 cagcgcctga gcccatcact gggtgaatcc agtcatcacg tttgtccgcg ttgttctggt
     1681 actggcaccg tgcgtgacaa cgaatcgctg tcgctctcta ttctgcgtct gatcgaagaa
     1741 gaagcgctga aagagaacac ccaggaagtt cacgccattg ttcctgtacc aatcgcttct
     1801 tacctgctga atgaaaaacg ttctgcggta aatgccattg aaactcgtca ggacggtgtg
     1861 cgctgcgtga ttgtgccaaa cgatcagatg gaaaccccgc actaccacgt gctgcgcgtg
     1921 cgtaaagggg aagaaacccc aaccttaagc tacatgctgc cgaagctgca tgaagaagcg
     1981 atggcgctgc cgtctgaaga agagttcgct gaacgtaagc gtccggaaca acctgcgctg
     2041 gcaacctttg ccatgccgga tgtgccgcca gcgccaacgc cagctgaacc tgccgcgcct
     2101 gttgtagctc cagcaccgaa agctgcaccg gcaacaccag cagctcctgc acaacctggg
     2161 ctgttgagcc gcttcttcgg cgcactgaaa gcgctgttca gcggtagtga agaaaccaaa
     2221 ccgaccgagc aaccagcacc gaaagcagaa gcgaaaccgg aacgtcaaca ggatcgtcgc
     2281 aagcctcgtc agaacaaccg ccgtgaccgt aatgagcgcc gcgacacccg tagtgaacgt
     2341 actgaaggca gcgataatcg cgaagaaaac cgtcgtaatc gtcgccaggc acagcagcag
     2401 actgccgaga cgcgtgagag ccgtcagcaa gctgaggtaa cggaaaaagc acgtaccacc
     2461 gacgagcagc aagcgccgcg tcgtgaacgt agccgccgcc gtaacgatga taaacgtcag
     2521 gcgcaacaag aagcgaaggc gctgaatgtt gaagagcaat ctgttcagga aaccgaacag
     2581 gaagaacgtg tacgtccggt tcagccgcgt cgtaaacagc gtcagctcaa tcagaaagtg
     2641 cgttacgagc aaagcgtagc cgaagaagcg gtagtcgcac cggtggttga agaaactgcc
     2701 gctgccgaac caattgttca ggaagctcca gctccacgca cagaactggt aaaagtcccg
     2761 ctgccagtcg tagcgcaaac tgcaccagaa cagcaagaag agaacaatgc tgataaccgt
     2821 gacaacggtg gcatgccgcg tcgttctcgc cgctcgcctc gtcacctgcg cgtgagtggt
     2881 cagcgtcgtc gtcgctatcg tgacgagcgt tatccaaccc agtcgccaat gccgttgacc
     2941 gtagcgtgcg cgtctccgga actggcctct ggcaaagtct ggatccgcta tccaattgta
     3001 cgtccgcaag atgtacaagt tgaagagcag cgcgaacagg aagaagtaca agtgcagccg
     3061 atggtgactg aggtccctgt cgccgccgct gtcgaaccgg ttgttagcgc gccagttgtt
     3121 gaagaaatgg ctgaagtcgt agaagccccc gtaccggttg ccgaaccgca accggaagtg
     3181 gttgaaacga cgcatcctga agtgattgcc gccgcggtaa ctgaacagcc gcaggtgatt
     3241 accgagtctg atgttgccgt agcccaggaa gttgcagaac acgcagaacc ggtggttgaa
     3301 ccgcaggaag agacggcaga tattgaagaa gttgccgaaa ctgctgaggt tgtggttgca
     3361 gaacctgaag ttgttgctca acctgccgcg ccagtcgtcg ctgaagtcgc agcagaagtt
     3421 gaaacggtag ccgcggttga accagagatc accgttgagc ataaccacgc taccgcgcca
     3481 atgacgcgcg ctccggcacc ggaatatgtt ccggaggcac cgcatcacag tgactggcag
     3541 cgccctactt ttgccttcga aggtaaaggt gccgcaggtg gtcatacggc aacgcatcat
     3601 gcctctgccg ctcctgcgcg tccgcaacct gttgagtaat aattagctca aagtaatcaa
     3661 gccctggtaa ctgccagggc ttttttattt catgtttgaa tcaacatatt aaaattcatc
     3721 aaatggcatc cttgctaacc aacaatgcaa aataggcaaa aaaaatgccc gccccggcga
     3781 tccctgagcg ggcagacaaa acatacccag tttcatgata tgttttaaag cgagcttatt
     3841 tgttgagctg gaagagcgac aatccctgca tatcggtaaa tgctttatac gatgcctgca
     3901 atgccgtttg ctgcatgatg taagatgaaa tagttgcatt ccagtccaca tcaaccagat
     3961 cgctcatctg ctgcgtttgc cctaaagcgc gatcgctacc taaggaatcc agcgactcca
     4021 gttcgttcag ctgcgtgcct aattccgcgc gaacggcaag gacattattc agcgagtttt
     4081 tcagtccacg gttggtttta tccaatgccg cagcggcgat ttctttatcc gcttcgctat
     4141 ccgcgaccgg cgttttcagg gctgcgatgg cgctatccag catggcaaaa agattggttt
     4201 cagaagcgct accgtctggc tccgcaactg cgttgctggt aatactgtcg aaaattttgt
     4261 cacccgtgtg ccctatcacc atcgaacgcg aagcatcgac ctgttgctta atactttctg
     4321 ctccaccgac gtatttccct ttctcttcgc taaacggcgc agtctctgtt ttataaccgg
     4381 caaaaatgta gcgcccgtta ccgtcagtgg tgttcgccag attcagcaac tggtcacgaa
     4441 gcccctgaat atccgtagcc agcgaggccc ggtcatcgtc actcaaggtg ccattgctgg
     4501 cgtagacaat tttttcctga gcattctgga tagcagtggt gacctggcta agtacactct
     4561 cttccagtga cactttttga atggcgaaag tacgcgccag cgtgtactgg ctgttttgcg
     4621 cctgtgcctg ggagagaact acggcttgtg atgctgcaat gggatcgtca gaagggttaa
     4681 cgactcgctt acctgtcgac atctgctcgc cgtacttcat ccattccgcc tgagaattgg
     4741 tgatgccacg catgttttgc tggtacatca tctgggtact gaaacgcatc ttatctcccc
     4801 ttagcgaatg ttaatcagcg catcaaaaat cgcgtttgcc gtctgcagaa cctgcgcatt
     4861 cgccaggtaa tactgctgaa aacgttgcag atttccgtac tcttcgtcga gattgacgcc
     4921 agagatagac tgctgctgat tggaaagctg cgtcaccaca ttaccttgcg tggcgctact
     4981 ggttttcaac gtcgcggttt tattaccgat atcactcact aacgaggcat aagcgtcgtt
     5041 aaaggatttc gcaccgccca ccgttttact gttgctttgc agatccagca gggcctgacc
     5101 gttgcggtta tcgctatcac ccgcatcttt ttcgctcgcc atcgctattt tcgcttcgtc
     5161 ggtgattaat acatccatgt tgacgatggc gtcacttact ggtttcagcg tgaagctgtc
     5221 gttaacggca ggcgttcctg taaacgtcaa ctccagacca tcaaatgcca ctttaccgtt
     5281 ggcatccggc gtcaccgtaa aagtggtatt gctggcaagg cgggtgacct gccactgatt
     5341 attatcgaac gagattttgt aatctgtcgc cagtaccgcg gaggcatcag ttaccgtggc
     5401 accgatcgca acgtcacctt tgtttttcgt gttttgcaaa accgcgggct taccgatagc
     5461 aaagaaatct tcaccagcat cgccgttggc atcaaatccg gctttgtgtt gggtgttgaa
     5521 agcctcagca aatgccagcg ccagttgtcc aagcgtatta cgcgtctggt ccagatcctg
     5581 agaacggaat gtcagaatgc cgcccagcga cccggtattc agtaatttct ccgggatctc
     5641 aatattgcct gccgtcccat caacgtaagc gacagtcgta cgagaagggt cggcgctgga
     5701 aggaactgcc gccagttgcc gcgccgtact tccctgaacc agtgagtaac cattggccat
     5761 cgtgatgtta taagtgccgc catcctgaac gctgacttct acaccaacaa tctggtttaa
     5821 ttcgctcacc agttgatcgc gttgatccag cagattgtta ggtgacgccc ctgcccccac
     5881 gcctgtcagg cgggagattt ggtcgttcag gctggcgatt tgtttagcgt aattgttgat
     5941 ctgatcaacg ctggcaccta tcgcgatatt gacctgtttg tcctggtcgc gaagatactg
     6001 atcggtggtt ttaaactgat tcaccaaccc ttctgatttc ccaatcagcg cctggcgcgc
     6061 tgccgggtct tccgcgttac tcaccagcgt ttgcaggctg gtgaagaaat cctgcatctg
     6121 tgttgccagc gaagaggtac tggtggagag catattgtcg attttcgaca tctgctcata
     6181 gcgggcagtc aggccgctac tttgcgtctg cgccgcacgt aactggttgg tgataaacgc
     6241 atcatactca cgctgcacac cagaaacgta gacaccattg ccaacccagc cgccagcgcc
     6301 caacgtgcta ttggcctgcg ccataatagt ggtttggcgg gtatatccgg caacgttata
     6361 gctggagata ttattacttg ccgtatttaa cgccgcctgg gccgcgttca gtccgctcat
     6421 ggcgttatta atcaagctgg acatggaggt tccttataag ccttcaatta cagagtatta
     6481 tcggcagcga cccgccggac ttgagttatt caaaacagat tatcaatgtt catactgtag
     6541 gttttgctca ccttgtcgct tatcgatttc atctgctgaa tcatgttggt gagtttgcgg
     6601 gcatagtgag gatcggtggc atagcccgcg tcctgtaggg cctgcgcccc ctgctccgca
     6661 ctcgtggcgg tggtcacggc ggcgtagcgc gggttacgcg ttaacagccc aacgtaatcc
     6721 gactatgctt ccagatacga gctgtagacc cgaaacttcg cttttacttt cttcgcttcg
     6781 ccgttttcat attcagtcgt ggtgatttca gtaactggcc ctttccagtt gccagaggct
     6841 ttgacaccaa acaggttata gctcggctcg ccgttttcgc ggcggatttg ccgttgcccc
     6901 caaccagatt ccagcgccgc ctgagcgagg atcaaatgat gtggcacacc gctttgctgg
     6961 cttgccagtt gggcgggcag cgagagttgc gcgaggaatg ctttactgtc acccggcagc
     7021 gaatcatcgt agttacgtgg cacggccttt tgcaccagct gcgaaagcgc ctgattttga
     7081 taacgcacca cagtttcgag cgggaatttc atcggtgctg ctggcgtgga ctcctctggc
     7141 aatggttgtt ctggcgtcat ctgtttaacc atcatctctg caagccccag acctttgccc
     7201 gccgtcatct gttgggcaat ctgctggtca tacatactgg tatacaggcg agtgtgctcg
     7261 ctgctgaaca ggccatcttt tggtaaagcg tcgcgcatgc ttttcaacat catctgcacg
     7321 aacatccctt ccacctgacg ggccaccgga cggatatttg ccgccggatc ttcgcccgct
     7381 ttcgccttta gttcgttgag tgattgcgca tcccaggccg cacttgccag tagtttgcta
     7441 tcgctgatca tcagatgatt tccagttttg cccgcagaca tcccgcactt tgcattgatt
     7501 gcagtatgga catcagatcc atcggcgtag cgcccagcgc attgagcgcg cgcaccacgt
     7561 tattgagcct ggcgctggaa cgtacgcttt gcagcgaacc gccgctctgg cgtaaatcga
     7621 tctgcgtttg tggagtaacc acagtctgtc caccaccaaa cggtgtatct ggctggctga
     7681 cattggcctg acgattaact gttactgaga gattcccctg cgctaccgcg cagctgtcga
     7741 gggtcacttc gcgattcatc accaccgaac cggtgcgcga gttaatcact actttagcgt
     7801 cctgcggggt gacattaacc tgcatattct ggatatcggc aaggaagcgg acctgggaac
     7861 tgttgccact cggtacgcgc acctgaatag tccgcgcatc taacgcggtg gcgctgccat
     7921 atccacgcac gcggttgatg gtgtcagcga tttgctgcgc catgctgaaa tcttcgtcgt
     7981 taagttgcaa attaagggta ttcccgacgc caaactggct gggcaattca cgttcaataa
     8041 ccgcaccatt ggtgatccgt ccaccgttca gttggttaac ctgaacactg ctaccgccag
     8101 cggaggctcc tgcgccgcca accagaatat tgccctgcgc cagcgcatac acctgactgt
     8161 caacgccctt aagcggtgtc atcaacaacg tacctccacg caagcttttg gcattaccca
     8221 tggaagaaac caccacatcg atggtttgcc cctgacgtcc aaacggagga agtgacgctg
     8281 tcaccattac cgcagcgacg ttttttagct gcatattggt gcccgtcgga acggtaattc
     8341 ccagctgtga gagcatgtta ttaagcgttt gtgtggtaaa cggcgtctgg gttgtctggt
     8401 caccggtgcc atccagcccc accaccagac catagccaat cagtgagttt tgccttaccc
     8461 cctgaacact ggtgagatcg cgaatacgct cagcctgagc cgccgtcgtg accagtagaa
     8521 gaattaatgc agagagaaat ttaatcacca cagcctcact tacattggcg acaggttaag
     8581 gaagaaacgc tgcaaccagc ccatattttg cgcttcgtta atgtagccat tgcctacgta
     8641 ttcaatgcgc gcatccacca cctgagtaga cggtacggta ttgctgccgc tgatagtgcg
     8701 tggattaacc acgccagaga agcgaataaa ttcggtaccc tgattaatgg caatctgttt
     8761 ttcacccacc acatgcaggt tgccgttgac cagtacctgg tcaaccgtca ccgtcaacgt
     8821 gccgctaaag gtattgctgg cattggcccc gccctttccg ttgaacgtgt taccaccgga
     8881 ggcttcgaca tcggcacgag cgttaccaaa cagcccctgc aaatagcgcg gcacagtatc
     8941 aaagccaaaa ttagttttac cgtcacggct ggcattcgca gaggagcttt tgctggcgct
     9001 gacgttctcc tgcaacacga tggtcagcgt atcgccaata ttgcgtggtc gacgatcttc
     9061 aaacagcggt tgatagccat agttaatcgg ctgagcagac tggaaaatag aaccgttggc
     9121 gacgggcgtc ggaccgggaa ccggttgtgc actggtcgcc ccctgcacca gcggcgtgga
     9181 gggtatccag gcgcagccgg ttagtgaaag caccaacaag ctggaaatgg cataagtatg
     9241 cgcagcgttt ttttgcatgg ctatcatctt caaaaatcag taaaccggtg aacctgccac
     9301 cggttaagcc ttagagttgc gtcagttttt gctgcatctg atcggtggtg gacaccgctt
     9361 tactgttgat ttcgtaagcg cgttgcacct gaatcatatt gaccagttct tccgccacgt
     9421 tgacgttaga cgtttcaaca tacccttgat acagcaatcc cgcgccgttc aggcccggcg
     9481 tgctttcgtt cggtgcacca gaggattgcg tttcggtgta gaggttttcg ccaatgctct
     9541 ccagcccggt gtcattcata aaggtggtga gattgagctg cccaacctga accggagctg
     9601 cctggccttg ttgggttacg ctgaccacgc catcacgacc gatggtgata cttaacgcat
     9661 tcgccggaat ggtgatcgct ggctgcacct gaaaaccacc agccgtcacc agctgcccgt
     9721 tctgatccac ctggaaagag ccgtcacggg tataggctga tgaaccatct ggcaacatca
     9781 cctggaaaaa gccctgccct ttaatcgcga catctttgct gttgttggtc tgcgacagat
     9841 ttccctggct gtgtaagcgt tcagtggcga ccgggcgtac ccccgtgccg atttgtaatc
     9901 cggagggtaa ggtggtttgt tcggaagact gtgcccccgg ctggcgaatg gtttgataaa
     9961 gcagatcttc aaacaccgcg cgctgacgct taaaaccgtt agtactgacg tttgccaggt
    10021 tgttggcaat gacgtccata ttggtttgct gggcgtcaag gcccgttttg gcgatccata
    10081 atgaactgat cataaaatgt cctgtagtgg attagtgaca agcagagcag aagcacgcga
    10141 cagtgtgaat tccccctcac tctaaccctc tccccaaagg ggcgagggaa tagtccgcgc
    10201 gcttttattg caatgtcatc aatcgttcaa ttaactcatc gacagcagtt ggttggcacg
    10261 gcctgcgtta tcatcgacgc tgctgatcac cttcatctgc atttcaaaac gccgcgcgct
    10321 ggcaatcatg tcgctcattg ccgcaacggc attgacgtta ctgccttcca gaacccccga
    10381 catcacacgc aaggttggat ctgcctgcag taccggccct cgcgtggcct gggtttctgc
    10441 gcttaaacga aaaatgccgt cgtcaccgcg ctgcacttcg ctgcccgtgg ctttcaccag
    10501 tttcagacgc cctactggcg caactgtatt tgccggatcg cccggattga gcgccgagat
    10561 tgtgccatcg gcagcaatag tgatttccgc tccttccggc acagcaattg gccccgcctc
    10621 gcctatcacc tgatgcccct gaattgtcag ttgcccggtg ggatcaacct gaatgctgcc
    10681 attacgcgta tacccttcgc tgccgtcagc ggtctgcacg gccagccagc catcctgctg
    10741 caacgcaacg tccagcgggc gcgaggtgta atctatcttg ccgggcgtca tgtctgcacc
    10801 cggtgttgac gccgttacca gcgtgcgcgt gggcagtgaa agcccttcca ccggcactgc
    10861 gcgcaaggcg tttaactgcg cgcgaaaacc gggcgtagag gcattggcca gattactggc
    10921 ggttaccgcc tgttgattca gcgtctggct ggctgctccc atcgcagtat aaattgcgtg
    10981 atccattgag ctatcccgtc agcgattagc gtaagttaac cagcgtgttg aggatctggt
    11041 cctgggtttt gatggtctgg gcgttagact gatagttacg ctgggcaacg atcatattga
    11101 ccagttcttt actgagatcg acgttggacg cttccagcgc accgttggtc agggtgccaa
    11161 agtttcccgt cccggctgtc cccaacagcg ccacgccaga agattgcgtc gcagaccaga
    11221 cgttgtcgcc ttcggatgcc agaccttcgt tgttggcaaa gttcgccagt acaatctgcc
    11281 ccagcagttg agtttgttcg ttggaatagt tgccgacaac cgtaccgtca tcattgattt
    11341 gataactcac cagatcgccc ggtttgtagc cgttctgggg ggttgccaca atattgttag
    11401 cgccggtatt ttgctgcatg gagttgagga agctcagact aaacgtggcg ggttctgcac
    11461 cgttaattgc gccggttgcg atattattcg ccatcgcacc atccactaat gtgccattag
    11521 cattaaattc cagtgttgtc gctgtcttcg caatgctgtt tggatcactg ctatcctggg
    11581 tgtagacctg ccagttatta tccccggtct tcacaaagta gacgctcatg tcatgagcat
    11641 taccctgact gtcgaaaaca gtcaccgaac cttttttgtt atagctatcc gcattgctgg
    11701 cgctgaatgg cgtaacagta ggaagcggat cactggaatt caggttgatc tgcatcgacg
    11761 ccgtggtggt agttttcgct gccatcaggg tattcgggat cgaaatattg gtcggattcg
    11821 ccccttgctg aatagtcggc ggcgtaccgg ttgccgggta acccgtcagc tgtaaacctt
    11881 gcatattcac caggttacgg ttttcatcca gcttaaattg tccgttacgg ctgtagaaca
    11941 ccgaaccgtt gctgtctacc agacggaaaa aaccgttctg gctgatagca acgtccagac
    12001 ctcgcccggt gttggtggtc gtgccatctg taaagtcctg agtgataccg gcaactttta
    12061 cccccagtcc cactttcgaa ccggcaaaca tatcggcaaa agaggccgtg cctgatttaa
    12121 agccgtaggt ggcggagttg gcaatattgt tgccaataac atcgaggtta gtggcggcag
    12181 cgtttaatcc gctaaccgct tgagaaaagg ccatgactga ctcctgaaat gtgaaggctt
    12241 aaattatctg ccgtacttcg tcgagggtgg tggtgccgta agtgccgaga tccagcgtat
    12301 taccgctgtt gccgcggatc acaccctgca ccagagcaaa ctgcagcggc tgggcaacca
    12361 gttgtgtacc accgttactg gcggtaatcg ctacattgta agaaccgttc ggcgcagtgc
    12421 tgccatcagt caacgtaccg tcccaggtga aactgtgaac tccggcggtc agttcaccaa
    12481 tatcaatggt gcgcacaacc gcgccatttt tatcggtgat ggtggccgta actttgtctg
    12541 ccgcctgttg cagctcaaca ccaaacggcg tggtcgtggt cacagcccct tcttcactgc
    12601 cggttcccgc aagaacagtt gtgccgggga tcatcacgcc gtgaccgatc aggttactgg
    12661 cctgtaacga ctggctgtta tcaatctgtc cggaaataga tccgagcatg gtattgagtt
    12721 tttcaatccc gctgaccgtg ctgatttgtg ccaattgcga cgtcagctcg ttgttttcca
    12781 ttggattggt cgggtcctgg tttttcagct gcgccaccag caaagtcaga aaactgcttt
    12841 gtaaatctgc ggcgttgctg cccgtgagcg aactactgct ggtggtactg acgccggtat
    12901 ttgtcggatc ggtggtggtt accgcaatgg acatagcttt ctcctttatt gaccgagcgt
    12961 aagggttttc agcatcatgc ttttcaccgt gttgagcact tcaacattgg cctgatagct
    13021 gcgtgacgcc gacatggtgt taaccatctc tccgacaaca tcaacgttcg gcatttttac
    13081 gtagcccttt gcatccgcca gcggattacc cggttcataa accagtttgt ccggggcctg
    13141 actttctata acatcggcaa cctttacgcc gcctgtcgca gcacctggtg cagcgttaac
    13201 ctggaatacc acctgttttg cccgatatgg ctgtccatcg ggaccggtca cgctatcagc
    13261 attcgccaga ttactggccg ccacgttcag gcgctgggac tgggcagtta acgccgaccc
    13321 ggcgatatca aaaatattca gcagtgccat ccgttaattt ccgctctgta aaacgttcat
    13381 catgcctttg atttgcccgc tcaacgcact aaggctcatc tggtattgca gttctgcggt
    13441 aggaggcgtc agcgcctgcg ccggaatgtg ttgcgttgag gtcatcgtca gagcaaccac
    13501 actggttgca tcccgtccac gttgcatgac ttttttaagt tcactggcaa aatcgatatc
    13561 gcgcgcctga taaccaaggg tatcggcatt ggcgatgttt gctgccagca cttcctgacg
    13621 ctgggcgcgc agattgagcg cctcttgttg aaaacgtaag gcggcgtcga gcttatcgag
    13681 catatctcct ccgcaggtat caaaattctg ccatcagctt aaatgccttt acgcgcgcgt
    13741 tatcggcgga ataaacgcaa aatgggtcgc tatttatgcc gttgatgacc attggggacg
    13801 ggtacaattc acgttgtaga aatagctggg gggcgaaaat gctggcaata aaacgtagcg
    13861 tggcgatcat cgcgatactg ttcagtccgt taagtgcggc gagcaatctc acatcgcaat
    13921 tgcacacctt ttttagcgcc cagctcgtgg gggtaagtga tgaggttcgt gtttctattc
    13981 gtacagcacc caatctacta ccgccgtgcg agcagccatt gctttcgatg agcaataatt
    14041 cccgcctgtg gggcaatgtg aatgtgttgg cacgctgcgg taacgacaaa cgatatttac
    14101 aggttaatgt gcaggccaca ggaaattatg tggttgccgc gatgcccatt gtgcggggag
    14161 gaaagctgga agctggcaat gtcaaactaa aacgcggacg actggatacc ctgccaccgc
    14221 gtacggtgct ggatatcaat caacttgttg atgccattag cctacgcgat ctatcacccg
    14281 atcaaccaat ccaattaacc cattttcgcc aggcatggcg ggtaaaagcg ggacaacgcg
    14341 tcaacgtgat cgccagcggt gacgggttta gcgccaacgc agaaggtcag gcgctgaaca
    14401 atgcagccgt cgcacagaat gcgcggatgc gcatggtatc gggactggtg gtcagcggcg
    14461 ttgttgatgc agatgggaat attcttataa acctgtaagc tgttaaagat tacccgtccc
    14521 ttgccgataa ataagcaaca catgataaaa gcgccctcaa tgaggaataa accatgagta
    14581 ttgatcgcac ttcgcctctg aatcccgtaa gcaccgttca accgcgcgaa accactgacg
    14641 cgccggtaac gaacacccgg gcggcaaaaa caaccgactc caccagcacc agcaccagca
    14701 ccagcaccag caccagtgtg acgttaagcg acgcgcaagc aaaactgatg caacccggca
    14761 gcagtgatat caatcttgaa cgtgtcgaag cgttaaaact ggcgattcgt aacggtgaac
    14821 taaaaatgga catcggcaaa attgccgatg cgctgatcaa cgaagctcag caagacttgc
    14881 agagtaactg atcgtatgac acgtcttgca gagatccttg accagatgtc cgctgtgctt
    14941 aacgatctca aaacggtaat ggatcaagag cagcaacatc tctctatggg gcagatcaac
    15001 ggcagccagt tgcaatggat tacagaacaa aaaagctcac tgctggcgac gctggattac
    15061 ctcgaacagt tacgcaagaa agaacccaat acagcaaata gcgttgatat tagtcaacgc
    15121 tggcaggaaa ttactgtgaa aacgcagcaa ctacgccaaa tgaatcaaca taacggttgg
    15181 ttactggaag gacagattga gcgcaatcaa caggcgctgg aaatgttgaa accgcatcag
    15241 gaaccgacgc tatatggggc gaacggtcag acctcaacaa cccatcgcgg cggtaaaaag
    15301 atttcgatct gaagattatc tccggcctgc actgcaggcc ggaatgcatt gttacaccgt
    15361 ccggcgggca aattctttaa ctttgaagcc cagtaccgcc agtgcagcga agtacgcggc
    15421 aatccccgcc agcacgaccg ccattaaacg cagtaagcgc cagggcatgg tacccaatga
    15481 ccactccggc atgatatgta acatacctaa aagcacgcca gacatcacca gtaccgccac
    15541 caccagacgc aacagaaacg ccatccagcc gggttgcgga gtaaagattt tctgcttacg
    15601 caactgccag taaagcagcg aagcattcag acacgccgcc agaccaatag aaagtgacag
    15661 cccggcatgt ttcaacggac caataaacgc caggttcatc aattgcgtta aaatcagcgt
    15721 aacgatggca attttcactg gcgttttaat gtcctggcgg gaataaaagc caggagccaa
    15781 cactttcact acaatcaggc caatcaaacc caccgagtag gcaattaacg cccgctgggt
    15841 catcagcgca tcaaacgcgg taaatttacc gtactggaac agcgaaacgg ttaacggacc
    15901 tgaaagaatg cccaacgcaa ccgcactcgg cagcgccaac aggaaacaaa gacgcaaccc
    15961 ccagtccatc aaacggttgt attcatcatg attgccactg gcaaaacttt tcgacagcga
    16021 cggcagcaaa atggtgccaa gcgccacgcc cagcacaccg gacggaaact ccattaagcg
    16081 gtcggcgtaa tacatccaag acaccgaacc ggaagcaaga aacgaggcaa aaatggtgtt
    16141 gatgattaag gagatctggc tcacagagac gccaaggatc gccggtccca tctgtttcac
    16201 cacgcgcatt gctccggcat cgtggaagtt aatgcgcggc aggaccagca tgccgatctt
    16261 cttcaggtgc ggtagctgat acaccagctg caggatgccg ccgaccgtaa cagcccacgc
    16321 cagcgccagc accggtgggt taaagtacgg tgcggcaaac agcgcgaaac caatcatgct
    16381 gatgttaagc agtgttggcg caaacgccgg aatcgagaag cggttccacg tattcagaat
    16441 cgctcccacc agcgacgcca gggagatcag caagatatag ggaaaggtaa tctttagtag
    16501 ctggctggtc agggcaaatt tgtcagctgt atcagcgaag cctggcgcgg tcaccatgat
    16561 cacccacggt gcggcgagca tgccagcgac cgtcacaacc gccagcgcaa gtgtcagcag
    16621 gccagaaaca taagagacaa agacccgcgt ggcgtcttca ccctgcttac ttttatattc
    16681 cgccagaatc ggtacaaatg cctgggaaaa tgccccttcg gcaaagatac ggcgtaacaa
    16741 gttaggaagt ttaaaagcga cgaaaaaggc gtcggttgcc atccctgcgc caaagattct
    16801 ggcgacaatt gcgtctcgtg cgaagccaag cacacgcgaa aacatggtca tcgagctgac
    16861 ggcggccagc gattttaata aattcatcgg tgttctaatc cagaccaacg ggcaaaacgc
    16921 ctgcaagaca ggcgctgaaa gaggcgaata gtctacctgg attatggtga attgctaccg
    16981 ccagatgtta cagggtttat tcactcatcg catcgcgcca gatcttgtca acgatacgtt
    17041 gcgccagcac ggcctattcg ccggcggttt gcggaactgt ctgattttgc acacattcaa
    17101 tgaagtgccg cgcacagccg acaaatccac gttgttcaag agtgctctgc caaccaggaa
    17161 tcggtttatg cactacgccc tgcccgcgct cctcacgcca ttcgcgcata tccgtaatgt
    17221 cgatgagcgc accgtcagtc acggcctgca cggtttcacg ctgacttccg gcacggcgat
    17281 gcatacaggt ggtgatctgc aaaggaccgg ccgaaaaatg gtgctcggca aacagcattt
    17341 cgccagcgtc gttagtcagt agcgtaccgc catccagaga ggctttgccg cccgacaacc
    17401 acagcgcggt atccaccaca tgcagataat catccagcaa cgtgaaataa agatcgtgtg
    17461 gcccgacact attgctacga tgtttatcca ttcttagcga agctgcggta gcgagttgcg
    17521 tttttaactc accgtagagt ggtgcgaaac gacggttaaa accgaccatc aacgtcagtt
    17581 ttttccgcgc cgccagttcc accagccgtt cagcatcgcg cagattttct gccagcggtt
    17641 tatcgacaca gacatgtaca cccgcattga gtaacgtact gaccacgtca aagtggctgg
    17701 cggtgctgga atgcacaaaa accgcatcgc aactggcggc aaggctggat aacgaatcgg
    17761 cataaggaat gcgccagctt tcacaaattg gcagggcttt cgcgcgcgta ggcgaccagg
    17821 ctccttgtaa catccagtca gacgctgccg ccagcaccgg taaccacgct ttttgcgcaa
    17881 tgccgcctaa tcccacaacg ccgatacgta attttttcac tttaatctcc cagatgggcc
    17941 agcaacgaat caagacgctg tttcagttct gccacttcga tttccagggc ttcgacgcgg
    18001 gcctgtaaat caccatcaac cgcgttcgac atatccgtta ccgccggctg atcctctacc
    18061 tcaccactga aaagatgcat gtagcggctt tcgcgtttac ccggttcgcg ggccagacgc
    18121 accacaaaag gaccatcttc gcgatttgcc agttgttcca gcgtcgactc caattccgcc
    18181 atatcgctga attcatacat tcgcgcggcg cggctgcgca gttcacccgg cgtctgggca
    18241 ccacgcaata acaacgtggt gattaacgcc acttccgctg cgctcagttt cagatcgcca
    18301 aattctgaat tacaaaaacg ttgttcatat ttggtgaccc gattaccaaa gccactcacc
    18361 gtgcgcagat aatggcgttt gaccagatta tccagttgct cctgcacttc agattcactc
    18421 agattcatga ccggttcacg gttcgttttc tgattacagg ccgtgactac accattgact
    18481 gagagcgggt attgctccgg cgtggtcacc tgcttttcca gcaagcaacc aatcacgcga
    18541 gcttcaaggg cagtaagttg atatttcatg agattctcct tagcggccgg gcgtccagtc
    18601 tggggtagtt aatgccgtca gtacgtgatc gcgccattgt ccatcaatca acagatagtc
    18661 tttcgcatag ccttcttttt caaaacccag tcgcgccagt aaatcaccgc tgcgtttatt
    18721 gtgcggcata taattagcca taatgcgatg aatatgttgg gtgcgctgca tataacgaat
    18781 ggctgcggtc agggcttcaa acatgagtcc tttgccctgc catttttgcc caatcgaata
    18841 accgagatag caggcatgaa aagagccacg aacaacattg gaaaaattgg caacgccaat
    18901 aatctctttt tcgtccgggt cgaataagcc aaagtagaaa gctgaacctt gtttatgaaa
    18961 ttcgttaatc atccccagcc tggcctgcca gcctgatgga taacagtggc tttcgtcgcg
    19021 cactggctcc cagggcttga ggaaatggcg attctctgcg taataatccg caagacgcca
    19081 ggcatcacga tcatgcacca gacgcacgac cagtcggtct gtggttaagc gcacttttgg
    19141 cacgttactg cgatagccaa acattctata cctactcctt cccgtaacgt ctttaatacg
    19201 ctgtaagtat tactatacct gcgcaaccag accctgtgaa aagtccaaaa tgccattttc
    19261 tgcattattc acatatttga taaaaactct ctatcaaagc gacgttttga taaaaaaata
    19321 ttgtccccga agtgatggga aaagtcttag cggcaatgca gaatagaaag tgctcatctt
    19381 ttatttcccg ggaggggaaa tgtcccgcgt atcgcaggcg aggaacctgg gtaaatattt
    19441 cctgctcatc gataatatgc tggtcgtgct ggggttcttt gttgtcttcc cgctgatctc
    19501 tatccgcttc gttgatcaaa tgggctgggc cgccgtcatg gtcggtattg ctctcggtct
    19561 acgccagttt attcagcaag gtctgggtat tttcggcggc gcaattgccg accgctttgg
    19621 tgccaaaccg atgattgtta ccggtatgct gatgcgcgcc gccggattcg ccacaatggg
    19681 tatcgcccac gaaccgtggc tattgtggtt ttcatgcctg ctctcgggac tcggcggcac
    19741 gttgtttgat ccgccgcgtt cggcgctggt ggtgaaacta atccgtccac aacaacgtgg
    19801 tcgttttttc tcgctgttga tgatgcagga cagtgccggt gcggtcattg gcgcattgtt
    19861 ggggagctgg ctgttgcaat acgactttcg cctggtctgc gccacagggg ccgttttgtt
    19921 tgtgctgtgt gcggcgttca atgcgtggtt gttaccggca tggaaactct ccaccgtacg
    19981 cacgcccgtt cgcgaaggca tgacccgcgt gatgcgtgac aagcgttttg tcacctatgt
    20041 cctgacgctg gcgggttact acatgctggc tgtacaagtg atgctgccaa ttatggtcaa
    20101 cgacgtggct ggcgcgccct ctgccgttaa atggatgtat gccattgaag cgtgtctgtc
    20161 gttaacgttg ctctacccta tcgcccgctg gagtgaaaag cattttcgtc tggaacaccg
    20221 gttgatggct gggctgttga taatgtcatt aagcatgatg ccggtgggca tggtcagcgg
    20281 cctgcaacaa cttttcaccc tgatttgtct gttttatatc gggtcgatca ttgccgagcc
    20341 tgcgcgtgaa accttaagtg cttcgctggc ggacgcaaga gctcgcggca gctatatggg
    20401 gtttagccgt ctgggtctgg cgattggcgg cgctattggt tatatcggtg gtggctggct
    20461 gtttgacctg ggcaaatcgg cgcaccagcc agagcttccg tggatgatgc tgggaattat
    20521 tggcatcttc actttccttg cgctgggttg gcagtttagt cagaaacgcg ccgcgcgtcg
    20581 tttgctggaa cgcgacgcct gatttgatac tcccccctga ctcctccata ctgaaagtga
    20641 actgacagcc aaatggagga gtcacgtgaa gctatacatt tacgatcact gcccttactg
    20701 cctcaaagcc cgcatgattt tcggcctgaa aaatatcccc gtcgaattac atgttctgct
    20761 caacgacgac gcagaaacac ccacccggat ggtcggtcaa aaacaggttc ccattctgca
    20821 aaaagatgac agccgctata tgccagaaag catggatatc gttcactatg tcgataaact
    20881 cgacggcaaa ccgttactga ccggcaaacg ttcccctgcc attgaagagt ggctgcgcaa
    20941 ggtcaatggc tacgccaaca aactgctgtt gccgcgtttt gccaaatcgg catttgatga
    21001 gttttctact cccgccgcgc gcaaatattt cgtcgacaag aaagaggcca gcgcgggtaa
    21061 ttttgccgac ctgctggccc actctgacgg tctgattaag aatatcagcg atgatttgcg
    21121 tgcgctggac aaactgatcg tcaaaccgaa cgccgtgaat ggagaacttt cggaagatga
    21181 tattcagcta tttccgctac tgcgtaatct gacgctggta gccggaatca actggccaag
    21241 ccgcgttgct gattaccgcg ataatatggc gaaacagaca caaatcaatt tgttatcatc
    21301 aatggcgatt taatcctgac ccgccgcggc agcctgtatt cgcgggttgc cgccgttttc
    21361 agttttttct gctggcgatt ttatcgctgg tgacacatgc tgcgttgtgt caggatattg
    21421 acgcagattt catgtcgagg actaccatga acaagttttt atttgccgct gcattgatcg
    21481 tcagtggcct gctcgttggc tgtaatcaac tcacccaata caccatcacc gaacaagaaa
    21541 ttaaccagtc gcttgcgaaa cataataatt tctcaaaaga tatcggttta cccggcgtgg
    21601 ctgacgccca tattgttctg acaaacttga ccagccaaat tggtcgcgaa gagccgaata
    21661 aggttaccct aaccggagac gccaatctgg acatgaactc cctgttcggt agtcagaaag
    21721 cgaccatgaa actgaagctg aaagcgctgc ccgtgtttga taaagaaaaa ggtgcgatct
    21781 tcctgaaaga gatggaagtg gtcgatgcga cggtacaacc ggaaaaaatg caaacggtga
    21841 tgcaaacgtt gcttccctat ttgaaccagg cattacgcaa ttactttaac cagcaacctg
    21901 cttacgtcct gcgcgaagat ggcagtcagg gcgaagcaat ggcgaaaaaa ctggcgaaag
    21961 gcattgaagt gaagccaggc gaaattgtca ttccgtttac ggattaatga cgagggcgca
    22021 ttcgcgccct ttatttttcg tgcaaaggaa aacgtttccg cttatccttt gtgtccggca
    22081 aaaacatccc ttcagccgga gcatagagat taatgactgc accatcccag gtattaaaga
    22141 tccgccgccc agacgactgg caccttcacc tccgcgatgg cgacatgtta aaaactgtca
    22201 tgccgtatac cagcgaaatt tatggacggg ctattgtaat gcccaatctg gctccgcccg
    22261 tgaccactgt tgaggctgcc gtggcgtatc gccagcgtat tcttgatgcc gtacctgccg
    22321 ggcacaattt caccccattg atgacctgtt atttaacaga ttcgctggat cctaatgagc
    22381 tggagcgcgg atttaacgaa ggcgtgttca ccgctgcaaa actttatccg gcaaacgcaa
    22441 ccactaactc cagccacggc gtgacgtcaa ttgacgcaat catgccggta cttgagcgca
    22501 tggaaaaaat cggtatgccg ctactggtgc atggtgaagt gacacatgca gatatcgaca
    22561 tttttgatcg tgaagcgcac tttatagaaa gcgtgatgga acctctgcgc cagcgcctga
    22621 ctgcgctgaa agtcgttttt gagcacatca ccaccaaaga tgctgccgac tatgtccgtg
    22681 acggaaatga acggctggct gccaccatca ctccgcagca tctgatgttt aaccgcaacc
    22741 atatgctggt tggtggcgtg cgtccgcacc tgtattgttt acccatcctc aaacgcaata
    22801 ttcaccaaca ggcattgcgt gaactggtcg ccagcggttt taatcgagta ttcctcggta
    22861 cggattctgc gccacatgca cgtcatcgca aagagagcag ttgcggctgc gcgggctgct
    22921 tcaacgcccc aaccgcgctg ggcagttacg ctaccgtctt tgaagagatg aatgctctgc
    22981 agcactttga agcattctgt tctgtaaacg gcccgcagtt ctatggcttg ccggtcaacg
    23041 acacattcat cgaactggta cgtgaagagc aacaggttgc tgaaagcatc gcactgactg
    23101 atgacaccct ggtgccattc ctcgccgggg aaacggtacg ctggtccgtt aaacaataaa
    23161 aatcgtagct tcctgttgtc attaggttat tttacctgta taaataacca gtatattcaa
    23221 cagggggcta ttatgcgaat tgaagtcacc atagcgaaaa cttctccatt gccagctggg
    23281 gctattgacg ccctggctgg cgaactttcc cgccgtattc agtatgcgtt tcctgataat
    23341 gaaggccacg tatcggtacg ttatgccgca gcgaataatt tatcggttat tggcgtaaca
    23401 aaagaagata aacagcgcat tagcgaaatt ctccaggaaa cgtgggaaag cgccgatgac
    23461 tggtttgtca gcgaataata tgcagtgatt tttgtttttg ccgggtcgcc ccggcttttt
    23521 tattttactt acaaattttg agtacaaaat ttctacactt cctcaaaata attgcacaat
    23581 atgctaaaaa aatatgaatg acatgctgtt ttattgttca tataaatctt aaaagcagaa
    23641 atttatctgt tccccccttt aaaaattcgg tgaataccct tacttattgg tatactgaag
    23701 ttgcttcaga taaaaacgca ttgaacctcg aataacgttg tctagtaaca cgaattaggg
    23761 ggccatgatg gaaaaaaata atgaagtcat tcagactcat ccgctcgtag ggtgggacat
    23821 cagcaccgtt gatagctatg atgcgctgat gttgcgtttg cactaccaga ccccaaataa
    23881 gtccgagcag gaagggactg aagttggtca gacgctctgg ttaaccactg atgttgccag
    23941 acaatttatt tcgatattag aagcaggaat cgccaaaatt gaatccggtg atttcccggt
    24001 aaacgagtat cggcgtcatt aacatgacat gaccatccac ccaaaaggca cctcaccggt
    24061 gcctttacca tttctgggtt gtatatctgc attcagttaa ttactctgct taaaccatga
    24121 gagcagagag aaaaaaatga aatacgatct catcattatt ggcagcggtt ccgtaggcgc
    24181 tgccgccggg tattatgcaa cccgcgccgg tttaaacgtg ctaatgaccg acgcccatat
    24241 gccaccgcat caacacggca gccaccacgg cgatacgcga ttaattcgcc atgcttatgg
    24301 tgaaggcgaa aagtatgtcc cgttggtcct ccgcgcgcaa acgctgtggg atgaactttc
    24361 ccgccacaac gaagatgatc ccatttttgt acgctctggt gtcattaacc tcggcccggc
    24421 tgactccgca tttctcgcca acgtcgccca cagcgccgaa cagtggcaac tcaacgttga
    24481 aaagctcgat gcgcaaggga ttatggcccg ctggccagaa atacgcgtcc cggacaacta
    24541 catcggctta tttgagactg attccggttt tttgcgcagc gaactggcga ttaaaacctg
    24601 gatccaactg gcgaaggaag cgggctgtgc gcaactgttc aactgcccgg tcaccgcaat
    24661 tcgtcatgac gatgatggcg taactattga aaccgttgac ggtgagtatc aggcgaaaaa
    24721 agcgattgtc tgcgcgggaa catgggtaaa agacctgctc ccggagctgc ctgtccagcc
    24781 tgtacgtaaa gtatttgcct ggtatcaggc cgatggccgc tatagcgtga agaataaatt
    24841 cccggcgttt accggtgaac tgcccaatgg cgatcaatat tatggttttc cggcagaaaa
    24901 cgacgcgttg aagattggca aacataacgg aggccaggtt atccattcag cggatgaacg
    24961 tgttccgttt gcggaagtgg tcagcgatgg ttcggaagcc ttcccgttct tgcgcaatgt
    25021 attgccgggt atcggttgct gcctgtacgg cgctgcctgc acctatgata attcgcctga
    25081 cgaagatttt attatcgata ccctacccgg ccacgataat acactgctca ttaccggcct
    25141 gagtgggcac ggttttaaat ttgcgtcagt tttaggggaa atagctgccg attttgcgca
    25201 agacaaaaaa agcgattttg atttgacgcc attcaggctt tcccgcttcc aataatcatc
    25261 attacggcct ccagaatgag gccgttttta caggagtatt taatgcgtcg gctgttgcac
    25321 tatctcatca ataatattcg cgagcatctg atgctttatc tttttctctg gggattgttg
    25381 gcaattatgg atctgatcta tgtgttttat ttttagtttt ccgcactgac ataaactgac
    25441 aaatatttaa tctccctttc atttagcgtg aaaaattgaa tgagattatt cctgcttcta
    25501 cagcactcac cagacatctc tgatgctgaa cccactaaac ttatgaagat tctttcatta
    25561 ttaattcaaa attattgaaa taaaaataaa tatcattcaa tttgttattt ttgtgttgca
    25621 attcattctc cgacacgcca ttttctttct ctcgcaaatt cgtattggat gcacttatgt
    25681 cattcacaaa tacccctgaa cgctatggtg ttatatctgc ggccttccat tggctaagcg
    25741 caattattgt ctacggcatg tttactttag gtctgtggat ggtcacgctc agttattacg
    25801 atggctggta tcacaaagca cccgaactgc ataaaagcat cggtattttg ttaatgatgg
    25861 ggctggttat tcgcgttctg tggcgtgtca tatctccacc gccgggtccg ctgccgagtt
    25921 attcgcccat gactcgtctt gccgcaaagg ctggacatct cgcattgtac ctattgctgt
    25981 tcgccatcgg catcagcggc tatctgatct caactgccga tggtaaaccg atcagcgttt
    26041 ttggctggtt tgacgtcccc gcgacccttg ccgacgctgg cgcacaggca gactttgccg
    26101 gtgccctgca tttttggctc gcgtggagcg tcgtagtact gtccgttatg cacggattta
    26161 tggccctgaa gcatcatttc atcgataaag acgacactct gaagcgcatg ctgggaaagt
    26221 cgtcatctga ctatggagta taaaaaatga aaaaaagcct gcttggttta accttcgcgt
    26281 ccctgatgtt ctctgccggt tcagcggttg ccgccgatta caaaattgac aaagaaggtc
    26341 agcacgcctt tgttaatttc cgcatccagc accttggcta tagctggtta tacggcacct
    26401 ttaaagattt cgacggtact tttacctttg acgaaaaaaa tccggctgcc gataaagtga
    26461 atgtgacaat taacaccacc agcgtcgata ctaatcacgc cgaacgcgat aaacatcttc
    26521 gcagtgcaga tttcctcaat accgcaaaat atccacaggc aacattcacc tccaccagcg
    26581 tgaagaaaga cggtgacgaa ctggatatta ccggcgatct gacgctgaat ggcgtaacca
    26641 aacccgtcac gctggaagcg aaattaattg gtcagggcga cgacccatgg ggtggtaaac
    26701 gtgcaggctt cgaggccgaa ggcaaaatta agctcaagga cttcaatatc aagacagatt
    26761 taggtccagc ttctcaggaa gtggatctga ttatttcagt ggaaggcgta cagcagaagt
    26821 aagcgtgaaa tgttgccgga tggcacgcat ccggcaatga tatttattct gttggatcag
    26881 gaatgcccag tgttgtattc agacgtccac gagacttatt aaagatctta ttgccatttt
    26941 cacgtcctgc ccgacggcgt cgctgttctt ctggcggtaa cgcgctttct tcgcagcaaa
    27001 tctcactaca acaacctttg tatttttccg cgcatactgg acactgaata aacagcaggt
    27061 ggcagccatc atttttacag ttggtatggc tgtcgcacgg cgcgccgcac tggtggcaat
    27121 gcgcgataat ctcatccgat atacgttcgc ccatccgctc gtcaaaaaca aaatttttgc
    27181 caataaaacg caccggcaag ccctgctcgc gcgccttacg ggcgtattca ataattccgc
    27241 cctcgatatg ccagactttg ttgaatccgt tatgtttcat ccaagcactg gccttttcac
    27301 aacgaatgcc gccggtgcag tacatgacga tttttttatc tttatgtgcc tgcatcatct
    27361 cgactgcttt tggcagctgc tcacggaagg tatctgccgg aatttcgaac gcgttttcaa
    27421 agtgccccac ttcatactca tagtggttac
//
LOCUS       DAJVUY010000040        27401 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.040, whole genome shotgun sequence.
ACCESSION   DAJVUY010000040 DAJVUY010000000
VERSION     DAJVUY010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.040"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            4..435
                     /locus_tag="OQQ72_001534"
     CDS             4..435
                     /locus_tag="OQQ72_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011309.1"
                     /translation="MTMNLHTPTTAPKAAPATSVSPLEQSGSPKTKFPEIKTVKTAVV
                     KLISDIEGNLDQRLVYREAVEGLCQEAANRITQCMHSRSTGQTLRDLRELLSVTLDTI
                     IVVEFEGEQTRLNYGGRSAEDVIAMLKALHLEGRKAWLEVE"
     gene            complement(467..994)
                     /locus_tag="OQQ72_001535"
     CDS             complement(467..994)
                     /locus_tag="OQQ72_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HCS2011310.1"
                     /translation="MRKTTLLVLAAALCVPAFATAAPVLTAGFSPSDGRPALEIVLGA
                     INNARQSIDVAAYSFTSKPVATALAGANRRGVAVRVVADEKANSDRYTAVTYLINQGV
                     PVHLNGRYAIMHNKFMVIDGKNVQTGSFNYTASAVSRNAENVLLIEDAPQLAEAYQRE
                     FNRLWDEGIPLNALY"
     gene            complement(987..1733)
                     /locus_tag="OQQ72_001536"
     CDS             complement(987..1733)
                     /locus_tag="OQQ72_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein MobC"
                     /protein_id="HCS2011311.1"
                     /translation="MLISSYQERYARSTEKIRVLLNFLKEETYSDFQIIKLLFDFKSD
                     RPLYRLLEKVEKMGLIQKHVHESRASRISLWGITTDGLAVILTADDNIMPARFEPYRL
                     TGWSLDHHLDNQLVRLTLEKNGATGWINGDRSTFLSQYSVKHRPDGLISLPDGRLIAV
                     ETERRIKTKARYQSIMASHLLAISDKKWRYAFYVAPDEAKKRALKIIFDSIASVIVKN
                     QHVQLEAKHRDVFRFYTLDELKNLELDNYA"
     gene            complement(1748..3655)
                     /locus_tag="OQQ72_001537"
     CDS             complement(1748..3655)
                     /locus_tag="OQQ72_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraM recognition domain-containing protein"
                     /protein_id="HCS2011312.1"
                     /translation="MIFDKLNHLLSPIANAVLAFIAFLQAHQLALALLSGVMLPFIFS
                     AKHGGQEKPTFLQRILILLSMICFVFGSIAPVAVWFLQRIYGREDIASPPLLTWTMAL
                     LFTVAGFILHVVLRRLISPEFDKVKCGMVKKTSMERDRRTDVRRVKEILPVTTEYDPM
                     DYIDLNKGIFIGLSREGEPQYIPLKEWQTQHADIIGTTGAGKGVVTGILLYQSILADE
                     GVFVLDPKNDEWAPHLYKKACADAGKPFVLIDLNKQEYQMNLIDGITADHLEELFVAG
                     FSLAEKGEAADFYRIDDRKAARTAAQFVKDNPGATVRDIYNGDYVQGIGETIKAFHGK
                     TEELAMLNSINAPGGFALKEIFDKGGCCYIIGSMRNSKIITAQRMILVRLFQLAELRD
                     RVAGNIRPIAIFKDEVKYHLSKPALEGLGAARDKGVHILMAHQSIADLRDCPADLNGD
                     AVVGAVVENCKFKLVYKLQDPDTAEWIARMSGTILVDDESRKVTTTAVLTEKVDNERM
                     LRQAESYYIDSNMLQNLPKFVSYIFSQNALAFPSLISPLKVKKAPLELFTLPPVAVAT
                     VAEVKPVLDLDFDKTAPAVPAPDIIPVSATTTKKPSATPIPTPPVQPDEEWLMASQPA
                     PNDEIHSLLDL"
     gene            complement(4364..4756)
                     /locus_tag="OQQ72_001538"
     CDS             complement(4364..4756)
                     /locus_tag="OQQ72_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HCS2011313.1"
                     /translation="MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEH
                     IEQEKLRRQREEKRNELLALIESEGFSPTELVSTTPAKKSAKRKAKYQYFENGVHKKW
                     SGVGRVPVVIQQELDAGKPLESFLITTD"
     gene            complement(4753..6954)
                     /locus_tag="OQQ72_001539"
     CDS             complement(4753..6954)
                     /locus_tag="OQQ72_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase C-terminal repeat-containing
                     protein"
                     /protein_id="HCS2011314.1"
                     /translation="MRLWIAEKPAVASDIAKALGGNFTRHDGYAESATDIVSYCVGHV
                     LEMVPPETINPAYATWSLDTLPLKLYPVQLQPKASVAKQANTLVKLIRRPDIKMVVHC
                     GDPDDEGQLLVDEVLEFAGNTAPVKRALINDNTAPAVKKAINSLRDNSDFRGMYLKAL
                     MRSAGDAIFGFSMSRCYTLKARDKGYKGTISVGRVQTPVLGMIVRRWRDNQAHSEAFY
                     YQLAGQFISGTDVVCARWQTSEYAPVDDKKRLTDKAWGEGLARALAGKPASVLAAATD
                     RGKTTAAPLPFNLLRLQVYMNRRHKLTAQQTLDITQKLKDSKYITYNRSDCSYLSDEQ
                     FNDAPQVVAALKTLDVFNGLTTDTAQKSAAFDSKKVTAHTAIIPTTNMPDLSRLTDKE
                     KAVYLTIAQFYLAQFVAKKRYDESIAEIKCGDEMFKVSARKITDAGFTTFLNDAEEDD
                     EEDENSTSFEAISRLQTGATLTCREVVISEKKTKPLPLFTEATLLAALVRVADFVADP
                     RIKKLLKEKDKDKKDEHGGIGTPATRAAIIETLKTRDYITVEKGKFIPTAAGLALIDA
                     LPDSVTQPDMTAVWAEKQAAVETGEMTIERFIDGLYAEVSRLVESADIAISATEKHPV
                     KTALNRLAVKCPSCGSELVMTPKTCACTGCQFKIWLEVRGKKLTEKQAEKLIGKGKTD
                     VIKGFKSKKNDDTYSMIVTLKNAQTGELGFEYPPRDPLKGLNVSMPKELKL"
     gene            complement(6951..7259)
                     /locus_tag="OQQ72_001540"
     CDS             complement(6951..7259)
                     /locus_tag="OQQ72_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000212005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011315.1"
                     /translation="MATKTGFIAPPWPHVRGDSVSAASLISRIEKEAHRGCGLHYEIY
                     QYRALCELHDVLTSLSVRDAETFMTVAADHGFSLSDNDFQESRMMYFETMDEIRRDQE
                     "
     gene            complement(7235..7570)
                     /locus_tag="OQQ72_001541"
     CDS             complement(7235..7570)
                     /locus_tag="OQQ72_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000610141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011316.1"
                     /translation="MINQTVSINNFSGLLKDEELPAGDLQTVLLVLSEISQKQDHFQA
                     NTSELVQLAAQHSPTFQALPAERQSFFRSVLSMPVFFYTVPLSDDEAAEWEKLNDKDA
                     LQWQQKPDL"
     gene            complement(7597..7914)
                     /locus_tag="OQQ72_001542"
     CDS             complement(7597..7914)
                     /locus_tag="OQQ72_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000683352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011317.1"
                     /translation="MKHTVITAALLCALTSPAFAADGQNADPNDPCAMVLCLAGKLDG
                     SSPAECDPMYKNFMSIKKKKKGSFLPDHTAAARQKKLSACPSADSAIVGKIISKFGRM
                     NGW"
     gene            complement(8005..8406)
                     /locus_tag="OQQ72_001543"
     CDS             complement(8005..8406)
                     /locus_tag="OQQ72_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011318.1"
                     /translation="MMLPKLTGLTAIVVLLAGCSSPPEPAAVDWSQPAQPVTTTRPVW
                     EPNRLIVASPVTEGHWSQVLTRFEPGGIYPAAQWYAVAHASRAVVNAPDGQRFFAAKT
                     WLREGGYKGVVEFRPRSGCLTCDTSEIVFYR"
     gene            complement(8393..9442)
                     /gene="virB11"
                     /locus_tag="OQQ72_001544"
     CDS             complement(8393..9442)
                     /gene="virB11"
                     /locus_tag="OQQ72_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000342114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HCS2011319.1"
                     /translation="MDDKLTDTPSEGNVALSHLRDLLFGDYLSREGLTEIAINRPGEL
                     HTKINGAWEMHASPVTLRQCSSFARALAVWNNDTIDETSPILSATLPTGERCQIVVPP
                     ACERNTISITLRKPDYFQRTHQSYIDAGFYDRVQGTEKVESKDGELSRIYLSGNIPLF
                     MEKCVEYGKTLFVVGETGSGKTTYMKMLLHYIPETLRLITIEDNPELKFYSQKNYVHL
                     FYPADAGEGAIVTSDRLVRAIYRMNPDRPLLAEVRGREAWDALKLIESGHEGFMSSLH
                     AGSPRECISGLIDRCYEHPACRGMPVDVLLRKVLHCVDVIVSVDVHGNVRRMSDVYFK
                     PLHMQAMKESFNDAA"
     gene            complement(9446..10642)
                     /locus_tag="OQQ72_001545"
     CDS             complement(9446..10642)
                     /locus_tag="OQQ72_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HCS2011320.1"
                     /translation="MMNEQEDIKTAAELEAEARERARAEIDGDKPAAGAVPPGQPQVV
                     QHAKRRSRRSLVLAAISLVLLVIIATGGDYLMAKLKGDGSGKSASHEPESHATSPARE
                     RNNLGRDLNPLGQLADTTGQEKTTPTDTAAPPQASPPPLTFDKVSALADSAPTTASSA
                     PKSTSSSNVSPAGSASAPGSATPAGQSQDNGLARITGVKRLGLDPDLYIPADRHIPCA
                     MMQRFVSDVGGRFNCLISEDIYSASNAVRLIPAGTEARGLYRTGTLKNGQGRLFLAIT
                     ELRTPEPGRLVIPMVDSQAVGALGENGVAGWIDNHWLERIGNTLLLGTVQDFAAAASG
                     SSPGKDRNTDYTENTRAATAEMAKTLLENSINIPPTMYLNQGDVIGLVTGADIDFSDV
                     YRLRMR"
     gene            complement(10639..11532)
                     /gene="virB9"
                     /locus_tag="OQQ72_001546"
     CDS             complement(10639..11532)
                     /gene="virB9"
                     /locus_tag="OQQ72_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001045307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HCS2011321.1"
                     /translation="MNKVLMCALLLTAASAWGAATPRGSAYDSRMQNIPYNSQNTTVI
                     NTRAGYITTLVFDADEEVITATAGFPQGWTITPDRNRVGISPAPVKQPVTDADGKTVQ
                     KIFTPTQQDWQTNLFVTTTKRDYSLMLNVIDNDREAGNLAFVVRFSYPDDTRRQNDAA
                     RLARQQELQAAQEKERIQFALKKSTAPRNWNYTRRVAAGSESITPDFAYDDGRFTYLG
                     FSPQKLIPSPTVIVGGSEQVITPTFSTEGNYRVMVLRSLSPRFVLRYGSQVVGIENGS
                     YGKVTVANGSTVSPDVKLESK"
     gene            complement(11525..12211)
                     /locus_tag="OQQ72_001547"
     CDS             complement(11525..12211)
                     /locus_tag="OQQ72_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001293055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS2011322.1"
                     /translation="MSELTAKALSDSRSFENAILERDMRMKKAGWIVAALAGLLLVFA
                     LAALILLLPLKTTTVELYTLDRQTGRIERVTTVGEDKLDTSEVLNLSQTASYVKRREG
                     YNYFALQQDYRETQMFNSDEVNKEYLDWFNSPDAPDAVFQQAAYVVTVEVLSNVPSEG
                     TGSSMVEMLRIKRTIRKVKDNTETYDYWTVRMTYRYFPQKKMTASEREVNPFGFIVTS
                     YQRFKEKSDE"
     gene            complement(12204..12344)
                     /locus_tag="OQQ72_001548"
     CDS             complement(12204..12344)
                     /locus_tag="OQQ72_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000873539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011323.1"
                     /translation="MKYGITLLMLCLLAGCAQRNTQLPPVSGNPEPVNSPAIIQELTP
                     HV"
     gene            complement(12421..13428)
                     /locus_tag="OQQ72_001549"
     CDS             complement(12421..13428)
                     /locus_tag="OQQ72_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS2011324.1"
                     /translation="MSGIFVGLNSHIMEGFDSVLTSVAADTGGWMAHLFSIAVLSLYI
                     TWRAYQTMAGKLVRPFEEIVWDVSRMLIIMIFVTNAGGYLDLVSDAITGLRDGFSGDA
                     SIWARLDTVWEKAQALGEKLYSYDDSTYVALKGTLAQFLVWAGVMLLVGITAIINLIA
                     ELVMLLMLATAPIFIYCLMWSWFRDMFSNWLRIILGCILTSLFSGIALTVVMDYLDYI
                     LAGATKASDANYLTLAVQVFLGTAGAAAVMVLTYKLAEALAGASAQGAAQALAASGVG
                     SARQSASSAAGAVGDKASQNLNSTGSATASSASTASRATGDARSRSRAAVQRMQERYQ
                     R"
     gene            complement(13446..13730)
                     /locus_tag="OQQ72_001550"
     CDS             complement(13446..13730)
                     /locus_tag="OQQ72_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HCS2011325.1"
                     /translation="MKLKTLTFIVLASVAALTGCEDKTSVDWYMAHHDDMLAKYRECI
                     FNHNFVPTDCQNARSALHREKAKPDVAEGYKQILKDLDKARVQEPIADLN"
     gene            complement(13742..14458)
                     /locus_tag="OQQ72_001551"
     CDS             complement(13742..14458)
                     /locus_tag="OQQ72_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000770034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS2011326.1"
                     /translation="MKLKTTLTALTVALCLFHVPAQAGIPVFDEVANASNIQQWAEKL
                     QQWQQTVQHYQSQMNAYKQQLATATGIRDVQAFLNQAKNLTADIKNLKNRGISLNDLL
                     TGSGGSYAGELNRLYDKYKLFDNCPENASEAYRDSCKQMLLNQAVSVEDTSDIQEKIS
                     DTLSDISNLASRIENAKDSKESQDLANVVSARSIQLNALTTQWEMSVKQSEMRNQLLA
                     EQRRKAQAEQMRTAPIADLN"
     gene            complement(14477..17227)
                     /locus_tag="OQQ72_001552"
     CDS             complement(14477..17227)
                     /locus_tag="OQQ72_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000153996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HCS2011327.1"
                     /translation="MTILNKALTRPAALWGVPLVPLLFTLCILTLAAVWSRFYWLLLL
                     LIPAFIELRRLAKEDIHFFDLKLLAFKTRGNRAATRHFGTKALVANQYDAIDVTEFIK
                     HMRLNESIPLSRYLPWSSHLHEQVVKNKKGDFVSTWEIGGIIFECEDEHYLATLDMQL
                     NNVIRSFEGLPVTFYTHLVSDEFTDTLECESGIPFSDEIARLFYASREGKPFYQRRLF
                     FTVCFNPHTGIERATMKQKSLGERKTLLDNALQVMQEHRQAIGTALSRYAARPLGTYE
                     ENGHVFSSQLAFYNFLITGRWQKVRVTRTPFYDVLGGTDIFPSTDIGQVSHTDGQSYF
                     RGLEIKDYSTETITGLYDSLLYARCRYVFTQSYTCMGKDEARGCIRTIEKRLKSAEDD
                     AISQQEDLKVARDMLQSGIISFGKYHQTLIVSAPTSEQVIRDTNTLADTLKDLGFIMT
                     LSRESLSAAYLAQLPGVYHLRPRLVPVSSLNYAEMVSFHNFHPHKRDGNAWGEAIAVV
                     PTPSGGCQYVNLHNSQADVDEFSEKPPGNTMLLGSTGTGKSTLLMMFQHLMQKYRRPE
                     SFAPGATKKRFTSVVFDKDRSAEMSIRLQGGSYFRFRSGEKTGLNPFALAPTKRNRNF
                     LKKLMRMMCTRDGKPLDPRDEERLSEAVDTIMLDYPPELRRNGITRMLEVLHEAPTKD
                     ARMNGLRIRLQQWAQGGEFGWVFDNDVDTFDIDNIDNFGIDGTEFLNDKDVRSPLTFY
                     LLYRVTSLLDGRRLVIFMDEFWKWLQDPEFSKFALDMLKVIRKLNGIFFPATQSPEEM
                     CKHEISAAIIEQCSTRIFMANQQAKEYDYVDMLRVPKAVYDIVTTLDPYARQMVIMKS
                     PLRRGDVRPYIAQITLDLSGLGRYTKLLSASADNLKIFDEIWQEGMKPEDWKDEMLRR
                     AV"
     gene            complement(17237..17536)
                     /locus_tag="OQQ72_001553"
     CDS             complement(17237..17536)
                     /locus_tag="OQQ72_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HCS2011328.1"
                     /translation="MTLRTIKTAATRLIAAFSALSAVPAMAASADQAFQKGSDAINWV
                     FLGLTGMSVVTISCAVAFIAYKMLVDGKAWHDLQRVFWAGVLLAGASGFGAYFAA"
     gene            complement(17547..18209)
                     /locus_tag="OQQ72_001554"
     CDS             complement(17547..18209)
                     /locus_tag="OQQ72_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS2011329.1"
                     /translation="MLTTAALFQLAMQCAPAVHPDTIHDITRTESGLNPYAIAEIVPV
                     KGGRSRVISHLPSSKDEALKIVEAIKQKKHRYSVGLMQITSTNFPQFGVSAESMFNPC
                     DNMTVAAKIITDCYQRGGTLQRALSCYYSGNFETGQRPESAFGNTSYVQRIGYVVPST
                     RAEQQTASPSSGEAPAVPSDNTVYPDSVIRGVIPAPDTTPTSIAAYPPHVVRGGLAVS
                     SD"
     gene            complement(18212..18427)
                     /locus_tag="OQQ72_001555"
     CDS             complement(18212..18427)
                     /locus_tag="OQQ72_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011330.1"
                     /translation="MPDITPAPASLLEAVFTPMTEYTHNVYSVKGDRLAMTLTKIGVA
                     QANSQGDIQLFINPDCATGKVLLYRKD"
     gene            complement(18420..18728)
                     /locus_tag="OQQ72_001556"
     CDS             complement(18420..18728)
                     /locus_tag="OQQ72_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011331.1"
                     /translation="MSMQTVRRKALRQNPYSTLGKPPLRSSRDRITRAINGTWSLREL
                     PDNVRELLIERAALRAEITTLTVKAQGLKKSDVSVLIADRLRRIDAITSLLENRKCNA
                     "
     gene            19042..19956
                     /locus_tag="OQQ72_001557"
     CDS             19042..19956
                     /locus_tag="OQQ72_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS2011332.1"
                     /translation="MLEMFEKIEKKYWQDKIKKISKFRVIKMQDLDDAKVIEVLAKVL
                     TKKGISKVKHNSYISKVLQITTSAGYKKLNGATKWEVQQLIKVVQSVGMDMIEFFRIY
                     YEDNKEIQDAIWNDGRSEHSCKVCLYPEGSEVNTEYSALKVADQWNIFPTNDLKDELL
                     YESKRSIESIVINPKVISSTKYRIALLDDDANITESLKEILSNDYYQVDTYDNLKKLT
                     QAVATNPYDAYVLDWIIGDETSFKLVKAIRSSKNKNAMIIVLTGQLSGIKDDEIVKSI
                     HDYDIVGPYEKPIKSGIIKSNIEKYFAR"
     gene            19960..20943
                     /locus_tag="OQQ72_001558"
     CDS             19960..20943
                     /locus_tag="OQQ72_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011333.1"
                     /translation="MRNLLEYSGSLISNDSLIVAPYDCQKLSYENILPLNNSLIKNWN
                     IQKFSSDYSEIEHLNVINGMGVTLGDSIVGISVLSAIKKKNPKIKIKLIRPETAPSYV
                     EELYELASSVIDELHYMPFHIQKLPCTALNIDVGNQLYSPDFHIMEMHDYFIQGLGVK
                     LDDVNHNELSNKWLGNIDLGAPVFENYTLFAPIASTKIRSIPSKFYYDIVDMLSRREG
                     KTVLGFVDVNHKNYINISKYSPHTKDFIALIKYASNVYTCDSSALHIAAGFGVPTECV
                     FNTIPPELRTKYYSKCKSIYVGNKRLEKIQSSEDFQLVKMVENNYREYLYG"
     gene            20936..21424
                     /locus_tag="OQQ72_001559"
     CDS             20936..21424
                     /locus_tag="OQQ72_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HCS2011334.1"
                     /translation="MVKIISFLSLMLLSISAYSNIGDIVIDGSIANANSDKGYVITEK
                     QFDSFPRDTIVTTTPWTPTGKKVKFKGVDLSYVLKLAGANGAKLKFHALNDYEIIVDM
                     NDVEKYNILLATEMDGKRLQIRDFGPYFLVYPLDEHYIELNTPHYLARFIWQIDKITV
                     LK"
     gene            21421..23139
                     /locus_tag="OQQ72_001560"
     CDS             21421..23139
                     /locus_tag="OQQ72_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HCS2011335.1"
                     /translation="MKKNFFIILVALLLLIAFTVSSVVKYTSLLSEKNLYTVAGTQEN
                     YGFSVAKFIIQLNELYTLINSDNTIDDVRLKFDILYSRLNVIYVKSEATAPLYKQQGY
                     EETIDSINKKLEDIDGLLSHNHPDYKKISTIIADIKPLTKTVTNLADMAEIAQRNDAL
                     KDFRSKRQQLWTLLFITGGLISLLLFVLFIYISKINRLLLSERAAFASKNAFLGMVGH
                     ELRTSLQAIVSIIDVVTNNLSGGIKSGQIERLETAVSKMERQLNDLAEFAKIDNGSVE
                     IKNTYNSLQAIVTNAVQDCIAIYEKKDVTVKIKNNNDAVIFTDALRLNQVIENLTSNA
                     IKYTERGEVNVDYFIEKGKVLNIVISDTGKGIPKDKLKFIFKPFTRVVDSKSTVPGFG
                     MGLAIVAGIIRLLKGTIHISSEVNVGTTVTVRIPIKLGDSSLATAEVSASAPGDVFGV
                     LSLLVIDDNEMACSSLSSLLTNAGYIVEATTSPERALEKLLRKPYDVVLSDLQMPGMT
                     GDELYATVSSSQNPNRSTPFIFISAYSDAHSIGQAPLLTKPVRLKDINLKIHEVMSNQ
                     GRVKSE"
     gene            complement(23998..24355)
                     /locus_tag="OQQ72_001561"
                     /pseudo
     CDS             complement(23998..24355)
                     /locus_tag="OQQ72_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            24547..25524
                     /locus_tag="OQQ72_001562"
     CDS             24547..25524
                     /locus_tag="OQQ72_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000600827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2011336.1"
                     /translation="MILIPDDEPELSLPAASEEFLPALSGENAPVSPARAYLLSLNSH
                     RSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGRATATVNTYLSA
                     LKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRALFAVCEADRSCL
                     GARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGAWQRL
                     QIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKCSPHDLRR
                     TFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDRLNLI"
     gene            complement(25572..25835)
                     /locus_tag="OQQ72_001563"
     CDS             complement(25572..25835)
                     /locus_tag="OQQ72_001563"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011337.1"
                     /translation="MLPEQHAAEARYPIPVEDFHFSIFTAVNNQTVMTSSAEIVLVIE
                     GTATLSHASGESLLLHVGLSAFIPASIGRWLLTTTGKVCRVSC"
     gene            complement(25870..>27401)
                     /locus_tag="OQQ72_001564"
     CDS             complement(25870..>27401)
                     /locus_tag="OQQ72_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Tn3-like element TnAs1 family transposase"
                     /protein_id="HCS2011338.1"
                     /translation="RQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLL
                     DEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITEL
                     LMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLS
                     WLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVN
                     PKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTA
                     GFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLIGGTLNIKHVRAHW
                     DDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVEL
                     RRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVY
                     LERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGK
                     P"
BASE COUNT         6084 a         7229 c         7617 g         6471 t
ORIGIN      
        1 accatgacga tgaacctgca caccccgaca accgccccta aagctgcacc ggcgaccagc
       61 gtatccccgc tggagcagtc aggctcccca aaaacgaaat ttcctgaaat caaaaccgtc
      121 aaaacggcgg tggttaaact gatcagcgac atcgagggca acctcgatca gcgtctggta
      181 tatcgcgagg ccgtagaggg attgtgccag gaggcggcca accggataac ccagtgcatg
      241 cattcacgca gtacagggca gacgctacgt gatctccgcg agctgctgtc ggtgacgctg
      301 gacaccatta tcgtggtgga gtttgaaggg gagcagaccc gtctcaacta tggcggacgt
      361 tcagcagaag acgtgatcgc catgctgaaa gcgctgcatc ttgaaggacg caaagcctgg
      421 ctggaagtgg agtaaaaaaa aagccccgtc cgcagacggg gctgattcag tacagggcat
      481 tcagcgggat gccctcatcc cacaggcggt taaattctcg ctggtacgcc tccgccagct
      541 gcggcgcatc ctcgatcagc agcacgtttt ccgcgttgcg cgaaacggcg cttgccgtgt
      601 agttaaacga cccggtctgg acgtttttgc cgtcgatcac cataaacttg ttgtgcatga
      661 tggcgtaacg gccgttaagg tgcaccggca cgccctggtt tatcagatac gtcacggcgg
      721 tgtagcggtc gctgttcgcc ttttcgtcgg ccaccacgcg cacggccacg ccgcgccggt
      781 tagcaccggc gagcgccgtc gcgaccggct tactggtgaa gctgtaggcc gcgacgtcaa
      841 tgctctgcct ggcgttgttt atggcgccga gcacgatttc aagagcaggg cgcccgtcag
      901 acggcgaaaa acccgccgtc aggacgggcg cggcggtggc gaacgcgggc acgcagaggg
      961 cggcggccag caccagaagg gtggttttac gcatagttgt ccagctccag gtttttcagt
     1021 tcatcgaggg tgtaaaagcg gaaaacgtcg cggtgttttg cctccagttg cacatgctgg
     1081 tttttcacga tcacgctggc gatgctgtcg aaaataatct tcagggcgcg ctttttcgcc
     1141 tcgtccgggg cgacgtaaaa cgcgtaccgc cattttttat cgctgatagc cagcaggtgg
     1201 ctcgccatga tggactgata gcgcgccttt gttttgatac gtcgttcggt ttcaacggcg
     1261 atcagcctgc cgtccggcag gctgataagc ccgtcgggac ggtgtttgac gctgtactga
     1321 ctgaggaacg ttgaacggtc gccgttaatc caccctgtcg cgccgttctt ctccagcgta
     1381 aggcgcacta gctggttatc aaggtgatgg tcgagtgacc agccggtcag gcggtagggt
     1441 tcaaagcggg cgggcattat gttgtcgtcc gccgtgagga taacggccag cccgtcggtg
     1501 gtaatgcccc acagggatat tctcgacgcg cgggattcat gcacgtgctt ctgaatcagc
     1561 cccattttct ccaccttctc caacaaccgg tagagagggc ggtcagattt aaaatcaaaa
     1621 agcagcttta tgatttgaaa atcgctgtag gtttcctcct tgagaaaatt cagcagtacg
     1681 cgaatttttt cagtgctgcg tgcataacgt tcctgatacg acgaaataag catagaaact
     1741 ccttatttta taaatccagc aacgaatgta tttcgtcatt tggagcgggc tgtgatgcca
     1801 tcagccactc ctcgtcaggt tgcaccggcg gagtgggtat tggcgttgct gagggttttt
     1861 tggtggttgt tgcgctgacc ggaataatgt caggtgccgg aactgccgga gccgttttat
     1921 caaaatccag atccagcacc ggtttaactt ctgccaccgt agcgactgcg accggcggca
     1981 gggtaaacag ctccagtggg gcttttttaa ccttgagcgg tgagattaac gacgggaacg
     2041 cgagcgcgtt ctggctgaag atatagctga cgaacttcgg caggttctgg agcatattgc
     2101 tgtcgatgta atagctttcc gcctgccgaa gcatgcgctc gttatcgact ttttctgtca
     2161 gcaccgccgt ggtggtgact ttccggcttt catcatcgac taaaatcgtg cccgacatgc
     2221 gcgcaatcca ttcggcggtg tctggatcct gaagtttata taccagctta aacttgcagt
     2281 tttccacaac cgccccaacc acggcgtcgc cgtttaaatc cgccggacag tcgcgcaggt
     2341 cggcaattga ctggtgcgcc attaatatat ggacgccttt atcgcgtgcc gcgcctaacc
     2401 cttcgagcgc cggtttggac aggtgatatt tcacctcgtc cttaaagatg gcgatggggc
     2461 ggatattccc cgcgacgcgg tcgcgcaatt ccgcgagctg gaacaggcga actaaaatca
     2521 tgcgctgcgc ggtaatgatt ttagagttac gcatcgaacc gatgatatag cagcagccgc
     2581 ccttgtcgaa aatctccttc agcgcaaaac cgcctggcgc gttaatgctg ttgagcattg
     2641 ccagctcctc ggttttaccg tgaaaggctt taatcgtctc gccaatgccc tgaacataat
     2701 cgccgttata aatatcccgc acggttgcgc ccggattatc cttcacgaac tgcgccgccg
     2761 ttctcgccgc cttgcggtcg tcgatacggt aaaaatccgc cgcctcgcct ttttccgcca
     2821 gactgaaacc ggccacgaat aattcctcca gatggtcggc ggtgataccg tcgataaggt
     2881 tcatctggta ttcctgttta ttcaggtcga taagcacaaa gggttttccg gcgtccgcgc
     2941 acgctttttt atacaggtgc ggtgcccact cgtcgttttt ggggtcgaga acaaaaacgc
     3001 cctcgtcggc gaggatgctc tgataaagca gaataccggt tacgacgcct ttaccggcac
     3061 cagtggtgcc gataatgtcg gcgtgctggg tctgccattc ttttaacgga atatattgcg
     3121 gctcaccctc gcggctcagc ccgataaaaa tccccttatt cagatcgatg taatccatcg
     3181 gatcgtattc tgtggtgacg ggtaaaattt cttttacccg gcgaacgtcg gttctgcggt
     3241 cgcgctccat gctggttttt ttcaccatgc cgcatttgac cttatcaaat tcaggcgaga
     3301 tcaaacgccg taaaaccacg tgcagaataa aaccggcgac ggtaaacagt agcgccattg
     3361 tccaggtaag cagcggcgga ctggcgatat cttcccggcc ataaatgcgc tgtaaaaacc
     3421 agacggccac tggcgctatc gagccgaaaa caaaacagat catggaaagc agaattaaga
     3481 tcctttgcag aaacgtcggc ttttcctgac cgccgtgttt cgcagaaaat ataaaaggca
     3541 gcatgacgcc ggacagcagc gctaacgcca gttgatgcgc ctgcaaaaag gcgataaagg
     3601 ccaggacggc atttgctatc ggcgacagca aatgattcag tttgtcgaat atcacgatat
     3661 tctccttcac ttaaattcgg tcagcaccat cggtcagtca gaacggtcac aggttgtgat
     3721 cgttctgact gaccgattcc atgctgcaaa agaagtggcc gctaagcggc catgatcgca
     3781 ggaggtacac tcccgcgatc taacggcgtg cggcattacg cgcgggctgg acgcccttac
     3841 tgcatgtcgc atgggggtaa tgtcctggct gaacgcccgg ccaaaacccc caaggtcaaa
     3901 agaggccaca ccgtcgcgcg ctacgcgcga ccacccccta aaagacgcct gttttagccc
     3961 ttttcttcgc cttgttcgtt cctcacaaga tgaattaaag ggaaactagg ctttttaggg
     4021 ggtggtcgcg ccacgctacc ggcttttggc cggagactta ggcacgacgg tgtggggggc
     4081 aagcccccca aataaaccga cgcgtgggcg cgtctttttg ctcgctgggg cggcaaaatt
     4141 tattcggccc cccccggctt ttttcggctc acttggggtg agcgctcaaa aagtggaatc
     4201 ggcgacgcaa attagcaatt tcttcgaaat tgaatttact cgcctcctgc cacttcgcag
     4261 actcaggcgg cctgtcgatt agcaattttt tcaaaattga atcgccatgc tcgccagtct
     4321 tcgaagcccg aaaagccagg tcaaaaccga ccctgtgccg ttgttagtcg gtggtaataa
     4381 ggaaggattc aagaggtttt ccggcgtcaa gttcttgctg aattacaacc ggcacgcgtc
     4441 cgacgcctga ccatttttta tgcacgccgt tttcaaaata ctgatattta gctttgcgtt
     4501 ttgccgactt tttggcggga gttgtactaa ccagctctgt cggtgaaaag ccctccgatt
     4561 caatcagcgc cagcaattca ttgcgctttt cttcccgctg tcggcgtagc ttttcctgct
     4621 cgatatgctc tgcgcgtttt tcatcaagcg ctgctgaaat acgtgcactc agcatctcca
     4681 gaaaggcaaa atcactttca cgtaaaaact ttttcagcgc gcgctctgag gttaattcgt
     4741 cctggatacg gttcataatt tcagctcctt cggcatagat acgttcaatc ctttcagcgg
     4801 atcgcgtggt ggatattcaa aaccgagttc cccggtttgc gcgtttttca gcgtgacgat
     4861 catcgaatag gtgtcgtcgt ttttcttcga tttaaaacct ttaataacgt cggttttgcc
     4921 cttgccgatt aacttctcgg cctgtttttc cgtcagcttt ttgccgcgca cttccagcca
     4981 tattttgaac tgacagcccg tacaggcgca ggttttcggc gtcataacca gctcagaacc
     5041 gcacgacgga catttaaccg cgaggcggtt aagcgccgtt ttaacgggat gtttttccgt
     5101 cgcgctgatg gcaatatcgg cgctctcaac caggcgggaa acttccgcgt aaagaccatc
     5161 aataaagcgc tcgatggtca tttcgccggt ttcaaccgcc gcctgttttt cagcccatac
     5221 ggcggtcata tccggctgcg tcaccgagtc gggcagggca tcaattaacg ccagcccggc
     5281 ggcagttggg ataaatttgc ccttttccac ggtgatgtaa tcgcgggttt tcagcgtctc
     5341 aataatagcc gcgcgggtcg ccggtgtgcc gatgccgccg tgttcatctt ttttgtcttt
     5401 atccttctcc ttgagcaatt ttttaatgcg cggatcggcg acaaaatcgg ccacgcgaac
     5461 gagggcagcg agcagggtcg cctcggtaaa cagcggcagc ggtttagttt ttttctccga
     5521 aatcaccacc tcgcggcagg ttaatgtcgc cccggtttgc aggcggctga tggcctcaaa
     5581 cgaggtgctg ttttcgtcct cctcgtcgtc ttcttccgcg tcgttcagga acgtcgtaaa
     5641 acccgcatcg gtgattttac gcgccgagac tttaaacatc tcgtcaccgc atttaatctc
     5701 cgcgatcgac tcgtcatagc gctttttcgc cacgaactgc gcgagataaa actgcgcgat
     5761 ggtgagataa accgcctttt ccttgtcggt aaggcggctt aaatccggca tgttcgtcgt
     5821 cgggataatg gcggtgtggg cggtgacttt tttactgtca aacgccgcac ttttttgcgc
     5881 cgtgtcggtg gtaaggccgt taaaaacgtc gagcgttttt aaggccgcca ccacctgtgg
     5941 cgcgtcgttg aattgttcat cggacagata agaacagtca gagcggttgt aggtaatgta
     6001 tttactgtcc ttgagcttct gcgtgatatc gagcgtctgc tgcgcggtca gtttgtgcct
     6061 gcggttcata tacacctgga ggcgcagcag gttaaacggc agcggtgcgg ccgtggtttt
     6121 tccccggtcg gtggcggccg cgagcacgct ggccggtttt ccggccagag ccctcgcgag
     6181 tccttccccc caggccttat ccgtcagccg ctttttatcg tccaccggcg cgtattcgga
     6241 cgtctgccag cgggcgcaga caacgtccgt accgctgata aactgccctg cgagctggta
     6301 gtaaaacgcc tcgctgtgcg cctgattgtc gcgccaccgg cgcacaatca ttcccagcac
     6361 cggcgtctgg acgcggccaa ccgaaatcgt gcccttatag cccttatcgc gggctttgag
     6421 ggtgtaacag cggctcatac tgaagccaaa aatcgcgtct cctgcgctgc gcatcagggc
     6481 tttcaggtac atcccacgaa aatcgctgtt atcgcgcagg gagttgatgg cttttttcac
     6541 cgctggcgcg gtgttgtcgt taataagcgc ccgtttcacc ggcgcggtgt ttccggcgaa
     6601 ctccagcacc tcgtcaacca ggagctgccc ctcgtcgtcc gggtcgccgc agtggacaac
     6661 cattttgata tccgggcgcc gaatcagctt caccagggta ttagcctgct ttgccacgct
     6721 cgcttttggc tgaagctgta ccgggtacag cttcagcggc agggtgtcga gcgaccaggt
     6781 ggcgtaggcc gggttgatcg tctccggggg caccatttcc agcacgtggc cgacgcagta
     6841 gctcacgata tcggtcgccg attcggcata gccgtcgtgc cgggtgaagt tgccgcccag
     6901 cgctttcgcg atatcgctcg cgactgcggg tttttctgca atccacagtc tcattcttga
     6961 tctctcctga tttcatccat cgtttcgaag tacatcattc gactttcctg aaagtcgtta
     7021 tcagacagac taaagccatg atccgccgct actgtcatga acgtctcagc atcacggacg
     7081 ctgagactgg tcagaacatc gtgcaattcg cacagggcgc gatattggta gatttcgtaa
     7141 tgcaggccgc agccgcgatg cgcttctttc tcgatgcgag aaatcaggct cgcggcacta
     7201 acggaatcac cacgcacatg cggccacggc ggggctataa atccggtttt tgttgccatt
     7261 ggagtgcatc cttatcgttg agtttttccc attccgccgc ctcgtcgtcg ctcagcggaa
     7321 cggtgtaaaa gaagaccggc atactgagca cggagcggaa gaacgactga cgttctgctg
     7381 gtaatgcctg gaaggtcggc gagtgctgcg cggcgagctg gacgagttcg gacgtgttgg
     7441 cctgaaaatg atcctgtttc tggctgattt ccgacaaaac gagcagcacc gtctgcaaat
     7501 cacctgcagg aagctcctca tctttcagca gcccggaaaa gttattaata gaaacggttt
     7561 gattaatcac gtggtgtctc ctttacggct gccgttttac caaccgttca tacggccaaa
     7621 tttcgagatg atcttgccga caatggcgct gtcagcggac gggcaggcgc tcagtttttt
     7681 ctgccgcgct gcggcggtgt gatcgggtaa aaacgacccc ttttttttct ttttgatgct
     7741 catgaaattt ttgtacatcg ggtcacactc ggcgggactg ctgccgtcga gctttccggc
     7801 caggcacagc accatcgcgc acgggtcatt cgggtcggca ttctggccat cggcggcgaa
     7861 cgccggagaa gtaagggcgc acagcagcgc cgccgtgatt acggtgtgtt tcatgatgat
     7921 ttcctctgaa gggaagcagg gcgctaacgc ccgttggttg ttcaacgtcg gtgacggtct
     7981 gaaggactca gaccgtcacc gacgttatcg gtagaagacg atttctgagg tgtcgcaggt
     8041 caggcagccg gagcgggggc gaaactccac cacacccttg tagccgccct cgcggagcca
     8101 ggttttggcc gcaaagaagc gctggccgtc cggggcattt actaccgcgc gcgaggcgtg
     8161 cgcaaccgcg taccactgtg cggccgggta aatcccgccg ggttcaaaac gcgtaagcac
     8221 ctgcgaccag tgcccttccg tcaccggcga ggccacgata agacggttgg gttcccatac
     8281 cggccgggtg gtcgttaccg gctgcgccgg ttgtgaccag tcaacggccg caggctccgg
     8341 tggcgaagaa cagcccgcca ggaggacgac gatcgccgtc aggccggtca gtttaggcag
     8401 catcattgaa actctccttc atagcctgca tgtgcagggg tttaaaatag acgtcgctca
     8461 tgcggcgcac gttgccgtga acgtccacgc tcacaatgac gtcgacgcag tgcagtacct
     8521 tgcgcagcag cacgtcaacc ggcatgcccc ggcacgccgg atgctcgtag cagcggtcaa
     8581 tcagcccgga gatacactcg cgcgggctgc ccgcgtgcag ggaggacata aacccctcgt
     8641 gcccggactc aatcagcttg agtgcgtccc acgcctcgcg gccacgcacc tcggcgagca
     8701 gggggcggtc ggggttcata cggtaaatcg cgcgcaccag gcgatcagag gtgactattg
     8761 cgccctctcc ggcgtccgcc gggtagaaca gatgaacgta gtttttctgg ctgtaaaact
     8821 tcagctccgg gttgtcctcg atggtgataa ggcgcagcgt ctcgggaatg tagtgcagca
     8881 gcatcttcat gtaggtggtt ttcccagagc ctgtttcccc caccacaaag agcgttttgc
     8941 cgtactccac gcacttttcc ataaaaagcg ggatattccc ggacaggtat atgcggctca
     9001 gctccccgtc ttttgattcc accttttctg taccctgcac ccggtcataa aacccggcat
     9061 cgatatacga ctgatgggtg cgctggaagt agtccggctt acgcagggtg attgagatgg
     9121 tgttacgctc acaggccggg ggcaccacta tctggcagcg ttctcctgta gggagcgtgg
     9181 ccgagaggat aggcgacgtt tcatcaatgg tgtcgttgtt ccacacggcc agcgccctgg
     9241 caaaggacga gcactggcgc agcgtgaccg gcgaggcgtg catttcccac gccccgttga
     9301 tttttgtgtg cagctctccg gggcggttga tggcaatttc cgtcagcccc tcccggctca
     9361 ggtagtcccc gaacaacaga tcgcgcaggt gtgacagcgc gacgttgccc tctgacgggg
     9421 tatcagtcag tttatcgtcc atcgcttacc tcatgcgcag tctgtagacg tctgaaaaat
     9481 caatgtccgc ccccgtgacc aggccaatca cgtcaccctg gttgaggtac atcgtcggcg
     9541 ggatgttgat gctgttttcc aggagcgttt ttgccatttc cgccgtggcc gcgcgggtgt
     9601 tctccgtgta gtccgtgttg cgatccttgc ccggcgacga gccggaggcc gcagcggcaa
     9661 agtcctgtac cgtgccgagc aggagggtat tacctatccg ctccagccag tgattgtcta
     9721 tccagcccgc gacgccgttc tcgccaagcg cccccacggc ctggctgtca accatcggaa
     9781 taaccaggcg gccgggttcc ggcgtgcgca gctcggtgat ggcgaggaac agacgcccct
     9841 gcccgttttt cagcgtgccg gtgcggtaca ggccgcgcgc ctcagtgcct gccgggataa
     9901 ggcgcacggc gttgctggcg ctgtaaatgt cctcgctgat aaggcagtta aagcgcccgc
     9961 ccacgtccga tacaaagcgc tgcatcatcg cgcaggggat atgccggtcg gccggaatgt
    10021 acaaatccgg atcgaggccg agccgcttca cgccggtaat gcgcgccagc ccgttatcct
    10081 gcgactgccc ggcgggtgtt gcagagcctg gcgcggacgc gctgcccgca ggtgatacgt
    10141 tactgctgga cgtgcttttc ggggcgctgc ttgcagtggt tggggcgctg tctgccaggg
    10201 cgctgacctt gtcaaacgtc agggggggcg gtgatgcctg cggcggcgcg gcggtatcag
    10261 tcggagtagt cttctcctgg ccggttgtgt ctgccagctg tcccagcggg ttcagatccc
    10321 gtccgaggtt attgcgctcg cgggcggggg aggtggcgtg cgattccggt tcatggctcg
    10381 cgctttttcc gctgccgtca cccttcagtt tcgccatcag gtaatccccg ccggtggcaa
    10441 taatgaccag taacaccagg ctgatggcgg ccagcacgag cgagcggcgg ctgcggcgct
    10501 tcgcgtgctg caccacctgt ggctgtccgg gtggcaccgc gcctgcggcg ggtttatcgc
    10561 cgtcaatctc tgcccgcgcc cgctcgcggg cttccgcctc cagttcggcg gcggttttaa
    10621 tgtcttcctg ttcgttcatc atttgctctc cagtttcaca tccggtgaga cggtgctgcc
    10681 gttcgccacg gtgactttcc cgtaactgcc gttttcaatc cccacgacct ggctgccgta
    10741 gcgcagcaca aagcgtggag aaagagagcg cagtaccatc acccggtagt taccctcggt
    10801 gctgaaggtc ggggtgatca cctgctcgct gccgccgacg atgacggtcg gcgacgggat
    10861 cagcttctgc ggtgaaaagc cgagataggt aaaccggccg tcgtcatacg caaaatccgg
    10921 ggtgatcgac tccgaacctg ccgccaccct gcgggtgtag ttccagttgc gcggcgcagt
    10981 ggatttcttc agggcaaact gaatgcgttc tttctcctgc gcggcctgaa gctcctgctg
    11041 acgggcgagg cgggctgcgt cgttctgcct gcgggtatcg tcggggtagc tgaagcgcac
    11101 cacaaaggcc agatttcccg cctcgcgatc gttatcgatc acgttcagca tcaggctgta
    11161 gtcgcgcttt gtggtggtca caaacaggtt ggtctgccag tcctgctgcg tgggggtgaa
    11221 aatcttctgg acggttttgc cgtccgcatc cgttaccggc tgcttcaccg gcgcggggct
    11281 aatccccacg cggttacggt cgggtgtgat cgtccagccc tgcggaaaac cagcggtggc
    11341 ggtgatcacc tcctcgtcgg cgtcaaaaac cagcgtcgtg atgtaacccg cccgcgtgtt
    11401 aatcactgtc gtgttctggc tgttgtaggg gatgttctgc atgcggctgt cataggcgct
    11461 gccgcgcggt gtcgccgccc cccatgctga cgctgcggtc agcaggaggg cacacatcag
    11521 taccttattc atcgcttttc tccttaaacc gctggtaact ggtgacgatg aagccgaacg
    11581 ggttcacctc gcgctcggag gccgtcattt tcttctgcgg gaaatagcgg taggtcatgc
    11641 gcaccgtcca gtaatcatac gtttcggtgt tgtccttgac ctttcgaatg gtgcgcttga
    11701 tgcgcagcat ctccaccatg ctggagccgg tgccctctga cggtacgttg gagaggactt
    11761 ccaccgtgac tacataggcc gcctgctgaa acacagcgtc cggcgcgtcc gggctgttaa
    11821 accagtcgag gtattccttg ttgacctcgt cgctgttgaa catctgcgtc tctctgtagt
    11881 cctgctgaag ggcgaaatag ttgtacccct cgcggcgctt cacgtaggac gcagtctgcg
    11941 agagattgag cacctcggag gtgtccagct tgtcctcgcc gacggtggtg acgcgctcga
    12001 tgcgcccggt ctgacggtcg agcgtgtaca gctccacggt ggtggttttg agcggtagca
    12061 gcaggataag ggcggcaagg gcgaagacga gcagcagacc ggcgagcgcc gccacgatcc
    12121 agcccgcctt tttcatgcgc atatcccgct caagaatggc gttctcaaac gagcgcgagt
    12181 cgctcagggc tttggcggta agttcagaca tggggggtta actcctgaat aatggccggg
    12241 gaattgaccg gctccgggtt gcccgacacg ggcggaagtt gggtgtttcg ctgtgcgcag
    12301 cctgcaagca ggcacagcat cagcagcgtg atgccgtatt tcatggtgtt tttcctgtgg
    12361 taaagacgtg acgaagccgc aggacgccgt tgcggcgtcc cgcagttcag tcagactggg
    12421 ttatctctgg tagcgttcct gcatccgctg aacggcggcg cggctgcggc tgcgcgcatc
    12481 gccggtggcg cgggaggccg tggaggcaga cgaggccgtt gcgctgccgg tgctgttaag
    12541 gttctgtgag gctttatccc ccaccgcacc ggctgcggag gaggcggatt gacgggctga
    12601 acctactccc gacgcggcaa gtgcctgagc ggcaccctgt gcggatgcac cggcaagcgc
    12661 ctcggccagc ttataggtca ggaccatcac ggcggcggca cccgccgtgc cgaggaagac
    12721 ctgaacggcc agagtcaggt agttggcatc ggatgctttt gtggcgcccg ccaggatgta
    12781 gtccaggtaa tccattacca ccgtcagggc gatgccgctg aacagggatg taaggatgca
    12841 gcccagaata attctgagcc agttgctgaa catatcccgg aaccacgacc acatcaggca
    12901 gtagataaag atcggggcgg tcgccagcat cagcagcatc accagttcgg ctatcaggtt
    12961 aatgatggcc gtgatgccta ccagtaacat gacgcctgcc cagaccagaa actgcgccag
    13021 agtgcctttt agagcgacat aggttgaatc atcataagag taaagcttct ccccaagtgc
    13081 ttgagccttt tcccagacgg tatccagccg cgcccagatc gacgcgtcgc cgctgaatcc
    13141 gtcccgcagg ccggtgatgg catccgaaac cagatcgaga tagcctccgg cgttggtgac
    13201 gaaaatcatg atgatgagca tccggctcac gtcccacacg atctcctcga aggggcggac
    13261 tagcttgcct gccatcgtct ggtaggcgcg ccacgtgatg tacagcgaga gcaccgcgat
    13321 ggagaacagg tgtgccatcc acccccccgt atcggcggcc acgctggtga gcacgctgtc
    13381 aaacccctcc atgatgtggc tgtttaatcc gacgaatatt ccactcatgg tgcgttctcc
    13441 tgtcgctaat tcaggtcagc aataggctct tgcacgcgag ctttatcaag gtctttcagg
    13501 atttgcttat atccttcggc aacatcaggt ttagcttttt cacggtgaag ggcggagcgt
    13561 gcattctggc aatcggtggg cacaaaatta tgattaaaaa tgcactccct gtatttcgcc
    13621 agcatgtcgt catggtgtgc catataccag tctacggagg ttttatcctc gcagccagta
    13681 agcgcggcca ctgaggccag aacaataaag gtcagtgtct tcagtttcat ggggtcacct
    13741 gttagttaag gtctgcgatt ggagctgtgc gcatttgctc ggcctgcgcc tttcggcgtt
    13801 gttcggcaag cagctggttg cgcatctcac tttgtttgac cgacatttcc cattgagtgg
    13861 tcagggcgtt cagctggata ctccgcgcgg acactacgtt cgccagatcc tgcgattctt
    13921 tactgtcctt cgcattctcg atgcgactgg cgagattact aatatcgctc agcgtgtcgg
    13981 aaattttttc ctggatgtca gaagtgtcct cgacggacac cgcctgattg aggagcatct
    14041 gtttgcagct atcccggtac gcctcgctgg cgttctccgg gcagttgtcg aacagtttgt
    14101 atttgtcata cagcctgttt agttccccag cataagaccc gcctgagccg gttaacagat
    14161 cgtttaagga aatccccctg tttttcagat ttttaatgtc agccgtcagg ttttttgcct
    14221 gattcaggaa tgcctggacg tcccgaatac cggtggccgt tgccagctgt tgtttataag
    14281 cgttcatctg cgactgataa tgttgaaccg tctgctgcca ctgctggagc ttctccgccc
    14341 actgctggat gttgctggcg ttggctactt catcaaaaac gggaataccg gcctgagccg
    14401 ggacgtgaaa gagacacaag gcgacggtca gcgccgtcag ggtggttttc agtttcatgg
    14461 tgttatcctt ttgtgattaa acggcacgtc tcagcatttc gtctttccag tcttccggct
    14521 tcataccctc ctgccagatc tcgtcaaaaa ttttcaggtt gtccgcactg gcgctgagca
    14581 gcttcgtgta gcgacctagc ccggagaggt cgagggtgat ttgtgcgata tacgggcgca
    14641 cgtcaccacg ccgcagcgga gatttcatga tcaccatctg gcgggcgtag gggtcgaggg
    14701 tggtcacgat gtcgtaaacc gctttcggca cccgcagcat gtccacgtag tcgtactcct
    14761 tcgcctgctg gttcgccatg aagatgcggg tactacactg ctcgataatg gccgccgaga
    14821 tctcgtgctt gcacatctcc tccggcgact gcgtggccgg gaagaaaatg ccgttgagct
    14881 ttcgaatgac cttcagcatg tcgagggcga attttgaaaa ctccgggtcc tgaagccatt
    14941 tccagaattc atccatgaaa atgaccaggc ggcggccatc gaggaggctg gtcacgcggt
    15001 agagcaggta gaaggtgagc gggctgcgca cgtctttgtc gttcaggaac tccgtgccgt
    15061 cgatgccgaa attatcaata ttgtcgatat caaaggtgtc cacgtcatta tcaaacaccc
    15121 agccaaactc cccgccctgc gcccactgct ggagacggat gcgcagcccg ttcatccgtg
    15181 cgtccttcgt cggggcttca tgcagcactt ccagcatgcg ggtgatgccg ttgcgacgaa
    15241 gctcaggcgg gtagtccagc atgatggtgt ccactgcctc gctgaggcgt tcttcatcgc
    15301 gcgggtcgag cggtttgccg tcccttgtgc acatcattcg catcagcttc ttgaggaagt
    15361 tgcggttacg tttcgttgga gcgagcgcaa acgggttaag gccggtcttc tcgcctgaac
    15421 ggaaacggaa gtacgagccg ccctggaggc gtatcgacat ttccgccgaa cggtctttat
    15481 caaagaccac cgaggtgaag cgctttttcg tcgcccccgg cgcaaacgac tcaggacgcc
    15541 ggtatttctg catcagatgc tggaacatca tcagcagggt cgatttcccc gtcccggtac
    15601 tgccgagcag catggtgtta cccggcggct tctcgctgaa ctcgtcaaca tcggcctggc
    15661 tgttgtgcag attcacgtac tgacatcccc cggacggggt cggaacaacg gcaatcgcct
    15721 ccccccaggc attcccgtcc cgcttgtgcg ggtgaaagtt gtgaaacgac accatttcgg
    15781 cgtagttgag gctgctcacc ggcaccagac gcgggcgcag gtgatacaca cccggcaact
    15841 gcgcgagata cgccgccgac agcgactcgc gggacagggt catgatgaaa ccgagatcct
    15901 tcagggtatc cgccagggtg ttggtgtccc ggataacctg ctcgctggtt ggggcgctga
    15961 caataagcgt ctggtgatat ttcccgaatg aaataatgcc ggactgaagc atgtcgcggg
    16021 cgaccttcag gtcttcctgc tgggagatcg catcatcctc ggcagacttc aggcgtttct
    16081 cgatggtgcg gatgcagccc cgcgcttcat ccttacccat gcaggtatag gactgcgtga
    16141 acacgtaccg gcagcgggca taaagaagcg agtcatacag cccggtgatg gtttcagtgc
    16201 tgtaatcctt gatttccagc ccgcgaaagt agctctggcc gtcggtgtgg ctgacctggc
    16261 caatgtcggt ggaagggaaa atatccgtgc cgcccagcac gtcataaaac ggcgtgcggg
    16321 tgacgcggac tttctgccac ctgccggtga tcagaaagtt gtaaaacgcc agctgggagg
    16381 agaacacgtg cccgttctcc tcataagtgc caagcggccg cgccgcgtag cgtgacagcg
    16441 ccgtgccaat cgcttgccgg tgctcctgca tcacctgcag ggcattgtcg agcagggttt
    16501 tacgttcgcc cagggacttc tgtttcatgg tcgcccgctc aatgccggtg tgcggattga
    16561 agcagacggt gaagaagagg cgacgctggt agaaaggttt gccctcgcgg gaggcgtaaa
    16621 acagacgcgc gatttcatct gaaaacggaa tcccggattc acattcaagc gtgtcggtaa
    16681 attcgtcgct caccagatgg gtatagaagg taacgggtag cccctcaaag gagcggataa
    16741 cgttgttgag ctgcatgtcc agggtggcga ggtaatgttc atcctcgcat tcaaaaatga
    16801 taccgccgat ctcccaggtg ctgacaaagt cacctttttt gttcttcacc acctgctcgt
    16861 gcaggtggga agaccagggg agatagcggg acagcgggat actctcgttg agccgcatat
    16921 gttttataaa ctccgtaacg tctatggcgt cgtactggtt tgcgacaagc gcctttgtcc
    16981 cgaaatgccg ggtcgccgcg cggttgccac gcgttttaaa cgccagcaac ttcaggtcaa
    17041 agaaatgaat gtcctctttt gccagccgtc tcagctcgat aaaggcaggt atgagaagca
    17101 ggagaagcca gtaaaaacgt gaccagacgg ccgccagggt aaggatgcac agggtgaaca
    17161 gcagggggac aagcgggacc ccccacagcg ccgccggtcg ggtcagcgcc ttgttgagga
    17221 tggtcatgct gcctccttag gcggcgaagt aggcaccgaa cccggacgcc ccggcgagca
    17281 ggacacccgc ccagaacacg cgctggagat cgtgccaggc cttgccgtca acaagcatct
    17341 tgtaggcgat aaaggccacc gcacagctga tagtgacgac tgacatacca gttaggccga
    17401 ggaagaccca gttaatggcg tcactgcctt tctgaaatgc ctggtcagcg ctggccgcca
    17461 ttgctggaac agcagacagg gcggaaaatg cggcaatcag gcgggttgca gcggttttga
    17521 tagtacgtaa agtcatgatc tcttccttaa tcagaagaca cagcgaggcc gccgcgcacg
    17581 acatgtggcg gataagcagc gatgctggtc ggggtggtgt cgggtgccgg aattacgccg
    17641 cgtatgacgc tatccgggta aacagtgttg tcggacggga cggcaggcgc ttccccggat
    17701 gagggagatg ctgtctgctg ttctgcccgc gttgagggca caacgtagcc aatacgctgt
    17761 acgtagcttg tgttgccgaa cgcgctttcc gggcgctggc cggtttcaaa gttgcctgag
    17821 taatagcagc tcagggcgcg ctgtaatgtt cctcctcgtt gatagcagtc ggtgatgatt
    17881 ttcgcggcaa cagtcatgtt gtcacagggg ttaaacatgg attcggcgct tacgccgaac
    17941 tgcgggaagt tggtgctggt tatctgcatc agccctactg aataacggtg ctttttctgc
    18001 tttatggcct ccacaatttt tagcgcctcg tctttcgacg aaggcagatg agaaatcacg
    18061 cggctcctgc cgccctttac cgggacaatc tcagcgatgg catatggatt taagccggat
    18121 tcggtgcggg tgatgtcgtg gatggtatcg gggtgaacgg cgggagcaca ctgcattgcg
    18181 agctgaaaca acgcggcagt ggttaacata gtcagtcctt tctgtagagc agtaccttac
    18241 cggtggcaca gtccgggttg ataaataact gaatgtcgcc ctggctgtta gcttgggcaa
    18301 caccgatttt tgtaagcgtc attgccagcc gatcaccctt caccgaatac acgttgtgcg
    18361 tgtactcggt catgggggtg aatacggctt caagcagtga ggccggagca ggcgtgatgt
    18421 caggcattac atttcctatt ttccagcagt gaggtgattg catcgatacg tcgcagcctg
    18481 tcggcaataa gtacggatac atcggatttt ttgagtccct gcgctttcac agtcagggta
    18541 gtgatttctg cccgcagggc tgcccgttca attagcaatt ctcggacgtt atccggcagc
    18601 tccctgagcg accaggtgcc attaatggca cgcgtgatac ggtcacggga ggagcgtagc
    18661 ggcggcttgc cgagagttga ataaggattc tgacgcagcg ccttacggcg gacggtttgc
    18721 atgctcatgg ctgtttctcc tgggtatgag taagccaccc gcgtgcggtg cacagtggga
    18781 gacagggaag gattaaacgg gaggcttaac gatacagagg agtgagagtg ttacccatta
    18841 caggcgcggc acgtcatctc tttacgcagt cacagaaaac acctccttat cctgaccggg
    18901 gaacgccgct gctaggttat taaagagcta atgatttgat taatacaata gtgcttataa
    18961 gttgggtatt caataaaatt ataacttata gtatcgattt aagaatgatt ccaattttta
    19021 ggactttttc agctgtgtaa aatgttggag atgtttgaaa aaattgaaaa aaaatactgg
    19081 caggataaaa tcaagaaaat ctccaaattc agagtaataa aaatgcaaga tctcgatgat
    19141 gcaaaagtga tagaggtact ggcgaaggta ttgaccaaaa aaggtatttc caaggtaaag
    19201 cacaatagtt acataagtaa ggtgctacag atcactacat cagcgggcta taagaagttg
    19261 aatggtgcga ccaagtggga ggttcagcaa ctcataaaag tagtccaatc cgttggcatg
    19321 gatatgattg agtttttccg tatttattat gaggataata aagaaattca agatgcgatc
    19381 tggaacgatg gccgcagtga acactcttgt aaggtatgcc tctatcctga aggttcggaa
    19441 gtaaacacag aatactcagc actgaaagta gctgaccaat ggaacatttt tccgacaaat
    19501 gatttaaaag atgaactgct ttatgaatca aaacgaagca tagaaagtat tgtcataaat
    19561 ccaaaggtaa ttagcagcac taagtatcga attgcactac ttgatgacga tgctaatatc
    19621 accgaaagct taaaagaaat cctttcgaac gattattatc aagtagatac ttatgataac
    19681 ttgaaaaaac ttactcaagc tgtcgcaaca aatccgtatg acgcatatgt tttggactgg
    19741 atcatcggtg atgaaacaag ctttaagttg gttaaagcta taaggtcgtc aaaaaataaa
    19801 aatgcaatga taatcgttct tacaggtcaa ctatctggta taaaagatga tgaaattgta
    19861 aagtcaattc atgattatga cattgtggga ccatacgaaa agccgattaa atcaggcatc
    19921 atcaaatcta acattgaaaa atatttcgcc agatagatta tgagaaattt acttgaatat
    19981 tccggtagct tgataagtaa cgatagtttg atcgtagcac cttacgattg tcagaagcta
    20041 agctatgaaa atattttacc attaaacaat agtcttataa aaaactggaa tatacaaaaa
    20101 ttctcaagtg attactctga aatagaacac ctaaatgtga tcaatggcat gggagtgaca
    20161 ttaggtgatt ctatcgtcgg gatttctgtg ctgtcagcaa tcaaaaaaaa gaatcccaag
    20221 attaaaatta agcttattcg accggagact gcaccgtcat atgttgagga actgtatgaa
    20281 ttagcatcct cggttataga tgagcttcat tacatgcctt ttcatattca gaaattgcct
    20341 tgtactgcat tgaatattga tgtgggaaat cagctatatt ctccagattt ccatattatg
    20401 gaaatgcatg attattttat ccaaggtctt ggcgtgaaac ttgatgatgt taaccataat
    20461 gagctatcta ataaatggtt aggcaatatt gatctcggag cgccagtttt tgaaaactac
    20521 acactttttg cacctattgc tagcacaaaa ataagaagta taccgtcgaa gttctattat
    20581 gacatagttg atatgctttc taggcgcgaa ggaaaaacgg tactaggttt cgtggatgtg
    20641 aatcataaaa attatattaa catatcaaag tattcacccc atacgaaaga tttcatagcg
    20701 ctaattaagt atgctagcaa cgtttatact tgtgactcct ctgcattgca tatagccgct
    20761 ggatttggtg tacctactga atgcgtgttt aatacaatac cgccagaatt aagaacaaag
    20821 tattacagta agtgtaagtc gatttatgtt gggaataaaa gattagaaaa aattcagagt
    20881 agtgaagatt tccaactggt taaaatggtg gaaaataatt acagggagta tctttatggt
    20941 taaaataata tcattcttat ccctaatgct tttgtcaatt agtgcatata gcaatattgg
    21001 ggatatagtt atagatggtt caatcgctaa tgctaacagt gataaaggtt atgtgattac
    21061 tgaaaagcag tttgattcgt tcccacggga taccatcgta acgacaacac cttggacgcc
    21121 aaccggtaaa aaagtaaaat tcaagggcgt cgacctaagt tatgttttaa aactcgctgg
    21181 cgctaatgga gcaaagctaa aattccatgc tctgaatgat tatgaaatca ttgtagacat
    21241 gaatgacgtt gaaaaatata acattttatt ggctacagaa atggatggaa aaaggcttca
    21301 aataagggat tttggacctt attttttggt atatccttta gatgaacatt atattgagct
    21361 taacacgcca cactatcttg cacggttcat ttggcagata gacaaaatta cggtgctcaa
    21421 atgaaaaaaa atttctttat cattttggtt gctctgcttt tgttgatagc attcactgtg
    21481 tctagtgttg ttaagtacac cagtctttta tcggagaaaa atttatacac cgtcgctggc
    21541 acccaagaaa actacggttt ctcagtggca aaattcatta tacagttgaa tgagctttac
    21601 acgctaatca atagcgataa tactattgac gatgttaggc ttaaattcga tatcctttat
    21661 tctcgtttga atgttattta tgtaaagagt gaggcgactg cacctctata taaacagcaa
    21721 ggctatgaag aaacaattga ttcgataaac aaaaagcttg aagacataga cgggctgctt
    21781 tcgcataatc accctgatta taaaaaaata agtacaatca tagctgatat aaaaccgcta
    21841 actaaaaccg ttacaaatct tgctgatatg gctgaaatag cacaaaggaa tgacgctctt
    21901 aaagatttca ggagcaaacg tcagcagtta tggactctgc tttttattac aggtgggttg
    21961 atttccttac ttctttttgt cctatttatt tacataagta aaattaaccg attgttacta
    22021 tcagaacggg ctgcttttgc cagtaaaaat gcatttttag gtatggtagg ccatgaactc
    22081 agaacatctt tacaggcaat agtgtctatc attgatgtcg taaccaataa tctgagtgga
    22141 gggattaaat ctggtcagat agaacgactt gaaactgctg tttcgaaaat ggagcgccag
    22201 ttaaatgatt tggctgaatt tgcaaaaatt gacaacggat ctgtagagat aaaaaacacc
    22261 tataatagct tgcaagcaat tgttactaac gctgtgcagg attgcattgc tatttatgaa
    22321 aaaaaggatg tcacagttaa aataaaaaac aataatgatg cagtgatttt tacagatgct
    22381 ctacgcctta atcaagtaat tgaaaactta accagtaacg ctattaagta cactgagcgc
    22441 ggggaagtta atgtagatta ctttatagaa aaaggtaagg tattaaatat tgtcatttct
    22501 gataccggaa agggaatccc taaagacaaa ctaaagttca tatttaaacc atttacacga
    22561 gttgtagatt cgaaatccac tgtacctgga tttgggatgg gacttgctat tgttgcaggg
    22621 ataatcagac tattaaaagg tactattcat atatctagtg aagtaaatgt aggtacaact
    22681 gttacagtga gaatacctat caagttggga gatagcagcc ttgcaacagc tgaggtatct
    22741 gcttcagctc ccggagatgt cttcggcgtt cttagcttgc ttgttattga tgataatgaa
    22801 atggcctgtt cgtctctttc cagtctgctt actaatgctg gatacattgt cgaggctaca
    22861 acctcgcctg aacgagccct ggaaaagctt ctgcgtaaac cttatgacgt tgtcctgagt
    22921 gatttacaaa tgccaggcat gacaggtgat gagctgtatg caactgttag tagcagtcag
    22981 aatcctaatc gatccacgcc tttcatattc atcagcgcat acagtgatgc acactctatc
    23041 ggacaggctc ctttgttaac taaacctgtc aggttaaaag atataaacct taaaatacat
    23101 gaggttatgt caaatcaagg acgagtcaaa agtgagtagg cattgtcgta atatttgcga
    23161 ttatagcttt ggtgttctcg atcgttgcga attttgaaaa tttgtggagt caaatggcgc
    23221 cgaaagcccg gcgtagccgg ttacctggct ataaactctg ccaccctacc ccctgccctg
    23281 attagcctta acccgcttac agcaatgaag aagtaaaagt aatccctttt aaccccggtg
    23341 agcgggcttt acggcgttta cgacgtaaag ggcgtgattt ccggggcctt agcggcggca
    23401 gcttgctgct gacgcttagg gggatgttct tcagttattt cagcgacacc agggaactta
    23461 acacggtagt tgcaaagcta tacccgctaa aaatgtctca gatgcctctg tacgcggtcg
    23521 gagtggtccc ggcaaggcgt cagccgcagc cggggcgtat ctccgcgtta gcgggccgaa
    23581 gggccgctta cgagcgtgta cccgacaact gaccgcagct ccacccacag cgatgaagaa
    23641 gagtagttac aacacccatc attaaaagcg acactactcc cggccttcgg ccgggggcgg
    23701 cggcgctttt cagtggtggg gaggggcacc cggccggcaa accggcgccg gttttatgat
    23761 gagctttctt ttgaatgctg taactaattt ggttctccgg tcggggccct tcgcgaagcg
    23821 atgggagctc tttctgatgt tgccgaaccg gcgcgaccgt caggtcgctg caagagcggg
    23881 cattctccgg agcctgtcca cagggtaggc gatgaagagg ttatgtgttt acaggattta
    23941 ttaaaggatc tttaaaagag atacagaact ggtgtttaaa aggaactacg cgccctgaaa
    24001 gaccgacggc aggctcagaa gatgctccag cgtggccata gtacgttcac cgaagacgtg
    24061 tgcaacaacc gtcctccgta tcctgtcata cgcgtaaaac aaccagcgct ggcgtgattt
    24121 agcgccgacg taaccccact gttcgtccat ttccgcgcaa acaatgacgt cactgcccgg
    24181 ttgtatgcgt gagtttaccg actgcggcct gagaggcggt gtaagtgaac tgtagctgcc
    24241 atgttttacg gcagtgagag cagagatagc gctgatgtcc ggcagtactt ttaccgttac
    24301 gcaccacgcc ttcagtagct gagcaggagg gacaactgat ggagatggaa gccacgggag
    24361 cacctcaaaa ccaccatcat acactaaatc agtaagttgg cagcatcacc gtaatcgtac
    24421 agctaagaac aagtgcttca agtctactta ttaaaatgta cctttgaaaa agtagacttt
    24481 ctgcggtacg ctctgacagt aagtttgccc ccgatttttt acgcagcgcg ccggacggag
    24541 cccgacatga tcctgattcc cgatgacgaa ccggagctga gtctgcccgc agccagtgag
    24601 gaattcctgc cggcgctgtc aggtgagaat gccccggtca gcccggcccg ggcctacctg
    24661 ctttcactca attcccaccg cagccggcag accatggcct cgttcctgaa catcgtcgcc
    24721 gttatgctcg gagctgcctc cctggagtcc tgcagctggg gcagcctgcg gcgccatcac
    24781 gtgatggccg tgaccgaact gctgcgcgac accggccggg ccaccgccac cgtcaacacc
    24841 tatctttcgg cactcaaggg cgtggcgaag gaagcctgga tgctccggct catggatgtg
    24901 gagagcttcc agcatatccg ggcggtccgt aacctgcgcg gcagtcggct gcccagcggt
    24961 cgggcgctgc cccaggggga gatccgcgcc ctgtttgccg tctgtgaagc cgatcgcagc
    25021 tgcctcgggg cgcgggatgc agcgatgctg gcggtcattc tcggctgcgg cctgcgacga
    25081 tccgaagtag tgagcctgga tttgcgtgac gttgtcactc aggaccgtgc gcttagagtg
    25141 ctgggtaagg gaaacaagga gcgactggca tatgtcccgg ccggtgcctg gcagcggctg
    25201 cagatctgga tcgatgagat ccggggcgag accccgggcc cgctgttcac acgcatccgt
    25261 cgtttcgggg atgtgactct aaaccggcta accgaccagg cggtgtacca tatcctgcag
    25321 gtgcgccagg gtcaggccgg catcacgaaa tgttctccac acgatctgag gcgaaccttc
    25381 gccaccgcga tgctggataa cggggaggat ttaattaccg tgaaggatgc gatgggccac
    25441 gcgagcgtca ccaccaccca gcagtatgac cgtcgcgggg agcaacgcct gcaggacgcg
    25501 cgggatagac tcaaccttat ttagggctaa gtaaacacaa acaagggggc tgtaccccct
    25561 ctaattttac attaacacga tactcgacag actttcccag tcgtagtcag caaccatcgc
    25621 ccgatggagg ctgggataaa tgctgacagc ccgacgtgaa gcaaaaggct ctcgccgctg
    25681 gcatggctta atgtcgcggt cccctcaatc actaacacaa tttcagcgct ggatgtcatt
    25741 accgtttgat tgttcaccgc agtgaaaata ctgaaatgga aatcctcaac aggaatagga
    25801 tagcgcgctt ctgcggcgtg ctgttccggt aacatagggg agcccgcaga attcggaaaa
    25861 aatcgtacgc taaggttttc cgggcatccg taagggccga aacttcccgt cttccagtct
    25921 gcggctctgc cgccagacgt aatcgccggt taggttgatg tgctcccagc ccagcggcga
    25981 caggaattgc agcagctcgc cgtccaccgg cttgccggcc tcgaccaacc cctgggtggc
    26041 gcgttccagg tacaccgtgt tccacagcac gatagccgcc gtcaccaggt tgaggccgct
    26101 ggcccggtag cgctgctgct cgaagctccg atccctgatt tccccaaggc ggttgaagaa
    26161 caccgccctg gccagcgagt tgcgcgcctc acctttgttc aggccggcat gcacgcggcg
    26221 gcgcagttca acactttgca gccagtccag gatgaacagc gtgcgctcga tccggcccag
    26281 ctcgcgcagg gccacggcca gtccgttctg gcgcgggtag ctgccgagct tgcgcagcat
    26341 cagcgaggcg gtgacggtgc cctgcttgat cgagctggcc aggcgcagga tgtcgtccca
    26401 gtgggcacgc acgtgcttga tgttcagggt gccgccgatc agcgggcgca acgtcgggta
    26461 ggcttgcacg ccctgcggca cgtacagctt ggtttcgccg aggtcgcgga tgcgcggcgc
    26521 gaagcggaag cctagcaggt gcatcagggc aaagacgtga tcggtgaagc cggccgtgtc
    26581 ggtgtagtgc tcctcgatcc gcaggtcgga ctcgtggtac agcaggccgt cgagcacata
    26641 ggtggaatcg cggacgccga cattcaccac gcgggtgctg aacggcgcgt actggtcgga
    26701 gatatgggta tagaacagcc gtcccggctc gctaccgtac ttcgggttga cgtgcccggt
    26761 gctctcgccc cggccacccg cgcggaagcg ctggccatcg gaggatgagg tcgtgccgtc
    26821 gccccagtgg gcggcaaagg cgtggcgata ctggtggttg accagctcgg ccaaggccgc
    26881 cgaataggtt tcgtcgcgga tgtgccaggc ttgcagccag gacagcttgg cgtaggtcag
    26941 gccggggctc gactcggcca tcttggtcag cccgaggttg atcgcatcac cgaggattgc
    27001 ggacagcagc aacgtcctgt ctttggcctc ggccccgtcc ttcaagtggg tgaagtggcg
    27061 gctgaagccc gtccagtcgt ccacgtccat cagcagttcg gtgatcttga tgcgcggcag
    27121 taactggctg gtttggtcga tcagcgcctg cgcccgatcc ggcaccgccg catccagcgg
    27181 ggtgattttc agccctgact cggtgaggat ggcatcgggc agctcgttgt ccttggccag
    27241 gcgggtgacg gtggccaact gctcgtccag cagctgcaaa cgctcttcca ggtactggtc
    27301 gctgttcggg ttgatcgcca ggggcagggc ctgctcgcgc ttgagtgcgg cgaacttctc
    27361 ggccggcagc aggtagtcgt cgaagtcgcg gaactgccgc g
//
LOCUS       DAJVUY010000041        27206 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.041, whole genome shotgun sequence.
ACCESSION   DAJVUY010000041 DAJVUY010000000
VERSION     DAJVUY010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27206
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.041"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(40..1338)
                     /gene="eno"
                     /locus_tag="OQQ72_001565"
     CDS             complement(40..1338)
                     /gene="eno"
                     /locus_tag="OQQ72_001565"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCS2011339.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(1426..3063)
                     /gene="pyrG"
                     /locus_tag="OQQ72_001566"
     CDS             complement(1426..3063)
                     /gene="pyrG"
                     /locus_tag="OQQ72_001566"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HCS2011340.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(3291..4082)
                     /gene="mazG"
                     /locus_tag="OQQ72_001567"
     CDS             complement(3291..4082)
                     /gene="mazG"
                     /locus_tag="OQQ72_001567"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCS2011341.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(4153..4488)
                     /gene="mazF"
                     /locus_tag="OQQ72_001568"
     CDS             complement(4153..4488)
                     /gene="mazF"
                     /locus_tag="OQQ72_001568"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HCS2011342.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(4488..4736)
                     /gene="mazE"
                     /locus_tag="OQQ72_001569"
     CDS             complement(4488..4736)
                     /gene="mazE"
                     /locus_tag="OQQ72_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HCS2011343.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(4814..7048)
                     /locus_tag="OQQ72_001570"
     CDS             complement(4814..7048)
                     /locus_tag="OQQ72_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HCS2011344.1"
                     /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(7096..8397)
                     /gene="rlmD"
                     /locus_tag="OQQ72_001571"
     CDS             complement(7096..8397)
                     /gene="rlmD"
                     /locus_tag="OQQ72_001571"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HCS2011345.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            8454..11210
                     /gene="barA"
                     /locus_tag="OQQ72_001572"
     CDS             8454..11210
                     /gene="barA"
                     /locus_tag="OQQ72_001572"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HCS2011346.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(11442..12782)
                     /gene="gudD"
                     /locus_tag="OQQ72_001573"
     CDS             complement(11442..12782)
                     /gene="gudD"
                     /locus_tag="OQQ72_001573"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS2011347.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDNAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(12803..14143)
                     /locus_tag="OQQ72_001574"
     CDS             complement(12803..14143)
                     /locus_tag="OQQ72_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS2011348.1"
                     /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD
                     NAGHTGIGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA
                     WTFELHVNAVAALEAALLDLLGKALNVPVCELLGPGKQRETITVLGYLFYIGDRTKTD
                     LPYLENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT
                     VRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE
                     FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT
                     WGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP
                     DAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH"
     gene            complement(14145..15515)
                     /gene="gudP"
                     /locus_tag="OQQ72_001575"
     CDS             complement(14145..15515)
                     /gene="gudP"
                     /locus_tag="OQQ72_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GudP"
                     /protein_id="HCS2011349.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(15932..16381)
                     /locus_tag="OQQ72_001576"
     CDS             complement(15932..16381)
                     /locus_tag="OQQ72_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HCS2011350.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(16399..17181)
                     /gene="truC"
                     /locus_tag="OQQ72_001577"
     CDS             complement(16399..17181)
                     /gene="truC"
                     /locus_tag="OQQ72_001577"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HCS2011351.1"
                     /translation="MLEILYQDEWLVSVNKPSGWLVHRSWLDRDEKVVVMQTVRNQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(17181..17510)
                     /locus_tag="OQQ72_001578"
     CDS             complement(17181..17510)
                     /locus_tag="OQQ72_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HCS2011352.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(18132..18677)
                     /gene="syd"
                     /locus_tag="OQQ72_001579"
     CDS             complement(18132..18677)
                     /gene="syd"
                     /locus_tag="OQQ72_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HCS2011353.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            18745..19593
                     /gene="queF"
                     /locus_tag="OQQ72_001580"
     CDS             18745..19593
                     /gene="queF"
                     /locus_tag="OQQ72_001580"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HCS2011354.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            19705..21069
                     /gene="ppnN"
                     /locus_tag="OQQ72_001581"
                     /gene_synonym="ygdH"
     CDS             19705..21069
                     /gene="ppnN"
                     /locus_tag="OQQ72_001581"
                     /gene_synonym="ygdH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HCS2011355.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            21626..22915
                     /gene="sdaC"
                     /locus_tag="OQQ72_001582"
     CDS             21626..22915
                     /gene="sdaC"
                     /locus_tag="OQQ72_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease SdaC"
                     /protein_id="HCS2011356.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            22973..24340
                     /gene="sdaB"
                     /locus_tag="OQQ72_001583"
     CDS             22973..24340
                     /gene="sdaB"
                     /locus_tag="OQQ72_001583"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HCS2011357.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            24452..25207
                     /gene="xni"
                     /locus_tag="OQQ72_001584"
     CDS             24452..25207
                     /gene="xni"
                     /locus_tag="OQQ72_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HCS2011358.1"
                     /translation="MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTH
                     AVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNE
                     ADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGV
                     QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKL
                     ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR"
     gene            complement(25312..26449)
                     /gene="fucO"
                     /locus_tag="OQQ72_001585"
                     /pseudo
     CDS             complement(25312..26449)
                     /gene="fucO"
                     /locus_tag="OQQ72_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(26477..27124)
                     /gene="fucA"
                     /locus_tag="OQQ72_001586"
     CDS             complement(26477..27124)
                     /gene="fucA"
                     /locus_tag="OQQ72_001586"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HCS2011359.1"
                     /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG
                     IPYEKLTESHIAFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS
                     ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC
                     EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         6579 a         7296 c         6555 g         6776 t
ORIGIN      
        1 tcccggaggc tggcattttt aaatcagata aagtcagtct tatgcctggc ctttgatctc
       61 tttacgaccg ttgtacggtg ctttttcgcc cagagcttct tcgatacgaa tcagctggtt
      121 gtatttagca acacggtcag aacggctcat agaaccagtt ttgatctggc ctgcagcagt
      181 accaacagcc aggtcagcga tggtagcgtc ttcagtttcg ccagaacggt gagagataac
      241 tgcagtgtag ccagcatctt tcgccatctt gattgcagcc agagtttcgg tcagagaacc
      301 gatctggttg aatttgatca ggatggagtt agcgatacct ttttcgatac cttctttcag
      361 gatcttggtg ttggttacga acaggtcgtc accaaccagc tggattttgt cgcccagaac
      421 tttggtctgg tatgcgaaac cgtcccagtc agattcgtcc agaccgtctt cgatagaaac
      481 gatcgggtac tgtttggtca gttcttccag gaagtgagtg aattcttcag aggtgaacgc
      541 tttgttgcct tcgccagcca gaacgtattt accatctttg tagaattcag aagctgcgca
      601 gtccatcgcc agagtgatgt ctttgcccag ttcataacca gcagctttaa cagcttcagc
      661 gataacagcc agagcttcag cgttggaacc caggttcggc gcatagccac cttcgtcacc
      721 aacagcagtg ttcatgcctt tcgctttcag aacttttgcc aggtgatgga aaacttcaga
      781 acccatgcgg atggcttctt tcacagtttt cgcgccaacc ggctgaatca tgaattcctg
      841 gatatcaacg ttgttgtcag cgtgctcacc accgttgatg atgttcatca tcggaaccgg
      901 catagagtat ttgcccggag taccgttcag ttcagcgatg tgctcgtaca gcggcatacc
      961 tttagcagct gcagcagctt tggcgttagc cagagataca gccaggattg cgttcgcgcc
     1021 gaatttggat ttgttttcgg tgccgtccag gtcgatcatg atcttgtcaa tgccagcctg
     1081 atctttagca tctttgccaa tcagcgcctg agcgatcggg ccgtttaccg cagcaacagc
     1141 tttggttacg cctttaccca ggaaacggga tttgtcgcca tcgcgcagtt ccagagcttc
     1201 acgggaacca gtagaagcac ctgacggagc agctgccata ccgacgaaac caccctccag
     1261 atgtacttcg gcttcaacag tcgggttacc acgggagtcg atgatttcac gaccgatgat
     1321 ttttacgatt ttggacatta ggttttcctc aagtcactag ttaaactgaa actccagaca
     1381 aacaacacgt acccagggta cgcgttgccg ttctaacttt tttacttact tcgcctgacg
     1441 tttctggaac tcgctggcgg ctttcacaaa gcctgcaaac agcgggtgac catcacgtgg
     1501 agtagaagta aactccggat ggaactggca agccacgaac cacgggtgat tcggaacttc
     1561 gatgatctcg accaactgat catccccgga acggcccgca acgcgcagac ctgcatcttc
     1621 aatctgtttc aacagcatgt tgttgacttc gtaacggtga cgatgacgct caacaattgt
     1681 cggcgcattg tacagctggc gaaccaggct atcgtcaacc aactggcact gctgtgcgcc
     1741 gagacgcatg gtaccgccga gatcgctctt ctcgctacga acttcaacgt tgccgttttc
     1801 atcgcgccac tcggtaatca gcgccacaac cgggtactta cagtctggca caaattccgt
     1861 agagttggcg ttctccatgt tggcaacatg gcgagcgtaa tcaattaacg ccacctgcat
     1921 acccaggcaa atgcccagat aaggaatatt gttctcacgc gcaaaacgcg cggtcgtaat
     1981 catgccttct acgccacgat agccgaaacc gccaggtacg aggattgcgt ccagaccttt
     2041 aaggatttca acgccgcgcg tttcaacatc ttgtgaatcg atcagtttga tgttgacgct
     2101 gacacgattc ttcagcccac cgtgtttcag tgcttcgatc actgatttat aagcatccgg
     2161 cagttcaatg tacttgccga ccataccgat ggtgacttca cttaccgggt tcgcttcttc
     2221 gaagataacc tgttcccatt cggacagatt cgcttccggg cagtttaagc tgaatcgttt
     2281 acaaatataa tcgtccagcc cctgagattt caacaggccc ggaattttat agatggaatc
     2341 gacgtctttc agagaaataa ccgctttttc cggaacatta cagaacaatg caatcttcgc
     2401 acgttcgttc gccggaacag cgcgatctga acgacaaatc aggatgtcag gctggatacc
     2461 gatggagagc agctctttta cagagtgctg agtcggtttg gttttgactt caccagacgc
     2521 tgccatgtac ggcaccagcg tcaggtgcat aaacagagtg tgctcacggc caatttcaac
     2581 agccatctgg cgaatcgctt cgaggaacgg caaggattcg atatcaccta ctgtaccgcc
     2641 gatttctacc agtactacgt catgaccttc gccaccttcc agcacgcgct ctttgattgc
     2701 gttagtgatg tgcggaataa cctgcacggt tgcgccgagg tagtcaccgc ggcgttcttt
     2761 acgcagaacg tcagagtaga tacgacccgt ggtgaagttg ttgcggcggc tcattttggt
     2821 acgaatgaaa cgctcgtagt gccccaggtc caggtcggtt tcagcgccgt cttcagtaac
     2881 gaacacttcc ccgtgttgga ttgggctcat agtacctgga tcgacgttga tgtacggatc
     2941 cagtttcatg atggtcacat tgaggccacg ggcttcaaga atggctgcga gggaggctgc
     3001 ggcaatgcct ttacccagag aggatacgac cccgccggtc acaaaaatat agttcgttgt
     3061 catgctgaac ctgagaagtt aggttgaaaa gacgatggaa taaccaggac gggaaagcag
     3121 tatacccgaa catgacctgt gccacaaact ttcattatcc ctcctcttcg ccagcgcact
     3181 attgaaatca ggagtgagaa aatagcccct ttggggtaaa tgtttttgac gcaaatcaag
     3241 cgcttgtcat ttaaaaaatg acacaaatgg cacttgaccg cgtaattccc ttagagatca
     3301 atttcctgcc gttttacctg ttgccagact tcttccattg tttcgaggtc aacacctgtc
     3361 atttccagtc cacgcgcggc aacaatacgc tccacttcgc gaaaacgacg ctcgaatttt
     3421 tcgttcgctt tttgcaatgc gatttctgct ttcgtcccta aatggcgagc cagattaacc
     3481 gtggcaaaca gcaggtcccc catttcctcc tccagtttag cctggtcgac aacagcctgc
     3541 cgcgcttcgt acatcacctc gtcgatctct tcgtagactt tatcaaccac cgggccaagc
     3601 gtcgtccagt cgaagccaac gttggcgcaa cgtttctgga ttttttgcgc ccgcattaaa
     3661 gccggtaaac tacgaggaat atcgtccagc gccgaatgct gcgctttctg cgcgcgctct
     3721 tcggttttga tttgctccca acgggcaagc acttcactac tgttttcggc agaactatca
     3781 gcaaaaacat gcggatggcg acgctctaat ttatcgctaa tagcagcgca aatatcatta
     3841 aagtcaaagc gcccttcttc ctgagccatt tgcgcgtaaa acaccacctg gaatagcaga
     3901 tcgcccagtt caccgcgaag atcgtcaaaa tcttcacggg cgatggcgtc cagcacttcg
     3961 taggtttctt caagggtgta aggcgcaatg gtggcaaatg tctgctcttt atcccacggg
     4021 cagccgtttt ccggatcgcg caggcgctgc ataatagtga gcaaacgatc gatttgattc
     4081 attgaattgt cctgaaaatt gcgggtctgt caggtggaaa cctgtgacca gaatagaagt
     4141 gagttagtaa cactacccaa tcagtacgtt aattttggct ttaatgagtt gtaattcctc
     4201 tggggcaact gttcctttct tcgttgctcc tcttgcccgc caggcgattc tttttacctg
     4261 atcagctaac gctacgccat cacgttcctg accggataaa acaacttcga acggatatcc
     4321 ttttgattgc gttgtacaag gaacacacag acacatacct gttttgttgt tgtacatgaa
     4381 aggactcagg acaacagctg gacgatgtcc agcttgctcg ctaccttttg tcgggtcaaa
     4441 atcaacccaa atcagatcgc ccatatcggg tacgtatcgg cttaccatta ccagacttcc
     4501 ttatctttcg gctctcccca gtcgatattc tcgtggaggt tttccggcgt gatgtcgttg
     4561 accagttcag caagcgtaaa tacgggctct ttacgcactg gctcaataat taatttgcca
     4621 tccaccaggt caatcttcac ttcatcatca atattcagat tgagcgcctg cattaacgta
     4681 gccgggatcc gcaccgccgg tgaatttccc caacgcttta cgctactgtg gatcatcacc
     4741 ctttcctcaa accgctatca tatgtagata cagtatatat caatctacat tgtagatacg
     4801 agcaaatttc tgcctaactc ccgtgcaacc gacgcgcgtc gataacatcc ggcacctggt
     4861 tgagtttacc cagcacgcgg cccagcacct gcaggttgta aatctcaatg gtcatgtcga
     4921 tggtcgccag ttgctgtttg gtgtcgctac ggctggcaac gccaagtacg ttcaccttct
     4981 cgttggcgag aatggtcgtg atatcacgta acaacccact acgatcatta gccaccacgc
     5041 ggaccaccag cgaatatccg gcggagtagc tctcacccca taccgcgtca acaatgcgtt
     5101 ctggcgcatg agagcgcagt tccgccagtt gttcgcaatc ggcgcggtgt actgaaatac
     5161 cgcgcccctg ggtaatgaag ccgacaatct catctccagg aatcggctgg cagcagcgcg
     5221 cgatgtggtg catcaggttg ccaacacctt cgactaccac gcgaccgtta tctttactgc
     5281 ggttttgcgg cgtgtagctt ttttgctgaa gttgcttcag cgcggcggcg tcctgctctt
     5341 cggcactcgg cttattaaat tgcgattgca ggaagttcac catctgattg agacggatat
     5401 ccccgccacc aatcgccgcc agcaactcgt cgacatcatt aaagttgtaa cgcggcagca
     5461 gatgtttttc tgcttctttc aggctgatcc ccagatgttc cagctcgtcg tcaaggattt
     5521 gccgcccagc cagaatgttt ttgtcacggt cctgtttacg gaaccaggcg tgaattttcg
     5581 aacgcccacg gctggttgtg acgtaaccga ggtttgggtt taaccagtca cggctggggt
     5641 tcggctgttt ctgggtgata atttcaatct ggtcgcccat ctgcagctgg taggtgaacg
     5701 gcacaatgcg cccgccaatt tttgccccga tgcagcggtg tccgacatca ctgtggatgt
     5761 ggtaagcgaa gtccagcggc gttgatcccg caggcaaatc aacgacatca cctttcggcg
     5821 taaagacata cacccggtcg tcaaagacct ggctgcgtac ttcgtcgagc atttcgccgg
     5881 aatcagccat ctcttcctgc cacgcaatca gtttacgcag ccaggcaatc cggtcttcat
     5941 gtcccgaacg tgcgccgcca gctgccgcgc cctctttata tttccagtgc gcagcaacac
     6001 ccaactctgc atcttcatgc atctgtttgg tgcggatttg gatctcaacg gttttgccac
     6061 ctggccccag aaccacggta tgaatagact gataaccgtt tggtttcggg ttagcgacat
     6121 aatcgtcaaa ctcatccggc aggtggcgat agtgagtgtg cactatcccc agtgcggcat
     6181 aacaatcctg taaacgctcg gcgacaatac gtaccgcacg cacatcaaac agctcatcga
     6241 aggcgaggtt ctttttctgc attttgcgcc agatgctgta gatgtgtttc ggacggccat
     6301 acacttcagc tttaacgcct tcagctttca tctcagcgcg cagatgaccg acaaactctt
     6361 cgatatagtg ttcgcggtcg agacggcgtt catgcagcag ttttgcgatg cgtttgtatt
     6421 cggtcgggtg cagataacgg aagcagtaat cttccagctc ccatttcagt tgcccaatcc
     6481 caagacggtt cgccaacggc gcgtagatat tggtgcactc ttttgccgcc agtacgcgtt
     6541 catcttccgg cgcatctttt acttcgcgca gatgagcaat acgctccgcc agtttgatga
     6601 ccacgcagcg aaaatcatcg accatcgcca ataacatccg gcgaacgtta tcgacctgtt
     6661 cggaggaaac agaatcagtg tgcgtcgctt tcagctggcg gatcgccgcc atatcacgca
     6721 cgccgtgaat aaggttaacg acagacttac cgacgctctc acgcagcaca tcttcgctga
     6781 ctacgttggc atcggccaga gggaacagca gcgccgcccg cagcgtgtca atgtccatac
     6841 ttaatgtcga gaggatctcc accatctcaa caccacgcca caataacaga ctggcatccg
     6901 gatgcccctg cgtctgctgc agacaatacg cccaggtttc ggctaagcac tcacacgact
     6961 tctggctggt aatacccaga cttgcgatcc atttttccgg atcaaattca ccagccttat
     7021 tgatatgtgc acttcttacc gcaaccattg tcctctcctt tagggaccag acctgccgaa
     7081 atcggcaaat cgtaactatt taacgcgcga gaaaagtacc atcgattcca gatgtcccgt
     7141 gtgtgggaac atatccagca tcgccagtcg cgcaatggta tatcctgctt ttaataacgc
     7201 ttcgctatcc cgagccagcg ttgcagggtt acaggataca taaactatac gaataggttc
     7261 cagttttata atttgctgca taacacctgc ggcacctgct cgcgccgggt ccagcaacac
     7321 tttatcgaag ccgtttttcg cccacggctg ctttgtgaca tcttcttcaa gattttcgtg
     7381 ataaaacgtc acattctgta agccattaag acgcgcattc tgctggcctt tttccaccag
     7441 cgccggaaca ccttctacac cgaccacact ggcagcttgt gtcgccaatg gcagtgtaaa
     7501 gttgcccata ccgcagaaca gatccagtac gcgatcttca ggttgcacat ccagccattc
     7561 caacgcactc gctaccattt tttggttcac acccgcattg acctgaataa aatcgcgcgg
     7621 gctaaaagtt aagcgcaacc cgttagagtc ataccagggc atctcaccag agacggtttc
     7681 gagtatctca ctatcggggg cgagatacag atccaggcct tcagaatgcg aaaagcgttc
     7741 cagtttttcg cgatctgccg aacttagcgg tgcggtatgg cgcaaaatca tcagcgtgcc
     7801 gctggttgcc tgtaccagtt caacatgacc aagatggcgc attgcttgta agctgcccag
     7861 gcatgccctg actttgggca gcaatgcttc aagttggggc actaaaatgg gacattgttt
     7921 aacgtcgaca atgtcactgg agcccgcttt gcgaaacccc atctgaagtt gctgtgtttt
     7981 cggtaagtag ttcagactta aacgcgcgcg acggcgatag ccccagggaa catcggcgat
     8041 cacttcagag acttcgtgtt tcattaatcg ggcgagtgcc gcacttttgc ttcgctgctg
     8101 taaatccacg ctggcgtgtt gttgctgaca gccgccgcat acgccaaaat gaggacagcg
     8161 tggcgtttcg cgttccgggc tatcgcttaa ccggcgtacg actttagcgc gggcatactg
     8221 ttttttatct tcagtaacag taacttccgc gttttcctgc ggcaataatc cggggataaa
     8281 tagcgttttg ccgttatgtc gcgccacgcc ctgaccaaaa gagtcgaggt cgttgactga
     8341 aacggttatg atctgacgcg tcgtcgtgcg tcgttttgca gagtagaatt gcgccattgg
     8401 cgagactttc tcaatttaac agtgtgacct taattgtcac ataacggaac tccatgacca
     8461 actacagcct gcgcgcacgc atgatgattc tgatcctggc accgaccgtc cttattggtt
     8521 tattgctgag tatatttttc gtcgtgcatc gctataacga cttgcagcgt caactggaag
     8581 atgcaggtgc cagcattatt gagccgcttg cagtttctac tgaatatggc atgagcctgc
     8641 aaaatcgcga atctatcggt cagttaataa gcgtactgca tcgtcgccat tccgatattg
     8701 ttcgcgcgat ttcggtttat gatgaaaata accgactctt tgtcacctcc aattttcatc
     8761 ttgatccctc atcaatgcag ctcggcagca acgtgccgtt tcctcgccag ctcactgtca
     8821 ctcgtgacgg cgatattatg atcctccgca cgccgattat ttctgagagt tactcccccg
     8881 acgaatcgcc cagtagcgat gccaaaaata gtcaaaatat gttgggatat attgcgcttg
     8941 agctggatct taaatcggtt cgcttgcagc aatataaaga gatctttatt tccagcgtga
     9001 tgatgctgtt ttgtatcggt attgcgctta tttttggctg gcgcttaatg cgcgatgtaa
     9061 ccggtccgat tcgcaacatg gtgaataccg tcgaccgcat ccgtcgcggg caactcgaca
     9121 gccgggtgga aggatttatg ctcggcgagc tggatatgct gaaaaacggt atcaactcga
     9181 tggcaatgtc gctggctgct tatcacgaag agatgcagca caatatcgac caggcgacgt
     9241 ccgatctgcg tgaaacgctg gagcagatgg aaattcagaa cgttgagttg gatctggcga
     9301 aaaagcgcgc ccaggaagcg gcgcgtatta aatccgagtt tctggcaaat atgtcacacg
     9361 agctgcgtac accactgaat ggtgttattg gctttacccg cctgacgctg aaaacagaat
     9421 taacaccaac gcagcgcgat cacctgaata cgattgaacg ttcggcaaat aatttgctgg
     9481 caattattaa tgatgttctc gacttctcga aactggaagc aggtaagctg attctggaaa
     9541 gtattccatt cccactacgc agcacgctgg atgaagtcgt tactctgctg gcacattctt
     9601 ctcacgataa agggttggaa ctgacgctca atattaaaag cgacgtgcct gataacgtga
     9661 tcggcgaccc actgcgatta cagcaaatca tcactaacct ggtggggaat gcaattaaat
     9721 tcaccgagaa tggcaacatt gatattctgg tagaaaaacg tgcgctgagt aataccaaag
     9781 tgcagattga agtgcagatt cgggataccg gcattggtat tcctgaacgc gatcaatcgc
     9841 gcttattcca ggccttccga caggctgatg ccagtatttc ccgccgtcat ggtggcaccg
     9901 ggctggggct ggtgattaca caaaaactgg ttaatgaaat gggcggcgat atttcgttcc
     9961 atagccagcc gaatcgcggt tcaactttct ggttccacat taatctcgat ctgaacccga
    10021 acattattat cgaagggcca tccacccagt gcctcgcagg taagcgcctg gcctatgtcg
    10081 aaccaaactc cgcagcagcg caatgcacgc tggatatttt aagtgaaacg ccgctggaag
    10141 tggtttatag cccaacgttc tccgcgctgc ctcccgcgca ttacgacatg atgttgttag
    10201 gcatcgcggt gaccttccgc gagccgctaa caatgcaaca tgagcgatta gcgaaagcgg
    10261 tatcgatgac cgatttcctg atgctggcac ttccttgcca tgcacaagtc aatgctgaaa
    10321 aactcaagca agatggtatc ggcgcgtgtc tgctgaaacc attaacacct acacgcctgt
    10381 tgcctgccct gacggaattt tgtcatcaca aacaaaacac gcttttgcct gtaaccgatg
    10441 aaagtaagct ggcaatgaca gtcatggcgg ttgatgacaa ccccgctaac ctgaaactta
    10501 tcggcgcatt gctggaagat atggtgcaac atgtggaact ttgcgatagc gggcatcagg
    10561 cggttgaacg ggcgaaacag atgccgttcg atttgatctt aatggatatt caaatgccgg
    10621 acatggatgg cattcgggcc tgcgaactca tccaccagct cccccatcag caacaaacgc
    10681 cggttatcgc ggtaacggcg catgcaatgg ccgggcaaaa agagaagctg cttggcgcag
    10741 ggatgagcga ttatctggcg aaaccgattg aagaagagcg attgcataat ttgttgttgc
    10801 gctacaagcc tggcagcggt atttcctctc gcgtcgtgac gcccgaagtc aacgaaattg
    10861 tggtgaaccc gaatgcgacc ctcgactggc aactggcact acgccaggca gcaggaaaaa
    10921 ccgatttagc gcgcgatatg ctgcaaatgt tactcgattt cctgcctgaa gttcgcaaca
    10981 aagttgagga acagctggtt ggagaaaacc cggaaggcct ggttgatttg attcataaac
    11041 tgcatggcag ttgcggctat agcggtgtgc cgcgtatgaa gaatctctgc caactgatcg
    11101 aacaacagct acgtagcggt actaaagaag aagatttgga gccggagctg ctggaactgt
    11161 tggacgagat ggataatgtc gcgcgcgaag ccagcaaaat tctcgggtaa cggacgtctt
    11221 gtcgagtagc aatcggcttt ttatgacgct ggtttcagat tggtgacaaa gtgcctgtgt
    11281 ttatgccgga tgcggcgtta acgccttatc cggcctacaa aaccaattaa attcaatgaa
    11341 ttaaaaaatg atgtagacct gatacatagc acaacaggct attttgcgtt tagcatcagt
    11401 ctcaagccgg ctccagatag agccggtttt ggttttctgt cttaacgcac catgcacggg
    11461 cgcttgttat cgaacgtcca gccaggaatc agatactgca ttcccatcgc attgtcacgc
    11521 gcgcaaagcc cgtgtttctg atacagctca tgggctttca tcacttgatc catatcgatt
    11581 tctacaccca gccccggttt ttccggcacc tgaaccagac cgcctttgat ctcaaacggt
    11641 tctttggtca agcgctgatt gccttcctgc caaatccagt gcgtatcaat cgcggtgatt
    11701 ttacccggtg cagcggcggc aacatgggta aacatcgcca gggaaatatc gaagtggttg
    11761 tttgagtgtg aaccccaggt caggccaaat tcatggcaca tttgcgccac acgtaccgaa
    11821 ccttgcatcg tccagaaatg cggatccgcc agcgggatat caacggattg cagggagagc
    11881 gtatggccca tctgccgcca gtcggtggcg atcatattgg ttgcggtcgg caggccagtt
    11941 gcgcgacgga actctgccat cacttcacgc ccggagaaac cttgctccgc accacacgga
    12001 tcttctgcat aagccagcga ccctttcagg tatttaccaa ttttaatcgc ttcgttcagc
    12061 gaccaggcac cgttaggatc gagcgtaata cgcgcctgcg ggaagcgttg cgccagtgcc
    12121 acaatagact cggcctcttc ttccccggcc agtacaccgc ctttcagttt gaaatcgttg
    12181 aagccatatt tttcatacgc cgcttccgcc aggcgcacca ccgcatccgg cgtcatcgct
    12241 tcttcatgac gcaggcgata ccagtcgcat gagtcatccg gctggctttg atacggcagc
    12301 ggtgtggctt tgcgatcacc gacgaagaac agataaccga gcatttcgac ttcgctacgc
    12361 tgttgaccat cgcccagcag ggatgccacg tttaccccca gatgctgccc cagcagatcc
    12421 agcattgccg cttctatccc ggtaactaca tgaatagtgg tacgcaaatc aaatgtctgc
    12481 aaaccgcgcc caccagcatc acgatcggca aaagtattac gcaccagcgt cagaacgttt
    12541 ttgtattcac ccagcgtttt acctaccacc agcggaatcg catcttccag cgttttacgg
    12601 attttctcgc cgccgggaat ttcccctacg ccagtgtgac cagaattatc tttgataatc
    12661 ataatattac gcgtaaagaa cggtgcgtgt gcaccactca gattcatcag catactgtca
    12721 tgacccgcca ccgggatgac ctgcatttca gtaacaacag gcgtcgtaaa ttgagaactc
    12781 atatttatgt cctttttcag aatcaatgac ggccgaaaac gggacgttta cggtcaaagg
    12841 tccagccggg gatcaggtac tgcatcggac ctgcgtcgtt acgcgcaccg ccaggcagac
    12901 gtttataggc ctcatgtgcc ttttgtacct gttcccagtc cagttccacg cccagaccgg
    12961 gcgcatcagg aacggcaatt tttccgtttt taatctccag cggatttttg gtcaggcgac
    13021 aatcgccctc ctgccaaatc cagtgggtat cgatagcggt aggattaccc ggtgccgccg
    13081 cgcccacatg ggtaaacatc gccagagaga tatcgaaatg gttattagaa tggcagcccc
    13141 aggtcagccc ccagtcgtcg caaagctgcg ccacacggac tgcaccggaa agcgtccaga
    13201 agtgcggatc ggcaagtgga atatctaccg cattgagcat caccgcatga cccatttcgc
    13261 gccagttggt ggcgatcatg ttagtcgcga cgggcaagcc ggtcgcccgc cgaaactccg
    13321 ccataacttc acgaccggag aaaccctgtt ctgcgccgca tggatcttcg gcataggtaa
    13381 gaacatcatt cagccctttg catagagaaa tggcttcatc aagtagccag gcaccgttgg
    13441 gatcaacggt aatccgcgca tcagggaagc gtttcttcaa tgcacgaaca gtgtcgattt
    13501 cttgctcgcc aggtaacacc ccgcccttaa gtttgaaatc tttaaagcca tagcgatcct
    13561 gtgaggcttc cgccagacgc acaacggctt cgctgttcat cgctttctga tggcgcaact
    13621 gataccactc atggttgccc ggcgtatttt ccagataagg aagatcggtt ttggtccgat
    13681 caccgatata aaacagataa ccgaggacgg taatagtctc gcgttgcttg cctggcccca
    13741 acagttcgca gaccggaaca ttcagcgcct tacctagcag gtcaagcaag gcggcttcca
    13801 gcgccgccac ggcattaacg tgcaattcaa aagtccaggc acctttgccg aaggtatcaa
    13861 aatcggctgc ctgattacct ttatgcacct gctgaaccac tttattcagg cgcgcaactt
    13921 cctggcccag aaccatcgga atagcatcga ccagtgtttg ataaatcacc tctccgcccg
    13981 gcgcttcacc aatgccggta tgcccggcgt tatcggtgag taccacaata ttgcgggtga
    14041 aatatgcgtt atgtgcccca ccaatattaa gcaacatgct atcgtgcccg gcgaccggaa
    14101 tgactttcat atcagtaata acaggactgg attgtgtcgt catcttattg ccccgcgaca
    14161 ggtttcagct cgatacgctt gatatcgccc accagcacca ggtagctcag taccgcgatt
    14221 aaggcatgaa caccaacata aatcagcgcc ccattaaagg agccagtcgt gccaacgata
    14281 taaccaattg cgattggcgt gacgatgcca gaaatgttac cgaacatgtt gaacaggcca
    14341 ccggaaagac cgctgatctc ttttggcgcg gtatctgcca ttactgccca acccagcgcc
    14401 ccgatgccct taccgaagaa ggccagcgcc ataaagccga tgatcatcca ctcaacgttg
    14461 acgtagttgc agaacaccat caccatcgac agcaacatgc ccattacgat cggtgtttta
    14521 cgcgcaatgt tcagcgatcc cgtgcggcgc atcagccagt cggaaataat cccacccagc
    14581 acaccgccga taaaaccgca aaccgccgga acggaagcca caaagcccgc tttcagaatt
    14641 gacatcccac gcgcctgcac cagataaacc ggaaaccagg taatgaaaaa gtaagtcagg
    14701 gcgttgatac agtactgacc gatataaacg ccgatcatca tccgtgaccc gagcagttgt
    14761 ttgatctgcc cccacttcac gctgaacggc actttaactt tggtgttttg ctgatccata
    14821 ttgatcagcg cgccacccgc ggcgatgtac tccagctctt tctgatttac ccccggatgt
    14881 tgatttggct cgtggatgac tttcaaccag ataaagctga tgacaatccc cagaccgccc
    14941 ataaagaaga agacgtgtga ccagcccact tcatgcgtca gccagcccat aatcggcgcg
    15001 aagatcaccg ttgcgaagta ttgagcggag ttaaaaatcg acaccgccgt tcccctttcc
    15061 tgcgccggaa accaagccgc aacaatgcga ctgttgccgg ggaaagatgg cgcttcagca
    15121 agcccgacca ggaagcgcag agtaaacagg gcaacgataa tgccgaatcc actaaagata
    15181 tcgacgaagc cttgcagcaa ggtaaacatc gaccagataa agatcgacca gaagtagacg
    15241 cgttttgaac caaaacgatc cagcaaccaa ccaccaggga tctgcccgat aacataagcc
    15301 catgagaagg cagagaacac atagcccatt cccacgggat caaggccgat atctttggcc
    15361 atttccgaac cggcaataga aagcgtagcg cggtcgccgt agttgaagga tgtgacgata
    15421 aacaacatca ccactatcca gtaacgagca ttcgtgcgtt tttccacact gctcgcagcc
    15481 tgacttaaag aactcgttgt tgcactcctg aaaattcgcg ttagccacgc taactctgga
    15541 ctgcgacata gccaggaaat cagaggtgac gtagggtgtt ttttgccgtt tttataggtc
    15601 gttcgccgaa tacggcgcgt gtttatatct ggcaatagca gtataaaaag cgcgccatag
    15661 cggctcaccg tgcaacaaca caacattaat gcgttcaatg aggcccgatt ttggcattag
    15721 ccctggacgg tggaatccac ttcacggaaa tgaaaacaag aacaagaaag gaagggttaa
    15781 aacgaagaaa taaagaagag tatgaaatgg atcgcttgac tccaggcaaa cgccagtaaa
    15841 aatccgcgct atgaagcagt ttttactggc atttgcctga aaagattcga ttcagcaccg
    15901 ctaaaacgac atttaccgct cgctgaacat atcaggacaa cagcgtgccc cactgttcga
    15961 cccacggatt tgattccgtt tccggttccg ggttctcact ggcgtcaatc aacagcattt
    16021 cgccaactcg ctgagcgctc tgttcctgca acaaggcatc gaactgtttg ccgccattgc
    16081 agaaatttac ataactgctg tcgccgagcg caatcacgcc ataacgcaga ttcggctgga
    16141 agcccagact atctttgatt ccctgaaaga gcggcacaat gctatcagga aggtcgccct
    16201 gcccggtcgt ggacgtaacc accagaacat acttatcctg ataaggcagc cagtcgctta
    16261 attcaggatc ttcaaatacc gttgctttgt ggccctgtgc ggtcagaatt gcttctgctt
    16321 cttccgccac taacagcgaa tttccgtaca tggtgccgac aaaaatacca atttccgcca
    16381 taccgttttc tccctggatt aggaacttat ctctccatcc tgacccgatg gcgcactgaa
    16441 ctcaaccctt tcattttcag gaagcagacc gcgccagcca aattgtgata acgcctgcat
    16501 ccaggtgtcg tccaggcccg cgtgaatagt cagcggctcg ccagtaaaag gatgcgtcaa
    16561 tgacaactga ctggcatgta gcattaaccg ctggaggcca aaatgctcag caccgctgcg
    16621 attctggcgt aaatcgccat gtttgctatc gccaataatc ggatgacgca aatgggcaag
    16681 atgtcggcga agctgatgtt tgcgtccggt tttcggctcc agttccacca ggccgtagcg
    16741 cgtggtcggg taacgtccgg tcgctaccgg catttctacg gtcgccagac cgcgataatg
    16801 cgtcactgct ggctgcgggc ctttatcttc gcgggcaaat ttatcagcga ttttgtccag
    16861 ttcttccacc agtggataat ccagcaccgc ttcttccatc aaccagccgc gcacaatcgc
    16921 atggtaacgt ttctggattt ggtgctgttc aaactgttgt gccagcagcc gtccggcctc
    16981 gctggataat cccatcaaca acacaccaga agtgggtcgg tccagacgat gagcagtaaa
    17041 aacatgctgt cctatctggt tacgcacggt ttgcatgacc actactttct cgtcgcgatc
    17101 cagccagcta cggtgaacca gccagccgga gggtttattt accgaaacca gccattcatc
    17161 ctgatagagt atttccagca ttagctcgca tcatccgcaa aaagagcatc cagtttttcc
    17221 aactcagcca gaataagcgc gtgttgcgga tggtccgtcg ccagcgccat ttcataatag
    17281 ggtgcaacag caaaagcgcc cggtaacggc tggttgttat ttaacaaatc gtgcattcgc
    17341 gggatcagca cccactgcaa ccactccagt ggttccatgg tgtccataaa gaacggttgg
    17401 gtactattaa attgatgcgg ctggggttca tcgtttcgcc agtgctgatg ttcacgcagt
    17461 aacgcttcaa gcgcctgcaa ctggagacga acgcggtcat gagtggtcat aaagcaacct
    17521 caataagaaa aactgccgcg aaggatagca ggaataaaaa aagggagcac tgtattcaca
    17581 gcgctcccgg ttcgtttcgc agcattccag ctacttttgt tgctccctgc tcatccttga
    17641 caacttttcc tctggccttg cggccaatcg ttcatcctga actattgctt cctgctcaca
    17701 ccaccccgat gtgatacttc atcctgaagt gtccttggcc ttcctgacca gccgaatcat
    17761 cctgaccggt tctcattctc catcctggag gtgtccttta acgcgtcctg cgtcatcctc
    17821 ttcgcttcat ccagaagcct ttccctgaaa caccatcctg gtgtgtcctg cagaagtgtc
    17881 atcatcctga tgttcacttc gttgtctgac tccctgtcga cgaagataga atcgtctttt
    17941 tcgcgaagtc ttacaaggcg cttacagaca atgccttaag gaaaatttca tatgaaagtt
    18001 aagaattaac aatcaacatt ttgattttaa atgaaaataa cgattcttat ctttttaagt
    18061 attcgcttat ttcctggcga tctcctacag agtctgtaag agatctctca caaccagatg
    18121 gggtatttgg attacagaag aggcttaagt tgattaagga attccgcaag atttgaggct
    18181 aaatgcgtcc gtttacgtgt tcccagcgtc tctttgcaca cttcaccgga gagattacac
    18241 accgagatga cctctaactc ttcttccagc gtcgcgataa atagcgtggg cggcagtttt
    18301 agccttttct gagtcaccag atgaccaatc agattttcct gcacccgacg gaagtcgtct
    18361 tcactccagg tttgcagcaa tgtcagtttg atatcgccaa actgcgcgtg catatccccg
    18421 gcaaactgag tcgtataaaa ggtatgaatt gtgggttgta tcacaatatc aaaagcgcgt
    18481 tcaaccgcgt ttacattttg ttccccggta aacggctggg gttgccagta tacggcatct
    18541 tcggtagttg aaataatgca cggtgaagga acaccgtaca gttcctcact taacggccag
    18601 cttttatgct cttcatgcca cgcatcgcag tagcgtgcag taaaatcttt cagggcttgt
    18661 gcggtcaaat cgtccactaa tttctctctt cacttaaacc agatacactt gtcgtttagt
    18721 ttatctggtt tatgacggtg aaacatgtct tcttatgcaa accatcaggc acttgcgggc
    18781 ctgactcttg gaaaatcaac cgattaccgg gatacctatg acgccagcct actgcaaggc
    18841 gttccacgca gcctgaatcg cgacccgctg ggtctgaaag cggataacct gccttttcac
    18901 ggtacggata tctggacgct gtatgaactt tcctggctga atgcgaaagg tttgccgcag
    18961 gtcgctgtcg gtcatgttga acttgattac accagcgtaa atctgattga gtcgaagagt
    19021 tttaagctct atctcaacag ttttaaccag acgcgtttta ataactggga tgaggtgcgc
    19081 cagacgctgg agcgcgactt aagcacttgc gctcagggta agattagcgt ggcgttatat
    19141 cgtcttgatg aactggaagg ccagccgata ggtcatttta atggcacttg cattgatgac
    19201 caggatatca ctatcgataa ctatgaattc actactgact atctggagaa tgccacctgt
    19261 ggtgaaaaag tagtggaaga gacgcttgtc agccacctgc tgaaatcaaa ctgcctgatc
    19321 acccatcaac cagattgggg ttcgatccaa attcagtatc gtggacgcca aattgacaga
    19381 gaaaaactgc tgcgttacct ggtctcattc cgtcatcaca acgagttcca cgaacagtgc
    19441 gtggaacgca tctttaatga cctgttacgc ttctgccagc cagaaaaatt gagcgtttac
    19501 gcacgttata cccgtcgtgg cggtctggac attaacccgt ggcgcagtaa tagcgatttt
    19561 gtcccatcga ccacaagact ggttcggcaa taaatttttt ctcaattttg cgtgctggat
    19621 tcacgcagaa ggttgtgaaa ggtcatcagg cagggctatt gtaatcaaag ggaatgacga
    19681 tattcgtccc ataaggagtt tttcttgatt acacatatta gcccgcttgg ctccatggat
    19741 atgttgtcgc agctggaagt ggatatgctt aaacgcaccg ccagcagcga cctctatcaa
    19801 ctgtttcgca actgttcact tgccgtactg aactccggta gtttgaccga taacagcaaa
    19861 gaattgctgt ctcgttttga aaatttcgat attaacgtct tgcgccgtga acgcggcgta
    19921 aagctggaac tgattaatcc cccggaagag gcttttgtcg atgggcgaat tattcgcgct
    19981 ttgcaggcca acttgttcgc ggtcctgcgt gacattctct tcgtttacgg gcaaatccat
    20041 aacaccgttc gttttcccaa cctgaatctc gacaactccg tccacatcac taacctggtc
    20101 ttttccatct tgcgtaacgc tcgcgcgctg catgtgggtg aagcgccaaa tatggtggtc
    20161 tgctggggcg gtcactcaat taacgaaaac gagtatttgt atgcccgtcg cgtcggaaac
    20221 cagctgggcc tgcgtgagct gaatatctgc accggctgtg gtccgggagc gatggaagcg
    20281 ccgatgaaag gtgctgcggt cggacacgcg cagcagcgtt acaaagacag tcgttttatt
    20341 ggtatgacag agccgtcgat tatcgccgct gaaccgccta acccgctggt caacgaattg
    20401 atcatcatgc cagatatcga aaaacgtctg gaagcgtttg tccgtatcgc tcacggtatc
    20461 attatcttcc ctggcggtgt gggtacggca gaagagttgc tgtatttgct gggaatttta
    20521 atgaacccgg ccaacaaaga tcaggtttta ccattgatcc tcaccggccc gaaagagagc
    20581 gccgactact tccgcgtact ggacgagttt gtcgtgcata cgctgggtga aaacgcgcgc
    20641 cgccattacc gcatcatcat tgatgacgcc gctgaagtcg ctcgtcagat gaaaaaatcg
    20701 atgccgctgg tgaaagaaaa tcgccgcgac acaggcgatg cctacagctt taactggtca
    20761 atgcgcattg cgccagattt gcaaatgccg tttgagccgt ctcacgagaa tatggctaat
    20821 ctgaagcttt acccggatca acccgttgaa gtgctagctg ccgacctgcg ccgtgcgttc
    20881 tccggtattg tggcgggtaa cgtaaaagaa gtcggtattc gcgccattga agagtttggt
    20941 ccttacaaaa tcaacggcga taaagagatt atgcgtcgta tggacgacct gctacagggt
    21001 tttgttgccc agcatcgtat gaagttgcca ggctcagcct acatcccttg ctacgaaatc
    21061 tgcacgtaat ctcccctccc ccggtgacgt ttgttgccgg gttttctcgt ttttggtcac
    21121 ttactcatca actcatttca tttgttatat gaatgtttct taccaccctc acgcgacaaa
    21181 tatcatcaca gttaatatgt catacaattt atgttgcaac gcaaacgttt tcctattttc
    21241 ataaaccgta ttttatcgct atgaaaaaga aattatcgcc atgattaact aaaagtattg
    21301 attttttcag ttcaacctac atatattgcg cgccctggaa gaagtcagat gtcgtttaat
    21361 gggcaaatat tgcccttaaa ttctctttta cttttgattt acagagtaaa gcgttgggat
    21421 aatctatctt ccaagtagat tattgtattt gagatcaaga tcactgatag atacataact
    21481 tgtgtgtatc tttccgccct caaattatta cggcggtaaa tgattaagcc atcgccgata
    21541 gacagatttc atttttacgg tcaggcacct tcccgggctg aactggctaa aagctgaatt
    21601 atttgcattc ctccaggaga aatagatgga aacgactcaa accagcacga ttgcgtcgaa
    21661 agactctcgt agtgcctggc gcaagacaga caccatgtgg atgctgggcc tttacggcac
    21721 ggcaatcggc gcgggcgtgc tgttcctgcc aatcaacgcc ggtgttggcg gtatgatccc
    21781 gctgatcatc atggctatcc ttgcgttccc gatgacgttt tttgctcacc gcggcctgac
    21841 tcgcttcgta ctgtctggta aaaacccggg cgaagacatc accgaggttg tagaagaaca
    21901 ctttggtatt ggcgcaggta aactgattac cctgctctac ttcttcgcta tctacccgat
    21961 cctgctggtt tatagcgtgg caatcaccaa tacagttgaa agcttcatgt ctcaccagct
    22021 gggtatgacg ccaccgccgc gtgcgattct gtcgctgatc ctgatcgtgg gtatgatgac
    22081 catcgttcgc ttcggtgagc agatgatcgt taaagcgatg agtattctgg tgttcccgtt
    22141 tgttggcgta ttgatgctgc tggctctgta cctgatcccg cagtggaacg gcgcagcact
    22201 ggaaacgctg tctctggaca ctgcatctgc aaccggaaac ggtctgtgga tgaccctgtg
    22261 gctggcaatt ccggtaatgg tgttctcgtt caaccactct ccgatcatct cttctttcgc
    22321 cgttgcgaag cgtgaagagt acggcgatat ggcagaacag aaatgctcga agatcctggc
    22381 attcgcacac atcatgatgg tgctgaccgt aatgttcttc gtcttcagct gtgtactgag
    22441 cctgactccg gcagacctgg ctgcggctaa agagcagaac atctcgattc tgtcttacct
    22501 ggctaaccac tttaacgcac cggttatcgc gtggatggct ccgattatcg cgattatcgc
    22561 tatcaccaaa tccttcctcg gccactacct gggcgcacgt gaaggcttca acggtatggt
    22621 gattaaatct ctgcgtggta aaggtaagtc tatcgaaatc aacaagctga accgtatcac
    22681 tgcgctgttc atgctggtaa cgacctggat tgttgccacc ctgaacccga gcatcctggg
    22741 tatgattgaa accctgggcg gtccaatcat cgcgatgatc ctgttcctga tgccgatgta
    22801 cgcaattcag aaagtaccgg caatgcgtaa gtacagcggt cacatcagca acgtattcgt
    22861 tgtcgtgatg ggtctgattg caatctccgc aatcttctac tctctgttca gctaagtcct
    22921 ttcgcgccgc tttcgggcgg cgcttcctcc gttttaacgc gatgtatttc ctatgattag
    22981 cgtattcgat attttcaaaa tcggcattgg cccttccagt tctcataccg ttggaccaat
    23041 gaaagcgggt aaacaattta ccgacgatct gattgcccgt aacctgctta aagacgtgac
    23101 ccgcgtggtg gttgacgtgt acggctcgct ctctctgacc ggtaaaggcc accacactga
    23161 tatcgccatt attatgggcc tggcgggtaa cctgccggat accgtggata tcgattccat
    23221 ccctggtttt attcaggatg tgaatactca tggtcgcctg atgctggcaa acggtcagca
    23281 tgaagtggag ttcccggttg atcagtgcat gaacttccac gccgacaacc tttctctgca
    23341 tgaaaacggt atgcgcatta ccgcgctggc gggcgataaa gtcgtttaca gccagactta
    23401 ctactctatt ggcggtggct ttatcgttga tgaagagcat tttggccagc aggatagcgc
    23461 accggttgaa gttccttatc cgtacagttc agcagccgat ctgcaaaaac attgtcagga
    23521 aaccgggctg tcactctctg gcctgatgat gaaaaacgag ctagcgctgc acagcaaaga
    23581 agagctggaa cagcacctgg cgaacgtatg ggaagtcatg cgtggcggta ttgagcgcgg
    23641 tatttccacc gaaggcgtgt tgcctggcaa actgcgcgtt ccacgccgtg ctgcggcact
    23701 acgccggatg ctggtcagcc aggataaaac caccactgac ccgatggcgg ttgttgactg
    23761 gatcaacatg tttgcactgg cagtgaacga agagaacgct gctggcggac gcgtggtgac
    23821 tgcgccgact aacggtgcgt gcgggattat cccggcagtg ctggcgtact acgacaagtt
    23881 tatccgcgaa gtgaacgcta actcactggc tcgttacctg ctggtagcca gtgccattgg
    23941 ttctctttat aagatgaacg cgtcaatttc tggtgctgaa gtcggctgcc agggtgaagt
    24001 tggtgtggcg tgctcaatgg cggcggctgg tctggcagaa ctgttaggtg caagcccggc
    24061 gcaggtgtgc atcgcggcgg aaatcgccat ggagcacaac ctcggtctga cgtgtgaccc
    24121 ggtcgccgga caggtccagg tgccatgcat cgagcgtaac gccattgcgg cagtaaaagc
    24181 ggtgaacgcc gcacgtatgg cgctacgccg taccagcgag ccgcgcgtct gcctcgataa
    24241 agttatcgaa accatgtacg aaacaggtaa agatatgaac gccaagtacc gcgaaacctc
    24301 tcgcggcggc ctggcaatga agatcgttgc ctgcgattaa tcgctctcca gaggcctcgt
    24361 tttgcgaggc ctcttcccga tttctcatcc agccgtagcc tgttccggca tcgaatgtta
    24421 cccttatcgc ctgatcttta agggggttat cgtggctgtt catttgctta ttgtcgatgc
    24481 actgaatctt attcgtcgca ttcatgccgt tcagggatcg ccctgtgtcg aaacctgcca
    24541 gcatgcgctc gatcagctca ttatgcacag ccagccaacc cacgcggtcg ccgtttttga
    24601 tgatgaaaac cgcagtagcg gctggcgtca tcagcgttta ccagattaca aagcgggtcg
    24661 accgccaatg ccggaagagt tgcacgacga gatgcctgca ttacgcgccg cctttgagca
    24721 acgcggcgtc ccgtgctggt caaccagcgg caacgaagcc gatgacttag ccgccacgct
    24781 ggcggtcaaa gtgacacagg ccgggcatca ggcaacgatt gtttcgacag ataaaggcta
    24841 ctgtcagtta ctttcaccga cattacgtat tcgtgattac ttccagaaac gttggctgga
    24901 tgcgccattt atcgataaag aatttggcgt tcaaccgcag cagttgcccg attactgggg
    24961 acttgcgggg atcagcagtt caaaggtacc gggtgttgcg ggaatcggac caaaaagcgc
    25021 cacgcagctg ctggtcgagt ttcagagtct ggaagggata tatgagaatc tggatgcggt
    25081 tgccgaaaag tggcgcaaaa aattagaaac ccataaagag atggcgtttc tgtgccgcga
    25141 tattgcccgc ttacaaaccg atttgcatat cgacggcaat ttacagcaat tgcggttggt
    25201 acggtaacgg cgagccggat gcaaacgatt atcaacacat tgaatttaat gcacttatat
    25261 accggataag acgcggctag cgtcgtatcc ggcattatca catcagcgca tttaccaggc
    25321 ggtatggtaa agctctacaa tatcctcaag cgttgcttca cgcgggttgc caccggtaca
    25381 aacatcatcc agtgccgcct gcgccagtgc cggaatgtct tccttgcgta caccaacatc
    25441 acgcaaatgt ggcggaatac cgacatcacg gttgagagca aacaccgctt caacagcggc
    25501 attacgcgcc tcttccagcc actttcacgc ccataacgcg cgcgatatcg cggtacttct
    25561 caccggtaaa gtcagcgtta tagcgcatga catgcggtaa caggatggcg ttcgcaacac
    25621 cgtgtggagt gttgtaaaac gcgcccagtg gatgcgccat accatgcacc aaccctaacc
    25681 caacattcga gaagcccata cccgcaacat actgcccgag cgccatttct tctccggcat
    25741 ccttatcacc agcaaccgat cctcgcagcg ccccagcaat gatttcaatc gctttaatgt
    25801 gcagtgcatc ggttagcgcc cacgcgccac gggtaatata cccctcaata gcatgagtga
    25861 gcgcatcgac acccgtcgca gctttcagcg ctggaggcat accatccatc atgtcagcgt
    25921 caataaacgc cacctgcggg atatcatgcg gatcaacgca aacaaacttg cgccgtttct
    25981 cttcgtcagt gatcacgtag ttaatggtca cttctgccgc agtacctgct gtggtaggaa
    26041 ttgccagaat cggtacactg ggtttattgg tcggggaaag cccttccagg ctacgcacat
    26101 cggcaaactc cgggttgttg ctgataatgc caatcgcttt acaagtatcc tgtggagaac
    26161 caccaccaat agcgatcagg taatccgcgc cgctattctg gaatacaccg agcccttctt
    26221 tgacgacagt aattgttggg ttgggcacta cgccgtcgta aatcgcccat gccagccctg
    26281 cagcatccat cttatcggtc actttcgcca ccacgccgca ttgcaccagc gttttatcgg
    26341 tgacgatcag cgccttctga taaccacggc gtttcacctc atcggttaaa gccccaacag
    26401 caccccgacc aaaccatgcc gtttcgttca gaatcattct gttagccatc atccttctcc
    26461 ttgttgcttt acgaaattac tcttcaatcc gtaacccata ggttttgaat ttctccagca
    26521 ctacggcaat ctcttcatcg ctcagcactg gcaccgggtc cgtaatcgcc agggtcgtca
    26581 ggtaaagttg cgccagcact tcaacttcat gcgccagcca taacgctttt tccagattca
    26641 cctcacaagc gataagccca tgatgttgta acaaagttgc cttacgattt ttgagagcca
    26701 gcgcaacatg ttcagaaagt tcgcgtgttc caaaggtcgc ataaggcgcg caaggaatag
    26761 aattaccacc tgccgccgca atcatgtagt gaatagcggg gatcggtcgg ttaagaatgg
    26821 aaactgctgt gcaatgaacg gcatgattgt gaacaaccgc gttggcatcc ggtctgcttt
    26881 gataggccgc catatggaaa cgccattcgc ttgaggggag ctttccttcc tcatgtttac
    26941 cgttaccatc aataaaggca atatgcgact ccgtcagttt ttcatatgga atgcctgtag
    27001 gcgtaatcag catcccatcc tgataacgta cactgacgtt ccccgctgtc ccctggttca
    27061 gtcccaggcg ggtcatttcc aggcaagtgt caataatctg acgagcaagt ttatttcgtt
    27121 ccattagcta cctctctctg attcaaaaca gggcaataat gttgttcctt tcacactatt
    27181 gaattagccg tttaattacc caccat
//
LOCUS       DAJVUY010000042        26815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.042, whole genome shotgun sequence.
ACCESSION   DAJVUY010000042 DAJVUY010000000
VERSION     DAJVUY010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.042"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ72_001587"
     CDS             complement(<1..326)
                     /gene="rpnB"
                     /locus_tag="OQQ72_001587"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS2011360.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLDA"
     gene            complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ72_001588"
     CDS             complement(523..1296)
                     /gene="hisP"
                     /locus_tag="OQQ72_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HCS2011361.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEAHERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1304..2020)
                     /locus_tag="OQQ72_001589"
     CDS             complement(1304..2020)
                     /locus_tag="OQQ72_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011362.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGIYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVLHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ72_001590"
     CDS             complement(2017..2703)
                     /gene="hisQ"
                     /locus_tag="OQQ72_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HCS2011363.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SGLIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ72_001591"
     CDS             complement(2793..3575)
                     /gene="hisJ"
                     /locus_tag="OQQ72_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HCS2011364.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ72_001592"
     CDS             complement(3796..4578)
                     /gene="argT"
                     /locus_tag="OQQ72_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HCS2011365.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ72_001593"
     CDS             complement(4844..5413)
                     /gene="ubiX"
                     /locus_tag="OQQ72_001593"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HCS2011366.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWKGA"
     gene            complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ72_001594"
     CDS             complement(5508..7025)
                     /gene="purF"
                     /locus_tag="OQQ72_001594"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCS2011367.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQDYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ72_001595"
     CDS             complement(7062..7550)
                     /gene="cvpA"
                     /locus_tag="OQQ72_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HCS2011368.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP
                     RA"
     gene            complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ72_001596"
     CDS             complement(7809..8471)
                     /gene="dedD"
                     /locus_tag="OQQ72_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HCS2011369.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ72_001597"
     CDS             complement(8461..9729)
                     /gene="folC"
                     /locus_tag="OQQ72_001597"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HCS2011370.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ72_001598"
     CDS             complement(9799..10713)
                     /gene="accD"
                     /locus_tag="OQQ72_001598"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCS2011371.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVEMGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10869..11528)
                     /locus_tag="OQQ72_001599"
     CDS             complement(10869..11528)
                     /locus_tag="OQQ72_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2011372.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGMLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ72_001600"
     CDS             complement(11611..12423)
                     /gene="truA"
                     /locus_tag="OQQ72_001600"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCS2011373.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAPRKDAAWTLGVNANLPDDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12423..13436)
                     /locus_tag="OQQ72_001601"
     CDS             complement(12423..13436)
                     /locus_tag="OQQ72_001601"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS2011374.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ72_001602"
     CDS             complement(13502..14638)
                     /gene="pdxB"
                     /locus_tag="OQQ72_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HCS2011375.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIAVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14737..15732
                     /gene="flk"
                     /locus_tag="OQQ72_001603"
     CDS             14737..15732
                     /gene="flk"
                     /locus_tag="OQQ72_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HCS2011376.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR"
     gene            complement(15729..16907)
                     /locus_tag="OQQ72_001604"
     CDS             complement(15729..16907)
                     /locus_tag="OQQ72_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2011377.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ72_001605"
     CDS             complement(17236..18456)
                     /gene="fabB"
                     /locus_tag="OQQ72_001605"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HCS2011378.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ72_001606"
     CDS             18615..20621
                     /gene="mnmC"
                     /locus_tag="OQQ72_001606"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS2011379.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQQDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20742..21020)
                     /locus_tag="OQQ72_001607"
     CDS             complement(20742..21020)
                     /locus_tag="OQQ72_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HCS2011380.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ72_001608"
     CDS             complement(21054..21602)
                     /gene="epmC"
                     /locus_tag="OQQ72_001608"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HCS2011381.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTPELTAEQFPWPEALN"
     gene            complement(21602..22411)
                     /locus_tag="OQQ72_001609"
     CDS             complement(21602..22411)
                     /locus_tag="OQQ72_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCS2011382.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFAGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ72_001610"
     CDS             complement(22411..23235)
                     /gene="mepA"
                     /locus_tag="OQQ72_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HCS2011383.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ72_001611"
     CDS             complement(23239..24324)
                     /gene="aroC"
                     /locus_tag="OQQ72_001611"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HCS2011384.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ72_001612"
     CDS             complement(24359..25291)
                     /gene="prmB"
                     /locus_tag="OQQ72_001612"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS2011385.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ72_001613"
     CDS             25457..26008
                     /gene="smrB"
                     /locus_tag="OQQ72_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HCS2011386.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKYILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26081..26794)
                     /locus_tag="OQQ72_001614"
     CDS             complement(26081..26794)
                     /locus_tag="OQQ72_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HCS2011387.1"
                     /translation="MATPDSVNYAIFKATFMPNSQPDLVSWTGDSSTQPSMSKISDSR
                     VSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWIVSSFVKSRDPFAKTYDD
                     DFPDYIGPTKVSSSCPAVPLAPYDVSWNENYVVHNKVVRLQSTGGVIEQTLPTFLMEN
                     GKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEPQPITSRQLHDMKLRVDT
                     TSRQPIDSTCRFTYILNMY"
BASE COUNT         6612 a         7333 c         6762 g         6108 t
ORIGIN      
        1 gcatcaagat ggttttgcat tgccgcaatg gaataacgca tcatgcgaaa agccattaat
       61 tcttccggct tactttggtg ctctatcact acataaatat aacccactcc ctcctgcgtt
      121 ttcacagacc acaagaggtc ggaataatat tgccgcaggt cttcatcaat aaaactgttt
      181 ggttccagtt taagcgtcgt taaatcacac agtttgcgca gcggcgcggg aagatgaata
      241 tcaataaaat cccgcgcggt gtctggatgg cgtaaaaaag atttaaatac cgcatcatgc
      301 ggcgtggaag ttgtcgatat tgtcatggcg ttccgtcacc cctcaaattt aagatgacgc
      361 gacaataacc acgattaaca cccaatgcag caggcagttt ttatctttgg acagcgaatt
      421 cagaagtatt tttagcggac tgcaactttt acatttcagc ggaagctgac tcgcaaattc
      481 cccatgaaaa tactccggca gcgttagcca ccggagagga aattatttca gcgatccctt
      541 aaggaactgt tgcagacgag ggctttgcgg gttgccaaat aactgctccg gcgcgccctc
      601 ttcttctatt ttcccctgat ggaggaaaat gacatgagta gaaacatggc gagcaaagcc
      661 catttcgtga gtcactacca ccatggtttt cccctcttct gccagttgct gcataatacg
      721 caacacttcg cctaccagtt caggatcgag cgccgaggta ggttcatcaa acagtaaaac
      781 ttccggttcc atcgccagcg cccgcgcgat agaaacacgc tgttgctgac cgccggaaag
      841 atgcaccgga tatttcccct gcgcacgttc gtctatcccg acttttgcca gatacttgac
      901 cgcccgctcg tgcgcttcct gcttgctcag gcccaacacc tgaatcggcg cttccatgac
      961 gttttccagc accgtcatat ggctccagag attgaagtgc tggaatacca tcgtcaggcg
     1021 tgtgcgcagt aagcgcagtt gatttttatc ggcgactttg agttgaccgt ctttgtcgcg
     1081 caccagattg atcgtctggc cattgaccac gatcgaccct tcactcggtt tttcgaggaa
     1141 gttaatgcag cgcagaaagg tacttttccc cgatcccgac gatccgatga tgcttattac
     1201 atctccggca ttcgcttgca gtgagacccc tttcagcact tcatgttcgc cgtagcgttt
     1261 gtgcaaatcg ataacgttta atttattctc ggacatcgta ttctcagtgc gttgaagaag
     1321 gtttcacatg ctgcaaccag cgtttttccg ctctgcgaaa gaggctgatc aggacataag
     1381 agatgattaa atagagcacc gcggcaatgc cgaaggcggt aaaaggttga tacgtggcgg
     1441 cgttaatatc gcgggctatt ttcagcagat ccggcacagt ggccgtaaac gccagcgcag
     1501 tagagtgcag catcaggatc acttcgttgc tgtatgccgg taacgcaata cgcagcgcag
     1561 aaggcaaaat aatgcaacga tacattttaa aagtcgagaa gccataggct ctggcggctt
     1621 caatttcccc atgcagaacc gaacggattg ccccagcaaa aatctcggta gtgtaagcgc
     1681 aggtgttaag cgtcagcgcc agcacggtac agttcaggcc actgcggaag aaagcgttaa
     1741 ggaattcggt tcccttaaca atctcaagcg tgtatatgcc ggaatagaac accagcaact
     1801 gaacatacag cggcgtaccg cgaaaaatat aggtaaataa ccagattgga aactggatgt
     1861 atttattact ggagacacga ccaatcgcca gaaacagcgc caggactccg cctatcacta
     1921 ccgacaaaat aagcagccac agagtgatcg ccacaccagt aaagcgataa ccgtcggtcc
     1981 acagcagcgg tttccagtat tcatgtaaga tttcgatcac aggtcagccc tcttcacacc
     2041 cacggagtag cggcgctcaa ggaacagcag cacaccattg gaaacagtgg tgaaaaccag
     2101 gtaaatcacg ccacagacga tggcgaaata gaacggttcc caggtacttt tgcctgccag
     2161 ttgggtggct ttgaccacat cttccaggcc gagtaacgaa accagtgcgg tagatttgag
     2221 gatcacctgc cagttgttgc caatgcctgg cagggcgtaa cgcatcatcg ccggaaacat
     2281 gatccgccga aacacttgcc cacgagtaaa accgaacgcc gtcgccgcct ctatatgtcc
     2341 tttcggcact gccataaaag caccacggaa cgtttcggta aaataagcac cgtagataaa
     2401 accgagagtg ataataccag cgaccatcgg atcgatatca atctgcccga cgcccatcgc
     2461 ctccgtcacc gtgtttagcg caatctgcaa accgaagaaa atcagcagca tcaacactaa
     2521 gtccggcacg ccacgaatca gcgtggtgta cccttcgaaa atcagccccg aaagccgatt
     2581 ttgcgagagc ttaccgccag cgccaattaa accgatgatt acagcgagca ctacagagct
     2641 gatagccagc tccagcgtga cgagcgcacc ctgtaaaata acacctgaaa acccatataa
     2701 catgctgcct gtcctgtcgt gtgtggtgaa ttaccgcctc ttgtctccct ccggttaccc
     2761 gaagggagcg ggctttcttt caccgatggc gattagccac cataaacatc aaaatcgaag
     2821 tactttttcg ctaatttctc gtaagtaccg tcagcgcgca tttcggcaaa ggctttgttc
     2881 agtgcttcgc gcagttcgtt atcttcttta cgcaggccca tgccggtccc tacgccaaac
     2941 agtttttcat ctttaacaga cgggccaccg aatttgtaat ctttaccgac aggttgtttg
     3001 aggaaacctt cgctggcagc gacctcatcc tggaacgcgg catcaatacg tccggcagtc
     3061 aggtcagaat aaatgttgtc ctgcccctga tacgagacga tttcaatgcc ttttggtgcc
     3121 caatgttcat taccgaacgt ctcctgggtg gtgccctgca atacgcctac ccgtttgcct
     3181 ttcagcgact cgactgtcgg ctgaatgtca gaatttttcg ccaccaccaa acgagaatcg
     3241 gcagcgtaca gtttgtcggt gaaggctatt tcttgctgac gtttttccgt aatggaaagc
     3301 gatgacatga tggcgtcaat cttcttcgct tttaaggacg ggattaacgc atccagcgga
     3361 ttttcgacaa acgtacattg cgtattgatg cgtttgcata attcctttgc cagatcgata
     3421 tcgaagccaa ccagttcgcc ttgtgaattt tttgattcaa atggcgcata ggtcgggtcg
     3481 gtaccgatgc ggatgttttg cggaatcgca gcaaatgccg cagttgcgct ggagaaggcc
     3541 agaaccagag agagcgatag caccagtttt ttcataatgt cctcaactga cagtcttttt
     3601 atagggaata tttacaggtt tgttacactt atcgtgccat aaaattgacc atcaaggcaa
     3661 aatatcccgc cccgttagat gtattatttt tcattaaaaa tgcttaagta tgcatttcaa
     3721 tgcaccacga tagtgcaaca aacctagcgt gcaccatgat gatcattcca tcaggtacag
     3781 cttcccagcg acgtatcagt caccgtagac attaaagtcg aaatactttt tcgccatctt
     3841 gtcgtaggtg ccgtcctgac gcagctcgcc aagcgcctta ttgaaggcag ccgtcagttc
     3901 agcatcatct ttacgtagcc ctacaccggt gccatcaccg aagtattttt tgtcttttac
     3961 tgatgagcca gcaaaggcga aatctttacc agcaggttgc ttgaggaatc cttcgctggc
     4021 agcaacttca tcttgtaacg cagcatccag acgtcctgca gccagatcgg aatagaccaa
     4081 atcctggttg gcataggcca ccacatccac gcctttgcta cgccaggtct cgttagcgta
     4141 agcttcctgg gttgatccct gcagcacacc aacatgttta cctttcagtg aatccagcgt
     4201 tggctgaatc ggtgaacctt tggcagcaat caaacgagaa tctgcggcgt acagcttgtc
     4261 ggagaaggca atctcctgct gacgtttatc ggtaatggaa agcgacgaaa taatggcgtc
     4321 gatttttttc gctttcagtg aggggatcag cgcgtcaaag tcactggcaa cccaggtaca
     4381 tttcacctgc atccgtttgc acatctcgtt accgagatcg atatcaaagc caacaaaatc
     4441 acctttagca tctttcgacg agaacggcgc ataggtggta tcggttccga tacgtaccgt
     4501 ctccggtagc gccgcatagc tggaagccgc tgcggagaga ccgactaaca aagacagagc
     4561 gagaatcgac ttcttcatac ataaccctca agtgaaaatg gcttttttat gttgtgtatt
     4621 gtgttgtgtg tttgcaggct ctttcaagca ggtcttatgc catcttgacg acaacagtaa
     4681 cattcaacgt taaatatgtt aataagacgt tgcattattg tcctgaagtt gaagatagca
     4741 ggtatagcgg ttgaatcgca gcgtttcgat tgaatggcag aaacaaaatg tcgaggattt
     4801 gatcgcggtt gcaaaattgc cctgaaacag ggcaacagcg gagttatgcg cccttccagc
     4861 gggcaaagag atcttcagga agggttattg caaactggtc aagaacacga ttaaccgtct
     4921 gatttatcac atcatcaagg gattgcgggc gatgataaaa cgccggaaca ggaggcataa
     4981 tcaccgcacc gatttctgcc gcctgagtca ttaaacgcag atggcctaag tgcaatggtg
     5041 tttcacgcac gcagagcacc aacgggcgac gctctttcag caccacatct gccgcacggg
     5101 tcagtaagcc atcagtatag ctatggacaa tgccggaaag ggttttgatt gaacagggta
     5161 aaatcaccat ccccagcgtc tggaaagaac cggaagagat gctggcggaa atatcgcgcg
     5221 catcgtgcgt gacatcagct aatgcctgca cttcgcgcag ggaaaaatcc gtttcgaggg
     5281 ataaggtctg gcgcgccgcc tggctcatca ccagatgcgt ttcgatatct gtgacatcgc
     5341 gcagaacctg taataagcgc acgccataaa tcgcgccgct ggcaccgctg atgcctacaa
     5401 tgagtcgttt cataaatagt tgccctgtca gacttgcagg cagactttgc agtatttcgg
     5461 cgggagttgc aagtcagggt gccagaccgg caccctcagc gaaggcatca tccttcgtta
     5521 tgcatttcga gattttccac ttcgttctga cgttgcactg ctttggcgtc atcattacgt
     5581 aacgtatcga ggaaatcgag gtagtcctga tcaacatctt tggtgacgta gacgccgttg
     5641 aacaccgagc attcaaactg ctggatatcc ggattttcag cgcgaacggc gtcgatcaga
     5701 tcgttcagat cctggaaaat caacccgtca gcaccgatga tctggcgaat ttcatcaact
     5761 tcgcgaccgt gagcgatcag ttccgtggcg ctcggcatat caataccata aacgttcggg
     5821 aagcgaattt ccggggccgc agaagcgagg tacactttct tcgctccggc ttcgcgtgcc
     5881 atctcgataa tctgctcaga agtggtgcca cggacgatgg agtcgtcgac cagcaggacg
     5941 tttttatcgc ggaactcggc gcggttggcg ttcagtttac ggcgcacgga cttacgacgc
     6001 agctgctggc ccggcatgat gaaggtgcgg ccaacatagc ggtttttaac gaagccctgg
     6061 cggtacggct tgcccagaat acgagcaatt tccagcgcga tatcacacga ggtttccggg
     6121 atcgggatca ccacgtcgat atccagatct tcccattcgc gggcaatttt ctcacccagt
     6181 ttcgtgccca tattcacacg cgcgctgtaa acggaaattt tgtcgataaa cgagtccggg
     6241 cgggcaaagt atacatactc aaacaggcac ggattgctga ccggattgtc agcacattga
     6301 cgggtaaaca actgcccttc ttcagtgatg taaatcgctt cgcccggcgc gacgtcacgc
     6361 aggaaatcaa agcccagcgt atcgagcgct acgctttcgg aagcgaccat atattctgta
     6421 cggttctcgt caatatcacg ttttcccagt accagcggac gaatcccgtt tggatcgcgg
     6481 aaagcaacca taccgtggcc gataatcatc gccacacagg catatgcgcc gcggattaag
     6541 cggtttgtgg cagcaatggc agcgaaaata ttgtcggctt ccagcgggta gtggcggaag
     6601 ttgtccagct cgctagcgaa gatattaagc agaatttccg agtcggaagt ggtgttgatg
     6661 tggcggcgtt tttcttcaaa cagtttttta cgcaactcgt gagcgttggt cagattgccg
     6721 ttgtgggcaa gcgtaatgcc atacggggag ttaacgtaaa acggctgcgc ttcagaggcg
     6781 ctggagctgc cagccgtagg gtaacgcaca tgaccaatgc ccatattgcc ctgcaaacgc
     6841 tgcatatggc gagcttcaaa tacatcgctc accagcccgt tcgctttacg caaacggaag
     6901 cagttattgg catctatggt gatgatgccg gcggcatcct gaccgcgatg ctgaagcacc
     6961 gttaaggcat cataaatcga ctggttaacc ggcataacac cggcgatacc gacaataccg
     7021 cacatacgtc tttttcctcg ttaagccaca tctcagagca cttacgctct gggcaagaaa
     7081 cttgacgagc tttgcagata atcaaaaaac catctgatga taaaactgaa ctgcgggatc
     7141 agctgtgatt tgctccagtc ttcgcttttc gacaccccgg taaaggagtc gagaaagaag
     7201 agaatggcgg caacaatcaa cacaccgcgc aacgcaccga aacagacgcc cagcacccga
     7261 tcggtgcctg acaaccccgt tttctccacc aactggccta tcacgaagtt cacgatagca
     7321 ccaacgatca gggtagcgat aaacagtacc gcgatggcaa ttccatttcg aaccagttcg
     7381 tcttcaaagc ccgtaaacca gactgacagg taagtgtagt aatgactggc aacaaagaaa
     7441 gcacaacccc atgtcaccag cgataacgct tcacgaacaa agccgcggat caggctaacc
     7501 agagaggaaa aagcaatcac cgcgattatg gcgtaatcaa tccagaccat atgtgtccca
     7561 cgattttacg ccctgtcatc ctgttcgggg cgcattctaa cagaaaaaga aaacgtttgc
     7621 gtagggattt ccttcccacg catcaataaa aatggcgctg aaaaaatatt caacgccatc
     7681 gactttttat gcctttgcgg catcgtgcaa tgcgtgtcgg atgcggcgta aacgccttat
     7741 ccgacctacg gttctaacac tgcccaagcc tgataagacg cgccagcgtc gcatcaggca
     7801 agactgtatt aattcggcgt atagcccatt accacgccac ttaagccaga aagttgcttc
     7861 aactcaccca gcgaaccttt cagcttatct ttcgaggcat ccggcccaac cagaatacgg
     7921 gtaattttac cctgcactgg cgtggatggc gacgtataaa cccgataacc ggcaccgcgc
     7981 agcttaccga caatctcatt cactttatcg gcatttttca gcgcacccag ttgcacaaca
     8041 taggctttac ccgttggcgc tgctttttct tccacgaccg gcttcggttc tggcttcggc
     8101 gcaggtggtg cttcaacctt cggtttaggc ggctccaccg gtttcggctt cggtggggcg
     8161 accggtgcag gttccggttc aaactcggtg ttattggctg caatagtggc cggatcgagc
     8221 gacggtgctg cggcatcacc tgcccgcacc tcttccgctg cgccttccgg cggctgcgtc
     8281 ggcaacgcct gggtggcggc tggcatcata tcaggctcat cgcgatcgcc cgcttttgga
     8341 accagcggga tagccgcaaa ctcatcctga taatgttttt tctgcccgtc cagcagccct
     8401 ggaagtacaa tcacccccag cgccaccagc acgatcgtgc ccactaaccg attctgaaac
     8461 ttacttgcca ccgcttctcc tcgcgtcaat cacttccatg acatgtgcga ccgtgtggaa
     8521 agaaccacac accagcacgg tgtcttccgc tttagcgtcc gccattgcgg catcccatgc
     8581 ctgcgcaacg ctatcaaatg atttgccgtt acccaaatgc tcaagcagtt gttctgccgt
     8641 ggcaccgcgc ggcccttcca gtggcgcaca ataccagtca tcaaccacgc ttttcaacca
     8701 ggccagagtt ccggcaatat ctttatcatg tagcataccg ataaccgcca gcacgcgccc
     8761 gtttttcggt agcgctttca tacgcccggt gagatattcc gccgcatgtg gattatgcgc
     8821 gacatcaaaa ataacgcgtg gcgactcgct cacaatctgg aaacgtcccg gcaaaattgc
     8881 gctggcaatc ccgtcgcgaa tggcattttc actgacttcc agcccgctgg cacgcagtgc
     8941 cgccagcgct gttgcggcat tcggttgcgg gacaagcggc aacggcagat tttccagcgt
     9001 gccgtgagca tcgctaaacg cccagtcatg atcggtgacg gaatagttcc actcaacgcc
     9061 ccgacgttgt aacagtgcac ctttttcctg cgccacatca gcaatggtag aaggcatttc
     9121 cggctcaccg acaattgccg gttttgcgct gcgaaagatg cctgctttct cgcgaccaat
     9181 actttcgcga tctggcccca gccagtcggt atgatccagc gcaatactgg ttactaccgc
     9241 gacatcggca tcgacaatat tggttgcgtc cagacgaccg cccagcccta cttccagaat
     9301 caccacgtca agttgtgcct gtttgaacag ccacaacgcc gacagcgtac cgtactcgaa
     9361 ataggtcagg gaaatatcac cgcgtgccga ttcaatctcc gcaaaagagg cggtgtgggc
     9421 cgattccggc aattcctgac cctgcacacg tacgcgctcg gtataacgca ccagatgcgg
     9481 cgaactgtag acgcccactt tgtaccctgc cgccatcaga atcgactcca gcgtacggca
     9541 ggtggtgcct ttgccattcg tacccgcaac ggtaaacaca aatggcgctg gtttcagaac
     9601 gccaagacga gccgcgacct ggctcacgcg ctcaaggccg agatcgatag ttttactgtg
     9661 caggttttcc agataagaaa gccacgaagc cagaggcgac gcggcttgag gagtgcgttt
     9721 gataatcatg gtatccgctg attcgttacg gtgagaatag caaaagggca gagccagtgg
     9781 ccctgccctt atcagttatc aggcctcagg ttcctgatcc ggtaccgggg gtaccactac
     9841 gccttcacgc ggcgcttcag gattcggcgc tggcagattc atcaacttcg ccagaatgct
     9901 cgccagtttc aggcgcattt ccggacgacg gacgatcatg tcgatcgcgc ctttctcgat
     9961 caggaattca ctgcgctgga atcctagcgg cagtttttcg cgaacggtct gttcgataac
    10021 acgcggaccg gcaaagccaa ttaacgcttt cggttcagcg atgttgagat cgcccagcat
    10081 ggcgaaactt gcagaaacac cgcccatcgt cgggtcggtc agcacggaga tgtacggcaa
    10141 gccgcgctcc tgcatttttg ccagtgccgc agaggttttc gccatctgca tcagcgacat
    10201 cagtgcttcc tgcatacgtg cgccaccaga ggcggagaag cagatcagcg ggcagttatc
    10261 ttccagcgcc tgctcaacgg cacgcacgaa acgtgcaccc acaacagacc ccattgaacc
    10321 gcccataaag gcgaactcga atgccgcagc gacaaccggc attccataca gagtgccttt
    10381 catcaccacc agcgcatctt tttcgccggt ttctttctgc gcagaagcca gacggtcttt
    10441 atacttcttg gagtcacgaa acttcagcac atctttcggc tcaagctcgc tacccatctc
    10501 cacaaggctt ccttcatcta acaggctatg caggcgatta cgcgctgtca tacgcatgtg
    10561 atggtcacac ttcggacaga cctcaagatt acgttccagc tcagcgcggt ataaaacctg
    10621 accgcagcta tcacacttag tccacacccc ttcaggaatg ctcgccttgc gggtgggagt
    10681 aatgttgctt ttaattcgtt caatccagct cattagggac ctttctgtct gaacctggtt
    10741 cgatgccagt tttatctttg gggacgcata atgccatttt tgcccccaac agaccatgaa
    10801 tgttgcacat taaaacataa cagcccgaaa ctttggataa aaaagtggtc gaaccgcgga
    10861 gttacttttt attttgcggc gcgtgccgca gcgcgtttgt gacgaataaa ttcgaaaacc
    10921 ccaggcaata ttgaaacaaa aataatgcca acaatcatca gcttaaggtt gctctgaatg
    10981 aaggggagca tgccgaagaa ataacccgcg taggtaaaaa tcagtaccca caacagtgcg
    11041 ccgatcacgt tataagcggc gaaatgacgg tacgacatgt ggcccattcc cgcaacaaac
    11101 ggcgcgaacg ttctgacgat cggtacaaaa cgggcgagaa taatcgtttt gccgccatgt
    11161 ctctcgtaaa actgatgagt cttatcaaga taactgcaac gaaagatttt cgaatccggg
    11221 ttactgaaca gtttgtcacc aaataaccgt ccaatggtat agttcactgc atcaccgaca
    11281 atagcggcaa tcaacataag caccaccatc atatggacat tgagatcgtt agtttccagc
    11341 gacgccaatg caccagcaac aaacagcagc gaatcaccag gcaggaatgg cgttaccacc
    11401 agccccgttt cgcagaacag aatcaaaaac agaatggcat aaacccagac gccgtactcc
    11461 gcgaccagct ctgccagatg cacgtcaatg tgcaggataa aatcgatgag gaaataaatc
    11521 aggtccatat ttgcctatgc cttgtactcg tcatctttca ggctgtaact acgttggcta
    11581 cagcctgaaa tgttccgagc attattctcg ttagtccgcc agaaatagcg ggcccattgg
    11641 cggttttgga agatcatacc ggtcagggta atccaccgcg accagataca gcccttccgc
    11701 ttttgccgtt gctgccgcca gcgttctgtc ctttgccgcc agcaactctg ctatccagct
    11761 ctccggctgg ttgtgggcac cgacttccat caggctgccg acaatattcc tgaccatatg
    11821 atgtacaaag gcattcgctt tgatatctac caccacataa ggaccgtgac gcgtgacatt
    11881 aatatgcata acgttgcgcc acggggttcg ggactggcac tgcaccgcac ggaacgaggt
    11941 gaaatcattc tcgcccagca agcattgcgc agcccgatgc atccgttcag cgtccagcgg
    12001 ttcgtaaaaa tgggttaccc ctttactcag taccgccggg cgcagccgat gattgtagat
    12061 gatgtagcga taacggcgag ccgtggcgct aaatcgggca tgaaaatcat caggtacagc
    12121 tttaacccaa cgcacggcga tgtcatcagg taaattcgca tttacgccca aggtccacgc
    12181 cgcgtctttg cgcggcgcgg ttgtttcgaa atgcaccacc tgcccggtac cgtgtacccc
    12241 tgcgtcagta cgcccggcgc agaagacggt gatgggttcg ttcgccacct gggagagcgc
    12301 cttttccagc ttctcctgca cactgcggac ttcattctgc cgttgccagc cgtaatactt
    12361 actgccgtcg tactcaatgc ccagcgcaat tttataaact ggcagttgtt gctggtcgga
    12421 cattagtaca gatactcctg caccagtttc tcggcgattt ttactgccat cagcgcgccg
    12481 ccaaagcgaa cgttatcggc caccgaccag aactggactt gctccggcat accgtagtca
    12541 ttacgcacgc agccaacaga aagatgcgga gtacccgaag catcccctac ctgagtcggg
    12601 aattcgttct cttcagagag cacaatatct tcgccctgag caaacgcatc acgcgcttct
    12661 tctgccgcca gcggacgcag tgcttcaaag ttgaccatct gggcatgacc gtagaatacc
    12721 ggtgcctgga cgacgcttgc cgaaatcatc agcccttcgt cctgcaggat tttgcgtact
    12781 tcgtcaacga tacgacgttc ttcacgcacg ctaccttcgc tatccggcaa caacggcagc
    12841 atattgaacg ccagttgacg accgaagaaa tcttcttcgt caatcggaat gccgttgagc
    12901 aatttcgcac tctgccccgc taacgcatcg accgcttttt tgccctgggc ggaggctgaa
    12961 atcaggctgg taacactgat acgcgacaaa ccgccctgat cgattaacgg tttcagtgcc
    13021 gccagcagct ggctggtcag actgtctggt acggcgatga cattccggtt gcggtaatcg
    13081 gtcagtacaa acgggtttac ttccggcacc accagcggta cgtcgggttc gagagcaaac
    13141 agtccgctgc tgtcgatcac caggcaacct gagttggtcg cttcttcaac ccaggcagcg
    13201 gtagcttctt tgcctgcgac aaaaaatgcc agctgcgcct gcgtccagtc gaattcagcg
    13261 gcatcctgca cggtgattgt tttaccacca aagcgcagtt gttcgcctgc gctttcgtta
    13321 cgtgccagtg cataaatttc cccaaccggg aactgacgtt cagccagcgt ttcaagcagg
    13381 gcttcgccca cagcgccagt tgcgcccagg acggcaatgt tccagccttc agacatggtg
    13441 gtttactcca gaaatagcaa agctccctgc caatgttaca gcagagagca tgaagaagag
    13501 attaacgtgc cggatgatga acggcgttaa aacccagttt acacagcaat gatgccgcac
    13561 tggcgtcatc acaaattaca tacagagatg accattcacg gcgctcaaga tagtttttgc
    13621 gcagtttatc gaactcaccc ggtatcccgg cgactttacg cagcggtgcg tcatcgcggc
    13681 gcacatcata caccaaatgc accagccttt tcagcgtcgg ttgatcgagc gggccatgca
    13741 gcgtaatgcg accaaactct ggcgcgggca gtaatgtatc cagcgcaacg tgctgttcat
    13801 gcccaataaa cttgctataa gcttcaaaca cttgcgtagt accgcgtgct ttaccttcca
    13861 gggtataacc tgcgatatgc ggcgtgccga tatccacttt tgtcagcaac tccacgttaa
    13921 gttccggttc gccttcccag acatccagca ctacgcttaa cttctggcct tcattcaggc
    13981 aggtcagcaa cgcagtatta tcgacgactg cgccacggca ggcgttaatc agaatcgctc
    14041 ccggcttcag gctacggatc agtttttcat ccgccagatg cagcgttttg tacggcccat
    14101 ctttgaagag tggcgtatgg aaagtcagaa tatccgcatg ctgaactaat tcatccagcg
    14161 agcggaaatc accctcatcc ccacggtcag cgcgaggcgg atcgcaaagc aatgttttaa
    14221 tccctaacgc ttccagtcgc gcctgcaatc gacgtccaac gttaccaacg cccacgatcc
    14281 ccaccgtacg gtcgtgcagt gaaaatccat cgcgttcggc aagcatcagt agtgaggaga
    14341 aaacatattc caccaccgca atcgcattac agccaggtgc agcggaaaaa ccaattcccg
    14401 cctgcttcaa ccatgcttca tcgacatggt cggtccccgc agtggcagtg ccaacaaatt
    14461 taatgggttt tcctgccagc aaagattcat tcactttcgt gaccgaacgc accatcagcg
    14521 catccgcgtc tgccagttga gcgacggcga ttggacgccc gggaaccgcg gtcacctcac
    14581 ccaaacggct aaataagtcg cgggcataag gcatattttc atcaacaagg attttcacgt
    14641 ttgtgttacc tgtatgagac gagagttaac cggacaagtg tgccataatc tcgcggccag
    14701 gcatacttgc gaagatttca ggtataagga tacgtaatga tacaacctat ttccggccct
    14761 cctcctgggc aaccaccagg tcagggagat aacctgccgt ctggcgcggg caatcagcct
    14821 ttatccagtc agcaacgtac ttcgctggaa agcttaatga cgaaagtgac ctcactgacg
    14881 caacagcaaa gagcagaact gtgggcgggt atcaggcacg atattggtct gtcgggagat
    14941 tcaccgctgc tttcgcgtca cttccctgcc gctgagcata atctggcgca acgtctgctg
    15001 gccgcgcaaa aaagccattc tgcccgccag cttttagcgc aattagggga gtatttacgt
    15061 ctggggaata atcgtcaggc ggtcacggat tatatccgtc ataactttgg tcagacgccg
    15121 ctgaatcagc tctcaccgga gcaattaaaa accattctca ccctgttgca ggaagggaag
    15181 atggttattc cgcaaccgca gcagcgcgag gcgaccgacc gtcctttatt accggcggag
    15241 cacaatgcgc taaaacagct ggtgaccaaa cttgcggcgg caacggggga acccagcaaa
    15301 cagatctggc aatcgatgct ggaactttcc ggggtgaaag atggcgagtt aattccagcg
    15361 aaactgttta accatctggt gacctggcta caggcgcgtc agacgctaag ccagcaaaat
    15421 acgccgacgc tggaatcact acagatggcg ctaaaacaac ctttagatgc cagtgaactg
    15481 gcggcgttat cggcatatat ccagcaaaaa tatggccttt ctgcgcaatc atcgctttct
    15541 tctgcccagg ccgaggatat tcttaatcag ctttatcaac ggcgggttaa agggattgat
    15601 ccgcgtgata tgcaaccgct gcttaatcct tttccaccga tgatggacac gttgcaaaat
    15661 atggcaacgc gtcccgcgct gtggatactg ttagtcgcga ttatcctgat gctggtctgg
    15721 ctggttcgtt aaccccgacg aaatgacagt atcgtgacaa taatacccag caccgcagag
    15781 atcgccccgg caagaaatac cgaagagtaa ccaaacgtgg tcgccagcat tcccgccagc
    15841 ggcccggaga cgccgagggc gatatcctga aacgcggcgt aaccgcccag tgcggtgccg
    15901 cgaacttgtg aggggacgcg tttaaccacc tccacgccca gcgcaggaaa gataagcgaa
    15961 catccggctc cggttaacgc cgcgcccgct aatgcgaccc atgcacctgg ggcttgccag
    16021 agcagcaaca agcccaccgt ttctacaagc agagagacaa tcgccacttt cacgccgcca
    16081 aaacggtccg gcatccagcc aaacatgacg cgcatcacga caaatgcgcc gccaaacgcg
    16141 gtaagagtaa agcccgccat cgcccatcct ttgctggcaa agtagagcga aacgaaagtc
    16201 ccgataaccg caaaaccaac gccttgtagt gccagcccta accctggttt ccagataagc
    16261 ccgacaacgc tccacagcga tggacgttct cccgccaggg ccggtacttt gcgcactgtg
    16321 ccgttacagg cccacgccag taagggtaat accattgtgg tgatcgccag tgcggcaaaa
    16381 ccgtaatggc tatgaatcaa caggccaagc ggcgcaccaa cagcgagggc accgtaaatc
    16441 gccattccgt tccatgacat cactttgcca gagtgttttg cccctacgat gcctaatccc
    16501 caggtcagag cgcctgtcag taactggctt tcaccaaagc caagaatcaa acgcccgacg
    16561 accaacaggg caaatttcaa cggtgcggag acaggcaaaa tcgccgccag cagcaacgcg
    16621 ccgccagcca gaccacaagc taacatcccc tgaagcgccg aacgttttgc accatattga
    16681 tcggccagtc gcccggcata gccacgcgtc agcaccgtag ccagaaactg aatcccgacg
    16741 gcaatcccga ccatggtatt gccatagccc agatcatgat gaacaaacag cgggataacc
    16801 ggcaacggca gccctacggt catgtaggtg agaaaaaccg caaaagcgat gcggaagagc
    16861 gaaaaattgg cagaagatcg tgtttcggtt tggcttacag cagtcatgca ttactccaga
    16921 atgcagcgca aggcgaggag tatccccgtc tcatctctct ggtttcaggg ttacagtgcg
    16981 ttggcaggat ttaacgcgta cgtcttttca gaaggaaatc gacaaagcgg gaagtttgcc
    17041 tggaactggc ggcgattgtc aatgatgtga aaaagggaac catcaggttc ccttttgcgt
    17101 tagtgccgga ggccgcattg gcgcgtaacg tcggatgcga cgctggcgcg tcttatccga
    17161 cctactccga ctactccgac tactccgact actccgacta ctccgactac tccgactact
    17221 ccgacctact gcgaattaat ctttcagctt gcgcattacc agcgtggcgt tggtgccgcc
    17281 gaagccgaag ctgttagaca taacggtggt cagttcgcga tcggtcgttt cggtcacgat
    17341 gttcagacct gccgcctgct cgtccagctc ttcaatgttg atgctcgggg cgataaagcc
    17401 gtgttccagc atcagcagag agtagatagc ttcctgtacg ccagcagcgc ccagagagtg
    17461 accggtcatg gctttggttg cagaaatcgc cgggctctta tcgccgaaca cttcacggat
    17521 agctgccagt tctttcacgt cgccaaccgg agtcgaagta ccatgagagt tcaggtaatc
    17581 gattggggta tcaacgccgt gcatcgccat cttcatgcag cgtactgcgc cttcgccaga
    17641 cggagcaacc atgtctgcac catcagaggt tgcgccgtag ccaacgattt cagcatagat
    17701 gtgagcacca cgcgccagcg cgtgttccag ctcttcaacc actaccatac cgccgccgcc
    17761 agcgataacg aaaccgtcac ggtgagcgtc gtaagtacgg gaggcttttt ccggggtgtc
    17821 gttgtattta gtagacagcg cacccatcgc gtcgaattcg caggccattt cccagcacag
    17881 ctcttcgccg ccgccagcaa acacgatgtc ctgtttgccc agttggatct gctctactgc
    17941 gttaccgata cagtgtgcgg aagtcgcaca cgcggagctg atggagtagt taacgccatg
    18001 aattttaaac ggcgtggcga ggcaggcaga aacgccggat gccatcgctt tggtgaccac
    18061 atacgggcca accgctttca ggccgcgcgg gccgcgcatt gcgtcagcgc cgaatacctg
    18121 gaaacgcggg gaaccgccgc cagaacctgc aatcaggcca acgcgcgggt tattctggta
    18181 agcttccgga gaaaggcccg catctgcgat tgcctgctcc atagaaagga atgcataaat
    18241 ggatgcgtcg ctcataaagc gcacaacttt gcggtcaatg aggccagtgg tatccagttt
    18301 tacgttgccc cagacgtggc tacgcatgcc ggaatcctta agctcctgag agaaagtgat
    18361 ccctgaacgt ccttcacgca gagatgccag gacttcctgc tggttattac cgatgctgga
    18421 aacaatgccc aggccagtaa tcactgcacg tttcattcaa tacctctgta agtcgcacat
    18481 agagtaagtt tcgaatgcac aatagcgtac acttgtacgc cgaacaagtc cgatcagcca
    18541 tttaatagag aaatttgcgc agccttacac acatcgctaa gatcgagcca ccgcctgtaa
    18601 gacgagtaac ttacgtgaaa cactactcca tacaacctgc caacctcgaa tttaatgctg
    18661 agggtacacc tgtttcccga gattttgacg atgtctattt ttccaacgat aacgggctgg
    18721 aagagacgcg ttatgttttt ctgggaggca accaattaga ggtacgcttt cctgagcatc
    18781 cacatcctct gtttgtggta gcagagagcg gcttcggcac cggattaaac ttcctgacgc
    18841 tatggcaggc atttgatcag tttcgcgaag cgcatccgca agcgcaatta caacgcttac
    18901 atttcattag ttttgagaaa tttcccctca cccgtgcgga tttagcctta gcgcatcaac
    18961 actggccgga actggctccg tgggcagaac aacttcaggc gcagtggcca atgcccttgc
    19021 ccggttgcca tcgtttattg ctcgatgaag gccgcgtgac gctggattta tggtttggcg
    19081 atattaacga actgaccagc caacaggacg attcgctaaa tcaaaaagta gatgcctggt
    19141 ttctggacgg ctttgcgcca gcgaaaaacc cggatatgtg gacgcaaaat ctgtttaacg
    19201 ccatggcaag gttggcgcgt ccgggcggca cgctggcgac atttacgtct gccggttttg
    19261 tccgccgcgg tttgcaggac gccggattca cgatgcaaaa acgtaagggc tttgggcgca
    19321 aacgggaaat gctttgcggg gtgatggaac agacattacc gctcccctgc tccgcgccgt
    19381 ggtttaaccg cacgggcagc agcaaacggg aagcggcgat tatcggcggt ggtattgcct
    19441 gcgcgttgtt gtcgctggcg ctattacggc gcggctggca ggtaacgctt tattgcgcgg
    19501 atgaggcccc cgcactgggt gcttccggca atcgccaggg ggcgctgtat ccgttattaa
    19561 gcaaacacga tgaggcgcta aaccgctttt tctctaatgc gtttactttt gctcgtcggt
    19621 tttacgacca attacccgtt aaatttgatc atgactggtg cggcgtcacg cagttaggct
    19681 gggatgagaa aagccagcat aaaatcgcac agatgttgtc aatggattta cccgcagaac
    19741 tggctgtagc cgttgaggca aatgcggttg aacaaattac gggcgttgcg acaaattgca
    19801 gcggcattac ttatccgcaa ggtggttggc tgtgcccagc agaactgacc cgtaatgtgc
    19861 tggaactggc gcaacagcag ggtttgcaga tttattatca atatcagtta cagaatttat
    19921 cccgtaagga tgactgttgg ttgttgaatt ttgcaggaga tcagcaagca acacacagcg
    19981 tagtggtact ggcgaacggg catcaaatca gccgattcag ccaaacgtcg actctcccgg
    20041 tgtattcggt tgccgggcag gtcagccata ttccgacaac gccggaattg gcagagctga
    20101 agcaggtgct gtgctatgac ggttatctca cgccacaaaa tccggcgaat caacatcatt
    20161 gtattggtgc cagttatcat cgcggcagcg aagatacggc gtacagtgag gacgatcagc
    20221 agcagaatcg ccagcggttg attgattgtt tcccgcaggc acagtgggca aaagaggttg
    20281 atgtcagtga taaagaggcg cgctgcggtg tgcgttgtgc cacccgcgat catctgccaa
    20341 tggtaggcaa tgttcccgat tatgaggcaa cactcgtgga atatgcgtcg ttggcggagc
    20401 agaaagatga ggcggtaagc gcgccggttt ttgacgatct ctttatgttt gcggctttag
    20461 gttctcgcgg tttgtgttct gccccgctgt gtgccgagat tctggcggcg cagatgagcg
    20521 acgaaccgat tccgatggat gccagtacgc tggcggcgtt aaacccgaat cggttatggg
    20581 tgcggaaatt gttgaagggt aaagcggtta aggcggggta atctgctctc gcagtgtttg
    20641 ccggatgcgg cgtgaacgcc ttatccgacc tacgtgtgac gtgtaggcct gataagacgc
    20701 gataagcgtc gcatcaggca tggtgctcca gacgccgcaa cttactgctg tgacgcctgc
    20761 tgaaacaggt tttcccacat atcggtcacc agcgcctggt cacgcggcga caattcaccg
    20821 gcaccaatgg ctttttccag actctggcta acggtcgtat gcaccgcctg agcggagtgg
    20881 tcatcaccac tttccagttc tgcgatggct aatgtcaggt ggccacgcaa atacccactg
    20941 gcaaacaact catcatcact ggcatggtca atcatgccgt cgattaatgc cagaatgcgt
    21001 gattcaaact ccgcgatcat cttctttcct cattgtaaaa cgtggcaccg gcttcagttg
    21061 agcgcttccg gccacgggaa ctgttccgcc gtaagttccg gcgtgtgata ataattttgt
    21121 agtgctttaa tgaagcgtgc cggacgctcg ggaatgccat ttgtcagata atccatcacc
    21181 tgcgcatgta cccgccgttg aaacaccaca cgatccggtt cgaagtcgcc ttccagattg
    21241 tcgcaactga cgttaaacgg atatcccgcc gccacacaga acaaccagtc gagtgcctgc
    21301 ggcttcactt caacatcttc aaactggctt tgcgtttggg catcacgccc atccgggcaa
    21361 taccagtagc cgaaatcaac cagctcacgg cgcgcttttc cggcaataca ccagtgcgaa
    21421 atctcatgaa ttgcgctggc ataaaagccg tgggcaaaga caattcggtt atacggtact
    21481 tccgcatcag caggaagata gatcggttcg tcgtcgcctt taatcagacg ggtattaaat
    21541 tcatcggcaa agcagctatt aaaaatttca atcaactgct catagtggtg tgtactgttc
    21601 attagttcat ccccaaccag tggaggatct cctgtccgtg gctatcgtaa agtaatttgg
    21661 cactcatcac cgccgagacg ataacgatca tcgggcggat cagtttttgt cctttgctca
    21721 gcaccagtct tgaacccatg cgcgcgccga ggaactgccc caccagcatg acaaagcccg
    21781 tcgcccaaat cactttgccg ccgagaataa acagcagcag accgccaatg tttgacgttg
    21841 cgttgagtaa tttggcgtga gccgtggctt tggcgaggtt gaatccgcac agcgtaacga
    21901 aggccagcgc gtaaaacgat ccggcagccg ggccaaagaa tccgtcataa aaaccgacgc
    21961 agccaccggc aattaacgcg aagggtaaac cgtacatccg gcgctggcga tcttcttcac
    22021 ccagctttgg catcagcaag aaatagaggc cgatacaaat taccagaatg ggcaaaatct
    22081 gccgtaagac atcagcctga acgtattgca ccagcagtgc gccgctcatt gagccggcaa
    22141 aggtcatggc gatattgagt ttctgatcgc ttaaactaac cactttgcgg cgaataaagt
    22201 agatagtggc ggaaatagag ccgccgcagg cttgcagttt attggttgcc agcgcgttag
    22261 cgggagacat tcccgcagcc atcaatgccg gaatggtgag taacccaccg ccaccggcaa
    22321 tcgagtcgat aaatcccgcc agcatggcga caaaaaagag aactcccagc aacagcgggg
    22381 aaaccataaa caggctatta aacgtttcca ttagatcacg tgctcatcca gtagcgcctg
    22441 gcaggaaggc ggcaacggag gcggtgtctt cttctcaggc tttgttgttc ctggttttgg
    22501 aggtgcaaac cagctttgca gttctgcccc gcaaccatcg cctggtggcg gtaaaggttg
    22561 atcttcacac tccagactat cggcagggca acgtaatcgt acatgcatat gcgcgcgatg
    22621 ctggaaccag ggtcgcactt tgcgcaacca gtcgcgatcg gtgcccgcat caaggcaaag
    22681 ttgttgttta atcgccggat taacaaaaat gcgcgtgacg tctttgtcct gggcggcgag
    22741 tttgatcaag ctgaaaattt ctggcttcca cagcgtggag acaacgtgtt taccgtcgcg
    22801 ggaaactaag tccagtgctt gcgggcgcaa gagctgcgcg gaggtccagc gagttttcgg
    22861 cagttgcaga aagatatcga catccagtcc ggtctggtgg ctggcatgac cgccgttgaa
    22921 acgcccacca gcgggcatcc ccatatcgcc aatcagcacc gtacccatgc ccagattgct
    22981 cacctggcta ctcagacgct ggataaacat caccagatcc gggtgaccga aatagcgacg
    23041 ctgatcggta cgcatgacct gataatgttc ggactgtatc ggcaacgtgt cagcgccgac
    23101 aatacagcca ttagaaaaac tgcctatcga ttgtgcgcta cccggcacag gttgggttat
    23161 tttttgccac ggcgtcgctg ccaagctagc gctactggca agcagagcca gcagcgcaat
    23221 cgcggttttg ttcatttttt accagcgtgg aatatcagtc ttcacatcgg cattttgcgc
    23281 ccgctgccgt aacaggtgat ccattaaaac gatcgccagc atcgcttcag cgatcggcac
    23341 tgcacggatc ccgacacagg gatcgtgacg acctttggtg atcatctcaa cttcttcgcc
    23401 aaagcggtta atagtgcgcc ccggcacggt aatgctggag gtcggtttca gcgccatatg
    23461 agcaatgatt tgctgcccgc tgctgatacc gccgagaatg ccgcccgcat ggttgctctg
    23521 gaaaccgtct ttggtgattt cgtcgcggtt ctggctgccg cgcagcgcca ctacgtcaaa
    23581 gccgtcgcca atttccacgc ctttcaccgc gttgatgctc atcagcgcat gggcgatgtc
    23641 ggcatccagg cggtcaaata ccggctcgcc aagtccggcg gggacgccac tggcaacaac
    23701 ggtgactttc gcgccgatgg agtcgccctc ttttttcagc gcgcgcatca gttcatctaa
    23761 cgcgtcgatt ttgtccggat ccgggcagaa gaacggattt tgttcaacca gcgaccagtc
    23821 tttgatttcc agcggaatgt cgcccatctg ggtcaagcag ccgcggattt caataccaaa
    23881 tttctcggcg agatattttt tggcaatcgc ccctgccgcc acgcgcatgg cggtttcgcg
    23941 ggcggaagaa cgtccaccgc cgcgataatc gcgcagaccg tatttttgtt cgtaggtgta
    24001 atcagcatgg cctgggcgga aaacgtcttt aattgcgctg taatcctgag agcgctggtc
    24061 agtgttttcg atcaacaagc caatgctggt gccagtagta acgccttcaa aaacaccaga
    24121 gagaattttg acctgatccg gctcgcggcg ctgggtggta tagcgcgatg tcccagggcg
    24181 acgacggtcg aggtcatgtt gcaggtccgc ttccgtcagc agaatgcctg gcggaacacc
    24241 atcgacgatg cagccgagcg ccagcccatg cgattcgccg aaggtggtta cgcgaaagag
    24301 ttgtccaatt gtgtttccag ccatcacggc tccgttattg ttgtgtttgc gtgtttactt
    24361 aatctttata aatcgcgaaa tattcacggg ccgccagcag ctgctctttg gtgagcataa
    24421 acacaccatc gccgccgtta tcaaactcca gccaggtgaa cggaacatcc ggatattgtt
    24481 ccataagatg taccatgctg ttgccgactt cacaaatcaa cacgccatca tcagcaaggt
    24541 aatctgccgc gtttccaaga atgcgacgcg tcagtttaag gccgtcggtg ccagatgcca
    24601 ggcccagttc cggctcgtga cggtattcgt ttggcaggtc ggacatatct tccgcgtcga
    24661 catacggcgg gttagtgaca atcagatcgt actgcacttt cggcaagtcg cggaacagat
    24721 cggaacgaat cggaatgacg ttgtggatca gaccgtgttc ttcgatgttc tgttcagcaa
    24781 ccgccagcgc gtcgggagag atatccaccg cgtcgacttc tgcatccggg aaggcataag
    24841 cacaggcaat ggcgatgcag ccgctaccgg tacacatatc taaaatatgc tgcggttgtt
    24901 tgctgatgag tccggcaaat ttattgttga tcagttcacc aatcggcgag cgcggcacca
    24961 gcacgcgttc atcgacgtaa aattcatgac cgcagaacca ggctttgttg gtcaggtaag
    25021 ccaccggaat gcgctcgttg acgcggcgga tcacgcgttc aacaatacga tgtttttcgc
    25081 tggaggtcag acgcgcggtg cgcatatctt ccgggatatc cagcggcagg tagagcgatg
    25141 gtaacaccag ctgtacggct tcatcccacg ggttatcggt gccgtgaccg taccagatat
    25201 ttgccgcgct gaagcggctc actgaccagc gcaacatgtc ctgaatggtt tgcagctcat
    25261 ttactgcttc atcaacgaaa attttatcca cgtattcctc cagggcatga tcgcaataat
    25321 ttcggcggct agtttgccat gaagatgacg ataaatcagc attcacgcgc ggtgagtgag
    25381 gaaaaatacg tttaaaacga tcgattgtgc tacgagtcgg gtaaactgta ggaaaattag
    25441 aaatagagac agataaatga aaaagaaaac aacacttagc gaggaggacc aggctctgtt
    25501 tcgccagttg atggcgggga ctcgcaagat taagcaggac acgattgtcc accgaccgca
    25561 gcgtaaaaaa atcagcgaag tgccggtgaa acgcttgatc caggagcagg ctgatgccag
    25621 ccattatttc tccgatgagt ttcagccgtt attaaatacc gaaggtccgg tgaaatatgt
    25681 tcgcccggat gtcagccatt tcgaggcgaa gaaactgcgc cgcggcgatt attcaccgga
    25741 attgtttttg gatttacacg gtctgacgca gctgcaggcc aagcaggaac tgggcgcgtt
    25801 gattgccgcc tgtcgccgcg aacatgtgtt ttgtgcctgc gtgatgcatg ggcacgggaa
    25861 gtatattttg aagcaacaaa caccgctgtg gctggcacaa catccgcatg tgatggcatt
    25921 tcaccaggca ccgaaagagt acggcggtga tgcggctttg ttggtgttga ttgaagtgga
    25981 agagtggttg ccgccggagt tgccctgagg agttgagcgt gttgtgccag gagcgcggaa
    26041 tggcaggggc gaatgaccct gccaggtgag aaaaggtgcg ctaatacata ttcagtatgt
    26101 aagtgaatcg gcaggtagaa tctatgggct gtcgagatgt cgtgtccacg cgtagcttca
    26161 tatcatgcag ttgcctggac gtaatcggtt gcggctcagg cgtcaccgtc actttggcat
    26221 tatcacagcc ggaagtcgag aaggtcatct gctgtgcgat aaaacggcag tagacaccac
    26281 gctcatcaaa attattcccg ttacacagtt tgccattttc catcaggaaa gtgggcagtg
    26341 tttgctcaat aacaccacct gttgactgca acctgacgac tttgttatgt acaacataat
    26401 tttcattcca ggaaacatca tacggtgcca ggggcaccgc cggacatgaa gaactcacct
    26461 tcgttgggcc aatatagtca ggaaaatcat catcatacgt tttagcgaag ggatctctac
    26521 tcttaacaaa cgacgacaca atccacggac aaccatgtaa attcccatcg taataaacaa
    26581 acatctttaa ttcattacat gtccatcccg ttttggtctg gctatcatac tgctctaatc
    26641 caggacaggc tgacatggat accctgctgt ccgaaatttt cgacatagat ggttgagtag
    26701 aactatcgcc agtccacgaa actaaatccg gctgtgaatt gggcatgaat gtagccttaa
    26761 atatagcgta attaactgaa tctggcgtcg ctataatcag atgaaactca aactc
//
LOCUS       DAJVUY010000043        25796 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.043, whole genome shotgun sequence.
ACCESSION   DAJVUY010000043 DAJVUY010000000
VERSION     DAJVUY010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25796
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.043"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(73..2292)
                     /locus_tag="OQQ72_001615"
     CDS             complement(73..2292)
                     /locus_tag="OQQ72_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HCS2011388.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSSEEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVLHPAYGNVRIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE
                     EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR"
     gene            complement(2403..3815)
                     /gene="ftsP"
                     /locus_tag="OQQ72_001616"
     CDS             complement(2403..3815)
                     /gene="ftsP"
                     /locus_tag="OQQ72_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HCS2011389.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDSRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(3890..4627)
                     /gene="plsC"
                     /locus_tag="OQQ72_001617"
                     /gene_synonym="parF"
     CDS             complement(3890..4627)
                     /gene="plsC"
                     /locus_tag="OQQ72_001617"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HCS2011390.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(4860..7118)
                     /gene="parC"
                     /locus_tag="OQQ72_001618"
     CDS             complement(4860..7118)
                     /gene="parC"
                     /locus_tag="OQQ72_001618"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HCS2011391.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(7664..8146)
                     /locus_tag="OQQ72_001619"
     CDS             complement(7664..8146)
                     /locus_tag="OQQ72_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HCS2011392.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(8199..8591)
                     /gene="ygiW"
                     /locus_tag="OQQ72_001620"
     CDS             complement(8199..8591)
                     /gene="ygiW"
                     /locus_tag="OQQ72_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HCS2011393.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            8743..9402
                     /gene="qseB"
                     /locus_tag="OQQ72_001621"
     CDS             8743..9402
                     /gene="qseB"
                     /locus_tag="OQQ72_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HCS2011394.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            9399..10748
                     /gene="qseC"
                     /locus_tag="OQQ72_001622"
     CDS             9399..10748
                     /gene="qseC"
                     /locus_tag="OQQ72_001622"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HCS2011395.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDS
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPSGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            10858..11439
                     /gene="mdaB"
                     /locus_tag="OQQ72_001623"
     CDS             10858..11439
                     /gene="mdaB"
                     /locus_tag="OQQ72_001623"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HCS2011396.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            11470..11784
                     /locus_tag="OQQ72_001624"
     CDS             11470..11784
                     /locus_tag="OQQ72_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HCS2011397.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(11832..13724)
                     /gene="parE"
                     /locus_tag="OQQ72_001625"
     CDS             complement(11832..13724)
                     /gene="parE"
                     /locus_tag="OQQ72_001625"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCS2011398.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(13753..14334)
                     /gene="yqiA"
                     /locus_tag="OQQ72_001626"
     CDS             complement(13753..14334)
                     /gene="yqiA"
                     /locus_tag="OQQ72_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HCS2011399.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(14334..15161)
                     /gene="cpdA"
                     /locus_tag="OQQ72_001627"
     CDS             complement(14334..15161)
                     /gene="cpdA"
                     /locus_tag="OQQ72_001627"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HCS2011400.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(15186..15608)
                     /locus_tag="OQQ72_001628"
     CDS             complement(15186..15608)
                     /locus_tag="OQQ72_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HCS2011401.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTTVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(15609..16238)
                     /gene="nudF"
                     /locus_tag="OQQ72_001629"
     CDS             complement(15609..16238)
                     /gene="nudF"
                     /locus_tag="OQQ72_001629"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HCS2011402.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHSLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA"
     gene            16443..17924
                     /gene="tolC"
                     /locus_tag="OQQ72_001630"
     CDS             16443..17924
                     /gene="tolC"
                     /locus_tag="OQQ72_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HCS2011403.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN"
     gene            18072..18743
                     /locus_tag="OQQ72_001631"
     CDS             18072..18743
                     /locus_tag="OQQ72_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HCS2011404.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            18749..19909
                     /locus_tag="OQQ72_001632"
     CDS             18749..19909
                     /locus_tag="OQQ72_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS2011405.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLPLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKSQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(19947..20735)
                     /gene="ygiD"
                     /locus_tag="OQQ72_001633"
     CDS             complement(19947..20735)
                     /gene="ygiD"
                     /locus_tag="OQQ72_001633"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HCS2011406.1"
                     /translation="MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVV
                     VSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVT
                     LDKEARGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
                     VASGNVVHNLRTVKWHGDSSPYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGAL
                     SNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            20878..21639
                     /gene="zupT"
                     /locus_tag="OQQ72_001634"
     CDS             20878..21639
                     /gene="zupT"
                     /locus_tag="OQQ72_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HCS2011407.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGISPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(21697..21867)
                     /locus_tag="OQQ72_001635"
     CDS             complement(21697..21867)
                     /locus_tag="OQQ72_001635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011408.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(22127..22780)
                     /gene="ribB"
                     /locus_tag="OQQ72_001636"
     CDS             complement(22127..22780)
                     /gene="ribB"
                     /locus_tag="OQQ72_001636"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HCS2011409.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(22884..23032)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            23154..23444
                     /gene="ubiK"
                     /locus_tag="OQQ72_001637"
     CDS             23154..23444
                     /gene="ubiK"
                     /locus_tag="OQQ72_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HCS2011410.1"
                     /translation="MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRL
                     DLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTEIKKQPDPETLPPTL"
     gene            23728..24279
                     /locus_tag="OQQ72_001638"
     CDS             23728..24279
                     /locus_tag="OQQ72_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HCS2011411.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTM
                     TGQTDLLKNTKETEIGGATGVGVRILNSQSGEVTLGTPVVITFNNTNSYQELNFKVRM
                     ESPGKDATPGNVYAQTDYKIAYE"
     gene            24339..>25796
                     /locus_tag="OQQ72_001639"
     CDS             24339..>25796
                     /locus_tag="OQQ72_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS2011412.1"
                     /translation="MYKKLKLTTISELIKNIYCSLSVLIIGCASAYAVEFNKDLIEAE
                     DRENVNLSQFETDGQLPVGKYSLNAIINNKRTPIHLDLQWVLIDNQTAVCLTPEQLTL
                     LGFTDEIIEEAQQNLIDGCYPIEKEKQITTYLDKGKMQLSISAPQAWLKYKDANWTPP
                     ELWDHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFN
                     NGKSQANNLDFPRIYLFRPIPAINAKLTIGQYDTESSIFDSFHFSGVSLKSDENMLPP
                     DLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQLDVKVEEE
                     DGQVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNV
                     SLHGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDTQLHNQDKETGYSYRANYSK
                     RFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTN"
BASE COUNT         6458 a         6799 c         6369 g         6170 t
ORIGIN      
        1 aaataaatgc ctaatgagat agattctgat gtaatatccc cggtagcaat tctgctaccg
       61 ggaacagcga atttaacgtc caaccgccgc tttaggccgt ttcttcgcac cagcattcac
      121 cggacgagat tgcgtagacg acgctttttt tgccgtagca ggcgtctgac gctgggtcgc
      181 catcggcgta tgtttcgtca acgccggacg ggtattgcgg ttctggcgac gagcttcacg
      241 catctcttca atggttggcg caggcactaa gcaatcgcga cggctaccaa tcagatgctt
      301 tttacccatc gcttccagcg cctggcggat taacggccag tttgccggat cgtggtaacg
      361 caacaacgct ttatgcaaac gacgctgctt gtcgcccttc ggtacgaaga cgtcttcact
      421 cttataacca atcttcgcca gcggtttttt cccggtgtaa tacatggtgg ttgagttcgc
      481 cagcggcgat gggtagaagt tctgtacctg gtcgagacgg aaacgatgct ttttcagcca
      541 cagcgccaga ttcaccatat cttcatcacg cgtaccgggg tgcgcggaga tgaaataggg
      601 gatcagatac tgctctttac ctgcctgttt tgagtaagta tcgaacagct ctttaaagcg
      661 gtcatagctg cccatgcccg gcttcatcat cttcgataac ggcccttctt cggtatgttc
      721 cggggcaatc ttcagataac cgccgacgtg atgggtcgcc agttctttga tatagcgcgg
      781 atcttccacg gcgatgtcat aacgcacacc agaggcaatc aggatctttt taatgccttt
      841 cagatcacgc gcacggcgat agaggttgat cgttggttcg tggttcgtgt ccatgtgcgg
      901 acaaatatcc ggataaacgc acgacaaacg gcggcaggtt tgctcagcgc gtggcgattt
      961 gcagcgcaac atatacatgt tggcagttgg cccaccgaga tcggaaatta cgcccgtaaa
     1021 acctggaacg gtgtcgcgga tcgcttcgat ctcattaatg atcgaatctt cggaacggct
     1081 ctgaataatg cgcccttcgt gctcggtgat agaacagaaa gagcagccgc caaagcagcc
     1141 acgcataatg ttgaccgaaa aacggatcat ttcgtaagcc ggaatacgga cattgccata
     1201 ggccggatgt agcacgcgct tgtatggcag cgcaaaaacg ctgtccatct cttcggtaga
     1261 aagcggaata gcaggcgggt tgatccacac atagcggtcg ccgtgttttt gcatcaatgc
     1321 gcgggcacag cctgggttgg tttcgtggtg cagaatacgc gaagcatggg cgtacagcac
     1381 tttatcgccc ttcactttct cgaaagaagg cagcaacacg taggtttttt cccacggttt
     1441 cgggcgcggt ggctgcacgg ttacggcttt ggcttcctgc tttttcggtg ccaccggttt
     1501 gttatccgcg cacggcaaat cttcaccata cggatgcggg attgggtcga tttttccagg
     1561 ggtatcaaga cgggtggaat ccacgccgct ccagccaggc agggcctctt tcacgataat
     1621 cgcggtatta cgcacatcgc ggatttcact aatcggctcg cccatcgcca gacggtgcgc
     1681 cacctccacc agcggacgct caccgttacc aaacatcagc atgtcggctt tcgaatccac
     1741 cagcacggaa cggcgcacgg tatcggacca gtaatcataa tgtgcggtac gacgcagact
     1801 agcctcaata ccgccgagga tcaccggtac atctttccac gcctctttac aacgctgggt
     1861 ataaaccagt gtggcgcgat ccgggcgctt acccgcgacg ttatccggcg tgtaggcatc
     1921 gtcatgacgt aaacggcgat cggcggtata acggttgatc atcgaatcca tgttgccagc
     1981 agtaacaccg aaaaacagat tcggtttacc cagacgcata aagtcgtctt tgctgctcca
     2041 gtccggctgg gcgatgatcc cgacgcgaaa gccctgcgct tccagcatac gaccgcaaat
     2101 cgccatcccg aagcttgggt gatcgacata cgcgtcgcca gtaaccaaaa tgatgtcgca
     2161 gctatcccag ccaagttgat ccatctcttc actagacatc ggcaaaaacg gtgccggtcc
     2221 aaaacaggcg gcccagtact gcggccagga gaacaggtcg cgatccggtt ggatcaggga
     2281 gatagagctc attttgcttc cagaaatgat aaaaaaataa tcaaaggccg gggattataa
     2341 gccggaacga aagagaaatc gaaaagtatt ccatactcgc cctcctcggg cgagtatgaa
     2401 gattacggta ccggattgac taacagttgc ccaatcgagc cacggtccgc catttccagc
     2461 gtctgactgt tgaagtagaa cgggaagtgc gcccaggaag gctgaccgaa ataaacaagc
     2521 agctccactt gtccgtcaac ccaaacggta tctttccagc ctctgtcttc cgggaacggc
     2581 atcgcaccat tcacgttacg gatctggaac atcacgcctt caatatggaa cgcttgcggc
     2641 tcgtccgcgc gtaccgtcca gcgttcccac gttccttgct gcgcggtgac atcaatacgg
     2701 ttgacgtccc acagttgtcc attaataccc gggtcatcac ccagactgat atcgcgactg
     2761 cgaatcggcg aaccggccat gatttcagtt ggcagcaagc gcatcggaag actgtctgtg
     2821 accagcggca gaaggccggt tgggcgcagc gttagcacca gggtagaaac cagaatgctg
     2881 gatggctcaa agaagccacg aatacgatca acaatgctcg ccgcttcgcc acaggtgatc
     2941 gacacttcat caccgttgct catatccacc agaatctcgc ggcgctcgcc cggtgccaac
     3001 gaaagttgct tcaccgatac aggagcaggc aggaatccct gatcgccaga aatcacatgt
     3061 aacgggcgac tatcgctcat ctgtagttga tagcgacgag agttcgacgc gttcagcagt
     3121 cgcaagcgca cccagccacg cgagacttca acgtacgggc tttgtacacc gttaaccagc
     3181 agcgtatcac caacaaagcc gccgcttccc ggttcgttgt attctggcgt accaaagtta
     3241 tccagccgtt tatcctggat aatgaccgga aaatcatcca caccataatg gttggggata
     3301 ggcagcgact tgctgacttc atcttccacc agccacattc cggcaaggcc gttatagacc
     3361 tgctgagccg tgcggttggg agtattggcg tgataccaca gagtagctgc gttctggcga
     3421 atgggcagta cgggtgccca gtcagcgttt ggcgacatca tccgtgccgg accgcccatc
     3481 agcgggcctg gtacctgtag cccggccacc gtcattgaga cattttctgt caggcggttg
     3541 ctgtaaataa gcttaacatc gtcgcccttc cagacgcgga tagtcggccc caggtaacga
     3601 ccattgattc cccagaccga cgcgcgtgtc cctggcgtaa atgaccagtg cgcacgttgt
     3661 acagtcataa acagcggttg cccacggcga gattcaagta gcggcggaac gggtagcggt
     3721 tgctgttgcc cggctgcgct ggccttcagg ggaacagcgc cggcacaaag tgcaatcccc
     3781 gatgcctgaa tgaactgacg ccgactgagt gacatatttg ctccatgtaa aactggctaa
     3841 agtaataccg tgcaggaaag tgttccccgc aaaaatacag attgccgact taaacttttc
     3901 cggcggcttc gcgttctgcg acttctttat cgagctcggc gattttttgt tccattatcg
     3961 aacgacaatg ggcagccagc tcacgaacct gatctttgcc atactgactg acgtcaattg
     4021 gcggcagcat ttcgacaatc accagaccgt tgtgcagtcg attaagatta atcttattcg
     4081 aagttgtaga gacgcacacg ggaataatcg ggacgcccgc cgcaattgcc gcgtgaaatg
     4141 ctccagtctt gaacggtagc aggccgcgac cacggctgcg ggttccttcc gggaacatcc
     4201 agatggaaat acggcgtttt ttgaaatgat tcacgacttc cgcaatggtg ccgtgagctt
     4261 tagtgcgatt gtttctgtcg atcaataagt tgccggttaa ccagtacaac tgcccgaaga
     4321 aggggatcca cagcaagctc tttttaccta ccgtcaccgt cggcggttgc acaatgttcg
     4381 atgctgtcac catgtcatag ttgttctggt ggttagcgat atagatagca ttgccgtagc
     4441 tttcagcatc tgcaggtttg cggcactcaa ctttcaggcc gaacagcggc gcaagacggc
     4501 caaacatatg cccaaaggtg gccacatgtt tcgggttacg cgggctgaaa aggcagtaaa
     4561 tggagccgaa tacacagact aagatgctgt aaatcacggt aataataaga cgaaagatat
     4621 atagcataac aacctctgaa ggtctgagag actggcattg tacgtcacct gaaatcaggt
     4681 tagggcattg ttaaaagccg ctctctggaa aagcgtattg ttaatcgcaa cgcatgaata
     4741 aacaacggtt tcaagggaat ttttatcgtt tccgggggtt gaatacgctg ccggatgacg
     4801 acttaacgtt tcatccggcg ttccttgcaa gcgggaggaa acaggccctc cccggcatat
     4861 tactcttcgc tatcaccgct gctggcacgg cgaggagagt cgatctcaac acgatcgata
     4921 cgctgcaaac cgcgcatcaa cgtaccgcgg cgtccacgtt cgccagtgac tttctgtaac
     4981 tcttccgggc gcagtttaat tttgcgtttc ccaacatgaa tggtcagcgt gctttgcggc
     5041 ggcagaacgt acaattgcgc cagaccatct tctccacgcg cggcttctgc cgatggaatg
     5101 ttgataatct tgttgccttt gcccttcgac agctgcggca gatcgcttac cgggaacatc
     5161 aacatacggc ctgcctgagt gattgccagc agcatatcgg aagcatcttc aatcaccacc
     5221 ggcggcataa catgggcatt ttccggtaag gtgatcaaag ccttacctgc acggttacgc
     5281 gccaccagat cgttaaaggt gcagacgaaa ccgtaacccg catcggaagc catcagcagt
     5341 ttctgatcgt cgctttccat cagcatatgg tcaacggtcg ccccaggcgg caacgttaat
     5401 ttgccggtga gtggttcgcc ctgaccacgc gccgacggca gcgtaatcgg gtcgatggca
     5461 tagctacgac cggtggaatc aacaaacact accggttggt tgctcttacc tttcaccgcc
     5521 gctttgaagc tatcacccgc tttataattc aggcccggcg cgtcgatatc atggccttta
     5581 gcgctgcgta cccagcccat ctgcgacagc acaatggtga caggttcaga cggcagcatg
     5641 tcgtgctcgc tcatcgcttt cgcttcttcg cgttcctgca acggcgaacg acgatcgtca
     5701 ccgtaggctt gcgcgtctgc ctgcagttct ttcttcagca ggttattcat tttacgctcg
     5761 gaaaccaaaa tgccctgcaa ctggtcgcgc tctttttcca gctcactctg ctcaccgcga
     5821 atcttcatct cttccagttt ggcaagatga cgcagtttca gttcgaggat cgcttccgcc
     5881 tgggtttccg taaggccaaa ccgcgacatc agcgccggtt tcggttcatc ttcgttacga
     5941 atgatctcaa tcacttcgtc gatgttgaga aacgccacca gcaaaccttc caggatatgc
     6001 aggcgcttga ggactttctc cagacgatag ttcagtcggc ggcgcacggt atcgcgacgg
     6061 aacaccagcc attcggagag gatttccagc aggtttttca ccgccggacg accatccaga
     6121 ccgatcatat tgaggttaat gcgatagctc ttttccagat cggtggtagc gaagaggtgg
     6181 ttcatcacct gatccatatc cacgcggttg gaacgcggca caatcaccag acgggtcggg
     6241 ttctcgtggt cagattcatc gcgcagatcg tcaaccatcg gcagcttttt gttgcgcatt
     6301 tgcgcagcaa tttgctccag tacgcgcgca cctgaaacct gatgcggcaa tgcgctgata
     6361 accaccgcgc catcttcttt cttccacacc gcgcgcatac gcactgaacc acgtccgttc
     6421 tcgtagattt tacggatctc ggcgcgcgaa gtgataattt ccgcttcagt cggataatcc
     6481 ggcccctgca cgatatccag cagctgatcg agcgtggttt tcggctggtc gattaatgcg
     6541 attgccgcct gagctacttc acgcaggtta tgcggtggaa tatcggtcgc catgccgacg
     6601 gcaataccgg tggtgccgtt aagcaaaatg tttggcagac gggcaggcag cattttcggc
     6661 tcctgcaaag tgccgtcgaa gtttggcacc cagtcagccg tcccctgccc cagctcgctc
     6721 aatagcagct cggaatattt cgacaaccgg gattcggtgt aacgcattgc cgcgaacgat
     6781 ttcggatcgt ccggcgcgcc ccagttcccc tgaccatcaa ccagcggata acggtaagag
     6841 aacggctgcg ccatcaggac catcgcttca taacaggcgc tatcgccgtg cggatggtat
     6901 ttacccagta cgtcaccgac ggtacgggcc gattttttaa atttggcgct ggcattcagg
     6961 cccagttcag acatcgcata cacaatgcgg cgctgaacag gtttaagacc atcgccaata
     7021 aacggcaacg cacggtccat gatcacgtac atggagtagt ttaagtaggc gttttccgta
     7081 aattcatgta gcgcaaggcg ctctgccata tcgctcatta attctgattc ctcaacttat
     7141 tcgccagcct tcaaaggggc aatattgccg gagatactac attatctgcc gcgtcgagtc
     7201 acaggagatc agcgtgaata gcgccgccgg acgtgctccg acggcgataa aggcatcaat
     7261 gtgccttgat atacaactct ttgctgtaga cttgatcggc atagagggca gcacaaggtt
     7321 gcgcccatgc cacaccactc ggcatggggg tccgctccgg gcgattcgag aagttgaggt
     7381 tatgcgagtc cagggaagcc taaagcatca aagtagtcga ctgtaagtat acggttcagc
     7441 ccagtttagc tgtgtctcca ccagtgcccc gcgcctcctg ccataagtgc ggcttgctca
     7501 tggatacccc cgagacggct tacggcgcac cggataataa atttcgcgta tacatggtat
     7561 tccttaccgg agaaattata agcccaacaa caatacgcct gtggcattgt tcgctcaaac
     7621 ttatcgcgag tgatttggct cacactccgg taaagattcc ccatcacgct aacggcacat
     7681 aaacatccgt ttccagtcgc tgttctgtca taccttcggc aagattggtg tagtgaaaca
     7741 gaatcggtgc tttacgcatt ttctcgccgc ttgcaggcag ccagtggcga atgatgcccc
     7801 ataccgtgtg tgaaatatcg tccagctcgc caacgtggcg ggccacggca taacgtccac
     7861 cggtaagttc accattgctc acaccataac gattatcggg aatcggttcg ctaacgctgc
     7921 cgcagatatc aaagcgaaac gctttcggtg cggtggtggc agggtcgtcc caggcgacgc
     7981 caaaagtctg gctttggtta acaggagaaa gccccgtctc tttacgccac atgataaatt
     8041 tcgccacact gtagttgagc aactcagggc tacagcggtg cggcaacatc gccacaggga
     8101 ttgatgggaa atcgataatg tttacatcca gtgtcaggtt tgtcattttg cctccctgcg
     8161 aaattattcc cgggaacgcg tcccgggagc ggtaacaatt acggatttac tttgcggatc
     8221 tgtttgacgt caatttcaac agaattccag tctttatcga cttccccctg aatctcaacc
     8281 gtatctttcg gcgtcaccgt cacaccgttc cagcgtttgt ggtcgatatc aacattgata
     8341 gtaccgctgg catctttaaa cacgtagaga tcgtcagaga tgcgttcaac gatattgccg
     8401 cgcagggtta cccaggtgtc gtcacgcagg gattttgcgc tttctacagt cgttacgctg
     8461 ccgttcggcc cctggaatcc tccggcctga ctttgcgttg ccgatgggcc agaaaaaccg
     8521 ccctgctctg ctgccatcac cggtgcactg cacagggcca ttactgcgat tactgctgcg
     8581 aattttttca tgtttattac tccctttaat gtctgtttcc gagcatttaa caagatagtc
     8641 cttaacaact tcttaaggga aaaaaataaa atttaatgct gtacagagcg cgttacaaca
     8701 cggtttactg gcagcaaata cggttatcgc agggatgaaa aaatgcgaat tttactgata
     8761 gaagatgaca tgctgattgg cgacggcatc aaaactggcc ttagtaaaat gggttttagt
     8821 gtcgactggt ttacacaagg tcgtcaggga aaagaggcgc tttatagcgc accttatgat
     8881 gcggtgatcc tggatttaac cttaccaggc atggatggtc gcgatatttt gcgcgaatgg
     8941 cgagagaaag gtcagcgtga gccggtactg atcctgaccg cgcgtgatgc gttagcggaa
     9001 cgtgtagaag ggctgcgtct gggagctgac gattatctgt gtaaaccttt tgcgttgata
     9061 gaagtcgccg ccaggctgga ggctctgatg cgccgaacca acggccaggc cagcaacgag
     9121 ctgcgccacg gtaacgtcat gctcgacccc ggcaaacgta tcgccacgct ggctagcgaa
     9181 cccttaacac tgaaaccaaa agaatttgcc ctgctggaat tactgatgcg taacgctggt
     9241 cgggtactgc cgcgcaaact gattgaagag aaactgtata cctgggacga agaggtcacc
     9301 agtaatgccg ttgaagtgca tgtgcatcat ctgcgacgca aactcggtag tgattttatt
     9361 cgtaccgtgc atggtattgg ctacacatta ggtgagaaat gaaatttacc caacgtctta
     9421 gtctgcgcgt caggctgacg ctaatctttt taattctggc ctcggtgacc tggctgcttt
     9481 ccagctttgt cgcctggaaa caaacaacgg ataacgtcga tgaattgttc gacacccaac
     9541 tgatgctgtt tgccaagcgg ttaagtacgc tcgatctcaa cgaaatcaac gcggcggatc
     9601 gcatggcaca gacgccaaat aaattaaaac acggtcatgt tgatgacgat gcgctgacct
     9661 ttgccatctt tacccacgac ggcagaatgg tccttaatga tagcgataac ggagaagata
     9721 ttccctatag ctatcaacgg gaaggttttg ctgacgggca actggtcggt gaagacgatc
     9781 cttggcgttt tgtctggatg acctcacctg atggcaaata tcgcatcgtt gttggccagg
     9841 aatgggaata ccgtgaagac atggcgctgg cgattgttgc cgggcaattg atcccgtggc
     9901 tggtcgcact gccgattatg ttaatcatca tgatggtact actgggtcgt gaactcgcgc
     9961 cgctgaacaa actggcgctg gcactacgta tgcgtgaccc tgactcggaa aaaccactaa
    10021 acgcgactgg cgtacccagc gaagtgcgac cactggttga gtcgctaaat caactgttcg
    10081 cccgcacaca tgcgatgatg gttcgagaac gacgctttac ctccgatgca gctcacgaac
    10141 tacgtagccc gttaacagcg ctgaaagtgc aaaccgaagt tgcgcagctc tctgacgatg
    10201 atccgcaggc acggaaaaaa gcactgctcc aattacattc cgggatcgat cgcgctactc
    10261 gtctggttga tcaactgctc acgctatcgc ggctggactc actggataac cttcaggacg
    10321 tcgcggagat cccgcttgaa gatctcctgc aatcgtcggt gatggatatt taccacacgg
    10381 cgcagcaggc gaaaattgac gtgcgactga cactcaatgt ccagggcatc aaacgcaccg
    10441 gacaaccgct attgctaagt ttgttggtgc gaaatttgct ggataacgcc gtgcgttaca
    10501 gtccacaggg cagcgtggtg gacgtcacgc tgaatgccga taatttcatc gtgagggata
    10561 acggccccgg tgtgacacca gaggcactgg cgcgaattgg cgaacgcttc tatcgcccct
    10621 ccggacaaac cgctaccggc agtggacttg ggctatcgat tgtccagcga atcgccaagc
    10681 tgcatggcat gaatgttgag tttgggaatg cggaacaagg tggatttgag gcgaaagtaa
    10741 gctggtaagg gtaagacttt tgctaaattc gcaaaagact ttgcacattt tgctaatttc
    10801 accgtaccgc tctgtgacgt actatagtcg gcaaacgtct caccttgagg ttaaaaaatg
    10861 agcaacattc tgattatcaa cggcgcgaaa aaattcgccc actccaatgg tcaactgaat
    10921 gacaccctga ccgaagtcgc ggatggcaca ctgcgcgacc tcgggcatga tgttcgcatc
    10981 gttcgcgccg acagcgacta cgatgtcaaa gcggaagtac aaaactttct ctgggctgat
    11041 gtggtgatct ggcagatgcc aggctggtgg atgggcgcgc cgtggacagt gaaaaaatac
    11101 attgatgatg tattcaccga aggtcacggg acgctgtatg ccagcgatgg ccgtacccgc
    11161 aaagatccgt caaaaaaata cggttccggc ggcctggtac agggcaaaaa atatatgctt
    11221 tctctgacct ggaacgcacc aatggaagcc ttcaccgaaa aagatcaatt cttccacggc
    11281 gttggcgtcg acggtgtgta tctgccgttc cataaagcaa accaattcct tggcatggaa
    11341 ccgctgccga catttatcgc taatgacgtg ataaaaatgc ctgatgttcc ccgctatact
    11401 gaagaatatc gcaagcatct tgtggaaatt tttggttaac tagagctcag gctttagaag
    11461 gagttaacca tgcttaccgt aatcgcagaa atccgtactc gtcctggtca acatcaccgt
    11521 caggcggtat tggatcagtt tgctaaaatc gttccaaccg tactgaaaga agaaggttgc
    11581 cacggctatg cgccaatggt ggattgcgct gctggcgtga gtttccagtc tatggcaccg
    11641 gattctatcg tgatgattga gcagtgggaa agcatcgcgc accttgaagc gcatctgcaa
    11701 accccgcaca tgaaggcgta cagcgaagcc gtaaaaggtg acgtgctgga gatgaatatt
    11761 cgtattctgc agccagggat ttaatcctgc cttgtttgcc cggccatcct gaccgggcaa
    11821 tgttctttcc tttaaacctc aatctccgcc atgtcgcctt tctcttgcaa ccagttgcgg
    11881 cgatcttccg agcgtttctt cgccagtagc atgtccatca tcgcgtcagt acgctgatcg
    11941 tcttcatcat cgatagtcaa ctgcaccaga cggcgagtgt tcggatcaag cgtggtttcg
    12001 cgcaattgca tcgggttcat ttcccccaga cctttaaaac gctggacgtt cggcttgcct
    12061 ttcttgcgtt ttaattgctc aagtacgccc tctttctctt cttccgtcag cgcgtaataa
    12121 acctctttcc cgagatcaat acggtagagc ggtggcagtg cgacgtaaac gtgaccgtgt
    12181 ttcaccaacg cgcggaagtg ttttacaaac aaagcgcaga gcagcgtggc aatgtgcaga
    12241 ccatcggagt cagcatccgc caggatacag atcttgccgt aacgaagctg gctcaaatcg
    12301 tcgctgtcag gatcgatacc gatcgctacc gaaatatcgt gcacttcctg cgaagccagc
    12361 acttcgtcgg aagagacttc ccaggtgtta aggatcttac ctttcagtgg catgatcgcc
    12421 tgatattcgc gatcgcgcgc ctgcttggca gatccgcctg cggagtcacc ttccacaaga
    12481 aacagttcgg tgcggttaag gtcctgcgcg gtacagtcag ccagtttgcc aggcagcgcc
    12541 ggaccgctgg tcagcttttt acgcaccact tttttagccg cacgcatacg acgctgggcg
    12601 ctggaaatcg ccatctctgc cagcaactcc gccgcctgaa cgttctggtt cagccacagg
    12661 ataaaggcat ctttcaccac gccagaaacg aatgccgcgc actgacgcga agagagacgc
    12721 tctttggtct gcccggcaaa ctgcggatcc tgcattttta ctgacagcac ataggcgcag
    12781 cgatcccaga tatcttccgc cgacagcttt acaccgcgcg gcagaatgtt gcggtattca
    12841 cagaactcac gcatcgcgtc cagcaggccc tgacgcagac cattaacatg ggtaccgccc
    12901 tgcatcgttg ggatcaggtt gacgtagctt tcggtcagca gttcaccgcc ttccggcagc
    12961 cacagtagcg cccagtccac cgcttcagta tcgccagcga aattaccgat aaacggtttt
    13021 tctggcagcg tcggtaaacc gtttaccgct tccgccaggt aatcattcag accgtcctga
    13081 tagcaccagc gctgttcggt gttgttgatc tcatctttaa aggtaatctc aacgccgggg
    13141 cacagtactg ctttggcttt cagcacatgc gtcaggcgtg aaacagaaaa acgcgggcta
    13201 tcgaagaagg tttcatccgg ccagaaatgg acgctggttc cggtattgcg tttaccgcaa
    13261 gtgccgacaa cctgtaaatc ctgcaccttt tcgccatttt caaaggcgat gttataaatc
    13321 tgaccatcgc ggcgcacgtt aacttctacg cgcttcgaca gggcgttaac caccgaaatc
    13381 cccacgccat gcaggccgcc agagaactgg taatttttgt tagagaattt accgcctgca
    13441 tgcagacggc aaagaatcag ttcaaccgcc ggtacaccct cttccgggtg aatatccacc
    13501 ggcatcccgc gcccatcgtc aataacttct aacgactggt cagcatgtaa aataacgtcc
    13561 acgcgttttg cgtgacccgc cagtgcttca tccacactgt tatcaatgac ttcttgcccc
    13621 aaatggttag ggcgagtggt atcggtatac atccccggac ggcggcgaac cggctcaagc
    13681 ccggtgagta cctcaatggc atcagcgtta taagtttgcg tcatggttta agttagtaat
    13741 tcgagttgat cgtcagagat ggtgcagacc aagaaaatcg acgatcgggt tgaaataatc
    13801 ttcgaagccc gtgaatgcgt ggttgccgcc ttctatgaca gtctggcggc aggaagcgta
    13861 gtacgccacc gcctggcggt aatccagcac ttcatctccc gtctgttgca gcagccagat
    13921 caaatccggc gcttccagcg ggtcaatctg catgacttta agatcgtaaa tatggcgtga
    13981 ctctagcaca tattgctgcc cggtgtaggg gttctcgttc tgaccgagat agtccgtcag
    14041 cagttcaaac gggcgcaccg ccgggtttac caccactgcg ggcagcataa aacattgtga
    14101 caaccaggtg gcgtaatatc cccccagtga cgaaccgaca atacccagcg aatcgccgcc
    14161 atgttccagg acaatggatt ccagcagctc tgccgcgtcg gaaggatacg gcggcaactg
    14221 cggaatgatc atctcaacgt cagggtgatg ttccgccagc cagtttttta acaagctcgc
    14281 ttttgcagag cgcggcgagc tgttgaaacc gtgtaaataa agaagcgtag acatcagtag
    14341 ccttctgaag cggtatcagg ttggaaacgt gtgtccgcca ggcgatgcac ctcggtggtc
    14401 agcgtgccat cagcatgtaa ctcgagagta cgccagccgg gcgcgatggt atccagcgta
    14461 aagttggaac agtgcggctt aaactgcaca caggtcgacg gcgttgccag caggcggcga
    14521 ccgttccagt cgagatccag ctcctgatga atatgaccgc acagcaagta tttgacgtgc
    14581 ggaaacttcg ccagcacggt atccagttcg cccgcgttac gcagactgtg ttgatcgagc
    14641 caactacaac ccgcaggtag cggatgatga tgcagcagca gcaacgtatg gcgttctggc
    14701 gcatcggcca gtttacgttc cagccactca agctgaaact cgctcagctc accgtgcggc
    14761 acgccaaaca cctggctatc cagcaacagg atttgccatt gctcaccaat aaacacgcgc
    14821 ttcgccgggg agatacccgc atcctgtaac gcgctgtaca tcgcgggctg gaaatcgtgg
    14881 ttgcccggca gccagacgca gggcgcacga aaacttgcga tgccttcagc gaaatgctga
    14941 taggccgcag aggattgatc ctgcgctaaa tcacctgtcg cgacaatcag gtcgaattcg
    15001 tgctgatgtg gacgaatcgc ctccagcacc gcctggtagc tttcccaggt gtttacccct
    15061 aacagggctt cgtgcttttg tgcaaacagg tgagtatcgg taatttgtaa aatcctgact
    15121 ctggcctcac cagccagagg aagggttaac aggctttcca aatggtgtcc ttaggtttca
    15181 cgacgctagt aaaccggaat cgccatcgct ccatgtgcta aacagtatcg caaccagtcc
    15241 gctaaaaact ggttaatttg atgcttttcg tcgcgttgat gcaacttttt attaggataa
    15301 tcataccgcg ctttgaagcg aaaaatctgc tggcttgaac acacttcagc caccatcgcg
    15361 tcatgataca gacgcaccgt cattgacgga aggctccagt aactgatcgc gggcgcagtc
    15421 tgttctattg tcaccagggt agtgtatcgg gtcgattcca cagtcgtcag ccgatattgt
    15481 gcgtttgcca cctgatagct tacagtttcg ccgggtgcgt cattgcgcgg taacaaacgg
    15541 cgcaattgtg aaaagttcat ctcgcacagg cgcatcattt caggaaagtc aggtgtgtaa
    15601 cgcttcattt atgcccactc attttttaac gcttggtggt gcagctgcag ccattgcaaa
    15661 gcgatgaccg acgctgcgtt gtcgattttc ccctcttcta cccactggta tgcctgttcc
    15721 cggcttacca catgaacgcg aatatcttcg ttttcatcag ccagaccatg aataccgctt
    15781 gcggtcgtgg cgtccacttc gcccaccata attgacgaac gctcactggt gccccccggg
    15841 cttgccagga aacttaacac cggtttggtc cgtttgacta tcagccccgc ctcttcaatc
    15901 gcttcgcgac gggcaacatc ttccacactt tcaccctctt caatcatccc ggcaaccatc
    15961 tccagtagcc agggggtttc gctagtgtcg tacgcggcaa ttcgaatctg ctcaatcagc
    16021 acaacttcat cacgcactgg gtcaaagggt agcaagactg cggcgtgacc gcgctcaaaa
    16081 atttcccgcc gcacctcatg actcatttgc ccgttgaata gactatgacg aaatctataa
    16141 agatctaatg aaaaaaagcc gcgataaagt gtttctcgtg caataatttc tacatcgttt
    16201 ttgccaaatg taacgggcag gttgtctggc ttaagcattg ttaatgtcct ggcactaata
    16261 gtgaattaaa tgtgaatttc agcgacgttt gactgccgtt tgagcagtca tgtgttaaat
    16321 tgaggcacat taacgcccta tggcacgtaa cgccaacctt ttgcggtagc ggcttctgct
    16381 agaatccgca ataattttac agtttgatcg cgctaaatac tgcttcacca caaggaatgc
    16441 aaatgaagaa attgctcccc attcttatcg gcctgagcct ttctgggttc agttcgttga
    16501 gccaggccga gaacctgatg caagtttatc agcaagcacg ccttagtaac ccggaattgc
    16561 gtaagtctgc cgccgatcgt gatgctgcct ttgaaaaaat taatgaagcg cgcagtccat
    16621 tactgccaca gctaggttta ggtgcagatt acacctatag caacggctac cgcgacgcga
    16681 acggcatcaa ctcgaacgcg accagtgcgt ccctgcagtt aactcaatcc atttttgata
    16741 tgtcgaaatg gcgtgcgtta acgctgcagg aaaaagcagc agggattcag gacgtcacat
    16801 atcagaccga tcagcaaacc ttgatcctca acaccgcgac cgcttatttc aacgtgttga
    16861 atgctattga cgttctttcc tatacacagg cacaaaaaga agcgatctac cgtcaattag
    16921 atcaaaccac ccaacgtttt aacgtgggcc tggtagcgat caccgacgtg cagaacgccc
    16981 gcgcgcagta cgataccgtg ctggcgaacg aagtgaccgc acgtaataac cttgataacg
    17041 cggtagagca gctgcgccag atcaccggta actactatcc ggaactggcg gcgctgaatg
    17101 tcgaaaactt taaaaccgac aaaccacagc cggttaacgc gctgctgaaa gaagccgaaa
    17161 aacgcaacct gtcgctgtta caggcacgct tgagccagga cctggcgcgc gagcaaattc
    17221 gccaggcgca ggatggtcac ttaccgacgc tggatttaac ggcttctacc gggatttctg
    17281 acacctctta tagcggttcg aaaactcgtg gtgccgctgg tacccagtat gacgacagca
    17341 atatgggcca gaacaaagtg ggcctgagct tctcgctgcc gatttatcag ggcggaatgg
    17401 ttaactcgca ggtgaaacag gcccagtaca actttgttgg tgccagcgag caactggaaa
    17461 gcgcgcatcg tagcatcgtg caaaccgtac gttcctcctt caacaacatt aatgcatcta
    17521 tcagtagcat taacgcctac aaacaagccg tagtttccgc tcaaagctca ttagacgcga
    17581 tggaagcggg ctactcggtc ggtacgcgta ccattgttga tgtgttggat gcaaccacca
    17641 cgctgtacaa cgctaagcaa gagctggcaa atgcgcgtta taactacctg attaatcagc
    17701 tgaatattaa gtcagccctg ggtacgttga acgagcagga tctgctggca ctgaacaatg
    17761 cgctgagcaa accggtttcc actaatccgg aaaacgttgc cccgcaaacg ccggaacaga
    17821 atgctattgc tgatggttat gcgcctgata gcccggcacc cgtcgttcag caaacatccg
    17881 cacgcactac caccagtaac ggtcataacc ctttccgtaa ctgatgacga cgacggggct
    17941 tcggccccgt ctgaacgtaa gacaacgtaa agatacgggt tatctgccgc attcttcccc
    18001 cttctcgctt caatttcgac cagccatcct ctattctgat gggtatttac cactggtccc
    18061 ggaagacaaa aatgaaacgg acaaaatcca tacgccacgc atcgttccgc aaaaactgga
    18121 gcgcacgcca tctgacacca gtcgctctcg cggttgccac tgtttttatg ctggctagct
    18181 gtgaaaagag tgatgaaaca gtgtctctct atcaaaatgc tgacgactgt tcagctgcaa
    18241 acccaggcaa aagcgccgaa tgtaccaccg cgtacaacaa tgcgctgaaa gaagccgaac
    18301 gtactgcgcc gaaatacgcc acccgtgaag actgtgttgc tgaatttggt gaaggtcagt
    18361 gccagcaggc accagcccag gctggcatgg caccagaaaa ccaggcgcag gcccagcaat
    18421 ccagcgggag tttctggatg ccgctgatgg ccggttacat gatggggcgt ctgatgggcg
    18481 gcggcgcggg atttgcacag cagccgctgt tctcctcgaa aaacccagcc agcccggctt
    18541 acggtaaata taccgacgcg acgggtaaaa actatggcgc agcccagcca ggccgcacca
    18601 tgaccgtacc gaagacagcc atggcaccaa aaccggcgac cactactacc gttacccgtg
    18661 gcggttttgg tgaatctgtt gccaaacaaa gcactatgca gcgtagcgca accggcacct
    18721 cttctcgttc aatgggtggc tgataccgat ggaaagagtc agtattaccg agcgcccgga
    18781 ctggcgtgaa aaagcccacg aatacggttt caattttcac accatgtacg gcgagccgta
    18841 ctggtgtgaa gatgcttact acaagttgcc cctcgcccag gttgaaaagc tggaagaagt
    18901 caccgccgaa ctgcaccaga tgtgcctgaa agtggtggaa aaagtgatcg ccagcgatga
    18961 gctgatgacc aaattccgca ttccaaaaca cacctggagt tttgtgcgtc agtcatggct
    19021 gactcaccag ccatcgcttt attcgcgtct tgatctggca tgggatggca ctggcgaacc
    19081 taaactgctg gaaaataacg ccgatacacc aacgtcacta tacgaggcgg cgttctttca
    19141 gtggatctgg ctggaagatc agcttaacgc cggtaacttg ccggagggca gcgaccagtt
    19201 taacagtctg caagaaaagc taatcgatcg ctttgtcgag ttgcgtgaac agtatggctt
    19261 ccagttgctg catctcacct gctgtcgcga cacggtggaa gatcgcggaa ccattcagta
    19321 tttgcaggac tgcgcgacgg aagctgaaat cgctaccgag ttcctctaca ttgacgatat
    19381 cgggttaggt gaaaaaagtc agttcacgga tttacaggat caggtaattt ccaacctgtt
    19441 caagctgtat ccatgggaat ttatgttgcg tgagatgttc tccaccaagc tggaggatgc
    19501 aggcgtacgc tggctggaac cggcgtggaa gagcattatc tccaacaaag cgcttctacc
    19561 gctactgtgg gagatgttcc cgaatcaccc gaacctgctg cccgcttatt ttgcggaaga
    19621 tgatcatccg caaatggaaa aatatgtggt taaaccgatc ttctcccgtg aaggcgcaaa
    19681 cgtgtcgatc attgagaacg gcaaaaccat tgaagcagcg gaaggtccgt atggcgaaga
    19741 agggatgatt gttcagcaat tccatccgtt accgaaattc ggcgacagct atatgctgat
    19801 tggtagctgg ctggtgaacg atcaacccgc cggaattggc attcgtgaag accgtgcatt
    19861 gatcacccag gatatgtctc ggttttatcc acatattttt gttgagtaat caatgatgcc
    19921 ggatggcatt cgccatccgg taattgttaa cctatctgca ccgacagcat actcaggctg
    19981 cccatttcta taccatcgac cggaatggta attggctcct gcccatccca cgcacctaag
    20041 acatacaaca acggcagata gtgctccggc gttgggttcg ataacgcgcc accttcatgg
    20101 tcgaggtaat tcaccagagg atgctgctct accgcccctt gccacgtcag attcgctttc
    20161 acatactcat taaacgacat cgcccaagga tatggtgaac tatcaccgtg ccacttcact
    20221 gtacgcaggt tatgcaccac gttgccactg gcgaccaaca ttattccttc atctcgcagc
    20281 gctgccagtt tgcgccccat ttcgaaatgc caggcggcag gtttgctact gtcgatactc
    20341 aactgcacca tcgggatatc ggcgtcagga tacatcttaa tcagcacgcc ccaggaaccg
    20401 tggtcaaagc ccctggcttc tttatccagc gtcaccggga ccggcgctaa cagctcaacc
    20461 agatgctgtg ccagcacagg cgaacccgga gcaggataat gcgtatcgta cagcgcctgc
    20521 gggaagccac caaagtcatg aatcgtgggc ggcgtctcca tcgcggtcac tcctgttcca
    20581 cgggtaaacc agtgagccga aaccaccaca atcgcttgcg ggcgtggcaa tgtcatcccc
    20641 aacttctgcc agctgcgggt atacaaatta tcttccagca cgttcatcgg actaccgtga
    20701 cctaaaaaca atgctggcat acgtgttgaa gacatgatga tatccttaac taagggtgtc
    20761 attttgatat cctcacaata cgcttgttcg gcggagtaag aacccggata acaatgatga
    20821 tgatcatcag ttattttgac gatctgcctg aaggtgaaga tttataagga gttgtcgatg
    20881 tcagtacctc tcattctgac catactggcg ggggcagcca cgtttattgg cgcgtttctc
    20941 ggcgttctcg gacaaaaacc ctcgaaccgc ttactggcgt tttcgctagg ttttgcggcg
    21001 gggatcatgt tgctcatctc attaatggaa atgcttcctg ccgcactagc agctgaagga
    21061 atatcgcctg tgttgggtta tggaatgttt atcttcggtc tgcttggcta ctttggcctg
    21121 gaccgcatgt tgccgcatgc gcatccgcag gatttaatgc aaaaatcggt gcagccgttg
    21181 ccaaaatcga tcaagcgcac agccattctg ctcactctcg gcatcagtct gcataacttc
    21241 ccggaaggga ttgccacctt tgtcacggcg agcagcaacc tggagctggg atttggcatc
    21301 gcactggccg tcgcgttgca caatatccct gaaggtctgg cagtggcagg cccggtttat
    21361 gcggcaacgg ggtctaaacg caccgcgatt ctgtgggcgg ggatttctgg actagcagaa
    21421 attcttggtg gtgtgctggc gtggttaatc ctcggtagca tgatttcccc ggtggtcatg
    21481 gcggcggttg caggaattat ggtggcgctc tcggttgatg aattaatgcc gctcgccaaa
    21541 gagattgacc ctaataataa ccccagctat ggcgtactat gtggaatgtc agtgatggga
    21601 ttcagtttag tgctgctaca aacggcggga attggttaaa aacaacatca gaagttgtcc
    21661 agcacatgga caacttctgc cagcttcacg aaagccttat tctacctttt cggctgtctc
    21721 ttctctcgta ctgtttaagt atttgttccg cgcttcaagc agtgcgtctc tgtcctggcg
    21781 aaacgcccga caataacgtt tcaaatgcag gaaataaccc accacaacca gagcaatcaa
    21841 tacaatccag taccaggcga taaacatcct ttacccttaa tatttaacaa tactaaacat
    21901 ttagcgcata aatttcacat atcctttttc ggatatattc atatggtcgc ataataacgg
    21961 aacaattata tgattttgat cataatgaaa aagaatgcct gatattaatg aaattttctc
    22021 atagaaagag aagcggaatt aacatcttgc atagcagggc aaaataaaaa ccgaagccag
    22081 ctacaacttc ggtttcttga ttaaggcagt aattaagcag cggttttcag ctggctttac
    22141 gctcatgtgc ctgacggtat gccaccaggt cttcaatagt cacgagcgcc atattgtgtt
    22201 tattggcaaa ctcaatgcac tctggtgcac gcgccatcgt gccatcgtca ttagtcagct
    22261 cacacagcac accagccggt ttaaagcctg ccagcgtcat caaatcaata gtcgcttcag
    22321 tatgaccgcc acgcgtcagt acaccacctg cctgcgcgcg aagtgggaaa acgtggcccg
    22381 ggcgattcag atcagaaggt tttgcgccat cggcaatcgc tgcgcgaacg gtcgtaatac
    22441 gatcagcggc agaaacaccg gtagtcacac cttcagccgc ttcaatggtc acggtaaaac
    22501 cggtgccata ggcgctggtg ttattttcta ccatcattgg cagatcaagt tgtttacggc
    22561 gatcttcagt gatgcacagg caaacaatac cgctaccgtg gcgaatggtc agcgccatct
    22621 gctcaacggt catggtttct gccgggaaga tcatatcgcc ttcgttttca cggtcttcat
    22681 catcaagcac cattacaccg cgtccttcac gcagcgcagc cagtgcattt tcaacacgtt
    22741 cgaaaggcgt accaaaagag gaaagtagcg tctgattcat ggtaaaaaaa actcactaaa
    22801 attatggtta ccagaatcag ggcagtctta ggagtggcgg catatagcca aaataacgtg
    22861 agcgggtcca tgcccgacag aatcgttact ctctcccatc cggactctaa ccgtcggccc
    22921 cggaattaca ccggatctgc tgtcctttga gttcgcaccc aaagcgctcg cgggctttca
    22981 actgagttga tttaccgccg gtggggaatt tcgccccgcc ctgagaataa gcggattcac
    23041 tataacgcta atgattagcg gcagcaacgc atagcttcac ataattctgg tttatgactt
    23101 acccttatcg cactacaatg gtactcaaca cctatcagta cagggaaact acaatgattg
    23161 acccgaaaaa aattgagcaa atcgctcgcc aagttcacga atcaatgcct aaaggaatca
    23221 gggagttcgg ggaagatgtg gagaaaaaaa tccgccaaac cctacaagct cagctgacgc
    23281 gcctcgacct tgtaagccgt gaagagttcg acgtccaaac gcaagtcctg ttacggactc
    23341 gtgagaaact ggcgctgctt gaacaaagaa tgagcgaact ggaaaatcgc agtactgaga
    23401 ttaaaaagca gccagatcca gagactctcc ccccaacgct gtaaacattt gtctttaatg
    23461 cactgtaaat tatgaattaa tcttctaatt tacagtgctt tctattacct tatcgcttaa
    23521 ttccattcag aatatcacca caaaaatgaa tgagtgcaat tgaaaatatt attgttatgt
    23581 atttttttaa gttttactta atccatattt agataaacta atttcataaa acccgaaaag
    23641 taaaatataa tatttgaatg attagcaatc cttaaataac agttactaat cattcatttt
    23701 ctacttatat ttatataaag gaatattatg tctgctttta aaaagtcact tcttgttgct
    23761 ggcgtagcaa tgattctttc caataacgta tttgctgacg aaggtcacgg cattgttaaa
    23821 tttaaaggtg aagttatctc tgctccatgt tcaattaaac caggtgacga agacttaact
    23881 gtaaatctgg gtgaagtagc agataccgtt ctgaaaagcg accagaaatc tttggctgag
    23941 cctttcacta ttcacctgca agactgcatg ttgagccagg gtggaaccac ttattcaaaa
    24001 gcgaaggtta ctttcaccac agcgaatact atgacgggtc agactgacct gctgaaaaac
    24061 accaaagaaa ctgaaatcgg tggtgccaca ggcgttggcg tacgtattct gaatagccag
    24121 agcggcgaag tgactttagg tactccggta gtaattacat tcaacaatac taacagctat
    24181 caggaactga acttcaaagt tcgtatggaa tccccgggca aagatgctac cccgggcaac
    24241 gtttacgctc agactgacta taagattgct tacgagtaat cacattaggc cgggttcgcc
    24301 cggccacatc attaacggat taatgataag tggaacagat gtataaaaaa ttaaaattaa
    24361 ccacaataag cgaattgatt aaaaatattt attgttcatt atccgttctc atcattggtt
    24421 gtgcgtcagc ttatgccgtt gaattcaaca aagatttaat cgaagccgaa gatcgtgaaa
    24481 acgttaacct ttcccaattt gaaactgatg gccaattacc cgtaggtaaa tactcattaa
    24541 acgctattat taataataaa aggacgccaa tccatctgga cctgcaatgg gtattaattg
    24601 ataaccaaac tgcagtttgt ctgactccag agcaattaac attattaggc tttactgatg
    24661 agattattga agaggctcag caaaacctga tcgatggttg ttaccctatc gaaaaagaaa
    24721 aacaaattac aacttatctc gataaaggga aaatgcaatt atccatatct gcacctcagg
    24781 catggttaaa atacaaagat gcaaactgga cgcctcctga actttgggat catggtattg
    24841 ctggggcatt tcttgactac aatttatatg cctctcatta tgcaccacat cagggcgata
    24901 attcacaaaa tataagttcc tatgggcagg ctggggttaa tcttggggcc tggcgcctgc
    24961 gtactgatta ccagtacgat cagtcattta acaatggcaa aagccaggcg aacaacctgg
    25021 attttccgcg tatttatttg tttcgcccaa tcccagcaat taatgcaaaa ctaactatag
    25081 gtcaatacga tactgaatcc tctattttcg actctttcca tttttctggc gtttcgttga
    25141 aaagcgatga gaatatgttg ccgcctgatc tacgtggtta cgcaccgcaa atcacgggtg
    25201 ttgcacaaac gaatgcaaag gtcactgtct cacagaacaa ccgtattatt tatcaagaaa
    25261 atgttcctcc tggcccattt gctattacta atttattcaa tacattacag gggcaactgg
    25321 acgtcaaggt tgaagaagag gacgggcaag tcacgcaatg gcaagttgca tctaatagta
    25381 ttccttatct gacgcgtaaa gggcagattc gctacaccac tgctatgggt aaaccgacca
    25441 gcgttggtgg tgattcctta caacaaccct tcttctggac tggtgaattc tcatggggtt
    25501 ggctgaacaa tgtatccctg catggtggtt cagttttaac aaaccgtgat tatcaatctc
    25561 tggctgccgg cgttggcttt aaccttaact cattgggttc attatctttt gatgtcacac
    25621 gatctgatac tcagttgcat aatcaggata aagaaacggg ttatagctac cgcgctaact
    25681 attcaaaacg ttttgaatct accggtagcc agctcacttt cgctggttac cgtttctctg
    25741 ataaaaactt tgtgacaatg aatgaatata tcaatgacac taaccattac acgaat
//
LOCUS       DAJVUY010000044        25789 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.044, whole genome shotgun sequence.
ACCESSION   DAJVUY010000044 DAJVUY010000000
VERSION     DAJVUY010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25789
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.044"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            353..1711
                     /locus_tag="OQQ72_001640"
     CDS             353..1711
                     /locus_tag="OQQ72_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000823236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HCS2011413.1"
                     /translation="MKRKIIPVLIGCTLSFSALAAQPTAERYVVSFPEGTHVNYAGAF
                     ASAFPNGLPVGIGSGLLFTGKQGDALTFATITDRGPNADSPKEGKNETKIFVTPDFAP
                     LLMTIRVQNGKAEAIDPRPLHDDKGAINGLPLASDVIGSTNEVAFSDTLHRLKGDNRG
                     LDTEGITPDGKGGYWLCDEYGPFLINIDSKGKILAIHGPQAAEGEKAIAGGLPNILKW
                     RQANRGFEGLTRMPDGRIIVAVQSTLDIDAKSKKKALFTRLVSFDPASGKTAMYGYPI
                     DSAAYSKNSDAKIGDIVALDNQHILLIEQGRDKNNRMRNLIYEVDLNKASDLSGFDKP
                     GEYPEFDDEKTLSQRGITLAQKTQVVDLRSLGWQQEKAEGLALIDSKTLAVANDNDFG
                     VKVAMQHPVEGKTFKDYRVNAEGKLTLDDKQVETTLRVKPLEKPESDSELWIVTLPEA
                     LK"
     gene            complement(1950..3335)
                     /locus_tag="OQQ72_001641"
     CDS             complement(1950..3335)
                     /locus_tag="OQQ72_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS2011414.1"
                     /translation="MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQL
                     DKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPF
                     PESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
                     DTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG
                     WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNA
                     GSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHA
                     RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLES
                     WLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSE
                     LLPWRIALPAE"
     gene            complement(3385..3732)
                     /gene="tnpB"
                     /locus_tag="OQQ72_001642"
     CDS             complement(3385..3732)
                     /gene="tnpB"
                     /locus_tag="OQQ72_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019104956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2011415.1"
                     /translation="MIPLPSGTKIWLVAGITDMRNSFNGLAAKVQTALKDDPMSGHIF
                     IFRGRSGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTQAQLAMLLEGIDW
                     RQPKRLLTSLTML"
     gene            complement(3729..4109)
                     /locus_tag="OQQ72_001643"
     CDS             complement(3729..4109)
                     /locus_tag="OQQ72_001643"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS2011416.1"
                     /translation="MQKNVTPGRRKGCPNYPPEFKQLLVAASCEPGISISKLALENGI
                     NANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAAAEQPESLAEDPETLSISCEVTFR
                     HGTLRFNGNVSEKLLTLLIQELKR"
     gene            complement(4464..4898)
                     /locus_tag="OQQ72_001644"
     CDS             complement(4464..4898)
                     /locus_tag="OQQ72_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HCS2011417.1"
                     /translation="MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQR
                     GNDGQPPWFEHDQMTVAEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVM
                     CDEDYEGEKCCPRCGTGVYSRAWGRQEVPSEDARADNPLQRL"
     gene            complement(4886..5287)
                     /locus_tag="OQQ72_001645"
     CDS             complement(4886..5287)
                     /locus_tag="OQQ72_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004020115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011418.1"
                     /translation="MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQY
                     ETELPWFEHTDDRLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQC
                     HHDYYGEQYCTHCQTGGFSIPRTTQEEICEF"
     gene            complement(5547..6116)
                     /locus_tag="OQQ72_001646"
     CDS             complement(5547..6116)
                     /locus_tag="OQQ72_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000221568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus Gp2 family protein"
                     /protein_id="HCS2011419.1"
                     /translation="MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRLPDVPAATD
                     AAVISRFINALKARIDAYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVN
                     RDTWCRAGDYRAPESLAGMIKQAWCSALGVDVGCHATLVHFPAWPAVWLARNDDTGFQ
                     QVLERADYLAKEHTKAHCTGERNFGCSRS"
     gene            complement(6861..7004)
                     /locus_tag="OQQ72_001647"
                     /pseudo
     CDS             complement(6861..7004)
                     /locus_tag="OQQ72_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000453335.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin activation protein"
     gene            complement(7338..7604)
                     /locus_tag="OQQ72_001648"
     CDS             complement(7338..7604)
                     /locus_tag="OQQ72_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000840368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011420.1"
                     /translation="MAEPYRYTGWLLRKDASARTRDKEGIVFVRTGREAGVLIIAELF
                     SEVVTVSQPVPGEEETDITDGIRLSDWYYKYKKSSESNVKDLPE"
     gene            7745..7951
                     /locus_tag="OQQ72_001649"
     CDS             7745..7951
                     /locus_tag="OQQ72_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS2011421.1"
                     /translation="MATPVSLMDDQMVDMAFITQLTGLTDKWFYRLIRDGAFPAPIKL
                     GRSSRWLKSEVEAWLQARIAQPRP"
     gene            8046..8648
                     /locus_tag="OQQ72_001650"
     CDS             8046..8648
                     /locus_tag="OQQ72_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011422.1"
                     /translation="MKQQYQTRYEWLHESYQKWLTGFTRHAVSWGVCHPNIYYFHNLT
                     PGWVSFNGEKPEIAIVPQSLHRLIYGPDKRATPPLDDDLIVNLCTSEHLLVHHPMLEG
                     ILLSECERLRQRSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLEDWKENLKRK
                     SEKELEEWIINRQRQSAALTDLMDQYVLLAYRTTVDDSRN"
     gene            9848..10765
                     /locus_tag="OQQ72_001651"
     CDS             9848..10765
                     /locus_tag="OQQ72_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011423.1"
                     /translation="MVQKILSDKVMNERTNAYYSYYLGERNISVLPLNVYDPPERFIA
                     YIKKNRENLNITLSDFELEQIISGMRLKALAFLVPLEKISWIAGSERACLFSWYLLMQ
                     FIQNNRAKISADLLQKNKLYLKEEYLEGNAFPSDSSTQFRQILRVLDILSDKNLRDEW
                     IIQTKDRWMRAFKSKSPFSYLLPENEHECIWTWNYLKGKNIALEKLASFPGSADIYHA
                     IHLSFDIWVTCPLTSPDDIKNFRNSFNKAKAQRKYKKMQEDKVNVQFFLDAETRAQLK
                     ELSRVRRLSTGEMLHDLIVEEYKRYRHSR"
     gene            10850..11722
                     /locus_tag="OQQ72_001652"
     CDS             10850..11722
                     /locus_tag="OQQ72_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase family protein"
                     /protein_id="HCS2011424.1"
                     /translation="MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGK
                     SGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDA
                     EYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
                     HEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALP
                     DHAASPLMTRLQDELRTESVRGQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDT
                     VVSVARAVWNWIFF"
     gene            12094..14940
                     /gene="ag43"
                     /locus_tag="OQQ72_001653"
     CDS             12094..14940
                     /gene="ag43"
                     /locus_tag="OQQ72_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Ag43"
                     /protein_id="HCS2011425.1"
                     /translation="MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVVLSLAA
                     VTSVPALAADTIVQAGETVNGGTLTNHDNQIVLGTANGMTISSGLEYGPDNEANTGGQ
                     WIQNGGIANNTTVTGGGLQRVNAGGSVSDTVISAGGGQSLQGQAVNTTLNGGEQWVHE
                     GGIATGTVINEKGWQTVKSGAMATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINE
                     NGRQIVAAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASGTVVNSDGWQ
                     IIKEGGLADFTTVNQKGKLQVNAGGTATHVTLKQGGALVTSTAATVLGSNRLGNFTVE
                     NGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSG
                     ATVEGTNASGKFSIDGTSGQASGLLLENGGSFTVNAGGLASNTTVGHRGTLTLAAGGS
                     LSGRTQLSKGASMVLNGDVVSTGDIVNAGEIRFDNQTTPDAALSRAVAKGDSPVTFHK
                     LTTSNLTGQGGTINMRVRLDGSNTSDQLVINGGQATGKTWLAFTNVGNSNLGVATSGQ
                     GIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYTS
                     MLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSY
                     GFVRLEGDLLRTEVAGMSLTTGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNL
                     THTSSGLWADIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQL
                     HYTWQGLTLDDGQDNAGYVKFGHGSAQHVRAGFRLGSHNDMSFGEGTSSRDTLRDSTK
                     HRVSELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSRNGTSLDLQAGLEARV
                     RENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF"
     gene            15011..15169
                     /locus_tag="OQQ72_001654"
     CDS             15011..15169
                     /locus_tag="OQQ72_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001550547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 family protein"
                     /protein_id="HCS2011426.1"
                     /translation="MPGCTSRLLPEGPFSREQAVAVKTAYRNVFTEDDQGTYSRLVIR
                     NAEGQLRW"
     gene            15324..16142
                     /locus_tag="OQQ72_001655"
     CDS             15324..16142
                     /locus_tag="OQQ72_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HCS2011427.1"
                     /translation="MRLASRFGYANQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRY
                     AYIPTITVLESLQQEGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIIL
                     LNSHDGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFD
                     RIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWS
                     AYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR"
     gene            16484..16957
                     /locus_tag="OQQ72_001656"
     CDS             16484..16957
                     /locus_tag="OQQ72_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HCS2011428.1"
                     /translation="MKTLSQNTTASACAPETGLQQLVATPVPDEQRISFWPQHFGLIP
                     QWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGN
                     RAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID"
     gene            16973..17449
                     /locus_tag="OQQ72_001657"
     CDS             16973..17449
                     /locus_tag="OQQ72_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HCS2011429.1"
                     /translation="MQQLSFLPGNMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL"
     gene            17512..17733
                     /locus_tag="OQQ72_001658"
     CDS             17512..17733
                     /locus_tag="OQQ72_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HCS2011430.1"
                     /translation="MRIITRGEAMRIHQQHPASRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            17896..18270
                     /locus_tag="OQQ72_001659"
     CDS             17896..18270
                     /locus_tag="OQQ72_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system YeeU family
                     antitoxin"
                     /protein_id="HCS2011431.1"
                     /translation="MSDKLSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLYYL
                     ADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEAD
                     TLGSCGYVYLAVYPTPAPATTS"
     gene            18317..18691
                     /locus_tag="OQQ72_001660"
     CDS             18317..18691
                     /locus_tag="OQQ72_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin"
                     /protein_id="HCS2011432.1"
                     /translation="MKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFV
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKYPEAK"
     gene            18688..19179
                     /locus_tag="OQQ72_001661"
     CDS             18688..19179
                     /locus_tag="OQQ72_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309434.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011433.1"
                     /translation="MMKLALTLEADSVNVQALNIGRIVVDVDGIELAELINMVCDNGY
                     SLRVVDESDQTSAECTPPFATLTGIRCSTAHITETDNAWLYSLSHQTSDFGESEWIHF
                     TGSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAECLPGLPT
                     FDW"
     gene            19191..19388
                     /locus_tag="OQQ72_001662"
     CDS             19191..19388
                     /locus_tag="OQQ72_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011434.1"
                     /translation="MKSLTTETALDILIAWLQDNIDCGSGIIFDNDEDKTDSAALLPC
                     IEQAREDVRTLRHLQLLHQNR"
     gene            19473..20033
                     /locus_tag="OQQ72_001663"
                     /pseudo
     CDS             19473..20033
                     /locus_tag="OQQ72_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            20105..21109
                     /locus_tag="OQQ72_001664"
     CDS             20105..21109
                     /locus_tag="OQQ72_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSfl8 family transposase"
                     /protein_id="HCS2011435.1"
                     /translation="MQNITLIGIDLGKHSFHIHCQDKSGKALLRKKFTRTKLMQFLAT
                     CPPSVVVMEACAGAHFMARCISDFGHETKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTETQQAMRALHRVRESLIRDKVKTTNQIHGFLLEFGISLPIGDAVIKR
                     LSLVLAEHEIPEYLSRLLVRLHTHYFYLVEQIAELESELSQSINADDTAQRIMTIPGV
                     GPITASLLSSQLGDGKQFSCSRDFAASTGLVPRQYSTGGKSTLLGISKRGDKNLRRLL
                     VQCARSFIMRLERKHGKLAEWVREQLNKKHSNVVTCALANKLARIAWAITTQKKEYQA
                     "
     gene            21391..21672
                     /locus_tag="OQQ72_001665"
                     /pseudo
     CDS             21391..21672
                     /locus_tag="OQQ72_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309436.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
     gene            complement(21822..21909)
                     /locus_tag="OQQ72_001666"
     tRNA            complement(21822..21909)
                     /locus_tag="OQQ72_001666"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21873..21875),aa:Ser,seq:gga)
     gene            22143..23081
                     /gene="ghrA"
                     /locus_tag="OQQ72_001667"
     CDS             22143..23081
                     /gene="ghrA"
                     /locus_tag="OQQ72_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HCS2011436.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
     gene            23136..23873
                     /gene="ycdX"
                     /locus_tag="OQQ72_001668"
     CDS             23136..23873
                     /gene="ycdX"
                     /locus_tag="OQQ72_001668"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding phosphatase"
                     /protein_id="HCS2011437.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            23897..24451
                     /gene="ycdY"
                     /locus_tag="OQQ72_001669"
     CDS             23897..24451
                     /gene="ycdY"
                     /locus_tag="OQQ72_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone YcdY"
                     /protein_id="HCS2011438.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWMEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            24553..25044
                     /locus_tag="OQQ72_001670"
     CDS             24553..25044
                     /locus_tag="OQQ72_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HCS2011439.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(25108..25789)
                     /gene="csgG"
                     /locus_tag="OQQ72_001671"
                     /pseudo
     CDS             complement(25108..25789)
                     /gene="csgG"
                     /locus_tag="OQQ72_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
BASE COUNT         6229 a         6691 c         6704 g         6165 t
ORIGIN      
        1 gggatatggc cctgcctttc cagcaatcgt cgattgttat accagtccac ccacgtgagt
       61 gtggtcagct catcatactg acacgtgcat tacccctacc gcgataatgc aaccgtacaa
      121 tatagggcgt ttcctaaacg cagccctcat cactccaatc caacaagaca cagcattttt
      181 gatcacgaag aaagacaaat aatttccgta aatgtttccg ttgttacaaa taacaacagt
      241 gttttacatt tctttggcct caggcccgcg catgttgcca ttcgatgtca ttttcctgac
      301 tcgtttcttc tttatggtgt agtgtgatct tcactttata gatgctaaca atatgaaaag
      361 aaaaattatt cccgtgctaa tcggttgtac gctctctttc tctgccctgg cggcacaacc
      421 tacggctgag cgctatgtcg tcagttttcc agaaggcacg cacgtgaact acgccggcgc
      481 atttgccagt gcattcccga acggccttcc ggttgggata ggttctggcc tgctgttcac
      541 cggtaaacag ggcgatgccc tgacattcgc aaccattacc gatcgcggtc cgaacgcgga
      601 ttcaccgaaa gaggggaaaa acgaaactaa aattttcgtt acgccagatt tcgcgccgct
      661 gctgatgacg attcgtgtac aaaacggcaa agcggaggcc atcgatcccc gtcctctgca
      721 tgacgataaa ggcgcgatca acggtctgcc gctggcaagc gacgtgattg gctccaccaa
      781 tgaagtggcc ttcagcgaca cgttacatag actgaagggg gataatcgcg ggctggatac
      841 ggaagggatc actccggatg gtaaaggagg ttactggctg tgcgatgagt atggcccgtt
      901 cctgattaac atcgacagta aagggaaaat cctggcaatc cacggtccgc aggcggcgga
      961 aggggaaaaa gcgattgcgg gcggtttgcc aaatatcctc aaatggcgtc aggcgaaccg
     1021 cggctttgaa ggcctcaccc gtatgccgga cgggcgtatt attgtcgccg tgcaaagtac
     1081 gctggatatc gacgctaaga gcaagaaaaa ggcgctgttt acgcgtctgg tgagcttcga
     1141 tccggcaagc ggaaaaaccg cgatgtacgg ttatcctatc gacagcgcgg cctacagcaa
     1201 aaacagcgac gctaaaatcg gagacatcgt ggcgctcgat aaccagcaca tcctgctgat
     1261 cgaacaggga agagataaaa acaacagaat gcgtaacctg atttacgagg tcgatctcaa
     1321 taaggcgagc gacctgtcag gcttcgacaa gccgggtgag tatccggagt ttgatgatga
     1381 gaaaaccctg tcacagcgcg gcattaccct tgcgcagaaa acgcaggttg ttgatctgcg
     1441 ctccttgggc tggcagcagg agaaggctga agggttggcg ctgatcgaca gcaaaacgct
     1501 ggcggtggcg aacgataacg actttggcgt gaaggtggcg atgcaacatc cggtcgaggg
     1561 caagacattc aaggattatc gggtgaacgc ggaaggaaag ctgacgcttg acgacaagca
     1621 ggttgaaacg accctcagag tgaagccact ggagaaaccg gagtctgaca gtgaactgtg
     1681 gattgtgacg ctgccggaag cgttgaaata agtttataag gtacggacag cagtatcgct
     1741 tagtttttca aattcatgta tgtgaacaat attggggttc cggcgtagac ccccaatgaa
     1801 agcgtcacca cgtgaaaaca tgcctgcacg gtttacacgt catcccatgg tggcagccgg
     1861 ttaactttcc tgcgccacca gtggaaaaag gccataagca gtccgaacaa aagtaagcgt
     1921 acagcgaggg ccgtattgac ggggatgtgt tattcagctg gcagtgctat gcgccacgga
     1981 agcagttcgc tgacccggtt gaccggccag tctgctatga cgccaagcac atggcgaagg
     2041 tagctttctg gatccacgtc attcagtttg cacgtcccga tcaggctgta cagtagcgct
     2101 ccccgctcac caccatggcc agagccgaag aacagggtct tcatcttttc acgcaaccag
     2161 ctttccaggg atttcaacag cggtttcgtt tttcgctgac gttcagcaag ccgctgctct
     2221 gccggcattc cccttatatc cgcctctatg gcgtacaact gaccgatctg ctccagggct
     2281 tcttccgtca gtgctgacgg gatgcggacg tgcacatcgt ggatctttcg gcgggcatga
     2341 gcccagcagg cagcttccgt tatcccacca ttgcgataca gctcgttgaa cccggcgtac
     2401 gcatccgctt gcagcacacc gctgaagcaa gcaagatgag tctgcggatg gatgcttttt
     2461 ctgtccgggc tgtaagcgaa ccacactgca ggtgccaacg ctgacccggc attgcggtca
     2521 tcacgaacat acgcccacaa ccgcccggtc ttcgtcttct tattacccgg cagcagtacc
     2581 tggaccgggg tatcatcggc atggagtttg ccgtcagtca tgacatagcc atgaagcgcc
     2641 tcttccagcg gagacagcag ccggcagcat gcatccaccc agcccgacag cagtgaacgg
     2701 ctcagctcca caccttgccg gccgtatatt tctgactggc aatacagcgg ggtgtgctct
     2761 gcatacttcg aggtcagcac gcgggccagc agccccggtc cggcgatacc ccgctcgatg
     2821 ggccgcgaag gtgcaggtgc ctgcacgatg gtatcgcact gagtacaggc atgtttttcc
     2881 cgtaccgtcc ggataacccg gaaggcgcta cgcatcaact ccagctgttc ggcggtatcc
     2941 tcgcccagat agctcagtga accgccgcag ttcgggcagc acggcgccgc aggcaacagt
     3001 cgcttttcgt cacggggtag tgattcaggg aacggcttac gggtgcgggt ctgacgcaac
     3061 ggacgctgta ctgccgggtc atacacccta ccagtcagcg tatcgctctc tttctgaagc
     3121 cggttcagat cggcttccat ttgtgcgata cggcgggaga ctttttcgga acgactgccg
     3181 aagttcatcc ggcggagttt atccagctgc gcctgcagat ggtctatttc gcgctcccgg
     3241 ttgctcagct tttcctgcag ggcgtggatc agcgcttcct gttcggccag gcgctgtttc
     3301 agcaggaaga tgtcgtcaga agagatgtcg ttcataagcc cgtattttac cgggcttatt
     3361 ctgtgacaac caggataaag agatttacag catggtcagg gaggtcagca gccgcttggg
     3421 ctgtcgccag tcgatacctt ccagcagcat cgccagctgc gcctgcgtaa ggaacacttt
     3481 gccatcacgg gctgacggcc aggcgaagcg cccacgctcc agccgtttgg tcaggaggca
     3541 cagtccgtcg ccggtggacc acagcagttt aacctgactg ccgctgcggc cccggaaaat
     3601 gaaaatatgg ccggacatgg gatcgtcttt cagcgccgtt tgtactttcg cagccaggcc
     3661 gttgaagcta tttctcatat cggtgatacc ggcaaccagc caaattttgg tcccggaagg
     3721 taacgggatc atcgcttcag ttcctgtatc agcagagtca ggagcttttc gctgacattg
     3781 ccattgaagc ggagcgtccc gtgccggaac gttacctcac agctgatact gagggtttcc
     3841 gggtcctctg cgagcgattc tggctgttcg gcagctgcat cgagagtcac aggaagtagc
     3901 tgggggctct ctgaagaagg taatagcagc tttccctcgc gccattgttg tcgccatttg
     3961 aacaacagat tggcgttaat gccattttca agagcaagtt ttgagatgga tatcccgggt
     4021 tcacaggagg cagcaacgag cagctgttta aattcgggag gataattagg gcagcctttt
     4081 cgcctgccgg gagtcacatt tttctgcata tctgacactt tggttcccac tacttatttg
     4141 gtggacacca ctttgtctaa ttcgtcagat tctgaccaga cggttcaggc tgtacgctta
     4201 ccactatttt atccctgttg aatttggtta agccggtgca gacgcgccgg gaaacgcaca
     4261 cctgaaccgg cacaataaaa tacaatacaa ccccctgtta ctggagatac gaatggaatg
     4321 acgaggcagc ctgtcagtca cagggggctg ttggcataaa atcaacggaa aggccaccaa
     4381 caccggaatt aagctccaca gtccccgcac tggcaatcca ttcccgggaa aggcatcacc
     4441 gcaaactgct ccggaggcaa ccattacagc ctctgtaacg gattatcagc cctggcatct
     4501 tccgacggca cctcctgccg cccccacgcc ctgctgtata ccccggtacc gcagcgtggg
     4561 cagcactttt ccccctcata atcttcgtca cacatcacac aaaaccactt tctcaccttc
     4621 accgtataat ccggaaccgt catgccctgc agatgcaaac gacgggcctc tttctctgcc
     4681 gggtcaagcc aggtacatcg cagcaggatt ttttcagcga cagtcatctg gtcatgttca
     4741 aaccacggtg gttgtccgtc attgccccgc tgaagtgtta acgggcatcc acaggacaca
     4801 cagcacaaaa cgtcctgtcg gttgtgcttc gcagcttctt tcgccgtaac aaaatggcct
     4861 ttgctgtcat tcgccatata acagttcaga attcgcatat ttcctcctga gttgtccggg
     4921 gaatactgaa tcctccggtc tggcagtgtg tgcagtactg ctccccataa taatcgtggt
     4981 gacattgtct gcagtgccag ctggctttac gcaccacggg taaggcatcc ggtacgaatt
     5041 gctgcagacg tttaatcaac tgtatttctc tgcgctccgg cctgacataa gggcactgtt
     5101 gaccgtgctc tgtcagcctg tcgtcagtgt gttcaaacca gggaagttca gtttcgtatt
     5161 gcggatggta tctgagtgca ctgccacaca agtggcaggt gtagttagca taaggtgcgg
     5221 cctgtgcagt acgggcgccc gtcagacgtc cgttgccatc aagagcgata aaggattttg
     5281 cgtacatagt catatacctc agccgccaga cgacacgcag gcaacagccg tcccggtacg
     5341 ggcagcgtgg tcagggtgtg aatggcggtt cagttaaaat ctggactgga gtttgggtaa
     5401 agcaggctgg ttgctgttac agcactgtgg ttgtcacaca atggaacact gacgtaaaaa
     5461 acagtcagtg ggcgagtgga tacatcgttg ccgccagaca acaacccata cttttggttt
     5521 gccggatatt ggcgcgccag tcgtgctcaa ctccggctac agccaaaatt gcgctcaccg
     5581 gtgcagtgag ctttggtatg ctccttcgcc agatagtcag cacgttccag cacttgctga
     5641 aagccggtgt catcattacg cgccagccac accgccggcc aggccggaaa atgcaccagc
     5701 gtggcatggc acccgacatc cactcccagg gcactgcacc acgcctgttt aatcatcccg
     5761 gccagagact ccggagcgcg gtaatcaccg gcacgacacc aggtatcccg gttgaccagc
     5821 agcatcaggt gatagtgttt tttacctttg cactccccaa actcccgggc ccagacgtaa
     5881 tgcagggttg tgggatgcac gcgtttacct tcccgatgct tacgtttctg gtaagcgtcg
     5941 attcgggctt tcagggcatt gatgaagcgg gatatcacag ctgcgtccgt tgctgccggt
     6001 acatccggga gacgcaggtc aacccgcaat gccgtcaggc ggggatgaac attcagtgcg
     6061 tgccgcaccg tctcacgaat acgttgctgc cagaaggggt tgtatttgta ggtcatggtt
     6121 aaatctccgt atggttcata cggaatagcc acgtcgtaaa aaatacgcag agtccctgaa
     6181 gtgacctccg gcaggacact gtctcaggca ctctgtgata acccgaacgg tcgtctccgg
     6241 actgacggtt gaattttcag cgtcgttttt taatgtaaaa aaccggttac gggtaaggct
     6301 gtgaggaggg agtgatggtg atacgcaaaa agaagtgcag ggactgtgga aacgcgatta
     6361 ctcataatac agtgtgttgc ccgtattgtg gttctgtcga ccccttcggc tactaccgga
     6421 atacagaccg tatcgttacc atactgctgg cgctgattat tgtggtcctg ctgactactg
     6481 tcagcgtcag tgtgtgtata ctgtgtagct ggtgagataa cggttcatgt atcccctgag
     6541 ctgacagtgt accgtgtata ttaagcgtaa ccgacaggtt ctccttcata ccatattaaa
     6601 ttttccaggg attgccgctg ccttatttcg tcccatacag gaaaactcat ctgggtttct
     6661 gacaaatacg cgaaactcac agcccctcaa tatcaaccac acgttgtaag ccggtaatac
     6721 ctgaaaatca gcctattacc gcccacgcct ccggcaccat tcccttttga tttcgaattc
     6781 tttgttgtcg ctataccgct taatgttccc ggtcctccgg tgcagataac accggagtca
     6841 tcgtagcgct gcttcaatat tcaggtgacg tatttccaga cggaagccgg cgcgcgatcg
     6901 taaagtttgt tcattgtcag ttctgccagc cggttgtcaa cggcagagtt aaaggcttcc
     6961 agctccgcaa gggtaagttt ataacgcgtg tgggaattca cttttcccgc gtctcctgac
     7021 gtattacggg ctgccactta cctggtgtcc cgcaatacag ccttagtgtt ccgttatcgg
     7081 ggatccggac gcaccgcaac aaccggggaa gtatttctgg tttagagcag tgtcaagagg
     7141 gatttctcag cccctcactc accggctcag tctcagggca ggagcattaa tacgctcagt
     7201 tcatgtctta tacaggaatg ggcacagggg gagctggcgt gtcactgctg attttacgca
     7261 tcagcgttca tgtatctgca ctctgataca tgaacgattc acagcgctct gttaccggag
     7321 agatttactc tcttagctta ctctggcaaa tcctttacgt tactctctga tgacttctta
     7381 tatttataat accaatcaga cagccttatc ccatcggtga tatcagtctc ctcctcgcca
     7441 ggaacgggct gactcactgt aactacctcc gaaaacaact ctgcaattat cagaacgcct
     7501 gcttctctcc ctgtcctcac gaaaactatc ccctctttat cgcgcgtgcg tgcggaagca
     7561 tcttttcgca acaaccaccc ggtataccgg tacggctcag ccaccgcaac ctccccgttt
     7621 atctcctggc ggtcacattc ccgattattt tttacgtttc tccccggttg ttatgccggt
     7681 gaaggtggcg cgctgttttc atgaccacac cggctggttt aacaacatcc ggaggaacat
     7741 tctcatggct accccagttt cactgatgga tgaccagatg gtcgacatgg catttatcac
     7801 tcaactgacc ggcctgacag ataagtggtt ttacaggctc atcagggatg gggcctttcc
     7861 ggctcccatc aagctgggcc gcagctcccg ctggctgaaa agtgaagtgg aagcctggct
     7921 acaggcgcgt attgcacagc cccgcccgta atttctgacc gttatccgtt cacccgcagc
     7981 agacgtaatc cccggcctgc cggcggcatt ctgctgcctg ttatatcccc gtgaggaata
     8041 tgaaaatgaa acaacagtat cagacccgct acgaatggct ccacgaaagc taccagaaat
     8101 ggctgaccgg cttcacccgg cacgccgtat cctggggcgt gtgtcatccg aatatctact
     8161 acttccataa tctgacgccc ggttgggtgt cattcaatgg tgaaaaaccg gagattgcca
     8221 tcgtacccca gagcctgcac cggctgattt atggccctga caaacgggcc acgccgcccc
     8281 tggatgatga tctgatagtg aatttatgca ccagtgaaca tctgctggtt catcatccga
     8341 tgctggaagg cattctcctg tctgaatgtg aacgtctgag gcagcgttct ctggcaaata
     8401 aactgatcag cctcttccgt cagtttggtg gcacggagtt gcgcctcaaa ctggtctggc
     8461 tttgctggct tgatttaatg accggaaaca gccttgaaga ctggaaagag aacctgaaac
     8521 ggaaatcaga aaaagagctg gaggaatgga tcatcaaccg tcagaggcag agcgcagcac
     8581 tgacggatct gatggatcag tacgtgctcc tggcataccg cacaacggtt gacgatagcc
     8641 gcaactgatg ccggttgctt ccggaaggtg tgacaaaata cggaaatgat gatgctcccg
     8701 gcccccatgc tcacctgcag agcgtgttcg tcgtcatcat actgagccat gacgggcgtc
     8761 ttaagggcat cctgtcattg ctgagcaggc aacaccacca gaggagccac ggacagggat
     8821 gttctttaca gcccgataca cgccaggttc tcagcagact gaatgtgcag gtgcggttat
     8881 tcaccagaaa tggcatgctg cggtacatac ccatcctggt gacaatatgt acgtggcgac
     8941 agcgatcccg gcactgtgga agagactcac tcagcctgca ggatattctt tccggcatcc
     9001 gggaatgtcc gcctgaatgc aaacaggatg atatttgaat ccgtaatact gttctttcat
     9061 cataaataat ttatgcagat acagttaacc gttacagtag ccggtttgtt ttaccgggaa
     9121 ataatatccg tcagactgat accggaacat atctgaaaca cgttatgatg ttttgttatc
     9181 agaaatgttg tatattctta tccgtggcga cagtttaatg ccctctggta tcacctgata
     9241 atgtatatcc tgcgatgatt cgttatattt acgggacacg cctcttttca ttgtgctcct
     9301 tttcagactt cattttccgt aagtgttccc cggcataaag gaggtacctt tctggcgttt
     9361 ataactctct ttatcggtga cgccggtaat acagggaata ccacaccgac aaacgaggta
     9421 ttaacagacg atatttcagt gtccataatt tttctgtccg gttaaataac gtcagtctgc
     9481 tgccctctga ctgtaatcat caaagccgga atgcataccg ggttacaacg taaaaaaagt
     9541 gatgctggcc cccggtgcag ctggcgggcg aaacatgttt acctttcaat accccctgtc
     9601 tgcagtctcc actcttccat cctcttaagc tacgtcggcc acatgagtgc acttccatga
     9661 taacaggtat tcctgtcagc ataacgaagc cggttacctt cccttcctcc tgcatttcct
     9721 gtcagaatga ctatacagcg cgcagattgc ctttttattg accatcttaa tataccgtta
     9781 taaacttctt tttatcatat tattatcacc ttattatgtt taatttttaa gcagtcggag
     9841 aaagaggatg gttcagaaaa ttttgtcgga taaggttatg aatgaaagaa caaatgcgta
     9901 ttactcttat tatcttggag agcgtaatat ctccgtactg ccccttaatg tttatgatcc
     9961 cccggaacgt tttatcgctt acataaaaaa aaacagagaa aatctgaaca tcacactttc
    10021 agattttgaa cttgaacaaa taatttctgg tatgcgtctg aaggccctgg ccttcctggt
    10081 ccccctggaa aaaatatcct ggatcgcggg cagtgaacgc gcatgcttat tttcctggta
    10141 tctgttgatg cagtttatcc agaataacag ggcaaaaata agcgcagact tgcttcaaaa
    10201 gaataaactg tatcttaaag aagagtatct ggaagggaat gccttcccgt cggactcatc
    10261 gacacagttc agacaaatac tcagagttct cgatattctt tctgataaga atttgcggga
    10321 tgagtggata atccagacca aagacagatg gatgcgggca tttaaatcaa agagtccttt
    10381 cagttacctc ctcccggaga acgaacatga atgcatatgg acatggaatt atttgaaggg
    10441 aaaaaatatt gcactggaaa aactggccag ttttcctggt tctgctgata tttaccacgc
    10501 aattcacctt tcatttgaca tatgggttac ctgtccactc acctcacctg acgatataaa
    10561 aaatttcaga aacagtttca ataaggccaa ggcgcagcgc aagtacaaaa aaatgcagga
    10621 agataaagtc aatgtacagt tttttcttga cgcagaaacc agggcgcagc tcaaagaatt
    10681 atcgagggtc agaagactca gtaccggcga aatgctgcat gacctgattg ttgaagagta
    10741 taaaaggtac cgacattcca gataatttca gacatatatt atctccgtga gtcccccgcc
    10801 acctttccgg tgtgcggggg ttttgtcttt tttcaccggg aatacatgta tgaatccgtc
    10861 tgatgccatt gaggcaattg aaaaaccgct ctcctccctg ccttactcac tttcccgtca
    10921 catcctggaa catctgcgca aactcaccag tcacgaaccc gtgattggca ttatgggtaa
    10981 aagcggggcc ggtaaatcct cactctgtaa tgcactgttt cagggggagg tcactccggt
    11041 cagtgatgtt cacgccggca cccgggaagt gcagcgtttc cgtctgagtg gccatggtca
    11101 cagcatggtt atcactgacc tgcccggggt gggcgagagc cgggacagag atgcagagta
    11161 tgaagccctg taccgtgaca ttctgcctga acttgacctg gtactgtggc tgattaaagc
    11221 cgatgaccgt gccctgtctg tggatgagta tttctggcga cacatcctgc accggggaca
    11281 tcagcaggtg ctgtttgtgg tgacgcaggc cgacaaaacg gagccctgcc atgaatggga
    11341 tatggccggt attcagcctt ctcccgcaca ggcacagaat attcgcgaaa aaacggaggc
    11401 ggtattccgt ctgttccggc ccgtacatcc ggttgttgcc gtatcggccc gcaccggctg
    11461 ggaactggat acgctggtca gtgcgctaat gacagcactt cccgaccatg ccgccagtcc
    11521 cctgatgacc cgcctgcagg acgagctgcg cacggaatct gtccggggtc aggcccgtga
    11581 acagtttacc ggtgcggtgg accggatatt tgacacggcg gagagcgtct gtgttgcctc
    11641 tgttgcccgt acggttctgc gtgccgtccg tgacacggtg gtctctgttg cccgcgctgt
    11701 atggaactgg attttcttct gaacagtctg ccagggaaat gcctgataac attacgttaa
    11761 ccaactgaaa acatgacaca aacccctcat actcctcctg tttctcttgc gtgaccgcct
    11821 tgtcgttaat agaataaaac tatcgataaa acagatatcg atcgttgcta tcgatcgttt
    11881 atagtggtta atggtctgcg aaaaggcagc tgaatctctt catcatgcag aacggaattg
    11941 cacacaacgg actgatactt ctctggcgga tgagagaggg gaagcattta tgtccgggaa
    12001 aaaccacttt atctgaccat gctgttttgt acctgccggt atccactttt gtgggtaccg
    12061 gcttttttat tcaccctctg taaggaaaag ctgatgaaac gacatctgaa caccagctac
    12121 aggctggtat ggaatcacat tacgggcacc ctggtggtgg cttccgaact ggcccgctca
    12181 cggggaaaac gcgccggtgt ggcggttgtg ctgtctcttg ctgctgtcac atcagtcccg
    12241 gcactggctg ctgacacgat tgtacaggcg ggagaaaccg tgaacggcgg aacactgaca
    12301 aatcatgaca accagattgt tctcggtacg gccaacggaa tgaccatcag tagcggtctg
    12361 gagtatgggc cggataacga ggccaatacc ggcgggcaat ggatacaaaa tggcggtatc
    12421 gccaacaaca ctactgtcac cggtggtggt cttcagagag tgaatgccgg aggaagcgtt
    12481 tcagacacgg ttatcagtgc cggaggcgga cagagccttc aggggcaggc agtgaatacc
    12541 actctgaacg gcggtgagca gtgggtacat gaaggcggga ttgcaacggg taccgtcatt
    12601 aatgagaagg gctggcagac cgtcaaatcc ggcgcaatgg caaccgacac ggttgtgaat
    12661 accggcgcgg aagggggacc agatgcagaa aatggtgata ccgggcagtt tgttcgcgga
    12721 aatgccgtac gtaccactat caatgaaaat ggtcgtcaga ttgtggctgc tgaaggaaca
    12781 gcaaatacca ctgtggttta tgccggcggc gaccagacgg tacacgggca tgcgctggat
    12841 accacactga atggcggtta ccagtatgtg cacaacggcg gtacggcgtc tggcactgtt
    12901 gtaaacagtg acggctggca gattatcaag gaaggtggtc tggcggattt caccaccgtt
    12961 aaccagaaag gcaaactgca ggtgaacgcc ggtggtaccg ccacacatgt caccctgaaa
    13021 cagggtggag cactggttac cagtactgcg gcaacggttc ttggcagcaa ccgtctgggc
    13081 aatttcacgg tggaaaacgg taaggctgac ggagttgttc tggagtccgg cggtcgcctg
    13141 gatgtactgg aaggccattc agcgcagaaa acacgggtgg atgacggcgg aaccctggca
    13201 gtgtctgccg gtggtaaggc aacaggtgtc accatgacat ccggtggtgc cctgattgca
    13261 gacagtggtg ccactgttga ggggaccaat gccagcggta agttcagtat tgatggcaca
    13321 tccggtcagg ccagcggact gctgctggaa aatggcggca gctttacggt taatgccgga
    13381 ggactggcca gcaacaccac tgtcggacat cgtggaacac tgacgctggc tgccggggga
    13441 agtctgagtg gcagaacaca gctcagtaaa ggtgccagca tggtactgaa tggcgatgtg
    13501 gtcagtaccg gcgatattgt taacgcaggg gagattcgct ttgataatca gacgacaccg
    13561 gatgccgcgc tgagccgtgc tgttgcaaaa ggcgactccc cggtaacgtt ccataaactg
    13621 accaccagta acctcaccgg tcagggtggc accatcaata tgcgtgttcg ccttgatggc
    13681 agcaatacct ctgaccagct ggtgattaat ggtggtcagg caaccggcaa aacctggctt
    13741 gcgtttacaa atgtcggaaa cagtaacctc ggggtggcaa cctccggaca gggtatccgg
    13801 gttgtggatg cacagaatgg cgccaccaca gaagaaggtg cgtttgccct gagtcgcccg
    13861 cttcaggccg gcgcctttaa ctacaccctg aaccgtgaca gcgatgaaga ctggtacctg
    13921 cgcagtgaaa atgcttatcg tgctgaagtc cccctgtata catccatgct gacacaggca
    13981 atggactatg accggattct ggcaggctcc cgcagccatc agaccggtgt aaacggtgaa
    14041 aataacagcg tccgtctcag cattcagggc ggtcatctcg gtcacgataa caacggcggt
    14101 attgcccgtg gagccacgcc ggaaagcagc ggcagctatg gcttcgtccg tctggagggt
    14161 gacctgctga gaacagaggt tgccggtatg tctctgacga caggggtgta tggtgccgca
    14221 ggccattctt ccgttgatgt taaggatgat gacggttccc gcgccggcac ggtccgggat
    14281 gatgccggca gcctgggcgg atacctgaat ctgacacaca cgtcctccgg cctgtgggct
    14341 gacattgtgg cacagggaac ccgccacagc atgaaagcgt catcggacaa taacgacttc
    14401 cgtgcccggg gctggggctg gctgggctca ctggaaaccg gtctgccctt cagtatcact
    14461 gacaacctga tgctggagcc acaactgcac tatacctggc agggacttac cctggatgac
    14521 ggccaggata acgccggtta tgtgaagttc gggcatggca gtgcacaaca tgtgcgtgcc
    14581 ggtttccgtc tgggcagcca caacgatatg agctttggtg aaggcacctc atcccgtgac
    14641 actctgcgcg acagtacaaa acaccgtgtg agtgaactgc cggtgaactg gtgggtacag
    14701 ccttctgtta tccgcacttt cagctcccgg ggtgacatga gcatggggac agccgccgcc
    14761 ggcagtaaca tgacgttctc accgtcccgg aatggcacgt cactggacct gcaggccgga
    14821 ctggaagccc gtgtccggga aaatatcacc ctgggcgttc aggccggtta tgcccacagc
    14881 gtcagcggca gcagcgctga aggttataac ggtcaggcca cgctgaatgt gactttttga
    14941 taatcaggtc actctccttc aggccccggt catcatgacc ggggcttttt actttcaggg
    15001 agcaacagat atgccgggtt gtacatcacg tttattgccc gaaggccctt tctcacgcga
    15061 acaggctgtt gccgtcaaaa cagcttaccg caatgtgttt actgaagatg accagggaac
    15121 atattcccgg ctggttatcc gtaatgctga aggtcagttg cgctggtgat gccggaacac
    15181 agcttaatac tcagctcgcc agttaagggc ttctcagaca ataaacgtca ttcatttcat
    15241 ctgtcaggcc gcgtcttctc cgggagacgc agctttttca tttattacac cagtaaatcg
    15301 taaccaccga taaggagcaa attatgcgac tagccagtcg ttttggttat gcgaaccaga
    15361 tacgccgtga ccgtccgctg acacacgaag aactgatgca ctatgttccc agtattttcg
    15421 gtgaagaccg gcatacttcc cgcagtaaac gatatgcgta cattcccacc atcaccgtac
    15481 tggaaagcct gcagcaggaa ggttttcagc cattcttcgc ctgccagacc cgcgtgcgcg
    15541 acccgggccg ccggggatac acaaaacaca tgctgcgtct gcggcgggcc ggagagataa
    15601 acggagaaca tgtccctgaa attattctgc tcaactctca tgacggtacc tccagctacc
    15661 agatgctgcc gggttacttc agattcgtct gccagaatgg ctgcgtctgc ggtcagtctc
    15721 tgggggaagt gcgtgttcca caccggggaa atgtggtgga gaaagttatc gaaggggctt
    15781 acgaagtggt gggggttttt gaccggattg aggaaaagcg tgatgccatg cagtcgctgg
    15841 tcctgccgcc accggcacgc caggcgctgg cacaggcggc actgacttac cgttatggtg
    15901 acgaacatca gccagtcacc accgctgaca ttctgacacc acgacgcagg gaggattacg
    15961 gtaaagacct gtggagcgca tatcagacca tccaggagaa tatgctgaaa ggcgggattt
    16021 ccggccgcag tgcaaaagga aaacgtatcc acacccgtgc cattcacaac atcgacaccg
    16081 atattaagct caaccgcgca ttgtgggtaa tggcagaaac gctgctggag agcctgcgct
    16141 gatgcagcat gtccctgaag gcgtgattca ggcaccagaa tcacccgacg ccccggaggc
    16201 gctgccgggg tgtcgttcca tttctgatga tgacctgtgc gcctggtgta cccgtctgct
    16261 ttaccgtccc ggagaaatca gtctgtgcag actgagtata caggcaatgg catctggcca
    16321 tccgtctgtg accggaacgg ttacgcgtac ggctgtccgg aatttcagcc gaatatcatt
    16381 catccctgat attaccgggt catcacggtc agtgatgaac gtgatgttgc cagctcccga
    16441 cctttactcc ctctcattta ttcacattac aaggatttca tacatgaaaa cattgtctca
    16501 gaacaccacc gcttcggcct gtgcaccgga gactggcctg caacaactgg ttgccactcc
    16561 cgtccctgat gaacagcgca tcagcttctg gccgcagcat tttggcctca ttccacagtg
    16621 ggtcaccctg gaaccccgtg tcttcggctg gatggaccgt ctgtgtgaag actactgcgg
    16681 tggtatctgg aatctgtaca ccctgaacaa cggcggggca tttatggcac ccgaaccgga
    16741 tgacgatgat gacgaaacat gggtactgtt caatgccatg aacggtaacc gcgctgaaat
    16801 gagcccggaa gccgccggca ttgctgcctg tctgatgacg tacagtcatc atgcctgtcg
    16861 tacggagtgt tatgccatga cggtccatta ttaccggctg cgggattacg ccctgcagca
    16921 tccggaatgc agcgccatta tgcgcatcat cgactgaatg gaggcaggga caatgcagca
    16981 gctttccttt ctgcccggaa acatgacgcc cggcgagcgc agtctcattc tgcgggccct
    17041 gcaaaccctg gaccgccatc ttcatgaacc cggcgtggcc ttcacctcca cccgtgcggc
    17101 acgggaatgg ctgattctga acatggcggg actggagcgg gaagagttcc gggtgctgta
    17161 tctgaacaac cagaatcagc tgattgccgg tgaaaccctc ttcaccggca ccatcaaccg
    17221 tacggaagtt catccccggg aagtgattaa acgcgccctg taccacaatg ccgctgccgt
    17281 ggtgctggcg cacaatcacc cgtccggtga agtcacaccc agtaaggcag accggcttat
    17341 caccgaacgt ctggtacagg cactgggcct ggtggatatc cgggtgccgg accatctgat
    17401 agtcggtggc aaccaggttt tctcctttgc cgaacatggt ctgctttaac ccgtcacaac
    17461 cacatcacac ctgttttcac ttttatcttc tgtcttcaga ggtatcacat catgagaatc
    17521 atcacccgtg gtgaagccat gcgtattcac caacagcatc ctgcatcccg tctttttccg
    17581 ttctgtaccg gtaagtatcg ctggcacggc agtgctgaag cgtatactgg tcgtgaagtg
    17641 caggatattc ccggcgttct tgccgtgttt gcagaacgcc gtaaggacag ttttggcccg
    17701 tatgtccggc tgatgagtgt caccctgaac tgatgttccg tcacccggga aacgagtacg
    17761 accagatgac ctcagacgcc gctgtggatg aggccattct catcaatgca tacatcttca
    17821 ccgaaaccgg tcagcgcgcc ggctgacctg tcatcgttaa accattctta accacttttc
    17881 agagaggatt ttatcgtgtc agacaaactc tccgggataa ctcatcccga tgacaatcac
    17941 gaccgcccct ggtgggggct tccctgcaca gtgaggccct gttttggcgc tcgtctggtg
    18001 caagagggta accgcctgta ttaccttgcc gaccgcgccg gtatcagagg ccgcttcagc
    18061 gacgcagatg cataccatct ggaccaggcc tttccgctgc tgatgaaaca actggaactc
    18121 atgctcacca gcggtgaact gaatccccga tatcagcata ccgtcacgct gtatgcaaaa
    18181 gggctgacct gcgaagccga caccctcggc tcctgtggtt acgtttatct ggctgtttat
    18241 ccgacaccag cacccgcaac cacctcataa ccccgaagct ctcaccttta gcactaccag
    18301 ttacagagaa cttaagatga aaacattatc cgacacacat gtacgggagg tatctcgctg
    18361 cccgtctccc gtcaccatct ggcagacact gctcatccga ctgctggacc agcattatgg
    18421 cctcacactg aatgacacac cgtttgtcga tgaacgtgtg attgagcagc atattgaggc
    18481 aggcatttca ctgtgtgatg cagttaattt tctcgtggaa aaatacgcgc tggtgcgtac
    18541 cgaccagccg ggattcagca cctgtccccg ctctcagtta ataaacagta ttgatatcct
    18601 ccgggctcgc cgggcgaccg gcctgatgac ccgcgacaat tacagaacgg taaataacat
    18661 taccctgggt aagtatccgg aggcgaaatg atgaaactgg ccctgacact ggaagccgac
    18721 agcgttaacg tacaggcact gaacataggg cgcattgtcg ttgacgtcga tggtattgag
    18781 ctcgctgaac tgattaacat ggtctgcgat aacggctact cccttcgtgt tgttgatgaa
    18841 tctgaccaga cctcagcaga atgcacgcca ccatttgcta cccttaccgg catacgctgc
    18901 agtaccgcac atatcacgga aacggacaac gcctggttgt actcgctgtc acaccagacc
    18961 agtgacttcg gtgaatcaga atggattcat tttacaggta gcggatatct gttacgtacc
    19021 gatgcgtggt catacccggt tctgcggctt aaacgcctgg ggctgtcaaa aacgttccgt
    19081 cgtctggtcg tcacactcat ccggcgttat ggcgtcagtc tcattcatct ggatgccagc
    19141 gctgaatgcc tgccgggttt acccactttc gactggtaac caggaacaac atgaaatcat
    19201 taaccacgga aacagcgctg gatattctga ttgcgtggct gcaggacaat atcgactgcg
    19261 gatcgggaat tatctttgac aacgatgagg ataaaacgga ttcagcagca ctgttgccct
    19321 gtatcgaaca ggcccgggag gatgtccgta ccctgcgtca tctgcagctt ctgcaccaga
    19381 accggtgaag ctcactcacc agacttcatt cctctgacgc cagcctgcac agggctggcg
    19441 ttttcattta tctgcaaaaa ggaatatcga ttatgtcaga tatcacaatc tcccgtccgg
    19501 aagtggtcaa cgggcatacg gacgttatct gctcaaccag cattcgccac attctggctg
    19561 tacgaaagag tacactgttg caaatcgaca cacttatccg acaactggct gaaatctcgg
    19621 tgctgacgga aagcatcgga ggtaaaactg ccccggactg ggccatgaaa caggattttc
    19681 gctgcggctg ctggctgatg gagaaacccg aaacagcaat gaaagccatt acccggaatc
    19741 ttgatcgcga aatctggcgt gacctgatgc aacgttccgg gatgctgtca ttaatggata
    19801 cgcaggcccg tgatacatgg taccggtcac tggagtacga taattttccg gaaatcagcg
    19861 aagcgaacat tctgagcaca tttgaacaac tgcaccagaa taaggatgag gtgtttgagc
    19921 gaggggtgat caacgtcttc agagggctga actggaatta caaaaccaat tgcccctgta
    19981 aatttggcag taaaattatc gtcaacaatc tggtgagatg ggaccggtgg ggataatgat
    20041 atggtcaccc ccaccttaac agcagtacgc tgttaaggta aatcccttta acggagagac
    20101 catcatgcag aacatcacac ttattggtat cgatctcgga aagcactcct tccacattca
    20161 ttgtcaagac aagtctggta aggctcttct gcgtaaaaaa tttacccgta ctaaactgat
    20221 gcagtttctg gcgacatgtc cgccctcagt tgttgtaatg gaagcctgtg cgggtgcaca
    20281 ctttatggct cgctgtatct ctgattttgg gcatgaaact aagctgattt ctccacagtt
    20341 cgttcgcccg tttgtcaaaa gtaataagaa tgattttgtt gatgcagaag ccatatgcga
    20401 agcggcttca cgaccatcaa tgcgttttgt ccagccaaga actgagaccc agcaggccat
    20461 gagggcgtta caccgggtca gagaatcgct catcagagat aaggtgaaaa caaccaacca
    20521 gatccacggt ttcttgctgg aatttggaat cagcctgccg ataggtgatg ctgtaataaa
    20581 acggttgtct ctcgtgttgg ctgaacacga aatccccgaa tatctgagcc gccttttggt
    20641 gaggttgcat acccactact tttaccttgt tgagcaaata gcagagctgg aatcagaatt
    20701 aagtcagtca atcaacgctg atgataccgc tcagcgcatt atgacaattc ctggtgttgg
    20761 tccgattact gccagcttac tatcgtcgca acttggtgac gggaaacagt tctcatgcag
    20821 cagggatttt gcagcttcca caggacttgt tccccggcag tatagcactg gaggaaaatc
    20881 gactctgttg ggtatcagta agcgaggtga taaaaattta cgccggttac tggttcagtg
    20941 tgcccgctca ttcataatgc gacttgaacg caagcatgga aaacttgctg agtgggttcg
    21001 ggagcaactc aacaagaagc attcgaatgt ggttacctgc gctctggcaa ataaactggc
    21061 tcgaattgcc tgggcaatca ctactcagaa aaaagaatat caggcctgat atagatgctg
    21121 atataactca attagtttat tttaaacaat aagatacaag ttacctttct ggttttgcga
    21181 agactgatta ttgatgacat gaacggcaaa tcgacctgat taaaaaccta acagatgaaa
    21241 tggctcactg aagccgaggg gatttttagg attatcaggt gcggaactca tcggggcgcg
    21301 ggcatccttg cccacagaga cgccggatag atttaagcaa gccaaccatt aatcaaaaat
    21361 cagtgttgca aaaacggggg tgaccataga tttcatctta tcaccggaca acaggctgac
    21421 cgactcgccg atctggaaag aatgttgcac ctgttcagcg gtaaaccaat ccccgacaac
    21481 cggggaaaca tcacccttcg tctggatgat cacattcagt ctgttcaggg taaagagagc
    21541 tatgaagatg agatgttcag catcagatac tttaagaagg gctccgcgca tatcacgttc
    21601 agaaaaccag aactggttga cagactgaat gatattatcg caaaacacta tcctgatatg
    21661 ctggcagtat agctttgcca gtatgctcaa agatcggaaa ttgtccgata agatatgatc
    21721 gcggggcata taaaccggtt tcagatggca tacccgatgg catactgtct ggaaggaaaa
    21781 ataaaaaagc gcatgttaaa caataacatg cacttataat ctggcggtga gggggggatt
    21841 cgaacccccg atacgttgcc gtatacacac tttccaggcg tgctccttca accgctcgga
    21901 cacctcacca aattgttgtt cctgtcttgc tggaacgggc gctaatttag ggaaatcatg
    21961 acctgaggtc aacaaacttt ttgaaaaaat cgcgcgttta ttcaaacttc aatcaatgtg
    22021 tggttttaat aagcgaaatc tgcttttttt gccaccgacc acggatttgt tatgctggtg
    22081 gcctttgtag atcataacga taagtgcgaa taaatttcgc acaacgcttt tcgggagtca
    22141 gtatggatat catcttttat cacccaacgt tcgataccca atggtggatt gaggcactgc
    22201 gcaaagctat tcctcaggca agagtcagag catggaaaag cggagataat gactctgctg
    22261 attatgcttt agtctggcat cctcctgttg aaatgctggc agggcgcgat cttaaagcgg
    22321 tgttcgcact cggggccggt gttgattcta ttttgagcaa gctacaggca caccctgaaa
    22381 tgctgaaccc ttctgttcca ctttttcgcc tggaagatac tggtatgggc gagcaaatgc
    22441 aggaatatgc tgtcagtcag gtgctgcatt ggtttcgacg ttttgacgat tatcgcatcc
    22501 agcaaaatag ttcgcattgg caaccgctgc ctgaatatca ttgggaagat tttaccatcg
    22561 gcattttggg cgcaggcgta ctgggcagta aagttgctca gagtctgcaa acctggcgct
    22621 ttccgctgcg ttgctggagt cgaacccgta aatcgtggcc tggcgtgcaa agctttgccg
    22681 gacgggaaga actgtctgca tttctgagcc aatgtcgggt attgattaat ttgttaccga
    22741 atacccctga aaccgtcggc attattaatc aacaattact cgaaaaatta ccggatggcg
    22801 cgtatctcct caacctggcg cgtggtgttc atgttgtgga agatgacctg ctcgcggcgc
    22861 tggatagcgg caaagttaaa ggcgcaatgt tggatgtttt taatcgtgaa cccttaccgc
    22921 ctgaaagtcc gctctggcaa catccacgcg tgacgataac accacatgtc gccgcgatta
    22981 cccgtcccgc tgaagctgtg gagtacattt ctcgcaccat tgcccagctc gaaaaagggg
    23041 agagggtctg cgggcaagtc gaccgcgcac gcggctacta ataaagcatc aggattcctg
    23101 ctatccttgg cgggaattga atacaggaga gagttatgta tcccgtcgac cttcatatgc
    23161 ataccgttgc cagcacacat gcatatagca cattgagtga ttacattgcc caggccaaac
    23221 aaaagggcat taaacttttt gcgatcaccg atcatggccc ggatatggaa gatgctccgc
    23281 atcactggca cttcattaac atgcgtatct ggccgcgagt ggttgatggg gtagggatcc
    23341 tgcgcggcat cgaagctaac attaaaaatg ttgatggtga aattgattgc agcggtaaaa
    23401 tgtttgactc gctggatctg attattgccg gttttcatga gccggttttt gcaccacatg
    23461 acaaagcgac caatacacaa gcgatgatcg ccactatcgc cagcggcaat gtgcatataa
    23521 taagccatcc cggaaatccc aaatatgaaa tagatgtgaa agccgttgct gaagcagccg
    23581 cgaaacatca ggtggcgctg gaaatcaata attcttcatt tttacactca cgtaagggca
    23641 gtgaagacaa ctgtcgtgcg gtagccgcag cggtacgtga tgctggaggt tgggtggcat
    23701 taggctcgga ttctcacacc gcgtttacca tgggggaatt tgaagagtgt cttaaaatcc
    23761 tcgacgcggt agattttccg ccagagcgca ttttgaatgt ttctccgcgc cgcttactga
    23821 acttccttga atctcgcggt atggcaccga ttgcggaatt tgcagacctt taattactag
    23881 taatggaaat atattaatga acgagttttc tatcctctgt cgtgtgctgg gttcgctcta
    23941 ttaccgccaa ccgcaagatc ctttactggt gccgctgttt accctgattc gtgaggggaa
    24001 actggctgcg aactggccac tggagcagga tgagttactg acgcgtttac agaaaagctg
    24061 tgatatggcg caagtctctg ccgattacaa tgcgttgttt atcggcgatg aatgtgccgt
    24121 gccgccatat cgtagcgcat gggttgagga cgcaacggaa gcggaagtgc gcgcttttct
    24181 ttccgaacga gggatgccac tggcggatac gccagccgat cacatcggca cattgctgct
    24241 tgcggcttcc tggatggaag atcagtcaac ggaagatgag agcgaagcac tggaaacact
    24301 gttcagtgag tatctgttac cctggtgtgg tgcgttcctc ggcaaagtgg aggcccatgc
    24361 aaccacgcct ttctggcgca ccatggcacc gctaacccgt gatgccatta gtgcaatgtg
    24421 ggacgagctg gaagaagatt ctgaagagta aatgtgatca tcgtcactca taactgcaac
    24481 agataatttg ttgttgcata aaatgtgtgc tcgatctcat tcatggccgc gttttctgct
    24541 atcatgcgcg gcatgaacat acttctctct attgcaatca caacaggcat tctctccggt
    24601 atctggggat gggtggctgt ttccctgggc ttactaagct gggcgggctt cctgggctgt
    24661 acggcctact ttgcctgccc gcaaggtggg ctgaaagggc tggcgatctc cgctgcaacc
    24721 ctgcttagtg gcgtggtgtg ggcgatggtc attatttacg gtagtgcact ggcaccacat
    24781 ctggaaattc tcggttatgt cataaccggt attgtggcgt ttctgatgtg tattcaggcc
    24841 aaacagctgc tgctttcatt tgttccgggg acgtttatag gcgcatgcgc gacgtttgcc
    24901 gggcagggtg actggaaact ggtgttacct tcgctggcgc ttgggctggt atttggttac
    24961 gcaatgaaaa acagcggcct gtggctggcg gcgcgtagtg caaagacggc tcaccgtgag
    25021 caggaaatca aaaataaagc gtgaggggca ctcacgcttt cgcttaaaca gtaaaatgcc
    25081 ggatgataat tccggctttt ttatctgtca ggattccggt ggaaccgaca tatggcggta
    25141 tttcaccaga atgtcattct gccgttctgc tttattttgc aaatcccaca gaccacggtc
    25201 gataccatca ttaatcagga aaatgacccc tgtttcgata gccgacatca gacacagcat
    25261 aacgggttcg tttgaggtgt aacccacttc cccttccagc aagcgctggt agtcaataaa
    25321 gcggaaaacc ccggcctgaa cttcatagga aagtatcgtc ttactggtgt tcaccgagga
    25381 gaggatctca ccggtactca cattgacgac acgcaggttc acggcaatct gatcgagctg
    25441 gtattgcgtg tctgcaccga tcccaaaata tcttgcccca acaccgcccg atttaacgtt
    25501 gctttcataa ccgataatcg aaccttcaac cataatattt gccgccgtta aagattgcag
    25561 cgggattcgg ttattaatgg caaccgtgcc gttttcttgt gccgcacgaa taatcttgcg
    25621 ctcgttaagc aggttttgta agccctagcg ctccagcggt ataaaccagc gagaatcttt
    25681 caatgccgtg accagcattg ccgtggcgct ttgcggaaca gcagtggaga agttacttgc
    25741 cgggtagggt ttaaattgcc cggtttcgtc ctgaatgttg tataccgaa
//
LOCUS       DAJVUY010000045        25426 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.045, whole genome shotgun sequence.
ACCESSION   DAJVUY010000045 DAJVUY010000000
VERSION     DAJVUY010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25426
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.045"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            282..1091
                     /locus_tag="OQQ72_001672"
     CDS             282..1091
                     /locus_tag="OQQ72_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin"
                     /protein_id="HCS2011440.1"
                     /translation="MTKISERWKHNGITEGYCNICGKYGLLTKDHVPPKCAITLGPVL
                     QKTVSEFFGIQEPVKPLNAKNGSYFRTICSHCNNKVLGGLDVAIENVTKSFKEQLSRY
                     MNGMNVYPFIRIPFDSISFTKAMIGHVLSATSVEDCKKEPVDSPFYTPLKDYVLGKNS
                     SFEETHDIYYWFYPHRMHISAQSVAFMNEGHVAFICALHFFPIGFIITMKNEGTYPAH
                     STKLELEDKFLTFNMTSINYEYTTFPFVNLKGNQMYAISNGHTCVSYPIIK"
     gene            complement(1188..1790)
                     /locus_tag="OQQ72_001673"
     CDS             complement(1188..1790)
                     /locus_tag="OQQ72_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2011441.1"
                     /translation="MNTSSWNKGRIVGQKRPLQISHIWGIRIRLELEGKTRDLALFNM
                     ALDSKLRGCDLVKLKVSDVAYGSSVSSRATVLQQKTGSPVQFEITKGTREAVTALIKL
                     GNLHSNDFLFRSRVGTNQHISTRQYNRIFHGWIAKLGLDDSLYSTHSMRRTKPYLIYK
                     KTKNLRVIQLLLGHRKLESTVRYLGIEVDDALEISESIEI"
     gene            complement(1931..3361)
                     /locus_tag="OQQ72_001674"
     CDS             complement(1931..3361)
                     /locus_tag="OQQ72_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004714530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011442.1"
                     /translation="MSSELIAKPGTGVLSTDTTKFEGYLSYLGLPTENIIASLPERQI
                     IEKNLPTFIDSLPAEVKRDARYLSKFVAGAAIGLFDASLNYVWNEVVLNLREKVVVYG
                     LDMFFDAAVGGGRRELYSTEEDLSGLKDNTLINTCRKLELISDVVYTKLNHILTMRND
                     IGASHPNSYSINAFELLGWLQTCVQDILNDKPSASAIQIKSFLENLKRSTDVLDEATI
                     HSMERPLNDLSLQNTDNLLNSIFGIYTADSTGNVVRKNIALFAPHIWNKSSDNVKYKL
                     GVTLDGYKNNLHNEKHALGIEFFTFCDGNRYQSLDSRIISLDGHADDLLEARYAWDNF
                     YNEPPHMRKILSYLKTENDIPLERVHKLIKTVLICRVGKGIPYNTGVSPAGRPLYDQF
                     FGMLGDQNIINTVIAMHSNEVRVNLDNKYCQQHMVSVLTLLRANARSERIQEIIDFLI
                     ANQTILHKVHNDKRYRDLTKNHISFG"
     gene            complement(3978..5255)
                     /locus_tag="OQQ72_001675"
     CDS             complement(3978..5255)
                     /locus_tag="OQQ72_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2254 domain-containing protein"
                     /protein_id="HCS2011443.1"
                     /translation="MISRWKWMLKQTFKKLWFRATLFAIVAIITALLSILFKSMIPES
                     VSVKVGAEAVDNILNILASSMLAVTTFSLSIMVTAYGSATTNVTPRATRLVVEDVTTQ
                     NVLATFIGSFLFSLVGIIALNMGAYGERGRVILFIVTLVVIALILITLLRWIQHLTSL
                     GRVGETTAKVEQAAIETFIARARNPCLGGYPWLENNEQPKGTVAVYPKKIGYVEYVDM
                     VKLSKLLTNDPRHVYLVAQPGSFIHPSTPVLYLSQGQESSISTDLLETIIVSDVRSFA
                     QDPRFCLSVMAEIACRALSPAVNDPGTAIDVIGRGVRILSAYAQNKSDEIEVKYPSVH
                     VAPLQNNDLLEDFFSPVARDGASMREIQIRVLKGLSMLSKGWPGIFAEAAQTLAFETL
                     EHATRADHIDSDRYLIKSIYYNLFSGEDSNKKP"
     gene            complement(5319..7316)
                     /gene="betT"
                     /locus_tag="OQQ72_001676"
     CDS             complement(5319..7316)
                     /gene="betT"
                     /locus_tag="OQQ72_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004119118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline BCCT transporter BetT"
                     /protein_id="HCS2011444.1"
                     /translation="MSENDTTPKKSTSQVNKAVFFTSALLIFLLVAFAAVFPDVADKN
                     FKLLQQQIFTNASWFYILAVALILLSVTFLGLSRYGDIKLGPDHAQPDFSYHSWFAML
                     FSAGMGIGLMFFGVAEPVMHYLSPPVGTPETVAAAKEAMRLTFFHWGLHAWAIYAIVA
                     LILAFFSYRHGLPLTLRSALYPIIGDRIYGPIGHAVDIFAVIGTVFGVATSLGYGVLQ
                     VNAGLNHLFGVPINETVQVILIVVITGLATISVVSGLDKGIRILSELNLGLAVLLLAL
                     VLCLGPTVLLLKSFVENTGGYLSELVSKTFNLYAYEPKSSNWLGGWTLLYWGWWLSWS
                     PFVGMFIARVSRGRTIREFVTGVLFVPAGFTLMWMTVFGNSAIYLIMNQGATDLANTV
                     QQDVALALFNFLEHFPFSSVLSFIAMAMVIVFFVTSADSGAMVVDTLASGGVANTPVW
                     QRIFWALLMGVVAIALLIAGGLSALQTVTIASALPFSVILLISIYGLLKALRRDLTKR
                     ESLSMATIAPTAARNPIPWQRRLRNIAYLPKRSLVKRFMDDIIQPAMTLVQEELNKQG
                     TISHISDAAEDRIRLEVDLGNELNYIYEVRLRGYNSPTFALAALDNDEQQSEQHRYYR
                     AEVYLKEGGQNYDVMGWNQEQLINDILDQYEKHLHFLHLVR"
     gene            7697..7936
                     /gene="relB"
                     /locus_tag="OQQ72_001677"
     CDS             7697..7936
                     /gene="relB"
                     /locus_tag="OQQ72_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin RelB"
                     /protein_id="HCS2011445.1"
                     /translation="MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERL
                     PFKQTLLSDEDAELVEIVKERLRKPKPVRVTLDEL"
     gene            7936..8097
                     /gene="relE"
                     /locus_tag="OQQ72_001678"
                     /pseudo
     CDS             7936..8097
                     /gene="relE"
                     /locus_tag="OQQ72_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     RelE"
     gene            8187..8777
                     /locus_tag="OQQ72_001679"
     CDS             8187..8777
                     /locus_tag="OQQ72_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001366942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS2011446.1"
                     /translation="MKIYVIKIAVHGVSPMVWRRLRIAADTSLAALHFIFQIVQGWGD
                     DHLHQFHIYGKDYGISYEGGIGFVDNPFRVVIDDFAFDAGDRFTYEYNFFEHWLHDIR
                     VEAIYENSTLKAPFCISGHGMPGATAADEFDKTLAFLEAIVNADDETTVGEIRPFADD
                     LDAVRFNRHKINRQLSRLDLASPVLEPEVIWLGRRR"
     gene            8914..9486
                     /locus_tag="OQQ72_001680"
     CDS             8914..9486
                     /locus_tag="OQQ72_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2011447.1"
                     /translation="MQYAYIRVSSADQNTARQEEALSKAGFQPDKICVEHASAKDTNR
                     PGLQELLGQLRPGDTLLVHSIDRLCRNMSDMCAVTTRLRDQGVTLIFLKEQLTFSAGT
                     NNPMQELQLHMMSAFSQFERALLKERQADGIAAKKARGEKTGRPGADIKKIQEIDALR
                     SRGVRLRIACDHAGLGVSTYYKLRHQMNNQ"
     gene            9523..10914
                     /locus_tag="OQQ72_001681"
     CDS             9523..10914
                     /locus_tag="OQQ72_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISKra4-like element ISKpn19 family transposase"
                     /protein_id="HCS2011448.1"
                     /translation="MQLTLQIVITDESGSSRTEELMTIQKSGETRNDIGLSVSESKLL
                     LNTVQQSVVQLQADEYTQHHIRCPHCLAARRIKGKQKIRYRTLFGVIPVSGLRVYRCR
                     CEESDTKTVSLLSDWAGDYSHPALKYIETRWASMISYEMTTRLLKDILPVGHSLNAST
                     VRNHLCQVAQRLDAEAEAHSGFLSGCPRDWGNLPRPGKPLVVGIDGGYVRDRDDKKRN
                     FEIIAGKSFSVGAPADTRRFGFVQKDDCHPERRLMTHLSAQGMQANQQIFFLSDGADN
                     LRDLQFGMYPESTHVLDWFHITMRLKVLMQYARGLLVSDPEAGSKVLALLESIKRYLW
                     HGNVVAALEHIDNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEMRRY
                     GEPVSTAFVESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVCWYP
                     GFQSDGKGPAMAA"
     gene            10959..11375
                     /locus_tag="OQQ72_001682"
     CDS             10959..11375
                     /locus_tag="OQQ72_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2011449.1"
                     /translation="MDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKL
                     VFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETK
                     VSTLCQELGITRQTLYRHISPVGQLRADGIKLLNRG"
     gene            complement(11694..12350)
                     /locus_tag="OQQ72_001683"
     CDS             complement(11694..12350)
                     /locus_tag="OQQ72_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS2011450.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            12745..13760
                     /locus_tag="OQQ72_001684"
                     /pseudo
     CDS             12745..13760
                     /locus_tag="OQQ72_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(13803..16808)
                     /locus_tag="OQQ72_001685"
     CDS             complement(13803..16808)
                     /locus_tag="OQQ72_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS2011451.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            16972..17529
                     /locus_tag="OQQ72_001686"
     CDS             16972..17529
                     /locus_tag="OQQ72_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2011452.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            17712..18572
                     /locus_tag="OQQ72_001687"
     CDS             17712..18572
                     /locus_tag="OQQ72_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS2011453.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            18782..19186
                     /locus_tag="OQQ72_001688"
                     /pseudo
     CDS             18782..19186
                     /locus_tag="OQQ72_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            complement(19293..20129)
                     /locus_tag="OQQ72_001689"
     CDS             complement(19293..20129)
                     /locus_tag="OQQ72_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS2011454.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(20129..20932)
                     /locus_tag="OQQ72_001690"
                     /note="aph(3'')-Ib"
     CDS             complement(20129..20932)
                     /locus_tag="OQQ72_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS2011455.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            complement(20993..21808)
                     /gene="sul2"
                     /locus_tag="OQQ72_001691"
     CDS             complement(20993..21808)
                     /gene="sul2"
                     /locus_tag="OQQ72_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS2011456.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            22138..22314
                     /locus_tag="OQQ72_001692"
     CDS             22138..22314
                     /locus_tag="OQQ72_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS2011457.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFDDKLACLNLSGV"
     gene            complement(22496..23500)
                     /locus_tag="OQQ72_001693"
     CDS             complement(22496..23500)
                     /locus_tag="OQQ72_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element IS5075 family transposase"
                     /protein_id="HCS2011458.1"
                     /translation="MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLAT
                     CPATTIAMEACGGSHFMARKLEELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISR
                     LSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCV
                     GTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLL
                     VQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
                     "
     gene            complement(23579..25345)
                     /locus_tag="OQQ72_001694"
                     /pseudo
     CDS             complement(23579..25345)
                     /locus_tag="OQQ72_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014834018.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
BASE COUNT         6478 a         6239 c         6412 g         6297 t
ORIGIN      
        1 tagattctta cgtagcgttt ctggcgtgca ttttcgggtg gtttgttact gtttttaacg
       61 gggatacgtc agaaacgcgc tcaggccgtc tgagcggtac gcgtaatgag gcgttatggt
      121 aaatagccta tgctaatgtc cgctaagagc gaaaagcaga ctgtcacgcg ttgaagttaa
      181 ttgtattact tagataaaca ctatcatttt cctgacgtta agttgtatct ttgataggat
      241 taaaaaacgt atagatagct tatgctactg agggaataaa aatgacgaaa attagtgaac
      301 gatggaagca caatggcatt actgaaggtt attgcaatat ttgtgggaaa tatggcttgc
      361 tcacaaaaga tcatgttcct ccaaagtgcg ccataacctt aggccctgtt ttgcagaaaa
      421 cagttagcga attttttggt attcaggaac cagttaaacc attaaatgct aaaaatggct
      481 cttatttcag aaccatttgc agccactgta acaataaggt attaggtggg ctcgatgttg
      541 caattgaaaa tgtaacaaag tcctttaaag aacagttaag tcgatatatg aatggtatga
      601 atgtatatcc attcattaga ataccttttg atagcatatc tttcactaag gctatgattg
      661 ggcacgtgct atcagcaact tcagttgaag attgtaaaaa agaacccgta gatagcccct
      721 tctatacacc tttaaaggat tatgttttgg gtaaaaattc aagttttgag gaaactcatg
      781 atatttacta ctggttttac ccacacagaa tgcacatatc cgctcaaagt gtagcattta
      841 tgaacgaagg acatgtggca tttatttgtg ctttacattt ttttcctatc ggttttatta
      901 tcacaatgaa aaatgaagga acataccctg cccactctac aaaattagaa cttgaagata
      961 aattccttac atttaatatg acctctataa attatgagta tacgacattt ccatttgtaa
     1021 atcttaaggg aaaccaaatg tatgcgataa gcaacggtca tacttgtgtg agttatccaa
     1081 taattaagtg acggctaaat catacaatct acgcatgttc actttctaca tataccatct
     1141 ataatgtccg ctgttggcac agggctgcta ttgcagccct gacaacctta gatttcaatc
     1201 gattcagaga tctctaacgc atcatcgact tcaatgccca gataacggac tgtgctttcc
     1261 agtttcctat ggcctaacag aagttggatc accctgagat tcttagtttt cttgtagata
     1321 aggtaaggtt ttgttcttct catggaatgt gtgctgtaaa gcgaatcgtc gagaccaagc
     1381 tttgctatcc acccatgaaa aatccggttg tattgccggg ttgatatgtg ctggttagta
     1441 ccgacccggg atcgaaacaa gaagtcatta ctatgtaaat taccaagttt tatcaatgca
     1501 gtaacagctt ctcttgtccc tttggttatc tcaaattgga cagggctacc ggttttctgc
     1561 tgcaacaccg ttgccctgct tgaaacagag ctaccatatg caacatcaga tactttaagt
     1621 tttaccagat cgcagcctcg tagcttactg tccagggcca tattgaacag agccaaatcg
     1681 cgcgtcttac cttccagttc aagcctgatt cggatccccc agatatgaga tatctgaagt
     1741 ggtctttttt ggcctacgat acggcctttg ttccacgatg aagtgttcat actcaaatct
     1801 cctgcaatgt gggagatttg agtatggttg tcccttatga gcgaattgca gacattaacg
     1861 tttggttaag ggacgggctg tagcccgtcc cagtgagcga agcttaattt agtccgtgtg
     1921 cagcgctttg ttagccaaaa ctgatgtgat ttttagttag atctctatat ctcttatcgt
     1981 tgtgtacttt atggaggatc gtttggttgg cgatcaaaaa atctataatt tcttgaattc
     2041 tttcgctacg agcattggct cttaacaaag tcaaaacgct taccatatgt tgctggcagt
     2101 atttgttgtc taaattcact cgcacttcat tagagtgcat tgctataact gtattgataa
     2161 tgttttgatc gccaagcatg ccaaaaaact gatcatacaa aggtcgtccc gccggagaaa
     2221 caccagtatt atatggtatt cctttaccaa cacgacaaat caaaactgtt tttataagct
     2281 tatgaaccct ctctaaaggt atgtcatttt cagtctttaa atacgaaaga atcttccgca
     2341 tatgaggggg ttcattataa aagttatccc aagcatacct agcctctaag agatcgtcgg
     2401 catggccgtc cagtgatata attctagagt ctaatgattg ataacgatta ccatcacaaa
     2461 acgtaaaaaa ctcaatacct aaagcatgtt tctcgttgtg aagattgttc ttgtatccgt
     2521 ctagcgtcac gccgagcttg tattttacgt tatcactgct tttattccag atatgcggag
     2581 caaaaagagc gatatttttt ctgacaacat ttcctgttga atcagctgta tatatgccga
     2641 aaatactatt gagtagattg tcagtattct gaagcgacag atcattcaaa ggtctttcca
     2701 tgctatgaat tgtggcttca tcaagaacat cagtggatct ttttagattc tcaaggaatg
     2761 attttatttg tatggcagac gcggacggtt tgtcgttcaa aatatcttga acgcatgttt
     2821 ggagccagcc aagaagttca aaagcattta tggagtatga atttgggtgc gaagcaccaa
     2881 tgtcattcct catagtcaat atatgattga gcttggtgta aacaacgtca gatattaatt
     2941 caagttttcg gcaagtatta ataagggtgt tgtcttttaa accagaaaga tcttcttcgg
     3001 tagaataaag ctctctacgt cctcctccaa ctgcagcatc aaagaacata tcgaggccat
     3061 aaactactac tttttccctt aaattcagta caacttcatt ccaaacataa tttaacgatg
     3121 catcaaatag tcctatagcc gcaccagcaa cgaactttga taaatatcga gcatctcttt
     3181 ttacctcagc aggtaaagaa tctatgaatg tggggaggtt tttttcaata atttggcgct
     3241 cagggagaga ggcaattata ttttcggtcg gcaaaccaag ataggataaa tatccttcaa
     3301 attttgttgt atctgtggaa agtacccctg ttccaggttt tgcaatcaat tctgaactca
     3361 tacgattatt tccttatctg gttgaaggct agagaacagc taacgctttt agcaggggcg
     3421 cgacgttagg agcgtcccat acctaaactt gttaaggtat ttgtgagcaa acgccaccag
     3481 tatttgggtt tagatccaat acatacttca tgcgagtaca acctatcccg aatcaagcag
     3541 gagtcatttc tcccgcactt agggtttgga catttcatgt tccctaccca tggtgaattc
     3601 gattcgtaat gtacgatctt cataaagcct taacaattta atagaaggct tttttgcccg
     3661 caagtggaac atttttctgc cttctttcct gatctttact cacatcaaac taacgctgat
     3721 atacctctat ttcaacaggt ttttctgaaa tcaataaatt tgcgtccggc aaactttata
     3781 cagccagtac gcgagttgtt cttgatttac ttaagctgga cacatgggaa ttatccagcg
     3841 gcttgtgcta gtaaaagaag aaattatcag gcatttacca caacgcccaa tgcccgcttt
     3901 tggcacaaag cagacgccca ctctcacgcg aatgctttgc ccttgacttg ccaacaaccg
     3961 tatcgcttgc tccgcaacta tggtttttta ttagaatctt cgccactaaa taaattataa
     4021 taaattgatt ttattagata tctgtcagaa tctatatggt cagcacgagt agcatgctct
     4081 aatgtttcaa atgctagggt ttgtgcggct tcagcaaaaa ttccaggcca acccttactc
     4141 agcatcgaca gtcctttaag gacccttatc tgaatttccc tcatactggc accatcgcgc
     4201 gcaacaggtg agaaaaagtc ttcaagtaga tcgttattct gaagtggtgc aacatgtaca
     4261 gaaggatatt tcacttctat ttcatcagat ttattctgcg cgtaagcgga aagtatacgt
     4321 acacctctgc caatgacatc aatggcggtt ccaggatcgt tcactgcggg ggaaagggct
     4381 cggcaggcta tttcggccat gacgctaaga caaaatcggg ggtcctgagc aaatgaacgt
     4441 acatccgaga caataatcgt ctcaagtaaa tcggtgctga ttgatgactc ctggccctga
     4501 ctcaggtaca aaactggcgt ggacggatgt atgaaactgc ccggctgcgc cacgaggtat
     4561 acatgacggg gatcattggt cagcagcttg ctgagtttca ccatatcaac atattcaaca
     4621 tagccaatct ttttcggata aactgcaacc gttcctttcg gctgttcatt gttctcaagc
     4681 catggatatc cgccgagaca gggatttctt gctctcgcaa taaatgtttc gatggccgcc
     4741 tgttctactt ttgccgttgt ctcaccaacc ctccccagag aggtcaaatg ctgtatccag
     4801 cgaagcaatg tgatgaggat taaggcaatg acaaccagtg ttacaatgaa taaaatgact
     4861 ctcccccttt ctccataagc tcccatattg agggcaataa tccctaccag actgaagaga
     4921 aaagaaccga tgaaggtggc cagtacattt tgtgtggtga cgtcttcaac aactaaacga
     4981 gtagctctgg gagtcacatt agtagtggct gaaccgtagg ctgtgaccat gatgctcagc
     5041 gaaaatgtgg tcactgccag catactcgat gccagtatgt tcagaatgtt atcgactgct
     5101 tccgcaccaa ccttcacgga aaccgactca ggtatcattg atttaaaaag aattgataaa
     5161 agggccgtta ttattgcgac aattgcgaat aacgttgccc tgaaccatag ttttttaaat
     5221 gtctgcttca gcatccattt ccagcgtgaa atcattctgc attccctcat attgcagccg
     5281 ggataaataa atgccgcctc tgtggcggca tgttgctgtt aacgaaccag atgcaggaag
     5341 tgcaggtgtt tttcgtactg gtccagtatg tcattaatca gctgttcctg attccagccc
     5401 attacatcat aattttggcc gccctctttg agatagactt cagcgcgata atatcgatgt
     5461 tgttcactct gctgctcatc attatccagc gcagcgagcg cgaaggtcgg tgagttatac
     5521 ccgcgaagcc tcacttcata tatataattc agctcgttgc ccaaatcgac ttcaaggcga
     5581 atacgatcct cggcggcgtc actgatgtgg cttatcgttc cctgcttgtt aagttcctcc
     5641 tgaaccagcg tcatggcggg ttggataatg tcgtccataa aacgtttcac aagagagcgc
     5701 ttcggcaaat acgcgatatt gcgtaacctt ctctgccagg gaattgggtt acgtgcagcc
     5761 gtaggagcaa tagtcgccat gctaaggctt tcacgcttgg tcaaatcccg acgcagggct
     5821 tttaacagtc cgtatatgga tattaataag ataactgaga agggcaatgc actcgctatc
     5881 gttacggttt gcaacgcact cagcccccct gcgatcagca gggcaatagc aacaacgccc
     5941 atgagcaatg cccagaaaat tcgctgccag acgggcgtgt ttgccacccc acctgatgcc
     6001 agagtatcca caaccattgc ccccgaatca gcagacgtta caaagaagac gatgaccatc
     6061 gccattgcaa tgaatgacag cacggaagag aacgggaaat gctccaggaa attaaacagg
     6121 gcaagcgcaa catcctgctg aacggtattg gcgaggtcag tggcgccctg gttcatgatg
     6181 agatagatgg cgctgtttcc aaacaccgtc atccacatga gcgtaaagcc ggcgggaaca
     6241 aacaacacgc cagtcacgaa ctcacgaatt gtcctgccgc gggaaacgcg tgcaatgaac
     6301 atacctacaa acggcgacca tgaaagccac catccccagt ataataatgt ccagcccccc
     6361 agccagttgc tcgacttggg ttcatacgcg taaaggttga acgttttact caccagttcc
     6421 gacagataac cacccgtatt ttccacaaat gacttcagca gaagcacagt gggacccagg
     6481 cacaagacca gcgccaggag caacaccgcc aggcccagat taagctcaga caggatgcgt
     6541 attcccttgt ccaggccgga caccaccgaa atcgtcgcta accccgtgat gaccacgatc
     6601 aaaatgacct gtaccgtttc attgatgggc acgccgaaaa gatggttcaa accggcattc
     6661 acctgcaata caccgtaacc cagcgatgtt gcaacgccaa agacagtgcc tatcacggcg
     6721 aagatatcaa ccgcgtggcc tataggcccg taaatgcgat cgccgataat gggatagagc
     6781 gcagaacgca gcgttaaagg cagaccgtga cggtaactga aaaaggccag aatcagcgcc
     6841 acgatggcat aaattgccca tgcgtgcaga ccccagtgga agaacgtcag gcgcatggct
     6901 tccttcgctg ccgcaacggt ctctggagtg ccgacaggtg gcgaaagata atgcatcaca
     6961 ggttcggcaa cgccaaagaa catcaggccg atccccatcc ctgccgaaaa aagcatcgcg
     7021 aaccaggagt ggtagctgaa atcaggctgc gcatggtctg ggcccagctt tatatcaccg
     7081 taacgtgaga gtccaaggaa cgtgacgctc agtaaaatca gggccacagc aagtatgtag
     7141 aaccagctgg cattcgtgaa gatttgttgc tgaagtagtt taaaattttt gtcggcgaca
     7201 tccgggaata cggcggcaaa ggcgacaaga aggaaaatta gcaaagcaga tgtaaagaat
     7261 accgctttgt taacctggct tgtagacttc tttggggttg tatcattttc actcataatc
     7321 atttattcca ttaattaaat ccgcactgga tagaaggtac tacctctcac agagtagcaa
     7381 agttcaactg gctatgcggg attaatcgga atgcatggtg gaatgagtgc cgatacaaat
     7441 catcctatat tctaaggagt tttaagttac tcagcctgcc aattactggg gcatttaatt
     7501 tgtatgatct gtatcaaagc tgggatataa gttaagtgaa gtatattagg cacgaattac
     7561 cagcgtctgc tcttggcaca aagcggacag tgatcaccgt tcttacgact actttctgac
     7621 ttccttcgtg acttgcccta agcatgttgt agtgcgatac ttgtaatgac atttgtaatt
     7681 acaagaggtg taagacatgg gtagcattaa cctgcgtatt gacgatgaac ttaaagcgcg
     7741 ttcttacgcc gcgcttgaaa aaatgggcgt aactccttct gaagcgcttc gtctcatgct
     7801 cgagtatatc gctgacaatg aacgcttgcc gttcaaacag acactcctga gtgatgaaga
     7861 tgctgaactt gtggagatag tgaaagaacg gcttcgtaag cctaagccag tacgtgtgac
     7921 gctggatgaa ctctgatggc gtattttctg gattttgacg agcgggcact aaaggaatgg
     7981 cgaaagctgg gctcgacggt acgtgaacag ttgaaaaaga agctggttga agtacttgag
     8041 tcaccccgga ttgaagcaaa caagctccgt ggtatgcctg attgttacaa gatggagagc
     8101 atgaaaaacc tcggggcagc catcgaatga tgccatctac aggggttaaa ataaccacca
     8161 tcatttcata acaatacctg ctgactatga agatctacgt catcaaaata gcagttcatg
     8221 gagtcagtcc gatggtctgg cgtcggctga gaattgctgc cgacacgtca ctggccgcgc
     8281 ttcacttcat tttccagata gtgcagggct ggggggacga ccatctccat caatttcaca
     8341 tttatggcaa agattacggt atctcctacg aaggaggcat cggttttgtc gataatccgt
     8401 tccgggtcgt gattgatgat tttgcttttg atgctggcga tcgctttacc tatgaataca
     8461 atttctttga gcactggctt catgacattc gtgttgaggc catttatgaa aactctacgc
     8521 tgaaagcgcc gttttgtata agcggccatg gtatgcccgg agccacagct gcggatgagt
     8581 tcgataaaac cctggcgttt cttgaagcta tcgttaatgc ggatgatgaa acaacggtcg
     8641 gcgagatccg cccttttgct gacgacctgg atgctgtcag gttcaaccgc cacaaaatca
     8701 accggcaact gagcaggctc gaccttgcat ctccggtact ggagcctgaa gttatctggc
     8761 tgggccgtcg tcgctgactg atgtctataa aggtatacgt tttcagcatg cctctcagat
     8821 ccccgaaaaa atgtctataa acctccctaa atcagtgttt atggattatt ctttaaatct
     8881 ctatgatgtt taaagacctt ccggaggttt tgcgtgcaat atgcctacat cagggtaagc
     8941 tcggccgatc agaatacggc ccgtcaggaa gaggcattgt caaaggcggg ttttcagcct
     9001 gataaaattt gtgttgagca tgccagcgcg aaggacacaa accgcccggg gttacaggaa
     9061 ctcctggggc aattacgccc tggtgatacg cttctggttc attccatcga tcgcctttgc
     9121 cggaatatgt cggatatgtg cgctgtcacc acccggcttc gtgaccaggg cgttaccctt
     9181 atttttctga aagagcagct gacgttcagc gccggcacaa acaatccgat gcaggaactg
     9241 cagctgcaca tgatgtcggc attcagccag tttgaacgag ccttactgaa ggaaaggcag
     9301 gccgacggca tcgccgcgaa aaaagcacgg ggtgaaaaaa cagggcgccc cggcgccgat
     9361 atcaaaaaga tccaggaaat tgacgcactc agaagcagag gggtcaggct caggatcgcc
     9421 tgcgaccatg cgggccttgg cgtttccaca tattataagc ttcgtcacca gatgaacaac
     9481 cagtagccgg gagatagtca tccaccacag caggaggcaa tgatgcaact gacgctccag
     9541 atagtcatca ccgatgaatc aggctccagt cgaacggagg aactgatgac aatccagaaa
     9601 tcaggggaga cccggaacga catcggatta tcggtgtcag aatccaagct gttgctgaat
     9661 acggtccagc agtcggtggt ccagctgcag gcagacgaat atactcaaca ccatatccgg
     9721 tgccctcact gccttgctgc gcgcagaatc aaaggcaaac agaaaatacg gtaccggacg
     9781 ctgtttggcg ttattccggt atccgggctt cgggtgtacc ggtgccgttg tgaagagagt
     9841 gatacaaaga cagtcagttt gctcagcgac tgggccggcg attattctca cccggcactg
     9901 aaatatattg aaacccgctg ggcctcgatg atctcctatg aaatgacgac tcgtctgctg
     9961 aaagatattc tgccggtggg ccacagcctg aatgcctcaa cggtgaggaa tcatttatgc
    10021 caggtggcgc agcgtcttga cgctgaggct gaagctcatt caggttttct ttccggctgc
    10081 ccccgcgact gggggaacct gcccaggcca ggaaaaccgc ttgtggtggg tatagatggt
    10141 ggttatgttc gcgatcggga tgacaaaaag cgtaattttg aaattattgc cgggaagtct
    10201 ttttccgttg gtgcgcctgc tgacacccgc cgcttcggtt ttgttcagaa ggatgactgt
    10261 catccggaac gcaggctcat gacccacctt tcagcgcagg gaatgcaggc caaccagcag
    10321 atattttttc tgtccgacgg cgcggataat ctcagggacc tccagttcgg tatgtaccct
    10381 gagtcaacgc atgtgctgga ctggtttcat atcaccatga ggctgaaggt gctcatgcaa
    10441 tatgcccggg gactgctggt atcagatcca gaggcgggga gtaaagttct ggcactgctg
    10501 gaaagcatta aacgatatct ctggcatggc aatgttgtcg ctgcgctgga acatattgat
    10561 aattgcgtta tgtattgcga tgaccctgaa ctcagctatc ctagcctgaa atccctgcaa
    10621 aaacatctgg atgaaatgta tacctacatc cggaataata agatgatgat cccaaactac
    10681 ggcgaaatgc gtcggtacgg agagccggta tcaaccgcgt ttgtggaatc cacgatcaat
    10741 gaagtgatcg ccagacgaat ggccaaaaag cagcagatgc agtggagcag aaaaggggct
    10801 cattatttgt tacagacccg gaccgccgtt ttgaataacg aactgcagga taaatttgtc
    10861 tgctggtatc cgggttttca aagtgacggg aagggaccag cgatggcagc atagctcacg
    10921 ctgccccaat attttttatg ctctcggtcg tatggaagct ggaccgcctc ggtcgtgatc
    10981 ttcgtcatct cattaataca gtgcacgacc tgaccgcgag ggggaccggt ctgaaagtgc
    11041 tgaccggtca cggggcgact atcgacacaa caacggccgc tggcaagctt gtcttcggta
    11101 tctttgccgc actggcggag tttgagcgcg aactgattgc tgaaagaacg actgcaggtc
    11161 tggcatcagc aagagcccgt gggcggaacg gcggccgacc ttataaaatg acgccagtca
    11221 aactgcgact ggcaatggca tcaatgggac aatcagaaac aaaggtcagt acgctatgcc
    11281 aggaacttgg gataacccgg caaactttgt acaggcatat ttcccctgtt ggtcaactgc
    11341 gggcggacgg gatcaagctg ctcaaccgtg gataatttga acggacggaa aaatctgggg
    11401 ttccggcgta gtacccctat cacctccaca tttttgcaac agtgccttat aaatggcagc
    11461 cttatgttta cttgccaaga tgggctacca tatgatgttt tatactgagc aatattaata
    11521 ttatctttaa tggaaaaatt aagcccacta agtgacccac tgctatatgg ctctattgtg
    11581 aagacgcctg agggtaaaaa tttatacatg gttgtcccta tgtctattat tgcaaggttg
    11641 acaatattat tcgttttata aatttgagcg tttaaaatca cacatcaaag caattagtca
    11701 ggataaacaa caatacccag tgcttcgaga atcagttctt gctgccaggc tgcaattttg
    11761 atacctgatg tatcgacttt gcggggatct aaaccgtcga gttcggcgtg gcataaattg
    11821 gcaccctgta ggctaaattg cccccagaca tcttcggaaa aaacacctcg acttaagtct
    11881 gactctttca gtgatgcacc cgctaggttc gttcctatcc agcgattttc aaacaactca
    11941 catttttcta aacaaaccct ctccatattg gcataggaaa gattacatcc agaaataaat
    12001 gctgagcaaa agtacatacg attactcact tgatgggcaa agtttgttcg ggaaaagttg
    12061 gcacctttta aatcacacgc acggaactct ataccgtagc aattggcatt actgaagttt
    12121 gccatcgcaa gttggcattg ttggaaactt gcatcacgaa gatctgcgac atcaaagtgg
    12181 cagccttcga tatcaccctg ttcaatgaac ttgcagttga cgaatgtcgt atcacgcaag
    12241 ttagcacgtc gaaagtcgct gcgaatgaat gtgcaagcgg tgaaggtgag atcacttaag
    12301 tctttatgtg aaaagttgtg gtgccgatat gtatgattgt aggtttccat gagtactcct
    12361 tgttgaaagg agggctagac taccattata catatgccaa gacattaaaa taaaagcctg
    12421 ttacatcaac acattacaac ccctcaattt acctgtttta agtggtcaaa ttggcgcgta
    12481 gagcgcctat cgctcttgca ttggcacgcg gccctgttga aaaaagttat tcgctttaga
    12541 tagggttagg agagccgtgc ttcgccggta aaaaatcgga ctatccgacg cagggcggac
    12601 tcatcggcgg agaagcaaac tttgactata tctccctaca cttggaagag ggctagactg
    12661 gccccataga tcaccagaca cttcgactct cttaaaataa gaggtagtct tggaactatg
    12721 tttaatacca gtcagaacga taagatggtt gaagtgttat caggacctga gcggcgtcgg
    12781 cgtcgtacac cgcaggaaaa aattgccatt attcagcaga ctatggagcc cggtatgacc
    12841 gtgtctcatg tcgcgcgcct gcatggcatc aatgcaaacc agatattcaa atggcgcaag
    12901 caatattaag acggttcact gacggctgtt gcatcgggcg aggaagtggt gccggcctcc
    12961 gaactcgctg ccgccaataa gcaaattcgc gaactccagc gccttctggg caaaaagacg
    13021 atggaagccg agatactcaa agaggccgtg gagttcggcc gggcaaaaaa atggattgcg
    13081 catgcgccct cgttgcctgg gaacgacgaa taagcgacgt ttgcagaagt cttggcgtgt
    13141 cgcgtgcgca gttgagcatt cgggttcacc ggccatctga ctgacaggat cgcagacggc
    13201 agccccgttc tgacgatacc accgtattgt cccggataaa catggcggtg gctgacctgc
    13261 cgacgtatgg ttatcgccgt gtgtgggcgc tgctgcgacg ggagtcggag cgggacggcc
    13321 tgcctgtggt taatgcaaag cgggtgtatc gcattatgag aacgcataat ctgcttcttg
    13381 aacgtaaacc cgctgatcct tgccgtaagc gggcccataa ggggcgcgta gcagtagcgg
    13441 aaagtaaccg gcgctggtgc tcagatggct ttgagttccg ctgtgataat ggcgaaaagc
    13501 tgcgggtgac cttcgcgcag gactgctgcg acagggagat cattgactgg gcagcgagca
    13561 ccggaggcta tgacaaagaa acggtgcagg atgtcatgct gggtgcggtg gaaaaacgct
    13621 tcggaaggca gttgccaaca gtgccggcgt tcgcccggtt gctgggactg gagccttgta
    13681 cgacagcagt gcgaagcccg gaaagcaatg gcatagcaga aagcttcgtg atgacgataa
    13741 aacgggacta catcagcatc aggattttag gggtctgacg ctcagtggaa cgaaaactca
    13801 cgttaagcaa cgttttctgc ctctgacgcc tcttttaatg gtctcagatg tcctttggtc
    13861 accagttctg ccagcgtgaa ggaataatgg ccgagcatat tgatatgtcc gtggcaaagc
    13921 ggggagaggc gtgcgatatc ttcatcattc agtgtttcac cctgcgcccg gagatgatcc
    13981 agggctgcct gcatataaat agtgttccat aacacgacgg cgttagtgac cagccccagt
    14041 gtgcccagtt gatcttcctg accgtcggta tatcgttttc ttatctcacc tttttgaccg
    14101 tgacagatgg ctctggcaac ggcatggcga ctttctcccc gattaagctg ggtcagaatg
    14161 cgccggcggt aatcttcatc atcaatataa ttaagcagat acagcgtttt gttgatgcgc
    14221 cccacttcaa tgattgcctg agtcagtccg gaaggacgtt cacttttcag caatgaacgg
    14281 accagcactg aaacctgtac tttgcccagc ttcagggagc cagcggtccg gatcatttcg
    14341 tcccactgaa ggactatttt tcggggatct gattgccctc tggcaatatc attcagcacg
    14401 ccatagtcgg catcatggtc cattcgccag aaaaccgaag caccggcatc agccaggcgt
    14461 ggagaaaact ggtatcccag cagccagaaa aggccaaaga caagttcgct ggcacctgct
    14521 gtatcggtca taatttcggt tggattcagc ccggtctcct gttccagaag accttccagc
    14581 acaaagatag agtccctcag cgtccccggt ataacgatgc catgaaagcc ggaatactga
    14641 tcggacacaa agttgtacca ggtgatccct ctgttattac caaagtattt gcggttcggt
    14701 ccggcattga ttgttctgac tggcgtaaca aagcgcattc catctgcaga tgccacttct
    14761 cctccacccc atatctgtgc cagtggcagc gttgcctgaa aatcaaccag tctggcatta
    14821 gcgctggtga tagtttcagc ccgcagatag ttcgcttttg tccagttcag ccggtgtcgg
    14881 gtcagtgcag gaacatttga tctgatcagt ggttccagac cgatattgca ggcttcagcc
    14941 atcagcacgg cgctgatgct gacgggcaga tcatcaactc tggcactggc ttcactagca
    15001 tggaaaaact catcagcaaa tccggtatgg gcgttaattt cgagcagcaa ctccgttaaa
    15061 tccaccggag ggagtagatc actgatcatt ttgctcagtc gtttcagact gtccggctca
    15121 tcaagactgg cgaggggaga aattgtcaac cggggcttcg ggccagaaac atcgagttcg
    15181 acagcctcat tttcgcaaag acgtgcagca acctgtctgt aacgactatc aagctgatga
    15241 cccagagatt ttattgcttc ctgcgggtct gtcgggtgcc ccaaagaacg ataaacctta
    15301 atccggtttg cctgccagtc agcaccctgt agtaatcttg cacgaggatc tccccaccgg
    15361 ttactgccgg taacgtagac atccctccgc ctcagactat cctgcagttt actgagaaag
    15421 cagagcgtgt atcccctgcg ggtgatatgt ttttccttgt taatcaccag ccgtttccat
    15481 gaccgactga taatttccgt tggtgcgtcg tcaaaaaact gccgccgtga gctgaactcc
    15541 cggctgaggt agtcacaggc attcagagtg gtaaccccgg caggtgcgga tgaaaattta
    15601 acggtattca gcagatgggg caggaaacga cgaacgcgcc cgtactgctc caccatttct
    15661 tcatgaaaat tatcgtctga gggccgggca atttcacgga caagcgtgat gatttcagcc
    15721 agcttttgcc ttgggatgta gctgaacacc tcagcacgaa tcgattcgtc cggtgtttct
    15781 tctttcagca ggtacgaaca tgcgctggcg agcgccaatg cagatttatc cagatccttc
    15841 agcgagcgga gccgtttttt ctgcccaatc tttctggcgt cacggatgat aacggccagc
    15901 atggcgtcca gaacgtccaa tgcatcatcc agcgccagcg tttcccatgc aaggacaaag
    15961 gcaaccagaa ccgccatcct tttctgcggt gacatcctgg caatattgaa caccgaagtc
    16021 ataccagcat aacgtgcgag atttttcagg cgcacagccg ggagtgtact caggttttca
    16081 gcatgcaggc caaaatcgtt cagagttttc cagcgttcaa ttgcttcatt aaacgccgga
    16141 ccactgatgg tcacagggcc ctttttcagt gattccagta aagacaggcg gctgcaatca
    16201 gttggcccca gcagcatctc cagctgtgaa cgctgttcgg ctgacggtat cagtgccagt
    16261 ttgttccaca ggcgcaacgt cgccttttcc cttacctctg aaatcaaccg ggtcagcgta
    16321 gtggctccgg ggagaataat acgatgttgc ataagccacc ctgtcgccag atcgaaaagc
    16381 aggccaggac gttcgttgct tatccagctc cgggtatata aaagacgggt aaggcgaaat
    16441 gtccagggcc aggcaaattc acgatactga tagtgctgac gtatcagcgc tgcatgctca
    16501 cggcgggtat tttccctctg accgtattct gcaagaacgg tgatatcacg aatcccgagc
    16561 tgtctggcgg taaaatgccg gacgccggaa ggaatatgat tcatatcggt gaggaaggtg
    16621 cccagaaaac ggacacatcc aatttgcagg gcaatgccca gacggttgtg atcacctctg
    16681 ctttttccga taaattcctt gtctgcttca tcaaggtgaa aatatcgtgc cagctgaagc
    16741 tcatccggtt caccggtgaa tctgccatag ctttcagtct gctcagtggt cagaaagtca
    16801 acgggcatat cggcctccct gcctgacggg catttagtaa catttttcca accgtacgaa
    16861 atgttataaa ttatcggaca tcgtaaaact gttacattaa tatgtctatt aaatcgtaaa
    16921 tttgtaataa tagacatgag ttgtccgata ttcgatttaa ggtacatttt tatgcgactt
    16981 tttggttacg ctcgggtctc aaccagtcag cagtctcttg atcttcaggt cagagcactc
    17041 aaagacgcag gtgtgaaagc aaaccgtata tttaccgata aggcatccgg cagttcaaca
    17101 gaccgggaag ggctggattt gctgaggatg aaggtggagg aaggtgatgt cattctggtt
    17161 aagaagctcg accgtcttgg ccgcgacact gccgatatga tccaactgat aaaggaattt
    17221 gacgctcagg gcgtggcagt ccggttcatt gatgacggga tcagtaccga cggtgatatg
    17281 gggcaaatgg tggtcaccat cctgtcggct gtggcacagg ctgaacgccg gaggatccta
    17341 gaacgcacga atgagggccg acaggaagca aagctgaaag gaatcaaatt tggccgcagg
    17401 cgtaccgtgg acaggaacgt cgtgctgacg cttcatcaga agggcactgg tgcaacggaa
    17461 attgctcatc agctcagtat tgcccgctcc acggtttata aaattcttga agacgaaagg
    17521 gcctcgtgat acgcctattt ttataggtta atgtcatgat aataatggtt tcttagacgt
    17581 caggtggcac ttttcgggga aatgtgcgcg gaacccctat ttgtttattt ttctaaatac
    17641 attcaaatat gtatccgctc atgagacaat aaccctggta aatgcttcaa taatattgaa
    17701 aaaggaagag tatgagtatt caacattttc gtgtcgccct tattcccttt tttgcggcat
    17761 tttgccttcc tgtttttgct cacccagaaa cgctggtgaa agtaaaagat gctgaagatc
    17821 agttgggtgc acgagtgggt tacatcgaac tggatctcaa cagcggtaag atccttgaga
    17881 gttttcgccc cgaagaacgt tttccaatga tgagcacttt taaagttctg ctatgtggtg
    17941 cggtattatc ccgtgttgac gccgggcaag agcaactcgg tcgccgcata cactattctc
    18001 agaatgactt ggttgagtac tcaccagtca cagaaaagca tcttacggat ggcatgacag
    18061 taagagaatt atgcagtgct gccataacca tgagtgataa cactgctgcc aacttacttc
    18121 tgacaacgat cggaggaccg aaggagctaa ccgctttttt gcacaacatg ggggatcatg
    18181 taactcgcct tgatcgttgg gaaccggagc tgaatgaagc cataccaaac gacgagcgtg
    18241 acaccacgat gcctgcagca atggcaacaa cgttgcgcaa actattaact ggcgaactac
    18301 ttactctagc ttcccggcaa caattaatag actggatgga ggcggataaa gttgcaggac
    18361 cacttctgcg ctcggccctt ccggctggct ggtttattgc tgataaatct ggagccggtg
    18421 agcgtgggtc tcgcggtatc attgcagcac tggggccaga tggtaagccc tcccgtatcg
    18481 tagttatcta cacgacgggg agtcaggcaa ctatggatga acgaaataga cagatcgctg
    18541 agataggtgc ctcactgatt aagcattggt aactgtcaga ccaagtttac tcatatatac
    18601 tttagattga tttaaaactt catttttaat ttaaaaggat ctaggtgaag atcctttttg
    18661 ataatctcat gaccaaaatc ccttaacgtg agttttcgtt ccactgagcg tcagacccct
    18721 aaaagaactt tccgctaagc gatagactgt atgtaaacac agtattgcaa ggacgcggaa
    18781 catgcctcat gtggcggcca ggacggccag ccgggatcgg gatactggtc gttaccagag
    18841 ccaccgaccc gagcaaaccc ttctctatca gatcgttgac gagtattacc cggcattcgc
    18901 tgcgcttatg gcagagcagg gaaaggaatt gccgggctat gtgcaacggg aatttgaaga
    18961 atttctccaa tgcgggcggc tggagcatgg ctttctacgg gttcgctgcg agtcttgcca
    19021 cgccgagcac ctggtcgctt tcagctgtaa gcgtcgcggt ttctgcccga gctgtggggc
    19081 gcggcggatg gccgaaagtg ccgccttgct ggttgatgaa gtactgcctg aacaacccat
    19141 gcgtcagtgg gtgttgagct tcccgtttca gctgcgtttc ctgtttgggg tcgtttgcgg
    19201 gaaggggcgg aatcctacgc taaggctttg gccagcgata ttctccggtg agattgatgt
    19261 gttcccaggg gataggagaa gtcgcttgat atctagtatg acgtctgtcg cacctgcttg
    19321 atcgcggccg cgatagctag atcgcgttgc tcctcttctc catccgcgtt ccaagctgcg
    19381 gaaaggcacc cataagcgta cgcctggtcg agcaggcgac gcggatcgac gtccagcgca
    19441 cgagagaatg cgtccgccat ctgtgcaatg cgtctaggat cgagacaaag gtcgtctctg
    19501 tcagccggat cgtagaacat attggcggcg ccaaagccca cttcaccgac cagaccgacg
    19561 ggatctatca ccagccagcc gcgactggag aacatgatgt tttcatgatg cagatcgcca
    19621 tgtagcccac gcagttccga ggcattgctc atcatttgat cggctataat cgccgcgtgg
    19681 acgtagtcag tttgacaacc tgcgttttga tcatcgcgcg cccgctgaaa caaagctgca
    19741 aagcgatccc ggatcgggag aagggcagaa ggcaggggtt cctcagatgc ggcatacagc
    19801 ttcgccatta gttccgctgc aatttcggtc gcctggtagt cgccgtgctc ggcaacgatg
    19861 tgagagagca ttcgctcccc ggcatattcg agcaacatca gattgttctc acgaccgagc
    19921 aaccggactg ctcccctccc attgcgccat accagatagt cggccccgcg cagttcatca
    19981 gcaatgtctt ctataggttt caatcccttg acgattgcag gagtcccgtc tggcaatgaa
    20041 actttccaaa cgaggctgga aaaggtgtcc gcaatgagaa caggttgcga aacgtgccaa
    20101 tgagcaggaa aaacaggcgg catgaacatc aaccccaagt cagagggtcc aatcgcagat
    20161 agaaggcaag gcgttcgcgg tcgggggctt cgatccccaa tacattgaat aggacagcga
    20221 aggcgcgctc tgcttcatct ggcgctgccc agttctcttc ggcgttagca atcatgagtg
    20281 ccaaatcggc atagcgatct gctgttccga gccgcccaag gtcgatcaga cccgtgcatt
    20341 gaagagtttt agggtccacc atgaagttcg gcatgcaggg atcaccatgg caaacaacca
    20401 tatcggtgcg ctcttggtcg agccgcaccg gtagctctcg ttcgacacga gccaaaagat
    20461 cgagctgcgg cgtactcttg tcctcgtccg gtaagaagtc gggattgacg gcattgcggg
    20521 acaccacatc aacggcgcgt ccgaacattc gcgacagcct gcgctcaaac ggacattgat
    20581 caaccgatag gctgtgaaca gcgccaagtt gctgccccat tgacggccac gctttgagca
    20641 aatccgctcc agacagatca gccgccggta ctcccggaat tgccgttatc accaagcatg
    20701 caccctcctg ttcctcctgc cagttgatga cctcggggca agccacacct cgacctttga
    20761 gccaaatgag gcggtcacgc tctccagcga gctcaccgcg gcgggaagca ggtgcgattt
    20821 tcgcgaaggc atgcccgtca ccacgtcgaa aaacaaaatc accagattct ccgcctctga
    20881 caggcaacca gtcagaatgc gattcaccaa aaaaaatatt agttcgattc aatggaggtt
    20941 ccttcagttt tctgatgaag cgcgaatata gagaaatatc ccgaatgtgc agttaacgaa
    21001 ttcttgcggt ttctttcagc gccgccaata ccgccagccc gtcgcgcaag gggcgcggct
    21061 cgtgtgtgcg gatgaagtca gctccacctg cggcggcggc aagctctgca gcgagtgtcg
    21121 cggccccgac atcccccgga ccacggcctg tgagcgcgcg cagaaaggat ttgcgcgaaa
    21181 cagacagaag caccggcaaa tcgaagcgca gccgcaattc atcgaaccgc gccagcaccg
    21241 agagcgaggt ttcgggagca gcccccagaa aaaaccccat gccgggatca aggacaaggc
    21301 ggttgcgttt gataccggca cccgtcagcg ccgcgatgcg cgcgtcaaag aacgccgcaa
    21361 tgtgatccat gatgtcgcca gcgggtgcct cgcgccgatc tgcctgcccg tcttgcaccg
    21421 aatgcataac gacgagtttg gcagatgatt tcgccaattg cggatagaac gcagcgtctg
    21481 gaaaaccgcg aatatcattg agataggcca caccacgcga caaggcatag gcttgcgtcg
    21541 cgggttgata actgtcgagc gagacgggaa tgccatctgc cttgagcgcg tccagcaccg
    21601 gcgcgatacg cgcgatttct gtgtcggacg aaacaggcgc ggcgtcggga ttgctggatg
    21661 ccggaccgag gtcgatcaca tctgccccct cggccatcag cttacgcgcc tgcgcaatgg
    21721 ctgcgtctgg cgccagatac cggcctccat cggagaaact gtccgaggtt atgttgacga
    21781 tgccgaaaat gatgagcgat ttattcatgg gggcttctat aataataata atcgagcatg
    21841 agtctcatac ggatgctcgg gtcgaaaggg aatccccagg cgagtaacct gtttgcggtg
    21901 ctccattagc tgcaggagca gaatagcata catctggaag caaagccagg aaagcggcct
    21961 atggagctgt gcggcagcgc tcagtaggca atttttcaaa atattgttaa gccttttctg
    22021 agcatggtat ttttcatggt attaccaatt agcaggaaaa taagccattg aatataaaag
    22081 ataaaaatgt cttgtttaca atagagtggg tatcggagac gaagaaggac aaggtacatg
    22141 ctgaccgata ccaagctgcg caatctcaag cccagggaca aactctacaa agtgaatgac
    22201 cgggaaggtc tctatgtggg ggtcgcctca gaaaacggaa tctatggtca ctcccgtttt
    22261 tgcaacaccg attttgacga caagttggct tgcttgaatc tatccggcgt ctgaatggga
    22321 ttttattccc gcgcctcgat gagttccgcg cctgatgaac ctccagaaaa tatacggctt
    22381 caatgagcct ttccgtttta caggttcctc aacaggccgg tgggccgtta gtatcatcaa
    22441 tatcagtatt cgcaaaacca gatgaatgat tgtttaaact ggtgtatttc tgcctttatg
    22501 cttcgtaagt ttgctgtcgc gccgtcagtg cccaggctat tctggccagc ttgtttgcca
    22561 gagcacaggt gacgacaaag ttgcttttcc gacacaacaa ctccctgacc cagtcggcca
    22621 acttgccaga ctggtgttcc agtttttgta tgaataccct ggcacactga accaacaaag
    22681 ttcggatctt tttgttgccc cgcttgctaa tccctaacaa tgtcgtccga cctcccgtgc
    22741 tgtactgtcg gggtaccagc cctgttgccg ccgcaaagtc acggctgctg gcgtactgct
    22801 tcccgtcgcc aatctcagtt gaaatagtac tggcagtcag cgttccaacg cagggaatac
    22861 tcagcaagcg ctgtccaacc tcatcttcgt ccaactttcg tttcaactga gattccagat
    22921 ctttaatctg ctcaacaaga tagtgataat gctgttgtaa tttcagcagt aactggctga
    22981 gataaagagg caaactactg tcctcaagaa gggtactcag tcgactaata acggcagcac
    23041 ctcgcggaac gctgatacca aattccagca gaaaagcatg catctgatta gttgttttca
    23101 ccttatcctg aaccagggat tcacggacac gatgcagagc tcgcattgcc tgctgagatt
    23161 cggttctggg ctgcacgaaa cgcatagatg gacgtgatgc tgcttcacag atagcttcag
    23221 catcaacgaa gtcatttttg ttgcttttaa cgaatgggcg gacaaattgc ggtgatatca
    23281 gctttggaaa atgccctaac tcttccagct tgcgtgccat aaagtgagaa ccgccacagg
    23341 cttccatcgc gatggttgtt gccgggcatg tcgccagaaa ttcgattagc tttggtcggg
    23401 tgaatttttt acggtaaacg gccttcccac gatgatcctg acaatgaata tggaaagagt
    23461 tcttacccag atcgatacca ataagcgcaa tgttttccat gatggttctc cgaatgaaag
    23521 cctgtcctca gcatagtact gggaaggagg gagtgaccat ctcattaaat aaagcacgct
    23581 aagccggttg cagcggtcgt agcggcctga acttgcccgc gccgatcttg gcgctgctgc
    23641 gccagaggta atcgccggtg aggttgatgt gctcccaacc gagcggcgac aggtactgca
    23701 acagcgcgtc atcaacggca tggccgttgc cacgcagcgc gtgcgcagcc cgttccagat
    23761 agaccgtgtt ccacaacacg acggcagccg ttaccagatt gaggccgcta gcccggtagc
    23821 gctgctgctc gaaactgcgg tcgcggattt cacccaggcg gttgaaaaac actgccctgg
    23881 ccagcgcatt gcgcgcctcg cccttgttca ggccggcatg cacgcggcgg cgcagttcca
    23941 cgctttgcag ccagtccagg atgaacagcg tgcgctcgat gcggcccagc tcgcggagcg
    24001 ccacggccag gccgttctgg cgtgggtagc tgccgagctt tcggagcatc agggaggccg
    24061 tcaccgtgcc ctgcttgatc gaggtggcca gccgcaggat ttcgtcccaa tgggcgcgga
    24121 cgtgcttgat gttgagcgtg ccgccgatca tgggtttcag cgcgtcatag gcggcgtcgc
    24181 ccttcgggat gtagagcttg gtgtcgccca ggtcgcggat gcgcggcgcg aagcggaagc
    24241 ccaggaggtg catcagggcg aagacgtgat cggtgaagcc cgccgtgtcg gtgtaatgct
    24301 cctcgatccg caagtcggac tcgtggtaca gcaggccgtc gagcacgtag gtcgaatcgc
    24361 gcacgccgac gttcacgacc ttggtgtgaa atggcgcgta ctggtcagaa atgtgggtgt
    24421 agaacgtccg ccctgggctg ctcccgtatt tcgggttgat gtggccggtg ctctcggcct
    24481 tgctgccggt gcggaagttc tggccgtccg acgatgaggt ggtgccgtcg ccccagtgct
    24541 cggcgaaggg atggcggaac tgtgcgttga ccagatcggc cagcgccgcc ccgtaggttt
    24601 cgtcgcggat gtgccaggct tgcagccaag ccagcttggc gtaggtcgtg ccggggcaag
    24661 actccgccat cttggtcagg cccaggttga tcgcgtcggc gaggatcgtg gtcagcaaca
    24721 ggttcttgtc tttggccggg tcgcccgatt tcagatgcgc gaaatgccga gtgaagcccg
    24781 tccattcgtc cacctccagc agcagttcgg tgatcttgac gtgcggcagg atcattgccg
    24841 tctggtcgat cagcgcttgg gcggtgtcgg gtaccgccgc gtcgagcggc gtgatcttca
    24901 agcctgactc ggtgatgatg gcgtccggca gctcgttggc cgtcgccata cggttgacgg
    24961 tggcaagctg tgtttccagc agcgtcagcc ggtcgttcag gtaccggttg cagtcggtgg
    25021 ccacggccag cggcaattcg ctggcctgct tgaggctggc gaatttcgcg ggcggcacca
    25081 ggtagtcctc gaagtccttg aactggcgcg acccctgcac ccagatgtcg ccggaacgca
    25141 acgcgttctt catctccgac agcgcgcaca gttcgtagta gcgccggtcg atgccggtgt
    25201 cggtcatgac cagcttctgc cagcgcggct tgatgaactc ggtcggcgcg tcggcgggca
    25261 ccttgcgggc gttgtcgctg ttcatgccgc gcagcacctc gatggcgtcg agcacgtcct
    25321 tcgcggcggg agcggcccgc agctggcact gttgcaaagt tagcgatgag gcagcctttt
    25381 gtcttattca aaggccttac atttcaaaaa ctctgcttac caggcg
//
LOCUS       DAJVUY010000046        25417 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.046, whole genome shotgun sequence.
ACCESSION   DAJVUY010000046 DAJVUY010000000
VERSION     DAJVUY010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25417
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.046"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..184
                     /locus_tag="OQQ72_001695"
     CDS             <1..184
                     /locus_tag="OQQ72_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS2011459.1"
                     /translation="ACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPD
                     IGRQLSPDAWDDVSQE"
     gene            254..1030
                     /gene="yaaA"
                     /locus_tag="OQQ72_001696"
     CDS             254..1030
                     /gene="yaaA"
                     /locus_tag="OQQ72_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCS2011460.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(1183..1479)
                     /locus_tag="OQQ72_001697"
     CDS             complement(1183..1479)
                     /locus_tag="OQQ72_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS2011461.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGNRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(1693..2979)
                     /gene="thrC"
                     /locus_tag="OQQ72_001698"
     CDS             complement(1693..2979)
                     /gene="thrC"
                     /locus_tag="OQQ72_001698"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HCS2011462.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(2980..3912)
                     /gene="thrB"
                     /locus_tag="OQQ72_001699"
     CDS             complement(2980..3912)
                     /gene="thrB"
                     /locus_tag="OQQ72_001699"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HCS2011463.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(3914..6376)
                     /gene="thrA"
                     /locus_tag="OQQ72_001700"
     CDS             complement(3914..6376)
                     /gene="thrA"
                     /locus_tag="OQQ72_001700"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HCS2011464.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     misc_feature    complement(6401..6520)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00506"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Thr leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00506"
     gene            complement(6456..6521)
                     /gene="thrL"
                     /locus_tag="OQQ72_001701"
     CDS             complement(6456..6521)
                     /gene="thrL"
                     /locus_tag="OQQ72_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HCS2011465.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(6735..7421)
                     /locus_tag="OQQ72_001702"
     CDS             complement(6735..7421)
                     /locus_tag="OQQ72_001702"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS2011466.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(7821..7961)
                     /locus_tag="OQQ72_001703"
     CDS             complement(7821..7961)
                     /locus_tag="OQQ72_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011467.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            8057..8773
                     /gene="arcA"
                     /locus_tag="OQQ72_001704"
     CDS             8057..8773
                     /gene="arcA"
                     /locus_tag="OQQ72_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003621071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HCS2011468.1"
                     /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(8833..10185)
                     /gene="creD"
                     /locus_tag="OQQ72_001705"
     CDS             complement(8833..10185)
                     /gene="creD"
                     /locus_tag="OQQ72_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HCS2011469.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMPLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDWATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(10243..11667)
                     /gene="creC"
                     /locus_tag="OQQ72_001706"
     CDS             complement(10243..11667)
                     /gene="creC"
                     /locus_tag="OQQ72_001706"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HCS2011470.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(11667..12356)
                     /gene="creB"
                     /locus_tag="OQQ72_001707"
     CDS             complement(11667..12356)
                     /gene="creB"
                     /locus_tag="OQQ72_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HCS2011471.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(12369..12842)
                     /gene="creA"
                     /locus_tag="OQQ72_001708"
     CDS             complement(12369..12842)
                     /gene="creA"
                     /locus_tag="OQQ72_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HCS2011472.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            13053..13922
                     /gene="robA"
                     /locus_tag="OQQ72_001709"
     CDS             13053..13922
                     /gene="robA"
                     /locus_tag="OQQ72_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HCS2011473.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(13919..14566)
                     /gene="gpmB"
                     /locus_tag="OQQ72_001710"
     CDS             complement(13919..14566)
                     /gene="gpmB"
                     /locus_tag="OQQ72_001710"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HCS2011474.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            14618..15139
                     /gene="yjjX"
                     /locus_tag="OQQ72_001711"
     CDS             14618..15139
                     /gene="yjjX"
                     /locus_tag="OQQ72_001711"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HCS2011475.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(15224..15550)
                     /gene="trpR"
                     /locus_tag="OQQ72_001712"
     CDS             complement(15224..15550)
                     /gene="trpR"
                     /locus_tag="OQQ72_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HCS2011476.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(15640..17577)
                     /gene="sltY"
                     /locus_tag="OQQ72_001713"
     CDS             complement(15640..17577)
                     /gene="sltY"
                     /locus_tag="OQQ72_001713"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCS2011477.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            17788..19455
                     /gene="ettA"
                     /locus_tag="OQQ72_001714"
     CDS             17788..19455
                     /gene="ettA"
                     /locus_tag="OQQ72_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017145039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCS2011478.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(19762..20994)
                     /gene="nadR"
                     /locus_tag="OQQ72_001715"
     CDS             complement(19762..20994)
                     /gene="nadR"
                     /locus_tag="OQQ72_001715"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HCS2011479.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(21015..22397)
                     /gene="radA"
                     /locus_tag="OQQ72_001716"
     CDS             complement(21015..22397)
                     /gene="radA"
                     /locus_tag="OQQ72_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCS2011480.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(22446..23414)
                     /gene="serB"
                     /locus_tag="OQQ72_001717"
     CDS             complement(22446..23414)
                     /gene="serB"
                     /locus_tag="OQQ72_001717"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HCS2011481.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            23520..24071
                     /locus_tag="OQQ72_001718"
     CDS             23520..24071
                     /locus_tag="OQQ72_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011482.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRW
                     QQSPFLLTASKPVPEEEESEKKE"
     gene            24099..25115
                     /gene="lplA"
                     /locus_tag="OQQ72_001719"
     CDS             24099..25115
                     /gene="lplA"
                     /locus_tag="OQQ72_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HCS2011483.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
     gene            25147..25296
                     /locus_tag="OQQ72_001720"
     CDS             25147..25296
                     /locus_tag="OQQ72_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011484.1"
                     /translation="MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGIS
                     INSLK"
BASE COUNT         6106 a         7005 c         6310 g         5996 t
ORIGIN      
        1 ggcctgcatg gctattacca atttgaccgc cattttactg ctctcgcctg tggttcatac
       61 cattgccagt gattatctac gccagcgtaa actcggcgtg cgcccggtgt ttgatccgtt
      121 gcgttatccg gatatcggtc gccagctttc tccggacgcg tgggatgatg tttcgcagga
      181 gtaatcacaa ctatcgatca actcattctc tttttttgct aaagtcggca taaatttcct
      241 gcaaggactg gatatgctga ttcttatttc acctgcgaaa acgcttgatt accaaagccc
      301 gttgaccacc acgcgctata cgctgccgga gctgttagac aattcccagc agttgatcca
      361 tgaagcgcgg aaactgacgc ctccgcagat tagcacgctg atgcgcatca gcgacaaact
      421 ggcgggtatc aacgccgctc gctttcatga ctggcagcca gatttcacgc cggcgaatgc
      481 ccgccaggcg attctggcgt ttaaaggtga tgtctacacc ggcttgcagg ccgaaacctt
      541 cagcgaagac gatttcgatt ttgcccaaca gcatttgcga atgctttccg gcttgtatgg
      601 cgtactgcgc ccgctcgatt taatgcagcc ttatcgtctg gaaatgggga tccgtcttga
      661 gaatgcccga gggaaagatc tgtatcaatt ctggggagat atcatcacca acaagctgaa
      721 cgaggcgctc gcagcacaag gcgataatgt ggtgattaat ctggcgtcag atgagtattt
      781 taaatcggtg aagccgaaga aattgaatgc cgagattatc aagccggtgt tcctcgatga
      841 gaagaacggc aaatttaaga tcatcagctt ctacgctaag aaagcacgcg gtctgatgag
      901 tcgtttcatt attgaaaatc ggctgaccaa accagagcaa ctgactggtt ttaatagcga
      961 aggttacttc tttgatgaag cttcctccag caatggcgaa ctggtgttta aacgctacga
     1021 gcagcgttaa gtttgcagtc aatgccggat gcggcgtgaa cgccttatcc ggcctacaaa
     1081 agcatgcaga ttcaatatat tgcagaattc acgtaggcct gataagacgc gccagcgtcg
     1141 catcaggcgc tgaatgccgg attgttaccc ggcatttgtc atttagcggt gatgtttgcc
     1201 tggaccatga ccgccgtgat gatcatgagg agctttctta tggtggcgcg gcggtggcgg
     1261 cggtccgtgt gggtgccagc gattgcctcg ccattcataa tgttgtttcc accagccgtg
     1321 gtcgcgccag tgacctccat cccagtaata gccacgatta tcacgattgc ctatctgtaa
     1381 ttttactgac gggactaacg taatttccgc agcctgtgct gccatgggag cgaccagaac
     1441 cagggaaagt gcgagtacga tagattgcat ctttttcaca ggttactcct tttatcattg
     1501 cccgttatgg gtcgatatcc ggagattacg cgatgagaac gacggttgtt attctccgca
     1561 atcctaatct ctaagttacc gcatttattg agaatatctc ctttttccct gtcgtttttc
     1621 tccataattt cttcataaaa aagccgggct gcataaaagc aaacccggcc tgattgagat
     1681 aatgaataga ttttactgat gattcatcat caatttacgc aacgcagcaa aatcggcggg
     1741 cagattatgt gaaagcaagg gtaaatcagc acgttctgcc agctcttttg gcagatccaa
     1801 cgtttcaccg agaatcgctt ccacgctctc tttaaatttc gccggatgcg cggtgccgag
     1861 gaacaagcca tattcgcctg gattcaactg gtcacgcagc gcacgatacg ctacggcagc
     1921 gtgcggctcc gaggtgtagc ccagttcttt taactcacgc attgtctgtt gcgtggtttc
     1981 atcatccacg gctgcataac ccagctcttt cagttgccag attttgcggc ggaacaactc
     2041 ttccacacgc ggccagttgt tcggctgact cacgtccatc gcgttggata acgtcgcctg
     2101 agtcgctttg ggtgaccact gaccgtcgtg caggaaacgt ggcacggtat cgttcacgtt
     2161 ggtcgcagca ataaaacgtt tcaccggcag accgagtgac ttcgccagca gacccgccgt
     2221 caaatcgccg aagtttccgc ttggcaccga gacaaccagc tggttgcgcg cttcctgcgg
     2281 cagctgcgca actgcttcaa agtagtagca aatctgcgcc agcaaacggc tgatgttaat
     2341 cgagttagct gagtttaacc ccagcgccac tttcagctct tcatcatcaa acgcctgctt
     2401 caccagcgcc tgacaggcat cgaaatcgcc gtcgatggca acagtttcga tattgccgcc
     2461 caatgtacag aacagttttt cttgcagtgg actgattttg cctcgtggat agaggataac
     2521 cactttcaca ttcggtaaac cgtagaaagc atgagccact gccgctccgg tatcaccgga
     2581 ggtcgcggtc agaatggtca ctggcttatc gcccgcaata tgggtcagca tttgtgccat
     2641 aaagcgaccg ccgaaatctt taaatgccag cgttggcccg tggaacaatt ccagacaacc
     2701 gacatcgctt tcaacattgg cgaccggagc cgggaaggca aacgccgcgc gcacgcgctc
     2761 ttccaggatt tcctgcggga tttcatcacc aataaacgcc gagaggatct tcgcactgcg
     2821 ggtgacaaaa tccagcttca gcatctcatc aatttcagtc aggctgaatt ccggcaggtc
     2881 gtgcggaaaa aacagcccct gatttttgcc caacccctgg gttacggctt gcgcaaagct
     2941 gacctgctca ttgtgatctt tcagattgta gagtttcatt tagttttcca gtactcgtgc
     3001 gcccgccgta tccagccggc aaatatgaac aaaaccttcc tgattttgca ggtagttctt
     3061 acccaaccag tcggcaacgc gctgggcggt atccggcttg tcacacagag cgaacaaggt
     3121 cgggccggag ccggagatac cgctcgctac cgcgccgatt tccgcaaccg cctgccgcgc
     3181 ctgccggaag ccaggcagta accgttcacg gtagggttca gcgataacat ctttcatcag
     3241 cttcgcggca agctcaggct gacgggaata gcaggcgtga atgaagccag ccagatgtcg
     3301 cccgtgcgca atgcaatcct ggcggcgata ctgcgccggt aaaatagccc tggcttctgc
     3361 cgttgagact ttaatccccg gatacgccag cacccacagc cactcatcaa accctggcac
     3421 ttgctggctg atgatgtcgt tttcttcgat catcaactgc ataccaccaa gaaaacacgg
     3481 tgccacgttg tcgtaatgaa tgctgccgga gattcgtcct tccagctcgc ccatcaaagc
     3541 cagcaaacga gtgtcattaa gcggcttgcc acagtgttca ttcatcgcca tcagcgccgc
     3601 gaccaccgaa caggcgctgg agcctaagcc cgaaccgatt ggcatattct tttccagagt
     3661 catcgccact ggaatttgct tgccaagctc ctggcaaaaa cgctcccagc actgataaac
     3721 gatattttcc cgtggttctg acggcagctt atcggcaaag cgtccgaggt tgttgagact
     3781 gaatgtctct gccgcctcaa ccgtgactac atctccgagc aatgcaccat caacaggtgt
     3841 caccgccgcc ccgagcacat caaacccgac gctcatattg gcactggaag ccggggcata
     3901 aactttaacc atgtcagact cctaacttcc atgagagggt acgtagcaga tcggcaaaga
     3961 caccggcagc tgtaacgtca ttgcccgcac catatccgcg cagcaccaac ggcagcggct
     4021 gataatagtg gctataaaag gccagggcgt tttcgccatt tttcactttg aacagcggat
     4081 cattaccatc cacttcggca atcttcacgc ggcaggcacc atcttcatca atattgccaa
     4141 catagcgcaa aacttttcct tcatcacggg ccttcgccac gcgcgcggca aagagatcgt
     4201 cgagctgtga cagattcgcc ataaaagcgg caacatcacc ctcagcgtta aactctgcgg
     4261 gcagcacagg ttcaatttca atatccgcca gctccagttc acgtcccgtt tcacgagcga
     4321 gaatcaatag cttacgcgct acatccatac cagaaagatc atctcgcgga tccggttcgg
     4381 tataacccat ttcccgcgcc agagtagtcg cctcggagaa actcatgcct tcgtctaact
     4441 tgccgaagat ataagaaagc gaacctgaaa gaatgccgga gaacttcatc aattcatcac
     4501 cagcattgag cagattttgc aggttctcaa taaccggtaa tccagcccca acgttggtgt
     4561 catagaggaa tttacgccgc gatttttccg ccgcatgacg caacagatgg tagtaatcca
     4621 tcgacgaggt gttggccttt ttgttcggcg tgacaacgtg gaaaccttcg cgcaagaagt
     4681 cggcatattg atccgccact gcctggctgg aggtgcagtc aacaatgacc gggttcagca
     4741 gatgatattc tttcacgagg cgaattaagc gcccgagatt aaacggctct ttggcttgcg
     4801 ccagttcttc ctgccagttt tccagattta ggccatgcac attggtgagc agtgccttcg
     4861 agttggcaac accgcagaca cgtaagtcga tatgtttatt cttcagccag ctttgttgac
     4921 gcttcagttg ctccagcagc gcaccgccaa cgccaccgac gccaatcaca aacacttcga
     4981 taacctgatc ggtattgaac agcatctgat gagtaacgcg cacgccagtg gtcgcatcat
     5041 cgttatttac cacgacagag attgagcgtt cagaagatcc ctgagcaatg gcgacaatgt
     5101 tgatattggc gcgggccagc gcggcaaaga atttcgccga gatcccacgc aaggtgcgca
     5161 taccatcacc taccaccgag ataatggcca gccgttccgt caccgccagc ggctccagta
     5221 agccttcttt cagttccagg tagaactctt cctgcattgc ccgttcagct cgcacacagt
     5281 cgctttgtgg aacgcagaaa ctgatactgt attcggaaga tgattgcgta atcagcacca
     5341 cggaaatacg ggcgcgtgac attgcagcaa agacgcgcgc cgccatgccg accattcctt
     5401 tcatccccgg accagaaacg ctgaacattg ccatattatt cagattggaa atgcctttga
     5461 ccggtaattc gtcttcatca cggctggcac caatgagcgt acctggtgct tgaggatttc
     5521 cggtattttt aatcaggcaa gggatctgga actgggcgat gggggtaatg gtgcgggggt
     5581 gaagaacttt agcgccgaag taggaaagct ccatcgcttc ctggtaggac atcgacttca
     5641 acaacctcgc atcgggcacc tgacgcgggt cgcaggtata gaccccgtca acgtccgtcc
     5701 aaatctcgca acaatcggcg cgtaaacagg cagccagcac cgccgcggag tagtcggaac
     5761 cgttacgtcc aagtaccacc agttcgcctt tttcattacc ggaggtgaaa cctgccatca
     5821 acaccatgtg atcagccgga atgcggcttg ccgcaatacg gcgggtggac tcagcaatat
     5881 cgacggtaga ttcgaggtaa tgccccactg ccagcagttt ttcgaccgga tcgataacgg
     5941 taacgttgtg accacgagct tctaacacgc cggccataat ggcgatcgac attttctcgc
     6001 cacggcaaat cagcgcagcg ttgatgctat ccgggcactg ccccaacaaa ctaatgccat
     6061 gcaggacatg ttttatttgg gcaaattcct gatcgacgaa agttttcaat tgcgccagcg
     6121 ggaaccccgg ctgggcggcg gcgagtcccg tcaaaagttc ggcaaaaata cgttcggcat
     6181 cgctgatatt gggtaaagca tcctggccgc taatggtttt ttcaatcatc gccaccaggt
     6241 ggttggtgat tttggcgggg gcagagagga cggtggccac ctgcccctgc ctggcattgc
     6301 tttccagaat atcggcaaca cgcagaaaac gttctgcatt tgccactgat gtaccgccga
     6361 acttcaacac tcgcatggtt gttacctcgt tacctttggt cgaaaaaaag cccgcactgt
     6421 caggtgcggg cttttttctg tgtttcctgt acgcgtcagc ccgcaccgtt acctgtggta
     6481 atggtgatgg tggtggtaat ggtggtgcta atgcgtttca tggatattgt gtactctgta
     6541 atttttatct gtctgtgcgc tatgcctata ttggttaaag tatttagtga cctaagtcaa
     6601 taaaatttta atttactcac ggcaggtaac cagttcagaa actgctatca gacactcttt
     6661 ttttaatcca cacagagaca tattgcccgt tgcagtcaga atgaaaagct gaaaaatact
     6721 tactaaggcg ttttttattt ggtgatattt ttttcaatat catgcagcaa acggtgcaac
     6781 attgccgtgt ctcgttgctc taaaagcccc aggcgttgtt gtaaccagtc gaccagtttt
     6841 atgtcatctg ccactgccag agtcgtcagc aatgccatga ctcgttcgcg taaagcttgc
     6901 agttgatgtt ggtctgccgt tgtgtcactt ttcgtcggtt gttgtattaa tgttgctaat
     6961 tgatagcaat agaccatcac cgcctgcccc agattgagcg aaggataatc cgccaccatc
     7021 ggcacaccag taagaacgtc agccaacgct aactcttcgt tagtcagccc ggaatcttcg
     7081 cgaccaaaca ccagcgcggc atggctcatc catgaagatt tttcctctaa cagcagcacc
     7141 agttctactg gcgtggcgta gtaatgatat ttcgcccgac tgcgcgcagt ggtggcgaca
     7201 gtgaaatcga catcgtgtaa cgattcaacc agtgtcggga aaactttaat attatcaata
     7261 atatcaccag atccatgtgc gacccagcga gtggctggct ccagatgtgc ctgactatcg
     7321 acaatccgca gttcgctaaa acccatcgtt ttcattgccc gcgccgctgc cccaatattt
     7381 tctgctctgg cgggtgcgac cagaataatc gttatacgca tattgccact cttcttgacc
     7441 aaatgaccgc gaacagggtg atcactgtca acttattaca cggtgcgaat ttacaaatcc
     7501 ttaacgtaag tcgcagaaaa agccctttac ttatcttaag taaggctaaa ctatttcctg
     7561 actgtactaa cggttgaatt gttaaaaaat gctacatatc cttctgttta cttaggataa
     7621 ttttataaaa aataaatctc gacaattgga ttcaccacgt ttattagttg tatgatgcaa
     7681 ctagttggat tattaaaata atgtgacgaa agctagcatt tagatacgat gatttcatca
     7741 aactgttaac gtgctacaat tgaacttgat atatgtcaac gaagcgtagt tttattgggt
     7801 gtccggcccc tcttagcctg ttatgttgct gttaaaatgg ttaggatgac agccgttttt
     7861 gacactgtcg ggtcctgagg gaaagtaccc acgaccaagc taatgatgtt gttgacgttg
     7921 atggaaagtg catcaagaac gcaattacgt actttagtca tgttacgccg atcatgttaa
     7981 tttgcagcat gcatcaggca ggtcagggac ttttgtactt cctgtttcga tttagttggc
     8041 aatttaggta gcaaacatgc agaccccgca cattcttatc gttgaagacg agttggtaac
     8101 acgcaacacg ttgaaaagta ttttcgaagc ggaaggctat gatgttttcg aagcgacaga
     8161 tggcgcggaa atgcatcaga tcctctctga atatgacatc aacctggtga tcatggatat
     8221 caatctgccg ggtaagaacg gtcttctgtt agcgcgtgaa ctgcgcgagc aggcgaatgt
     8281 tgcgttgatg ttcctgactg gccgtgacaa cgaagtcgat aaaattctcg gcctcgaaat
     8341 cggtgcagat gactacatca ccaaaccgtt caacccgcgt gaactgacga ttcgtgcacg
     8401 caacctgctg tcccgtacca tgaatctggg tactgtcagc gaagaacgtc gtagcgttga
     8461 aagctacaag ttcaatggtt gggaactgga catcaacagc cgttcgttga tcggccctga
     8521 tggcgagcag tacaagctgc cgcgcagcga gttccgcgcc atgcttcact tctgtgaaaa
     8581 cccaggcaaa attcagtctc gtgctgaact gctgaagaaa atgaccggcc gtgagctgaa
     8641 accacacgac cgtactgtag acgtgacgat ccgccgtatt cgtaaacatt tcgaatctac
     8701 gccggatacg ccggaaatca tcgccaccat ccacggtgaa ggttatcgct tctgtggtga
     8761 tctggaagat taatcggctt taccaccgtc aaaaaaaacg gcgcttttta gcgccgtttt
     8821 tatttttcaa ccttatttcc agatacgtaa ttgatcgtcc attgtaactt ctttactggc
     8881 tttcattttc ggcagtgaaa acgcatacca gtcgatatta cgagtcacaa acatcatgcc
     8941 ggccagcgcc accaccagca cactggttcc caacaacagc gcgctatcgg cagagttgag
     9001 cagtccccac atcacaccat ccagcaacaa cagcgcgagg gtaaacaaca tgctgttgcg
     9061 ccagcctttc aataccgcct gcaaataaat accgttcatt aacgccccaa tcagactggc
     9121 gattatccat gccacggtaa aaccgatatg ttcagaaagc gccagcaaga gcaaataaaa
     9181 catcaccaat gaaagcccca ccagcaaata ttgcattggg tgtaaacgtt gcgcggtgag
     9241 cgtttcaaaa acaaagaacg ccataaaagt cagtgcaatc agcagaatgg cgtacttagt
     9301 cgcccagtcc gttaattggt attgatcggc tggcgtcgtc actgcgacgc taaacgcggg
     9361 gaagttttcc cagccggtat cattgcctga agcaaaacgc tcaccgagat tattagcaaa
     9421 ccagctgctt tgccattgcg cctgaaaacc tgactcgcta acttcccgtt tggctggtag
     9481 aaaatcacct aaaaaactgg gatgcggcca gttgctggtt aagggcattt cgctattacg
     9541 cccggcaggc accacagaaa gatcgccggt accgcttaaa ttcagtgcca tattcagctg
     9601 caggttctgc ttccgccagt ccccttcggg taaagggata tgcacgccct gcccgccttg
     9661 ctctaacccg gtaccgggtt caatggtcag tgccgttccg ttaacttcag gcgctttcac
     9721 cacaccaata ccacgcgcat ccccgacgct aatcacaata aagggcttgc ctaagatgat
     9781 atttggcgcg ttgagctcgc taagacgcga aacatcgaaa tcggctttta gcgttaaatc
     9841 actgtgccag acctgaccgg tataaatccc tatcttgcgt tcttccacgt tctgattgcc
     9901 atcaaccatc aatgactcag gtaaccaaaa atggataaaa cttcgtttcc gctccacggt
     9961 tttatcctct tcctgcaccg tataaagctc ggtcacagga atagcgataa gcggcccaac
    10021 gagtttttgc ggcccgctgg tactttggcg aatcgcatct tccacatcgc tacggtaatc
    10081 ggcacgttcg acaatcactt gccgaatcag cattatcgga atcaacaaca gcaatactgc
    10141 accaaacaag gtggtcattt tccagaacag gggggatttc aacatagtct tctcctttgc
    10201 aatggcagca ggatacgaag gctatgtggg aagaatttga agctatgtga agtgacggtg
    10261 aagtcgaagc gaggccagca cgccaccttc ctgcacgttg cgcagcgtga cttcgccgtt
    10321 aaacaaacgg gcgacctcac tgacgaacgc caaccccaga ccgctgcttt tttgcccatt
    10381 tgcacgcggc aaagagtaaa agcgttcaaa aatacgtgac agcgcgtagt caggaatacc
    10441 actaccggta tccagcacct taagggcgac gtgttcctga tccacttcgg cgcttagcgt
    10501 tatgcgaccg ctctcggggg taaaatcgat ggcgttatcc agtaaattcc ccagcgcctg
    10561 ctccagtaac gccggttcag cagcaacatt aacctcagtg ggcataacat gtagagtgat
    10621 gtttttttct gccaactgca cggtgcgcgc ttcgctgacg cggcgaaata atgccgccac
    10681 atcaacaaca gtcagaacga cttcctgacg attctccagt cttgcctggc gtagtaacgt
    10741 ttctaccaat gcctgcatac gcgcattttg cgtcagaatg ttgtcggtaa aacgagccac
    10801 cacttccggt ggcggacctt cgcgtaaaat ttccgccgcg ccacgaatcg ccgccagtgg
    10861 gctttttagc tcatgggtta acgcataaac atactgctca atatagtttt tcccttccag
    10921 cttcacgcgc atactttcca gcgcctgcgc aagcttacgc aactcgctac tgccgagttc
    10981 aggaagagga acgggcttat tgtcagtgac ggaatcggca tagcgagtga gccgggcaat
    11041 ggagcggttg atccaccaaa ccatgcctgc gccaatcacc agtgcaatcc ccagcaaaat
    11101 ggcgctggcc cataaaattc gccgctcgct acgcttaatg accggagcca tcgccgcgtt
    11161 cggtttgcct acgctcaaaa cgccaataag ccgcgagccg tccataatcg gcgcggcaac
    11221 atacatcacc gaactttcgg gatcggcagg attttgcaac gtgctgcgcg caccatactg
    11281 accacgcaac gttagccaga cgtcattcca gcgcgaataa tcctgcccaa cggctttatt
    11341 tgccgaatcg aacaatactt taccctgcga atcggtcata tagacatgat attcattgcg
    11401 cactttgtta atgccaccga tattggcgcg aaacggacga tgttgtagct gattaaacgc
    11461 ctgcgccagt tgcccatgcg ttgggtcccc agagagcaaa tcgggacgcg ccagctccgc
    11521 cagcaacgtt gcggtgtcga tcaacgtccc ctccgttgct cttcgcacgc ccggtttaac
    11581 ttctttgaca aaaatagcca gtacgaacca ggccgccacc gccaccagta aaaaatagcc
    11641 cagcagcaac cgcatgccga tacgcattac aggcccctca ggctatatcc catgccgcga
    11701 tgagtattaa tcggtgaaag atcggggttg atggcacgca gcttggcatg caacgtttta
    11761 atgtgggtat caacggtgcg atcgtaggtg tcctgcgcat cttcccacac gctatccatc
    11821 agttgctggc gggaccagac gcggcctggc gacttgagta acgtcttcag caataaaaac
    11881 tcataccgcg tcagcgttaa tggcgtgtca aaccagctga tctgcgccgc gggttcattc
    11941 aattcaaaat gaccaatacg gatgacggga gacggcgacg agaacttctt cacccgacgc
    12001 agtaaggtgc gcaccctggc gcacacttcg cggggtgaaa acggtttagc cacatagtcg
    12061 tcagcgccaa tttccagccc aagcaggcga tcgacctctt cacttcgggc cgtcaggaac
    12121 agtacaggta acgccggatg gagcgccagt aactggctgc acaattcaaa gccgctgata
    12181 tcaggcaaac caacgtcgag aatcatgacg tcgggaacca gctggcgagc tttatccagc
    12241 accggcaagc ctcgctcaaa gacctcgacg gcaaaacctt cctgctgcaa catgtagacc
    12301 agcgtgtcgg ctatcccttg ctcatcttcc actaaccaga ccgtttcccg ttgtataaat
    12361 cgcctctgtt attgccgcca cggcatgaca ggaaccgcgc taatcgcgtt tttcggcgaa
    12421 ccttctacaa ctttgtcgga gtaagccaga taagcgagcg cgttgcgttt ggcgtcataa
    12481 aagcgcacga cctgtaacga cttaaagacc agggacgtgc gttttttgaa tactacctcg
    12541 ccctgagctt tgccgttttt aatacgatcc gacagttcaa tcggcccgac ttgctgacaa
    12601 gaaatagccg catcggaggt atcttccgcc agacccaatc cccctttaat accacctgtt
    12661 ttcgcccggc tcacataaca ggtgacattt ttcacatcgg gatcgtcaaa ggcttccaca
    12721 acaattttgt gatccgggcc gatcatttta aatacggtgt cgaccgaacc aatctcttct
    12781 gcatgagcca atggccccag cattatcagg cttaaagaca ggatcaaatg cttgtatttc
    12841 atattgttac catttttatc tattacacga gcaattagtt cgtcacggta aataacatat
    12901 tgattaagaa caaaatctca attcttttat ttccgtcaag ccctaaaaca tactctacta
    12961 agaaaaaaac actgaatgct aaaacagcaa aaaatgctat tatccaatta cctgatgtca
    13021 ggtgctcgtt gttgaaagga tgaggatatt ttatggatca ggccggcatt attcgcgacc
    13081 ttttaatctg gctggaaggt catctggatc agcccctgtc gctcgacaat gtagcggcga
    13141 aagcaggtta ttccaagtgg cacttacaga gaatgtttaa agatgtcact ggccatgcta
    13201 ttggcgcgta tattcgtgct cgtcgtttgt cgaaatcggc ggtcgcacta cgcctgactg
    13261 cgcgtccgat tctggacatc gcgctgcaat accgcttcga ctctcaacag acatttaccc
    13321 gcgcattcaa gaagcagttt gcccagactc ctgcacttta ccgccgttct cctgaatgga
    13381 gcgcctttgg tattcgcccg ccgctacgtc tgggtgaatt cacaatgcca gagcacaaat
    13441 ttgtcaccct ggaagatacg ccgctgattg gtgttaccca gagctactcc tgttcgctgg
    13501 agcaaatctc tgatttccgc catgaaatgc gttatcagtt ctggcacgat tttctcggca
    13561 acgcgccgac cattccgcca gtgctctacg gcctgaatga aacgcgtccg agtcaggata
    13621 aagacgacga acaagaggta ttctatacca ccgcgttagc ccaggatcag gcagatggct
    13681 atgtactgac ggggcatccg gtgatgctgc agggcggcga atatgtgatg tttacctatg
    13741 aaggtctggg aaccggcgtg caggagttta tcctgacggt atacggaacg tgcatgccaa
    13801 tgctcaacct gacgcgccgt aaaggtcagg atattgagcg atactacccg gcagaagacg
    13861 ccaaagcggg agatcgccca attaatctgc gctgtgaact gctgattcct atccgccgtt
    13921 aacgctgcag ctcatctaat gcaggggcgt ccagatgcga gatgtcccct gcggtttcaa
    13981 cgacccagcc agacgccagc cacaggcttt cctgataatc cacgcgcgaa atagaacagt
    14041 tacgcagacg taagcggcgc gctgcccatg ctggtaatcc gagaatcgta ctcaccagac
    14101 atcccagtgc aataccatgg ctcaccagca gcggtcggct tccctgcggt aagtcccggc
    14161 aagattccag tgccgcattg acgcgatcgc tgagctcctg cattgactcg ccttcaggaa
    14221 tacgcccgtc aacggtgcca ttgaccagct gccgacgcca gttctcttct tcttcggtca
    14281 gagaatcgat atgtcttttt tccagcacac ccatgtttaa ttcacgcagg cgagaatcaa
    14341 agatgatgtc acagccgcag gcctgggcga tgatttccgc cgtacgccgg gtgcgtccta
    14401 aatcgctact gataatatgc gtaatgccaa gctctttggc acgggttgcc acctgcatcg
    14461 cctgttgctc acctttggcg gtcagcgggc tgtcagactg gccctgaata cgtcgctcgg
    14521 cgttccactg cgtttcaccg tggcggacta ggtatacctg taacatgctt tttttccgta
    14581 tactgctgta acgttaattt tctgagtaat gctgattatg caccaagttg tctgtgcgac
    14641 caccaatccc gctaaaattc aggccattct gcaggcattt cacgagatct tcggcgaagg
    14701 atcctgccat attgcatccg ttgccgtcga gagcggtgta ccggaacagc cctttggcag
    14761 tgaggaaacg cgcgctggcg cacgaaatcg ggtagcaaat gcccgccgtt tacttccaga
    14821 ggctgatttt tgggtggcga ttgaagctgg catcgatggt gacagcactt tcagttgggt
    14881 ggtgattgaa aacaccagcc agcgcggcga ggcgcgttcg gctactttgc cgttacctgc
    14941 ggtgattctg cagaaagtgc gtgaaggtga ggcgcttggt cccgtgatgt cgcgttatac
    15001 cggtattgat gagattggtc gtaaggaagg ggcgatcggc gtgtttaccg ccgggaaact
    15061 cactcgcgcc agcgtctatc accaggcggt gatcctggcg ctgagtccgt ttcacaatgc
    15121 cgtgtatcag gcattgtagg acggataagg cgttcacgcc gcatccggca ttcggtgcac
    15181 gatgcctgat gcgacgctgc cgcgtcttat caggcctaca aaatcaatcg cttttcagca
    15241 acacctcttc cagccactgg cgcagctcca cgggcgcggc tttcaggctg ttagatccac
    15301 gcgtaatcgt cgcgatgccc gcgccgagtt cattttttaa ctcacgctga ctcatttcgc
    15361 cacgcaacag ctcttcgaca atacgcacgc gagtccccaa cgcttcgcgc tcatctggcg
    15421 tcagcatcag gtttaacaac ggtaaatgga gatcgttttg gtaggcattc ttaagcaggt
    15481 cgacaaaacg taaccactcc tggtgacgct gttctgccat cgctgctgaa tagggtgatt
    15541 gttgggccat aatatgtcgc cattgttagc gggggaagca aaatgcctcc cccggttgta
    15601 ctcgctaaag agtacgatag catatcataa acgtgcggat cagtaacgac gtccccattc
    15661 cgtggcgctc atcaacgtcg gtttatcccc catgaaataa cggtagtaag cgtcataagc
    15721 cagcacgttc ttcacataac cgcgcgtctc ggagaacgga atactctcga caaatgccac
    15781 agcgtcgata cgcccggcgc tgttgccaag ccaggttcgc acccgtccag gtccggcgtt
    15841 ataagctgct gaggagaaaa tacggttatt gccaaactgc tgataaacat attgcaggta
    15901 actggtgcca atgttgatat tcgtttccgg atccagcaat tgcccagggc tgctataacc
    15961 aggaatagag aacatcttca ccgtatgggt cgctgtacca ggcataatct gcatcaggcc
    16021 gctggcccct accggtgatt tcactttcgg attccaggcg ctctcctgac gggcaatcgc
    16081 catcgcatag ctttgcggga tctctttccc actggtgtaa cgtttgaaaa gatcgttgta
    16141 agccagcggg aatcgctctt ccagatgatc ccaaagcttc ccggcgatcg ttgcctgaac
    16201 gctaagatcc caccattggt tattgaaagc ataccgagcc agttgagcct gctctgtttt
    16261 tgacttgctc ttcaccagat tggcccactc gctacgcgcg gtgttatcga gattccagta
    16321 catcaactcg cgcacgcgcg ccatctccgg cccctgagtc agggcgctgt caacattctg
    16381 cggcgcttta tcaatcttca gctcatactc ttctccgatg cgttgtgctg caaccatcgg
    16441 gtagaaacca cgctgttgca tgagttgatg caaaatctct ttcgcttcag cttcacgtcc
    16501 gcgttccagc aataaatccg cctgccagta acgccattca tctttctctt ttgcttccat
    16561 cggcagacgc gccagccagg tattcaggcc gcgacgatcg ccggtgccaa gtgccattcg
    16621 cacacggcgt tcaatcaacg acgtggattg cgagcgcata atggcgtcat cgcgccattt
    16681 cgcctgctcg tcggtgacat cgttgcccat caaacgccag gcgacgatat cgcgcagctc
    16741 ctgaatctga tcttcattaa gctgctgcgc ctgggcaagc gacgggatca tcagccgtgc
    16801 attttcagca tcctgccgcg ccacactggc aaacgccacc gctgccattt gacgggtaaa
    16861 atcggtcgct ccggttgtac gcgcgaaggt cagtaccgta ttagggttgt tcgccagtga
    16921 aatgattgcc gaggcgatag tctggtaatc ggcaggcatc tgccctgcca gcactgttac
    16981 caggccagtg ttacccgctt tcatcgccag acggatacgc tctaaatacg ccagcggatc
    17041 ttgtttacct gacgcacgcc agacgctaaa taacttgtca caggcgttag gctggctctt
    17101 gccggttagc cacagctctt tcgccccttg ccaggcttct tcactctgcc cggtgttcca
    17161 tttcgcatag tagtaattac attgcgcttc ggtagttccg ggcttttccg ggctaaaggc
    17221 taacaagcca cgccagtctt cacgccgcgc cagttcattg acgaaacgag attgcagcgt
    17281 gcgagcggga ggaagcgtgg ggttagcgcg aacaaagtta gtgaccgtca ccgccggttg
    17341 attcatcaga tcatcggtga tctggcggta ttccaggtag ggataaagcg gataatcctt
    17401 cagtccaggc atcatttgtt cgaccacatc catttgtcga ttatcccagg cctgcttgat
    17461 ttgcgcgtaa cggctacgct gctcatccag tgagtcggct cgcgccacgc tgctgaccgt
    17521 cagcagacag acaccggcag ccaacagccg ccaggtaact tgtttggctt tttccacaag
    17581 cgcatcctct aagtgtaaat acatcaatgc agcgtcatgc cgcgtaatag atttatgcta
    17641 accagtcatt gccgtttacg ccacgttacg gacacttttt tacttttact gcgaaggtga
    17701 tcgaccaact gggattaggc ggggaaaaag gctacacttc gcctttgaaa actcatcatc
    17761 acgataaaca tagaggcgaa gtccaacgtg gctcaattcg tttataccat gcatcgtgtc
    17821 ggcaaagttg ttccgccgaa acgtcatatt ttgaaaaaca tctctctgag tttcttccct
    17881 ggggcaaaaa ttggtgtcct gggtctgaac ggcgcgggta agtctaccct gctgcgcatt
    17941 atggcaggca ttgataaaga catcgaaggt gaagcgcgtc cgcagccaga catcaagatt
    18001 ggttacctgc cgcaggaacc gcagctgaac ccggaacaca ccgtgcgtga gtccattgaa
    18061 gaagcggttt ctgaagtggt taacgccctg aaacgcctgg atgaagtgta tgcgctgtac
    18121 gccgatccgg atgccgattt tgacaagctg gccgctgaac aaggccgtct ggaagagatc
    18181 attcaggctc acgacggtca taacctgaac gtacagctgg agcgtgcggc ggatgcgcta
    18241 cgtctgccgg actgggacgc gaaaatcgct aacctctccg gtggtgagcg tcgtcgcgta
    18301 gcgttgtgcc gcctgctgct ggaaaaacca gacatgctgc tgctcgacga accgaccaac
    18361 cacctggatg ccgaatccgt ggcctggctg gaacgcttcc tgcacgactt cgagggcacc
    18421 gtggtggcga ttacccacga ccgttacttc ctcgataacg ttgcaggctg gatcctcgaa
    18481 cttgaccgcg gtgaaggtat tccgtgggaa ggcaactact cctcctggct ggagcagaaa
    18541 gatcagcgcc tggcgcagga agcttcacaa gaagcggcgc gtcgtaagtc gatcgagaaa
    18601 gagctggagt gggtacgtca gggaactaaa ggccgccagt cgaaaggtaa agcacgtctg
    18661 gcacgctttg aagagctgaa cagcaccgaa tatcagaaac gtaacgaaac caacgaactg
    18721 tttattccac ctggaccgcg tctgggcgat aaagtgctgg aagtcagcaa cctgcgtaaa
    18781 tcctacggtg atcgcctgct gattgatgac ctgagcttct cgatcccgaa aggggcaatc
    18841 gtcgggatca tcggtccgaa cggcgcgggt aaatcgaccc tgttccgtat gatctctggt
    18901 caggaacagc cggacagcgg caccatcact ttaggtgaaa cggtgaaact ggcatcggtt
    18961 gatcagttcc gtgactcaat ggataacagc aaaaccgttt gggaagaagt ttccggcggg
    19021 ctggatatta tgaagatcgg caacaccgag atgccaagcc gcgcctacgt tggccgcttt
    19081 aactttaaag gggttgatca gggtaaacgc gttggtgaac tttccggtgg tgagcgcggt
    19141 cgtctgcatc tggcgaagct gctgcaggtt ggcggcaaca tgctgctgct cgacgaacca
    19201 accaacgacc tggatatcga aaccctgcgc gcgctggaaa acgccctgct ggagttcccg
    19261 ggctgtgcga tggttatctc gcacgaccgt tggttcctcg accgtatcgc cacgcacatc
    19321 ctggactacc aggatgaagg taaagttgag ttcttcgaag gtaactttac tgagtacgaa
    19381 gagtacaaga aacgcacgct gggcgcagac gcactggagc cgaagcgtat caagtacaag
    19441 cgtattgcga agtaatgcgt aaaatgccgg atgcggcgtg aacgccttat ccggcctaca
    19501 aaccaagaaa tttcaatacg ttgtgaatct ccaggcctga taagacgcgg taagcgtcgc
    19561 atcaggcatt gagcaccgaa tgccggatac ggcgtgaacg ccttttccgg cctacaatag
    19621 ccttagtatc cgcaatttcg tagcgggtca cccgtgctga ttcttttaaa ccttgtttaa
    19681 tctcgacagc ctcttccaga gaggttttca actcatcaaa aaacctattt tatacctcgc
    19741 ctttgagccg tttcatcgcg gttatctctg ctcccccatc atctcccgca ccagctccac
    19801 gcagcgcagg aaacggctgt cataatcgtc ctcttcaacc cgcacgaatt cgatattgtt
    19861 ctcttccagc atctccacca gcaagttctg gaactctttg cgatccaccg aactgccgag
    19921 gctgcgtaaa ccatccgcca cccacggcgt gttgttctcc agcaggatca ccagatcgaa
    19981 acggtattca tcaatcaacg cctgtacgaa cggatgctca cgcccttcgt actttttgca
    20041 gaacgcctgg gtagtgacaa aatcagtgtc aataaacgcc actttattgg catatttcac
    20101 tgcaaaatca atgtattgtg cgtggcccag cgcgatttta tcgtaatcgg aatactgcaa
    20161 tgcgatctca tcaccgccga ggtgtgaaaa gacataatcg cgaccatatt cccacgcact
    20221 ggtggtattg aagatattgg caagtttgtt taccagggtg gatttaccgc tcgactcgcc
    20281 accaaggatc gccacggtac gtacaaagaa cggcttcact tccgtaggaa tatattccca
    20341 gtagcggaac gggttttcgc ggatctgcgc accgctgata ctcataaagg tacgtttcgg
    20401 atcgaccagc accgtatcga tccccagatg ttccatatac tgtggcgcat cggcttcttc
    20461 cgaggtgtag atcaggtccg gctgaatccc cttttcagcc ataaactttt tgatgccgtt
    20521 gctccacaca tcccagccgt gcggatacgg ctccatgccc tcctcgttga aagcatgaat
    20581 gcgaatattt ttctgatatt taaaagtttg taataaccag cgcagacgat ccggcaccgt
    20641 gggctgctgc gacatggcgc tgtcttcaaa caacgcgcgg tcgcgggtat cgtcaaaacc
    20701 cataatgata tgcagctcgt caacctggct acaggcgcgc tggataaggt agatatgtcc
    20761 ggtatgcagc gggtagaact taccgaatac gacaccaatg gttttcttct gtcggggaaa
    20821 ttcaagcccc aaaaaacggt gcaacgcctc cagcttttgc gcgctggggc ttttaatttt
    20881 ggcattcagt aactggctta aatacccttt ggtcataccg ctggcatcag ctacctgctg
    20941 tagcgtgcag ccctgttgct tgatggcagt tttcaggtaa tcaaatgacg acatatctcc
    21001 ctccgtatct ctcattataa gtcgtcgaac acgctaagcg cgtcggagag ttttttaacg
    21061 ccaaaaatct gcatcccttc cggcgctttt ttcggtacgt tagccgccgg aacaatcgcc
    21121 cggcgaaaac cgtgtttcgc cgcttctgaa attcgttcct gaccgctggg caccgggcgg
    21181 atctcccctg ccagcccgac ttcaccaaac accaccagat cctgtggcag cggtctgtca
    21241 cgcaggctgg aaaccatcgc cagcagtaac gctaaatcgg cactggtttc ggttaccttc
    21301 acgccgccga ccacgttcac aaatacatcc tgatcggcca tttgcagacc accgtgacgg
    21361 tgcaagacag ccagcaggat tgccagacgg ttttgttcca gccccactgc cacgcggcgc
    21421 ggattcgcca tcatcgagtg atcgaccagc gcctgaatct ccaccagcaa cggacgcgtt
    21481 ccttcccaca ccaccatcac ggagctgccg gaggtcactt catctccgcg acttaagaaa
    21541 attgccgaag ggttgctgac ttcacgcagc ccctgttcgg tcatcgcgaa gacgcccagc
    21601 tcattcaccg cgccgaagcg gtttttatgg ctgcgcaagg tgcgaaaacg ggagtcggca
    21661 tcaccatcca gaagcaccga acagtcgata cagtgttcca gcactttagg gccagccagc
    21721 gagccatctt tggttacgtg cccaaccatg acaatcgcca caccgcgcgt tttggcgaag
    21781 cgcgtcagat aagccgccgt ttcacgcacc tgcgccacgc taccaggcga tgattgtaca
    21841 tccgccatat gcatcacctg gatcgagtca attaccatca gtttcggttg ctcttcttcg
    21901 gcaatcaggc agatctgttc gatgctggtt tccgacaaca tattgagatt gtcagtcggc
    21961 aggccaaggc gatgagcgcg cattgccacc tgttgcagcg actcttcgcc agtgacatac
    22021 agcgttttca tctgctgggc cagtttgcac agcgtttgca gtagcagcgt ggatttcccc
    22081 gcacctgggt taccgccaat cagaatggcg cttcccggca ccacgccgcc gcctagtacg
    22141 cggtcgaact ctttaaatcc ggtggaaaaa cgcggcagct cttcaaggct gatatcggag
    22201 agtttctgga cttttgccac cccggcgcta ccggcatagc cgctgagacg ctcgttacgc
    22261 gccaccgttg gcgacgcagc aagacgcacc tcggtgatgg tgttccaggc atgacaggca
    22321 ctgcactgcc cctgccagcg cggataatcg gccccgcatt cattacaaac aaaggcgcgt
    22381 tttggagctt ttgccacggt gtacctcgtt aatgctgtgc cgcccgcagg atggcgggcg
    22441 agcaattact tctgattcag gctgccagag aggatgcaga atacccccat caggtcagcg
    22501 tgacggatgg tgacttccgc cttttcattc acttttggct tggcatggta ggcaatcccc
    22561 agccctgctg ctttgatcat cggcaggtca ttagctccat cgccaatcgc cacggtctgc
    22621 gccagcggga tttcatactc ctgcgcgagg cgagtcaaag ttttcgcttt gtactgcgcg
    22681 tctacgatgt cgccgatcac attgccggta aatttaccgt ccatgatctc cagttcattg
    22741 gctaccacgg cggtcaggcg cagcttgtcg cgcagatatt cagcaaagaa agtaaagccg
    22801 ccggaggcaa tcgccacttt ccagcccagc gtttccagct tgagcaccag ttgcgttaag
    22861 cctggcatca gcggcagatt ttcacgcacc tgttgcagaa tattggcgtc agcgcctttc
    22921 agcgtcgcca cacggctgcg caggctggcg gtaaaatcga gttcgccgcg catcgcccgt
    22981 tcggttactt ccgccaccat ctcgcccgtt ccggccagtt tggcaatttc atcaatacat
    23041 tcaatctgga tggcggtgga atccatgtcc atcaccagca aacccggcgt gcgcaggtgc
    23101 gggattttcc ccagcggggc gacatccagt tgcgcttcat gggccaggcg cgtagcccgt
    23161 gcggtgagtg aacctgccag acgaatcacc tgataatctt ccacgcacca ggcggcaaca
    23221 atcaccatcg ccgcacccag tttgctctgg tattgggtca gacgctgttt atccagccca
    23281 cgaccataca gcagccagcc gctacgacct gcgtggtaat ccagtggcat cacttcatca
    23341 ccacttaatg aaagaggcag accaggccat aaagagacat cttcaggcag gtcgcaccag
    23401 gtaatgttag gcattaagga tcctgtaaaa tcgttcgaag cagggaaaat aacgcatgag
    23461 gctaccttgt atccattgct tctggcaaca ttaagtctca aattttcaaa gggtggaaga
    23521 tggctcgcac aaaactgaaa ttccggctgc atcgggcagt gattgtcctg ttctgtcttg
    23581 ccttgttagt ggcgctgatg cagggagcgt catggtttag tcaaaaccac cagcgacaac
    23641 gtaatccaca gctggaagaa ctggcccgca ccctggcgcg tcaggtaacg ctgaacgttg
    23701 caccgctgat gcgtaccgac tcaccggatg aaaaacgcat tcaggcgatc ctcgatcagt
    23761 taacggatga aagccgtatc ctcgacgcgg gtgtgtatga cgaacaaggc gatcttatcg
    23821 cacgttctgg cgaaagcgtc gaagtgcgcg accggctggc gctcgacacc catacgctcg
    23881 ccaccgaagc ccaacaggtg gataacacca ctaacatttt acgcctgatg ttgctgcttt
    23941 cactggcaat cggcgtagtg ctgacccgca cgctgctaca gggtaaacgt acccgctggc
    24001 agcaatcgcc cttcctgtta accgccagca aaccggtgcc ggaagaggaa gaaagcgaga
    24061 aaaaagagtg acccattact acaagaaagg aaatcgttat gtccacatta cgcctgctca
    24121 tctctgactc ttacgacccg tggtttaacc tggcggtgga ggagtgtatt tttcgccaga
    24181 tgcccgccac gcagcgcgtt ctgtttctct ggcgcaatgc cgacacggta gtgattggtc
    24241 gcgcgcagaa cccgtggaaa gagtgtaata cccggcggat ggaagaagat aacgtccgcc
    24301 tggcacggcg cagtagcggt ggcggcgcgg tgttccacga tctcggcaat acctgcttta
    24361 cctttatggc tggcaagccg gagtacgata aaaccatctc cacgtcgatt gtgctcaatg
    24421 cgctgaacgc gcttggcgtc agcgccgaag cgtccgggcg taacgatctg gtggtgaaaa
    24481 ccgccgaagg cgaccgcaaa gtctcaggat cggcctatcg cgaaaccaaa gatcgtggct
    24541 tccaccacgg caccttgctg ctcaatgccg accttagccg cctggcaaac tatctcaatc
    24601 cggataaaaa gaaactggcg gcgaaaggca ttacctcagt gcgttcccgc gtgaccaacc
    24661 tcaccgagct gctgccgggg atcacccatg agcaggtttg cgaggccata accaaggcct
    24721 ttttcgccca ttatggcgag cgtgtagaag cggaaatcat ctccccggac aaaacgccag
    24781 acttgccaaa cttcgccgaa atctttgccc gtcagagtag ctgggaatgg aacttcggtc
    24841 aggctccggc attctcgcat ctgctggatg aacgctttag ctggggcggc gtggaactgc
    24901 atttcgacgt tgaaaaaggc catatcaccc gcgcccaggt gtttaccgac agcctcaacc
    24961 ccgcgccgct ggaagccctc gccgggcgac tgcaaggctg cctgtaccgc gcggatatgc
    25021 tgcaacaaga gtgcgaagcg ctgttggttg acttcccgga ccaggaaaaa gagctacggg
    25081 agttgtcgac gtggatagcg ggggcggtaa ggtaactcgc tgattaaaat accaaaggaa
    25141 gggaatatga tcgatctgga aaaccaggag cgggagatta tcaatttaat gttaagccag
    25201 cgtatttcct ggctagccgc cgtgcgtatc aggcataaat tatcgcttgc tgaagtaagt
    25261 aaaatgttag gtatctcgat taattctcta aaatagatcg aaaagacgga acggtttagc
    25321 tcaaacatca aaagcaaaat ggcagaaatt tatggttgtc caccagagtt gctgatatgc
    25381 ccttcctgga tgacggctga acataaatga atagatt
//
LOCUS       DAJVUY010000047        25243 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.047, whole genome shotgun sequence.
ACCESSION   DAJVUY010000047 DAJVUY010000000
VERSION     DAJVUY010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25243
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.047"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..404)
                     /locus_tag="OQQ72_001721"
     CDS             complement(<1..404)
                     /locus_tag="OQQ72_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS2011485.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKESLKNPLP"
     gene            783..1094
                     /gene="rpsJ"
                     /locus_tag="OQQ72_001722"
     CDS             783..1094
                     /gene="rpsJ"
                     /locus_tag="OQQ72_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HCS2011486.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1127..1756
                     /gene="rplC"
                     /locus_tag="OQQ72_001723"
     CDS             1127..1756
                     /gene="rplC"
                     /locus_tag="OQQ72_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCS2011487.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1767..2372
                     /gene="rplD"
                     /locus_tag="OQQ72_001724"
     CDS             1767..2372
                     /gene="rplD"
                     /locus_tag="OQQ72_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCS2011488.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2369..2671
                     /gene="rplW"
                     /locus_tag="OQQ72_001725"
     CDS             2369..2671
                     /gene="rplW"
                     /locus_tag="OQQ72_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCS2011489.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2689..3510
                     /gene="rplB"
                     /locus_tag="OQQ72_001726"
     CDS             2689..3510
                     /gene="rplB"
                     /locus_tag="OQQ72_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCS2011490.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3527..3805
                     /gene="rpsS"
                     /locus_tag="OQQ72_001727"
     CDS             3527..3805
                     /gene="rpsS"
                     /locus_tag="OQQ72_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCS2011491.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3820..4152
                     /gene="rplV"
                     /locus_tag="OQQ72_001728"
     CDS             3820..4152
                     /gene="rplV"
                     /locus_tag="OQQ72_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCS2011492.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4170..4871
                     /gene="rpsC"
                     /locus_tag="OQQ72_001729"
     CDS             4170..4871
                     /gene="rpsC"
                     /locus_tag="OQQ72_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCS2011493.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4884..5294
                     /gene="rplP"
                     /locus_tag="OQQ72_001730"
     CDS             4884..5294
                     /gene="rplP"
                     /locus_tag="OQQ72_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCS2011494.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5294..5485
                     /gene="rpmC"
                     /locus_tag="OQQ72_001731"
     CDS             5294..5485
                     /gene="rpmC"
                     /locus_tag="OQQ72_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCS2011495.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5485..5739
                     /gene="rpsQ"
                     /locus_tag="OQQ72_001732"
     CDS             5485..5739
                     /gene="rpsQ"
                     /locus_tag="OQQ72_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCS2011496.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5904..6275
                     /gene="rplN"
                     /locus_tag="OQQ72_001733"
     CDS             5904..6275
                     /gene="rplN"
                     /locus_tag="OQQ72_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015817037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCS2011497.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6286..6600
                     /gene="rplX"
                     /locus_tag="OQQ72_001734"
     CDS             6286..6600
                     /gene="rplX"
                     /locus_tag="OQQ72_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCS2011498.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6615..7154
                     /gene="rplE"
                     /locus_tag="OQQ72_001735"
     CDS             6615..7154
                     /gene="rplE"
                     /locus_tag="OQQ72_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCS2011499.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7169..7474
                     /gene="rpsN"
                     /locus_tag="OQQ72_001736"
     CDS             7169..7474
                     /gene="rpsN"
                     /locus_tag="OQQ72_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCS2011500.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7508..7900
                     /gene="rpsH"
                     /locus_tag="OQQ72_001737"
     CDS             7508..7900
                     /gene="rpsH"
                     /locus_tag="OQQ72_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCS2011501.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7913..8446
                     /gene="rplF"
                     /locus_tag="OQQ72_001738"
     CDS             7913..8446
                     /gene="rplF"
                     /locus_tag="OQQ72_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCS2011502.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRIKEAKKK"
     gene            8456..8809
                     /gene="rplR"
                     /locus_tag="OQQ72_001739"
     CDS             8456..8809
                     /gene="rplR"
                     /locus_tag="OQQ72_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCS2011503.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8824..9327
                     /gene="rpsE"
                     /locus_tag="OQQ72_001740"
     CDS             8824..9327
                     /gene="rpsE"
                     /locus_tag="OQQ72_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCS2011504.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9331..9510
                     /gene="rpmD"
                     /locus_tag="OQQ72_001741"
     CDS             9331..9510
                     /gene="rpmD"
                     /locus_tag="OQQ72_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCS2011505.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9514..9948
                     /gene="rplO"
                     /locus_tag="OQQ72_001742"
     CDS             9514..9948
                     /gene="rplO"
                     /locus_tag="OQQ72_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCS2011506.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9956..11287
                     /gene="secY"
                     /locus_tag="OQQ72_001743"
     CDS             9956..11287
                     /gene="secY"
                     /locus_tag="OQQ72_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCS2011507.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11319..11435
                     /gene="rpmJ"
                     /locus_tag="OQQ72_001744"
     CDS             11319..11435
                     /gene="rpmJ"
                     /locus_tag="OQQ72_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCS2011508.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11582..11938
                     /gene="rpsM"
                     /locus_tag="OQQ72_001745"
     CDS             11582..11938
                     /gene="rpsM"
                     /locus_tag="OQQ72_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCS2011509.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11955..12344
                     /gene="rpsK"
                     /locus_tag="OQQ72_001746"
     CDS             11955..12344
                     /gene="rpsK"
                     /locus_tag="OQQ72_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HCS2011510.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12378..12998
                     /gene="rpsD"
                     /locus_tag="OQQ72_001747"
     CDS             12378..12998
                     /gene="rpsD"
                     /locus_tag="OQQ72_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HCS2011511.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13024..14013
                     /gene="rpoA"
                     /locus_tag="OQQ72_001748"
     CDS             13024..14013
                     /gene="rpoA"
                     /locus_tag="OQQ72_001748"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCS2011512.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14054..14437
                     /gene="rplQ"
                     /locus_tag="OQQ72_001749"
     CDS             14054..14437
                     /gene="rplQ"
                     /locus_tag="OQQ72_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCS2011513.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14544..14912
                     /locus_tag="OQQ72_001750"
     CDS             14544..14912
                     /locus_tag="OQQ72_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HCS2011514.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGF
                     STDFLRGDYADKLLDKINDN"
     gene            14923..15348
                     /gene="zntR"
                     /locus_tag="OQQ72_001751"
     CDS             14923..15348
                     /gene="zntR"
                     /locus_tag="OQQ72_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HCS2011515.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15404..15622
                     /gene="arfA"
                     /locus_tag="OQQ72_001752"
     CDS             15404..15622
                     /gene="arfA"
                     /locus_tag="OQQ72_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor ArfA"
                     /protein_id="HCS2011516.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15619..16029)
                     /gene="mscL"
                     /locus_tag="OQQ72_001753"
     CDS             complement(15619..16029)
                     /gene="mscL"
                     /locus_tag="OQQ72_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCS2011517.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16159..17535)
                     /gene="trkA"
                     /locus_tag="OQQ72_001754"
     CDS             complement(16159..17535)
                     /gene="trkA"
                     /locus_tag="OQQ72_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCS2011518.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17557..18846)
                     /gene="rsmB"
                     /locus_tag="OQQ72_001755"
     CDS             complement(17557..18846)
                     /gene="rsmB"
                     /locus_tag="OQQ72_001755"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HCS2011519.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18892..19839)
                     /gene="fmt"
                     /locus_tag="OQQ72_001756"
     CDS             complement(18892..19839)
                     /gene="fmt"
                     /locus_tag="OQQ72_001756"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCS2011520.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS
                     LSAAQLERYIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19854..20363)
                     /gene="def"
                     /locus_tag="OQQ72_001757"
     CDS             complement(19854..20363)
                     /gene="def"
                     /locus_tag="OQQ72_001757"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCS2011521.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20493..21617
                     /gene="dprA"
                     /locus_tag="OQQ72_001758"
     CDS             20493..21617
                     /gene="dprA"
                     /locus_tag="OQQ72_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCS2011522.1"
                     /translation="MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL
                     TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL
                     YALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
                     GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVSPLAYNFPRRNRIISGL
                     SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP
                     EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP
                     VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV"
     gene            21589..22062
                     /locus_tag="OQQ72_001759"
     CDS             21589..22062
                     /locus_tag="OQQ72_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HCS2011523.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22091..22633
                     /locus_tag="OQQ72_001760"
     CDS             22091..22633
                     /locus_tag="OQQ72_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HCS2011524.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22638..23210
                     /gene="tsaC"
                     /locus_tag="OQQ72_001761"
     CDS             22638..23210
                     /gene="tsaC"
                     /locus_tag="OQQ72_001761"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HCS2011525.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVLGETGGRLNPSEIRDALTGELFRQG"
     gene            23215..24033
                     /gene="aroE"
                     /locus_tag="OQQ72_001762"
     CDS             23215..24033
                     /gene="aroE"
                     /locus_tag="OQQ72_001762"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HCS2011526.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24030..24287
                     /locus_tag="OQQ72_001763"
     CDS             24030..24287
                     /locus_tag="OQQ72_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HCS2011527.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24263..24817)
                     /locus_tag="OQQ72_001764"
     CDS             complement(24263..24817)
                     /locus_tag="OQQ72_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCS2011528.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGGVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LRYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6458 a         5996 c         6570 g         6219 t
ORIGIN      
        1 aaaggcagcg ggttttttaa tgattctttt cctctcatga gcagaccaat aactacggct
       61 ccgcaagcga atgaggcagc aaggaaaacc agtcgtggta agaaggccca tgaatgccag
      121 gcgccaaggg cggcgagaaa cttcacatca ccatagccta atccttcttt atgtcgcagt
      181 atgcgatacc cccagtaaat gacagcgaat gtgccgtaac caacaattgt cccccataac
      241 gcatcggcta aaccatcagg atgacaaact tgatagaaca aaagacctga ccagagtaac
      301 gggcacgtaa atctgtcagg taacaagcca tgctttgcat cccagaaaaa aagtagggct
      361 gataaacaag cgtacaaaat cagaaaggga agggtagtgt ccataaaaca tcctctgtaa
      421 ttggagtatc accatcgaat aactccggat gctcagcaac agagagagcg ctgatttgtt
      481 aacctgattc cggtgaaaaa cgctatcttc acaaccttac aaatttcgtg gaatgcagct
      541 cgcaatctgc gcgttgcgat taatttctac ccgatgcttg cgtcaggctc agatttgcgt
      601 ataatgcgcg ggcttgtcgt agttgacagc aggttcaatc tgaacctcag ttagccgaat
      661 ttggctacct aacaatgctc ccaatcgggg agctacgtaa gaacggttac actctcccat
      721 caatcgtaat gggtctgagg agtaatcatt ttcgtttata aaataattgg agctctggtc
      781 tcatgcagaa ccaaagaatc cgtatccgcc tgaaagcgtt tgatcatcgt ctgatcgatc
      841 aagcaaccgc ggaaatcgtc gagactgcca agcgcactgg tgcgcaggtc cgtggtccga
      901 tcccgctgcc gacacgcaaa gagcgcttca ctgttctgat ctccccgcac gtcaacaaag
      961 acgcgcgcga tcagtacgaa atccgtactc acttgcgtct ggttgacatc gttgagccaa
     1021 ccgagaaaac cgttgatgct ctgatgcgtc tggatctggc tgccggtgta gacgtgcaga
     1081 tcagcctggg ttaatcaggt cattgagcga ttgagaggtt gaaacaatga ttggtttagt
     1141 cggtaaaaaa gtgggtatga cccgtatctt cacagaagac ggcgtttcta tcccagtaac
     1201 cgtaatcgaa gttgaagcaa accgcgttac tcaggttaaa gacctggcta acgatggcta
     1261 ccgtgctatt caggtgacca ccggtgctaa aaaagctaac cgtgtgacca agcctgaagc
     1321 tggccacttc gctaaagctg gcgtagaagc tggccgtggt ctgtgggaat tccgcctggc
     1381 tgaaggcgaa gagttcactg taggtcagag cattagcgtt gaactgtttg ctgacgttaa
     1441 aaaagttgac gtaactggca cctctaaagg taaaggtttc gcaggtaccg ttaagcgctg
     1501 gaacttccgt acccaggacg ctactcacgg taactccttg tctcaccgcg ttccgggttc
     1561 tatcggtcag aaccagactc cgggcaaagt gttcaaaggc aagaaaatgg caggtcagat
     1621 gggtaacgaa cgtgtaaccg ttcagagcct tgacgtagta cgcgttgacg ctgagcgcaa
     1681 cctgctgctg gttaaaggtg ctgtcccggg tgcaaccggt agcgacctga tcgttaaacc
     1741 agctgtgaag gcgtaaggag atagcaatgg aattagtatt gaaagacgcg cagagcgcgc
     1801 tgactgtttc cgaaactacc ttcggtcgtg atttcaacga agcgctggtt caccaggttg
     1861 ttgttgctta tgcagctggt gctcgtcagg gtactcgtgc tcagaagact cgtgctgaag
     1921 taactggttc cggtaaaaaa ccgtggcgcc agaaaggcac cggccgtgcg cgttctggtt
     1981 ctatcaagag cccgatctgg cgttctggtg gcgtgacctt tgctgctcgt ccgcaggacc
     2041 acagtcaaaa agttaacaag aagatgtacc gcggcgcgct gaaaagcatc ctgtccgaac
     2101 tggtacgtca ggatcgtctg atcgttgtcg agaagttctc tgtagaagcg ccgaaaacta
     2161 agctgctggc acagaaactg aaagacatgg ctctggaaga tgtgctgatc atcaccggtg
     2221 agctggacga aaacctgttc ctggctgcgc gcaacctgca caaggttgac gtacgcgatg
     2281 caactggtat cgacccggtt agcctgatcg ccttcgacaa agtcgtaatg actgctgatg
     2341 ctgttaagca agttgaggag atgctggcat gattcgtgaa gaacgtctgc tgaaggtgct
     2401 gcgtgcaccg cacgtttctg aaaaagcgtc tactgcgatg gaaaaatcca acaccatcgt
     2461 actcaaagtt gctaaagacg cgaccaaagc agaaatcaaa gctgctgtgc agaaactgtt
     2521 tgaagtcgaa gtcgaagtcg ttaacaccct ggtagttaaa gggaaagtta aacgtcacgg
     2581 acagcgtatc ggtcgtcgta gcgactggaa aaaagcttac gtcaccctga aagaaggcca
     2641 gaatctggac ttcgttggcg gcgctgagta agtcggagga gtaatacaat ggcagttgtt
     2701 aaatgtaaac cgacatctcc gggtcgtcgc cacgtagtta aagtggttaa ccctgagctg
     2761 cacaagggca aaccttttgc tccgttgctg gaaaaaaaca gcaaatccgg tggtcgtaac
     2821 aacaatggcc gtatcaccac tcgtcatatc ggtggtggcc acaagcaggc ttaccgtatt
     2881 gttgacttca aacgcaacaa agacggtatc ccggcagttg ttgaacgtct tgagtacgat
     2941 ccgaaccgtt ccgcgaacat cgcgctggtt ctgtacaaag acggtgaacg ccgttacatc
     3001 ctggccccta aaggcctgaa agctggcgac cagattcagt ctggcgttga tgctgcaatc
     3061 aaaccaggta acaccctgcc gatgcgcaac atcccggttg gttctactgt tcataacgta
     3121 gaaatgaaac caggtaaagg cggtcagctg gcacgttccg ctggtactta cgttcagatc
     3181 gttgctcgtg atggtgctta tgtcaccctg cgtctgcgtt ctggtgaaat gcgtaaagta
     3241 gaagcagact gccgtgcaac tctgggcgaa gttggcaatg ctgagcatat gctgcgcgtt
     3301 ctgggtaaag caggtgctgc acgctggcgt ggtgttcgtc cgaccgttcg cggtaccgcg
     3361 atgaacccgg tagaccaccc acatggtggt ggtgaaggtc gtaactttgg taagcacccg
     3421 gtaactccgt ggggcgttca gaccaaaggt aagaagaccc gcagcaacaa gcgtactgat
     3481 aaattcatcg tacgtcgccg tagcaaataa ttttagagga taagccatgc cacgttctct
     3541 caagaaaggt ccttttattg acctgcactt gctgaagaag gtagagaaag cggtggaaag
     3601 cggagacaag aagcccctgc gcacttggtc ccgtcgttca acgatctttc ctaacatgat
     3661 cggtttgacc atcgctgtcc ataatggtcg tcagcacgtt ccggtatttg taaccgacga
     3721 aatggtcggt cacaaactgg gtgaattcgc accgactcgt acttatcgcg gccacgctgc
     3781 tgataaaaaa gcgaagaaga aataaggtag gaggaagaga tggaaactat cgctaaacat
     3841 cgccatgctc gttcttctgc tcagaaggtt cgccttgttg ctgacctgat tcgcggtaag
     3901 aaagtgtcgc aggctctgga tattttgacc tacaccaaca agaaagcggc tgtactggtc
     3961 aagaaagttc tggaatctgc cattgctaac gctgaacaca acgatggcgc tgacattgac
     4021 gatctgaaag ttacgaaaat tttcgtagac gaaggcccga gcatgaagcg cattatgccg
     4081 cgtgcaaaag gtcgtgcaga tcgcatcctg aagcgcacca gccacatcac tgtggttgtg
     4141 tccgatcgct gagactctgg agactagcaa tgggtcagaa agtacatcct aatggtattc
     4201 gcctgggtat tgtaaaacca tggaactcta cctggtttgc gaacaccaaa gaattcgctg
     4261 acaacctgga cagcgatttt aaagtacgtc agtacctgac taaggaactg gctaaagcgt
     4321 ccgtatctcg tatcgttatc gagcgtccgg ctaagagcat ccgtgtaacc attcacactg
     4381 ctcgcccggg tatcgttatc ggtaaaaaag gtgaagacgt agaaaaactg cgtaaggtcg
     4441 tagcggacat cgctggcgtt cctgcacaga tcaacatcgc cgaagttcgt aagcctgaac
     4501 tggacgcaaa actggttgct gacagcatca cttctcagct ggaacgtcgc gttatgttcc
     4561 gtcgtgctat gaagcgtgct gtacagaacg caatgcgtct gggcgctaaa ggtattaaag
     4621 ttgaagttag cggccgtctg ggcggcgcgg aaatcgcacg taccgaatgg taccgcgaag
     4681 gtcgcgtacc gctgcacact ctgcgtgctg acatcgacta caacacctct gaagcgcaca
     4741 ccacttacgg tgtaatcggc gttaaagtgt ggatcttcaa aggcgagatc ctgggtggta
     4801 tggctgctgt tgaacaaccg gaaaaaccgg ctgctcagcc taaaaagcag cagcgtaaag
     4861 gccgtaaata aggagcgtcg ctgatgttac aaccaaagcg tacaaaattc cgtaaaatgc
     4921 acaaaggccg taaccgcggt ctggcgcagg gtacggatgt tagcttcggc agcttcggtc
     4981 tgaaagctgt tggccgtggt cgtctgactg cccgtcagat cgaagcagca cgtcgtgcta
     5041 tgacccgtgc agttaagcgt caaggtaaga tctggatccg tgtgttcccg gacaaaccga
     5101 tcactgaaaa gccgctggca gtgcgtatgg gtaaaggtaa aggtaacgtg gagtattggg
     5161 ttgccttgat tcagccgggt aaagtcctgt atgaaatgga cggtgttccg gaagagctgg
     5221 cccgtgaagc attcaagctg gcagcagcga aactgccgat taaaaccacc tttgtaacta
     5281 agacggtgat gtaatgaaag caaaagagct gcgtgagaag agcgttgaag agctgaacac
     5341 cgagctgctg aacctgctgc gtgagcagtt caacctgcgt atgcaggctg caagtggcca
     5401 gctgcaacag tctcacctgt tgaagcaagt gcgtcgcgat gtcgcacgcg ttaagacttt
     5461 actgaacgag aaggctggtg cgtaatgacc gataaaatcc gtactctgca aggtcgcgtt
     5521 gttagcgaca aaatggagaa atccattgtt gttgctatcg aacgttttgt gaaacacccg
     5581 atctacggta aattcatcaa gcgtacgacc aaactgcacg tacatgacga gaacaacgaa
     5641 tgcggtatcg gtgacgtggt tgaaatccgc gaatgccgtc cgctgtccaa gactaaatcc
     5701 tggacgctgg ttcgcgttgt agagaaagcg gttctgtaat acagtacact ctctcgatac
     5761 gaataaacgg ctcagaaatg agccgtttat tttttctacc catatccttg aagcggtgtt
     5821 ataatgccgc gccctcgata tggggatttt taacgacctg attttcgggt ctcagtagta
     5881 gttgacatta gcggagcact aaaatgatcc aagaacagac tatgctgaac gtcgccgaca
     5941 actccggtgc acgtcgcgta atgtgtatca aggttctggg tggctcgcac cgtcgctacg
     6001 caggcgtagg cgacatcatc aagatcacca tcaaagaagc aattccgcgt ggtaaggtca
     6061 aaaaaggtga tgtgctgaag gcggtagtgg tgcgcaccaa gaagggtgtt cgtcgcccgg
     6121 acggttctgt cattcgcttc gatggtaatg cttgtgttct tctgaacaac aacagcgagc
     6181 agcctatcgg tacgcgtatt tttgggccgg taactcgtga gcttcgtagt gagaagttca
     6241 tgaaaattat ctctctggca ccagaagtac tctaaggagc gaatcatggc agcgaaaatc
     6301 cgtcgtgatg acgaagttat cgtgttaacc ggtaaagata aaggtaaacg cggtaaagtt
     6361 aagaatgtcc tgtcttccgg caaggtcatt gttgaaggta tcaacctggt taagaaacat
     6421 cagaagccgg ttccggccct gaaccaaccg ggtggcatcg ttgaaaaaga agccgctatt
     6481 caggtttcca acgtagcaat cttcaatgcg gcaaccggca aggctgaccg tgtaggcttt
     6541 agattcgaag acggcaaaaa agtccgtttc ttcaagtcta acagcgaaac tatcaagtaa
     6601 tttggagtag tacgatggcg aaactgcatg attactacaa agacgaagta gttaaaaaac
     6661 tcatgactga gtttaactac aattctgtca tgcaagtccc tcgggtcgag aagatcaccc
     6721 tgaacatggg tgttggtgaa gcgatcgctg acaaaaaact gctggataac gcagcagcag
     6781 acctggcagc aatctccggt caaaaaccgc tgatcaccaa agcacgcaaa tctgttgcag
     6841 gcttcaaaat ccgtcagggc tatccgatcg gctgtaaagt aactctgcgt ggcgaacgca
     6901 tgtgggagtt ctttgagcgc ctgatcacta ttgctgtacc tcgtatccgt gacttccgtg
     6961 gcctgtccgc taagtctttc gacggtcgtg gtaactacag catgggtgtc cgtgagcaga
     7021 tcatcttccc agaaatcgac tacgataaag tcgaccgcgt tcgtggtttg gatattacca
     7081 ttaccactac tgcgaaatct gacgaagaag gccgcgctct gctggctgcc tttgacttcc
     7141 cgttccgcaa gtaaggtagg gttactaaat ggctaagcaa tcaatgaaag cacgcgaagt
     7201 aaaacgcgta gctttagctg ataaatactt cgcgaaacgc gctgaactga aagcgatcat
     7261 ctctgatgtg aacgcttccg acgaagatcg ttggaacgct gttctcaagc tgcagactct
     7321 gccgcgtgat tccagcccgt ctcgtcagcg taaccgctgc cgtcaaacag gtcgtccgca
     7381 tggtttcctg cggaagttcg ggttgagccg tattaaggtc cgtgaagccg ctatgcgcgg
     7441 tgaaatcccg ggtctgaaaa aggctagctg gtaattgtca ccaattgaat cacgggagta
     7501 aagacagatg agcatgcaag atccgatcgc ggatatgctg acccgtatcc gtaacggtca
     7561 ggccgcgaac aaagctgcgg tcaccatgcc ttcctccaag ctgaaagtgg caatcgccaa
     7621 cgtgctgaag gaagaaggtt ttattgaaga ttttaaagtt gaaggcgaca ccaagcctga
     7681 actggaactt actctgaagt atttccaggg caaagctgtt gtagaaagca ttcagcgtgt
     7741 cagccgccca ggtctgcgca tctataaacg taaagatgag ctgccgaaag ttatggcggg
     7801 tctgggtatc gcagttgttt ctacctctaa aggtgttatg actgatcgtg cagcgcgcca
     7861 ggctggtctt ggtggcgaaa ttatctgcta cgtagcctaa tcggaggaaa aaatgtctcg
     7921 tgttgctaaa gcaccggtcg ttgttcctgc cggcgttgac gtaaaaatca acggtcaggt
     7981 tattacgatc aaaggtaaaa acggcgagct gactcgtact ctcaacgatg ctgttgaagt
     8041 taaacatgca gataataccc tgaccttcgg tccgcgtgat ggttacgcag acggttgggc
     8101 acaggctggt accgcgcgtg ccctgctgaa ctcaatggtt atcggtgtta ccgaaggctt
     8161 cactaagaag ctgcagctgg ttggtgtagg ttaccgtgca gcggttaaag gtaatgtgat
     8221 taacctgtct ctgggtttct ctcatcctgt tgaccatcag ctgcctgcgg gtatcactgc
     8281 tgaatgtccg actcagactg aaatcgtgct gaaaggcgct gataagcagg tgatcggcca
     8341 ggttgcagcg gatctgcgcg cctaccgtcg tcctgagcct tataaaggca agggtgttcg
     8401 ttacgccgac gaagtcgtgc gtatcaaaga ggctaagaag aagtaaggta acactatgga
     8461 taagaaatct gctcgtatcc gtcgtgcgac ccgcgcacgc cgcaagctcc aggagctggg
     8521 cgcaactcgc ctggtggtac atcgtacccc gcgtcacatt tacgcacagg taattgcacc
     8581 gaacggttct gaagttctgg tagctgcttc tactgtagaa aaagctatcg ctgaacaact
     8641 gaagtacacc ggtaacaaag acgcggctgc agctgtgggt aaagctgtcg ctgaacgcgc
     8701 tctggaaaaa ggcatcaaag atgtatcctt tgaccgttcc gggttccaat atcatggtcg
     8761 tgtccaggca ctggcagatg ctgcccgtga agctggcctt cagttctaag gtagaggtgt
     8821 aagatggctc acatcgaaaa acaagctggc gaactgcagg aaaagctgat cgcggtaaac
     8881 cgcgtatcta aaaccgttaa aggtggtcgt attttctcct tcacagctct gactgtagtt
     8941 ggcgatggta acggtcgcgt tggttttggt tacggtaaag cgcgtgaagt tccagcagcg
     9001 atccagaaag cgatggaaaa agcccgtcgc aatatgatta acgtcgcgct gaataacggc
     9061 actctgcaac accctgttaa aggtgttcac acgggttctc gcgtattcat gcagccggct
     9121 tccgaaggta ccggtatcat cgccggtggt gcaatgcgcg ccgttctgga agtcgctggg
     9181 gttcataacg ttctggctaa agcatatggt tccaccaacc cgatcaacgt ggttcgtgca
     9241 actattgatg gcctggaaaa tatgaattct ccagaaatgg tcgctgccaa gcgtggtaaa
     9301 tccgttgaag aaattctggg gaaataaacc atggcaaaga ctattaaaat tactcaaacc
     9361 cgcagtgcaa tcggtcgtct gccgaaacac aaggcaacgc tgcttggcct gggtctgcgt
     9421 cgtattggtc acaccgtaga gcgcgaggat actcctgcta ttcgcggtat gatcaacgcg
     9481 gtttccttca tggttaaagt tgaggagtaa gagatgcgtt taaatactct gtctccggcc
     9541 gaaggctcca aaaaggcggg taaacgcttg ggtcgtggta tcggttctgg cctcggtaaa
     9601 accggtggtc gtggtcacaa aggtcagaag tctcgttctg gcggtggcgt acgtcgcggt
     9661 ttcgaggggg gtcagatgcc tctgtaccgt cgtctgccga aattcggctt cacttctcgt
     9721 aaagcagcga ttacagccga agttcgtctg tctgacctgg ctaaagtaga aggcggtgtt
     9781 gtagacctga acacgctgaa agcggctaac attatcggta tccagatcga gttcgcgaaa
     9841 gtgatcctgg ctggcgaagt aacgactccg gtaactgttc gtggcctgcg tgttactaaa
     9901 ggcgctcgtg ctgctatcga agctgctggc ggtaaaatcg aggaataagt agcagatggc
     9961 taaacaaccg ggattagatt ttcaaagtgc caaaggtggc ttaggcgagc tgaaacgcag
    10021 actgctgttt gttatcggtg cgctgattgt gttccgtatt ggctctttta ttccgatccc
    10081 tggtattgat gccgctgtac ttgccaaact gcttgagcaa cagcgaggca ccatcattga
    10141 gatgtttaac atgttctctg gtggtgctct cagccgtgct tctatctttg ctctggggat
    10201 catgccgtat atttcggcgt cgatcattat ccagctgctg acggtggttc acccaacgtt
    10261 ggcggaaatt aagaaagaag gggagtctgg tcgtcgtaag atcagccagt acacccgcta
    10321 cggtactctg gtgctggcaa tattccagtc gatcggtatt gctaccggtc tgccgaatat
    10381 gcctggtatg caaggcctgg tgattaaccc gggctttgca ttctacttca ccgctgttgt
    10441 aagtctggtc acaggaacga tgttcctgat gtggttgggc gaacagatca ctgaacgagg
    10501 tatcggcaac ggtatttcaa tcattatctt cgccggtatt gtcgcgggac tcccgccagc
    10561 cattgcccat actatcgagc aagcgcgtca aggcgacctg cacttcctcg tgttgctgtt
    10621 ggttgcagta ttagtatttg cagtgacgtt ctttgttgta tttgttgagc gtggtcaacg
    10681 ccgcattgtg gtaaactacg cgaaacgtca gcaaggtcgt cgtgtctatg ctgcacagag
    10741 cacacattta ccgctgaaag tgaatatggc gggggtaatc ccggcaatct tcgcttccag
    10801 tattattctg ttcccggcga ccatcgcgtc atggttcggg ggcggtactg gttggaactg
    10861 gctgacaaca atttcgctgt atttgcagcc tgggcaaccg ctttatgtgt tactctatgc
    10921 gtctgcaatc atcttcttct gtttcttcta cacggcgttg gttttcaacc cgcgtgaaac
    10981 agcagataac ctgaagaagt ccggtgcatt tgtaccagga attcgtccgg gagagcaaac
    11041 ggcgaagtat atcgataaag taatgacccg cctgaccctg gttggtgcgc tgtatattac
    11101 ctttatctgc ctgatcccgg agttcatgcg tgatgcaatg aaagtaccgt tctacttcgg
    11161 tgggacctca ctgcttatcg ttgttgtcgt gattatggac tttatggctc aagtgcaaac
    11221 tctgatgatg tccagtcagt atgagtctgc attgaagaag gcgaacctga aaggctacgg
    11281 ccgataattg gtcgcccgag aagttacgga gagtaaaaat gaaagttcgt gcttccgtca
    11341 agaaattatg ccgtaactgc aaaatcgtta agcgtgatgg tgtcatccgt gtgatttgca
    11401 gtgccgagcc gaagcataaa cagcgccaag gctgattttt tcgcatattt ttcttgcaaa
    11461 gttgggttga gctggctaga ttagccagcc aatcttttgt atgtctgtgc gtttccattt
    11521 gagtatcctg aaaacgggct tttcagcatg gaacgtacat attaaatagt aggagtgcat
    11581 agtggcccgt atagcaggca ttaacattcc tgatcataag catgccgtaa tcgcattaac
    11641 ttcgatttat ggcgtcggca agacccgttc taaagccatc ctggctgcag cgggtatcgc
    11701 tgaagatgtt aagatcagtg agctgtctga aggacaaatc gatacgctgc gtgacgaagt
    11761 tgccaaattt gtcgttgaag gtgatctgcg ccgtgaaatc agcatgagca tcaagcgcct
    11821 gatggatctt ggttgctatc gcggcttgcg tcatcgtcgt ggtctcccgg ttcgcggtca
    11881 gcgtaccaag accaacgcac gtacccgtaa gggtccgcgc aaaccgatca agaaataatc
    11941 ggggtgattg aataatggca aaggcaccaa ttcgtgcacg taaacgtgta agaaaacaag
    12001 tctctgacgg cgtggctcat atccatgctt ctttcaacaa caccatcgtg actatcactg
    12061 atcgtcaggg taacgcgttg ggttgggcaa cagccggtgg ttccggtttc cgtggttctc
    12121 gcaaatccac tccgtttgca gctcaggttg cagcagagcg ttgcgctgac gccgtgaaag
    12181 aatacggcat caagaatctg gaagttatgg ttaaaggtcc gggtccaggc cgcgaatcta
    12241 ctattcgtgc tctgaacgcc gcaggtttcc gcatcactaa cattactgat gtgactccga
    12301 tccctcataa cggttgtcgt ccgccgaaaa aacgtcgcgt ataacgcctc gttttccagg
    12361 tttgttggag aaagaaaatg gcaagatatt tgggtcctaa gctcaagctg agccgtcgtg
    12421 agggcaccga cttattcctt aagtctggcg ttcgcgcgat cgataccaag tgtaaaattg
    12481 aacaagctcc tggccagcac ggtgcgcgta aaccgcgtct gtctgactat ggtgtgcagt
    12541 tgcgtgaaaa gcaaaaagtt cgccgtatct atggtgtgct ggagcgtcag ttccgtaact
    12601 actacaaaga agcagcacgt ctgaaaggca acaccggtga aaacctgttg gctctgctgg
    12661 aaggtcgtct ggacaacgtt gtataccgta tgggcttcgg tgccactcgt gcagaagcac
    12721 gtcagctggt tagccataaa gcaattatgg taaacggtcg tgttgttaac atcgcttctt
    12781 atcaggttag tccgaatgac gttgtaagca ttcgtgagaa agcgaagaag cagtctcgcg
    12841 tgaaagccgc tctggagctg gctgagcagc gtgaaaagcc aacttggctg gaagttgatg
    12901 ctggcaagat ggaaggtacg tttaagcgta agccggagcg ttctgatctg tctgcggaca
    12961 ttaacgaaca cctgatcgtc gagctttact ccaagtaaag cttagtacca aagagaggac
    13021 acaatgcagg gttctgtgac agagtttcta aaaccgcgcc tggttgatat cgagcaagtg
    13081 agttcgacgc acgccaaggt gacccttgag cctttagagc gtggctttgg ccatactctg
    13141 ggtaacgcac tgcgccgtat tctgctctca tcgatgccgg gttgcgcggt gaccgaggtt
    13201 gagattgatg gtgtactaca tgagtacagc accaaagaag gcgttcagga agatatcctg
    13261 gaaatcctgc tcaacctgaa agggctggcg gtgagagttc agggcaaaga tgaagttatt
    13321 cttaccttga ataaatctgg cattggccct gtgactgcag ccgatatcac ccacgacggt
    13381 gatgtcgaaa tcgtcaagcc gcagcacgtg atctgccacc tgaccgatga gaacgcgtct
    13441 attagcatgc gtatcaaagt tcagcgcggt cgtggttatg tgccggcttc tacccgaatt
    13501 cattcggaag aagatgagcg cccaatcggc cgtctgctgg tcgacgcatg ctacagccct
    13561 gtggagcgta ttgcctacaa tgttgaagca gcgcgtgtag aacagcgtac cgacctggac
    13621 aagctggtca tcgaaatgga aaccaacggc acaatcgatc ctgaagaggc gattcgtcgt
    13681 gcggcaacca ttctggctga acaactggaa gctttcgttg acttacgtga tgtacgtcag
    13741 cctgaagtga aagaagagaa accagagttc gatccgatcc tgctgcgccc tgttgacgat
    13801 ctggaattga ctgtccgctc tgctaactgc cttaaagcag aagctatcca ctatatcggt
    13861 gatctggtac aacgtaccga ggttgagctc cttaaaacgc ctaaccttgg taaaaaatct
    13921 cttactgaga ttaaagacgt gctggcttcc cgtggactgt ctctgggcat gcgcctggaa
    13981 aactggccac cggcaagcat cgctgacgag taaccggatc acaggttaag gttttactga
    14041 gaaggataag gtcatgcgcc atcgtaagag tggtcgtcaa ctgaaccgca acagcagcca
    14101 tcgccaggct atgttccgca atatggcagg ttcactggtt cgtcatgaaa tcatcaagac
    14161 gactctgcct aaagcgaaag agctgcgccg cgtagttgag ccgctgatta ctcttgccaa
    14221 gactgatagc gttgctaatc gtcgtctggc attcgcccgt actcgtgata acgagatcgt
    14281 ggcaaaactg tttaacgaac tgggcccgcg tttcgcgagc cgtgccggtg gttacactcg
    14341 tattctgaag tgtggcttcc gtgcaggcga caacgcgccg atggcttaca tcgagctggt
    14401 tgatcgttca gagaaagcag aagctgctgc agagtaatct gaagcaacgt aaaaaaaccc
    14461 gccccggcgg gtttttttat acccgtagca tccccactta tctacaatag ctgtactctt
    14521 tttgttcatc ccctggagta tttatgtggt tacttgacca gtgggcagag cgtcatatag
    14581 cagaagcgca agcgaaaggt gagtttgata atctggcagg tagcggcgaa ccattgatac
    14641 tggatgatga ttctcatgtg ccaccggaat tacgtgcggg gtatcgcttg ctgaagaatg
    14701 ctggttgctt accgccagaa cttgagcagc ggagggaagc aattcagctt ctggatatcc
    14761 tgagaggtat ccgtcacgat gatccgcaat atcaagaggt tagccgtcga ttgtcattac
    14821 tggaattgaa gctgcgacaa gctggattta gtaccgattt tttacgcggc gattatgctg
    14881 acaagttgtt ggacaaaatc aacgataact agtggagtat gtatgtatcg cattggtgag
    14941 ctggcaaaaa tggcggaagt aacacctgac acgattcgtt attacgaaaa acagcagatg
    15001 atggagcatg aagtgcgtac tgaaggcggg tttcgcctgt ataccgaaag cgatctccag
    15061 cgattgaaat ttatccgcca tgccagacaa ctaggtttca gtctggagtc gatccgcgag
    15121 ttgctgtcga tccgcatcga tcctgaacac catacctgtc aggagtcaaa aggcattgtg
    15181 caggaaagat tgcaggaagt cgaagcacgg atagccgagt tgcagagtat gcagcgttcc
    15241 ttgcaacgcc ttaacgatgc ctgttgtggg accgcccata gcagtgttta ttgttcgatt
    15301 cttgaagctc ttgaacaagg ggcgagtggc gttaagagtg gctgttgatt ttttgcactg
    15361 gcaggattac actcgcgccg taaaataacc aattggagtt tttatgagcc gatatcagca
    15421 tactaaaggg cagataaggg ataatgcgat agaagcatta ctacatgatc ccttattccg
    15481 acagcgcgta gagaaaaata agaaggggaa aggcagttac atgcgaaaag gaaaacatgg
    15541 caatcggggg aactgggagg ccagtggcaa gaaagtaaat cactttttta ccactggtct
    15601 tctgctttca ggcgcttgtt aagagcggtt attctgctct ttcagcaaat cacgaatttc
    15661 tgccagtaat acttcttctt tagttggtgc aggtgcggca gctggttctt cttttttccg
    15721 attcagtttg ttgattagct taatcgccat aaagatggca aaggccacaa tcagaaaatc
    15781 aaagacgttt tgaatgaaga caccgtaatg catcacaaca gcagggatat ccccctgcgc
    15841 atcgcgtagc gtgacagcaa actgtttaaa gtcgatcccg ccaattaata agcccagagg
    15901 tggcatgatg atatcggcaa ccagtgaaga tacaatcttc ccgaatgccg caccgataat
    15961 gacacccacc gccaaatcca ccacgttccc gcgcatcgca aattcgcgaa attctttaat
    16021 aatgctcatg ttattctccc tatgaagccg acaaccataa gtctaacaaa tgttaagcca
    16081 ttttcctgcc aggaatgaat ttaattaatc cttgataatc aaagggaaat aataaggcgt
    16141 cattagacgc cttattaatt acaagaagaa agggcttggc tggaagagtc tttcgacgtc
    16201 ggtaataaac tttttatctg tgaggaacat aattacgtga tcgccttgct caatgcgcag
    16261 attgtcattg gcaatcatca cgtcgtttcc acgtaccacc gctccaataa tcgttcctgg
    16321 cggtagcttg atttcgtcaa tgactctgcc gacaacgcgt gaggtgcttt catcaccgtg
    16381 agcaacggct tcaatagctt ctgctacgcc gcggcgcaat gaggaaacac caacaatatc
    16441 tgcttttcgc acatggctaa gcaacgcaga aatagttgct tgttgtggtg aaattgcaat
    16501 atcgatcacg ctcccctgaa ccagatccac ataagcgcga cgctggatca ataccatcac
    16561 ctttttcgca cccatacgtt tggcaagcat ggcggacatg atattggcct cgtcatcgtt
    16621 ggtgacggca ataaacagat caacttgatc gatatgttct tcggccagca gttcttgatc
    16681 cgacgcatca ccaaaaaaga cgatcgtatt ctgcaacttt tccgccagtt cggcagcgcg
    16741 ctgctgatta cgttcgatga gtttaacgct gtaatctttt tccagacgac gcgccagccc
    16801 tgcaccgata ttaccgccac caaccagcat gatccgctta tacggttttt ccagtcgctg
    16861 taattcactc atcaccgcgc ggatatgctg tgaagcggca ataaagaaca cttcatcacc
    16921 agcttcaaca atggtcgaac cttgtggacg aatggggcga tcgtggcgga aaattgctgc
    16981 cacacgagta tcgatatgtg gcatatgttc gcgcatggtc gaaagtgcat taccaatcag
    17041 cgggccgcca taataggctt taactacagc gaggctgact ttaccctcag cgaagttcac
    17101 cacctgcaat gcgcctggat actcaatcag tcggtaaata ttatcgataa ccaactgctc
    17161 tggtgcgatc agatgatcaa tcggtacagc atctgaatga aatagcttat cggcatcgcg
    17221 tacgtagtct ggtgagcgga tgcgagcgat gcgattaggg gtgttgaaaa gtgagtaggc
    17281 tacctggcag gcaaccatat tggtttcatc tgaactggtt acagcaacca gcatatcggc
    17341 gtcgtcggca cctgcctccc gcaatacgcg tggatgagag ccatgcccct gcacgactcg
    17401 caggtcaaat ttatcctgca aggtccgcag acgctcaccg ttggtatcga caacagtaat
    17461 atcgttgttc tcgccaacca ggttttccgc cagtgtgccg ccaacctggc cggcacccag
    17521 aatgataatt ttcatcagtc tcgacccgtt atctcatcac tttttgatta gcttagcgta
    17581 aaagaagccg tcgccctctt cggcaccagg cagattttgt ttacccggtt gctctggtgt
    17641 tcctgtttcg caaagttcgg catcagcggt acgttgcaaa aaagctttaa tctgcaggct
    17701 attctcttcc ggtaacaccg aacaggtggc atagaccagg gttccaccgg attttaaatg
    17761 cggccaaatg gcgtcgagaa tttcagactg caattgcgcg agttccggga tatcgcgatc
    17821 gcgacgtaac catttaatat ccggatggcg acgaatcacc cccgttgctg aacaaggcgc
    17881 atctaataaa atgcgatcaa actgttgctc gccacaccat tgggaagggt aacggccatc
    17941 accttgtttc acggttgcct tcataccaag gcgttttaaa ttgtcgtaaa cgcgagagag
    18001 gcgctgttcg tcaatatcaa ccgcaacaac ctgcgcttct ggtgccacct caaggatatg
    18061 cgttgtttta ccgccggggg cggcacaaag atccagaatg tgttcaccgt tttgtggcgc
    18121 aagccaggtc atgcaacctt gtgctgatgc atcctgaacg gtaacccatc cgtcttcaaa
    18181 accaggtagc gcatgaacag gtgcaggtgt ttccagacgt acagcatcag ggtaatccgc
    18241 atgcgggaaa cctttcattc ctgcttcatc cagcaatgca agccagctgt cgcgggaatg
    18301 atgcgtacga ttaacgcgca gccacattgg cggacgctgg ttattggctt cgacgatgga
    18361 ttgccactgc tctggatacg ctttttgcag acgcttcagc aaccaggaag gatgcagata
    18421 acgtgcatca ctggcattaa acttggctaa taactcttct tgctgacgct ggaactggcg
    18481 taatacaccg ttaatcaacc ctttaagttg cggacgctta attgcgatag cgccttcaac
    18541 cgtttcagcc agcgcagcat gaggtggaat gcgggtataa agcagttgat acaaaccaac
    18601 cataatcagg taatgcacag tgcgctgttt gccggtcatc ggacgggcca ttaacttatt
    18661 aatcagccag tctaactgcg aaagcgtacg cagtacgcca aagcacaact cttgaagaag
    18721 tgctttgtct ttatcagaaa ctttttgctg gagcggtggc agaatgttgc ttaatgattg
    18781 cccttgctcg acgacttgtt caacggcctg ggccgccatg ctacgtaaat tacgttgttt
    18841 tttcataagt ataaaaatgc ccggtaagac cgggcttaga agagtggact atcaggccag
    18901 acggttgccc ggaacaaacc attcccgacg agaattcagg aggtcttgcg cgctcatcgc
    18961 tttcttaccc gcaggttgta acgagagcag attcaggatt ccatcaccag ttgcaacctg
    19021 aatgccttgt ttgttggctt caaggatcgt tcctggtgca gcgttggttg ccgtatcaat
    19081 gaccgacgct ttccagactt taaccggctg tctttcaatt tccagccagc tcattggcca
    19141 tggattgaaa gcgcgaatgt agcgttcaag ctgtgctgcc gaaagtgacc agtcaatacg
    19201 cgcttcttct ttactcaact tttcggcgta agtgacaaga gtttcgtcct gaacttctgg
    19261 tttcgccgtg ccgtctgcca gttgtttcaa cgtggtgata agcccttgtg ggccaagctc
    19321 tgccagcttg tcgtacagcg taccactggt atcttctgca gtaatcgggc aggagagctt
    19381 atagagcatg tcaccggtgt ctaaaccgac atccatttgc ataatggtca caccagtttc
    19441 tgcatcaccc gcccatagtg agcgttggat tggtgcagca ccgcgccagc gtggcagcag
    19501 tgaaccatga acgttgatac agccaagacg cggcatctcc agcactgctt taggcagaat
    19561 taagccatag gcgacgacga ccataacatc agcctgcaga tcggcgacca gttgctggtt
    19621 ttcttgtgga cgcagggaaa caggttgaaa aacgggcaga cctttttcct cagccagaac
    19681 tttaaccggg ctgggcatca gttttttacc gcgtcctgcc ggtcggtctg gctgggtgaa
    19741 cacgccaacg acgttatgac cagaagacaa cagcgcgtcg agatgacgcg ctgcaaagtc
    19801 aggtgtaccc gcaaaaataa tacgtagtga ttctgacacg ttagttctta tccttaagcc
    19861 cgggctttca gacgatccag tttttcaact ttctgacgaa tacgttgttg tttcaacggt
    19921 gacagataat ccataaacag tttgccgacc aggtgatcca tctcatgctg aatacagatg
    19981 gctaacagac cgtctgcttc caattcaaat ggtttaccgt cgcggtccag ggcgcgaatt
    20041 ttaactttct ctgcgcgtgg cactaaagca cgttgttcag ggatcgacag gcaaccttct
    20101 tcaatgcctg tttcgccgct tttttctaaa agctccggat tgattaacac cagccgttcg
    20161 tcacggtttt ccgaaacatc aataacaatg atacgttgat ggatatcaac ctgggttgcc
    20221 gccaggccaa taccttcttc tgcgtacatc gtctcgaaca tatcatcgac gatacgctga
    20281 atttctgcat tcacttcttc taccggttta gcaactttgc gaagccgctc gtccggaata
    20341 tgtaacactt gcaaaactga cataaatctc cagagatgtg ttcaggagtt agaaagatta
    20401 tttcttctat tctagacaaa tccccctctg attgacagca tcactgacca atcgcaaaga
    20461 ttgctaaggc tgcttatggc agggagataa ggatggtcga tacagatatt tggctgcgtt
    20521 taatgagcat cagcagcttg tacggcgatg atatggtccg tatagctcac tggctggcaa
    20581 aacagtcgca tattgatgcg gttgtattgc agcaaacagg gcttacattg cggcaggcac
    20641 aacgctttct ttcatttccg cgaaagagta tcgaaagctc actttgttgg ttggagcaac
    20701 ccaaccatca tttaatccct gcggacagcg aattttatcc tcctcaactt ctggcgacga
    20761 cagattaccc cggcgcactg tttgttgaag gagaactgta cgcgctgcat tcatttcagc
    20821 ttgccgtagt ggggagtcgg gcgcattcat ggtatggcga gcgatgggga cgattatttt
    20881 gcgaaactct ggccacgcgt ggagtgacaa ttacgagtgg actggcgcgt ggaatcgatg
    20941 gtgtggcgca taaagcggcc ttacaggtaa atggcgtcag cattgctgta ttggggaacg
    21001 gacttaatac cattcatccg cgccgccatg cccgactggc taccagtttg cttgaacatg
    21061 gtggggcact tgtctcggaa tttcccctcg atgtttcacc ccttgcttac aatttcccac
    21121 gaagaaatcg cattatcagt ggtctaagta aaggtgtact ggtggtggaa gcggctttgc
    21181 gcagtggttc gttggtgaca gcacgttgtg cgcttgagca ggggcgtgaa gtttttgcct
    21241 tgccaggacc aatagggaat ccgggaagcg aagggcctca ctggttaata aaacaaggtg
    21301 cgattcttgt gacggaaccg gaagaaattc tggaaaactt gcaatttgga ttgcactggt
    21361 tgccagacgc ccctgaaaat tcattttatt caccagatca gcaagacgtg gcattgccat
    21421 ttcctgagct cctggctaac gtaggagatg aggtaacacc tgttgacgtc gtcgctgaac
    21481 gtgccggcca acctgtgcca gaggtagtta ctcaactact cgaactggag ttagcaggat
    21541 ggatcgcagc tgtacccggc ggctatgtcc gattgaggag ggcatgccat gttcgacgta
    21601 ctaatgtatt tgtttgaaac ctatattcac acagaagctg agttgcgtgt ggatcaagac
    21661 aaacttgaac aggatcttac cgacgcagga tttgatcgag aagatatcta caatgccctg
    21721 ctttggctgg aaaagcttgc ggattatcag gaaggactga cagaaccgat gcaactggcc
    21781 tctgatccac tctccatgcg tatttatacc cctgaggagt gtgaaagact ggatgccagc
    21841 tgtcgtggtt ttctgctttt ccttgagcaa attcaggtgc ttaaccttga aatccgtgaa
    21901 atggtgatag agcgagtgct cgcgctggat accgcagagt tcgacctgga agacctgaaa
    21961 tgggtaatcc tgatggtgtt gttcaatatt ccgggctgcg aaaatgcgta ccagcaaatg
    22021 gaagaattac tctttgaagt gaatgaaggt atgctgcatt aatcatttct ttaattcagc
    22081 ataagttgtt atggcgaaat cagcactgtt cacggtgcgt aataatgagt cctgcccaaa
    22141 gtgcggggct gaactggtta ttcgatccgg gaaacacggt ccgtttcttg gatgctcaca
    22201 gtatccggcg tgtgactacg tccgtcctct gaaatcttca gcggatggac atattgtcaa
    22261 agttctggag gggcaggttt gccctgcatg tggcgcaaat ctggtattac gccagggacg
    22321 ctttggtatg tttattggtt gcagtaacta ccctgaatgc gaacataccg aacttatcga
    22381 taaaccggac gaaacagcaa ttacatgccc ccaatgtcgg acgggccatc tggtccagcg
    22441 ccgctcccgt tatggcaaaa catttcactc ctgtgatcgc tacccggagt gtcaatttgc
    22501 cattaacttc aaacccatag ctggagaatg ccctgagtgt cattatccac tactcatcga
    22561 aaagaaaacc gcgcagggtg taaaacactt ttgtgccagt aaacaatgtg gaaagccggt
    22621 ttcggcggaa taataacgtg aataataacc tgcaaggaga cgctatcgca gctgcgatag
    22681 atgtcctcaa tgaagaacgt gtcatcgcct atccaacgga agccgttttc ggtgttgggt
    22741 gcgatcctga tagcgaaaca gcagtgatga gactgttgga gttaaaacag cgtccggttg
    22801 ataaggggct gattttaatc gcggcaaatt acgagcagct taaaccctat attgatgaca
    22861 ccatgctgac tgatgcgcag cgtgaaacca ttttttcccg ctggccaggt cctgtcacct
    22921 ttgtctttcc cgcgcctgcg acaacaccgc gctggttgac gggccgcttt gattcgcttg
    22981 ctgtacgagt caccgaccat ccgttggtgg ttgctttgtg ccaggcttat ggtaaaccgc
    23041 tggtttctac cagtgccaac ttgagtggat tgccaccttg tcgaacagta gacgaagttc
    23101 gcgcacaatt tggcgcggcg ttcccggttg tgcttggtga aacggggggg cgtttaaatc
    23161 cttcagaaat ccgcgatgcc ctgacgggtg aactgtttcg acaggggtaa cataatggaa
    23221 acctatgctg tttttggtaa tccgatagcc cacagcaaat cgccattcat tcatcagcaa
    23281 tttgctcagc aactgaatat tgaacatccc tatgggcgcg tgttggcacc catcaatgat
    23341 ttcatcaaca cactgaacgc tttctttagt gctggtggta aaggtgcgaa tgtgacggta
    23401 ccttttaaag aagaggcttt tgccagagcg gatgagctta ctgaacgggc agcgttggct
    23461 ggtgctgtta ataccctcaa gcggttagaa gatggacgct tgcagggtga caataccgat
    23521 ggtataggtt tgttaagcga tctggaacgt ctgtctttta tccgtccggg tttacgtatt
    23581 ctgcttatcg gcgctggtgg agcatctcgc ggcgtactac taccactcct ttccctggac
    23641 tgtgcggtga caatcactaa tcggacggta tcccgtgcgg aagagttggc taaattgttt
    23701 gcgcacactg gcagtattca ggcgttgggt atggacgaac tggaaggtca tgagtttgat
    23761 ctcattatta atgcaacatc cagtggcatc agtggtgata ttccggcgat cccgtcatcg
    23821 ctcattcatc taggcattta ttgctatgac atgttctatc agaaaggaaa aactcctttt
    23881 ctggcatggt gtgagcagcg aggctcaaag cgtaatgctg atggtttagg aatgctggtg
    23941 gcacaggcgg ctcatgcctt tcttctctgg cacggtgttc tgcctgacgt agaaccagtt
    24001 ataaagcaat tgcaggagga attgtccgcg tgaatcaggc catccagttt ccggacaggg
    24061 aagagtggga cgagaataaa aaatgtgtat gttttcccgc tctcgtgaat ggtatgcaac
    24121 tgacatgcgc gatctctggc gagagtctgg cgtatcgctt tactggagat acgccagaac
    24181 agtggttagc gagttttcgt cagcatcgct gggacctgga agaagaagcg gaaaacttaa
    24241 ttcaggaaca aagtgaagat gatcaaggct gggtctggtt accctgatcc agatattcgt
    24301 ccttccattt cacgtaatta ttcgcggaat agcgtaaccc agccttctct tcatcactta
    24361 acgggcggat ctgtttgacg gggctaccga gatacagata tccgctctcc agccgtttat
    24421 tttgtgggac cagactaccc gcaccaatca tcacatcatc ttctactatt gcgccatcaa
    24481 gtaaaattga gcccatccca accaaaactc gattgccaat ggtgcagccg tggagcatca
    24541 ccttgtgacc aacagtgaca tcttcgccaa tggttaatgg gttgccatct gggttgtacg
    24601 aggatttatg agtgacatgc aacatactgc catcctggat attggtgcgt gctccgatct
    24661 gtacataatg tacatctcca cgaatcacaa cgagcggcca gatccccaca tcatcagcca
    24721 gacgaacgcc accaatcacg acactgctat cgtcgatcat tacgcgctga ccgatttgtg
    24781 gaaaaagatc gcggtatggg cgtaaaacat cagacatact tacctcagca ataaatgatt
    24841 tactaatgac tttgggggca ttattggcct tgtgcaagtc ttttagtatg caaaaaagca
    24901 ccgttttgtg tgcgattgca gcaaaaaggg tgaaaaaaca acaaacagaa aaaaagatca
    24961 aaaaaatact tgtgcaaaat attgggatcc ctataatgcg cctccgttaa gacgacaacg
    25021 tgaaacactt cacaggatgg tcggaacaac gaagagaaaa aatcctgaaa ttcagggttg
    25081 actctgaaag aggaaagcgt aatatacgcc acctcgcgac agtgagctga aagccgcgtc
    25141 gcaactgctc tttaacaatt tatcagacaa tctgtgtggg cactcgaaga tacggattct
    25201 taacgtcgca agacgaaaaa tgaataccaa gtctcaagag tga
//
LOCUS       DAJVUY010000048        25119 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.048, whole genome shotgun sequence.
ACCESSION   DAJVUY010000048 DAJVUY010000000
VERSION     DAJVUY010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25119
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.048"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..393
                     /gene="hyfA"
                     /locus_tag="OQQ72_001765"
     CDS             <1..393
                     /gene="hyfA"
                     /locus_tag="OQQ72_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HCS2011529.1"
                     /translation="QLNESLCIGCKLCAVVCPFGAISASGSRPVNAPAQYVFQADGSL
                     KDGEENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVRACPNQALRLITDDSLQR
                     QMKEKQRLAASWFANGGEDPLSLTQEQH"
     gene            393..2409
                     /gene="hyfB"
                     /locus_tag="OQQ72_001766"
                     /pseudo
     CDS             393..2409
                     /gene="hyfB"
                     /locus_tag="OQQ72_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            2420..3367
                     /gene="hyfC"
                     /locus_tag="OQQ72_001767"
     CDS             2420..3367
                     /gene="hyfC"
                     /locus_tag="OQQ72_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HCS2011530.1"
                     /translation="MRQTLCDGYLVIFALAQAVILLLLTPLFTGISRQIRARMHSRRG
                     PGIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG
                     GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA
                     GSTHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE
                     YSGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV
                     LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            3384..3494
                     /locus_tag="OQQ72_001768"
     CDS             3384..3494
                     /locus_tag="OQQ72_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HCS2011531.1"
                     /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGFCSPH"
     gene            3506..4613
                     /locus_tag="OQQ72_001769"
                     /pseudo
     CDS             3506..4613
                     /locus_tag="OQQ72_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            4625..5275
                     /gene="hyfE"
                     /locus_tag="OQQ72_001770"
     CDS             4625..5275
                     /gene="hyfE"
                     /locus_tag="OQQ72_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HCS2011532.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            5280..6860
                     /gene="hyfF"
                     /locus_tag="OQQ72_001771"
     CDS             5280..6860
                     /gene="hyfF"
                     /locus_tag="OQQ72_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HCS2011533.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVDVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            6850..8565
                     /gene="hyfG"
                     /locus_tag="OQQ72_001772"
     CDS             6850..8565
                     /gene="hyfG"
                     /locus_tag="OQQ72_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HCS2011534.1"
                     /translation="MNVNSSSNSGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLHKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            8575..9114
                     /gene="hyfH"
                     /locus_tag="OQQ72_001773"
     CDS             8575..9114
                     /gene="hyfH"
                     /locus_tag="OQQ72_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HCS2011535.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            9111..9869
                     /gene="hyfI"
                     /locus_tag="OQQ72_001774"
     CDS             9111..9869
                     /gene="hyfI"
                     /locus_tag="OQQ72_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HCS2011536.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            9862..10275
                     /gene="hyfJ"
                     /locus_tag="OQQ72_001775"
     CDS             9862..10275
                     /gene="hyfJ"
                     /locus_tag="OQQ72_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HCS2011537.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHRSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            10305..12317
                     /gene="hyfR"
                     /locus_tag="OQQ72_001776"
                     /pseudo
     CDS             10305..12317
                     /gene="hyfR"
                     /locus_tag="OQQ72_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HyfR"
     gene            12339..13184
                     /locus_tag="OQQ72_001777"
                     /pseudo
     CDS             12339..13184
                     /locus_tag="OQQ72_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
     gene            complement(13222..14283)
                     /locus_tag="OQQ72_001778"
     CDS             complement(13222..14283)
                     /locus_tag="OQQ72_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS2011538.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            14496..15959
                     /gene="bepA"
                     /locus_tag="OQQ72_001779"
     CDS             14496..15959
                     /gene="bepA"
                     /locus_tag="OQQ72_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HCS2011539.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSTPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            15980..16339
                     /gene="arsC"
                     /locus_tag="OQQ72_001780"
     CDS             15980..16339
                     /gene="arsC"
                     /locus_tag="OQQ72_001780"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HCS2011540.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(16477..17223)
                     /gene="hda"
                     /locus_tag="OQQ72_001781"
     CDS             complement(16477..17223)
                     /gene="hda"
                     /locus_tag="OQQ72_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HCS2011541.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="OQQ72_001782"
     CDS             complement(17273..18562)
                     /gene="uraA"
                     /locus_tag="OQQ72_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HCS2011542.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(18648..19274)
                     /gene="upp"
                     /locus_tag="OQQ72_001783"
     CDS             complement(18648..19274)
                     /gene="upp"
                     /locus_tag="OQQ72_001783"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCS2011543.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            19598..20635
                     /gene="purM"
                     /locus_tag="OQQ72_001784"
     CDS             19598..20635
                     /gene="purM"
                     /locus_tag="OQQ72_001784"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HCS2011544.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            20635..21273
                     /gene="purN"
                     /locus_tag="OQQ72_001785"
     CDS             20635..21273
                     /gene="purN"
                     /locus_tag="OQQ72_001785"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCS2011545.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKIHENAAWLDGQRLPPQGYAADE"
     gene            21445..23511
                     /gene="ppk1"
                     /locus_tag="OQQ72_001786"
     CDS             21445..23511
                     /gene="ppk1"
                     /locus_tag="OQQ72_001786"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HCS2011546.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNPEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            23516..25057
                     /gene="ppx"
                     /locus_tag="OQQ72_001787"
     CDS             23516..25057
                     /gene="ppx"
                     /locus_tag="OQQ72_001787"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCS2011547.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
BASE COUNT         5717 a         6579 c         6684 g         6139 t
ORIGIN      
        1 caactcaacg aaagcctctg tattggctgc aagctttgcg ccgtggtctg cccatttggc
       61 gcaatcagcg cttcaggaag ccgtccggtg aatgcccctg cgcaatatgt ttttcaggct
      121 gacggctcac tcaaagatgg cgaagaaaac gcgccgaccc aacatgcttt gctgcgctgg
      181 gaaccgggtg tccagaccgt cgcggtgaaa tgcgacctgt gtaatttctt gccagaaggt
      241 ccggcctgcg ttcgcgcttg cccgaatcag gcgttacggc tgattaccga cgatagcctg
      301 caacgtcaga tgaaagaaaa acagcgcctt gccgcaagct ggtttgccaa tggcggggag
      361 gatccccttt ccctcactca ggagcaacac taatggatgc cctgcaatta ttaacctggt
      421 cgctgatcct ctttctgttt gccagtctgg cttcgctgtt ttactcggtc tggacagact
      481 ggctattaag ctttccggca tcacatcgct ggtgggcggc gtgattggca tcatcagcgg
      541 aattacgcaa ttacatgctg gtgtaacttt agtcgcccgt tttgccaccc cttttgactt
      601 tgccgattta accctgcgaa tggatagcct ctcggtattt atggtgctgg ttatctcctt
      661 gctggtggtg gtttgttcgc tctattcatt gacttatatg cgcgaatacg agggcaaagg
      721 cgcggcggcg atgggcttct ttatgaatct tttcatcgca tcgatggttg ccctgctggt
      781 gatggacaac gctttttggt tcatcgtgct gtttgaaatg atgtcgctgt cttcctggtt
      841 tctggtcatt gccaggcagg ataaaacgtc gatcaacgct ggcatgctct acttttttat
      901 cgcccacgcc ggatcggtgc tgattatgat cgccttcttg ctgatggggc gcgaaagcgg
      961 cagcctcgat tttgccagtt tcgcacgctt tcactttctc cggggctggc gtcggcgatg
     1021 tttctgctgg cctttttcgg ttttggcgcg aaagccggga tgatgccgtt gcacagctgg
     1081 ttgccgcgcg ctcaccctgc cgcaccatcg cacgcttcgg cgttgatgtc tggcgtaatg
     1141 gtcaaaatcg gtattttcgg catcctgaaa gtagcgatgg atctgctggc gcaaacgggt
     1201 ttgcctctgt ggtggggcat tctggtgatg gcgatcggcg caatctccgc gctcctgggc
     1261 gtgctatatg cgctggcgga acaggatatc aaacggctgc tggcctggag taccgtcgaa
     1321 aacgtcggca ttattttgct ggcagtcggt gtggcgatgg acggtctgtc actgcacgac
     1381 ccgctgctca ccgtggttgg actgctcggc gcactgtttc atctgctcaa ccatgcgctg
     1441 ttcaaagggc tgctatttct cggcgcgggc gcgattattt cgcgtttgca tacccacgac
     1501 atggaaaaaa tgggggcact ggcgaaacgg atgccgtgga cagccgcagc atgcctgatt
     1561 ggttgcctcg cgatatcagc cattcctccg ctgaatggtt ttatcagcga atggtacacc
     1621 tggcagtcgc tgttctcact aagtcgtgtg gaagccgtag cgctacaact tgcgggtcct
     1681 attgctatgg taatgctggc agtcactggt gggctggcag taatgtgctt cgtcaaaatg
     1741 tacggtatta ctttctgtgg tgcgccgcgc agtacacacg ctgaagaggc acaggaagtg
     1801 ccaaatacga tgatcgtcgc catgctactg ctcgcggcac tctgcgtatt aattgcgctt
     1861 agtgccagtt ggctggcacc gaagataatg catattgccc atgcgtttac caatacccct
     1921 cccgtcactg tcgccagcgg aatagcactt gtacccggca cgtttcatac acgggtcact
     1981 ccttcattac tgttgctgtt actactggcg atgcctttgc tgcctggcct ttactggctg
     2041 tggtgtcgtt cgcgccgcgc agcgtttcgt cgcacaggag atgcctgggc atgcggctac
     2101 ggctgggaaa acgcgatggc tccgtcaggc aatggcgtga tgcagccgct gcgtgtggtc
     2161 ttctctgcgt tatttcgtct acgacaacag ctcgacccta cgctgaggct aaataaagat
     2221 cttgcgcacg tcaccgccag ggctcagagc acagaaccct tctgggatga gcgggtgatc
     2281 cgccccatcg tgagcgccac ccaacggctg gccaaagaaa tacagcatct gcaaagcggc
     2341 gactttcgtc tctattgcct gtatctagtt gccgcactgg ttgtgctgct aatcgctatt
     2401 gccgtctaag gaaatcacca tgagacaaac tctttgcgac ggatatctgg tcatttttgc
     2461 gttagcacag gccgtgattc tgctgctgct aaccccgctt tttacgggta tttcccggca
     2521 gatacgcgcg cgtatgcact cccgccgcgg gccggggatc tggcaggatt atcgcgagat
     2581 ccacaaactg tttaaacgcc aggaagttgc gcctatatct tcaggtctga tgttccgcct
     2641 gatgccgtgg gtattaatca gcagcatgct ggtgctggcg atggccctac cactttttat
     2701 taccgtttcc ccttttgcgg gcggcggcga tctgatcacc cttatctatc ttcttgccct
     2761 gtttcgtttt ttctttgctc tttccggact ggataccgga agcccgtttg cgggagtcgg
     2821 tgccagtcgc gagttgacgc tcggcattct ggtcgaaccc atgctcattc tctcactgct
     2881 ggtattggcg ctgatagcag gttccacgca tatcgagatg atcagcaata cgctggcaac
     2941 gggctggaac tcgccgctaa ccaccgtact ggcgttactg gcctgtggtt ttgcctgctt
     3001 cattgagatg ggaaaaattc cctttgatgt tgctgaagca gaacaggaat tacaggaagg
     3061 cccgctgacc gaatattccg gtgccgggct ggcgctagcg aaatgggggc tggggctgaa
     3121 acaggtcgtg atggcagcac tgtttgtggc cctgtttctg ccctttgggc gcgcgcaaga
     3181 actttctctc gcctgcctgc tgacttcact tgtcgttacg ctgctcaagg ttttgctgat
     3241 ttttgtactg gcctcaatcg cagaaaacac gctggcacgc gggcgttttt tactcattca
     3301 ccatgtgacc tggcttggct tcagccttgc tgcgcttgca tgggtcttct ggttaaccgg
     3361 tctgtaagga gcactgacgg aatatggaaa atcttgctct gacgacgtta atgctgcctt
     3421 ttatcggcgc actggtcgtt tcgttttcgc cacaacgtcg ggccgccgaa tgggggtttt
     3481 gttcgccgca ctgaccacgc tgtgcatgtt gtcgctgatc tccgcgtttt atcaggccga
     3541 taaagttgcc gtcacgttga cgttggtcaa cgtgggggat gtggcattgt ttggcctggt
     3601 cattgatcgc gtgagtacgc tgattctgtt tgtggtggtg tttctcggtt tgctggtcac
     3661 gatctactcc acgggttatc tgacggataa aaatcgcgaa cacccgcata acggcacgaa
     3721 tcgttattac gcatttttgc tggtgtttat cggcgcgatg gcgggactgg tactctcctc
     3781 gacgctgctc ggtcagttgt tgttttttga aattagggcg gctgctcctg ggcgttgatc
     3841 agttattacc agagcgataa agcgcagcgt tcaacactaa aagcgttgct tatcacccat
     3901 atcggttcgt tggggttgta tcttgccgcc gccacgctgt ttttgcagac cggaacgttt
     3961 gtgcttagcg cgatgagcga gttacatggc gacgcacgtt atctggttta tggcggcatc
     4021 ctgtttgccg cgtgggggaa atcggcccag ctaccgatgc aagcgtggct accggacgca
     4081 atggaagcgc caacaccgat cagagcctat ctccacgccg catcgatggt gaaagtgggc
     4141 ggctggcact ggagggcagc atcgcctaca tcgtcaacca cgcgttcgct aaaagcctgt
     4201 ttttccttgt agcaggtgcg ctgagttaca gctgcggcac gcgcttgttg ccgcgtctgc
     4261 gtggcgtatt gcactccctg ccgttgccag gcgtgggttt ctgcgtggca gcgctggcga
     4321 ttaccggtgt gccgccgttc aacggcttct tcagtaaatt cccgctgttt gccgccggtt
     4381 ttgcgttgtc agtggagtac tggatcctgc tgcccgccat gattctgctg atgattgaat
     4441 cggtcgccag tttcgcctgg tttattcgct ggtttggtcg cgttgtgcct ggcaaaccga
     4501 gcgaggccgt cgccgatgcc gcaccgctgc cagggtcaat gcgcctggtg ttgattgtac
     4561 tgattgtgat gtcgctgatt tccagcgtaa tcgccgcgac ctggttgcag taaggagatg
     4621 atgaatgatc ggttctatga tcgtaaataa tctggcggga ctgatgatgc tgacatcgct
     4681 gtttgtgatt agcgtcaaaa gctatcgcct gtcatgcgga ttttacgcct gccagtcgct
     4741 ggtgctggtg tctattttcg ccactctctc gtgcctgttc gccgcagagc aactgctgat
     4801 ctggtccgcc agcgccttta tcaccaaagt gctgctggta ccgttaatca tgacttacgc
     4861 tgcacgaaat attccccaga acatcccgga aaaagcgtta ttcggtccgg caatgatggc
     4921 actgctcgcg gcgttaattg tcctgctttg cgcatttgtc gttcagcccg tgaagctacc
     4981 gatggctacc gggctgaaac cggcgctggc ggtagcgtta ggtcattttc tgcttggcct
     5041 gctgtgcatt gtcagccagc gcaatatcct gcggcaaatt tttggttact gcctgatgga
     5101 aaacggctcc catctggtgc tggcgcttct tgcctggcga gcaccggaac tggtggaaat
     5161 aggtatcgct accgacgcca tcttcgccgt cattgtgatg gtgttactgg caagaaaaat
     5221 atggcgtacc cacggcacgc tggacgtgaa caacttgacc gcgctgaagg gataatgaga
     5281 tgagttattc tgtgatgttc gctttactcc tgctcacgcc gctgcttttt tcgctgctct
     5341 gttttgcctg ccggaaacgg gggctctctg cgacttgtac ggtgactgta ttacatagct
     5401 tagggatcac actgctgctg attctggcac tctgggtggt ccaaactgcc gctgatgcag
     5461 gagaaatatt cgctgcggga ctgtggcttc atattgatgg tctgggcggt ttgttcctcg
     5521 ccattcttgg tgtgattggc tttctcaccg gtgtttactc gattggctac atgcgtcatg
     5581 aagtggcaca cggcgagctt tcacccgtta cactgtgcga ttactacggt ttcttccatc
     5641 tgtttttgtt caccatgctg ctggttgtta ccagcaataa cctgattgtg atgtgggcgg
     5701 cgatcgaagc caccacctta agctcggcgt ttctggtagg catttacggt cagcgttcat
     5761 cgctggaatc agcatggaag tacatcatta tttgtactgt tgatgtcgct tttggtctgt
     5821 tcggtaccgt gctggtatac gccaacgccg ccagcgttat gccgcaggca gaaatggcga
     5881 tattctggag cgaggttctt aagcaatcgt ccttgcttga cccaacatta atgctgttgg
     5941 cctttgtgtt tgtgctaatt ggctttggta ccaaaaccgg gctatttccc atgcacgcct
     6001 ggctgccgga tgctcacagt gaagcgccga gtccggtcag cgccctgctc tccgccgtat
     6061 tgctgaactg cgcgctgttg gtgctgattc gctattacat cattatttgc caagccatcg
     6121 gcagcgattt ccccaaccgg ttgttgctca tcttcggcat gttgtcggtt gccgtggcgg
     6181 catttttcat tctggtacag cgggacatta agcgtctgct ggcgtactcc agcgtggaga
     6241 acatggggct ggtcgcggtg gcgctaggca ttggcgggcc gctgggaatt tttgccgcgc
     6301 tgctgcacac cttaaaccac agtctggcaa aaacgctgct gttctgcggt tccggcaatg
     6361 tactgctcaa gtacggcacg cgcgatctca acgtcgtctg tgggatgctc aaaatcatgc
     6421 catttaccgc cgtgctgttt ggcggcggtg cgctggcgct ggcagggatg ccgcccttca
     6481 acatttttct tagcgaattt atgaccgtta ccgcaggact ggcacgtaat cacctgctga
     6541 ttatcgtcct gctgttattg ctgttaacgc tggtgctggc gggcctggta cggatggctg
     6601 cgcgggtgtt aatggcgaaa ccgccgcagg ccgttaaccg gggtgatctc ggctggttga
     6661 ccacctcgcc aatggtgatt ctgctggtca tgatgctggc gatgggaacg catattccac
     6721 aacctgtcat caggatcctg gcgggcgctt ccactatagt cctctcaggg acgcacgacc
     6781 tgcctgcaca acgtagcacc tggcatgatt ttttgccttc aggcaccgca tctgtttcgg
     6841 agaaacacag tgaacgttaa ttcatcgtca aatagtggcg aagcgattct cgccgccctg
     6901 aaaacgcagt tccccggcgc ggtactggat gaagagcgac aaacgcctga acaggtcacc
     6961 attacggtga aaatcaatct gctgcctgac gttgtacatt atctttatta tcaacatgat
     7021 ggctggcttc cagtcctgtt tggcaacgac gagcggacac ttaacggtca ttacgcggtt
     7081 tattatgccc tttcaatgga aggggccgaa aaatgctgga tcgtggtgaa ggcactggtc
     7141 gatgccgaca gtcgggagtt tccgtcagtc acaccgcgcg tccctgccgc ggtctggggc
     7201 gagcgagaaa ttcgcgatat gtacgggctg attccggttg gcctgccgga tcagcgtcgc
     7261 ctggtgttgc ccgatgactg gccggaagat atgcatccgc tgcacaaaga tgcgatggat
     7321 tatcgactgc gccctgaacc gacgacagat tccgaaacgt atgcgtttat caatgagggc
     7381 aacagcgatg cgcgggtgat ccctgtcggc ccgctgcata tcacctccga tgaaccgggt
     7441 cacttccgct tgtttgtgga tggcgagcaa attgtcgatg ctgattaccg cctgttttat
     7501 gtccatcgag gcatggagaa actggcagaa acgcggatgg gctacaacga agtgaccttc
     7561 ttatcggacc gcgtgtgtgg gatttgcggt tttgcccaca gtgtggccta taccaactcg
     7621 gttgaaaatg cactggggat tgaggtgccg caacgagcgc ataccattcg ctcgattctg
     7681 ctggaagtcg aacggctaca cagtcatttg ctcaaccttg gcctctcctg ccattttgtt
     7741 ggttttgata ccggctttat gcaatttttc cgcgtgcggg aaaagtcgat gacgatggcg
     7801 gaattgctga ccgggtcgcg taaaacctac ggtctgaatc tgattggtgg tgttcgccgc
     7861 gatattctca aagagcaacg tctgcaaacg ctgaaactgg tgcgcgagat gcgcgccgac
     7921 gtgtcggagc tggtagagat gctgcttgct acgccgaata tggaacaacg cactcagggc
     7981 attggcattc tcgaccgaca aatcgcccgt gattatagcc ctgtagggcc gctgatccgc
     8041 ggcagtggtt ttgcccgtga tttgcgcttt gatcacccct acgccgacta cggcaatatt
     8101 ccaaaaacac tgtttacctt caccggcggc gatgttttct cccgcgtgat ggtccgtgtc
     8161 aaagagacgt ttgattcgct ggcaatgctg gaatttgccc tcgacaacat gccggatacc
     8221 ccactgctga ccgaaggctt tagctataaa cctcacgcat tcgcgctggg ctttgttgaa
     8281 gcgccacgcg gtgaagacgt gcactggagc atgctcggtg ataaccaaaa attgttccgc
     8341 tggcgctgcc gtgccgccac ctacgccaac tggccggtgt tgcgttacat gctgcgcggc
     8401 aataccgttt ctgacgcacc gctgattatc ggtagccttg atccctgcta ctcctgtacc
     8461 gaccgtgtga cgctggtaga tgtgcgcaag cgccagtcaa aaaccgtgcc gtataaagag
     8521 atcgaacgct acggcattga tcgtaaccgt tcgccgctga agtaaggaca gaagatgctg
     8581 aagttactga aaactattat gcgcgccgga accgcgacgg tgaaatatcc cttcgcgcca
     8641 ctggaggtca gcccaggctt tcgcgggaaa ccggacctga tgcccagcca atgtattgcc
     8701 tgcggcgcct gtgcttgtcc ggcaaatgcg ctgactatcc agaccgacga ccagcaaaat
     8761 tcgcgcacct ggcagctcta tctggggcgt tgtatttact gcggacgttg tgaagaagtg
     8821 tgcccgacca gagccatcca gcttaccaat aactttgaac tgaccgtcac caataaagcc
     8881 gatctctata cccgcgcgac gttccatcta caacgttgca gccgttgcga acgcccgttt
     8941 gccccgcaaa aaaccgtcgc actggctgct gaattgttgg cacagcaaca aaatgcgcca
     9001 caaaaccgcg aaatgttgcg ggcgcaagcg agcgtctgcc cggagtgcaa acaacgcgcg
     9061 acgctgatca acgacgatac agatgtaccg ctggtggcta aggagcagct atgagtccag
     9121 tgcttacaca acatgtcagc cagcccatca cgctggatga gcaaacgcaa aagatgaagc
     9181 ggcatttgct acaggatatc cgtcgctcag cctacgttta tcgcgtcgat tgcggcggct
     9241 gcaacgcctg tgaaatcgaa atttttgctg ccatcacccc cgtattcgac gcagaacgtt
     9301 ttggcattaa ggttgtttca tcaccgcgtc acgccgatat tttgttattt actggcgcag
     9361 tcacccgggc gatgcgtatg cctgcacttc gggcgtatga gtctgccccc gatcataaaa
     9421 tctgtgtttc ctacggcgcg tgcggtgtcg gcggcggtat tttccacgat ctctacagcg
     9481 tctggggcgg cagcgacacc attgtcccca ttgatgtttg gatccccggc tgcccgccaa
     9541 caccggccgc caccattcac ggtttcgccg tggcgctcgg tttgctgcaa cagaagattc
     9601 acgctgtgga ttatcgcgat cccaccgggg tgactatgca accgttgtgg ccacagatcc
     9661 cgccatcaca gcgtatcgcc attgagcgag aagcgcggcg gctggcgggc tatcgtcagg
     9721 ggcgagaaat ttgcgatcgg ctcctgcgcc atttaagcga cgatcctaca ggaaatcggg
     9781 ttaacacctg gttgcgcgat gccgacgatc cacgtctcaa tagtatcgtt cagcaactct
     9841 ttcgcgtact ccgggggtta catgactgaa gagtgcgggg aaattgtttt ctggacgctg
     9901 cgaaaaaagt ttgtcgccag tagcgacgag atgccggaac accgctctca ggtaatgtat
     9961 tactcgctgg ctatcggcca tcacgttggc gtgattgatt gtctgaatgt cgccttccgc
    10021 tgcccactga cggaaaacga agattggctt gcacaggtcg aagaggagca agcccgacgt
    10081 aagatgctgg gggtgatgac ctttggtgag attgttattg acgccagcca caccgccctg
    10141 ttgacccggg cattcgcgct actggcagat gacgcgacgt ctgtgtggca ggcgcgtagc
    10201 attcaattca ttcatctgtt ggatgaaatt gtgcaggaac cggccatcta tctgatggcc
    10261 agaaaaattg cgtgagaagg atttctcatt aataaggact gttgatggct atgtcagacg
    10321 aggcgatgtt tgccccgcca caaggaataa caattgaagc ggtaaacgga atgctcgcgg
    10381 agcggttagc acagaaacac ggtaaggcgt ctttattacg cgccttcatc ccgatgccgc
    10441 cgccgttcag cccggtacaa cttattgaac tgcatgttat caaaagcaac ttctattacc
    10501 gctaccatga tgatggcagc gatgtgacgg caacaacaga gtatcagggc gagatggtcg
    10561 attattcgcg tcacgccgtc cttctcggca gtagtggaat ggcggagcta cgctttattc
    10621 gtacccacgg cagccgtttt actccctagg attgcacact gtttaactgg ctggcacgca
    10681 ttatcactcc ggttctgcaa tcatggctca atgatgaaga acaacaggtg gcgctgcgtt
    10741 tgctggagaa agatcgcgat catcatcggg tactggttga tattactaat gcagtgctgt
    10801 cacatcttga tctcgacgat ctgatcgctg acgtcgctcg tgagatccat cattttttcg
    10861 gtctggcttc agtcagtatg gtactgggcg atcatcgaaa gaacgagaag tttagcctgt
    10921 ggtgcagcga tctttctgcc tcacattgtg cgtgtctgcc acgcaatatg cctggcgaca
    10981 gtgtattgct gacacaaacg ctacaaaccc gacaaccgac cttgacgcac cgtgcagacg
    11041 atctgtttct ctggcaacgc gacccgttat tactcttact tgcatctaac ggctgcgaat
    11101 ctgcgctcct tataccgctt acctttggca accatacacc gggtgcattg ttgctggcgc
    11161 atacctcttc cactctcttt agtgaggaaa actgccagct actacaacac atagccgatc
    11221 gcatcgctat tgccgttggc aatgccgatg cctggcgtag catgaccgat ttgcaggaaa
    11281 gtttgcagca agaaaactac cagcttagcg agcagctcct ttcgaatctg ggcatcggtg
    11341 acattatcta tcaaagccag gcaatggaag acctgctcca gcaggtagat attgtagcga
    11401 agagcgacag tacggtgttg atttgtggtg aaaccggaac cggcaaagag gtgatcgcca
    11461 gagcgctcca tcaacttagc acgcgacgcg acaaaccgct ggtcaaaatc aactgcgctg
    11521 ccatccccgc cagtcttctg gaaagtgagt tattcggtca tgacaaaggg gcgtttactg
    11581 gtgcgattaa tacacatcgt ggtcgttttg aaattgccga tggcggcacg ttgtttctcg
    11641 atgaaattgg cgatctgccg ttagaacttc agcctaaact gctgcgcgta ttgcaggaac
    11701 gggagattga gcgtctcggc gggagtagaa cgatcccggt gaatgtcaga gtcattgccg
    11761 ccaccaaccg tgatttgtgg caaatggttg aagatcgcca gtttcgcagc aatctctttt
    11821 atcgcctgaa tgtcttccca ttggaattgc cgccgctacg cgaccgtccg gaagatatcc
    11881 ctcttttagc aaaacatttc acgcaaaaaa tggcgcgcca tatgaatcgc gcaattgacg
    11941 ccatcccgac cgaggcgcta cgccagttga tgtcgtggga ctggccgggc aacgtgcacg
    12001 agctggaaaa cgtgattgag cgagcggtac tgctgactcg cggtaacagt ctgaatttac
    12061 atcttaatgt ccgacaaagc cgtttactgc cgacgctaaa tgaagattca gcgcttcgca
    12121 gttcaatggc gcagttgctg cacccgacga cgccagagaa tgacgaagaa gaacgtcagc
    12181 gcattgttca ggtattgcga gaaaccaatg gcattgttgc cgggccccgt ggcgcggcga
    12241 cacgattagg gatgaagcgc accacgctgc tgtcacgaat gcagcgtctg gggatctcgg
    12301 ttcgcgaggt gttgtaatct gcttttgcag gagtatgcat gagaaacaaa ctctctttcg
    12361 acttgcagtt gagcgccaga aaagcggcaa tcgctgaacg gattgccgtc cataaaattg
    12421 cccgcagtaa agtgtcggtc tttttaatgg cgatgtccgc tggcgtgttt atggcgatcg
    12481 gatttacttt ttacctttcc gttatcgccg atgccccgtc ttcacaggca ttaacccatc
    12541 tggtgggcgg cctttgcttt acactcggct ttattttgct ggcggtttgc ggcacagcct
    12601 gttcacctcg tcggtaatga cggtgatagc aaaaagtcgg ggcgttatta gttggcgaac
    12661 ttggctgatt aacgcacttc tggtggcctg tggtaatctg gcaggtattg cctgtttcag
    12721 tttgttaatc tggttttccg ggctggtgat gagtgaaaac gcgatgtggg gagtcgcggt
    12781 tttacactgc gccgagggca aaatgcatca tacatttact gaatctgtca gcctcggcat
    12841 tatgtgcaat ctgatggttt gcctggcgct gtggatgagt tattgcgggc gttcgttatg
    12901 cgacaaaatc gtcgccatga ttttgcccat caccctgttt gtcgccagtg gctttgagca
    12961 ctgtatcgcc aatttgtttg tgattccgtt cgccattgcc attcgccatt tcgccccccc
    13021 ccttctggca actggcgcac agtagcgcag acaattttcc ggcactgacg gtcagccatt
    13081 ttattaccgc caatctgctc ccggtgatgc tgggtaatat tatcggcggt gcagtgctgg
    13141 tgagtatgtg ttatcgggct atttatttac gtcaggaatc ctgaaaaatc agcccggcga
    13201 aacagttcgt cgggctgaag attattcttg cgcgatttgc ccatcgggcc aggcgtggat
    13261 cacggctttg atcagcgtcg ccaatggaat ggcgaagaat acgccccaga atccccacaa
    13321 accaccgaag atcaccaccg ataaaataat caccagcgga tgcaggttaa ccgcttcgga
    13381 gaacaacacc ggtactagca ggttgccgtc cagcgcctga ataatcagat acaccgcgaa
    13441 gcagctccag aattccgtgc ctgcgccaaa ctggaatagc gccacgccaa ccaccggaat
    13501 ggtcaccaca aatgcgccaa tgtacggaat aagaaccgag aagccgacca gcaccgccag
    13561 cagcagcgaa tagttcagcc caaagagcaa gaaccccagc caggtggcga tccccaccac
    13621 gatcatctcc agcactttgc cgcggatata gttggtgatt tgttgattca tctccttcca
    13681 cacctgtcct gccagtccac ggttgcgcgg cagcacccga cgaacggcgt tcagcatctg
    13741 ctctttgtct ttcagcagga agaagaccat caatggcacc agcaccagat agacggcaat
    13801 ggtcagcaaa ccgaccagcg aggcgaggga aattttcacc accgaatcgc ccatggtcag
    13861 catccgactg cgcatatttt cggccattgc atcaataatg cccgcgtcca ttaacgccgg
    13921 atagcggcgc ggcaacgtgg cggcaaagtc agaaagctta ttgagcatcc ccggcatatc
    13981 gcggattaag tagatgccct gttgccaggc gataggcagt accacgaacg ccatcagtag
    14041 caatataccg acaaaaacca ccaatacaat cgacgtcgcc cagcggcggg agcagccaat
    14101 agattgcagg cgcacggttg gccattccag caaataggcc agcacaatag ccaccagcaa
    14161 cggagcaagc aggccactaa agaaaaagat aatgccaaat ccggcaacta aaataaccag
    14221 caaggcaatc gcttccgggt cgctaaaacg gcggcgatac cattgcatca acatttcgag
    14281 cataaaaacc ttccctgaac ctcaagagcg ggattgcgat ccgcaattgt atcgaaatgt
    14341 cacaaaaaag acttcgcttt ttatgacgga ttcaggaaac tgaaaagtca tttgagtggg
    14401 ctaatcttcg ccgttacact caaaggcggc gcggtgggaa cgatatttca cagtatcggt
    14461 caaatgacta tcttcagaaa tacaggatag aggttatgtt caggcagttg aaaaaaaacc
    14521 tggttgcaac cctcattgct gctatgacca ttggtcaggt agccccggcg tttgccgaca
    14581 acgcagacac cttgccggat atgggaacct ccgcaggaag cacgctttcc attggtcagg
    14641 aaatgcagat gggcgactat tatgtccgcc agctacgcgg cagcgcgccg ttaattaatg
    14701 acccgctgtt aacgcaatat attaattcgc tggggatgcg tctggtttcg catgccaatt
    14761 cggttaagac accgtttcat ttttttctaa tcaacaacga cgaaattaac gcctttgctt
    14821 tctttggcgg caacgtggtg ctgcactctg ccctgttccg ttattccgat aacgaaagtc
    14881 aactggcttc agttatggcg cacgaaatct cccacctcac ccaacgtcac ctggcgcgag
    14941 cgatggaaga tcagcagcgc agcacgccgc tgacctgggt cggcgcgtta ggttctattt
    15001 tactggcgat ggccagtccg caggcgggga tggcggcgct gaccggtaca ctggcgggaa
    15061 cgcgtcaggg gatgatcagt ttcacccagc aaaatgaaca ggaagcggac cgcattggta
    15121 ttcaggtgct gcaacgctcg ggattcgatc cgcaggcgat gccaaccttc ctcgaaaaat
    15181 tactcgatca ggcgcgttac tcctcgcgcc cgccggaaat tttattgact cacccgttgc
    15241 cggaaagtcg tctggcagat gcccgcaacc gtgctaatca gatgcgaccg atggtggtgc
    15301 agtcgtcgga agatttctat ctggcgaaag cgcgcacact ggggatgtat aattccggac
    15361 gtaaccagct caccagtgat ttgctggatg aatgggcgaa aggaaacgtt cgtcagcaac
    15421 gagcggcgca atatggtcgt gctttacagg cgatggaagc caataaatac gacgaggcgc
    15481 gtaaaacgct gcaaccgtta ctggcggcag aacctggcaa cgcatggtat ctcgatctgg
    15541 ctaccgatat cgatcttggg caaaacaaag ccaatgaggc aatcaatcgc ctgaaaaatg
    15601 cccgtgattt gcgcaccaat ccggtgttgc agctcaacct ggcaaacgct tatctgcaag
    15661 gcggtcaacc acaagaagcg gccaatattc tcaatcgcta cacctttaat aataaagatg
    15721 acagcaacgg ctgggattta ctggcacagg cggaagccgc gctaaataac cgcgatcagg
    15781 agctggctgc gcgagcagaa ggttatgcgc tcgccggacg actcgatcag gccatttcgc
    15841 tgttgagtag cgccagttcg caggtgaaat taggcagcct gcaacaagcg cgttacgatg
    15901 cgcgcatcga ccagttgcgc cagctgcagg aacgctttaa gccttatacc aagatgtaat
    15961 tcgcattaaa ggaagaacaa tgaccaaaca ggtaaaaatc taccataacc cacgctgttc
    16021 aaagagccgg gaaacgctga acctgctgaa agaaaacggc gtggagccag aagtggtact
    16081 ctaccttgag acacccgccg atgcggcaac gctgcgcgat ttgctgaaaa tgctggggat
    16141 gaatagcgcc cgtgaattga tgcgccagaa agaggatctt tataaagaac tgaacctggc
    16201 tgacagttcg cttagcgaag aggcgctgat tcaggcaatg gtggataatc cgaagctgat
    16261 ggagcgcccg attgtggtcg cgaatggcaa agcgcggatt ggtcgtccac cggagcaggt
    16321 actggaaatc gtgggttaag atgtgctcca tcgctagttg aagcacattg ccggatgcga
    16381 cgcttgccat gtcttatccg gcctacgaat actatggatt aacttcgcgt agttcggata
    16441 aggcgttcgc gccgcatccg acaataaaca ccttatctac aacttcagaa tttctttcac
    16501 aaacggaatg gtcagcttac gttgcgcggt aatcgacgca cgatccaact gatccaacgt
    16561 cataaatagc gtgcgcattt ctctgtcgag ccgcttcagc aagaaacgcc ccacatcttc
    16621 cggcagttca aaaccacgca aacgcgcgcg taactgtagc gcctgcaact tatcttcatc
    16681 agaaagtggc tgcaatttgt agatctgccc ccagtcgagt cgcgacgcga gatccggtaa
    16741 tcccagattc aactgccgcg gtggacgatc gccggtgatc aacaaccgtg ttttgcccga
    16801 ttccagaatt cgattgtaga gatcgaaaat cgccatctcc cacaactcat cgcctgcaat
    16861 acactcaatg ttgtcgatac aaaccagcga caaatgctcc ataccgtcga gcacttccgg
    16921 aacaaaccaa gtgcgtttat ccagcgggac atagcccacc gcatcgccac gctgcgacaa
    16981 ttccgcgcaa gccgcgtgca gcagatggct gcgccccgcg ccttcgcgtg cccagagata
    17041 gatgtaaccg ctatgttcct gacgcagcac gttttgcagc gcggccagta aagaggagtt
    17101 atcccccggc cagaaacttg caaaggtttc gtcgtcagga agataaagtg gcaaagagag
    17161 ctgtgccggt gtgttcagag atacctcaac caggatttca caaaatcgcg agaagtttac
    17221 cacagaatcc catgatgttt gaaccgggca gcaacactgc ccggtcggta cattatttgt
    17281 ctgttatatc cgcctcttct gcgtccagca ccacttcttc agggcgcagc acactgatca
    17341 gtttgaaaat caaacttaag ccgataccga cgatggtcgc cagcgccata ccttttaact
    17401 ccgccgcgcc gatgtttacc ttcgcgccac tgacgccgat gatcaaaatc acggaagtca
    17461 ggatcaggtt ctgtgctttg ttgtaatcca ctttcgattc gatcaaaaca cgaataccgg
    17521 aagcaccgat gacaccataa agcagcagcg aaacgccgcc catcaccggc aatgggatca
    17581 tctggatagc ggcagccagt ttaccgacgc aggaaagcag gatagcgaaa atcgccgccc
    17641 cgccgataac ccaggtactg taaacacggg tgatcgccat cacgccaatg ttttctccgt
    17701 aagtggtatt tggcgtggag ccaaagaagc cggagatcac ggtcgacagg ccgttagcaa
    17761 acatcgaacg gtgcagacct ggatcgcgca gcagatcttt tttgacgata ttagccgtta
    17821 ctaccaggtg ccctacgtgt tcggcaataa ccactaacgc cgctggcaga atagtcagaa
    17881 tggcaaacca ctcgaagcgc ggcgtataga gggttggcag cgcaaaccag tgagcattaa
    17941 taatcggcgt ggtatcgaca attcccattg cgaaagagag cgcgtagccc accagcacgc
    18001 caattaaaat cgggataatt gccaggaaac cacgaaacag cacggaacct aaaaccgtga
    18061 ccgccagggt ggtaatagag atgatgatgg ttttggagtc tggcgtttgc ccttcagccg
    18121 ggagtaaacc cgccataccg gcagctacgc ccgccagctc cagaccgatg acggcaacga
    18181 ttgcgcccat tgccgcaggt ggaaacagca cgtccagcca gccggtcccc gctttcttca
    18241 cgataaaaga aaccaggcag aacagcacgc cgcacataat aaagccgccc agcgcgactt
    18301 cataccctaa cggcaacagt aacaataccg gtgaaataaa ggcaaagctg gaaccaagat
    18361 aagccggaat tttcccttta cagatgaaga gatacagcag cgttccaata ccgttaaata
    18421 acagtacagt cgccgggtta atatgaaata agacgggcac caggacggtt gcaccaaaca
    18481 tggcgaacaa atgttgcaaa ctaagcggga ttgtctgtaa aagtggcggt ctttcactca
    18541 ccccgatagc acggcgcgtc atagtattat cctctgtatt atgtgttata ggcgctttac
    18601 tcaaaaaaaa gccgactctt aaagtcggct ttaattattt ttattcttta tttcgtacca
    18661 aagattttgt caccggcatc gccgaggccc ggaataatgt atccgtgctc gttcagtccc
    18721 tgatcaatcg atgcggtata cagttcgacg tccgggtgcg ctttttccag cgcagcgata
    18781 ccttctggcg cagcgaccag caccagaact ttgatgctgc tgcagcccgc ttttttcagc
    18841 aggtcgatgg tcgcgataac ggaaccaccg gttgccagca ttgggtcaac gatcagcgcc
    18901 atacgctcat cgatgttaga aaccagtttc tggaagtacg gtaccggctc cagcgtttct
    18961 tcattacggt acataccgac aacgctgatg cgcgcgctcg gaacattttc cagcacaccg
    19021 tccatcatac caagacccgc acgcagaatt ggcacaacgg taattttctt acctttgatc
    19081 tggtcgattt ctaccgggcc gttccagcct tcgatagtta ctttttccgt ttcgaggtcg
    19141 gcggtcgctt cgtaagtcag caggctaccc acttcggaag cgagttcgcg aaagcgcttg
    19201 gtgctgatat cttgctcacg catcagtccc agcttgtgtt tgacgagtgg gtgtttgact
    19261 tccacgatct tcatactctt tctcctttga ggggcagcca caaaaaaatc gacggattat
    19321 acctcctttc ttcaaggcgg caatattctt ttcgttgact ttagtcaaaa tgataacgat
    19381 ttgagataaa gttattttat attcaaatgg ttatgaaaga agatcattcc atccgaaaac
    19441 taacctttgc cctggcacaa gtcttctttc gccgcgcgtc tggggaaaag acgtgcaaaa
    19501 aggttgtgca aagcagcctc gcaaacgttt gctttccctg ttagaattgc gccgaatttt
    19561 atttttctac cgcaagtaac gcgtggggac ccaagcagtg accgataaaa cctctcttag
    19621 ctacaaagat gccggtgttg atattgacgc gggtaatgct ctggttggaa gaatcaaagg
    19681 cgtagtgaag aaaacgcgtc gtccggaagt gatgggcggt ctgggcggct tcggtgcgct
    19741 gtgtgcattg ccgcaaaaat atcgtgaacc cgtgctggtt tccggcactg acggcgtagg
    19801 taccaagctg cgtctggcaa tggacttaaa acgtcacgac accattggta ttgatctggt
    19861 cgccatgtgc gttaatgacc tggtggtgca aggtgcagaa ccgctgtttt tcctcgacta
    19921 ttacgcaacc ggaaaactgg atgttgatac cgcttcagcg gtgatcagcg gcatcgcgga
    19981 aggttgtctg caatcgggct gttcactggt gggtggcgaa acggcagaaa tgccggggat
    20041 gtatcacggt gaagattacg atgtcgcggg tttctgcgtg ggcgtggtag aaaaatcaga
    20101 aatcatcgac ggctctaaag tcagcgacgg cgatgttctg attgcactcg gttccagcgg
    20161 tccgcactcg aacggctatt cgctggtgcg caaaattctt gaagtcagcg gttgtgatcc
    20221 gcaaaccacc gaacttgatg gtaagccatt agccgatcat ctgctggcac cgacccgcat
    20281 ttacgtgaag tcagtgctgg agttgattga aaaggtcgat gtgcatgcca ttgcgcacct
    20341 gaccggcggc ggcttctggg aaaacattcc acgcgtattg ccagataata ctcaggcagt
    20401 gattgatgaa tcttcctggc agtggccgga agtgttcaac tggctgcaaa cggcaggtaa
    20461 cgttgagcgc catgaaatgt atcgcacctt caactgcggc gtcgggatga ttattgccct
    20521 gcctgctccg gaagtggaca aagccctcgc cctgctcaat gccaacggtg aaaacgcgtg
    20581 gaaaatcggt atcatcaaag cctctgattc cgaacaacgc gtggttatcg aataatgaat
    20641 attgtggtgc ttatttccgg taacggaagt aatttacagg caattattga cgcctgtaaa
    20701 accaacaaaa ttaaaggcac cgtacgggca gttttcagca ataaggccga cgcgttcggc
    20761 cttgaacgcg cccgccaggc gggtattgca acgcatacgc tcatcgccag cgcgtttgac
    20821 agtcgtgaag cctatgaccg ggagttgatt catgaaatcg acatgtacgc acccgatgtg
    20881 gtcgtgctgg ctggttttat gcgcattctc agcccggcgt ttgtctccca ctatgccggg
    20941 cgtttgctga acattcaccc ttctctgctg ccgaaatatc ccggattaca cacccatcgt
    21001 caggcgctgg aaaatggcga tgaagagcac ggtacatcgg tgcatttcgt caccgatgaa
    21061 ctggacggtg gcccggttat tttacaggcg aaagtcccgg tatttgctgg tgatacggaa
    21121 gatgacgtca ccgcccgcgt gcaaacccag gaacacgcta tttatccact ggtgattagc
    21181 tggtttgccg atggtcgtct gaaaatacac gaaaacgccg cgtggctgga tggtcaacgt
    21241 ctgccgccgc agggctacgc tgccgacgag taatgccccc gtagttaaag cgccagctct
    21301 gccgctggcg tttttcaatt cacctgtaaa tcgcaagctc cagcagtttt tttccccctt
    21361 ttctggcata gttggacatc tgccaatatt gctcgccata atatccaggc agtgtcccgt
    21421 gaataaaacg gagtaaaagt ggtaatgggt caggaaaagc tatacatcga aaaagagctc
    21481 agttggttat cgttcaatga acgcgtgctt caggaagcgg cggacaaatc taacccgctg
    21541 attgaaagga tgcgtttcct ggggatctat tccaataacc ttgatgagtt ctataaagtc
    21601 cgcttcgctg aactgaagcg acgcatcatt attagcgaag aacaaggctc caactctcat
    21661 tcccgccatt tactgggcaa aattcagtcc cgggtgctga aagccgatca ggaattcgac
    21721 ggcctctaca acgagctatt gctggagatg gcgcgcaacc agatcttcct gattaatgaa
    21781 cgccagctct ccgtcaatca acaaaactgg cttcgtcatt attttaagca gtatctgcgt
    21841 cagcacatta cgccgatttt aatcaatcct gacactgact tagtgcagtt cctgaaggat
    21901 gattacacct atctggcggt ggaaattatc cgtggagaca ccatccgtta cgcgctgctg
    21961 gagatcccat cagataaagt gccgcgcttt gtgaatttac cgccagaagc gccgcgtcga
    22021 cgcaagccga tgattcttct ggataacatt ctgcgttact gccttgatga tattttcaaa
    22081 ggcttctttg attatgacgc gctgaatgcc tattcaatga agatgacccg cgatgccgaa
    22141 tacgatttag tgcatgagat ggaagccagc ctgatggagt tgatgtcttc cagtctcaag
    22201 cagcgtttaa ctgctgagcc ggtgcgtttt gtttatcagc gcgatatgcc caatgcgctg
    22261 gttgaagtgt tacgcgaaaa actgactatt tcccgctacg actccatcgt ccccggcggt
    22321 cgttatcata attttaaaga ctttattaat ttccccaatg tcggcaaagc caatctggtg
    22381 aacaaaccac tgccgcgttt acgccacatt tggtttgata aagcccagtt ccgcaatggt
    22441 tttgatgcca ttcgcgaacg cgatgtgttg ctctattatc cttatcacac ctttgagcat
    22501 gtgctggaac tgctgcgtca ggcttcgttc gacccgagcg tactggcgat taaaattaac
    22561 atttaccgcg tggcgaaaga ttcacgcatc atcgactcga tgatccacgc cgcacataac
    22621 ggtaagaaag tcactgtggt ggttgagtta caggcgcgtt tcgacgaaga agccaacatt
    22681 cactgggcga agcgcctgac cgaagcaggc gtgcacgtta tcttctctgc gccggggctg
    22741 aaaattcacg ccaaactgtt cctgatttca cgtaaagaaa acggtgaagt ggtccgttac
    22801 gcacacatcg ggaccgggaa ctttaacgaa aaaaccgcgc gtctttatac tgactattcg
    22861 ttgctgaccg cagatgcgcg tatcaccaac gaagtacggc gggtatttaa ctttattgaa
    22921 aacccatacc gcccagtgac atttgattat ttaatggtgt caccgcaaaa ctctcgccgt
    22981 ctgttatatg aaatggtaga ccgcgaaatc gccaacgcgc agcaagggct gcccagtggt
    23041 atcaccctga agctaaataa ccttgtcgat aaaggcctgg ttgatcgtct gtatgcggcc
    23101 tccagctccg gcgtaccggt taatctgctg gttcgcggaa tgtgttcgct gatccccaat
    23161 ccggaaggca ttagcgacaa cattcgtgcc atcagtattg ttgaccgtta ccttgaacat
    23221 gaccgggttt atatttttga aaatggcggc gataaaaagg tctacctttc ttccgccgac
    23281 tggatgacgc gcaatattga ttatcgtatt gaagtggcga caccgctgct cgatccgcac
    23341 ctgaagcagc gggtgctgga catcatcgac atattgttca gcgatacggt caaagcacgt
    23401 tatatcgata aagaactcag taatcgctac gttccccgcg gcaatcgccg caaagtacgg
    23461 gcgcagttgg cgatttacga ctacatcaaa tcactcgaac aacctgaata accctatgcc
    23521 aatacacgat aaatcccctc gtccgcagga gtttgctgcg gtcgatcttg gttcaaacag
    23581 ttttcacatg gtcatagccc gtgtggtaga tggtgccatg cagattattg gccgcctgaa
    23641 acagcgagtg catctggcgg acggcctggg gccagataat atgttgagtg aagaggcaat
    23701 gacgcgcggt ttgaactgtc tgtcgctgtt tgccgaacgg ctacaagggt tttctcctgc
    23761 cagcgtctgt atagtcggca cccatacgct gcgtcaggcg ctgaacgcca ctgactttct
    23821 gaaacgcgtg gaaaaggtca ttccctaccc gattgaaatt atttccggta atgaagaagc
    23881 ccgtctgatt tttatgggcg tggaacatac ccaaccggag aaaggtcgca aactggttat
    23941 tgatattggc ggcggatcta cggaactggt gattggtgaa aatttcgaac cgattctcgt
    24001 tgaaagccgc cggatgggtt gtgtcagctt tgcccagctt tacttccctg gcggggtcat
    24061 caataaagag aattttcagc gcgctcgtat ggcggcagca caaaaactgg aaactttaac
    24121 ctggcaattc cgtattcagg gctggaacgt ggcaatgggc gcttccggta ccataaaagc
    24181 cgcccatgaa gtgttaatgg aaatgggcga gaaagacggg ataattaccc cggaacgtct
    24241 ggaaaaactg gtaaaagaag ttttacgtca ccgtaatttc gcatcgctga gtttaccggg
    24301 tctttccgaa gagcggaaaa cagtcttcgt tcctggactg gcgattttat gcggtgtgtt
    24361 tgatgcttta gccatccgtg aactgcgcct ttctgacggg gcgttacgcg aaggcgtact
    24421 gtacgaaatg gaaggacgtt tccgtcatca ggatgtgcgt agtcgcaccg ccagcagcct
    24481 cgccaaccag tatcacatcg acagcgaaca ggcccgacgg gtgctggata ccactatgca
    24541 aatgtacgaa cagtggcggg aacagcaacc gaagctggcg catccgcaac tggaggcgct
    24601 actgcgatgg gccgccatgc tgcatgaggt cgggttgaat atcaaccaca gcggtttgca
    24661 tcgccactcc gcttatattc tgcaaaacag tgacttgccg ggttttaatc aggaacagca
    24721 gctgatgatg gcgacactgg tgcgctatca ccgcaaagcg attaaactcg acgatctgcc
    24781 gcgctttacc ttgtttaaga agaaacagtt cctgccactg attcagctat tgcgccttgg
    24841 cgtattactc aacaatcaac gtcaggcaac caccacaccg ccaacattga cactgattac
    24901 tgatgacagt cactggacac tgcgtttccc gcatgactgg tttagtcaga atgcgttggt
    24961 actgcttgat ctggaaaagg agcaagaata ctgggaaggc gtggctggct ggcggttgaa
    25021 aattgaagaa gaaagtacac ctgaaatcgc cgcttaatgc tttgcgggcc gacgagaaat
    25081 gtcggcccgc attattcagg cactttcgcg aatgggttc
//
LOCUS       DAJVUY010000049        25003 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.049, whole genome shotgun sequence.
ACCESSION   DAJVUY010000049 DAJVUY010000000
VERSION     DAJVUY010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25003
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.049"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..808
                     /locus_tag="OQQ72_001788"
     CDS             <1..808
                     /locus_tag="OQQ72_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HCS2011548.1"
                     /translation="PRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTG
                     GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN
                     LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF
                     AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN
                     GFSYWIYGCMGVLAALFMWKFAPETKGKTLEELEALWEPETKKTQQTATL"
     gene            complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ72_001789"
     CDS             complement(852..1250)
                     /gene="psiE"
                     /locus_tag="OQQ72_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HCS2011549.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            1520..1798
                     /locus_tag="OQQ72_001790"
     CDS             1520..1798
                     /locus_tag="OQQ72_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011550.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            complement(1845..3941)
                     /locus_tag="OQQ72_001791"
     CDS             complement(1845..3941)
                     /locus_tag="OQQ72_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS2011551.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNVGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(3956..4678)
                     /locus_tag="OQQ72_001792"
                     /pseudo
     CDS             complement(3956..4678)
                     /locus_tag="OQQ72_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
     gene            complement(4675..5313)
                     /locus_tag="OQQ72_001793"
     CDS             complement(4675..5313)
                     /locus_tag="OQQ72_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HCS2011552.1"
                     /translation="MKRPALILICLLLQACSATTKELGNSLWDSLFGTPGVQLTDDDI
                     QNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKILLGGDNLI
                     EVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGTDTVKVGSDET
                     LVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ"
     gene            complement(5427..5669)
                     /locus_tag="OQQ72_001794"
     CDS             complement(5427..5669)
                     /locus_tag="OQQ72_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011553.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ72_001795"
     CDS             complement(6131..7780)
                     /gene="pgi"
                     /locus_tag="OQQ72_001795"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCS2011554.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ72_001796"
     CDS             8305..9654
                     /gene="lysC"
                     /locus_tag="OQQ72_001796"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HCS2011555.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            9906..10178
                     /locus_tag="OQQ72_001797"
     CDS             9906..10178
                     /locus_tag="OQQ72_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
                     /protein_id="HCS2011556.1"
                     /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRVLTNSETNSIKK
                     EYIDKLMVEREAEAKKARQLKKKQAYKPDPEASFSWSANTSTRGRR"
     gene            complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ72_001798"
     CDS             complement(10311..11183)
                     /gene="rluF"
                     /locus_tag="OQQ72_001798"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCS2011557.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            11531..12478
                     /locus_tag="OQQ72_001799"
     CDS             11531..12478
                     /locus_tag="OQQ72_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HCS2011558.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            12548..13354
                     /locus_tag="OQQ72_001800"
     CDS             12548..13354
                     /locus_tag="OQQ72_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS2011559.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG
                     DGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALVWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            13364..13771
                     /locus_tag="OQQ72_001801"
     CDS             13364..13771
                     /locus_tag="OQQ72_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HCS2011560.1"
                     /translation="MVNAIFCAHGKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLEKLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDELCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            13771..14265
                     /locus_tag="OQQ72_001802"
     CDS             13771..14265
                     /locus_tag="OQQ72_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HCS2011561.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIDTL
                     NIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
     gene            14331..15128
                     /locus_tag="OQQ72_001803"
     CDS             14331..15128
                     /locus_tag="OQQ72_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HCS2011562.1"
                     /translation="MEISTLQIIAIFLFSCIAGMGSVLDEFQTHRPLIACTVIGLILG
                     DLKTGIILGGTLELIALGWMNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPV
                     AAAGQVLTVFARTITVVFQHAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSL
                     FVSADMVSNMLSAIPEFVTRGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGG
                     YLDLSLLAFGGVGVIMALVYIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            15139..15981
                     /locus_tag="OQQ72_001804"
     CDS             15139..15981
                     /locus_tag="OQQ72_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000437910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HCS2011563.1"
                     /translation="MEQRKITRSDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIK
                     RLYPLKEDQVAALRRHLVFFNTTPAVCGPVIGVTAAMEEARANGAEIDDGTINGIKVG
                     LMGPLAGVGDPLVWGTLRPITTALGASLALSGNILGPLLFFFIFNAVRLAMKWYGLQL
                     GFRKGVNIVSDMGGNVLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTHAADGST
                     VTMTVQNILDQLCPGLLALGLTLLMVRLLNKKINPVWLIFALFGLGIIGNALGFLSRF
                     FAPA"
     gene            16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ72_001805"
     CDS             16015..17244
                     /gene="sorE"
                     /locus_tag="OQQ72_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-sorbose 1-phosphate reductase"
                     /protein_id="HCS2011564.1"
                     /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK
                     EANLGENHKKVPDDVATNPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR
                     PDCPGYSFPWVGGEATHVVIPNEVMEQDCLLAYDGETYFEGSLVEPLSCVIGAFNANY
                     HLQEGSYNHTMGIRPQGRMLILGGTGPMGLLAIDYALHGPVNPSQLVITDTDNDKLSY
                     ARKHYPSEPQTLIHYLNAADAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD
                     GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV
                     VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALAAILARHQGIWS
                     GEAEQYLLTHAEAISHD"
     gene            17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ72_001806"
     CDS             17627..18316
                     /gene="pepE"
                     /locus_tag="OQQ72_001806"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCS2011565.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(18407..20038)
                     /locus_tag="OQQ72_001807"
     CDS             complement(18407..20038)
                     /locus_tag="OQQ72_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HCS2011566.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTAALTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGRDEY"
     gene            complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ72_001808"
     CDS             complement(20258..23941)
                     /gene="metH"
                     /locus_tag="OQQ72_001808"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HCS2011567.1"
                     /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD
                     WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAE
                     INFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLV
                     AAYCESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG
                     LPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP
                     EIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEAQDVARQQVE
                     NGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQG
                     KGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKIL
                     TEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS
                     FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRR
                     DDGTERLLELAEKYRGSKTDDTDNAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEA
                     RQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK
                     EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNA
                     DLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVY
                     VQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDF
                     AFDWQAYTPPVAHRLGVQEVEASIETLRNCIDWTPFFMTWSLAGKYPRILEDEVVGVE
                     AQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLR
                     QQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMV
                     KALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHT
                     EKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYA
                     RRKGMSVSDVERWLAPNLGYDAD"
     gene            24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ72_001809"
     CDS             24141..24965
                     /gene="iclR"
                     /locus_tag="OQQ72_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418442.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate bypass operon transcriptional
                     repressor IclR"
                     /protein_id="HCS2011568.1"
                     /translation="MVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWIAESNGSV
                     ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAFMVGSSFLQSRNLL
                     AIVHPILRNLMEESGETVNMEVLDQSDHEAIIIDQVQCTHLMRMSAPIGGKLPMHASG
                     AGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTRKRGYSFDDEEHAL
                     GLRCLAACIFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR"
BASE COUNT         5879 a         6611 c         6534 g         5979 t
ORIGIN      
        1 tcctcgctgg ctgatgtcac gcggcaagca agaacaggcg gaaagtatcc tgcgcaaaat
       61 tatgggcaac acgcttgcaa ctcaggcagt acaggaaatt aaacactccc tggatcatgg
      121 ccgcaaaacc ggtggtcgtc tgctgatgtt tggcgtgggc gtgattgtca tcggcgttat
      181 gctctccatc ttccagcaat ttgtcggcat caatgtggtg ctgtactacg cgccggaagt
      241 gttcaaaacg ctgggggcca gcacggatat cgcgctgttg cagaccatta ttgtcggagt
      301 tatcaacctc accttcaccg ttctggcaat tatgacggtg gataaatttg gtcgtaagcc
      361 actgcaaatt atcggcgcac tcggaatggc aatcggtatg tttagcctcg gtaccgcgtt
      421 ttacactcag gcaccgggta ttgtggcgct actgtcgatg ctgttctatg ttgctgcctt
      481 tgccatgtcc tggggtccgg tatgctgggt actgctgtcg gaaatcttcc cgaatgctat
      541 tcgtggtaag gcgctggcaa tcgcggtggc ggcccagtgg ctggcgaact acttcgtctc
      601 ctggaccttc ccgatgatgg acaaaaactc ctggctggtg gcccatttcc acaacggttt
      661 ctcctactgg atttacgggt gtatgggcgt tctggcagca ctatttatgt ggaaatttgc
      721 cccggaaacc aaaggtaaaa cccttgagga gctggaagcc ctctgggaac cggaaacgaa
      781 gaaaacacaa caaactgcta cgctgtaatc ttcctgtcca gcacgccgcg ccagttcggc
      841 gtgctgtctt tttactcccg cttcagccgt ttcgaattac acagccacag agtgatcacc
      901 agtaacagga tcgcagccga gtagatcaac acatccagtg gcgatttatg atcgacgatg
      961 atcaagcgca caatggcggt gatcccaata tagacaaagt aacgtagcgg gaagtgaaaa
     1021 ccggactgaa agtacttcac aatcagcgcg ataaattcga aatagagaaa gtaaaccacc
     1081 agctcatatt tgctggtttg ttctggcgcg aacagcacat ctgccagatg caccgtttct
     1141 ttgccgagga agacaaccaa aatcaggccg aggcacagca ggccaagatt gagtacggtc
     1201 tgcaaaatgg tggagataaa ctccacgcgc ggacgagaga gtgacgtcat agcagtacct
     1261 ccttcacagt ggcgagcttc ctgtataacg caaaaatgtg acggagatct atattttttg
     1321 tgtatgtttt gttcaacctg gatttggagc gcgcctccac caaagccgga tatacctacc
     1381 cgtaggccgg ataagccgcg cctggcggcg catccggcaa gacaaaccgc acccaagccg
     1441 gtaattcaaa aatcacccat tcaggtgatt cccagccacc agcaatgcgc gaaaaatcga
     1501 caatgttcct ctggaacaaa tgaaacgtaa cctgataaag gtggtaaaaa tgaagcctta
     1561 ttttgctgct ttgatgttat cagtctctgt tcttcctgct tatgctggtc cgctcggtac
     1621 tgctgataaa gccgacctac cgcaaagcaa tgtctccagc ccaatgatgg cccagtcgct
     1681 caggcaacca gacctgcaac cgatatcgac ggacaggaag acagaatgtt ttcgccttta
     1741 cacaccagat cgcaaaccgg gggtgaactg cgttcctgat ggctcgacag gccattaaga
     1801 atgaaggtgc cagtgagtgc gaaaactggc acctttccca tgacttagcg gaaattgacg
     1861 ctacggtcgc tggtcatgtc atacaactgg aacttacgcc caagttgctg accaccgtca
     1921 cgcgtcagcg gcgtccagcc aatcgccgca cggctgcgtg tcgggccaga cgagaagaga
     1981 tccaacggta ccgagacata cacgcctttg gtgaagtccc cttcgccgta ctcctctttc
     2041 aaaacgttgg tgatcgtggc atagccaccc accaccacgc cgctgtcaaa gcgtttggcg
     2101 atctccagcg tgccgccttt atcccctgcc agatactgcc cgacgctggc tttcaccaac
     2161 acgtcctggg cgaaagatgg cgtccagtag gcggtcagat gtccggtttt cacgctgtag
     2221 tcggtgaatt tcatcatatc ttttgcacta cgccagtcgc gctgtttaac gtagttggca
     2281 tccagaccaa acgcccagtt actgtccagc ggacgataca acacttcggc ccccgcaccg
     2341 ccaaacatgg tttcgagata acctccatag acctgaccgt agaagccgtt gcccagatgc
     2401 tggaagtagt tggcttgcag gttattcaca tagacatcgt tctgcacata ctcgcgcaca
     2461 tgggtacgaa cgcgcggtaa gtgcgagtcc tgcggcggat tggtgtagtt aaacttgtcg
     2521 tagttgttgg caagatttgc aaacaggctg ccggtggtca gcagatggtc cgtcagccac
     2581 aaatctgcca ttcccatcac gcccagctga tacatgtaaa agttttccgg gccaccgacc
     2641 gactggttca gcaccggatc gatatggaaa tcaaagcgtg atttgtcgat ataccagccc
     2701 tgctcggtgg actgcggaac cactggctcg acgcgttttt gcgccagctt cgtttcgtgg
     2761 cccaacggct ctccggcgag atgatttttc aggctggcga catcggtttc cgtcgtcacc
     2821 tgcggcatgt taagacgatt ttccgtaatg cggatcgttt tgatcccatc cggcagatcg
     2881 ttcatcacga tccgattagc acggatgatc ccttcgcgcg aatcacgata tttcacctgc
     2941 tcgccggtga catacagcgt atcgcctttc gcctggatct gcggatcggc aagtccgaca
     3001 ttgtatttca acagcgttaa ctgattcgcc accaccgaat gctgcaaaat ggcatcctgc
     3061 ggctgcggtt gatattgcgg gcgggcgtta tcgttgtaag acgggcgcag atcgttaaag
     3121 ttggtgcgca gcgtgacgcc aaacataaag gtgttgccac gttcatagct aaggttaacg
     3181 tcggcccaat cggtaacgcg ataaatcgca ccgacgttaa acttactttt ttgctccagc
     3241 ttcccggcaa aatcctgctg ataattattg ccttcatact ccagtttcag gcgcagcggt
     3301 tgccagggcg tctggtattc cacgccgcca aacagtgagg caggaccgtg gaacatctgg
     3361 ctaccgtcga tagatcccgc ctgtttgtag ctgttatcgc gatagcaata tttatcactg
     3421 gctgaacaga gcggattttt cacattaccg ctggtgccca gataacccca gcccaggccg
     3481 agcgtaaaat cgaacggccc ccaggctttg ctggcaacaa gatattccgc atcaaacagc
     3541 cccgtaccgc cgatatccct cgcaccaacc gccacttgcg gcagccagta actctcttcc
     3601 cacaaacgca gtttgagatc gaaggcttta tctttatacg tttgatcgcc agagaacgct
     3661 tcgacgctgc tgtactgccg ggtgcgcacg tcggtgtagc gcagcgttgt ttccagccac
     3721 gggaagagtt gcactgaagc tgagtaataa cggtactgat cgttatcgcg atagttcagg
     3781 ctcaactccc cttcccgcgc catgcgtgcg gtgggcgttt gtaataatcc tacgccaccg
     3841 aaatccgact gcgacgggcc aatgggcgca ggatatgttt cgccgtagca agccatgcta
     3901 atgcccagcg ccagtaagct aagcagatgt ctttttttca ttattggggt atccgctacg
     3961 tcagagtctg aagaatgtcg gcgttaaggg catcaggcgt ctcactccag acggagtccg
     4021 cgaggccaac ataaataatg ctgccgggca tcggctctac gtgacgcttg ttccagtaag
     4081 ccaccggcgc tttttgcgtg cgtccgtccg ggtaaaccac ccacgcgtag ctgcgatccg
     4141 caccgctaag caggttctgc ccggagagat agctcgccac gtcgcgacct ggagtgaatg
     4201 gctgcttgcc aggacggctg ataagcccga acaacgtgac cgtggacggc ggtggtccga
     4261 cccacagcgt gtagttgccc tgcaacggtg ggttaccgcg ttcggcaacg cgcacgatat
     4321 cgggatcaag attgattttt tgcctgcccg tcactttcaa cgcctgaatt tgctggcgta
     4381 aggcgttaat ggcggcggca tcgtcggcgc tggagtctgc ggcctgttca gccagccgtg
     4441 tcagcaacgc ctgctgctga cgcaatgctg ccgccgttgc cagctcttcg ctaatcaccg
     4501 caccgggcca ccagttgttt gccagccgcg gttagcctac cagatcgatt aaatgctctg
     4561 cgcctgttag tgttttggcc tcactgctgc cattgctgaa caccttgacg gttcctgccg
     4621 cgaagaccga tgacgctccc acactcaaaa gcaacgcgac aaaagtttgt ttaatcattg
     4681 ttttgccgcc ttgatgagag tggttttcac cgggaaataa tccgcgccga gatactgttc
     4741 cgactggcga atttgccctt cgctgtcgat ccagtagcgg ttatgccagc gcgcctggtc
     4801 ggtggagact tcttcgtcca gcacgcgaac cagggtttca tcgctgccga ctttgacggt
     4861 atcggtgcca tcccatttga agactgagcg tgcggtggcg tagcgtacct gctggtactc
     4921 ggtccagccc atcgtgcgcg tccatgttgc accatcaaca atttgtgcgg gtttaatcag
     4981 cgggtcggcg gcaaggttat tcacttcaat caggttgtcg ccgccaagca aaatcttcac
     5041 cagacgacca tgttgtgtga caagagtggc ttgatcctga gtgacccatt tttgttgtcc
     5101 gtcttcagcg aaggccagca ccacaaacaa ttgcggcccg ccattaagct gcatgtactg
     5161 gctggcgtag ggcatatttt gaatatcatc gtccgtcagc tgtacgcctg gcgtgccgaa
     5221 cagactgtcc cacagtgaat tgcccagctc tttagtcgtg gctgaacagg cctgtaatag
     5281 caggcagata agaatgagtg caggtcgctt cacgactctt ctccagaggg gcagaataac
     5341 cacaccggag tgtggttatg gtaaatccct tcatacttca agccacagat gcaatgactc
     5401 aaattatttt ggggatacat actttattac tgggtactgg tggtcgtggt tgtggtggtc
     5461 ccggtattag aaccatcacc gccaccggtt gccgcgagcg cgacacccac cgccgagctt
     5521 acggtgctga cgctggtcgc ggaggaacta cccgccgaaa ccgacgttgc tgccgaccct
     5581 gccgcttcgc ccacctgtac aggtgcagcc cacgcagaag tcgccgcaag cgcagatatg
     5641 gcaaaaatgc catacagaac ttttttcata acaatttccc ttcattgaat gaatggagat
     5701 ttacccaaaa acatttcggg cgggatcgag tatacacaac taaagcatgc gaattacggc
     5761 gcggggaatt agcgatggcg ttttaggata attggaatga atatcaaata taagcttcaa
     5821 cttatattta aataacaata aaaatcataa acttaaaata aaaacaaaag taattaatct
     5881 gcgtattctc cgaaataaac aacgattaaa aatctatttt aggattaacc tcacggtatg
     5941 atttccgtta aatcacagac aaggggattt atctgataaa acaatgccga cttattgtcg
     6001 gcattgtttt taaggttatt taactcctca tactatgcat taatgtcgat attggcatca
     6061 ggctccggtt gccggatgcg gcgtaaacgc cttatccggc ctacatatcg gcatcaggca
     6121 cgcatgatga ttaaccgcgc cacgctttat agcggttaat cagaccattg gtcgagctat
     6181 cgtggctgct gatttctttg tcatctttca gctctggcag aatacggttc gccagttgtt
     6241 tacccaactc cacgccccac tggtcgaagg taaagatgtt caggatcacg ccctgagtaa
     6301 agattttgtg ctcatacagc gcaatcaacg cccccaggct gaacggagtg atttcgcgca
     6361 gcaggatgga gttggtcggg cggttacctt cgaacacttt gaacggcacc acgtagtcaa
     6421 gcgttgccgg atctttaccc tgatcgcgat attcctgctc aaccacttcg cgggatttac
     6481 caaacgccag cgcttcggtc tgggcgaaga agttagacag cagtttctgg tggtgatcag
     6541 agagcgggtt atgggtgata gccggggcga tgaaatcgca cggtaccatt ttggttccct
     6601 ggtggatcag ctggtagaac gcgtgctgac cgttagtgcc tggttcaccc cagataatcg
     6661 ggccagtctg gtaatccaca acgttaccgt tacggtcaac atacttaccg ttggactcca
     6721 tattgccctg ctggaagtac gccgcgaaac ggtgcatata ctggtcatac ggcagaatcg
     6781 cttcagtttc cgcaccaaag aaattgttgt accagatgcc aatcagcgcc aacaggacag
     6841 gcaggttttt ctcggcaggc gtggtggaga aatgcttgtc catcgcgtgt gcgccagaaa
     6901 gcagttcaac gaagttatca aagccgatgg agagaacaat cgacaggcca atcgctgacc
     6961 acaaagagta acggccgccg acccagtccc agaactcgaa catgttggca gtatcaatac
     7021 caaactcgcc aacggctttg gcattggtgg aaagcgccgc aaagtgtttt gcaacgtgtt
     7081 tttcatcacc tgccgctttc aggaaccagt cacgcgcgct atgggcgttg gtcatagttt
     7141 cctgagtggt gaaggtttta gatgctacca agaacagcgt ggtttccggg tttacttttt
     7201 tcagcacttc agcgatgtga gtcccatcga cgttagaaac aaagtgcatg ttcaggtgat
     7261 ttttgtacgg acgcagtgct tcggtcacca tgtacgggcc gaggtcagaa ccaccgatcc
     7321 cgatgttcac tacgtcagtg attgctttgc cggtataacc cttccactca ccggagataa
     7381 tcgcttccga gaaggttttc atcttctcca gcaccgcgtt gacttccggc attacgtctt
     7441 tgccatcaac cagaatcggg gtattgctac ggttacgcag cgctacgtgc agcacggcgc
     7501 ggttttcagt gcggttgatc ttctcgccag agaacatcga cttaatcgcg cccgccagat
     7561 cgcactcttt cgccagatcc tgtaatttcg ccagcgtctc ttcagtgatg cggtttttgg
     7621 agtaatccac cagcatctga tcgtcgaatg ttgcggagaa cttagaaaaa cgatcgccgt
     7681 ctttagcaaa aagatcggcg atcgtaacgt ctttcatttc atcgaagtgt ttctgtagtg
     7741 cctgccaggc agcggtctgc gttggattga tgtttttcat tagcaatact cttctgattt
     7801 tgagaattgt gactttggaa gattgtagcg ccagtcacag aaaaatgtga tggttttagt
     7861 gccgttagcg taatgttgag tgtaaaccct tagcgcagtg aagcatttat tagctgaact
     7921 actgaccgcc aggagtggat gaaaaatccg catgaccccg tcgttgacaa ccgccccgct
     7981 caccctttat ttataaatgt actacctgcg ctagcgcagg ccagaagagg cgcgttgccc
     8041 aagtaacggt gttggaggag ccagtcctgt gataacacct gagggggtgc atcgccgagg
     8101 tgattgaacg gctggccacg ttcatcatcg gctacagggg ctgaatcccc tgggttgtca
     8161 ccagaagcgt tcgcagtcgg gcgtttcgca agtggtggag cacttctggg tgaaaatagt
     8221 agcgaagtat cgctctgcgc ccacccgtct tccgctcttc ccttgtgcca aggctgaaaa
     8281 tggatcccct gacacgaggt agttatgtct gaaattgttg tctccaaatt tggcggtacc
     8341 agcgtagctg attttgacgc catgaaccgc agcgctgata ttgtgctttc tgatgccaac
     8401 gtgcgtttag tagtcctctc ggcttctgct ggtatcacta atctgctggt cgctttagcg
     8461 gaagggctgg aacctggcga gcgattcgaa aaactcgacg ctattcgcaa catccagttt
     8521 gccattctgg aacgtctgcg ttacccgaac gttatccgtg aagagattga acgtctgctg
     8581 gagaacatta ctgttctggc agaagcggcg gcgctggcaa cgtctccggc gctgacagat
     8641 gagctggtca gccacggcga gctgatgtcg accctgctgt ttgtcgaaat cctgcgcgaa
     8701 cgcgatgttc aggcacagtg gtttgatgta cgtaaagtga tgcgtaccaa cgaccgattt
     8761 ggtcgtgcag agccagatgt agccgcgctg gcggaactgg ccgcgctgca gctgctccca
     8821 cgcctcaatg acggcttagt gatcacccag ggatttatcg gtagcgaaaa taaaggtcgt
     8881 acaacgacgc ttggccgtgg aggcagcgat tatacggcag ccttgctggc ggaggcttta
     8941 cacgcatctc gtgttgatat ctggaccgac gtcccgggca tctacaccac cgatccacgc
     9001 gtagtttccg cagcaaaacg cattgatgaa atcgcgtttg ccgaagcggc agagatggca
     9061 acttttggtg caaaagtact gcatccggca acgttgctac ccgcagtacg cagcgatatc
     9121 ccggtctttg tcggctccag caaagaccca cgcgcaggtg gtacgctggt gtgcaataaa
     9181 actgaaaatc ctccgctgtt ccgcgcgctg gcgcttcgtc gcaatcagac tctgctcact
     9241 ttgcacagcc tgaatatgct gcattctcgc ggcttcctcg cggaagtttt cggcatcctc
     9301 gcgcggcata atatttcggt agacttaatc accacgtcag aagtgagcgt ggcattaacc
     9361 cttgatacca ccggttcaac ctccactggc gatacgttgc tgacgcaatc tctgctgatg
     9421 gagctttccg cactgtgccg ggtggaagta gaagaaggtc tggcgctggt cgcgttgatt
     9481 ggcaatgacc tgtcaaaagc ctgcggcgtt ggcaaagagg tattcggcgt actggaaccg
     9541 ttcaacattc gcatgatttg ttacggcgca tccagccata acctgtgctt cctggtgccc
     9601 ggcgaagatg ccgagcaggt ggtgcaaaaa ctgcatagta atttgtttga gtaaatactg
     9661 tatggcctgg aagctatatt tcgggccgta ttgattttct tgtcactatg cttatcaata
     9721 aacgagcctg tactctgtta accaacgtct ttatcgagaa taattgcctt taattttttt
     9781 atctgcatct ctaattaatt atcgaaagag ataaatagtt aagagaaggc aaaatgaata
     9841 ttatcagttc tgctcgcaaa cgaattcccg tacactgaac tctctggctc actgagggca
     9901 ccatcatggc actcccccgt attacccaaa aagagatgac tgaacgcgag cagcgtgaac
     9961 ttaaaacact gctggatcgg gcgcggattg cgcatggtcg cgtactgacc aactccgaaa
    10021 ccaacagcat taagaaagag tacatcgata aattaatggt cgagcgtgag gctgaagcga
    10081 aaaaagcccg ccaattgaag aaaaagcagg cttataaacc ggatcctgaa gcgtcattta
    10141 gctggtcagc aaatacgtcg acgcgcggca ggcgctaatg aacaatcaac gcctgagatt
    10201 ttcactcgtc tgtgtggaca caatcttccc ctcaccctaa ccctctcccc gaaggggcga
    10261 ggggactgtc cgagctcttt ttggacgttt tcatcagtct gaggcgttaa tcagcgtccc
    10321 ttctttttac gccccggcga ggtaaaacgc ttaccgttgg acgccgggcg accgcctttt
    10381 tccgccgttt tttccatctt aacgactgga cgtttgatgc ccgctgtttt cggtttggcc
    10441 ttcgctttag gttttgcctc ggaagaggaa ttttcgatga gcttaaagag gtcgattaac
    10501 tcatcgtcgg ttaaatcgcg ccactccccc agcggaatgc cgcttaagct gacgttcata
    10561 atgcgcgtac gttccagctt tttcacttca tagccgaaat gctcgcacat gcgccggatc
    10621 tgacggttca gcccctgcac cagggtaatg cggaagacaa acggcgcttc ttttttgact
    10681 ttgcactttt tcgtcaccgt cccgaggatc ggcacccccg cccccatacc acgaataaat
    10741 tcatcggtaa tcggtttatc gaccgtcacc agatactctt tctcatgatc gttacccgca
    10801 cggaggatct tattcaccag atcgccgtga ttggtgagga aaatcagccc ctgggagtct
    10861 ttatccaggc ggccaatcgg gaacacgcgt ttgctgtggt taacgaaatc gacaatgtta
    10921 tcgcgctcgc catcttcggt ggtgctgaca ataccgacgg gcttgttcag ggcgataagt
    10981 accaaatctt cggcttcccg aggctcaatc aactgaccgt ttactttcac aatgtcgccg
    11041 ggtttcacct gatcgccaat ggtggctcgc ttgccattaa ggaacacatt gccttgctcg
    11101 atatagcgat ccgcttcgcg gcgtgagcaa attccgcttt cgctgatgta tttatttaaa
    11161 cggactgatg agtcgggcag cataaattct cctgtaaaac gcggaatata ccgtacctct
    11221 tagcggggaa aaacagggtt atgcggcaac gtcgaaatta aatgtgatct gccacgcctt
    11281 ttatcacaaa agtgtctccg gaagtacgat gcaaatttgc ctggcaaaat aaggataatc
    11341 aacatattac gaatcgctgc acacctgtgc tgatgactac tacgcagaga aacaaatgtg
    11401 caagagaaag cgctatatct ccccatgcaa agagtgaaaa atcgctttga aaggccctca
    11461 tgatggggtt atatcagatc aagcggtgag aaagcgtatt tgcacaaatg tgcagaacca
    11521 ggaggcggca atggaaaaca gtgacgatat ccgtttgatt gtgaagattg cccaactcta
    11581 ttacgaacag gatatgacgc aggcgcaaat cgcgcgcgaa ctgggtattt accgcaccac
    11641 catcagccgc ttgcttaaac gaggccgcga tcagggaatt gtcaccatcg ccatcaacta
    11701 tgactacaac gaaaatctct ggctggagca gcaactgaag caaaagtttg gcctgaaaga
    11761 cgttgtggtg gtgtcgggaa atgatgagga tgaagagact caactggcga tgatggggtt
    11821 acacggcgcg caactgctgg atcgcttgct ggagcctggc gatattgtcg gtttttcctg
    11881 gggtcgcgcg gtgagcgcac tggttgaaaa cttgccgcag gcggggcaat cgcggcagtt
    11941 aatctgcgta ccaattattg gcggaccgtc cggtaaactc gaaagccgct atcatgtaaa
    12001 cacattaacc tacagcgcgg cagcgaagct gaaaggggaa tcgcatctcg cggattttcc
    12061 ggctctgctg gataacccat taattcgtaa tgggatcatg cagtctcagc actttaaaac
    12121 catctctgcc tactgggata atctggatgt cgccctggtg ggaattggct caccggccat
    12181 tcgcgacggc gctaactggc atgcgtttta tggtggtgaa gagagtgacg acctgaatgc
    12241 ccgccaggtt gctggcgata tttgctcgcg cttttttgat attcacggcg caatggttga
    12301 aacgaatatg agcgaaaaaa cactctctat cgaaatgaat aaattaaagc aggcacgata
    12361 ttccattggc attgccatga gtgaagaaaa atacagcgga attgttggtg cactgcgtgg
    12421 aaaatatatt aattgtctgg taacgaatag cagcacagct gaactattac tgaaataaaa
    12481 atcttcccga tgtttagcgt aataaaaatt acggcggggc cctattatct aaaatcagga
    12541 gtctgttatg caaacgtggt taaatttgca ggataaaatc attattgtca ccggcggcgc
    12601 atccggtatt ggtctggcga ttgtagagga attattagca caaggcgcaa acgtacagat
    12661 ggtagatatt cacggtggcg atggtcaata tgaaggtcat aaaggctatc agttttggcc
    12721 gaccgatatt tccagcgcca aagaggtaaa tcatacggta gcggaaatta tccagcgttt
    12781 tggtcgcatc gacggtctgg tcaataacgc cggggtcaat ttcccgcgtc tgctggtcga
    12841 tgagaaagcg cctgccgggc agtatgaact caacgaagct gcattcgaaa aaatggtcaa
    12901 tatcaaccag aaaggcgttt ttctgatgtc gcaggcggtg gcgcgacaga tggtcaaaca
    12961 acatgatggc gtgattgtga atgtttcctc agaaagtgga ctggaaggct cagaaggcca
    13021 aagctgttac gccgctacca aagccgcgct taatagcttc acgcgatcct ggtcgaaaga
    13081 attgggtaaa cacggtatcc gtgtggtcgg tatcgcgccg gggattctgg aaaaaacagg
    13141 actgcgcacg ccggaatatg aagaagcgct ggtgtggacg cgcaatatca ccgtcgagca
    13201 gctgcgtgaa ggctatacca aaaacgccat tcctattggg cgcgccggaa gattagcaga
    13261 agtcgctgat tttgtttgtt atctgctgtc tgaacgcgcc agctatatca ccggagtaac
    13321 cactaacatt gcgggcggca aaacgcgcgg ctaaggaggc tttatggtca atgccatttt
    13381 ttgcgcccac ggcaaattag cttgcgccat gctggaatcg gttcagatgg tgtacggcga
    13441 cgccagggtc gaggcagttg aatttgtgcc cggcgagaac gccggagaca tcgtagcaaa
    13501 gctggaaaag ttagtaagca ttcacaatca agatgagtgg ctgattgccg tggatttaca
    13561 gtgcggcagc ccgtggaatg cggcagcgat gcttgcgatg cgcaatcctc gtctgcgggt
    13621 aatcagcggc ctttctctgc cgctggcgct cgaactggtt gataaccagg acagcatgaa
    13681 tgttgatgaa ctgtgtgaac acctgacgca aatcgcaaag caaacctgcg ttgtctggaa
    13741 acaactggca acggcagagg aggatttctg atgaacatta cgctcgcccg cattgatgac
    13801 cgcctgatcc acggtcaggt cactaccgtc tggtcgaaag tggctaacgc ccagcgcatt
    13861 attatctgca atgacgaagt ttataacgat gaagttcgcc ggacattatt gcgtcaggct
    13921 gcgccaccgg gaatgaaggt taacgtggtc aatattgaaa aagccgtcgc tgtttatcac
    13981 aacccgcaat atcaggacga aaccgttttt tatcttttca ctcgcccaca ggatgcctta
    14041 gcgatggttc gccaaggggt aaaaatagac accctaaata ttggcggcat ggcctggcgg
    14101 cccggtaaaa aacagttaac caaagcggtt tcattagatg atgatgatat taacgcattt
    14161 catgagttaa ataatcttgg cgtcatactg gatttacgcg tcgtagcgtc agatccctca
    14221 atcaatatta tcgacaaaat aaacgaacag ttaatcgcaa attaaataat agcgcttgtg
    14281 tacatatgct ttaacaggca gggatgacga cacttaaaag gtgaaaaatc atggaaataa
    14341 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
    14401 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
    14461 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
    14521 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
    14581 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
    14641 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
    14701 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
    14761 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
    14821 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
    14881 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
    14941 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
    15001 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
    15061 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
    15121 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
    15181 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
    15241 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
    15301 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
    15361 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
    15421 accattaacg gcatcaaagt cggtctgatg ggaccattgg caggagttgg cgatccactg
    15481 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
    15541 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
    15601 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
    15661 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg gactgtttgt gatgggcgtg
    15721 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
    15781 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
    15841 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
    15901 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
    15961 agattcttcg ccccggcatg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
    16021 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
    16081 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
    16141 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgaccaac
    16201 cccatcatca tcggccacga gttttgcggc gatattctgg ccgtgggtaa aaagtggcag
    16261 cacaaattcc agccgggtca gcgttatgtg attcaggcca acctgcaact ccccgaccgc
    16321 ccggactgcc ccggctactc cttcccgtgg gtgggcggcg aagccacgca tgtagttatt
    16381 cccaacgagg tcatggaaca agattgcctg ctggcatacg acggcgaaac ctattttgaa
    16441 ggctcactgg ttgaaccgct ttcctgcgtg attggcgcgt tcaacgccaa ctatcatctt
    16501 caggaaggta gttataacca cacgatgggg attcgcccgc aagggcgcat gctgatcctc
    16561 ggcggcaccg gaccaatggg actgttggcg attgattatg cgctacatgg acccgttaac
    16621 ccgtcgcagc tcgtcattac cgataccgac aacgataaat tgagttatgc gcgcaagcac
    16681 tatccatcag aaccgcaaac actgattcat tatctcaatg ccgccgatgc agcatttgat
    16741 acgctaatgg cgctgagtgg cggtcacggc ttcgatgata ttttcgtctt tgtgcctaat
    16801 gaaggactgg tgactctcgc ctcttccttg ctggcgacag atggttgcct gaatttcttc
    16861 gccggaccgc aggataaaca tttcagcgcg ccaattaatt tctacgatgt gcattatgca
    16921 tttacccact acgtgggcac gtcaggcggc aataccgacg acatgcgcgc ggcggtcaaa
    16981 ctgattgaag agaaaaaagt gcaggccgca aaagtggtaa cacatattct tgggctgaat
    17041 gccgcgggcg aaaccacgct tgaattgcct gccgtcggcg gcggcaaaaa gctggtgtat
    17101 accgggaaat acctgccgct gacgtcactc acgcagattc aggatcaagc actggcggcg
    17161 attctggcgc gtcatcaggg gatctggtcc ggtgaggcgg agcaatatct gctcactcat
    17221 gcagaggcaa tttcccatga ttaatcgcgc tacttaactc tgcatgtcgc tggctggtcg
    17281 ccgcggcaac ttcgcgacct gatgtgcggc tgattgctga agcggcccaa tgtgcacgag
    17341 aaggataaaa aaacatcagc gccttaaggg gcgctcaaat tggtggcaaa gtacacattg
    17401 tttatgccgg atgcggaata aagccttatt cggcctacat aatctcgaaa attcaatata
    17461 ttgcagttat ctggtaggcc tggtaagcgt agcgcatcag gcaatgctgt gtttgtcatc
    17521 agtctcagct cccggtgcaa tacgtgacat cgtgagccat gtcagtaagt ggttaaattc
    17581 gcagtggtag catgccttcc gtgatttctt actaaccgga gaagtaatgg aactgctttt
    17641 attgagtaac tcgacgctgc cgggtaaagc ctggctggaa catgcactgc cgctaattgc
    17701 tgaacagttg cagggtcgcc gctcagcggt gtttatccct ttcgctggcg taacgcagac
    17761 ctgggatgat tacacagcga aaacggctgc ggttctcgct ccgctgggtg tttctgtcac
    17821 cggtattcat agcgttgtcg atcccgttgc cgcgattgaa aatgctgaga tcgtgattgt
    17881 cggcggcggg aatactttcc agttgctgaa acagtgccgc gagcgcgggc tgctggcacc
    17941 aattactgac gtggttaaac gtggtgcgct gtatattggc tggagcgcag gcgctaacct
    18001 tgcttgccca accattcgta ccaccaacga tatgccgatt gtcgatccgc aaggtttcga
    18061 tgcgctaaat ctgttcccgt tgcaaatcaa cccgcacttc accaacgcgc tgccggaagg
    18121 ccataaaggt gaaacccgtg agcagcgtat tcgcgaactg ctggtcgtcg cgccagaact
    18181 gacgattatt ggtctaccgg aaggtaactg gatcacagtg agtaaaggtc acgctacgct
    18241 gggtggcccg aacaccacct atgtgtttaa ggccggtgaa gaagcggttc cgctggaagc
    18301 tggtcaccgt ttttaagtga attgccggat gcatgatccg gcatcttgtt catagtgcct
    18361 gatgcgacgc ttgacgcgtc ttatcaggcc tacaggattc acaatattaa tactcgtccc
    18421 gtccttcatc ttcatccgac tgttccagca cactgtaagc caccgaacaa aacagcgagt
    18481 tcaggcgctg catatctccc agtaagccta aatgtagcga actggtttca atgctctgca
    18541 cgttttgctg atgcaggcga tcgacgtggg cgtgggaata gcggcgatta agaatgcgaa
    18601 agcgatgctt actacggcgc aaacgacgag cgctggtgac atcgccagag aagaacaccg
    18661 acattgccag ctttaaatta ctgagcaatt gctcatagag cgcatccagt tccttcaacc
    18721 catcaagcga aaatgcccgc cgtgctgcca gtgatttgtc agcaatttcg ctgcccatgc
    18781 gctcgacgat atcggaggcc tgttcaaggt tgagcgacat ttcaataatc tccgcccagc
    18841 ggcgcgactc ttcctccgcc agctcttctt ttggcatccg cgccagatac agcttaatgg
    18901 cggtgtagag aacgttgata tcatctgcca gcttacgcag ctctttctcc tgccgtggct
    18961 caccgtgcat cactttattc aacccttcca tcatctgttc catggcgtcg ccaatgcgca
    19021 gggtttcgcg cgcggcgttc gccagagcaa gcgtgggcgt atccagcgcg ctgacatcca
    19081 gatgtttagg ccgtagctgg gtatccagtt ccggttcatc gcgaataatc gttttgcaaa
    19141 accgtgccat cgggtcaaca aatggcagca tgaccaggca acgtacaagg ttgtagaaga
    19201 cgtggaaata gatcaccagt tccgcttttg gcaatgacag cttccccatt gtctctgcca
    19261 gcaaatggac aaacggcagg ataatcaggc tacccaccag cttaaacagc agactaccca
    19321 gcgcgacacg gcgggctgcg gcattggcgg cactgttgtt gagcatcgcc agcaggccgg
    19381 aaccgaggtt agcaccaatc accagacaga gcgccacggg gaaggagata atgcctgcgg
    19441 cggtcagagc cgcggtcagc agtacagcag caaggctgga gtagctgata atggcgaaca
    19501 tcgcgccaat cagcgcatcc agcagaatat cgccggtcag cgaggcaaag atcacctgaa
    19561 cgccgtttgc ctgggtgatc ggcgttacgg cctgcacaat caactccagc gccagcaaaa
    19621 tcagcccaag accaataccg acgcggccca gttgcccggc gcgtgactgt ttgcgtccga
    19681 ggaaaaaaat cacgccgata aaaataagta acggtgacag ccaggataag tcgaaggtga
    19741 gaatacgcgc cattagcgcc gtcccgacat ctgcccccag cacaatgacc agagccggtg
    19801 cgagggctac cagatcctga gcgacgaacg aggtcaccag catggtggtg gcattactgc
    19861 tctgtaccag tgcggtaacg ccgatccccg cgcaaaaggc gagcggcttt ttttcgacgc
    19921 tccggctaag gacagtacgc aaacgcgcgc cgaagacgcg cattacgccg gttcgaacaa
    19981 tatgagtccc ccagaccagc agggcgacgg cagaaagcag gtgaagcagc gttaacacga
    20041 gttcaggttc tccttatcgt tatatgttcc tgaagcaatt gaatgaccaa aggaccggaa
    20101 acacgctgac tggcatcttt actgtgcctt ttgacattcg tttttccggc taagattatt
    20161 ccagcctgat tccagtataa gtgtttcata ttaataaaga gacagggcac tcattgagcg
    20221 ccctgtttgt tgtaaggaaa agtgacagat ttgtgaatca gtccgcgtca taccccagat
    20281 tcggtgccag ccagcgctca acatctgaga cgctcatacc tttacggcgg gcatagtctt
    20341 caacctgatc gcgctgaatt tgcgccacgg cgtagtactt gctgtccggg tggctgaaat
    20401 accaacccga aaccgatgca ccgggccaca tggcgaaaga ttctgtgagt ttcatgccgg
    20461 tatgtttttc cacttccagc agctcccaga tggtggcttt ttccgtatgt tccgggcagg
    20521 ccgggtagcc cggtgccgga cggatgccct ggtagttttc gcggatcagt tcttcgttgc
    20581 tgaggttctc gttcggcgca tagccccagt agactttacg cacacgctca tggagatact
    20641 ccgcaaaggc ttcggctaaa cggtcggcaa gcgctttcac catgattttg ttgtaatcat
    20701 cgtgctgcgc ttcaaaggca tcagccagtg cgtcctcttc cagcccgcca gtcacggcaa
    20761 atgcgccgat gtaatctgct ttaccagaaa gcttcggcgc aacaaagtca gcgagacagt
    20821 agttagcgaa tcccgttttt tcggtctgtt gacgcagatg gtggctgaca ttgatcacat
    20881 gggtgcgcgt ttcgtcacgg tagatttcaa tgtcatcgcc cacacggttt gccgggaaca
    20941 ggcccaccac gccacgcgga ttcagcgttt tctcggcgct taatttatcc agcatgtcgt
    21001 tggcgtcttt aaacagccgc tgcgcctcaa cgcccaccac ttcatcttcc agaatgcgcg
    21061 gatacttccc ggccagcgac caggtcataa agaacggtgt ccagtcgatg caattacgca
    21121 gagtttcgat gctggcttca acttcctgca cgccgagacg gtgcgccacc ggcggcgtgt
    21181 aagcctgcca gtcaaaagcg aagtcgttat cgcgcgccgc ttccagcgtg accggtggtg
    21241 tgcgcggttt cttgcgcccg tgctgaatac gtacggtttc gtactccttg cgggtacgag
    21301 cgacaaaatc atcgcgctga gtatcggaaa gcagcgccgc caccacacca acggtgcgcg
    21361 aggcattctg cacatacacc gtcgggccgc tgtagttctg ctcaattttc accgccgtgt
    21421 gcgcttttga ggtggtcgcg ccaccgatca gtaacggaat ggtgaagccc tgacgctcca
    21481 tctctttcgc cacgttaacc atctcgtcca gcgacggcgt gataagcccc gaaaggccaa
    21541 tcaaatcagc attcacttct ttagcagtac ggagaatttt ttccgcaggc accatcacgc
    21601 cgagatcgac aatttcgtag ttgttacatt gcagcaccac gccaacgata tttttaccga
    21661 tatcgtggac gtcgcccttc acggtggcga tcaccatctt gccgttggtt ttgccctgct
    21721 ctttgctggc ttcaataaac ggttcgagat acgccaccgc ctgtttcatg acgcgcgccg
    21781 atttgaccac ctgtggcagg aacattttgc cttcgccaaa cagatcgccg accacgttca
    21841 tgccgtccat caacgggcct tcaatcactt caatcgggcg cgtagcctgc tggcgggctt
    21901 cttcggtatc ctgctcgata aactcggtaa tgcctttgac cagcgagtat tccagacgtt
    21961 tattcacttc ccacgagcgc cactccgcct gctgggcgtt atcggtgtcg tcggttttgc
    22021 tgccgcgata tttctcggca agctccagta aacgctcagt gccatcgtca cgacgattaa
    22081 gaatcacatc ttccaccgcg tcgcgcagtt cagcgggtag gtcgtcgtaa atcgccagtt
    22141 gccccgcgtt gacgatcccc atatccatgc cattgcgaat agcgtagtag aggaacactg
    22201 cgtgaatggc ttcgcgcacc ggatcgttgc cacggaatga gaaagaaacg ttagatacgc
    22261 cgccggaaat cagcgcgtgc ggcagttcgc gtttgatgtc ttcacacgcg ccgataaagt
    22321 cctgcgcgta gttgttgtgc tcttcaatac cggtggcgac cgcgaagatg ttcgggtcga
    22381 agatgatatc ttctggcggg aagccaacct cttcggtgag gattttgtac gcccgacggc
    22441 aaatctcgat tttccgtgcg cgagtatcgg cctgtccctg ttcatcaaag gccatcacca
    22501 ccactgccgc accgtagcga cgcaacaatt tcgcgtgatg gataaaggcg tcgacgccct
    22561 ctttcatcga gattgagtta acaatgcctt tgccctgaat acacttcagc cctttttcga
    22621 taacgtccca ttttgaggag tcgatcataa tcggcacgcg agcgatatcc ggttcaccgg
    22681 caatcagatt gagaaaacgc accatcgccg cttcggcatc gagcatccct tcatccatgt
    22741 tgatatcgat aatctgcgcg ccgttttcca cctgctgacg cgccacatcc tgcgcctcgc
    22801 tgtatttctc ttctttgatc aggcgcttga acttagcaga gccggtgacg ttggtgcgtt
    22861 cacccacgtt cacaaacagg ctatcgtcgc caatgttcag cggctccagg ccagacaaac
    22921 ggcaggctac gggaatttcc ggcagtttgc gcggcgctaa tccttctact gcacgactca
    22981 tcgctgcaat atgttgcggc gtggtcccgc agcaaccacc gacgatattg agaaagcccg
    23041 cttgcgccca ttcacgtatc tgttttgcca tcgtgtcggc gtcgagatcg tattcaccaa
    23101 aggcgttagg cagcccggcg ttcgggtggg cggtgacgta gcattccgca atccgtgata
    23161 gttcctgcac gtactggcgc agttcatcgg gccccagcgc acagttcagg ccaaaggtta
    23221 gcgcttcggc gtggcgcaat gagttgtaaa atgcttcggt ggtctgcccg gagagcgtgc
    23281 gcccggaggc gtcggtgatg gtgccggaga tcataatcgg cagctcaacg cccagcgctt
    23341 caaactccgt tttcaccgca aaaaccgccg ctttggcgtt aagggtgtcg aaaacggttt
    23401 caatcaggat cagatccgca ccaccttcca ccagcgcttt ggtggattcg caataggccg
    23461 ccaccagctg gtcaaaagtg atgttgcgga atgccggatc gttgacgtcc ggagaaatag
    23521 acgccgtgcg gttggttggg ccgagaacac cggcaacgta gcgcggtttc tccggcgtgc
    23581 gcgcggtcca ctcgtcagca caggcgcgcg ccagtttcgc cgccgcaaag ttgatttccg
    23641 ccgacaggga ttccatctgg taatccgcca tcgcaatggt cgtggagttg aaggtgttgg
    23701 tttcgatgat atccgcgccc gcttcaaagt aggcgttgtg gatagcggcg atcacttccg
    23761 gtttgctgag caccagcagg tcgttgttgc ctttgagatc gcatggccag tcggcaaagc
    23821 gttcaccacg aaaatcggct tcgttcagtc gataactctg gatcatggtg cccataccgc
    23881 cgtccagcac cagaatacgt tcatttaact gcgcacgcag ttgttccact ttgctgctca
    23941 cacttgctcc cgacacgctc aacccagatt taataaaaat tcaacaaacc atactggcat
    24001 aaacgcatct gtggtaaaag cgaccaccac gcaacatgag atttgttcaa cattaactca
    24061 tcggatcagt tcagcaacta ttgcattagc taacaataaa aatgaaaatg attcccacga
    24121 tgcagaaaaa ggagactgtc atggtcgcac ccattcccgc gaaacgcggc agaaaacccg
    24181 ccgttgccac cgcaccagcg actggacagg ttcagtcttt aacgcgtggc ctgaaattac
    24241 tggagtggat tgccgaatcc aatggcagtg tggcactcac ggaactggcg caacaagccg
    24301 ggttacccaa ttccacgacc caccgcctgc taaccacaat gcaacagcag ggtttcgtgc
    24361 gtcaggttgg cgaactggga cactgggcaa tcggcgcaca tgcctttatg gtcggcagca
    24421 gctttctcca gagtcgtaat ttgttagcaa ttgttcaccc tatcctgcgc aatctaatgg
    24481 aagagtctgg cgaaacggtc aatatggagg tgcttgatca aagcgatcac gaagcgatta
    24541 ttatcgacca ggtacagtgt acgcatctga tgcgaatgtc cgcgcctatc ggcggtaaat
    24601 tgccgatgca cgcttccggt gcaggtaaag cctttttagc ccaactgagc gaagaacagg
    24661 tgacgaagct gctgcaccgc aaagggttac atgcctatac ccacgcaacg ctggtgtctc
    24721 ctgtgcattt aaaagaagat ctcgcccaaa cgcgcaaacg gggttattca tttgacgatg
    24781 aggaacatgc gctggggcta cgttgccttg cagcgtgtat tttcgatgag caccgtgaac
    24841 cgtttgccgc aatttctatt tccggaccga tttcacgtat taccgatgac cgcgtgaccg
    24901 agtttggcgc aatggtgatt aaagcggcga aggaagtgac actggcgtac ggtggaatgc
    24961 gctgactttt tctggcgggc agaggcaata ttctgcccat cat
//
LOCUS       DAJVUY010000050        24914 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.050, whole genome shotgun sequence.
ACCESSION   DAJVUY010000050 DAJVUY010000000
VERSION     DAJVUY010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.050"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(38..376)
                     /locus_tag="OQQ72_001810"
                     /pseudo
     CDS             complement(38..376)
                     /locus_tag="OQQ72_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(492..1043)
                     /gene="maa"
                     /locus_tag="OQQ72_001811"
     CDS             complement(492..1043)
                     /gene="maa"
                     /locus_tag="OQQ72_001811"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HCS2011569.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1215..1433)
                     /gene="hha"
                     /locus_tag="OQQ72_001812"
     CDS             complement(1215..1433)
                     /gene="hha"
                     /locus_tag="OQQ72_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS2011570.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1459..1833)
                     /gene="tomB"
                     /locus_tag="OQQ72_001813"
     CDS             complement(1459..1833)
                     /gene="tomB"
                     /locus_tag="OQQ72_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HCS2011571.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNYGWVNDPTSAI
                     NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK
                     SGNRLFRCFVNATKENPASLSC"
     gene            complement(2379..5528)
                     /locus_tag="OQQ72_001814"
     CDS             complement(2379..5528)
                     /locus_tag="OQQ72_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS2011572.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5551..6744)
                     /gene="acrA"
                     /locus_tag="OQQ72_001815"
     CDS             complement(5551..6744)
                     /gene="acrA"
                     /locus_tag="OQQ72_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HCS2011573.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDNKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            6886..7533
                     /gene="acrR"
                     /locus_tag="OQQ72_001816"
     CDS             6886..7533
                     /gene="acrR"
                     /locus_tag="OQQ72_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HCS2011574.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7661..11023
                     /gene="mscK"
                     /locus_tag="OQQ72_001817"
     CDS             7661..11023
                     /gene="mscK"
                     /locus_tag="OQQ72_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HCS2011575.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLELQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIVGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11235..11396)
                     /gene="rsmS"
                     /locus_tag="OQQ72_001818"
     CDS             complement(11235..11396)
                     /gene="rsmS"
                     /locus_tag="OQQ72_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HCS2011576.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11410..11937)
                     /gene="priC"
                     /locus_tag="OQQ72_001819"
     CDS             complement(11410..11937)
                     /gene="priC"
                     /locus_tag="OQQ72_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HCS2011577.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRTT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            12007..12384
                     /locus_tag="OQQ72_001820"
     CDS             12007..12384
                     /locus_tag="OQQ72_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
                     /protein_id="HCS2011578.1"
                     /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP
                     RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL
                     VILACLLFYMWRIPVIDEKQEKH"
     gene            12537..13088
                     /gene="apt"
                     /locus_tag="OQQ72_001821"
     CDS             12537..13088
                     /gene="apt"
                     /locus_tag="OQQ72_001821"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCS2011579.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13217..15088
                     /gene="dnaX"
                     /locus_tag="OQQ72_001822"
     CDS             13217..15088
                     /gene="dnaX"
                     /locus_tag="OQQ72_001822"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HCS2011580.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVPSALEKAP
                     AKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAARVS
                     QLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSTLKGSTVEL
                     TIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI"
     misc_feature    14481..14545
                     /gene="dnaX"
                     /locus_tag="OQQ72_001822"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00382"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="DnaX frameshifting element; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00382"
     gene            15141..15470
                     /locus_tag="OQQ72_001823"
     CDS             15141..15470
                     /locus_tag="OQQ72_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HCS2011581.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15470..16075
                     /gene="recR"
                     /locus_tag="OQQ72_001824"
     CDS             15470..16075
                     /gene="recR"
                     /locus_tag="OQQ72_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCS2011582.1"
                     /translation="MQTSPLLTQLMEALRCLSGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16185..18059
                     /gene="htpG"
                     /locus_tag="OQQ72_001825"
     CDS             16185..18059
                     /gene="htpG"
                     /locus_tag="OQQ72_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HCS2011583.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18240..18884
                     /gene="adk"
                     /locus_tag="OQQ72_001826"
     CDS             18240..18884
                     /gene="adk"
                     /locus_tag="OQQ72_001826"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCS2011584.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            19016..19978
                     /gene="hemH"
                     /locus_tag="OQQ72_001827"
     CDS             19016..19978
                     /gene="hemH"
                     /locus_tag="OQQ72_001827"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HCS2011585.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEYIEMMANLVAAYR"
     gene            complement(19975..20934)
                     /gene="aes"
                     /locus_tag="OQQ72_001828"
     CDS             complement(19975..20934)
                     /gene="aes"
                     /locus_tag="OQQ72_001828"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HCS2011586.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIVGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21086..22390
                     /gene="gsk"
                     /locus_tag="OQQ72_001829"
     CDS             21086..22390
                     /gene="gsk"
                     /locus_tag="OQQ72_001829"
                     /EC_number="2.7.1.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HCS2011587.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22523..24199)
                     /locus_tag="OQQ72_001830"
     CDS             complement(22523..24199)
                     /locus_tag="OQQ72_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HCS2011588.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24437..>24914)
                     /gene="fsr"
                     /locus_tag="OQQ72_001831"
     CDS             complement(24437..>24914)
                     /gene="fsr"
                     /locus_tag="OQQ72_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS2011589.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6228 a         6492 c         6395 g         5799 t
ORIGIN      
        1 aacaaatggt agtgtccgct attgccagta cacctcacag cgcggcaggt acaaagcgcg
       61 tgttgtacca ttcgccgtta tagcaaacgc ggaaatccag cacgtcgata tcttcatagc
      121 ggtagcgtgg gtagacatcg aaaaagaaga aaccattaag caggataaat aatacaacca
      181 gtagccagac agagcctgac agcgtttcgg actgcaacat caccgccagg gtggcaaaaa
      241 aagcaacgta cataccgata aacagccccg gatgtttacg gataaaactg atactaaagc
      301 ggggtttgtt gtcgcgtttt tcgcgggtat tcagagactc aatcgtttcg gtcagcaggc
      361 gttgtatttc ggtcatcgtt tgccttcgtg gtatctgcaa ctttccaggg aacaccctat
      421 tttaacgtgg gaatagtaga ggggaagtaa cagatctacc acaattttgc ataacagttg
      481 cgaaaaaccg attacaattt tttaattatt ctggctggat taccgcccac gacaacgttg
      541 tccgggacac cttttgtgac aactgcacct gaagctacca cgacgttatc accaatggtc
      601 acaccagggt taatgaccgc gcgtccgcca atccagacgt tattaccgat ggtgacgggt
      661 ttccccagtt cagcaccgct attacgtgct acagggtcga tgggatgtgt tgccgtgtag
      721 atatgaacgc ctggtgccaa catacagtta tcaccgatgc gaatagggca gacatcaagc
      781 atcacgcaat cgaagttggc gaaaaaatta ttgccgagaa aaatgttata gccataatca
      841 cagcgaaacg ttggctcaat ataagcctct gtcacctgac cgaataaatc agcgagaatt
      901 tgctggcgta atgtgtgctc ttccgccagg gaatgattgt atcggtgaat aagctgacga
      961 gcgcgcaggc gatcgcgaga taacgtctca tctgccgagc gatacaactc accagcaatc
     1021 atcttttctt tttctgtgct cattactgac ctccggttgc tgaaaatgcg gcaacacagt
     1081 aagacgaaaa gtcagtgaac agaacgttcc cattacatct gtgtgataaa gatcacatag
     1141 ggtatgtctt catggtgaaa aagtataaaa ttcttaataa acagccggtt atagctccga
     1201 aagcgaatta tttattagcg aataaatttc catactgagg aagggatctt gtcgtatagt
     1261 ttattcatgg tcaattcggc gaggcggtga tctgcggctg agtaaaatac cgccagttca
     1321 ttatctgata attcgtattt atttttctcg ataacacgct ccagcgtgtc aattgtctgg
     1381 caacgacgta aacgcattaa ataatcggtt ttcgttaaag gtttttcgga catacttcta
     1441 cccatggttg taataattct aacaagataa actcgcagga ttctctttcg tcgcattgac
     1501 aaaacaacgg aatagtcgat tacctgactt ccgccatttc tgaagatcct gcatattaat
     1561 accataacta ctgaacaaca taaaggtgtc atccagatat tcgtcgatct gctcaatgag
     1621 cttattgtct tcattatact taattttgta attaagtgcg aaggtcgcaa tatgctcaat
     1681 cagttcattc aactggaggt tgatcgccga ggttgggtcg ttaacccagc cataattgct
     1741 ttcttcaagg tttgcaaggc agtcatgata cagggtttca cagagaaact taagctgtgc
     1801 gatatcatgt cttttgggtg agtattcatc cataacgcgt ccccttctta gcggttgaac
     1861 taacggacac ctttcgggat ggaaaaaact tactgacctg gacttgccct ctcgtttgtt
     1921 agcttaacta taagccactc tttgcaggta ttcattgcat tattacgaaa aattacaatt
     1981 aggaaggaat cgggacagga ctcacttttt catactagca ctaacccgca gcaggtaaaa
     2041 gcagtttgct cgaactgttc ataacatttc aggattatcg ccagatgaaa ttggtgacac
     2101 taataccagg attgctctga atatgacgta ataaccgagg aatgaataaa gaattaccgc
     2161 aaataattaa gaatagcctc taaatgatta tggattatta aatctattag cgctacttaa
     2221 tataaattaa ctaacaatca gtatttttta tgaattttat ccgtggttaa tactggtttt
     2281 cgtatgagat cctgagttgg tggttcaatt actccttaat gttcgtaggt tatgcataaa
     2341 aaaggccgct tgcgcggcct tagtgattac atgttgtatc aatgatgatc gacagtatgg
     2401 ctgtgctcga tatcttcatt cttgcggcta aagcggcggc gaaccaccac aaagaatacc
     2461 ggaacgaaga agattgccag taccgttgcg gtcaccatcc cgcccattac accggtacct
     2521 actgcgttct gcgcgccgga accagcacca gtactgataa ccagcggcat aacgccgagg
     2581 ataaacgcca gcgaggtcat caggatcgga cgtaaacgca tccgcactgc atcaagcgtc
     2641 gcttcaatca gacctttacc ttctttatcc atcaagtctt tggcgaattc gacgataagt
     2701 atcgcgttct tcgccgacaa cccaatggtt gtgagcaggc ctacttggaa gtaaacgtca
     2761 ttggtcaggc cacggaaggt ggcagccagc aacgcaccga taacccccag cggaacgacc
     2821 agcataacgg agaacggaat cgaccagctc tcgtacagcg ccgctagaca caggaatacg
     2881 acaatcaacg aaatcgcgta cagtgaaggt gcctggttgc cggagaggcg ttcctgatag
     2941 gacatccccg tccagtcata gccaacaccg gtaggcagtt tgctcgccag ttgttccatt
     3001 agctccattg cttcaccggt acttttaccc ggtgccgcct ggcctaagat ttccatggat
     3061 ggcaggccat tgtaacgttc cagacgcggc gaaccgtact cccaacgaga agaggagaat
     3121 gccgagaacg gcaccatctg accatcagca gcacgaacat accagtcgcc gatatcatcc
     3181 ggcagcatac ggtatttcgc ttctgacatg acgtaaactt tcttcacacg accgcggtcg
     3241 ataaagtcgt tcacatagct accgccccat gcagcgccca gagtggtgtt aatgtcgttg
     3301 atagaaacac ccagcgcctg cgctttttcc tggtcgatat caatcttaaa ctgcggggta
     3361 tcttccagac cgtttggacg tacgctggtc aacatatcag gatgctttgc tgcttctgca
     3421 agcagctggt tacgcgcctg agtcagtttt tcgtgaccaa ggccagcctg gtcaatcagc
     3481 tcaaagtcaa agccggttgc agtacccagt tccacgattg cgggcaggtt aaaggcgaaa
     3541 accatcgcat ctttgatttg cgagaaagcg cgtgttgcac gcatggtaat cgcttcaact
     3601 ttgttttctt cgcccggacg atcggcccag tccttcaagg aaacgaacgc aataccggta
     3661 ttctgaccac gtcccgcaaa gccgaagccg ttaacggcga acaccgactc aacgttgttc
     3721 ttttctttgg tcagatagta atgcgttacc tcattgagca ctttctgcgt acgttcctgc
     3781 gttgcacctg ctggcagctg aaccatggtc ataaatacgc cctggtcctc atctggcaag
     3841 aaggagcttg gcagacgcac gaacagatag gccatgccga ccacgatgat cagatacagc
     3901 accaggtaac gccccgtact gcgcagaata ccgcctacgc tgtcggtgta gtggtgcgtg
     3961 ctcttctcga acatgcggtt aaaccagccg aagaagcctt ttttaccttc cccgtgatcg
     4021 cctttggcaa tcggtttcag catggtggca caaagagccg gagtcaggat caacgctacc
     4081 agtaccgaca gcgccattgc tgaaacaatg gtaatagaga actgacgata gatagcacca
     4141 gtagaaccgc caaagaaggc catcggtacg aataccgctg acagtaccat cgcgataccg
     4201 accagagcgc cctgaatctg ccccatcgac ttacgggtag cttcttttgg cggcaaacct
     4261 tcttccgcca taacacgctc cacgttttct accacaacga tagcgtcatc caccaacaag
     4321 ccgatggcga gcaccatccc gaacattgtt agcgtgttta tcgagaagcc aaaggcggca
     4381 aggacggcaa aggtcccgag caataccacc ggtacggcaa tggtcggaat caacgtcgcg
     4441 cggaagttct gcaggaacag atacataacc aggaacacga ggatgatcgc ttcgaccagc
     4501 gttttaacca cttcgtgaat agagattttc acgaacggcg tggtgtcgta cgggtaaaca
     4561 attttcagac ccgacgggaa gaacggttcc atcttcgcca gttcagcacg gattgccgca
     4621 gcggtatcca gcgcatttgc accggtcgcc agcttgatcc ccagaccgga agccggttgg
     4681 ccgttaaact ctgcgatgat gtcgtagttc tcaccaccca gctcaatctt cgccacatca
     4741 cgcagcagga cgcgggaacc atcctgattc actttcagca ggattttgcc gaactcttca
     4801 gtagaggtca gacgcgtctg agcaataata gaggcgttaa gctgttggcc tttcaccggc
     4861 ggcgtaccac cgagctgacc cgccgcaacc tgggcgttct gcgctttgat ggcggtaatg
     4921 acatcaaccg gcgttagctg gaatttgttc agctcattcg ggttcatcca gatacgcatc
     4981 gcgtactgtg aaccgaacaa ctgaacatca cccacgcccg acgtacggct gatggcatct
     5041 ttcatattcg ccgctacgta gtcagagata tcctcctgcg tcatggtgcc atcggtgttg
     5101 ataacgccga caaccatcag gaagctgctg gatgatttct caacgctcac cccttgctgc
     5161 tgaacttctt gcggcagcaa cggcatcgcc agctgcagtt tgttctgcac ctgaacctgc
     5221 gcgatatccg catcagtacc agactcaaag gtcagggtga tctgcacggt ccccgtggag
     5281 tcactgttag aggacatgta catcaggtta tcgataccgt tcatattctg ttcgataacc
     5341 tgtgtcaccg tgtcctgcac tgttttcgca tcagcgccgg ggtaggaggc ggagatcgtt
     5401 actgccggcg gtgcaatcgt aggatattgc gccaccggca gtttgaggat cgccagcccc
     5461 cctgccaaca tgatgataat ggcgatcacc cacgcaaaaa tcgggcgatc gataaagaaa
     5521 ttaggcatgt cttaacggct cctgtttaag ttaagacttg gactgttcag gctgagcacc
     5581 gcttgcggct tgctggttat tatcagcggt aacttcttgt gcttttacct ggacaccagg
     5641 acgcactttc tgcagcccac ttattactac gcgatcgcct gctttcagac cttctgtcac
     5701 cagccactta tcgccaatag cctggcttgc aacgatcgga cgggtttcca ctttgtcatc
     5761 cgcgccaact accagtacgg tggcatcacc acgcggcgta cgggttacgc cctgttgcgg
     5821 gactaaaata gcgtttggat taagcccttc ttccagacgt gcgcgcacga acatacccgg
     5881 cagcagagtg tgatccgggt tcgggaagat agcgcgtagg gtgatagacc cagtggtctg
     5941 atcaacggta acgtcagaga attccagcgt accgtcctgc gggaacttaa tgccgtcact
     6001 ggtgatcagc gacactttgg ctttgccgtt ctcttgtttc agcgtgccat tcgccagttc
     6061 ctgtttcagg cgcaggaagt cgttgctgga ctgggtcaca tcaacgtaga tcggatcaag
     6121 ttgctgcacg gttgccagcg cagtcgcctg accgttctgt accaatgcgc cttccgtcac
     6181 gttcgactta ccaatgcgac cgctaatcgg agcggtgact ttggtgtaag ccagattgat
     6241 ccgcgcagtt tcaacggcag ctttcgccgc agttaccgca gcattcgcct gttgcgcatc
     6301 agccagagcc tgatcgtact cttgcttact gatgtactga gtaccgagca gtttctgata
     6361 acgattcacc gtcaattgcg cgatattggc tgcagcctgg gctttcgcca gatcaccttt
     6421 cgcactgtcg tatgtcgcct gataggtcgc aggatcaatc tgatagagag agacaccagc
     6481 ttcgatgtcg ctaccttctt tgaaattacg cttcaggata atcccgctaa cttgaggacg
     6541 aacttctgcg atccggtagg cactggtgcg acccggaagc tcggttgtga tctgcagagg
     6601 ttcagttttg actgttacta cgccaacggc gggcatctgc tggccacctt gttgggcctg
     6661 tttgttgtca catcctgtta gggctaagct gcctgagagc atcagaacga ccgccagagg
     6721 cgtaaaccct ctgtttttgt tcatatgtaa acctcgagtg tccgatttca aattggtcaa
     6781 tggtcaaaag ttaataaacc cattgctgcg tttatattat cgtcgtgcta tggtacatac
     6841 attcacaaat gtatgtaaat ctaacgcctg taaattcacg aacatatggc acgaaaaacc
     6901 aaacaagaag cgcaagaaac gcgccaacac atcctcgatg tggctctacg tcttttctca
     6961 cagcaggggg tatcatccac ctcgctgggt gagattgcaa aagcagctgg cgttacgcgc
     7021 ggtgcaatct actggcattt taaagacaag tcggatttgt tcagtgagat ctgggaactg
     7081 tcagaatcca atattggtga actagagctt gagtatcagg caaaattccc tggcgatcca
     7141 ctctcagtat taagagagat attaattcat gttcttgaat ccacggtgac agaagaacga
     7201 cgtcgattat tgatggagat tatattccac aaatgcgaat ttgtcggaga aatggctgtt
     7261 gtgcaacagg cacaacgtaa tctctgtctg gaaagttatg accgtataga acaaacgtta
     7321 aaacattgta ttgaagcgaa aatgttgcct gcggatttaa tgacgcgtcg ggcagcaatt
     7381 attatgcgcg gctatatttc cggcctgatg gaaaactggc tctttgcccc gcaatctttt
     7441 gatcttaaaa aagaagcccg cgattacgtc gccatcttac tggagatgta tctcctgtgc
     7501 cccacgcttc gtaatcctgc cactaacgaa taaccctgaa tctgactcca ggatttttcc
     7561 tggacatttt cgtcgttgct attctggttc actgcgtcgt gatattcttg cggtttgact
     7621 ttttcaggtc gttcttcagg ttcagaaacc ttcattcatc atgactatgt tccagtatta
     7681 caaacgatca cggcattttg ttttttcagc atttattgct tttgtttttg tcttgttatg
     7741 ccagaacacg gcgtttgcgc gggcgtcatc gaatggtgat ctgccgacaa aagcggacct
     7801 gcaggcgcaa cttgactcac taaataaaca aaaagatctt tctgctcagg acaaactgga
     7861 gctgcaggat ctgacagata cattagccac cctcgataaa atcgatcgca taaaagaaga
     7921 gacagttcag ctacggcaaa aagtcgctga agcgccggaa aaaatgcgcc aggcgaccgc
     7981 ggcgttaaca gcacttagcg atgtcgataa cgacgaagaa acgcgcaaaa ttctgagtac
     8041 gctttcgttg cgccagctgg aaactcgcgt tgcccaggcg ctggacgatt tgcaaaacgc
     8101 acaaaacgat ctggcgtctt ataacagcca gctggtttcg ttacagacgc agcccgaacg
     8161 cgtgcaaaat gcgatgtata acgcttcgca gcagctgcaa caaattcgca gtcgtctgga
     8221 tgggactgat gtcggcgaga ctgccttacg tcccagccag aaagtgttaa tgcaggctca
     8281 gcaggcgttg ctgaatgcgg agattgacca gcagcgtaaa agcctggaag ggaacaccgt
     8341 cttgcaggat accttgcaaa agcaacgtga ttacgtgacg gcgaacagcg cccgtctgga
     8401 gcaccagttg cagctgttgc aagaagcggt aaacagcaag cgcctgactt taactgaaaa
     8461 aacggcgcag gaagccgtct ccccggatga agccgcgcgt attcaggcta atccgctggt
     8521 gaaacaggaa ctggaaatta accagcagtt aagtcagcgt ctgattaccg cgactgaaaa
     8581 cggtaatcag ttgatgcagc aaaacattaa agtcaaaaac tggctggagc gggcgctgca
     8641 atcggaacgc aatattaaag agcagattgc cgtcctgaag ggcagcctgc tgttgtctcg
     8701 tatcctttac cagcaacaac aaacgctgcc ctcggcggat gaactggaaa acatgaccaa
     8761 ccgcatcgcg gatttgcgtc tcgaacagtt tgaagttaac cagcagcgtg atgcactctt
     8821 ccagagcgat gcgttcgtca acaaactgga agaaggtcac accaacgaag tcaacagcga
     8881 agttcacgat gcgttattgc aagtggttga tatgcgtcgc gaattgctgg atcaactcaa
     8941 caaacagttg ggtaaccagc tgatgatggc cattaacctg caaatcaacc agcagcagtt
     9001 aatgagcgta tcgaaaaacc tgaaatccat cctgactcag caaatctttt gggtgaacag
     9061 taaccgtcca atggactggg actggatcaa agcgttcccg caaagcctga aagatgaatt
     9121 taagtcgatg aaaatcacgg tgaactggga aaaagcctgg cctgccgttt ttatcgcttt
     9181 cctcgccggt ttgccgctgc tgttgattgt cgggctgatc cactggcgtc tgggctggct
     9241 gaaagcgtat caacaaaaac tggcttccgc tgtgggttcc ctgcgtaacg atagccagct
     9301 caacacacca aaagcgatcc ttatcgacct gatccgcgcg ctgccggtgt gcctgattat
     9361 tctcgcggtt ggcttgattc tgttgaccat gcagctcaac atcagcgaac tgctatggtc
     9421 gttcagcaaa aaactggcga ttttctggct ggtgtttggc ctgtgctgga aggtactgga
     9481 gaagaacggc gttgccgtgc gtcacttcgg catgccggaa cagcagacca gccactggcg
     9541 tcggcaaatt gtccgcatca gtctcgcatt gctgcctatc catttctggt ctgtggtggc
     9601 agaactttcc ccgctgcatc tgatggatga tgtgctgggg caagcgatga ttttcttcaa
     9661 cctgctgctg attgccttcc tggtatggcc aatgtgccgc gaaagctggc gtgataaaga
     9721 gtcgcacacc atgcgactgg tcaccattac cgtgctgtcg attatcccga ttgcattgat
     9781 ggtgctgact gccacgggtt atttctacac cacgctgcgc ctctccgggc gttggattga
     9841 aaccgtttat ctggtgatca tctggaactt gctctaccag acggtattgc gcggcttaag
     9901 cgtagcggcg cggcgtatcg cctggcgtcg tgcgctggcg cgtcggcaga atctggtgaa
     9961 agagggcgca gaaggtgccg aaccgccgga agaacccacc attgcactgg aacaggttaa
    10021 ccagcagacg ctgcgtatta ccatgttgct gatgtttgcg ctgttcggtg tcatgttctg
    10081 ggcaatttgg tccgatttga tcaccgtgtt cagctatatc gacagcatta cgctctggca
    10141 ttacaacggt actgaagctg gcgctgcggt ggtgaaaaac gtcaccatgg gcagtctgtt
    10201 gtttgcgatt atcgcctcaa tggtggcctg ggcgttgatt cgcaacctgc ctggtttgct
    10261 ggaagtgctg gtgctctcgc gactgaatat gcgccagggc gcgtcgtatg ccattactac
    10321 catccttaac tacatcatta ttgccgttgg tgcgatgacg gtgttcggat cgctgggcgt
    10381 ctcttgggat aaactccagt ggctggcggc agcattatcc gtaggtcttg gttttggttt
    10441 acaagaaatt ttcggtaact tcgtctccgg tttgatcatt ctgttcgaac gtccggtgcg
    10501 tattggcgat acggtaacca ttggtagctt ctcggggacg gtaagtaaga tccgtattcg
    10561 tgcgacaacg attaccgatt tcgatcgcaa agaagtgatc atcccgaaca aagcgtttgt
    10621 taccgagcgt ctgatcaact ggtcgttgac tgacactact acgcgtctgg tgatccgtct
    10681 cggcgtggcc tatggctccg atctggaaaa agtgcgtaaa gtgttactga aggcggcgac
    10741 tgagcaccca agggtgatgc acgaaccaat gccggaagtc ttctttacgg cgtttggtgc
    10801 cagcacgttg gatcatgagc tgcgtctgta tgtgcgtgaa ctgcgtgacc gtagtcgtac
    10861 tgtcgatgag ctgaaccgta ctatcgatca gctgtgccgt gaaaacgaca tcaacattgc
    10921 ctttaaccag cttgaagtgc atctgcacaa cgagaagggc gatgaggtga cggaagtaaa
    10981 acgcgactac aaaggcgatg acccgacgcc agcggtaggg taataaccaa agggggcgac
    11041 atttagttgc cccgagatta ctgacaaagt gcgcgttgtt catgccggat gcggcgtgac
    11101 cgccttatcc ggcctacgaa accgcaagaa ttcaatgtat tgcaggagcg gtgtaggcct
    11161 gataagcgta gcgcatcagg cagttttgcg tttgcccaca atcttagggg acatttagcg
    11221 gccccattta tttctcactt ttccgcctca tcatcgcgcg ttaatttctt ttcataatcg
    11281 cgttttacaa tatccagcgc gcgcagcacg gtgcgggctg ggatctgatt ttcttccagc
    11341 agcacaatca aatcgacagc cagtttgaca tcgtcagggg cattttccag tgacatactc
    11401 tctccattgc tagcgggtta agcgcgctag cctgttttcg attttttcca gcgcatggcg
    11461 gcagcgtgcc aggcgcgctt cataggcttc cacttcacga tgcagcgttt gctgttccac
    11521 gagatcggtc acccgcgcca ggcgggctct gcgttcggca accatctcac gtagccgccg
    11581 ctcaaaatcc tgatgctgaa tacgtttacg ctgccagcgg gcaattttcg gtggcgcact
    11641 gtcccactcg cgcaatgacc aggcggaggc ttcacgcgcg atggcttcca gttgtgccgc
    11701 cagatgttcc gccagccagg ccacttgcgg cagctgttgc tgctcaactg catgacgaag
    11761 cgcagccaga ttatcgccag cctcatcgag acaagcctgc agtgttgtcg tacgggtttg
    11821 aaaaaggtgt ctgtcaaaac gggcacttag cgtggcaaat tgcgctaccg gggcacaacg
    11881 ctgacgcagc gtagcgagct gtccttccag tttttccagc agcagggcgg ttttcacgat
    11941 aagacctcaa tgaaaatgat aattgttatg ctaaagtagc cactctgtaa gctgacaaca
    12001 ctcaatatgc aacgaatcat tttaatcatc attggctggc tggcggtagt gctgggtacg
    12061 ctgggcgtgg tattaccggt attaccgacg acgccgttta tcctgctggc ggcctggtgc
    12121 tttgcccgtt cttccccgcg ctttcacgcc tggttgctgt accgctcatg gtttggcagc
    12181 tatctacgtt tctggcagaa acatcatgcg atgccgcgcg gcgtcaaacc gcgggcgatt
    12241 ttgcttattt tgctcacgtt tgccatttct ctgtggttcg tccagatgcc atgggtgcgc
    12301 atcatgttgc tggtaattct cgcctgtttg cttttctata tgtggcgaat tccggtgatt
    12361 gatgaaaagc aagaaaagca ctgaagcaca acaatcgcag ttgcaattat tgcgtacagc
    12421 cagtacattc tggcgttttc gagcacaggc gcaggcggtc aaaggttaaa caactgttac
    12481 ttttgatacg tttaaaacgc gccgtgagta ccaccgtaac aagcaggcat acacttatga
    12541 ccgcgactgc acagcagctt gagtatctca aaaatagcat caaaagcatt caggactacc
    12601 caaaacccgg cattcttttc cgcgatgtca ccagcttact ggaagacccg aaagcttacg
    12661 ctctcagcat cgacttgctg gttgagcgtt acaaaaatgc gggcattacc aaagttgtcg
    12721 gcaccgaagc gcgtggcttc ttgtttggcg ctccggtagc tctgggtctg ggcgttggct
    12781 ttgtaccggt ccgtaaaccg ggcaaactgc cgcgtgaaac catcagtgaa acttacgacc
    12841 tggaatacgg caccgatcag ctggagatcc acgttgatgc catcaaaccg ggcgacaaag
    12901 ttctggtggt ggacgatctg ctggcaaccg gcggcactat cgaagcgacc gttaaactga
    12961 tccgtcgtct gggtggtgaa gtggctgacg ctgcgttcat tatcaacctg ttcgatctcg
    13021 gcggcgaaca gcgtctcgaa aaacagggca ttaccagcta cagccttgtc ccgttcccgg
    13081 gccattaatt atcgccagtc ttgtgctgcc cacgctacgg acagcacaag atgtgcattc
    13141 agcctcgccg ttctgacggg gctgtgttag cattacccct tcgtgaatcc accttccagc
    13201 gtttcagagc ctgccaatga gttatcaggt cttagcccga aaatggcgcc cacaaacctt
    13261 tgctgacgtc gtcggccagg aacatgtgct gaccgcactg gcgaacggct tgtcgttagg
    13321 gcgtattcat catgcttatc ttttttccgg tacccgtggc gtcggaaaaa cctctatcgc
    13381 ccgactgctg gcgaaggggc taaactgcga aaccggcatt accgcgacgc cgtgcggcgt
    13441 gtgcgataac tgtcgtgaaa tcgagcaggg gcgctttgtc gatctgattg aaatcgacgc
    13501 cgcctcgcgc accaaagttg aagatacccg cgacctgctg gataacgtcc agtacgctcc
    13561 ggcgcgtggt cgtttcaaag tttatctgat cgacgaagtg catatgctgt cgcgccacag
    13621 ctttaacgca ctgttaaaaa cccttgaaga gccgccggag cacgttaagt ttctgctggc
    13681 gacgaccgat ccacagaaat tgccggtgac gattttgtcg cgctgtttgc aatttcatct
    13741 caaggcgctg gatgtcgagc aaattcgcca tcaacttgag cacatcctca acgaagaaca
    13801 tatcgctcac gagccgcggg cgttgcaatt gctggcgcgc gccgctgaag gcagcctgcg
    13861 agatgcctta agtctgaccg accaggcgat tgccagcggt gacggccagg tttcaaccca
    13921 ggcagtcagt gcgatgctgg gtacgcttga tgacgatcag gcgctgtcgc tggttgaagc
    13981 gatggtcgag gccaacggcg agcgcgtaat ggcgctgatt aatgaagccg ctgcccgtgg
    14041 tatcgagtgg gaagcgttgc tggtggaaat gctcggcctg ttgcatcgta ttgcgatggt
    14101 acaactttcg cctgctgcac ttggcaacga catggccgcc attgagctgc ggatgcgtga
    14161 actggcgcgc accataccgc cgacggatat tcagctttac tatcagacgc tgttgattgg
    14221 tcgcaaagaa ttaccgtatg cgccggaccg ccgcatgggc gttgagatga cgctgctgcg
    14281 cgcgctggcg ttccatccac gtatgcctct gcctgagcca gaagtgccgc gccagtcctt
    14341 tgcacccgtc gcgccaacgg cagtaatgac gccaacccag gtgccgccgc aaccgcaatc
    14401 agcgccgcag caggcaccga ctgtaccgct cccggaaacc accagccagg tgctggcggc
    14461 gcgccagcag ttgcagcgcg tgcagggagc aaccaaagca aaaaagagtg aaccggcagc
    14521 cgctacccgc gcgcgtccgg tgccatcggc gctggaaaaa gcgccagcca aaaaagaagc
    14581 gtatcgctgg aaggcgacca ctccggtgat gcagcaaaaa gaagtggtcg ccacgccgaa
    14641 ggcgctgaaa aaagcgctgg aacatgaaaa aacgccggaa ctggcggcga agctagcggc
    14701 agaagccatt gagcgcgacc cgtgggcggc acgggtgagt caactttcgc taccaaaact
    14761 ggtcgaacag gtggccttaa atgcctggaa agaggagagc gacaacgcag tatgtctgca
    14821 tttgcgctcc tctcagcggc atttgaacaa ccgcggtgca cagcaaaaac tggctgaagc
    14881 gttgagcacg ttaaaaggtt caacggttga actgactatc gttgaagatg ataatcccgc
    14941 ggtgcgtacg ccgctggaat ggcgtcaggc gatatacgaa gaaaaacttg cgcaggcgcg
    15001 cgagtccatt attgcggata ataatattca gaccctgcgt cggttcttcg atgcggagct
    15061 ggatgaagaa agtatccgcc ccatttgatc gtaagcacag cttacgttcg tcatccttaa
    15121 cgtgattgag agagaaacct atgtttggta aaggcggtct gggtaacctg atgaagcaag
    15181 cccagcagat gcaagaaaaa atgcagaaaa tgcaggaaga gatcgcgcag ctggaagtca
    15241 ccggcgaatc tggcgcaggt ctggtaaaag tgaccatcaa cggtgcacac aactgccgtc
    15301 gcgtagagat cgacccgagc ctgctggaag acgacaaaga gatgctggaa gacctggtgg
    15361 ctgcagcatt caacgacgca gcacgtcgta ttgaagaaac gcagaaagaa aaaatggcct
    15421 ctgtatcctc cggaatgcag ctgccgcctg gctttaagat gccgttctga tgcaaaccag
    15481 cccgctgtta acacagctta tggaagcact gcgctgtctg tcgggcgttg gcccgaagtc
    15541 ggcgcagcgt atggcgttca cgctgcttca gcgcgatcgt agcggcggga tgcgtctggc
    15601 gcaggcgctc acccgggcga tgtcggaaat cggccactgc gccgattgcc gcactttcac
    15661 cgaacaggaa gtctgtaaca tctgttcgaa tccgcgtcgt caggaaaacg gtcaaatctg
    15721 tgtggtggag agtccggcgg acatctacgc cattgagcag acggggcagt tttctggtcg
    15781 ttattttgtg ttgatggggc atctgtcacc gctggacggc atcggtccgg atgatatcgg
    15841 gcttgatcgt ctggaacagc gtctggcaga ggaaaaaatc actgaagtga tcctcgccac
    15901 caatcccacg gttgaaggtg aagctaccgc taactacatt gccgagcttt gcgcgcaata
    15961 tgacgtggaa gctagccgaa tcgctcatgg cgtaccggtt ggcggcgaac tggaaatggt
    16021 cgatggcacc acgctgtcac actcccttgc cgggcgtcat aagattcgtt tttaagcaaa
    16081 cgagagcagg atcacctgct ctcgcttgaa attattctcc cttgtcccca tctctccctc
    16141 atcctgtttt taaccttaaa atggcattat tgaggtagac ctacatgaaa ggacaagaaa
    16201 ctcgtggttt tcagtcagaa gtgaaacagc ttctgcacct gatgatccat tctctctatt
    16261 ccaataaaga aatcttcctg cgtgagctta tctctaacgc ctccgatgcg gcggacaagc
    16321 tgcgtttccg tgcgctatct aacccggacc tgtacgaagg tgatggcgaa ctgcgcgttc
    16381 gtgtctcttt cgataaagac aagcgcacgc tgaccatctc cgataacggc gtggggatga
    16441 cccgcgacga agtgattgac catctgggga ctatcgctaa atccggtacc aaatcattcc
    16501 tcgaatccct gggttctgac caggcgaaag acagccagct gatcggtcag tttggtgttg
    16561 gtttctactc tgcgtttatc gtggccgaca aagtgactgt gcgtactcgc gcggcaggcg
    16621 aaaaaccaga aaacggcgtc ttctgggaat cggctggcga aggtgaatat accgttgccg
    16681 acatcaccaa agaagatcgt ggtactgaaa tcaccctgca tcttcgtgaa ggcgaagacg
    16741 agttcctcga tgactggcgc gtgcgttcca tcatcagcaa atactccgac catatcgcgc
    16801 tgccggtaga gatcgaaaaa cgcgaagaga aagacggcga aaccgttatc tcctgggaga
    16861 aaatcaacaa agcgcaggcg ctgtggactc gtaacaagtc ggaaatcacc gatgaagagt
    16921 acaaagagtt ctacaaacac atcgcccacg actttaatga tccgctgacc tggagccaca
    16981 accgcgttga aggtaagcag gagtacacca gcctgctgta catcccgtcc caggctccgt
    17041 gggatatgtg gaaccgtgat cataaacacg gcctgaaact gtacgtccag cgtgtgttca
    17101 tcatggacga cgcagaacag ttcatgccga actatctgcg cttcgtgcgt ggtctgattg
    17161 actccagcga tctgccgctg aacgtttccc gtgaaatcct ccaggacagc acggtaacgc
    17221 gtaacctgcg caatgcgctg accaagcgtg tgctgcaaat gctggaaaaa ctggcgaaag
    17281 acgacgcgga aaaataccag accttctggc aacagtttgg cctggtactg aaagaaggtc
    17341 cggcggaaga tttcgctaac caggaagcga tcgccaaact gctgcgtttt gcttctaccc
    17401 ataccgattc ttctgcgcag accgtatctc tggaagacta cgtttcccgc atgaaagaag
    17461 ggcaggagaa aatctactac atcaccgcag acagctatgc ggcagcgaag agcagcccgc
    17521 acctggaact gctgcgtaag aaaggcatcg aagttctgct gctttccgac cgcatcgatg
    17581 agtggatgat gaactatctg actgagttcg acggtaaacc gttccagtcg gtgtctaaag
    17641 ttgacgagtc gctggaaaaa ctggctgacg aagttgatga gagcgcgaaa gaagcggaga
    17701 aagcactgac tccgttcatc gaccgtgtga aagccttgct cggcgagcgc gtgaaagatg
    17761 tccgtctgac tcaccgtctg accgatacgc cagcgatcgt ttcgaccgac gcggacgaaa
    17821 tgagcactca gatggcgaaa ctgttcgctg cggcgggcca gaaagtgcca gaagtgaaat
    17881 acatcttcga actgaacccg gatcacgtac tggtgaaacg tgcggcagat actgaagatg
    17941 aagcgaagtt cagcgagtgg gtagaactgc tgctggatca ggcgctgctg gcagaacgcg
    18001 gcacgctgga agatccgaac ctgtttattc gtcgtatgaa ccagctgctg gtttcctgat
    18061 gtcatgccgg atgacctttg tgtcatccgg catttttctt ttcatcatca gcactttccg
    18121 caaattatct cgccattaac cgtttcagcc tcaggtgcct ttcttgaggc aatcgcctgt
    18181 tggtggtatc gtttatcgct ttttcaaaaa attcgacaca ttttaagggg attttcgcaa
    18241 tgcgtatcat tctgcttggc gctccgggcg cggggaaagg gactcaggct cagttcatca
    18301 tggagaaata tggtattccg caaatctcca ctggcgatat gctgcgtgct gcggtcaaat
    18361 ctggctccga gctgggtaaa caagcaaaag acattatgga tgctggcaaa ctggtcaccg
    18421 acgaactggt gatcgcgctg gttaaagagc gcattgctca ggaagactgc cgtaatggtt
    18481 tcctgttgga cggcttcccg cgtaccattc cgcaggcaga cgcgatgaaa gaagcgggca
    18541 tcaatgttga ttacgttctg gaattcgacg taccggacga actgattgtt gatcgtatcg
    18601 taggccgccg cgttcatgcg ccgtctggtc gtgtttatca cgttaaattc aatccgccga
    18661 aagtagaagg caaagacgac gttaccggtg aagaactgac tacccgtaaa gacgatcagg
    18721 aagaaaccgt acgtaaacgt ctggttgaat accatcagat gactgcaccg ctgatcggct
    18781 actactccaa agaagcggaa gcgggtaaca ccaaatacgc gaaagttgac ggcaccaagc
    18841 cggttgctga agttcgcgct gatctggaaa aaatcctcgg ctaatcaagc cgcagcagat
    18901 ctgctttcgg gcaggtctgc tcatccacct caggcaatac ctctcacagc aattagttct
    18961 tcttcctcac ttttccgcta caattatcaa caagttgaat cgataagagg cggtaatgcg
    19021 tcagactaaa accggtatcc tgctggcaaa cctgggtacg cccgatgccc ccacacctga
    19081 agcggtaaaa cgctatctga aacaattttt aagcgacaga cgcgtggttg atacctcacg
    19141 gttgttatgg tggccattgc tgcgcggcgt tattttgccg ctgcgctcgc cgcgtgtggc
    19201 gaagctgtat gcctctgtct ggatggaagg tggctcgccg ctgatggttt acagccgcca
    19261 gcaacagcag gcgctggcac aacgtttacc ggagacgcct gtagcgctgg gaatgagcta
    19321 cggctcgcca tcactggaaa gcgccgtcga tgaactcctg gcagagcatg tagatcatat
    19381 tgtggtgctg ccgctttatc cgcaattctc ctgttctacg gtcggtgcgg tatgggatga
    19441 actggcacgc attctggcgc gcaaacgtag cattccgggg atatcgttta ttcgtgatta
    19501 cgccgataac cacgattaca ttaatgcact ggcgaacagc gtacgcgctt cttttgccaa
    19561 acatggcgaa ccggatctgc tgctgctctc ttatcatggc attccccagc gttatgcaga
    19621 tgaaggcgat gattacccgc aacgttgccg cacaacgact cgcgaactgg cttccgcact
    19681 ggggatggca ccggaaaaag tgatgatgac ctttcagtcg cgctttggcc gggaaccctg
    19741 gctgatgcct tataccgacg aaacgctgaa aatgctcgga gaaaaaggcg taggtcatat
    19801 acaggtgatg tgcccgggct ttgctgcgga ttgtctggag acgctggaag agattgccga
    19861 gcaaaaccgt gaggtcttcc tcggtgccgg cgggaaaaaa tatgaatata ttccagcgct
    19921 taatgccacg ccagaatata tcgaaatgat ggctaatctt gttgccgcgt atcgctaaag
    19981 ctgagcggta aagaactgag cgccgtcgcg aagagcctcg tcggcggttt tcatcattcg
    20041 tgaataatgc aaaaaggcat gcagcgtacc tgggtagagt ttgaactcac agggctgctg
    20101 atgcgccgct aacgtctggt aaagcagacg gctgtcatcc agcagcggat cgaactccgc
    20161 cccggcaata aaacagggcg gaacttcgcg agtgagatca ttattaaaca gacagtaata
    20221 cggtgactcg cggtccgcgt cgttgcttaa atacgcctct tcatacatct gcaaatcctg
    20281 ttgcgttaag ccatcccaga caccgcccaa cagacgacga gtcacggaat cccgtaatcc
    20341 gtaaagccca taccacagca aaacacccac aattttaccg caatcgatct gtttatcacg
    20401 caaccacaac gcactggcga gcgccagcat ggcacctgcg gaatcaccgg caaagccaat
    20461 gcgggacata ttgatttgat aatcctccgc ctgctggtgg aaataacaac aagcagccac
    20521 aatttcctct atcgcttgcg gaaaacgcgc ttcaggtgaa agggggtaat caataccaat
    20581 caccgtacat tggctgtagc ttgccagcag gcgcatgatg cgatcgtggg tatcgagatt
    20641 gccgagaata aaaccgcctc catgcaaata aaatagcgtc gccgggctat ctggctgcgg
    20701 acaaaagaga cgtgtttcca cctgcccata ttttgttgga accatgtaag ctctggttgc
    20761 catttctgga gcgcccgcat tccagaatcg gcgctcaagc gtgtaatact gtcgttgctc
    20821 agcaatcgtt cccgttgcgg gccaggacgg taaatccggc tgaagagtat tcacaacggt
    20881 cttcatttca gcagaaataa ggtccagaac aggtagtttg ttttccggct tcatacaaaa
    20941 actcctttca aattacgtca ttgtaaggaa ccactgccat gaaaatgcga tcccgcctgc
    21001 tgatattgaa actggctgcg tctcgcgcgc tcccgtcaga ttgtgttaac attcgccgct
    21061 cagttaacca cccgtaaaaa caaccatgaa atttcccggt aaacgtaaat ccaaacatta
    21121 cttccctgta aatgcacgcg atccgctgct tcagcaattc cagccagaaa acgaaaccag
    21181 cgccgcctgg gtcgtaggta ttgaccagac gctggtcgat attgaagcga aagtggatga
    21241 tgaattcatt gagcgttatg gattaagcgc cgggcattca ctggtgattg aggatgacgt
    21301 agccgaagcg ctttatcagg agctaaaaca gaaaaacctg attacccatc agtttgcggg
    21361 tggcaccatt ggtaacacca tgcacaacta ctcggtgctc gcggacgacc gttcggtgct
    21421 gctgggcgtc atgtgcagca atattgaaat tggcagttat gcctatcgtt acctgtgtaa
    21481 cacttccagc cgtaccgatc ttaactatct acaaggcgtg gatggcccga ttggtcgttg
    21541 ctttacgctg attggcgagt ccggggaacg tacctttgct atcagtccag gccacatgaa
    21601 ccagctgcgg gctgaaagca ttccggaaga tgtgattgcc ggagcctcgg cactggttct
    21661 cacctcttat ctggtgcgtt gcaaaccggg tgaacccatg ccggaagcaa ccatgaaagc
    21721 cattgagtac gcgaagaaat ataacgtacc ggtggtgctg acgctgggca ccaagtttgt
    21781 cattgccgag aatccgcagt ggtggcagca attcctcaaa gatcacgtct ctatccttgc
    21841 gatgaacgaa gatgaagccg aagcgttgac cggagaaagc gatccgttgt tggcatctga
    21901 caaggcgcta gactgggtag atctggtgct gtgcaccgcc gggccaatcg gcttgtatat
    21961 ggcgggcttt accgaagacg aagcgaaacg taaaacccag catccgctgc tgccgggcgc
    22021 tatagcggaa ttcaaccagt atgagtttag ccgcgccatg cgccacaagg attgccagaa
    22081 tccgctgcgt gtatattcgc acattgcgcc gtacatgggc gggccggaaa aaatcatgaa
    22141 cactaatgga gcgggggatg gcgcattggc agcgttgctg catgacatta ccgccaacag
    22201 ctaccatcgt agcaacgtac caaactccag caaacataaa ttcacctggt taacttattc
    22261 atcgttagcg caggtgtgta aatatgctaa ccgtgtgagc tatcaggtac tgaaccagca
    22321 ttcacctcgt ttaacgcgcg gcttgccgga gcgtgaagac agcctggaag agtcttactg
    22381 ggatcgttaa gttatcgtcg gttcgtaggc cagataaggc gttcacgccg catctggcat
    22441 ttggctctcg atgcctgatg cgacgctggc gcgtcttatc atgcctacat atttttcata
    22501 ttttacatcc ggcaaccacc gtttaccccg tcaccacctc acccgccggt ggcgtttcca
    22561 gcagttccag catggtacgg gcgatttcac gctcgcccat cactacctga ttcgcaccac
    22621 gttcggtgat atacgccact tcatcgtcat aatgggcgcg ggcaataatc tcaatatccg
    22681 gatttttcgc gcgggcagat gccacaatct cacccgcttc ataaccgttg ggaatcgtca
    22741 ggatcagcca ttttgcacat tccagatgcg ccagttgcat aatttcttcg ttcgccgcat
    22801 tgcccaatac tgcgcggacc ccgcgctctc gcagctcatc aacacgggtt cgtgacgtct
    22861 caatcaccac cagcggaata tcagaggcga gcaatttctc ccccagcagg ctgcctacac
    22921 gaccgtaacc caccagtagc gcatggttgc aaatatccac tgggatctgc ttctcttctt
    22981 cgattgcctc ttccagcgtc tgctcttcca gcgtttcggt cttcgccaga tatttctcca
    23041 gtagtgcgaa cagtaccggg ttgagcataa tcgacaggat cgcccctgcc agtaccaggt
    23101 tttgtccggc ctgcggcagt aaattcaatg ccattcccag tcccgccagg ataaacgcga
    23161 actcaccaat ctgcgccagg ctggcggcga tggttaatgc cgtacgttgg gagtgaccaa
    23221 acagtcgcac caggaaaaat gcggctaacg acttaccaaa cagaataatc gccagcgtcg
    23281 ccagcactgc cagcggttgc tgaatcagaa ttaacggatc aaacaacatc ccgacggaga
    23341 caaaaaacag caccgcaaac gcgtcgcgca atggcagcgt atcgtgggcg gcacggtgac
    23401 tcagttcaga ctcgttcagt accatcccgg caaagaacgc accgagtgca aaggagacat
    23461 caaacagctc taccgcacca aaggcaatcc ctaacgccag cgccagcacc gacagggtaa
    23521 acagctcgcg agaaccggtt gccgcgctgc gtgccataat ccacggcacc agacggcgac
    23581 ctaccagcat cataatggcg ataaatgcga tcactttgcc gatggtgatc cccatatcga
    23641 ctgcaagagt ggcaaagccc acatcgccct gttccatcat tcctgccact gcgggcagca
    23701 acaccagcgt cagaaccatt accaggtctt ccacaatcaa ccaaccgatg gcgatttgcc
    23761 cacgctgact gtcaattaat tgccgttctt caagtgcgcg cagtaacacc acggtactgg
    23821 cggtggaaag acataaaccg aacacgatac cggtcattaa cgaccagccc agcacggcag
    23881 agagcgccat acccagcagc gtcgccacgg ctatctgggc gatcgcaccg ggaatggcga
    23941 tggcctttac cgccatcaaa tccttcagcg aaaagtgcaa accgacgcca aacatcaaca
    24001 gaatgacgcc cagttcagcc agttccggcg caagcttggt atcggcaaca aagcccggag
    24061 tgaatggtcc tgccagcaca cccgctaaca gatatcccac cagaggagaa atacgtagtt
    24121 tattggccag catgccgagg ataaaggcga gcacaaggcc gccaacaatg gtggtgataa
    24181 gcggggtggc gtgatgcatt ccgtctcctt ttcctggtgg ttattgtcca tttttggccg
    24241 ggaaaaccaa aattacaggt aatagtttat gacaatttca ttgatgatgt tcatgaataa
    24301 ttattgaatt ttgcagaaaa atggaattag ctgcaaaaaa agcacggatc ggaaaacaga
    24361 aggcggttta acagaggaaa ggcttatggc gactgtaaaa cgatgcagcc aaagtttgcc
    24421 tttggctgca atgaaatcag tctttatgcc ggttatcagg caggaatatg gtcaacatcc
    24481 ccaatagtgg caggaaagca cagattttat agactaactc gatgctggtg tgatcggcga
    24541 taagccccag aactgccgct cccagacctc ccatgccaaa agcaaaaccg aaaaagagtc
    24601 cagaaaccat accgatacgt cccggaagta gctcctgagc gtagaccaga atggcagaga
    24661 atgccgaagc gaggataaat ccaataatca ccgttaaaac ccccgtccag tgcaggctgg
    24721 cgtagggtaa aatcagcgta aacggcgcaa cgccgaggat agagccccaa atcacatatt
    24781 tccgtccaat tttatcccct acaggcccgc cgatcaccgt acctgccgca acggcaaaca
    24841 ggaaggcaaa cagatgaagc tgggcattct ggatagataa tccgaatttt tgcatcagat
    24901 aaaaggtgta atag
//
LOCUS       DAJVUY010000051        24740 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.051, whole genome shotgun sequence.
ACCESSION   DAJVUY010000051 DAJVUY010000000
VERSION     DAJVUY010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24740
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.051"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(48..338)
                     /locus_tag="OQQ72_001832"
     CDS             complement(48..338)
                     /locus_tag="OQQ72_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS2011590.1"
                     /translation="MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYF
                     TDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGKNL"
     gene            complement(597..1478)
                     /gene="yddG"
                     /locus_tag="OQQ72_001833"
     CDS             complement(597..1478)
                     /gene="yddG"
                     /locus_tag="OQQ72_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415990.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HCS2011591.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEAGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF
                     LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTQQPEMVFSTPVMIK
                     LISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA
                     LMVCGGSLLCWLATRRG"
     gene            1710..4757
                     /gene="fdnG"
                     /locus_tag="OQQ72_001834"
     CDS             1710..4757
                     /gene="fdnG"
                     /locus_tag="OQQ72_001834"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:2295..2297,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS2011592.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGERVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            4770..5654
                     /gene="fdnH"
                     /locus_tag="OQQ72_001835"
     CDS             4770..5654
                     /gene="fdnH"
                     /locus_tag="OQQ72_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase N subunit beta"
                     /protein_id="HCS2011593.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            5647..6300
                     /gene="fdnI"
                     /locus_tag="OQQ72_001836"
     CDS             5647..6300
                     /gene="fdnI"
                     /locus_tag="OQQ72_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HCS2011594.1"
                     /translation="MSKSKMIVRTKFIDRVCHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(6351..6635)
                     /locus_tag="OQQ72_001837"
     CDS             complement(6351..6635)
                     /locus_tag="OQQ72_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS2011595.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(6781..7791)
                     /gene="adhP"
                     /locus_tag="OQQ72_001838"
                     /pseudo
     CDS             complement(6781..7791)
                     /gene="adhP"
                     /locus_tag="OQQ72_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(7925..9622)
                     /gene="maeA"
                     /locus_tag="OQQ72_001839"
     CDS             complement(7925..9622)
                     /gene="maeA"
                     /locus_tag="OQQ72_001839"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS2011596.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(9779..9916)
                     /gene="sra"
                     /locus_tag="OQQ72_001840"
     CDS             complement(9779..9916)
                     /gene="sra"
                     /locus_tag="OQQ72_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HCS2011597.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(10018..10233)
                     /gene="bdm"
                     /locus_tag="OQQ72_001841"
     CDS             complement(10018..10233)
                     /gene="bdm"
                     /locus_tag="OQQ72_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HCS2011598.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            10579..11010
                     /gene="osmC"
                     /locus_tag="OQQ72_001842"
     CDS             10579..11010
                     /gene="osmC"
                     /locus_tag="OQQ72_001842"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HCS2011599.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(11066..11992)
                     /locus_tag="OQQ72_001843"
     CDS             complement(11066..11992)
                     /locus_tag="OQQ72_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2011600.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKRSSEQQRRALVEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(11985..12971)
                     /locus_tag="OQQ72_001844"
     CDS             complement(11985..12971)
                     /locus_tag="OQQ72_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2011601.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKAGASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(12968..13864)
                     /locus_tag="OQQ72_001845"
     CDS             complement(12968..13864)
                     /locus_tag="OQQ72_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HCS2011602.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLIWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM
                     LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQA
                     SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV
                     GFNLFGDGIRDLLDPKAGGKQS"
     gene            complement(13861..14883)
                     /locus_tag="OQQ72_001846"
     CDS             complement(13861..14883)
                     /locus_tag="OQQ72_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011603.1"
                     /translation="MTFWSILRQRCWGLVLVMAGVCVITFIISHLIPGDPARLLAGDR
                     ASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLE
                     LAFCALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGH
                     LQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGI
                     VARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYG
                     AVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI
                     GRGGGE"
     gene            complement(14885..16435)
                     /locus_tag="OQQ72_001847"
     CDS             complement(14885..16435)
                     /locus_tag="OQQ72_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS2011604.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHDETKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLGINVKLEKL
                     ANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL
                     LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV
                     FNINTMSK"
     gene            complement(16449..17030)
                     /gene="ddpX"
                     /locus_tag="OQQ72_001848"
     CDS             complement(16449..17030)
                     /gene="ddpX"
                     /locus_tag="OQQ72_001848"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HCS2011605.1"
                     /translation="MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            complement(17288..19687)
                     /gene="dosP"
                     /locus_tag="OQQ72_001849"
                     /gene_synonym="pdeO"
     CDS             complement(17288..19687)
                     /gene="dosP"
                     /locus_tag="OQQ72_001849"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HCS2011606.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNQHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNHDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            complement(19712..21093)
                     /gene="dosC"
                     /locus_tag="OQQ72_001850"
                     /pseudo
     CDS             complement(19712..21093)
                     /gene="dosC"
                     /locus_tag="OQQ72_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            complement(21465..22784)
                     /locus_tag="OQQ72_001851"
     CDS             complement(21465..22784)
                     /locus_tag="OQQ72_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 10 protein"
                     /protein_id="HCS2011607.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            complement(22915..24450)
                     /gene="gadC"
                     /locus_tag="OQQ72_001852"
     CDS             complement(22915..24450)
                     /gene="gadC"
                     /locus_tag="OQQ72_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HCS2011608.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
BASE COUNT         6180 a         6230 c         6225 g         6105 t
ORIGIN      
        1 gtgtaatata aggtcagtga tcatattgtg atgggcactt aactcaatca gagattcttg
       61 ccgcgcgagc cgttggcttc atcgttatag cctttaaaat catattccca gtgaccaaaa
      121 ccaatcattt gatcattgat ttgcgtttct cctttaaagc cgagacgggc ataagtttta
      181 tcaccatcgt cacgcttatc atcagtaaaa taacgtagag cggtaacctt gccataaagg
      241 tcgagtttat taccatcctt gttatagact tcggcagcgt gtgctacgtt cgcagctaac
      301 aaaccagtta caaccaccgc aactattttt aatttcattt aacagaatcc ttttaattat
      361 cgtcaaacgt attttctaaa cgaattttaa acggcgtcat ttataaatga catactgttt
      421 ttaaaataga atggtgatta aaaacaatga gaaaaataga tgagataata ttatttatcg
      481 atatgtgatc gaagtcgaaa tgagatataa ggtgaattac tggtatttga aatttatttt
      541 ttaatattgt cggaatttat ctgattaatt gccgggccgt agacccggca attattttaa
      601 ccacgacgtg tcgccagcca gcagagcagg gaaccgccgc agaccattag cgcgccttgc
      661 cagaatgaga acgacagcgg ggcgctgagc agcacggctg caagcgctga ggaaagtacg
      721 ggcgtaaaat acgagcctac cgccattatg gtgacattgc catgcaatat accgacattc
      781 catgcagcat aagcaaatcc taaggtaaat gccgcagaga tgagtttaat catgacgggc
      841 gtgctaaata ccatttctgg ttgttgcgta agaaaatagt aaacccacag acttgctccc
      901 gttagcagga caaaaacggt aattccgtta aatccgcgtg cgtatttatt cgttactgtg
      961 caataggctg cccagataaa cgcaccaata aacgccagga aataactcaa tgggctggtg
     1021 gtgatattat tgatgatttc atcataatgt aacccattct caccgcctaa cacccagcag
     1081 acgccgacca gggctaataa taatcctggt acaatcagcc agttggtttt ctgaccatta
     1141 aacagaatgg caaagagaat tgtcaggctg ggccacagat agttcaccat acccgcttca
     1201 atcgcctgat gacgggtcgc cgcataccct aaggaaagcg ccagacagat ttcatagctg
     1261 acgaataaca gactcccggc gagtaaatag cctttcggaa tctgccgaat acgcggaaat
     1321 ccaaccgtga agattaacag cagcccgctt aatgaataga tagcagctgc gccgccgacc
     1381 gggccgagcc cctcgctgac accgcgaatc aatcctacca tcgtgctcca caggacgatc
     1441 gctattagcc ctatgagcgt tgctttttgt cgtgtcatgc tcgctgtttt gtctctcttg
     1501 ccgttaaaaa ttaagctgaa ttttatagca tttttttaac tggcctgtca ggcagtggtg
     1561 cgtttttcta ccgctattga ggtaggtcaa tttgcgcagg cggattattt tgtggcaaac
     1621 acgtgttctt tttgatttcg cgcaaaaaga ttcagaattt tactgttagt ttcctcgcgc
     1681 agtaatatcc ctgaaaaaag aggaaagcaa tggacgtcag tcgcagacaa ttttttaaaa
     1741 tctgcgcggg cggtatggct ggaacaacgg tagcggcatt gggctttgcc cctaagcaag
     1801 cactggctca ggcgcgaaac tacaaattat tacgcgctaa agagatccgt aacacctgca
     1861 catactgttc cgtaggttgc gggctattga tgtatagcct gggtgatggc gcgaaaaacg
     1921 ccagagaagc gatttatcac attgaaggtg acccggatca tccggtaagc cgtggtgcgc
     1981 tgtgcccaaa aggggccggt ttgctggatt acgtcaacag cgaaaaccgt ctgcgctacc
     2041 cggaatatcg tgcgccaggt tctgacaaat ggcagcgcat tagctgggaa gaagcattct
     2101 cccgtattgc aaagctgatg aaagctgacc gtgacgctaa ctttattgaa aagaacgagc
     2161 agggcgtaac ggtaaaccgt tggctttcta ccggtatgct gtgtgcctcc ggtgccagca
     2221 acgaaaccgg gatgctgaca cagaaatttg cccgctccct cgggatgctg gcggtagaca
     2281 accaggcgcg cgtctgacac ggaccaacgg tagcaagtct tgctccaaca tttggtcgcg
     2341 gtgcgatgac caaccactgg gtggatatca aaaacgctaa cgtcgtaatg gtaatgggcg
     2401 gtaacgctgc tgaagcgcat cccgtcggtt tccgctgggc gatggaagcg aaaaacaaca
     2461 acgatgcaac cttgatcgct gtcgatcctc gttttacgcg taccgcttct gtggcggata
     2521 tttacgcacc tattcgttcc ggtacggaca ttacgttcct gtctggcgtt ttgcgctacc
     2581 tgatcgaaaa caacaaaatc aacgccgaat acgttaaaca ttacaccaac gccagcctgc
     2641 tggtgcgtga tgattttgct ttcgaagacg gcctgttcag cggctacgac gctgaaaaac
     2701 gccagtatga taagtcgtcc tggaactatc agttcgatga aaacggctat gcaaaacgcg
     2761 atgaaacact gactcatccg cgctgtgtgt ggaacctgct gaaagcgcac gtttcccgct
     2821 acacgccgga cgtcgttgaa aacatctgcg gtacgccaaa agccgacttc ctgaaagtgt
     2881 gtgaagtgct ggcctccacc agcgcaccgg atcgcacaac caccttcctg tacgcgctgg
     2941 gctggacgca gcacaccgtg ggtgcgcaga acatccgtac tatggcgatg atccagttgc
     3001 tgctcggtaa catgggtatg gccggtggcg gcgtgaacgc attgcgtggt cactccaaca
     3061 ttcaggggct gactgactta ggtctgctct ctaccagcct gccaggttat ctgacgcttc
     3121 cgtcagaaaa acaggttgat ttgcagtcgt atctggaagc gaacacgccg aaagcgacgc
     3181 tggctggtca ggtgaactac tggagcaact atccgaagtt cttcgttagc ctgatgaaat
     3241 ctttctatgg cgatgccgcg cagaaagaga acaactgggg ctatgactgg ctgccgaagt
     3301 gggaccagac ctacgacgtc atcaagtatt tcaacatgat ggacgaaggc aaagtcaccg
     3361 gttatttctg ccagggcttt aacccggttg cgtccttccc ggacaaaaac aaagtggtga
     3421 gctgcctgag caagctgaag tacatggtgg ttatcgatcc gctggtgact gaaacctcta
     3481 ccttctggca gaaccacggc gagtcgaacg atgtcgatcc ggcgtctatt cagactgaag
     3541 tattccgtct gccttcgacc tgctttgccg aagaagatgg ttctatcgct aactccggtc
     3601 gctggttgca gtggcactgg aaaggtcagg acgcgccggg cgaagcgcgt aacgacggcg
     3661 aaattctggc gggtatctac catcatctgc gcgagctgta ccaggccgaa ggtggtaaag
     3721 gcgtagaacc gctgatgaag atgagctgga actacaagca gccgcacgaa ccgcaatctg
     3781 acgaagtggc taaagagaac aacggctacg cgctggaaga tctctatgac gctaatggcg
     3841 tgcttattgc gaagaaaggt cagttgctga gtagctttgc gcatctgcgt gatgacggta
     3901 caaccgcatc ttcttgctgg atctacaccg gtagctggac agagcagggc aaccagatgg
     3961 ctaaccgcga taactccgac ccgtccggtc tggggaatac gctgggatgg gcctgggcgt
     4021 ggccgctcaa ccgtcgcgtg ctgtacaacc gtgcttcggc ggatatcaac ggtaaaccgt
     4081 gggatccgaa acggatgctg atccagtgga acggcagcaa gtggacgggt aacgatattc
     4141 ctgacttcgg caatgccgca ccgggtacgc caaccgggcc gtttatcatg cagccggaag
     4201 ggatgggacg cctgtttgcc atcaacaaaa tggcggaagg tccgttcccg gaacactacg
     4261 agccgattga aacgccgctg ggcactaacc cgctgcatcc gaacgtggtg tctaacccgg
     4321 ttgttcgtct gtatgaacaa gacgcgctgc ggatgggtaa aaaagagcag ttcccgtatg
     4381 tgggtacgac ctatcgtctg accgagcact tccacacctg gaccaagcac gcattgctca
     4441 acgcaattgc tcagccggaa cagtttgtgg aaatcagcga aacgctggcg gcggcgaaag
     4501 gcattaataa tggcgagcgt gtcactgtct ccagcaagcg tggctttatc cgcgcggtgg
     4561 ctgtggtaac gcgtcgtctg aaaccgctga atgtaaatgg tcagcaggtt gaaacggtgg
     4621 gtattccaat ccactggggc tttgagggtg tcgcgcgtaa aggttatatc gctaacactc
     4681 tgacgccgaa tgtcggtgat gcaaactcgc aaacgccgga atataaagcg ttcttagtca
     4741 acatcgagaa ggcgtaaggg ggcgaacaga tggctatgga aacgcaggac attatcaaaa
     4801 ggtccgcaac taactccatc acgccgcctt ctcaggtgcg tgattacaaa gcagaagtcg
     4861 caaaacttat cgacgtttcc acctgtatcg gctgtaaagc ctgtcaggtg gcgtgttcgg
     4921 agtggaacga catccgtgat gaagtggggc actgcgtcgg ggtttacgat aaccccgccg
     4981 atctgagcgc caagtcctgg acggtgatgc gctttagcga aaccgaacag aacggcaagc
     5041 tggagtggct gatccgtaaa gacggctgta tgcactgtga agatcccggc tgcctgaagg
     5101 cgtgcccgtc tgctggtgca atcattcagt acgctaacgg gattgtcgat ttccagtcgg
     5161 aaaactgcat cggctgtggt tactgcattg ccgggtgtcc gtttaatatt ccgcgcctca
     5221 acaaagagga taaccgggta tataaatgca cgctctgcgt cgatcgcgtc agcgtcggcc
     5281 aggaaccggc ttgtgtgaaa acctgtccga ccggggctat ccacttcggc accaagaagg
     5341 agatgctgga gctggcggaa cagcgcgtgg cgaaactgaa agcgcgtggt tacgaacatg
     5401 ctggcgtcta caacccggaa ggggtcggtg gtacgcacgt tatgtacgtg ctgcatcacg
     5461 ccgatcagcc ggagctgtat cacggtctgc cgaaagatcc gaagatcgac acctcggtaa
     5521 gcctgtggaa aggcgcgttg aaaccgctgg cagcggctgg ctttattgcc acttttgccg
     5581 ggttgatttt ccactacatc ggtattggcc cgaataagga agtggacgat gacgaggagg
     5641 atcatcatga gtaagtcgaa aatgattgtg cgcaccaaat ttattgatcg cgtctgtcac
     5701 tggaccgtgg tgatttgctt cttcctggtg gcgctgtccg ggatttcgtt cttcttcccg
     5761 acgctgcaat ggctgacgca aaccttcggt acgccgcaga tgggacgcat tttgcacccg
     5821 ttcttcggca ttgcgatttt cgtcgcgctg atgtttatgt ttgtgcgttt tgtgcatcac
     5881 aacatcccgg ataagaaaga tattccgtgg ctattgaaca ttgtcgaagt attaaaaggc
     5941 aatgagcaca aagtggcgga tgttggtaag tacaacgccg ggcaaaagat gatgttctgg
     6001 tcgatcatga gcatgatttt cgtgctgttg gtgaccgggg tgattatctg gcgtccgtac
     6061 tttgcgcagt acttcccgat gcaggttgtt cgctacagcc tgctgatcca cgcggctgcc
     6121 ggtatcatcc tgatccacgc catcctgatc catatgtata tggcattctg ggtgaaagga
     6181 tcgattaaag ggatgatcga agggaaggta agccgtcgct gggcgaagaa acaccatccg
     6241 cgctggtatc gtgaaatcga gaaggcagaa gcgaaaaaag agagtgaaga agggatataa
     6301 tctcttttga actttaagct gaaaatggcg ctttaagaag cgccattttt ttattgcgta
     6361 accagacggc gcagtcgcga cacatccacc gttttttcag cctctgccag actccaggcg
     6421 ttttgcagat tcagccacat ttgcggcgaa ctgccgatca ccacggaaag tttaattgcc
     6481 atttctggcg tcaaagctgc ttttccggtc agcaatcggc ttgccgttga gggcgcaatt
     6541 tccattgctc tggcaaactc gcgcaggctg acattaagtt cgtccagtga ttcctgaata
     6601 atgtcccccg ggcggggatg attggccatt ttcattagtg tctttactct cagtagcgtt
     6661 ccttctctgg gaacactatc attattgttc cttcctacgc aacaataatc catttagcca
     6721 tttcatgttg gagagtgtgc gatgctgcga cccgaacatg ggagtcgcag caaagacctc
     6781 ttagtgacgg aaatcaatca ccatacggcc acggattttg ccttcttcca tctcggtaaa
     6841 gatggtgttg atgtccgcta acggacgcag ggcgactttc ggcaccactt tgccttcggc
     6901 ggcaaactgg aaggcttcgg ttagatcctg gcgcgtgccg accagcgaac cgaccacttc
     6961 aatgccatcc agcacaagac gtgggatatc caggctcata gactccggcg gcagaccgac
     7021 agccacaaca cgaccgcctg cacggacagc atcaactgcc gagttaaacg cagctttagc
     7081 tactgctgtt accaccgcag cgtgagcgcc accggttttc tcctgcacaa tttaggcggc
     7141 gtcttcggtg cgtgagttaa tcgctaaatc tgcacccatt tcggttgcca gttttaactg
     7201 ctcatcattg acatcaatgg cgatcacttt ggcgttaaag acattcttcg cgtattgcag
     7261 ggcgaggtta cccagaccgc caagaccgta gatagcaatc cactgaccgg gacgaatttt
     7321 tgacagttta acggctttgt aggtggtgac ccccgcacag gtaatgctgc tggccgccgc
     7381 cgagtccaga ccatctggca cttttaccgc gtaatcggcg accacgatgc actcttccgc
     7441 catcccgcca tcaacgctgt atccggcatt tttaactgaa cggcagagcg tttcgttacc
     7501 actgttacag tattcgcaat gaccgcatcc ttcgtaaaac cacgccacgc tggcacgatc
     7561 gcctggtttt aatgaggtga cacctgggcc aacttctgcc accacaccga tgccttcatg
     7621 gcccagaatt accccagttt tgtcaccaaa atcgccattc ttaacatgaa gatcggtatg
     7681 acatacacca caacactcca ttttcagcag ggcttcgcca tgtttcagtg agcgcagtgt
     7741 tttatccgta acgtcaacat gatgatcctt cgtaacaact gcagccttca tagttcctcc
     7801 ttttcggatg atgttctgca tagcaggtga ggcaaatgag atttattcgc cactacccag
     7861 tatggatgag atctgaaaaa gggagaggga aatagcccgg tagccttcac taccgggcgc
     7921 aggcttagat ggaggtacgg cggtagtcgc ggtattcggc ttgccagaaa ttatcgtcaa
     7981 tggcttgttg caaagcttca gcagacgttt tcaccgccac gccttgctgc tgcgccattt
     8041 tgccaaccgc aaacgcaatt gcgcgggaga ctttctgaat atctttcagt tccggtagta
     8101 ccagaccttc gccgttcagc accagcggcg aatactgagc aagcgtttca cttgctgaca
     8161 tcagcatctc atcggtgata cgtgacgcgc cggaagcaat aacacccagc ccgatgccag
     8221 ggaaaataaa ggcgttgtta cactgggcga tagggtagat tttatctttc cataccactg
     8281 gattaaacgg gctgccagtg gcgaccagcg cgttaccttc ggtccaggcg ataatgtcct
     8341 gcggtgtggc ttccacgcgt gacgtcgggt tagacagcgg catcacgatc ggacgcggac
     8401 agtgtttatg catctcacgg atgatctctt ccgtaaacag cccggtctgt cctgagacgc
     8461 caatcagaat atctggtttt acattgcgca ccacatccag cagtgacagc acatcgctgt
     8521 cggtatccca gtcactgagg ttttcgcgtt tctgcaccag tttggtctgg aaaggcagca
     8581 ggttcggcat cttgtccgtc agcaggccaa agcgatcgac cataaagact ttctgccgcg
     8641 ccgcttcctc gcttaatcct tcgcgctggg tctgggcgat gatcatttcg gcaatgccgc
     8701 atcccgctga acctgcacca aggaagacga tttttttctc gcttaactga ccacctgccg
     8761 ctcggcttgc tgcgatcagt gtgccgactg ttaccgccgc agtgccctga atgtcatcgt
     8821 taaaagaaca aatttcattg cgatagcggt taagtaacgg catcgcattt ttttgagcaa
     8881 agtcttcaaa ctgcaacagc acgtctggcc agcgttgttt cacagcctgg ataaattcat
     8941 caacgaattc atagtattcg tcgtcaatga tacgcggatt acgccagccc atatacagcg
     9001 gatcgttaag cagctgttgg ttgttcgttc cgacatccag caccaccgga agggtatacg
     9061 ccgggctgat gccgccacag gcggtataga gcgacagttt accgatcgga atgcccatcc
     9121 cgccgatgcc ctggtcacca agccccagaa tacgttcacc gtcagtcacc acaatcactt
     9181 tgatattatg gttcggtacg ttttgcagaa tatcgtccat attgtggcgg ttctggtaag
     9241 agataaacac gccgcgtgaa cggcggtaga tctcagaaaa acgctcacag gctgcgccga
     9301 cggttggggt ataaataaca ggcatcatct catcaagatg attgtttacc agacggtaga
     9361 agagggtttc gttggtgtcc tggatgttac gcaggtagat gtgtttgtcg atttcggttt
     9421 tgaatccctg atactggatc catgctcgtt ccgcttgttc ttcgatggtt tcgaccactt
     9481 ccggcagtaa ccccagcagg ttgaagttac ggcgttcttc catgctgaag gcactgcctt
     9541 tattcaacaa cggaaattcc agcagtacag ggccagcgta agggatataa agcgaacgct
     9601 gtttttttgt ttttggttcc atgtcactca ctcttttttg aatatccatc cctggcacgc
     9661 ttttatcgtc tttgctttac cgccagggcg tcggccccaa gtataaagca gataaaaaca
     9721 aaaacaccat tgcgcaggca atggtgttta atcgtcattg aggactgatg gttatgaatt
     9781 acttttcagc ggggcgtttt ctgccggttg ggttatttac cacgctggat ttgtcacctt
     9841 cggtaactat tttgcgctgg ttagaaattt tatggtccag tccaagaata tgacgtgcct
     9901 gacggttcga tttcatttta actcctcaat cctgttgcta gttttaagga caacatcgcc
     9961 gtagcgaaga aacacgtgct aaacccctaa attaggttgc cgatcaagca tagcacctta
    10021 aagcgtaggg tgctggccac tgaccacata attgatcgtt tgctggtaga tatcactgag
    10081 gatgtcgtta tcagaagctt ccacccattt ggtcagctcc atgagaatgt catcttcagt
    10141 gacaacaccg tgctctgccc gaaggccttg ctcaatggca ttaaccagag cgggttctgc
    10201 tgttgaattt tctgcctgat aataagtaaa catagtgatt ctccgtgtct gtgtatttat
    10261 ggtgtctgct acggatcgca gatttataaa gcacattcag catggcaaat atttgccgct
    10321 ttgttgttaa gattagtcct ggttgatgat ttttatattt taacctcatg atattgatag
    10381 gtattattat tgtggtgagt tgattaatat taatgcaata tctcttgggt tatatattcc
    10441 cggttatcta ttgtggaaat ttaatttaag tgcagaagta atatttctgc cggattttta
    10501 ttcggaatat cctgcttatc ctcgtgctgt ttctcacgta gtctataatt tcctttttaa
    10561 gcccacatga gagcaacaat gacaatccat aagaaaggtc aggcacactg ggaaggcgat
    10621 atcaaacgcg ggaagggaac agtatccacc gagagtggcg tgctgaacca acagccgtat
    10681 ggatttaaca cgcgttttga aggcgaaaaa ggaactaacc ctgaagaact gattggcgca
    10741 gcgcatgccg catgtttctc aatggcgctt tcattcatgc tgggggaagc gggatttacg
    10801 ccaacatcga ttgataccat cgccgatgtg tcgctggata aagtggatgc cggttttgcg
    10861 attacgaaaa tcgcactgaa gagtgaagtt gcggtgccgg gtattgatgc ctctaccttt
    10921 gacggcatca tccagaaagc aaaagcagga tgcccggtct ctcaggtact gaaagcggaa
    10981 attacgctgg attaccagtt gaaatcgtaa agcattgccg gatgacgtgt caggcgcgtg
    11041 aatgcctgat gcgttgttag catctctaca gcgcccgcca gcaccggagc tcacgtccgt
    11101 cctcccttat tgctaatgat tgccggactt cacatccgct ggttgcaagg gggcaacgtt
    11161 cgtagaaaaa acagccttgc ggcaacgtgc ggtttcccgg cagatccgtt ttacgtaatg
    11221 cccattcttc ctccagcggt ttatcaatgg cggggaggga atccagcaat aatcgggtgt
    11281 atggatgtgc cggagccgtt agcacctgtt gcgcgtcgcc cagttctaca atctgcccga
    11341 gatacatcac cgccacccga tcgctcatat gacgtatcac cgagacattg tgtgaaatca
    11401 gcacataggt cagcccgtga ttttcctgta gcgttaccag taaattgagg atctgcgcct
    11461 gcacggagat atccagcgca gaggttggct catcaagcac aatcacgtca ggctgcgaag
    11521 agagtgctct ggcaatggcg atacgttgcc gctgcccgcc ggagaacgca tgaggcaggc
    11581 ggtcgagata ctccggacga atacccacct gcacagccag ctcctctacc aacgctcgcc
    11641 gctgttgttc actactacgc ttagctatcc agagcggttc tgtgatgatg cgccacaccg
    11701 gtaagcgcgg attgagcgaa gagagcgggt cctgaaacac catctgcata atgcgttgtg
    11761 agccagaacg gatgtactgc ccgtggctcg gttgcagcat acccattaaa agctgtgcga
    11821 gggtgctttt gccgcagcct gactcgccga cgatccctaa ggtttcacca cggcggatct
    11881 gtaaatcaat accattaatc gcatgaacat gttccgtagt tttaccaagc cagtttttac
    11941 gggccgggaa attgatatgg acgccgcgta acgttaataa cgtgtcagac acttatgacc
    12001 tcctgctgcg gataccaaca ggcgcagcgc tggttgttgt caccacacgc tgtcagcgcc
    12061 gggacgtttt cacactgtgc acctgccgca tagcaacgat cgcgaaaagc gcagccgtca
    12121 ggcaaatggg tgaggtttgg taccgtccct ggaatggcgg gtaatagctg gcgtggtact
    12181 ccatgttctg gtgcacattg gagcaaacca atggtatacg gatgccgggg atgatggata
    12241 acgtctgccc tcacgccgct ttcaattacg cttccggcat acatcacgta aacgctatcg
    12301 cacagttgcg acaccacggc catatcatgg ctgatgaaca gaaccgcagt tccactggcg
    12361 ccggctttat gtttaagcaa acgcagtacc tgcaactgca ccgtaacgtc cagcgccgta
    12421 gtcggttcgt cggcaataat caattgcggc tcgcaggaga atgccagcgc aatcattacc
    12481 cgctggcgca taccacctga aagctcaaac ggatagcgcg acataacttc cacggcatcc
    12541 gggatttgca tctcttccag caggacaatc gctttagctc tggcttcccg acgacttatt
    12601 ggttgatgat ggcggatcac gtccatcatc tgaagaccta ttcgacgtgt cggattgagg
    12661 gcggtcatcg gttcctgaaa gatcatcgcc actcgtgcgc cgcgccactg acgaagctgt
    12721 ttttcccgag cgttaagaac atcgtctccc agcagtgaaa tctgcccccg atgtacgcaa
    12781 taactgcccg tcggtagcag acgcataatc agcattgcgg tgactgattt acctgagccg
    12841 gattctccca ccagaccgac aatttcaccg cggttaatct gcaaggacac attgttgagc
    12901 gcgtgaacat caccgttaaa accggggaaa ctcaaatgca gctgttgaat gtccagaacg
    12961 ggctgggtca tgactgcttt cctcctgctt tcgggtcaag cagatcgcga ataccatcac
    13021 caaagagatt aaacccaacg gcggtaagca aaatcgctgc ccctggaaat gcgcaatacc
    13081 accactgatc gagtacatag ttgcgaccat tcgctaccat cgcgccccat tcagcactcg
    13141 gttgttgagc acccaggcca ataaatccca acgtggcggc cattaaaatc gcgctaccga
    13201 tatccagcga tgcctgcacg atcagcggcg gcagggagtt acgtaaaata tgccagctga
    13261 tcagatgcca acgcgacgca ccaaaggttt tcgccgcctg aacataggta tactggcgta
    13321 caactaatgc ttgcccccgc gccaggcgca cataaaaggg aattcgcaca atagcaatcg
    13381 ccagcatggc gttaaataaa ctcggcccga gagcggcagc cagtgccatt gtcagtacca
    13441 acgaaggaat cgacagcata atgtccatga tgcgcatgat gatggcgtct gcgcgtccgc
    13501 caagcacacc ggatagacat ccgagtagcg aaccaatcat acccgcaatg gcaaccacga
    13561 ctaatccggc gagaattgat tgctgactgc cgaccagtac gcggctgaac agatcgcgtc
    13621 ccacttcatc ggtgccaaac cagtgcgccg cagaaggcgg caaaaggcgg gcggttaaat
    13681 caatggcgtt gggatcatgc gtcgcaagcc acggtgaaaa aaacatcatc aatagcatta
    13741 atacaatgat gactgcgccg gtcacggtga gcggactgcc tttcagcatc catatcagtt
    13801 ttgcaccgtt aaatcgcgtt tgtttttgtg ggcgtacggc ggacgtttcc tcgcttagca
    13861 tcattcacca cctccacgtc cgatacgcgg atcaatccac aaatagagca aatccaccac
    13921 caggttgacc agcacataag caaatgaaac cacgacggca aagcccatca ctgccgggaa
    13981 gtcgagcgcc tgtattgatg ttactaccca tgcacccatt ccgggccagg caaaaacggt
    14041 ttcggtgagc actgcgccat acaacaaatc gcccagcgcc agacccaata cggtaatcga
    14101 tgggatcaac gcattgggta gcgcataaca taaaacgata taccagccgg gcaagccgct
    14161 ggcccgggcg gtacgaatgt agtcttcact caattgttcc agcatcgctg agcggatctg
    14221 gcgagcgaca attcccaggt gaacgaacgc cagcgttaat gccggtaaga tgagatgttg
    14281 caacgcattg aagaagactt caccgttgcc ttcaagcagc gcatcgagca gataaaagcc
    14341 ggtaacgtgc gttggtggat ccagccagtc atcaagcctt ccgccgccgg gaagaatttg
    14401 cagatgacca taaaacagca caatgacgcc cagtccaagc caaaacgcag gtgtggagat
    14461 tccggtaatg gccattattc gcaccagatg atccagccag cgatttcgcc agactgcaga
    14521 gagtatgccc agcgggatgc caatcaggag tgccagcagc agggcacaaa aagccagttc
    14581 cagcgtcgcc gggaaaaata tacgcaactc ttccaacacc ggacgcccgg tacgaatgga
    14641 tgttcccagg tcaccatgaa acaggtcgct gacgtagcgg taaaactgta catacagtgg
    14701 ctggtccagt cccagttgct ggcgaatatt ttccacgata gcatcgctgg cgcggtcacc
    14761 cgccagtaac cgcgccggat cgccagggat cagatgcgag ataataaacg taatcacgca
    14821 gacgcccgcc atcacgagca ccagccccca gcagcgttgg cgtaaaatac tccagaaggt
    14881 cacgttattt actcatggta ttgatattga agacctgttc cagcatggga ttgaacacaa
    14941 agcctttcac ctctttgttc atcgccagtt ggtagttttt ctggaacagg tacacataag
    15001 cagcgtcatc aatgacgatt ttctgtgcct gctggtagtc ccgggtacgc tgcgtctggt
    15061 cggtggtcgc aagcgcattg cgcagtaact tatcgacctc actgttttca tagaacgagc
    15121 ggttacccgg cagacctttt ttgtctgact caaaccagta attcataaac atatacgggt
    15181 cggcaaaatc cggactccag ttgccaatcg caatgtcgta atcaccttta cccactctgt
    15241 cgcgcatggt ggcgttcgcc agcttttcca gcttcacatt gatgcccagc ttgttgagac
    15301 tggattgtgt cgccagagca ataggctccc agttcggatc cttatcggag tagagaaacg
    15361 tcaggctggt gggtttgctc gtcactttat cccattcggc tttggctttc gtttcgtcat
    15421 ggttgtattg cattgccgtc gcatcgtagc cccacatgcc ttccggaatc gggccgcgca
    15481 tctgttttcc gttaccactc agaatgccgt taaccatgcc ctgataatcg gtagaccagg
    15541 aaatggcccg acgcagatcc gcctgattaa gaggcgcttt gctgttattc agatacaggt
    15601 aggtgacgcg cagtgacgga tactctgcca cattgacttt gttttcctgc ttcagggcgt
    15661 tgagttgatc caccggcagc gcatcggcaa tgtcaatatc accacgggag agctgcaggc
    15721 gacgggaggc actttcacca ataattttta ccgatactcg cttaaagttc ggtttattgc
    15781 cagggtaatg cggatttggc accagaacta attgctgacc tttttgccag cttttcagca
    15841 taaatggtcc ggaaccggcg gtattttgcg cgaggaagcc gcgggcatca tccgctgcat
    15901 gttcctttaa caccgccgga ttgataatgg atgcaccgtc attcgccagc gtgtagagga
    15961 acggtgcgaa tggctggcta agggtaaact tcaccgtatg ttcgtcggga gcatcaatct
    16021 ttaaatcttt gggaaatgct tctgctggcc cctggccgat ttttagtagc cgctcaaaag
    16081 agagttttac tgcttcggca gtgaccggtg tgccatcggc aaatttagca ttgtccttca
    16141 gggtgaacgt ccactctttt tgatcgtcag acgctttcca gctacttgcc agatcgcctt
    16201 caacgtcggt tgagccttta tcaccgtccg ttttgtactg aaccagccgc tgataagacg
    16261 ggtaggtcac cgtccagtcg ttattatcta ttgttaccgc cggggcgagg gtttgtggat
    16321 cggcggcctt accaatcacc agcatatctt tcggtacggc ggcgtgcgca accgggaaag
    16381 ttgtggcaag gacgagcgcg agcaatgtag gacgaaacgg tatcgatctc ttcatgacag
    16441 tttcctgatt aactgacgtg ctgtgtgcca ggggatataa aacaggtgaa ttgatcagcg
    16501 agcagtgggt aactcgctgc ctggggtaat tcgaagtgcc accattcgct ggagataccg
    16561 acaaaaccgc caccagtcat aatcgcattc agcaacagcc gattgcgctg agcggcgggc
    16621 gggacggaag ggtgataggc atgggagcgc tcgtgcattt catcgaaccc tgcgcccata
    16681 tcgaggatgt tcccgtgctc atcacgaagc gtcaggtcga tcgccgtgcc acggctgtga
    16741 ttagaaccga ccgtcacatc aacaacatat tgcgggtctg ggcaggcttg ccacaacatc
    16801 gcctgtgctt gttgtgggcg atacgcatcg taaatcacca gttgtaagcc tgacagctgg
    16861 gcgatactga tacttttcgc cagcgcggta atcgcatcct tgtgtagcag acaacgcgct
    16921 tgctgataaa tagctttacc tgtgatgtta tcagcgcagg cgtatttcaa ttcgatctcc
    16981 agatcaggga agattacggc taaatcaacc agttcggtgg tatccgacat aaacggttcc
    17041 tgtataagac aaaaattgct gcgctttccg cttatgcaga tctcatgcca tgccgggata
    17101 agcgccagaa tgctggctta aagttatatt ttttaacttt tgatcaacat ttgtgcagcg
    17161 tagtgcagtt ttggtgcaag aggggaagtt aaggaaggaa tctcccggaa tcgtagatga
    17221 aatcacagta tttaagtgac ggtgtcacgt taaatgaaaa cccgcgagtg cgggcgagag
    17281 gaatttgtca gattttcagc ggtaacacgc tgctcatcca gcctggaatt tcttcggcgg
    17341 gtagggggcg ggaaaagaaa tatccctgaa taacgcgaca gtggatcttg cgtagcatct
    17401 caaattgctc tttggtttcg acgccttccg ccacgacggt taaattgagg ctttgcccaa
    17461 tgctggtaat ggcttcaagt aaggcaagga tgcgtttttc ggtcagacaa cgatcgacaa
    17521 aacttttgtc aattttgatt tccgttaccg gaagactgac taagcgggat aatccggaaa
    17581 agcccgtacc aaaatcatct accgataagc ccacgcccat atcacgcagg atctgaatgc
    17641 gcttaaagat ttcggtatcg tgttccatca tcatgctttc cgtgatttct accgtcagct
    17701 ggtggccgtc aataccccag gcgtgcattg catcagacac ctgattaggc agttgattac
    17761 tgcgaaagtg cagtgccgac aagttaacgg aaagcgccgg gatatgaata ttctggctac
    17821 gccattctgc taactgacgg caagcttccg cgatgaccca gcgcccaata ttttcgattt
    17881 caccaatctc ttctgcgaga ggaataaacc gtgaaggggg cacatgacca tgctggggat
    17941 cgtgccagcg cgcaagggct tcgatgccgt acagttcacc cgtttctgcg aagatttgcg
    18001 gctggtaaac aagtttcagt tggttattgc taatcgcttc tttcagcgct gcgcctaaaa
    18061 ccaaacgctc ttttaccatt tcgttcatcg ccgggctgaa gaactgccag ccgttaccgc
    18121 cattcttgcg aatataatct attgcattgt gagcagtgga gagtaggtaa tcgtggtttt
    18181 tacccacgtc gtagctgatg ccaatactca aggtaagcgg gaatggttta tcgtcaatca
    18241 ttatcggctt gctgaccaca ttccgtagct catcggcgat ctgggtaatg ttactgacgt
    18301 cgttttccag gctcacgagg acaaactgcg taccttcgat acgacagaga tactgatccg
    18361 gtttgagttt tccacgaaag cgattgacca cttccagcaa tgcctgatcg gcccacgcat
    18421 agccaaggct atcaatcaca tcctgaatat ggtcaacacc gatgagatac accaccggag
    18481 agacggcttt gtcgaccagg tcatcgaggt aattgtgctg gttattgcga tttggcagac
    18541 cggtcatcgg atcaaattgg atgagttgtt caatatgctg gcggcttttt tcctgttcca
    18601 gcgccagcgc ggccatatgc tgactgatat ctgccacgcg ttcgataaag gcgctggttt
    18661 ctgctcctga cgaggtttta atttgcagga tccccgcagg cgcgccatca cgctgacgaa
    18721 tggtcgctga ccagctttgc gcattttgaa cttctgcacc gtgcgaagat gacgcccagt
    18781 gtatcggcat cccgttgcgc agtgcgaaca gcgaaacatg cgattcgttg agaacagatt
    18841 cgatgttacg acaaatgatt tcccccattt catgaaatgg cgggctgctg cacatggcgg
    18901 cgagaatatt gccttcaagc tggcggattt gccgttcttc ggtgatatcc gagaaagtca
    18961 ttaccaggtt ctgcagatgc gcgagcacgt cataaaccgg gctgatagag gctttaatcc
    19021 agattttttc accggtgcgc gtcaacagca gaaattcgtc ctgatcgcgg gcggttttcc
    19081 atagcaactg ttgtaaacga atgcggttat cggcagggaa ttcaggaatg ttcaggagtg
    19141 tatcgggctg cataccgctg gcttcgctaa tgcagtaacc aaacatttcg gtaaatgcgc
    19201 gattgcactg cacaatatgg cgttccggat cgaggacaat caccggtcgg tcgagatggt
    19261 caacggcaat aatcaattgt cgggtctgtt ctttttgcgc catttctacg ctggcatccc
    19321 gtaccagcgc caggtaataa actttcccct cggcgctcac tttcgatagc gcaaaacggg
    19381 tccagatttt actgccgtct tttttctcca gctgcagctc ccgactcatc ccctcgacgc
    19441 gcgctttacc accttcacgg ttatgacgaa tgtattcagg atgcgcagga cgcaaatccc
    19501 gcggaatcag catatcaatg ttattgccaa tgacttcttc acgtttgtac ccccagagct
    19561 tctctgcggc ggggttgaaa aacatcactt catcattttc gttaattaac accgcgccca
    19621 tcatattttg ttcaagggcg gggaaaaaaa tgccatcggc ggcattttcc gcatcggtta
    19681 gcttcatgat tacctctgca tcctggcgca tctaaagact ggctttccag agttcaacac
    19741 ggtttctacc tcgtcttttg gcgatataca gagcttcatc ggctatttga atgaggcgct
    19801 catagtcagg atgaccatta aacatggcgg caccgatgga aagtgagagg gcaatatcct
    19861 cgccgtttgc ggctttcagt ttggttttct ccacccgact gcgaatacgt tctgcggtac
    19921 gtaacgtttc gttttcagaa gcttcagtca aaacaatgat aaattcatcg cccccgtagc
    19981 gaaaaacata atcactactg cggacgttgt cataaaaggc ctgagagact ttacgcagaa
    20041 tttcatcgcc agtgttatgg ccccacgtat cgttgatctc tttgaattta tcaacgtcaa
    20101 taatcagcac tgacagcggt gtaccggtcc ggttggcatg ggcaatttcg cgtttgaaga
    20161 tagtcggcag gaagcggcgg ttaagtaatt tcgtcagtac atccataccg acttcgtggc
    20221 gcgatacttc ttcaaacaat tcacgcagca aggtaataat ttgcgataca gtatttctta
    20281 tctgtaataa aaatttcacc cgcagacttc tgttattcaa attcctggtg ttacgcatgg
    20341 tttgattgaa tataccgtcg aaatcctgaa tcagacggga gatatgccta cttcggcaat
    20401 gccactaaaa taatgtcgac ctttatggtt aaaccacagg ccaaaatcag cctggcttaa
    20461 aggcaaacta ctgcctaaat cagaatccag caggatttta tagataatat ctatttccca
    20521 tgaaagtatt gaggctattt gccgttcttt ttcttcttcg gcgttttcta gtaacgagaa
    20581 gatacgatag ttttcatctt cctttgaggc actactgtca ctaaaggtaa acgcgcgggt
    20641 catcacttcc atagcgatat caatactgtt aatcgagaaa tggtagacct gaagtttttc
    20701 tgcggcagaa taatccgaag agaagattac cggatagagg atttttttca gcacccgaaa
    20761 ccccatctcg acaatttcta ccggaattcc tatgcgggca tgcacttccg cgacggtatg
    20821 ctggatttgt attagccttt cgacatcgtc aacctgggca gaaagcacgt taataatcca
    20881 gcgttccatc gcacttttca actgccgctc aacttgttca ttactcaaga attcttcggc
    20941 atgcgggtcg atgcggacaa ttcgataaaa ctcgatactc agataatgag catgcgcaac
    21001 ggcaatttcc gcggctttag cacgaatgag tggatctgcc tgttcgacaa gtccggtcca
    21061 ctcatctttc attcttttaa aatacatctc cataattcac acccttataa ggctgggaaa
    21121 tcagacggaa tcaaaacgca acgtgcgaga tcgactaact gcaccatatt ctcctgaaat
    21181 atgaagatat actgaaaaga aataagcgac ttaggacagt ttcaatctac gctactgttc
    21241 ttcagaagag tatagcccat cgtaattatt tttcggtgac agcgaatatc gtatggtttt
    21301 tcatattcat acatttttat tagggattta tagctgttta actaagtgtg gttaattgcg
    21361 tggttaattt gacttatgta agcatgatta ctagtgggat atttcacaag gtgtaacaag
    21421 ccggtgggta aagcaccggc ttgttacaaa gtaagcatgg gagtttaact gccccaacga
    21481 ctttgcagat agctgaccgc ttgttgagtc tgcggtttat tcagatagtc ctcacggaac
    21541 aagatggtgc cgctaatttc tggtaccgca tcgttaagat cgagctgctt tttcagttcc
    21601 ggtacgccgc cgttaatcat ccagtctggc tctatctttg aaggttcacc cactttatag
    21661 aaggcgatac cgatatacag gcgggtcctg gtcggtttaa cgacatccgc ccaccatttt
    21721 gccaacacgt cataacgcgc ggcactccgt gagaacggcc agtaaatttg gggagcaatg
    21781 taatccagca atccttgttc cacccatcga cgggtgtcag cgtaggattc gtcataggct
    21841 gccgcgcctc gggtatcgga accgagcgga tcgtgtgatc ggttacgcca cacgcctgcc
    21901 gggctaacgc caaattcgac tcccggctta atgcttttaa tggtgtgcga tacttttgta
    21961 attaactgct gagtattgtt gcgccgccag tctgcttttg acgcaaatgc gcctccgtat
    22021 ttacggtacg tttcgttatc atttagccgt gaacccggtg actccgtata gaaatagtcg
    22081 tcaaactgca cgccatctac cggatagcgg gaaaccactt cggcgactat tgatgtgatc
    22141 cagtcctgaa cctcagggat gcccgggtcg aggacaaagc gatcgccaga cgttctgatc
    22201 cagtcacggt gttgcacata gacgctcgcc ggttgttgag acagagtgct attcagttcc
    22261 ctgatagtac cgggcttcgt attaaccgat acgcgatagg ggttaaacca ggcgtgtact
    22321 ttcatcccac gcttgtgggc ttcgtcgagc ataaattgca gcggatcgta acccggattt
    22381 tcaccaatct taccggtcat aagatcggac cacggcaaaa tttttgatgg ccacagggcg
    22441 gtaccgtccg gcttgacctg gaaaaagacc gtgtttatac cgagacgttg cagatgatcc
    22501 agtttgtcga tcatcgcctg ttgttgtaca cgggcccggc tggtggggtt actaatgtta
    22561 accgaggaaa ccggtggcca gtcgaggcga gacaccgtgg ccagccagat gccacgcatc
    22621 ggttgtgacg attgttgcgt cgtggctggt ggctttgaac ctgctggtgg tgtcaccatg
    22681 gactctggag gcgtgctttt acaactacac agtaaaagtg ccagtgcaac cagtatcgct
    22741 ggtcttctaa tcgttaattt cttgtttcgg gagcagatat ccatatgtgc tggtttccgg
    22801 taaacagatg tgcgctcatt ctcgtactta tcccggttaa gtcaatacga cagcaagcac
    22861 gaaaaaggga gcgatgaatt atcgctccct tgtcttataa ccattcagac atggttagtg
    22921 tttcttgtca ttcatcacaa tatagtgtgg tgaacgtgca cgcgggtgca ggaagaagtg
    22981 accttttggt gcgttctgac tgttgattgg ctccagagtg acgccggtat tcgctttgcc
    23041 tttacgatca tgaacagcat agagaataaa gggcagggca agtaccacca ggaaactaac
    23101 gaccagtaat tcaacataca tatcggtaga gtcaccctgg atgttatccg gcggcaggaa
    23161 ggaaacaata aacgccataa ttgaagtcag cagaccgaca attgccacga ccagtttcac
    23221 ccctttacca ccagggatat taaatgtgcg ttttaagtca ggatgtttaa gaaccaacac
    23281 aatgtagcca ataaacagca tgaaataagc acacagataa atcaccaccg tcagcgccag
    23341 tgcgatcagg aaggacatgt tgttaccgcc accggtattg gtgaggatga tcaacgcgat
    23401 agaagtaatc accagctgcg aaatgaccag cgttaccggt acgccatttt tgttcatttt
    23461 agcgaatgcc gctggcagca ggtttttctg cgctgtgaca tacatcccgc gagaaggacc
    23521 aacaatccag gaggcgattt ccgccagaac acccagcaac agcagtgcgg agatcacgcg
    23581 aaccgtccac tcaatttccg gtgccacatg ggacatcaga acggtaaagg tttgcattac
    23641 ccctgcggag aggttgattt cattacccgg aatgaccatc gcaatagata aaccgccaac
    23701 agagcttaag cagattgccg ccaccatcag cagtaacata gccagtggat agtcgcgccc
    23761 ggggttgctc atttcattga cgtgagttgc ggaagcttct acgcccatat aactcaaaat
    23821 gaaggcaaca aatacaacca gtgtgcccac tttagagaag tcagggaaga aggtcttcga
    23881 atccatttcg atagcaacgg gggcaccgga gtgcagataa atagccgcta atgcgatcaa
    23941 aataaatgca ggtaacagga taccggcgaa gaagccaact ttagcaattc gcgccgtgta
    24001 tttcgtgcca ccaaactgcg ttaatgccag cgcccaaaga atgatgagtg ctgcaatagt
    24061 tttggtaatg gggtcttcat tcagcgctgg ccatttcagg atgtaggaga gtgcccctaa
    24121 cacgaaatag agcatcggaa taaaaccaat ggcgatttgc agatagccaa atgagatcgc
    24181 tgcaaatccc catctcggcc ccagagtatt tgatacccag gcgaagacac caccttcttc
    24241 ccagccgtcg acggtggcca tttccgcagc acaaagtccc acgggaataa accataaaat
    24301 cccgcctaat agcaggaaga agactaatga aaagcccgat gttgcgaagg tagggtattc
    24361 ataaacagcc attaccatcg atgccgttat ggcaaagaat ccgagtaatg tgagctgctt
    24421 agctttacct gtctgtactg atgtagccat attatccccc taaaacggta ttcctgtcgg
    24481 aaccgcacct gttttgttct gaagcgtatt cagaacaata ttttccgttg ctaatgccag
    24541 tgaacagact ttggaaattg tcccgaaacg ggttcgtttc gggacaccgt taccgttaaa
    24601 cgttatcagg tatgtttaaa gctgttctgc tgggcaatac cctgcagttt cgggtgatcg
    24661 ctgagatatt tcagggaggc tttgtagtct tccagcaaca gttcagcaaa gtccatttcg
    24721 aagccgcgac gacacataat
//
LOCUS       DAJVUY010000052        24734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.052, whole genome shotgun sequence.
ACCESSION   DAJVUY010000052 DAJVUY010000000
VERSION     DAJVUY010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.052"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(145..3000)
                     /gene="valS"
                     /locus_tag="OQQ72_001853"
     CDS             complement(145..3000)
                     /gene="valS"
                     /locus_tag="OQQ72_001853"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HCS2011609.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(3000..3443)
                     /gene="holC"
                     /locus_tag="OQQ72_001854"
     CDS             complement(3000..3443)
                     /gene="holC"
                     /locus_tag="OQQ72_001854"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HCS2011610.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            complement(3603..5114)
                     /gene="pepA"
                     /locus_tag="OQQ72_001855"
     CDS             complement(3603..5114)
                     /gene="pepA"
                     /locus_tag="OQQ72_001855"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HCS2011611.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            5381..6481
                     /gene="lptF"
                     /locus_tag="OQQ72_001856"
     CDS             5381..6481
                     /gene="lptF"
                     /locus_tag="OQQ72_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HCS2011612.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRRLRASFSRKGAV"
     gene            6481..7563
                     /gene="lptG"
                     /locus_tag="OQQ72_001857"
     CDS             6481..7563
                     /gene="lptG"
                     /locus_tag="OQQ72_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HCS2011613.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(7724..9226)
                     /locus_tag="OQQ72_001858"
     CDS             complement(7724..9226)
                     /locus_tag="OQQ72_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HCS2011614.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(9356..10375)
                     /gene="ahr"
                     /locus_tag="OQQ72_001859"
     CDS             complement(9356..10375)
                     /gene="ahr"
                     /locus_tag="OQQ72_001859"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HCS2011615.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            10571..10655
                     /locus_tag="OQQ72_001860"
     tRNA            10571..10655
                     /locus_tag="OQQ72_001860"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10605..10607,aa:Leu,seq:caa)
     gene            10819..12084
                     /locus_tag="OQQ72_001861"
                     /pseudo
     CDS             10819..12084
                     /locus_tag="OQQ72_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522431.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
     gene            complement(12139..13149)
                     /locus_tag="OQQ72_001862"
     CDS             complement(12139..13149)
                     /locus_tag="OQQ72_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011616.1"
                     /translation="MIYITSESKETLMIKYEGKMKKNIRVIPKNIHSKLRRLGNTVVA
                     GTSIAFTENQLKSGALEHLGIYFDNGVNAYETSVIPDPLQGKYSLKNVFGEEIVRKDL
                     PKETHYTEIESPNWGDSSNGTHTVRLPYEKYPRDIIPPTLIAIEINHKQPSDSHFIFN
                     FRVTRILDKQSNKFDDELLFDLNLLQENLGKCGIEDADKPISTYADTLIVSWEIFPPG
                     SKEETLARIFRGKNITSDKKNVAENRYDFFMSLEPKKIVTGNSTFSNYIGAMLEDDLV
                     VFENIEYGNAIYILYDNWDDISKLSRIDLLSGRAGSNFDRIIHSGNWKDEVRKKVAAG
                     RL"
     gene            complement(13100..13636)
                     /locus_tag="OQQ72_001863"
     CDS             complement(13100..13636)
                     /locus_tag="OQQ72_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011617.1"
                     /translation="MLKAIAGIAKYTWIYMAIFIISLMIISSSDINYVYNDFANYCTL
                     LVSVSGMVFTIMGIWLAFLYPNALQRIVNPKTIETVDFTEQLEDTRRLEAIVGSVLKS
                     SFVMITLLVVYLVKLVFFKSHLYLESQDVIKNTSLALIIAISYMQIEAVISVILANVM
                     FINDLHNKREQRDIDDQV"
     gene            complement(13637..14716)
                     /locus_tag="OQQ72_001864"
     CDS             complement(13637..14716)
                     /locus_tag="OQQ72_001864"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011618.1"
                     /translation="MNVGHLNFFKVNKCGLYKVNDDNTYGLELSETFDLIQDWVGTKS
                     LALTIPWDPKEKPNSSKCYCKDIYKDENTGDFLVMLWKSDTDSTGSLLGASEDGEIGS
                     SSVVKYTNSYRGKKVIWGRPCFYWVIPELETIVSIKFDHSVCDSELFQDYVHSSITNR
                     VKHSKRVKNKTEKGYIRLSNTDDEDLYKYMYRFDMKLRSLETTHTELGKLIPKITHIV
                     RRETIIINPNDARADWLKTFSTLVPFVSGKKNAKTRQIEIKAEAKPSLNEVQEIIEKY
                     SAEDREKRLWDNVGFATDKGITWVDKYRMRDILNVPSDDYSTYSAAYIYEQISHKRKE
                     FISPILKELKALQSQPRIKKASGED"
     gene            complement(15114..15686)
                     /locus_tag="OQQ72_001865"
     CDS             complement(15114..15686)
                     /locus_tag="OQQ72_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Polarity suppression protein"
                     /protein_id="HCS2011619.1"
                     /translation="MESTALQQVFDTCQNNKAAWLQRKNELAAAEQEYLRLLSGEGRN
                     VSRLDELRNIIEVRKWQVNQAAGRYIRSHEAVQHISIRDRLNDFMQQHGTALAAALAP
                     ELMGYSELTAIARNCAIQRATDALREALLSWLAKGEKINYSAQDSDILTTIGFRPDAT
                     SVDDSREKFTPAQNMIFSRKSAQLASRQSV"
     gene            complement(15760..16260)
                     /locus_tag="OQQ72_001866"
     CDS             complement(15760..16260)
                     /locus_tag="OQQ72_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS2011620.1"
                     /translation="MIYCPSCGHVAHTRRAHFMDDGTKIMIAQCRNIYCSATFEASES
                     FFSDCKDSGMEYISGKQRYRDSLTSASGSMKRPKRMLVTGYCCRRCKGLALSRTSRRL
                     SQEVTERFYVCTDPGCGLVFKTLQTINRFIVRPVTPDELAESLHEKQELPPVRLKTQS
                     YSLRLE"
     gene            complement(16257..16991)
                     /locus_tag="OQQ72_001867"
     CDS             complement(16257..16991)
                     /locus_tag="OQQ72_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001600374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein 3"
                     /protein_id="HCS2011621.1"
                     /translation="MSDNTIPEYLQPALAQLEKARAAHLENARLMDETVTAIERAEQE
                     KNALAQADGNDADDWRTAFRAAGGVLSDELKQRHIERVARRELVQEYDNLAVVLNFER
                     ERLKGACDSTATAYRKAHHHLLSLYAEHELEHALNETCEALVRAMHLSILVQENPLAN
                     TTGHQGYVAPEKAVMQQVKSSLEQKIKQMQISLTGEPVLRLTGLSAATLPHMDYEVAG
                     TPAQRKVWQDKIDQQGAELKARGLLS"
     gene            17543..17809
                     /locus_tag="OQQ72_001868"
     CDS             17543..17809
                     /locus_tag="OQQ72_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015979398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS2011622.1"
                     /translation="MQAVFSSPSPAPVTPLMPLPDITQERFLRLPEVMHLCGLSRSTI
                     YELIRKGEFPPQVSLGGKNVAWLHSEVTAWMAGRIAGRKRGYDA"
     gene            17806..18405
                     /locus_tag="OQQ72_001869"
     CDS             17806..18405
                     /locus_tag="OQQ72_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS2011623.1"
                     /translation="MMMPALQKLPFSGLPFSGICGYSFSAAAKSAAGRENPSNSQATY
                     DAPRVFFCVAINATERQIMVWCVVSRADGIPCILPASAHYAAESMVAQAGQPPGWPVS
                     CEAGILTPVWAIAIERENSGDSVICYSQEAAIMATTLTPSHPEFVFVFAAVRRADRHP
                     RICMLRTVAGDERSARRSLVRDYVLSLAARLPVVEVSRA"
     gene            18398..18685
                     /locus_tag="OQQ72_001870"
     CDS             18398..18685
                     /locus_tag="OQQ72_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Derepression protein"
                     /protein_id="HCS2011624.1"
                     /translation="MRNKKAPQTVSARHDAREHLSIEAYHKLNRASAVSQFVGGDLIH
                     RELSGLHQLYIPHIFSYLNEDIDFVLNELKAKGLCRDFLAQQKDRGDRTHV"
     gene            18678..19133
                     /locus_tag="OQQ72_001871"
     CDS             18678..19133
                     /locus_tag="OQQ72_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016569899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011625.1"
                     /translation="MFDFPQPGEIYRSAGFPDVAVVGILEDGIPWEMPYRCPDIVWNP
                     YRRKFSILVRILADGRTTDIPLGRFLREFTCDRPDLFKRSPVNRHAVLKEMAGDPELQ
                     KWREKYLDIYPQDTVPVSRAAPVAREWREIPRTEPDPEITPDNSYRNYL"
     gene            19269..19589
                     /locus_tag="OQQ72_001872"
     CDS             19269..19589
                     /locus_tag="OQQ72_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5375 domain-containing protein"
                     /protein_id="HCS2011626.1"
                     /translation="MKTPLPPVLRAALYRRAVACAWLTVCERQHRYPHLTLESLEAAI
                     AAELEGFYLRQHGEEKGRQIACALLEDLMESGPLKAAPSLSFLGLVVMDELCARHIKA
                     PVLH"
     gene            19604..21937
                     /locus_tag="OQQ72_001873"
     CDS             19604..21937
                     /locus_tag="OQQ72_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000783678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HCS2011627.1"
                     /translation="MKMNVTATVSHALGHWPRILPALGIQVLKNHHQPCPVCGGSDRF
                     RFDDREGRGTWYCNQCGAGDGLKLVEKVFGVSPSDVAAKVAAVTGSLPPADPAVTAAA
                     VAETDAARKNAAALAQTLMAKTRPGTGNAYLTRKGFPGRECRMLTGTHRAGGVSWRAG
                     DLVVPLYDDSGELVNLQLISADGRKRTLKGGQVRGTCHTLEGQNQAGKRLWIAEGYAT
                     ALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAADRDLSGDGQKKAAAAAD
                     ACEGVVALPPVFGDWNDAFTQYGGEVTRKAIYDAIRPPAESPFDTMSEAEFSAMSTSE
                     KAMRIYEHYGEALAVDANGQLLSRYENGVWKVLPPLDFARDVAGLFQRLRAPFSSGKV
                     ASVVDTLKLIIPQQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVE
                     GETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKS
                     IMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSGDGAGLKAITG
                     GDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERD
                     PQLKDKITRELAVIVRHLMQKFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIGYL
                     ETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVMLKEY
                     GLNYEKRHTKQGIQTNLTLKEESYGDWLPKCDDPATT"
     gene            22284..22478
                     /locus_tag="OQQ72_001874"
     CDS             22284..22478
                     /locus_tag="OQQ72_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS2011628.1"
                     /translation="MWIKDALVWIRATDPNLLIKNYLTFRFIDGLKIDWSEKQWGHKR
                     GHISLLCFIICFLSLTYFDI"
     gene            22696..23964
                     /locus_tag="OQQ72_001875"
     CDS             22696..23964
                     /locus_tag="OQQ72_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS2011629.1"
                     /translation="MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRF
                     GGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKV
                     AREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLE
                     VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKID
                     EYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRG
                     AKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYD
                     TKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLM
                     LQWWADFLDANREKGITPFDYAKINRGNGE"
     gene            24355..>24734
                     /locus_tag="OQQ72_001876"
     CDS             24355..>24734
                     /locus_tag="OQQ72_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011630.1"
                     /translation="MNFKKKLEEHFKQFEASPVLFVGSGVSRRYLGVPCWQDLLKHFA
                     EAIGENHIKLKTKSNGDLPEYAQLLVSAYAEKWWDTEEGQLALSEKEQEKTFINEQSP
                     LKLSISKYIENAHKNIIDNDELKH"
BASE COUNT         5891 a         6404 c         6134 g         6305 t
ORIGIN      
        1 ttcctttaat caataaagaa gaacaaccag ataaaggctt cttagccagt atttcacggg
       61 gaattatgcc ttctttacca tttctgtaag agataaaaaa ggccggagca tgctccggcc
      121 ttcgttttca tcactgtgtt ttgattacag cgcggcgata acagcctgct gttcaatcag
      181 cttcgctttc gcttctgcat agccttccag cttctcacgc tctttcgcga tgaccgcttc
      241 cggtgcgcgg gcgacaaagc cttcattcgc cagcttgttc tcgatacggc tgatttcgcc
      301 ttcgatcttc gccacttctt tcgccagacg cgccagctca tcttctttgt tgatgaggcc
      361 agccatcggg atcagcagct ctgcgccgtc gatgatcttc gtaacggaaa ccggaccttt
      421 gtcatcggca ggcagcacgg tgatgctttc cagacgcgcc agggtttgca ggaagccacg
      481 gttttcattt acgcgacgtt ctgcatccgc gctgcaacca cgcagcagca gctccagcgg
      541 tttgcccggc gcgatgttca tttctgcacg gatgttacgt accgcaacga tcgcctgttt
      601 cagccactcg gtgtcagcca gtgcggcttc atcaacctga gatgcatcgt actgcgggaa
      661 cggctgcagc atgatggtgt cggcagtgat accgcaaagt actttcacac gctgccagat
      721 ggtttcggtg atgaacggaa tgatcggatg cgcgaggcgc agcagacctt ccagtacagt
      781 caccagcgta tggcgagtac cgcgcagttc ggcttcggtt ccaccgttca ttaccggctt
      841 agtcagctcc agataccagt cgcagaactg gttccaggtg aactcataca gaatgcctgc
      901 agcgatatcg aagcggaagc tgtccagcgc ttcgcggtac gctttgatgg tctggttgaa
      961 ctctgccaga atccagcggt ccgccagcga cagcgtcatt tcaccaccgt tgaagccgca
     1021 atcctgacct tccgtgttca tcagcacaaa gcggctggcg ttccacagct tgttacagaa
     1081 gttacggtag ccttccaggc gtttcatatc ccagttgatg tcacgaccgg tagaagccag
     1141 cgccgccagg gtgaagcgca gggcatcggt gccgtgcggc tcaatgccgt tcgggaactg
     1201 tttctcggtg cgcttacgga ttttgtccgc cagctgcggc tgcatcatat tgccggtacg
     1261 tttctccagc agttccggca gcgaaatacc gtcaaccata tccagcgggt caataacgtt
     1321 acccttggat ttggacatct tctggccttc gtcgtcacga atcaggccgg tcatgtaaac
     1381 ggtgtggaac ggcacctgcg gtttgccatt ttcatctttg atgaagtgca tggtcatcat
     1441 gatcatgcgg gcaatccaga agaaaatgat gtcgaaacca gataccatca cgctggttgg
     1501 gtggaactgg cgcagtgcgt cggtgttttc cggccagcct agggtagaga aggtccacag
     1561 cgcagaagag aaccaggtgt cgagaacgtc ttcgtcctga cgcagggcaa cgtcggcacc
     1621 gaggttattt tccttgcgca cttcttcttc gttgcggcca acataaacgt tacctgcttc
     1681 gtcgtaccat gcagggatac ggtgacccca ccacagctga cgagagatac accagtcctg
     1741 aatatcgcgc atccaggaga agtacatgtt ttcgtactgc ttcggtacga actgaatgtc
     1801 gccgttctca accgcctcaa ccgccggttt cgccagtaca tcggcacgca cgtaccactg
     1861 gtcggtgagc atcggttcga taactacgcc gccacggtcg ccgtaaggca cggtcaggtc
     1921 gtgcggttta atttcttcca gcaggccgag cgcgtcaacc gcagcaacga ctgctttacg
     1981 tgcagcaaaa cgctccagtt tctggaactc tgccgggatt tcgctggaat aaacgtcaga
     2041 ttcgttacct ttggtatcga acacctgggc gctttcacgg atatcgccgt caaaggtcag
     2101 gatgttgatc atcggcagcg cgtgacgttt acccacttca tagtcgttaa agtcgtgcgc
     2161 cggagtgatt ttcacgcagc cggtgccttt ttccatgtcg gcgtgttcgt cgccaacgat
     2221 cggaatacga cggttaacca gcggtagaat gacatatttg ccaatcaggt ctttgtaacg
     2281 cggatcttcc gggttaacgg ccacgccggt atcgcccaac agggtttccg gacgggtagt
     2341 cgcaaccacc agataatctt taccgtctgc ggttttcgcg ccgtcagcca gcggatagcg
     2401 gatgtgccac atcgaacctt tcgattcgcg gttttccact tccaggtcag agatagcggt
     2461 gcgcagtttc ggatcccagt ttaccaggcg tttgccacgg taaatcaggt cttctttata
     2521 cagacgaacg aaaacttctt tcaccgcatt ggacaggcct tcgtccatcg tgaagcgttc
     2581 acgctcccag tcgacggagt tgccaagacg gcgcatctga cgggtaatcg tgccgccgga
     2641 ttccgctttc cattcccaaa ttttgtcgat gaaagcttcg cggccgtagt cgtgacgggt
     2701 tttaccttct tctgcggcaa tcttgcgctc aacgaccatc tgggtagcga tcccggcgtg
     2761 gtcagtaccg acctgccaca gggtgttttt gccctgcatg cgctgatagc ggatcatggt
     2821 atccatgatg gtttgctgga aggcgtgacc catatgcaaa ctgccggtga cgttcggcgg
     2881 cgggatcatg atgcagaaac tttcctggct ttcatcgcca ttaggcttaa agtagccctg
     2941 cttttcccag tgctcgtaaa gcggctgttc gatatcttgt gggttatatg tcttttccat
     3001 tatttccagg ttgccgtatt caggttgaaa ccagccacgc ggtaggcttt atagcgttcg
     3061 cgcgccagtt gtttcagaga atcttcataa ggaacgaagt ctaccacttc tgtgaaagcg
     3121 gtggcaaaat ctgcaaagct tgttcgcaga ctaatcaata tatcgcgcgg gctgctgctg
     3181 cgtttttgcg gccaggcgat ctccaccggc gcaccgccgc gcggtccttc tcccgctaaa
     3241 ttatgcggaa caaagctttc tgccggacgc gcccacaggg cttcatccag ccggtaagcc
     3301 tgcttttcat cttcacaggc gatgagcacg cgcttaccgc tgcgccaacg ttctgcggca
     3361 atttcacaca ccagttgctc aacggcgctt aagccatcga cggtggtgtc attgtccaga
     3421 aggtagaacg tcgcgttttt catatatggg gcttcttgtg gtggatttaa atacgcatca
     3481 ggtatacacc gcagcgcctg atgcgacgct gttgtgtctt atcaggccta cgagttcagt
     3541 gctgtgtagg tcggataagg cgttcacgcc gcatccggca ataacagcct tgcctgacgc
     3601 aattactctt cgccgttaaa cccagcgcgg tttaacagga actgtgccag caacgccacc
     3661 ggacgaccgg tggcgccttt tgctttacca gaacgccagg cggttccggc gatatctagg
     3721 tgcgcccagt tgtacttacg ggtaaagcgc gacaggaagc aacctgcggt aatcgcccca
     3781 ccaggacgac cgccaatgtt cgccatatcg gcaaaattgg actccagctg ttcctgatac
     3841 tcgtcaccca gcggtaagcg ccatgcgcgg tcaccggatt gttcagacgc ggcaatcagt
     3901 tcatgggcca gcggattatg gttcgccatc agaccggtaa tgtgatgacc cagcgcgatc
     3961 acgcaggcac cggtcagcgt cgccacgtca atcaccgctt ccggctcaaa acgctcaacg
     4021 taagttaaca cgtcgcacag taccaggcgg ccttcagcgt cggtattcag cacttcaaca
     4081 gtttgaccgg acatggtggt taacacatcg cccggacgat aggctcgtcc gccaggcatg
     4141 ttttcgcagc ctgccaacac gccgataacg ttaatcggca gttgtagctc cgcgaccatc
     4201 cgcatcacgc cgtaaaccgc tgccgcaccg cacatatcgt acttcatctc atccatgcct
     4261 tctgaaggct tgatcgagat accgccggag tcgaaggtta aacctttacc caccagcacg
     4321 attgggcgtg catcttccga cgcgttgcct ttgtactcaa tcaccgacat cagcgattcg
     4381 ttttgcgaac cctgaccgac cgccagatag gaatgcatcc ccagctcttt catctgctgt
     4441 tcgccgataa cgcgggtgat gacattcttg ctgtagctgt cagccagctg gcgcgcttgt
     4501 gaagcgaggt aagcggcgtt acagatattc ggcggcatat tgccgagatc ttttgctgct
     4561 ttaatcccgg cggcaatcgc cagaccgtgc aggatcgcgc gctcaccgct ggtcagttca
     4621 cggcgggtcg gcacgttgaa caccatttta cgcagcggac gacgcggttc gctcttgttc
     4681 gttttcagct gatcgaaact gtagagcgtc tcttttgccg tctcgacagc ctgacgcact
     4741 ttccagtagt tgttacggcc tttaacgtgc agttcagtca gaaagcagac cgcttccatt
     4801 gagccagtat cattcagcgt attaatggtt ttctgaataa cctgcttgta ctgacgctca
     4861 tccagctcac gttctttgcc gcaaccaata aggagaattc gctcggaaag tacattcgga
     4921 acatggtgca gcaacaatgt ctgccccggt tttccttcca gttcgccccg acgtagcagg
     4981 gcgctgatgt acccatcgct gattttatcg agctgttctg caatcggaga aaggcgacgt
     5041 ggttcgaaga cgcccacgac gatgcaggca ctccgctgtt tctccgggct accgcttttt
     5101 acactaaact ccatgcacta cgctcctgaa tcttaaagac aacggcggtg gctacagata
     5161 gaattgcaag ctttcgtaac tcatgtccgc tgttgcgatg acttcgtgtt aatcttaacg
     5221 ttattacggc attggcacgt cagaacaaaa tctgagaggt gaatccgttg agtataatta
     5281 tcttagcgac gatttcgacg actcaagaga ataaatgacg tttaagccat gaaacaagct
     5341 aaaatcctgc aaaagacgag tttttacggg cgtatttaaa gtgataatca taagatatct
     5401 ggtgcgggag acgctcaaaa gccagctggc gatactcttc atcttgcttt tgatcttctt
     5461 ctgtcaaaag ttagtgagga tcctcggcgc agcggttgac ggcgatattc cggcgaatct
     5521 ggtgctctcc cttctcgggt tgggcgtgcc ggaaatggcg cagcttatcc tgccattaag
     5581 cctgttcctc gggctgctga tgacgctggg caaactgtat accgaaagtg aaattacggt
     5641 aatgcatgcc tgcggcctga gcaaagcggt tctggtgaaa gcggcaatga tccttgcggt
     5701 attcactgca atcgtcgcgg cggttaacgt gatgtgggcg ggaccgtggt catcgcgtca
     5761 tcaggatgaa gtgttagcag aagcgaaagc gaaccctggc atggcggcgc tggcgcaagg
     5821 gcaattccag caagcgacta atggcagctc ggtgctgttc atcgaaagcg ttgacggcag
     5881 cgatttcaaa gatgtgttcc tcgcgcaaat tcgaccaaaa ggtaatgcac gtccttctgt
     5941 ggtggtggcc gattccggac atttaaccca gctgcgcgac ggctcccagg tcgtcactct
     6001 caaccaggga acgcgcttcg aaggcactgc actgttacgt gatttccgca ttacggactt
     6061 ccaggattat caggcgatca ttggtcacca ggcggtagcg ctcgacccga acgataccga
     6121 ccagatggac atgcgtacat tgtggaacac tgacaccgat cgtgcccgcg cagaactgaa
     6181 ctggcgtatc acgttggtat tcaccgtgtt tatgatggca cttatggtcg taccgctgag
     6241 cgtggttaac ccgcgtcagg gacgcgtact atcgatgctg ccagccatgc tgctgtatct
     6301 acttttcttc ctgatccaga cctccctgaa atcgaacggc ggtaaaggta agctggaccc
     6361 gacgctgtgg atgtggaccg ttaacctgat ttatctggct ttggcgattg ttctcaacct
     6421 ttgggacacc gtgccggtcc gccgcctgcg cgccagtttt tcgcgtaaag gagcggtgtg
     6481 atgcaacctt ttggcgtact tgaccgctat atcggtaaaa ctattttcac caccatcatg
     6541 atgacgctgt tcatgctggt gtcgctgtcg ggcattatca aatttgtcga tcagctgaaa
     6601 aaagccgggc aggggagtta cgacgcgtta ggcgcaggaa tgtatacctt gctgagcgtg
     6661 ccgaaagatg tgcaaacatt cttcccgatg gcggctctgc ttggggcgtt gcttggtctt
     6721 gggatgctgg cgcagcgcag cgaactggtg gtgatgcagg cttctggttt cacccgtatg
     6781 caggttgcgc tgtcggtgat gaaaaccgcc attccgctgg tcttgctgac gatggcgatt
     6841 ggtgaatggg tcgcgccgca gggcgagcag atggcgcgta actaccgtgc gcaggcgatg
     6901 tacggcggct cgttgctctc tacccagcaa ggcttatggg cgaaagatgg caacaacttc
     6961 gtttacattg agcgggttaa aggtgacgaa gagttaggtg gcatcagtat ttatgccttt
     7021 aacgagaatc gtcgtctgca atccgtacgc tatgccgcta ctgcgaagtt tgacccggaa
     7081 cataaagtct ggcgtctgtc gcaggttgat gaatctgatc tgaccaatcc gaaacagatc
     7141 accggttcgc agacggtgag cggcacctgg aaaaccaacc tcacgccgga caaactgggc
     7201 gtggtggcgc tggacccgga tgcactctca atcagcggtt tgcacaacta cgtgaagtat
     7261 ctgaagtcga gcggtcagga tgccggacgt tatcagctca atatgtggag caaaatcttc
     7321 cagccgctat ccgtggcggt gatgatgctg atggcgctgt cgttcatctt tggcccactg
     7381 cgtagcgtac cgatgggcgt gcgtgtggtc accggtatca gcttcggttt tgtcttctac
     7441 gtactggacc agatcttcgg cccgctgacg ttggtttatg gcatcccgcc gatcatcggc
     7501 gcactgttgc caagcgccag cttcttctta atcagcctgt ggctgttaat gagaaaatcg
     7561 taaccgaatg aacgaataaa gggagcgaaa gctcccttta ttattgttag caaagtgtgc
     7621 ttcgttcatg cctgaaaaat catgaaaatc caatatattg cagtggtgta ggcatgataa
     7681 gacgcgccag cgtcgcatca ggcaaagaca aatctcgcct gacttacctt cttcttcccc
     7741 ccagcaaact ccccaacatc ccacgtacaa tctgattcgt cacctggcgg gcggcgcttt
     7801 tcgccattgt ttgcaccaca ccatctttct tcccgccgcg tggtccggta gtgccaaaca
     7861 aaatatcctt caatccacca agaataccgt catccaccgc caccgctttc cctttcgcgg
     7921 gaggattatt ttgctgcttg gtactggcct gaaagccttt ttgcaacatc tcataggcgg
     7981 attcccggtc cacgtcatcc tcgtacttgc catacaccgg ggagtggtta atcaagccat
     8041 tgcgctcatc ttccgtcacc ggtcccatcc gcgaacaagg cgcaatcacc atcgcccgtt
     8101 ccaccacaga aggacttcct tttgcatcga gaaacgagat taacgcctcg ccggtcccca
     8161 gttcctggat tgccttttcg gtatcaaacg ccggattggc ccgcatggtt tgcgccgcag
     8221 cttttaccgc tttctgatct ttgggcgtaa aagcccgcaa agcgtgttga acgcgattac
     8281 cgagctgccc gagcacatta tccggaatat cagacgggtt ttgcgaaacg aaccagacgc
     8341 ccacgccttt tgagcgaata agccttatta cctgctcaat cttatccagc agtacctgcg
     8401 gtgcatcgtt aaacagcaga tgtgcctcgt cgaagaaaaa caccagtttt ggtttctcca
     8461 gatcgcccgc ttccggcaat tgttcataca actctgaaag catccacagc aggctggcgg
     8521 cgtacagttt cggcatctga taaagcttct cggcgctgag gatattgata acgcctttac
     8581 cgttggtatc ggtgcgcatc cagtctttga tatccagcat cggctcgcca aagaaatgcg
     8641 ccgcaccttg cttttccagc gacagtaaac cgcgctggat ggcaccaacc gatgcgctac
     8701 tgatattacc gtactgattc tggaaagatt tggcgttatc gccgatgtac tgggtaatcg
     8761 cccgcagatc tttaaagtcg agcagcaaca atccctgatc gtcagcaata cggaagatga
     8821 tattcagcac gccagattgc acatcgttga gattcaacag ccgcgccagc aacagcggcc
     8881 ccaggtctga aaccgtcgcc cgcaccggat ggcctttctc gccaaagata tcccacacca
     8941 ccaccggatt agcatgcggt tgccagtcat tgacgccgat atttttaagc cttgtgagca
     9001 gtttttccga cgccgttcct gcctgcgcga taccggtcag atcgcctttc acatcagcca
     9061 taaacaccgg cacgccgatt tccgacaatg actctgccag tttttgcagc gtaacggttt
     9121 tacccgtccc cgttgcgcca gtaatcagcc cgtgacggtt agccattccc ggcagtaaaa
     9181 aaagttctgt gtccggcgtg cgggcaatta ataggggttc gctcatgaga tttcctccag
     9241 tttcctgcct ggagtatagg caacggctgc gcactcttca ccgctaaatt cagcagattg
     9301 cgagacgcct tccaaagaga tttaagtgcc gggcgacagg cacccggcaa agggatcaga
     9361 agtcggcttt cagaaccacg cggtaacgcg ccttaccgtc gcgcacatgc ttgatggcat
     9421 cgttaatttt cgacatcggg aacagttcgg tggtcggcgc aaccttgcta cgggcggcaa
     9481 agcgcatcag ctttcgcagc tcataaggcg tgccggtagc agaaccagag atgctgcggt
     9541 cgcccgcaat taacgtaaag gccggaacag acagcggcgt gagaaccgca ccgaccgtat
     9601 ggaaattacc gccataggtc agcgcctcaa aataaggctg ccagtcgagg ctgacgttca
     9661 cagtattgat aatgagatca aactgccccg acagggcttt cagtgcctgc ggatcgcggc
     9721 tattcaccac tttatcggca cccatcgcca gtacttcctg ctctttcgcc ggattagaac
     9781 taaaggccgt cacctcgcat cccattgcgt gcagaagttt tatagcgata tgccccagcc
     9841 cgccaatacc aattacccca acgcggctgg tagcagtgat atggtgcatc aacagtggtt
     9901 taaagaccgt gataccgccg cacaacagcg gcccggcgga ctcgatatca atattttctg
     9961 gcagtggaat cacccattgc cagtccgcac gcaacttctc ggcaaagcca ccgcgattca
    10021 taatcgtcgg caccgcacct tgctcgcagt tgatctgatt accgctaata caggcgtcgc
    10081 agtgaccaca gctacgcgcc gtccagccaa tcccgacacg ctgaccgacc tgcaaacctt
    10141 tatcctgcgc ggcgctcccg agtgccacca cgcgcccaat cacctcatgc ccggcaacca
    10201 gcggatattg tgaaaatccc cattcattgt cgatcatcga tagatcggaa tggcagatcc
    10261 cgcaataatc cacctgcact tcaacatctt gtggcctcag ctcaccggga tcgtactcat
    10321 aaacttccag ttcgccgccc gcttcttttg cggcatagct ttttatcatc gacatttttt
    10381 ggtccttctc tggtgttgtt tgggaagtgt agagcatggc agggcggggt gcctggagtg
    10441 tgacaaaggt tacacatcgc tgtgtgcaat gctgaaaatt tcagcactta gcgaggtgcg
    10501 agcaagctgg cgcttgcatg gtggcgtgcg acaggtataa tccacaacgt tttccgcata
    10561 cctcttcagt gccgaagtgg cgaaatcggt agacgcagtt gattcaaaat caaccgtaga
    10621 aatacgtgcc ggttcgagtc cggccttcgg caccattctt acttccaaga ccatccgaga
    10681 aagtccaaat atccctttaa aatcaatgct tgcagcgatt ttttcgtcct gcgtcttccg
    10741 aggttgtccg ttgaaatccg gatatcattg ggggcataat tgggggcatc ttaacttcga
    10801 ttagaaatgt gcccccaaat gaagctcaac gccagacagg tcgagaccgc aaagccaaaa
    10861 gacaaaacct acaaaatggc cgatggtggt ggtttgtatc ttgaggtttc ggccaaaggt
    10921 tccaaatact ggcgcatgaa atacagacgt ccctctgaca aaaaagagga tcgtctcgcg
    10981 tttggtgttt ggcctactgt gacgcttgct caggcaagag caaagcgcga tcaagctaaa
    11041 aagctgttag cgcagggcat tgatccaaaa gccgaataga aagaagctca ggccgagaat
    11101 tcgggggcat attctttcga aactatcgct cgtgaatggc atgctagtaa taagcgctgg
    11161 agtgaagatc accgatcacg cgttctacgt tatcttgagc tttatatctt tcctcatatt
    11221 ggttcatctg acatccgtca gctcaaaact agccacctat tagccccgat taaaaaagtt
    11281 gatgccagtg gtaagcatga cgttgcacag cgccttcagc agcgtgtcac ggctattatg
    11341 cgttatgcag tacagaacga ttacatcgac tcaaatccag ccagtgatat ggccggtgcg
    11401 ctatcgacaa ccaaagcgcg acattacccc gctttgccct ccagccggtt ccctgagttt
    11461 cttgctcgtc ttgctgcata tcgtggccgt gtaatgacgc ggatcgcggt tgagctttcc
    11521 ttactaactt ttgtgcgttc cagtgagtta cgtttcgcgc gttgggatga gttcgacttc
    11581 gataaatctc tctggcgagt acctgcaaaa cgagaagaaa ttaaaggtgt gcgttactcg
    11641 taccgtggca tgaagatgaa agaggagcat atcgttcagc ttagtcggca ggcgatgatt
    11701 ttgctaaacc agttaaagca gattagtgga gataaagagc tgctttttcc gggtgatcat
    11761 gacgcaacta aggttatgag cgaaaacacg gtaaatagcg cattgcgtgc gatgggctat
    11821 gacacgaaaa ccgaagtttg cgggcacggg tttagaacga tggcccgtgg tgcgttgggc
    11881 gagtccggat tatggagtga agatgctata gaacgacagt tgagccattc agagcgtaat
    11941 aatgtacgtg ctgcttatat tcacacctct gaacatttgg atgaacgtcg attgatggtt
    12001 caatggtggg ctgattatct ccaagcaaat aagggcaaaa caataacacc ttatgatttt
    12061 gctaaaataa acaaaagtcg atagtgaaaa taaacgccta taatatatag gcgtttattt
    12121 ctgtattaaa cactttgatc ataatcttcc agcagcaact ttttttcgta cttcatcttt
    12181 ccaattgcca ctatggatta ttctatcgaa attacttcct gctcttcctg ataataagtc
    12241 aattcgagat agcttgctga tatcatccca gttatcatag aggatatata tagcattacc
    12301 atattctatg ttttcaaata caaccaaatc gtcctccagc atagctccaa tataattact
    12361 gaacgtgctg tttcctgtga cgattttttt aggttcaaga ctcatgaaga agtcatatct
    12421 attttcagcg acatttttct tgtcggaagt gatattttta cctctaaaaa ttcttgctaa
    12481 agtttcttct ttactacctg gtggaaatat ttcccatgag actataagtg tatcagcata
    12541 agtcgatatg ggtttatcag catcctcaat tccacattta ccaagatttt cttgaagaag
    12601 atttaaatca aataataatt catcatcaaa cttatttgat tgtttgtcta aaattctagt
    12661 tactctgaag ttaaatatga aatggctgtc cgagggctgt ttgtgattaa tttcaatggc
    12721 tatgagtgtt ggtggtataa tgtctctggg atatttctcg taaggtaatc taacagtatg
    12781 tgtaccatta gagctatcac cccagttagg tgactcaatt tcagtgtaat gagtttcttt
    12841 tgggaggtct tttctgacaa tttcttcacc aaaaacattt ttaagtgaat atttaccctg
    12901 caatggatct ggtatgaccg acgtctcata agcattaaca ccattatcaa aatatattcc
    12961 aaggtgctct aatgctccac tttttaattg gttttccgta aatgcaatag aagtgccagc
    13021 aacaactgta ttaccaagcc ttcttaactt gctatgaata tttttaggta taacacgtat
    13081 attctttttc atttttccct catacttgat catcaatgtc tctttgctct cgcttgttat
    13141 gtaaatcatt gataaacata acatttgcaa gtattacgct aattactgcc tcaatctgca
    13201 tgtacgaaat agcaataatt aatgctaaag atgtgttttt tattacatct tggctctcta
    13261 aataaagatg acttttgaaa aacactagtt taactaagta tacaacaagt aaagtaatca
    13321 taacgaaaga tgattttaga acacttccaa ctattgcttc taatcttctt gtatcttcca
    13381 gttgttcggt gaaatcaacg gtttctatag ttttggggtt cacaatacgc tgcaaagcat
    13441 ttgggtaaag aaacgctaac caaattccca taatagtaaa aaccattcca gaaactgata
    13501 cgagaagagt gcaatagttg gcaaaatcgt tatacacata gttaatatcg gatgacgaaa
    13561 taatcatcag cgatataatg aatatcgcca tgtatatcca tgtgtatttg gctatgcctg
    13621 ctatagcttt caatattcaa tcctctccag atgctttctt tattcttggt tgagattgta
    13681 atgcttttaa ttcttttaat ataggggaaa taaattcttt tcttttgtgt gatatttgtt
    13741 cgtaaatata tgcggcggaa tatgttgaat agtcgtcaga agggacattg agaatatcac
    13801 gcattctata tttatccacc caagttatac ccttgtctgt agcaaatcca acattgtccc
    13861 aaagacgttt ttctctatcc tcagccgaat acttttcaat gatttcttga acttcattca
    13921 aggatggttt tgcttctgct tttatttcaa tttgtcttgt tttggcattt ttctttccgg
    13981 acacaaatgg aacgagagtg ctaaaggtct ttaaccaatc agctcgtgca tcatttggat
    14041 ttataataat agtttccctg cgaactatgt gtgttatttt tggtattagt ttacctaact
    14101 cagtatgagt ggtttctaag cttctgagct tcatatcaaa cctgtacata tatttatata
    14161 agtcttcgtc atcggtatta gatagcctta tataaccttt ctcggtttta tttttaaccc
    14221 ttttgctatg tttaactcta ttagtaatag atgagtgtac atagtcttga aatagttcag
    14281 aatcacaaac agaatggtcg aatttaatgg atactatagt ttcaagttca ggtataaccc
    14341 aataaaagca tggccgcccc cagataactt ttttccctct gtagctatta gtatatttaa
    14401 ccaccgatga gcttccgatt tcaccgtctt cactagctcc taataaagag cccgtactat
    14461 cagtatcaga tttccataac atgactaaga aatcaccagt attttcatcc ttataaatat
    14521 ccttgcaata acactttgaa ctgtttggtt tttcttttgg atcccatggt atcgtgagtg
    14581 caagagattt agttcccacc caatcctgta tgaggtcaaa tgtttcgcta agttctaaac
    14641 cataggtatt gtcatcattt accttgtata aaccgcactt attaaccttg aagaaattga
    14701 gatgccctac attcatgctc tttccttagc ttcttatctt gggatatgta tcatgttcaa
    14761 aaattaagca taaccccatt gacttcgtgc gggcaatgtt ttcaccctag aatttgatcg
    14821 gtttaacgtt aaatattcat aagttacatg agcatttttc acttcttccc aattacagac
    14881 gtcatgagct gaatattaat aaaataatta tcctcacggc atggcgcgca atgctctccc
    14941 cgccacgccc gcccgctttg cagggcggtt ttaatgcagt tgcacagtca cgctcaggct
    15001 gcgccgggaa tggcgcggtc tgcagaaaat gaggcaggaa aacgcatgca aagccatgca
    15061 ccttatcgat gcatggcttt tttcagtaaa aacgggcgga ttttcgggga attttacaca
    15121 gactgacgtg atgccagttg cgcactttta cgcgaaaaaa tcatgttctg cgcaggggtg
    15181 aatttttcac ggctgtcatc caccgaagtc gcgtcaggcc tgaatccgat ggtcgttaaa
    15241 atgtcactat cctgtgcgga ataattaatt ttttccccct tcgcaagcca ggacagaagg
    15301 gcttcacgca gggcatctgt ggcacgctgt atggcacagt ttcgggcaat ggccgtcagc
    15361 tcactgtagc ccatcagctc cggtgccagt gccgccgcca gtgctgtgcc gtgctgctgc
    15421 ataaaatcat tcagccggtc gcggatgctg atgtgctgaa cggcttcatg cgaacgaata
    15481 taacgaccgg cagcctgatt cacctgccat tttctgactt cgataatatt gcgtaattcg
    15541 tccaggcgac tgacgtttct gccttccccg gacagaagcc gcagatattc ctgttcggcc
    15601 gcagccagct catttttgcg ttgcagccat gctgctttgt tattctgaca ggtgtcaaag
    15661 acctgctgta aggctgtgct ttccatcgtt atctctttct catcatgctg aagaataaaa
    15721 atacggtgtg cggcgacggc cggtgttaac cggcagccct cattccagac gcagcgaata
    15781 tgattgtgtt tttaagcgta ctggcggcag ttcctgtttt tcatgcaggc tttctgccag
    15841 ttcgtccggc gtgaccgggc ggacaataaa acggttgatg gtctgaagcg ttttaaacac
    15901 cagaccacag cccggatccg tgcacacata aaaacgctcg gtgacttcct gagacagacg
    15961 ccgcgatgtt cttgacagtg caaggccttt acatctccga caacaatatc cggtaacaag
    16021 cattcttttc gggcgtttca tactgccgga ggctgacgtc agtgaatcgc ggtatctctg
    16081 tttgcctgaa atgtattcca ttcctgaatc tttacagtca gagaaaaagc tttcactcgc
    16141 ttcaaatgtc gcagagcaat aaatattccg gcactgtgca atcattatct tggtgccatc
    16201 gtccatgaaa tgtgcgcgac gggtgtgagc aacatgtcca cacgacgggc agtaaatcat
    16261 gacagcagtc ctctggcctt aagctctgct ccctgctggt ctattttgtc ctgccacacc
    16321 ttgcgctgtg ccggtgtgcc tgccacctca taatccatgt gcgggagtgt tgccgctgac
    16381 agtccggtca gccggagaac cggctcgccg gtgaggctga tttgcatctg tttaattttc
    16441 tgttccagcg atgatttcac ctgctgcatg acagcctttt ccggtgcgac gtagccctga
    16501 tggccggtgg tgttggcgag cggattttcc tgtaccagga tactcagatg cattgcccgg
    16561 acaagcgcct cacaggtttc attcagggcg tgttccagct catgctctgc atacagactc
    16621 agcaggtgat gatgtgcctt ccggtaggcg gtggccgtgc tgtcacacgc ccctttcagg
    16681 cgttcacgtt caaaattcag caccacggcc agattgtcat attcctgtac cagctcccgg
    16741 cgtgccacgc gctcaatgtg gcgctgtttc agctcgtcgc tcaggacacc accggctgca
    16801 cgaaaggccg tgcgccagtc gtcagcgtca tttccgtcgg cctgcgccag cgcatttttt
    16861 tcctgctctg cccgttcaat ggccgtgacg gtctcatcca tcaggcgggc gttctcaagg
    16921 tgggcggctc tggccttttc cagttgtgcc agtgcgggtt gcagatattc agggatggtg
    16981 ttgtcagaca ttttccggct cctcgtcact tcaggttaag aaaattgtga cgtacaccgg
    17041 acaacaacac gacgcattgc agatgtgcca gccctgacac aggagactca tcctcagacc
    17101 ggcaagccag gaaaaggtcg caggaaaaac cggcttactg tttgtttttt tatattttac
    17161 tgttcacctc tgttcaccat aagaaaaaag ataagtaata cagtaagtta aagggtgaac
    17221 aatcgcagta atgactgttc accgtctgtt caccactgtt cacccgctca tagacttttt
    17281 gtgctgttta ttacttttta tttttattaa tccactgaaa taaataagaa aaaacaattt
    17341 gtatttcact ataatttttt ccagctcctt ccagagcgtt ttaaagccat ctggcgctga
    17401 tgtataaaaa atacacagcc attgtaagac tgccggaaca aatcccccct gttgcatctg
    17461 ccaaaaatat tcacaaaata aagcgctacc cgaagccgga cggacttatc cggtgctgta
    17521 tggacattaa cgaggtagcc cgatgcaagc tgttttttct tccccgtctc ccgcccctgt
    17581 gacgccactg atgccgctgc cggacatcac gcaggagcgt tttttacgtc tgccggaagt
    17641 gatgcacctg tgcggcctgt cacgctcgac catctatgaa ctcatccgta agggggaatt
    17701 tccgccgcag gtgagtcttg gcggtaaaaa tgtggcctgg ctgcactctg aagtcaccgc
    17761 atggatggcc ggacgcattg ccggacgcaa acgggggtac gacgcatgat gatgcccgct
    17821 ctgcaaaaac tccctttttc tggcttgcct ttttccggca tttgcggata tagtttttcc
    17881 gctgccgcaa aatcggcagc cgggcgtgag aacccgagca attcacaggc gacatatgac
    17941 gcgccacgcg tctttttttg tgtcgcaatc aatgccacag agcgccagat tatggtgtgg
    18001 tgtgtggtca gtcgtgcaga tggcattccg tgcatcctgc ccgcgtccgc tcattatgcc
    18061 gcagagtcaa tggtagctca ggcggggcag cctccgggct ggccggtatc ctgtgaagcc
    18121 ggtattctca cccccgtctg ggctatcgcc atcgagcgtg agaactccgg cgatagcgtt
    18181 atttgctatt cacaggaggc tgccatcatg gctacaaccc ttaccccctc acaccctgaa
    18241 tttgtctttg tgtttgcggc tgtccgtcgc gcagaccgtc atccccgtat ctgtatgctt
    18301 cgcaccgtgg ccggtgatga acgcagtgcc cgccgttccc ttgtccgtga ctatgtgctc
    18361 tcccttgctg cccgtctgcc ggtggtggag gtgtcccgtg cgtaataaaa aagcccctca
    18421 gaccgtctca gcacgtcatg acgcccgtga acacctcagc attgaggctt accataagct
    18481 caaccgcgcc agcgccgtat cccagtttgt tgggggtgat ttgattcacc gtgaactctc
    18541 cggcctgcat cagctctaca ttccgcatat tttcagctac ctgaatgaag atattgattt
    18601 tgtgctgaat gagctgaaag ccaaaggcct gtgccgcgat tttctcgccc agcagaaaga
    18661 ccggggagac aggacgcatg tttgattttc cccagcccgg tgagatttac cgttctgccg
    18721 gttttcccga tgtggccgtg gtcggcattc tggaagacgg tattccgtgg gaaatgccgt
    18781 accgctgccc ggacattgtc tggaacccgt accgccgtaa attcagtatc cttgtgcgta
    18841 tcctcgccga cgggcgcacc acagacatcc cgctggggcg ttttctgcgg gaatttacct
    18901 gtgaccgtcc tgacctgttt aaacgcagcc ccgtaaaccg gcatgcggta ctgaaagaaa
    18961 tggccggaga cccggaatta cagaaatggc gggagaaata tctggatatt tacccgcagg
    19021 acactgttcc ggtcagccgg gcagcaccgg tagcgcggga atggcgggaa attccccgca
    19081 cggagcctga cccggaaatc accccggata acagttaccg caattatctg taattaaaaa
    19141 acgacacccg aaaaattaaa tgtgcgtatt cgcgcaggga tacgcacgtc ttcaggagac
    19201 gcagatatgc cttatcagtt aatgcaaccg gcacggaatg cagtcatctg tcacagggag
    19261 gaaagcaaat gaaaacaccc ttaccgcccg tcttacgcgc agccctttac cgtcgtgctg
    19321 tcgcctgtgc ctggctgacc gtgtgcgaac gtcagcaccg ctacccgcat ctcacccttg
    19381 agtcactgga ggcggccatc gccgctgagc tggaaggctt ttatctgcgc cagcacggtg
    19441 aggaaaaagg gcgtcagata gcctgtgccc tgctggaaga tttaatggaa tccggccccc
    19501 tgaaggccgc accgtcgctg tcctttctcg ggctggttgt gatggatgaa ctctgtgccc
    19561 gtcacataaa agcgccggta ctgcactgaa ggagaacaac accatgaaaa tgaacgtaac
    19621 cgccaccgtc agccatgcgc tcggccactg gccgcgtatt ctcccggcgc tggggattca
    19681 ggtgctgaag aaccatcatc agccctgtcc ggtctgtggc gggagtgacc gcttccgttt
    19741 tgatgacagg gaggggcgcg gcacctggta ctgcaatcag tgtggtgccg gtgacggcct
    19801 gaaactggtt gaaaaggtgt ttggtgtctc cccgtccgac gtggccgcaa aggtggctgc
    19861 cgtgaccggc agtctgcccc cggctgaccc ggcagtgacg gccgccgccg ttgctgaaac
    19921 agacgctgcc cggaagaacg ccgccgcact ggcacaaacc ctgatggcaa aaacccgtcc
    19981 cggaaccggt aacgcctacc tgacccgcaa gggctttccc ggccgggaat gccggatgct
    20041 gaccggcaca cacagagccg gtggcgtgag ctggcgcgcc ggtgaccttg tggtgccact
    20101 gtatgacgac agcggcgaac tggttaacct tcaattaatc agtgctgacg gccgtaagcg
    20161 caccctgaaa ggcggacagg tcaggggcac ctgtcacacc cttgaaggac agaatcaggc
    20221 cggaaaacgt ctgtggatag cggagggata cgcgaccgca cttaccgtac atcacctgac
    20281 cggtgaaacg gtgatggtgg cgctttcttc cgtgaacctc ctttctctgg ccagccttgc
    20341 ccggcagaag catccggcct gtcagattgt ccttgccgca gaccgtgacc tcagcggtga
    20401 cggccagaaa aaagccgccg cagccgcaga tgcgtgtgaa ggtgttgttg ccctgccgcc
    20461 ggtcttcggt gactggaatg atgccttcac gcagtacggc ggggaggtca cccgtaaggc
    20521 catttacgat gccatccggc caccggctga aagcccgttc gacaccatga gcgaagcaga
    20581 gttttccgcc atgagtacca gcgaaaaggc catgcgtatc tatgagcatt acggcgaggc
    20641 gctcgcggtc gatgccaacg gccagcttct gtcccgctat gaaaatggtg tctggaaggt
    20701 gctgccgcca ctggactttg cccgggatgt ggccgggctg tttcagcgtc tgcgcgcgcc
    20761 gttctcctcc gggaaggtgg cctccgtggt ggacaccctg aagctgatta ttccgcagca
    20821 ggaagccccc tcccgccgcc tgattggctt tcgtaacggt gtgctcgaca cacagaacgg
    20881 cacgttccac ccgcacagtc cgtcacactg gatgcgtacc ctgtgcgatg tggatttcac
    20941 cccaccggtg gaaggggaaa cgctggaaac ccacgccccc gcgttctggc gctggcttga
    21001 ccgtgccgcc ggtggccgtg cggaaaaacg cgacgtgatt ctggccgcac tgtttatggt
    21061 gctggcaaac cgctacgact ggcagctctt tctggaggtg accggtcccg gcggcagcgg
    21121 caaaagtatc atggccgaaa tcgccaccct gctggccggg gaggataacg ccacgtcggc
    21181 caccattgag acgctggaat ccccgcgtga acgtgccgcg ttaactggct tctcactgat
    21241 acgcctgccg gaccaggaaa aatggagcgg cgacggtgcc ggactcaagg ccatcaccgg
    21301 cggcgatgcg gtgtccgtgg acccgaaata ccgggatgcg tactccacgc atatcccggc
    21361 ggtgattctg gccgtgaaca ataacccgat gcgcttcacc gaccgcagcg gcggcgtgtc
    21421 acgccggcgg gtgattattc acttcccgga acagatagcc ccgcaggagc gcgacccgca
    21481 gcttaaggac aaaatcaccc gcgagctggc ggtcatcgtg cgtcacctga tgcagaagtt
    21541 cagcgacccg atgctcgccc ggtcactgct tcagtcccag cagaactcag acgaggcgct
    21601 gaacatcaaa cgggatgccg acccgacgtt tgattttatc ggctatctgg aaaccctgcc
    21661 gcagaccagc ggcatgtata tggggaacgc cagtatcatc ccgcgtaatt accgtaaata
    21721 cctctatcac gcctatctgg cctacatgga ggcaaacggc taccggaatg tactcagtct
    21781 gaaaatgttc gggctggggc tgccggtgat gctgaaggaa tacggactga attacgagaa
    21841 gcgccatacc aaacagggga tacagaccaa cctgacactg aaagaggaaa gctacggcga
    21901 ctggctgcca aaatgtgacg accctgcaac aacctgaccc acctgaccgg catctgccgg
    21961 tcttttttta tcccgacctc ccccgaaggt gaacaatcca ctgttcaccc ttcaccgtat
    22021 attcacccgt tatcacactg aaattaaaag agaaaaatga aaggtgaaca gtgtgaacaa
    22081 tcaaatcaaa aaaaactttt ttctccctgt gcgattttca gtacggggga ttaatcaccg
    22141 gtatgagtca caccggcaga atgccggagg tgaagaatcg aatgttcacc cttcacccat
    22201 tattcaccac ctatcactct gaaataaaag gagaaaatta aatggtgaac agtgtgaaca
    22261 gttctttcga aaaaaaattt tttatgtgga taaaagatgc actggtttgg atccgggcta
    22321 cggatccaaa cttactgatt aaaaattatt taactttccg atttattgat gggctgaaaa
    22381 tagattggtc agaaaaacag tgggggcaca aaagggggca tatttcattg ttgtgtttta
    22441 ttatttgttt tttatcatta acttattttg atatttgagt ccggccttcg caccaaaagt
    22501 atgtaaatag acctcaactg aggtcttttt ttatgcctga aatccgcgct acacaaggct
    22561 tttccagctt ttcccctcaa ctgaagtcaa cctgactcaa cccacatcaa caggcttgtg
    22621 agtatactaa tgagtatatt tgccgattcg atattgcttg tatactcacg agataccaat
    22681 ggaaggaaga ccattatggc cctaacggat actaaagttc gctctgcgaa acctgaggag
    22741 aaagagtatt cacttgttga cggcgacggc atgtccttac ttgtaaaacc tggcggttca
    22801 aagtattggc gatttcgttt ccgttttggc ggtaaacaac atttgatggc gttcggcgtt
    22861 tacccggatg tttcgctggc ggatgcgcgg aagaaaaggg aagaggccag aaagctggta
    22921 gctgctggta tcgatcctcg tgagcataag cgtgctgtga aagaagagca ggcgaaagag
    22981 attattactt tcgagaaggt tgccagagag tggctcgtaa ccaaccaaaa atggtcggaa
    23041 gagcatgcta atcgtgtaaa aaagagcctg gaggacaata tcttcccggc aattggttcc
    23101 cacaatattg ctgaactggg cacccgcgat ctgttaattc ctattaaagc cgtggagaaa
    23161 tccggacgtc ttgaagtggc ttcccgcctt caacagcgca ccacggccat catgcgttat
    23221 gcagtgcaaa gcgggttaat tgattacaat ccggcgcaag agatggcggg ggcggtagct
    23281 tccagtaatc gacagcatcg tccggcgctg gagttaaagc gtatcccgga attactccag
    23341 aaaatcgatg aatacaccgg caggccacta acccgctggg caaccgaact taccctgctt
    23401 atttttattc gatccagtga gctgcgtttt gctcgctggt cagaaatcga ttttgaaacg
    23461 tcaatgtgga ccatcccgcc tgagcgagaa cctattcccg gtgtgaaaca ttctcagcga
    23521 ggagcaaaga tgcgtacacc tcatctggtg ccgctttcaa agcaggcgct agcgatcctg
    23581 aagcagataa aacagttctg tggcgaacat gagctgattt ttattggcga tcacgatccg
    23641 agtaagccca tgagtgaaaa cacggtgaac agtgcattgc gggtgatggg ctatgacacc
    23701 aaggttgagg tttgcggcca cggcttccgc actatggcct gtagctcatt gattgagtca
    23761 gggttatggt cgaaggatgc ggtggaaagg cagatgagcc atatggaacg caattcggtg
    23821 agggcggcgt atatccataa agcggaacat ctggatgagc gcaagctgat gttgcagtgg
    23881 tgggctgatt ttctggatgc gaaccgggag aaggggatta cgccgtttga ctatgcgaag
    23941 atcaatcggg gtaatggcga gtgagttatc taaaagcgca cattcgcctc taaattgaaa
    24001 gctgctgact tattcaaacg aggaattggt cagcagtgcc aaatagccga gttttcacta
    24061 aggtaagcct ttttattgaa cctaatcggc agtaatgctc cacctaagcc taaatttaaa
    24121 gtcatgatta cttataaaag gggagtggac ccttgattga gccctacatc gtaacaaagg
    24181 tacagcaatt cggctacatc aggagtgata gtcaattagt taatctaata attaattgaa
    24241 tctaaataat taaatttctt acgtaaaatt gaccaattta ctggtggtgt aagccgcaat
    24301 atcttaatgt aatcagtata aaggggcttg atttctttta aagatagtat ccgtatgaat
    24361 tttaagaaaa aactcgaaga gcattttaag cagttcgaag catccccagt gttatttgtc
    24421 ggctccggtg tgtctcgtcg ttatcttggt gtgccatgtt ggcaagacct tttgaagcat
    24481 tttgctgagg caattgggga aaatcatata aaattaaaaa caaaatctaa tggtgactta
    24541 cccgaatatg cacaattatt ggtgtctgca tatgctgaga aatggtggga tactgaagaa
    24601 ggacaattag cattaagtga aaaagaacag gagaaaactt tcattaacga acagtctcct
    24661 ttgaagttgt caatatctaa atatattgag aatgcacata aaaatattat agataatgat
    24721 gagttaaaac atga
//
LOCUS       DAJVUY010000053        24643 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.053, whole genome shotgun sequence.
ACCESSION   DAJVUY010000053 DAJVUY010000000
VERSION     DAJVUY010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.053"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..224)
                     /locus_tag="OQQ72_001877"
     CDS             complement(<1..224)
                     /locus_tag="OQQ72_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS2011631.1"
                     /translation="MTWNLLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINIL
                     FTSRQMIIETFICPVSSISNPDEFNTFLLR"
     gene            complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ72_001878"
     CDS             complement(351..1082)
                     /gene="rlmB"
                     /locus_tag="OQQ72_001878"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCS2011632.1"
                     /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ72_001879"
     CDS             complement(1263..3704)
                     /gene="rnr"
                     /locus_tag="OQQ72_001879"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HCS2011633.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ72_001880"
     CDS             complement(3743..4168)
                     /gene="nsrR"
                     /locus_tag="OQQ72_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HCS2011634.1"
                     /translation="MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ72_001881"
     CDS             complement(4373..5671)
                     /gene="purA"
                     /locus_tag="OQQ72_001881"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCS2011635.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5775..5972)
                     /locus_tag="OQQ72_001882"
     CDS             complement(5775..5972)
                     /locus_tag="OQQ72_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HCS2011636.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ72_001883"
     CDS             complement(6054..7058)
                     /gene="hflC"
                     /locus_tag="OQQ72_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HCS2011637.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ72_001884"
     CDS             complement(7061..8320)
                     /gene="hflK"
                     /locus_tag="OQQ72_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HCS2011638.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTYPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ72_001885"
     CDS             complement(8406..9686)
                     /gene="hflX"
                     /locus_tag="OQQ72_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCS2011639.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ72_001886"
     CDS             complement(9763..10071)
                     /gene="hfq"
                     /locus_tag="OQQ72_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HCS2011640.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ72_001887"
     CDS             complement(10157..11107)
                     /gene="miaA"
                     /locus_tag="OQQ72_001887"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCS2011641.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ72_001888"
     CDS             complement(11100..12947)
                     /gene="mutL"
                     /locus_tag="OQQ72_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HCS2011642.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ72_001889"
     CDS             complement(12957..14294)
                     /gene="amiB"
                     /locus_tag="OQQ72_001889"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HCS2011643.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ72_001890"
     CDS             complement(14313..14774)
                     /gene="tsaE"
                     /locus_tag="OQQ72_001890"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HCS2011644.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ72_001891"
     CDS             complement(14746..16293)
                     /gene="nnr"
                     /locus_tag="OQQ72_001891"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HCS2011645.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASGGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16292..17431
                     /gene="queG"
                     /locus_tag="OQQ72_001892"
     CDS             16292..17431
                     /gene="queG"
                     /locus_tag="OQQ72_001892"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HCS2011646.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQPICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17414..17467)
                     /locus_tag="OQQ72_001893"
     CDS             complement(17414..17467)
                     /locus_tag="OQQ72_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011647.1"
                     /translation="MRFYFYSQAVDESGVTR"
     gene            complement(17696..17771)
                     /locus_tag="OQQ72_001894"
     tRNA            complement(17696..17771)
                     /locus_tag="OQQ72_001894"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17736..17738),aa:Gly,seq:gcc)
     gene            complement(17808..17883)
                     /locus_tag="OQQ72_001895"
     tRNA            complement(17808..17883)
                     /locus_tag="OQQ72_001895"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17848..17850),aa:Gly,seq:gcc)
     gene            complement(18094..18639)
                     /gene="orn"
                     /locus_tag="OQQ72_001896"
     CDS             complement(18094..18639)
                     /gene="orn"
                     /locus_tag="OQQ72_001896"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HCS2011648.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDSFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            18734..19786
                     /gene="rsgA"
                     /locus_tag="OQQ72_001897"
     CDS             18734..19786
                     /gene="rsgA"
                     /locus_tag="OQQ72_001897"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HCS2011649.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNELLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            19883..20851
                     /gene="psd"
                     /locus_tag="OQQ72_001898"
     CDS             19883..20851
                     /gene="psd"
                     /locus_tag="OQQ72_001898"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HCS2011650.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            20873..24196
                     /gene="mscM"
                     /locus_tag="OQQ72_001899"
     CDS             20873..24196
                     /gene="mscM"
                     /locus_tag="OQQ72_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HCS2011651.1"
                     /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(24347..>24643)
                     /locus_tag="OQQ72_001900"
     CDS             complement(24347..>24643)
                     /locus_tag="OQQ72_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2011652.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEAGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPELALD"
BASE COUNT         5676 a         6881 c         6262 g         5824 t
ORIGIN      
        1 tttcttaata agaaggtatt aaattcatct ggattgctga tactacttac cggacaaata
       61 aaggtttcga taatcatttg gcgggaagta aaaagaatat tgatttgcaa atcgccataa
      121 tcattcattt taataattaa tgcgttctcg ctatttgtta catcaatatt ttgttcaggt
      181 acagtttgca gcgccgtcgc cagcgccaac agattccatg tcatatatta ttccatatag
      241 atttagttta aatattaata aaatgaatat ttgcagtacg taattatctt accagctata
      301 gacaaaaaaa aaccatccaa atctggatgg cttttcataa ttcagaggaa ctagctgcgc
      361 tgacgcaccg cttcaaataa gcaaattccg gttgcaaccg aaacgttcag agaagaaaca
      421 cttcctgcca ttgggatgct gatcaactca tcgcaatgtt cacgggtcag gcgacgcata
      481 ccttcacctt ccgcgcccat caccagcgcc aggcgtccgg tcattttgct ctgatagagt
      541 gtatgatccg cctcacctgc cgtaccgacg atccagatat tctcttcctg caacatacgc
      601 atggtacgca ccaggttagt cacccgaatc agcggaacgc tttctgccgc gccacaggcc
      661 acttttttcg ccgtggcgtt gagctgggcg gagcgatctt tcggcacaat caccgcatga
      721 acaccagcgg catctgcgct acgcaggcac gcgccgaggt tatgcggatc ggttacaccg
      781 tcaaggatca gcaggaacgg ctgatcgagc gaagcgatca gatccggcaa atcattttcc
      841 tggtactgac gtcctggctt cacgcgggcg ataatgccct gatgcacggc accgtcgctt
      901 ttctcgtcga gatattggcg gtttgccagc tggataacca cgccctgggc ttcgagggcg
      961 tgaatcagcg gtaacagacg tttatcttca cggcctttta aaataaagac ttcctgaaaa
     1021 cgttcagggg cgcgctccag cagggcctgc actgcgtgga tgccgtaaat catttcgctc
     1081 attaatgtac tcgttgttta cgttttgcct gatgcactac gtttatccgg cctacatgat
     1141 ctctgcaata tattgaattt gcgtgattat gtaggccgga taaggcgttc acgccgcatc
     1201 cggcatgaac aaagcgcatt ttgtcagcaa tctaaccctc ttctgtttga agagggtaat
     1261 gatcactctg ccactttttt cttcgccgca cgcttcgctt tggtcgctgc agctattttc
     1321 tgcgttttcg ccgatggctt tttcgctttt ctcgcgtctt tcttcgctgc tttcggcttc
     1381 gtttttttct caccgcggaa ggcgctgtct ggctcaaagt ttaccttttt accgaccaga
     1441 cgacgcttgc cgcctttttt acctgcatcg ccttttttcg ctttctcgcg cgccgtttta
     1501 ccgacgttgc gcggtgcgcg ttcgctggag atcaggctaa agtcgatttt gcgctcgtcc
     1561 atattaaccg cttcgacgcg aacttccacg cgatcgccca gacgataagt ctggccgctg
     1621 gattcaccca tcagccgttg ccctacctgg tcaaagcgat agtagtcatt gtccagcgaa
     1681 gagacatgga ccagaccatc aatgaataag tcgtccagac ggacaaagaa tccaaagcca
     1741 gtgacgctgg aaattacgcc tttaaagacg ttacctacct ggtcgagcat gaagtcacac
     1801 ttcagccagt cagccacatc gcgcgttgct tcgtcggcac gacgttccgc catcgaacag
     1861 tgctgaccca gttgcagcat ttcttccatc gaataatggt agccgccggt ttcagtggtg
     1921 ttgccctgat gcccctgctc tttcgccagc agatatttaa tggcgcggtg cagcgtcagg
     1981 tctggataac gacgaatcgg cgaagtaaag tgcgcatagg actgcaatgc caggccaaag
     2041 tgaccacggt tttctggatc gtaaatcgcc tgtttcatcg agcgcagcag catggtttgc
     2101 agcatttctg catcaggacg atcggcaacc gactccagca gctccgcgta gtcacgcggt
     2161 tccggcttgt taccgcccgg cagttccagc cccagctccg ccagtactga acggaaagag
     2221 gtaatcgctt cggtgctcgg cttgtcgtga atacggaaca atgctggttc tttggctttc
     2281 tcaacgaaac gcgccgccga gatattcgcc agaatcatgc actcttcaat taacttgtgt
     2341 gcgtcgttac gctgagtctg ttcgatacgc tcaatacggc attcagcgtt gaaaataaac
     2401 ttcgcttctt cgctctcaaa tgagatcccg ccacgttctt cacgggcttt atccagcact
     2461 ttatagaggt tatgcaactc ttcgagatgc ttaaccagcg gagcgtactg ctcgcgcaga
     2521 tcctgatcgc cctgcagaat atgccagact ttggtgtagg tcagacgcgc gtgagagctc
     2581 atcaccgctt cgtagaattt gtagcccgtc aggcggcctt tcgacgaaac cgtcatctcg
     2641 cacaccatac acaggcggtc tacctgcgga ttgagcgagc acagaccgtt agagagcact
     2701 tccggcagca tagggataac ctgcgaaggg aagtacaccg acgtaccacg attacgcgct
     2761 tctctatcca gcggcgttgg cggacgcaca tagtagctga cgtcggcaat cgcgacccat
     2821 aaacgccagc cgccgccgcg ttttttctcg cagtaaaccg catcgtcaaa gtcacgggcg
     2881 tcttcgccat caatggtgac cagcggtaaa tcgcgcaaat cgacacggcc cgcttttgct
     2941 tcttccggca cttcttcttt cagcccggca acctgttgct caacagcctg cggccagatg
     3001 tacggaattt catgggtacg caaagcgata tcaaccgcca tgccggtgcc catattgtcg
     3061 cccagcactt cgacgatttt acccaccgct ttggtacggc gagtcgggcg ttgggtcagt
     3121 tcaacaacca ccacaaagcc catccgcgcg cccatgatct gatcgggcgg gattaagata
     3181 tcgaagctca gacggctatc gtcaggaacc acaaagccga cgcccgcttc ggtaaagtag
     3241 cgaccaacaa tctggctggt ttttggcacc agtacgcgga caatacgcgc ttcacgacga
     3301 cctttacggt cagcacccag cggctgagcc agcacctgat cgccatgaat gcaggttttc
     3361 atctgctcgc tggagagata caaatcatct ttacgccctt caacccgcag aaagccgtag
     3421 ccatcacggt ggccaataac ggtacctttc accaggtcga ggcgttccgg cagcgcatag
     3481 cactgacgac gagtgaagac cagttgacca tcgcgctcca tcgcgcgcag gcggcgacgc
     3541 aggccttcaa gctgctcttc gccttcaatg tgcagttcta ccgccagctc atcacggctg
     3601 gccggttttt cacgtttggt taaatgttcg aggataaatt cccgactagg gatgggattc
     3661 gcgtattttt cagcttcgcg ttcctggaaa ggatcttgtg acatctcggt tcctccgttg
     3721 tcatctctga tgaagatttt cgtcactcca ccagcaataa tttataaagc ggttgattct
     3781 cttcaaccaa atcggcaagc gtgtagttat ccagttccgt aagaaaactt tgcacggcct
     3841 tagaaagcgc ctgtttcaac cgacaggcag gtgtaatgtg gcaaaactca ctgctgcaat
     3901 tcaccagcga taagggctcc agctcgcgca ccacatcacc aatacgtatc gcactcgccg
     3961 gtttacccag gcgaatgccg ccattttttc cacgaacagc agtcacgtag ccggcacgac
     4021 taagttgatt gattattttg accatatgat tacgggagac gccgtagacg tcagtcactt
     4081 cagaaatact ggtcatccgc ccttctggca atgacgccat gtagatcagc gcacgtaatc
     4141 cgtaatcagt gaaactcgtt aactgcacat caacctcaaa agggaaatcg ggaaaaaata
     4201 catttatatt gatgataaac cagccacaag ctgtgtcgct aatttatttc agttcgggga
     4261 aggaaaaaag cgaggattta acactgtgtc ggatagcgta atggcttaac cgacacagca
     4321 atgtatcaca ctgttagccc ggcaggcaaa atatctgcca ggcgtaccag aattacgcgt
     4381 cgaacgggtc gcgcagaatc atagtttcag tacgatccgg accggtagag atgatatcga
     4441 tcggcacacc ggtcagctct tcaatacgct tgatgtagtt cagcgccgcc tgcggcagcc
     4501 cgctacgatc tttcacgccg aaagtggatt cagaccagcc cggcatggtt tcgtaaatcg
     4561 gctctacacc tttccagtcg tcagctgcca gcggagtggt agtcacttcg cgaccatccg
     4621 gcatacggta agccacgcag agtttaacct ctttcaggcc atccagaacg tccagtttag
     4681 tcaggcagaa gccagacagg gagttcagct gtaccgcacg acgaacggca acggtgtcca
     4741 gccagccggt acgacgacga cgacccgtcg ttgcgccgaa ttcgttaccc tgcttgcaga
     4801 ggaactcgcc agtttcatca aacagttcgg tcgggaaagg acctgcaccc acacgagtgg
     4861 agtaagcttt gaggataccc agaacgtaat caacataacg cgggcccagg ccggaaccgg
     4921 tcgccacgcc accagcagtg gtgttggaag aagttacgta cggataagta ccgtggtcga
     4981 tatccagcag cgtaccctgc gcaccttcaa acatgacgaa atcgccacgc tgacgcgcct
     5041 ggtcgagcag gtcagaaacg tcaaccacca tagaagtcag gatgtcggca acagccatcg
     5101 tatcatccag aactttctgg taatcaaccg cttcagcttt gtagtagtta accaactgga
     5161 agttgtgata ttccatcact tctttcagtt tttcagcgaa ggtttctttg tcgaaaaggt
     5221 cgccaacacg cagaccgcga cgtgccactt tatcttcata agcaggcccg ataccacgac
     5281 cggtggtgcc gatcgctttc gcgccacgcg ctttctcacg cgcgttatcc agcgcaacgt
     5341 gataatcaag gatcagcgga catgcttcag acagcagcag acgctcacga acggggatgc
     5401 cacggtcttc cagttctttc atctctttca tcagcgcggc cggagacagc acaacaccgt
     5461 taccgatgat gctggttaca ttctcgcgga gaatacctga tggaataaga tggagaacgg
     5521 ttttttcacc gttgattacg agagtatggc ctgcgttgtg accgccctgg tagcgtacaa
     5581 catatttagc ccgttcagtc agaagatcga cgatcttacc tttaccttcg tcaccccatt
     5641 gggtgcccag tacgacgacg ttgttaccca tttttcaaaa tcaccgtttg cttaaaaatg
     5701 gattctacca tcgctttttc agagttacag cactttttgc actcaaaaat gacctcgatc
     5761 agtctgtttt ttgttcagcc aatcgttttc ctcaacatgt agtagaccac aacgcccgca
     5821 accacaagtc caccgccaaa acgacgtaaa atattatcgg gcaaattggt catcgcagag
     5881 atcatcttct tccatgcctt cgggtaaagc atcggcccta aaccttccag taccaaaacc
     5941 agggcaagcg ccagccagat tgtcgaattc attcattatc cttatagaaa aagaaaacca
     6001 ccgacatccc tgaggatgcg gtggctttat tgacctgtac cgcagtcgtt atattaacgc
     6061 gttgcggaag tcggcgtctt catgtagcgg aagaaatcgc tatccgggct catgaccatc
     6121 acgtcctgat tgccagagaa gctgttctca taagcacgca ggctacggat gaatgcgtag
     6181 aagtccggat ctttactgaa tgcatcagca aacagtttgg ctgcttcggc atcgccttca
     6241 ccacgcatga tgcggccctg acgctcagct tctgccagcg ttctggtcac ttcatagtcg
     6301 gcagtcgcgc gcagtttttc cgcttcttcc tgaccttgtg aacggtgacg acgcgctacc
     6361 gcttcacgct cggcgcgcat acggttgtag atcgcttcag acacttcggt cggcaggttg
     6421 atctgcttga tacgcacatc gacaacttca atacccagcg ccgccatact gttcgggttg
     6481 atgaccggaa ctttgccctt cgtctcagcc gttacgcgct ctgccgcttc ggcaatggcg
     6541 ttatctgctg ccggggtagt aacttcatct tctgtacccg cagaaccgga gttcagcgcg
     6601 tcacgtactt cgagggtcag acgaccacgg gaatcagtga cgatatcttt cacgtccagg
     6661 cgaccaattt cagaacgcag acggtcagag aacttacgtt tcaacagcac ttccgcttgc
     6721 gaaatgtcgc caccacccgt tgccaggtag taacggctga aatcgctgat gcgccatttg
     6781 atgtaagagt cgacgatcag gtctttcttc tctttggtca caaagcggtc ggcctggttg
     6841 tccatggtct gaatacgtgc gtcgagcatt ttcaccgttt caatgaacgg tatcttgaaa
     6901 tgcagacccg gctcataaac cagaggtttg ttgtcatcgt cacgcagtac cttaccaaaa
     6961 cgcagcgtaa taccgcgctc accttctttg acgacaaaga cagacatgta aagcactacc
     7021 agcacgatga tgataatcgc gataactgac ttacgcatcg ttattccccc tgacgctggt
     7081 agtcgttacg ctgcgcgttg gcgcggcgtt ggtccataat atcgccctga ctggtggacg
     7141 acgtgttgct tgctccactg gttgtggagg aagaggctgg cggcaaacgc agcagattgc
     7201 tggcaccgtt atcgctcttc gccgcagggg cgttaccacc tttcagcatc tggtctaacg
     7261 gcagaaccat caggttgcca cctttatcgt taaccagcac tttgcgggtg ttacccaaca
     7321 ctttttccat cgtctcgata tacagacgct cgcgagtaat ttccggcgcg gctttatatt
     7381 ccggcagaag tttagcaaag cgcgccactt caccctgagc ttccaggatg gtctgggcct
     7441 tgtacgcacg cgcctcttcg aggatacgtt gcgcctgacc gttcgcacgc ggctgaactt
     7501 cgttggtata cgcttctgct tcacgaatgt attgctgttc gttttcacgc gcggcaatcg
     7561 catcgtcaaa cgccgctttt acttcttccg gcggacgagc agcctggaag ttgacgtcca
     7621 gcagagtgat gcccatgtca tacggacgaa tcgtctcttc cagttcgcgc tgggtatcgc
     7681 tacgaatcac ggtacgacct tccgtcagaa tgcggtccat ggtgtattta ccgataaccc
     7741 cgcgcagggc gctgtcggta gcctgacgca ggctgtcatc cgggctggtc acgctataca
     7801 gatatttttc cggataggta acgcggtact gcacgttcat ctcaacgcgc actacgttct
     7861 cgtccgacgt cagcatcaca ccggaagcgg ccagttcacg cacggcttcc acgtttaccg
     7921 gtttgacttc gtcgataaac gtcggtttcc agttcagacc cggctcaacc agatggctga
     7981 atttaccaaa gcgtgttacc acgccgcgtt cggcttcttt aatggtatag aaaccactgg
     8041 ccgcccagat aatgacaatc gctgccgctg cgatggtaac gacacgaccg ccaagctgcg
     8101 ggcgcgggcc ttgcgatgaa ctgccaccgc cagatccggt gcctttaccg ccgcccagac
     8161 caccgagctt tttgctcagt ttgcggaaga tatcatctaa atcaggtggc ccttgatcgc
     8221 gaccgccttt gtttccattt ccctcagagt tgccgccagg tttgctgctt ccccacgggt
     8281 cgcggtcttg tccgttatta ccgggctgat tccacgccat gtttgtgctc catatttgtt
     8341 atgcggtgat ccctgttgtc tttcgacgcc agaggatatg actccacgct tcagacgcta
     8401 cgccgttaga tcaggtaatc gatcaacgcc ggttcttgtt tacagaggcg acgccagtca
     8461 acgatcggca tacgaacttg cagacttacg ctgccgtcct cctccatcca ctctttttct
     8521 attgcctgaa gctgataaaa acgacttctc agacgccctt cctgcggtgg cagacgcaat
     8581 gtatgctgcg ccacctcgcc ggaaagccgc tccgtcaaag cctgaaaaag ctgtggtatc
     8641 cccgctccgg tctgtgcgga aagccagaca cggatcggtt tgttctcttc gtcccgatca
     8701 atacgcggtt cgaaatcttc cagcatatcg atcttgttca tcaccagcag ggttgggatc
     8761 tcgtgagcgt cgatctcttc aagaaccgta ttcaccgctt cgatgttttc ttgtacacgc
     8821 acatccgccg catcaatgac gtgcagcagt aatgtggctt gccgcgtctc ttgtaacgtg
     8881 gctttaaatg ccgccaccag atcgtgcggc agatggcgaa taaaccctac ggtatctgca
     8941 agtacggttt caccgacatc cgcgacgtca atacgccgca acgtcgggtc gagggtggca
     9001 aacaactggt ctgccgcgta gacccgcgct tcggtgatgc gattgaaaag ggtagattta
     9061 ccggcgttgg tatatcccac cagcgaaaca gtaggaacgt cggctttgat acgcgattgc
     9121 cgcccctgct cacgctgctt ttcaactctt tccaggcgcg actgtatctg cacgatgcga
     9181 ttacgcaaca aacgacggtc ggtttcgagc tgggtttcac ccggaccacg caaacctatc
     9241 ccgcctttct gtctttcaag gtgggtccag ccacgcacca ggcgcgtagc cagatggcgc
     9301 agctgcgcca gctcaacctg caacttaccc tcatgggtac gcgcacgttg ggcgaaaata
     9361 tctaaaataa ggccggtgcg gtcgatgaca cgacactcgc acaaacgctc caggttacgc
     9421 tcttgcgccg ggctcagggc atggtcaaaa agaacgaccg aagcacccgt cgctttgaca
     9481 gcttccgcaa tttcaactgc tttaccttca cctacaaaat actttgggtg cggcgcttta
     9541 cggctaccgg taatcacctg caatgcttcg acaccggcgg aagaaaccag agattcaaac
     9601 tcctggaggt cttccatatc tttgtctttc gtaaaataga tgtgtaccag taccgcctgc
     9661 tcaccagcat cataacggtc aaacaagcgt ataaccctct aaatagatca gcggggaacg
     9721 caggatcgct ggctccccgt gtaaaaaaaa cagcccgaaa ccttattcgg tttcttcgct
     9781 gtcctgttgc gcggaagtat tctgcgcgct gctaccatga tggtagttac tgctggtacc
     9841 gccaccggcg ttgttactgt gatgagaaac cggacgagac gggacaacag tagaaatcgc
     9901 gtgcttgtaa accatctggc tgaccgtgtt tttcaacagg atcacgaact gatcaaaaga
     9961 ctcgatttgc ccttgcagct taataccatt caccaaataa atagaaactg gaacacgttc
    10021 ccgacgcagt gcgttcagga acggatcttg taaagattgc cccttagcca ttctctcttt
    10081 tccttatatg cttatttgta ctttgaacct ttcgattctg aaaaaattgc gcacgatacg
    10141 tctcaattgt acacattcag cctgcgatag caccaacaac ctgtaatact tcgtcacgcg
    10201 cctgttctgg tttttcactg tcaagccagt gaaccccttc ccaaccacgc agccaggtta
    10261 tctgccgctt cgccaactgt ctcgtggcgc aaacacctcg ataaaccatt tcatcgtatg
    10321 agatttcgcc ttcaaggtaa gaccacatct ggcgataacc cacgcaacga atggaaggca
    10381 agtccgtatg caaatctcct cgggcaaaaa gcgcccggac ttctgcttca aaacctgaag
    10441 ccaacatctg atgaaaacgc tgctcaatgc gttgatggag cagttcacgg ctcgccgggg
    10501 cgatggcgaa ctgatgcacc tgatacggta gagcgtctcc tgacgtttgc gtcagttccg
    10561 ttaaagtttt acccgaaatg aaaaaaactt ccagtgcccg ggaaagcctt tgtggatcat
    10621 ttggatgaat ccttgctgcc gcaaccggat ctacctcctg aagttgacga tgcaatgact
    10681 cccaaccttg ctctgccgcc tgttgctcaa ttctggcccg cacttccggg tctgccgacg
    10741 gtagcggcga caacccttcc agcaatgcct tgaaatacaa catcgtaccg cccactaaca
    10801 gtgggatccg ccccgccgcg gtgatatcgg ccatttccgc cagcgcatcg cggcgaaaat
    10861 cagcagccga gtaagcctgc gacggatcgc gaatatccag caatcggtgc ggcgcggcga
    10921 gtaactcttc agcgttcggc ttcgccgtcc cgatatccat ccctttgtaa ataagggcag
    10981 aatcaacgct tatcaactct actggtaaaa ttttacgcag ctcaatggct aacgccgttt
    11041 taccggaggc cgtcggcccc atcaaaaaaa tcgccttagg caggctcgcc ttactgatat
    11101 cactcatctt tcagggcttt tatcgccgga tgtaaatcaa cagattgtaa cagaccaccc
    11161 ggcggcgttt tcacaagttg cggacataac cgttccacgt ccgccagcag ggttatggcc
    11221 tgtgccattg accactgcgc atgttcgctc atcagatttc gtgcaatcca ctgcgcaata
    11281 ttgccaggtt cgaatacgga ctgcttcgcc aggtagccta tcagttcagg aatcaagatt
    11341 tgtaaatttt gttggcgtaa gggtaaaggc acggccctga tggtcacatg ctgtgcatct
    11401 gactggaaat caatacccaa ttccgccagg gcagactgcg ctttttctaa tgccgatttt
    11461 tcttcgccag aaacttttag ccgcaacgga ataagcagcg gctgagcgca aactggcgct
    11521 tcacccgggg tcagttgtac ctgacgcagc caacgttctg ccactggcaa ggctaaaagt
    11581 gaaatgttgc cgtcgcgctc cagcaacgca cagtcggaat ggacgatagt cagtacccga
    11641 ccaaaactct gactgttcgc cgcaagtgca ggttcctgcg gttccggcgc ttttaatttt
    11701 tgcatcggcg cgggcgtttg caaaagctgg cgatacactt caccttgctg tttctggtag
    11761 cctggctgcg cattcggcca aggggcagcc ggacgactgc ctgatgctgg cgcaggagtg
    11821 tagcgcggag ctaccggctc acgagctgcc ggttctgcaa agtgattgcg ccccgccgcc
    11881 acgcggtttt ccggaatgga acgcggtgca ggttggggtt catcgtccag cggtagcggc
    11941 gtttccagtt gctgttgtag cacgctcagc acgccctgat agataaaatc atgcaccaga
    12001 cgcgactgat ggaaacgcac ttcgtgtttg gcggggtgca cgttgacgtc cacctgatgc
    12061 ggatcgatct ccagatacag cacaaatgcc ggttgctgat cggcccccag tttgtcttcg
    12121 caggcctggc ggatcgcgtg attgatcagg cgatcgcgca tcatgcgacc gttcacgtag
    12181 caatactgaa tttctgccag tgcgggcgtg gtgtgatttg gatcggccac ccagccgcgt
    12241 agcgtgagat cgccgtgttg ccattcaatc gccagcgctt gttcaagaaa agcggtgccg
    12301 caaatcgcgc ctaagcgccg ttctttttgc ccgccttccg gcactgcgcg gtactgacgc
    12361 acaattttac cgttatgcga caggttgatc gtgacgtcga aacgcgccag cgcaatgcgg
    12421 cggatgatct catcaatgtg gttaaattcg gttttctcgg tgcgcaggaa tttgcgccgc
    12481 gccggggtgt tgtagaacag atccagcacc tccagcgtcg tccccacagg atgcgccgcc
    12541 ggttttaccg tcacgttcat atcgcgccct tcggcatagg cctgccaggc ttcctgctgt
    12601 tctgcggtgc gtgaagtgag cgtcaggcgg gaaaccgaac tgatactcgc cagcgcctca
    12661 ccgcgaaagc ccaggctgat aatggcttcg agatcgtcca gagaggcgat tttactggtg
    12721 gcatgacgag ccagcgccag cgccagctca tcttttttga taccgcagcc gttatcacga
    12781 atgcggataa gtttcgcccc accgcgttcg atatcaatat cgatacgcgt cgcacctgca
    12841 tcgaggctgt tttccaccag ttctttgact accgacgcag gtcgctcgac cacctcacct
    12901 gcggcaatct ggttcgccag ttgtggcggt aagacctgaa ttggcatcaa tcgtccttag
    12961 tttggcagcg tgcgatctgg cgtcgtcacc gtactggccg tttgtgccgt tgcaccctgc
    13021 ggcgcagatt gcatcggatg cgcaaggaaa taattgcgca ggcctttgta aatggcttct
    13081 gccagctgtt gttggtaatc gtcgctcgcc agcaaacgtt cttcgctgtt gttgctgata
    13141 aaaccggttt cgaccagtac tgacgggata tccggcgaac gcagaacgcc gagactcgcg
    13201 tgttctggtc ggcgtttatg tatttcgcca atgcgttgca actgactgat catactggtc
    13261 gctacatcat accctacccg ctgggaatga ccgaactgta aatccagcac cgcctggctt
    13321 aaatagggat cagactgact gttcgccagc acatcgcccg ccccacccag cagctccgaa
    13381 tgtttctcgt gctgctccag ccagctggcc atttcgctgt tggcgcgacg gttagagagc
    13441 acccatacgg aagcgccagt cgcactgcgg ttcggtgcgg catcagcgtg aatcgacacg
    13501 aggaaattag cgttttgctt acgtgccaca tcgctgcgcc ccatcaccga aataaagtaa
    13561 tccccgtcac gggttaaaac gcctttaaac atcggatcgt cattgagcaa agtacgcaat
    13621 ttacgcgcga tggcgatggt gacatttttc tcccgcgtac caccggggcc gatagcgcca
    13681 gggtcctgac cgccgtgtcc ggcatcaata gcgatgataa ttttatcgcc agtgttagcc
    13741 gtcgcgcgcg ctgccggacg cgttaccgta ttactgctga taacacccgt agtgcggtta
    13801 ctttccgttt taaacggatt gcgcgccggt tcgctgacgc gcggtgcgac aaccgcaggc
    13861 gtttcaacgc gtttcgcaac cacgggcggc ggaggaggcg gtggcggcac atcggcgtta
    13921 atcgtaaaga cgacagtgta attgctgcca ttctgccgct tcaccgcttc ggttttacca
    13981 ttttcggtaa gatcgaccac cagccgtagc gtttgtgcat ctttaggcgt tccagagcga
    14041 atcgccttca ccagattatt gccgctgaac aacaacggca gtccctgaat cacgcccgtt
    14101 tgtttgatat cgagcgccac ggtgcgtttg ctttgatggc taaacgcata atcaggatcg
    14161 ccaataaaac tcaacgttat ccgcgcctgt tgattaccgt tagaaacctg aatatcagag
    14221 agcgtcgcgg cacccaccgg cgtgcacagc agcagcagcg tcgctaccaa ccaatttctg
    14281 atgcgataca tcatcccgcc acctttcaaa ggttaaccgg ctaaacgcgc cagcaacaat
    14341 tcacccgcag aggaaaccgc actcacgcgc gcctcacggc cttgtgcctg ataatcaatg
    14401 tgtatttcga catccgggtc aggaagaaca cctgtacctt gttgtggcca ctccaccagg
    14461 cagatggcat cgttggcaaa ataatcgcgg atccccataa actccagctc ctcgggatcg
    14521 gcaaggcggt acaaatcaaa gtgataaacc attaaattgt cgagcgtata gggttcgacc
    14581 agcgtataag tggggctttt gacattaccc tgatgaccca gagcttgtaa aaagccccgg
    14641 ctaaaggtgg tcttacctgc gcctaaatcg ccatacagat agattacggt tgcgccatcg
    14701 caggctttcg ctacccgctc gcccaggtct aatgttgcct gctcatcagg gagcggaatt
    14761 actcgattca tcatggtttt tatcagtcac ttccgggtta acaatacgct gtagcgtgga
    14821 aaagagatcg gttgccagca tcccgcgcgt tccaaaacgc gccgccagta cgtcagctgc
    14881 cgcaccgtgc gcgacacagc ccgcacaggc ggcatcatac ggcgacagtt tttgcccaag
    14941 caatgcgcca ataataccag agagcacatc gcccatgccg ccgctcgcca tgcctgcatt
    15001 tccggcatca ataatgccta aagcgtcagg atgggcggcg accacggttc cggcaccttt
    15061 cagcaccgct acgccgccat aacgttgtac cagacgtttg gcgcaatgta agcggtcact
    15121 ttcaatttca gcgacggaac agcctaacaa ccgtgcggcc tcgccaggat gcggcgtgat
    15181 cacgcgattg tgacgcttat cgggattgat tgccagcagg ttcaatgcat cggcatccca
    15241 caacatcggt ttgcgaaaat tctcaacttt ttgcagtgct tttttccccc actcttgctg
    15301 gcccagaccg ggaccaatca ccaccacatc ggcccattcc aggctttcgg taagagagtc
    15361 catcgtcagt tcatgcacca tcaattccgg tcgtgcagtc agcagcggcg caatgttttc
    15421 actgcgggtc agtactcgga ctaaaccagc accagcacgc agcgccgctt cccccgtcat
    15481 acgaatagcc cccgccgtgc cgtgatcgcc accgataatt accagccgcc cgtgatcgcc
    15541 tttatgcgaa gtcgggcgac gcggttttag ccagtgagaa agttgttctg ctgaaaaccg
    15601 ctgaattttc gtctcctgac ctgccagcca actatccagc cccagtgagt caaaatgcag
    15661 ttgtccggta acatcccgcg cttttccagt gagcaagcct ggtttcagcg caataaaagt
    15721 gatggtgtga tcggcgttga tcaccgcgcc tggcgtagcg ccagtttcag ccagcaggcc
    15781 ggaagggata tcaaccgcca caatcggcgc aggatgggaa ttagcgtggt cgattaactg
    15841 gctaatggat tcgcggggcg cttgccgcaa accggtaccg agcagcgcat caacaatcag
    15901 atctaccgat tcgggccaga caatattcga agcatggatc tcgccacccg cgtttaacca
    15961 tgcttcgcgt gccagcgcgg cctcttccgg caacggtttg tcgctctcct gggcaaacaa
    16021 cgtgacctca atgccgaccg ctttggccag tcgcgcgacc acgtagccat cgccgccgtt
    16081 attaccatga ccgcacagca ccagccagtg gcgggcgtca ggatacgccg aacgacacac
    16141 ctggaatgcg gcctcgccag cgcgaagcat cagctcatag agtgtgagcc ccagcacatc
    16201 tgccgcctcg cgttctccgc ggcggatatc gtcggcgtac cagacggtgt gtggtatact
    16261 tacggggttt ttcttcattg tatggtccgt catgtcagag cccctcgatc tcaatcagtt
    16321 agcgcaaaaa attaaacagt gggggctgga actgggcttt cagcaggtag gtattaccga
    16381 taccgatctc agcgagtccg agcccaaact gcaagcatgg ctggacaaac aataccacgg
    16441 cgaaatggac tggatggcac gtcacggtat gctgcgcgct cgccctcatg agttattgcc
    16501 cggtacgctg cgcgtgatca gcgtgcggat gaattacctt cctgctaacg ccgcatttgc
    16561 cagcacgctg aaaaacccca aactcggcta tgttagccgt tatgcgctgg gccgtgacta
    16621 tcacaaactt ctgcgcaacc gactcaaaaa gctgggcgag atgattcagc aacattgtgt
    16681 ttcgctgaat tttagaccgt ttgtcgattc tgcgcctatt ctcgagcgcc cgttagctga
    16741 aaaagctggg ctcggctgga caggtaagca ctcacttatc ctcaatcgcg aggccggttc
    16801 gttcttcttt ttaggcgaat tgctggtcga tattccgctg cccgtggatc aaccagtcga
    16861 ggaaggatgc ggtaaatgcg tggcctgtat gacgatttgc ccgaccggtg ccatcgtcga
    16921 gccatatacc gtcgatgctc gccgctgtat ctcttatctc accatcgaac ttgaaggggc
    16981 gatcccggaa gagttgcgac cgttaatggg aaaccgtatt tacggttgcg atgactgcca
    17041 gcctatctgc ccgtggaatc gctattcaca actcaccaca gaagaggatt tcagcccgcg
    17101 taagccgcta cacgcaccgg aactcattga gttattcgcc tggagcgaag agaagttttt
    17161 aaaagtcacg gaaggatcgg cgattcgtcg aattggtcac ctgcgttggc tgcgtaatat
    17221 cgccgtagca ttaggcaatg ccccttggga tgaaacgatt ttgacagcgc tggaaagtcg
    17281 taaaggtgag cacccacttc tcgatgagca catagcgtgg gcgattgcgc agcaaataga
    17341 gagacgaaat gcgtgcatag tcgaagtgca attgccgaaa aaacagcgtc tggttcgggt
    17401 gattgaaaaa gggttaccgc gtgacgcctg attcatccac agcttgtgaa taaaaataaa
    17461 aacgcattgc aattcaagac gaataaaatc gtcaagtgat cgactcgaca aaacggaatc
    17521 ttaattttta acttatctat caataggtta aaaaaatact attcaccgtg cgaagtttct
    17581 ttgaaattaa gattacagcc tgaggctgtg gataactctg tttacaagag tttgtcagag
    17641 acaacgaaaa ccagcaataa cgcatcgctg tggatatttt attgagagaa gaatttggag
    17701 cgggaaacga gactcgaact cgcgaccccg accttggcaa ggtcgtgctc taccaactga
    17761 gctattcccg cttgggtggt ctgtgcctta cagcactttt caaattttgg agcgggaaac
    17821 gagactcgaa ctcgcgaccc cgaccttggc aaggtcgtgc tctaccaact gagctattcc
    17881 cgcgtactac ttaattttgc tttcgtaatt ttcgcatttc tgcgtcgtta cgggaggcgt
    17941 attatacgag aaatctttcc ctctgcaacc ccccaaaaaa gttttttttg cgtttttatc
    18001 tcaagtgctg aaattatcag caagacgttc aatttagcgt caaaatcacg ccgccgcaag
    18061 tggattccgg cgcttacgtg accaggaaaa attttacagc ttgataaaat gctcgcggta
    18121 gtaagccagc tccgccaccg attcacggat atcatccatc gcctgatgcg tcccctgctt
    18181 ggtaaaacta tccagaattt ccggcttcca gcggcgcgcc agctctttca gggtgctgac
    18241 atcgagataa cggtagtgga agtaggcttc cagctccggc atgtatttaa acaggaaacg
    18301 acggtcctgt ccgatgctgt taccgcaaat cggcgatttt cccgcaggca cccactgttt
    18361 taagaattcg agcgttgcca gttcagcttc ccgatcgccc atcgtgctcg ctttcacgcg
    18421 ctctaccagc ccgctggcgg tatgggtgcg cacgttccag tcatccatca gcgccagctg
    18481 ttcatcggac tgatgtactg caatggtcgg cccttctgcc agaatattca ggttggcatc
    18541 ggtcaccagc gtggcaatct caataatgcg atcgcgctcg ggatccagac cagtcatctc
    18601 aagatcgatc caaatcaggt tgttttcatt ggcactcatg ctattttcca cccattcaca
    18661 gtgactatat tgatccacaa ttgcgtgtat catagatgtt ttgcccatca ggggcgacca
    18721 ggagtctgta cgattgagta aaaataaact ctccaaaggc cagcagcgcc gcgtgaacgc
    18781 caatcaccag cgtcgtctta aaacgtctaa ggagaagccc gactacgacg acaatctgtt
    18841 tggcgagcct gatgaaggta tcgtcatcag ccgctttggt atgcacgctg atgtggaatc
    18901 cgccgatggc gacgttcacc gctgcaatat tcgccgtacc atccgttcgc tggtgaccgg
    18961 cgaccgtgta gtctggcgtc cgggtaaacc ggcggcggaa ggcgtaaatg tcaaagggat
    19021 cgtggaagcg gtgcatgagc gtacctcggt gttgacgcgt ccggatttct acgacggcgt
    19081 aaaacctatt gccgccaaca tcgaccagat tgtcattgtc tccgccattt tgccggagct
    19141 gtcactcaat attatcgacc gttacctggt ggcctgcgaa accttgcaga ttgagccgat
    19201 tattgtgctc aacaagatag acctgctgga cgacgaaggc atggcgttcg tcaacgagca
    19261 gatggatatc taccgcaata tcggttatcg cgtattgatg gtttccagcc atactcagga
    19321 tgggctaaaa ccgctggaag aggcgttgac cgggcgcatc agcatttttg ccgggcagtc
    19381 tggcgtcggc aaatccagcc tgctgaatga gttgctgggg ctgcaaaaag agatcctgac
    19441 caacgatgtc tctgacaact cggggctcgg tcagcacacc acgaccgccg ctcggctgta
    19501 tcacttcccg cacggcggtg atgtgattga ttcccctggt gtgcgtgagt tcggcctctg
    19561 gcacctggag ccggaacaaa tcactcaggg ctttgtcgaa ttccatgact atttaggtct
    19621 gtgtaaatat cgcgattgca aacacgatac cgatccgggc tgcgctatcc gggaagcggt
    19681 tgaggaaggg aaaatcgcgg aaacccgttt cgaaaactat caccgtattc tggaaagcat
    19741 ggcgcaggta aaaacgcgta aaaacttttc tgatacggat gactgacaat taagctaacc
    19801 gtcgttagaa tcgtcccctt tttttcagga tccggcatgt tggccggatc aggaacgaca
    19861 aaacaatggc ctggaggcta ccttgttaaa ttcatttaaa ctttcgctac agtacattct
    19921 gccgaaacta tggcttactc gcctggcggg ttggggcgca agcaagcggg caggatggct
    19981 gacaaaactg gttatcgatc tgttcgttaa atactacaag gtcgacatga aagaggcgca
    20041 aaagccggac accgccagct accgcacctt taacgaattc tttgtccgtc cgctgcgtga
    20101 cgaagtacgc ccaatcgata ccgatccgaa tgtactggtc atgcctgccg atggcgttat
    20161 cagccagttg ggtaaaatcg aagaagataa aatcctgcaa gccaaaggcc acaactacag
    20221 cctcgaagcc ctgctggcag gcaactatct gatggcggac ctgttccgca acggtacgtt
    20281 tgtgaccact tacctctccc cgcgtgacta ccatcgcgta cacatgccgt gcaacggtat
    20341 tctgcgtgag atgatctacg tgccgggcga tctcttctcc gttaaccatc tcaccgctca
    20401 gaacgtgccg aatctgtttg cccgtaacga acgcgtgatt tgccttttcg ataccgaatt
    20461 tggcccaatg gcgcagattc tggtcggagc gacgattgtt ggcagcattg agacggtctg
    20521 ggcgggcacc attacgccgc cgcgcgaagg tatcatcaag cgctggacct ggcctgccgg
    20581 ggaaaacgac ggttctgtgg cactgctgaa aggccaggaa atgggtcgct ttaaactcgg
    20641 ttccaccgtt atcaacctgt ttgcaccggg taaagtgaat ctggttgagc aactggaaag
    20701 cctgtctgtc acgaaaattg gccagccgct ggcagtatct accgaaacct ttgttacgcc
    20761 agacgctgaa cccgccccac ttcctgctga agagatcgaa gcagaacacg acgccagccc
    20821 attggttgac gataaaaaag accaggtcta atccatcaaa ggaaacgctg acgtgcgcct
    20881 gattatcact tttctgatgg cctggtgcct cagttggggg gcgtacgccg cgacggcccc
    20941 cgatagcaaa caaatcactc aggaactgga gcaggcaaaa gcggcgaaac ccgcacagcc
    21001 ggaagtcgta gaggcgctcc agtctgcctt aaatgcgctt gaggaacgaa aaggttccct
    21061 tgagcgcatc aaacaatatc agcaagttat cgataattat ccgaaactct ccgctactct
    21121 gcgcgcacaa ttaaacaaca tgcgtgacga gccgcgcagc gtgtcgccgg gaatgtctac
    21181 cgacgcgctg aatcaggaaa ttctccaggt cagcagccag ttgctggata aaagccgtca
    21241 ggcccagcaa gagcaggagc gcacccgcga gattgccgat tcgctgaatc aactgccgca
    21301 acagcaaacc gacgcccgcc gtcagttaaa tgagatcgag cgccgcctgg gaacgcttac
    21361 cggcaatact ccgctcaatc aggcacaaaa tttcgcgttg cagtctgact ctgcacgtct
    21421 taaggcgctc gttgatgaac tggagctggc gcagctgtct gccaataacc gccaggaatt
    21481 agcgcgctta cgctcagagc tggcggaaaa agagagccag caactggatg cgtatttgca
    21541 ggccttgcgt aatcaattaa acagccaacg tcagcttgag gcggagcggg cgctggaaag
    21601 taccgaattg ctggcagaaa acagcgccga tttgccgaaa gatatcgtcg cgcaattcaa
    21661 aattaaccgc gaactatcgg cggctttgaa tcaacaggcg cagcggatgg atctcgttgc
    21721 ctcgcaacag cgtcaggctg ccagccagac gttacaggtc cggcaggcgt tgaatacgct
    21781 gcgtgaacag tcgcaatggc tgggatcgtc caatctgctc ggcgaagcgc tgcgggcgca
    21841 ggtggcacgg ctgccagaaa tgccaaaacc acaacagctt gataccgaaa tggcgcagtt
    21901 gcgtgtgcaa cggttacgtt atgaggatct gcttaataaa cagccgctgc tacggcaaat
    21961 ccatcaggcc gacggtcagc cgctgaccgc cgagcaaaac cgtattctgg aagcacaact
    22021 gcgcactcag cgtgagttgc tgaactcatt gttgcagggt ggcgacacgc tactattgga
    22081 actgaccaag ctgaaagtct ccaacgggca actggaggat gcgctgaaag aggtgaacga
    22141 agcaacgcac cgctatctgt tctggacctc tgacgtgcgc ccgatgacca tcgcctggcc
    22201 gctggaaatc gcccaggatc tgcgtcgtct catttcgctg gacaccttca gtcagttggg
    22261 caaagccagt gtgatgatgc tgacgagcaa agagacaatt ttgccgctgt ttggcgcgtt
    22321 gattctggtc ggttgcagta tttactcgcg ccgctatttc acccgttttc ttgaacgttc
    22381 ggcggcgaaa gttggcaaag tgactcagga tcacttctgg ctgacgttgc gcactctttt
    22441 ctggtcgatt ctcgtcgcgt caccgttacc ggtgctgtgg atgacgctgg gttacggctt
    22501 gcgcgaggcg tggccttatc cgctggcggt cgcgattggc gatggtgtaa cggctaccgt
    22561 gccgctgctg tgggtagtga tgatttgcgc cacctttgcc cgcccgaacg gcttgtttat
    22621 cgctcatttt ggctggccgc gcgaacgtgt ttcccgtggg atgcgctact acctgatgag
    22681 catcgggctt attgtgccgc tgattatggc gctgatgatg ttcgataacc tcgacgaccg
    22741 tgaattctcc ggttcgctgg gacggctttg ctttatcctc atttgcggtg cgctggcggt
    22801 ggtcaccctc agcctgaaaa aggccgggat cccactgtat ctcaacaaag agggcagcgg
    22861 cgacaacatt accaaccata tgctgtggaa catgatgatt ggcgcgccgt tggttgccat
    22921 tctggcgtcg gctgtgggtt atctggcaac ggcacaggcg ctgttagcga ggcttgaaac
    22981 ctcggttgcc atctggttcc tgctactggt ggtttatcac gttatccgcc gctggatgct
    23041 gatccagcgc cgcaggctgg cgtttgaccg ggcgaagcat cgccgggcag agatgttagc
    23101 gcaacgtgcg cgtggcgaag aggaagcgca tcatcacagt agcccggaag gagcaattga
    23161 agtcgatgaa agcgaagtcg atctcgatgc catcagtgcg caatccttgc ggctggtgcg
    23221 ctcaattttg atgttgatcg ccctgctttc tgtcattgtg ctgtggtcag aaatccattc
    23281 cgctttcggc ttcctcgaaa atatttcgct gtgggatgtc acctccacgg tacaaggcgt
    23341 agaaagtctg gagccaatta ccctcggtgc ggtgctgatt gccattctgg tgtttatcat
    23401 caccacgcag ctggtgcgca acctgcccgc gctgctggaa ctggcgattt tgcagcacct
    23461 ggatttaacg ccgggtacag gctacgccat caccaccatc accaaatatc tgctgatgct
    23521 gattggcggg ctggtcggct tctcgatgat tggtattgaa tggtcgaaat tgcagtggct
    23581 ggtcgccgcg ctcggtgttg gtctcggttt tggtttgcag gaaattttcg ccaactttat
    23641 ctctggtctg attatcctgt tcgaaaaacc gattcgcatt ggcgatacgg tgacaattcg
    23701 cgatctcacc ggtagcgtga cgaaaattaa cacccgcgcc accaccatca gcgactggga
    23761 ccgtaaagag ataatcgtgc cgaacaaggc gtttattacc gagcagttta tcaactggtc
    23821 gctctctgac tcggttacgc gcgtagtgtt gacgattccg gcccctgctg atgccaacag
    23881 tgaagaagtg acggaaatcc tgctcaccgc agcgcgtcgc tgctcgctgg tgatcgacaa
    23941 cccggcaccg gaagtcttcc tggtggatct gcaacaaggg attcagattt tcgagctgcg
    24001 tatttatgcc gctgagatgg gtcaccgtat gccgctacgc catgagatcc accagctgat
    24061 tctggctggc ttccatgccc acggtatcga tatgccattc ccgcccttcc agatgcgtct
    24121 ggaaagcctc aacggtaaac aaacggggag aacgctgacg tctgcgggca aaggtcgtca
    24181 ggcgggaagt ttgtaatgca tgaagctgcc aaatgatgtc aacgtggctc atttagcagc
    24241 ttaacatcat cttcagttat caccggccct ggagagtatc atccatacgc attacttcct
    24301 gacaactcat cgccggagag acgatgagtt gcaggatttc atatgatcag tcgagagcta
    24361 actcaggttt attcgccatg cgactgcaat agttctggta aatcgccatc gctaacagcg
    24421 agaagaagac agggccgcca atcatccaca atgtgctgtc ccagtctccg gcttcaacca
    24481 caggcggaat aatggtgaag acgttcgcaa atgtcaccac cagtacgaca accaccgtcg
    24541 caatcattgc cgacatacgc gttttgaaaa tcacaaatgg tctgtcgaga tcctgacgtg
    24601 ctttaaagaa tgggaaagcc agcgcgagga acaggtaagg aag
//
LOCUS       DAJVUY010000054        24061 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.054, whole genome shotgun sequence.
ACCESSION   DAJVUY010000054 DAJVUY010000000
VERSION     DAJVUY010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24061
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.054"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            324..551
                     /gene="feoA"
                     /locus_tag="OQQ72_001901"
     CDS             324..551
                     /gene="feoA"
                     /locus_tag="OQQ72_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HCS2011653.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            568..2889
                     /gene="feoB"
                     /locus_tag="OQQ72_001902"
     CDS             568..2889
                     /gene="feoB"
                     /locus_tag="OQQ72_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HCS2011654.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGNGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2889..3125
                     /gene="feoC"
                     /locus_tag="OQQ72_001903"
     CDS             2889..3125
                     /gene="feoC"
                     /locus_tag="OQQ72_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HCS2011655.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3328..4206
                     /gene="rpnA"
                     /locus_tag="OQQ72_001904"
     CDS             3328..4206
                     /gene="rpnA"
                     /locus_tag="OQQ72_001904"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HCS2011656.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMGCLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4235..5005)
                     /gene="bioH"
                     /locus_tag="OQQ72_001905"
     CDS             complement(4235..5005)
                     /gene="bioH"
                     /locus_tag="OQQ72_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HCS2011657.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            5043..5726
                     /gene="gntX"
                     /locus_tag="OQQ72_001906"
     CDS             5043..5726
                     /gene="gntX"
                     /locus_tag="OQQ72_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HCS2011658.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5785..6360
                     /gene="nfuA"
                     /locus_tag="OQQ72_001907"
     CDS             5785..6360
                     /gene="nfuA"
                     /locus_tag="OQQ72_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HCS2011659.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6721..8037
                     /gene="gntT"
                     /locus_tag="OQQ72_001908"
     CDS             6721..8037
                     /gene="gntT"
                     /locus_tag="OQQ72_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS2011660.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8082..10166)
                     /gene="malQ"
                     /locus_tag="OQQ72_001909"
     CDS             complement(8082..10166)
                     /gene="malQ"
                     /locus_tag="OQQ72_001909"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HCS2011661.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLETMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10176..12569)
                     /gene="malP"
                     /locus_tag="OQQ72_001910"
     CDS             complement(10176..12569)
                     /gene="malP"
                     /locus_tag="OQQ72_001910"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HCS2011662.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQEVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLQDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13181..15886
                     /gene="malT"
                     /locus_tag="OQQ72_001911"
                     /pseudo
     CDS             13181..15886
                     /gene="malT"
                     /locus_tag="OQQ72_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312287.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
     gene            complement(15929..16945)
                     /gene="rtcA"
                     /locus_tag="OQQ72_001912"
     CDS             complement(15929..16945)
                     /gene="rtcA"
                     /locus_tag="OQQ72_001912"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HCS2011663.1"
                     /translation="MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIEIDGVTR
                     VSIE"
     gene            complement(16949..18175)
                     /gene="rtcB"
                     /locus_tag="OQQ72_001913"
     CDS             complement(16949..18175)
                     /gene="rtcB"
                     /locus_tag="OQQ72_001913"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HCS2011664.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDVMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
     gene            18364..19962
                     /gene="rtcR"
                     /locus_tag="OQQ72_001914"
     CDS             18364..19962
                     /gene="rtcR"
                     /locus_tag="OQQ72_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RtcR"
                     /protein_id="HCS2011665.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWHPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSATGRQLFDVSRQGKASVNDA
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(19944..20702)
                     /locus_tag="OQQ72_001915"
     CDS             complement(19944..20702)
                     /locus_tag="OQQ72_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HCS2011666.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(20719..21549)
                     /gene="glpG"
                     /locus_tag="OQQ72_001916"
     CDS             complement(20719..21549)
                     /gene="glpG"
                     /locus_tag="OQQ72_001916"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HCS2011667.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIIAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(21594..21920)
                     /gene="glpE"
                     /locus_tag="OQQ72_001917"
     CDS             complement(21594..21920)
                     /gene="glpE"
                     /locus_tag="OQQ72_001917"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HCS2011668.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            22110..23615
                     /gene="glpD"
                     /locus_tag="OQQ72_001918"
     CDS             22110..23615
                     /gene="glpD"
                     /locus_tag="OQQ72_001918"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCS2011669.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(23667..>24061)
                     /locus_tag="OQQ72_001919"
     CDS             complement(23667..>24061)
                     /locus_tag="OQQ72_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011670.1"
                     /translation="VMAGIGWQFSRRTPPELKNRLHCWLVFSPVYFWLILSNFILYIS
                     PEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGFALGYYCHWCRKNR
                     NQRKKWGDWVTCLSLAILAQGPLFNYLQ"
BASE COUNT         5657 a         6553 c         6081 g         5770 t
ORIGIN      
        1 accaaactca taatatattc cggcaatatt tatcacttca ttaacaactg aaaccttaat
       61 taaacattag ccagtccggg taattcacta ttcgaattat attttcgctg cgatataacc
      121 ttgagccaca tcaacattga gtcagattat tattcaaacc aacattcgca cacattttaa
      181 gtattgctga tagaaaccat tctcattatc attgtgttat tgattattta atctctcctt
      241 tgttggcaaa tcatctggtc tcatgtcgct gtcaaacgcc ccatgaggta gttatccagt
      301 taatgagaaa caagtaggca cctatgcaat acactccaga tactgcgtgg aaaatcactg
      361 gcttttcccg tgaaatcagc ccggcatatc gccaaaaact gctttctctt ggcatgttac
      421 ctggctcctc ttttaatgtg gtgcgcgtcg ctccactcgg cgaccccatt catatcgaaa
      481 cccgtcgtgt gagcctggta ttacgcaaaa aagatctggc cttattagaa gtggaagcgg
      541 tttcctgtta atacggtgat aacaacaatg aaaaaattaa ccataggctt aattggtaat
      601 ccaaattctg gcaagacaac cttatttaac cagctcactg gcgcacgtca gcgtgtaggt
      661 aactgggctg gcgttaccgt cgaacgtaaa gaagggcaat tctccaccac cgatcatcag
      721 gtcacgctgg tggacctacc cggcacctat tctctgacca ccatctcatc gcagacctcg
      781 ctcgatgagc aaatcgcctg tcactacatt ttgagtggcg acgccgacct gctgattaac
      841 gtggtggatg cgtctaacct tgagcgtaac ctgtacctga cgctacaact gctggaactc
      901 ggcattccct gcattgtggc actgaacatg ctcgacattg ccgagaagca aaatattcgt
      961 attgaaattg atgctctgtc ggcgcgtctg ggctgtccgg tgatcccgct ggtttcaacc
     1021 cgtggtcgcg gtattgaagc gctcaagctg gcgattgatc gctataaagc taacgagaat
     1081 gtggaactgg tgcattacgc acagccgctg ctcaacgaag cagattcact ggcaaaagtg
     1141 atgccttccg acatcccgct gaaacaacgt cgctggctgg gcctgcaaat gctggaaggc
     1201 gatatctaca gccgcgccta cgccggtgaa gcgtcgcagc atctggatgc cgccctcgcc
     1261 cgtctgcgta atgagatgga cgatccggcg ctgcacattg ccgatgcgcg ttaccagtgc
     1321 attgctgcca tctgtgatgt ggtaagcaac accctgacgg cagaacccag ccgtttcacc
     1381 actgcggtag ataaaatcgt gctcaaccgt ttcctcggtc tgccgatttt cctctttgtg
     1441 atgtacctga tgttcctgct ggctatcaac atcggcgggg cgttacagcc gctgtttgac
     1501 gtcggctccg tggcgctatt tgtgcatggt attcaatgga ttggctacac gctccacttc
     1561 ccggactggc tgactatctt cctcgcccag ggcctgggtg gcggcattaa caccgtgctg
     1621 ccactggtgc cgcagattgg catgatgtac ctgttcctct ccttccttga ggactccggg
     1681 tatatggcgc gtgcggcgtt tgtgatggac cgtctgatgc aggcgctggg cttgccgggg
     1741 aaatcctttg tgccgctgat cgtcggtttc ggttgtaacg taccgtcggt aatgggtgca
     1801 cgtacgcttg atgcaccgcg tgaacgtctg atgaccatca tgatggcacc gtttatgtcc
     1861 tgcggcgcgc gtctggctat cttcgcagta ttcgcggctg ccttcttcgg gcagaacggt
     1921 gcgctggcgg tcttctcgct gtatatgctg ggtattgtga tggcggtgct gactggcctg
     1981 atgctcaagt acaccatcat gcgcggtgaa gcgacgccgt ttgtcatgga gttgccggtc
     2041 tatcatgtac cacacgttaa aagcctgatt atccagacct ggcagcgtct gaaaggcttc
     2101 gttctgcgtg ctggtaaagt gatcatcatc gtcagcattt tcctgagcgc tttcaacagc
     2161 ttctcgctga gcgggaaaat cgtcgataac atcaacgact cggcgctggc gtccgtcagc
     2221 cgggtgatca ccccggtctt caagccaatt ggcgtgcatg aagataactg gcaggcaacg
     2281 gttggcctgt ttacaggtgc catggcgaaa gaagtggtag tgggtacgct caacaccctc
     2341 tacaccgcag aaaatattca ggacgaagag ttcaatccgg cagagtttaa cctcggtgaa
     2401 gagctgttca gtgcgataga tgaaacctgg cagagcctga aagacacctt cagccttagc
     2461 gtactgatga accccattga agccagcaaa ggcaacggcg aaatgggtac cggggcgatg
     2521 ggcgtgatgg atcagaaatt cggtagcgca gcagcagctt acagctacct gattttcgtc
     2581 ctgctgtatg taccatgtat ctcggtgatg ggagccatcg cccgtgaatc aagccgtggc
     2641 tggatgggct tctccatcct gtgggggctg aatatcgctt actcgctggc aacattgttc
     2701 tatcaggtcg ccagctacag tcagcaccca acttacagcc tggtgtgcat tctggcggtt
     2761 atcctgttta acatcgtggt tatcggtctg ctgcgccgcg cgcgtagccg ggtggatatc
     2821 gaactgctgg caacccgcaa gtcggtaagc agttgctgcg cagccagcac caccggtgat
     2881 tgccattaat ggcttcactt attcaggtgc gcgatttgct ggcgttacgg ggccgtatgg
     2941 aagcggccca gataagccag acattgaaca ctccacagcc aatgattaac gccatgctgc
     3001 aacaactgga aagtatgggc aaagccgtgc ggattcagga agaacctgac ggctgcctct
     3061 ctggcagttg taaaagctgc ccggaaggaa aagcctgtct gcgcgagtgg tgggcgcttc
     3121 gttaacctta ctccatcgcc tgttttggaa agcccggtat gcgtcggcat ccgggctttt
     3181 ttgcgtgcgg ctttccataa aaatgcaact cttgcagcac ggcgtaagtt cctttgaaag
     3241 catctcgcag ggatgaaaac tcgctaatac acaggtgtgg agtggcgcgt agagtcgcgg
     3301 cattcaaaca acaggtgaag gaacgccatg agcaaaaagc agagttccac cccacacgat
     3361 gcgctgttca aactcttttt acgccaaccg gacacggctc gtgattttct tgcgtttcat
     3421 ttaccggcac ccattcacgc gctttgtgat atgaaaaccc tcaagctgga gtcgagcagc
     3481 tttattgatg acgatctgcg tgaaagctat tccgatgtgc tgtggtcggt gaaaacggaa
     3541 caaggaccag gatacatcta ttgtctgatt gaacatcaaa gcacctcaaa caaactgatc
     3601 gcatttcgca tgatgcgtta cgctattgcc gcaatgcaaa atcaccttga tgctggatac
     3661 aaaacgttgc cgatggtggt gccattgttg ttttaccacg gtattgaaag cccctatccc
     3721 tattcgctgt gttggctgga ttgtttcgcc gatcccaaac tggcaaggca gctttatgcc
     3781 tccgcatttc cgctgattga tgtcaccgtc atgcctgatg atgaaatcat gcagcaccga
     3841 cgtatggcgc tgctggagtt aattcaaaaa catattcgtc aacgcgacct gatggggcta
     3901 gtagagcaaa tgggctgctt attaagtagt ggatacgcta atgacagaca aatcaaaggg
     3961 ctgtttaatt acatactgca aaccggcgac gcggtacgtt ttaacgattt tatcgacggc
     4021 gttgccgaac gttcaccgaa acacaaggag agtttaatga caattgcgga aagattgcgg
     4081 caggaggggg aacaatccaa agccctgcat atagccaaaa taatgcttga atccggagtc
     4141 cctcttacag acatcatgcg ctttaccggg gtgtcagaag aagagttggc tgcggcgagc
     4201 cagtaaattt ctgtctcgcc atttcaaaag ttgcctacac cctctgcttc aacgccacca
     4261 gcaggtgaca aaactcgacc ggatgcgaaa taaacggcgc atgggccgct ttggcgaaga
     4321 tatatgattt gctgcgaggc cagagtttat ccagcatcgg caccactttg cgcggcacca
     4381 gaccatcgag atagccatac aatcgcaaaa acggcatggg cacgttttgc agcggctgac
     4441 ggagatcaac cgttttcagg atttccagcc cgccattaag cacgtcaacc tccggcatcg
     4501 gtaacgccag aacggttttc ttcaacgccc gcgcatcctg gcgcgccgtt tcagtcccca
     4561 tggtttgtaa cgccaggaac cgctccactg tacgctgaaa atcatcactg agttgctgct
     4621 gaaatcccgc cagcacgtcc ggttttatcc ccggccaatc gtcacgagca ctaaaacaag
     4681 gtgacgacgc cacggtgacc agcgcctgaa cacgctcggg atgggttaac gcaatctggc
     4741 ttgccaccag cccgcccaga ctccagccta accaaatggc tttatcaggt gcctgttgca
     4801 gcacggcttc ggccatatca gcaagtgaca gcgcaccaaa tccctggctg cgcccgaagc
     4861 cgggcagatc aacaaggtgc agcgtaaaat gcgagctaag ttcctcgtca atgcaacgcc
     4921 acacttcggc attcagtccc catccgtgca gcagcacaag atgaacattc ccctgacctt
     4981 tggtctgcca ccagatgtta ttcatccgct attgttctct tttgacttac aaggatgaac
     5041 atatgctaac agtaccggga ttatgctggc tatgccgaat gccgctggcg ttaggtcatt
     5101 gggggatttg ttcggtctgc tcacgcgccg cccgtacaga taaaacgtta tgcccacaat
     5161 gtggattacc cgccacacac tcacatcttc cctgcggtcg ctgcctgcaa aaaccaccgc
     5221 cctggcaaag actggtcacg gttgccgact atgcgccgcc gttaagtccg cttatccacc
     5281 agcttaaatt ttcccggcgc agtgaaatcg ccagcgccct gtcacgtctg ttactattgg
     5341 aagtcttaca cgctcgtcgc accaccgggt tgcaattgcc ggatcgcatc atcagcgttc
     5401 cgttatggca gcggcgtcac tggcgtcggg gatttaatca gagcgatttg ctgtgtcagc
     5461 cgttatcacg ctggttgcac tgccgatggg atagcgaagc cgtcacacga acacgggcca
     5521 ctgcgaccca gcattttctc agtgcccggc tacgcaagcg caacctgaaa aatgcctttc
     5581 gtcttgaatt gcccgtgcaa ggtcgccata tggtgattgt ggatgatgtc gttaccaccg
     5641 gaagtaccgt cgcagagatt gcgcagttgc ttttacgcaa tggtgcggcg actgtccagg
     5701 tctggtgcct ttgtcgaacc ttgtagagcc tcgatgatag gcgtattata accaactaaa
     5761 atagtcaact attaggccat tactatgatc cgtatttccg atgctgcaca agcgcacttt
     5821 gccaaactgc tggcaaacca ggaagaaggg acacaaatcc gcgtatttgt gattaaccct
     5881 ggcacgccta acgctgaatg tggtgtttct tattgtccgc cggatgccgt ggaagccacc
     5941 gacactgccc tgaaatttga cctgctgacc gcgtatgttg atgagttaag cgctccttac
     6001 ctggaagatg cagagatcga ttttgttacc gaccagttgg gttctcagct aacactgaaa
     6061 gcgcctaacg ccaaaatgcg taaagtggca gacgatgcac cactgatgga gcgcgtggag
     6121 tatatgctgc agtcgcagat caacccacag cttgctggtc acggtggccg cgtttcactg
     6181 atggaaatca ccgaagacgg ttacgccatt ctgcaatttg gcggcggctg taacggttgt
     6241 tccatggtcg atgtgacgct gaaagaaggg atcgagaagc agctgctaaa cgaattcccg
     6301 gagctgaaag gtgtgcgcga tctcaccgaa caccagcgcg gcgaacactc ctactactaa
     6361 gttatcccct cttttgtaga ttgcccgatg cgacgctaaa gcgtcatttc gggcctacgt
     6421 tgaacatgtg ccagacgttg gcgcagcatt gctttggcaa atccctccct tcgtttctcc
     6481 gcgataatat gaccaacctc tcataattta aatttactcc gctctggtga ttctcaaacg
     6541 ccagatgtta ccggtatcat tcacatgggt accaaacata ctcctgacat ctgactacaa
     6601 taattagttt tagtgggtat cagtcgtggt gccgcaatat ctctgttccc gattgggata
     6661 attagagttt gtcgtcagaa aattgacgtt acccataaca aatgaaaggc caggtaaatc
     6721 atgccattag tcattgttgc tatcggtgta atcttgttgt tgctcctgat gatccgtttc
     6781 aaaatgaacg gcttcatcgc tctcgtcctc gtggcgcttg ctgttggatt aatgcaaggg
     6841 atgccgctgg ataaagttat tggctccatc aaagccggtg tcggcgggac gctcggtagc
     6901 cttgccctga tcatgggttt tggcgcgatg ctgggcaaaa tgctggcaga ctgcggtggc
     6961 gcacaacgta tcgccaccac cctgattgcc aaatttggta aaaaacacat ccagtgggcg
     7021 gtggtactga ccggttttac cgttggtttt gccctgttct atgaagtggg ctttgtgctg
     7081 atgctgccgc tggtgtttac catcgcggct tctgcgaata ttccactgct gtatgttggt
     7141 gtaccaatgg cagctgcact gtctgtgacc cacggcttcc tgccaccgca tccgggtccg
     7201 actgcgattg ccaccatttt caatgccgac atgggtaaaa ccctgctgta cggtactatt
     7261 ctggcaatcc cgaccgtgat tctcgccggt ccggtttacg ctcgcgtgtt gaaaggtatc
     7321 gataagccga tccctgaagg tctgtacagc gcgaaaacct tcagcgaaga agagatgccg
     7381 agctttggcg tcagcgtctg gacctctctg gtgccggtag tgctgatggc gatgcgtgcg
     7441 attgccgaaa tgatcctgcc gaaaggtcac gctttcctgc cggtagcgga gttcctcggt
     7501 gacccggtaa tggctacgct gattgccgtg ctgattgcga tgttcacctt tggtctgaac
     7561 cgtggtcgtt caatggatca gattaacgac acgctggttt cttccatcaa aatcattgcg
     7621 atgatgctgt tgatcatcgg tggtggcggt gcgttcaagc aggtgctggt agacagcggc
     7681 gtggacaaat acattgcttc catgatgcac gaaaccaaca tttctccgct gctgatggcc
     7741 tggtcgattg ctgccgtact gcgtatcgcg ctgggttccg caaccgttgc ggcaatcact
     7801 gcgggtggta tcgcggcacc gctgattgca acgacgggtg ttagcccgga gctgatggtt
     7861 attgcggtgg gttccggtag tgtgattttc tctcatgtga acgatccggg cttctggctg
     7921 ttcaaagagt actttaacct gactatcggc gagaccatca aatcctggtc gatgctggaa
     7981 accattatct cggtgtgcgg tctggtaggc tgtctgctgc tgaatatggt gatttgataa
     8041 cactgactgc cggatgcatc gcatccggca tcaaccgcac tctactgctt cttcgctgca
     8101 gctctgcgcc gtctgtccaa atccttcagc aacttattca cgccatcatc ggcaaacatc
     8161 gtctcaagcg ttgcggaaag cttgcgtcgc cagtttttat actggtaact ggtgccagga
     8221 atattcaccg gttcggccat atccagccag tcttccggct gtagtcctaa cagagcactg
     8281 ttactgtcgg caatgtagcg ctgcaaacca cgattaagcg tcggcgtcat cgacatcaac
     8341 gatgccttat gcccggcacg ttttggcaga caaccatatt tatgcagtgc atccagcagc
     8401 ccttgcttcg ccagttcgcg atcctgatac agaccgcgca gtaccacttc atccggatac
     8461 agccccaggg ttttgcccaa cgttagatcc ccgctctccc agtaaccgcg cagcgtaggc
     8521 aggtcatgtg tcgccgcaac cgccatcgac tgctccggat acgctttcgg tgcacggaac
     8581 gtcttctcgt ggtcgttttc gaaatagagc actttgtagg agtacacacc gctgctgcgc
     8641 agcttaccga caatctctac cggtacggta ccgagatctt caccaatcac catacagcga
     8701 tgacgtttac tttcgagtgc cagaatcgag agcagatcat ccaccggata gtgaacatac
     8761 gcgccctgat ctgccgtctc gccatacggt atccaccaca aacgcagcat cgacatcaca
     8821 tggtcaattc gtaatgcgcc gcagttttgc atattggcac gcaacagctc gataaacggt
     8881 tcataggcac gcgcggtgat gatatgcggg tccattggcg gtaatcccca gttctgcccc
     8941 aacgggccga ggatatccgg cggcgcgcca accgacgctt tcaggcaata tagttcacgg
     9001 tcacaccagg tttccgcccc accttccgct acgccaaccg ccagatcacg atacaagcca
     9061 atcggcattt catagccctg gcttatctcc cagcaggcgg caaactggct gtaagccagc
     9121 cactgcaacc agagataaaa atcgacgtca tcacgatgtt cttcgcagaa ctgacgcact
     9181 tctggtgaat ccacgttctg atacatctct ggccatgcag gccagcccca gcgcatttcg
     9241 tcctctttca cttgctgggc atgtagcgca tcaaaggctg cctgccagaa caggctgtcg
     9301 ccctgctctg caacaaactg gcgaaacgcg gtcatctgct catcatcacg ttgcgcgaaa
     9361 cctttccacg ccattcgtaa tgctgtcatt tttagggcgg taaccgtgga gtaatcgacc
     9421 cagtcggcat cgcgcgcctg ttgcagcgtc tgttgcgtgg tcggcaactg ccaccaggcc
     9481 tgagcctctt cgctaagatg gaaatcttca acggcgttaa cgtcgatata aatcacattc
     9541 agccaacggc gagaagacgg actgtatggg ctggcactct ccggatttgc cggatagagc
     9601 gcatgaatcg ggttcaggcc gatgaacgac ccgccacgtt ttgccacatc caccagcatc
     9661 gctttgagat cgccaaaatc cccaataccc cagttttttt ccgatcgcag cgtataaagc
     9721 tgaacgcagg caccccacag cttttgttta ttcagcaacg cctgcggttc gtaacagcgt
     9781 ttcggggcga caatcacccg gcaatgcgcg cgctggtcgt cctgggtgag tgtcagcgtg
     9841 tgataacctt ccggcagctt cgtcggtaga ttgaacgctt tgccccccgt tacatggcct
     9901 ttgtactgtg ttccttcttc ggtggtcagc agccagctat attcgccgct gccctccacc
     9961 accatcggca tttttttgcc gctggtataa accatgacat tcgggactgg cgttaccgcc
    10021 actttcgtgg cggtacgttg atgcatcgcg tcaagcaaac gccgtttggt ttcggcgcta
    10081 atcgactgcg gtttaccgtg ggcattgatg taattggggc taatccccgc cgccagcgcg
    10141 gcattatcca gacgtttgct ttccatcgag cttccttagc gttttgcctg ccagatacga
    10201 gcctgataat cgcgaataga gcgatccgag ctaaacatac cgcagcgggc ggtattgagg
    10261 atcgccgcgc gagtccaggc ctcctggtcg cggtacagca catccacctg cttttgtgcc
    10321 tcaacatagg ctgcgaaatc cgccatcacc agatacggat cgccgccttg tttgccgata
    10381 ctgtgcagca tctggtcgaa ggcatgctta tcgccgtcgc tgtatttacc gctttccagc
    10441 tctttcaata ctgcgtccag caccttatct ttcttccgcc atttcaccgg gtcgtagcct
    10501 ttggccagaa ttgccttcac ttgttccacg gtatgaccaa aaataaagat attttcttca
    10561 ccgactttct cggcgatttc aacgttcgca ccatccagcg taccgacagt aagcgcacca
    10621 ttgagcgcca gtttcatatt gccggtaccg gaagcttctt tacctgcagt cgaaatttgt
    10681 tcggagatat ccgccgccgg gatcagtttt tccgccgccg aaacgcaata atcctgcagg
    10741 aacaccacct tcaacttatc gccaaccagt ggatcgttgt tgatcacgtc agccactttg
    10801 ttgatcgcaa agataatatt cttcgccagg tagtagcccg gtgccgcttt cgcgccgaag
    10861 aggaagacgc gcggtacgcg atcagcctgc gggttttcac gaatttcttt gtacaacgcc
    10921 agaatatgca gcagattcag gtgctggcgt ttgtactcat gcagacgttt aatctgaata
    10981 tcgaaaatcg cctgtggatt gatctcaata ccggtacgaa ctttcacaaa ctccgccaga
    11041 cggactttat tcgcctgctt gatctcgcga tattgctgac ggaatttcgc atcatcagcg
    11101 aatttttcca gattgatcag ctgatcgaga tcgttagccc actctttttg cagtaattta
    11161 tccaacagag ccgccagtgc agggttgcac tgtttgatcc agcgacgtgg ggtaataccg
    11221 ttggtgacgt tatggaattt gttcggccat agctggtgat attccgggaa cagatctttc
    11281 accaccagat ccgagtgcag cgccgcaaca ccgttcaccg cgaaaccgcc aaccacacac
    11341 aggttcgcca tatgcacttg tttatcgtgc accaccgcca gtttggccca cactttttca
    11401 tcgcccggcc aggttttctc caccagcgtt ttaaagcgag tattaatttc gttaataatc
    11461 tgcatatggc gcggcagtaa gcctttcacc agtttcacat cccagcgttc cagcgcttct
    11521 ggcatcaggg tatggttggt gtaagcgaaa gttttgctgg taatggccca ggcgtcatcc
    11581 cagctcatct ggtgctcatc gatcagcacg cgcagcagtt ctggaatcgc gatagttggg
    11641 tgggtatcgt tcagctgaat aacttcataa tccgccagtt cgtgcagttt acgccccgcc
    11701 agatgatggc gacgcaaaat atccgctacc gaacaggcac actggaagta ctgctgcatc
    11761 aagcgcagct ttttaccggc agtatggttg tcgtttggat agagaacttt ggtcagtttt
    11821 tccgcattga tgccctgctg ttcggcacgc aggaaatcac cgtcgttaaa tttagtcaga
    11881 tcaaacggat gcgcgtgcgt cgcctgccac agacgcagcg gctgcgccac gccattacga
    11941 tagccgacaa cggggagatc ccacgcttga ccggtaatgg taaactccgg ctcccagcgt
    12001 ccgtctttcg tcactttacc gccaatccct acctgcacat ccagtgcttc gttgtggcgg
    12061 aaccacgggt agttactgcg atgccagtca tccggcgctt caacctgttt gccatcgaca
    12121 aaagactggc ggaacaaacc atattgatag ttcagaccgt aacccgtcgc agactgaccg
    12181 atagttgcca ttgagtcgag gaagcacgcc gccagacgtc ccagaccacc gttacccagc
    12241 gccgggtcga tctcttcttc cagcaggtcc gtcagattga tgtcataagc cttcaacgaa
    12301 tcctgtactt cctgatacca gccgagattc aacaggttgt tgcccgtcag gcgaccaatc
    12361 aaaaactcca ttgagatgta gttaacatgt cgctgattcg ccaccggctt ggcgaatggc
    12421 tgagcacgca gcatttcggc cagtgcttca ctcactgcta gccaccactg gcgaggagtc
    12481 atttcagccg cagaatttaa gccataacgc tgccactgac gtgaaagcgc ttcctgaaat
    12541 tgcttatcgt taaaaatagg ttgtgacata ggagttccac ttttcttaga ttttcaacac
    12601 aacgttatcg ctagtttgcc aggctcgatg ttgaccttcc tcatcctgcg ggggattagg
    12661 cagggaggag ttgcggggat gagcaaggaa atgtgatctc aaccacttaa agctagtgca
    12721 aaccacagga ttagcagcaa atcaatgcaa tacagcgcag aaaatctgta tctaagtgca
    12781 aaaaatggcc gttgcgtatt ttcaaaaagc ggaaggtaac tctataaatt aagtaaagga
    12841 gtgaaacagt ttcacaagta aaatatccag tgtgctccat ctcattctta atagatttat
    12901 taagatcatc tttttagatg gcactttcat caggaatgaa gaagaaaccc ttgcttaaat
    12961 gaatctgatg aacataaggg aaaccagtat tcacgctgga tcagcgtcgt tttaggtgag
    13021 ttgttaataa agatttggaa ttgtgacaca gtgcaaattc agacacataa aaaaacgtca
    13081 tcgcttgcat tagaaaggtt tctggccgac cttataacca ttaattacga agcgcaaaaa
    13141 aaataatatt tcctcatttt ccacagtgaa gtgattaact atgctgattc cgtcaaaact
    13201 aagtcgtccg gttcgactcg accataccgt ggttcgtgag cgcctgctgg ctaaactttc
    13261 cggcgcgaac aacttccggc tggcgctgat cacgagtcct gcgggctacg gaaagaccac
    13321 cctcatttcc cagtgggcgg caggcaaaaa cgatatcggc tggtactcgc tggatgaagg
    13381 tgataaccag caagagcgtt tcgccagcta tctcattgcc accgtgcagc aggcaaccaa
    13441 cggtcactgt gcgatatgtg agacgatggc gcaaaaacgg caatatgcca gcctgacgtc
    13501 actcttcgcc cagcttttca ttgagctggc ggaatggcat agcccacttt atctggtcat
    13561 cgatgactat catctgatca ctaatccagt gatccacgag tcaatgcgct tctttattcg
    13621 ccatcaacca gaaaatctca ccctggtggt gttgtcacgc aaccttccgc aactgggcat
    13681 tgccaatctg cgtgttcgtg accaactgct ggaaattggc agtcagcaac tggcatttac
    13741 ccatcaggaa gcgaagcagt tttttgattg ccgtctgtca tcgccgattg aagccgcaga
    13801 aagcagtcgg atttgcgatg acgtttccgg ttgggcgacg gcactacagc taatcgccct
    13861 ctccgcccgg cagaataccc actcagccca taagtcggca cgccgcctgg cgggaatcaa
    13921 tgccagccat ctttcggatt atctggtcga tgaggttttg gataacgtcg atctcgcaac
    13981 gcgccatttt ctgttgaaaa gcgccatttt gcgctcaatg aacgatgcgc tcatcacccg
    14041 tgtgaccggc gaagaaaacg ggcaaatgcg tctcgaagag attgagcgtc aggggctgtt
    14101 tttacagcgg atggatgata ccggcgagtg gttctgctat cacccgctgt ttggcaactt
    14161 cctgcgccag cgctgccagt gggaactggc ggcggagctg ccggaaatcc accgtgccgc
    14221 cgcagaaagc tggatggccc agggatttcc cagcgaagcg attcatcatg cgctggcggc
    14281 aggcgatgcg ctgatgctgc gcgatattct gcttaatcac gcctggagtt tgttcaacca
    14341 tagcgaactg tcgctgctgg aagagtcgct taaggccctg ccgtgggaca gtttgctgga
    14401 aaatccgcag ttagtgttat tgcaggcgtg gctaatgcaa agccaacatc gctatggcga
    14461 agttaacacc ctgctagccc gtgctgaaca tgaaatcaag gacatcagag aaggcaccat
    14521 gcacgcagaa tttaacgctc tgcgcgccca ggtggcgatt aacgatggta atccggatga
    14581 agcggaacgg ctggcaaaac tggcactgga agagctgcca ccgggctggt tctatagccg
    14641 cattgtggca acctcggtgc tgggtgaagt gctgcactgc aaaggcgaat tgacccgctc
    14701 actggcgcta atgcagcaaa ccgaacagat ggcacgccag cacgacgtct ggcactacgc
    14761 cttatggagt ttaatccagc aaagtgaaat tctgtttgcc caagggttcc tgcaaaccgc
    14821 gtgggaaaca caggaaaaag cgttccagct gatcaacgag cagcatctgg aacagctgcc
    14881 gatgcatgag tttctggtgc gcatccgagc acaactgtta tgggcctggg cacggctgga
    14941 tgaagccgaa gcgtcggcgc gtagcgggat tgaagtcttg tcgtcttatc agccacagca
    15001 acagcttcag tgcctggcaa tgttgattca atgctagctg gcccgtggtg atttagataa
    15061 cgcccgtagc cagctgaacc gtctggaaaa cctgctgggg aatggcaaat atcacagcga
    15121 ctggatctct aacgccaaca aagtccgggt gatttactgg caaatgaccg gcgataaagc
    15181 cgccgctgcc aactggttgc gtcatacggc taaaccggag tttgcgaaca accacttcct
    15241 gcaaggtcaa tggcgcaaca ttgcccgcgc acaaatcttg ctgggcgagt ttgaacctgc
    15301 ggaaattgtt ctcgaagaac tcaatgaaaa tgcccgcagt ctgcggttga tgagcgatct
    15361 caaccgtaac ctgttgctgc ttaatcaact gtactggcag gccggacgta aaagtgacgc
    15421 ccagcgcgtg ttgctggacg cattaaaact ggcgaatcgc accggattta tcagtcattt
    15481 tgtcatcgaa ggcgaagcga tggcgcaaca actgcgccag ctgattcaac tcaatacgct
    15541 gccggaactg gaacagcatc gcgcgcagcg tattctgcga gaaatcaatc aacatcatcg
    15601 gcataaattc gcccatttcg atgagaattt cgttgaacgt ctgctaaatc atccggaagt
    15661 gccagaactg atccgcacca gcccgttgac ccaacgtgaa tggcaggtcc tggggctgat
    15721 ctactccggt tacagcaatg agcaaattgc gggcgagctg gaagtggcgg caaccaccat
    15781 caagacgcat atccgcaatc tgtaccaaaa actcggcgtc gcccaccgtc aggccgcggt
    15841 acaacacgcg cagaaactgc tgaagatgat gggatatggg gtgtgagttt agccggataa
    15901 tgcattggat ccggtttaca tctttacatc attcaatact cacccgcgtt acgccatcta
    15961 tttctatcaa accaaaccgc accggcaaga aacgctccac cacggcgata ttggtcagca
    16021 aatggcatga aggatgggcg accgtaaatt ctcccgcgcc cgccagcgcc atcggtagca
    16081 ccagctggtc ggcgagatat tcccccactg ccgccgggct tgccaggtag cgtttcacct
    16141 ctttcactaa ctgcgcggct accacctcgg cactgacgcg cttttcaccg acgacgaaaa
    16201 agcgttcagt gatattttca ctttcgactt ccagcgagac ggtattaccc ggcccctggt
    16261 cgcgcggcag gttatgaata ttctgttcat gcagggaaaa actccccgcc agtgtagcga
    16321 tttcacgctc agcaacatgg cgcggcacac cagctaatag aacttctcca cgcatctgca
    16381 caatgttccc gcgctcgcca agttgcaagg tgttaaacga tgccacgggc gagacttccg
    16441 ttgccaccac gccgcctccg gcaggataaa aaccgtgacg taacagcgtg gtttgctgat
    16501 gaattcctat tttcgccagc agcggctcca gcacccggcg gataaaatcc gcaggcggcg
    16561 ccgacgggtt atcggtgcct ccgctcactt caacacgcga aggtccatcg gcaaaccaca
    16621 gcgcgggcag caccgtttgc agcaccagcg tacagcttcc ggcactaccg atagcaaagc
    16681 ggtactcgcc gccgcgcacg gcgccaggcc ggaagaccag acgctgcgac cccagctccg
    16741 cgccttccac cgttgcccta caaatttccg cagccgcttt taccgcggtc agatgctggc
    16801 gcaacagccc cggtttcgcc cgcccggcac gaatgctggt gatggtaaat ggctggccgg
    16861 ttatcatcga caggctcagc gccgagcgca gaatctgccc gccaccttcg ccctgtgcgc
    16921 catccagcgc aatcatcctt ttcatcattt atccttttac gcacaccacc tgacgcaggg
    16981 tatagataac ttccaccaga tcgctttgtg ccgtcatcac cgcatcaata tctttatacg
    17041 ccatcgggat ttcgtcgatc acttcggcat ctttacggca ttccacatgc gcggtggcac
    17101 gaatttgatc ttccacgctg aacagttttt tcgctttagt tcggctcatt acccgcccgg
    17161 caccgtggct gcacgaacag aacgactctt catttcccag cccacggacg ataaagcttt
    17221 ttgctcccat cgaaccggga ataattccat attgaccagc acgcgcagac accgcgcctt
    17281 tacgcgtcac gtagatctct tcaccaaagt gctgttcttt ttgcacatag ttgtggtgac
    17341 agttgatctc ttccatcgcc agcgtttgtg gctgtctgac cgttttctgc gtaatgctct
    17401 gcaatgccgt taccacgttt tccatcatca catcgcggtt aaggctggca aaaagctgcg
    17461 cccaggccac ggctttcagg taatcatcaa agtattccgt accttccata aagtacgcca
    17521 gatcacgcga cggcaacgtc tcaagcgttt cctgcatctc tttttgtgcc agatcgataa
    17581 agtaagtccc gatggcgtta ccaattccgc gtgaaccgga gtgcagcata atccacacct
    17641 ggtccgactc atcaaggcag attttaataa agtggttacc ggttcccagc gttcccaggt
    17701 gtttatagtt attggtattc aggaaacggg gatatttttg cgttaaccac tgataaccgg
    17761 cttcaagctc agcccatttc gcatcgacgt tgacaggcgg gttttcccat gcgcctttat
    17821 cacgtttaca acgcccggta gtacgcccgt gcggcacggc cgtttcaatc gcctgacgca
    17881 gctctgccag gttttcaggc aggtcttccg ccgttaacgc ggtacgcagc gcgttcattc
    17941 cacagccaat atccacgccc accgccgccg gaataatcgc ccctttggtc gggatcacgc
    18001 taccaatggt ggaatcttta cccaggtgta catcaggcat taccgcaata tgtttgaaaa
    18061 taaacggcat cttcgccgta ttaataagtt gctgacgcgc atcggcttct accggcacgc
    18121 ctttggtcca catttttacc ggggcatttt cagtggtcag taattcgtaa ttcattttgt
    18181 ttttctcttt tcgttgtttg ctgtcctgat aattgcaacc gtcgtgccag aaaattaaat
    18241 aagtaaatta attttttaat tcattgtttt taaaaagatt atatctttat gtccgtaacc
    18301 ggagatttcc cgcaaagccg atttaccgat aatgaaatat cgtcttttat aaggatatct
    18361 aagatgcgta aaacagtagc ttttggcttt gtcggaacgg tgctggatta tgccgggcgc
    18421 ggcagtcagc gctggtcaaa atggcatccg acactctgtt tatgccagca agaatcgttg
    18481 gtcatcgatc gactggaatt attgcatgac gcccgctcgt gctcgctatt tgaaacgctt
    18541 aaacgcgata tcgccagcgt ttcgccagaa acagaagtgg tgagcattga gattgaactg
    18601 cataacccgt gggatttcga agaggtttac gcctgcctgc atgatttcgc ccgtggttac
    18661 aagtttcagc cagaaaaaga agactattta attcacatca ccaccggcac ccacgtcgcg
    18721 cagatttgct ggtttctgct ggcggaagcg cgttatctac ccgcccggtt gatacaaact
    18781 tcaccaccgc gcaaaaaaga acaaccgcgc ggtgccggtg aagtgacgat tatcgatctc
    18841 gatctaagcc gttataacgc catcgccagc cgctttgccg aggaacgcca gcaaacgctt
    18901 gattttctta agtccggcat tgccacgcgt aacccccact tcaaccgcat gattgagcag
    18961 attgaaaaag tggcgattaa atcccgcgca ccgatcctgc ttaacggccc aaccggtgcg
    19021 ggaaagtcat ttctggcgcg acgtatattt gaattaaaac aggcgcggca tcagtttagc
    19081 ggcgcgtttg tggaagtgaa ctgcgccacc ctgcgcggcg ataccgccat gtcgacgctg
    19141 tttggtcatg tgaaaggcgc gtttaccggg gcgcgggaat ctcgtgaagg tttattacgc
    19201 agcgccaacg gcggaatgtt gttttttgat gagattggcg aactgggcgc agacgaacag
    19261 gcaatgctgc taaaagccat tgaagagaaa accttttacc cgtttggcag cgatcgccag
    19321 gtgagcagtg attttcagct tatcgccgga acggtgcgcg atttgcgcca gctggttgcc
    19381 gaaggcaaat ttcgcgaaga tctgtacgcg cggatcaatc tctggacctt caccctgccg
    19441 ggtctacgcc agcgccagga agatattgaa ccgaaccttg attatgaagt ggagcgccac
    19501 gccacactca ctggcgacag cgtgcgtttt aacaccgaag cgcggcgcgc ctggttggct
    19561 tttgcgacct ctccccaggc aacatggcgc ggtaactttc gcgaactttc tgccagcgtc
    19621 acgcggatgg ccacctttgc cactagcgga cgcatcactc tggacgtggt tgaagatgag
    19681 ataaaccgtc tgcgctataa ctggcaggag agccgcccct ccgcgcttac ggcgttgctg
    19741 ggcgcagagg cagaaaacat cgatctcttc gaccgtatgc aactggaaca cgttatcgct
    19801 atctgccgcc aggcaaagtc gctttctgca accggacgac agctttttga tgtttcgcgc
    19861 cagggaaaag ccagcgtcaa tgacgcggat cggctacgca aatacctggc gcgttttggt
    19921 ctgacgtggg aagccgtgca ggatcagcac agctccagtt gaatatgatg gtccgtcagc
    19981 acctgcatta cgcttactgg cggcggggcg tcggtgtaga cggcatctac catgctgatg
    20041 ctgcccatat tgaccatcgc gttacggcca aatttcgagt gatcgacaac cagcataacg
    20101 tggcgcgagt tctcaataat ggcgcgcttg gtgcgaactt cgtggtaatc gaactccagc
    20161 agcgagccgt cgctatcgat gccgcttatc cccagaatgc cgaaatcaag gcggaactgg
    20221 gagataaaat cgagcgtcgc ttcgccaatg atcccgccat cgcggctgcg taattcgcca
    20281 ccagcgagaa taatgcggaa atcttctttt accatcaacg tgttagcaac attgagattg
    20341 ttggtgacaa tacgcaaatt gctgtgatta agcagcgcgt gcgccaccgc ttccggcgtg
    20401 gtgccgatat cgataaacag tgtcgagccg ttggggattt gctccgccac tttgcgggca
    20461 atcctctctt tttcttcggt ctgggtggct ttgcgatcgt gccacggcgt gttaaccgaa
    20521 ctggaaggca gcgccgcacc gccatggtga cgcaggatca ggttttgctc cgccagctca
    20581 ttgaggtcgc ggcgaatagt ctgcgggctg acggagaaat gctctaccag ctcttcagta
    20641 ctgacataac cctgctgttt aaccagttcg ataataccgt tgtgacgttg tgtttgtttc
    20701 atttataaat ccctggaatt attttcgttt tcgcgcattg agcgaatcaa caaaagccat
    20761 cgctaaaccc acggctaacc cggcgatgtg tgctccgttc gccatcgaca tcccaaacaa
    20821 atcaaaccat ccggcgataa tccagatcag cgcaaagata attaacccac gttgcaggta
    20881 aatgccactt tgcggatcgc gctcaccacg tagccagacg tagcccatca gcgcatacac
    20941 cacgccagaa agcccgccaa accacggccc gctgaatttt tgctgcacat agccgcttaa
    21001 cagggcacta atgagagtaa taacaattag cttaccgcta ccgaggcgtt tttccaccgc
    21061 accgccgaga taccaccacc agagcaggtt aaagaggata tgcatcagcg agaagtgcat
    21121 taacgcgtgg gtgaagtaac gccagaactc aaatttcagt gttggatcga atggccaggc
    21181 cagccataac atcacttcct gatcgccgag aatttgcatg gcgataaaca ccaccacgca
    21241 ggcgatcatc accacccagg ttaccggacc tgcgcgttca cgcaaggcag caaagaaagg
    21301 ataacggcga taatgcagac cactgccggt atggcccgcc tgccagctgg ccgccagata
    21361 acgcggatct gccgggtttt cgagaaaacg cgccagctcc gcccgcacgc gctcggcctg
    21421 ggactcatcc gccagccaga catcgctttg gttatgttgt tgaatcgtaa ggataacacc
    21481 ctgcgtcgcc atgtaatcaa caaacgcctg cgccacgcgg gggttagcaa aagaggtaat
    21541 catcaacatc gttgctgtcg cttattccac acaaaagggg acagtataaa gcgttacgcg
    21601 ccgtacgcca cctctgcggg aaactgacgc tgccaggctt caaaaccgcc gtcaatgcta
    21661 tagaccacat cgtagccctg ttgcagcaga tactgcgccg cgcctttgct gctattgccg
    21721 tgataacaca tcaccatcac cggagtgtca aagtcgttat cacgcataaa cgcgcccagc
    21781 gtgtcgttgg ttaaatggaa agcctgcacc gcatgtccca ttgcgaaact ctgtggatcg
    21841 cgaatatcga ccagcaccgc ctctttttcc tgcaacttct ggtgcgcgtc ggcaacgtta
    21901 atacattcga acagatccat gcgtctctct ttctttacaa acaagtgggc aaatttaccg
    21961 cacagtttac gtcgaagcgg cagataaacg ccataatgtt atacatatca ctctaaaatg
    22021 ttttttcaat gttacctaaa gcgcgattct ttgctaatat gttcgataac gaacatttat
    22081 gagctttaac gaaagtgaat gagggcagca tggaaaccaa agatctgatt gtgataggtg
    22141 gcggcatcaa tggtgctggt atcgcggcag acgccgctgg acgcggttta tccgtgctga
    22201 tgctggaggc gcaggatctc gcttgcgcga cctcttccgc cagttcaaaa ctcattcacg
    22261 gtggcctgcg ctaccttgag cactatgaat tccgcctggt cagcgaggcg ctggctgaac
    22321 gtgaagtgct gctgaaaatg gctccgcata tcgccttccc aatgcgtttt cgcctgccac
    22381 atcgtccgca tctgcgcccg gcgtggatga ttcggattgg tctgtttatg tacgatcatc
    22441 tgggtaaacg caccagcctg ccgggatcaa ccggtttgcg ttttggcgca aactcagtgt
    22501 taaaaccgga aattaagcgc ggattcgaat attctgactg ttgggtagac gacgcccgtc
    22561 tggtactcgc caacgcccag atggtggtgc gtaaaggcgg cgaagtgctt actcggactc
    22621 gcgccacctc tgctcgccgc gaaaacggcc tgtggattgt ggaagcggaa gatatcgata
    22681 ccggcaaaaa atatagctgg caagcgcgcg gcctggttaa cgccaccggc ccgtgggtga
    22741 aacagttctt cgacgagggg atgcatctgc cttcgcctta tggcattcgc ctgatcaaag
    22801 gcagccatat tgtggtgccg cgtgtgcata cccagaagca ggcctacatt ctgcaaaacg
    22861 aagataaacg tattgtgttc gtgatcccgt ggatggacga attttccatc atcggcacca
    22921 ccgacgtaga gtataaaggc gatccgaaag cggtgaagat tgaagagagt gaaatcaact
    22981 atctgctgaa agtgtataac gcgcacttta aaaaacagct tagccgtgac gatatcgtct
    23041 ggacctactc cggtgtgcgt ccgctgtgtg atgatgagtc cgactcgccg caggctatta
    23101 cccgtgatta cacccttgat atccatgatg aaaacggcaa agcaccgctg ctgtcggtat
    23161 tcggcggtaa gctgaccacc taccgaaaac tggcagaaca tgcgctggaa aaactgacgc
    23221 cgtattatca gggtattggc ccggcgtgga cgaaagagag cgtgctgccg ggtggtgcca
    23281 ttgaaggcga ccgcgacgat tacgcagctc gtctgcgccg tcgctatcca ttcctgactg
    23341 aatcgctggc gcgtcattac gcacgcactt acggcagcaa cagcgagctg ctgctcggca
    23401 atgcgggggc gataagcgac ctcggggagg atttcggtca tgagttctac gaagcggaac
    23461 tgaaatacct ggtggatcac gaatgggtcc gccgcaccga cgatgccctt tggcgtcgca
    23521 caaaacaagg catgtggctg aatgcggatc aacaatctcg tgtgagtcag tggctggtgg
    23581 aatatacgca gcagaagttg tcgctggcgt cgtaaggatg atgcccggtt gaagtgcaac
    23641 cgggctattt ggattcctta gactattcat tgtaaataat tgaataacgg cccctgagct
    23701 aaaatcgcca aacttaagca cgttacccaa tcgccccact tcttcctctg gtttctattt
    23761 tttctgcacc aatggcaata atatcccaat gcaaaaccaa gctgtgcact aatcgggccg
    23821 acaaaatcag tccaaggctg cggccaaaaa ggggaaaaat tcaggggagg ccagacaaac
    23881 gtcagaaaga aatttcggat attttccagc aacgctgatt tctctggaga aatataaaga
    23941 atgaaattcg agagaattaa ccagaaatag accggcgaaa agaccagcca gcaatgcagt
    24001 ctgtttttta attcaggagg cgttctgcgg gagaattgcc aaccgatgcc agccattaca
    24061 c
//
LOCUS       DAJVUY010000055        23484 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.055, whole genome shotgun sequence.
ACCESSION   DAJVUY010000055 DAJVUY010000000
VERSION     DAJVUY010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23484
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.055"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..104)
                     /locus_tag="OQQ72_001920"
     CDS             complement(<1..104)
                     /locus_tag="OQQ72_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HCS2011671.1"
                     /translation="MGSLPLKGNMKQKITDYLDEIYGGTFTATHLQKLV"
     gene            complement(289..603)
                     /gene="pspE"
                     /locus_tag="OQQ72_001921"
     CDS             complement(289..603)
                     /gene="pspE"
                     /locus_tag="OQQ72_001921"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HCS2011672.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(678..899)
                     /gene="pspD"
                     /locus_tag="OQQ72_001922"
     CDS             complement(678..899)
                     /gene="pspD"
                     /locus_tag="OQQ72_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HCS2011673.1"
                     /translation="MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(908..1267)
                     /gene="pspC"
                     /locus_tag="OQQ72_001923"
     CDS             complement(908..1267)
                     /gene="pspC"
                     /locus_tag="OQQ72_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HCS2011674.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1267..1491)
                     /gene="pspB"
                     /locus_tag="OQQ72_001924"
     CDS             complement(1267..1491)
                     /gene="pspB"
                     /locus_tag="OQQ72_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HCS2011675.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLADEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1545..2213)
                     /gene="pspA"
                     /locus_tag="OQQ72_001925"
     CDS             complement(1545..2213)
                     /gene="pspA"
                     /locus_tag="OQQ72_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HCS2011676.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKESGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2380..3357
                     /gene="pspF"
                     /locus_tag="OQQ72_001926"
     CDS             2380..3357
                     /gene="pspF"
                     /locus_tag="OQQ72_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HCS2011677.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3477..4742)
                     /gene="puuE"
                     /locus_tag="OQQ72_001927"
     CDS             complement(3477..4742)
                     /gene="puuE"
                     /locus_tag="OQQ72_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HCS2011678.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDAAMKILQDALSD"
     gene            complement(4780..6049)
                     /gene="puuB"
                     /locus_tag="OQQ72_001928"
                     /pseudo
     CDS             complement(4780..6049)
                     /gene="puuB"
                     /locus_tag="OQQ72_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415817.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylputrescine oxidase"
     gene            complement(6051..7538)
                     /gene="puuC"
                     /locus_tag="OQQ72_001929"
     CDS             complement(6051..7538)
                     /gene="puuC"
                     /locus_tag="OQQ72_001929"
                     /EC_number="1.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
                     /protein_id="HCS2011679.1"
                     /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT
                     QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA
                     LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV
                     IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLVGLAKEAGLPDGVLN
                     VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV
                     FSDCSDLQKAASSTAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP
                     LDPATTMGTLIDCAHADSVHSFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS
                     LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWMRDLSRAHRMSRRLKAGSVF
                     VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA"
     gene            complement(7813..8370)
                     /gene="puuR"
                     /locus_tag="OQQ72_001930"
     CDS             complement(7813..8370)
                     /gene="puuR"
                     /locus_tag="OQQ72_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HCS2011680.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8397..9160)
                     /gene="puuD"
                     /locus_tag="OQQ72_001931"
                     /pseudo
     CDS             complement(8397..9160)
                     /gene="puuD"
                     /locus_tag="OQQ72_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9372..10790
                     /gene="puuA"
                     /locus_tag="OQQ72_001932"
     CDS             9372..10790
                     /gene="puuA"
                     /locus_tag="OQQ72_001932"
                     /EC_number="6.3.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-putrescine ligase"
                     /protein_id="HCS2011681.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDNRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHSTFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10939..11104
                     /locus_tag="OQQ72_001933"
                     /pseudo
     CDS             10939..11104
                     /locus_tag="OQQ72_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            11094..12479
                     /gene="puuP"
                     /locus_tag="OQQ72_001934"
     CDS             11094..12479
                     /gene="puuP"
                     /locus_tag="OQQ72_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HCS2011682.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12613..12858
                     /locus_tag="OQQ72_001935"
     CDS             12613..12858
                     /locus_tag="OQQ72_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HCS2011683.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13171..14814
                     /gene="sapA"
                     /locus_tag="OQQ72_001936"
     CDS             13171..14814
                     /gene="sapA"
                     /locus_tag="OQQ72_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HCS2011684.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14811..15776
                     /gene="sapB"
                     /locus_tag="OQQ72_001937"
     CDS             14811..15776
                     /gene="sapB"
                     /locus_tag="OQQ72_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HCS2011685.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15763..16653
                     /gene="sapC"
                     /locus_tag="OQQ72_001938"
     CDS             15763..16653
                     /gene="sapC"
                     /locus_tag="OQQ72_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HCS2011686.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16653..17645
                     /gene="sapD"
                     /locus_tag="OQQ72_001939"
     CDS             16653..17645
                     /gene="sapD"
                     /locus_tag="OQQ72_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HCS2011687.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVIADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17647..18453
                     /gene="sapF"
                     /locus_tag="OQQ72_001940"
     CDS             17647..18453
                     /gene="sapF"
                     /locus_tag="OQQ72_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HCS2011688.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18521..18874
                     /locus_tag="OQQ72_001941"
     CDS             18521..18874
                     /locus_tag="OQQ72_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HCS2011689.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19242..20030
                     /gene="fabI"
                     /locus_tag="OQQ72_001942"
     CDS             19242..20030
                     /gene="fabI"
                     /locus_tag="OQQ72_001942"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HCS2011690.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20175..21302
                     /locus_tag="OQQ72_001943"
     CDS             20175..21302
                     /locus_tag="OQQ72_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HCS2011691.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTARDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETHSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21370..23304
                     /gene="rnb"
                     /locus_tag="OQQ72_001944"
     CDS             21370..23304
                     /gene="rnb"
                     /locus_tag="OQQ72_001944"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HCS2011692.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPFLHAMRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPVA"
     gene            complement(23382..23484)
                     /locus_tag="OQQ72_001945"
                     /pseudo
     CDS             complement(23382..23484)
                     /locus_tag="OQQ72_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791239.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5306 a         6205 c         6115 g         5858 t
ORIGIN      
        1 acaagtttct gtaaatgagt tgcggtaaat gttccaccgt agatttcgtc caggtaatca
       61 gtaattttct gtttcatgtt gcctttcagt ggtagcgatc ccatgaaacg agagactact
      121 ccgcagaaaa taaactgtca attgagcaca agggttttag tcacgcagga aatcattttt
      181 taccagggaa aaagcgtatt tgtgagctga cgcaaataat ctatggggat gtaaataagg
      241 tgtgacagaa aaaaaacggc gcataagcgc cgctcatggt gaattctttt aacctttgac
      301 cttcggcatt gcgatgtctt tcaagccacc ggcgttctca acgtgggtat atcccatctc
      361 gctaaggatc tcttttgctt gccctgactg gcgtccggca ttgcaataca ctttcacggt
      421 gtcgttttta tccggaacgg cggtggcaat gcgctctttc acttccttca ggggaatatt
      481 gatggccccc tgaacgtgct cttgctgata ctgctctgga acacgaacat cgatccagtg
      541 ttcagcggcg aaaacgggca gtgaaaacac cagtgccaga gcaagtaagc cttttttaaa
      601 catgtaagcg tccttctatg gatgaaaatt gccatccatt atacgcctga gatttaacaa
      661 tttttgcgaa actcccctca ccttttataa cgctgtgcca gtttattagc agcccgactt
      721 aacagcggtt ccagcgccac agccagcaac attttcagcg gtcggcgagc aactgatttt
      781 atcgcccagc ccgctacacc cgccgggcca tagcgcagtg cggtaagaag taccagcttg
      841 cctgctaatt tgaaaccagg ctttaccttt tgcccggcct gttgccagcg agtattcata
      901 actttcctca cagttgacgg aaacggctac gtaacgtgaa agtatcggaa gtgacataac
      961 gttccatctc gcgtaaacgc gtttcacttg ccgccagttc acggtcgact tcatccagca
     1021 attcgctgct ggagggtagc tgctcaccaa aggccatgtt gtccggcatt ggatcaagcg
     1081 caaatgacaa aatgatgtaa gcaaccaggg taaacagcgc cagaccgaag aaaatcgaca
     1141 gcaccaccag gatacgcacc agttttaccg gtacatcaaa atagttggca atcccggcgc
     1201 agacgccgcg gaccatgccc tgctgtggaa tacgccataa ttttttattg agattaatgc
     1261 ccgccattag cgatccctcc agttcggatg ttctgcatca agaatagatt ccagcgcctg
     1321 aatacgttcg cgcatccgtt ttgcttcatc agccagttgc gctaatcgct gctgctcact
     1381 ttgcgacaat tcactgcgac cagaacgatt gctgtaatgc agccataacc agatcggtaa
     1441 aacaaacagc acaaaaatgg ttaacggaat agccagaaat agcgcgctca taagtactcc
     1501 ttagacgatg agcggcggcg cgttcggacg ccgcctagat gttattattg attgtcttgc
     1561 ttcattttgg cttttaattg tgccagttgt tcgctgattg catcatcggc tttcagttcg
     1621 gcaaactgat cgtccagcga tttttgttta ccgaagctgt ggctttctgc ttccgcttcc
     1681 atctggtcaa tacgacgttc gaaagattcg aaacgagcca ttgcttcatc cagtttgcca
     1741 ctgtccagct gacgacgcac atcgcgcgac gagtttgccg cctgatggcg taacatcaat
     1801 gcctgctggc gagcgcgtgt ttcgctcaat ttgttttcca gctcaccgct ctctttcttc
     1861 atgcgtgcca gcgtatcgtc caccagcgtc acttcatgtt ccagactctt aatcagatcg
     1921 gtcagtttct gtttttcaat taacgccgca cgtgccaaat cctctctctc tttcagcagc
     1981 gccagttcgg ctttttcctg ccattcaact tcacgcgccg acgcttgttc aatacggcga
     2041 gtcagctgtt tcttttctgc caacgcacgc gccgaagtag aacgtacttc aaccagtgta
     2101 tcttccatct cctggatcat cagacgcacc agtttctgtg gatcttccgc tttctctaac
     2161 agagcgttga tgttggcatt cacgatgtcg gcaaagcgag aaaaaatacc cataatgttg
     2221 tcctcttgat ttctgcgttc aggattgtcc tgctgaactg ttaatacaat ttgcgtgcca
     2281 attttttatc tttttgattt ataaagatct gattgaagaa tcatcagcaa catgccagga
     2341 tgaattagcg aattacacta acaagtggcg aatttcatca tggcagaata caaagataat
     2401 ttacttggtg aggcgaacag ctttctcgaa gtgctggaac aggtttcgca tctcgcaccg
     2461 ctggacaaac cggtgctcat catcggcgaa cgcggcaccg gtaaagagct gattgccagc
     2521 cgcctgcatt atctctcctc ccgttggcaa gggccgttta tttcccttaa ctgcgcggcg
     2581 ttaaatgaaa atctgctgga ttccgaactg tttggtcacg aagcgggggc gtttaccggt
     2641 gcgcaaaaac gtcatccagg gagatttgaa cgtgccgacg gcggtacgct atttcttgat
     2701 gaactcgcta cggcaccgat gatggtgcag gagaaattat tgcgcgtgat tgagtacggt
     2761 gaactggagc gcgttggcgg cagccagcca ttgcaggtga atgtgcggtt ggtatgcgcg
     2821 acgaatgccg atctcccggc gacggtcaat gaaggcactt ttcgcgctga cctgctcgac
     2881 cgactggctt ttgatgttgt acaactgcca ccactgcgcg agcgcgaaag cgacataatg
     2941 ttgatggcag aacactttgc catccagatg tgtcgggaaa tcaagctgcc tctgttcccg
     3001 gggtttacgg agcgcgccag agaaacattg ctgaattatc gttggccggg aaatattcgt
     3061 gaattgaaaa acgtggtgga acgttcagtg tatcgccacg gcaccagcga ttatccgctt
     3121 gatgacatca ttattgatcc ctttaaacgg cgtccgcctg aagacgctat cgccgtttca
     3181 gaaaccacct cgcttccaac actgccgctg gatttacgtg agtttcagat gcagcaggaa
     3241 aaagagttgc tgcaactcag tttgcaacaa gggaaatata accagaagcg cgcggctgaa
     3301 ttactggggt taacttatca tcagttccgc gcgttgttga aaaagcacca gatttagcga
     3361 agttgagcaa tacaacttgc cggatgcggc gtgaatgctt tattcggcat acataatcaa
     3421 taagtcgttt gcaggcctga taagcgcagc gcatcagaca ttattgcgtt gggctattaa
     3481 tcgctcagcg catcctgcaa aattttcatt gccgcatcga attgcgcatc cggaatggtc
     3541 agcggataca ggaagcgaat cacgttgccg tatgcgccac aggtcagcag gagcagcccc
     3601 tgcgccagcg cgcgttgctg gattttctgt gcaatcgccg ctgacggctc gcccgtttgc
     3661 ggatcgttaa actctgccgc aatcatcgac cccaggccgc gtaccgcagc aatggccgga
     3721 acgctttctt tggcatcaat caacgtgttt ttgagacgct ggcccagttg attcgcgcgt
     3781 tcgcagagtg attctttgtc gataatattg agcaccgcgt gcgcggcagc caccgccagc
     3841 gggttcccgg cgtaggtgcc acccaacccg cccggcgcgg gcgcgtccat aatattcgcg
     3901 ttaccgacca cgcccgaaag cggcatcccg cccgcgaggc ttttcgccat cgtcattaag
     3961 tccggcttat cggcgtaatg atccatggca aacagtttac cggtacgcgc aaagccgctt
     4021 tgcacttcat cggcaatcat cacaataccg tgctcgtcgc acaggcggcg aatggcggca
     4081 accagctctt ttggcgcaac gttgaaaccg ccctcgccct gcaccggttc gaaaataatg
     4141 gccgccacct gcttcgcttc aatgtccgat ttaaacaagc gttcgatggc gtcgagggag
     4201 tcctgtgttg aaatgccgtg taaatctgac ggataaggta cgtgatacac cgaaccaggg
     4261 aacgggccga agccgatttt gtacggcgca acttttccgg tcagcgccat ggtcatatat
     4321 gtacgaccgt ggaagccgcc gctaaacgca atcacgccag gtcgtccggt atgggcgcga
     4381 gcaattttca ccgcgttttc caccgcttcc gcgccggtag tgaagaatgc ggttttagcc
     4441 tgcccgctca ctggggcaag ggcgttaatt ttctccgcca gcgtgacgta gctttcgtac
     4501 ggcacaatct gatacgccgt gtgggtaaac tgttgcaatt gctgctccac cgccgcgacc
     4561 agatcagggt ggcgatgccc ggtattcagc accgcaatgc ctgcggcgaa atcgatgtat
     4621 tcgttgccct ctacgtcctt cagcgtagcg ttttctgccg actgggcgaa gaagttacac
     4681 atcacgccaa ccccgcgtgg ggtagcagaa agacgacgct gatggaattc attgttgctc
     4741 atgtttcaca ccttttgact cttcactgtt aatcggaaat taaacgccca gacgatcgcg
     4801 caggctgtaa taagccgcgc ccatcgcggt aaatggcacg cgcagcgtgc gcccgccggg
     4861 gaacgggtaa tgcggcagat tggcgaaggc atcgaaacgc tcggcgtcac cgcgcagcag
     4921 ttcagcaatc aaacgcccgg cgaggtgggt acaggtgacg ccgtggccgc tgtagccctg
     4981 catgtaatag atgttggtat cgaggcgacc gaactgcggc atccgtgaaa gggtcagcag
     5041 gaagttgccc gtccagcgat agtcgatttt gacgcccttc agctgcggga aggttttcag
     5101 cagtttcggc acaacaagac gctcaacgtc atccgggtcg cgcgcgccgt agaccacgcc
     5161 gccgccgtac agcaaacggt tgtcggcggt aagacggtag taatcaagca gataattaca
     5221 gtcttccaca cagtagtttt tcgggatcag cgaacgggct aaatcttccg acagccgttc
     5281 ggtggtgatc acctgcgtgc cgcacggcat gctgcgtttc gccagttccg gctctacttt
     5341 atcgcccaga tacgcattcc cggcgacaat cacatacttc gccgtcacct gacctttggc
     5401 agtgcgcaca acggctggcg tggtgtgctg gatctgcgtc acggcagaaa gttcatacac
     5461 gcgcccgccg ttgaggcgga tggcgtccgc ttcgccaatg gcgaggttta gtgggtgaat
     5521 atgcccaccg ctgtgatcca gcagcgcacc ggtatagcga tcgctggcta cttcacggcg
     5581 aatggcgttg gcgtccagca attccagctg tttattgccg tagcgttccc agttctcttt
     5641 ctgctcttca agtgtggcga gctgtttatc attcatcgcc acaaacaggc tgccggggcg
     5701 gtagtcgcag tcaatctgat aacgtttgat acgttcgcgg atgatctcac caccttcgaa
     5761 catcatgctg ccgagcatag gggcggtgtc catgccgtag cttttttcga tcacgtcgat
     5821 gtcgcggttg taggagttca caagctgccc gccattgcgc ccgcttgcgc caaagccgat
     5881 gcgtgaggct tcgagaacca ctacgtcaaa gcccgcttcc gccagatgca gcgcggagga
     5941 gagcccggta tagccgccgc caaccacgca aacgtcgcag gtgattgact cattcagggt
     6001 gtcgaatggc acgtatttat gcgtaataac tgctggtatg ttcggtcatt tcaggcctcc
     6061 aggcttatcc agatggtttt cagttcggtg aatttttcaa gggcatgcag ggatttgtcg
     6121 cgaccgttgc cgctctgctt atagccgcca aacggcacgg tcatatcgcc gtcgttgtag
     6181 ttattgacga agacggaacc ggctttcagg cggcggctca tacggtgcgc gcgggagagg
     6241 tcgcgcatcc ataccgccgc gccaaggccg tactggctgt cgttggcaag ctgtagcgcc
     6301 tgttcttctg atgtgaaacg cgtgaccacc agcaccggac cgaaaatctc ttcgcggctt
     6361 aaggacgcat tcgggtctac atccacaaag atggtcgggc cgatggcggc agccagcccg
     6421 gcgttacggc catccagcag cagttgccct ttgccttcgc cctcacgaat aaagctatgg
     6481 accgagtcgg cgtgggcgca gtcgattaaa gtgcccatgg tggttgcggg gtcaagcgga
     6541 tggcccggct gccagttttg cgcctgctgt tttaacaggg ctaagaattc atcggcgatg
     6601 ctctcttcca gcaacaggcg tgttccggcg atgcacacct gaccctggtt gtagaagatg
     6661 cctgctgcgg tggagctcgc cgctttttgc agatccgaac aatcggagaa aacgatgttg
     6721 gcgcttttgc cgcccgcttc cagccagacg cgtttcatgt tgctgtcgcc cgcatctttc
     6781 agcagctgtt tcccggtacg ggttgaaccg gtaaaggcaa tggcgtcgat atcgttatga
     6841 cgcgacagcg cctgccccgc ttcatgacca aaacccgtca ccacgttcaa cacaccatcc
     6901 ggcaagcctg cttctttcgc cagccccacg agacgaatcg cactgagcgg tgatttttca
     6961 gacggtttta gaatcacgct gtttcccgcc gccagcgccg ggccgagttt ccagcaagtc
     7021 agcaacagcg ggaagttcca cggcacgatg gcggcaatca cgccgaccgg ttcacgcacg
     7081 atcatcgcca gctcatggct actggtggtc gccacttcgc catacacttt gtcgatcgct
     7141 tcggcgtacc agcgaatggc gcgcgccgcg ccgggaatat catcacgcag actgtgacga
     7201 atcggtttgc cggtgtcgag agtttccagc agtgccagct cttcggcgtg ggcttccatt
     7261 aaatcggcga gtttattcag taccgcttta cgtttagccg gagaagagag tgaccagtcg
     7321 ccgcgttcaa atacgccgcg tgctgcgctc accgcacggt cgatatcgac gctcttgccg
     7381 cgggcaattt tcgccagcgg tgcctgggtg actggatcaa cggtttcaaa ggtttcattt
     7441 tccgccgcag cagtatattc accgttaata aataagcggt tttcaatggc gagacttaac
     7501 gctttatcct gccagtaagc cagatgatga aaattcatta tgactcctgt tttacgtcta
     7561 tcagatatat gcagtttgtg aacgtcaggg cgcagagatc cccgggccgt atgcccgttt
     7621 atttctggcg acattcttta tatacacttc atccttcaag ccgcctctgc cttggctgcg
     7681 ttcgctcccc cgaatcactt acctgagtaa gctcatcggg attcgctcac ttgccgcctt
     7741 gatgcaactt gaatgatttt gtgtatagat tgccgggcgc attgcgctta cccggcttac
     7801 agaacaaaaa gattaaaacg tggtgggcgt atgggcgctg ataattcggc aaatacctgc
     7861 cgacgtatta ctgaaactgt gcgggatgcc ggtattaatg gcataacttt gacccgcgac
     7921 gaggtggtaa tcctgaccat taatcgtcag aacaatttca ccttccagta ctgtgcctat
     7981 ttcctcaccc tgatgcttaa ttctttcccc agtggttgtg cccggctggt acgtttcaaa
     8041 gatcatcgcc agcgtgcgat tcgggttacc gttatgaacc agcttcattg acacaccctg
     8101 actgcccatc tcaattaagt cgtcctgatt aatgacgacc tgcggctcat caggtttttc
     8161 cggctcggaa aagaattccg agagtgacag accatacacc ttcagcagct tttgcagcgt
     8221 actgatggca gggctgactt tatcttgttc tatcgtactg atagcactgt gagtcagccc
     8281 ggagagttcg gcggcacgac gttgtgaaag cccctgctgc tggcggattt ccgacaagcg
     8341 ttttcctggc gccagtccct catcactcat atttgcattt ccttaaactg tagtggtcag
     8401 agtcgctgtt tttcagcgat atggtgctga caagcggtga taaagccctc gaacaatata
     8461 cgcgaaagag cgtactcgct actgttccat tccgggtgcc actgtacgcc cagcgcaaaa
     8521 ggatgattga tgacgctaac cgcctcaact aagccatccg gcgagcgagc ttcaacacgc
     8581 aaccgtgggc taacgacctt cgccccttgt ccatgtagag agtttaccca aaagttgcta
     8641 cattcaggta acaacgcaga cagtaatccc ccctcttcaa cctgaacttc atgcgacggt
     8701 gcatattgct gttccaccgg cagttcggat cttcccgatg ttccagcaat tcaggctgtt
     8761 cgcacagctt gcgatgcaac gaaccaccgg ttgccaccac cagttcttgt aaaccccggc
     8821 agatggcgaa aatggggatg cgcctttcga gtgcggcatt aattatcgcc atgctcagaa
     8881 gatcacgccc gggatcggcg tcaggctcat cgccgttttc accatatagg tgcggctgca
     8941 cattgctggg actaccagga agataaatgc catcgagttt cggcaaaagt tgttcaagta
     9001 acgacggttc cgccagcgca tgtggtagcg caattggcaa gccgcctgcg tggatgatgg
     9061 cattcaggta cttttcttgc agagtctggg tcgcatgacc cttaagcctg ttcctgcaca
     9121 ttacgacacc gataaccgga ttgttcatta tatttttcat gctcaatctc acaaagtgga
     9181 ctaaattatc gccattactg cgctttaaat gacctttatg ttcaatattt tttcaatcta
     9241 gcagtgggtt ttcatttttg caaactaaat ttaacatttg gcaaacattt agtttgcata
     9301 cagattcgaa tggtggtcat tatattttac gctttgataa cgagcggaaa acaaaccaaa
     9361 ggcgaagaat catggaaacc aatatcgttg aagtagagaa ctttgttcag cagccagaag
     9421 agaggcgggg tagcgccttt acgcaggaag tgaaacgcta cctggagcgc tacccgaata
     9481 cgcaatatgt tgatgtttta cttactgatt tgaatggttg cttccgtgga aaacgtatcc
     9541 ctgtttcaag cctgaagaag ttggagaaag ggtgttattt cccggcctcg gtgtttgcaa
     9601 tggatattct gggcaacgta gtagaagaag cgggtctggg tcaggaaatg ggcgagccgg
     9661 atcgtacttg tgttcctgtt ctcggttcct taaccccttc tgccgccgat ccagagttta
     9721 tcggtcagat gctcctgacc atggtcgatg aagatggcgc tccctttgac gttgagccgc
     9781 ggaacgttct taaccgcctg tggcagcagc tacgccagcg cggattgttc ccggttgtag
     9841 cggtagagct ggagttctat ttactggatc gtcagcgcga cgctgaaggg tatctgcaac
     9901 cgccctgcgc gcccggcacc gataaccgca atacacaaag ccaggtttac tccgttgata
     9961 acctcaacca cttcgccgac gtgctcaatg atattgatga actggcgcag ttacagttaa
    10021 ttcccgccga cggtgcggtc gccgaagcct cgccgggtca gtttgaaatc aacctttacc
    10081 ataccgataa cgtgctggaa gcctgcgatg atgcgctggc gctaaaactc ctggtgcgtc
    10141 tgatggcaga aaagcataag atgcactcca cttttatggc gaagccgtat gaagagcacg
    10201 cgggcagcgg gatgcatatc catatcagta tgcaaaataa tcgtggcgag aatgtgcttt
    10261 ctgacacaga aggcgaagat tcgccgctgc tgaaaaagat gctcgccggg atgattgacc
    10321 tgatgccgtc gtcgatggcg ttgctggcac caaacgtgaa ctcgtatcgc cgcttccagc
    10381 cgggaatgta tgtgccgacg caggcgtcgt ggggccataa caaccgcacc gtcgccctgc
    10441 gtattccgtg cggcgaccgt cataatcacc gcgtggaata tcgcgtggcg ggtgccgatg
    10501 ccaacccata tctggtgatg gcagcgattt ttgccggtat tttgcatggc cttgataacg
    10561 agctgccgtt gcaggaagaa gtcgaaggca acgggctgga acaggaaggc ttacccttcc
    10621 cgattcgcca gagcgatgcc ctgggtgagt ttatcgagaa tgatcacctg cgccgctatt
    10681 taggcgaacg gttttgccat gtgtatcacg cctgtaaaaa tgatgagctg ttgcagtttg
    10741 agcgcctcat cacagaaaca gaaattgagt ggatgttgaa aaacgcatag taccccttgc
    10801 ggggttgttt catcgacctg agcggagcca ggcctgacat ttgctggtaa tccagacatt
    10861 tcccggatgt cgcgttatgg agcgcaggcg gcaacgggct tccgttaacg attaagactg
    10921 tgacgaggaa atgagatgat gccgatgatt aaatccccgc atggcgaggg aggctgcgta
    10981 tgcgcccctc ctgctactga ctggactccg tcccctttgc ttcccttgct aaacaggttt
    11041 gatttcaggt cgacacgacc gcaaacctta ttacgcaggg ggaggcagca attatggcta
    11101 ttaattcacc actgaatatt gctgcgcaac ccggcaaaac ccgtctgcga aaatcactga
    11161 aattgtggca ggtggtgatg atgggtctgg cctatctcac gccgatgacc gtatttgata
    11221 cttttggtat tgtctccggc attagcgacg gtcacgttcc ggcgtcctat ttgctggcgc
    11281 tggcgggcgt gctgtttacc gctatcagct acggcaaact ggttcgccag tttccggagg
    11341 ccggttcggc ctatacctac gcgcaaaagt cgattaaccc gcacgtcgga tttatggtcg
    11401 gctggtcatc gctgctggat tatctctttt tgccgatgat caacgtcttg ttggcgaaaa
    11461 tctatctctc cgccctcttc ccggaagtgc cgccgtgggt gtgggtagta accttcgtcg
    11521 ccattttaac cgccgcgaat ctgaagagca tcaacctggt cgctaacttc aataccctgt
    11581 ttgtactggt gcaaatctcc atcatggtgg tgtttatctt cctggtagtt cagggactgc
    11641 ataaaggaga aggcgttggc accgtctggt cacttcagcc gtttatcagc gagaacgcgc
    11701 acctgatccc gattattacc ggggcgacga ttgtctgttt ctccttcctc ggtttcgatg
    11761 cggtgaccac gctttcggaa gagacgccgg acgccgcacg cgtgatcccg aaagccatct
    11821 tcctgacggc ggtctacggt ggcgttatct ttatcgcggc gtcgttcttt atgcagctgt
    11881 tctttcccga tatcagccgc tttaaagatc cggatgccgc actgcctgaa attgcgctgt
    11941 acgtcggcgg caagctcttc cagtcgattt tcctctgcac cacgtttgtg aacacgttag
    12001 cctctggcct ggcttcacat gccagcgtgt cgcgtctgct gtatgtgatg gggcgtgaca
    12061 atgtgtttcc ggagcgcgtg tttggctatg tgcacccaaa atggcggact ccggcactca
    12121 acgtcattat ggtcgggatt gtcgcgttgt cggcgctgtt cttcgattta gttaccgcca
    12181 cagcgttaat taacttcggt gctctggtgg cgtttacctt cgtgaatctg tcggtgttta
    12241 atcatttctg gcggcgtaaa ggaatgaata aaagctggaa ggatcacttc cactatttgc
    12301 tgatgccgct ggttggcgcg ctgacggtgg gtgtgctgtg ggttaacctc gagtcaacgt
    12361 cactgacact cggtctggta tgggcttcgt taggcggcgc atatttatgg tatctgatcc
    12421 gccgctatcg caaagtgccg ttgtatgatg gtgacagaac gccggtgagt gaaacgtaat
    12481 agtcggatgc gcggcgcatt atcctgccgg agggtaatgc accgcgccat taactataaa
    12541 aagatgtatg acccggatca cgagtgctat catccgccct tatgcttagc gcattaaccc
    12601 caggggcaaa taatgaacca cgatatcccg ctaaaatatt ttgatattgc cgatgagtac
    12661 gcgaccgaat gcgcagagcc tgtcgcagac gctgaacgca caccgctggc ccactacttc
    12721 cagttactgc tcacccgttt gatgaacaat gaagagatca gcgaagaagc ccaacatgaa
    12781 atggctgctg aagcggggat taatcccgta cgcattgatg agatcgcaga gtttttgaat
    12841 caatggggta atgagtaatt atttaattgc agacgatcgg tcagtatcgt tgtccggata
    12901 aagcgttcac gccgcatccg gctaacaatg acacgcactg cagcgtgctt taatgggttt
    12961 ctcacgatcg taccgctctg ctcctcgcta agttgttctg tgagttatag ttatagagga
    13021 agcacgggta cgaatgttga acagatggcg acgccacctg ttcaacgacc aaccacacgg
    13081 ccctcattac gacccctgaa cacaaacggt aatggcaaat gtcattaaat attagtaaga
    13141 tagcctcttt acataaaatc ccttaatatt atgcgccagg tattatcgtc tcttttggtg
    13201 attgctggac ttgtgagtgg tcaggcaatc gccgcgcctg aatccccccc gcatgctgat
    13261 atccgcgaca gcggttttgt ctattgcgtc agcgggcaag tcaacacctt taacccatcc
    13321 aaagcgagca gtgggttaat tgtcgatacc cttgccgccc agttttatga tcgactgctg
    13381 gatgtcgatc cctataccta tcgcctgatg ccggaacttg ccgaaagctg ggaagtactc
    13441 gacaacggcg cgacctatcg cttccacctg cgtcgcgatg ttccgtttca aaaaaccgac
    13501 tggtttactc ccactcgtaa aatgaatgcc gacgatgtgg tgtttacctt ccagcgaatt
    13561 tttgaccgca acaacccgtg gcataacgtc aacggcagca acttccccta cttcgacagc
    13621 ctgcaatttg ccgataacgt gaaaagcgtc cgcaaactgg ataatcatac cgttgagttc
    13681 cgactcgccc agccggatgc ttcttttttg tggcacctcg caacccatta tgcttcggtc
    13741 atgtcggcag aatatgcccg gaagttagag aaagaagatc gccaggagca actcgaccgt
    13801 caaccggtcg gcaccggtcc gtatcagttg tcggaatacc gcgccgggca atttattcgc
    13861 ctacaacgtc atgatgactt ctggcgcggt aaaccgttaa tgccgcaggt agtggtggat
    13921 ttaggctccg gcggcaccgg acgtctgtcg aaactcctga ccggggaatg cgacgttctg
    13981 gcctggcctg ctgccagcca gctatccatt ttgcgtgacg acccgcgctt gcgtttaacg
    14041 ctgcgtcctg ggatgaacgt cgcctatctg gcatttaaca ccgccaaacc gccgctaaat
    14101 aatcccgctg tccgccatgc actggcactg gcgattaata accagcgcct gatgcaatcc
    14161 atctattatg gtacggctga aacggcggcc tctattttac cgcgcgcctc gtgggcctat
    14221 gacaacgagg ctaaaattac tgaatacaat ccggcgaaat cgcgcgaaca gttgaaggcg
    14281 ttggggctgg aaaacttaac gctgaaactg tgggtgccca cacgttcgca ggcgtggaac
    14341 cccagtccac tgaaaactgc cgaactgatt caggcggata tggcgcaggt tggcgtaaaa
    14401 gtggtgattg tgccggtaga aggtcgcttt caggaggcgc ggttgatgga tatgagccat
    14461 gatctgacgt tatccggttg ggcgacggac agtaacgacc cggacagttt cttccgtcct
    14521 ttactgagct gcgcggcaat tcattcacag accaacctcg cccactggtg cgatccgaaa
    14581 ttcgacagcg tgttgcgtaa ggcgctctcc tcgcagcagc tggcggcgcg tattgaagcc
    14641 tatgacgaag cgcagagtat tctggcgcag gaattgccca ttttgccgct ggcgtcgtca
    14701 ttgcgtttgc aggcctatcg gtacgatatc aaaggtctgg tacttagccc gtttggtaac
    14761 gcctcctttg ctggggtgta tcgcgagaaa caggatgagg tgaaaaaacc atgattatct
    14821 tcaccttacg ccgcattttg ttattgattg tcaccttgtt cctgctgacc ttcgttggct
    14881 tcagcttgag ctatttcacc cctcatgcgc cgttacaagg cgcgtcactg tggaatgcct
    14941 gggtgttctg gtttaacggc ctgatccact gggattttgg tgtttccagc attaacggtc
    15001 aaccgattgc cgaacagtta aaagaggtct tcccggcgac gatggaactg tgcatcctcg
    15061 ccttcggttt tgcgctgatt gttggcatcc ccgtggggat gattgccggg attacgcgcc
    15121 ataagtggca ggataacttg atcaacgcca tcgccttact gggcttttca atcccggtgt
    15181 tctggctggc gcttctgttg acgctgtttt gttcactcac gctaggttgg ttgcccgttt
    15241 cagggcgttt cgatctgctc tacgaagtga aaccgattac cggttttgcg ttgattgatg
    15301 cctggctttc ggactcacca tggcgggatg aaatgatcat gagcgcaatc cgccatatga
    15361 tattgcccgt gatcaccctg tcggttgcgc caacaactga agtgatccgc ctgatgcgta
    15421 tcagcactat cgaagtgtat gaccagaact atgtaaaagc ggcggcgacc cgcggtttgt
    15481 cgcgctttac tattttgcgt cgccacgttc tgcataacgc gttaccgccg gttattcctc
    15541 gcctgggctt acagttttcc accatgctga cgctggcgat gatcaccgaa atggttttta
    15601 gctggccggg tttagggcgc tggttaatta acgccatccg ccagcaggat tacgcagcca
    15661 tttccgccgg agtgatggtg tgtggctcac tggtcattat tgttaacgtg atttctgata
    15721 ttttgggtgc catggctaac cctctgaaac ataaggaatg gtatgcctta cgatagcgta
    15781 tacagcgaaa agcgcccgcc gggcacgctg cgtaccgcct ggcgcaaatt ttatagtgac
    15841 gcctctgcga tggtcggcct gtacggctgc gcggggctgg ctgtactgtg tatttttggc
    15901 ggctggtttg cgccttacgg catcgaccag caatttctcg gttatcaatt attgccgcca
    15961 tcatggtcgc gctatggcga agtttctttc ttcctgggga ctgacgacct cggacgcgat
    16021 gttttaagcc gtttactgag cggagctgcg ccaaccgtgg gtggcgcatt tgtggtgacg
    16081 cttgccgcga cgatctgtgg cctagtactg ggcaccttcg ccggggcgac acacggcctc
    16141 cgctcagcgg tgcttaacca tattctggat accttactgg cgatcccttc gctgctgttg
    16201 gcaattatcg ttgtagcgtt tgccggaccg agtttgtccc acgctatgtt tgctgtctgg
    16261 ctggcattgc tgccgcgtat ggtacgttcg atttacagca tggtgcatga cgaactggaa
    16321 aaagagtacg ttatcgccgc ccgtctggat ggcgcatcaa cgctgaatat tctctggttt
    16381 gctgtgatgc caaacatcac cgccgggctg gtcaccgaga tcacccgcgc actgtcgatg
    16441 gcaattctcg atatcgccgc gctgggcttt ctcgatctcg gcgcacaact cccctcgcct
    16501 gaatggggag cgatgctcgg tgatgcgctg gaactgattt atgtcgcccc gtggactgtc
    16561 atgctgccag gtgcggcaat tatgattagc gtgttgttgg ttaacctcct tggcgatggc
    16621 gttcgtcgtg cgattattgc gggggtggaa taatgccatt actcgatatt cgtaacctga
    16681 ccattgaatt taaaaccggt gatgagtggg ttaaagccgt cgaccgggta agtatgacct
    16741 taaccgaagg tgaaatccgc ggtcttgttg gtgaatccgg ttccggcaag agtttgattg
    16801 cgaaagcgat ttgtggggtg aataaagata actggcgtgt tattgctgac cgtatgcgtt
    16861 ttgatgatat cgatttgctg cgtctctccg cacgcgaacg gcgcaaactg gttggccata
    16921 acgtgtcgat gattttccag gaaccgcagt cgtgtcttga cccttcagaa cgtgtgggtc
    16981 gccagttgat gcaaaacatc ccagcctgga cctataaagg ccgttggtgg cagcgttttg
    17041 gctggcgcaa acgccgtgcc attgaactgc tgcaccgcgt ggggattaaa gatcacaaag
    17101 atgcgatgcg cagttttccc tatgagttga ccgaaggtga atgtcagaaa gtgatgatag
    17161 ccattgcact ggcgaatcaa ccgcgtctgc tgattgctga cgaaccgacc aactcaatgg
    17221 agccaacaac ccaggcgcaa atctttcgcc tgctgacgcg tctcaaccaa aacagcaata
    17281 ccactatttt gcttatcagc catgacttac aaatgcttag ccaatgggcg gataaaatta
    17341 acgtgcttta ctgcggtcaa acagtggaaa ccgcgccgag taaggagttg gtgacgatgc
    17401 cacatcatcc ttatacccag gcgctgatcc gcgcgatacc agacttcggc agcgcgatgc
    17461 cgcataaaag tcgcctcaat acgctgcccg gcgctatccc actgctggaa cagttaccga
    17521 ttggttgtcg tctggggcca cgttgcccgt atgcacaacg agaatgcatt gtgacgccac
    17581 gtttgacggg ggcgaaaaat catctctatg cctgtcattt cccgctgaac atggagaaag
    17641 agtgagatga tcgaaacgct gcttgaagtg cgtaatttaa gtaaaacgtt ccgctaccgg
    17701 accggctggt ttcgccgtca gaccgtagaa gcggtaaaac ccttgagctt tacgctacgt
    17761 gaaggccaga cactggcgat tattggcgag aatggttcgg gtaaatccac gctggcaaaa
    17821 atgctggcgg gaatgataga gcctaccagc ggcgagttat tgattgacga tcatccactg
    17881 cattttggcg attattcctt ccgcagtcag cgtattcgca tgatttttca ggatccttcg
    17941 acctcgttga atccccgtca acgtatctcg caaattctgg attttccact gcgcctgaac
    18001 accgacctgg aaccggaaca gcgtcgcaaa cagattattg aaacgatgcg tatggttggg
    18061 ctgctaccgg atcacgtcag ttactatccg catatgttgg cacccggaca aaaacagcgt
    18121 ctgggtctgg cgcgcgcgct gatattgcgc ccaaaagtca ttattgccga tgaagcactc
    18181 gcttcactgg atatgtcgat gcgttcgcag ttgattaatc tgatgctgga gttacaggaa
    18241 aaacagggca tttcgtatat ttatgttacc cagcatatcg gaatgatgaa gcacattagc
    18301 gaccaggtgc tggtgatgca tcagggcgag gttgtcgagc gaggcagcac cgcggatgtg
    18361 ctggcatcgc cgctgcatga actcaccaaa cggctgattg ccgggcactt tggcgaagca
    18421 ttgacagcgg atgcgtggcg taaagatcgc taattttctg aatcctcctt ccagattatc
    18481 cacctcattc tgacaagaga ttaaatcttg tcagaatgag gtgatggata aaataaaatc
    18541 aaatgcgcgt gatttaagac gcaatctcac tttgcaggaa cgaaagctct ggcgatatct
    18601 tcgcagccga cgttttggtg atttcaaatt tcgccgtcaa catccggtgg ggagctacat
    18661 tctcgatttt gcttgctgct cggcgcgcgt agtcgttgag ctggatggtg ggcagcatga
    18721 tttggcagtt gcctatgata ccaggcgcac tagctggctt gagtcgcagg gctggaccgt
    18781 gctgcgtttc tggaataacg agattgattg taatgaggag gcggtgctgg agattattct
    18841 gcaggaactg aaccgccgat caccctcacc ctgaaagggc gagggggccg accgagccga
    18901 atagctgttg tggtgaaaac atggagactg tgctggagaa tattcggcaa ggtctgaacc
    18961 atcccagcca tcgccataaa agggttaggg gctgtatgag cctgtttgtt gctggggtaa
    19021 caatatttgc acaatatggt cccctcgccc ctctggggag agggttagtg taaggggaaa
    19081 agcgcccacc ctgccgcagc ctgctccggt cggacctagc aactatagct actcacagcc
    19141 aggttgatta taataaccat ttatctgttc gtactgttta ctaaaacgac gaatcgcctg
    19201 attttcaggc acaacaagca tcaacaataa ggattaaagc tatgggtttt ctttccggta
    19261 agcgcattct ggtaaccggt gttgccagca aactatccat cgcctacggt atcgctcagg
    19321 cgatgcaccg cgaaggagct gaactggcat tcacctacca gaacgacaaa ctgaaaggcc
    19381 gcgtagaaga atttgccgct caattgggtt ctgacatcgt tctgcagtgc gatgttgcag
    19441 aagatgccag catcgacacc atgttcgctg aactggggaa agtttggccg aaatttgacg
    19501 gtttcgtaca ctctattggt tttgcacctg gcgatcagct ggatggtgac tatgttaacg
    19561 ccgttacccg tgaaggcttc aaaattgccc acgacatcag ctcctacagc ttcgttgcaa
    19621 tggcaaaagc ttgccgctcc atgctgaatc cgggttctgc cctgctgacc ctttcctacc
    19681 ttggcgctga gcgcgctatc ccgaactaca acgttatggg tctggcaaaa gcgtctctgg
    19741 aagcgaacgt gcgctatatg gcgaacgcga tgggtccgga aggtgtgcgt gttaacgcca
    19801 tctctgctgg tccgatccgt actctggcgg cttccggtat caaagacttc cgcaaaatgc
    19861 tggctcattg cgaagccgtt accccgattc gccgtaccgt tactattgaa gatgtgggta
    19921 actccgcggc attcctgtgc tccgatctct ctgccggtat ctccggtgaa gtggtccacg
    19981 ttgacggcgg tttcagcatc gctgcaatga acgaactcga attgaaataa tcattctgtt
    20041 ggtaaatatt gggcggcgtt ctgccgcccg ttatctctgt tatacctttc tgatatttgt
    20101 tatcgccgat ccgtctttct ccccttcccg ccttgcgtca ggataacgat ttcctttacg
    20161 accaaggagc gcccatggaa caacgccaca tcaccggcaa aagccactgg tatcatgaaa
    20221 cgcaatccag tactgcggag tatgacgttc tgcctctggt cccggaagcc gcaaaggtca
    20281 gcgatccctt tctgctcgac gtgatccttg atgaagaaac gctagctccc ttcctttcat
    20341 ggctggtccc tgcgcgcgtt cttgcagtgg aattgttccc tgaccagctt accgtgaccc
    20401 gttcacagac cttcaccgct tatgaacgct tgtctacggc cctgacggtt gctcaggttt
    20461 gcggcgtcca gcggttatgt aactactatt cggcgcgact tacgccgctc cccgggcctg
    20521 attcctctag ggaaagcaat cataggttgg cacaaatcac gcaatatgcc cgccaactgg
    20581 ctagctcgcc ttctattatc gacaaccgat cgcgccagca tctgaatgac gtcggtctta
    20641 ctgccaggga ctgtgtaatc attaaccaaa tcattggttt tattggcttt caggcgcgga
    20701 ccattgcgac atttcaggct tatctcgggc acccggtacg ctggttaccc ggtctggaaa
    20761 tacaaaacta cgccgacgcg tcactgtttg ctgatgaatc aatacgctgg cgaagcagct
    20821 atgaggtgga aaaactacct gaagagtaca caaaaagttc aacagcagaa ctttgccaac
    20881 tggccgaaac acactctctc caccctattt cactttccct tctcgaaagg ttgttaaaca
    20941 gtacacgggt taatacacag ccggataata agcttgcggc gttgttatgc gcgcggataa
    21001 atggcagtcc tgcttgtttt gccgcctgta tggattcatc aaatgaatat aaaaaaatca
    21061 gcccccttct gcgcaagggc gaaaatgaaa ttaaccaatg ggctgaccgt cattctgttg
    21121 agcacgctac cgttcaggcg atacaatggc tgacccgagc acccgatcgc tttagcaccg
    21181 cccagttcag ccctttactc gaacacgaac aatcatcaac gcagattatt aatctgctgg
    21241 tatggagcgg gctgtgtggc tggataaatc gcttaaaaat cgcgttgggt gagacatatt
    21301 aaccttgccg cgtcagacag attcgcgtaa aactgtcagc cgctctaatg gccaccaaaa
    21361 tagacaatta tgtttcagga caacccgctg ctagcgcagc ttaaacagca actgcattcc
    21421 cagacgccac gcgctgaagg ggtggtaaaa gccacagaaa aaggctttgg cttcctggaa
    21481 gtcgacgcgc aaaaaagtta tttcattccg ccgccgcaga tgaaaaaagt catgcatggc
    21541 gaccgaatta tcgcggtgat ccacagtgaa aaagaacgtg aatccgcaga gccagaagaa
    21601 ctggttgaac cgttcctgac tcgtttcgtg ggtaaagttc agggcaaaaa tgaccgtctg
    21661 gccatcgttc ctgatcatcc actcttaaaa gacgccattc cttgccgcgc agcccgtggc
    21721 ctgaaccacg agtttaaaga aggcgactgg gcggttgccg aaatgcgccg tcatccgctg
    21781 aaaggcgatc gttctttcta tgctgaattg acacaataca tcacttttgg tgacgaccac
    21841 tttgtaccgt ggtgggttac acttgcgcgc cataatctgg aaaaagaagc accagacggc
    21901 gtcgctaccg aaatgctcga tgaaggtctg gttcgtgaag atctgaccgc gctggatttt
    21961 gtcaccatcg acagtgccag cacagaagat atggatgacg cccttttcgc taaggcgttg
    22021 ccggatgaca aacttcagct gattgtggcg attgccgatc caaccgcgtg gattgctgaa
    22081 ggcagcaagc tggacaaagc cgcgaaaatt cgcgcattca ccaactatct gcctggcttc
    22141 aacatcccta tgctgcctcg cgagctttct gacgatctct gctcactgcg cgccaatgaa
    22201 gtccgcccgg tactggcatg ccgcatgacg ctctccgctg atggcgccat tgaagataat
    22261 atcgaattct ttgccgccac catcgaatcc aaagcaaagc tggtgtatga ccaggtttct
    22321 gactggctgg aaaataccgg tgactggcag cctgaaagtg aagcaattgc cgaacaagtc
    22381 cgtttgctag cgcaaatttg ccaacgccgc ggcgagtggc gtcataacca cgcactggtg
    22441 tttaaagatc gcccggatta ccgctttatt ctcggtgaaa aaggtgaagt gctggatatc
    22501 gtcgccgagc ctcgtcgcat tgccaaccgt atcgtcgaag aagcgatgat tgccgctaac
    22561 atttgtgcgg cccgcgtact gcgcgataag ctcggttttg gcatctataa cgtgcatatg
    22621 ggctttgatc cggcgaatgc cgacgcgctg gcagcgttgc tgaaaacgca cggtctgcat
    22681 gtcgatgccg aagaagtgct cacgctggac ggtttctgca aactgcgtcg tgaactggac
    22741 gcgcaaccaa ctggtttcct cgacagccgc attcgtcgct tccagtcatt tgctgaaatt
    22801 agcactgaac ccggtcctca ctttggcctc ggtctggaag catacgccac ctggacttcg
    22861 ccgatccgta aatatggcga catgatcaac caccgtctgc tgaaagcggt tatcaaaggc
    22921 gaaactgcga cgcgcccaca ggatgaaatc actgtccaaa tggccgagcg tcgccgtctc
    22981 aaccggatgg cagaacgtga tgttggtgac tggttatacg cacgcttcct gaaagacaaa
    23041 gccgggaccg acacccgttt cgcagcggaa attgtcgata tcagccgtgg cggcatgcgt
    23101 gtgcgtttgg ttgataacgg cgctatcgcc tttattccgg cacctttctt acacgctatg
    23161 cgcgatgaac tggtttgcag ccaggaaaac ggcactgtac aaattaaagg tgaaacggtt
    23221 tacaaagtaa ctgacgttat tgacgtcacc attgccgaag tccgcatgga aacccgcagc
    23281 attattgcgc gcccggtcgc gtaatctcct ttcacggcct attcctcatg gatgggccgt
    23341 ttatttcccc gctctacctt cgttatatcc aggcagattt tttaactgac tttcgtttga
    23401 aaactggcgt ttttccaaaa ctggattaca aataaatata taaaaaaaca atgcgtttag
    23461 ccgccgttaa tttcatgtaa gtca
//
LOCUS       DAJVUY010000056        23033 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.056, whole genome shotgun sequence.
ACCESSION   DAJVUY010000056 DAJVUY010000000
VERSION     DAJVUY010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23033
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.056"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..565)
                     /locus_tag="OQQ72_001946"
     CDS             complement(<1..565)
                     /locus_tag="OQQ72_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418580.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2011693.1"
                     /translation="MPHTIKKMSLIGLILMIFTSVFGFANSPSAYYLMGYSAIPFYIF
                     SALLFFIPFALMMAEMGAAYRKEEGGIYSWMNNSVGPRFAFIGTFMWFSSYIIWMVST
                     SAKVWVPFSTFLYGSDMTQHWRIAGLEPTQVVGLLAVAWMILVTVVASKGINKIARIT
                     AVGGIAVMCLNLVLLLVSITILLLNGGH"
     gene            complement(784..1761)
                     /gene="epmA"
                     /locus_tag="OQQ72_001947"
     CDS             complement(784..1761)
                     /gene="epmA"
                     /locus_tag="OQQ72_001947"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS2011694.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLNLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            2086..3894
                     /gene="frdA"
                     /locus_tag="OQQ72_001948"
     CDS             2086..3894
                     /gene="frdA"
                     /locus_tag="OQQ72_001948"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS2011695.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3887..4621
                     /gene="frdB"
                     /locus_tag="OQQ72_001949"
     CDS             3887..4621
                     /gene="frdB"
                     /locus_tag="OQQ72_001949"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS2011696.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4632..5027
                     /gene="frdC"
                     /locus_tag="OQQ72_001950"
     CDS             4632..5027
                     /gene="frdC"
                     /locus_tag="OQQ72_001950"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS2011697.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            5038..5397
                     /gene="frdD"
                     /locus_tag="OQQ72_001951"
     CDS             5038..5397
                     /gene="frdD"
                     /locus_tag="OQQ72_001951"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS2011698.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5460..6593
                     /locus_tag="OQQ72_001952"
     CDS             5460..6593
                     /locus_tag="OQQ72_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS2011699.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6682..7215
                     /gene="blc"
                     /locus_tag="OQQ72_001953"
     CDS             6682..7215
                     /gene="blc"
                     /locus_tag="OQQ72_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS2011700.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(7212..7529)
                     /gene="sugE"
                     /locus_tag="OQQ72_001954"
     CDS             complement(7212..7529)
                     /gene="sugE"
                     /locus_tag="OQQ72_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS2011701.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7711..7857)
                     /gene="ecnB"
                     /locus_tag="OQQ72_001955"
     CDS             complement(7711..7857)
                     /gene="ecnB"
                     /locus_tag="OQQ72_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS2011702.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7968..8093)
                     /gene="ecnA"
                     /locus_tag="OQQ72_001956"
     CDS             complement(7968..8093)
                     /gene="ecnA"
                     /locus_tag="OQQ72_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS2011703.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(8145..8711)
                     /gene="efp"
                     /locus_tag="OQQ72_001957"
     CDS             complement(8145..8711)
                     /gene="efp"
                     /locus_tag="OQQ72_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS2011704.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8753..9802
                     /gene="epmB"
                     /locus_tag="OQQ72_001958"
     CDS             8753..9802
                     /gene="epmB"
                     /locus_tag="OQQ72_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS2011705.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            10176..11045
                     /locus_tag="OQQ72_001959"
     CDS             10176..11045
                     /locus_tag="OQQ72_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS2011706.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
     gene            complement(11248..11601)
                     /locus_tag="OQQ72_001960"
     CDS             complement(11248..11601)
                     /locus_tag="OQQ72_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS2011707.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11739..13385)
                     /gene="groL"
                     /locus_tag="OQQ72_001961"
     CDS             complement(11739..13385)
                     /gene="groL"
                     /locus_tag="OQQ72_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCS2011708.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13429..13722)
                     /locus_tag="OQQ72_001962"
     CDS             complement(13429..13722)
                     /locus_tag="OQQ72_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCS2011709.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13998..15254
                     /gene="yjeH"
                     /locus_tag="OQQ72_001963"
     CDS             13998..15254
                     /gene="yjeH"
                     /locus_tag="OQQ72_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HCS2011710.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPCAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRSASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEISLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGIIT"
     gene            complement(15270..15746)
                     /gene="fxsA"
                     /locus_tag="OQQ72_001964"
     CDS             complement(15270..15746)
                     /gene="fxsA"
                     /locus_tag="OQQ72_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HCS2011711.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            16083..17519
                     /gene="aspA"
                     /locus_tag="OQQ72_001965"
     CDS             16083..17519
                     /gene="aspA"
                     /locus_tag="OQQ72_001965"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HCS2011712.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17637..18938
                     /gene="dcuA"
                     /locus_tag="OQQ72_001966"
     CDS             17637..18938
                     /gene="dcuA"
                     /locus_tag="OQQ72_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuA"
                     /protein_id="HCS2011713.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            19054..19392
                     /gene="cutA"
                     /locus_tag="OQQ72_001967"
     CDS             19054..19392
                     /gene="cutA"
                     /locus_tag="OQQ72_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HCS2011714.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            19368..21065
                     /gene="dsbD"
                     /locus_tag="OQQ72_001968"
     CDS             19368..21065
                     /gene="dsbD"
                     /locus_tag="OQQ72_001968"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HCS2011715.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNHALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            21102..21677
                     /locus_tag="OQQ72_001969"
     CDS             21102..21677
                     /locus_tag="OQQ72_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS2011716.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKQLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21784..21859
                     /locus_tag="OQQ72_001970"
     tRNA            21784..21859
                     /locus_tag="OQQ72_001970"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21817..21819,aa:Phe,seq:gaa)
     gene            22057..>23033
                     /locus_tag="OQQ72_001971"
     CDS             22057..>23033
                     /locus_tag="OQQ72_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS2011717.1"
                     /translation="MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRI
                     LGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIA
                     RRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI
                     ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGS
                     YKGQTVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGS
                     KMRTPHLVPLSKQAVAILTELQTWAGENGLIFTGAHDPRKPISENVMNAS"
BASE COUNT         5740 a         5943 c         5700 g         5650 t
ORIGIN      
        1 aatgcccacc atttaataac aaaatagtaa tgcttactaa cagcaatact aaattcagac
       61 acattactgc aataccgccc accgcagtaa tgcgggcaat tttattaatc ccctttgaag
      121 caacgacggt gaccagaatc atccatgcta ctgccagcag accaaccacc tgcgtaggct
      181 ccagtccggc aatacgccag tgctgggtca tgtcgctacc atagaggaat gttgagaacg
      241 gtacccaaac tttcgcggag gtactcacca tccagatgat ataagaggaa aaccacataa
      301 acgtaccaat gaaggcaaaa cgtggtccga cactattatt catccaggaa tagataccac
      361 cttcttcttt gcgataagca gctcccattt cagccatcat taaggcgaat ggaataaaga
      421 ataacaatgc agaaaatata taaaagggaa tcgcactata acccattaag taataagccg
      481 atgggctatt ggcaaatcca aatacggaag taaagatcat caatatgagt cctatcagac
      541 tcatcttttt tatcgtgtga ggcatgaaac catccttcat ttcagcgcgt gtataacacg
      601 tgcccactga actgcactgc gcaacattga gcaggcagcg taaaaaccaa tacagaattg
      661 atacccggat gatatcaaat atccagtctt aaattgtggc ctttaacgga aaaatgaaaa
      721 catatgctac agaatggcgc ttatcacgcc attcttcgct gttaattcag taatttttca
      781 gaattatgcc cggtcaacgc taaaggcgat gacttcagcc agtgtctccg cgcccagcgc
      841 caacatcacc agacgatcaa cacctaatgc cacgccggaa cagtcaggca taccgacttt
      901 caaggcttca atcagattct ggtcaatggg gtgctgcggc aaaccgcgcg ccgcgcgctt
      961 acggttatct tgttcaaagc gttgttgctg ctcacgggca tccgttaatt catggaaacc
     1021 attcgccagc tcaatacctt tataataaac ctcaaagcgt tcagcgaccc gatgatcttc
     1081 ggtactgatt tgcgccagtg atgcctggct ggctggaaag tggtacacaa aggtcggttt
     1141 ttctttgcca atatttggct ctacgccaaa ggtaaacagc aattgtagca acgtgtcgcg
     1201 gtcttcttcg gtatcagcaa cgttactcaa attcagtttc gctgcgactt cccgcagttg
     1261 cgttttgtcg gcagagagcg ggtcaatttc cagataacgc aagaaagctt gttgataaga
     1321 aaggctttct gctgccgggc agtccagcac ctgttgtaag agatcgtcca cctcgttcat
     1381 caaccggtac atatcatagt gcggtcgata ccactcaagc atagtgaact cagggttgtg
     1441 ataacgcccc atctcttcat tacggaagct gcggcacagc tggaataccg gcccacaacc
     1501 ggcaaccagc aggcgtttca tatggtattc cgggctggtc attaaccaga gattcatccc
     1561 ctgcgaatgc ccggggccaa cgaaacgtgt ctcaaacggg accaaatgaa tatcggttac
     1621 cgtcgcctgg ctcatacaag gcgtctccac ctccagcact ccacgatcag caaagaaacg
     1681 acggatctcc gccataatcg ccgcgcgttt taataagtta ggaatggatg cgctcggctg
     1741 ccaggatgcc gtttcgctca tagttaaatc tccagttttt gacaagggca cgaagtctac
     1801 tcgcaacgcg acggcgagac aaattttacg caggaatcaa acagcggtgg gcagtgacta
     1861 aaaaaagcac gatctgatgg tttagtaatt aaattaatca tcttcagtga taatttagcc
     1921 ctcttgcgca ctaaaaaaat cgatctcgtc aaatttcaga cttatccatc agactatact
     1981 gttgtaccta taaaggagca gtggaatagc gttcgcagac cgtaactttc aggcacttac
     2041 cctgaagtac ggggctgtgg gataaaaaca atctggagga atgtcgtgca aacctttcaa
     2101 gccgatcttg ccattgtagg cgccggtggc gcgggattac gtgctgcaat tgctgccgcg
     2161 caggcaaatc caaatgcaaa aatcgcacta atctcaaaag tatacccgat gcgtagccat
     2221 accgttgctg cagaaggggg ctccgccgct gtcgcgcagg atcatgacag cttcgaatat
     2281 cactttcacg atacagtagc gggtggcgac tggttgtgtg agcaggatgt cgtggattat
     2341 ttcgtccacc actgcccaac cgaaatgacc caactggaac tgtgggggtg cccatggagc
     2401 cgtcgcccgg atggtagcgt caacgtacgt cgcttcggcg gcatgaaaat cgagcgcacc
     2461 tggttcgccg ccgataagac cggcttccat atgctgcaca cgctgttcca gacctctctg
     2521 caattcccgc agatccagcg ttttgacgaa catttcgtgc tggatattct ggttgatgat
     2581 ggtcatgttc gcggcctggt agcaatgaac atgatggaag gcacgctggt gcagatccgt
     2641 gctaacgcgg tcgttatggc tactggcggt gcgggtcgcg tttatcgtta caacaccaac
     2701 ggcggcatcg ttaccggtga cggtatgggt atggcgctaa gccacggcgt tccgctgcgt
     2761 gacatggaat tcgttcagta tcacccaacc ggtctgccag gttccggtat cctgatgacc
     2821 gaaggctgcc gtggtgaagg cggtattctg gtcaacaaaa atggctaccg ttatctgcaa
     2881 gattacggca tgggcccgga aactccgctg ggcgagccga aaaacaaata tatggaactg
     2941 ggtccacgcg acaaagtttc tcaggccttc tggcacgaat ggcgtaaagg caacaccatc
     3001 tccacgccgc gtggcgatgt ggtttatctc gacttgcgtc acctcggcga gaaaaaactg
     3061 catgaacgtc tgccgttcat ctgcgaactg gcgaaagcgt acgttggcgt cgatccggtt
     3121 aaagaaccga ttccggtacg tccgaccgca cactacacca tgggcggtat cgaaaccgat
     3181 cagaactgtg aaacccgcat taaaggtctg ttcgccgtgg gtgaatgttc ctctgttggt
     3241 ctgcacggtg caaaccgtct gggctccaac tccctggcgg aactggtggt cttcggccgt
     3301 atggccggtg aacaagcgac agagcgtgca gcaactgccg gtaatggcaa cgaagaggca
     3361 attgaagcgc aggcagctgg cgttgaacaa cgtctgaaag atctggttaa ccaggatggc
     3421 ggcgaaaact gggcgaagat ccgcgacgaa atgggcctag caatggaaga aggttgcggt
     3481 atctaccgta cgccggaact gatgcagaaa accatcgaca agctggcaga gctgcaggaa
     3541 cgcttcaagc gcgtgcgcat caccgacacc tccagcgtgt tcaacaccga cctgctctac
     3601 accattgaac tgggccacgg tctgaacgtt gctgaatgta tggcgcactc cgcaatggca
     3661 cgtaaagagt cccgcggcgc acaccagcgt ctggacgaag gttgcaccga gcgtgacgac
     3721 gtcaacttcc tcaaacacac cctcgccttc cgcgatgctg atggcacgac tcgcctggag
     3781 tacagcgacg tgaagattac tacgctgccg ccagctaaac gcgtttacgg tggcgaagcg
     3841 gatgcagccg ataaggcgga agcagccaat aagaaggaga aggcgaatgg ctgagatgaa
     3901 aaacctgaaa attgaggtgg tgcgctataa cccggaagtc gataccgcac cgcatagcgc
     3961 attctatgaa gtgccttatg acgcaactac ctcattactg gatgcgctgg gctacatcaa
     4021 agacaacctg gcaccggacc tgagttaccg ctggtcctgc cgtatggcga tttgtggttc
     4081 ctgcggcatg atggttaaca acgtgccaaa actggcatgt aaaaccttcc tgcgtgatta
     4141 caccgacggt atgaaggttg aagcgttagc taacttcccg attgaacgcg atctggtggt
     4201 cgatatgacc cacttcatcg aaagtctgga agcgatcaaa ccgtacatca tcggcaactc
     4261 ccgcaccgcg gatcagggta ctaacatcca gaccccggcg cagatggcaa agtatcacca
     4321 gttctccggt tgcatcaact gtggtctgtg ctacgccgcg tgcccgcagt ttggcctgaa
     4381 cccagagttc atcggtccgg ctgccattac gctggcgcat cgttataacg aagatagccg
     4441 cgaccacggt aagaaggagc gtatggcgca gttgaacagc cagaacggcg tatggagctg
     4501 tactttcgtg ggctattgct ccgaagtctg cccgaaacac gtcgatccgg ctgcggccat
     4561 tcagcagggc aaagtagaaa gttcgaaaga ctttcttatc gcgaccctga aaccacgcta
     4621 aggagtgcaa catgacgact aaacgtaaac cgtatgtacg gccaatgacg tccacctggt
     4681 ggaaaaaatt gccgttttat cgcttttaca tgctgcgcga aggcacggcg gttccggctg
     4741 tgtggttcag cattgaactg attttcgggc tgtttgccct gaaaaatggc ccggacgcct
     4801 gggcgggatt cgtcgacttt ttacaaaacc cggttatcgt gatcattaac ctgatcactc
     4861 tggcggcagc tctgctgcac accaaaacct ggtttgaact ggcaccgaaa gcggccaata
     4921 tcattgtaaa agacgaaaaa atgggaccag agccaattat caaaagtctc tgggcggtaa
     4981 ctgtggttgc caccatcgta atcctgtttg ttgccctgta ctggtaagga gcctgagatg
     5041 attaatccaa atccaaagcg ttctgacgaa ccggtattct ggggcctctt cggggccggt
     5101 ggtatgtgga gcgcaattat tgcgccggtg atgatcctgc tggtgggtat tctgctgcca
     5161 ctggggctgt ttccgggtga tgcgctgagc tacgagcgcg ttctggcgtt cgcgcagagc
     5221 ttcattggtc gcgtattcct gttcctgatg atcgttctgc cgctgtggtg tggtttacac
     5281 cgtatgcacc acgcgatgca cgatctgaaa attcacgtgc ctgcgggcaa atgggttttc
     5341 tacggtctgg ctgctatcct gacagttgtc acgctgattg gtatcgttac aatctaacgt
     5401 atcgccaatg taaatccggc ccgcctatgg cgggccgttt tgtatggaaa ccagacctta
     5461 tgttcaaaac gacgctctgc gccttattaa ttaccgcctc ttgctccaca tttgctgccc
     5521 ctcaacaaat caacgatatt gtgcatcgca caattacccc gcttatagag caacaaaaga
     5581 tccccggtat ggcggtggcg gtaatttatc agggtaaacc ttattacttt acctggggct
     5641 atgcggacat cgccaaaaag cagcccgtca cacagcaaac gttgtttgag ttaggttcgg
     5701 tcagcaaaac atttacgggc gtgcttggtg gcgatgctat tgctcgaggg gaaatcaagt
     5761 taagcgatcc cgcaacaaaa tactggcctg aacttaccgc taaacagtgg aatgggatca
     5821 cactattaca tcttgcgacc tacaccgctg gcggcctgcc attgcagatg ccggatgaag
     5881 tgaaatcctc aagcgacttg ctgcgcttct atcaaaactg gcagcctgca tgggctccag
     5941 gaacacaacg tctgtatgcc aactccagta tcggtttgtt cggcgcactg gctgtgaagc
     6001 cgtctggttt gagttttgag caggcgatgc aaactcgtgt cttccagcca ctcaaactca
     6061 accatacgtg gattaatgta ccgcccgcag aagaaaagaa ttacgcctgg ggatatcgcg
     6121 aaggcaaggc agttcatgtt tcgccagggg cgttagatgc tgaagcttat ggtgtgaagt
     6181 cgaccattga agatatggcc cgctgggtgc aaagcaattt aacccccctt gatatcaatg
     6241 agaaaacgct tcaacaaggg atacaactgg cacaatctcg ctactggcaa accggcgata
     6301 tgtatcaggg cctgggctgg gaaatgctgg actggccggt caatcctgac agcatcatta
     6361 acggcagtga caataaaatt gcactggcag cacgcccggt aaaagcgatt aagcccccaa
     6421 ctcctgcagt acgcgcatca tgggtacata aaacgggggc gaccggcgga tttggtagct
     6481 atgtcgcgtt tattccagaa aaagagctgg gtatcgtgat gctggctaac aaaaactatc
     6541 ccaatccagc gagagtcgcc gccgcctgtc agattctcaa cgctctacag taaaatttca
     6601 tcgggtccga attttcggac cttttctgcg cttttccttg ctgtcatcta cacttagaaa
     6661 aaaaccagta aggaaacatt tatgcgcctg ctccctctcg ttgccgcagc gacagctgca
     6721 tttctggtcg ttgcctgcag ttctcctacg ccgccgcgtg gcgtgacagt agtgaataat
     6781 ttcgacgcta aacgctatct cggtacctgg tatgagattg cccgttttga tcaccgtttt
     6841 gaacgtggac tggaaaaagt caccgcaaca tacagtctgc gtgatggcgg cggcctgaat
     6901 gtcatcaata aaggctataa ccctgacaga gaaatgtggc agcagagtga agggaaagcg
     6961 tactttaccg gcgcaccaac acgcgctgcg ctgaaagtgt cattctttgg tcctttctat
     7021 ggcggttata acgtcattgc acttgatcgg gaataccgcc atgcgctggt ttgcggcccg
     7081 gaccgcgact acctgtggat actctcccgc acgccaacca tttctgacga agtgaaacag
     7141 gagatgctgg cagtcgcgac ccgggaaggg tttgatgtca gtaagtttat ttgggtacag
     7201 cagcccggta gttagtgagt gctgagtttc agaccaataa tccccaatac gattaacgcc
     7261 agactcgcca ggcgcatcgg gttagcggac tcaccgagca gcacaatgcc ggtgatagcc
     7321 gcgccgactg cgccaatacc cgtccacacg gcataagccg tccctactgg taacgatttc
     7381 atcgcccagg caagtagcgc catactgaca atcatcgccg tcacggtaat aacactcggc
     7441 gtcaaacgac taaagccgtg ggtatatttc aggccaacgg cccataccac ttccagcaga
     7501 ccagcaataa ctaagataat ccaggacata tcaggctccg gagaattggg gccgtccccg
     7561 gtgaaaagac gcgtttgcag gtcgtcctgc aaagctgatg gttgaacgga tattttgcca
     7621 ggtggcaggg gaatttcaac tattacctta gtgactatcg cagaaaaaac aaacggcacg
     7681 acacagctgt cgtaccgtta ttgcttattg ctattgctgc gctttcgttg ctgcgccaga
     7741 aatcgcgtta ccgccatcag aaatgtcttc accaacgcca cgcgtggtgt tgcaggcagt
     7801 taatactgtt gaaagcacca gaacagaaaa gatcgctgca attgtcttct tcaccataac
     7861 gtcttccttt taggtaatgt tatttatgtt tgcctatagc aaattaataa tagacaacat
     7921 cgccaaaaat gacggaaatc tgatgatttt tcggaagaga agaaaaatta gctggcagcg
     7981 cgagagatgg agttgccgag atgtttgatg tcttcgccga aaccgcgagc ggtgttacag
     8041 cccgtgagca gcgtactggc aagcaaaaca agaacgataa ggcgtttcat catctctgac
     8101 ctgaataagt gatggtgcag cctgcaggcc gcaccacaac cgcattactt cacgcgagag
     8161 acgtattcac cagagcgggt atccactttg atgacttcgc cgatttgtac gaacagcgga
     8221 accttaacca cagcgccagt agacagggta gccggtttgc cgccagtacc tgcggtatca
     8281 cctttcaggc ccggatcggt atcaacgatt tccagttcaa cgaagttcgg cggagtaacg
     8341 gagatcggct gaccattcca cagagttacg atacactctg cctgatccag cagccattta
     8401 gcgttatcgc caattgcttt tgcatcagca gacagctgct cgaaagtttc gttgttcatg
     8461 aagtgccaga actcaccgtc gttgtacagg taagtcaggt tcatatcgac aacatcagcg
     8521 ccttcagcgg aatcagtaga tttgaaggtt ttttctacgc gagtaccggt cagcagacga
     8581 cgcagtttaa cgcgagcaaa tgcctggcct ttacccggtt ttacgaattc actcgcttca
     8641 accgcgtaag gttcgccgtc taacatgatt ttaagaccag cacgaaaatc gttgctatag
     8701 tacgttgcca taaggccctc tgaaatttgt taattggtag ctaagccaca aaatggcgca
     8761 tattgtaacc ctaaataccc catccagaga agattggtta acgcaacttg ccgatgttgt
     8821 gaccgatcct gatgaacttc tgcgtctttt gaatatagac gcggacgaaa aactgttggc
     8881 cggacgcagc gccaaaaagc tgtttgccct gcgtgtgccc cgctcattta tcgatcgcat
     8941 ggagaaaggc aatccggacg atcctctttt gcgtcaggta cttacctcgc aagatgagtt
     9001 tgtcgtcgcg tccggattct ccaccgaccc actggaagaa cagcacagcg tagtgcctgg
     9061 tttgttgcat aaataccaca accgggcgct tttgctggtc aaaggcggct gcgcggtaaa
     9121 ttgccgctat tgcttccgtc gccacttccc ctatgccgaa aatcagggca acaagcgtaa
     9181 ctggcagact gcacttgagt atgttgctgc gcatccggaa ctggacgaga tgattttctc
     9241 cggcggcgat ccgctgatgg cgaaagatca cgagctggac tggttgctca cacaactgga
     9301 agccatcccg catatcaaac gtctgcggat tcacagtcgt ctgccgattg tgatcccggc
     9361 acgcatcaca gatgcgctgg ttgaacgctt ttcacattct acgctgcaaa tcctgctggt
     9421 gaatcacatc aaccatgcca atgagataga tgaaacattc cgtcaggcga tggctaagtt
     9481 gcgccgggta ggcgttactt tgctgaacca gagcgttctg ttacgtgatg tgaacgataa
     9541 cgcacaaacg ctggcaaacc tgagtaatgc gttgttcgat gccggcgtga tgccgtatta
     9601 cctgcatgtg ctcgataaag tacagggcgc agcgcatttt atggtgagtg atgacgaagc
     9661 acggcagatt atgcgtgagt tgctgacatt ggtgtcggga tatctggtgc cgaaactggc
     9721 gcgagaaatt ggcggcgaac ccagcaaaac gccgctggat ctccagctac gccagcagtt
     9781 actgattaaa cagggaagtt aaacattaaa attgcctgat gcgctacgct tatcaggcct
     9841 acatcgtgca ttgaaattga atggatttgc aatgaactgt aggccggata aggcgtttac
     9901 gccgcatccg gcaagagcaa caaacgcaag tacagcaacc tgtcattaaa ctgagaaatt
     9961 taatctttgc ccgttgcata acctttaatt attcatatgc attgctgttg ttacttttta
    10021 tatagctaac accaataatt aacctttctt ttctgtttat atagagtgag cacggctatt
    10081 tatgttattt taacaactat tactaccaag cccatttatc tggcttataa attaaaatta
    10141 attatttaat tgagaaatgg ttagggagaa cctacatggc cataagcatc aagggtgtta
    10201 ataccggtgt tattcgcaag agtaataatt tcattgcact ggcgctgaaa attaaagaac
    10261 ctcgcaataa agaatcgttg ttctttatgt ctgtcatgga actgcgcgac ctgctgattg
    10321 cgctggaaag tcgtctgcat caaaagcata aactggatgc tgctgcacgc cttcagtatg
    10381 agcaagctcg cgataaagtc attaagaaaa tggcagaaaa catcccagaa attctggttg
    10441 atgagcttaa aaatgccgat attaatcgtc gggttaacac gctggaactt accgataatc
    10501 aaggcgaaaa tcttaccttc gtattaacgc tacatgacgg tagcaaatgt gagttagtcg
    10561 tcaatgagtt gcagattgaa atgctagcgc gagcaatcat tcatgcaatt aataatgcgg
    10621 aaatgcgtga actggcatta cgtattacct cactgttaga tttcctgccg ttatatgacg
    10681 ttgactgcca ggaaaatggc aatctggaat atgacaccta ttcccaaccg gaatggaaac
    10741 ataacttgtt cgaccattat ctggcggtgc tttaccgctt taaagatgaa agtggcaaag
    10801 aacaatttag cggcgcagtg gtgaaaacgc gtgaagcaac gccgggtaaa gaagtagagg
    10861 cgatcactcg ccgaatgctt gatttcagcc cacgactgaa aaaactcgcg ggtgtgccat
    10921 gtcaggtcta tgttcgcacc gtagcggcga ataacgccca accgctaacc caggatcaat
    10981 gcttacgcgc gctgcatcac ttacgtgttc aatccaccag caaaactgca ccacaggcga
    11041 aataatctca tctttgctaa tgcgaggctg gagccatcca gcctgaaatg actgataacg
    11101 tgatcgttgg tcatgccgga tgcggcgtaa acgccttatc cggcctacaa attctcaagc
    11161 attcaatcag ttgcaatgcc tgctgtaggc ctgataagcg aagcgcatca ggcaataata
    11221 cgtttgtcac ccagcctctg gatcacatca gttcgggcac ttataaacct gaccgataat
    11281 ctggctatcc gtcgggacaa aactggacaa cattccctgc gacgggctgc tgatgccata
    11341 aatcacgtta ccgcccattg cagccgcctg gttgcgcaga tcgtttgctg cgccgcgcat
    11401 agaaccgccc tcttctccgt gttgcccgga aagccagttg ctttgcttac ctgtcgcagt
    11461 accaatcagc tggcactctg cgcctggctg ctcgtccaca atgcgtacac tctgaccggc
    11521 agcactcaat tcgttgctgg agctacaacc cgccatcagt agcgcggcac cgacaatccc
    11581 tgctaagtat tttacgtgca tgttattccc cataatcaat gagctggacg ccactcgcgt
    11641 cgtccgtgtc tgaatcttat actagaaaga tgaccaaaag aaaaaccccc agacatttct
    11701 gcccgggggt ttgtttattt ctgcgaggtg cagggcaatt acatcatgcc gcccatgcca
    11761 cccatgccgc ccataccgcc agcagcgcct aagtcagctg catcgttttt cggcaggtcg
    11821 gtaaccatgc actcggtggt gatcatcagg ccagccacag aagccgcgta ctgcagagca
    11881 gaacgggtta ctttggttgg atccaagata cccatgtcga tcatgttgcc gtattcttcg
    11941 gttgctgcgt tgtaaccgta gttgccgtcg ccgcctttaa cagtgttagc aacaacagac
    12001 ggttcttcgc cgcagttcaa tacgatctga cgcagcggag cttccattgc acgcagtgca
    12061 actttgatac ccacgttctg gtcttcgttc tgaccacgca ggtcagccag tttagacgct
    12121 acgcggatca gcgcaacacc accaccagca accacgcctt cttctaccgc agcacgggtc
    12181 gcgtgcaggg catcttcaac gcgtgctttt ttctctttca tttcaacttc ggtagcagca
    12241 cctactttga taactgcaac gccgcctgcc agtttcgcta cgcgctcctg cagtttttca
    12301 cggtcgtagt cagaagttgc ttcttcaatc tgctgacgga tctgagcaac acggccctgg
    12361 attgcagctt cttcacccac gccatcaatg atggtggtgg tgtctttgtt gatcacaaca
    12421 cgtttagcct gacccaggtc ttccagggtt gctttttcca gctccatacc gatctcttca
    12481 gagattacgg taccgccagt cagggttgcg atatcctgca gcatagcttt acggcgatcg
    12541 ccgaagcccg gagctttaac cgcagcaact ttcacgatgc cacgcatggt gttaacaacc
    12601 agagttgcca gcgcttcgcc ttcaacatct tcagcgatga tcagcagcgg tttacctgct
    12661 ttagcaacgg cttccagaac cggcagcatt tcgcggatgt tggagatttt cttgtcagcc
    12721 agcaggatga acgggctttc cagttctact gcgccagttt ccggcttgtt gatgaagtaa
    12781 ggagacaggt agccacggtc gaactgcata ccttcaacca cgtccagttc gtcctgcaga
    12841 ccggtaccgt cttcaacggt gataacgcct tctttaccga ctttgtccat cgcttcagcg
    12901 atcagtttac ctacggtttc gtcggagtta gcggagatgg taccaacctg agcaatcgct
    12961 ttagagtcag agcatggtac ggacagcgct ttcagttctt caactgcagc ggtaacagct
    13021 ttgtcgatac cacgtttcag gtccatcggg ttcatgcccg cagcaactgc tttcagaccc
    13081 tcagtgatga tagcctgagc cagtacggtt gcagtggtgg taccgtcgcc tgcagcgtcg
    13141 ttcgctttag aggcaacttc tttcaccatc tgcgcaccca tattttcgaa cttgtcttcc
    13201 agttcgattt cacgagcaac ggaaacacca tctttggtga tggtcggtgc accgaaagat
    13261 ttatccagaa ctacgttacg gcctttcgga ccgagggtaa ctttcactgc atctgccagt
    13321 acgtttacgc cgcgcagcat tttcacacga gcgtcgttac cgaattttac gtctttagct
    13381 gccattatct ttattcctta aattcgtatg ttcagtgtcg tgcgaggatt acgcttcaac
    13441 aattgccaga atgtcgcttt cggacatgat caacacttct tcattgtcga tcttctcaga
    13501 tttcacaccg tagccatcgt tgaaaataac gatgtcgcca actttcacat ccagcggctt
    13561 cacttcgcca ttttcaagga tacggccatt gccgacagcc agcacttcgc cgcgggtgga
    13621 tttagccgct gcagagccgg tcagaacgat gccgccagca gatttagttt caacttcttt
    13681 acgcttgacg atcacgcgat catgcaatgg acgaatattc attgataact ctcctttgag
    13741 aaagtccgta tctgttatgg gtgacgccgg agcttacgtg gtttcccggc tggtgaccag
    13801 agaaatgggg atgaggattc gccccttcaa gggggaaaaa gaaaaaaaat tctgatcagc
    13861 acaaaatcgg gtgaaaaccc tgattcacct cacatttcat cgcaatttct tcatcgccgt
    13921 cataagcgaa tctgattgtg ctaccatcga aaatctacgc agttgcccaa aatttgggcg
    13981 caatcggata tcaacccatg agtggactca aacaagaact ggggctggcc cagggcattg
    14041 gcctgctatc gacgtcatta ttaggcaccg gcgtgtttgc cgttcctgcg ttagctgcac
    14101 aggtagcagg caataacagc ctgtgggcgt ggcccgtttt gattatctta gtgttcccga
    14161 ttgcgattgt gtttgcgatt ctgggtcgcc actatccctg cgcaggcggt gtcgcgcact
    14221 tcgtcggtat ggcgtttggt tcgcggcttg agcgagtcac cggctggttg tttttatcgg
    14281 tcattcccgt gggtttgcca gccgcgctac aaattgccgc cgggttcggc caggcaatgt
    14341 ttggctggca tagctggcaa ctgttgttgg cagaactcgg tacgctggcg ctggtgtggt
    14401 atatcggtac tcgcagtgcc agttccagtg ctaatctaca aaccgttatt gccggactta
    14461 tcgtcgcgct gattgtcgct atctggtggg cgggcgatat caaacctgcg aatatcccct
    14521 tcccggcacc tggtaatatc gaacttaccg ggttatttgc tgcgttatca gtgatgttct
    14581 ggtgttttgt cggtctggaa gcatttgccc atcttgcctc ggaatttaaa aatccagagc
    14641 gtgattttcc tcgcgcattg atgattggtc tgctgctggc aggattagtc tactggggct
    14701 gtacggtagt cgtcttacac ttcgacgcct atggtgaaaa aatggcggcg gcagcatcgc
    14761 ttccaaaaat tgtagtgcaa ctgttcggtg taggagcgtt atggattgcc tgcgtgattg
    14821 gctatctggc ctgctttgcc agtctcaaca tttatataca gagcttcgcc cgcctggtct
    14881 ggtcgcaggc gcaacataat cctgaccact acctggcacg cctctcttct cgccatatcc
    14941 cgaataatgc cctcaatgcg gtgctcggct gctgtgtggt gagcactttg gtgattcatg
    15001 ctttagagat cagtctggac gctcttatta tttatgccaa tggcatcttt attatgattt
    15061 atctgttatg catgctggca ggctgtaaat tattgcaagg acgttatcga ctactggcgg
    15121 tggttggcgg gctgttatgc gttctgttac tggcaatggt cggctggaaa agtctctatg
    15181 cgctgatcgt gctggcgggg ttatggctgt tgctgccaaa acgaaaaacg ccggaaaatg
    15241 gcataatcac ataatccggc gtttcgacat taatcctggc gatcgtcttt atgatcaagg
    15301 cggtcgcgct catcatcctt tcgctggtac tcaccatcaa aagtattacc gccaccggtc
    15361 ccggcgctaa aaccgccgcc tggcatacga gaaaagcgca aatgcggcat caacttcact
    15421 gtcagatgct tttgcaccgg cggtaataaa agcagaagac cgaggaagtc ggtgaaaaag
    15481 cccggtaata aaagcagcaa accggcaatg atcagcgaaa cacttttaat catctccgcc
    15541 gctgggtttt cacccgccgc cattttttgc tgcatcagca cgaaattctt aaagccctgg
    15601 ttacgtacca gtgacatccc gataactgac gtgaatataa ccagcacgag ggtcagcaat
    15661 acccccaata catgggcaac ctgaataaag attgaaatct caatatagac ataaaggaaa
    15721 atggcaataa aaggtaacca gcgcaaaggt ttctcctgta atagcagccg gtaaaacccg
    15781 gctacctgaa tgggttgcga atcgcgttca gcttatattg tggtcattag caaaatttca
    15841 agatgtttgc gcaactattt ttggtagtaa tcccaaagcg gtgatctatt tcacaaatta
    15901 ataattaagg ggtaaaaacc gacacttaaa gtgatccaga ttacggtaga aatcctcaag
    15961 cagcatatga tctcgggtat tcggtcgatg caggggataa tcgtcggtcg aaaaacattc
    16021 gaaaccacat atattctgtg tgtttaaagc aaatcattgg cagcttgaaa aagaaggttc
    16081 acatgtcaaa caacattcgt atcgaagaag atctgttggg taccagggaa gttccagctg
    16141 atgcctacta tggtgttcac actctgagag cgattgaaaa cttctatatc agcaacaaca
    16201 aaatcagtga tattcctgaa tttgttcgcg gtatggtaat ggttaaaaaa gccgcagcta
    16261 tggcaaacaa agagctgcaa accattccta aaagtgtagc gaatgccatc attgccgcat
    16321 gtgatgaagt cctgaacaac ggaaaatgca tggatcagtt cccggtagac gtctaccagg
    16381 gcggcgcagg tacttccgta aacatgaaca ccaacgaagt gctggccaat atcggtctgg
    16441 aactgatggg tcaccagaaa ggtgaatatc agtacctgaa cccgaacgac catgttaaca
    16501 aatgtcagtc cactaacgac gcctacccga ccggtttccg tatcgcagtt tactcttccc
    16561 tgattaagct ggtagatgcg attaaccaac tgcgtgaagg ctttgaacgt aaagctgtcg
    16621 aattccagga catcctgaaa atgggtcgta cccagctgca ggacgcagta ccgatgaccc
    16681 tcggtcagga attccgcgct ttcagcatcc tgctgaaaga agaagtgaaa aatatccaac
    16741 gtaccgctga actgctgctg gaagttaacc ttggcgcaac agcaatcggt actggtctga
    16801 acacgccgaa agagtactct ccgctggcag tgaaaaaact ggctgaagtc actggcttcc
    16861 catgcgtacc ggctgaagac ctgatcgaag cgacctctga ctgcggcgct tatgttatgg
    16921 ttcacggcgc gctgaaacgc ctggctgtga agatgtccaa aatctgtaac gacctgcgct
    16981 tgctctcttc tggcccacgt gccggcctga acgagatcaa cctgccggaa ctgcaggcgg
    17041 gctcttccat catgccagct aaagtaaacc cggttgttcc ggaagtggtt aaccaggtat
    17101 gcttcaaagt catcggtaac gacaccactg ttaccatggc agcagaagca ggtcagctgc
    17161 agttgaacgt tatggagccg gtcattggcc aggccatgtt cgaatccgtt cacattctga
    17221 ccaacgcttg ctacaacctg ctggaaaaat gcattaacgg catcactgct aacaaagaag
    17281 tgtgcgaagg ttacgtttac aactctatcg gtatcgttac ttacctgaac ccgttcatcg
    17341 gtcaccacaa cggtgacatc gtgggtaaaa tctgtgccga aaccggtaag agtgtacgtg
    17401 aagtcgttct ggaacgcggt ctgttgactg aagcggaact tgacgatatt ttctccgtac
    17461 agaatctgat gcacccggct tacaaagcaa aacgctatac tgatgaaagc gaacagtaat
    17521 cgtacagggt agtacaaata aagaaggcac gtcagatgac gtgccttttt tcttgtgaac
    17581 agtaacttaa aaacaacaac ctaatatcaa cttgttaaaa aacaaggaag gctaatatgc
    17641 tagttgtaga actcatcata gttttgctgg cgatcttctt gggcgccaga ttggggggaa
    17701 taggtattgg ttttgcaggc ggattggggg tgctggttct tgccgctatt ggcgttaaac
    17761 ccggtaacat cccgttcgat gtcatttcca ttatcatggc ggttatcgcc gctatttctg
    17821 ccatgcaggt tgctggcggt ctggactatc tggttcatca gacagaaaag ctgctgcgcc
    17881 gtaacccgaa atacatcacg atcctcgcac ctatcgtgac ctatttcctg acaatctttg
    17941 ctggtactgg caacatctct ctggcgacac tgccagttat cgctgaagtt gcgaaggaac
    18001 aaggcgttaa accttgccgt ccgctctcta ctgcagtggt atccgcgcag attgcgatca
    18061 ccgcatcgcc aatctcagcg gcagtggttt acatgtcttc cgtgatggaa ggtcatggca
    18121 tcagctacct ccatctgctc tccgtggtca tcccgtccac cctgctggcg gttctggtga
    18181 tgtcctttct ggtcactatg ctgttcaact ccaaactctc tgacgatccg atttatcgca
    18241 agcgtctgga agagggcctg gttgaactgc gcggtgaaaa gcagattgaa atcaaatccg
    18301 gtgcaaaaac gtccgtctgg ctgttcctgc tgggcgtagt tggcgtggtt atctatgcaa
    18361 tcatcaacag cccaagcatg ggtctggttg aaaaaccgct gatgaacacc accaacgcaa
    18421 tcctgatcat catgctcagc gttgcaactc tgaccaccgt tatctgtaaa gtcgataccg
    18481 acaacatcct caactccagc accttcaaag caggtatgag cgcctgtatt tgtatcctgg
    18541 gtgttgcgtg gctgggcgat actttcgttt ccaacaacat cgactggatc aaagataccg
    18601 ctggtgaagt gattcagggt catccgtggc tgctggccgt catcttcttc tttgcttctg
    18661 ctctgctgta ctctcaggct gcaaccgcaa aagcactgat gccgatggct ctggcactga
    18721 acgtttcacc gctgaccgct gttgcttctt tcgctgcggt gtctggtctg ttcattctgc
    18781 cgacctaccc gacgctggtt gctgcggtac agatggatga cacgggtact acccgtatcg
    18841 gtaaattcgt cttcaaccat ccgttcttca tcccgggtac tctgggtgtt gccctggccg
    18901 tttgcttcgg cttcgtgctg ggtagcttca tgctgtaatg atcaatcgcg gggcgttcac
    18961 gccccgcttt ctttcccgcc gactaacatc cttcccccgt acgttgtata gtgacctctc
    19021 tcttgcggtt ccatctgttc ttgcgaggtg tttatgcttg atgaaaaaag ttcgaatacc
    19081 gcgtctgtcg tggtgctatg tacggcacca gatgaagcga cagcccagga tttagctgcc
    19141 aaagtgctgg cggaaaaact ggcggcctgc gcgaccttga tccccggcgc tacctctctc
    19201 tattactggg aaggtaagct ggagcaagaa tacgaagtgc agatgatttt aaaaactacc
    19261 gtatctcacc agcaggcact gctggaatgc ctgaagtctc atcatccata tcaaaccccg
    19321 gaacttctgg ttttacctgt tacacacgga gacacagatt acctctcatg gctcaacgca
    19381 tctttacgct gatcctgcta ctttgcagca cttccgtttt tgccggatta ttcgacgcgc
    19441 cgggacgttc acaatttgtc cccgcggatc aagcctttac ttttgatttt cagcaaaacc
    19501 aacatgacct taatctgacc tggcagatca aagacggtta ctacctctac cgtaaacaga
    19561 tccgcattac gccggaacac gcgaaaattg ccgacgtgca gctgccgcaa ggcgtctggc
    19621 atgaagatga gttttacggc aaaagcgaga tttaccgcga tcggctgacg cttcccgtaa
    19681 ccatcaacca ggcgagtgcg ggagcgacgt taactgtcac ctaccagggc tgtgctgatg
    19741 ccggtttctg ttatccgcca gaaaccaaaa ccgttccgtt aagcgaagtg gtcgccaaca
    19801 acgcagcgtc acagcctgtg tctgtttcgc agcaagagca gcacaccgcg caattgccct
    19861 tttccgcgct ctgggcgttg ttgatcggta ttggtatcgc ctttacgcca tgcgtgctgc
    19921 caatgtaccc actgatttct ggcatcgtgc tgggtggtaa acagcggctc tccactgcca
    19981 gagcattgtt gctgaccttt atttatgtgc aggggatggc actgacttac acggcgctgg
    20041 gtctggtagt tgccgccgca gggttacagt tccaggcggc gctacagcac ccatacgtgc
    20101 tcattggcct cgccatcgtc tttaccttgc tggcgatgtc aatgtttggc ttgtttactc
    20161 tacaactccc ctcttcgctg caaacacgtc tcacgttgat gagcaatcgc caacagggcg
    20221 gctcacctgg cggtgtgttt gttatggggg cgattgccgg acttatctgt tcaccatgca
    20281 ccaccgcacc gcttagcgcg attctgctgt atatcgccca aagcgggaac atgtggctgg
    20341 gcggcggcac gctttatctc tatgcgttgg gcatgggcct gccgctgatg ctaattaccg
    20401 tctttggtaa ccgcttgctg ccgaaaagcg gcccgtggat ggaacaagtc aaaaccgcgt
    20461 ttggttttgt gatcctcgca ctgccggtct tcctgctgga gcgagtgatt ggtgatgtat
    20521 ggggattacg cttgtggtcg gcgctgggtg tcgcattctt tggctgggcc tttatcacca
    20581 gcctacaggc taaacgcggt tggatgcgcg tggtgcaaat aatcctgctg gcagcggcat
    20641 tggttagcgt gcgcccactt caggattggg catttggtgc gacgcatacc gcgcaaactc
    20701 agacgcatct caactttaca caaatcaaaa cggtagatga gttaaatcat gcgctcgttg
    20761 aagccaaagg caaaccggtg atgttagatc tttatgccga ctggtgcgtc gcctgtaaag
    20821 agtttgagaa atacaccttc agcgacccgc aggtgcaaaa agcgttagca gacacggtct
    20881 tacttcaggc caacatcacg gccaacgacg cacaagatgt ggcgctgtta aagcatctta
    20941 atgtccttgg cctaccgaca attctctttt ttgacggaca aggccaggag catccacaag
    21001 cacgcgtcac gggctttatg gatgctgaaa ccttcagcgc acatttgcgc gatcgccaac
    21061 cgtgaacgac acttgcagcg ggaaagacgg aggaaaatag cgtgcaacgt gaagatgtac
    21121 tgggagaagc cctgaaatta ttagaattac aagggattgc caacaccacg ctggagatgg
    21181 ttgctgaacg tgtggattat ccactggacg agctacgccg cttctggcca gacaaagagg
    21241 caatcctcta cgatgcgctg cgttatctta gccaacagat agatgtctgg cgtcgtcagc
    21301 tgatgctgga cgaaacgcaa accgccgaac aaaagcagct ggcacgttat caggcgttat
    21361 cggagtgcgt taaaaacaac cgctatccgg gctgtctatt tatcgctgcc tgtacgtttt
    21421 atcccgatcc tggccaccct attcatcaac tggccgatca gcaaaaaagc gcggcctacg
    21481 atttcaccca cgaactgtta accacactgg aagttgacga tccggcgatg gtagcaaagc
    21541 agatggaact ggtgctggaa ggctgtttaa gccgaatgct ggtgaatcgt agccaggcgg
    21601 atgtcgacac tgcacatcgg ctggcggaag atatcctgcg cttcgcccgc tgccgccagg
    21661 gtggtgcatt gacctgacag aaacacagaa aagaagcgat ttgccgcaat cttaagcagt
    21721 tgaatcgctt ttactgaaat taggttgacg agatgtgcag attacggttt aatgcgcccc
    21781 gttgcccgga tagctcagtc ggtagagcag gggattgaaa atccccgtgt ccttggttcg
    21841 attccgagtc cgggcaccaa attcatatca acggacctct acggaggttc gtttttcgtt
    21901 tcagaacgcc acgatttaag cgttctgcct acaaatcaat tctaccgaac tcaaccagat
    21961 tccccccaca tcaaccccat tgtgtgggta taattgcggg cataccccag ttcgacagaa
    22021 tttgtaccct ctttaacgca ttcagaaggc tgaactatgg cactgactga cgcaaaaatc
    22081 cgggctgcaa agcccactga caaggcttat aaactcactg acgggactgg catgttcctg
    22141 ctggtacatc ctaatggctc ccgttactgg cgtctccgtt atcgtattct gggtaaggag
    22201 aagactctgg cacttggtgt gtatccagaa gtttctctct ccgaagctcg tacaaaacgg
    22261 gatgaggccc gaaaactgat ttcggagggg gttgaccctt gcgaacagaa aagagctaaa
    22321 aaagtagtcc ctgatttaca gctctctttt gaacatattg cgcgacgctg gcatgccagt
    22381 aataaacaat gggcacaatc acacagcgat aaagtactca aaagcctcga gactcacgtt
    22441 ttccccttta tcggcaaccg ggatatcaca acactcaata ccccggatct gcttatccct
    22501 gttcgtgctg cagaagctaa acaaatttat gaaatcgcca gtcgtctgca gcaaagaata
    22561 tctgccgtaa tgcgttatgc cgtacagtct ggcatcatca gatataatcc tgctctggat
    22621 atggctggcg cattgactac ggtaaaacgc cagcatcgcc ccgctcttga tctttctcgc
    22681 ctgcctgaac ttttgtcgcg tattggcagt tacaaagggc aaactgtcac ccagcttgcc
    22741 gttatgctga atttactggt ttttattcgt tccagtgaac tcagatacgc ccgctggtct
    22801 gaaattgata ttgacaatgc catgtggact attccagccg aacgcgaacc cctgccaggc
    22861 gtaaaattct cacaccgggg ctccaagatg cgaacaccac atcttgtgcc actcagcaaa
    22921 caggctgtag ccatactgac agaactacag acatgggctg gtgaaaatgg tctgatcttt
    22981 acgggagcac atgacccgcg taaaccaatc agtgaaaatg taatgaacgc atc
//
LOCUS       DAJVUY010000057        22865 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.057, whole genome shotgun sequence.
ACCESSION   DAJVUY010000057 DAJVUY010000000
VERSION     DAJVUY010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22865
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.057"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            39..968
                     /gene="aaeR"
                     /locus_tag="OQQ72_001972"
     CDS             39..968
                     /gene="aaeR"
                     /locus_tag="OQQ72_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HCS2011718.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="OQQ72_001973"
     CDS             complement(1096..2541)
                     /gene="tldD"
                     /locus_tag="OQQ72_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HCS2011719.1"
                     /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2697..6497)
                     /gene="yhdP"
                     /locus_tag="OQQ72_001974"
     CDS             complement(2697..6497)
                     /gene="yhdP"
                     /locus_tag="OQQ72_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein YhdP"
                     /protein_id="HCS2011720.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFHLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKLLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWQPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6565..8034)
                     /gene="rng"
                     /locus_tag="OQQ72_001975"
     CDS             complement(6565..8034)
                     /gene="rng"
                     /locus_tag="OQQ72_001975"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HCS2011721.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="OQQ72_001976"
     CDS             complement(8024..8617)
                     /gene="yhdE"
                     /locus_tag="OQQ72_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HCS2011722.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAHKKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="OQQ72_001977"
     CDS             complement(8626..9114)
                     /gene="mreD"
                     /locus_tag="OQQ72_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCS2011723.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="OQQ72_001978"
     CDS             complement(9114..10199)
                     /gene="mreC"
                     /locus_tag="OQQ72_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCS2011724.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPTTGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10265..11308)
                     /gene="mreB"
                     /locus_tag="OQQ72_001979"
     CDS             complement(10265..11308)
                     /gene="mreB"
                     /locus_tag="OQQ72_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HCS2011725.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="OQQ72_001980"
     CDS             complement(11613..13553)
                     /gene="csrD"
                     /locus_tag="OQQ72_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HCS2011726.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKYPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13705..14679
                     /locus_tag="OQQ72_001981"
     CDS             13705..14679
                     /locus_tag="OQQ72_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS2011727.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVMVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15657..16127
                     /gene="accB"
                     /locus_tag="OQQ72_001982"
                     /gene_synonym="fabE"
     CDS             15657..16127
                     /gene="accB"
                     /locus_tag="OQQ72_001982"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HCS2011728.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16138..17487
                     /gene="accC"
                     /locus_tag="OQQ72_001983"
     CDS             16138..17487
                     /gene="accC"
                     /locus_tag="OQQ72_001983"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCS2011729.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17579..18626)
                     /locus_tag="OQQ72_001984"
                     /pseudo
     CDS             complement(17579..18626)
                     /locus_tag="OQQ72_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18623..19586)
                     /locus_tag="OQQ72_001985"
                     /pseudo
     CDS             complement(18623..19586)
                     /locus_tag="OQQ72_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
     gene            complement(19608..20597)
                     /locus_tag="OQQ72_001986"
                     /pseudo
     CDS             complement(19608..20597)
                     /locus_tag="OQQ72_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20598..22097)
                     /locus_tag="OQQ72_001987"
     CDS             complement(20598..22097)
                     /locus_tag="OQQ72_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS2011730.1"
                     /translation="MTDVILDVSHIAKTFGHVQALKDITLSLRKGRVHTLLGENGAGK
                     STLMKILAGVYPPTQGTITLRGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIY
                     ANNEPRRFGIINDKKMLADCQNLLAERGIPLDPLEMVGNMSMAHRQLVEIAKALSYAA
                     DVVIMDEPTSSLSDNEAEILFNIIEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGE
                     YIATHEKKNSDIQHLIAQMVGREMKNIWPARLGEIPDENVPAKLEVKNLSHPSLFKEI
                     SFAVRPGEVLGFFGLVGAGRSDVMKALFGLVSYQGTVLIDGKEVRITNPKQAIDHGIA
                     FVTENRKEEGLVLMHDVNMNTHHVAFQYNASRMGLINHRQEEAKTLQSIARMNTKVSS
                     VHQAVGALSGGNQQKIVLSKWLEKTPRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGT
                     AIILVSSELPEVMALSDRLVVMRNKTIADIYSCENLTQTQVMTAATGVR"
     gene            complement(22158..>22865)
                     /locus_tag="OQQ72_001988"
     CDS             complement(22158..>22865)
                     /locus_tag="OQQ72_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS2011731.1"
                     /translation="LFANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADK
                     AGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLNGKGTVASISYPALQSVV
                     ARVDGFKKGLSDTPDIKIVAEQPSITRAEALTTAQNIMQANANLNGLFGFGDDAALAA
                     VIAAKSAHNDNIKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNG
                     KPVEKMIPVQPGVYTGK"
BASE COUNT         5668 a         6193 c         5459 g         5545 t
ORIGIN      
        1 attatgtgat ctaaatcact tttaagtcag agtgaataat ggaacgacta aaacgcatgt
       61 cggtgtttgc caaagtagtt gaatttggct cttttaccgc cgccgccaga cagctacaga
      121 tgagcgtttc gtccatcagt cagacggtgt caaaactgga agatgagttg caggtaaagc
      181 tgttaaaccg tagcacacgc agcattggcc tgaccgaagc cggtagaatt tactaccagg
      241 gctgccgtcg tatgcttcat gaagtgcagg atgttcatga gcaactgtat gccttcaata
      301 acacccccat cgggacgcta cgcattggct gttcttcaac tatggcacaa aatgttctcg
      361 ccgggctgac agccaaaatg ctgaaagaat acccaggttt gagcgtcaat ctggttaccg
      421 gaattccagc ccccgacctg attgccgacg gtctggatgt ggtgatccgc gtcggcgcgt
      481 tgcaggattc cagcctgttt tcccgccgtc ttggcgcgat gccaatggtg gtgtgcgccg
      541 cgaaaagcta tctcacacaa tacggcatac cggaaaaacc cgccgattta agtagccatt
      601 catggcttga atacagcgtg cggcccgaca atgaatttga actgattgca ccggaaggga
      661 tctcgactcg cctgatcccg caagggagat ttgtgactaa tgatccgatg acgctggtgc
      721 gctggctaac ggcgggtgcc gggatcgcct acgtgccgct gatgtgggtg atcaacgaga
      781 tcaatcgtgg ggagctggag atcctgctgc cgcgttatca gtcagatcca cgcccggttt
      841 atgcgttata taccgaaaaa gataagctgc cgctgaaggt acaggtcgtg atcaactcgc
      901 tgacggatta ttttgttgag gtcggtaaat tgtttcagga gatgcacggg cgcgggaaag
      961 agaagtaatt catattgtac tgttacgttc tacaaacctg tgccaacggg ttcccctcac
     1021 cctaacccca gaggagcgag gggaccgttc gtgcacgtag aaagattaat tatccttctg
     1081 aaaataatga aattattacg cagtaccgcc aacagtcagg ttatcaactt tcagcgttgg
     1141 ctggcccacg ccaaccggca aactttgccc ttctttaccg cagacaccca cgccgttatc
     1201 cagtttcagg tcgttgccaa ccatcgaaat ctgctgcatg gtttcgatac cggaaccaat
     1261 caacgttgcg cctctcaccg gcttcgttac tttaccgttt tcaatcagat atgcttctga
     1321 agtggagaaa acgaatttgc cggaggtgat atccacctga ccgccaccaa agttcggtgc
     1381 atagataccg tactcaacgg attcaataat ttcctgcggg gtcgatttac ccggcagcat
     1441 ataggtgttg gtcatacgcg gcatgggcag atgggcgtag gattcacggc gaccgttgcc
     1501 agtcggcgtc atccccatca aacgcgcgtt gagtttatcc tgcatgtagc ctttcagaat
     1561 gccgttctca atcagcacgt tgtactggcc tggcgtacct tcgtcatcaa tcgccaccga
     1621 accacggcga tcgaccatcg tgccgtcatc aaccacggta cacagttctg aagccaccag
     1681 ctccccgacc tgcccactaa atactgaagt gccgcggcgg ttgaagtcgc cttccagacc
     1741 gtgacctacc gcttcatgca acagcacgcc cggccaacct gcgccaagta ctaccggcat
     1801 ggtgcccgct ggtgcagcaa cggcagaaag attgaccagc gccatacgca ctgcttcttt
     1861 tgcccatgca tccgcacgga cttcgccgtc aagatcggca aggaagaact cataaccaaa
     1921 acgaccgcca ccgccactgg caccgcgttc gcgtttgcca tcttcttcga ccagaacgct
     1981 cacggaaaga cgcaccagcg gacggacatc cgccgctagc gtgccgtcgg tggccgcaac
     2041 cagaattaat tcatagacac cactgaggct ggcagtcact tcctgtacgc gcttgtccgc
     2101 ttcgcgagca accttatcga cgcgacgcag gatatccagc ttctcttcac ggctcatgct
     2161 ttgcagcgga tctaccgagg tatacaacgg gctatgccct accgcgccca gcgtctgtac
     2221 tttgccatca ccactatcac ggacgatggt gcgcgccgct tgcgcactct gttccagcgc
     2281 cagcaggctg atttggtcag cgtaagcaaa tccggttttt tcaccgctga ttgcacgcac
     2341 gccaacgccc tgatcgatgt tgtaagaacc atctttaata atgcggtctt ctaaaaccca
     2401 ggattcgtga tagctcgact gaaaatagag atcgccataa tcaaggcgac gttcggccag
     2461 ttgaccgagg atcgcgaaca agtcctgatg tttcaggccg ttcgccgcta gcaattgttc
     2521 acttactagg ttaagactca tcgtttttgc tactcgttag ttactgcagt agaggatttt
     2581 ttacggctgc cggatgcggc gtgaacgccc tatccgacct acggttatgt tctggctcgt
     2641 tggcctttgg caacgattat catatgagat tggggcaatt acgcgccctc gtcaaatcat
     2701 tgcgcttttt ctttacgcgg ttggcgcaac acttcgttga tttgcggatc gtccagcgga
     2761 cccgaaatgt gatagcgcaa aatggagact ttgctccaca gcggccccag cactttactg
     2821 gctgcaaata ctgccgcgcc aacaatgggg ttaaccgcaa aagccgcagc cacgcccacc
     2881 gtcgcagaaa tctctggtgc gacaaccgct tccatattca ggtcgcgacg taccagattt
     2941 accgaccctt tcatggcgat atccgcctcc aggccatcca ccagcgtgtc gtcggtgtgc
     3001 ataacgccgt ctttaatcca cgcggtgctg cgaatggagt caaaatagaa cccttcgcca
     3061 aaagtgtctc tgaaatcaaa acgcagctta cgcatcaggg catcaacgct caataagcgc
     3121 agcaattgcc cggcatgtcc ggtattgatt tcggtaattt cgcctttacc cagttgagta
     3181 tgaatgatgc cattcaacgt cgcctcatct ggttgccagg gtgctttgcg ccagtgtaaa
     3241 tcgtaatcca cattaaatga cgactggcgt atgggcgtcg tgacaccaaa aaattctgcg
     3301 gcggcatcaa ttttctgccc gcgcagtttt cctttcagcg aggtacgttc attccccgga
     3361 ttattaaccc attcaccatc ggcagtaagc cgcgagaaac cagtatcaat cagtccattg
     3421 gtcagcgtta acgtatcgcc agaaatggtg agatcactgt caatacgacc gaatttttgc
     3481 ccccagaacc agcactctgt gcatcgtatt tgtgcgtccg gccagccacg gaagttaatg
     3541 cgctccgttg tcgggaaagg tgatgacggt gttgaatcac cacgagtttt cgccacgctc
     3601 gggttgtaat aaagatattt gatattcgcc agccacggcg cgttattacg catcgccagc
     3661 gtggcattga tttcacgccc ctgtgcctca accagggtgc catttgccgt cggttgcgaa
     3721 acaatactca ggttattcca ttgctgattt cccagtgaca acataggcgt acgtaacgtt
     3781 atgtgttgtg ggaaactcgc tgcaccaccg acactctccg cagcgccttt ctggaacagg
     3841 gccagccact cggcaccatt catcggcggc atattgagtt caacgccact ttgttccggc
     3901 aacggcggga gcgttttact gtctgccgcc caaatagcac gatcgagcgt cagcttttga
     3961 ccaagcaacc agcggctatt gaaatggtta tccgcaccag cctgtccggt taattcaaag
     4021 ctgctgagat tgccatcaac cttaacgttt accggcagtg gttcacccgc aggtttggct
     4081 aacggtgaag gtaagtgact gctcacatta ttcagatcgc cgttcagctc tacgttatag
     4141 gtcgcgccag catgataagg cagatcaatg cccactttac catcccacgc cacgctgcca
     4201 ctcaatgctt cgttcaccgc tgcaggcaga acgccggttt tcgccggttg ccagttaccg
     4261 ttgaggttta ccgcaacctg gtaggctttt gccccttctt tggtggaaaa atccacgttc
     4321 aacggctgat taaaccagct tgctgtcagt ggttcacttt gcagatcgcc attgataaag
     4381 ctgaatttac cgctcaaatt tttcagggtg ctgtcgagta gtttgataaa cagactgtta
     4441 ttacgcagcg tcacttcacc tttcgcggtt accagttcgc cgttcagcgg gatatcaaga
     4501 tgtaagcgag cattcacatc gccgtcgagc tggagttctt gcagggtcgc acccagagaa
     4561 tctttcagcg gtgtctcatc aaagtaaggg ccaacggctt tacccggacc tttaatgtca
     4621 gcgtcaatca gcagtttttc tttcgagtag tcagggatca ctgcggtgag attactcgcg
     4681 cgcacgccgc ccagattaac gtcatcggtt ttcatccata aaccgtcgtt aataaagtcc
     4741 agttcaatat caaggttagt taatgcaggc cagtccggct ggaaggcaaa cttcgcgtta
     4801 cgcagcggca ccagcacttc aaactgacct tcgttgtgtt tataggggaa gagttgcgga
     4861 ttgccaccat aaaccagcgt cgcgttatcc gcttcaccgc cctgaatcgc gccacttaag
     4921 taatcaacta ggtctttacc catcaagttt tccgggaaat agcgccaggc ttgtgaacca
     4981 tcatcggtac tgatgccagc cagaataccc agccagggtt catcgttagc aggttgcagg
     5041 taacgaaaac cgccgcgcgc atggacagct ttggctttaa cgtcaatatt acgcccatcc
     5101 aggtggaaac ctttgtcatt gttcagccag cttatagttg cctggccgtc ggcgatttcc
     5161 agtggcgcac ggaataccgt ttcgtaaggc atctttgcct gcttcatcga cgcggtaagc
     5221 aaaccatttt caacgctgcc ggaaagcgtc ccggagaagt gttccgcacc cggtaataat
     5281 ttccattgct tccaggccag atcgctccac gatgcctgaa aacgggtctt gtctgccgcc
     5341 tgaagcggga tatccagcgc cagagtgtta atcttgccgc tcggttgtgt ggagcgccaa
     5401 acatcaccca gtgcaggtga aagtttcgcg gccagcgggc gtatgccctc caggcctgcc
     5461 agctccagat tactggcgcg aatccggagt tcgtcactgc gtttattgtc tttgccgcca
     5521 acgtcctgtt ccggtatcca ggccagcgtc aatgctccgc tcggccaggg tttgccgtcc
     5581 atcgtgatcc gtgtatcggg aatagagaac tgccagcccg gattttcacg cgtaatatgc
     5641 gcggtcagat tatccaccga cagcgtatgc gtttgcttct cgcccaacca gctggcaccg
     5701 ccctgtttca gccagacgtc accgccggtt acatcgcctt tgtcgatcgt catccagcct
     5761 tcaagggaga actgtgccgt ttccagagca atattgtcct gcatccattt accgagccac
     5821 ggcttcaggt cgatgtcatc cgcctgtagc cagacgcgac cattgcttaa caacccctca
     5881 tcatcgcgca aatccatgcg cacctgcatc acgccgtgct gtccggtaag gctggagagg
     5941 cttaccaggc cttccgcacg gtgtcgacgt ggatcgttca gccaggtgag ttgtgggatc
     6001 gccagctcgg cgcgctgacc ggatggcgtc agaaaactga cttcactgtc gcggagatcg
     6061 aaatggtcaa attgacgaag aaacagatcg ctgatgtgac tggcttccag gctatcatta
     6121 ccaccaccgc tggtgatagg agtgttggtg cgaaagcgca gctgccagaa agtgaggtcg
     6181 cgaaactgcc agcgcatatg taacaagctc tgccagacat ccagcgccag agtaacgcgt
     6241 ttaaccgaaa attcgccgcc atcttttagt tctgcacgga tgtcgtgtgc ttcaagcgtc
     6301 gggccaaaat tctgccagct ggctgagagc tgactggctt ctaccggcat gccagtcgcg
     6361 gattctattt tgttgaggat ttccggacgc caggcgtcaa gatgcggtaa agcaatacgc
     6421 aggccgctaa ccagcagggc tgcgatcaca acgagcgcgg ctccagtaag cagtaaaatc
     6481 cccggcaatc gcctcacccg tcactccttg tctgctaaaa atgtgactca aaaacccttt
     6541 gccggatggc ggcccagcat ctgtttacat cattacgacg tcaaactgct cctggttata
     6601 gagcggttca atttgtactt taacctgttt gccaacgaaa atttccactt ccgccagcga
     6661 gtgtgactct tcgcctttca aggcttcagc tactgccgga gaagcataga ccaggaaacg
     6721 gtcggagtcg taagcatggt ggacacgaac aatctcgcgc atgatttcat agcataccgt
     6781 ttccacggtt ttcaccgttc cgcgaccgtg gcaggttggg cattcgttac acagtacgtg
     6841 ctcaatgctt tcgcgggtgc gtttacgcgt catctccacc agccccagcg ccgaaaaacc
     6901 attaacgctg gttttcaccc ggtctttgct caacgcctgc tccagcgagt gcagcacgcg
     6961 gcggcggtga tcttcattat tcatatcgat gaaatcaata atgataatcc cacccagatt
     7021 acgcaaccgt aactggcgag cgatagcctg cgtcgcttca atattggtat tgaaaatggt
     7081 gtcgtccaga ttgcgatgac cgacaaacgc tccggtattg atgtccacgg tggtcatcgc
     7141 ttcggtctgg tcgataatca gataaccacc ggatttcagt tctactttgc gttccagcgc
     7201 tcgctggatt tcgttttcga catcaaagag atcgaaaatc ggctggcgtc cggtgtaatg
     7261 ctccagcttg ctggtcatct cgggaatgta ctccgaggta aactccagca atgcttcgta
     7321 agtcaggcgt gagtcaacgc gaatgcggtc cagttcggcg tcggcgaaat cacgcagaac
     7381 acgctgcgcc agcgccagtt cgccgtacag ctgataacgg gtctgcgggc gttttttacg
     7441 ctccataact ttggtccaga cgcgtttcag ataagcggca tcggaggcca gttcagcctc
     7501 gccaacccct tccgctgcgg tacggatgat aaacccgccc tgctcgtcgc aatactctgc
     7561 gaccactttt ttcaggcgtt cacgttctga ttcgctttca atacgttggg aaaccccaac
     7621 gtgagaagcc cctggcataa acaccagata gcgagaaggc agcgtgatat cggtggtcag
     7681 gcgcgcacct ttagtgccaa gcggatcttt caccacctgc accatcagat cttgcccctg
     7741 acgaaccagt tccgagatgt cgcgcaccgt gaattgcttt tgttcttcac ccgccacaca
     7801 ttcggtgtgc ggcatgatat cggatgcatg aagaaacgcg gctttatcca gcccaatatc
     7861 tacaaaagcc gcctgcatac ccggaagtac acgacttaca cgacccttgt agatattgcc
     7921 tactattccg cgtcgcgcct cacgttcaat atgaatttcc tgcagaatac cgccatcaat
     7981 atacgccact cgcgtttccg aaggcgttac gtttactaac aattcagccg tcatgtttat
     8041 cccttttctc acgcagtgcg ttaaaattac ttaataattc atacgtttca accagcggta
     8101 agccgactac ggcgtgatag ctgccattta tcttcctgac aaaacagcca cccagcccct
     8161 gaataccgta tgcacctgct ttatctaacg gttcaccgct ggcgacatag cccgcgatgt
     8221 cttcgtctgt taacgttctg aaagtcacat cggtgaccac caggcaatcg agaatgtgct
     8281 ggctgtcggc caacaccact gccgtcatca cctgatgggt ctgacccgat aatttgcgca
     8341 acatctgcgc cgcatgctct gcgtcgcgcg gtttctccag cacttctcca ttcaggataa
     8401 cgatagtatc cgcacccagc accgggagat cctgcgccgt ttgcgcgaca cccgcctgtg
     8461 ctttcttgtg tgccagacgc acaacatact gctgcgcgct ctcctgcggc tgacgctgct
     8521 cctcaatgcc cgtaacaata cgttcaaagg tcacgccaag ttgcgcaagt aactcctgac
     8581 gacgcggaga accggaagct aaatacagag aagtcataga aacctttatt gcactgcaaa
     8641 ctgctgacgg actttacgca tcagcaagaa aatccacggc cagagcaccc cattgactac
     8701 actactccag aacacttccg gtctgaaaga gacgttaatc actaaaaact ctgcccagaa
     8761 aacaataata tccaccacca gcgaaagcaa catgacgact agcgcctgct gccataatgc
     8821 gaggttgcgg aaaagctggt atttcagcgc caccaggtaa gcaatgatgc tcatcgccaa
     8881 tacgcgtacg ccaagcgtcg agccgctgat cagatccagt atggcaccca tcacaaaacc
     8941 tgtgcccaca tttacgcgat ggggcaaggc caggatccaa tacaacaaga taagtaacac
     9001 ccagtttggc cggaaaacaa tcaggttatc cggccagggc atgatttgca gcaacagcgc
     9061 aatgaggaaa gagagccaga ttacccaacg tccctggcta cgatagctcg ccactattgc
     9121 cctcccggcg cacgcgcagg cggttgagca ccactttgcg gcggcgtagc cctttgtgga
     9181 gagcgattag cagcaggcgc agtagctgca tttcctgtcg tcggttgctg cggagtcggc
     9241 tgagcgatcc ccgttgtcgg ttcaggtaac tttggcccca tcgcgtctgg cgaaggcaat
     9301 acctgcggca tcatctgcat cagacgttca ttagcaacac gatgcacctc ttccggcgtc
     9361 atcgggttag cgccgttacg atccgcgccc cacagcagca gcagataacg caaacgttgc
     9421 agtcctgcag tcggacgcgc ctgaatcaca gtataagcgc gctgggtatc gagttttacg
     9481 gaagagacaa ccgcgaccgg atagccttcc gggaaacgac cgcccagacc ggaggtcacc
     9541 agcacatcac caacacgaat atccgtattc gctggcagat gctcaagctg caaatcatct
     9601 gtacaaccgt taccggctgc aattacgcgg atatcgttgc gcagcacctg gattggcagc
     9661 gcgtgggtcg catcacaaat cagcagcacg cgactggtca gtttagcgac ggccaccacc
     9721 tgaccaacaa cacctttgtc gctgatgacc ggctggcctt cataaacgcc attaacgcta
     9781 cctttatcga taacaacttg atcgctataa ggatcgttaa ccgtggagat aacctgagtc
     9841 accattttct gctcatcctg acgcagcggg gaacccagca gctcgcgcag acgcgcgttc
     9901 tcctgtttgt attgtccaag catcagcagt tcactgtttt tcagcaacag ttcctgacgt
     9961 aacgcccggt tttcaagttc tagttggtca cgcgaggcca gcgtctgcga tacgccatcc
    10021 agcaattcac gaggagcatt ggaaacaaag tagaaaggac tgacggcggt atccatataa
    10081 gtacggattt gactgaacgt ccccaggcgg ctgtcggcaa taataatgcc gagcgccacc
    10141 agcaccgcca gaataaggcg aatctgtagc gacgggccac ggctaaaaat tggcttcata
    10201 agttatgcgt attctcgtat cagaccaggc agggtaaaca gacatttccc ctgcctgcat
    10261 ccgattactc ttcgctgaac aggtcgccgc cgtgcatgtc gatcatttcc agcgctttgc
    10321 cgccaccgcg cgccacacag gtcagcgggt cttcagcaac aacgactgga atgccggttt
    10381 cttccattaa caaacggtca aggttacgca gcagtgcgcc accaccggtg agcaccatgc
    10441 cgcgctcgga gatgtcggaa gccagttccg gcgggcactg ttccagtgca accattaccg
    10501 cgctcacaat accggtcagc ggttcctgca gtgcttcgag gatttcgttg gagttcaggg
    10561 taaaaccgcg tggaacacct tctgccaggt tacggccacg aacttcgatt tcacggactt
    10621 catcgcccgg gtaagccgaa ccgatttcgt gcttgatacg ttctgcggtg gcttcaccga
    10681 tcagagaacc gtaattacga cgcacatagt tgatgatagc ttcgtcgaaa cgatcaccac
    10741 caatgcgcac ggaagaggag taaaccacgc cgttcaagga gataacagca acttcagtgg
    10801 taccaccacc gatatcaacc accatagaac cggtcgcttc agaaaccggc aggccagcac
    10861 caattgcggc agccatcggt tcttcaatca ggaagacttc acgggcacca gcgccctgcg
    10921 cggattcacg aattgcgcgg cgttcaacct gggtcgcgcc aaccggtaca caaaccagaa
    10981 cgcgcgggct tggacgcata aagttgttgc tgtgcacttg tttgatgaag tgctggagca
    11041 ttttttcagt cacgaagaag tcggcgataa cgccgtcttt cattgggcga atggcagcaa
    11101 tattgcccgg cgtacggccc agcatctgct tcgcgtcatg acctactgca gctacgcttt
    11161 tcggtgaacc ggcacgatcc tgacgaatgg ccaccacgga aggctcattc aatacgatgc
    11221 cttgtccttt tacataaatg agggtattcg cagtacccag gtcaatggac aagtcattgg
    11281 aaaacatgcc acgaaatttt ttcaacatac taagggataa tcctgaaagc tggggcggaa
    11341 aagaaaatcc gcttacttta ccaaccacac gcagcagcga caaggcgcaa aaatcatctg
    11401 ctacggtgaa aattagtgca gttcgtttcc tttgttacaa atctctgcct gagtccagaa
    11461 aggcttaatg catcagcagc attcctcgcc tgtttgcaac cgcgtaaggt cattcatctg
    11521 catatgtgct gcaacaatct ggcgagcaga caagcacact cccatgagac gcagcgcgcg
    11581 ttattctacg tgaaaacgga ttaaacggca ggttaaaccg agtatctttg tgaatatttt
    11641 ttcacgttag tatcaagtgg ctgtgaggac gcgaaaaaat ccccttgccc gcctgtaaca
    11701 ccgcgctgaa tcagggtctg ccactcgctt cgcgaacgca caccggtggc gtaaacctgg
    11761 gtgctggtcc cggagcaggc ttccaccagg ctttgaacca gcagctggtt ctccgttcgc
    11821 ttctcaatgt ttctgaccag ccccggatgg agcttgagta actcaacatt aagttctttg
    11881 atccaactgg tgcttaccag cgtcaaacca gcctggttga cggctacccg tacccctaaa
    11941 gcattcacta aacgaataac aggttgtaaa cgactgatat gttgacctac atcggcctct
    12001 gcaagttcaa taattatgcg ttttcgttgt gatttttcac attgcattaa cgtatcgcgc
    12061 agccaacgct gaaaacgcgg gcgaatcagc gactcaacgg taacctgaat cgccagattt
    12121 tcctctggcc agtaacgcaa tagtggaata agacggctga tttgcagacg gtcatactct
    12181 tccgataagc caaactgcaa gaccatcggc atatactccg ccgagctaac ctcttcatta
    12241 ccatcgaaga tgcggcacat gagttcgcga tgatgaacct gaccttcgcg agtaaccgcc
    12301 ggtttttgat aaaggcgcgg gccgccgcga ctgagcattt gctcgataag cgtacgccag
    12361 cgaacattac cgcgtccttt ttcaggcaac gagtcatcgt aaatagccca gctattgccg
    12421 ccctgcaatc ccgcattacg cgtggcagac tctgcatgtt ccattacctg ctcggtatcc
    12481 tgaccactac gccaggcgca gataccaatg tggatcatat cgtcgcgatc gagcatttta
    12541 ttgttcggca aggtatcgac ggctttgatt aactgaccgg cgatgctctc tgcctctttt
    12601 aacgtccggt gcggtaacag cgcagcaaaa tcactgcggt ggtaacgcgc cagcagtgcg
    12661 ccagggtagc gcatcataaa tgtcgacagc agattcgtca gagtgaagaa ctgttcttca
    12721 acctggctgt gcccccaagt atcgctcaac atattgaaat ccggcagacg aatcatcatc
    12781 acgatcccgt gggtacctac tttctcctga tcttccagta acgttgctaa ctgattatcg
    12841 aaaaagagtc ggttattgag gccggttttc acgtcctggg cggcataaga gcggatcagc
    12901 gtatcaagac ggctgtgttg ttcgcgtgcg ttctgaattt cacgaagcag cgtatccagc
    12961 gcactgctgg ttctgggcgg ccattcatag atggttccca acacattaga gccacgctca
    13021 ccgtttaaga tacgagtagc ccgggtttcc agcaattctt gcccggcaag ttgccgttgt
    13081 aaccagcgta ccgccaagaa gagcataaca atgataaagc taatcgcccc cgtgagcggc
    13141 gcggtggtca tcaacgaatg gaaatagttg cccatcggat cctgataaac cagacgcagc
    13201 gacatccccg gatactttat taacggaacg ctcagttcac gaaacagatc gctggagcca
    13261 accggacgat aactaccatt tctggccagg gtataaacct gtttatcacc atggagcagg
    13321 tctacacgaa cgatatctgc cgacatcatt aattcggtaa tttgtggcct taatgtgctg
    13381 aagtcattcg acacaaggtg ggtatcaatc gccgtcgcca ccgcctgaac gcgatgacta
    13441 aacttatact gaattgcgtt gtagaaactt agcgaacagc ccagcaaagt cacaaaaatt
    13501 gttaacccgg tgagcagcgt aacaaaggcc gaaaatttcg tcgttaatct catccttgtg
    13561 ttaactccga tagtgaggaa gcgggcatac tagcaaatca gatttatctc gcaatttatt
    13621 gcgcttcatc ggctttgctt ttccattagc gagtataatc ttcagaaatt attttccaat
    13681 ccatcatgca catgaggacc acttatgcag gcgttacttt tagaacagca ggacggcaaa
    13741 actctcgcat cagtacagac tctggacgaa agtcgcctgc cggagggcga tgtcatggtc
    13801 gatgttcact ggtcgagcct gaactataaa gatgcgctgg cgattaccgg taagggaaaa
    13861 atcatccgta attttccgat gattcctggg atcgattttg ccggaactgt acgcaccagc
    13921 gaagatccgc gttttcatgc cggtcaggag gtgttactca ctggctgggg cgttggtgaa
    13981 aaccactggg gtgggctggc ggagcaggcg cgagtgaaag gtgactggct ggttgccatg
    14041 ccgcaagggc tggacgcgcg taaagcaata attatcggta ctgccggttt taccgccatg
    14101 ctgtgtgtga tggcgctgga agatgccggt gttcgcccgc aggacgggga gattgtcgtg
    14161 acgggtgcca gtggtggcgt cggcagtacc gccgtggcgc tgctgcataa gttgggttat
    14221 caggtcgttg ccgtttccgg tcgcgaaagt acccatgaat atctgaaaag tttaggtgcc
    14281 agccgtattc tccctcgtga tgagtttgcc gaatcccgtc ctctggaaaa acaagtctgg
    14341 gctggggcaa ttgacactgt tggcgacaaa gtgctggcaa aagtgctggc gcaaatgaat
    14401 tacggcggct gcgtggcggc ctgtggtctg gcgggtggtt ttactctgcc aaccacggtc
    14461 atgccattta ttctgcgtaa tgtccgtttg caaggggtgg attcagtaat gacgccacca
    14521 gaacgccgcg cacaagcctg gcagcgactg gtcgccgatt taccggaatc attctatacc
    14581 caggcggcaa aagagatatc tctgtcagag gcaccgaact ttgccgaggc catcattaat
    14641 aaccagatcc agggtcgcac gctggtgaag gttaactaac catttagcaa ggaataataa
    14701 gagagggaac tcattttgac atcattattc aatcggttaa cgggaaaagc ggttagccgg
    14761 acagctttcg tcgaacacct tggtcaggaa gttgtacaac atcatccaaa ctggaaagtc
    14821 atgatttcga ctgaccacaa attgatgcgc attgatactc ctctaaacag ccattattga
    14881 tacgcctccg tcgcctgtta ggtttatggt gctttgcctg ggcgacacta cgcttaacct
    14941 gttactgatt tctggtacca tggggtgaat aatctgattt tatttgacta caaattaacc
    15001 actcgaacct atttaatgct gagaattgtc agtcggttga ttttgcgtgc tttagcattc
    15061 acatctatcc agacgatgca gtgaaaattg ggtaatcccc agcaaccgct gcgtaatgtc
    15121 gtctatcttg tcgcgatcct ggcatcccta cattatttgt ggtctgtgaa gattatctca
    15181 ttgcagcccc tcatcttcgc agggctggct ttacagcttt tcaccttacg ttataagaag
    15241 ttccgtcgat gatggcgcta atttcgtgaa ttgtgcggct tgttgcaaat tacacggtgt
    15301 tgaaggttat ttacatgtta gctgttgatt atcttccctg ataagaccag tatttagctg
    15361 ccaattgcta cgaaatcgtt ataatgtgcg acctcgtcct ccctgacgca gtttttgcgc
    15421 tgcggaaaag gtgacattgg cgcaacgaag gtatattttg ttttttgccg gaggatagca
    15481 gcagatcgct gcacaatgtc cgtcaagtct aacattgata ctctggggca aaatagaccg
    15541 gcgtcccggc ctgctggaat ttatcgctat gcatacagct gtcggggcat acgctttaca
    15601 gacggcggtg aaacgcctgt cacaatcaca ctaaacaaag agtacggaac ccactcatgg
    15661 atattcgtaa gattaaaaaa ctgatcgagc tggttgaaga atcaggcatc tccgaactgg
    15721 aaatttctga aggcgaagag tcagtacgca ttagccgtgc agctcctgcc gcaagtttcc
    15781 ctgtgatgca acaagcttac gctgcaccaa tgatgcagca gccagctcaa tctaacgcag
    15841 ccgctccggc gaccgttcct tccatggaag cgccagcagc agcggaaatc agtggtcaca
    15901 tcgtacgctc cccgatggtt ggtactttct accgcacccc aagcccggac gcaaaagcgt
    15961 tcatcgaagt gggtcagaaa gtcaacgtgg gcgataccct gtgcatcgtt gaagccatga
    16021 aaatgatgaa ccagatcgaa gcggacaaat ccggtaccgt gaaagcaatt ctggtcgaaa
    16081 gtggacaacc ggtagaattt gacgagccgc tggtcgtcat cgagtaacga ggcgaacatg
    16141 ctggataaaa ttgttattgc caaccgcggc gagattgcat tgcgtattct tcgtgcctgt
    16201 aaagaactgg gcatcaagac tgtcgctgtg cactccagcg cggatcgcga tctaaaacac
    16261 gtattactgg cagatgaaac ggtctgtatt ggccctgctc cgtcagtaaa aagttatctg
    16321 aacatcccgg caatcatcag cgccgctgaa atcaccggcg cagtagcaat ccatccgggt
    16381 tacggcttcc tctccgagaa cgccaacttt gccgagcagg ttgaacgctc cggctttatc
    16441 ttcattggcc cgaaagcaga aaccattcgc ctgatgggcg acaaagtatc cgcaatcgcg
    16501 gcgatgaaaa aagcgggcgt cccttgcgta ccgggttctg acggcccgct gggcgacgat
    16561 atggataaaa accgtgccat tgctaaacgc attggttatc cggtgattat caaagcctcc
    16621 ggcggcggtg gtggtcgcgg tatgcgcgta gtgcgcggcg acgctgaact ggcacaatcc
    16681 atctccatga cccgtgcgga agcgaaagct gctttcagca acgatatggt ttacatggag
    16741 aaatacctgg aaaatcctcg ccacgtcgag attcaggtac tggctgacgg tcagggcaac
    16801 gctatctatc tggcggaacg tgactgctcc atgcagcgcc gccaccagaa agtggtcgaa
    16861 gaagcaccag caccgggcat taccccggaa ctacgtcgct acatcggcga acgttgcgct
    16921 aaagcgtgtg ttgatatcgg ctatcgcggt gcaggtactt tcgagttcct gttcgaaaac
    16981 ggcgagttct atttcatcga aatgaacacc cgtattcagg tagaacaccc ggttacagaa
    17041 atgatcaccg gcgttgacct gatcaaagaa cagctgcgta tcgctgccgg tcaaccgctg
    17101 tcgatcaagc aagaagaagt tcacgttcgc ggccatgcgg tggaatgtcg tatcaacgcc
    17161 gaagatccga acaccttcct gccaagccca ggcaaaatca cccgtttcca cgcacctggc
    17221 ggttttggag tgcgttggga gtctcatatc tacgcgggct acaccgtacc gccgtactat
    17281 gactcaatga tcggtaagct gatttgctac ggtgaaaacc gtgacgtggc gattgctcgc
    17341 atgaagaatg cgctgcagga gctgatcatc gacggtatca aaaccaacgt tgatctgcag
    17401 atccgcatca tgaatgacga gaacttccag catggtggca ctaacatcca ctatctggag
    17461 aaaaaactcg gtcttcagga aaaataattt gtgacgcgcg gtgttttcat cgcgcttagc
    17521 aaagaacgta atcaacgccg ggcctgttaa cgctgcccgg cgtttttatt gccgttagct
    17581 aacggtagcc tgcaatttcc gctttcaacg cgctcatttc agcatcgcca tcaacaattc
    17641 ccagctcaaa gcagtatttc tttgtttccc ctggctcaat aaagggcaga cgcccctgcg
    17701 ctcgttcttt atcacgaccg tcaggaaaac tattactgac ctccagtccc ataacatact
    17761 cacccgcgcc taaatttttc cactggataa agttgggtag ctgcatggtg tcgaatttct
    17821 cgtaaattcc ccaccccagt tcggcgttca ccagagcaac tttactcatc ccctgactgt
    17881 cgctattcaa cgtgagatag taaacctgct cgtcaaaacc gggctgtggg gtacaaatct
    17941 ccagatgact ggttaaccct tccgccgcat gcggagttcg tggcgttacg cttttagccg
    18001 acagcaagat ttctggcctg tggcgataat aaaggccagc cgtaattaaa gtgataaaga
    18061 atttgcagcg gctggcgggt gaaaccatga ttagtcacct tgtcttcaat gcgcagcaca
    18121 ttttcgccat aacggcagcg aatggtcctt tccagcgtca gattttcgcc gaacagtcgc
    18181 gtttcccgta ctttgccatt gatgacaaat tcaatgccgt cgtcggtccg ttctgtgcga
    18241 taccccacct cttctgctgg agtcgcagcc aaacgcccgt gtaaccccag cgtttctcct
    18301 tcatcctcac aaggcgtgcc aatgtagcta agtccgcagg tagtcagtaa ccccgcgtaa
    18361 aagctacgta aaaatccgtt gccctgagac tcaaaaaaag cgggggcgac aatgccgttg
    18421 ggggtgataa aagaaagcgc cgtgtccttg tagctggccc atgcaatatc cagcgcgcga
    18481 tcttttacca ccgtaaatgc cagtcccgca ccagtacgga catcaaacgc ttctgtaccc
    18541 tttgctctgc cactacgtaa ctcatagtgt ttaattccgg caacctgcga gagatcgcca
    18601 atccacgacc aaatttcgtt tttcattgtg ctgcttcccg aatggacatg tcatggcgct
    18661 ggatgaacgc ttcgatttcc gcaaggcgag acgttccctc cattgggcca cgtctggtta
    18721 ccgccagcgc accgcaggca ttggcatatt gcagcgctcg atggacgtca aaccctagct
    18781 ggcggcaggc aatccacgcg ccaccaaagc agtctcccgc accggtcggg tcaacttctt
    18841 ccaccggata gctctcaaca tgaaactgct cattcgcgga gtagtaactg gcaccttgat
    18901 tgccgcgctt cacaatcacc tctttaacac cttcttcaag aaaacctgcg attgcacgct
    18961 ccggcgtcga atgtggcgac aagagcaaca cttcgccctc gctgggcata tagatatccg
    19021 ttaactcaag aacaaagtgg agggcgtcac gcatttctgg aatatcgagc atctctttac
    19081 gaatattagg gtcgaaagaa ataacaccac catttgcttt aacgatagtt accgcttttt
    19141 ttactgcgtc ataccatatg aaacgaaaac agggaagagc ccataatatg aaaatgggta
    19201 cagtccttca gaatattttc atcaacatgc tgcgccgata atttaccgca agcggcattc
    19261 ttaatattaa aaataaaatc gcgatcgcca gagttatgat aagtaacaaa ggcactcccg
    19321 gtagcttcct gaggtaagac tgaaatcccc ctgatatcca caccgtcagc agccagacga
    19381 tgtatattaa tatcaccaaa gccatcattc cccacacagc taatgatgcc gcacggaacg
    19441 ccaagacgtg tcacctggtc gataaaaata gcgggcgcac cactgggata agggccgttc
    19501 cagatacctg gttgatcaaa tggctggccg attttactcg ccataatttc aaccagaatt
    19561 tctccaattg tgaagacctt actcatatga ttaattcctt gaaatgatta gctgcgtttt
    19621 cttttatttc ttacgtcaaa ataaacggct acaagaatga ctaatccttt aaccaccatc
    19681 tggtaaaaat agggaacatt cattaagttc atgccattat taataacgcc gatagttaat
    19741 gcgccgatca ccgtccccac cacggttcca tagccgccgt tcaggctggt gcctcccagt
    19801 acagccgcag caatagcatc cagttcgtag ctcaacgcgg aattcggtta cccggaatag
    19861 aggcgtgagg cgaggatcat cccgctgata cctgccagca cggctgtaat cataaagact
    19921 ttaattttca agcgggtgac atttatccct gaataaattg ccgcttcttt attaccacca
    19981 gtgatataaa tttttcgtcc aaaggttgtt ttagtaagaa tgaagtggtt aatcagcaat
    20041 aagatgatta atatccagat tggaataggt atatagagaa attctccatt ccccagtgcc
    20101 agaaaggcat catctttaat catgatgggc ataccatcgg tcactatata agcgatacca
    20161 cggaagatcc ccatagtagc aacggtgaca ataaacgacg ggatccccgc tatagccgtc
    20221 aagccaccat ttatcatccc cagagccagt gctgcaataa tggataatgg gaccaataaa
    20281 ataaatggaa ttccccatga agccccaagc gcagcaaatg tgccaatcaa tgcaatggtt
    20341 gaaccgaccg ataaatcaat atcgccaagc aaaagtacat aagtcattcc ataggcggta
    20401 attgcaatta tcgaaacctg aagaataata ttagtaatgt tgttggcggt aaaaaaactg
    20461 tcattaataa aactgaacag aatgattaac accaccattc cactgaggat accgccatat
    20521 tgcctgaaga ctttttttaa attatttgca atgggaattt ccgaaggttt cggactggca
    20581 agagttttct ctgtcattta acgtactcct gttgcagcgg tcattacctg tgtctgcgtt
    20641 aaattttcac atgaataaat atcggcaatc gttttattac gcattaccac cagacgatcg
    20701 ctaagtgcca tgacttctgg cagttcagag gacaccagaa taattgctgt ccctgccgca
    20761 gccagttgac gtatcacgtt atagatttca aattttgcgc cgacatccac tccgcgcgtt
    20821 ggctcatcga gcaataaaat acgcggagtt ttctccagcc acttcgataa cacgattttc
    20881 tgttgattac cgccgctcag cgctcccact gcctgatgta cagaactcac tttagtgttc
    20941 attctggcaa ttgattgcag cgtcttcgcc tcttcttgtc ggtgattgat gagtcccatc
    21001 cgcgaagcgt tatattgaaa cgccacatgg tgcgtgttca tattgacgtc gtgcatcagc
    21061 actaaccctt cttccttgcg gttttcggtc acaaaagcaa tgccatgatc aatagcctgt
    21121 ttaggattag tgatcctgac ttccttacca tcaatcaaca cagtcccctg atacgaaacg
    21181 aggccaaaga gcgccttcat cacatcggaa cgcccggccc ccaccaggcc aaaaaatccg
    21241 aggacctccc ccggacgcac agcgaaactg atctctttaa aaagcgaagg atgggaaaga
    21301 ttttttactt ccagttttgc aggaacattt tcatccggta tttccccaag acgtgctggc
    21361 caaatatttt tcatttcccg accaaccatt tgggcaatca aatgctggat atcactgttt
    21421 ttcttttcat gcgtggcgat atactcaccg tcgcggatca ccgaaatatc atctgaaatc
    21481 cgcataattt catccatgcg atgagagata taaataaccg cacagcctcg ctgctttaat
    21541 ttttcaataa tgttaaacag aatctccgct tcattatcac ttagcgaaga tgtcggttca
    21601 tccataatca cgacatccgc tgcatagctt aaggctttag caatttctac cagttgccta
    21661 tgtgccatcg acatattgcc gaccatttct agtgggtcta gtggtatgcc ccgttccgcg
    21721 aggagattct ggcaatctgc gagcattttt ttatcgttaa taatgccaaa acgtcgcggt
    21781 tcattattgg cataaatatt ttccgccacg gtcatattat tactcaggct caattcctga
    21841 aaaataatcg caattcctaa ctggcgtgaa tgctgcggat tattaatggt gatagtttca
    21901 ccacgtagtg ttatcgttcc ctgggttggc ggataaacac cggccagtat tttcattaat
    21961 gtcgatttac cggcaccatt ctcgcctaat aaagtatgca cccgcccttt acgtaaagag
    22021 agggtaatat cttttaatgc ttgaacatga ccaaatgtct tcgcaatatg cgaaacatca
    22081 agaataacat ccgtcataat gacctcggtg tcacaacaaa acgccaataa cgttttgttg
    22141 tgaggtgaag atgtttacta tttacctgta taaacgccgg gttgtaccgg gatcattttt
    22201 tctaccggtt taccattgag gtgatcaaca gcggcatcaa tggctttagc acccatttga
    22261 tcgggatatt gccgaatcac ggccgcaaac gttttttcac tgtcaacggc atcacgcgct
    22321 tctttcatgc catcaaaacc aatgattttg atgttgtcgt tatgcgcaga ttttgctgcg
    22381 ataaccgctg ccagcgccgc atcatcacca aagccaaaca gaccattcag gttggcattt
    22441 gcctgcataa tgttttgcgc agtcgttaac gcttcagccc gcgtaatact aggctgttca
    22501 gcaacaattt taatatccgg tgtatcgctt aaccctttct taaaaccatc aacgcgcgca
    22561 accaccgatt gtagtgccgg ataagaaata ctggctacag tacctttacc attcaaaagt
    22621 ttgcccatta acttgcctgc ttcaacgcct cccgcatagt tatcggtcgc aacatgcgat
    22681 acgaccggaa cgccttccgc agcgacgtcg acggtgataa cgggaatacc ggccttatcg
    22741 gctttaatta tcgccgcctg gacgcctttc gaatcgaccg gagagataat aatggcatcc
    22801 acttttttag taataaaatc ctcaacatca gaaagttgtt tgtttaaatc ctgattggca
    22861 aatag
//
LOCUS       DAJVUY010000058        22815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.058, whole genome shotgun sequence.
ACCESSION   DAJVUY010000058 DAJVUY010000000
VERSION     DAJVUY010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.058"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..740)
                     /gene="fsr"
                     /locus_tag="OQQ72_001989"
     CDS             complement(<1..740)
                     /gene="fsr"
                     /locus_tag="OQQ72_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS2011732.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSVGAVLLAAALVGTSSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASI"
     gene            958..2610
                     /gene="ushA"
                     /locus_tag="OQQ72_001990"
     CDS             958..2610
                     /gene="ushA"
                     /locus_tag="OQQ72_001990"
                     /EC_number="3.1.3.5"
                     /EC_number="3.6.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HCS2011733.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     AQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            complement(2647..3126)
                     /gene="ybaK"
                     /locus_tag="OQQ72_001991"
     CDS             complement(2647..3126)
                     /gene="ybaK"
                     /locus_tag="OQQ72_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HCS2011734.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(3330..4124)
                     /locus_tag="OQQ72_001992"
     CDS             complement(3330..4124)
                     /locus_tag="OQQ72_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HCS2011735.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            4262..4603
                     /locus_tag="OQQ72_001993"
     CDS             4262..4603
                     /locus_tag="OQQ72_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS2011736.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            complement(4818..7322)
                     /gene="copA"
                     /locus_tag="OQQ72_001994"
     CDS             complement(4818..7322)
                     /gene="copA"
                     /locus_tag="OQQ72_001994"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HCS2011737.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNPALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            7584..8516
                     /gene="glsA"
                     /locus_tag="OQQ72_001995"
     CDS             7584..8516
                     /gene="glsA"
                     /locus_tag="OQQ72_001995"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HCS2011738.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAVVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            8519..9811
                     /locus_tag="OQQ72_001996"
     CDS             8519..9811
                     /locus_tag="OQQ72_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2011739.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            9936..10343
                     /gene="cueR"
                     /locus_tag="OQQ72_001997"
     CDS             9936..10343
                     /gene="cueR"
                     /locus_tag="OQQ72_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HCS2011740.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(10344..10802)
                     /locus_tag="OQQ72_001998"
     CDS             complement(10344..10802)
                     /locus_tag="OQQ72_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS2011741.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS"
     gene            complement(10799..11716)
                     /locus_tag="OQQ72_001999"
     CDS             complement(10799..11716)
                     /locus_tag="OQQ72_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HCS2011742.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM
                     MPLEASSLMGSIAGIAELVKDSANKRTQP"
     gene            11862..12539
                     /gene="fetA"
                     /locus_tag="OQQ72_002000"
     CDS             11862..12539
                     /gene="fetA"
                     /locus_tag="OQQ72_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HCS2011743.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            12526..13305
                     /gene="fetB"
                     /locus_tag="OQQ72_002001"
     CDS             12526..13305
                     /gene="fetB"
                     /locus_tag="OQQ72_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HCS2011744.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(13368..14222)
                     /gene="cnoX"
                     /locus_tag="OQQ72_002002"
     CDS             complement(13368..14222)
                     /gene="cnoX"
                     /locus_tag="OQQ72_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HCS2011745.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(14283..15092)
                     /gene="ybbO"
                     /locus_tag="OQQ72_002003"
     CDS             complement(14283..15092)
                     /gene="ybbO"
                     /locus_tag="OQQ72_002003"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS2011746.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            complement(15082..15705)
                     /gene="tesA"
                     /locus_tag="OQQ72_002004"
     CDS             complement(15082..15705)
                     /gene="tesA"
                     /locus_tag="OQQ72_002004"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HCS2011747.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            15676..16362
                     /locus_tag="OQQ72_002005"
     CDS             15676..16362
                     /locus_tag="OQQ72_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2011748.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            16359..18770
                     /locus_tag="OQQ72_002006"
                     /pseudo
     CDS             16359..18770
                     /locus_tag="OQQ72_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415029.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            19199..22815
                     /locus_tag="OQQ72_002007"
                     /pseudo
     CDS             19199..22815
                     /locus_tag="OQQ72_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415030.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT         5248 a         5986 c         6455 g         5126 t
ORIGIN      
        1 ctgatgctcg ccatatagaa atatttcgag aaaatgagga ttaacagaat gctgactgcc
       61 agtaccactt tgttgcgcgg cagtggattg attatcgtcg ctttgggttt tcctttattc
      121 attcggtgct gtgccgagta ccaacggcta atttgcgcca acaccacgat cgccagcagt
      181 gccgcaagca caaaccaggc aacgttgcct ttgccataag gcgcgataat caccgccgtc
      241 agcaagggtc ccagggaact gccaaagttg ccgccgacct gaaagataga ttgcgccagg
      301 ccatgccgcc cgccggaagc catacgggct acgcgagaag attccggatg aaagaccgat
      361 gaactggtac cgaccagcgc cgccgccagc agaactgcgc caacactgcc cgccagcgca
      421 agcagcacca gaccacttaa ggtaaagcac atgccaattg gcaacgacca cggcatcgga
      481 tatttatcgg tccagtagcc gaccactggt tgcagtagcg aagaggcgag ctggaaggtg
      541 agggttatca tgccaatctg cataaatgtc agagaaaatt ctgactgaag cagaggataa
      601 atcgccagaa tcagcgattg gatcatgtcg ttcagcagat gtgagaggct gatagcacct
      661 aaaataccaa acgatgttcg ggccttggtc gttgacgcag ccgcgcccgc cacaggctgg
      721 gtttgttcac tcattgccat aggaaagtca ctttttcagg gttgcgatgt aaagaatgat
      781 cttatttgtg attattaccc gactaacata cctgtaagcg tcgcctgaag gaagtctcaa
      841 cgccgaatac agaatttcta atctggatgc agatttatct tcaccggacg cagacttgtc
      901 tattatgttg cgtcatacta tttttcaaca cgttgaaatc aggtcaggga gagaagtatg
      961 aaattattgc agcggggcgt ggcgttagcg ctgttaacca catttacact ggcgagtgaa
     1021 actgctctgg cgtatgagca ggataaaacc tacaaaatta cagttctgca taccaatgat
     1081 catcatgggc atttttggcg caatgaatat ggcgaatatg gtctggcggc gcaaaaaacg
     1141 ctggtggatg gtatccgcaa agaggttgcg gctgaaggcg gtagcgtgct gctactttcc
     1201 ggtggcgaca ttaacactgg cgtgcccgag tctgacttac aggatgccga acctgatttt
     1261 cgcggtatga atctggtggg ctatgacgcg atggcgatcg gtaatcatga atttgataat
     1321 ccgctcaccg tattacgcca gcaggaaaag tgggccaagt tcccgttgct ttccgcgaat
     1381 atctaccaga aaagtaccgg cgagcgcctg tttaaaccat gggcgctgtt taagcgtcag
     1441 gatctgaaaa ttgccgtcat tgggctgaca accgatgaca cagcaaaaat tggtaacccg
     1501 gaatacttca ctgatgtcga atttcgtaag cccgccgatg aagcgaagct ggtgattcag
     1561 gagctgcaac agacagaaaa gccagacatt attatcgcgg cgacccatat ggggcattac
     1621 gataatggtg agcacggctc taacgcaccg ggcgatgtgg agatggcacg cgcgctgcct
     1681 gccggatcgc tggcgatgat cgtcggtggt cactcgcaag ctccggtctg catggcggca
     1741 gaaaacaaaa aacaggtcga ttacgtgccg ggtacgccat gcaaaccaga tcaacaaaac
     1801 ggcatctgga ttgtgcaggc gcatgagtgg ggcaaatacg tgggacgggc tgattttgag
     1861 tttcgtaatg gcgaaatgaa aatggttaac taccagctga ttccggtgaa cctgaagaag
     1921 aaagtgacct gggaagacgg gaaaagcgag cgcgtgcttt acactcctga aatcgctgaa
     1981 aaccagcaaa tgatctcgct gttatcgccg ttccagaaca aaggcaaagc gcagttggaa
     2041 gtgaaaatag gcgaaaccaa tggtcgtctg gaaggcgatc gtgacaaagt gcgttttgta
     2101 cagaccaata tggggcggtt gattctggca gcccaaatgg atcgcactgg tgccgacttt
     2161 gcggtgatga gtggaggagg aattcgtgat tctatcgaag caggcgatat cagctataaa
     2221 aacgtactga aagtgcagcc attcggcaat gtggtggtgt atgccgacat gaccggtaaa
     2281 gaggtgattg attacctgac cgccgtcgca caaatgaagc cagattcagg tgcctacccg
     2341 caatttgcca acgttagctt tgtgacgaaa gacggcaaac tcaacgacct gaaaatcaaa
     2401 ggcgaaccgg tcgatccggc gaaaacttac cgtatggcga cattaaactt caatgccacc
     2461 ggcggtgatg gctatccgcg ccttgataac aaaccgggct atgtgaatac cggctttatt
     2521 gatgccgaag tgctgaaagc gtatatccag aaaagctcgc cgctggatgt gagtgtttat
     2581 gaaccgaaag gtgaggtgag ctggcagtaa tccgaaagtg ccggatattt gcatccggca
     2641 caatgcttaa tcgcggcggg cgatatcagc aaatttggca tcgaggatct tcgccagatc
     2701 gcctgccgcc agttcgatat ccagtccgcg cttgccgcca gaaacataaa tagtggcaaa
     2761 ttcttgtgcg ggggcgtcga taatcgtcgg cagacgtttt ttctgcccca gtgggctaat
     2821 ccccccaacc aggtatcccg tcgaacgctg cgcggccatc ggatcggcca tctcaacttt
     2881 cttggcaccc agcgcttttg ctactttttt aagatccagt tgacctgcga ccggcgtaac
     2941 ggccactgcc agatgtttca tatcaccgtt cactgccacc agtagcgttt tgtagacttg
     3001 atccggattc aaacctaatt ttttgacgac ttcatcgcca aaattggttt cagccggatc
     3061 gtgctcgtag gtatggattt gaaacgaaat cttgtttttt tcgagtaatt taactgcggg
     3121 tgtcatggta attttcctgc cttaaacaaa aaaacgaagc aagcatacgc ctgatggcgg
     3181 tccaaaaaaa agagtcatct tgcctaagag tattggcagg atggtgagat tgagcgacaa
     3241 tcgagttaca ccgtcgctta aagtgacggc ataataataa aaaaatgaaa ttcctctttg
     3301 acgggccaat agcgatattg gccatttttt tagcgcaaca tttgcggcaa attcccttct
     3361 ccatacaggt gtagtgcacc gaccgcgacc acatatcgcc ccggcggcat ggcgcgtaat
     3421 ttatcccgcc aggcgagatt tcgctgatgc atcagcacat cgtacagcga ctgactgaac
     3481 gtattgggca gcgttatatc attattttgc ggaggtgcat tcagccacca gctcatcatt
     3541 tgttgcagca accgtgcgtt ggtatgccag tgggtcagcg tatcgtccag cagcgccagt
     3601 cctttgtcag ggagctggag caacatggta atctggtttt cagccccttc cagttcaatc
     3661 acgggtttat gttgttgctt cgccgcctgc aataactggt aatcgatacc gtattctgcc
     3721 cgcagcccca gtttttgtgc ctgcgtcgcc tgaagaacca tcgcgatttg ccacagcggt
     3781 tgagtagaaa agagcgacgg agaaatgccc atctcctggc taatgtgctg cagattttgg
     3841 agttgctcct cgttaatgcg ctcttccagc gcctcgcaag taggcaaatt agcaaaaggc
     3901 gtatcgctgg tggaaacatc cgcctcgacg atcagcgcat cggcgttttt gagctttttg
     3961 agcaaacggg tgggcagggg agtcatatcg tggctaccca tatgaatact gccaatcaga
     4021 tgaaaatggc gattgccggg aagggtgata tcgatggcag gccaggtgta atgattaccg
     4081 cgcagcgcgg cccaaagcgt ttttacccgg tacaacagat ccatacgacc tccctttgtg
     4141 aaatatcatg ctagcgcgcg gtgagggatg gcgcaaatgg agttggggac ttgtttaatg
     4201 tgtttgtatg attcagtatg ttcttgcatc gctattcaca gggaagcaac agttaaaaac
     4261 catgaaacag gcaacaagaa aaccgacgac acccggagat attcttctct atgaatatct
     4321 ggaaccgctc gatttgaaaa tcaatgagtt agcagagttg ctgcatgttc atcgtaatag
     4381 cgtcagtaca ctgatcaata ataatcgtaa actcaccact gagatggcat tccgtctggc
     4441 gaaagttttt gataccacag tcgatttttg gctaaacctc caggcggcag ttgatctttg
     4501 ggaagttgaa aacaacatgc gcacccagga agaattggga cggattgaaa cagtggctga
     4561 atatttggca cgccgtgaag agcgtgcaaa aaaggtcgcg taaggccaaa acatcgcttc
     4621 atctcgtagg ccggataagg cgttcacgcc gcatccggca tccgagcacc attgcctgat
     4681 gcgacgctta cccgtcttat caggcctaca aacctgtgcc tgaaccgtag gccggataag
     4741 gcgtttacgc cgcatccggc agtcatgcgt cgatgccaaa tgcgccgccc taaagcagcg
     4801 catccgcaat gacgtactta ttccttcggt ttaaaccgca gcaaccggtt ggcgttactc
     4861 actacggtaa tcgacgagag cgccattgcc gctccggcaa ctaccgggtt aagcagtgtt
     4921 ccagtaaacg gccacaaaat accagcggcg accggaatac caatgctgtt gtagataaac
     4981 gcaccgagca ggttctgctt catattgcgc agcgttgcgc gggaaatcgc gagcgcatct
     5041 gcaacaccca tcaggctatg gcgcatcagg gtaatcgccg cggtttcaat ggcaacatca
     5101 ctgccgccac ccatcgcaat accgacatcc gcctgagcca gcgctggcgc gtcgttaatg
     5161 ccgtcgccca ccattgccac ctgacgtcct tcactttgca gacgtttgat cgcttcggct
     5221 ttaccgtctg gcagcacccc ggcgattacc tcatcaatcc ctgcttcttt ggcgatcgca
     5281 ttggcggtgg ttgggttatc cccggtcaac atcaccagac gatatcccgc tttatgcagg
     5341 cgttgcagcg ccgccacgct atcactacgc aacggatcgc gtacagccag cagggctact
     5401 actttcccgt caatcgccag cagcacaggc gttgctcctt gcgatgcctg agctgaaata
     5461 tcggcttcaa tcgctttagt atcgacttgc tggtcattta acagcgccgg attacccagc
     5521 aataacgcat gaccttcagc ttcaccgctt acgcccagcc cgcgcaatgt gcggaaaccg
     5581 ttgacctgcg gcagctgcat atcgcctgct ttatcgagga tcgctcgtgc cagcggatgg
     5641 ctggaacctt gctccagcgc cgccgccaga cgcaatgctt gcgcttcatc aacatcagca
     5701 aatgttttta ctgcgacaac ctgcggcttc ccttcggtca gcgtcccggt tttatcgaac
     5761 acgacggtat cgagtgtact ggcgcgttgc agcgcgtcgg cgtcccgcac cagcacgcca
     5821 aactcagccg cccgcccgac gccggaaata atcgacattg gcgtcgccag ccccagcgca
     5881 cacggacagg caataatcag caccgtggtg gctatcacca gggtatagac aatctgcggt
     5941 gccggaccaa agaaatacca gattgctgca ctgatcagcg caatcaccac tactaccggc
     6001 acaaatacgg ctgagatttt atccgccagc tgaccgattt ctggcttgct gctctgggcc
     6061 tggcgcacca tgcgaataat ccttgacagc gtggtatggc tgccaaccgc actggcgcga
     6121 aatagcacgc taccgtcctg taccactgtc ccggcatgga cgctttcgcc ttcgcctttt
     6181 tgctgcggga ttggttcgcc cgtcagcatc gcttcatcca gccatgcttc gccctgggta
     6241 atctcgccat ctaccggcac gcgatcgccg gtcgtcaggc gcagtaacat ccctggctga
     6301 acttccgcca gcggcacgct tttttcaccc tctgcggtga ccactcgcgc cgtcggtggg
     6361 gttaaatcga gtaatttctc cagcgcctta gaagaacgct gacgcgcgcg cgcttccagc
     6421 atatggccga gattaatcag accgataatc atcgcactgg cttcatagta aagatgccgc
     6481 gcttccatcg ggaaccactg cggccacagg ttgacgctca tcgaatagag ccacgccaca
     6541 cccgtaccca gcgccaccag cgtatccatc gtcgccgcac cgttcagcag gcttttccac
     6601 gcgctgcggt aaaaatgccc gccggcgaaa accattaccg ccagggttat caggccgata
     6661 actaaccaca ggctgcggtt gtcagcggtg accatcatgt tatcgccgat catcccccag
     6721 accattaccg gaatacccac cgccagtgcg acaatcgcct gccagcggaa gcgcttcatc
     6781 gtagcgacgg cggtttcctg ctggcgctcg cggcgtttcg cgtcatcttc aatcgcttcc
     6841 gcgccgtagc ccgctttttc caccgcctgc actaaatctt gtggggaggc actgcccatc
     6901 accagcgcag tacgctccgc caggtttacc cgtgcctgag tgacgcccgg tacgctttgc
     6961 agcgcatttt gtacgcgggt gacacagctg gcgcagctca tgccgctcag cagcaactgc
     7021 tggctgtcat cgtcatcggc ggtcgctgcc ggaagcgcct cagaaaccgc tgtcagtgct
     7081 tccgacggga ttgatgactc cgccagcggt ttagcctttg ggtggcttac agatgcgtca
     7141 taacccgctt gtttgatggt ttcgatcagc tgttctgcac tggcagtccc ggtaacgtgc
     7201 gcttcagtga tagacacatc cgcttgttcc acatccgggc gctgttcgag actttctttc
     7261 acgcgtttaa cgcagtgacc gcaggacagg ccgtccaggg tcaggtcgat agtttgtgac
     7321 ataaaacact cctttaagac agttttgact ggctgtgata aaggttaaac cttccagcaa
     7381 ggggaaggtc aagaaattaa taaaccaggc gggtaaaagt ccgtaaagat taaaaaatcg
     7441 gctcgatttg catcaggatt agacatttat ttctttgttt tcctgtagtt aagttgctgg
     7501 tgctaagtta aatcaggatg cctgaaaatc ggcaccgggg tgaggaatta cctcccgcat
     7561 ctataaaaag gagttaacaa aagatgttag atgcaaacaa attacagcag gcagtggatc
     7621 aggcttacac ccaatttcac tcacttaacg gcggacaaaa tgccgattac attccctttc
     7681 tggcgaatgt accaggtcaa ctggcggtag tggctatcgt gacctgcgat ggcaacgtct
     7741 atagtgcggg tgacagtgat taccgctttg cactggaatc catctcgaaa gtctgtacgt
     7801 tagcccttgc gttagaagat gtcggcccgc aggcggtaca ggacaaaatt ggcgctgacc
     7861 cgaccggatt gccctttaac tcagttatcg ccttagagtt gcatggcggc aaaccgcttt
     7921 cgccactggt aaatgctggc gctattgcca ccaccagcct gattaacgct gaaaatattg
     7981 aacaacgctg gcagcgaatt ttacatatcc aacagcaact ggctggtgag caggtagcgc
     8041 tctctgacga agtcaaccag tcggaacaaa caaccaactt ccataaccgg gccatagcct
     8101 ggctgctgta ctccgccgga tatctctatt gtgatgcaat ggaagcctgt gacgtgtaca
     8161 cccgtcagtg ctccacgctc atcaatactg ttgaactggc aacgcttggc gcgacgctgg
     8221 cggcgggtgg tctgaatccg ctgacgcata aacgcgttct tcaggccgac aacgtgccgt
     8281 acattctggc cgaaatgatg atggaagggc tgtatggtcg ctccggtgac tgggcgtatc
     8341 gcgttggttt accgggcaaa agcggtgtag gtggcggtat tctggcggtc gtccctggcg
     8401 tgatgggaat tgccgcgttc tcaccaccgc tggacgaaga aggtaacagt gttcgcggtc
     8461 aaaaaatggt ggcatcggtc gctaagcaac tcggctataa cgtgtttaag ggctgatcat
     8521 gatgaacacg gaaggtaata acggtaacaa acccctcggt ctatggaatg tcgtttccat
     8581 cggtattggg gcaatggtgg gggcggggat cttcgcgctg ctggggcagg ctgcgttgct
     8641 aatggaagcc tcgacctggg tcgcctttgc ttttggcggt attgtggcga tgttttccgg
     8701 ttatgcctat gcgcgtctgg gggcgagcta tcccagcaat ggcggcatta tcgacttctt
     8761 tcgtcgcgga ttaggcaacg gcgtcttttc gctggcgctc tcgttactgt acctgttgac
     8821 gctggcggtg agcatcgcca tggtcgccca tgcttttggc gcttatgccg tgcagttttt
     8881 gcatgaaggc agccaggagg agcaccttat tttgctctac gcgttgggga gcattgcggt
     8941 gatgacgctt ttcaactcct taagcaacca tgcggtaggg cggctggaag tgatcctcgt
     9001 cggcattaaa atgatgatcc tgttattgct gattattgcc ggtgtctggt cgctgcaacc
     9061 agcgcatatt tccgtctctg cgccccccag ctccggtgcg ttcttctcct gtattgggat
     9121 aactttcctt gcctatgcgg gctttggcat gatggcgaac gcggcggata aagtgaaaga
     9181 tccgcaggtc attatgccac gggcgtttct ggtggcgatt ggcgttacca cgttgcttta
     9241 tatctcgctg gcactggttt tgcttagcga tgtatcggca ttagagttag aaaaatatgc
     9301 cgataccgcc gtagcgcagg ctgcttctcc gctgctcgga catgtgggtt atgtgatcgt
     9361 cgtcatcggc gctttactgg cgacggcttc agccattaac gcgaacctgt tcgccgtgtt
     9421 taacatcatg gacaacatgg gcagcgaacg cgaactgccg aagctaatga ataaatccct
     9481 gtggcggcag agtacctggg gcaacatcat tgtcgtggtg ttgattatgc tgatgacggc
     9541 ggcactgaat ttaggctcac tcgccagcgt tgccagcgcc acctttttga tttgctacct
     9601 ggcggtgttt gtggtggcga tccgcctgcg tcatgatatt cacgcctcgt tgccgattct
     9661 tatcgttggt acgttggtga tgttgttggt gatcgttggc tttatctaca gtctgtggtc
     9721 ccagggtagc cgtgcgttga tatggattat tggctcactc ttactcagcc ttattgtggc
     9781 aatggtcatg aagcgcaata aaaccgtata acatctctct gtgcgcagta cttcctgtat
     9841 tattgtggtg gcggtcgata ttcgcactgg caaaaaaacg tgcttgaata tctgttgaaa
     9901 ccctttaaca aagcacagga ggcgttgcgc gaacgatgaa catcagcgat gtagcaaaaa
     9961 ttaccggcct gactagcaaa gccattcgct tctatgaaga gaaggggctg gtgacgccgc
    10021 cgatgcgcag cgaaaacggt tatcgcacct acacgcagca gcatctcaac gaactgacct
    10081 tactgcgcca ggcacggcag gtgggcttta acctggaaga gagcggcgag ctggtgaatc
    10141 tgtttaacga cccgcagcgg cacagcgccg acgtcaaacg gcgcacgctg gagaaggtgg
    10201 cggagatcga acgacacatt gaggagctgc aatccatgcg cgaccagctg ctggcactgg
    10261 cgaatgcctg ccctggcgat gacagcgccg actgcccgat tatcgaaaat ctctccggct
    10321 gctgtcatca tcgggcaggg tgattaagac gagacggctc ggatatgtag ggttatccct
    10381 tctatcgcaa tgacttcaac atgcgtacct gcaccgagat cctcgctggc gctgacaggc
    10441 catgaactgt caccgacgcg catatgaccg cgcccgttga ccagcggaga ttccagcaca
    10501 aaacgtcggc caatcagctg ctgcccgcgc tggtttaaat gactatcgct gtgcttttgt
    10561 tcgcgcaccc gccgcgacaa ccatttccac cacagccagg cggcgagcag cgtcaggatg
    10621 gcaaacatta ccccttgcca ctcccaaccc agcggcacca gccagaccac caggccggta
    10681 atcaccgctg ccacgccgct ccacaacaaa taaccatttc cgcccagcat ctcggctgcc
    10741 agcagcaaac cgccgagact gagccagaaa atatgtggat gaacgaccat taactccatc
    10801 atggctgagt ccgtttgttg gcgctgtctt tcaccagttc ggcaatcccg gcaatcgacc
    10861 ccatcaggct gctggcctct aatggcatca tcactacttt gctgttactg gaggaaccga
    10921 tctgctgtaa cgcttcggtg tatttctgcg ctacgaagta gttcaccgcc tgaatatcac
    10981 cggaggcgat agcttcagac accattttgg tggcgcgggc ttctgcttcg gcggaacgtt
    11041 cacgcgcttc agcctgtaaa aacgccgact gacgttcgcc ttccgctttc aggatttgcg
    11101 actgtttttc accttcggct ttgaggattt ccgcctgacg gatcccttcc gcttcaagaa
    11161 tgtaagcgcg tttggtacgt tccgctttca tctgcgcgtt cattgaagag ataagctctg
    11221 ccggtgggcg cacgtcgcga atttcaatac gggtgacttt aatcccccac gggttggtgg
    11281 cttcatcgac aatacgcagc aggcgtgagt tgatgctgtc gcgctgagag agcatttcgt
    11341 caagttccat tgaacccaac acggtacgga tgttagtcat ggtcaggttg atgatcgcca
    11401 gctccagatt gctgacttca taggcagcgc gtggcgcgtc aatcacctga ataaaacaga
    11461 ctgcgtcgat ggtaacgttg gcgttatctt tcgagataac ttcctgggaa gggatatcga
    11521 gcacttgctc catcatattg atcttgcgac caatgcgatc cataaacggc accaccagac
    11581 tgagccccgg ctgtaacgtt ttggtatagc gaccaaaacg ttctaccgtc cattgatagc
    11641 cctgcggcac gattttgacg cccgcgccga caatgaccag cgcgacaaaa atgagaatcg
    11701 ggataaagat aagcatcgga aaaacctcct gttgtaccgt ccataatcag caaaattgct
    11761 gcttgattaa acaaattata cctgattact gaaagagagt tcccccttat tcctgcgaag
    11821 gataaactgt ttttagtaaa aatcagaaaa agggaacagc gatgcaggaa aatagtcctt
    11881 tgcttcagct acaaaacgta ggatatctgg cgggtgatgc gaagattctt aataacatca
    11941 atttttcgct gcgtgctggc gaatttaagt taattaccgg tccttctggt tgtggcaaaa
    12001 gtacgctgct aaaaatagtt gcttcattga tcagcccaac cagcggaacg ttactgtttg
    12061 aaggtgagga tgtcagcaca ctaaagccag aaatctaccg ccaacaagtc tcttactgcg
    12121 cccagacacc gacgctgttt ggcgatacgg tatacgataa tctgatcttt ccctggcaga
    12181 tccgtaaccg gcagcctgac ccagccattt ttctcgattt tctcgaacgc ttcgccttgc
    12241 cggacagcat tttgacgaaa aatatcgccg agctatctgg tggtgaaaaa caacgcatct
    12301 cactgattcg taacctgcaa tttatgccga aggttttatt gctggatgaa atcaccagtg
    12361 cgctggatga aagtaataaa cataacgtta atgagatgat ccatcgttat gtgcgcgagc
    12421 aaaatattgc cgtgctgtgg gtgacacacg ataaagacga aattaatcat gcggataaag
    12481 tgattacact gcaaccgcat gccggagaaa tgcaggaagc acgctatgaa ctcgcataat
    12541 attactaacg aatcattggc actggcatta atgctggtgg tggtggcaat cttaattagc
    12601 cataaagaaa aactggcgct ggagaaagat attttctgga gcgtcgggcg cgcgataatt
    12661 cagctgatta ttgtcggcta tgtgctgaag tatattttca gcgtggatga tgccagcctg
    12721 acattattga tggtgttatt tatctgcttt aatgcggcgt ggaacgcgca aaaacgcagt
    12781 aaatatattg ctaaagcttt tatctcatcg tttattgcca ttacggttgg ggcgggaatt
    12841 accctggcgg tgctgattct ctcagggtcg attgaattta tcccgatgca ggtgatccct
    12901 atcgccggga tgattgccgg taacgccatg gtagcggtgg ggttgtgtta caacaattta
    12961 gggcaacggg tcattagcga acagcaacag attcaggaga aactgagtct tggcgcgacg
    13021 ccgaagcagg cttcagcgat attgattcgc gacagtattc gcgcggcttt aattccgacg
    13081 gtcgattcag caaaaacggt tggcttagtg agtttaccag gaatgatgtc cgggctgata
    13141 tttgccggga ttgatccggt gaaggcgatt aaatatcaga ttatggtgac ctttatgctg
    13201 ctctcaaccg ccagcttgtc gaccattatt gcctgctatt taacctatcg taagttttat
    13261 aattcgcgcc accagttggt ggtgacgcaa ttgaagaaga aatgatgcga tgccggatgc
    13321 gcagcatcgc atccggcgtt gtggttcatg tgccgaacaa cggaatatca atacaacaat
    13381 gcatacagct ggcggcgata cttcgacgcc agtgcatcac ccgtacccag cgcagcgagg
    13441 atctcctgga acgttttacg cgtctgaccg tctgcggcgg tgagatcttt acgcagatgc
    13501 ccgaacagca actccagcgc ctcttcattg cgcccaacct gatgcagttg cagcgccagt
    13561 tgcgtcgcca gtgcggcatc ttctggattc tccgccacct gctgttgcaa ctgttgaatt
    13621 tccggcgtat cagccgcctg cttcagcagt tcgatttgcg ccaccagccc ctggtagcgg
    13681 gtgtcctgat cctgcaacgg aatggttttc agcaccgctt ccgcatcttc agaacggttc
    13741 agcgcaatca gcgtttctgc cagcagcagg ccgatctccc cgttctgatt cgacaactgc
    13801 caggcgtctt tcagcaatgg cagggcatcg gtgtaattgc cttcctgcat cagttgcatc
    13861 gcctgctgcg ctttcagctc ttcttcgcgc ggcagcactt tatccagcag ggcgcggatc
    13921 gcctcttccg gttgcggccc ctggaagcca tctaccggtt gcccgttctg gaacagatac
    13981 acggtcggaa tcgcgcgcag accaaactgg gcggcaatca tctgctccgc gtcgcagtcc
    14041 agcttcgcca gaataaattg cccgttgtac tgcgccgcga ggctttccag gatcggggtt
    14101 aactgcaaac agtgctggct acgttcagac caaaaataga acagcaccgg agtggtcatc
    14161 gactgttcaa gaacctgttg caggttagat tcgttaatgt tgacaatatt ttctacggac
    14221 atggagtcgc tctctgttgt cgatattttc tttgacatgg gggcttaagc gcgcgcttca
    14281 actcacccct gcaatatttt gtccatcacg cgcccaggca gcaggcgctt gagcaccatt
    14341 actgcccagg tcaccagcgt taccggatag cgcatcttcg gcttctcgct aataaaagca
    14401 tggcgcactt tgtcgaccac cgcttccggt cccaacgtaa agcgggcggc gatgccggga
    14461 ttttcgactg gtttatcact ttgcgtctgg ttgacgttgt cggtgaagcg agtacgaatg
    14521 ggaccgggtt cgatcaggct gactttaatt ccgctgtggc gtagctccat gcgcagcgcg
    14581 tctgaccacg cctccagcgc atatttactg gccgcgtaag cgccacgacc cggcgtggag
    14641 attaatccca tcaccgatga tgtcatcaca atacgccctt caccgtgcgg taacatcgcg
    14701 ggtaacaggc gcatggtgag ctggtgtgcg ccgaaaaagt tggcggaaaa ctgctgttcc
    14761 atctgcgcac ggctgatggt ggaaaggggg ccatacatgc cgaatccggc attgttaaag
    14821 atcccataca gacaattatc ggtcagggcg atcacctcgt ctgctgcgcg atcaacactt
    14881 tctggtgaat ccagatcgat caacacgccg gtaaatccca tgttgttcat acgctcaaca
    14941 tcatccggtt ttcggcaacc tgccagcaca tgaaaaccct ggcgttttaa ttcgagcgcg
    15001 ctttccaggc caattccact ggaacatccg gtaattaaga ccgatttttg cataacttta
    15061 cctgtcagga tctccgttgc tttatgagtc atgatttact aaaggctgca actgcttcgc
    15121 catccagtcg gcaataaacg gctgggcgtc gcggttggga tgaataccgt catcctgcat
    15181 ccattgtggc ttgaggtaga cctcttccat aaaaaagggc agcagcggaa catcaaactc
    15241 tttggcgagt ttggggtaaa tggcgctaaa ggcttcatta taacggcgac catagtttgc
    15301 aggcagacgt atttgcatta acaatggttc agcgttggcg gctttgacat cctgcaaaat
    15361 ctggcgcagc gtttgctcgg tttgctgtgg ctgaaaacca cgcaaaccgt cattgccgcc
    15421 cagttcaacc agcacccagc gcggctgatg ctgtttcagc agagccggaa ggcgcgccag
    15481 tccttgttgc gaggtgtcgc cgctgatgct ggcattaact accgacgttt tactctgcca
    15541 cttatcattc aacaaggcag gccaggccgc gctggcagac attcgatacc cggcgctcag
    15601 gctatcaccc agaatcaata acgtgtccgc tgcggcggca cggaaggtta acaggaccag
    15661 gaacaggaag ggcaaatgcc agcggaaaac attgttgaag ttcatcatct taagaagtcc
    15721 gtcggtcagg gggagcatga actctccatc ctcaccggag ttgagctggt tgtcaaacgt
    15781 ggcgagacca tcgcactggt gggcgagtcg ggatcgggta agtcaacctt gctggcgatc
    15841 ctcgccgggc ttgatgacgg cagcagtggc gaagtgagtc tggtgggaca accgctacat
    15901 aatatggacg aagaagcgcg ggcaaagttg cgcgcgaagc acgtcggctt tgtttttcag
    15961 tcatttatgt taattcctac ccttaacgcg ctggaaaacg tcgagcttcc ggctctgctg
    16021 cgcggtgaga gtagcgcgga aagtcgtaac ggggcgaaag cgttgctcga acagttaggg
    16081 ctgggtaaac gtctggatca tcttccggca cagctttccg gcggtgaaca gcaacgagtg
    16141 gcgctggcac gagcctttaa tggtcgacct gatgtgctgt ttgccgacga acccaccggc
    16201 aaccttgacc gccagacggg cgataaaatt gccgacctgc tgttttccct caaccgtgaa
    16261 catggcacca cgttgattat ggtgacccac gacctgcaac tggcggcacg ctgcgaccgc
    16321 tgcttacggc tggtgaacgg gcagttgcag gaggaagcat gattgcacgt tggttctggc
    16381 gcgaatggcg ttcgccgtcg ctattaattg tctggctggc gctaagcctg gcggtggcct
    16441 gcgtgctggc gctgggcaat atcagcgatc gcatggagaa gggcttaagc cagcaaagcc
    16501 gtgagtttat ggcgggcgat cgggcgttgc gcagttcacg cgaagtgccg caagcgtggc
    16561 tggaggaagc gcaaaagcgc ggcctgaaag tcggcaagca gctgactttc gccacaatga
    16621 cctttgcagg cgacacaccg cagctggcga acgtcaaagc ggtggatgat atctacccga
    16681 tgtatggcga tctgcaaact aatccccctg gcctgaaacc gcaggcgggc agcgtattgc
    16741 tggccccacg cctgatggca ctgcttaacc tgaaaacggg cgacaccatt gacgtgggcg
    16801 atgccacctt gcggattgcc ggagaagtga ttcaggaacc ggattccggt tttaacccct
    16861 tccagatggc tccgcgtctg atgatgaatc tggcggatgt cgataaaacc ggagccgtgc
    16921 agccggggag tcgggtcacc tggcgttata aattcggcgg caacgagaac cagctcgacg
    16981 gctatgagaa atggttgtta cctcagctta aacccgaaca acgctggtac ggtctggaac
    17041 aggacgaagg cgcgctgggg cgatcgatgg aacgctcgca acagttcctg ctgctttcgg
    17101 cgcttctgac cttgctgctg gcagtggcag cggtggcggt agcgatgaat cattactgtc
    17161 gcagtcgcta cgatctggtg gcgatcctca aaacgctggg ggcagggcga gcgcaactgc
    17221 gtaagctaat cgtcggtcag tggttgatgg tgctgacgct ttcagccgtt accggtgggg
    17281 ccataggcct gttgttcgaa aacgtgttga tggtgctgct caagcccgtt ctgcctgctg
    17341 cactaccgcc agccagcctc tggccgtggc tgtgggcgct tggcaccatg acggtcatct
    17401 cgctgctggt ggggctacga ccataccgct tgttgctggc aacgcagcct ttacgcgtat
    17461 tacgtaatga tgtggtagcg aacgtctggc cgctgaagtt ttatctgccg attgtcagta
    17521 tggtggttgt gctgctgctc gccggattaa tgggtggcag catgctgctt tgggcggtgc
    17581 tggcgggcgc ggtagtactg gctttgctgt gcggtgtgct gggctggatg cagctgaatg
    17641 tactttgccg catgacgctg aaatcgctac ctctgcgcct ggcggttagc cgcctgttac
    17701 gtcagccgtg gtcaacgtta agccagcttt cggcattttc gctctccttt atgctgctgg
    17761 cgctgttgct ggtattgcgt tgcgatctgc tcgaccgctg gcagcagcta ccgccagaaa
    17821 gcccgaacta ctttttaatt aacatcgcca cagaacaggt agcaccgcta aaagcgttcc
    17881 tcgcggaaca tcatatagtc ccggaatcat tttatccggt agtgcgggcg cggctgacgg
    17941 cgattaacga taagccgaca gaaggtaatg aagatgaggc gcttaatcgc gaactcaatc
    18001 ttacctggca aaatacgcgg cccgatcata atccgattgt cgccggtaac tggccgccaa
    18061 aagccgatga agtgtcgatg gaagaggggc tggcgaaacg cttaaacgtt gccctcggtg
    18121 gtaccgtgac ttttatgggc gatacccagg agttccgcgc taaagtgacc agcctgcgca
    18181 aagtggactg ggaaagtctg cggcctaatt tctattttat tttcccggaa ggggcattag
    18241 acgggcaacc gcagagctgg cttaccagtt tccgctggga gaatggcaac ggcatgttga
    18301 cgcaactcaa ccgccagttc ccgaccatta gcctgttaga tattggcgcg attttaaaac
    18361 aggtcggtta ggtgctggag caggtaagtc gggcgctgga ggtgatggtg gtgctggtca
    18421 ccgcctgcgg tatgttgctg ttgctggcac aggtgcaggt gggaatgcgc cagcgtcatc
    18481 aggagctggt ggtatggcgc acactcggtg cggggaaaaa actgctgcgc acgacattgt
    18541 ggtgtgagtt cgccatgctt gggtttgttt ccggcctggt ggccgcaatt ggtgcggaaa
    18601 cggcactggc agtgttgcag gcgaacgtgt ttgatttccc gtgggagcca gactggcgat
    18661 tgtggattgt tctgccgtgc agcggtgcgc tgctgctgtc gcttttcggc ggctggctgg
    18721 gggcgcgact ggttaagggt aaggcgctgt tcaggcagtt tgcggggtga tgagagtaaa
    18781 taaggggcgt tctggttgaa tggaacgcct tgtttaaatt aattctacaa tatgtttcat
    18841 tgatgatgtt attgaattgg tgatttccta tctttctatt gctgatatta atctgaattg
    18901 gtggagttta ataattttaa atatagccct acaaaaataa ctcagactaa taaaatcata
    18961 aatcatatgc gttgaatgga tattatccat atagtgaatt tgttgatgat gaattcatct
    19021 gtgctaaaaa ttttagttta ataaaatatt gaaagtgacc tgtaataaca gttattgttg
    19081 attgagaaca aataagttta tgtgaaaaat atataaatac attagctggt catgtgtgtc
    19141 attttatttt tttgttgcta acacagggat atgaacaata actaaaaggg cactttatat
    19201 gagcggaaaa ccagcggcgc gtcagggaga tatgactcag tatggcggtc ccattgtcca
    19261 gggttcggca ggtgtaagaa ttggcgcgcc aactggcgtg gcgtgctcgg tgtgtccggg
    19321 cgggatgacc tcgggcaacc cggtgaaccc gctgctcggt gcaaaagtac agcccggcga
    19381 gacggacctt gcgctgcccg acccgctgcc gttcattctc tcccgcacct acagcagcta
    19441 ccggacgaag acgcctgcgc cagtgggaac tttttggccc cggctggaaa gcgccttctg
    19501 atatccgctt acagatacgc gatgatgcac tggtactcaa cgacaacggc gggcggagca
    19561 ttcactttga gccgctgctg ccggggaagg ctgtgtacag ccgcagtgag tcaatgtggc
    19621 tggtgcgtgg cggtaaggca gcgcagccgg acggccacac gctggcacga ctgtgggcgt
    19681 cgctgccgcc ggatatccgg ttaagcccgc atctttacct ggcgaccaac agcgcacagg
    19741 ggccgtggtg gatactgggg tgatctgagc gggtgccggg tgctgaggac gtactgccag
    19801 cgccgctgcc gccgtaccgg gtgcttaccg ggatggcgga ccgcttcggg cggacgctga
    19861 cgtaccggcg tgaggccgca ggcgacctgg ccggggaaat caccggcgtg acggacggtg
    19921 ccgggcggga gttccgtctg gtgctgacca cacaggcgca gcaggcggaa gaggcccggc
    19981 agcaggcggt cgtcgccgga gcaaaacgac cggacattcc tgattcactg ccggagagca
    20041 cagagtacgg ccccgacagg ggtatccgcc tttcggcggt gtggctgatg cacgacccgg
    20101 catacccgga gagcctgccc ggtgcgccac tggcgcggta cacgtatacg gaagccggtg
    20161 aactgctggc ggtatatgac cgcagcaata cgcaggtgcg cgctttcacg tatgacgcgc
    20221 agcacccggg ccggatggtg gcgcaccgtt acgcgggaag gccggagatg cgctaccgct
    20281 acgacgatac ggggcgggtg gtggagcaac tgaacccggc agggttaagc taccgctatc
    20341 tttatgagca ggaccgcatc accgtcaccg acagcctgaa ccggcgtgag gtgctgcata
    20401 cagaaggcgg ggccgggctg aaacgggtgg tgaaaaaaga actggcggac ggcagcgtca
    20461 cgcgcagcgg gtatgacgcg gcaggaaggc tcacggcgca gacggacgcg gcgggacggc
    20521 ggacagagta cggtctgaat gtggtgtccg gcgatatcac ggacatcacc acaccggacg
    20581 ggcgggagac gaaattttac tataacgacg ggaaccagct gacggcggtg gtgtacccgg
    20641 acgggctgga gagcagccgg gaatatgatg aaccgggcag gctggtatcg gagacatcgc
    20701 gcagcgggga gacagtacgc taccgctacg atgacgcgca cagtgagtta ccggcgacga
    20761 caacggatgc gacgggcagc acccggcaga tgacggcggt tcaccgcgag gaaggtatca
    20821 gcctttaccg ccactatgac aaccgtggcc ggttaacctc ggtgaaagac gcacagggcc
    20881 gtgaaacgca gtatgagtac aacgccgcag gcgacctgac tgccgttatc accccggacg
    20941 gcaaccggag cgagacacag tacgatgcgt ggggaaaggc ggtcagcacc acgcagggcg
    21001 ggctgacgcg cagtatggag tacgatgctg ccggacgtgt catcagtctg actaacgaga
    21061 acggcagtca cagcgacttc agctacgatg cgctggaccg gctggtacag cagggcggct
    21121 ttgacgggcg gacgcaacgt tatcattatg acctgaccgg aaaactcacg cagagtgagg
    21181 atgaggggct tgtcaccctc tggcactacg atgcgtcgga ccgcatcacg caccggacgg
    21241 tgaacggcga cccggcagag cagtggcagt atgacggcca cggctggctg agagaaatca
    21301 gccacctgag cgaaggccac cgtgtcgctg tccactacgg ctacgacgat aagggccgcc
    21361 tgacgggcga acggcagacg gtggagaacc cggagacggg ggaactgctg tggcagcatg
    21421 agacgaaaca cgcctacaac gaacaggggc tggcaaaccg cgtcacgccg gacagcctgc
    21481 cgccggtgga gtggctgacc tacggcagcg gttacctggc gggcatgaag ctgggcggga
    21541 cgccgctggt cgagtatacg cgggacaggc tgcaccgtga gacggtgcgc agcttcggca
    21601 gcatggcagg cagtaatgcc gcatatgaac tgaccagcac atacaccccc gcaggccagt
    21661 tacagagcca gcacctgaac agcctggtgt atgaccgtga ctacgggtgg aatgacaacg
    21721 gcgacctggt gcgcatcagc ggtccgcgac agacgcggga atacggctac agcgccacgg
    21781 gcaggctgga gagcgtgcgc accctcgcac cggacctgga catccgcatc ccgtatgcga
    21841 ccgacccggc gggaaaccgg ctgccggacc cggagctaca cccggacagc acgctcacgg
    21901 cgtggccgga taaccgcatc gcagaggatg cgcactatgt ttaccactat gatgaatacg
    21961 gcagactgac ggagaagacg gaccgcatcc cggcgggtgt gatacggacg gacgacgagc
    22021 ggacccacca ctaccactac gacagccagc accgcctggt gttccacacg cggatacagc
    22081 atggcgagcc actggtcgag agccgctacc tctacgaccc gctgagccgc cggacgggga
    22141 aacgggtgtg gcgtcgcgag cgtgacctga cggggtggat gtcgctgtcg cgtaaaccgg
    22201 aggtgacgtg gtacggatgg gacggcgacc ggctgacgac ggtacagacc gacaccacgc
    22261 gtatccagac ggtataccag ccggggagct tcgcgccgct catccgcatc gaaacagaca
    22321 acggtgaacg ggagaaagcg cagtgccgca gcctggcgga gaagttacag caggaaggga
    22381 gcgaagacgg tcacggtgtg gtgttcccgg ctgaactggt ggggctgctg gacaggctgg
    22441 agggggaaat ccgggcaaac tgcgtgagca gtgaaagccg ccagtggctt gcgcagtgcg
    22501 ggctgacggt ggagcggctg gcggcacaga tagagccggt ttatttgcct gagcgaaaaa
    22561 tacatcttta tcactgtgac caccggggcc tgccgctggc gcttatcagt gaagacggca
    22621 atacggcgtg gagcgcggaa tatgatgaat ggggcaacca gcttaatgag gagaacccgc
    22681 atcacctgca ccagccgtac cggctgccgg ggcagcagta tgataaggag tcggggctgt
    22741 actacaaccg gaaccggtac tacgatccgt tgcaggggcg gtatatcact caggacccga
    22801 tagggctgga ggggg
//
LOCUS       DAJVUY010000059        22780 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.059, whole genome shotgun sequence.
ACCESSION   DAJVUY010000059 DAJVUY010000000
VERSION     DAJVUY010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22780
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.059"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..455)
                     /locus_tag="OQQ72_002008"
     CDS             complement(<1..455)
                     /locus_tag="OQQ72_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2011749.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLETG"
     gene            complement(485..1201)
                     /locus_tag="OQQ72_002009"
                     /pseudo
     CDS             complement(485..1201)
                     /locus_tag="OQQ72_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            1497..2273
                     /gene="exuR"
                     /locus_tag="OQQ72_002010"
     CDS             1497..2273
                     /gene="exuR"
                     /locus_tag="OQQ72_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HCS2011750.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            2618..3280
                     /locus_tag="OQQ72_002011"
     CDS             2618..3280
                     /locus_tag="OQQ72_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2011751.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            3284..3667
                     /gene="mzrA"
                     /locus_tag="OQQ72_002012"
     CDS             3284..3667
                     /gene="mzrA"
                     /locus_tag="OQQ72_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HCS2011752.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            3814..4182
                     /locus_tag="OQQ72_002013"
     CDS             3814..4182
                     /locus_tag="OQQ72_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HCS2011753.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            4220..4525
                     /locus_tag="OQQ72_002014"
     CDS             4220..4525
                     /locus_tag="OQQ72_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS2011754.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            4528..4932
                     /locus_tag="OQQ72_002015"
     CDS             4528..4932
                     /locus_tag="OQQ72_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS2011755.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            4922..5221
                     /locus_tag="OQQ72_002016"
     CDS             4922..5221
                     /locus_tag="OQQ72_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqjK-like family protein"
                     /protein_id="HCS2011756.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            5407..5799
                     /locus_tag="OQQ72_002017"
     CDS             5407..5799
                     /locus_tag="OQQ72_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS2011757.1"
                     /translation="MKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVP
                     GFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSKFAEGVNSLMFMKN
                     LTISGGFLLLAITGPGAYSIDRLLNKKW"
     gene            5869..6772
                     /locus_tag="OQQ72_002018"
                     /pseudo
     CDS             5869..6772
                     /locus_tag="OQQ72_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708909.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
     gene            7065..7430
                     /locus_tag="OQQ72_002019"
     CDS             7065..7430
                     /locus_tag="OQQ72_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS2011758.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
     gene            7672..8028
                     /locus_tag="OQQ72_002020"
     CDS             7672..8028
                     /locus_tag="OQQ72_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS2011759.1"
                     /translation="MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL
                     GLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGVWALLYLVPIIGWLVLFVFACLEG
                     NSGSNRYGNDPKFGSN"
     gene            complement(8079..8975)
                     /gene="yhaJ"
                     /locus_tag="OQQ72_002021"
     CDS             complement(8079..8975)
                     /gene="yhaJ"
                     /locus_tag="OQQ72_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YhaJ"
                     /protein_id="HCS2011760.1"
                     /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK
                     LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV
                     TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS
                     EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD
                     KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR
                     RDSMGEAKSWCLREIPKLFSGK"
     gene            9080..9781
                     /locus_tag="OQQ72_002022"
     CDS             9080..9781
                     /locus_tag="OQQ72_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS2011761.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            9804..9968
                     /locus_tag="OQQ72_002023"
     CDS             9804..9968
                     /locus_tag="OQQ72_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011762.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(10102..11412)
                     /locus_tag="OQQ72_002024"
     CDS             complement(10102..11412)
                     /locus_tag="OQQ72_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HCS2011763.1"
                     /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL
                     EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ
                     AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNS
                     VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG
                     LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA
                     GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR"
     gene            complement(11440..12772)
                     /locus_tag="OQQ72_002025"
                     /pseudo
     CDS             complement(11440..12772)
                     /locus_tag="OQQ72_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
     gene            complement(13046..14410)
                     /gene="tdcG"
                     /locus_tag="OQQ72_002026"
     CDS             complement(13046..14410)
                     /gene="tdcG"
                     /locus_tag="OQQ72_002026"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS2011764.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGALSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(14482..14871)
                     /locus_tag="OQQ72_002027"
     CDS             complement(14482..14871)
                     /locus_tag="OQQ72_002027"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HCS2011765.1"
                     /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(14885..17179)
                     /gene="tdcE"
                     /locus_tag="OQQ72_002028"
     CDS             complement(14885..17179)
                     /gene="tdcE"
                     /locus_tag="OQQ72_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HCS2011766.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFEAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(17213..18421)
                     /gene="tdcD"
                     /locus_tag="OQQ72_002029"
     CDS             complement(17213..18421)
                     /gene="tdcD"
                     /locus_tag="OQQ72_002029"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HCS2011767.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(18447..19778)
                     /gene="tdcC"
                     /locus_tag="OQQ72_002030"
     CDS             complement(18447..19778)
                     /gene="tdcC"
                     /locus_tag="OQQ72_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HCS2011768.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(19800..20789)
                     /gene="tdcB"
                     /locus_tag="OQQ72_002031"
     CDS             complement(19800..20789)
                     /gene="tdcB"
                     /locus_tag="OQQ72_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HCS2011769.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(20888..21826)
                     /gene="tdcA"
                     /locus_tag="OQQ72_002032"
     CDS             complement(20888..21826)
                     /gene="tdcA"
                     /locus_tag="OQQ72_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HCS2011770.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            22015..22359
                     /gene="tdcR"
                     /locus_tag="OQQ72_002033"
     CDS             22015..22359
                     /gene="tdcR"
                     /locus_tag="OQQ72_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HCS2011771.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         5973 a         5765 c         5308 g         5734 t
ORIGIN      
        1 cctgtctcca gaacaccttt ggtggtttga gcaaacatca ggtttttagc cagagaaccg
       61 ttagttaacg catcggaagc aaagattttg gttgcggtaa aagtggttgc cgcatcagct
      121 ttaatttctt caccgcccca ggttactgtc agcggaacaa tcttgctagc atccaggctt
      181 tgaaccagtt gcgccgggga aactaactgc atttttacat ctttggtaac gtcgttagac
      241 cagattttgg tcatcaactg gtaagattgc agaccctgcc ccggcagata ttgcatttct
      301 actgctttcg gcaacgcggt gttatcggtc tgtgtcatat ccagagcggc atcaacgttg
      361 gccgttacag taatatcctt ttgtactgcc aatgcggagc ctgcaacaga aaacatcgct
      421 gcgaccagaa gagattttgc aaataccttt ttcattacta ttccttcgtt tattacaatg
      481 ataattaatg gaccgccagt tcaaactcgc cattatcttt ggtgatccag ttattatatt
      541 tgacaacgat tttgtcgtag ccagatatgc tttcaagatt tctttcctga ccagggaaga
      601 tgtttttatt tacggtctgt atcttacaat tttctttgct attattttta caataagcga
      661 tcgttaaaat ctttaagcgt tgattccctg cattaactaa tttttgggca gcatttactt
      721 ctaacttagc aataggttgc tgaggtggaa cactaacaac aatcccccaa attaagctaa
      781 cagttaactg catagagaaa tcttttttat ctgtggcaac gtcatcaata ctgggaaccg
      841 cttcaaattt aacgcgttaa tttttttctt tttgctctgg ttccattgca acaaagcgca
      901 cagttttgct actaccggct ggtaaagcga atttaggtgg cataacaacc agatgatttg
      961 catcaccgga tttaatctca acttcatttt cctgaggcgt cgatggatta tcgatacgga
     1021 atactgtcgc cttgatgtac tgaacttcat tacttttaga tattacgcga acgttgcctt
     1081 catcctgact attaatggaa acagccatag gataaacagt catatttgac tgtgccaaaa
     1141 aaggagcgaa cacgaataaa agcggcgcaa gccgtgataa gagattaatt ttcgccacca
     1201 tataaatttg atcttacaat attgtttcca aaaagttggt gtattagaga tgtagattta
     1261 ttgtaagtca atataaaaaa gcatttttag ttaatattaa atttaaaggc tgggaattaa
     1321 cttgctgaaa tttagtagct ttcacaatga cgatacttat tttttaggaa tttataaata
     1381 ttcacaatat taattcaata cattaattca atcaccaaat ttatatatga ccaatggcat
     1441 acccatgaat aaagtggtat gataacttcg tccgcattcc actccgggag acgcatatgg
     1501 aaatcactga accacgccgt ttgtatcaac aacttgccgc tgacctgaaa gagcgcattg
     1561 aacagggcgt ctatctggtg ggtgataaac tgcctgccga acgctttatt gccgatgaaa
     1621 agaacgtcag ccgaacggta gttcgtgaag ccatcatcat gctggaagtt gaaggctatg
     1681 tggaggtgcg taaaggttca ggtattcatg tggtttccaa ccagccgcgc catcagcagg
     1741 cggctgacaa taatatggaa ttcgccaatt acggtccgtt tgagttgctt caggctcgcc
     1801 agctcatcga aagtaatatt gccgagttcg cggcaactca ggtaacgaaa caagacatca
     1861 tgaaactgat ggccattcag gaacaggcgc gcggcgaaca atgcttccgt gattccgagt
     1921 gggatttaca gttccacatt caggtagccc tggcgacgca gaactccgcc ctggcggcca
     1981 tcgttgaaaa aatgtggacc cagcgtagcc ataacccgta ctggaaaaaa ctacacgaac
     2041 acattgattc ccgtaccgtt gataactggt gtgatgacca cgatcaaatt ctcaaggcgt
     2101 taattcgcaa agatccccat gctgctaagc tggcaatgtg gcagcatctg gaaaacacca
     2161 aaatcatgtt atttaacgaa accagcgacg atttcgagtt caatgccgac cgctatctat
     2221 tcgccgaaaa cccggtagtg catctcgata cggccaccag tggcagtaaa tgaaactcct
     2281 gtccgacagg cgctgcgacg cgcctgttcg cttcgtcggt aagcgaaaag tataaagtgt
     2341 cagcctgtgt aaatcctctc gccaccctcc cctgcattca gcaaaatcag actccacgga
     2401 catgtaattt tgataacgaa caacgttgac ctttgttaca attagattca atttgaattt
     2461 atgtttttga atgctttctt atctcacgat ttaacaggga atagttcagg ctgtgttgat
     2521 gtatcaaacc cgcagaacat accaaaacag caataacatt gcggtagtgc atcttttaaa
     2581 accagcgtgg cgttaaccga ttcaccagga ataatgaatg gaacttttga cccaattgct
     2641 gcaagccctg tgggcgcagg attttgaaac cctggccaat ccatcgatga ttggcatgtt
     2701 gtattttgtc ttgtttgtaa ttttgttcct tgaaaacggc ttgcttccag cggccttttt
     2761 accgggcgac agtttactgg tattggtcgg cgtgttgatt gcgaaaggcg cgatgggtta
     2821 cccgcaaacg attctgctgc tgaccgttgc cgccagcctc ggctgctggg tcagctatat
     2881 tcaggggcga tggctgggca atacccgcac cgtacaaaac tggctatctc atttacccgc
     2941 gcattatcat caacgcgcac accatctttt tcataaacac ggtttatcgg cgctgttaat
     3001 tggtcgcttt attgcgtttg tcagaacact gctgccgacg attgccgggt tatcagggct
     3061 gaataacgcg cgctttcagt ttttcaactg gatgagcggt ctgctgtggg tattgatcct
     3121 gacaactctg ggttacatgc tcggcaaaac gccggtattt ttaaagtacg aggaccagct
     3181 gatgtcatgc ctgatgctgc tcccggtggt gctgctggtg tttggcctgg caggttctct
     3241 ggtcgtgtta tggaaaaaga aatatggaaa tcgggggtaa gggatgcaaa tacctcgcat
     3301 gtcgcttcgc cagctagcct ggtccggcac tgttttactt ctggtcggca cgctgttgct
     3361 ggcctggtcc gcggttcgcc agcaagagtc tacgctggcg attcgtgccg ttcatcaagg
     3421 cacaacgatg ccagacggtt tttcgatctg gcatcacctt gacgctcatg gcattccttt
     3481 caaaagtatc acccccaaaa acgacactct gttaattaca tttgactcca gcgaccagag
     3541 cgccgccgca aaagcggtcc tcgacagaac attgccccat ggctacatca ttgcgcagca
     3601 ggacaataac agtcaggcta tgcagtggct gacccggtta cgggataact ctcatcgctt
     3661 cggataactt cctgttatcc gaaacatatc actcactttg gtgatttcac cgtaactgtc
     3721 tatgattaat gaggcggtgg ttaacactac cgcttcgttg tctggacaat cgttcctttg
     3781 taacaggtcc gaatcacaat ggaaggttca agaatgaaat accgcatcgc tttagctgtt
     3841 tctctctttg ctcttagtgc cggtagttat gccactaccc tgtgtcagga aaaggagcaa
     3901 aatatcctta aggagatcag ctatgccgaa aaacaccaaa accagaatcg tattgacggt
     3961 ctgaataaag ccctgagtga agtccgggcc aactgttcag atagccagct gcgtgccgat
     4021 catcacaaga aaatcgcaaa gcagaaagat gaggtggcgg aacgccagca agatttagcc
     4081 gaggcgaagc aaaaaggcga tgccgataag attgccaaac gcgaacggaa actggcagaa
     4141 gcgcaggaag agctgaaaaa gctggaagcg cgcgactact aactcacaat agtcactact
     4201 tactcacctg gagaaaacta tgtcaaaaga acacactacg gaacatctgc gtgctgagtt
     4261 gaaatccctt tccgatacgc tggaagaggt gcttagctca tctggcgaga agtcgaaaga
     4321 agagttgagt aagattcgta gcaaagcgga gcaggcactg aaacagagcc gttatcgcct
     4381 gggtgaaacc ggtgatgcca tcgccaaaca aacccgtgtc gcggcggcgc gtgctgatga
     4441 gtatgtgcgt gaaaatccgt ggaccggcgt gggaattggc gctgcaatcg gtgtagtgct
     4501 cggcgttctg ctgtcgcgtc gttaattatg gcggacactc atcacgcgca agggcccggt
     4561 aaaagcgttc tgggcatcgg gcagcgaatt gtttccatca tggttgaaat ggtggaaaca
     4621 cgtctgcggc tggcggtggt ggagctggaa gaggaaaaag ctaatctctt tcaactttta
     4681 ctgatgctgg gcctgacgat gcttttcgct gcatttggtc ttatgagcct gatggtgcta
     4741 attatttggg cggttgatcc gcaatatcgc ctgaatgcga tgattgccac caccgtggtg
     4801 ttgctgctac tggcactgat tggcggtatc tggacgttac gtaaatcgcg taaatccacc
     4861 ttgctgcgcc atacacgcca tgagctggca aacgatcggc aactgctcga ggaggagtcc
     4921 cgtgagcagt aaagtcgaac gtgaacgacg taaggcgcaa ctgcttagcc agatccagca
     4981 acaacggctg gatctttccg ccagtcgtcg tgaatggctg gaggcaacag gcgcttacga
     5041 tcgtcgctgg aatatgctgc taagtctgcg ctcctgggcg ctggttggca gtagcgtgat
     5101 ggcgatctgg acgattcgcc atcctaatat gctggtccgc tgggccagac gcggttttgg
     5161 cgtatggagc gcctggcgtc tggttaaaac gaccctcaag cagcaacagc ttcgcggtta
     5221 acttccctct ggccggagcc attccggccc tatccctcaa attttttgaa gatttttgac
     5281 agttttcctt gctaacaatc atcattcacc acgtttatga ttctctccat cgacagcaac
     5341 gacgctaata ccgcgccctt gcacaaaaaa acaatcagca gcctgagtgg cgcagtggag
     5401 agtatgatga aaaaattaga agatgttggt gtactggtag cgcgcatttt aatgccgatt
     5461 ctgtttatta ccgcaggctg gggaaaaatc accgcttact ctggtaccca acaatatatg
     5521 gaagcaatgg gtgtcccggg ttttatgctg ccgctggtga ttctgctcga gttcggtggt
     5581 ggtctggcaa tcctgttcgg tttcctgact cgcaccacag ccctgtttac tgcgggcttt
     5641 acgctgctga cggcattttt atttcacagc aagtttgctg aaggcgtcaa ctcgctgatg
     5701 ttcatgaaaa acctgacaat ttctggcgga ttcctgctgc tggcaattac cggtccgggc
     5761 gcgtatagca tcgaccgcct gctgaataaa aagtggtaag cacgcgctat acttaacgat
     5821 aaaaaacgag gaggaagctc ctcgtttttg ctattggagg agagaaaaat ggggcaactg
     5881 attgacggcg tctggcatga cacctggccc cactggcaca ggcggtttta tcgcagagaa
     5941 agatcgttat catctctatg tttcactcgc ctgcccgtgg gcgcaccgca cgctgatcat
     6001 gcgcaaactc aaaggactgg aaccgtttat ttccgtttcc gtagtgaacc cgctgatgct
     6061 ggaaaacggc tggacctttg atgacagttt tccgggagca accggagata cgctctatca
     6121 acatgaattt ctgtatcagc tttatctcca cgccgatcca cactacagcg gacgagttac
     6181 tgttcccgtg ctgtgggaca aaaagaacca caccattgtc agcaacgaat cagcagaaat
     6241 catccgcatg ttcaataccg cgtttgatgc gctgggcgca aaagcgggtg attactaccc
     6301 accagccctg caaacgaaaa ttgacgaact taacggctgg atttatgaca ccgttaacaa
     6361 cggcgtgtat aaagctggtt ttgccaccag ccagcaagcc tacgacgagg cggtggcgaa
     6421 agtgtttgaa tcgctggcgc gactggagca gattttaggc cagcatcgtt acctgaccgg
     6481 caaccagcta accgaagccg atattcgcct gtggactacg ctggtgcgtt ttgatccagt
     6541 gtatgtgacc cacttcaagt gtgataagca ccgcatcagc gattacctga atctgtatgg
     6601 cttcctgcgc gatatctacc agatgccggg gatcgccgaa actgtcaatt tcgatcacat
     6661 ccgtaatcat tacttccgca gccataagac catcaaccct acggggatta tttcaattgg
     6721 tccgtggcag gatctcgatg aaccgcatgg acgagatgtt cgcttcggtt aaaaaaaggc
     6781 accttacgag gtgcctctga taattagcta agtgcatgtt gttcatgtcg gatgcggcgt
     6841 gaacgcctta tcaaacctac aaaacgttta tattcaatat gttaaaatga ccgcgtaggc
     6901 cagataagcg tagcgcatct ggcgattttg cgcttgtcat cagtcttagc gcaccttcac
     6961 ggcactttat taattccttg aacgaatatt tactgccatt tcattcacgt ctattcttaa
     7021 tttgctgctt taaaaacaag tgattgagca aaattgaggc aaaaatggac tggtatctga
     7081 aagtactaaa aaattatgtc ggtttccggg gtcgtgcgcg gcgcaaagag tactggatgt
     7141 ttattctggt caacatcatc tttacgttcg tgctggggct gctggataaa atgttaggct
     7201 ggcaacgcgc cggtggcgaa ggcatcctga cgacaatcta cggtattctg gtgtttttac
     7261 cgtggtgggc ggttcagttc cgccgcctgc acgacaccga ccgctcggcg tggtgggcac
     7321 tgttgttctt aatcccgttt atcggctggc ttattatcat cgtctttaac tgccaggcgg
     7381 gtacgccagg cgaaaaccgc tttggaccag atccgaaact ggaaccttaa aacaaatctg
     7441 ctcgccggat gtctgactca tccggctttt atcatcatgt tgatgaatga ataatttact
     7501 aatgtttatt taaaatattt caatgtcgtt atataaatta cctataaaaa acaaccatgt
     7561 atttatctta aatatcaaaa cctttataac atccgaaaaa gaaagatacg aatagcattt
     7621 acacaatacc cggaatagac tttcgtcact tttaattaaa gggatgtttt tatgcagtgg
     7681 tatttagccg tattaaaaaa ttatgttggt ttctctggtc gcgcacgtcg taaagagtac
     7741 tggatgttta ctctgattaa cgccatcgtc ggcgctatta tcaatgtcat tcaattgatt
     7801 ttaggtttag agtttccatt cctttctctc atttacctgg cagcaacaat cattccggtc
     7861 attgctctgt gtgttcgtcg tctgcacgat actgaccgtt caggtgtgtg ggcgcttctc
     7921 tatctggtac cgatcattgg ctggttagtt ctgtttgtat ttgcctgttt agaaggcaat
     7981 tctggcagca atcgttacgg aaacgatcct aagtttggtt caaattaatc ttagaattgg
     8041 ggcgatattt cgcccctttt tattaacaat aataaatatt attttccgct aaaaagtttg
     8101 ggaatttccc gcagacacca ggatttcgct tcccccatac tgtcacgacg ccaggccata
     8161 ataatatcga tctcgctggt cgattccggg ctgacgacac gcaaccgccc ttccgcaata
     8221 tctttttcga ccatcggata cggcatcgtc gccacgccaa gccccgccag taatgcctga
     8281 cgtttatctt caatcgtgct caccgttaag cgcggctgtt tgtccagcag ctgtacggtc
     8341 aacaccgggc gctcacgagc ggtatccgct accgcaattc cacgatattt cacgcgcgtc
     8401 acttcagata acggttccgg ctcctgatga atcgggtgat caggcgcggc aacgtagacg
     8461 ttcattaagg tatagagctt gcgcgagttg atctccgacg aggaacgaaa atgcatatcc
     8521 ggcgcgataa cgatatccgc ccgcccctgc tccagtcgtt cccacgcccc cgccagcact
     8581 tcggtgatga ttgccagttg ggtattggct tttgccgcca gtttgtcgat taacgggaaa
     8641 aaggcaggtg tcggtaccag cgcctcggtc acaatggtga gatgcgtttc ccaaccgcgc
     8701 gcgagggctt ccgcatcggt agtcagttta tctgctgctt ccagcaaaac gcgccctcgc
     8761 tccagcaaca tcctcccgac attggtgaat ttggtgcgat ggcccgagcg gtcaaacagc
     8821 accacatcca gctcttcttc cagtttttgc atggtgtagc taagtgcgga aggcacgcgt
     8881 cccagctcat ccgccgccgc cgcaaaactg ccccggcgat cgatcgcatc cataacccgt
     8941 agtgcttcca gcgttaatgc cctttctttg gccatttcgt tctcattcag gaaatttgaa
     9001 cataccgggc agaatatctg gctaacaatg tagcgtccag ccccttacca taaaaggaag
     9061 taaagagagg tcaagaatta tgattactac ccgaactgcc aggcagtgtg gacaagcaga
     9121 ctacggatgg ttgcaggccc ggtatacttt ttcctttgga cactacttcg acccgaaatt
     9181 gttaggctat gcctccctgc gtgtgcttaa ccaggaagtg ctggccccag gtgccgcctt
     9241 tcagccgcga acctatccca aagtcgatat tttaaatgtg attctggatg gagaagcaga
     9301 gtatcgcgac agcgaaggca atcatgttca ggccagcgcc ggtgaggcgt tgctgctctc
     9361 tacccagccg ggtgtcagct acagcgaaca caatctcagc aaagacaaac cgttaacacg
     9421 aatgcagctt tggctggacg cctgcccgca gcgagagaat ccgctgattc aaaaactggc
     9481 gcttaatatg ggcaagcagc aattaatcgc ctcgccagag ggtacgatgg gaagcctgca
     9541 attacgccag caagtgtggc tgcaccatat cgtgctcgac aaaggcgaaa gtgcgaattt
     9601 ccagttgcat gggccacgcg cgtatttgca atcgattcac gggaaatttc atgcgcttac
     9661 gcatcatgaa gagaaagcgg cgctgacctg cggtgatggg gcgtttattc gtgacgaggc
     9721 taacattacg ctggttgccg attccccact gcgcgctttg ctgatagatt tgcctgtcta
     9781 gttgttttta cagggagatg atgatgagta aaaaatcggc caaaaagcgc cagccagtga
     9841 agcccgtggt ggcgaaagaa cctgctcgca ccgccaaaaa ttttggctat gaagagatgt
     9901 tgagcgagct ggaagccatc gtcgcggatg ctgaaacgcg tttagccgag gatgaagcta
     9961 ccgcgtaaag acaggttgcc ggatgcggcg aaaacgcctt atccggccta caaaatccaa
    10021 caacattaac gaattaaaca acccgtaggc cggataaggt gcgccagcat cgcatccggc
    10081 acaatactca aaacctggcg tttatctggc cttgctcgcc ataatctcga taatctgccg
    10141 atccgtttgc tgcatcgaat ggcttgctaa cgcacacagg ttggcaatcg actgctcaac
    10201 atcatgcgcc acgatccctt cattgccggt cacggcggta tcatccagcg ccattaacac
    10261 cgctttccac gcagccgaag cactggtcga aaccttcatc gcgcagctgt tcgacgcacc
    10321 atcgcaaatc atgccgctga catcgccgat catactgctg atcgccatcg agatagtttc
    10381 ataacgccca tccaccagcc atgccatccc agcggcggcc cccattgctg cggtcgttgc
    10441 ggcacaaagt gcagacaaac gcggtaactg gttatggatg taaattgcgc tcaaatgaga
    10501 aagcatcagc gcacgcgcca gtcgttcatc atccgctccg aagtgttctg ctacaaccac
    10561 cacaggcatt gttgcggtga tcccctggtt acccgagccg gagttactca tagccggaag
    10621 cgtagcgccg cccatacgcg catcggatgc cgcgctggta cgaatcacaa tggatgaaga
    10681 gagatctttc gccagcaaac cgcgctcgca ctgtttttcc agcgtcgcgc caatatgcag
    10741 cccccactta ccgctcaaac cttcctgcga taacgcacaa tttagcttcg cggaatcgag
    10801 aataaagcgg atcgccgcaa acgggacttc attgacgaac ttcaggatct cagccagcgt
    10861 cgttctggaa agcaccgtca gcggagactc ttgctcgccc tctgccacac acgcctgctg
    10921 ggtaaacacc acactattgt gcgtctcaat atgcacaatg ttggtatgcc cgccgacgat
    10981 ggtgacacac gcccacttct caccgttcca gactttggcg cgtgagaaga ggatttcatt
    11041 gcaaggttcc tggatcttaa cggagacttt ccccgccgcc agcagtgctt tggcatcggc
    11101 aattgcctgc gcagttgcgt ctttcagcac ttccagcccg gcgttggcat ttccacctaa
    11161 cgcccccagc gccgccgcaa tcggcagccc caccattccc gtgccgggaa cggtgacgcc
    11221 cagaccgttc ttcatcagat ttggcgaaac ccaggcttct acacgttcaa ccggaccttc
    11281 cagttctgcc gcagcaaccg ccgccgccag cgccagtgaa atcggttcag tacatcccag
    11341 cgccggtttt acttcctcct gaacggcgag gatgtaacgc tgccataacg gatttaaagt
    11401 cgaatcaaac atattaaaaa ccttaaaatt tcaggtaaat caagaaaatg ccaggaacgg
    11461 agaaacacaa agcaacaaac cagtgacgat aatcaggtac agagacatcc ctttgtattt
    11521 gtgcaatgcc ggtactttgt aaaccagcca cgccgggatc aggcacccta ccatgccgaa
    11581 aatcgggcta cagatagagg tgaagctcaa caccggtgcg ttcagtacga tggcgctcca
    11641 ggccagcaaa atggcgaaaa tcatgatgcc gcgctgaaca agattttcgt taatcttctc
    11701 ggcaggcatc ttgcgacgca ggatgttcat tacgatccct tgcgttgctt cgcgaaagcc
    11761 taaatagacg ccaaagaatg cagtcatgac agcaaagata ttgagaatga cgctgaccac
    11821 tttcacccac gctgcgccgt caccgctaat aaactgtgcg gcaatcgcca gcgcggaaat
    11881 attctgctcg taggctttta ccgcttcgtc atgtcccatc gccagcgtga acgacacggc
    11941 gtagaaaaag acggtgacaa ataaaatgcc aaacgcgata ttcattgccc gcaatgcttt
    12001 atgccgcgcc acttcaattg atttttcccg cgagcgataa gagatcacca tcgggcttaa
    12061 cgtctggata aacagaatcg acgtcagggt aaacggcagc gtaataatgg cgtttttcac
    12121 cagcagcccc agcggcggta gcgaaccgac gttatacaga tgccacattc ccaccatcga
    12181 cacgcccagc gcagcgacta ccagcagctt ggtcagcacc atgccggtcg aaattttgaa
    12241 taacaatttc tcgccgcgtg aagagatcgc caccagaatg caaatcagta ccagaccata
    12301 aaagggactg tctgacagca ccccttccgt cacgccgaag gtatgcagat aggaagcact
    12361 atcgttggtg atggcggtgg aatagacgaa catccaaatc accagcatta cgaaatagag
    12421 cgcacctaac aggatgcccc agtttttacc taaataaccg ctaatgacac tcgggtaatc
    12481 tttacattct gtgtgattct gccagcgtat taataaacaa ccgctgaaac agatacattg
    12541 ccgggtaacc aatcaccgat gagagcaaaa atacccacaa tcccatcaaa ccgacctgca
    12601 ccgggagaaa aacaatcccc gcgccaatcg ccatcccgat actcataatc acccagccgg
    12661 tgtcagtact gtcgaatttg atcgcttctc gccactcgct ctcactcatt ccagcacgac
    12721 ccgccggggt cgaagcgtct gcaatgacgc ctttattcga tgcaatttcc ataatttctc
    12781 gctcaatatt ttgtagggct tattattttt ttccgagccg catcaaggcg atatgcggtc
    12841 tacgtttttg caggcgagtt attagaataa agaaatgata cgcgcgaggt cagagaaaat
    12901 cttcacaatc aagactttga aataacggag atggataaga attttctact aaattaatcg
    12961 caagagaata ttcattctct atttgcggca gatcacaaaa aaaggtgcac atttgtgcac
    13021 ccaaggatga aagctgacag caatgtcagc cgcagaccac tttaatggcc agtcctccgc
    13081 gtgatgtttc gcggtattta tcgttcatat ctttgccggt ttcatacatc gtctcgatca
    13141 ctttatcgag tgaaacacgc ggtgccgagg tgcggcgcat cgccatccgc gcggcgttta
    13201 ctgctttcac ggcattaatg gcattacgtt caatgcacgg gatttgtacc tgtccggcaa
    13261 ccggatcgca ggtcagccca aggttatgct ccatcgcgat ttccgccgca ttgcatacct
    13321 gcgccggact gccgcccagt agttcagtta accctgccgc cgccattgaa caggccacgc
    13381 caatctcccc ctgacagccg acctccgcgc cagagatgga ggcgttcatt ttatacagcg
    13441 cgccaatagc ccccgctgcc agaaaatagc gggcaattga ccgctcgttt accggacgac
    13501 ggaacttatc gtaataagcc agcactgccg gaataatgcc gcacgcaccg ttagtcggtg
    13561 ccgttaccac gcgcccgcca gctgcgtttt cttcactaac cgccagcgcg tacatgttga
    13621 tccagtcgat gacattcatc ggatcgttag agatgttatc gctagaaacc agctgacgac
    13681 gcagcgctac ggcacgacgc ggcacattga gcggaccagg cagcacgcct tcagtgttca
    13741 tcccgcgttc aataccgtca tgcatcactt gccagatacg ggcaaaccct gcgtcaattt
    13801 ccgctttgct gcgcagcgcc agctcgttgt gcatcatcag gccagatata gacaggccgt
    13861 tgtaatcaca cattttcagc agttcacctg ctgagtggaa atcgtaaggt acggacgttt
    13921 cgacatcgtg cgacaggccg aagtgttctt cttcgacaat aaacccgccg ccgacagagt
    13981 aataggtttt acttaatagc gcttcctgtc ccttccaggc agtgatccgc attccgttct
    14041 catggcgagg caacatttcg ggatggaaga taatgttctt tgctacagga aaatcaacaa
    14101 tatgcgcacc agatgccact ggcagccgcc cgctgcgcgt tactaactct ataaatgcag
    14161 ggatctcatc aatgacaaca tcctgcggac tgtttcctgc cagtcccatg ataatggcga
    14221 catccgtggc atggcctttg cccgtcagtg acaacgcccc atacagatcg accacaatat
    14281 ggctcgtcgc ggttaataag ccgctacttt ccagccgatc aataaaactt tttccggcat
    14341 tcattggccc cacggtatgc gaactggagg gaccaatccc aattttgaaa atatcgaatg
    14401 cactaatcat atccacaccc tcggattgcc gttcagtgaa gtggagcgga acgaccttgc
    14461 gaccgtcccg ctcacgaggc tttacgcact acgtactgcg atagcttcaa tttccagctt
    14521 cacatctttc ggcaaacgcg caacctgcac acagctccgg gtcgggtagg tcgcctgatg
    14581 ctcatcgaag aactgcttat agacttcatt gatggtggca aaatcattca gatcggtgat
    14641 gaacacggtc atcttgatga tatcgcccac gctcagcccg gcagcaacca cgatcgcttt
    14701 gacgttttcg aggcttaaac gcgcctgatc ttgcacatca gccgggatct caccggtctg
    14761 cgggcaaacc ggaatttgcc cggaggtgaa gaccatgctg cctaaatcaa cgccctgaac
    14821 ataagggccg attgcgcctg gggcacgttg cgtttcgata atctttttca tacatcctcc
    14881 ggcgtcagag cgcctgggta aaagtacgtg aaataacatc ctgttgctgt tcacgggtca
    14941 gtgcgttgaa gcgcacggcg tagccagaga cacggattgt caggttagga tatttttccg
    15001 ggtgctcgat ggcatccagc agcatttccc gattcattat gttgacgttg aggtgttgac
    15061 cgccttcgac atccgcttcg tggtggaaat acccatccag caggccgaca aggttggttt
    15121 tacgtactgg atcttctttg cccagcgccg caggaacgat tgagaaggtg tacgagatcc
    15181 catctttggc gtaggtgaac ggcagtttcg ccaccgacgt caatgaggcc acggcacctt
    15241 tgcggtcacg accatgcatc gggttagcgc ccggcgcgaa cggtgttccg gcgcgacgac
    15301 cgtccggcgt attaccggtt ttctggccgt acaccacgtt agaagtgata gtcagaatcg
    15361 actgggtagg gacggcgttg cgataggttg gcagcgcttt aattttcttc ataaagcgtt
    15421 caaccaggtc gcaggcaatg ctgtctacgc gctcgtcgtt gttgccgtac tgcggatatt
    15481 caccgtcgat ttcaaagtcc accgccaggc cgttttcgtc acggattggt ttcacgcggg
    15541 catatttgat ggcagacagg gagtccgtcg ccaccgacag gcccgcgatg ccgcatgcca
    15601 tagtgcgata gacatcacga tcgtgcagcg ccatcagcga agcttcgtag ctgtacttgt
    15661 cgtgcatgta gtgaatgata ttcagcgcgc tgatgtactg caccgccagc cagtccatga
    15721 agtgatcgag gctgtccatc actttgtcgt aatccagcac gtcgtccatc agcggtgctg
    15781 ttttcggccc gacctgaatc ttcagcttct cgtccacccc gccgttaatt gcgtagagca
    15841 gcgttttcgc caggttagcg cgtgcaccaa agaactgcat ttgcttacca atcaccattg
    15901 ggctgacgca gcaggcaatc gcgtaatcgt cgctgttgaa gtcagtacgc atcagatcgt
    15961 cattttcata ctgcaaggaa gaggtgacga tcgacacctg cgcggcatat tttttgaagg
    16021 caatcggtaa ttcttccgac caaagaatgg tcaggttagg ttccggtgcc ggccccatag
    16081 tgtgcagggt gtgcaaatag cggaaggagt ttttggtcac cagcgtacga ccgtccagcc
    16141 ccatcccgcc gatcacttcc gtcgcccaga ttgggtcgcc ggagaacagc gaatcaaatt
    16201 ccggtgtacg caggaagcgt accatacgga tcttcatgat gaagtgatcg atcagttcct
    16261 gtgcctgctg ctcattgagt acgccagctt caaagtcgcg ctcaatgtag atatcgagga
    16321 acgatgccgt gcggcccagc gacatcgcgc cgccattttg cgatttcact gccgccagat
    16381 aagcgaagta gagccactgc accgcttctt gcgcattctg cgccgggcga gagatatcaa
    16441 agccatattt cgccgccatt tcctgaatct gcaacagcgc atgacgatgc tctgccagct
    16501 cctcacgcag acggatggtg gcttccagat cctcgccttt ttccagacga gactggagat
    16561 cggcaaattg cagttcgcgt tcacgtacca gataactgat gccatacagc gctacgcggc
    16621 gatagtcacc gataatgcgc ccacggccat agccatctgg taaaccggtc agcacgccag
    16681 atttacggca gcgcagcata tccggtgagt aaacatcaaa tacgccctgg ttatgggttt
    16741 tacgcagatc ggtaaacaga tattcaaatt cactgtccat ttcacggcca taggcgtgga
    16801 atgaactttt aatcatatta atgccaccga acgggtgtag cgcacgtttc aacggcgcat
    16861 ccgtttgcag gccaacaatt ttttccagcg gctggttaat atatcccgca tcatgagcgg
    16921 taattgtggt ggcaatattg gtatcgaaat caaccggcgc gtgggttgcg ttttcgatac
    16981 ggataccttc cattactttt tcccacaatt ccgtggtggc aggcgtcgct tcggcgagga
    17041 aagattcatc gccttcatac ggtgtatagt tatgttgaat aaaatcgcgg acattaattt
    17101 cgtttttcca gtccgtacct ttaaagccaa gccatgcgtc ggcgtacagc ttatcgctgg
    17161 tatcaatatc taccttcatg aaaaataatc tctctacaat acttcaacta aattatgcaa
    17221 attctgcggg cgcgttaact ttgcctaaat gaatggcatc caaagcaatc attttttctt
    17281 cgttagtcgg aataacagcg caaatgacac gcgcattttc actggaaaca attcgctcac
    17341 cacaggagtt agagcgatta ttcatttctg tatcaatctc tacgcctaat acagccaaat
    17401 gttccatgac cagacgacga attaagcttg aattctctcc tattccgccg gtgaatataa
    17461 ttccatccag gcgacgtaat gaagctgcgt gtccggcaat atgacgggca attcggtgaa
    17521 caaaggtttt aattgccagt tgcgcgcgtt cgtgaccttc atgccaggct ttttccagaa
    17581 cacgtaaatc cgaagaaaga ccggaaatac ctaataatcc cgactcttta ttcactacgc
    17641 gttccaggtc acccaagctc tggttggttt ggctggcgac ccaggacatc gcaccaaaat
    17701 cgacatcgcc actgcgggta cccatcatca agccttccag cggcgtcatt cccattgagg
    17761 tgtcaacact ctgaccgttg cgaactgcgc agattgacgc gccattgcca agatgcgcca
    17821 caaccaggcc ggagtcatct tccgctagat tcagcaaaga atgtgcgcgc tgggaaacat
    17881 agcggtgcga cgtgccgtgg aaaccataac ggcgtacacc taactcttca taatatttcc
    17941 acggcaggcc gtataaataa gcttccggag ccatcgtctg gtggaaactg gtatcaaata
    18001 ccgccacctg agttacgccc ggaaataatt gctgcgccga ttcaatacca cttaaattgg
    18061 cgtaattatg caggggtgcc agtggagaaa cgcgacggat attatcaatg acctcatcgg
    18121 taataatggc ggactcggta aaaatactgc cgccgtgagc gatgcggtgg ccaattaagg
    18181 ccacactgtc atttaaattc cgtttttcca gttcaaatgc aattgccttc aatgcacctt
    18241 cgtagctgtg gtgagccagc ggtgctggct ctcccccatt tacggataag aatgcatttt
    18301 ctgagttaat accgtcggca atacctgaca ttaatacttc acagtcgctg gcatcgagta
    18361 cggaaaactt aatcgaagac gaaccacagt taataaccaa aacaaccgga aattcattca
    18421 tctcttttct catcctgagt tacggattaa aacagtttgt atacgatgtt caggatggtc
    18481 agcagaccaa tcacggtaac aaacacgtta tccagacgac cacggtattt cgccagagac
    18541 ggtgctttac ggatggcata catcggcaac aggcacagca gggatgcgat aatcggtgcg
    18601 cccatggctt caataaggtc gaggatgttc gggttggcgt aggcaacaac ccaggtggag
    18661 cccatgatga agatcatgct gatagtgttc agtttaccca gcgacacttt agttttgtcg
    18721 cctttataac cgaacttcag aatcagacca ttcaagcctt ccagcgtccc cagatagtga
    18781 ccgaagaaag atttgaagat agccacgagt gcgatgatgg aagccgcata ttccagtgta
    18841 atcgcgaacg ttgttttggt accggtcatg gacgcaaagt ggttagccag ataagaaagc
    18901 actggaatat tctgcgcttt ggcttccgcc atgttggccg gagacagcgt aaacaggcag
    18961 ctaaaggcaa agaacatcac cactgcaacc atcagcatgc tggcacgaga aatgatttgg
    19021 gaacatttac gttcggtgaa gtcgcgaccg aagtctttct catactcttc acgtttagaa
    19081 accacgaagg aagagacgat tggcgagaag ttaaaggaga aaaccatgat ggaaatcccc
    19141 agccagacag tgatcaggat accgtcatga ccggttaacg acagcgaacc gaggtcaacc
    19201 tggtcgataa ctgcagagtt ccagtaaggg atcagcgaca gagaaatcag caccaggctg
    19261 gcgataaacg gccataccag gtagctcatc actttaacca tcagatcctt accaaaccag
    19321 atgacgaaag ccatcagcag caacaggaac agcgccacaa agccgcgatt cagcggtgca
    19381 aatccgagct ggttttccca gaacgtcata aaggtattgg taatagtaac gccataaatc
    19441 cacagcagtg ggcaaatcgc gaagaagtac aggaacgtga taaccacgcc gccagtttta
    19501 ccaaaatgct cttccaccgt ttccgtaatg ttgccggaag ggttagagcc agaaagacac
    19561 agacgcgcca gcgcccggtg gcaataaaat gcgatggggt atgccaatac caacatcaga
    19621 agaatcggga tcagtccgcc aaaacctgcg cggataggga agaacagcac cccggcgccg
    19681 attgccgtac caaacaagcc taacgtccat gtggtatctg atttacgcca ggacgattgt
    19741 tttgtctggc tggatacaat gctatctgaa gtactcatat cctatcctca acgaattaat
    19801 taagcgtcaa cgaaaccggt gatttgagag acgcgagaaa gatcgatatt gccgccggaa
    19861 ataatactga cggtttttct gttttgaata tattggtcta atttaccgct taataatgca
    19921 gcacatgcca gagcacctgc gccttcggtg acgactttat tgcgctgaat taaggcaatc
    19981 atactgtttc tgatttcgtc ttcgctgacc agcacgatgt catcgactaa ttcacgaacg
    20041 atttcgtaag ttaaattacc cgggcgggag acatcacaac catccgccag ggtgccggta
    20101 gttcggtgcg tggttatttc tccggagtgg aaagaagccg ccatgccgtg aacgttttct
    20161 gactgtacgc caataacacg aatggtcggg ttaatagatt taattgccac cgcaatacca
    20221 gcaattaaac caccaccacc aattggcaca atcacgttat cgacatcata gagatcttcc
    20281 ataatttcca gaccaatcgt tccctggcca gcaatcactt tcggatcatc gtaaggtggg
    20341 ataaaaatac gaccttccat ttcgacaatt tcgctcactt tagcgatagt gtcgttgaag
    20401 ttatcaccat gcagaacgac ttctgcggag tagtcgcacg ttgccgctac tttggatttt
    20461 ggcgcacctt ttggcatcac cactttaccg tcgataccca gcatcgcgca ggagagcgaa
    20521 accccttgcg catggttgcc cgcagaacag gccaccacgc ctttgcgttt ttccgcatcg
    20581 gtcagtgaac ttaatttatt aaatgcgcca cgaattttaa atgaacccgt acgctgcata
    20641 ttttcaaact tcaggaatat ttcacctttg caacgttcac taaaatagtt ggagcgaggc
    20701 atgcctgttt tataaattcg cccagccagt cgttgtttcg cttcaataat atcatcaata
    20761 gcaaccggca gatcgtatgt aatatgcatt ataaaacctc ttcgcctgaa ttaaatatgt
    20821 agataaccgt aaccgacacc tgcaaaacag acaggtggat tatttatgtt taaataaaaa
    20881 caaataacta accaacttct attaatagcc ttcgtctaca cccattataa gatgaatact
    20941 ctttggctaa ttccaccaaa accgatgctg cttttttaat acgataattt ttcgaccata
    21001 ccgcggcata ttgtgccaca ggtaatgttt cttcaactgg aatagtaata aattgatttg
    21061 aaccaaaagg tgacgtcata tcacaaggaa ttacagttaa gaaatcagca ttgagaacaa
    21121 gattataaat tgtcacgact gagtcggttt taacgatgtt ttcaatactg atgccatttc
    21181 tttgtaacgt agtaagaagc tcgctgtagt accccatatt ggtttgtggc aacacccact
    21241 gttcgttctt caacgactcc agcgtggtgg tgccggtgca tgttcgggac ttactggcta
    21301 ccagcacaaa ctcggactcg aacagcggct caacatgtaa atcctgaagc ttcatttctg
    21361 cacttaacgt accaatcgca aaatccagtc gaccgtcgcg gattgccggt aagaacgaag
    21421 acagttgcgc ttcatacata gaaacctgcg ctttcgggaa cacctctttg aacttgttga
    21481 tcatccctga cataaaagta aaaccaatca atgaaggaaa accaaatgag acttccacca
    21541 ccgcctcaga agacataccg cttatctcat taaccatatt tttcatttca cgggtaatgg
    21601 attcggaacg ggagagtaac aattgaccgg caggtgttaa tgttacaccg gtatttttcc
    21661 gcaccactaa ttccacacca aaataatctt caatatcgtt aatgatttta ctgacggccg
    21721 gttgagttaa ccctaattct tttgcagccg agccgataga gccacttcta atgacttcct
    21781 gaaagactac caggtgctgc gttttcggaa gaagaatagt gctcataacg acctacgtta
    21841 attacctcat tgacggcatg aagtgtatca aaatgaaatg aacaggatat gtgcgaccac
    21901 tcacaaatta actttcatta ctttccaggg tatcgttatt acaattaaat atctttaaat
    21961 atcaacaagt taaaacataa aaatcagcat aaaccctgat ttttatcaaa aaaaatgacg
    22021 gggataacca tattttatgg cgataacatc attcgttatg tggttaatac aaaaaagggg
    22081 ctgagaccat atttcaagca attaccggat aattaccagg caaaatttga gttaaattta
    22141 atgagcaagt tctcaaattt tattataaat aaaccatttt cagcgataaa tactgcggca
    22201 cgtcacattt tttcacgcta tttgttggag aacaaacatt tattttatca atattttaaa
    22261 atttcgaata caggtattga tcatctcgaa caattgatta acgtcaactt tttctcttct
    22321 gacaggacgt cattttgtga atgcaatcgt tttccataaa ttcttctccc ctcataggcg
    22381 acgaatagca ttttgtgttg aggatcacaa aacaaataat tgctggtcgc cgcgataagg
    22441 tcagacgaag tcaacaaggg gaattttcac tgtgctttac atcagcgtag gacacagaat
    22501 gttgcttcgt ttactgtaac gccgggtaaa tgagcgtttt ttgatagtgc gtaagtgtcg
    22561 tgcgaggaaa ataagcatct attattgttt gtcatgacga caaggcaggc atcaatgaaa
    22621 ggcttcccaa ttgcacatat ttttcaccct tcaatcccgc caatgcacgc agtggttaac
    22681 aatcacaata gaaatattga ttattggacg gtaaaaagaa agtttgcaga aattgtctcc
    22741 accaatgacg ttaaaaaaat ttacagtata agtaatgaac
//
LOCUS       DAJVUY010000060        22767 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.060, whole genome shotgun sequence.
ACCESSION   DAJVUY010000060 DAJVUY010000000
VERSION     DAJVUY010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22767
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.060"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            112..718
                     /locus_tag="OQQ72_002034"
                     /pseudo
     CDS             112..718
                     /locus_tag="OQQ72_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544752.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            821..1323
                     /locus_tag="OQQ72_002035"
                     /pseudo
     CDS             821..1323
                     /locus_tag="OQQ72_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
     gene            complement(1390..2847)
                     /gene="nuoN"
                     /locus_tag="OQQ72_002036"
     CDS             complement(1390..2847)
                     /gene="nuoN"
                     /locus_tag="OQQ72_002036"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HCS2011772.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQSLISIVRLAMPLM"
     gene            complement(2854..4383)
                     /gene="nuoM"
                     /locus_tag="OQQ72_002037"
     CDS             complement(2854..4383)
                     /gene="nuoM"
                     /locus_tag="OQQ72_002037"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HCS2011773.1"
                     /translation="MLLPWLILIPFIGGFLCWQTEHFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4547..6388)
                     /gene="nuoL"
                     /locus_tag="OQQ72_002038"
     CDS             complement(4547..6388)
                     /gene="nuoL"
                     /locus_tag="OQQ72_002038"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HCS2011774.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(6385..6687)
                     /gene="nuoK"
                     /locus_tag="OQQ72_002039"
     CDS             complement(6385..6687)
                     /gene="nuoK"
                     /locus_tag="OQQ72_002039"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HCS2011775.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6684..7238)
                     /gene="nuoJ"
                     /locus_tag="OQQ72_002040"
     CDS             complement(6684..7238)
                     /gene="nuoJ"
                     /locus_tag="OQQ72_002040"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HCS2011776.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(7250..7792)
                     /gene="nuoI"
                     /locus_tag="OQQ72_002041"
     CDS             complement(7250..7792)
                     /gene="nuoI"
                     /locus_tag="OQQ72_002041"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HCS2011777.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7807..8784)
                     /gene="nuoH"
                     /locus_tag="OQQ72_002042"
     CDS             complement(7807..8784)
                     /gene="nuoH"
                     /locus_tag="OQQ72_002042"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HCS2011778.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8781..11507)
                     /gene="nuoG"
                     /locus_tag="OQQ72_002043"
     CDS             complement(8781..11507)
                     /gene="nuoG"
                     /locus_tag="OQQ72_002043"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HCS2011779.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11560..12897)
                     /gene="nuoF"
                     /locus_tag="OQQ72_002044"
     CDS             complement(11560..12897)
                     /gene="nuoF"
                     /locus_tag="OQQ72_002044"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HCS2011780.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12894..13394)
                     /gene="nuoE"
                     /locus_tag="OQQ72_002045"
     CDS             complement(12894..13394)
                     /gene="nuoE"
                     /locus_tag="OQQ72_002045"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HCS2011781.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(13397..15199)
                     /gene="nuoC"
                     /locus_tag="OQQ72_002046"
     CDS             complement(13397..15199)
                     /gene="nuoC"
                     /locus_tag="OQQ72_002046"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HCS2011782.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(15293..15955)
                     /gene="nuoB"
                     /locus_tag="OQQ72_002047"
     CDS             complement(15293..15955)
                     /gene="nuoB"
                     /locus_tag="OQQ72_002047"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HCS2011783.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15971..16414)
                     /gene="nuoA"
                     /locus_tag="OQQ72_002048"
     CDS             complement(15971..16414)
                     /gene="nuoA"
                     /locus_tag="OQQ72_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HCS2011784.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(17045..17983)
                     /gene="lrhA"
                     /locus_tag="OQQ72_002049"
     CDS             complement(17045..17983)
                     /gene="lrhA"
                     /locus_tag="OQQ72_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HCS2011785.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18902..20119
                     /gene="alaA"
                     /locus_tag="OQQ72_002050"
     CDS             18902..20119
                     /gene="alaA"
                     /locus_tag="OQQ72_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase AlaA"
                     /protein_id="HCS2011786.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            20203..20801
                     /gene="yfbR"
                     /locus_tag="OQQ72_002051"
                     /pseudo
     CDS             20203..20801
                     /gene="yfbR"
                     /locus_tag="OQQ72_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
     gene            complement(20860..22692)
                     /locus_tag="OQQ72_002052"
     CDS             complement(20860..22692)
                     /locus_tag="OQQ72_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HCS2011787.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEVSPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
BASE COUNT         5844 a         6275 c         5695 g         4953 t
ORIGIN      
        1 tgtatagatc taacaaccgt aataaaacaa atactcataa ctcattataa ataatgataa
       61 aataacgtct tttattgata atttatatat gggaaaaatt ccttttgtta tattgtttct
      121 gatttcactc cctctgatta tttttaccaa ccctgggtca ctgcattacc accaacgccc
      181 cgacacgtca gtcctgagca attagaaaaa acagttcgtt atcttacaca aactgtgcat
      241 ccacgtaatg ccgacaatat tgataatctg aataggtccg tagagtatat aaaagagttc
      301 tttgtcagta gcggtgccag agttaccgcg cagggcgtcc ccgattggct attacgactc
      361 tgcgcctggt agccaggatt acctttaccc gcaatgtcct ggctttatcc cgatcggggg
      421 gactttattg cctggtcggc agaatacagg atatcaacgc cgttcgtcag gtaaaaacgg
      481 cattgttatc atcccgggat ttatctgttt attctatgaa tgccccatgg tttattcccg
      541 gtattgattt ctctgaccac ctgaattatt ggcaacacga tattcccgcc gtaatgatta
      601 ctgacaccgc tttttatcgt aataaacaat accacttgcc cggtgataca gcagacagat
      661 tgaattatca gaaaatggct cagatggtgt tataaccttg ttacacaaca gtaaataata
      721 aaaatttctc gaggcgggtc cagaaacagc gacatgtaca ttttattttc cctcgtctgt
      781 tttaagatgc gaaacataaa attcaatgga ggaaaaataa atgggaatga ttggttattt
      841 tgcagaaatt gactcagaaa agattaacca atctgcttga gtctactgaa aaacctttga
      901 tggataatat acatgacacg ctttcaggat tacgccgact ggatattgat aaacgctggg
      961 attttttaca ctttgggctg acaggcaccc ctgcttttga tcccgcgaag aatgatccgc
     1021 tgagtcgtgc cgtgcttggt gaacacagcc tcgaagatgg catagatggc ttcctgggat
     1081 tgacctggaa tcaggaatta gccgcgacaa tcgaccgact ggaatcactg gatcgaagta
     1141 agctgcgtaa acagttttcc attaagcgac tatgaaatgg agatttatcc gggagtgacc
     1201 ttttcagaag agttagaggg gcaactcttt gcctcgatca tgcttgatat ggaaaagctg
     1261 attagcgcgt atcgacgtat gctgcgacaa gggaatcatg cgctgacggt tattgttggg
     1321 tgatggtgtc agagcgccaa aaaaaaccgc cgaacatgtc ggcggttttc tgacttacaa
     1381 actaacagat tacatcagcg gcattgctaa ccgcacaata ctaatcagcg attgtggcca
     1441 tacacccagc accagtacca acagtgcaga aatcagcacc acgataccgc ccgcgctgta
     1501 ctgccagttt gacggtgcat cgcgacccgg ttgttccggt gcgtgcaggt acaggctcac
     1561 cgccacgcgc aggtagtagt agaggccgat tgccgaaccg acaaccacgg cacccaccag
     1621 ccaccacaag tgtgcctgga caccgaccgc cagcacgtag aacttaccga taaagcccag
     1681 cgtcatcggg ataccggcca gagacagcat catcaccgtc atcactgccg cgaggatcgg
     1741 acgatgccag aacagaccgc ggtaagagaa cagggaatca gcatccgggc cacgatacgg
     1801 gctggacatc aggctgacca cgccgaacgc gccgaggctg ctgaacagat aaccggccag
     1861 gtaaacccct accgcttcca tcgacatctc gccggtttgc agcgcaatca gcgccaccag
     1921 cagatagccg aggtgagaga tagatgagta accgagcaga cgtttgatgt tggtctggct
     1981 caacgccatc aggttaccga agatgatgga ggcaaaggcg ataatcgcca gtactacgcg
     2041 aatcgcttcg ctgtcaccca ccggtgcata gaggaacaga cgcatcacca caccgaagat
     2101 agcgattttg ctcgccgtcg ccaggaaagt ggaaaccggc gcaggcgcgc cctggtatac
     2161 gtctggcgtc cacaggtgga acggcaccag agagagtttg aagccgaggc caacaatcat
     2221 catgccgaaa cctgccagca acagcggctc gttgagcata ccgtcgccga ggtttttacc
     2281 cagcgcgaca aacgacaggt cgccagactg cgcatacacc agcgccatac caaacagcag
     2341 gaaagaagac gctgcggcag aaaggatggt gtatttgata ctggcttcca gcgaacgttt
     2401 ctggcggaaa gcgtaaccga ccaggccaaa cagcggcaaa gagatcagtt caataccgag
     2461 gaacagagac gccagatggt ttgcattcgc cagcaggatc ccgcccagcg cggcaattaa
     2521 caccaacagg tagaactcat ccttgttgtc gttatagcct tcaagccacg ggtaggcgaa
     2581 agtacaggtg gcgaggctcg ccaacaatac cagcccggtg taaagcatgg cgaaaccatc
     2641 aacgcgcatc agcggcgtaa cgtccatagc gcccgcctgg ccaacaaacc agagcgaaac
     2701 cagcgccgcg ttaagcccaa taaccgagag cgtagcgttg aggaaatgat tgcgtcgcca
     2761 cgcaatggag agcatcacaa ccaccaccgt taagccgacg atcagcaacg gtagcagtgc
     2821 gatcaggttt tgtggagtta ttgtcatggc gatttacggc cttgtagtag taacggaatt
     2881 aacaaaccac tgctggatat tgccaatcgc ggagtgcgag gtatccagaa tcggctgcgg
     2941 atagaagccc agcagtacca gcagcaccac cagcaacagg atcataaaca gctcacgcag
     3001 cgacatccct ggcagttcct ggctggcaat ctggcttttc gctttaccga agtaagcgcg
     3061 atgcaacatc gccagcgaat aaacagatgc aaagaccagc ccaaaggtag agataacggt
     3121 aatcaccggg acaacctgga agctgccgaa cagaatcata aattcgccga cgaagttacc
     3181 ggtgccaggc atcccaagcg ttgccaccgc aaagaacagc gacaatgctg gcagccattt
     3241 catcttgctc cacagaccgc ccatcatgcg catgtcgcgg gtatggatac gttcataaag
     3301 ctgaccacaa agaataaaca gacccgccgc cgacaaaccg tgcgcaatca tctggattac
     3361 cgcgccctgg taggccaact ggctgccggt gtagatagca atcagcacga agcccatgtg
     3421 ggaaaccgag gtgtaggcga tcagacgttt gatatcggtc tgggcgaagg ccatccacgc
     3481 accgtagaag atgccgataa cacccagcca catagcaatt ggcgcgaact ctgccgacgc
     3541 gttcgggaac agcggcaggg agaaacgcag caaaccgtaa gcggcagttt tcagcaagat
     3601 ccccgcgaga tcaacggaac cggcggtcgg agcctgggag tgcgcatccg gcagccagcc
     3661 atgcagcgga accaccggca ttttgactgc gaaggcgatg aagaagccca gcattaacag
     3721 gtattccaca ccactggaca ttggcgtatt cagcagctct tcatagttga aggtccagac
     3781 gccggtcgca ttgtagtgaa caaaaaccag cgccaggatg gcaatcaaca tcaccaggcc
     3841 actcgcctgg gtgtaaatga agaacttggt tgccgccgtg atacgcgttt taccgtcaga
     3901 ggctttatgc ccccacagtg cgatcaggaa gtacatcggc accagcatca tttcccagaa
     3961 gaagaagaac aggaacatgt cgatggcaag gaacacgccg ataacgccgc ccaggatcca
     4021 catcaggttg aggtggaaga agccctgata tttttcgatc tctttccacg aacagagtac
     4081 cgccagcaca ccgagcagac cggtcagcac gaccatcagc agcgacagac cgtcaatggc
     4141 gagatgaata gagataccaa aacgcgggat ccacggcatg tcgaattcag actgccactg
     4201 cggaattccg gcggattgcg tcagtgaata accgccctgc aaccacagtt gcagcgacag
     4261 cgccagcgtc aatcccatgg tgatcagcgc gatccagcgt ggcaccttga cgtcaaagtg
     4321 ttcggtctgc cagcacagga agccgccaat aaagggaatt aatattagcc agggtagtaa
     4381 catggcgatc tttattcctt gtaaaagtcc cgtcaggacc ggattttcaa cgaattctca
     4441 cgacagaaaa ttctcttcgg actgggggta gtgtcggatg cgccgcgaag gcagcttatc
     4501 cgacctacgt tcttatatgc ccaggggcaa tcccacaatc cttaactcaa cgcagtacca
     4561 tcaacagtgc cagcaccacg accgcaccga tgctcatgga tgccacatac cagcgcagat
     4621 aaccgttctc gcttaacagc aggcctttac ctgcaaagcg ggaaagaacc gccggaatgt
     4681 tcatcattga gttcagcgga tcgcgtttca gcaaccaggc aatacccaga aacggcttga
     4741 cgaacacttt gtcgtacagc cagtcaaagc cccaggcgtt gtaccaccag gtgcccagca
     4801 gacggcccgg cgcactgttg gcaatggagg tcaccagagt acgtttaccc tgccacagcc
     4861 aggctgccag cagaatgccg accaccgcga ccacgccaga ggtaatttcc agggtcaaca
     4921 tgctgccgtg cgccagttcc gtcgtttgcg gaagcacgct ctgcagcggc ggtacaatca
     4981 gtgcgccaac gaaggtggaa aggatcagca gcacaatcag cggcaggctg tgagttaccc
     5041 ctttcacggc gtgagcgtga atttgttctt ttccgtggaa gacgatgaaa atcatacgga
     5101 aggtgtagag cgaggtcata aacgcaccga ccagacctgc caccatcaga ttgatatgac
     5161 cattcgccat cgcacccgcg aggatctcat ccttactgaa gaagcccgca gtgaccagcg
     5221 gtagtgccga cagtgctgcg ccgcccacca ggaagcagaa ataaaccagc ggaatagatt
     5281 tacgcagacc gcccatcttg aagatgttct gttcgtgatg gcaggccaga atgacggaac
     5341 cggatgccag gaacagcagc gctttaaaga acgcgtgagt catcaagtgg aaaatcgccg
     5401 catcccatgc ctgcacgcca agcgcgagga acatgtagcc aatctggctc atggtagagt
     5461 aagcgagaac acgtttgatg tcggtctgta ccagcgcggc aaaaccggcc agcagcagcg
     5521 taaccgcccc gacaatgccc accagatgca gaatttccgg cgtcatcagg aacaggccgt
     5581 gggtacgggc gatcaggtag acacccgcgg ttaccatggt tgcggcgtgg atcagcgcgg
     5641 agacaggcgt cgggcccgcc atcgcgtcgg caagccatgt ctgcaacggc aactgcgcag
     5701 atttaccgac cgcaccgccc agcagcatca gcgtcgccca catcagcatg ttattgccgt
     5761 cagcaaagtg cgctggtgcc agttccacca tttcgcggaa gttcagggtg cccagttcgt
     5821 tgtaaagaat gaacagcgcg aaagcgagga acacgtcacc cacacgggtc acgacgaacg
     5881 ctttcattgc cgctgcgcca ttcttcggat cggtgtaata gaacccgatc agcagatagg
     5941 agcacaggcc cacgccttcc cagccgaggt acatcagcag caggttatcg gcgagaacca
     6001 gaactaccat gctggcgatg aacaggttgg tgtaggcgaa gaagcgagag tagccctctt
     6061 caccgcgcat gtaccaggag gcgtacatgt gaataaggaa acccacacca gtgaccaccg
     6121 agagcatggt cagcgacagg ccgtccagca ccaggttaaa accgatgtta aagtcgccta
     6181 ccgacatcca cgtccacagc ggctggctgt atgcctgctc gccgttagcg aagaaatcaa
     6241 cgccgataaa ggcggttacc agcgccgcca ggcccacaga gccaacgccg acgatcgccg
     6301 aaacgttttc agaccagcgc ccacgggaga acgccagcag gacgaagcca atcaatggca
     6361 aaataatggt taaggcaagc atgttcatcc gcgcatctca cttactgaat cgatgttcag
     6421 gttctggcga cgacggtgaa gttgcagcag cagcgcaagg ccgatactcg cttctgccgc
     6481 cgcgaggctg atggcgagaa tgtacatcac ctgaccgtcg gtctgacccc agtagcttcc
     6541 ggcgaccaca aaggccagcg cggaggcgtt aatcatgatt tccagaccaa tcagcataaa
     6601 cagcagattg cgacggataa ccagaccggt taagccaaga acgaataaga ttgccgagag
     6661 gatcagtcca tgttgtaagg ggatcatgcg tgctcctccg tttttctttt cgcgctgtcg
     6721 tctttacgat tgctcagcac ttcacccgca cgctcttcac gaccgacgtg gaaggccaca
     6781 accagacccg cgagcagcag catagaagcc agttccaccg ccagtacgta aggcccgaac
     6841 agcgtaatac ccactgcttt agcactgatt ggcgtaccgt cgataccctg atcattaaca
     6901 ccaaggatgg cgtaaacaat caccaccagc atgatggccg acaaaattgc cggaccaatc
     6961 cacacctgcg gtttcagcca ctggcgttcc tgttcgattt ctgaaccgcc caggttgagc
     7021 atcatcacca cgaacacgaa cagcaccata atggcacccg cgtagacgat aatttccagc
     7081 gcaccggcga agtaagcgcc cagtgagaag aacaccccgg aaatcgccag cagcgaaata
     7141 atcaggtaca gcagtgcgtg taccggattg gtatgggtga tcactcgcaa ggtcgcaagt
     7201 atggctatca ggccacagat ataaaaagcg aactccattg cccctctcct tacggtaaca
     7261 ggctcttgac gtcgataggc ttggcttcgt tctctgcttc gcccttatct ttgccgtcga
     7321 ttgccatacc tgccatccgg tagaagttat attccgggta tttgcccgga ccggagatca
     7381 gcagatcctc tttttcgtaa accagatcct ggcgcttgta ttcccccatt tcgaaatccg
     7441 gggttaactg aatcgccgtg gtcggacagg cttcttcgca cagaccacag aaaatgcagc
     7501 gtgagaagtt gatgcggaaa aattccgggt accagcgacc gtctttggtt tctgcttttt
     7561 gcagcgagat acagccgacc gggcaggcta ccgcgcagag gttacaggct acgcaacgct
     7621 cttcgccgtc cgggtcgcgg gtcagaacga tacgaccacg ataacggggc ggcagataga
     7681 ccggctcttc cgggtacatt cgcgtttcgc gtttggcgaa cgcgtgcagg ccgatcatcc
     7741 agatactacg aacctgggtg ccgaaaccta ctaacaattc ttttaaggtc atggtcttat
     7801 tgccccttat tgcgcctgcc agagaatgac agccgccgtt accagcaagt tgatcagcgt
     7861 cagcggcagg cagattttcc agccgaagga cattacctgg tcataacgcg gacgcggtaa
     7921 cgacgcacga atcaaaatga acatcatcat aaagaacgcg gttttcaacg cgaaccagat
     7981 gaatggcggt aacaacgggc cttgccagcc accgaagaac agcgtcacca tcaatgcaga
     8041 gatggtcaca atcccgatgt actcacccac gaagaacaga ccgaacttca taccggaata
     8101 ttcaatgtgg taaccatccg ccagttcctg ctcggcttcc ggctggtcaa acgggtgacg
     8161 gtgacatacc gccacgcccg cgatggcaaa ggtaataaaa ccaaagaatt gcgggataac
     8221 gttccacaca tgcgcctggc tgttgacgat gtcggtcatg ttgaatgaac cggcctgcgc
     8281 caccacgccc atcagggaaa gcccgaggaa cacttcgtag ctcagggtct gcgcagaagc
     8341 acgcatcgca cccagcaacg agtatttgtt gttacttgac cagcccgcaa acagcaccgc
     8401 gtaaaccgcc agacctgcca tcatcaggaa gaacaaaatc ccgatgttca ggtcggcaac
     8461 cacccaaccc ggactgactg gcacaatcgc aaaggccagc agcagcgagg taaaggcaat
     8521 catcggtgcc agggtaaaga tgacgcgatc cgagaatttc gggatccagt cttctttaaa
     8581 gaacattttg atcatgtccg caaccagctg gagcgaaccg ccccagccaa cacggttagg
     8641 tccataacgg ttctggaaca gacccagcag gcgacgttcg ccaaagctca tgaatgcccc
     8701 acaggtgaca accaccagca ggatcaccac cgctttgagg atggtcagca ggatctcaat
     8761 cagttccggt gatatccaac tcattgttgt gcctccttga gatcctcaag atgcgcgcca
     8821 gccagcaccg gagcaatgcc ggacataccc atcggcaagc ccacctgccc tgccgtcagt
     8881 ccttcggcga tttcaaccgg cagcgtgacc gtgttgccat cgtaactaaa ggagacgcgt
     8941 gtacctgcgt tcacacccaa cttcgcggca tccgctgggt tgagtttgat gtacggctgc
     9001 ggcatacggc tctggaagac cggagcacgc tgtgacaatt catcgctgcc aaacaggtgg
     9061 taatacggcg caatacgcca tttcccgtcc tgcggctgga agcgtgccgg tacgctggtg
     9121 aagtaatcca gaccattctc gctggtttca aacagacgca cgcccggatc gccaaagcgc
     9181 agtttgccgc ccacttcgtc ctggaatttg ttccacgcct gcggggagtt ccagcccggt
     9241 gcccaggcaa acggcacttg cgaacggtgc gcggtcggct ggttgttacc ttccatcgag
     9301 aaggtgaaca tggtgtcaat atcctgcggc tgacgcggct catgaacgct gatattggcg
     9361 cgcatggcgg tacgaccgct gtaacggtgc ggttcacggg ccagtttctg cccacgaata
     9421 cggaatgtcg catccggcgc agcatctttg atacctgcca gttccgggat tttcgccaca
     9481 acagcgtcaa tcacatggtc gagctgcgtc cagtccactt cacggctcag cagggtgctg
     9541 tgcagcgagt gcagccagcg ccagctttcc agcatgacag ttttgctgtc gtaataagcc
     9601 ggatcgtaaa cctggaagaa acgttgggcg cgaccttcat tattaattac cgtaccgtcg
     9661 ctttcagcaa agctggcggc ggaaagtacc agatgggcgt tttccatgat cgctgtacgc
     9721 tgatggtcaa ccaccatcac cagcggtgct ttagccagcg cagcattcac gcgggtagca
     9781 gaagcgtgac gatgcagatc gttttccaac accaccaccg cgtcggcgcg tccggtttcc
     9841 agttcggtta acgcttcttc aagcgaaccg ccacccataa tgcccagccc catgctgttg
     9901 acggaacggg caatcatggt gataccgacg tcagcgccgc gacctttcag ggctttcgcg
     9961 acgttagccg ccgcctgaat cacctctaag ctaccggcgt tcgtcccgga gataatcaac
    10021 ggtttcttcg cacctgccag tgcctgcacg atgacgtcga ttttgctttg cagctcaggt
    10081 tcgataccgt caaccgctgg tgcagagtta tccagcgcat gggcgatggc aaaacctaaa
    10141 cgcgcctgat cttcaaccgg tgcgcggtaa gtccacgccg cgatatcatc caaacgggtg
    10201 tcatcaacgt tggtaacaaa cagcggatgc ttcgcacgtt gaccgatgtt aaggattgcc
    10261 gcaatctgcc agtcagccac tttctgtgct gccgccattt cgcgcgcttt acctttcacc
    10321 gcctgacgca ctgccagcgc gacgcgcgcg ccggtctggg taacgtcttc gcccagcacc
    10381 agtaccgcat cgtaagattc gatttcgcgc agagccggag tataaatgcc gccttcacgc
    10441 agcactttca gcgccagttg cagacgttcc tgctcaccgt gagcgatacc ggtgtagaag
    10501 ttttcttcgc ccaccagttc acgcagtgca aagttgcttt ccacgctggc acgcggagaa
    10561 ccaataccga tcactttctt cgactgacgc agaatatctg ccgcgccctg cattgcctgt
    10621 tcggcgttga gggtaatgaa atcatcgcca cgacgctgta ctggctgacg cggacgatcc
    10681 ttcaggttga cgtaaccgta accgaaacga ccacggtcgc agaggaagta gtggtttacc
    10741 gtaccgttgt aacggttttc gatacgacgc agttcgccgt aacgttcacc ggggctgatg
    10801 ttacagccga tggaacattg ctggcagatg ctcggcgcaa actgcatatc ccatttacgg
    10861 ttgtaacgct cggagtgcgt tttgtcggta aatacgccgg tcgggcaaat ttcgaccagg
    10921 ttaccggaaa attcgctttc cagcgtgccg tcttccgggc gaccgaagta gacgttgtcg
    10981 tgcgcgccat aaacgcccag atctgtaccg tcagcgtaat ctttgtagta acgcacacag
    11041 cggtagcagg cgatgcagcg gttcatttcg tgagatatga atggccccaa atcctgatta
    11101 cggtgggtac gtttggtgaa acggtagcga cggaagctgt gtccggtcat cacggtcata
    11161 tcctgaagat ggcagttacc gccttcttca cataccggac agtcgtgcgg gtggttggtc
    11221 attaaccact cgaccacact ttcacggaac tgtttcgctt cttcgtcgtc aatggaaata
    11281 aaggtgccat cggaagccgg tgtcatacag gacatcacca ggcgaccacg cgtgtcttcc
    11341 gcgttttggt attgcttcac cgcacactgg cggcaagcac cgacgcttcc cagcgccgga
    11401 tgccagcaaa agtaaggaat atcaaggccc agagacagac aagcttccag caggttgtcc
    11461 gctccgttga cctcgtattc tttgccgtct acatgaattg tagccattag catgcttcca
    11521 gttttctcgg tcagggaccg agcgttaatc gaaattcggt taccagcgct ctttcagcag
    11581 gttcggctga atcccattaa tcaaatgggt attgctgaac ggctgtttga ttcccgcctc
    11641 aaattcttcg cggaaatatt tgatggcgct ctgtaacggc tccactgcac caggtgcgtg
    11701 ggcacagaaa gttttacccg ggcctaagaa tcgacacagt tgctcaagtg tttcaatatc
    11761 gcccggctgg ccttcgccac gctccagcgc acgcagaatt ttcacgctcc acggcagacc
    11821 gtcgcggcac ggcgtacacc agccgcagga ctcacgggcg aaaaactctt ccaggttacg
    11881 caccagcgac accatgttga tctcatggtc aaccgccatc gccagcgccg tacccagacg
    11941 gctgcccgct ttaccgatac tttcgaattc catcggcaga tcaaggtgcg cttcggtcag
    12001 gaagtcagtc cccgcgccgc ctggctgcca ggctttaaat ttcagaccat cacgcatacc
    12061 accggcgtaa tcttcgagga tctcgcgtgc ggtggtgccg aacggcagtt cccacagtcc
    12121 cggatttttc acccgaccgg agaagcccat cagcttggtg ccagcatctt tacttttcga
    12181 gatgttctga taccactcca cgccgttagc gaggatcgcc ggaacgttac acagggtttc
    12241 gacgttgttg acacaggtcg gtttgcccca tacgccggag gttgccggga aggggggttt
    12301 cgagcgtggg ttagcacgac gcccttctag ggagttgatt aacgctgttt cttccccgca
    12361 gatgtagcgc cctgccccgg tatggacgaa cagttcgaag tcgaaacctg ttcccataat
    12421 gtttttgcca agcaagcccg cttcagtggc ttcggcaatg gcgcggcgca gatttactgc
    12481 cgcttcgata tattcgccac gcaggaagat gtagccacgg taagctttca gcgcaaacgc
    12541 ggagatgagc ataccttcca ccagcaggtg cggcagttgc tccatcaaca ggcggtcttt
    12601 ataggtgccc ggctccattt catcggcgtt acacagcagg taacggatgt tcatggattc
    12661 gtctttcggc atcaggctcc acttcaggcc agtagaaaag cccgctccgc cgcgcccttt
    12721 cagaccagcg tcttttacct gattaacgat ttcgtccgga gacagcccgg tcagcgcctt
    12781 acgcgcccct tcgtaaccgt ttttgctgcg gtattcgtcc agccacactg gctgtttgtc
    12841 atcgcgcaga cgccaggtca gcggatgcgt ttcgggagta cggataatgt ttttcattta
    12901 taccgctcca gcagttcagg gatcgcttcc ggggtcagat gcgcgtgagt gtcctcatcg
    12961 atcatcatgt ttggcccttt atcacagttc cccaggcagc aagttggcag cagcgtaaag
    13021 cggccatcaa atgtcgtttg ccctggtttg atgttcagct ttttctcgag cgccgcctga
    13081 ataccctgat acccgttgat atgacagacc acgctgtcgc aataacggat cacatggcga
    13141 ccaaccggct ggcggaagat ctgactgtag aacgttgcca caccttcgac gtcgcttgcc
    13201 ggaataccca gcacatcggc gatcgcgtgg atcgcaccat ccggcaccca gccacgctgc
    13261 ttctgaacga ttttcagcgc ttcaatggac gccgcacgcg ggtcttcgta gtggtgcatc
    13321 tcgtgctcaa tcgcttcacg ctctgccgca ctcagctcaa aagcctcggt ttgtggttgt
    13381 tgattctcgt gcataattag cggtccacat ctgacataac aaaatcgata ctgcccagat
    13441 aaacaatcag gtcagacacc aggctgccgc ggatcgccgc cggaatttgc tgcaaatgcg
    13501 cataactcgg cgtgcggata cgagtgcgat aactcatggt gctaccgtcg ctggtcaggt
    13561 agtaactgtt gatccccttg gtcgcctcaa tcatctggaa agattcattg gcaggcatca
    13621 ccggccccca cgacacttgc aggaagtggg tgatcagggt ttcgatatgt tgcagcgtgc
    13681 gctctttcgg cggcggcgtg gtcagcgggt gatccgcttt gaacgggcct tccggcatgt
    13741 tgttgaggca ctgctcaaga atgcgcagac tctggcgcag ctcttccact ttcagcatta
    13801 cgcgggtgta gcagtcagaa acaccaccac caaccgggat ttcaaagtcg aagttttcat
    13861 agccagaata aggacgcgcc ttacgcacgt cgaagtcgat cccggtagca cgcaggcccg
    13921 cgccagtggt gccccactcc agcgcctctt tcgcgccata ggcggcaacg ccctgggaac
    13981 gacctttcag aatggtattt tgcagcgccg ctttctcgta agacgccaga cgtttcggca
    14041 tccagtcgag gaactcacgc agcaggcgat cccagccgcg cggcaggtcg tgcgctacgc
    14101 cgccaatacg gaaccacgcc gggtgcatac ggaaacccgt gatcgcttcc accagatcgt
    14161 aaattttctg acgatcggta aaggcgaaga acacgggcgt cattgcgccg acgtcctgaa
    14221 taaaggtcga gatgtacagc aggtggctgt tgatacggaa cagttcggag agcataacgc
    14281 gaatgacgtt aacgcgatcc ggcacggtga tcccggccag tttctctacc gccagcacgt
    14341 aaggcatttc gttaacgcag ccgccgaggt attcaatacg gtcggtatac ggaatgtagc
    14401 tgtgccagga ctggcgctcg cccattttct ccgcaccacg gtggtggtag ccgatgtctg
    14461 gtacgcagtc gacaatctct tcgccgtcga gttgtaaaac gatacggaaa gccccgtgcg
    14521 ccgacgggtg gttcggaccg aggttgagga acatgaagtc ctcgttttcg gtgccgcgct
    14581 tcatccccca ctcttccggt ttgaaggtca gggcttccat ctccagatcc tgtttggctt
    14641 tggtcagctc aaacggcgag aattcggtag cgcgcgccgg gtaatcttta cgcagcgggt
    14701 gacctttcca ggtttgcggc atcatgatgc ggcgcaggtt cgggtgaccg tcgaaagtaa
    14761 tgccaaacag atcccaggtt tcacgctcat accagttagc gttcgggaac agtttggtga
    14821 aggtcggtac gtgcaggtcg ttttctgcca gcgccacctt cagcatgatg tcgcggttac
    14881 gatcgataga aatcagatgg tagaaaacgg aaaaatccgc ggcaggtaac ccttcgcggt
    14941 gtgtgcgcag acgttcgtcc atgccgtgta agtcaaacag catgacgtaa ggtttcggca
    15001 gtttctttaa gaaatcgcca acttccagta attgttcacg cttgatccac acaacgggaa
    15061 ccccggtgcg agtcgcctga acagtaaagg catccggccc aaaacggttg cgcagttcgc
    15121 caattaccgg atcatcaaga tgatcgcggg tctgccaggc gggttcttgc gcggttaagt
    15181 cggtcatatt gttcaccatt gcaaatggtc cgtggtgact gtcggcgcag taagcttcgc
    15241 gaaatagatt taggaataag cgaagaaaaa tccctttgcc gacaggcgca aattaaatct
    15301 cgtcaggtgt acgcaggttg gttacggcaa tgcgttcacc gcgcttgcgt tcgcgctctg
    15361 attgcatatt ggcgcgataa acgccctgat cgccaaccac ccaggagagc ggacgacgtt
    15421 ctttgccgat agattcctgc aacagcatca gtgcctgcat gtacgcttca ggacgcggcg
    15481 ggcagcccgg gatatacaca tcaaccggga tgaatttatc gacgccctgc acaacggaat
    15541 aaatatcgta cataccacca gagttggcac aggcacccat tgagataacc cattttggtt
    15601 ccagcatctg gtcatacaga cgctgaataa ccggtgccat tttggtaaag caggttcctg
    15661 caaccaccat caggtcagcc tgacgcggcg aagcacgcaa tacttctgcg ccaaaacgcg
    15721 ccacgtcatg caccgcggta aacgaagtca ccatctcaac gtaacagcag gaaagaccga
    15781 agttatacgg ccaaattgag tttttacgac cccagttaac catgtcattg agcttgccca
    15841 taaacacgtt tttgttaact tcttgctcca gagggtcggt tacgatctcc tgcttttgca
    15901 gggggtaacg gtcgttctca ccgttgggat ctatgcgggt gagcgtataa tccatcttaa
    15961 tgcctcgcgg ttagcgttga cgattagcga tactgttcgt ttccgggttc atacgctcgc
    16021 ggcgtgaacg cgcgggcgtc cagtccagcg cgccaatacg caccagataa accagacctg
    16081 ccagtaacac aaaaataaaa attgcagctt ccacaaagcc tacccagccg ctttcgcgga
    16141 tagaggttga ccatgcgaac agatacagcg cttcaacgtc gaagataacg aagaacatgg
    16201 ccaccagata aaacttggcg gacaggcgta agcgggcgga gccgaccgag tcgataccgg
    16261 attcaaacgg cacgtttttc gacctcgcgc gtgcgcgacc gcctaaaaac caaccaccta
    16321 ccagcattag gcaacacagg ccaatggcaa cgataagaaa gatagcgaat gcccagtgat
    16381 gagcgatgac ttcagtggat gttgacatac tcattgctta ctcatcaaaa gtagcgccag
    16441 attcactgct cttcacggca gatggacgcc acatcgattc atggggagga ataaaaaaaa
    16501 ccttacaatc actgtagaaa ttcttttata cagctaattg atgtggtctt ttactccttt
    16561 ctataacctt ttgtcaactt taacaaaagt ttcttcacat tagtttacat aatatcaaca
    16621 ccattagcat ttaatgccct ttcaccccag atccttgacg actccaggat aattagatgt
    16681 tgttgaatcg tgtccgttgt gaagcaatgg aaaaaatacg ggtctatttt gacaggaatt
    16741 tgtgtcgatt cctcccccca aaagagagta ttttcttgat ctgtgacacg cttttgtcat
    16801 tccataacaa aaacgcagca acaaatttac gtatttttta acatcattgt agcaggtgat
    16861 ttttttcagg cgattatttg tgcgttcggg acgtgaatct ctggtgattg aaaaatgaac
    16921 agttttgtac gttctgcact atgcgaggaa ggatttttac taaaaaaaag ccgctggggt
    16981 ttaaaacacc cccagcggct cgttttttac actattgtct caggaattat ctatcgtccg
    17041 tcgattactc gatatccctt tcaatcaaca atgaatcatc cccttccgga gcagacattg
    17101 ggctgtattg ccacggatta tggtagctct ccatcgcctg atagatcacc tgggccagct
    17161 cattattact ggacgggtca tagcacagca aatattcggt atcaggtagc ggcggtaagc
    17221 catctactcc actcagcaca cgcaggtccg ggctcatcat ctcaaccggc cttgccgtca
    17281 cgccaagacc ggctttcact gccgcacgaa cggccggaag cgtcgaggcg acataagcca
    17341 gtcgccatgg aatatctgct ttattaagcg ttgccagcac catatcgcga aacggacttg
    17401 gatcatccag caatacaaga gggatcggct cgcctttttg caatacgtat tccgctgcgc
    17461 agtaccagtg tgttggcgag gtacgcaggt tcaatgcctt aaacgctgaa ggacgatggg
    17521 tggttaccat caaatccact tcctgggatt ccagcatttc tgccatatag gcattacgtt
    17581 taacgcggac atccagcgct aatttcggat aaaccgaact cacgcgattt aacaggaaag
    17641 gtaagatcgt atcggcagat tcatctgaag caccgatagt taacacgccc tgaagattac
    17701 tgaacattaa tgatgagcag gcctcatcat taaaacgcag gattttcctg gcgtaaccaa
    17761 gaagttgaat gccatgttca gttaacagtt tgttgcgacc gtgacgagcg aacagttctt
    17821 tcccaacgag ttgttccaga cgctgcattt gctgacttac ggcggactga gtacgacaca
    17881 cagcggcagc tgcggcagca aaagtgttca gatcggcaac agcaacaaat gttctcagca
    17941 gatcgaggtc gaggttaatt atcggacgat ttgcacttat catatattat cacttactgg
    18001 cggctcatac tgagctggtt aatgctgtgc acacacaaac aagcaattcc atttgtaatg
    18061 tgcctccctg gcagtttcat ccggaacccg gacgaaagta aaaatgcata tgagttgcac
    18121 taaaaaagcg actcacattg ttccgttata atgcctgaag tagatcacag aatatatctt
    18181 cagggatcgc atatctatta agttactcac tcttttctat ttatgacatg cgcgtgtttg
    18241 tataaatgta aatgtgagtc cttgttccac tctcgtgcag catcgctggt catacgcgaa
    18301 cacgtacaaa cagcaatggt gaggcggcat caagagcagg gatccgtcat ttatgcgagc
    18361 attttacccc aaaaaccttt tatttataag ggccattgcg aatcatctga tgcaaagtta
    18421 tgttatgtta ggcaaagtaa tcttctatta ttaataagca catcaaaacc tttttgaata
    18481 ttaaataata attaattagc atcatcctca ttcattaatt ccgcttaaca atagtttcac
    18541 accttgcccc attacgacac ctcggaaatc atcacgctgt taaactctcc gtaatgcgga
    18601 aatatcatca tcgcgtttca ttagtgaatt cttaaatgag gcattttcac acaattatct
    18661 tacagataaa aaaaccagac ttacaattaa gaatcagaac aattcactat ataacattgc
    18721 atgtaaagca tatacacctc attattttgt catcattaag ttattaacag cacaatcgag
    18781 ccttcccctc tggcaaaatc ttattctgca gaccttcaaa acaccgtcct gggggagtac
    18841 attgttctaa gctgacttcc acggcaggga gtggcgataa cagcaaaaaa ggtcaagatt
    18901 catgtccccc attgaaaaat ccagcaaatt agagaatgtc tgttatgaca tccgtggtcc
    18961 ggtgctgaaa gaagcaaaac gcctggaaga agaaggtaac aaggtactga aactgaacat
    19021 cggcaaccca gccccgttcg gttttgacgc gccagatgaa atcctcgttg acgtgatacg
    19081 caacctgcct accgctcaag ggtattgcga ttccaaaggt ctttactccg cgcgtaaagc
    19141 catcatgcag cactaccagg ctcgtggcat gcgtgatgtt accgtggaag atatttacat
    19201 cggcaatggt gtatcggagc ttatcgttca ggcaatgcag gcattgctga acagcgggga
    19261 cgaaatgttg gttcctgcac cagattaccc actatggacc gcggcggttt cgctttccag
    19321 cggtaaagcg gtgcattatc tttgcgatga atcctctgac tggttcccgg acctcgatga
    19381 tattcgcgct aaaattacgc ctcgtacgcg tgggatcgtt attatcaacc caaataaccc
    19441 aaccggcgcg gtatattcca aagagctttt aatggagatt gtggagattg cacgtcagca
    19501 taatctcatt atcttcgccg atgaaattta tgacaaaatt ctttacgacg acgctgagca
    19561 tcactcaatt gcgccgctgg cacctgacct gctgaccatt acctttaacg gactgtcgaa
    19621 aacgtaccgc gttgcaggct tccgtcaggg gtggatggtg ttgaacgggc cgaaaaaaca
    19681 cgccaaaggc tacatcgaag gtctggaaat gctggcttca atgcgcctgt gtgctaacgt
    19741 tcctgcgcaa cacgccattc agaccgcgct gggtggttat cagagcatca gtgaatttat
    19801 tacccctggc ggtcgtcttt atgagcagcg taaccgcgcg tgggaactga tcaacgatat
    19861 tccgggcgtt tcctgcgtga aacctcgtgg tgcgctgtat atgttcccga aaatcgacgc
    19921 caaacgcttt aacattcacg acgatcagaa aatggtgctg gatttcctgt tgcaggaaaa
    19981 agttctgttg gtgcaaggga cggcattcaa ctggccgtgg ccggatcact tccgcattgt
    20041 cacgctaccg cgtgtcgatg atatcgagct gtctttgagc aagttcgcgc gtttcctttc
    20101 tggttatcat cagctgtaat cttaatttca ctgccggaga ttgcatccgg cagcgttatc
    20161 ccgccacaat gacctgatga tgtcatcata cgtaaggtca ctatgaaaca gagccatttt
    20221 tttgcccatc tctcccgcct gaaactcatt aaccgctggc cgctaatgcg caacgtgctg
    20281 acggaaaatg tgtccgaaca cagtttgcag gtagcgatgg tcgcccattc gctggcagct
    20341 atcaaaaatc gaaaatttgg cggtaatgtc aacgccgaac gtatcgcttt actggcgatg
    20401 taccacgatg cctcagaagt gccaccggcg atctccctac tccggtgaaa tacttcaatt
    20461 cgcaaatcgc tcaggagtac aaggctattg aaaaaatcgc tcagcaaaaa ctggtcgata
    20521 tggttccgga agagctgcgg gatatctttg cgccgttaat tgacgagcat gcatatagcg
    20581 atgaagaaaa atcgctggtg aaacaggcag atgcactgtg tgcatatctg aaatgtctgg
    20641 aagaactcgc ggccggaaat aatgaattct tgctggcaaa aacgcgactg gaagcgacgc
    20701 ttgaagcgcg tcgcagccag gagatggact acttcatgga agtatttgtt cccagcttcc
    20761 atctttcgct cgatgagatt agccaggatt caccgctgta agcagccgga gtctgcgtcg
    20821 catcaggcaa taagcgccgg atgcgacatc aggctcttgt caaaacggaa acagcatcgg
    20881 gatcatcacc acacaaaccg ccatcacgat aatggtgaac ggtaccccca acttcacaaa
    20941 gtcactgaag ctgtaatttc ccggacctaa aaccagtgtg ttaacaggtg aagaaaccgg
    21001 tgtcataaag gcggcggatg ctgccatcgc cacgaccatc gcgaatggat aaggcgacac
    21061 ccccatcgtt ttggcagcag ccagcgcaat cggagccatc aacaccgccg tcgcggtatt
    21121 agagataaat agcccaataa ccgccgacaa gacaaacaaa caccccagca tcatatgtgg
    21181 cccgtaacca ccgccaatgt ccatcagccc tttcaccgcc agcgcgacac ctcccgtttt
    21241 ctgtaatgcc acagcaaacg gcatcatccc aacgatcaaa ataatgctcg gccagtgaat
    21301 ggatttatag gcgctttcag catctataca gcggaatttc cccatcagca ggcaggcgat
    21361 gatagcggca acaggattag gaatttcatc tgtcagcatt aacgccacca ttagcaccag
    21421 acagaaaatg gcatggggtg cctggctgtg cgcgggcgat acttcactca cctcttccgg
    21481 taagttcagc gctacgaagt cgcggccctg tttggccagc ataccgatca gtttccagtt
    21541 acccacaacc aggatgatat cgcccagcag cagaggctca tccgccagcg aaccttccag
    21601 cgccacgcca ttgcgcttta gccccaccac attcagtccg tagcgggtac gaaaaccaat
    21661 ttcgcgcacc gatttaccaa tcagttctga ctcaggaatt aatgaaatct ctgccatgcc
    21721 cacatcaagg gcctggtcag aaaaatactc gccgcgcagt accatcggct ccagcaattg
    21781 ctcactacaa aattgccgga gatcgacatc agccgcagac atatcaataa gcaaaacgtc
    21841 acgcgcgcga aattcagaaa ccccattaac gttcacgata acgcgacgaa aacgccgcca
    21901 gcgttcaaca ccgatgacgt tagcgccata acgctcacgt aatttgagat catccagccg
    21961 ttgaccaatc attggcgatc cggggcgaat agccagacgt cgcgcacgcc cggtcagtcg
    22021 atattcacgg ataagatcgc gaaaggttcg acgcgtccag ccttcgcgct gcggggtctg
    22081 ggtatcccct ttcagcatga aacgcatcac taacatatac aaaataccca gcaccagcac
    22141 gaccaggcca acaggtgtta cgctaaagaa actgaagccg tgatagcctt cacgcagcaa
    22201 ttcactgttg actaccaggt tcggcggcgt cgccaccagc gtcatcatgc cgctaatcag
    22261 cccggcaaaa cttaacggca tcatcagacg tgacggcgaa gtttgcatac gcatggcaac
    22321 gcttaacacc acgggaataa agatagcgac aacgccggtt gaactcataa acgcgccaag
    22381 ccccgcgacg gtcagcatca acaaaaccaa cattttgatt tcactgttgc ccgccacttt
    22441 gaccagccat gttcccatta cggtggcaac accggtacgg accaaaccat cgccaataat
    22501 aaacaaggcg gcaatcagga caacgttagg atcagaaaag ccggaaaata cttcggggac
    22561 cgtcagcgtt ccgcttaatg caaacgcgac aataacaaac aaagcgaccg catccatacg
    22621 cactctgccc gtcgcaaaca agacgatggc aacggccagt aatgaaagaa cccaaatcaa
    22681 ttcaccgttc acaacttatc cttgttaatt gagggggatg acttgattct gccataaaaa
    22741 agccccgacg agacggggct aaatcat
//
LOCUS       DAJVUY010000061        22656 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.061, whole genome shotgun sequence.
ACCESSION   DAJVUY010000061 DAJVUY010000000
VERSION     DAJVUY010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22656
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.061"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..258)
                     /locus_tag="OQQ72_002053"
     CDS             complement(<1..258)
                     /locus_tag="OQQ72_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS2011788.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDCI"
     gene            complement(249..719)
                     /locus_tag="OQQ72_002054"
     CDS             complement(249..719)
                     /locus_tag="OQQ72_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS2011789.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(904..1698)
                     /gene="thyA"
                     /locus_tag="OQQ72_002055"
     CDS             complement(904..1698)
                     /gene="thyA"
                     /locus_tag="OQQ72_002055"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCS2011790.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYAPHPGIKAPVAI"
     gene            complement(1705..2580)
                     /gene="lgt"
                     /locus_tag="OQQ72_002056"
     CDS             complement(1705..2580)
                     /gene="lgt"
                     /locus_tag="OQQ72_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCS2011791.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(2731..4977)
                     /gene="ptsP"
                     /locus_tag="OQQ72_002057"
     CDS             complement(2731..4977)
                     /gene="ptsP"
                     /locus_tag="OQQ72_002057"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS2011792.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGLPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPILLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(4990..5520)
                     /gene="rppH"
                     /locus_tag="OQQ72_002058"
     CDS             complement(4990..5520)
                     /gene="rppH"
                     /locus_tag="OQQ72_002058"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HCS2011793.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            6205..6894
                     /gene="mutH"
                     /locus_tag="OQQ72_002059"
     CDS             6205..6894
                     /gene="mutH"
                     /locus_tag="OQQ72_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HCS2011794.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            6963..7676
                     /locus_tag="OQQ72_002060"
     CDS             6963..7676
                     /locus_tag="OQQ72_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS2011795.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            7814..8032
                     /gene="ygdR"
                     /locus_tag="OQQ72_002061"
     CDS             7814..8032
                     /gene="ygdR"
                     /locus_tag="OQQ72_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HCS2011796.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            8140..9180
                     /locus_tag="OQQ72_002062"
     CDS             8140..9180
                     /locus_tag="OQQ72_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HCS2011797.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKTAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(9212..10405)
                     /gene="lplT"
                     /locus_tag="OQQ72_002063"
     CDS             complement(9212..10405)
                     /gene="lplT"
                     /locus_tag="OQQ72_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HCS2011798.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNSTPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(10398..12557)
                     /gene="aas"
                     /locus_tag="OQQ72_002064"
     CDS             complement(10398..12557)
                     /gene="aas"
                     /locus_tag="OQQ72_002064"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HCS2011799.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTLDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE"
     gene            12946..13977
                     /gene="galR"
                     /locus_tag="OQQ72_002065"
     CDS             12946..13977
                     /gene="galR"
                     /locus_tag="OQQ72_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HCS2011800.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(13984..15246)
                     /gene="lysA"
                     /locus_tag="OQQ72_002066"
     CDS             complement(13984..15246)
                     /gene="lysA"
                     /locus_tag="OQQ72_002066"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HCS2011801.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            15368..16303
                     /gene="lysR"
                     /locus_tag="OQQ72_002067"
     CDS             15368..16303
                     /gene="lysR"
                     /locus_tag="OQQ72_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HCS2011802.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(16290..16982)
                     /gene="ygeA"
                     /locus_tag="OQQ72_002068"
     CDS             complement(16290..16982)
                     /gene="ygeA"
                     /locus_tag="OQQ72_002068"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HCS2011803.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(17111..18526)
                     /gene="araE"
                     /locus_tag="OQQ72_002069"
                     /pseudo
     CDS             complement(17111..18526)
                     /gene="araE"
                     /locus_tag="OQQ72_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-proton symporter AraE"
     gene            complement(18841..19602)
                     /gene="kduD"
                     /locus_tag="OQQ72_002070"
     CDS             complement(18841..19602)
                     /gene="kduD"
                     /locus_tag="OQQ72_002070"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HCS2011804.1"
                     /translation="MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE
                     PTETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDAL
                     EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA
                     SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW
                     GLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR"
     gene            complement(19632..20468)
                     /gene="kduI"
                     /locus_tag="OQQ72_002071"
     CDS             complement(19632..20468)
                     /gene="kduI"
                     /locus_tag="OQQ72_002071"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HCS2011805.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH
                     MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
                     LR"
     gene            complement(20755..21936)
                     /locus_tag="OQQ72_002072"
     CDS             complement(20755..21936)
                     /locus_tag="OQQ72_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HCS2011806.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNALSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            22191..22589
                     /locus_tag="OQQ72_002073"
                     /pseudo
     CDS             22191..22589
                     /locus_tag="OQQ72_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
BASE COUNT         5809 a         6061 c         5457 g         5329 t
ORIGIN      
        1 gatacagtca ccctgtccga caatttccag cccttcgccg gtacagatgc catgacaata
       61 acccgccctc tggagatgct tcgcgacggt aaatacccgc agccagattt catcttccag
      121 cgccagctta cgggtgctcg ttaaactttc acgctgtaac gcaggcagaa agcgtgcagc
      181 ccccagcaac aatacgctac tgatcgccat agcaatcaac acttccagca gagaaaaacc
      241 ttgctctttt acaggcatcc ttctgtttct ccttgctgac aaagccggag tcttccccac
      301 ggcgaaacca ccagccacca ctcgcccgtt gagtttttga agcgaatatg cccggcccat
      361 gcggtattgc gcaggccaaa gaaagcaagc gaaggtgtca ggtcgctcat ttcgacttcg
      421 ggccagcgtg gcacaaagac caatggtgaa ctgccatgac aggtattggc cccagcagcg
      481 gaactcacaa ggcaccataa cgtcccctcc ctgataacgc tgatactgtg gtcgcggtta
      541 tgccagttgg catcttcacg taaatagagc aaatagtccc gcgcctggct ggcggtttgc
      601 catagccgtt gcgactgctg ccagtattgc cagccataga gtccacttgc gcttagcatg
      661 accaaaatca gcatcgcgac cagcgtttca atcagcgtat aaccacgttg tgttttcatg
      721 ccggcagtat ggagcgagga gaaaaaaaga cgagggccag tttctatttc ttcggcgcat
      781 cttccggact atttacgccg ttgcaggacg ttgcaaaatt tcgggaaggt gtctcgaaga
      841 atttaatgga gggtaaaaaa aaccgacgca cactagcgtc ggctctggca ggatgtttcg
      901 taattagata gccaccggcg ctttaatgcc cggatgcgga gcgtagcctt caatctcaaa
      961 atcttcgaaa cggtagtcga agatggattc gggtttacgt ttgataatca acttcggcag
     1021 cggacgcggt tcgcggctta attgcagatg agtttgatcc atatgattgc tgtacaggtg
     1081 cgtgtcgccc cccgtccaga caaaatcgcc cacttccaga tcacactgct gcgccatcat
     1141 atgcaccagt aacgcgtagc tggcaatgtt aaacggcagg ccgaggaaaa cgtcacagga
     1201 gcgctgataa agctggcaag agagtttgcc gtctgccaca tagaactgga agaacgcatg
     1261 gcacggtgcc agcgccattt tatccagttc gcctacgttc cacgctgaaa caataatgcg
     1321 gcgcgaatcc gggtcgtttt tcagctggtt cagtaccgta gtgatctggt caatatgacg
     1381 accatccggc gttggccagg cgcgccactg tttaccatac actggcccga ggtcgccgtt
     1441 ttcatcggcc cattcgtccc agatggtgac attgttttcg tgtagataag caatgttagt
     1501 gtcgccctgc agaaaccaca gcagttcatg gatgatggaa cgcaggtggc aacgtttagt
     1561 tgtcaccagc gggaatccat cctgcaggtt aaaacgcatc tgatgaccaa aaatggaaag
     1621 cgttccggtt ccggtacggt cgtttttctg tgtgccttcg tcgagcactt tttgcatcag
     1681 ttctaaatac tgtttcatgg ttcctcagga aacgtgttgc tgtgggctgc gacgatatgc
     1741 ccagaccatc atgatcacac ccgcgacaat catcgggatg gaaagaattt gtcccatgct
     1801 gatgtactgc acccaggcac cagtaaactg cgcgtcgggc tggcggaaaa actcaacaat
     1861 gatgcgaaac gcgccgtaac caatcaggaa caaacctgag acagctccca ttgggcgcgg
     1921 tttacgaata tacaggttga ggataataaa cagcactaca ccttccagca acagctcgta
     1981 aagctgtgat gggtggcgcg gcagcacacc gtaagtatcg aaaatggatt gccactgcgg
     2041 gttggtttgc agcagcaaaa tatcttctgt acgggagcca gggaacagca tggcaaacgg
     2101 gaagttcggg tcaacgcggc cccacaattc accgttaata aagttgccca gacgcccggc
     2161 accaagacca aacggaatga gtggtgcgat aaaatcagag acctggaaga aggaacgttt
     2221 agtacggcgg gcgaagataa tcatcaccac gataacgcca atcaggccgc cgtggaagga
     2281 catgccgccg tcccagacac ggaacagata cagcggatcg gccataaact gcgggaagtt
     2341 gtagaacaga acataaccaa tacgtccacc gaggaagacg ccgaggaagc ccgcatagag
     2401 taagttttca acttcatttt tggtccagcc actgcccgga cgattcgccc gacgtgttgc
     2461 cagccacatt gcaaaaatga aacccaccag atacatcagg ccgtaccagt gaagcgccac
     2521 gggtcctatt gagaaaatga ccggatcaaa ctccggaaaa tgcagatagc tactggtcat
     2581 ctgtcaccac aagttcttgt tatttcgctg aaagagaaca gcgattgaaa tgcgcgccgc
     2641 aggtttcagg cgctccaaag gtgcgaataa tagcacaagg ggacctggct ggttgccgga
     2701 taccgttaaa agatatgtat atgatccgcg ctataaccct ccgcgaatca gcccgcccat
     2761 gccgcgacgc tccataaagg ctgcaacctg atgacgaact tcggtcgcca gttgcgcttc
     2821 cagactacgc tgcgcaagat tttctgcttc ggcaaaatca atgcgccgca gcaggtattt
     2881 tacccgcgct acagaacgtc cgttcataga cagatggcga tacccaagcc caatgaggat
     2941 tgccacgcac atgggatcgc ccgccatttc accgcacaaa cggagatcga taccatgtat
     3001 ttccgcttcc cgggcgatca ttgccagagc tcgtaacatt gcaggatgaa ggctgtcata
     3061 aatgttcgcc acccgggtat tgttgcgatc aacggccaga atgtattgag tcagatcgtt
     3121 ggtgccaaca gagatgaaat cgacccgctt tgccagatgc ggcagcataa ataccattga
     3181 cggtacttcc agcatgatgc cgatacgtgg tttgggaatt tcgtaaccga tcatctcctc
     3241 gacttcacgt ccggcacgtt caatcaggcg gcgtgcttcg tcaacttcat cgaggctggt
     3301 gaccatcggc aacagaatat tcaggttgcc cgtagcggca ttagcacgca gcatcgcccg
     3361 cacctggatc aagaagatct ccggctgatc gagcgtaatg cgaatcccac gccaacccag
     3421 gcatggattc tcttcgctga tcggcatgta aggcagctgc ttatctgctc cgacatccag
     3481 cgtacgcaag gtgacgggtt tatcattgaa catttgcagc atcccctgat actgcgccac
     3541 ctgttcttct tccgacggga aaccactttg cagcatgaat gggatttcag tgcgataaag
     3601 accgatgcca tcaatacggc tgcccagttt ttcttcatgt tccgggctta aaccagcatt
     3661 gagcatgact tttatacgct caccgctttt taactgcgcg ggtaaattga cgtcatcttc
     3721 cgccagacgg ctaagctcaa tctcttcact aattagccgc tgatattctt gcagcagtat
     3781 cggctccgga tcgaccagca attcaccgcg atagccatca acgatcagcg tcctacgatg
     3841 cagcaccgaa ggctgaatat ccgcgcccat cacggtaggg agccccagcg cacgtaccat
     3901 gatcgcagca tgggagttgg ctgcgccatc tcgcacgaca acaccgacta agcgatcctg
     3961 gggcagctca gcaagagttg tcgctgacag ttcatctgcc accagaatga aacgttccgg
     4021 ccaggcgttc ggcccttgat tagcgtcatc aagatgaaac agcaatcgct gacccagcgc
     4081 acgtaaatcg ccagcccgct ctttgagata gttatcgctt agcgcggcaa actgttcggc
     4141 aaatttttca atgaccgttt ttaccgccca ctctgccacc gagcctttat caacctcggc
     4201 aaacaattcg cgacgcagcc gggtgtccga aagcaggtgc gagtaaagat cgaaaatagc
     4261 cgccgtttct ttttgtgctc cggcggcaaa gcgtttgctg tagcggcgaa actcgtttgc
     4321 cgcttcttcc agcgccccgg tcaatcgttc gcgttccaga gccggatcca gcgttgatgc
     4381 ctgatacacc tgttccatta aaggtaacgt ggcatcctgc cagccttcgg caatcgccac
     4441 accaggtgct gccggtaatg cgcggattcg cgtctggcga tattgcccaa acaaggcagt
     4501 caactgcgac tgagaaagaa tagctgccat ctgggtggca agcgtcacca ggaaggattc
     4561 ttcactttcg tcatactggc gcaactctcg ttgctgtacc accagtacac caagcaactg
     4621 gcgacgttga ataattggta cgcctaaaaa cgcgcggaaa cgttcttctt ttacggaggg
     4681 gatgtatttg aagctggggt gcttttgcgc atctgcaagg tttatcggtt ccgccagcct
     4741 gccaaccagg ccgacgatcc cttcatcaaa cgcgagcgtt acagtgcgac cgcgtggttt
     4801 tttcagcccc cgggtcgcca tcaggtagta acaacgtcga tcatgatcgg ccaggtagac
     4861 cgaacagacc tcggtatcca tcgcaagaca gatgtcggta accagaatat ttaacgcctc
     4921 attcaggcgt ggtgcgctgg ctaccttttc gactatttcg cgcaggcgag tgagcataat
     4981 tggcgtgact taacctcttt tacgtcgata agcagatgtg ttttgtggtt ttggcgtatt
     5041 ttcctgcagt gacatcacca cactcgcgaa ctctttcatt accctacggt agacatcacg
     5101 tttaaatgac accacctgtc tgaccggata ccagtaactt acccatcgcc agccgtcaaa
     5161 ctctggtgta ctgctggttt gcatattgat ttctgcatcg ccgctcacca gctgcaagag
     5221 aaaccatttt tgtttttggc cgatacaaac cggcttcgtg tcccaacgca ccaaacgttt
     5281 cggtaatttg tagcgcaacc agttacgcgt tgaagcaagg attcgaacgt ctttgcggct
     5341 taatcctact tcttcaaaca attcacggta catcgcctgc tctgcggatt ctccggggtt
     5401 gattccgcct tgcggaaatt gccaggagtg ctgaccaaat cgccgggccc acattacctg
     5461 cccctggcga ttacaaatca cgatacctac gtttgggcgg tagccatcgt catcaatcac
     5521 cggactacct caaaataaag ctttatatac gaatgattgt ttcatactcc aggaagacgg
     5581 taaaccactc tctgcagggc attacacact aataacaatt gaataactca cagttatgtg
     5641 cagagttata aacagaggaa ggggtggata gccgttttta ttcacctttt ctgtggatag
     5701 agttgtgaag aactacggaa ttactacggg aaaacccgga gcattctgaa taagcccgat
     5761 ataggcattt taaaatattc attataagtc aatgcattac atgtaatttg agtaatgaaa
     5821 aagagtaatt cgtgacccag gtcacacctc tcatttacgg gttggcgaaa gatcaaccaa
     5881 tgccgtattt atccacagaa tgtgccacta agttaagcac tgaaccacta aaaactggag
     5941 tttcgtcgca cgtcaaggct gtaaatggaa acagtagtgg aggtttttca cagttatccc
     6001 agctttctgt ggataacatg gtgtaagatc ctgtttattt tcagtgacca gatttggaaa
     6061 acctattgca gtgctgcgca actcgattat cggcagccta aaaagcaata taaatcagag
     6121 aattgaacaa cacatgtgga aaaagttaca ctgcgaatat tcggtacata attgctgttt
     6181 gttttttaac caaggtatca tgacatgtcc caacctcgcc cactgctctc tcctcccgaa
     6241 actgaagaac agttgttagc gcaagcacag caactttctg gttatacatt gggagaactg
     6301 gcggcacttg ccgggctggt tacgccagag aatttaaaac gcgataaggg ctggattggc
     6361 gtgttactgg agatctggct aggtgccagc gcagggagta aacctgagca agattttgct
     6421 gctctgggcg tggaacttaa aactatccct gtggatagtc ttggtcgtcc gctggaaaca
     6481 acattcgttt gtgttgcccc gttaacgggt aatagcgggg tgacctggga aaccagccac
     6541 gtgcgccaca agctcaaacg cgtactgtgg ataccggttg aaggcgagcg cagcatcccg
     6601 ctggcgcagc gtcgcgtagg atccccgttg ctgtggaccc cgaatgaaga ggaagaccga
     6661 cagctacgcg aagactggga agaattaatg gatatgattg ttctcggtca ggttgagcgg
     6721 atcaccgctc gtcacgggga atatttacag ataagaccga aagcagcgaa tgcgaaagcg
     6781 cttaccgaag ccattggtgc ccggggcgaa cggattctga cgctgccacg cggcttttat
     6841 ttgaagaaga atttcaccag tgcactactg gcccgtcatt ttctgatcca gtagccatcg
     6901 ctttgacctg ccgctttccg ggcatataat taccgcttca tttttttggc agggcttttt
     6961 agatgttatt tgcatggata accgatccta acgcctggct tgcgctcggt acgctgacgc
     7021 tgctggagat cgttcttggg atcgacaata ttattttcct ttctctggtg gtggcaaagc
     7081 ttcccacagc acaacgtgct catgcgcgcc gtctggggtt ggcgggagcc atggttatgc
     7141 gtctggcgct gctggcatca atcgcctggg ttacgcgcct gacaaatccg ctttttacaa
     7201 tattcagtca ggaaatttct gcccgtgatt tgattctgct tctgggtggc ttgttcctta
     7261 tctggaaagc cagcaaggaa atccacgaat ccattgaagg tgaagaagaa gggctgaaaa
     7321 cacgcgtttc atcattcctc ggcgctatcg tgcagattat gctgctggat attatcttta
     7381 gcctcgactc ggtgattacg gctgtgggtc tgtcagatca cctgtttatt atgatggcag
     7441 ccgtggtgat tgccgtaggc gtgatgatgt tcgccgcgcg ctcgattggt gattttgtcg
     7501 aacgccatcc ttcggtaaaa atgctggcgc tctctttcct gattctggtg ggctttaccc
     7561 tgattctgga aagtttcgac atccacgtac cgaaaggtta catctacttc gcgatgttct
     7621 tctctattgc ggttgaaagc ctcaacttga ttcgcaacaa aaagaatccg ctctgatact
     7681 ccgtacgctc tcctgcggga gggcgtactc actcctttta ccctcacagt ttaagatttt
     7741 cctgctttca agatatataa cgtcgtttta taaacagact attatcatag gtaggccaaa
     7801 tgaggataac cggatgaaaa aatgggcagt aataatttct gcagtcggac tggcgtttgc
     7861 tgtttccggg tgttccagtg attacgtcat ggcgaccaaa gatggccgta tgattttgac
     7921 cgatggaaaa cctgaaattg atgatgatac cgggctggtg agttatcacg atcagcaagg
     7981 taacgcgatg caaattaacc gtgatgatgt ttcgcaaatt attgaacgtt aacaaataag
     8041 gtcagcatcc ggctggcctt aagatttttc tctttccctt ttcccttccc tctgccattt
     8101 ttatattcct tatgtcgtga ttataaaaag gaaacggcta tgcaatatca ccgtataccc
     8161 cacagttcgc tggaagtcag cacgctgggg cttggcacga tgacgtttgg tgaacagaac
     8221 agcgaagccg acgcccacgc acaactcgac tatgccgtcg ctcagggcat taaccttatc
     8281 gacgttgccg aaatgtaccc agtacctccg cgccccgaaa cgcaagggtt aaccgaaacc
     8341 tacgtcggca actggctggc gaaacatggc agccgcgaaa agttaattat cgcctccaaa
     8401 gtgagcggac cgtcgcgcaa taatgacaag ggcatccgcc cggatcaggc gctggatcgg
     8461 aagaatatcc gcgaagcgct gcatgacagc ctcaagcgcc tacagactga ttacctcgat
     8521 ctttatcagg tgcactggcc gcagcgcccg accaactgct tcggcaaact cggttatagc
     8581 tggacggatt ctgcgcctgc ggtttcgctg ctggatacgc tggacgcact ggcagagtac
     8641 caacgcgcgg gaaaaattcg ttatatcggc gtgtcgaacg aaactgcatt tggcgtaatg
     8701 cgctacctgc atctggcgga caaacacgat ctgccgagta ttgtcaccat tcagaaccct
     8761 tacagtctgt taaaccgcag ttttgaagta ggtctggcag aagtcagcca gtatgaaggg
     8821 gtcgaactgc tggcctattc atgcctgggt ttcggcacgc tgaccgggaa atatctcaat
     8881 ggtgcaaaaa ccgctggcgc acgtaatacg ctctttagtc ggttcacccg ctatagcggt
     8941 gagcaaacgc aaaaagccgt cgcggcgtat gttgatatcg ccagacgtca tggcctggac
     9001 cctgctcaga tggcgctcgc gtttgtacgc cgtcaaccgt ttgttgccag cactctgctg
     9061 ggcgcaacca cgatggatca gctgaaaact aacatcgaaa gtttgcatct ggagttaagc
     9121 gaagacgtat tagctgaaat tgaagcggtg catcaggttt atacttatcc ggcaccataa
     9181 gattaacgcc ggttaaaacc ggcgttaaat attaatgacg gcgctgccag atccacagcg
     9241 ccgttattgc cagcgcaaac agcgcaccga agccaatgcc aatgggcacg accgggatgc
     9301 ctaccattac cgccagcgag taaatgccca gcatcaacaa catggcgctg ttttcgccaa
     9361 ggttttgtac tgcaatcgca ttccccgccc cgacgctttt tttaccccgc tcctgtagca
     9421 acgcattgag cggaacgaca aaaaagcccc ccatcacgcc aatcagcatc aacaaggcat
     9481 aggctggcag cagctcgtgt tgcagggaaa aaatcagtac caccacgcca atcaaaatcc
     9541 cggctggcat acagcgtgac acggtttcca gcgtaactaa cttcgctgcc gcacctgcgc
     9601 caaccacgat accaatcgct accatcgcgt tgagataggt gggcgtagag ttatcggtaa
     9661 tgcccagcgc caccggtacc cacagcacca acaggaaacg cagcgtgaca cccgctcccc
     9721 agaataaact ggtgcccacc agcgaaaaac gcgtttcacc attgcgccat agcgaggtgc
     9781 aggcattcag gaaactgcgg gtcatgttga tgagattcca agactgcccc ggacgcgccg
     9841 ccgccagttt gggaatgtag atattggcaa cgaccgcacc accgtaggcc agtgcgcatg
     9901 cggccagggc gacgaggaca tgccagtcag ccagcacacc accggctacg gaaccgagca
     9961 aaatcgccgc tatggtagaa gcttccatta aaccgttagc tttcactaac ttactacccg
    10021 tggttaattc gccgagaata ccgtatttcg ccggtgaata ggctgcagca ccaaccccca
    10081 ccagcgtata gccgagaaac ggattgatac caaagcagat actggctgcg cccagcagct
    10141 tcaggccgtt ggcaaacatc atcacccggc ctttggcgaa gctatccgcc acctgcccga
    10201 caaacggcgc aaaaagaatg taagcaccta caaacaccat ttgcaggatg ggctggctcc
    10261 actccggata gaactgcgct ttcagtaacg ccagagtggc aaacagtagg gcattatcgc
    10321 caaacgcaga gagaaactgc gccacgataa ccgctttcat ccccttcgac cacaacgaag
    10381 tgttagtgtg cactgactca ctcatcgtgt tgttccgctt cgtctaccca gcttttcaac
    10441 gtgacaaagt caggtttgcc gctgccaagt aatggcatct gtttcagata gcgaatatcg
    10501 cgcggtacag caagctccgg cacgccgtgc tcgcgggcat actgttgcaa cttatcgagc
    10561 gtcagttcgt tatctgtggt gaaaagcacc agtgcctcgc ctttgctggc atcgctctta
    10621 atcgcagtgg catggacttt atctggcgaa acaccaagtg ccagttgttc caccatttcc
    10681 agcgacacca tttcgcctgc aattttggca aagcgttttg cgcggccctg aatctgcaca
    10741 aagccctgct cgtcaaaacg cacaatatcg ccagtgtcat accagccgcg ctccatttcg
    10801 ccgcgaacat tctcggcggt gggcacttcc agtacacctg gcttctccac ccgcagatag
    10861 ccgttcatta tgttcggccc tttcagttgc aggcgtccgc cctcttcgat accaggaacc
    10921 gacaacaggc gcgcatccat tcctggtaga atacgcccta ccgtaccggg tttcgccgcc
    10981 atcggtacgt tgatagaaac gacaggcgcg cactcggtta caccatagcc ttcaaggatg
    11041 cgcaggccaa atttatcctg ccaaagctgt ttggtacttt cttgtagttt ttctgcgcct
    11101 gccaccacat agcgtagacg atagaagtca tacgggttgg cgaaacgcgc gtagtgaccg
    11161 aggaaagtcg aggtaccgaa caacacggtg caactgcggt catacaccaa ctccggcaca
    11221 atgcggtaat gcagcgggct tggataaagg aacacttctg cacctgtaag cagtggcgta
    11281 aacaggccta ccgtcagccc aaaggagtga aacagcggta atgccgacat aaagcgatcg
    11341 ttggtggtga agtcggcaat cgttttaatc tgctcgacgt tcgccagaat gcttttatgg
    11401 ctatggacga cgccttttgg atggccttca gaaccggagg taaagaggat cagcgcctct
    11461 tcttccggct gctgttttac ctgcgccagg cgcggcatca gcaaatgagc gaagatccat
    11521 actttgtcgg cagtggtgac atctgctttt aaatcttcca gatagaccca gcgcacctga
    11581 gtaagttgct ccggcagatg ccagagtttg cctttatcga gaaactggcg ggaagtgaag
    11641 atggttttga tttcagccgc cgtaatagca ctggtcagcc cttttacccc agcagtgtag
    11701 ttcatcattg cgggaatgcg gcgacgcgcg atggccccaa aaatcactgc cgcactgatg
    11761 cctgcattgg gcagcattaa gccgatgcgt tcgccttcaa cactgtattt ttcaaggatg
    11821 cgtccaacaa acagcgtttt cgtaagcaat ttgcgatagg agtctggggt aaagttgacg
    11881 tcttcgacac atttcttccc ggctccgaag cggtacattg cactcagtaa agattcgtac
    11941 agagtttcac gcgggcgcac cgccatacgc gcttccatca ttatttgatg cagcatttcg
    12001 ccagcgattt tgcgacggtc acgggcacgc gacgcatccg gcatcgccac ctgcgttgga
    12061 ggcaaaatat gcagagtaat ttgcgggaac aagcgacgtt taaccagacc tttcaggcgg
    12121 ctgaagtgcg taagttccgc cccttcaata cgcacaggaa taaccgttgc accagacttc
    12181 gccgcgacaa aacccgcgcc atcgtagatt ttcatcagcg agcctgtagt ggtgatgcgt
    12241 ccttcaggga aaatcaccac tggtcggccc tgttccacca gacgtaccag atgtttaata
    12301 gccataggtt gcgtcgggtc gagaggaaca aagtcgataa atgatttcag ccaacgcata
    12361 taccactgtt ggcttattga ggtgtaaacg gcaaacactg gacgcacagg taaaaacagt
    12421 ccaagcaaaa tgccatcaat aaaagagacg tgattaggcg taattagaac gcgctcgccc
    12481 ttcagtgcct gggtgtcacc cgtaacgcga acgcgataca aaacacggca caaatttcga
    12541 aaaaagctaa aaagcattcc aactcccttt gctctgattc agtaaaagcg aatggaggga
    12601 gattacacga gataaagaac gcgagcgaca gtaaattagg tgcgaaaaaa aacctgcgca
    12661 tccgcgcagg ttggtgcaag agacagggta cgaagagcgt accgaataat ctcaccaatc
    12721 aatacctctg ggatcaccac tttagcaacc tgaagccaaa cgccaccagc ggtcaatcgc
    12781 aacagcgttt cgcaaagtgt aaccaaaggt ttgcaatctc tttttttgtc ttacttattt
    12841 gcgtttggct cacattccca cgatgaaaac acgccactcc ttgaaccaac gggcgttttc
    12901 cgtaacactg aaagaatgta agcgtttacc cactaaggta ttttcatggc gaccataaag
    12961 gatgtagccc gactggcagg cgtttcagtc gccaccgttt cccgcgtcat taataattca
    13021 cccaaagcca gcgaagcttc ccggctggct gtgcatagtg caatggagtc tcttagctat
    13081 cacccgaacg ccaacgcccg tgcgctggcg cagcagacca ctgaaacggt cggtctgatc
    13141 gttggtgatg tttccgatcc gtttttcggt gcaatggtga aagcggtcga acaggtggct
    13201 tatcacaccg gtaatttctt attgattggc aacggttacc acaacgaaca aaaagagcgt
    13261 caggctattg agcaactgat ccgccatcgc tgtgctgcgt tggtcgtcca tgccaaaatg
    13321 atcccggatg ccgatttagc ctcattaatg aaacaaatgc ccggtatggt gctgatcaac
    13381 cgtatcctgc ctggctttga aaaccgttgt attgctcttg acgatcgtta cggtgcctgg
    13441 ctggcaacgc gtcatttaat tcagcaaggt catacccgca ttggttatct gtgctctaac
    13501 cactctattt ctgacgccga agatcgtctg caagggtatt acgatgccct tgctgaaagt
    13561 ggtattgcgg ccaatgaccg gctggtgaca tttggcgaac cagacgaaag cggcggcgaa
    13621 caggcaatga ccgagctttt gggacgagga agaaatttca ctgcggtagc ctgttataac
    13681 gattcaatgg cggcgggtgc gatgggcgtt ctcaatgata atggtattga tgtaccgggt
    13741 gagatttcgt taattggctt tgatgatgtg ctggtgtcac gctatgtgcg tccgcgcctg
    13801 accaccgtgc gttacccaat cgtgacgatg gcgacccagg ctgccgaact ggctttggcg
    13861 ctggcggata atcgccctct cccggaaatc actaatgtct ttagtccgac gctggtacgt
    13921 cgtcattcag tgtcaactcc gtcgctggag gcaagtcatc atgcaaccag cgactaaccg
    13981 cagttaaagc aattccagcg ccagtaattc ttcgatggtc tggcgacggc gaatcaaccg
    14041 cgcctgacca ttatcaaaca gaacttctgg taacagcgaa cggctattgt agttggatga
    14101 cattgatgcg ccatatgccc ctgtatcatg cagtaccaga taatcacctg ccttcacttc
    14161 cggcaaggcg cgggtttcaa catttccccc ttcctgctgg gtaaagacat cgcccgattc
    14221 acataacggt ccggcgacga cggtttccac cgttggcgcg tgttccagag aacgaccatc
    14281 agctgccagg gcactgatat ggtggtaact accgtacatt gccgggcgca tcagatcgtt
    14341 gaacccggca tcaaccagca caaagtggcg gctccccatt tgtttgacgc tccgcacctg
    14401 agtaattaat acgccagact gcgctaccag gaagcgaccc ggttcaattt ccagtttcac
    14461 agggtggccc aaatggcggg cgatttgctc acgcgcggca ttccacagac cataataatg
    14521 ttcggtatca accgcctctt caccctgttg ataaggaaca gaaagcccac cgcccgcaga
    14581 aatagcctgt aaatcctgac cgaattcgat gacctgacgc accatagcac cacacacctg
    14641 ttccagatgg gcataatcaa cgccagaacc aatgtgcatg tgaatgccga ccagctgcag
    14701 atgatgacgt tgtatcacgt ccagtgcggc gggcagatcg gtgtaccaga taccgtgctt
    14761 gctgttttcg ccaccggtat tggttttttg gctatgtccg tgaccaaacc ccggattaac
    14821 gcgcagccat acccgatgcc ctggcgaaac ctggcccagt tggtcgagca tatcaacaga
    14881 acccgcattc accggaattt gcaattcact gacgcgttca agcgtcgcct gatcgataac
    14941 atctgccgta aaaacaatat catcggggtg cgtttgcgga ttgtaacccg ccgccaacgc
    15001 acgctctatt tcgcctaacg agacggaatc cactttcacg ccctgctcac gcattaagcg
    15061 caaaatatga atattggaac aggctttctg tgcaaagcgc accacatcaa actgtttcag
    15121 cgctgcaatc tgccgacgaa taatttgcgc atcgtagacc cacaccgggc agccaaattc
    15181 agcgggcaaa cgcagcagat tttcggcggt gagatcggta tcggtgctga acagtgaatg
    15241 tggcataaca aactccagat aagtgctttt ttatgattac gccacatcat aaaaagaata
    15301 aaaaatatcg atttatgtcg agtctatgca aaaatgatat ggattaccgg attgcgagag
    15361 agcgctaatg gccgccgtta acttacgtca tattgaaatt tttcatgcgg taatgaccgc
    15421 cggaagcctg actgaggcgg cacacctgct acacacctca cagccaaccg tcagccgcga
    15481 acttgcgcgc tttgagaagg tgatcgggct gaaattgttt gagcgcgtac gtgggcgatt
    15541 acatcctacc gtgcaaggac tgcgtctgtt tgaagaagtg caacgatcct ggtacggact
    15601 ggatcgaatt gtcagcgctg cagaaagtct gcgcgagttt cgccagggag aactgtctat
    15661 tgcctgcctg ccggtctttt cgcaatcttt tttaccgcag ctcctgcaac cctttctggc
    15721 acgttatccc gatgtcagct taaatatcgt gccccaggaa tcaccgctac ttgaagagtg
    15781 gctctcggcc cagcgtcatg atttaggact cactgagaca ctccatacgc ctgcgggaac
    15841 agaacgtacc gaattactct ctttagatga agtgtgtgtg ttacctccgg gtcatccgct
    15901 ggcggtaaaa aaggtattaa cgccggatga ttttcagggt gagaactaca tcagcctttc
    15961 ccgtactgac agctatcgcc agttgctgga tcagctattt actgaacatc aggttaaacg
    16021 acgcatgatc gtagaaaccc acagcgccgc gtcaatctgc gcaatggtac gggcgggggt
    16081 aggtgtttcg gtggttaacc cgctcaccgc actggattat gcggcaagcg gtttagtggt
    16141 gcggcggttc agtattgcgg ttccgttcac agtcagcctg atccgccccc tgcaccgccc
    16201 gtcatcagcg ctggtgcagg cgtttagtga gcatttacaa gcggggttac cgaaactggt
    16261 cacttctctt gacgctattt tgtcgtcagc tacgacagca taaaagcgac agcatcctcg
    16321 gcatggatcg ccgcagtatc aaacacaggc aaaacactgc gctcttctgg caccagtaaa
    16381 ccaatttctg tgcagccaaa aatgacgccc tgtgcgccct gttctgcaag gcgagcaatc
    16441 acttgcgcat aataagcgcg tgacgcttcg gtaaattgcc ccagacacag ttcttcaaaa
    16501 ataatctgat taattttcgc ccgttcatcc gcttcaggaa taagacaatt gatggaaaat
    16561 tgttccgtca gccgcccgcg ataaaaatcc tgttccatgg tgtaacgcgt acccagcagc
    16621 gccacacgag tcattccggc cccggtaatt gcacgtccgg tggcatccgc aatgtgtaag
    16681 aaaggcagag tgcaacgtga ctcaatggca tccgccactt tatgcatcgt attggtacat
    16741 aacacaatac cttctgcgcc cgcccgctgt aagccaagcg ccgcctcagc cagaatgtcc
    16801 ccggttttat cccattcccc gcgacgctgg cactcttcta tttcatgaaa atcgacgcta
    16861 tgtagcagca cttgcgcaga gtgaagccca ccaagccgct gtttaatgcc ttcatttatc
    16921 aaacgatagt aaggaatggt ggattcccag ctcattcctc ccagcaaacc aattgttttc
    16981 attcctctct cctgatgtgt gttaccgcaa caaggctgaa taaggaacga gacaaacgcc
    17041 tcaacggcca agtgcccaat ctctattaac gaaaaaaggg ccggatgtac agcacatccg
    17101 gcccgtgaaa tcagatgccg atatttctca acttctcgcc tgccatcagt ttgcgttcga
    17161 tatgttccag cgtgacattt ttggtttccg gaatgagcca gaaagtgatg cccacaaacg
    17221 caatgttcag cgcagtgtag agccagaacg taccggcagc gccaatgctg tcgagcagcg
    17281 tcaggaaggt cgccgataat catattcgac acccagttcg tggtggtcga acaggtaata
    17341 ccgaaatcgc ggcatttcag cggctgaatt tcagagcaca ggatccacac cactggcgcg
    17401 gcgctcatcg cataaccggc aatacacatc atcgtcatgc caacagagag ccaggacaat
    17461 ccactggaag ccgtaccgtt atcaaactgc atcaggcaat agcccagcac cagagtgcct
    17521 aacgccatca cgctgaaacc aattttcaga gccggtttac ccctgcttta tctaccgtaa
    17581 acaccgcaat aaaggtggcg aacataaagg tcagccctac gaccagagtc gcaatcatct
    17641 gttgttctgt ggtcgtaaag cccgccattt tgaagatacg cggcgcgtag tacatgatga
    17701 tgttcatacc ggtaaactgc tgcatcgcct gcaacaacat accgagaaac acagcacgac
    17761 ggacgttacg gttgatctta aacagtgccc aaccgccctg ttttaacttc aggctttcac
    17821 gaatttcgtt gagttcttct cgcgcttttt ccgacgtatc gcgcagcata cgcaatactt
    17881 cttccgcctc aatatgacgc cccttttccg ccaaccagcg cgggctattt ggcaggaaga
    17941 ccaccagaat aatcagcaga actgctggta aagcaagaac ccccaacatt gcgcgccagt
    18001 taccgctata actgaacgct gtatcggata aaaacgccag cacgatgccg agtgtgacca
    18061 tcaactggta catactgatc atcttaccgc gaacgttttc acttgccatt tcagaaagat
    18121 acagaggagc ggtgtaagac gcgatcccga cagcaatgcc cagccccaca cgagcggcga
    18181 ttaacatctc tacgctggtc gcaaaagcgg accctataga accgagtaca aacaggatgg
    18241 cccccgccat caggctgtat ttacgcccca ggcggaacga cagccaacca ttaaacagcg
    18301 caccaattgc tgcgccgagc atcatgctac taaccaccca ttcctgcaaa tgactggtca
    18361 gcacaaagtg atcggtaatg aacggcaacg ctccggcgat tacgccgata tcaagaccaa
    18421 ataacaatcc tgcgaccgca gcagctaccg aaacaaacat attcatacgc cgcgtatccc
    18481 gcaaagaacg tggcgttaaa gcagattccg tattgatagt aaccattttt tcctgccagc
    18541 agagagtaag acatagtgaa aaaatacgtg aacaactcac gcaggtgtca ggtcggaaac
    18601 agcataaata tggattaaat tgctgcgaca tgtcgttatg tgatggatat tccaattttc
    18661 aaattaagtt gaattattga gattattatt aaccacctaa ttttacagca gataaaattc
    18721 ataaagttca ttaattgata attaatatgg attatttcat aaccatgata tggattatga
    18781 tgatctacag gtataaaaaa ccctgccatg cggcagggtc ataaaagtaa gaagaatgaa
    18841 ttaacgcgcc agccaaccgc catccacggc aatggtataa ccattcacat aatctgaagc
    18901 gctggaggca aggaacacta tcggccccat caggtcactc ggcagtcccc aacgaccagc
    18961 tggaatgcgg tcgagaattt ccgcgctacg ttgttcatct gcccgtagtt gttgagtatt
    19021 gttggtcgcc atgtaacccg gagctatcgc attaacatta atgttgtgtt tagcccattc
    19081 gttcgccatc aatcgcgtca cacccatcac gccgcttttt gatgcggtat aagaaggcac
    19141 acggatcccg ccctggaagg agagcattga cgcgatattg ataatcttgc cgccattgcc
    19201 ttgcgcgata aagtgtttcg ccgctgcctg agacatgaag aatacgctct tgatattcag
    19261 gttcatgaca tcgtcccagt ctttttcgct gaactcgaga gcgtcttcgc ggcgaatcaa
    19321 tccggcgtta ttcaccagga tatcaatatg accaaattca gctaccgcgc gatccagcag
    19381 tccaggaatg ccatcaatct ttcgcagatc ggcggtcagg cttaaaaaac gacgccccag
    19441 cgccgtgacc tgctcgatgg tttcagtcgg ttcaacgatg ttaatgccaa caatgtcaca
    19501 gcccgcttgc gccagcccca acgccatccc ctggcccagc ccagtatcac aaccagtgac
    19561 gaccgcaact ttaccttcga gagaaaatgc acttaaaatc ataacaatac cttattcgtt
    19621 tatgcccaca actagcgcaa atctttaacg gccacatggt ccatatcatc aaagacctgg
    19681 ttttcaccaa ccatgcccca gataaaggta taagctttgg ttccgacgcc ggaatggatc
    19741 gaccagctcg gggagatcac cgcctgctcg ttatgcatca caatgtgacg cgtttcttgc
    19801 ggttgcccca tcatgtggaa aacgcaggcg tcatcatcca tattgaaata gaaataaact
    19861 tccatccggc gctcgtgggt gtgacacggc atggtgttcc acaagttacc tggagccagc
    19921 tccgtcagcc ccatactcaa ttggcaggtt tccagcacat ccgggacaaa atatttgtta
    19981 atagtgcgac ggttactggt gaggttatcg cctaacgtga ctggagatac ttcgtccggg
    20041 gtgacttttt tggtgggata cgtcgtatgc gcgggtgcgc aattgtaata aaactttgcc
    20101 ggagtggcgg tatcaatact ggcaaagaca acttcttttg cacctttacc aacatacagg
    20161 gcgtcgcggt gacctatttc atagcattgg ccatcgacag taatcgtacc ggcaccgcca
    20221 atattgataa cacctaactc gcgacgttca aggaaatagc ttacgccgag ttgtttacca
    20281 acttccccgc caacggaaac cgttttagtt atcggcataa tgccgccaac aataattcgg
    20341 tcaatgtggc tgtaaaccat ggtgtactca tcggcgacaa ataccttttc aaccaaaaat
    20401 tcattgtgca gcccttgggt atccagcgtt tttgcgtgcg cactgtggat gctctgtctt
    20461 acgtccacat caacctccga taatcagtga agcgtgaaaa tagaaaacga tagtgaaaca
    20521 ctgtttcgtt ttctctataa agggatgata tgcccatggg ctagggtttt caattaaaaa
    20581 taaaacaatg ttttattttt aagttaagga ttaaaaaaag tgcagtgtcg atcacgaata
    20641 tgtcatgaga atggaaaaat gagggagccc agaaaatgta tgtcgacttg ccagccatca
    20701 ttattcaaca gattaatgac ggcagatatt tatcggtaag gaggaaatgc agagctactc
    20761 gtcacgttca atggtcaatg ccacgccctg gcccccgccg atacaaagcg ttgccagccc
    20821 tttgcgggca ttacgtttca ccatttcatg aaccagagaa accaggattc ggcaaccgga
    20881 agcgcctatc gggtgaccga gtgcgatcgc gccaccattg acattgaccc gacgctcatc
    20941 ccactcaagc atcttgccaa ccgaaagcgc ctgtgcagca aacgcttcat tagcctcgat
    21001 aagatcgaca tcagccaact gccagcctac acgctccagg caacggcggg tcgcatacac
    21061 cggcgcaatt cccatcaatg ccggatctac accaacgctg gcaaatgcgc ggatgcgggc
    21121 cagcacgggt aaattcaacg ctcgtgcttt ggcttcgctc atcatcatta ccgcagctgc
    21181 gccatcgttt atggataatg cattccccgc ggtcacagaa ccgagactat caaatgaagg
    21241 atttaaacgg gctaaacctt ctgcactggc gtcagtgcat ggctgttcat cggtatcaac
    21301 aaccaacgtc tgaccgttac tttggatcat taccgggacg atctcatctt taaatcgtcc
    21361 ggcgtcaatc gccgctcgcg ctttttgttg cgagctaagt gcgtaagcat cctgcaactg
    21421 acggctgatg ccatattcgc gagccagatt ttcggcggtg acaccaatat gataatcatt
    21481 gaaggcatcc cacaacccat catgcaccag actgtcaacc aactggctat tgccaagctg
    21541 tgcaccggtg cggctatcag tcagaacatg tggtgcgcgg ctcatgtttt cctggccacc
    21601 ggcgatgaca atatcagcct cgccacactg tatcgcctga gtagccagat gcagtgcttt
    21661 aagcccagaa ccgcaaacgt cattaatagt gattgcagaa acgctattag gaagaccacc
    21721 tttaatagcc gattgccttg ccggattctg ccctgcccct gcagtcaaca cctgaccaag
    21781 aattacttca tccaccgcat atgcaggaac gccggtacgt tctattaacg ctttcacgac
    21841 caaactacca agttccacgg cggaatgacc cgctaacgca ccacgaaagc agccgatagg
    21901 tgtccgtaac gccccgacaa tcacaacgtc tttcatcaca acctcgcacc aattaacagt
    21961 gcaatagtaa atgattgtta attacagtta tcttaattgt ttaaaaaaag tgatttttat
    22021 cacaaaagaa atatgcctga gcagcagtca gagacataac tggcacgtaa ggtttgcaac
    22081 cactaaccca ccaatagagg ggtagatagg gcgttaatct cccatactta acctggttta
    22141 tggtaaattg ccctccattt tgtttaattt gtagatgata cgttcagata atgtctaata
    22201 tttggtctaa agaagaaact ctgtggagtt tcgcgctcta cggcacagcc gttggtgcag
    22261 gcacgctctt ccttcctatt cagttaggtt cggcaggggc tgtggtcctg tttattactg
    22321 ctctggtcgc ctggccttta acatattggc cacataaagc tttatgccag ttcatcctct
    22381 catcgaaaac atcagcaggt gaagggataa cgggcgcggt aacacactac tatggcaaga
    22441 agattggtaa tctgattacc acgctgtact tcatcgcctt ttttgtcgtc gtgttgatat
    22501 atgcagtggc aattaccaac tcacttacag aacagctggc aaagcatatg gttattgatc
    22561 ttcgcatccg tatgttggtg agtctgggtg ggtaatgact ccaacttact gatagtgttt
    22621 tatgttcaga taatgcccga tgaccttgtc atgcag
//
LOCUS       DAJVUY010000062        22466 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.062, whole genome shotgun sequence.
ACCESSION   DAJVUY010000062 DAJVUY010000000
VERSION     DAJVUY010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22466
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.062"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            53..244
                     /locus_tag="OQQ72_002074"
     CDS             53..244
                     /locus_tag="OQQ72_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS2011807.1"
                     /translation="MKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAPEIHTGD
                     DDALKEILTHVTEATKKQH"
     gene            213..1319
                     /locus_tag="OQQ72_002075"
     CDS             213..1319
                     /locus_tag="OQQ72_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS2011808.1"
                     /translation="MSPRPRKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWV"
     gene            1499..2293
                     /gene="potC"
                     /locus_tag="OQQ72_002076"
     CDS             1499..2293
                     /gene="potC"
                     /locus_tag="OQQ72_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCS2011809.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMISPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2290..3336
                     /gene="potD"
                     /locus_tag="OQQ72_002077"
     CDS             2290..3336
                     /gene="potD"
                     /locus_tag="OQQ72_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HCS2011810.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETCIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="OQQ72_002078"
     CDS             complement(3492..4313)
                     /gene="cobB"
                     /locus_tag="OQQ72_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HCS2011811.1"
                     /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="OQQ72_002079"
     CDS             complement(4329..5240)
                     /gene="nagK"
                     /locus_tag="OQQ72_002079"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCS2011812.1"
                     /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC
                     ELVAEADQRFGCRGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL
                     DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRL
                     PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQQLQAPEIIALYNQG
                     DEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPV
                     ARVPRIERARHGDAGGMRGAAFLHLTD"
     gene            complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="OQQ72_002080"
     CDS             complement(5269..6513)
                     /gene="lolE"
                     /locus_tag="OQQ72_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HCS2011813.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="OQQ72_002081"
     CDS             complement(6513..7214)
                     /gene="lolD"
                     /locus_tag="OQQ72_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HCS2011814.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="OQQ72_002082"
     CDS             complement(7207..8406)
                     /gene="lolC"
                     /locus_tag="OQQ72_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HCS2011815.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSINPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8668..9741
                     /locus_tag="OQQ72_002083"
     CDS             8668..9741
                     /locus_tag="OQQ72_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HCS2011816.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFPHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9869..13315
                     /gene="mfd"
                     /locus_tag="OQQ72_002084"
     CDS             9869..13315
                     /gene="mfd"
                     /locus_tag="OQQ72_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCS2011817.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13459..14421
                     /gene="ldtC"
                     /locus_tag="OQQ72_002085"
     CDS             13459..14421
                     /gene="ldtC"
                     /locus_tag="OQQ72_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HCS2011818.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="OQQ72_002086"
     CDS             complement(14504..14761)
                     /gene="bhsA"
                     /locus_tag="OQQ72_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
                     /protein_id="HCS2011819.1"
                     /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISAKAG
                     TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            15002..15634
                     /gene="comR"
                     /locus_tag="OQQ72_002087"
     CDS             15002..15634
                     /gene="comR"
                     /locus_tag="OQQ72_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HCS2011820.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15696..16235)
                     /locus_tag="OQQ72_002088"
     CDS             complement(15696..16235)
                     /locus_tag="OQQ72_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS2011821.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16462..17766)
                     /gene="ndh"
                     /locus_tag="OQQ72_002089"
     CDS             complement(16462..17766)
                     /gene="ndh"
                     /locus_tag="OQQ72_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone dehydrogenase"
                     /protein_id="HCS2011822.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTHDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18166..18708)
                     /locus_tag="OQQ72_002090"
     CDS             complement(18166..18708)
                     /locus_tag="OQQ72_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS2011823.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="OQQ72_002091"
     CDS             complement(18731..19756)
                     /gene="nagZ"
                     /locus_tag="OQQ72_002091"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCS2011824.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="OQQ72_002092"
     CDS             complement(19767..20591)
                     /gene="thiK"
                     /locus_tag="OQQ72_002092"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HCS2011825.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="OQQ72_002093"
     CDS             complement(20575..21213)
                     /gene="lpoB"
                     /locus_tag="OQQ72_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HCS2011826.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPIVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21227..21604)
                     /locus_tag="OQQ72_002094"
     CDS             complement(21227..21604)
                     /locus_tag="OQQ72_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HCS2011827.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="OQQ72_002095"
     CDS             complement(21607..21966)
                     /gene="hinT"
                     /locus_tag="OQQ72_002095"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HCS2011828.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVVAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
BASE COUNT         5601 a         5899 c         5574 g         5392 t
ORIGIN      
        1 cgacgagtgg aaaccaaaac ggttcagtct cccaataaca aacactaccc tggtgaaata
       61 cggaaaacta ggatacatcg ttccaagacc acaaaaaatt cgtgggcgtt ggctgataga
      121 tcgccgagca gtatttgttg ggccaggtga aacgggaatt gcgccggaaa ttcatactgg
      181 cgatgatgat gcactgaagg agattttaac tcatgtcacc gaggccacga aaaaacagca
      241 ctgacgtagc cggtctttac gaaaagtttg atcgcagaac tggcagagtt tactaccagt
      301 ataaaaatcc tgtgactgga aaatttcacg gactcggaac agacaaaggt aaggcagaaa
      361 aaatcgcttc cacagccaat cagcgaatag ctgcagcaga agctgaatat ttcatgcgca
      421 aaattgatga aagtccgtca gcaacaaaac gtcggggtat cagattaaag gcatgggttg
      481 atcgatatct gaaaatacag gacacgcgac tgaaaaatgg agatattgca gctacaactc
      541 acaaagaaaa aactcgaatg gctgcatacc tggtttcccg tctgggaaac cacccattga
      601 aagaactgga agtaagagac tttgcattaa tactggatga gtggctggat aaagacatgg
      661 tcagcacagc gagagtaaat cgtggattat gggttgatat ttataaagaa gcacagcatg
      721 caggggaagt tcctcctgga tggaatcctc cggaggctac ccgtaaaccg atccctaaag
      781 taaccagagc caggctcacc atggaagact ggcaaaaaat ttacaatgca acgcctgaaa
      841 aacactttat ccgtaacgca atgcttcttg cgattgttac tggtcagcgc cgtgatgaca
      901 tttgccacat gcgtttttca gatgtgtgga acgaacactt gcatatcacc cagggaaaaa
      961 ccggaatgcg tctggcgtta ccgcttacac tacgctgtga tgccattggg ataacgttaa
     1021 aagaagttat tgatgggtgc cgagacagaa tattaagtcc atatctaatc catagtcggc
     1081 accagaaaca accgaagccg atgagtaaag acaacctgag cgactacttt gccaaagcac
     1141 gggatctggc tgggataatt ccaccagcag gaaaaactcc gccaacattt catgaacaac
     1201 gctctctatc agaacggctg taccgtgcac agggtatcga tacaaaaaca ttactaggac
     1261 ataaagtcca ggcaaccacc gatcgctata acgatactcg aggtcaggaa tgggtttaag
     1321 ctggttattt gacaaacacc atatggaata tccgtcacca tctcaggaaa aaagtgttgt
     1381 aaaatgcgtg gcctagtttt ggggaaacgt tttggagaga ttttggagaa aggaaaaaat
     1441 tgaataaatt caaaatcctg aaagtgctcc accttatgaa taagaaggtg gaactcgaat
     1501 gatcggtcga ctgcttcgcg gcggttttat gaccgctatc tacgcgtacc tgtatatccc
     1561 aatcattatt ttgattgtga actcctttaa cagctcgcgc tttggcatca actggcaggg
     1621 ttttaccacc aaatggtata gcctgctgat gaacaacgac agcctgttac aggcagcgca
     1681 gcattcacta acaatggcgg tgttttcggc gacgtttgct acgcttatcg gttcactgac
     1741 ggcagttgcg ctgtaccgtt atcgctttcg cggtaagccg ttcgttagcg gaatgctgtt
     1801 tgtggtaatg atatcaccag atatcgtgat ggcaatttcg ctgctggtgc tgtttatgct
     1861 gctgggtatt cagcttggct tctggtcgct gctgttctcg catatcacct tctgcctgcc
     1921 atttgtggtg gtgacggtgt attcgcgcct gaaaggtttt gacgtgcgga tgctggaagc
     1981 ggcgaaagat ctcggtgcca gcgaatttac aattctgcga aaaatcatac tgccactggc
     2041 aatgccagcg gtggcagcgg gctgggtgtt aagctttacc ctgtcgatgg acgatgtggt
     2101 agtttcttcg ttcgtcaccg gaccaagtta tgaaattctg ccgttaaaaa tttattcgat
     2161 ggtcaaagtc ggcgtatcgc cggaagttaa cgcgctggca accatattac tggtgctgtc
     2221 gctggtgatg gttattgcca gtcagcttat tgctcgtgat aaaacgaaag gtaacacagg
     2281 ggacgttaaa tgaaaaaatg gtcacgccac ctgctcgcgg cgggtgctct ggcactgggc
     2341 atgagcgccg ctcacgccga tgacaacaac acgctgtatt tctacaactg gaccgagtac
     2401 gtgccgccag gactgcttga acagttcacc aaagaaacct gtattaaggt tatctattcg
     2461 acttacgagt cgaacgaaac catgtacgcc aagctgaaaa cgtacaaaga cggtgcgtat
     2521 gacctggtgg ttccttcaac ctattacgtc gataaaatgc gtaaagaagg gatgatccag
     2581 aagatcgaca agtcgaagtt aacgaacttc agcaatctcg atccagacat gctcaacaag
     2641 ccttttgacc cgaataacga ctactccatt ccgtatatct ggggggcgac ggcgattggt
     2701 gttaacggtg atgcggtgga tccgaaatct gtcaccagct gggccgatct gtggaagcca
     2761 gagtacaaag gcagcctgct gttgaccgac gatgcccgtg aagtgttcca gatggcgctg
     2821 cgtaagctgg gctattccgg taacaccacc gatccgaaag agattgaagc tgcatataac
     2881 gagctgaaaa aactgatgcc aaacgtcgca gcgtttaact ccgataaccc ggctaacccg
     2941 tacatggaag gcgaagttaa cctcggcatg atctggaacg gttctgcttt cgttgcacgc
     3001 caggcgggta cgcctattga cgtggtgtgg ccgaaagaag gcggcatatt ctggatggac
     3061 agcctggcga tcccggcaaa tgccaaaaac aaagaaggcg cgctgaaatt gatcaacttc
     3121 ctgctgcgcc cggatgtggc aaaacaggtt gctgaaacta tcggttatcc aacgccaaac
     3181 cttgcggcgc gtaagctgtt aagtccagaa gtggcgaacg ataaaacgct ctacccggat
     3241 gctgaaacca ttaaaaatgg cgaatggcag aatgacgttg gcgcagccag cagcatttat
     3301 gaagagtatt atcagaagct gaaagcagga cgttaattca gcaagcgggc ggtggtatta
     3361 ccgcccgttt tttatttagc aaggatgtgg ctaatgagtc aggacagtag agttttatcc
     3421 gactctttcg tcggtattgt ggtccgctcg taggcctgat aagcgtagcg catcaggcaa
     3481 tgcttcctgc tttataatcc cttcagcaac ttttcaacaa actcaggcac cacctggctt
     3541 gccgggccgt aatatttctc ggcaaattca ttaccgacct gacttggttc gagattcagt
     3601 tccacggtgt gcgcgccatg cagtttcgct tcgtgaacaa acccagccgc cggataaaca
     3661 tgcccggaag taccaatggc aatgaaaata tcagccatcg acaacgccat ataaatttca
     3721 tccatgccga gtggcatttc gccaaaccaa acgacgtgcg ggcgcaaggg tgccgggaac
     3781 tggcaacaat ggcatttatc ttctggcgta acgtctccgg tccagtcgag aacctgacca
     3841 ctttgcgaac aacgaacttt cagcaattcc ccatgcatat gaatgacatt ggtattacct
     3901 gcgcgttcat gcaggttgtc tatattctgc gttaccagca aaaagcgatc gccgagagcg
     3961 tcttgcagtt tagccagcgc aagatgcgcg gcgttaggct gaatttttgg ctgctgcagc
     4021 tgtcgacgac gggcgttata aaacgcttgc accagttcag gatcgcgatc gaaaccttcc
     4081 ggcgttgcca catcttcaac ccgatgttct tcccacaggc catctgcggc gcgaaaggta
     4141 cgaatacctg attccgcaga aattcctgcc cctgtcagta cgagtactct tggtttttcc
     4201 attgcttccg gcaccacttt atctctgaaa aaaatacgct gacgcaaacg ctcgcgcagg
     4261 cggcgtttat ttttacgaaa acgacttaac cgatgacccc gacgcgacag catagcaacc
     4321 tctgttgttt aatcggttag atgtaggaag gccgcaccac gcattcctcc cgcatcaccg
     4381 tggcgcgcgc gttcaatgcg cggaacacga gctacaggta agagatgacg aggcagcctg
     4441 tccgccagtt gcgttgtgat tgccgggaaa ttcgataagc caccaccaat gacgaccagg
     4501 tcagggtcaa caatggtcag gatatttccc agacaaaccg ctaataaatc cagataacgc
     4561 tcaacgtgcg cccttgcctg ctcatcgcct tgattataaa gcgcaataat ttcgggagcc
     4621 tgcaactgtt gatgataata gtgttgatac agccacgcaa aaccgcgacc agacagataa
     4681 ttctcaatgc agccatgctg accacagccg cagcggcgta acgggaaatc caaccccatc
     4741 atggttaacg catcaaccgg cagacgcata tggccaaact cgccggtaat gtagctttta
     4801 ccggtaatcg gtttgccgtt gaaaatcagc ccaccgccaa cgccggtacc aagaatcaac
     4861 cccatcacca gtggatattg cgtaaattca tcatcccagg cttctgaaag ggcaaaacag
     4921 ttggcatcgt tatcaaggcg tacatcgcga tcaagacgtg cgctcaggtc ggcacgcagc
     4981 ggtttaccgc tggcagcggg gacattggcg gcatacagcg taccatcttc tgtttccggc
     5041 attcccggta taccaatgcc gacagaacct ctacagccaa aacgttgatc agcttcggct
     5101 accagctcgc acactgcatc taaaaatgcg tcatagctgt cacgcggtgt cggcacccgc
     5161 ttttcccact gcaactgccg accgctatca aacacgccaa gcgcaatttt tgttccacca
     5221 atatcaaacc cgtaatacat tgccgctcct tgttttaatg tactgccttt actggccgct
     5281 aaggactcgc gcagggtcaa tattactggc gcgccgcgcc ggataccaac ttgccaaaag
     5341 actcagcaac aatgctgtga ccagtacgta gaagacgtcc agccagtgca attccgatgg
     5401 caggaagtca ataaaataga tatcgctgga gaggaactga tgaccgatca gcttttcaat
     5461 ccgctcaata atcggggtaa gttgcagtga aacaactacg ccgataatca gcccacacag
     5521 gctgccgaac agccctgcca gcaatccata ccagacaaag atggcgcgaa ttaaaccatc
     5581 tttcgccccc agcgttctta atactgcgat atcgccactc ttatctttca ccgccatcac
     5641 taaggtggag acgatgttga aacaggccac gccaatcacc agtaccatcg ccagatacat
     5701 aatggcgcgg atcatctgga tatcgcgata catatagccg taagtaccaa tccagctttt
     5761 aatataaaca tagctgttgg tcatttcacc cgcatcgcgt accagcttat tggcgttgaa
     5821 aacatccgtc attttaaggg caatacctga cacgctggaa cccatatcaa gatattgttg
     5881 ggcatccgcc agcgggatca tggcaaaact gtgatcgagt tggccactca actgcaaaat
     5941 acccgcaacg tgcaaacgca cacgttttgg ctgcatcagt ttatgctcag gattcgagtt
     6001 ggggatcatg atcgacaccc aatcgccctg cttcactttc agcgcatccg ccacgccttt
     6061 gccgatgata atttgctgtt cgcccgcttt aaaattgcgc cacgcatccc cctgaacaaa
     6121 cgagggtaat gcgctcagac gctgttcctg ttgtgggtta acgcccttca cctggattgc
     6181 gcgcagattc gctccacttt ccaccagccc ggtgaaattg atatacggcg cagcggcggc
     6241 aatacccggc actttctgca ctttatccag tgcttcctgc cagttagtcc atggctgatt
     6301 taccgcttcg atttcaccat gcggcaccac cgccagaatg cggttattca gttcgcgttc
     6361 aaagccgttc atcgcgctta agccgacgat caataccgcc acaccgaggg caatgccaat
     6421 ggtagaaatg acggagatca gcgacaccat gccgccgcgc cgccgtccgc gactaaaacg
     6481 caggccaatt aataacgata aaggcatcgc cattactccg cccccatcag gctcagttcc
     6541 gccgtcagac gtccatcacg catttctaac tggcggctca tacgtttcgc cagttgcagg
     6601 tcgtgagtaa ccaccaggaa ggcggtgccc tgcaagcgat tcaattcccc aagcaactgg
     6661 aagatgctgt cggcgttacg cgcatcgagg ttaccggtag gctcatccgc cagtaccaga
     6721 cgcggattat tgaccagcgc acgggcaatc gctacacgct ggcgttcgcc gccagaaagt
     6781 tcagatgggc ggtgattcgc acgatgctcc agccccaccg cttttaacat ctccagtgca
     6841 cggctgttga tttcagcggg ctttttcttg ccaatcagca gcggcatagc cacgttttcc
     6901 agggcggtaa aatccggcag caggtggtga aactgataaa taaagcccag tttctggttg
     6961 cgcagttctg cttttgctgc cgacgacagt ttgctcatcg gttgaccgtt aaagatcaca
     7021 tcgccggagg ttggcgtatc cagtccgccc agcaggtgca gcaaggtgct tttaccggaa
     7081 ccagagctac cgacgatcgc catcatttca ccttcgccga cgctgaaact gacattgtgc
     7141 agtacatcgg tttgcacact gccttcctga tagcgtttgc acaggttgtc gcattgcaac
     7201 aggatcttat tcataacgta aagcctcagc gggttgtgtg gcggcagcgc gccatgaagg
     7261 gtaaagcgta gacagcagcg cgatagccat cgccaccagc gcaataacaa tgacctgtaa
     7321 aggttcgata gccatcggca gcgccgcgcc atcaagcagg acgccgatta ttggcatcag
     7381 attatttaac tggctggcaa gcagtgcgcc aagcgccgct ccgaggatcg caccgataat
     7441 cccggcgctg gccccttgca ccataaagat catcatgatt tgtcgcggag ttaagccttg
     7501 cgtttgcagg atcgctactt cgccctgctt ctccatcacc atcagcccca gcgaggtaat
     7561 aatgttaaac gccgcaacgg cgacaatcag gctcagcagt aaacccatca tatttttttc
     7621 catgcgtacg gcctggaaca actcgccttt acgatcacgc cagtcctgcc atttgctgtc
     7681 ttcaggcagt ttttgctgac ttaatgagtc gactttcagc ggctcatcca gccacaaacg
     7741 ccagccggta atattgcctg ccggataacg catcagacgc gaggcatcct caatattcac
     7801 cagcatttca ttgccatcga cttcactgtt ggcggcgaaa gtgccaatca cattgaacag
     7861 gcgctgactt ggaatacgcc ccatcggcgt gaactggctg gcagatggta ccatcatgcg
     7921 gatttgatca ccgcgattaa cgcctagctg tgaggcaagt tgttcgccga ggatgacatt
     7981 atatttcccc ggctcgaggt cagtttgttt cacattgacc agatacggcg ttagtggatc
     8041 tttttgcgcc ggatcgatac ccagcatcac cccgaccgcc acgctgcgcg cgctttgcag
     8101 taccacatca ccggtagtaa taggtgcgac gcgattaacg ccgtccagtt tgactgccgt
     8161 ttccgggagt tgctgcgggt taatagagcc atgctcagaa gagagaattg cctgtggcat
     8221 caggccaagg atgttgtttt gcagctcgcg ctcaaagccg ttcatcactg acaatactgt
     8281 gaccagcgcc atcaccccga gggtaatgcc gatggtagaa agccaggaga cgaaacgacc
     8341 gaagcgatcc gctgcacgcc cacgcatgta acgcaggcca ataaatagag cgacaggttg
     8401 gtacatgaaa tccgtctggt tgctgtagca aagacacgag tatataagcg aaagcaagat
     8461 gggtaaacgt ctgaactgta agtgatcgtc agggctaatc tgaaaagccc ccgtaaatca
     8521 atcggctaaa ttgccatgtt ttatcatcaa tcttgccgcc tgatcttaat ctgaaaaatc
     8581 atccaataca gacagatacc cattacacct cgggtcataa cccgcaggat caaccgcatg
     8641 taaattaaaa aagagcgtgt tgtcctgatg aaacaaaaag agctatggat taaccagatc
     8701 aaagggttat gtatttgtcc ggtggtgatt tatcactcgg tcattacctt ttatccgcat
     8761 atgaccactt ttccgcatcc gttatcggaa gtcctgagca aatgctggat ctatttcaat
     8821 ctttaccttg caccctttcg tatgccggtt tttttcttta tatccggcta tttgattcgc
     8881 cgctatatcg acagcgtacc gtggggaaat tgtctcgata aacggatctg gaacatcttc
     8941 tgggtgctgg cgctttgggg cgtggtgcag tggctggcgt taagtgcgct gaaccagtgg
     9001 ctggcacctg agcgcgattt aagcaatgcc tccaatgccg cttatgccga ttccaccggt
     9061 gagttcctgc acgggatgat caccgccagc accagcttgt ggtatctgta tgcgttaatt
     9121 gtctatttcg tggtatgtaa aatttttagc cgtctggcgc tgccactatt cgccttgttt
     9181 gtactgctga gtgtggcggt taatttcgtt cccacgccgt ggtggggaat gaacagtgtg
     9241 atccgcaatt tgccttatta cagccttggc gcatggtttg gcgcaacaat aatgacctgt
     9301 gttaaagagg taccgttgcg ccgccatctg ctgatggctt ctttgcttac cgttctggcg
     9361 gtcggtgcct ggttgtttac tatctcgctg ctgttgtcgc tggtatcgat tgtggtgatc
     9421 atgaagctgt tttatcagta cgagcaacga ttcggtatgc gctccaccag cctgctgaat
     9481 gtgattggct ccaacaccat tgctatctac accacccatc gcattctggt tgaaatattc
     9541 agcttaactc tgcttgcgca aatgaacgca gcacgctggt cgccgcaagt cgaactgaca
     9601 ctcctgctgg tttatccctt tgtcagtttg ttcatctgta ctgttgcggg cttgctggta
     9661 agaaaacttt cacagcgtgc attcagcgat ctgttgttct ccccgccttc actgcccgct
     9721 gccgtcagtt actcccgcta agccatcgcc ccagccgggg cgattcaatt tgctaaacca
     9781 tgtcgattac ggataatgaa cagcattgct tatcagagat atgcccccat atgttgaggc
     9841 atatcctaac gagaatctga caaccgttat gcctgaacaa tatcgttata cgctgcccgt
     9901 caaagcgggt gagcagcgtc tgctgggcga gttaaccggc gcagcctgtg caacgctggt
     9961 agcggaaatt gccgaacgtc acgccggtcc ggtggtactc attgcaccag atatgcaaaa
    10021 tgctctgcgt ttgcatgatg aaatcagtca gttcaccgat cagatggtga tgaatctggc
    10081 ggactgggaa actcttccct acgacagctt ttcgcctcat caggacatta tctcctcgcg
    10141 cctttccacc ctttaccagc taccgacgat gcagcgtggc gtactgattg ttccggtgaa
    10201 tacgcttatg cagcgcgttt gcccacacag ttttctccac ggtcatgcgc tggtgatgaa
    10261 aaaaggtcag cgcctgtcac gagatgcatt acgaacccaa ctggacagcg ccggttatcg
    10321 ccatgttgac caggtgatgg agcacggcga atacgccacg cgcggcgcgt tgctggatct
    10381 cttcccgatg gggagtgagc tgccttatcg tcttgatttc tttgatgatg aaatcgacag
    10441 cctgcgggtg tttgacgtcg acagccagcg cacgctggag gaagtagaag cgatcaatct
    10501 gctgcccgcg cacgaatttc cgaccgataa agcggcaatt gaactgttcc gcagccagtg
    10561 gcgcgatacc ttcgaagtga agcgcgatcc ggaacatatt taccagcaag tgagtaaagg
    10621 cacattacct gccgggatcg agtactggca gccattgttc ttcagcgaac cactgccgcc
    10681 gctgttcagt tatttccctg ccaatacctt gctcgtgaat actggcgatc tggaaaccag
    10741 tgccgaacgt ttccaggctg acacgctggc gcgttttgag aatcgcggcg tcgatccgat
    10801 gcgcccgctg ttgccaccac aatcgctctg gctgcgggtg gacgagctct tctcagagct
    10861 gaaaaactgg ccccgggtgc agctaaaaac taaacattta ccgacaaaag ccgcgaatgc
    10921 caatttaggt ttccagaaac tgccagacct agccgttcag gcgcaacaaa aagcgccgct
    10981 ggatgcgctg cgtaagttcc tcgagacttt cgacggtccg gtggtgttct cggtagaaag
    11041 tgaaggtcgc cgtgaagcgc tgggtgaact gctcgcacga attaaaattg ctccgcaacg
    11101 cattatgcgt cttgatgaag ccagcgaccg tgggcgttat ctgatgattg gcgctgccga
    11161 acatggtttt gtcgataagg tgcgtaatct ggcgctgatc tgcgaaagcg atctgctcgg
    11221 tgaacgtgtt gcccgccgtc gtcaggattc tcgccgcacc atcaaccccg atacactgat
    11281 ccgtaacctt gcggagctgc atattggtca gccggtggtc catctggagc acggtgtcgg
    11341 gcgctatgcc ggaatgacca cgctcgaagc gggcggcatt actggcgagt atttgatgct
    11401 cacctatgcc aacgacgcca aactgtatgt tccggtgtcg tcactgcatc tgattagccg
    11461 ttacgcaggt ggcgcggaag aaaacgcccc gctgcataaa cttggcggcg atgcgtggtc
    11521 acgcgcgcgg cagaaagcgg cggaaaaagt gcgtgatgtg gcggcggaat tgctggatat
    11581 ctacgcgcaa cgcgccgcca aagagggctt cgcgtttaaa cacgatcgtg agcagtatca
    11641 gttgttctgc gacagcttcc cgtttgaaac cacgccggat caggcgcagg ccattaatgc
    11701 ggtacttagc gacatgtgtc agccgctggc aatggatcgt ctggtgtgcg gcgatgttgg
    11761 ctttggtaaa acagaagtgg cgatgcgcgc cgctttcctg gcagtagata accacaagca
    11821 ggtggcggtg ttggtgccta ccacccttct cgcgcagcag cattacgaca acttccgcga
    11881 ccgtttcgcc aactggccgg tacgtatcga aatgatctcc cgtttccgca gcgccaaaga
    11941 gcagacgcaa atccttgcgg aagtggcgga agggaaaatc gatattctga tcggtacgca
    12001 caaactgctg caaagtgacg tcaagtttaa agatttaggc ctgctgattg tcgatgaaga
    12061 acaccgcttc ggggtgcgtc ataaagagcg cattaaagcg atgcgcgcga acgtggatat
    12121 tctgacgctt actgcaacgc cgatcccacg cacgctgaat atggcaatga gcggaatgcg
    12181 tgacctgtcg attatcgcca cgccgcccgc ccgtcgtctg gcagttaaaa cctttgtccg
    12241 tgagtatgac agcctggtgg tccgggaggc gatcctgcgt gaaattttgc gcggggggca
    12301 ggtttattat ctctacaatg atgtggaaaa catccagaaa gctgccgaac ggctggcaga
    12361 actggtgcca gaagcgcgga tcgccatcgg tcacgggcag atgcgcgagc gcgaactgga
    12421 acgggtgatg aatgatttcc atcatcaacg tttcaacgtg ctggtttgta caaccattat
    12481 cgaaaccggg atcgacatcc cgacagccaa caccattatc attgaacgcg cggatcactt
    12541 cggtctggcg cagctgcacc agttacgcgg tcgcgtcgga cgttcacatc atcaggcata
    12601 tgcatggctg ctgacgccgc atccaaaagc gatgactacc gatgcacaaa aacgtcttga
    12661 agcgattgcc tcgctggaag atctcggtgc aggctttgcg ctggcaacgc acgatctgga
    12721 gatccgcggc gcgggtgaac tgcttggcga agaacaaagt ggctcaatgg aaaccatcgg
    12781 tttctcgctg tatatggagt tgctggaaaa cgccgtcgat gcactgaaag ccggacgcga
    12841 gccgtcgctg gaagatctca ccagccagca aacagaagtc gagctgcgga tgccgtcgct
    12901 attgccagat gatttcattc ctgacgtgaa tacgcgtttg tcgttctata aacgtattgc
    12961 cagcgccaaa acggaaaacg aactggaaga gatcaaagtc gagcttatcg atcgcttcgg
    13021 cctgctgccg gatccggcgc gtaccctgct ggatgttgcc cgtctgcgcc agcaagcgca
    13081 gaaactgggg atcaggaagc tggaaggtaa tgagaaaggc ggggtgatcg aatttgccga
    13141 gaagaatcac gttaatccgg cctggttgat tggtttgctg caaaaacagc cgcagcatta
    13201 ccgccttgat ggtccgacgc gcctgaaatt tattcaggat ttgagtgagc ggaaaacgcg
    13261 tatcgaatgg gtacgccagt ttatgcgtga actggaagag aacgcgatcg cttaatggta
    13321 aatcgggggc gtttctgcgc ccccatcggc aacatttaca aattctttgc acttccctgc
    13381 actatccgac actgtcacca tccataattc aggcttatct gtttattaca ataaccttat
    13441 atttattatg gatttttggt gatgatcaaa acgcgttttt ctcgctggct aacgtttttt
    13501 acgttcgccg ctgccgtggc gctggcgcta ccggcaaaag ccaacacctg gccgctgccg
    13561 ccagcgggca gtcgtctggt tggcgaaaac aaatttcatg tggtggaaaa tgacggtggt
    13621 tctctggaag ccatcgccaa aaaatataac gtcggctttc tcgctctgtt acaggctaac
    13681 cccggcgttg atccttacgt accgcgcgcg ggcagcgtgt taacgatccc gttgcaaacc
    13741 ctacttccag acgcgccgcg cgaaggcatt gtgatcaaca ttgcggagct gcgtctctat
    13801 tactacccgc cgggtaaaaa ttcggtaacc gtgtatccaa taggtattgg tcagttaggt
    13861 ggtgacacgc tgacaccgac aatggtgacc accgtttcag acaaacgtgc aaacccaacc
    13921 tggacgccaa cggcaaacac ccgcgcccgt tataaagcac agggaattga gttgcctgcg
    13981 gtagtgccgg ctggaccgga taacccaatg ggccatcatg cgattcgtct ggcggcctat
    14041 ggcggcgttt atttgcttca tggtacgaac gccgatttcg gcattggcat gcgggtaagt
    14101 tctggctgta ttcgtctgcg ggatgacgat atcaaaacac tctttagcca ggtcacccca
    14161 ggcaccaaag tgaatatcat caacactccg ataaaagtct ctgccgaacc aaacggtgcg
    14221 cgtctggttg aagtacatca gccgctgtca gagaagattg atgacgatcc gcagctgctg
    14281 ccaattacgc tgaatagcgc aatgcaatca tttaaagatg cagcacaaac tgacgctgaa
    14341 gtgatgcaac atgtgatgga tgtccgttcc gggatgccgg tggatgtccg ccgtcatcaa
    14401 gtgagcccac aaactctgta aatcctggat aaaaaaaatc cccgcgacac ggcatgtcgc
    14461 ggggaaaaaa tcagcagtag caggcattaa tgagggttaa tgcttattta taaattactg
    14521 ctgttccatg gagggtattc ggaccggtta cagaagtaat acggaaagat tttgcaccca
    14581 tctcatccgc tttttgcgcc agctgctctt ccagcgatcc cagatttgtc cccgctttag
    14641 cactgattgt accgactttt tgttggcctt ctggcgttga ctgaacttcg acagccgcaa
    14701 agctggcaaa tgacatggag cttaaaatcg ccgcagcgat gagggttttt acgtttttca
    14761 taatagtggc cttatgcaga tgaatgacgt cgcaagcaat tacttaacga tcgataacta
    14821 aatgacagat gtgatctgga tcacatacaa gatatttttt ataacaatca ttaattaatt
    14881 taaaaatctt taaatttcag ttaaatagaa agcaattatt tttatgggat ctggactggt
    14941 gaacggaggt gattattttt ataataatct ttcattcaca gtcaccaggt acaacggcat
    15001 catggcaact gactcaacac aatgtgtaaa aaaaagccgt ggccgcccaa aagtgttcga
    15061 cagggatgcc gcgcttgata aggccatgaa attgttctgg caacacggtt atgaagcgac
    15121 ttctcttgcg gacctcgtcg aagcgaccgg agccaaagcg cccacgctat acgcggaatt
    15181 taccaacaaa gaggggttat ttcgtgccgt tctcgaccgc tatatcgatc gttttgccgc
    15241 taagcatgaa gcacagctgt tttgtgaaga gaaaagcgtg gagtctgcgc tggctgacta
    15301 ttttgctgcc atcgccaact gctttaccag caaagacacc ccggcaggct gcttcatgat
    15361 caacaactgc accaccctct ccccagattc aggagatatc gccaatacgt tgaaatcacg
    15421 ccatgcgatg caagagcgca ctttgcagca gtttttatgt caacgacaag cgcgcgggga
    15481 aatcccgacc cactgtgacg tgacacatct ggcagaattc cttaattgta ttattcaggg
    15541 gatgtcgatc agcgcacgcg aaggtgcatc gctggaaaaa ctaatgcaga ttgccggaac
    15601 gactttgcgt ttatggcccg aactggtgaa ataagtcgca aaaaaagccc ctcagcctga
    15661 gcgaatgagg ggccaaattg cagagtacag ccttgttata ctttgttatt caaaatcagt
    15721 tgcccattac tatctagcgg gatctgcgta cccggatcgc ggtccatgcg gattttgccc
    15781 tgctgatcgc caatcttata ggtcacatca taaccgagca ttttttctga cttgtcatac
    15841 accgttttac aacgctgttg cgtagtcgtg taagtatcgc tttcctggag agagccctgg
    15901 atctggttac cggcatatcc accacccagc gcccccacaa cagtggcgac atctttaccg
    15961 cgaccaccgc caaactgatg ccctatcacg ccgccagcaa cagcgccgag caccgacccg
    16021 gtaatgcgat tttcatcctg caccggtcga cgatgggtca ctgtgacgtt gcgacactcc
    16081 tgacgcggtg ttttaaccgt ttccttgatt ggggttgcag aaacaacctg agcgtattgc
    16141 gggccacgtt caaacacgtt cagactggcc actgccgcta cgcccagcgc agctgcgaca
    16201 ccaatcccga tacccgccaa cattgattta ttcacgggaa cacctccttc tttgcagtta
    16261 tgccaatcat gcaagcgaag gagaaaagca gctatcagac agaagatgaa aagcgcggga
    16321 atggctggaa atacttaatg attcggagga gtctgaagga atgcctgatg cgacgcttaa
    16381 cgcgtcttat caggcctacc gctcgtacca tttgtccagg gcggatgagg cgtttatgcc
    16441 acatccgcca gtgtacgtcg attaatgcaa cttcaaacgc ggacggataa cgcggttaat
    16501 actccccacc agcatcatta atccggtttt aaagtaacca tgcagcgcaa tctgatgcat
    16561 tcggtatagc gagatatata caaagcgcgc aattcgtcct tcaatcatca ttgagccgcg
    16621 cgtcaagtta cccatcaggc taccaacggt ggagaagttc gacagcgata ccagtgaacc
    16681 atgatcttta tactgataat ttttcagcgg cttaccgttt atctgcgcca gaatattgtt
    16741 cattgcgcaa gtcgccatct ggtgtgcagc ctgagcacgc ggcggaacaa agcccccttc
    16801 cggacgcgtg catgacgcgc agtcgccaat agcgtaaatg tctggatcgt gggtggtttg
    16861 cagcgtcggt tccaccacca gctggttgat acggttagtt tcaagaccac cgatatcttt
    16921 caggaagtct ggcgctttga tcccggctgc ccacaccatc agatcagcct caatatattc
    16981 accatcttta gtgtgcaggc cgccttcatc agcactggtg accatggttt gcgtcagcac
    17041 gcgaacgcca agtttcgtta actcactatg ggccgcagca gagatgcgtg gcggtaatgc
    17101 aggcaaaata cgttctcccg cttctactag cgttacgttc agggcttcgt tggtcagacc
    17161 tttataaccg tagctgtgca gttgcttgac cgcgttatgc aactcagcgg agagttctac
    17221 acccgtcgcg ccgccaccga caatcgcaat gttcactttg ccattcgcgc ccaggttggc
    17281 ggagtatttc aggaacagat tcagcatctc ctggtggaag cgacgcgcct ggtgcgggtt
    17341 atcgaggaaa atgcagttct ctttgacgcc tggcgtattg aaatcgttag aggtgctacc
    17401 cagcgccatg accagggtat cataggcgat tttacgttcc ggaaccagca gttcaccttt
    17461 ctcgtcgcgt agttctgcaa tagtgattgt tttcgcttca cgatcaatat caatgacgga
    17521 acccaactgg aactggaaac catgattgcg cgcatgggcc agatagctca acgcatcgac
    17581 gccttcatca agcgagccag tcgccacttc gtgcagcagc ggtttccaca ggtggctgtg
    17641 gttacgatcg accagcgtaa ttttggcttt tttcttacgt cccagcttat gccccagctg
    17701 tgttgccatt tccagcccac cagcaccgcc gccgacaatc acaatctttt tcaatggcgt
    17761 agtcaacgtg acccccttaa atttattaac caattgttaa ttaatggtta ttaacatagc
    17821 tcttaattaa caacaggtta cagcaatgaa aatgttcttc gctattgaga ataacatgaa
    17881 tggtgcattg gtcataccaa aattgatgtt aatcaagttt tgttgctgaa aagataggcg
    17941 actttaccgg gtgagatcaa aaaatagagt ttattgttta ttatttgagc gaatttgtga
    18001 gagtgatata gagtgagggg tgtatgcagg gcgttcggta ggcctgataa gaggcgcatc
    18061 aggcattgat gctcgactgt cggatgcggc gtaaacgcct tatccgactt acagaattcg
    18121 gagcgcatca ggtaccggca aggttacctg atgcgacgag ggcatttacc cgagggtttt
    18181 gaacgcttta atgcgctgca aatgcgggga gatattcttg aatttgtgcg tctgctcttc
    18241 gtcccagaca atctcgtaat aatgatgcaa ctcttcagat gtccgctggc tgttaagcgc
    18301 ttcatcatta cgcgacaaaa tcaccaggca acgatcgcga ttcttctcgc ggaagttggt
    18361 cacacactta gtggcaatat cggcatactc ttccgggcga tcaatcttgc cttccatgtt
    18421 ctcataaggg aacaaattag ggttgaagat cacctggcgg atatcgcaaa gaaaaccaat
    18481 ccgttccgcc cagtatccgc ccagaccaac gccgcaaatc agcggacgct cgtcgacgtt
    18541 cagttgcaac attttgtcca cttctttaag cagatgctgc atatcatgtt tcggatgccg
    18601 cgtactgtag cttatcaagc gtacatccgg gtcaataaac tgcaattgta agactttctc
    18661 gtggttaccc ggactgttag agtcaaaacc gtgtaaatag ataatcatcg cttcctcaca
    18721 taagccaggg ttagtgacct gctttctctt cctgccagcg ttcatgtaac tgattcagac
    18781 gggtgctgct cgccttccag cgagccgagt ccatcagttc ctgtcgcgaa aatgaacctt
    18841 tatgatacaa acgtgtaaca cgttctgcct tgatcggtga cagattatct aacacgctga
    18901 cggccccttt acgattattg cagaccagga tcatatcgca acctgcgtcc agtgatgcct
    18961 gcccgcgttc ggcataactg cccataatcg cggcaccttc catcgataaa tcgtcagaga
    19021 aaattacacc gtcaaaacac agttcctgac gcaaaacggt tttcagccag taagaagaac
    19081 cgctcgccgg acgcggatca acatcactgt agatcacatg cgcaggcata atggcgtcga
    19141 gtttattttc gcggattaac gtgctgaaaa ccgacatatc tttggcacga atttccgctt
    19201 gcgggcgtgg gtcgcacggc gtctctttgt gtgaatctgc agttactgca ccgtgtcctg
    19261 ggaagtgttt cccggtcgtt ttcattccgg cttcatgcat cccatcaata aaccgactag
    19321 cgattgccag ggctttttct gggtcggcat gataagaacg ctcgccaatc gccgcgctga
    19381 tatgtcctac atccagcact ggcgcaaagc tgatatcaat atccatagcg atcatttcgc
    19441 tggccatcag ccaacccgcc tcttgcgcca gtttgccgcc ctcttccatt cccaacagcg
    19501 cagcaaagga ttgtgctgcc ggtaagcggg taaaaccttc gcgaaaacgc tgcacgcgtc
    19561 caccttcctg atctaccgcc accaccagat gattgcgcga tgctgcgcgg atctggcgca
    19621 ccagttcacg taactgggca ggatcatgat agttacgcgt aaagagaatc agccctccca
    19681 ccagcggatg cgccagtatt tcacgctctt ccgcgtccag ttcataacct tcgacatcca
    19741 acattactgg acccacactg ctctccttat tgttttatta atagctgccg ccaggtgtca
    19801 tcggccagcc tgataaattg ttgatcgccg gtttgtcgcc agcggtactc aaaccaccct
    19861 gctttgagca tcagcagcca gggaaaccat cgcctgacct gacgccataa ttgcgccgga
    19921 taaatcttcg cgcgagtggc atagtcattg accaattgcc ggtgctgttc agtattttcc
    19981 acccacaccg ccgccagttc cagcgcggta tcaccatctc cggcatactc ccagtcgatg
    20041 agttttaacc ctgatgcgct atgcactaaa tttccggcgt ggacatccat atgcaatgga
    20101 cttaagcgta aaggtcgtgg ttcccgcgct ttgcgcagac gttttaacat tcgcagccaa
    20161 cccacagtcc gccgcgccgg atcgctttgc tgccagtaca gttccagtaa cggcaacagc
    20221 gttattcgcc agccaaaacg tggttgttga tgtagataat acagcaagcc tgccagttcg
    20281 ttggtatccg gcaaatacgt ttttaccgcg ccgggcagat agtcgactac catccagtca
    20341 cggagatata aatgcggctt cggtgcaatg cttgcgggta gttgtgataa agcccgatac
    20401 tggcgcaaga acgcggactg cggcgcatca ggatcgtgcg gctgacgcac aacaaaacgc
    20461 tggccctgat gttcaatgag aaaactaccg ccactaagcc cactattaaa cgtcgtgacg
    20521 ggatgaaact gcgggaaaaa gcgcgacagc aattcgtcgc gcgtgatggg attattactg
    20581 cgaaacggca cctttacctg accagataat ttcgcccgtc tgcaccagca tcagctgcat
    20641 ttgtagggtc ggagcgttaa cgttgccaga ggcgctggag tacagcacgt aatgagcgcc
    20701 gacattgcgg gcaatgccta tggctttact acgggtgcct aaactgtcct gcggcgacaa
    20761 acctaactgt tgcttagcca tcgacagttg ctgggcggaa accagggtaa atttcccgtt
    20821 attagccagc gcatttcgca gcgtttcggt cgcttctgcg gcattcagcg aaccgttagt
    20881 acggttgtta acgctatcaa ccagcaggac gctacccgca gtcaccccgt cagccccaag
    20941 catcttactg actatcggct gcattgcgcc attccagtca taatggcgaa tatgcggcgc
    21001 aggcggtgcc gttcgatctt cgtgctcaat tgggcctggc tgctgcggga tcgtcggcac
    21061 cgagggcact gtggggacag gctgttgtgg ctcggctggt tgttccggcg ctggtttcac
    21121 ttcttctacc ggtgcaggtt cacgttgccc cacacacccg gcgagaaaca tcgccagcgc
    21181 ggtaatcaag gcgtagcgac tcatttttgt catcaagatt caccccttac aaatatagat
    21241 aaagtctgac tttgtgcgcc cccagaaaat tggcgctgcc gtacagcgtt accgccgaat
    21301 gtgcgggaat ggtaacgctg cgtggccttt ccagaggatg catctccagc cctctggcgt
    21361 cataccagta aaaacgataa tgaacggtaa cgggtttttg cctttcgtta taaagcgttg
    21421 aggatgctga aggttgaata tcagacgtcg aaaggacggg cttttctgca ctgatgcccg
    21481 cagccaataa agatgactcc atcaccagcg attgctcatc attcaccgga atttccggat
    21541 gtgaacgaca gcccaccagc agtaacaaca ccagagacac cagcccaaag catccttttc
    21601 tcatcgttac agacctttat gcgccagcat tggtcccagc ggacggccac ccaacaagtg
    21661 catatggatg tggtaaacct cttgtccgcc atggcggttg gtattcatga tcagacgata
    21721 gccatcttcg gcaatacctt cttgctcagc aatttttgcc actacggtga tcatgcgtcc
    21781 cagcgcctgc tcatgctcag ctgagacgtc gttcacagtc ggaatgagga tattcggaat
    21841 gatcagaata tgcgttggcg cttgcggcga aatatcgcga aacgccgtta ccagatcatc
    21901 ctggtagacg atatcggagg ggatctcacg acgaataatt ttgctgaata tagtttcttc
    21961 tgccacgaca ttttcctttt tcaaatagcc atgcgttgcg ccatgctacg ccgcgccaca
    22021 ctgcgagtat agagtatggt cgagttaaac ctgctctttc aaccttaact cacgatttct
    22081 taagcaaaaa atcgttttgc tgccgtatat atcgccatta ttcccatttc tgcctgcgaa
    22141 tgcgctgaaa agacattctc tgtttggttt acacgacaaa tatgaatgcg tatatttctc
    22201 atttgcattt acaaacaaaa ttattcgcac actaaatata atcgctcatc accctcctcc
    22261 ggcatgagcc tgacgacaac ataaaccatg agatttcaaa tgctttcaac acaatttaac
    22321 agggataatc aatatcaagc catcaccaaa ccgtcactac ttgccggttg catagcactg
    22381 gcactattac cttctgccgc ttttgctgca ccagccactg aagaaacggt gattgttgag
    22441 ggttcagcca cagctccaga tgatgg
//
LOCUS       DAJVUY010000063        22349 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.063, whole genome shotgun sequence.
ACCESSION   DAJVUY010000063 DAJVUY010000000
VERSION     DAJVUY010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22349
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.063"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1298
                     /locus_tag="OQQ72_002096"
     CDS             <1..1298
                     /locus_tag="OQQ72_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HCS2011829.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPY
                     VRILTQDEIDVRIKRFWRYLDGTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNL
                     TFIYDPEIPPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGG
                     GSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLV
                     KEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVA
                     NTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGI
                     SDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYR
                     AEGSRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ"
     gene            1270..2133
                     /locus_tag="OQQ72_002097"
     CDS             1270..2133
                     /locus_tag="OQQ72_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HCS2011830.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(2347..3129)
                     /locus_tag="OQQ72_002098"
     CDS             complement(2347..3129)
                     /locus_tag="OQQ72_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS2011831.1"
                     /translation="MICRFIDTHCHFDFLPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPLILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(3126..4199)
                     /locus_tag="OQQ72_002099"
     CDS             complement(3126..4199)
                     /locus_tag="OQQ72_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HCS2011832.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGCYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            complement(4321..4482)
                     /locus_tag="OQQ72_002100"
     CDS             complement(4321..4482)
                     /locus_tag="OQQ72_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HCS2011833.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ72_002101"
                     /pseudo
     CDS             complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ72_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
     gene            complement(5607..7196)
                     /gene="prfC"
                     /locus_tag="OQQ72_002102"
     CDS             complement(5607..7196)
                     /gene="prfC"
                     /locus_tag="OQQ72_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCS2011834.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWA
                     PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     SRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM
                     VNLRLAQERYPDVQFHQTREH"
     gene            complement(7287..7964)
                     /gene="yjjG"
                     /locus_tag="OQQ72_002103"
     CDS             complement(7287..7964)
                     /gene="yjjG"
                     /locus_tag="OQQ72_002103"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HCS2011835.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHLEQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            complement(7979..8425)
                     /gene="rimI"
                     /locus_tag="OQQ72_002104"
     CDS             complement(7979..8425)
                     /gene="rimI"
                     /locus_tag="OQQ72_002104"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HCS2011836.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKNFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            complement(8394..8807)
                     /gene="holD"
                     /locus_tag="OQQ72_002105"
     CDS             complement(8394..8807)
                     /gene="holD"
                     /locus_tag="OQQ72_002105"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HCS2011837.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            8910..9941
                     /gene="rsmC"
                     /locus_tag="OQQ72_002106"
     CDS             8910..9941
                     /gene="rsmC"
                     /locus_tag="OQQ72_002106"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HCS2011838.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHWQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            10209..10295
                     /locus_tag="OQQ72_002107"
     tRNA            10209..10295
                     /locus_tag="OQQ72_002107"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10243..10245,aa:Leu,seq:cag)
     gene            10324..10410
                     /locus_tag="OQQ72_002108"
     tRNA            10324..10410
                     /locus_tag="OQQ72_002108"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10358..10360,aa:Leu,seq:cag)
     gene            10446..10532
                     /locus_tag="OQQ72_002109"
     tRNA            10446..10532
                     /locus_tag="OQQ72_002109"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10480..10482,aa:Leu,seq:cag)
     gene            complement(10571..10807)
                     /locus_tag="OQQ72_002110"
     CDS             complement(10571..10807)
                     /locus_tag="OQQ72_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HCS2011839.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
     gene            10948..11736
                     /gene="fhuF"
                     /locus_tag="OQQ72_002111"
     CDS             10948..11736
                     /gene="fhuF"
                     /locus_tag="OQQ72_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HCS2011840.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            complement(11774..12450)
                     /gene="bglJ"
                     /locus_tag="OQQ72_002112"
                     /pseudo
     CDS             complement(11774..12450)
                     /gene="bglJ"
                     /locus_tag="OQQ72_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(12408..13133)
                     /locus_tag="OQQ72_002113"
     CDS             complement(12408..13133)
                     /locus_tag="OQQ72_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS2011841.1"
                     /translation="MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDF
                     TLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLM
                     CPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
                     VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELN
                     LPSVYGDAAEWNTAELRREMSHS"
     gene            13752..14522
                     /locus_tag="OQQ72_002114"
     CDS             13752..14522
                     /locus_tag="OQQ72_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HCS2011842.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAIITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            14513..14986
                     /locus_tag="OQQ72_002115"
     CDS             14513..14986
                     /locus_tag="OQQ72_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HCS2011843.1"
                     /translation="MGVIEFLFALTQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTRGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            15094..15633
                     /gene="dnaT"
                     /locus_tag="OQQ72_002116"
     CDS             15094..15633
                     /gene="dnaT"
                     /locus_tag="OQQ72_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HCS2011844.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            15636..16373
                     /gene="dnaC"
                     /locus_tag="OQQ72_002117"
     CDS             15636..16373
                     /gene="dnaC"
                     /locus_tag="OQQ72_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HCS2011845.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            16422..16916
                     /locus_tag="OQQ72_002118"
     CDS             16422..16916
                     /locus_tag="OQQ72_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HCS2011846.1"
                     /translation="MMETVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLNSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            17170..19461
                     /gene="opgB"
                     /locus_tag="OQQ72_002119"
     CDS             17170..19461
                     /gene="opgB"
                     /locus_tag="OQQ72_002119"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HCS2011847.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(19600..20622)
                     /gene="lgoD"
                     /locus_tag="OQQ72_002120"
     CDS             complement(19600..20622)
                     /gene="lgoD"
                     /locus_tag="OQQ72_002120"
                     /EC_number="1.1.1.414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-galactonate oxidoreductase"
                     /protein_id="HCS2011848.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGLQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
     gene            20761..21675
                     /locus_tag="OQQ72_002121"
     CDS             20761..21675
                     /locus_tag="OQQ72_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313344.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS2011849.1"
                     /translation="MSRSQNLRHNVINQVIDDMARGHIPSPLPSQSALAEMYNISRTT
                     VRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSEQNKVFEQAFFTLINQR
                     QLRPGETFSELQLARAAGVSPVVVREYLLKFGRYNLIQSEKRGQWSMKQFDQSYAEQL
                     FELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHRLLRDNIGNSFRMFSQLDRDFHS
                     LLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLD
                     ATLALRNHLNSAKQSMIRSINENTRYAH"
     gene            21890..>22349
                     /locus_tag="OQQ72_002122"
     CDS             21890..>22349
                     /locus_tag="OQQ72_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2011850.1"
                     /translation="MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM
                     LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD
                     RKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVK"
BASE COUNT         5524 a         5842 c         5530 g         5453 t
ORIGIN      
        1 aatggctgga gctggaaggc gcgaaagatc ttgatgacgc actctctctg ctgaccattc
       61 tttaccacca cgtaccgtcg gtcacatcga tgccggtcta cctagggcaa ctggatgcgt
      121 tgttgcaacc gtatgttaga attctaacac aagacgagat cgatgttcga ataaaacgtt
      181 tctggcgtta cctcgacgga accctgccag acgcctttat gcacgccaat atcggcccgt
      241 ctgattcgcc cattacccgc gcgatcttac gtgcagacgc agagttgaag caggtttcac
      301 cgaacctgac ctttatctac gatcctgaaa tcccccctga tgacctgctg ctggaagtgg
      361 cgaagaacat ctgtgaatgt agcaaaccgc acatcgccaa cggtccggtg catgataaaa
      421 ttttcacaaa agggggctac gggattgtga gctgttacaa ctcactgccg ctggcgggtg
      481 gtggcagcac gctggtacgc cttaacctga aagccattgc cgagcgcagc gaatcgctgg
      541 atgacttctt tacgcgcact ctaccgcact actgccagca gcagatcgcc atcatcgatg
      601 cgcggtgtga attcctctat caacaatcac acttctttga gaatagcttc ctggtgaaag
      661 aagggctgat taaccctgaa cgttttgtgc caatgtttgg catgtatggg ctggcggaag
      721 cggttaactt gctgtgtgag aaagaaggga ttgccgcgcg ctacggtaaa gaagccgccg
      781 caaatgaagt gggttatcgc atcagcgcgc aactggcgga gtttgtcgcc aatacccccg
      841 tgaaatatgg ctggcaaaaa cgcgccatgt tacacgcaca gtcggggatc agttccgata
      901 tcggcaccac gccgggcgcg cgtttgccgt atggcgatga gccagatccg atcatccatc
      961 tgcaaactgt cgccccgcat catgcttatt attattccgg catcagcgac attctgacgc
     1021 tcgacgaaac catcaaacgt aatccgcagg cgctggtaca gctttgcctc ggtgccttta
     1081 aagccggaat gcgtgaattt accgccaatg tcagcggtaa cgatctggtt cgcgttaccg
     1141 gttatatggt gcgtttgtcg gatttagaaa aatatcgcgc cgaaggttca cgcaccaaca
     1201 ccacctggct gggcgaagaa gccacacgca acactcgtat tctggaacgc cagccgcgcg
     1261 tgataagcca tgaacagcag atgcgcttta gtcagtaaga ttatcccctt ctcctgcgtt
     1321 gacgggccag gcagtcgtct ggctctgttt ctgcagggct gcaatctgcg ctgcaaaaac
     1381 tgtcacaatc cgtggacgat gggacgctgc aatgattgcg gagagtgcgt gccacagtgt
     1441 ccgcatcagg cgttgcagat tgttgacggc aaagtgctgt ggaacgctgt ggtctgcgag
     1501 cagtgtgata cctgcctgaa gatgtgtccg caacatgcca cgccaatggc gcaatccatg
     1561 agcgtggacg aagtgcttag ccatgtccgc aaagcggtgc tgtttattga agggataacg
     1621 gtaagcggcg gcgaagccac gacccaactg ccgtttgtag tggcgctgtt tactgctatc
     1681 aaaaacgatc cgcaactgcg ccacctcacc tgcctggtgg acagtaacgg catgttgagc
     1741 gaaaccggct gggaaaaatt actcccggtg tgtgacggcg caatgctcga tctcaaagcg
     1801 tgggggagcg aatgtcatca acacttaacc ggacgcgata atcagcagat taagcgcagc
     1861 atctgtttgc ttgcagagcg cggcaagctg gcggaactgc gtttgctggt aattccagac
     1921 caggtggatt atttgcatca catcgatgag ctggcgacgt ttatcaagag acttggcgat
     1981 gttccggttc gcctgaatgc gtttcatgcc cacggcgtgt atggcgaggc gcaaagctgg
     2041 gcgagcgcca cgccggaaga cgttgagccg ttggctgatg cgttaaaggt gcgcggggtg
     2101 agccggttga tatttccggc gctctatttg tgacatgccg gatacggcct acggttcggc
     2161 acagacttgt aggcatgata agacgcgaca agcgtcgcat caggcattgt gcgccaactg
     2221 ccggatgcgg cgtgaacgcc ttatccggcc tacggttcgg cacaaacctg taggcatgat
     2281 aagacgcgac aagcgtcgca tcaggcatta tgcgccgact gccggatact gcctacgaag
     2341 ggtaaactac ccactaacgc taaacaacgc atacgtatta ttaagcaaca cttcggcaat
     2401 ctcatcttct ggttccgggc gcaactcgca aagcacgtca aacacccgca cagcctgttc
     2461 cggtcggtta ggctgcccct gaaagccgtt gagcggcata tccggcgcgt cggtttccag
     2521 caacaacgat gccagcggta attttgcgat gacatcgcgg gttttactgg cgcgtggata
     2581 ggtgatagta ccgcctacgc cgattttgta gcccagctgt acaaaccgct cggcctgttg
     2641 caggctgccg gaaaaaccgt gaaccacgcc agtgcgcgat aaatcgtggc gtttaagatg
     2701 catcgccagt ttgtcgtgtg tgcgccgtga atgcaggatc agcggcagat cgtagcgttt
     2761 cgccagtttc agctgttcgt cgagtaacca ctgctgcctc tcaagttgcg gatcgtcgcc
     2821 gaagagatcc agaccgacct cccccactgc caccaccttc gccggacgcc tttccagcgc
     2881 ctgctgtagc tgctcaagag acacatcgct atgtttttcc aacatacctg gatgcaagcc
     2941 caatgcggca tacagcggtt gatatttttc cgctaacgcc tgcacacggg caaaattttc
     3001 cgcctctgtc gccggaacaa tgatcttgcc tacgcccgct tgtgccgcgc gttgcaggct
     3061 ggcctcttca tcgccactaa acggcaggaa atcaaaatgg cagtgggtgt cgataaaacg
     3121 gcaaatcaag ccagatcctc attgttaaat gtcgggtcgt tcgcctgcgg agcgtcaatc
     3181 acttcggcaa ccagcgtatc gttggcgact ggcgcaggcg gaataacgat cgattccggc
     3241 gtcaccactg gcaccagatg gcgggtaagc ggcgcttttt cagttaatag cttgccaacc
     3301 gtggcgagga aataacaacc gcataaacgc ccaagtttat agtcttcacg cagcgccgga
     3361 atccgactgc caagcgcgat actatgtaat ggcttcggcg gataaatttc gaatatccgc
     3421 agcttgcccg gtggtttctc aataaattgc tgaatgtcac gatagctggt ttcatgatgc
     3481 tgcaccagat tgaccagcgg ctgcaggcta ctgtcaccca gccagcgttc catgcgtttg
     3541 aaccactgcg gcgtgtagta catttgtgac ggcacagtgc gaatgacgac caacgtttta
     3601 gcgccctgcc ttgccgcctc tttaaccgga atcgcatcac tgatcccgcc atccaggtag
     3661 ttaatgcctt ccagcgacac tccgctacga taaaagccag gtatcgcact ggaggcgcga
     3721 atcacatcca gccagttttg tttggttggt aaaaagtaat taggcgcgta gtcatcctga
     3781 cgacaggcgc acatataaaa cgatttgccg ctgtcaaaca accgcgcggc ggtatccatt
     3841 tgcaacggca tctggcttgc ggtggcctcc accagccagt cgagatcgat aagatttcct
     3901 ccacggacaa agcgcaatgg atcgaaaaat tcgcgttttg tggtatagcg catgatgact
     3961 ttacgcgcgt aaccgggctg attgcagata aacgccgaga ggttctgcgc cccggcagat
     4021 gtgccgagat aaagatcgaa aggattaaac tgcgcgcgca taaactcatc cagcacgcca
     4081 gccgtgaaaa ttccacgctg tccgccgcct tcgcacacca gagctattcg tccaggctgg
     4141 aacggcctta gcgacaacgg cgcaatatta ccaagcgtta caggtattcg ctgccccacc
     4201 tctgccttcc tgtttttgtt gtgaaagaat gacaaagtaa cgcaatttat tattcgctaa
     4261 aaccgcaaaa gccagtccgc tggactggct ttggataaaa ttttcttaat ggtctgaaat
     4321 ctagggtcgt tttcggccca tgaacaaact caccaggaac agaataatcc cgacgacaaa
     4381 gacaatttta gctgcgcctg cagcggtacc ggccaaacca ccaaacccaa gtgcggcggc
     4441 gattaacgcg ataaccagaa atatgatgcc ccaacgaaac ataagcgtct cctttaccat
     4501 agttaatgtc accgcttgat atgagcgtga aaatcactca atgcgatatt tttagtgtgg
     4561 tgcacatcgc gcctcccgac aaagttcggg aggacgaatt acgacgaatt acttagtttt
     4621 cagatcattt ttaacgcttt tcacaccatc taccgctttg gcgatacttt cagcacggtc
     4681 actttgtgcc tgagaatcta cggtaccgga gagctgaacc acgccgtcgg tggtttcaac
     4741 tttcacatga cgggaaggga cgatatcgtc cgccagcagt ttggctttga tttcactggt
     4801 ggtggcggtg tcacccgcgt agcccttcac cgagccttct ttagcgtcgc gaacgtgcag
     4861 tttgtcgctg acagaggtca ccccttcaac gcctttcgcc actttcactg cctcttcggc
     4921 ctgagcctag ctttcaacga aaccgctcag ggtcacgact ttttgctcgg ttttgacaga
     4981 gatatcggtg ctcttgatgt tgtcatgatc caccagcgcc gccttcactt tcgcggtgat
     5041 ggcgctgtca tccatgaaat taccgacttt attcatagag ctatcgactt tttgccctgc
     5101 gctttcattg gtagtctgtg cgttgttttc cgcgtaggca gagccggtcg cgacggcaga
     5161 ggtcaacatt acagccagca gagttttcga aatcttcagt cttgtcatag tcatcgattt
     5221 attcctgtat gtttgctcgt aatttgagcc tggcaacacg aggttgcatt gctgaatagg
     5281 gagagacttc accctctaca gaagtcaatg gccgccatca caaaagcgat gggtgatgaa
     5341 taacgaccat tacagcctct gaatcagtta ttaatatcgg tagaatgaca atcgacggct
     5401 ttagatactg atatctacgc attgaacggt atttaacgcc gtcagaaatg tcattacttt
     5461 gttaaatata gatcacaatt ttgaaaccgc tcgtgatatc agcgaaaaca taagcaaaag
     5521 tgaatgtttt aagaacattc cgtaagcggc taataaggaa gggaaattga cagggcgcag
     5581 cggctaccgc gccctggagg caagaattaa tgctcgcggg tctggtggaa ctgaacgtcg
     5641 ggataacgtt cctgcgccag gcgcaggttg accatgctgg tagcgatgta agcgaggtta
     5701 tcgccgccat caagcgccag ttggctttcg ttcttacgct tgaactcttc gaatttcttc
     5761 gcgtccgcac attctaccca gcgggcagtg gcaacgttga ctgattcata tactgcttca
     5821 acgttgtatt cgctcttcag gcgcgatacc accacatcaa actgcagcac accaacagca
     5881 ccaacgatca aatcgttgtt ggagatcgga cggaacacct gcaccgcgcc ctcttcggaa
     5941 agctgtacca gccctttgag cagctgtttt tgcttcagcg gatctttcag gcggatacga
     6001 cggaacagtt ctggtgcgaa gttcggaata ccggtgaact tcatcatctc accctgggta
     6061 aaggtgtcgc cgatctgaat agtgccgtgg ttgtgcaggc cgaggatatc gcccggatac
     6121 gcttcttcaa cgtgcgaacg gtcgcccgcc ataaaggtca gcgcgtcgga gataaccaca
     6181 tctttcgcag tacgcacctg gcgcagcttc atgccttttt catatttacc ggatactacg
     6241 cgcataaacg ccacgcggtc gcgatgtttc gggtccatat tggcctgaat tttaaatacg
     6301 aagccggtaa atttgtcttc gctcgcctct acggtacggg tatcagtctg acgcggcatc
     6361 ggcgcagggg cccactccac caggccatcc agcatatgat caacgccgaa gttacccagc
     6421 gcagtaccga agaataccgg agtgatttcg cccgcaagga acagttcttt gtcgaactcg
     6481 ttagacgcgc ctttcaccag ttccagttcg tcacgtagct gctgtgccag atcttcacca
     6541 accgcagcgt cgagatccgg gttattcagc cctttaacaa tacggacttc ctgaatcgtg
     6601 tggcctttac cgctctgata aagataggtt tcgtctttat aaaggtggta aacgccttta
     6661 aacagcttgc cgcagccaat cggccaggtg atcggtgcgc agccaatttt cagctcgttc
     6721 tcaacttcat cgagcagttc catcgggtcg cggatatcac ggtcaagttt gttcataaag
     6781 gtgaggatcg gcgtgtcgcg cagacgggta acttccatca gcttacgggt acgatcttca
     6841 acaccttttg cagcgtcgat aaccatcagg cagcagtcca ccgctgtcag ggtacgatag
     6901 gtatcttccg agaagtcttc gtgccccggg gtgtctagca ggttaaccag gcaatcgtga
     6961 tacggaaact gcatcacaga cgtagtaatg gagatcccac gctgcttttc catctccatc
     7021 cagtccgact tagcgtgctg gttggaacca cggcctttta ctgtaccagc ggtctgaatg
     7081 gcctgtccga acagcagcac cttctcggtg atggtagttt taccggcgtc cgggtgagaa
     7141 ataatggcaa aagtgcggcg cttcgccacc tcttgcaaat aaggagacaa cgtcataatt
     7201 ctttcttctt gagtaagcgg catcgcgccg cgcttgttga aaacgaaaaa ttgcggctat
     7261 tttacccatc aacggggggg aggcaatcag tgtttacaca ggagctgctc cagttcgtgc
     7321 aacgatgaaa cggtccaggt gggcgcgatg ccttctggtt gctcgagatg gtgcgcattc
     7381 agccagcaag tcgcaagccc ggcgttgatg ccaccgagaa tatcggactc ggcagtgtcg
     7441 ccaaccatca gcacgcgtga acggtcagga ttgcccgcca gttccagcgc ataatcgaaa
     7501 attttcttat tcggtttggc aatgccaact tcttcggaaa tcaccagcaa atcaaagtaa
     7561 tcacgcaggc ccgtccgttc cagacgcact tgctgcaagg cgctaaaacc gttggtgatg
     7621 atgccgattt tagcgttgcc acgaatggcg ttaagcagag aaaccgcgcc cggcagcggc
     7681 gtgcagattt ccgccatcgc attaataaag gcatcgttaa gcaagcctgc ttcaactttc
     7741 agccgttcgg cccagctctc gaaacgcccg tgctgaagct gtaatgaagt gatcgcgccg
     7801 ttttgataat ccacccacag tggcttgtta acggcctgat agtcctgaaa atcttcagcg
     7861 gtaaaggtga cgctgtaatc aagaaacatc cgctgcaggc cggtgaatga gtcaaaggta
     7921 aacagcgttt catcggcatc aaagaaaatc cagtcccact tcattattcc accttgtctt
     7981 acatactgat tggcaacgcc atgatgatgg cgtcttcgcg accgtccgtg gtggggtagt
     8041 aattgcggcg aatcgtcgcc tcgttaaagc ctaaactttc gtacagggca atggcggcag
     8101 cgtttgaagc acggacttcc agccatagtg tcgccacgcc gcgtttttcc agttcgtcga
     8161 tcagatgttt cagcagcacc cttcccaatc cctgacgctg atagtcagga tcgaccacaa
     8221 tattgaacaa tgtagcttca tccagcacca cttgcgtaat agcaaacgcc gccattttgc
     8281 cgttttgcgt taactgaaag ttgagataac gctcgccctg gttgctggca aagttttttt
     8341 cactccacgg aaaggcgtgg gcgcgttgtt caatgtggta agccgctggt aaatcagtcg
     8401 tttcgaggga agaaatcgtg ttcatatgtg caaatctgtt gccataacgc ggcgcgtgcc
     8461 gttgggtttg cccgtaattc ggtgagcgcc ggtgatgcca cctgagcgcc ttccagtgat
     8521 agcggttcgt cagtacccaa ccgccagctg ttgcagcgac tgccttgcgg cagcatcgcg
     8581 attttttctg gcgtcagttg cagcacttga tcggggctga cggttaatgc gcgcagaaca
     8641 tcgctcacta aaggatcggt cagggcggga agatcgtttg ccaccatcac cagacggacg
     8701 tgtgccggga tcgcaatggc aatctccccc tgcaacgcgc cagggcgacg cagcgaccac
     8761 tgggtaatgc ccagttgctg taactgccag tctcgtcggg atgtcatagc gaatcgctcc
     8821 tgttgtcagg ggcgcaaata tagcaaattc gtcgataccg cgccaacata tggctataat
     8881 cgccgccagt atcaattgag gagcattcca tgtctgcatt taccccggca agtgaagtct
     8941 tgctgcgtca cagtgatgat ttcgaacaaa gccgtattct gtttgccgga gacttacagg
     9001 atgacctgcc cgcgcgttta gataccgcgg ccagccgtgc tcatacccag caattccacc
     9061 actggcaggt attaagccgc cagatggggg ataacgcccg tttcagtctg gtcgccacgg
     9121 tggatgacgt cgcagattgc gatacgctga tttactactg gccgaagaac aaaccggaag
     9181 cccagttcca gttgatgaat ttactttctc tgctgccagt ggggacagat atttttgtcg
     9241 ttggcgagaa ccgcagcggc gtgcgcagcg ccgagcagat gctggcagat tatgcgccgt
     9301 tgaataaagt cgacagcgct cgtcgctgtg gcctctattt tggtcgtctg gaaaaacagc
     9361 cggtatttga tgccgataaa ttctggggcg aatacagcgt cgatggcctg acggtcaaaa
     9421 cgctgcctgg cgtgtttagc cgcgacggtc tggatgtcgg tagccagttg ctgctctcga
     9481 cgttaactcc gcacacgaaa ggtaaagtgc tggatgtcgg ctgtggcgcg ggggtgcttt
     9541 cagttgcctt tgcgcgccat tcgccgaaaa ttcgtctcac cttgtgcgat gtctctgcgc
     9601 cagcggtaga agccagccgc gcaacacttg cggccaactg tgttgaaggt gaagtctttg
     9661 ccagcaacgt cttttccgag gtgaaaggtc gttttgatat gatcatctcc aacccgccgt
     9721 tccacgatgg gatgcaaacc agcctggatg cggcgcaaac gctgattcgc ggcgcggtgc
     9781 gtcatcttaa tagtggcggc gagctgcgaa ttgtagcgaa cgccttcctg ccttatccgg
     9841 acgtgctgga tgaaacattt ggcttccatg aagtgattgc gcaaaccggg cgtttcaagg
     9901 tatatcgcgc cattatgacc cgccaggcga aaaaaggtta agtatcccgc cgcaagcctt
     9961 gccggatgcg gcgtaaacgc cttatccgac ctacaaaacc tgcacgttag cccttcgtag
    10021 gccagataag acgcgccagc gtcgcatctg gcatctgccc ccgcatgcct accaaacctg
    10081 cacgctagtt tcctgatgga catttttcca gcaattacac ctccggcgat aattaactat
    10141 tgacgaaaag ctgaaaacca ctagaatgcg cctccgtggt agcaattctt tttaagaatt
    10201 gatggtatgc gaaggtggcg gaattggtag acgcgctagc ttcaggtgtt agtgtcctta
    10261 cggacgtggg ggttcaagtc ccccccctcg caccaaaaac cacgttgata ttgctcgcac
    10321 tgggcgaagg tggcggaatt ggtagacgcg ctagcttcag gtgttagtgt tcttacggac
    10381 gtgggggttc aagtcccccc cctcgcacca aacgaggcga tatcaaaaaa aagtaagatg
    10441 attgtgcgaa ggtggcggaa ttggtagacg cgctagcttc aggtgttagt gtccttacgg
    10501 acgtgggggt tcaagtcccc cccctcgcac caattatctt tacttccttt cttgtttctt
    10561 ccttgatttt tcatccctga ttcaaattca ttatcatcag catgatggca gcaataagcg
    10621 ccaggcacga tggtagcaaa acgtaatgcc gtaactgttt gtgatacagc atcaccggcg
    10681 tcaatactaa tcccatcaga atgacaatcc gccactgatc cggcgataaa tccgcataca
    10741 tcagccctgc aatcagcaat cccggcagca acactcccca gccactgccc agcgtacgtt
    10801 gcaacatggt ttcatctctt tcattgataa tgataactaa tatcatatga taatttttat
    10861 catttgcaag ccagagaaat cccttgctat cgggtaaacc tatcgctagg attagcaatc
    10921 attatcattt agattactat cccgattatg gcctatcgtt ccgcaccgct ctatgaagat
    10981 atcatctggc gaacgcatct ccagccgcag gatgctgggc ttgcacaagc cgtacgtgcg
    11041 acgatcgcca aacatcgtga acatttgctc gagtttatcc gcctggatga acccgctccg
    11101 cttaacgcca tgacgctggc gcaatggtca tcaccgaatg cgctaagttc tctactcgcg
    11161 gtctattccg atcatatcta tcgcaaccaa ccaacgatga tccgcgagaa caaaccgctg
    11221 atctcactat gggcacaatg gtatatcggc ctgatggtgc caccattaat gctggcgcta
    11281 ctgacgcagg aaaaggcatt agatgtgtcg ccggaacatt tccatgctga gtttcacgaa
    11341 accggacgcg tcgcctgttt ctgggtcgat gtgtgtgaag ataaaaacgc aacaccacat
    11401 tcgccgcagc agcgaatgga aacgttaatc agccaggcgc tggttccggt tgtgcaggca
    11461 ctagaagcga ccggagagat caacggcaaa cttatctgga gtaataccgg ttatttgatc
    11521 aactggtatc tcactgagat gaagcaactg ctcggcgagg cgacggttga atcgctgcgc
    11581 catgccctct tttttgagaa aacgctcacg aacggtgaag ataatccact ctggcgtacc
    11641 gtcgtgctgc gcgatggcct gctggtgcgc cgaacctgct gccagcgtta tcgcttaccg
    11701 gatgtgcagc aatgtggcga ttgtacgctg aaatgaaagc actgccgggg aagtaaaccc
    11761 ggcatcatgc ggattaatag ggatgcaaca cattacttgc ttcgcaatgc cgcatacata
    11821 acagaatatc tgcggcctcc aacacccctg catcagaact gacgcccagt ttcgacatca
    11881 cattaaattt atgtgcacgg atcgttttga tattgcgttt aagctgctcg gcaatttgtg
    11941 tcattgagta gccacgcgac ataaagcgca atatttctct ctccgtcggg cttagcgtcc
    12001 ggctttggtt aatgtaccac tgattgttca gtcggtcggt cgcctgacgt acaccattta
    12061 atgacaaaaa gagttcctga tgaaaaatct ccagcgttga cgctttactt aatacaccgt
    12121 ccagcggtga tggcgacaat gaaccaatca gccgagcttc aatatcatca tccgcaataa
    12181 ctaaacgccg ggtacgcgga aacttaatcg ccagttcagt caggcaagat aatccctctc
    12241 tgcgctcact tctcatggca gaaaaagaaa aatgaccgcc gcaaatgaga tccgcgacat
    12301 ggcatcctga aatgactcct gactggtata ggtatggagc ttataagggt tacccgcaaa
    12361 ctttctgaat aaactctcaa taccgatact gctcatgacg catttttcta tgagtgcgac
    12421 atttctcttc ttaattcggc tgtgttccat tctgcggcat ctccataaac agaaggcaag
    12481 ttaagttctc ttgcaccctg cgcgctattt atccatgcat acatttcagc gttgctgtga
    12541 attgccagtc gacgcatcgc actgtttttt tgggcgctga tagttttatt acttttctta
    12601 agcaacgaaa ctatctggtt gatgccccat cctttaccta atagccgcag taccttgcgc
    12661 tctgaaagag tgagaatgac ggagcgatag ctaaaatcat gagtttcatt cattgccgga
    12721 gaggtcagca tggcgctgat acgctctgcg tgcgtattgc cggaacgtac ggtcttgacc
    12781 agattctcaa tgggttcaac atcagacaat aacgtcgccg tagggcacat gagcaattct
    12841 actgcctggg aataccagga gcgtgacacc atgaaaaccc agtgaatttc ccgatattgt
    12901 gagattaaag aataataatg ttcacaaaca gaacgtggat cttcactttc accggctaaa
    12961 tcagcaatga ctaatccgga acgacgtaat tgtaataagg taaagtcctc cgcagaggcg
    13021 ctggatatta tttcatattc agggaagtga gtcctcatga cctcttttaa ccctgcttgc
    13081 ataacaggta ttttactgat aacaattcca tttttgcagc atcctggcaa catatttcct
    13141 ccacatccac tgtctaaaaa tcatgatggt ttattcagga tattcattcc ttaaatgttt
    13201 ccagcaaatt aatagattaa gcgaataaat tatccttagc attcactttc atatcagcat
    13261 actcctgctg cacaacaact ccactgcatg tgtcagaagg ttagcatcaa atgataacct
    13321 ggtgaaatag cctggagaca tttaaaatat ctacattaag ttgttaggaa tacttaatga
    13381 aaaacagaaa tcacattcat ttaatttata attaaatgat atcccttccc gcagaatgaa
    13441 aagtcacaca accaatattt attcaatgaa atctgatggt tttaacttgt taacattaaa
    13501 aaacgtgccc ggttatctat tatcctgatt cgtaaaggcc aaacaataaa ttcattatag
    13561 tgataatatt catgtgatag tttgtttgcg gcgagagata attcgctttt tatcaccgag
    13621 cttgtcccga taaccaggat taatcagcgc aattttgatc ttaacctacc gcaaaacaac
    13681 cgtgcttcat gatacaaatg gattctcatt atctgaacaa tacgcagcac gtctatgaca
    13741 aagggcgagt tatgcaaact gagcaacagc gagccgtaac acggctttgt atccagtgtg
    13801 gattatttct tttgcaacat ggtgcggaaa gcgcgttggt tgatgagctt tcctcacgac
    13861 tgggtcgggc gttggggatg gacagcgtcg aaagttctat ctcttcgaac gccatagtgc
    13921 tgacaaccat taaagatggg caatgcctga catcgacacg taaaaatcac gatcgcggca
    13981 ttaatatgca tgtggtgact gaagtccagc acattgtgat tctggcggag caccatctgc
    14041 tggattacaa aggcgtagag aaacgattta gccaaattca gccattacgt tacccaagat
    14101 ggctggtagc cttaatggtt ggcctttctt gcgcctgttt ctgcaaactc aataaaggtg
    14161 gctgggatgg tgccatcatc accttctttg ccagtacggc cgcgatgtat atccgccagc
    14221 tgctggcaca acgtcatctt catccgcaga tcaacttttg cctcaccgct ttcgccgcca
    14281 ccaccatttc cggattgctt ttgcaacttc ccactttcag caatacaccc actatcgcga
    14341 tggccgccag cgttctgctg ctggtgccgg gatttccgtt gattaatgcc gtcgccgata
    14401 tgtttaaagg ccacatcaat accggactgg cacgctgggc gatcgccagt ctgctgacac
    14461 tggctacctg cgtcggcgtg gtgatggcac tgacgatttg ggggctacgc ggatgggtgt
    14521 gatcgagttt ctgtttgcat tgacgcagga tatgatcctc gccgccattc cagcggtcgg
    14581 ctttgcgatg gtgttcaacg ttcccgttcg ggcattacgc tggtgtgcgc tgcttggcgc
    14641 gattggtcat ggttcacgaa tgatcttaat gaccagaggg ctgaatattg agtggtcaac
    14701 ctttatggcc tccatgctgg tcggcaccat tggtattcaa tggtcgcgct ggtatctggc
    14761 gcatccgaaa gtgtttaccg tggcggctgt tatccctatg ttcccgggca tatcggctta
    14821 taccgcaatg atttcggcgg taaaaatcag ccagttaggt tacagcgaac cgttgatgat
    14881 taccctgtta accaactttc ttacagcttc atcgattgtt ggtgcgttat ccatcggtct
    14941 ttccattcct ggattatggt tgtaccgcaa gcgccctcgc gtataaaatt gcctcgctta
    15001 aagcacacgg atgagagaca gcctcctctc ctccgtgtgt tactataaaa gttatctccc
    15061 ttctcgttca tcgttccata tttgagaaac agtatgtctt ccagagtttt gaccccggac
    15121 gtcgttggta ttgacgccct ggtacacgat caccaaaccg ttctggcaaa agctgaaggc
    15181 ggtgtggttg ccgtatttgc taacaatgcc ccggcgtttt atgccgtcac gcctgcacgc
    15241 ctggctgaac tgctggcgct ggaagaaaag ctggcgcgtc cgggaagcga tgtcgctctg
    15301 gacgatcaac tctatcagga accgcaagcc gctcccgttg ctgtacccat ggggaaattc
    15361 gccatgtatc cggactggca acccgatgcc gattttatcc gcctggcggc gctatggggt
    15421 gtggcactaa gagagccggt gaccaccgaa gaactggcct cattcattgc ctactggcag
    15481 gcggaaggta aagtctttca ccatgtgcag tggcaacaaa aactggcgcg cagcctgcaa
    15541 atcggtcgtg ccagcaacgg cggactgccg aaacgagatg tgaatacggt cagcgaacct
    15601 gacagtcaaa ttccaccagg attcagaggg taacgatgaa aaacgttggc gacctgatgc
    15661 aacgcctgca aaaaatgatg cctgcccata tcaaacctgc attcaaaacg ggtgaagaac
    15721 tactggcctg gcagaaagaa caaggagcga tccgctccgc cgctctcgaa cgtgaaaatc
    15781 gggcgatgaa aatgcagcgc acctttaacc gctccggtat tcggccactg catcagaact
    15841 gctcctttga gaactatcgc gttgagtgtg aagggcagat gaatgcgtta agcaaagcgc
    15901 gccagtacgt cgaagagttt gacggcaaca tcgccagctt catcttttct ggtaagccag
    15961 gaaccggcaa aaaccatctg gcggcggcaa tctgcaacga gctgctgcta cgcggtaaat
    16021 ccgtattgat catcaccgtg gccgatatta tgtcggcgat gaaagatacc ttcaggaata
    16081 gcggtaccag tgaagaacaa ctgcttaacg atctgagcaa cgttgatctg ctggtgatcg
    16141 atgagatcgg cgtgcagacc gaatcgaaat acgaaaaagt gatcatcaac cagatcgtcg
    16201 atcgccgctc ttcttccaaa cgcccaaccg ggatgctgac caacagtaat atggaagaga
    16261 tgaccaagtt gctgggcgaa cgcgtgatgg accgtatgcg cctgggtaac agtttgtggg
    16321 tgatcttcaa ctgggatagc taccgtagcc gggtaacagg taaagagtat taatccccgt
    16381 ttctggcggt atactgcgac acaattccac cttgagtaat gatgatggaa actgttaaac
    16441 atcttctgtg ctgtgccatt gccgccagcg cattaatttc caccggggtg catgctgcgt
    16501 cctggaaaga tgcgctctcc agcgccgcca gcgaacttgg caaccaaaac agcacgacac
    16561 aggaaggcgg ttggtcgctc gcgtcattaa ctaacttgct taacagcggg aaccaggcct
    16621 taagcgcaga taacatgaac aacgccgcag gcattctgca atactgcgcg aagcaaaagc
    16681 tggcgtcggt aaccgatgcc gaaaacatca agaaccaggt gctggaaaag ctgggcctga
    16741 acagtgaaga gcaaaaagaa gacaccaact atctggatgg cattcagggt ttgctgaaaa
    16801 ccaaagatgg tcagcaactc aatctggata acatcggaac gactccgctg gcagaaaagg
    16861 tgaaaaccaa agcctgcgat ctggtgttaa agcaggggct gaacttcatt tcctgaaccg
    16921 cgaaacgccg cgttttagct gttacccggc tgacgcggct ctctcctgcc cttttccctg
    16981 cttctggacg gttttccccc tgttacacgg gaagcgaccg cgatcaaaaa agtctgttta
    17041 taaactaatt cctaacaaca tcgcattttt ttgacactag aattgcagca atatggcgac
    17101 gccattacat tgttcttctc aaaaagctta aacgttggct aaacggcccg gtttagtgag
    17161 gatcgcccgt tgtcagaact actctctttc gccctttttc tcgcctctgt gctgatttac
    17221 gcatggaaag cgggacgtaa cacctggtgg tttgcagcca cattaacggt gctggggcta
    17281 tttgtcgttt taaatatcac cctgtttgcc agcgactatt ttactggcga tggtattaac
    17341 gacgcggttc tctatacctt aaccaacagc ctgaccggtg ctggcgtcag caaatacatc
    17401 ctgccgggta tcggcattgt gctggggctg acagcggtgt tcggtgcgct gggctggatc
    17461 ctgcgccatc gtcgccatca tccgcaccat tttggttaca gcctgctggc gctcttactg
    17521 gcgctgggtt cggtggacgc cagcccggca tttcgtcaga taacggaact ggtgaaatcc
    17581 cagtcacgcg atggcgaccc ggactttgcg gcttattata aagagccgtc gaaaactatc
    17641 cctgacccga aactcaacct ggtttatatc tacggcgaaa gtctcgagcg gacctatttt
    17701 gataacgaag ctttcccgga tctcacgcct gaactgggcg cgttgaaaaa tgaaggcctg
    17761 gatttcagcc acacgcagca gctgccagga acggattaca cgattgcggg catggtggct
    17821 tctcagtgcg gcataccgct gtttgccccc tttgaaggca acgcctccgc ctctgtctcc
    17881 agcttcttcc cgcagaacat ctgtctgggc gatatcctga aaaactcggg ttatcagaac
    17941 tatttcgtgc agggcgcgaa tctgcgtttt gccggtaaag atgtgttcct gaagtcgcat
    18001 ggcttcgacc acttatacgg ctcagaagag ctgaaaagcg tggtggccga cccgcactat
    18061 cgcaacgact ggggattcta cgacgatacc gttctcgatg aagcgtggaa aaagtttgaa
    18121 gagctttccc gctcaggtca gcgattctca ctgtttaccc tgacagtcga tacccatcac
    18181 ccggatggtt ttatctcgcg tacctgtaac cgcaaaaaat atgattttga cggtaagccg
    18241 aaccagtcat tcagcgcggt aagttgcagc caggagaata tcgcggcgtt tatcaacaaa
    18301 atcaaagcgt caccgtggtt taaagatacc gtcatcgtcg tctcttctga ccatttagcg
    18361 atgaacaaca cggcgtggaa atacctcaat aagcaggatc gcaataacct gttttttgtc
    18421 attcgtggcg acaagccgca gcaagagacg ctggcagtga agcgtaacac gatggataac
    18481 ggcgcgacgg tgctggacat tctcggtggc gataactatc tcggacttgg tcgtagcagt
    18541 ttatccgggc agtcgatgtc ggaaatcttc ctcaatatca aagagaaaac attggcgtgg
    18601 aagccggata tcatccgcct gtggaaattc cctaaagaga tgaaagagtt caccatcgac
    18661 cagcagaaaa acatgattgc cttctcgggt agccatttcc gtttgccgct gctgttgcgg
    18721 gtttcagaca aacgcgtgga accgctgccg gaaagcgaat actcagcacc gctgcgtttc
    18781 cagctggccg atttcgctcc acgcgacaat ttcgtctggg ttgaccgttg ctataagatg
    18841 gcacaactct gggctccgga actggcactc tccaccgact ggtgtgtctc gcaagggcag
    18901 cttggcggtc agcaaattgt tcaacatgtt gacaaaacaa catggcaggg caaaacggca
    18961 tttaaagata cggtcatcga catggcgcgt tataaaggca atgtcgatac gctgaaaatt
    19021 gttgataacg atattcgcta caaagccgac agtttcatct tcaacgtcgc cggtgcgcca
    19081 gaagaggtga aacagtttag tgggatttcc cgtccagagt cgtggggccg ctggtccaac
    19141 gcgcagctgg gcgatgaagt aaaaatcgag tacaagcatc cgctgccaaa gaaatttgac
    19201 ctggtgatta ccgccaaagc atacggcaat aacgccagcc gtcctattcc ggtacgcgta
    19261 ggcaatgaag aacaaaccct tgtgctgggc aatgaagtga ccaccaccac actgcatttc
    19321 gataacccaa ccgatgccga cacactggta attgtgccgc cggaacctgt ctcaaccaac
    19381 gaagggaata tcctcggaca ctcgccacgt aagctcggga tcggcatggt ggaaattaaa
    19441 gtggtggaac gtgaaggata attcctgact gatgtgtagg tcgcataagg tgcgacctac
    19501 acaccttctg cggcctacaa aacatcattg agaaacagaa aaaaacagcg cccaacactt
    19561 ccccggacgc tgcatggcaa ctttaataat ctcgccttat cagaaagtaa ttacaccctt
    19621 aatcaactca cgattgttaa tcacatcgcg ctcgtaggtt tctgccagcg tggcgaacgg
    19681 atagcgatgg gttaacatca tgtcagcagt gatttttcct tccgccatca gtcgaccgac
    19741 tttagcaaaa tcttccggcg tggcgttgcg gctacccatc atcgtcgttt cttttttatg
    19801 gaattccgga tcggagaact gcaactcacc tttaaacagg ccgacaaata ccaccgtgcc
    19861 gccgtgacga atcaaattca cggtgttatt catcgcatgt tgattacctg tcgcgtcgat
    19921 cactttctgc gccagcgaac caccaaactg cgcccgtagc tgcgcgtcaa aatcttcggc
    19981 tgacgggtcc agtaaaggta attccagacg cgttgccaca tgttcacggc gcgccggact
    20041 ggtatccgcc accaccacct gtgcgccatc ggctttagcg attgccgccg cgcccagacc
    20101 gattggcccc gccccgacca ccagcacctg ctcgccggga gcaatggctg cgcgacgcac
    20161 cgcatgagcg ctaatagcga aaggttcaat caatgctgcc gcctgcgggt caataccgtc
    20221 tgcgggcaaa atgttcgcca ccggcacgct caaatactca ctaaaaccgc catcctgatg
    20281 cacgccaatg actgaaattt tttcacagca attggtacgc ccgcttttac acgccgggca
    20341 ttgctgacag gcaacataag ggatcacagc aacttgcaga ccatttttaa gatcagcaat
    20401 atttttaccc agcctaacaa tctccccaca tatttcatgg cctaaaacac gtggataact
    20461 aaaaaatggt tgatttccac cccaggcatg aatatcggta ccgcaaatcc cgacagactt
    20521 aatttttatt aatgcttcat tgtcacccgg aataggtatc tcgcgttgtt tccagactaa
    20581 ttctttcggc tgctggcaaa ttaaaacatt catcgtagac atgattcggc tctccatttt
    20641 ttgttgcctt agatatcaat gaaaatgaaa aatggcagcg gaacggaaaa tctgttttgt
    20701 gaaaacacac gcataaaaat gttttaaatc gggttttaat ggactcacaa ggaggaaaat
    20761 atgagtcgtt cacaaaattt acgccacaat gtgattaacc aggtcattga tgatatggcg
    20821 cggggtcata tcccttcccc acttccatcg caaagtgcgc tggcggaaat gtacaacatc
    20881 agccgcacca cagtgcgtca tattctcagc catttacgcg aatgcggcgt cttgacgcag
    20941 gttggaaacg actatgttat tgcgcgtaaa cctgaccacg atgacggttt cgcctgtact
    21001 accgcttcaa tgagtgaaca aaacaaagtg tttgagcagg cttttttcac gctgataaac
    21061 cagcgccagt tacgcccagg ggaaactttt tctgaactgc aactggctcg ggccgcgggt
    21121 gtcagcccgg tggttgtaag agaatatctt ttaaaattcg gccgttataa tcttattcaa
    21181 agcgaaaagc gcggccagtg gagcatgaag caattcgatc aatcctacgc cgagcagctg
    21241 tttgagctac gcgaaatgct cgaaacacat tcacttcagc actttctcaa cctgcctgat
    21301 catgatcccc gctggctgca ggcgaaaacc atgctcgaac gtcatcggct actgcgtgac
    21361 aacatcggca atagctttcg catgttctcg caacttgaca gagattttca ctccttactg
    21421 ctttcagctg ccgacaatat cttttttgat caatcgcttg agatcatctc agtcatcttt
    21481 cattttcact atcaatggga cgaaagcgat cttaaacagc gcaatatcat tgccgtcgat
    21541 gagcatatga ccattctcag cgctctgatt tgccgcagtg acctcgatgc cacccttgcg
    21601 ctccgtaacc atttgaattc agctaaacaa tcaatgattc gatccattaa tgagaacacg
    21661 cgttatgctc attaagtacg gattaaaaac agcaaactat tagcgggtgc acggttttat
    21721 caaaagataa ataccgggaa attcccgctt acctatgctc acaatcagtc gactaaaaat
    21781 gtttttgtga gcggtagtaa agtcctaaaa ctttaacctg ccgttaatgt caaccatgcg
    21841 taatgcacaa ttacgtaaac aattaaaatt ataaatacag gagtccggcg tggaaaaaga
    21901 aaatatcacc atcgatccgc gttcttcatt tactccatct tcgtcggcag atattcccgt
    21961 gccaccagat ggattagttc aacgcagtac ccgaattaaa cgcattcaaa ccaccgccat
    22021 gttgttatta ttttttgcgg cggtaatcaa ttatctcgac cgcagttcgc tgtcggtagc
    22081 aaatttaacg attcgtgaag aattgggatt aagtgccact gaaatcggcg ctttgctctc
    22141 cgtgttttca ctcgcttacg ggattgcgca acttccttgc ggcccactat tggatcgtaa
    22201 aggcccacgc ctgatgctgg gactgggaat gttcttctgg tcactgttcc aggcaatgtc
    22261 tggcatggtg cacaacttta cgcagttcgt gttggtgcgt atcggtatgg ggattggtga
    22321 agcgccgatg aacccatgcg gtgtaaaag
//
LOCUS       DAJVUY010000064        20907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.064, whole genome shotgun sequence.
ACCESSION   DAJVUY010000064 DAJVUY010000000
VERSION     DAJVUY010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.064"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ72_002123"
     CDS             complement(157..702)
                     /gene="hemG"
                     /locus_tag="OQQ72_002123"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HCS2011851.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
     gene            complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ72_002124"
     CDS             complement(714..2165)
                     /gene="trkH"
                     /locus_tag="OQQ72_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HCS2011852.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            complement(2204..2818)
                     /locus_tag="OQQ72_002125"
     CDS             complement(2204..2818)
                     /locus_tag="OQQ72_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HCS2011853.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGIGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ72_002126"
     CDS             complement(2818..4149)
                     /gene="pepQ"
                     /locus_tag="OQQ72_002126"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HCS2011854.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ72_002127"
                     /pseudo
     CDS             4339..6535
                     /gene="fadB"
                     /locus_tag="OQQ72_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418288.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
     gene            6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ72_002128"
     CDS             6545..7708
                     /gene="fadA"
                     /locus_tag="OQQ72_002128"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HCS2011855.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCN
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ72_002129"
     CDS             complement(7900..8601)
                     /gene="fre"
                     /locus_tag="OQQ72_002129"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HCS2011856.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ72_002130"
     CDS             complement(8647..10140)
                     /gene="ubiD"
                     /locus_tag="OQQ72_002130"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HCS2011857.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ72_002131"
     CDS             10307..10795
                     /gene="rfaH"
                     /locus_tag="OQQ72_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HCS2011858.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ72_002132"
     CDS             complement(10792..11574)
                     /gene="tatD"
                     /locus_tag="OQQ72_002132"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HCS2011859.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAVQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ72_002133"
     CDS             complement(11616..12392)
                     /gene="tatC"
                     /locus_tag="OQQ72_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HCS2011860.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ72_002134"
     CDS             complement(12395..12910)
                     /gene="tatB"
                     /locus_tag="OQQ72_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HCS2011861.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ72_002135"
     CDS             complement(12914..13183)
                     /gene="tatA"
                     /locus_tag="OQQ72_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HCS2011862.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ72_002136"
     CDS             complement(13262..14902)
                     /gene="ubiB"
                     /locus_tag="OQQ72_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HCS2011863.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ72_002137"
     CDS             complement(14899..15504)
                     /gene="ubiJ"
                     /locus_tag="OQQ72_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HCS2011864.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ72_002138"
     CDS             complement(15518..16273)
                     /gene="ubiE"
                     /locus_tag="OQQ72_002138"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCS2011865.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ72_002139"
     CDS             complement(16368..17795)
                     /gene="rmuC"
                     /locus_tag="OQQ72_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCS2011866.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ72_002140"
     CDS             complement(17936..18697)
                     /gene="udp"
                     /locus_tag="OQQ72_002140"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HCS2011867.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            18959..19771
                     /locus_tag="OQQ72_002141"
     CDS             18959..19771
                     /locus_tag="OQQ72_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS2011868.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGMHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ72_002142"
                     /pseudo
     CDS             20165..20825
                     /gene="hcp"
                     /locus_tag="OQQ72_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001680647.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT         5109 a         5638 c         5249 g         4911 t
ORIGIN      
        1 cttttctctg ttgagattct caggagaacc ccgctgaccc ggcggcgtgt ttgccgttgt
       61 tccgtgtcag tggtggcgca ttatagggag ttattccggc ctgacaagag gaaatttaaa
      121 ataattttct gaccgcgcac tttttattct ttatgcttat ttcagcgtcg gtttgttggt
      181 taactgggcg atttctcggg cgaaattcgc cacctgctcc caatcggtat agacaacttc
      241 tttgcgcgta tccgtttcac cgcctgacat cttcataatc agcttaatca taaaacggtc
      301 gtaccagcga taacgtgggt aacgcagcgc cccggcaatg accgcgcagc gatcgggacg
      361 ccattgtgaa ctcatcagaa acttgcgcgc gtagctgttg gtctgtggag tacgcttctc
      421 cggtttgcgc gccaccaggt ttacggaata aaaggcgctc ggcatcgaat tcagtcgcgt
      481 cgcatgtttt ttgacaaatt cctggaacgc agagtggtag tgaccatagc gaatagaagc
      541 accaatgacc acacggtcat agttttccca ttgtggttct tcaatgcggt gcacattggc
      601 gacatccgtc tggatcccca gttctttcag ttccgaagcc aggtaggagg caatctcgcg
      661 cgtttgtccg tcccttgttg agaaaagaat taatgttttc acgtattact ccatcattca
      721 cgccagaaag tcggggtaaa gagcaccagc aatgtaaaga cctcgagacg accaaacagc
      781 atgttggcaa tcaggatcca tttagccacc gggttcatac tggtaaagtt atcagcaacc
      841 acgccaagcc ctggccccag gttattcaat gtcgcaacaa ctgaggcaaa ggcagaaaaa
      901 tcatccacgc ccgtggcgat aatcgccagc atactgacaa taaacaccaa tgcataggcg
      961 gagaaaaatc cccaaacggc ttcgaggata cgttccggca gtgcgcgatt ccccagctta
     1021 atgctataga cggcgttcgg atgcaccagt cgtttcagct cacggttccc ctgcttaaac
     1081 agcagcagga tgcggatcac tttcaggcca ccgcccgttg acccggcgca accgccgata
     1141 aaagctgaac ataaaagcag taccggcaaa aagagcggcc agcgggcaat gctgtcagtc
     1201 gtaaacccgg cggttgtcgc catcgatacc acctggaaaa acgcctggtt aattgtcatc
     1261 agcgccgaac tgtagacatt atgaaaccac agtacgagtg tacaaataac caccagcgta
     1321 aactgtacgc cgataaacat gcgaaattcc ggatcgcgcc aataaacctt cagactacgc
     1381 ccacttaaca gtgaaaagtg cagaccgtag ttacaaccgg agatcagcag gaagatagca
     1441 atgatagtgt taatagtcgg actgtcgaaa taaccgatac tggcatcatg tgtcgagaag
     1501 ccgccaatag cgatagtcgc aaagctatgg ccgatggcat caaaggcatc cattccggca
     1561 aaccacaacg ccagcgcaca ggcgacggtc agcaagacat aaatcaacca cagggttttc
     1621 gccgtttccg caattcgcgg gcgcattttg ttatctttca gcgggccggg catttctgcg
     1681 cgatagagct gcatcccacc cacgccgagg ataggcagta tcgcaaccgc taacacgatg
     1741 atccccatcc cgccaaacca ttgcagcatc tggcgataaa agaggatggc atgagggagc
     1801 gaatccagcc ccaccagcgt agtggccccg gtggtggtca ggccagagaa agattcaaaa
     1861 aacgcatcgg taatcgtgag gttcgggctt tccgagaaga taaaagggag cgcaccgaca
     1921 ctacccagca cggtccaaaa cagcaccact atcagaaacc cctcacggga tttcagttcg
     1981 cccttctctt tgcggttcgg ccaccacagc atagagccaa tggcgagggc gacaaaaaag
     2041 gtctgggtaa aagcgcggcc cgctccatcc cggtagatga gtgctaccag cccagggata
     2101 atcatggtcc ctgaaaataa gatgaccagt agtccaacga ttcgggtaat ggcgcgaaaa
     2161 tgcatctctg ccgcttcctt agttctgcaa aatgaagtgg ggattattct tcaatcgcta
     2221 acaattgcaa tgaaccacgg ctaaaatccg ccagctttgc ggaaaattca gccactttcg
     2281 ccgccggaag cgccacccgc agcagaacga atgcctgata atcactgttg ataattttgc
     2341 cgtcacactg ccccagcaac gcttcaatgc cggttaactg actatattca cattgcaaag
     2401 tatattcggt taatggcgtc ttgcgttggg tcgttagctg gcgcagcgcc tgattcacgc
     2461 cgccgccata cgctttcact aacccaccgg tgccaagcaa tatgccgccg tagtagcgca
     2521 ctaccacagc ggtaatttcc ccgatgccgc tgcccattag ctgggcgagc atcggtttac
     2581 ctgccgttcc cgccggctcc ccgtcgtcag agaaacccag ctgttgagaa tcatccggcg
     2641 cacccgccac ccacgccacg caatggtggc gggcatcggg gtgttctgcc cgcaccgatt
     2701 caacaaacgc tttcgccgcc tcaacgccat cggtatgcgc caacatcgtt atgaagcggc
     2761 tctttttgat ctcttcaacg accgtgaccg gtgccgcagg aattaaccag ctttccatca
     2821 cgccagtttc agatcccggg tcatgttttc cacgttattt tcgtggatca ccacgttgtc
     2881 ttcgatacga atgccgctga acggtttcag tgcttcaatt ttctgccagt tgaagtgctt
     2941 gctgaactgc ccttcacgcc acggtgccag tagcgattcg atgaagtaga tacccggttc
     3001 gatggttaac accatgcccg gctggagaat acgggtgcag cgcaggtacg gatattttgc
     3061 cggtgccgcg aggtgtgtac cgctatcatc ctgcataaaa ccggctacgt catgcacctg
     3121 caggcccagc ggatggccga taccgtgcgg cataaacggt ccggtgagat cgttttcgac
     3181 catcgcttct tcactcatat cggtgatgat ttgatgttta cgcagcaatt tggcgatgcg
     3241 ctgatggaac tggaggtggt aatccacata gctgacgcca gctttcatgg tagcgatcag
     3301 cgcaagttgt tcatcattta cgtctttcac cagctgtgcg tagtcgttgt cgctttttgc
     3361 cgaccaggta cgagtcaggt cagccgcata gccgttatat tcggccccgg catccagcag
     3421 gaagctgcgc atctcttccg gtgcctgatg atccagtttg gtgtaatgca gcaccgaagc
     3481 gtgttcgtta agcgccacaa tgttgctgta aggtacgtcg gtatcacgat gaccggtcgc
     3541 ggtcagatag gcgatgttga tatcgaactc gctcatgcca gaacggaacg cttcttctgc
     3601 cgcacgatga ccgttgaccg ccattttctg cgcttcacgc atacaggcca gttcgtactc
     3661 ggttttgaag gagcggtagt aatgcaggta gtcgatcacc cctttcgggt tgatgttgct
     3721 ggcctcaata cccagttgca gcgcacgttc cggcaccgga ccgatataac cgatattgcc
     3781 gcgcgcagcg ggcagcaggc taccaatgcc atcggctttc ggcagtgcga tcacttccac
     3841 atcttcagtc cagaaggagg tcggcagcgg ttcgacgttg tgccagtaat caaccggcag
     3901 atagaaccac agtttcggct tgttcacgcc atccaccagc aaccagcagt ttggcacctg
     3961 agttaccggc acccacgctt tgaattgcgg gttcacttta aacggatagg gatgatcgtc
     4021 gagaaaaacg ttgaacagct cgccggagtg aataagtaat gcatccagct tgaagcgcgc
     4081 cagcgcatcg cgagtccgtt cttgtaaggt agctatatga tttttataga gcgaggccag
     4141 tgattccatt ttttaccctt ctgttttttt gaccttaagt ctccgcatct tagcacatcg
     4201 ttcatccaga gcgtgatttc tgccgagcgt gatcagatcg gcatttcttt aatcttttat
     4261 ttacatgttt ttaacacaaa atacacactt cgatgcatct ggtacgacca gatcaccttg
     4321 cggattcagg agactgacat gctttacaaa ggcgacaccc tgtaccttga ctggctggaa
     4381 gatggcattg ccgaactggt atttgatgcc ccaggttcag ttaataaact cgacactgcg
     4441 accgtcgcca gcctcggcga ggccatcggc gtgctggaac agcaatcaga tctaaaaggg
     4501 ctgctgctgc gttcgaacaa agcagccttt atcgtcggtg ctgatatcac cgaatttttg
     4561 tccctgttcc tcgttcctcg ttcctgaaga acagttaagt cagtggctgc actttgccaa
     4621 tagcgtgttt aatcgcttgg aagatctgcc ggtgccgacc attgctgccg tcaacggcta
     4681 tgcgctgggt ggtggctgcg aatgcgtgct ggcgaccgat tatcgtctgg cgacgccgga
     4741 tctgcgcatc ggtctgccgg aaaccaaact gggcatcatg ccgggctttg gcggttctgt
     4801 acgtatgcca cgtatgctgg gcgctgacag tgcgctggaa atcattgccg ccggtaaaga
     4861 tgtcggcgcg gatcaggcgc tgaaaatcgg tctggtggat ggcgtagtca aagcagaaaa
     4921 actggttgaa ggcgcaaagg cggttttacg ccaggccatt aacggcgacc tcgactggaa
     4981 agcaaaacgt cagccgaagc tggaaccact aaaactgagc aagattgaag ccaccatgag
     5041 cttcactatc gctaaaggga tggtcgcaca aacggcgggg aaacattatc cggcgcccat
     5101 caccgcagta aaaaccattg aagctgcggc ccgttttggt cgtgaagaag cattaaatct
     5161 ggaaaacaaa agctttgtcc cgctggcgca caccaacgaa gcccgcgcac tggtcggcat
     5221 tttccttaac gatcaatatg taaaaggcaa agcgaagaaa ctcaccaaag acgttgaaac
     5281 accgaaacag gccgctgtac tgggcgcagg catcatgggt ggcggcattg cttaccagtc
     5341 tgcgtggaaa ggcgtaccgg ttgtcatgaa agatatcaac gacaagtcgt taaccctcgg
     5401 catgaccgaa gccgcgaaac tgctgaacaa gcagcttgaa cgcggcaaga tcgatggtct
     5461 gaaactggct ggcgtgatct ccacgatcca cccaacgctc gactacgccg ggtttgaccg
     5521 cgtggatgtt gtggtagaag cggttgtcga aaacccgaaa gtgaaaaaag ccgtactggc
     5581 agaaaccgaa caaaaagtac gcccggatac cgtactggcg tctaacactt caaccattcc
     5641 tatcagcgaa ctggccaacg cgctggaacg cccggaaaac ttctgcggaa tgcacttttt
     5701 taacccggta caccggatgc cgttggtaga aattattcgc ggcgagaaaa gctccgacga
     5761 aaccatcgcg aaagttgtcg cctgggcgag caagatgggc aagacgccga ttgcggttaa
     5821 cgactgcccc ggcttctttg ttaaccgcgt gctgttcccg tatttcgccg gtttcagcca
     5881 gctgctgcgc gacggcgcgg atttccgcaa gatcgacaaa gtgatggaaa aacagtttgg
     5941 ctggcctatg ggtccggcat atctgctgga tgtcgtgggc attgataccg cgcatcacgc
     6001 tcaggctgtc atggcagcag gcttcccgca gcggatgcag aaagattacc gcgatgccat
     6061 cgacgcgctg tttgatgcca accgctttgg tcagaagaac ggcctcggtt tctggcgtta
     6121 taaagaagac agcaaaggta agccgaagaa agaagaagac gccgccgttg aagacctgct
     6181 ggcagaagtg agccagccga agcgcgattt cagcgaagaa gagattatcg cccgcatgat
     6241 gatcccgatg gtcaacgaag tggtccgctg tctggaagag ggcattatcg ccactccggc
     6301 ggaagcggat atggcgctgg tctacggcct gggcttccct ccgttccacg gcggcgcgtt
     6361 ccgctggctg gacaccctcg gtagcgcaaa atacctcgat atggcacagc aatatcagca
     6421 cctcggcccg ctgtatgaag tgccggaagg tctgcgtaat aaagcgcgtc ataacgaacc
     6481 gtactatcct ccggttgagc cagcccgtcc ggttggcgac ctgaaaacgg cttaaggagt
     6541 cacaatggaa caggttgtca ttgtcgatgc aattcgcacc ccgatgggcc gttcgaaggg
     6601 cggtgctttt cgtaacgtgc gtgcagaaga tctctccgct catttaatgc gtagcctgct
     6661 ggcgcgtaac ccggcgctgg aagcggcggc cctcgacgat atttactggg gttgtgtgca
     6721 gcagacgctg gagcagggtt ttaatatcgc ccgtaacgcg gcgctgctgg cagaagtgcc
     6781 gcactctgtc ccggcggtta ccgtcaatcg cttgtgtggt tcatccatgc aggcactgca
     6841 tgacgcagca cgaatgatca tgactggcga tgcgcaggca tgtctggttg gcggcgtgga
     6901 gcatatgggc catgtgccaa tgagtcacgg cgtcgatttt caccccggcc tgagccgcaa
     6961 tgtcgccaaa gcggcgggca tgatgggctt aacggcagaa atgctggcgc gtatgcacgg
     7021 tatcagccgt gaaatgcagg atgcctttgc cgcgcggtca cacgcccgcg cctgggccgc
     7081 cacgcagtcg ggcgcattta aaaatgaaat catcccgacc ggtggtcacg atgccgacgg
     7141 cgtcctgaag cagtttaatt acgacgaggt gattcgaccg gaaaccaccg tggaagccct
     7201 cgccacgctg cgtccggcgt ttgatccagt aaacggtacg gtaacggcgg gcacatcttc
     7261 tgcactttcc gatggcgcag ctgccatgct ggtgatgagt gaaagccgcg cccatgaatt
     7321 aggtcttaag ccgcgcgctc gtgtgcgttc gatggcggtc gttggttgta acccatcgat
     7381 tatgggttac ggcccggttc cggcctcgaa gctggcgctg aaaaaagcgg ggctttctgc
     7441 cagcgatatc ggcgtgtttg agatgaacga agcctttgcc gcgcagatcc tgccgtgcat
     7501 taaagatctc gggctaatgg agcagattga cgagaagatc aacctcaatg gtggtgcgat
     7561 cgcgctgggt catccgctgg gctgttccgg tgcgcgtatc agcaccacgc tgctgaatct
     7621 gatggaacgc aaagacgttc agtttggtct ggcgacgatg tgtatcggtc tgggtcaggg
     7681 tattgcgacg gtgtttgagc gggtttaacc acttgccgga tgcggcgtga acgccttatc
     7741 cggtctaccg atcctgcacc aatgtaggcc tgataagacg cgccagcgtc gcatcaggca
     7801 tcgtgcaccg attgccggat gcgacataga tctaaatgcc actgaataaa gttttagttg
     7861 ccgttcttcc cgcctgtcag gggcgggttt ttttatatct cagataaatg caaacgcatc
     7921 gccaaacaga cgatcttccc gcgcattacg ctcactgcaa aacaggtcac gagcaatttt
     7981 cgccatctca aaacgtccgg caatatagat atcatgctct gccagcgtac catgatcctg
     8041 caagaccgcc gttaacacgg tgccagtacg cccacgccag cccgcttccg gttgttcaac
     8101 caccggcacc acacgcaggc caggatgctt cagcgaaagc gcctcaagct cggagagatc
     8161 ataaagatgt tgctcctcac gcccacccca gtaaatggtg atatcgcgat tgggattacg
     8221 cgccaacgcc gtcaataaaa tcgagcgcgc ataggagaac ccggtgccgc ccgcaatcaa
     8281 aatcatcgga cgctcttcat catcgcgcag ccacgcttct ccgtagggaa tatcgaccac
     8341 gatttgataa tctttgagga tgcggtccat gactgctttc gcgtaaaggt tgatttcaga
     8401 agcgccaata tgcagctcta taaacccttt ttcatccggc gtcgaagcca ttgaaaacgg
     8461 acgtttgtcg cgctcatcca tcactaccat caaatactga ccagcacgaa aagaaaaggc
     8521 cgcgtctggc acgatgcgga cacgatatac ggtatccgtg atagcttcta ccgaggtcac
     8581 tttacagctt aaggttgtca tgcgctttct ctgtcggatc gataaatagg gcaaaacaaa
     8641 cgcgcatcag gcgcttttac cgttgttaaa aatagccagt tcatcccaga tggcgtcaat
     8701 atgcgcgaca acatctggat cttttttgat gggacgtccc cattcacgct gggtttcccc
     8761 cggccattta ttcgtggcat ccagccccat ttttgaaccc agcccggaga caggcgaggc
     8821 aaaatccaga taatcaatag gcgtattttc taccagaaca gtatcccgcg ccgggtccat
     8881 acgggtggta atcgcccaaa tcacatcgtt ccagtcgcgt gcgttgacgt catcatcgca
     8941 aacgatcaca aatttagtgt acataaactg gcgtaagaac gaccagacgc ccatcatgac
     9001 gcgcttcgcg tgtccggcgt actgtttttt gatcgtcact accgccagac gataagaaca
     9061 gccttccggc ggcaggtaaa aatcgacaat ttccgggaac tgtttttgca gaatcggtac
     9121 aaacacttcg ttcaacgcca cgcccagtac cgcgggctca tctggcggac gcccggtata
     9181 ggtggaatgg taaatcgcat cttcacgctg ggtaatatgc gtcacggtaa ataccgggaa
     9241 actatcgact tcgttatagt aaccggtgtg gtcgccatac ggcccttccg gcgcagtttc
     9301 gccttgttcg atataccctt ccagcacaat ctccgcactg gcgggcactt caaggtcatt
     9361 ggagatacac ttcaccactt cggtcttggt accgcgcagc aatccggcaa acgcatactc
     9421 tgaaagtgta tccggaacgg gggtgactgc accgagaatc gtggcgggat cggcacccag
     9481 cgccacagaa accgggaaac gttcgcccgg atgcgccgca caccactcct gataatccag
     9541 cgcgccgccg cgatgcgaca gccagcgcat aatcagtttg tttttaccaa tcagctgctg
     9601 gcgataaatg cccagattct gccgctcttt atgcgggccg cgcgtcactg tcagccccca
     9661 ggtaatcagc ggtgcggcat cttccggcca gcaggtcata atgggaatgc gattgagatc
     9721 gacgtcatcg ccagagacga ttttttgttg gcagggcaca ccacgcagcc gctttgtcgg
     9781 catgttcaat acttgcttaa actgcggcag tttatcaaac aggtcgcgga aaccttttgg
     9841 cggctccggc tctttcagaa acgccaataa tttaccaact tcacgcagcg ccgaaacatc
     9901 ttcctgtccc atgcccatcg ccacgcgctt tggcgtaccg aacaggttgc acagcaccgg
     9961 cattgagtag cctttagggt tttcgaacaa cagcgcaggc ccaccggcac gcaaagtgcg
    10021 gtcagcaatt tcagtgattt ccagatgcgg atccaccggg agcgtgatac gttttagctc
    10081 accctgctgt tcaagcagcg tcaagaagtc gcgtaaatcg ttatatttca tggcgtccat
    10141 tgtagcctct taatctacgc ccattatacg gcgttcatct ttgcgatgct gtaaatttgt
    10201 taaattagcg tgaactctga cggtataacg caaaccgggg aatataatta acttagcgta
    10261 aagcttttgc tatccttgcg ccccgattaa acggataaga gtcattatgc aatcctggta
    10321 tttactgtac tgcaagcgcg ggcaacttca acgtgcccag gaacacctcg aaagacaggc
    10381 tgtgaattgc ctggcaccga tgatcaccct ggaaaaaatc gtgcgtggaa aacgtactgc
    10441 agtcagtgag ccattgtttc ccaactacct gtttgtcgaa tttgatccag aagtgattca
    10501 taccacgact atcaacgcga cccgcggtgt cagccacttc gtgcgctttg gcgcgtcgcc
    10561 agcgatagtc ccatcggcgg tgattcatca gctatcggta tataaaccga aagacattgt
    10621 cgatccggca acaccttatc cgggtgataa ggtgattatt accgaaggcg cgttcgaagg
    10681 ctttcaggcc attttcaccg aacccgatgg tgaggctcgt tccatgctat tgcttaatct
    10741 tattaataaa gagattaagc acagtgtgaa gaacaccgag ttccgcaaac tctaaaacgc
    10801 aatcccaaac agtgttttga cattggcatc cgtggtggca gccagccatg cggcatcttc
    10861 tccacgccag tgcgcaatac gttgcaaaat atggtgcaga tgggctggct cgttgcgccg
    10921 ggatgatggc tttggcgtga aatcgcgcgg gagcagatac ggcgcatcag tttcgatcag
    10981 caatttctcc gccggaatca acggtaacaa ttcccgcagc tccagcccgc gtcgttcatc
    11041 gcaaacccaa ccggtaatgc cgatataaat tccacgcgcc acgcacgcct gcatctcttc
    11101 gcgtgtgccg gtaaagcaat gaagaaccgc accaggcagt ttatccagcc acggctccag
    11161 caatgtcata aaccgctcgt gggcatcgcg acagtgcata aataccggca tgtttaattc
    11221 tgcggcaatg cgtagctgag caacaaaagc gcgttcctgc tcttccggcg tcgaaaagtt
    11281 gcggttaaag tcgagaccac attcaccaat cgccaccact tctggctgca cggccagctc
    11341 aataatcgct tcttcagtcg cagcttgcca ctggctgctg tcgtgaggat gtacgcccgc
    11401 cgttgaccaa caggacgaat actgacgcgc cagcttttgc gcctgctggc tttcacgcag
    11461 gttagtgccg gtgatgagta gcccattaac tcccgcgtca aaagcgcgcg ctacaacatc
    11521 atcacggtct ttcgcaaatt gcgaactggt caaattaacg ccgatatcaa acatcctgta
    11581 ctccatatga caaccgccct gacgggcggt tgaatttatt cttcagtttt ttcgctttct
    11641 gcttcagcgt cgttttcctc ttcccgattt cgccctttac caacgtaaaa gcgtgagaag
    11701 aagacaccga tttcaaacag acagtacatc gggatcgcca atagcgtttg cgagaagaca
    11761 tccggcggcg tcagcaacat cccgacaacg aatgcaccaa ccagcacata cgggcgtttt
    11821 ttgcgtaagt cttctggcga ggtaatcccc atccagcaca gcagcacaat tgccaccggc
    11881 acttcaaagg agacaccaaa cgccataaac agcgccataa cgaagcttaa atagctggcg
    11941 atgtcggtgg atacctgcac cccttccggc gcggtattgg caaggaagcc aaatgccagc
    12001 ggaaagacca caaagtaggc gaatgccatg ccgatataaa acagcagaga gctggaaacc
    12061 agcagcggca ccaccaggcg acgttcatgc ttatacagcg ctggggcgat aaatgcccac
    12121 acctgataga gaatcaccgg cgctgacaga atcagcgaca ccataaaggt cagcttgatc
    12181 ggcgtaaaga acggcgaggc cacgtcggtg gcgatcatcg ttgaaccttg cggcaactgc
    12241 ttgatcaatg gcgcggatac caggtgatag atgtcattgg cgaaatagac cagacacagg
    12301 aatatcacga tcaccgcgat aatgcagttc agcagacgct tacgcagctc aattagatgc
    12361 gtgataagcg gttgagtatc ttctacagac atgtttacgg tttatcactc gacgaagggg
    12421 aaggtgcagc ggttttcggt tcagcgtccg cagcaggttt taccaccggc tctggcgtgg
    12481 tttctggctt ctgttccggc gaactggcct gcgtttgtgc agcggcaggc gttacgccct
    12541 catgcgcagc ttcattatct ttcaccaccg ggttatggat ggtgtgcgct tcatcgctcg
    12601 ccttttctgg atcgtttgca acgtaggaac gcttcatcga ctccgcggcc tggcgtagtt
    12661 catccatcga cgctttcagt tcgggcgtca ggttagtgag gctcgccttt tcaacctttt
    12721 tcagactgtc ctgaaactcc tggagtttta actcctggat cagttcgttc tgcaccgttg
    12781 tcgccagtga acgcaacgcg cgaatccagc ccgctaccgt ttttaccgcc acaggcagtc
    12841 gttgcggccc cagaacgacg aggccgatga tgaacaccaa tagcagttcg ctaaaaccga
    12901 tatcaaacac ggattacacc tgctctttat cgtggcgctt cgcgtcttct gttttagcct
    12961 gttcctgatt cgtatccgcc tgcttatcgg cgatagtttt cgcagtaaaa tcagcatcct
    13021 gactggtttt atcctgcttt ggttcatcat cgctcattgc ttttttaaag cctttgatcg
    13081 acgcaccaag atcggaaccg atggagccga gctttttggt gccaaaaagc agtacaacga
    13141 tgacggcaat aatcaataac tgccaaatac tgataccacc catacatgtt cctctgtggt
    13201 agatgatgat taaacaaagc cgcattatac gttacacggc ccgccttgag cgatgaaaaa
    13261 atcagcgtgt tttgcgccaa ccgacaaacc aggcgatcag accacctgcc attaaccagc
    13321 cgggcatcag cccccactca ggtcggctga ccaacaagaa tgtgccactt aatactaacg
    13381 tagcgccaat tccgagaaaa taacgcgatt gtccctgacg tacatgattt gactgaagct
    13441 cgcgggcaat cttatcaaca ctgtgctgta aatacttgcc ctggcgcaaa ctgtcgtaaa
    13501 ccaattcagg cagttctggc attttttcga cccagaacgg cgctttttct ttaaatgctc
    13561 tcaccagcgc aggaataccg acctgatctt taatccacga ctccaggaaa ggcttcgctg
    13621 ttttccataa atcgagctgc ggataaagct ggcgtcctac cccttcgaca tagagcaggg
    13681 ttttctggag taacaccagt tgcggctgca cttccatatt gaagcgacgc gccgtattaa
    13741 acagatttaa cagtacatgt ccaaacgaaa tttcggccag cggtttctca aagataggtt
    13801 cacagaccgt acgaatggca aattcgaact cttcaacgtt ggtatctggt ggcacccagc
    13861 ctgaatcgac gtgtagctct gccactttgc gatagtcgcg attaaagaag gcgataaagt
    13921 tttctgccag atagcgttta tcttctttgt ttagcgagcc aacaatcccg caatcaatgc
    13981 cgatatattt cgggttttcc gggtgttcat agcttacgaa gatgttgcca gggtgcatat
    14041 cggcatggaa aaagctgtcg cgaaagacct gagtgaagaa cacctgcacg ccgcgttccg
    14101 ccagcaattt catgttagtg ccgtttttct ccagcgccgc aacatcagac accggaatgc
    14161 cgtaaatgcg ctccatcacc atcatccctt cactacaata gtcagggtaa acttccggga
    14221 tgtagagcat cgggctgtct tcaaaattgc gccgaagctg aatggcgttg gcagattccc
    14281 gcagcaaatt cagttcatca atcaaggtct tttcgtactc gcgcaccact tcggttgggc
    14341 gcagacggcg accatccggc agcaaacgcg gcacccagcg agccagacgg tagataagtt
    14401 tcagatccgc tttaatgacc ggcaaaatat ccgggcggat gactttaatc accacctctt
    14461 taccattcga tttcaatcgc gcggtatgaa cctgggcgat agaagcagaa gccagcggct
    14521 tgatttcaaa atcgtcaaac cacgcttcta ccggcaagcc gcccattgca gcttcaatct
    14581 gctgcttcgc cagcttgcca tcaaacggag ctactttgtc ctgcaataac gccagctgat
    14641 cggcaatatg cggtggaaaa agatcgcggc gggttgataa catttgcccg aacttgatcc
    14701 aaaccggccc cagttcttgc agggccagtc gtagtcgctc acctaaaagt ttgtctttat
    14761 gccgatttgg catccagaat aatgagtatc gccatagccg tagcggcagg gtgatacgca
    14821 ttttggggat cagttcatca agtccgtagc ttaaaaaagt gcgaatgatg aaatataggc
    14881 gccgtacttc acctggcgtc atttagcctc cagtttttcc agccgtttgg tcagggcatc
    14941 aacagcacgc tcgacggcag ccgtctcttc cgcaaaccag gccacttcaa gcggaccggg
    15001 tgccatacgc cactcttcag taatggcttc cgccacataa cgttgctggc gcttaatgcc
    15061 gtgatgcagg aactttgcgc ctccgcgcat ggctttgctg attccttcag cggcgatatc
    15121 accggtataa ggggccagca gttccgcagg gtcgaactct gccagatctg ccagcgcaac
    15181 gaagttttgc accacctgaa tatcgccctg cacttccagc tcaccactgc gaatcagtgc
    15241 ggtaagctgc tggcgatcgc gaagtttcgg caacacactg gcgtaggcga taacggtgca
    15301 gtcagcatcg cctgcccatt cgcccagtac atcaacctgg cgttcgctga acaccagaat
    15361 caatgacgtc gaaaagcctt ttacctccac gcgcaatact ttacccagca gacgcgagcg
    15421 ggctgttttc agcgcgggtg agcgatacag gaaggtgttg agcagacttt caattcctgc
    15481 cgtcactaaa ggtttaaaag gcatttccgg tctcctgtca gaacttataa ccacgatgca
    15541 gcgccacaac ccctgccgtc agattgtagt agtcgacact ttcgaatccg gcatcctgca
    15601 tcatggcttt cagggtatcc tgatcgggat gcatacggat ggattctgcc agataacggt
    15661 agctgtcggc gtcgttcgcg accagtgagc caatacgcgg cagcacatgg aaggagtatg
    15721 catcataggc tttgctcagc ggctcgataa ttggcttcga gaactcaagc accagcaggc
    15781 ggccgccggg tttcagcacg cgatacattg aacgcagtgc tttatctttg tcggtgacgt
    15841 tacgcagacc aaacgaaatg gtgatgcaat caaaggtgtt atccgggaac ggcagcgcct
    15901 cagcgttcgc ctgaacatac tcaacgttgc caatcacacc gatattacgc agcttctcgc
    15961 gtcccatttt gagcatggat tcattgatat cagcaaggac cactttgcca gtttctccga
    16021 ccaggcggga gaatttcgct gtcaggtcgc cggtgccacc agccagatcc agcacggtct
    16081 gcccacggcg tacgccgctg caatcaatcg tgaatcgctt ccacaaacga tgaataccaa
    16141 atgacatcaa atcattcatg acatcgtatt ttgatgccac ggaatggaaa acgtgggcga
    16201 ccatatccgc tttttgttcc ttcgcgacgg tctgaaaacc aaagtgcgtc gtttcttgtg
    16261 acttatccac catctcaatg cctgctcatc aaaaaattgt tccagaagtg taacagattg
    16321 ggcgtcgatg ccctagattt ctacccggct taactacccc taatgggcta gcgcgactgc
    16381 tgattatatt catcatcgcg ttgataagct tcatcattcg gctgctccgg aaccgaccga
    16441 agtcgatact cttcatcctg gctcaccgcc tgttcagcca aatccggatt aatctcgcgt
    16501 ttaatttcta ctcctaaacc gcgaaacgct tctgcctgcg ccagcacatt tccgcgacct
    16561 gaagagagtt ttttcattgc ctggcggtag ttatcctgcg ctttgtcgag actttgacca
    16621 atcgcggaca tgtcatcgat gaacaaacgc atcttgtcgt acagcttgct ggcacgatcg
    16681 gcgatttgct gggcgttgcg gctttgatgc tcataacgcc acaggttggc aatagtacgc
    16741 aacgccacca gcagcgtagt cgggctaacc agcatgatat tgtttttcaa cgcttcggtg
    16801 atcagctccg gctggcggtc aagcgccagt aaaaaagcgg gttcaacggg aataaacatc
    16861 agcacgtaat ccagagttcg cagccccggc agctgttgat aatctttgcg tcccagcaaa
    16921 cggatatggt tacgcaccga cgcgatatgt tcctgtagcg cgctttcgcg ggtgtagtcg
    16981 tcttcggcgt taaaatagcg ttcataggcg accagcgtca ttttggcgtc gatcaccaca
    17041 tcttttccct gcggcagccg cacgatgaca tccggctgca tccgcgagcg ggcgtcattt
    17101 tcgatgctga cctgggtttc atattcatac ccttcacgca gaccggaagc ctccagcacc
    17161 cgcgtcaata ctacctcgcc ccagttgccc tgggttttat tgtcgccttt cagcgcgcgc
    17221 gtcaggttaa tcgcttcctg ggccatttgc gcgttgagtt gctggagatt gcgaatttcg
    17281 tgggtcaggg tatggcgttc ttgtgcttct ttaccgaagc tgtcctgaac ctgacggcgg
    17341 aaaccgtcca gttgttcacg tagcggcgac aacaggctgt tcagactctg acggttttgc
    17401 tcatcaaccc ggcgattgct gtgctcaaaa atacggttgg cgaggttttc aaactgctca
    17461 ctgaggcgct gctcgctgtt aatcatctgg cgaattttat cgtcagcatg ttgctgtgcg
    17521 gcttccatcc gcgtggttac ttcacgcaga tcggcctcca gagaggtgtt aatactttgc
    17581 aggctgcgca cttcgttatt gagtaactcg cactctgcac gccagtgctc gctttgggta
    17641 atttgttgtt ttgccgcgct taactccgcg accatctctt cacgttcagc taattgctcg
    17701 gctttttgct gcgcatgttg ataactggca aacagccagc caattgccac acccaccaac
    17761 gcaataactg cgtaaaccat gattgagaaa tccacaacgc ctcctgacgc aacaacttac
    17821 ccgcacaaaa tagaattgtg ctgtacaaac gtccagttgg aaaggcattt cctgcgaggc
    17881 gctacgcaaa aatacaaaag gccgaacgcg tcggccttca gacaggagaa gagaattaca
    17941 gcagacgacg cgccgcttcc accacgattt tcaccgcttg gctttcagtt tgtttcatcg
    18001 tctcagcatt cgggatctct tgctgggtgc ggttaacgat aacacccgct accataccgg
    18061 cacgcaggcc ctgacttgca cacatggtca gcagggttgc agattccatt tcatagttca
    18121 ttacgcccat cgcctgccac tcttccatag aacctttaaa gtgacgaact acgcgaccag
    18181 agtaagtatc gtaacgttcc tggcctgggt agaaggtatc agaagaagct gtcacgccaa
    18241 cgtgagttgt cgcgccaatg gatttcgcag cttcaaccag cgcagtcgta cattcgaaat
    18301 cagcgacagc cgggaattcc agcggtgcga agtgcaggct cgcgccatcc agacggacag
    18361 acgccgtggt aaccaggaca tcacccacat taatatgcgg ctgaatagcg cccgttgtac
    18421 cgatacgcag gaaggtgcga atgcccagct gtgccagctc ttcaacagca atagaggtag
    18481 acgggccgcc gataccggta gagcagacga taacaggttt accatccagc tctgcacgcc
    18541 aggtggtgaa ttcgcggtga gatgccagct taaccggctt atccatcagc gcggcgatct
    18601 tttccacacg atccgggtcg ccagggacga tggcaagcgt agccccttgt aaatcgtttt
    18661 tagtgaggcc gagatgaaaa acatcagact tggacatata caactcctct gtgaatcggt
    18721 ttagtcagaa gaagcaaaaa gacactttac cgaagggttt aacatttttt cgtgatactc
    18781 atcaccatga cgcaaatgcg ttgcataaat ttacccacca aaagtgatgc aaatcacata
    18841 aatcactctt cattctgcag gactgcataa aagatgagcc gattcaggca atgtgatttg
    18901 ttgcatgctg actatagtta acattgcgca acatttttat aagggtacgg agaataccat
    18961 ggcaacaaca caacaatctg gatttgcacc tgctgcatcg cctctcgctt cgaccatcgt
    19021 tcagaccccg gacgacgcga ttgtggcggg cttcacctct atcccttcac aaggggataa
    19081 catgcctgct taccatgcca gaccaaagca aagcgatggc ccactgccag tggtcattgt
    19141 agtgcaggaa atttttggca tgcatgaaca tatccgcgac atttgtcgcc gtctggcgct
    19201 ggaggggtat ctggctatcg cacctgaact ttacttccgc gaaggcgatc cgaatgattt
    19261 tgccgatatc cccacgttgc ttagcggtct ggtagcaaaa gtgcctgact cgcaggtgct
    19321 ggccgatctc gatcatgtcg ccagttgggc ttcccgcaac ggcggcgatg ttcatcgttt
    19381 aatgatcacc ggattctgct ggggtggacg tatcacctgg ctgtatgccg cgcataatcc
    19441 acagctaaaa gctgcagtgg cgtggtacgg caaactgacg ggcgacaagt cgctaaattc
    19501 accgaaacaa cctgttgata tcgcaaccga tcttaacgcg ccggttctcg gcttatatgg
    19561 tggtcaggat aacagcattc cgcaggagag cgttgaaacc atgcgccagg cgctgcgggc
    19621 tgctaatgcg aaagcagaga ttatcgtgta cccggacgcc gggcatgcat tcaacgctga
    19681 ttatcgcccg agctatcatg ccgaatctgc gaaagatggc tggcagcgta tgctggaatg
    19741 gtttaagcag tatggtggga agcggagtta gtttcctctt agtctatatt tgagatggtg
    19801 agtgaacgag tgcgttttgc tgccatctct gtcccccaaa aaataatcag tatgaattga
    19861 ttggagatta cgactccgct atttgacctt aagaaggtcg gcaagtcata gtcataaatg
    19921 agtctcttca atggaagaca ccttagagat ttaccatcta ctcccattca caaacaaaca
    19981 ttaattatta tcaacacatt cacattaatt ataaatcatc tcagaccttc ctgataaaaa
    20041 gatattaaag tgaaacattt tgtttttcac attttagttc atcactttta ggcgtaaata
    20101 aaggtaaaaa aaacaacaat actatttctc tttcacaaaa gaattaacaa aaggtttttt
    20161 aaggatgagt gatattattt acttgaccat aaccggagaa caacaaggat gtatttcctc
    20221 tctttgtgga acgagcgcat caataggtaa tcgctggcag attggccatg aagatgaaat
    20281 cttcgcgttc tcgctctcta atagtattac gaatgcaggc aaagggtcac aattgcatgg
    20341 ccttagtttc tgtaaattct tattaacgct attaacaata acgagcagtt gttcatggcg
    20401 tttgacttct atcggatcaa tagatttggt cgatgggaga aatattacaa cattcaactc
    20461 cgcggcgcgc tcttatcagc aatcaatcac ctgtttactg agaacaatct ggatacagaa
    20521 gccatcactg tcagttatga atatatactc tccaggcatc tgattgctaa tactgaattt
    20581 agttatttgg catttcccga taactacaac cgtctgttta taccacggcc aaaaactaaa
    20641 gctggtaatg gttcaaaaca cttaatagta aagcggttgg cagactgctt gctgctggcg
    20701 gcatatacaa tgggaatatc gaaggattca gggaaacagc agacaagttg gggggagatg
    20761 cacctgctgg ttacgatcaa tttatggata acaaagggtt actcatcgct ggtgcttcaa
    20821 tagttgctgg agcagttctg gggagaatga gactccctga tttggaatca cttgagcatt
    20881 tcggagccag aggagcagta tcaggaa
//
LOCUS       DAJVUY010000065        20724 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.065, whole genome shotgun sequence.
ACCESSION   DAJVUY010000065 DAJVUY010000000
VERSION     DAJVUY010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20724
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.065"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..250)
                     /gene="hyfA"
                     /locus_tag="OQQ72_002143"
     CDS             complement(<1..250)
                     /gene="hyfA"
                     /locus_tag="OQQ72_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HCS2011869.1"
                     /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAILRCTGNSG"
     gene            complement(503..973)
                     /gene="bcp"
                     /locus_tag="OQQ72_002144"
     CDS             complement(503..973)
                     /gene="bcp"
                     /locus_tag="OQQ72_002144"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCS2011870.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(973..1545)
                     /locus_tag="OQQ72_002145"
     CDS             complement(973..1545)
                     /locus_tag="OQQ72_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HCS2011871.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            1691..2569
                     /gene="dapA"
                     /locus_tag="OQQ72_002146"
     CDS             1691..2569
                     /gene="dapA"
                     /locus_tag="OQQ72_002146"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCS2011872.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            2586..3620
                     /gene="bamC"
                     /locus_tag="OQQ72_002147"
     CDS             2586..3620
                     /gene="bamC"
                     /locus_tag="OQQ72_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HCS2011873.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            3833..4546
                     /gene="purC"
                     /locus_tag="OQQ72_002148"
     CDS             3833..4546
                     /gene="purC"
                     /locus_tag="OQQ72_002148"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCS2011874.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKRFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            4714..5577
                     /locus_tag="OQQ72_002149"
     CDS             4714..5577
                     /locus_tag="OQQ72_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HCS2011875.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            5592..7607
                     /gene="tmcA"
                     /locus_tag="OQQ72_002150"
     CDS             5592..7607
                     /gene="tmcA"
                     /locus_tag="OQQ72_002150"
                     /EC_number="2.3.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cytosine(34) acetyltransferase TmcA"
                     /protein_id="HCS2011876.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMPPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYCLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            7681..8379
                     /gene="ypfH"
                     /locus_tag="OQQ72_002151"
     CDS             7681..8379
                     /gene="ypfH"
                     /locus_tag="OQQ72_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS2011877.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFLGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(8489..8689)
                     /locus_tag="OQQ72_002152"
     CDS             complement(8489..8689)
                     /locus_tag="OQQ72_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HCS2011878.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(8717..9844)
                     /gene="dapE"
                     /locus_tag="OQQ72_002153"
     CDS             complement(8717..9844)
                     /gene="dapE"
                     /locus_tag="OQQ72_002153"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HCS2011879.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA"
     gene            complement(9848..10204)
                     /locus_tag="OQQ72_002154"
     CDS             complement(9848..10204)
                     /locus_tag="OQQ72_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HCS2011880.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
     gene            10585..10644
                     /gene="ypfM"
                     /locus_tag="OQQ72_002155"
     CDS             10585..10644
                     /gene="ypfM"
                     /locus_tag="OQQ72_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HCS2011881.1"
                     /translation="MIERELGNWKDFIEVMLRK"
     gene            complement(10743..13855)
                     /gene="acrD"
                     /locus_tag="OQQ72_002156"
                     /pseudo
     CDS             complement(10743..13855)
                     /gene="acrD"
                     /locus_tag="OQQ72_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
     gene            complement(14018..15718)
                     /gene="narQ"
                     /locus_tag="OQQ72_002157"
     CDS             complement(14018..15718)
                     /gene="narQ"
                     /locus_tag="OQQ72_002157"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HCS2011882.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQHLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            15924..17903
                     /gene="aegA"
                     /locus_tag="OQQ72_002158"
     CDS             15924..17903
                     /gene="aegA"
                     /locus_tag="OQQ72_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
                     /protein_id="HCS2011883.1"
                     /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV
                     IKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTM
                     QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR
                     TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD
                     LAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG
                     RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG
                     AGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI
                     HFELNCEVGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK
                     QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG
                     SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEG
                     SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG
                     DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH"
     gene            17971..18546
                     /gene="nudK"
                     /locus_tag="OQQ72_002159"
     CDS             17971..18546
                     /gene="nudK"
                     /locus_tag="OQQ72_002159"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HCS2011884.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            18672..19715
                     /locus_tag="OQQ72_002160"
     CDS             18672..19715
                     /locus_tag="OQQ72_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HCS2011885.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(19825..20724)
                     /locus_tag="OQQ72_002161"
                     /pseudo
     CDS             complement(19825..20724)
                     /locus_tag="OQQ72_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311354.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; frameshifted;
                     incomplete; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="transketolase"
BASE COUNT         5007 a         5301 c         5546 g         4870 t
ORIGIN      
        1 gtccgctatt gccagtacac ctcaggatcg catcatccct ctgggagatg gcattgaccg
       61 ggcagacctg caggcaaggg gcttcctcac agtgatgaca cacgacaggg gcagtgattg
      121 ttgacgtctt cgccagggcc aggcgcgggt gttgctgtaa accttgcgtt ttatgcacgt
      181 ccgaacaggc agcgagacag gtattacatc ctgtacacca cagtggttcg gccaccacaa
      241 agcggttcat gtcggctcct tgaaaatgat atgaaacatt gcatttcata ttgcataaag
      301 gatgccagtc tgattaattt aatatattca ataaattatg tattaacagg gttctgaacg
      361 gtacaaaaat gatggtcatt aacgttcagc aaaaaatgga ttcgacaccc gtgtcgcagg
      421 ggaaagcgag aatgtgatct tgatcacgag aagtgaggtg tgctgaccgc aagcgcagcc
      481 agcacggaat ggagcaaagt aatcaggcgt gttctttcag ccagttcagc acaacgtcgt
      541 ggtgattgct ggttttaaaa tcgtcaaaga catgttcgat tttgccatca gcgtcaatca
      601 ggaagctgat gcgatgaata ccatcgtagg ttttgcccat gaaggacttt tcaccccaga
      661 cgccgaattg ttcgcacacc tggtggtcct catcagacag gagcgtaaag ttaagcagct
      721 ctttttccgc aaaacgggag agtttttcgg gtttatcggt gctgataccc agcacatcaa
      781 cgcccgcttt tttcaactca tccatgttat cgcgtaagcc gcaggcctgt acggtacagc
      841 cgggggtcat ggctttcggg tagaaataaa ccagaacacg ctgtccctgg aagtcggtca
      901 aattaacttg ttctccgtct tgatccggca agctaaattt cggtgcgata tcaccggctt
      961 tcagtggatt cattacttaa ctccatcctg ttcatcatgt tgggaataat tgacgacgtt
     1021 aatactgcct tgtgcattga gttctgtaca tagggctttg aacgcttgct caatatttgc
     1081 tgcgtccgca gatgcggggc tgtgggcggt gatctgaata tgcaactgcg cagcccgttc
     1141 attttcagca ggttgcgtgc gcgacaccag ctccgcaatg ttcatatgat gcgcgtcgaa
     1201 aagtgctgtg aagcgttcaa ttaaatgcgg ggagtctgca acatcgacct gaacccagac
     1261 agatgctggc attggcggac gcggacgcgc cgtcgtgcgc ttcatcacga ttaaaagatc
     1321 cagttcggca cctttcaacg gtaacgttga ttcaatcaga gtaatggcat tccatgaacc
     1381 ggaaagcagc atgataaacg tgaactcttc tcccagcatc gccaggcgac tgtcttcaat
     1441 attacagccg caactactga catgacgggt gatggtgttc acaattccag ggcgatcggc
     1501 acccaacgca gtgatcacca gataatgttg cgatgacagt gtcaaactgg ttattccttt
     1561 aaggggtgag ttgttcttaa ggaaagcata aaaaaaacat gcatacaaca atcagaacgg
     1621 ttctgtctgc ttgcttttaa tgccatacca aacgtaccat tgagacactt gtttgcacag
     1681 aggatggccc atgttcacgg gaagtattgt cgcgattgtt actccgatgg atgaaaaagg
     1741 taatgtctgt cgggctagct tgaaaaaact gattgattat catgtcgcca gcggtacttc
     1801 ggcgatcgtt tctgttggca ccactggcga gtccgctacc ttaaatcatg acgaacatgc
     1861 tgatgtggtg atgatgacgc tggagctggc tgacgggcgc attccggtga ttgccgggac
     1921 cggtgctaac gctactgcgg aagccattag cctgacgcag cgcttcaatg acagcggtat
     1981 cgtcggctgc ctgacggtaa ccccttacta caatcgtccg tcgcaagaag gtttgtatca
     2041 gcatttcaaa gccatcgctg aacatactga cctgccgcaa attctgtata atgtgccgtc
     2101 ccgtactggc tgcgatctgc tcccggaaac ggtgggccgt ctggcgaaag taaaaaatat
     2161 tatcggaatc aaagaggcaa cagggaactt aacgcgtgta aaccagatca aagagctggt
     2221 ttcagatgat tttgttctgc tgagcggcga tgatgcgagc gcgctggact tcatgcaatt
     2281 aggcggtcat ggggttattt ccgttacggc taacgtcgca gcgcgtgata tggcccagat
     2341 gtgcaaactg gcagcagaag ggcattttgc cgaggcacgc gttattaatc agcgtctgat
     2401 gccattacac aacaaactat ttgtcgaacc caatccaatc ccggtgaaat gggcatgtaa
     2461 ggaactgggt cttgtggcga ccgatacgct gcgcctgcca atgacaccaa tcaccgacag
     2521 tggtcgtgag acggtcagag cggcgcttaa gcatgccggt ttgctgtaaa gtttagggag
     2581 atttgatggc ttactctgtt caaaagtcgc gcctggcaaa ggttgcgggt gtttcgctta
     2641 ttttattact cgctgcctgt agttctgact cacgctataa gcgtcaggtc agtggtgatg
     2701 aagcctacct ggaagcggca ccgcttgcgg agcttcatgc cccggctgga atgattttgc
     2761 cggtgacctc cggtgattat gcaatcccgg tgaccaacgg tagtggtgct gtcggtaagg
     2821 cgctggacat tcgtccacca gcccagccgc tggcactggt ttctggcgtg cgtacccagt
     2881 tcacgggcga taccgcttca ttgctggtgg aaaatggtcg tggcaatact ctgtggccgc
     2941 aggtggttag cgtgctgcag gcgaaaaact acaccatcac ccaacgtgat gatgctggtc
     3001 agacactgac catcgattgg gtacaatgga accgtctgga cgaagacgag cagtatcgtg
     3061 gtcgttatca aatctctgtt aagccgcagg gttatcagca ggcggttacg gttaaactgc
     3121 tgaacctgga acaggcgggc aaaccggttg cagacgcggc ttccatgcag cgttacagca
     3181 cggagatgat gaacgttatt tccgccggtc tggataaatc tgcctctgac gccgcgaacg
     3241 ctgcgcaaaa tcgtgcctcc accactatgg acgtacaaag tgcagctgat gacaccggtt
     3301 taccgatgct ggtcgtacgc gggccgttca atgtggtttg gcaacgtctg ccagcggcgc
     3361 tggaaaaagt gggcatgaaa gtgaccgaca gcacccgttc gcagggtaac atggccgtaa
     3421 cttataagcc gctgtctgac agcgactggc aggaactggg cgcgagcgat ccaggcctgg
     3481 catccggtga ctataaactg caggttggcg atttagataa ccgcagcagc ctacagttca
     3541 tcgatccgaa aggtcatact ctgactcaga gtcagaacga cgcgctggta gctgtcttcc
     3601 aggctgcgtt tagcaagtaa aaatacaggg ctggagtcat ccggcccttt tttctgatat
     3661 gatacgcaaa cgtgtgcgtc ggcagaaaaa tgcaatttta gcggtaattc gcacgaaatt
     3721 tgtttgtcgg acgtaggtcg gataaggcgt tcttgccgca tccgacaaaa catccggcac
     3781 accagacagc aaaagatttt aaaacgttaa ttcacaccca ggagtgataa agatgcaaaa
     3841 gcaagctgag ttgtatcgtg gtaaagcgaa aaccgtatac agcacggaaa acccggacct
     3901 gttggtgctc gaattccgca atgatacgtc agcaggggat ggcgcgcgca ttgagcagtt
     3961 tgatcgcaaa ggtatggtga acaacaagtt caactacttc attatgagca aactggctga
     4021 agcgggtatc ccgactcaaa tggagcgtct gctctccgat accgaatgtc tggtgaaaaa
     4081 gctggatatg gtgccggttg agtgtgtcgt gcgtaaccgt gctgctggct ctctggtgaa
     4141 acgtcttgga atcgaagaag gtattgagct gaacccgccg ctgttcgatc tgttcctgaa
     4201 aaacgatgcc atgcacgatc cgatggtcaa cgaatcttac tgcgaaacct ttggctgggt
     4261 gagcaaagag aacctggcgc gtatgaaaga gctgacctac aaagcgaacg acgtgctgaa
     4321 aaaacggttc gatgatgctg gtctgattct ggtcgacttc aagctggagt ttggtctgta
     4381 caaaggtgaa gtggtactgg gcgatgagtt ctccccggac ggcagccgcc tgtgggacaa
     4441 agaaacactg gagaaaatgg acaaagaccg tttccgccag agcctcggtg gcctgatcga
     4501 agcctatgaa gccgtcgccc gccgcctggg tgtacagctg gactgatttt tctgttcatc
     4561 atcttgccgt gcagctggca cggcaagaca accgctctcg gaatatatgc attgaacgct
     4621 cattcctccg ccatttcatc ccgctttcct gtggtaatct tcctctgaac cacctacgat
     4681 catttctata atgaatatat tgttgaggta tctatgcgtt ggcaagggcg acgtgaaagt
     4741 gacaatgttg aagacaggcg caacagctcc ggtggtccgt ctatgggcgg tcccggtttt
     4801 cgcctgccaa gcggtaaagg cgggctgatt ttactgatag tcgtgctggt tgcaggctac
     4861 tatggtgttg atttaaccgg gttaatgact ggacagccgg tttcccaaca acaatcaacg
     4921 cggtccatta gccctaatga agacgaagct gcaaaattca cctcggtgat tctggcaacc
     4981 acggaagaca cctggggaca acagttcgag aagatgggta agacctatca gcaaccgaag
     5041 ctggtcatgt accgtggaat gacgcgcacc ggctgcgggg cgggccagtc cattatgggg
     5101 ccgttctatt gcccggcgga tggcacagtt tatatcgatc tctccttcta tgatgacatg
     5161 aaagacaaac ttggcgcgga tggcgatttt gcccaggggt acgttatcgc ccatgaagtc
     5221 ggtcatcatg tgcagaaact gttaggcatc gagccgaaag ttcgtcaact gcaacaaaac
     5281 gcgacgcagg cggaagtgaa ccgcttatct gtgcgtatgg aactccaggc cgactgtttt
     5341 gccggtgtct gggggcataa catgcagcag caaggcgttc tggaaaccgg cgatctggaa
     5401 gaggcgctga atgcggcgca ggccatcggc gatgaccgtt tacaacagca aagtcagggg
     5461 cgagtagtac cagacagttt cacacatggc acttctcagc aacgctacag ctggtttaaa
     5521 cgtggtttcg acagcggcga tccggcacaa tgcaatactt ttggtaaaag catttaattt
     5581 ccggggcagg gatggctgaa ctgactgcgc tttacacatt aacagcgcaa atgaaacgtg
     5641 aagggatccg ccgcttgctg gtgttgagcg gggaagaggg ttggtgtttt gatcatgcgc
     5701 ttaagttgcg tgatgcctta cttggcgact ggctgtggat ttcgccgcag ccagatgctg
     5761 aaaaccactg ttctccctcg gcgctacaaa ctttacttgg gcgcgagttc cggcatgcgg
     5821 tattcgacgc ccgccacggc tttgatgccg ctgcctttgc ggcacttagc ggaacgttga
     5881 aagcgggaag ctggctggtt ttgttactcc ctgtatggga agagtgggaa aaccaacctg
     5941 atgccgactc gctgcgctgg agtgattgcc ctgaccctat tgcgacgccg cattttgtcc
     6001 agcatctcaa acgcgtactt acggcggata acgacgctat tctctggcgg caaaaccagc
     6061 cgttctcgtt ggcgcatttt actccccgta ctgactggca ccccgcgacc ggcgcaccac
     6121 aaccagaaca acagcaactc ttacagcagc tactgaccat gccgccgggc gtggcagcgg
     6181 taacggctgc gcgtgggcgc ggtaagtcgg cgctggcagg gcaactcatt tctcgtattg
     6241 cgggcagtgc gattgtcacc gcgcccgcaa aagcggcaac ggatgtactg gcacaatttg
     6301 cgggcgagaa gtttcgcttt attgcgccgg atgccttgtt agccagcgat gagcaagccg
     6361 actggctggt ggtcgatgaa gccgcagcca tacctgcgcc gttgttgcat caactggtat
     6421 cgcgttttcc tcgaacgttg ttaaccacta cggtgcaggg ctacgaaggc accggacgtg
     6481 gttttttgct gaaattttgc gctcgctttc cgcatttaca ccgttttgaa ctgcaacagc
     6541 cgatccgctg ggcacaggga tgcccgctgg aaaaaatggt tagtgaggca ctggtttttg
     6601 acgatgaaaa cttcacccat acaccacaag gcaatatcgt catttccgca tttgaacaaa
     6661 cgttatggcg aagcgagcca gaaacgccgt taaaggttta tcagttattg tctggtgcgc
     6721 actaccggac ttcgccgctg gatttacgcc ggatgatgga tgcaccaggg caatattttt
     6781 tacaggcggc tggcgaaaac gagattgccg gagcgctgtg gctggtggat gaggggggat
     6841 tatctcaaca actcagtcag gcggtatggg caggttttcg tcgcccgcgg ggtaatctgg
     6901 tggcccagtc gctggcggcg cacggtagca atccactggc agcgacattg cgtggacggc
     6961 gggtcagccg gatagcagtt catccggctc gtcagcgcga aggcgttggg caacagctca
     7021 ttgccagcgc tttgcaatat acgcaagacc tcgactatct ttcggtgagt tttggttaca
     7081 ccggggagtt atggcgtttc tggcaacgct gcggttttgt gctggtacga atgggtaatc
     7141 atcgtgaagc cagcagtggt tgctatacgg cgatggcgct gttaccgatg agtgatgcgg
     7201 gtaaacagct ggctgaacgt gagcattact gtttacgtcg cgatgcgcaa gctctcgcgc
     7261 agtggaatgg cgaaacactt cctgttgatc cactaaacga tatcgtgctt tctgacgacg
     7321 actggcttga actggccggt tttgcttttg ctcatcgtcc gctattaacg tcgttaggtt
     7381 gcttattgcg tctgctacaa accagtgaac tggcattacc ggcgctgcgt gggcgtttac
     7441 agaaaaatgc cagtgatgcg cagttatgta ccacacttaa acttgcaggc cgcaagatgt
     7501 tactggtccg tcagcgggaa gaggccgcgc atgcgctgtt cgcacttaat gatgttcgca
     7561 ctgagcgtct gcgcgatcgc ataacgcaat ggcaattttt tcactgactc cttcaatttt
     7621 ctcccatggt cattgtgagc cagcggcgta aaattaatga catcagttaa ggagttcgcc
     7681 atgaaacatg accattttgt tgttcaaagc ccggataaac ctgtgcaaca gttgttactg
     7741 cttttcctcg gtgtcgggga taactcggtg gcaatggggg aaataggcag ttggtttgca
     7801 ccgctgtttc ctgatgcgct ggtggtgagt gtcggtggcg cggagccgag cggtaatccg
     7861 gcggggcgtc agtggttttc ggtgcagggt attacggaag ataatcgcca ggcgcgtgtg
     7921 gatgccatca tgccgacgtt tattgaaacg gtacgctact ggcagaaaca gagtggagta
     7981 ggggctaacg ccacggcgtt aatcggtttc tctcaaggcg cgattatggc gctggagagt
     8041 attaaagccg aaccgggcct tgcttcacgc gtaattgctt ttaacggacg ctatgcgagc
     8101 ctgccggaaa ccgcgtctac agcaacgaca attcacctga ttcatggcgg tgaagatccg
     8161 gttatcgatc tggcgcatgc ggttgcggcg caggaagcgt taatcagtgc cggtggtgac
     8221 gtgacgctgg atatcgtgga ggatttaggc catgcgatcg acaatcgcag tatgcaattt
     8281 gccctggatc acttgcgtta taccattccg aaacattatt tcgacgaagc gctaagtggc
     8341 ggtaagcctg gcgatgatga tgtgattgaa atgatgtaaa agacagatta cctggcctga
     8401 taagacgcgt gagcgtcgca tcaggcatcg ttcaccattg ccggatgcgg cgttaacgcc
     8461 ttatccggcc tacggttgag cactcagctt acttcttcgg ttgatccttt ttcggccagt
     8521 cgtcgtcatc gtcccactta tcgttgaaat cacgatgcgg gggaagctcc ggcttgttgg
     8581 cgagaaattt cttgtggtcg acgcgcttga gatctttaat cacgttcagc aggacgccta
     8641 ccaaaaagac aatcaccaga atccaccaat atttagccag ccagtccatg cttatttcct
     8701 cttgcagaac cactcatcag gcgacgagct gttccatgat acgttgatac atacgggcaa
     8761 gtagctgcag gtcggcagcg ttcacacatt cattaatttt atgaatagtg gcattgaccg
     8821 gcccgagttc caccacctgc gcccccatgc gagcaataaa gcgcccgtcg gacgttccgc
     8881 ctgtggtcag tagctgcggt ttaatttcat tatagtgctc aaccgcgtta acgaccgcat
     8941 ccaccagttt accgcgcgcg gtcaaaaatg gctgcccgga aagccaccaa tccaccgtat
     9001 agcgcagttg atgtttttca agcagggcaa gcacctgcgc tttgatcatc tcatcagtca
     9061 gttcggtgct gaagcggaag ttaaactgca caaacagttc acccggaata acattgttac
     9121 tgcccgttcc cgcctgaata ttagcaatct gcatactggt cgccgggaaa aattcattgc
     9181 cctgatccca ctcaatagcc actaattcat taaggaaagg tgctgcgcga tgtactggat
     9241 tgtcagccag atgcgggtag gccacatgcc cctgaacgcc atgaatggta aggttgcagg
     9301 ttaacgatcc gcgacgacca tttttcacca catcaccaac cacttcgata ctcgacggtt
     9361 cgccgaccag gcagtaatcg agacgctcat tacgtgccat caacgcttcg acgactttta
     9421 ccgtaccgtt gtgggcactg gcttcttcat cagaggtgat cagaaatgcc agtcgccccg
     9481 tatggttggg atgttgtgcg acaaagcgtt ctgccgctac caccatcgcc gccagcgagc
     9541 ctttcatatc tgccgcaccg cgcccgaata acatgccatc acgaatggtg ggttcaaacg
     9601 gcggattgat ccaacgatcg gcgtcgccag gcggcaccac gtcggtatgc ccggcaaagg
     9661 ctaacgtttc accttgccca cgccatgccc aaaaattctg cgtatcggca aagtccatgc
     9721 gttcaacggt aaaaccgatc gcctgcaaac gttcaatcaa caaagcctgg catcctgcgt
     9781 catcaggact cagggaaggg cggcgaataa gctgttgtgt cagctcaata accgggcacg
     9841 acatagacta cacctcatgg aaaaattgct gataactgga atcactgaaa cccagcagca
     9901 taggcttacc aggcgcgcag agcaatggac gtttgataat tgaaggcatt tcagtcatta
     9961 atgccgccgc agaggccgca tcggtgattt tattgcgggt ggtttcgtcc agtttacgcc
    10021 aggttgtacc acgggtgttc agtaacgctt cccagcctaa ttcgttgata aaaccgttca
    10081 ataattcgct gtccagccca tcgacgcggt aatcatgaaa acgatagtcg atgttattgg
    10141 cttccagcca acggcgagcc tttttaatgg tgtcacaatt tttgatgccg taaagtgtaa
    10201 ccataatgaa tcctttttcg atctatgaga ataaatactc atttaagggt gaaaacattt
    10261 tgcctgcaaa tgattatcag gaaatataac attatcgaag tattcaaatt aacaactatt
    10321 aaataatatt aaacattttt aacgtaaaca ttaagaatat tcatcttgtt atctgtctgt
    10381 attttaacca gaattaaatc agtattagat gccgtatgaa tatctcgaaa tgttgctgtg
    10441 tatcacatac aaattatcac cgcaggacca tagtatttac ataaggtttg tcccccggag
    10501 gtagtcatcg cagcaatcga gtaaattagc ttcaccacgg tatattgttt ccgtagaata
    10561 cccataatta taagagaggt tgttatgatt gaacgtgaac tggggaactg gaaagacttt
    10621 atcgaagtta tgcttcgtaa gtaattcctg agacaaagta caaacagcaa gaacccgctg
    10681 agcaggttct taatcggaaa gttgaaaaag gcgacacatt agcatgtcgc cttttttatt
    10741 gcttattccg ggcgcggctt cagcgggaag cggcggcgca ccagtacaaa gaacagcggc
    10801 acgaagtaaa tagccagaat agtggccgaa atcatcccgc ccattacgcc agtacccacc
    10861 gcatgctgac caccggaacc ggcacccgtg ctggttgcca ttggcaatac gccgaagata
    10921 aatgccagcg aggtcatcag aatcgggcgt aaacgctgac ggcaggcgtg gagcgtcgct
    10981 tcaaacaggt cgtggccttt ttggttcatc tcgttagcaa actcgacgat caggatggcg
    11041 tttttcgccg ataaaccaat gaccgttaac aggcccacct ggaagtaaac gtcgttttcc
    11101 agcccgcgca tccaggttgc cagcagcgcg ccgataaccc ccagcggcac gaccagcatt
    11161 accgagaacg gcaccgacca gctttcatac aacgccgcca gacacaggaa taccaccagc
    11221 aaggaaatgg cgtacagcgc cggagcctgc gcgccggaaa gccgctcctg atacgacatc
    11281 gccgtccact ccagaccaaa gccgtttggc aactgcttca ctaacgattc cattatatcc
    11341 atcgccgtac cggtactgac ccccggtgcg gcttccccaa caatctcaac cgcagaataa
    11401 ccgttatagc gttccagacg cggcgagcca gtctcccagc gtgaggtcgc gaaagcagag
    11461 aagggcacca tgccgccatc tttatttcgg acataccaga gattaatgtc atctggcagc
    11521 atgcgatacg gcgcagctgc ctgcacatag actttcttca cacgaccgcg atccataaag
    11581 tcattcacat agctcgaacc ccaggcggtt tgcagtgtgt cgttaatatc gtcgatagca
    11641 acgcccagcg cctgagcttt acgctggtcg atatcaatct gcaactgcgg actgtcatcg
    11701 aggccgttat ggcgcacacg ggttagctcc gggttttccg ccgccagcgc cagcaactgg
    11761 ttacgtgctg ccatcagcgc atcgtgacct gctccagcgt ggtcctgcaa ctccatatca
    11821 aaacccgcag aactaccaag accgctaatt gctggcgggc tgctggcgat aacgcgagct
    11881 tctttaatct tgttaaacgc ctttgttgca cgctcgataa tggcaaacga ggtgccggtc
    11941 ttactgtcgc gttcgctcca gtctttcagg cggataaaca ttcgcgccac gttttgcccg
    12001 ttacccccag ggccagaacc aacggtggca aacaccgaca tgatgttgtc tttttcatgg
    12061 gtgaagtaat atttctcgat ttgctcaacg actttcaggg tctgttgttg ggttgaaccg
    12121 ctgggcaatt gtaccgaggt agtaaacatg ccacggtctt ccagcggtaa gaacgacgtc
    12181 ggcaaacgca ggaacaggaa caccatgccg ccaagcagca ggacataaat cacaatccag
    12241 cgcaggctgc ggtggagaat tttcgccacc cctttttcgt agcgttcggc gttgcggtta
    12301 aacatctggt taaaccaggc aaaaaagcct ttttgcccgt gatgctcacc ttttttcagt
    12361 ggcttaagta gtgtggcaca cagagccgga gtgaggatca tcgctaccag tactgacagc
    12421 accatcgccg caacaatggt aatagagaac tggcgataga tggcaccggt ggtgccgccg
    12481 aagaaggcca ttggtacaaa taccgccgaa agcaccatcg caatcccgac cagtgccccc
    12541 tggatctgcc ccatcgattt acgtgtggct tcgcgaggag tgagtccttc ctcactcata
    12601 atacgttcga cgttttccac caccacgatt gcgtcatcca ccagcagacc gatcgccagt
    12661 accatcgcga acatggttaa ggtgttgacg ctgtaaccga aggcgtaaag tacggagaag
    12721 gttcccatca acaccaccgg cacggcgata gtgggtatca gcgtggcgcg gaagttttgc
    12781 aggaacagat acataacgag gaaaaccagg gcgatagctt ccagcagcgt tttcaccacg
    12841 tcttcaatgg aggctttaac aaacgaggtt gtttcatacg ccaccttgta ttccagtccg
    12901 tgcgggaagt actgcgccag ctcgtcgaga cgattgagca ccagctccct gtcgccattt
    12961 cgtttgcgcc ggaggccagt tttaccccca gcccggaggc tggcttacca ttgaagcggc
    13021 taagataatc gtatttctcc gcccccattt cgacggtggc gacatcgccc agccttacct
    13081 ctgagccgtc ttgattcacc cgcaaggtga tatcgcggaa ctgttctggt gtttgcagca
    13141 gtgactgggc gttaatggtg gcgttgagcg cctgcttatc gacggaaggt gtaccaccaa
    13201 gttgcccaac cgcaatctgc gcgttctgtg actcaatggc atcagtgaca tctttagccg
    13261 tcatctggaa actgttgagt ttcgccgggg ccagccagat acgcatggaa tattgcgaac
    13321 cataggcatc gatatccccg acgccattca cgcggcttaa cgggtcctga atattactgg
    13381 caacataatc ggcaatatcc tgtttatcca tcgaaccatc ggtagagacg aaagcaatgg
    13441 tcagaatatt ggtatcgccg gttttacgca ccgtcacgcc ctgattttgc accgcctgcg
    13501 gtaactttcg catggctgat tgcagctggt tttgtacttg ctgcacggct tcgtccggat
    13561 cggtgcctgc tttaaaactt aaagtgacag atgcctgacc ggtgccactg ctctgagatg
    13621 acatatacat gagattatcg aggccggtca tattttgctc gataacctgg ggcacggtgt
    13681 tttccagcgt ctgggccgat gcgccgggat agttagcggt cactcgcaca ttcggtggcg
    13741 cgagatcggg gtattgttca acgggcaatg aaaaaatcgc tagggtccct gtcagacaca
    13801 acaggattgc cagcacccag gcaaaaatgg ggcgatcaat aaagaaattc gccattaaaa
    13861 gaggacctcg tgtttctgcg tatcgttgta ggcttgactt gcttcactgt agcggcaagg
    13921 tacgagccaa tcgtggagaa aaaaggagtt aatgtaaatt atcatgccct tttatactga
    13981 accttaagtg caagtattct ttggtcagta ggaggcatta catcaactga ctttcctcac
    14041 cctctgcaga gcgaaagcta atactcacta acgtgccgcc gccggaaggt tgtgaaaaag
    14101 tcagcgtccc acccagccgt tccgcgcgtt cgcgcatgat attcagacca taatgacctt
    14161 cgggttcttt cggttcaccg ataccaatcc cgttatcacg gatataaacc gtgtgattgc
    14221 cgtccggcgc ggtgacgcaa ctgacggcga tttcgctggc gttggcgtgc ttcatcgcat
    14281 tcagcaccgc ttcgcgaata atttgcaaca aatgcacctg catttgcgca tccagcgcaa
    14341 gggttggcag acggcagtcg agggtcagtt tggcgctggt ttgattttgt aacgtatcca
    14401 gcatttccct caacgcggag gggagatccg cctgctgcag cgtcaggcgg aaagtagtca
    14461 acagctcgcg taactgccga taagcatcat tcaacgcctg ggaaaaatcg gccatgatac
    14521 tttgtgcggt ggcgttatct tccggtatcg aacgcttcag taacgtcaac tggatacgta
    14581 agtaagaaag tacctgagcc agcgagtcgt gcaattcgcg ggcgatggtt gcacgttctt
    14641 ccatcaacaa taaatgctga aaatgcttct gcgcctgatt aaagtacaaa ccgcgtccca
    14701 gcatcgacga aacgctgtta agcagcggtt ctgatgatga aacgtgacta ttttgccagt
    14761 gcagttcgcc gtaaaccgtc tcttgcattg tcaccggtaa aatctgcatc ggcaattccg
    14821 ggtttggttg cccttcgcta atccgccagt tttcaccgac atttaactcc agatattcag
    14881 ccgcttcatt gtcgcgaaca atctgcaaaa tatggcggaa acaatgcaca tcaatctggc
    14941 ttgtgttcag cgcctgcgaa cattgataca acacctccag acgacgcttg gcctcgtgga
    15001 gatcgcgggt cttttcttct actgacgcct ccagcgaaag gtacaattta tgcagctcgc
    15061 tcgacatctg gttaaaggtt tttgcaagca gaccaagctc attcggcaga ctggtatcca
    15121 gcggcggcga gtcgaactgc ccgtgttcaa tacgttgact ggcggtaacc agctgattca
    15181 gcggggcaac cacctgatgg cgtatacggc gcaaagtaaa aaagaccagc gtgaaaatac
    15241 cgataccgcc agccagggaa atcgccacca ccagcagcat tttgcgttca gcgtagtgct
    15301 gtaaagccag cacgaacagg tctatctgat taacataatt attaatattg gcctgatacc
    15361 acggcaaatc gcccttgctg agccgattat tcatctccag ccagttggca ttcagatgcg
    15421 catagcgagt ttttactgct tctggcacat accagacgtt gagattggtt aataccggtg
    15481 aatgcagtgc ctgctgaaac aactggcgat gtgcattgag ttgtggactg ccactttgca
    15541 agtcgtagcc caggcggtaa ctctgcatac gcagcgatcc ggcaatattg atagcctcag
    15601 cgtcgcgcaa actgctcgcc agagttagca gagcgatacc cgtggaaaga atcgacagca
    15661 gcacaatgta aaaaaaggcc cgggccagac tggccgagac gggtcgttta acaatcacac
    15721 gcgtcttctc cacaaaaaat cattaatgtt ccagttcgct gaaacgcaat ttagtcagtg
    15781 atgggattat ttgagctgcc acagtttata gcgaaatagt tacttattct gggcacatga
    15841 acattgccga ttcccctgta agtcgggtaa taacaacact catataaaga ataaggtttt
    15901 tacaaccaaa aaagaaggtc gttatgaatc gttttattat ggccaacagt cagcaatgtc
    15961 tgggttgtca tgcttgtgaa atcgcctgtg tcatggctca caatgatgag caacatgtcc
    16021 tgagccaaca ccattttcat ccccgaatta cggttatcaa acatcagcag caacgtagtg
    16081 cagtgacctg tcaccattgt gaagatgcgc cctgcgcccg tagctgccct aatggcgcaa
    16141 tcagccacgt tgatgacagc attcaggtca atcagcaaaa gtgtattggc tgtaaatcct
    16201 gcgtggtggc ctgtccgttt ggtacgatgc aaatcgtcct gacacccgtc gcggcaggaa
    16261 aagtaaaagc cacggcgcat aaatgcgacc tttgtgcagg gcgcgaaaac ggtcctgcct
    16321 gtgtcgagaa ttgcccggcg gacgcgctgc aactggtcac tgacgtcgca ctctccggca
    16381 tggcgaaatc ccgccgcttg cgcaccgcac gtcaggagca tcaaccgtgg catgccagta
    16441 ccgctgcaca agaaatgccg gtaatgagta aagtcgaaca aatgcaggca acgcccgcgc
    16501 gtggcgagcc ggataaactg gcgattgaag cgcgcaaaac cggttttgat gaaatttatc
    16561 tgccatttcg cgccgacctg gcacaacggg aagcctcgcg ctgccttaag tgcggcgagc
    16621 acagcgtttg tgaatggacc tgcccgctgc ataaccatat tccgcagtgg attgaactgg
    16681 tgaaagccgg aaacatcgac gccgccgtcg agctttctca ccagaccaac accctgccgg
    16741 aaattaccgg acgcgtttgt ccgcaagacc gtttgtgtga aggtgcctgt actattcgcg
    16801 atgagcacgg cgcggtaact atcggcaaca ttgaacgcta tatttcagat caggcgttgg
    16861 cgaaaggttg gcgtcctgac ttaagtcatg tcaccaaagt ggacaagcgg gtggcgatta
    16921 tcggggcagg tccggcaggg ctggcctgtg cggatgttct gacccgcaat ggcgtggcgg
    16981 tgacggtgta cgatcgccat ccagaaatcg gtggcttgct cactttcggc attccttctt
    17041 tcaaactgga taaatccctg ctggcacgcc gtcgggaaat cttcagcgcg atggggattc
    17101 acttcgaact caattgtgaa gtgggtaaag atgtctcttt ggattcgctt ttggaacaat
    17161 acgacgcggt cttcgttggc gtaggcactt accgttccat gaaagcgggt ttacccaatg
    17221 aagatgcgcc gggcgtttat gacgcgctgc cgttcctcat cgccaacact aaacaggtga
    17281 tggggctcga agagctaccg gaagagccgt ttatcaatac cgccggactt aacgtcgtgg
    17341 tactgggcgg cggcgacacc gcgatggact gtgtgcgtac tgcgctgcgc cacggcgcga
    17401 gtaacgtcac ctgcgcttat cgtcgtgatg aagctaacat gccaggctcg aagaaagagg
    17461 tgaagaacgc ccgcgaagag ggggccaact tcgaatttaa cgtccagccg gtggcgcttg
    17521 agctgaatga acaaggtcac gtttgcggga ttcgtttcct gcgcacgcgt cttggcgagc
    17581 cggatgccca ggggcgtcgg cgtccagtac cggtggaagg cagtgaattt gtcatgccag
    17641 ccgacgcggt gattatggcg tttggcttca atccgcacgg gatgccgtgg ctggagtcgc
    17701 acggtgtaac ggtagacaaa tggggccgca tcatcgcgga tgtggaaagc cagtaccgtt
    17761 accagaccac caatccgaaa atcttcgccg gtggcgacgc cgtgcgtggt gcggatctgg
    17821 tggttaccgc aatggcagaa ggacgtcatg cggcacaggg gattattgac tggctggggg
    17881 taaaatcagt caaatctcac tgatagcctg cgcagacaaa cccgacttca cagcgtaaga
    17941 taattgttca tttcgcgctg tggagtcggt atgacgcaac aaatcaccct cattaaagac
    18001 aaaattctct ccgataacta tttcaccctg cacaacatta cctacgatct cacgcgcaaa
    18061 gatggcgaag ttatccgcca taaacgtgaa gtttacgatc gcggtaatgg tgcgacgatc
    18121 ctcctgtaca acgcgaagaa aaagaccgtg gttctgattc gtcagttccg tgtcgctacc
    18181 tgggttaatg gcaatgaaag cgggcagctg attgaaacct gcgccgggct gctggataac
    18241 gacgaaccgg aagtgtgcat tcgtaaagaa gcgattgaag agacgggcta tgaagtgggc
    18301 gaagtgcgca aattatttga actgtatatg tcgccaggcg gtgtgactga gctaatccac
    18361 ttttttatcg ccgaatacag tgacaatcag cgcgctaacg ccggtggcgg tgtcgaagat
    18421 gaagatattg aagtgctcga gctgccgttc agccaggcgc tggagatgat caaaaccggc
    18481 gagatacgtg acggtaagac ggtgttattg cttaactatt tgcaaacgtc acatttaatg
    18541 gactgaaaaa taacaataat atttcgttgt ttattattgg ctcaatccga caaatccgat
    18601 tgagccgcgc tacctgcgca acgaagatac gacttgtgct gtttgtttga acttctgggg
    18661 tcgtaccgtc catgcgctat cgcattttcc ttctcttttt tttcgctttg ttgccgacgt
    18721 ctttggtgtg ggcggcacca gcgcaacggg cgttttccga ctggcaggtc acctgtaata
    18781 accaaaactt ctgcgtggcg cgtaatacgg gcgatcataa tggactggtg atgaccctga
    18841 gccgcagcgc cggggcgcat accgatgccg ttttacgtat tgagcgcggc ggattgaagt
    18901 cgccggaggc gtcagaaggg gagatagcgc cacggctgct gttagatggc gagccgttgg
    18961 cgttaagtgg tgacaagtgg cggatttcac catggttatt agtaaccgat gatacggcaa
    19021 ccatcaccgc gtttttgcag atgattcagg aagggaaggc gatcacctta cgcgacggca
    19081 atcagaccat ttcgctgagt ggcttaaaag cggcgttgtt gtttattgat gctcagcaaa
    19141 agcgcgttgg cagtgaaacc gcgtggatca agaaagggga cgaaccgccg ctcagcgtac
    19201 cgcccgcgcc tgcgctgaaa gaggtcgcgg tggttaaccc aacgccgacg ccactctcac
    19261 tcgaagaacg caacgatttg ctggattatg gaaactggcg gatgaatggt ctgcgctgct
    19321 cgcttgatcc attgcgtcgt gaggtgaatg tcactgcgct gactgatgat aaagcgctga
    19381 tgatgattag ctgtgaggca ggggcctata acaccattga tttggcatgg attgtgtcgc
    19441 gtaaaaatcc gctggcctcg cgcccggttc ggttgcgttt gccgttcaac aacgggcagg
    19501 agacgaatga actggaactg atgaacgcaa catttgatga gaaatcgcgt gaactggtga
    19561 ccttagcgaa agggcgcgga ttaagcgatt gtggcattca ggcgcgctgg cgctttgacg
    19621 gtcagcgttt tcgcctggtg cgttacgccg cagaacccac ctgcgataac tggcatgggc
    19681 cagacgcctg gcccacgttg tggatcaccc gttaaacaaa atggcgggga catgtaggcc
    19741 ggataagacg ctgtaggccg gataagacgc gtcagagtcg catccggcaa tcagcgtccg
    19801 gcaatcagca tccggcgatc accatcaggc acctttcact cccagcacct tatgcgcttt
    19861 tgccacaata ttctcggcgg taaagccaaa gaacgggaac agcttatccg ccggagcaga
    19921 ttccccataa cctgtcatcc caacaatcgc ccctttcaaa ccaacatact tgtaccagta
    19981 atcggcaata cctgcttcca ccgccacgcg agccgcaacg ttagaaggca acaccgactc
    20041 ccgatattcc tcatcctggg cgtcgaaaat atcagtcgag ggcagggaaa ctacgcgtac
    20101 attgcgacct tctcccgcta atttctctgc cgcttgcagg gggatttcca tctctgaacc
    20161 ggtggcaatc aaaataatat ctggcttacc gccgctgtct ttcagcacat aaccgccacg
    20221 ggcaatctct tttacctgat ccggcgtacg ttccacctgg gccagattct gccttgagag
    20281 gatcagtgcc gtcggtccgt tgtggcgctc aaccgccagc ttccagccca ccgccgcttc
    20341 cacctgatcg cacggtcgcc aggtgctgaa atttggcgtt aagcgcaggc tggccagttg
    20401 ctcaacagcc tggtgcgtcg gaccatcttc gcccaggcca attgagtcgt gggtataaac
    20461 cataatctgc cgcgctttca tcagtgccgc catccgcgcg gcgttacggg cgtattcaac
    20521 aaacatcagg aacgtggcgg tatacggcac aaagccgccg tggtgcgcga tgccgttggc
    20581 tatagcggtc atgccaaatt cacgcacccc gtagtgaatg tagttgcccg ccggatcttc
    20641 cttcagcgaa acagaacctt tccagatggt caggttgctg gagccagatc cgccgaaccg
    20701 ccgagcaact caggcagcat cggc
//
LOCUS       DAJVUY010000066        20661 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.066, whole genome shotgun sequence.
ACCESSION   DAJVUY010000066 DAJVUY010000000
VERSION     DAJVUY010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20661
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.066"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..876
                     /locus_tag="OQQ72_002162"
     CDS             <1..876
                     /locus_tag="OQQ72_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CS1-pili formation C-terminal domain-containing
                     protein"
                     /protein_id="HCS2011886.1"
                     /translation="DQTSWQLSHTFYNDSFSHKELGVTVGGLNTDTINSAVNGRWDGQ
                     YGNVYATVSDSYDRKNHDHLSAFTGTYSSTLAVSRYGVNLGASGTDDLLGAVLVDVKG
                     FSEQDEESQDLQLEARVAGSRTLQLGQSDSVLFPYPGFQSGFVEVNDSSQGNQQGTTN
                     IINGAGNRELMLLPGKLRYREVSASFNYNYIGRLLLPAAVKKFPIVGLNSAMLLVAED
                     GGFTLEINGSEKELYLLSGQQFLKCPLSVEKKRASIRYSGDVTCSVVTYSQLPELKQP
                     KLRGNVQTAQREVAP"
     gene            873..1962
                     /locus_tag="OQQ72_002163"
                     /pseudo
     CDS             873..1962
                     /locus_tag="OQQ72_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001352530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
     gene            complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ72_002164"
     CDS             complement(2050..3348)
                     /gene="exuT"
                     /locus_tag="OQQ72_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter ExuT"
                     /protein_id="HCS2011887.1"
                     /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST
                     QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSRGGLA
                     IARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM
                     HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM
                     SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA
                     DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI
                     GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFSLVVGALADTIGFSP
                     LFAVLAVFDLLGALVIWTVLQNKPAIEVAQESHNDPAPQH"
     gene            3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ72_002165"
     CDS             3831..5243
                     /gene="uxaC"
                     /locus_tag="OQQ72_002165"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HCS2011888.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ72_002166"
                     /pseudo
     CDS             5258..6745
                     /gene="uxaA"
                     /locus_tag="OQQ72_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
     gene            6828..7380
                     /locus_tag="OQQ72_002167"
                     /pseudo
     CDS             6828..7380
                     /locus_tag="OQQ72_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
     gene            complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ72_002168"
     CDS             complement(7385..8629)
                     /gene="sstT"
                     /locus_tag="OQQ72_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HCS2011889.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ72_002169"
     CDS             complement(9245..10210)
                     /gene="alx"
                     /locus_tag="OQQ72_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HCS2011890.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINARVNYRHDKQRGE"
     gene            complement(10494..11480)
                     /locus_tag="OQQ72_002170"
     CDS             complement(10494..11480)
                     /locus_tag="OQQ72_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311996.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS2011891.1"
                     /translation="MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFAN
                     DFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPLASNLAE
                     VDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYL
                     DGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAHGVVVMD
                     YGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKLCFVPRGSQMQDLTQPQHI
                     NTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL"
     gene            complement(11559..12242)
                     /locus_tag="OQQ72_002171"
     CDS             complement(11559..12242)
                     /locus_tag="OQQ72_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HCS2011892.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHSQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(12319..12822)
                     /locus_tag="OQQ72_002172"
     CDS             complement(12319..12822)
                     /locus_tag="OQQ72_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS2011893.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ72_002173"
     CDS             12907..14043
                     /gene="rlmG"
                     /locus_tag="OQQ72_002173"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HCS2011894.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQSWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            14328..14642
                     /gene="higB"
                     /locus_tag="OQQ72_002174"
     CDS             14328..14642
                     /gene="higB"
                     /locus_tag="OQQ72_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin HigB"
                     /protein_id="HCS2011895.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNMIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            14639..15055
                     /gene="higA"
                     /locus_tag="OQQ72_002175"
     CDS             14639..15055
                     /gene="higA"
                     /locus_tag="OQQ72_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HCS2011896.1"
                     /translation="MIAIADILQAGEKLTAVVPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ72_002176"
     CDS             complement(15100..17118)
                     /gene="fadH"
                     /locus_tag="OQQ72_002176"
                     /EC_number="1.3.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HCS2011897.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSESGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELNARRAIAQGTRLALEI"
     gene            complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ72_002177"
                     /pseudo
     CDS             complement(17544..19895)
                     /gene="ygjK"
                     /locus_tag="OQQ72_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19912..>20661)
                     /gene="ygjJ"
                     /locus_tag="OQQ72_002178"
     CDS             complement(19912..>20661)
                     /gene="ygjJ"
                     /locus_tag="OQQ72_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HCS2011898.1"
                     /translation="VPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWW
                     GDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYD
                     DKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRAD
                     GLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGG
                     RFATAFDSRFYMKNASHDPSDQIFLMQYFYW"
BASE COUNT         5036 a         5413 c         5433 g         4779 t
ORIGIN      
        1 gatcaaacgt catggcagtt atcgcatacc ttttataatg attcattcag ccataaagaa
       61 cttggcgtaa ccgtcggagg cctgaacacc gataccataa acagcgcggt taacgggcgt
      121 tgggatgggc aatacggaaa tgtctacgct accgtatctg atagttatga ccgtaagaat
      181 catgatcatc tttcggcctt tacgggcact tatagctcta cgctggctgt cagtcgctat
      241 ggcgttaatt tgggagccag tggtacagac gatttgctgg gtgcggtatt ggtggatgtg
      301 aaaggcttct ctgaacagga tgaagagagt caggatctgc aactcgaagc gcgggtggca
      361 ggcagccgaa ctttgcagct tggtcaaagc gacagtgtgt tgttccctta tcctggattt
      421 cagtctggtt ttgttgaggt taacgacagt agccagggca atcagcaggg gacaacaaac
      481 atcattaacg gtgcagggaa tcgtgaatta atgttgttgc ctggcaagct gcgctatcgc
      541 gaagtgtctg ccagctttaa ctacaactat atcggtcgtt tattactgcc ggcagcggtg
      601 aaaaaattcc cgattgtggg gctgaacagc gccatgttac tggtagctga agatggcgga
      661 tttacacttg aaattaacgg cagcgaaaaa gagctctatc tgctttccgg gcagcaattc
      721 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
      781 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      841 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      901 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      961 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
     1021 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
     1081 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
     1141 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgctag
     1201 gatgcaaggg ggggcaaagg gcttcagacg aatcttaagg attctaatag atcttcatgt
     1261 acagaagatg gtcaacatta ttatatatac gatacaaagt ttcttacgct ctaccttgag
     1321 cagacagaga tgaagaattt gccgattggt ggcgtctgga aggggaaagt taaattacat
     1381 tcgaacagcc cggcccagga ctatttcgca aatattaccc tgaatacgct cgaccccaac
     1441 catattgacg tgttcttccc ggagttcgcc cacgccacgc cgagggtgca gttagacttg
     1501 catccaacag gaagcgttaa cggcagcaac tacgcgcaag atctgaccat gttggacatg
     1561 tgcctgtacg atggttttaa cggtaatgcc atcagttatg aaatcatgct caaagatgaa
     1621 gggcgaccag ctgcagggcg cagagacggt gacttctcta tctatcgtca gggaggaacc
     1681 tctaccgacg agggagaacg cattgattac cgggtcaaaa tgtacaaccc ggaaaccggt
     1741 gggcaaattg atgtgcgcaa taatgaaaat atggtctgga acagcattaa cctgaaaagt
     1801 gtgcgtccgg tggtactgcc cggtattcgc tatgccgtga tgtgtgtgcc gacacccttg
     1861 gctctggcag tcgataaatt cagcgtgatg gataaacagg ccgggtacta catgggcaaa
     1921 ttgtcagtaa tctttacgcc ttccttgcca accatcaatt aaccctgcaa agcggacaaa
     1981 cgcttttttc tatataaacg acgaagccgc ctgataaggc ggcttcgtcg ttataactta
     2041 cgttaaacgt taatgttgcg gtgcgggatc gttatgtgat tcctgcgcta cctcaatcgc
     2101 cggtttgttc tgcaacacgg tccagataac cagcgcacct aacaggtcga acactgccag
     2161 tactgcgaac agcgggctga agccgatggt gtcagccagt gcaccgacaa ccagcgaaaa
     2221 cagcgtactt gccagccatg cggacatccc ggttaaaccg ttcgccgtcg ccacttcgtt
     2281 acgaccgaac acgtcagaag agagcgtaat cagcgcgcca gacagtgcct ggtgagcaaa
     2341 accaccgata cacagcagca taattgcgac atacgggttg gtgaacaggc cgatcatacc
     2401 cgggccaatc atcagcactg cacccagcgt tacgaccatc ttacgggaaa cgatcaggtt
     2461 cacaccaaac caacgctgga acagcggcgg caggtaacca ccgaggatac aaccgaggtc
     2521 agcaaacagc atcggcatcc aggcgaacat cgcgatctct ttcaggttaa agccgtaaac
     2581 tttaaacatg aacagcggga tccacgcgtt aaaagtaccc caggctggtt ctgccaggaa
     2641 acgcggcagc gcgatacccc agaactgacg gttacgcagg atctgaccaa cggacatttt
     2701 cttcgccgtg ctcacctggt gctgggcttc ctgaccatta ataatatagt cgcgttcttc
     2761 atcggtcaga tgcttctggt cgcgcggatg tttatagaaa atcagccatg ccatcgccca
     2821 gataaagctc aatgcaccgg agatgataaa tgccatctgc cagctgtgca ttacgattgc
     2881 ccataccacc agcggcggcg caatcatcgc accaatcgaa gaacctacgt taaagtaacc
     2941 taccgcgatg gaacgctctt tcgccgggaa ccattcggag ctggctttca gacccgccgg
     3001 gatcatcgct gcttccgcgg caccgactgc accacgagca atcgccaggc cacccctgct
     3061 accagccagc gcggttgcac cacagaatac ggcccacagt acagcaaaca ttgcataacc
     3121 gattttcgta cccagcacat ccagtacata gcccgctacc ggttgcatga ccgtataagc
     3181 agcagaatag gctgcgatga tataggaata ctgttgggtg gagatgttta actcttccat
     3241 cagagttggc gcagctgccg ccacagtgtt acgcgtcagg taaccaagca cggtgccaag
     3301 cgtcaccagt gcgatcatat accaacgtaa ccctttaatt ttacgcatgt aaaacctcat
     3361 cgttttgtta tatccgcagg aagcgcggcc atcatcccgc cagaggctga agatgttagt
     3421 tacgaccggg taaccgaaaa aaaaccggca cgccccgaac gttgccatga aagtttcgtg
     3481 ctaattcggc ttccgtaccg gttaacccga ttcatctaac aaatgaatga atcggcaatt
     3541 tgcattccgt cgacttatga tttgcgacgg cagaaagatg acttgtcata caactttaaa
     3601 aggtgagagc catcataaat gtgcgaatat ttgtagggac attacctgac gacagcgagg
     3661 ccagtactgg cgcggcctgc agcgagattt accactttga gagtaatttt tttaactacg
     3721 tttattgatc taactcacga aaatatcttc ggactctgga aattggtgtg ataactttgt
     3781 cagcatcgca ccataagcaa gctagctcac tcgttgagag gaagacgaaa atgactccgt
     3841 ttatgactga agatttcctg ttagataccg aatttgcccg ccgtctgtat cacgactacg
     3901 caaaagacca gccgattttc gattaccatt gccatttgcc gccgcagcag attgcggaag
     3961 actatcgttt taaaaacctg tatgacatct ggctgaaagg cgatcactac aaatggcgcg
     4021 ctatgcgtac caacggtgtg gccgagcgtc tgtgtaccgg tgatgcgtct gaccgtgaaa
     4081 aatttgacgc ctgggcggcg actgttccgc acactatcgg caacccgtta taccactgga
     4141 cgcacctcga actgcgtcgt ccgtttggta tcactggcaa attgctttct ccgtcaactg
     4201 ccgatgaaat ctggaacgaa tgtaacgaac tgctggcgca ggataacttc tccgcgcgcg
     4261 gcatcatgca gcagatgaac gtgaaaatgg tcggcaccac cgatgacccg atcgattctc
     4321 tggagcatca cgcagagatc gccaaagacg gctctttcac catcaaagtg ctgccgagct
     4381 ggcgtccgga caaagccttc aacatcgaac aggcgacctt taacgactac atggcgaagc
     4441 tgggcgaagt ttccgatacc gacattcgcc gctttgctga cctgcaaact gccttgacca
     4501 aacgtctgga tcacttcgcc gctcacggct gtaaagtgtc tgaccatgcg ctggacgtgg
     4561 tgatgtttgc tgaagcgaac gaagcggaac tggacagcat tctggcgcgc cgtctggctg
     4621 gcgaaaccct gagcgagcac gaagtggcac agttcaaaac tgcggtactg gtgttccttg
     4681 gtgccgaata tgcacgtcgc ggctgggtac agcagtacca cattggcgcg ctgcgtaata
     4741 acaacctgcg tcagttcaaa ctgctggggc cggatgtagg ctttgactcc atcaacgacc
     4801 gtccgatggc agaagagttg tctaagctgc tgagcaagca gaacgaagaa aacctgctgc
     4861 cgaaaaccat tctgtactgc ctgaacccgc gcgataacga agtgttgggc accatgatcg
     4921 gtaacttcca gggcgaaggt atgccgggca aaatgcagtt cggttccggc tggtggttta
     4981 acgatcagaa agacggtatg gaacgtcaga tgacccaact ggcgcagctc ggtttgctga
     5041 gccgctttgt cggtatgctg actgacagcc gtagcttcct gtcatacacc cgtcacgaat
     5101 acttccgccg cattctgtgc cagatgatcg gtcgctgggt ggaagcgggc gaagcaccgg
     5161 cggacatcaa cctgctgggc gagatggtga aaaatatttg ctttaacaat gcgcgtgact
     5221 acttcgccat tgaactgaac taaggtctgg ggttgatatg caatacatca agatccatgc
     5281 gctggataac gtcgcggtcg ctttagcgga tttggctgaa ggcacagaag tcagtgtcga
     5341 taaccagact gttacgctgc gccaggatgt tgctcgtgga cataaatttg cgttaacgga
     5401 tatcgcaaaa ggggccaatg tcatcaaata tggcctgccg attggttatg cattggcgga
     5461 tattgcggcg ggggaacacg tccacgccca caatacgcgc acgaatctga gcgatctgga
     5521 tcagtatcgc tatcaacctg attttcagga tctgcctgcg caagcggcag atcgtgaagt
     5581 gcagatctat cgtcgcgcta acggcgatgt cggggtgcgt aacgagctgt ggatcctgcc
     5641 aaccgtgggc tgtgtcaacg gcatcgcgcg gcagatccag aaccgttttc tgaaagagac
     5701 caacaacgct gaaggtaccg acggcgtgtt cctcttcagc cacacctacg gctgctcaca
     5761 gctgggcgac gatcacatta atacccgcac catgctgcaa aacatggtgc gccacccgaa
     5821 cgcaggcgca gtgctggtga ttggtctggg ctgtgaaaac aactaggttg ccgcattccg
     5881 tgaaacgctg ggcgatatcg atcctgaacg cgttcatttc atgatctgcc aacagcagga
     5941 tgatgagatc gaagccggga tcgagcattt gcatcagctg tataacgtga tgcgcaacga
     6001 taaacgcgag ccaggcaaac tcagcgaact gaagtttggt ctggagtgcg gtggttctga
     6061 cggtctttct ggtattactg ctaacccgat gctggggcgt ttctctgact acgtgattgc
     6121 taacggcggt actaccgtac tgaccgaagt gccggagatg tttggcgcag agcagttgct
     6181 gatggaccat tgccgcgacg aagcaacgtt tgaaaaactg gtcaccatgg tcaacgactt
     6241 taaacagtac tttattgccc atgatcagcc gatctacgaa aacccatcac cggggaacaa
     6301 agcgggcggt atcaccacgc tggaagacaa atcacttggc tgtacccaga aagcgggttc
     6361 cagtgtcgtg gttgacgtgc tgcgttacgg cgagcgtctg aaaacgccag ggctgaactt
     6421 gttaagtgcg ccgggtaacg atgccgtagc gaccagcgcc ctggcgggtg cgggctgcca
     6481 tatggtgctg ttcagtactg gtcgcggcac gccatacggt ggatttgtgc cgacggtgaa
     6541 aatcgccacc aacagtgaac tggcggcgaa gaaaaaacac tggctcgact ttgacgcggg
     6601 tcagctgatc cacggtaaag cgatgccgca gttgctggaa gaatttatcg acaccatcgt
     6661 tgagtttgcc aacggtaaac aaacctgcaa cgagcgtaac gacttccgcg aactggcgat
     6721 cttcaaaagc ggcgtaacgc tataaagtcg aaatgagttg ttaataaaaa acggcgtttc
     6781 ataatgtgaa gcgccgtttg cttttccata cctgataagg atttatcatg accgcgtatt
     6841 ggctggccca gggcgtgggt ttcatcgcct ttctgattgg tatcacaaca tttttcaatc
     6901 gtgacgaccg tcgcttcaaa aagcagcttt cggtctatag cgccgttatt ggcgtacatt
     6961 tttttcttct gggcacctat cccgctggtg ccagtgccat ccttaatgcc attcgtacat
     7021 tgattatcct tacgcacgcg cagcttatgg gtaatggcga tttttattgt gctgactggc
     7081 ggaattggcc tcgcgaagtt ccatcatcct gtcgaactat tgccggttat cggtacgatt
     7141 gtcagtacca gggcgctgtt ccgctgtaaa gggctcacca tgcgctgcgt gatgtggttt
     7201 tcaacgtgtt gctgggtgat tcacaacttc tgggcggggt cgataggcgg cacaatgatt
     7261 gagggtagtt ttctgcttat gaatggcttg aatatcattc gtttctggcg gatgcagaaa
     7321 aggggaattg atccgtttaa agtagagaaa acccctcccg ccgtagacga aaggggttaa
     7381 acaattaatt acgcagggcg ctatttgcca gacgatcgtc ttccgcctgg caagctgccg
     7441 cagtgaacag cacgtcagtt gaagagttca gcgcggtttc gcaagagtcc tgcaatacgc
     7501 cgatgataaa gccgacggca accacctgca tggcgatatc gttcgaaata ccgaacatat
     7561 tacaggccag cgggatcagc agcagagaac cccccgccac gccggatgcg ccacaggcac
     7621 acagagaagc caccacgctc aacagcagcg ccgtgggcag atcgaccggg atacccagcg
     7681 tattaaccgc agccagcgtc aacacggtaa tggtgattgc tgcgcccgcc atattgatgg
     7741 tggcacccag cggaatagaa acggaatagg tatcgcgatc cagattcagc ttttcacaca
     7801 gtgccatatt caccggaatg ttcgccgcag agctgcgggt gaagaaggca tacacgccgc
     7861 tttcgcgcag gcacagcagc accagcggga acgggttacg acgaattttc caccacacca
     7921 gcaatgggtt aaccaccagc gccaccagta acatacagcc aaccagcacg accagcagtt
     7981 gcgcgtagcc ccacagtgtg gagaaaccgg tggttgccag ggtagaagaa accagaccaa
     8041 aaataccaat cggtgcgaag cgaatgacca gtttcaccat aaaggtgacg gcattcgaca
     8101 gatcgttgac caggtttttg gtggtctcgt taccgtgacg cagtgcgaaa ccgaggccaa
     8161 ttgcccacac caggatcccg atgtagttac ctttcagcag cgcgtcgatg gggttggaaa
     8221 ccatgctcat taccagcccg cgcatcactt ctacaatgcc tgacggtggc gaaatatcac
     8281 ccgcgctact ggataagtgc agggtagaag ggaaggcgaa gctgaaaacg actgcggcca
     8341 gagcagcaga gaaggtaccc agcagataga ggaacaaaat agggcggata ttggttttct
     8401 gcccgtgctg gtggttagca atagatgcca tcaccagcat caacaccagg atgggggcaa
     8461 cggctttcag tgcgccgacg aacaaagtac ctaacagacc aacagcttcc gccgcgggtt
     8521 ttgagatcca tgccagaaga atccccagaa caaggccgac caggatttgt tttaccaggc
     8581 tgccatgagc cagacgccgg aatagccccg gtgaacgttg cgtagtcatt tttcgatcct
     8641 ttcattgtgt tgtcgcacat ccctggtgcg ttctgtcgac gcatctttca ggatgtaaca
     8701 aagtgtttgc aaggtcgagt ataaggaaag ttacagcttc gggaagcgaa aaatgctgga
     8761 ttttaaagag aggtcatatt ttgcaactta attgttacat ttgtttgaca taaacagagg
     8821 gaaggactgg ctactaaggc tgattagata acatatgggc aaaactattt ggaatatgag
     8881 aacggttgcg ctcctttaat gtgctatgcc atataaagtc actggcgcag ggagcgcgca
     8941 gggggcagcc aatcgccgcc gccccctgca cccccaggct ctggcgaaca aaatcgccgc
     9001 tgcgcgattc cctcagctta tcccttgcgg ctaccgggtc gggcgcaagg gaacgtccct
     9061 gtaagatgcg ccctcgccgc gcatccatgc gcgtcgcccc ggcctccagg gaacgcttcg
     9121 gcgattttga cgccaccaac acccgtgcgg tctttttgta aagagctaca agccaattac
     9181 ataattaata gctcaccttt gtctggaatg agttatctct aggaatggct taatatacag
     9241 cgaatcattc tccccgctgc ttatcatgcc gataattcac cctggcgttg ataataaacg
     9301 tcatcaccag aatgccaaac accacgccca gcgagacggc gattggaata tggtagaagt
     9361 cgacaatcag catcttgata ccgataaaca ccaggatcac cgccaggcca tatttgagca
     9421 tcgagaaacg ctctgctacg cccgccagca ggaaatacat cgcacgcagg ccgaggatcg
     9481 caaacaggtt tgaggtcagc acaatgaacg ggtcagtggt cacggcgaag atagccggaa
     9541 tgctatccac ggcgaaaatc acgtcgctca attccaccag aatcagtacc agcatcagcg
     9601 gtgtggcgta cagcaatcca ttcttacgca caaagaaatg ctcgttgtcg atggtgtcgg
     9661 tcatgcgcaa atgaccgcgt agccagcgca ccagcggctt gtcgccaatg cctgattcat
     9721 cttcatgggc gagcgccatc ttcacgccgg taaacagcag gaaggcaccg aagatataca
     9781 ggatccagtc gaactgcgaa attagccagc tgccagtgaa gatcatgatg gtacgcagaa
     9841 caatcgcccc gagcacgcca tacaccagca cgcggcgttg taatgccgcc ggaacagaga
     9901 aatagctgaa caacatcagc cagacaaaga cgttatcgac cgccagcgat ttctcaatca
     9961 gataacccgt gagaaaggcc agtgcctgtg gatcggcaac ggcgcgacct tcggtttgca
    10021 ccagatacca ccagaaagcg gcgttaaaca gtaacgacag cgtcacccaa accagcgacc
    10081 aggccgcagc ctgtttcatg gtcatggcat gtgccccacg acgcccctgc aacaacaggt
    10141 cgatagccag cataatggcg acaacaacag cgaatccgcc ccatagcaac ggcgtgccga
    10201 cagtattcat agaagttcct tacacataaa aaaaacggcc aacgtcggaa gacgtcagcc
    10261 gctgcttttt atgcatagac ctcgccttcc ggcaaggtct cacttacaac aaaaaaggaa
    10321 tacgtctgcg tattcctttc ggggtgcccg gtgaccggat gtggtttttc acacatcgta
    10381 atgacgatcg accggcaatg aagttactcc cctttgcagg taacaaagta tgacagacca
    10441 ttcagccagt caatggtctg ttacatacct tttacactgt tttactttgg caattatagt
    10501 tttacgctat ctgccggaaa aatcacccca gtctggcggc ggatctcagt cagcagtttg
    10561 gcggtgatgc gactgaccgc cagccctgga tgatccacca gatgctcatc caccagggta
    10621 gcaaacagct ctgcttcgta gagcatggta ttaatatgct gcggctgggt gagatcctgc
    10681 atctggctgc cacgcggcac gaagcacagt ttctggcatt cagacagttt ttcaatcacc
    10741 agcgatcccg cttcgccctg aatctcgctt tccaggacag aatcactgac ctttgagtgc
    10801 agcaacgtaa cgctgaaatc accgtaatcc atcaccacca cgccgtgggc atctacgccg
    10861 cttgccaaca aactggcggt tgcctgcacg cttttcggtt caccgaataa tgccaccgcc
    10921 gacgccaggc agtaaaagcc gatatccata attgaaccgt tagagaatgc cggattaaag
    10981 gtgttgggat tctcaccatc caggtaacgt tgataccgcg aggaatactg gcaatagttg
    11041 aaaaagactt tacgcaattt gccgactttc ggcagcgcct ggcgcagcaa atgaaagttc
    11101 ggcaggctgg cggttttaaa tgcctcaaac agcaccacct gattttcccg cgcacaggca
    11161 atggcggcat ccacttccgc cagattcgac gccagtggtt tctcgcaaat cacatgaatt
    11221 ttatggctaa ggaaaagttg tgtctgggaa aagtgcaggg cattcgggct ggcaatatac
    11281 accgcgtcaa tggcatcgct ttccgccatc gcttccagcg aggtaaacag atgctcgaca
    11341 gaaaaatcat tggcgaagtg ctgggcctgt tcaaggctgc gggaatatac ggcggttaac
    11401 ttgtatttac cgctctcatg ggcggcctcg acgaactggc gagtgatcca gttcgtacca
    11461 atcacagcga aacgtatcat aacgcgtgga tactccataa agggattctg tcgtcaatgt
    11521 agcacgcctt tttcatcttc gacgtgcgca gatacgcatt attcttttgc cggacagcca
    11581 tgctcactaa acggcccaat catgaccgat ggcccgagat atttcggctg gctatggagg
    11641 attttggcgt caatcacggc gctgacacga gcgagtttct ctcgcagttg agtataaaaa
    11701 ccgtgcttca tattgaggtc aggcgcgtta aaaccgatag cgtcgatgct gtactgtttt
    11761 gccagccaga tggcgcgttg gttatgaaat tcttgcgaga taatggtgat atggttttca
    11821 ccaaaaacct ttttggcacg cactaccgaa tccagcgttg agaatccggc atagtcgcag
    11881 aagatcactt tcgccggtac gcctttagcg atcaaagcct tctgcatacc tgatgcttca
    11941 tcgtaatttt tacgtccgtt atcgccactt accagtagcc atttcacttt tccggcgtgg
    12001 tacaacgctg ctgcggtatc aatacgtcgg gtaaagtagc gattacccgg cctggccccc
    12061 agcaataagc ccacgttacg cgccggaact gcgttgacat cgctccaggt cagctgcttg
    12121 ctggcgttga ccattactcg atcggcgata aaaatggtcg ctcctgccac aagtaacagt
    12181 aagcaggcaa tctttagagt ccggcgagaa aaacaaatac ggagaagaag gcggggctgc
    12241 atggtcgtta tccttaacga aaggggggag gtcgatttta ggcgctaaag aaagaaaaga
    12301 taacgcctga catcattttc agattttgtc ctgcccaagc gacaactgcg ttagccacag
    12361 ccgggtgtcg aactccagct ggtggtactg cggctccata tggcagcaca actggtaaaa
    12421 cgctttgtta tgctctttct ccttcaggtg cgccagttcg tgcaccacga tcatacgtaa
    12481 aaacggttcc ggcgcgttgc gaaacacagt agcgacgcgg atctctgctt ttgctttcag
    12541 cttgccgccc tgcacacgag aaacagcggt atgtaacccg agcgcgtttt ttagcacatg
    12601 gatcttattg tcatacatca ctttattgat cggcggggca ttgcgcagaa actgattttt
    12661 tagatcctga gtatattgcc agagggcttt atcggtggcg tagtcgtgtg ttcccggata
    12721 gcgttttgcc agcacatcgc ccagacgctg ttcgttaatc agcgttcgca cctgggaaag
    12781 tagctgctcg ggataaccct gaagataagt aagattgctc ataaccgccc acgaaaaaga
    12841 gaaaaagggt atactcacgc acccttttca ggggcaacgt cgaaatttta tcattcagga
    12901 gggccgatga gccacttaga caacggtttc cgttcactga cactacaacg ttttccggcg
    12961 acggatgacg ttaacccgct acagtcgtgg gaagcggcgg atgaatattt gctgcaacag
    13021 ttggacgaca cagaaatccg cggcccggtg ttgatcctga atgatgcctt tggtgcgtta
    13081 agctgcgcgc tggcggaaca taagccgtac agcattggcg actcatacat cagtgaactg
    13141 gcgacgcgcg agaatttacg cctcaacggg attgatgagt cgagcgtgaa gtttctcgac
    13201 agcaccgccg actacccgca acagccgggt gtggtgctga tcaaagtgcc gaaaacactg
    13261 gcattgctgg aacaacaact gcgtgcgctg cgcaaagtgg tcacgtcgga tacacgtatt
    13321 attgccggtg ccaaagcccg tgacattcac acttccacgc tggaactgtt cgaaaaagtg
    13381 ctcggcccga ccaccaccac gctggcatgg aaaaaagcgc gcctgattaa ttgcacgttc
    13441 aatgaaccgc cgctggccga tgcgccgcag accgttagct ggaagctgga aggtactgac
    13501 tggactatcc ataaccatgc gaatgtcttc tcccgcaccg ggcttgatat cggcgcgcgc
    13561 ttctttatgc aacatctgcc agagaatctc gaaggggaga ttgtcgatct cggttgcggt
    13621 aatggcgtta ttggtctgac gctgcttgat aaaaatccgc aggcgaaagt ggtgtttgtc
    13681 gatgaatcgc cgatggcggt tgcttccagc cgtttgaacg ttgaaaccaa catgccagag
    13741 gcgttggatc gcagcgagtt tatgatcaac aacgcgctct ccggcgtgga gcctttccgc
    13801 tttaatgctg tgctctgcaa cccgccgttt caccaacaac atgcgctgac cgataacgtc
    13861 gcctgggaga tgttccacca tgcccgccgc tgcctgaaaa tcaacggcga gctgtatatt
    13921 gttgccaacc gtcacctgga ttacttccat aaactgaaga agattttcgg caactgcacc
    13981 accatcgcca cgaataataa atttgtggtg ctgaaagcag tgaagctggg gcgtcgtcgg
    14041 taagattggg agttacctgc cggatgcggc gttaacgcct tatccggcct acgttcagca
    14101 cgttactccc aggccggata agacgcggca agcgtcgcat ccggcaatgt ctgcccagtt
    14161 ctggaatcgc gcttccataa aacaaaaaat ccctctcacc atcctctaca ttctcttgtt
    14221 tagcgttttt ctacgtttat tcttccgtca cacagataaa ttcatacgtt gccaatctgt
    14281 caacggatgt tatcatattg ccaatttgtc aacggacgtg atgaagaatg cacctgataa
    14341 ctcaaaaagc attgaaagat gctgcggaaa aatacccgca acataaaacg gagttggtgg
    14401 ctctggggaa catgattgct aagggatatt tcaaaaaacc tgagtcatta aaagcagtat
    14461 tcccatctct ggataacttc aaatatctgg ataagcatta tgttttcaat gttgggggca
    14521 atgaattacg tgttgtagca atggtctttt ttgaatcgca aaagtgctac atacgtgaag
    14581 ttatgacgca taaagaatac gatttcttta ccgctgttca tcgtactaag gggaaaaaat
    14641 gattgcgatt gccgacatct tgcaagcagg agaaaagcta actgcggtgg taccttttct
    14701 ggcgggtatt cagaacgagg aacaatacac ccaggcgctg gaactggtag atcatctgct
    14761 gctcaacgat cctgaaaacc ccttgctgga tctggtgtgt gccaaaataa ccgcgtggga
    14821 agaatcagcg cccgaatttg cggaatttaa tgccatggct caagccatgc ctggcggtat
    14881 agccgtgatt cgtaccctta tggatcaata tggtttaacc cttgccgatc tgccggaaat
    14941 tggcagtaaa tctatggtgt cacgcgtttt gagcgggaag aggaaattaa cgctggaaca
    15001 cgctaaaaaa ttggcaacgc gattcggcat ttctcccgcc ttgtttattg attaacgcga
    15061 cgtgccggat gcgttgcatc cggcgcttca aataacgatt taaatctcca gcgccagccg
    15121 tgttccctgg gcaattgccc gtcgtgcgtt cagctccata gccacatcgc agccgccaat
    15181 taaatgcaca gttttcccgc tatcaatcag cggttgcgcc agcgcgcggt ttggctcttg
    15241 ccctgcgcag atcaccacat tgtccacagc taatacctgc gtttcgccgt tgatcaccac
    15301 atgcagcccg tcatcgtcaa tcttctgata acttacgcct gggatcattt tcacaccccg
    15361 cgagagcagg gtggtgcgat ggatccagcc ggtggttttg cctaacccct gtcccggttt
    15421 gctggctttg cgctggagca tcacaatttg ccgtgggcta cgcgggatct gcattccctg
    15481 cgggcttaag ccaccagcct gttgtaggct gctgtcgatc ccccactcat tacagaacct
    15541 ggcgatattc tggctggtgg attcgcccgg ctgacttaaa tacatcgccg tatcaaaacc
    15601 aatcccgcca caaccgatga tggcaacctt gttgcctacc ggcgctttgt cgcgcagtac
    15661 atcgagataa ctcaatacct tcggatgatc gatcccgtcg ataggcggaa cgcgcggcac
    15721 gatcccactg gcgaggatcg tttcatcgaa cgcctgtaac tgatccgccg tcacggtgtg
    15781 attgagtttc agcgtcacgc ccgtcacttc gatcatccgg tggtaatagc gcagcgtttc
    15841 gtaaaactcc tctttgccgg ggatctgttt ggcgatatta aactgcccgc cgctctcgct
    15901 gtgggcatca aacaatgtta cctgatgccc acgcgccgcc gcgttaatgg caaacgccag
    15961 cccagcaggt cccgcaccga ccaccgccag attttttttc tgcacggcag gaaggattgg
    16021 cattttggtt tcgtggcagg cgcgaggatt caccaggcac gaggtgactt tgccaacgaa
    16081 gatctgatcg aggcaggcct gattgcagcc aatgcaggtg ttgatctcat cggctcgccc
    16141 cgattgcgct tttgacagca gttccgcatc agcaagaaac ggtcgtgcca tcgataccat
    16201 atcggcatcg ccgcgcgaga gaatatcgtc ggcaacctgc ggatcgttaa tccggttggt
    16261 ggttaccagc ggcagcgaga cgtggccttt cagtttgcgc gtgacccagc taaatgcgcc
    16321 gcgcggcacg ggcgtggcaa tggtcggaat acgtgcttca tgccagccaa tgccggtgtt
    16381 gataatggtc gcgcccgccg cttcaatggc ctgcgccagc tctaccgttt cggcaaaagt
    16441 cccgccgtct tcgaccaggt cgagcatcga cagtcggtag ataataatga agtcgttgcc
    16501 gacgcgttcg cgcaccgcac gcactacttc tacggcaaat cgcatccggt tgcggtaatc
    16561 gccgccccac tggtcactac gctgattggt gtgcagcgtc agaaattcgt tgatcaaata
    16621 cccttcggac cccattacct ctacaccgtc gtatcctgcc tcccgtgcca gttgcgcgca
    16681 gtgggcgaaa tcgtcgatca gttgcaggat ctcttcatgg gtgagttcgt gaggaacgaa
    16741 acggttgatg ggggcctgca atgcggaggg agcgaccaga tgcggttggt agctgtagcg
    16801 cccggtatgc aaaatttgca gggctatttt gccgccttcc tgatgtaccg cttcggtaat
    16861 ggtgcgatgg tgtgggatct ggctggcgtc gttgagcatt gcgccacctt ccatgccaac
    16921 gcctgttaaa tctggtgcaa tgccgccgct gacaatcagc gccacgccgt gacgggcgcg
    16981 ttcggcataa aacgctgcca gccgctcggc accgtccggg tattcctcca gcccggtgtg
    17041 cattgagccc atcaacacgc ggttttttaa cgtggtaaaa cctaaatcca gcggggcgaa
    17101 cagcgacggg tagctcataa aattgtccag tatgtaaaat aattgttatg tggtcggatg
    17161 agttctaatt tagccgtcgc cggagaaaag ggaaaagggg agtgcggggt ttgtgatggg
    17221 attcaaaaag aatacgcccg gtggtaacgc cggatgcgac gcttgccgtg ttttatccgg
    17281 cctgggggat tgcacatgta gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg
    17341 gtgcagatgc cggatgcgac gcttgtcgcg tcttatccga cctacgggaa cgcacatgta
    17401 gggcggataa ggcgttcacg ccgcatccgc cagtggcgcg gtgcagttgc cggatgcaac
    17461 gcttgccgcg ttttatccgg ccaggaggat tgcacatgta gggcggataa ggcgtttacg
    17521 ccgcatccgc cagcagttgc aaattattgc ttacggaaaa aatcgttata caacatatac
    17581 aaatgcgcgg cactccagga gaaatttggt gcgccttgct gcgcgccagt cagcgggttg
    17641 taattctcct gaattgggcc atcggcggtt aatcctttgg cgtgccggaa gaacgtatcc
    17701 gccagcttca gggcatcatc acgataaccg taacgctcca tccctttcag agcaaaccag
    17761 aactgatcca cccatacgcg cccgcgccag tagatatcag cgccaaaagc cggattggtt
    17821 aacgccgccg ttcccagcgg gacaaaggtg ttgaactctt taggatcgag catcaccttc
    17881 accaccgcgt cggcattggc ctgcgttgcc gcaccgttaa acagcggcga ccagccttcc
    17941 ggccctttac cgcgctcaac aatcggtttg cccgcgcagc cgttcgccag tggtttatct
    18001 tcaatacgta cgtcatagta gaactgggta gtcgggtcga acatacaggt gttgatgtag
    18061 tccgcgagct gctgtgccaa ctggcgatag cgtttggcct cttctggctt accgaggatg
    18121 gttgccatct ccgccagata atggttatcg ctgtacatat agctggcctg atccaccgac
    18181 tcctgcaata gcgagtagcc cagcaacgtt ccgtcctgac tgcggttttc ggcgaatttc
    18241 accgtccagt cgctacgttt gccaccatta gcgacatatt tatccaactg ttctttgtcg
    18301 ataaaaccaa agacggcggc atcatcacgc cccgattccc acgacgcagc gacctgtgcc
    18361 ggaatttcca gactgtcgta ctggcctttc tccaccacgc gggcgtagtt gttcagccca
    18421 gactgcgtct cttctttgtt gcctttcttc accgcaaaca gcatctcgcc gctctcagtg
    18481 ttgtgggctt tgtcgcgggt cgcgccatat tccggcacgc cgttgccgtt gtgatcgcgg
    18541 ttacgtaacc accagtcgtg ataggcgacc agtttcgggt acatctctgc caaccaggct
    18601 ttatcctggg tgacgttgta cacttctatc accgaccagg cggcaaggct gggtttggta
    18661 ttacgttcgt tccagttgcc gccatcgcca ccacgctcgg ggctaaggtt ccacgctatc
    18721 aggtcgggga caaagcccac atcctgcgga cgcacgcggt cgccaggctg gatctgccag
    18781 gagaagaccg cgcggatatt ctctttggcg atgtccggat tgaaatgcgc catcgcaaac
    18841 gcctgcttct aggtatccca cggccaggtc tgattgccgg agaaccagcg cccggtcacc
    18901 gacggtgtaa cggtgttaaa tttcaccgca ccgcccggtg agcgccagtt accgttgagc
    18961 gtttcgatcg ctttcaccgc gacgcgcgtc tgttccggcg tcgcatccgg attggttaac
    19021 cctttcttca ggtattcttc ccagcgttgc tgcgaggcgg tgagataaaa cgccggacgc
    19081 gccagaatat cgcggatctg catttgctct ttgctaactt cctgagcggt cagcagatgg
    19141 gaataggtgg tgtagagcgt ggtcgaaccg ttgatatgcg ccttactggt aaagcgatta
    19201 ccgttgattt cagtctgcac cggcagggat ttatgcacct gatattccga ttcgccggag
    19261 gtcagcagat cccaggtggc gcgcactttg ccaaaggtga ctttcaggcc atcacgggtg
    19321 gcgctgattt tgcgctgata gtcagggtat tcgccagcaa tggttttatc ggaaagcggt
    19381 ttcccttctt tcgcttccag tttttccagc agttcgccgt cccacaccag atccagcggt
    19441 ttattgctgg tgattttggt ttccagtagt gacgtgcgcg gcgtggcgaa gcgcagagtc
    19501 atttcgactt gcacatcttt tgctgtcagt ttttgcacca gcgcaccggg aatactgtat
    19561 gcctccagcg taaagtcgac tttcttgccg tcctgccaga cggtcaggcg gtcgaaattg
    19621 ctggccataa agttgatgta ctcttccgtc agcagcgcaa cgcccggaaa gccgcccatg
    19681 gtgttagggc cgtctggcaa cagatgacca tgccaggctc cgagatcgaa aaacggatta
    19741 aaacgctggt gatcgtcgta atcgtaatcc ttcatgtact gcggcgcgcc agtacggtta
    19801 atcacgtttt tataattgtc ggcgttagcg gcatgggcgg aaaaacttat cagcagagcg
    19861 caggttactg gcgttaaaat agtttttatt ttcatgaaat tacagtcctt attaccagta
    19921 gaaatattgc atcaggaaga tttggtcgct gggatcgtga gaggcatttt tcatgtagaa
    19981 gcggctatca aaagccgtgg cgaaacgtcc gccgccgtat tcgtaccaga taccaaactg
    20041 catgaaagag gtggtttcat cgtcagcgtg gtcagggcga tgtttggcgt aggtgtaagc
    20101 ggtggagaga taaacgccct ttaacgcttc atacatggcg ctcaccatca tcccactttc
    20161 acttcccggt acgtccagcc cgtcggcgcg tccggtatgg tgccaggcgc gagcggcaaa
    20221 gttaggagtt agcaggcccg tgagatagag ctgtcctgtg ccgtcggtga tttccagacc
    20281 gttcatccag gtgatgcctt cggcaaggtc atactggatg taaccgttca tcattgccgg
    20341 ataggtgtat ttgtcgtcat agcgatcgta tttgccaaaa tgtagccagg ctttgctttc
    20401 atcatgatgt ccggcaggag tcgcggtgac gctataacga aagttgccgc ttaagttctg
    20461 taccttcagc gcagtcataa tgtcgcgggt attgggaatg acgtagccca gatcgggggt
    20521 gaaatcgccc caccattgca ggtcatccag cgaggaatcc tgacgcagac tgagcatgat
    20581 ttcggtgcca tcattggtac gataaccgcc atagaaacgg ttaattccgc cctcgaaacc
    20641 accccagcta tggtctggca c
//
LOCUS       DAJVUY010000067        20527 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.067, whole genome shotgun sequence.
ACCESSION   DAJVUY010000067 DAJVUY010000000
VERSION     DAJVUY010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20527
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.067"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..405)
                     /gene="nudI"
                     /locus_tag="OQQ72_002179"
     CDS             complement(<1..405)
                     /gene="nudI"
                     /locus_tag="OQQ72_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HCS2011899.1"
                     /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEYGE
                     RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN
                     REVKINEEFQDYTWVKPEDLVHYDLNVATRKTL"
     gene            684..1226
                     /locus_tag="OQQ72_002180"
     CDS             684..1226
                     /locus_tag="OQQ72_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011900.1"
                     /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST
                     GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK
                     DGNRDNAVADGPYVGVNASF"
     gene            1326..2528
                     /locus_tag="OQQ72_002181"
                     /pseudo
     CDS             1326..2528
                     /locus_tag="OQQ72_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
     gene            2748..3530
                     /locus_tag="OQQ72_002182"
     CDS             2748..3530
                     /locus_tag="OQQ72_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS2011901.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL
                     LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH
                     LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLSWQPAAVQQSIIEGL
                     VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVRCVAAPVFNANNELTAAIS
                     VVGTRLQINEEYRDYLAGKSIACARDISRLLGWKSPFDLQAS"
     gene            3545..4750
                     /gene="rhmD"
                     /locus_tag="OQQ72_002183"
     CDS             3545..4750
                     /gene="rhmD"
                     /locus_tag="OQQ72_002183"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HCS2011902.1"
                     /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLNATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW
                     LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYEGYRELKRNAPVGMMVTSGE
                     HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD
                     CNLKRPYSH"
     gene            4807..6096
                     /locus_tag="OQQ72_002184"
     CDS             4807..6096
                     /locus_tag="OQQ72_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2011903.1"
                     /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD
                     TEAKFLIVRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ
                     LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA
                     LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH"
     gene            6114..6917
                     /gene="yfaU"
                     /locus_tag="OQQ72_002185"
     CDS             6114..6917
                     /gene="yfaU"
                     /locus_tag="OQQ72_002185"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HCS2011904.1"
                     /translation="MNALLTNPFKERLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLL
                     IDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTA
                     DQARQVSSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN
                     LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV
                     APDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY"
     gene            complement(6958..7860)
                     /locus_tag="OQQ72_002186"
     CDS             complement(6958..7860)
                     /locus_tag="OQQ72_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HCS2011905.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(8053..9243)
                     /gene="glpC"
                     /locus_tag="OQQ72_002187"
     CDS             complement(8053..9243)
                     /gene="glpC"
                     /locus_tag="OQQ72_002187"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HCS2011906.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(9240..10499)
                     /gene="glpB"
                     /locus_tag="OQQ72_002188"
     CDS             complement(9240..10499)
                     /gene="glpB"
                     /locus_tag="OQQ72_002188"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HCS2011907.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLH
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLLCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(10489..12117)
                     /gene="glpA"
                     /locus_tag="OQQ72_002189"
     CDS             complement(10489..12117)
                     /gene="glpA"
                     /locus_tag="OQQ72_002189"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HCS2011908.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            12390..13748
                     /gene="glpT"
                     /locus_tag="OQQ72_002190"
     CDS             12390..13748
                     /gene="glpT"
                     /locus_tag="OQQ72_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HCS2011909.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            13753..14829
                     /gene="glpQ"
                     /locus_tag="OQQ72_002191"
     CDS             13753..14829
                     /gene="glpQ"
                     /locus_tag="OQQ72_002191"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS2011910.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(14871..15113)
                     /locus_tag="OQQ72_002192"
                     /pseudo
     CDS             complement(14871..15113)
                     /locus_tag="OQQ72_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            15292..15942
                     /gene="inaA"
                     /locus_tag="OQQ72_002193"
                     /pseudo
     CDS             15292..15942
                     /gene="inaA"
                     /locus_tag="OQQ72_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(15996..16250)
                     /gene="yfaE"
                     /locus_tag="OQQ72_002194"
     CDS             complement(15996..16250)
                     /gene="yfaE"
                     /locus_tag="OQQ72_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HCS2011911.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(16250..17380)
                     /gene="nrdB"
                     /locus_tag="OQQ72_002195"
     CDS             complement(16250..17380)
                     /gene="nrdB"
                     /locus_tag="OQQ72_002195"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HCS2011912.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(17527..19812)
                     /gene="nrdA"
                     /locus_tag="OQQ72_002196"
     CDS             complement(17527..19812)
                     /gene="nrdA"
                     /locus_tag="OQQ72_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCS2011913.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         4820 a         4974 c         5513 g         5220 t
ORIGIN      
        1 taacgttttt cgggtggcaa cattcaaatc ataatgcacc agatcttcag gttttaccca
       61 cgtgtagtcc tgaaactctt cgtttatttt cacttctcgg ttggcagaaa cgcagtcaaa
      121 aatcaggtaa atcatataaa tctcttcctt gcgaccatct gcatacgtct tggtgcgaat
      181 atcatcgctg aaggtccacg gcgtgatttc tgtcaaaagc agctgttctc ccagttcttc
      241 gcgaatttcg cggcgtagtg cctcttcaat tcgttcgcca tactccacgc cgccacccga
      301 aagcgcccat tgaccgggga aaacgccgcg atcgtcggcc attttgcaca gcagataagc
      361 accatcattt tgaatcaaag ggcatacaat agtccgttgt cgcacagggg tattccttat
      421 aaataaaaag aaaccatgag aatacggtaa ctcagaaata tgtgaaagtg acagtaatct
      481 cttttgcgat gataactgca cttattatta tttttgtgtg tatcggtaaa gtgtgtttat
      541 tttttcggcg tttaattatt taagaagtat ttagttacaa taagtgacta gatccctttt
      601 ttcgctcatt gaatcctctg tgccaggcag tacaatcccg cagctttggg aattttgatt
      661 aattgcttgt gggaaagggg ataatgaaaa aaattgcgct agcaggtctg gccggaatgc
      721 tgttggtttc tgcatcggtc aatgcaatga gcatcagcgg tcaggcgggt aaagaataca
      781 ccaatattgg tgtcggtttt gggactgaat cgacgggcct ggcgttaagc ggtaactgga
      841 cacataacga cgacgacggt gacgtcgctg gcgtggggct ggggttgaat ctgcctctag
      901 ggccgttaat ggcgaccgtt ggcggaaaag gcgtttacac caacccgaat tacggcgatg
      961 aaggttatgc cgcagcggta ggaggtggtt tgcagtggaa aattggcaac agcttccgtt
     1021 tgtttggcga gtattactac tctccggatt cactctccag cggtattcaa agttatgagg
     1081 aagcgaatgc tggcgcgcgt tacaccatta tgcgtccagt cagtattgag gcgggttatc
     1141 gctacctgaa tttgtcgggt aaagatggta accgcgacaa cgccgtggct gacggcccgt
     1201 atgttggggt taacgccagt ttctgatccc ttccggcgcg gcattctgtc gcgccattca
     1261 gtttcttact acgccttatc tccctttgcg ttatagtgat tcgataacaa aagcaggaga
     1321 taaccatgtt aaaagtggaa atgttatcca ccggggatga agtgttacac gggcaaatcg
     1381 ttgacactaa cgctgcctgg ctggccgatt ttttctttca tcaggggctg ccattatctc
     1441 gcctcaatac ggtgggggat aaccttgatg acttagtcac cattcttcgc gaacgtagtc
     1501 agcacgccga tgtgctgatc gttaacggcg ggctgggacc gaccagcgat gatttaagcg
     1561 cactcgccgc tgcgacagca aaaggtgaag gcctggtgct gcatgaagcc tggctcaaag
     1621 agatggaacg ctatttccac gaacgtggac gagtaatggc accgagcaac cgtaaacaag
     1681 cggagctgcc tgccagtgct gaatttatca ataacccggt aggcaccgcc tgtggttttg
     1741 ccgtgcagct taatcgttgc ctgatgttct ttactcccgg cgtaccgtca gaatttaagg
     1801 tgatggtcga gcacgaaatc ctgccgcgcc tgcgcgagcg tttttcttta ccacagccgc
     1861 cggtttgtct gcgtttaact acctttggtc gttcggaaag cgatctggca caaagcctgg
     1921 acactctaca actgccgccg ggcgtaacaa tgggctatcg ctcttcaatg ccgattatcg
     1981 aactgaaact caccggaccg gcaagcgagc aacaggcgat ggaaaaactg tggctggacg
     2041 ttaaacgtgt tgccggacag agcgtgattt tcgaaggcac cgaaggactg cccgtgcaga
     2101 tcagtcgcga attgcaaaac cgccagttca gcctgacgtt gagcgagtaa ttcaccggtg
     2161 gtttattggc tttgcaactt tctcgcgcag gtgctccatt gctggcgtgt gaagtggttc
     2221 cttcacagga agaaaacctg gcgcaaactg cgcactggat tacagaacgg cgggccaacc
     2281 attttgccgg gctggcactg gctgtttcgg gtttcgagaa cgaacatctc aactttgcgc
     2341 tagccacacc agacggcact ttcgctctgc gtgtgcgttt cagcactacg cgctacagcc
     2401 tggctatccg tcaggaagtg tgcgcaatga tggcactgaa tatgctgcgc cgttggttaa
     2461 acggccagga tatcgccagt gagcatggct ggattgaggt tattgagtcc atgaccttat
     2521 ctgtctgatt ccgccactct gtgccggttt actgcaccgg cacattcccc ctccggcaaa
     2581 acttgtccaa cctgttgcac tcaataagaa aaaatccgtg cactgattca caaatttgtg
     2641 cgtaatttct ccagtccgct ggacgaggag cgggatttga tgcgcttcac aattttactc
     2701 cccctgagca acgagactga ttccagtatc taagactgga gtccagtatg ttggaatcaa
     2761 gcaaagttcc cgccctgaca cgggctattg atattctcaa tttgattgcc cgcattggcc
     2821 cctgtagtgc tgcgacgatc attgacacat tgggaatccc taaaagcacg gcctatttgc
     2881 tgcttaatga actcaggcgt cagcgttttc ttagccttga tcaccaggaa aatttttgtt
     2941 tgtggaccag gctggtggag ctttctggtc atgcgttaag caagatggat ctccgggaac
     3001 tggctcgacc gcgtttgacg caactgatgg ataccaccgg gctgttatgt catctgggga
     3061 ttattgataa cggcagcgct tattacattt taaaagtgga gtcatcagcc actatcagcg
     3121 tgcgttccca tgaaggaaaa agcctttcgc tttatcgctc cggaataggt aaatgcctgc
     3181 tttcctggca acctgcagcg gtacagcaaa gtattatcga agggctggtc tgggagcagg
     3241 cgacacccac aacgattact catccacagc aacttcacga agaactggcg cgtattcgcc
     3301 gtcagggctg gagctatgac aacggcgaag attaccccga tgtccgttgt gtcgctgcgc
     3361 cggtgtttaa cgccaataac gagcttaccg ctgcgatctc ggtggtcggt acccgcttac
     3421 aaatcaatga agaataccgt gattatctgg cgggcaagtc cattgcctgc gccagggata
     3481 tttcacgtct gttgggatgg aaaagtccct ttgacttaca agcctcataa caatggagaa
     3541 catcatgacc ctaccaaaaa ttaaacaggt tcgcgcctgg tttactggcg gtgcgacagc
     3601 agaaaaaggc gctggcggcg gtgattatca cgaccagggg gcgaatcact ggatagacga
     3661 tcatattgcc accccgatga gtaaataccg cgattacgag cagtcacgcc agtcatttgg
     3721 cattaacgtt cttggcacgt tggttgttga agtcgaagca gaaaacggcc agaccggatt
     3781 cgctgtttcg acagccggtg aaatgggctg ttttatcgtc gaaaaacacc ttaaccgttt
     3841 cattgagggt aaatgtgtca gtgatatcaa actgatccac gatcaaatgc tcaatgccac
     3901 cctgtattac tccggctctg gtggcttggt gatgaatacg atttcctgtg tcgatctggc
     3961 tctgtgggat ctgttcggca aagtggtcgg gcttccggtt tataaacttt taggcggcgc
     4021 tgttcgtgat gagattcagt tctacgccac aggtgcgcgt ccggatctgg caaaagagat
     4081 gggctttatc ggtggcaaaa tgccgacgca ctgggggcca catgatggcg atgcggggat
     4141 ccgcaaagat gccgctatgg tcgcggatat gcgtgaaaaa tgcggtgaag atttctggtt
     4201 aatgctcgac tgctggatga gtcaggacgt gaactatgcg accaaactag cccacgcttg
     4261 cgcgccctat aacctgaaat ggatcgaaga gtgcctgccg ccacagcagt atgaaggtta
     4321 tcgcgaactg aaacgcaacg cgccagtcgg aatgatggtc accagcggtg agcaccacgg
     4381 cacactgcaa tcttttcgta cgctttcaga aaccggtatc gacattatgc agccggatgt
     4441 tggctggtgc ggtggtttaa ccacgctggt ggaaattgcc gcaatcgcca aatccagggg
     4501 gcaactggtg gtgccgcacg gttcgtctgt ttactctcac catgcggtga tcaccttcac
     4561 caatacgcca ttcagcgaat tcctgatgac cagcccggat tgttcaacga tgcgtccgca
     4621 gtttgacccg attctgctca atgagccggt tccggtgaat ggtcgtattc ataaatcagt
     4681 gcttgataaa cccggttttg gcgtcgaact caatcgtgac tgcaatttga aacgccccta
     4741 cagccactaa tcactccggg cgttgctgtg acaacggtaa cgcccacata ttctaaggag
     4801 ctttttatga gcaccgcttt gcttgacgcc gtggtgaaga aaaaccgtgt gcgtttaatt
     4861 ccgtttatgt tggcgctgta tgtgctggcg tttctcgacc gttcgaatat cggttttgcc
     4921 aaacagacct accagattga taccgggttg agtaatgaag cttatgcgct gggagcaggc
     4981 attttctttg tggtatatgc gtttctgggg gttccggcga atcttttgat gcgcaaactg
     5041 ggggccagaa cctggattgg tacgacaaca ctgctgtggg gatttctttc ggcagccatg
     5101 gcatgggccg atactgaagc gaaatttctg atagttcgca ctctgcttgg tgctgcggag
     5161 gccggatttt tccctggtat gatttatctc acctcgcaat ggtttccgca gcgtaatcgc
     5221 gccagcatta tggggctgtt ctatatgggc gcaccgctgg cgttaacact gggatcaccg
     5281 ctttccggcg cgctgttgga gatgcatgga tttatggggc atcccggctg gttctggatg
     5341 tttgtgattg aaggattgtt ggcagtcggt gctggggtat tcacattctt ttggcttgat
     5401 gacacaccgg agcaggcacg ttttctgagt aaacaagaaa aaacgttgct tatcaatcaa
     5461 ctggcaagtg aagaacaaca gaaagtgact tctcggctga gcgatgcgct gcgtaatggc
     5521 cgagtctggc aactagcgat tatctacctg accattcagg tggcggttta cggattaatt
     5581 ttcttcctgc cgacccaggt tgcggcattg ctgggaacaa aagtgggctt tacagcgtcg
     5641 gtggtcaccg ccattccgtg ggttgcggcc ttgtttggga cctggcttat tccgcgctat
     5701 tccgataaaa ccggcgaacg gcgtaatgtc gcagcgctga cattactggc ggcgggcatt
     5761 ggtattggtc tgtccgggct gctttctcca gtaatggcga tcgtagcgct gtgtgttgca
     5821 gctatcgggt ttattgccgt gcagccggtg ttctggacga tgccgacaca actgctttcc
     5881 ggtacggcgc tggctgcggg gattggtttt gtaaacctgt ttggtgcagt gggcgggttt
     5941 attgccccga tcctgcgcgt gaaagcagaa acgttatttg ccagcgatgc ggcaggatta
     6001 ctgacactgg cagcggtggc ggtcatcggt tcgctgatta ttttcactct gcgtgtaaat
     6061 cgtactgttg cgcagaccga cgtggcacat cattaaatag gttaaggaac acgatgaacg
     6121 cattattaac caatcccttt aaagaacgtt tacgcaaggg cgaagtgcaa attggtctgt
     6181 ggttaagctc gactacttct tatatggcag aaattgccgc tacttccggt tatgactggt
     6241 tgctgattga cggggagcac gcgccaaaca ccattcagga tctttatcac cagctacagg
     6301 cggtagcgcc ctatgccagc caacccgtga tccgtccggt ggaaggcagt aaatcgctga
     6361 ttaaacaagt tctggatatt ggcgcgcaaa ctctattgat cccgatggtc gatactgccg
     6421 atcaggctcg tcaggtgtcg tctgccacgc gctatcctcc ctacggtgag cgtggtgttg
     6481 gggccagtgt ggcacgggct gcgcgctggg gacgcattga gaattacatg gcgcaagtca
     6541 acgattcgct ttgtctgtta gtgcaggtgg aaagtaaaac ggcactggat aacctggacg
     6601 agatcctcga cgtcgaaggg attgatggcg tgtttattgg accagcggat ctttctgcgt
     6661 cgttgggcta cccggataac gccgggcacc cggaagtgca gcgaattatt gaaaccagca
     6721 ttcggcggat ccgtgctgcg ggtaaagcgg ctggttttct ggctgtggct cctgatatgg
     6781 cgcagcaatg cctggcgtgg ggagcgaact ttgtcgctgt tggcgttgac acgatgctct
     6841 acagcgatgc cctggatcaa cgactggcga tgtttaaatc aggcaaaaat gggccacgca
     6901 taaaaggtag ttattgatat caaaggccca tggggatcgg ctgtgggcct gtgttaatta
     6961 gtggttattc gctgccagat cggcttcgct tagctgggtg gccgcgagca cctggtcacg
     7021 atcaatgccc tgttccagca tgcgcaaagc aattttaatg gcttgttcat gcataccttc
     7081 ctgccagcca atttgatgcc cttcctgccg tagccgttca gcaatagtca ttaatctctc
     7141 cttttgtagt ggtgaacgtt cggcaatctc ctcaataaaa cgggtgaaac gggaggtatc
     7201 gccgcattgc agcagataat taaacagtgt ttgtagctgg ctgtcattag tgaagcctct
     7261 aaccaaaagc gtggtgatcc tgtcgaccat gccgattaaa tcgcggtcgc gaatatgctt
     7321 ttgaatcagt tccagcagag ctatacgccg atgttgcatg atctcatcgt caggtacgat
     7381 ggtgatatcc accaacggaa aagcttcggt gtacaactgc cgggcaagtt gcggatcgtc
     7441 aaactcatcc agccagttaa gtgagtacgg gtagggcgat gtttcgccat gataaaacag
     7501 caatggcacc accagcggaa ctctgtcata gcctttatcc aggtgacgct gcatggcggc
     7561 agtggcatag cgcattagcc gaaaagccat attcttttct gcagagcttt gatgttcaat
     7621 cacgcagtag atatagccgt caccgtcgct ggtttccacg gaccacaaaa catccgagta
     7681 gtaagcgcgt aaactttttt caataaaact agtgggttcc aggcgtaagg tttgcaggtt
     7741 gcaaagcttg cgcagtggtt ctggtaaatg tatttcgaga aaatcccgtg cggtttcggg
     7801 tgtgaacata aaggttttaa ataccgcatc atgcggggag gaggttgttg attcggtcat
     7861 ggttgtccgt cacctgatat ttatgatgac gcgacattac ggttatccta ggcctttgac
     7921 atctgccagt ttcagccttt gcgagacgtt ttcagaggaa ttttcactgc gttgcaacgc
     7981 atacattggg cacggaatcg tgtacgcaaa aatgcccggt aaccacatgc ttaccgggca
     8041 tcagaaagga gtttaagcca gcgcctgggc cagtagcgta atcggatgtt cgcagcgaag
     8101 acttgtggac atctcaatct gccatttaca ggtttcgcag tcggtgacca ccagatctgc
     8161 gccgctttct tctatctggc ggaacagtgg tgcgccgatg gcttgtgagg tggggtagtt
     8221 ctcttttttg aaaccgtaag tacccgcaat accgcagcac tgggaatcca gcaccgttaa
     8281 ctcaagcccc gggattttac gcaacagctc cagggtgtag agcgtccagc ccattttttc
     8341 catatggcac ggagtgtgat aaaccacttt cagcggcagc ggtttcagcg gtaacgtttt
     8401 gccttcgtcc agcttgcgcc acagccagcg ggttgccagt tcgatatgat cgcgcaagcc
     8461 tttgttgtcg acattcagca cttccgggta ttcgtcgcgc agggcaaatg tacaggttga
     8521 ggaggtggca atcaccggaa tgccttttac tcccacagct tcgcggatcg actctacatt
     8581 cgtaattgcc tgtttgcgtg ctttatcggt aaagccgttg gcgattagcg gtacgccgca
     8641 gcatttttct ttgctgagca gttgtacacc ggtacccatt gcgttgagca ctttaattaa
     8701 atctttacct aactgcggat ggttgtagtt aacgaagcag ccgtgaaaga aagcgacctg
     8761 gtctttatat tgtgcttgct gagccgctat gctgcgatac cagcgacgga acgtgccgaa
     8821 ggagtatttc ggtagcgtgc gacgatgatc gatttttaac gccgcatcaa gcagctgccg
     8881 caccggtttc agcgaggtag cggtgttgac gattggtgcg aacggcgtgg aaacgctacc
     8941 catcaggtcg gtatgactca acacaaaatt acgcagcgac gggcgcgtgg tgtcatattt
     9001 tgcccgcgcg cgctggataa tatcgccaat cttcacatcg gacgggcagg cgacttcaca
     9061 acgtttgcag ttgatgcaat atttcagcgc ctcgtcatac agtgcgccat ctttcaaacg
     9121 cagacgctcg ccatccggcc cggcttgttt tggccctgga taaccgggat tcacccggct
     9181 caccgggcag gcggtggtgc agacggtgca cttaatgcag ttttcgaagc tggtgtcgtt
     9241 cattgttggc ctcctgcgcg ttgggcaatc tgttgagcgg catgtaaagc actgacggca
     9301 caaacaccgc cgccgcatcc ctgggcgatg ggatcaaatc cgcccagcac cgaaccgatg
     9361 gcaaacaggt tctcaatggt ttgccctgcc tgcgacgggc gtagcgtctc atcagtggtt
     9421 acaccgaact gctgccacgg ttgcggcgca aaaaaatcgc ccttatacca ttcaccccgc
     9481 gtggcggttt gtagcacatc aaggccgaga atcggctcgc gaatgccgtt acgttccgct
     9541 accagtccgc cactaaagaa actgccgctg gcgagaaccg cgaaatgtgg acgtagcgga
     9601 atatcggcgt gattgcgggt ccagatttca ttcactacgc catttttaca ggtcactttt
     9661 ttcacttcat cgcccggcat ccacacgcca ccctggcgca caaactggcg ctgtaactgg
     9721 ttttgcagac gaatgcccag cacggaaggc ggcagcgttg gcaaaagcat cagtgaacaa
     9781 agtagttttt cattcaacca acgccacagt ttgtcatcgg ctaggccgaa gcaggcaggc
     9841 atcaggatca tttcgcaggt attggcgaca ggaataagcg catcaagtaa cagcggccag
     9901 ttttcttcat tatcaaggaa acgggcgata ttcacagcgc gaaattcggt ggcgttattg
     9961 cgcaggacat ccagttccgg cagctctatt tctgcggttt caaccgaaag atccagttcg
    10021 tgcaacgaag ccgccgcaag atgcgcctga aaatccatca ggccgcttat cccgaccaca
    10081 catattttct tcgcgggcaa cggccagacg gggacttctg gcgaacttag ccaggtagag
    10141 cgcagagtgc cgagcggcgt aatccgctgg tgagccagtt ctacgctgcc ctgcaattgc
    10201 gcaccgcttt cagcgattaa tgcctgcgcc tggcaagcga gatcgagcac gcgttgtggc
    10261 ccgagaagag agtaaggatg tgcaggtgcc tgctgacgca aagattccag tccactgtga
    10321 atgtctgcca cgggttgacc atctggcaga tggctcagca aatccagcga accggatgag
    10381 aaatgcaacg cgctttgacc acgcgtgaca atggcacagc gcaggccgtg tttttgcagt
    10441 tgcaggccac agagtaatcc ggcgaggccg ccgcccataa tgacagtatc aaagcgcatc
    10501 tttctgctcc ttctccagac cacacagtcc ctgataaacc cagcgggtaa attcgctttc
    10561 gcgcagtgcg tctccccagg cgatgggttg cacgcctttc cagcgttcgt taaggaaggt
    10621 ggaaagttgc tcgatagatt gcgcggacgt cgtgacgtta aaccgttgca gcagtccggc
    10681 agcgcggcag gcgcagagtt cgccctggca ggtgcccatc cccacacggg tacgacggcg
    10741 taaatccagc aggctattaa cgtttaaatt ttctaccgcg tactgcactt cacccgcagt
    10801 taccgcttcg cactcacata ccaggctacg gtgcagacgg ccttcgctca gccaggcagg
    10861 cgtgcgatcg ccatgacgat aaaccgcaga accgcgcagc ggggcaggca gggagatgac
    10921 tttacgcaag gtaacttcag cgggttcttg tgaaccaggc agtgccagat cggcagtcgt
    10981 acaggggcgc gtgttgccca gtttgcggca taccgcgtcg gtagcccatt cagccatcag
    11041 ccgataggtc atcagtttgc caccggtgat ggtgataaat ccgtccagac catcgcgttc
    11101 agcatggtcg agcagcacga tgccacggct gacgttacgt ccgctcggat cgtcatcgct
    11161 ggcaaccagc gggcgcacgc cagaataggc ccgcaaaatg cgcgttttcg ccatcacggg
    11221 ggccagtttt tccccttcac gcagcagaat atcaacctct tctgccgtca ctcgattatc
    11281 gtcaatctcg ttgtaatcaa tacgtaaaga ggtggtacca atcagcgaaa tggtatcgcc
    11341 aggcaccaga atatcggcgt cggaaggttt acggcagcgg ttgatcacat gctggttaat
    11401 gcggtgatcc atgatcagca gcgatccttt cgccgggaac atgcgaatgc gcagatcggc
    11461 atattcggca atgtgttgcc cccagatccc agcggcatta accacgacag gtgcatgaag
    11521 ggcctgagtt tcgccggtga gatggttacg tacacgaaca ccgcacaccg tcgcgccttc
    11581 acgaatcagc cccgtgactt catgagcggt aaggataacg gcaccgtgtt ctttggcatc
    11641 cagcatgttt gctgcggtca gacgaaatgg atcaacggtg ccatccggaa ctttcaccgc
    11701 gccaatcagt gccgggttaa cggcaggttc gataatgcgc gcttgctgcg ggtctatagc
    11761 ttctgcgctg atccctgctt cttcgcaggc gcgaataaaa gtggcctgga atgagaggtc
    11821 atcttccggc agggtgataa acaggccgtt ggttggttca acgcagtgac gtgcaatgcg
    11881 tttcaggatc tggttttcac taatgcattc gcgggccgat tccgcatcgg ttaccgcata
    11941 gcgcgcaccg ctgtgcagca ggccgtggtt acgcccggtg gcaccggttg cgatgtcgtg
    12001 gcgctcaacc aaaatcacgc gcagcccgcg cagggcacag tcgcgggcaa tcccggctcc
    12061 cgttgcgccg ccgccaatga taatcacgtc acttgattgc gagtcgcgag ttttcattgt
    12121 tatccctctg aagttcgttt tttaccattt agccatagta aaaacatgaa ttgtttgatt
    12181 tcgcgcatgt tcgctcataa ttcgaaagtg aaacgtgatt tcatgcgtca ttttgaacat
    12241 tttgtaaatc ttatttaata atgtgtgcgg caattcacat ttaatttatg aatgttttct
    12301 taacatcgcg gcaactcaag aaacggcagg ttctctcact gaatcaggct gttaatcata
    12361 aataagacca cgggccacgg aggctatcaa tgttgagtat ttttaaacca gcgccacaca
    12421 aagcgcgctt acctgctgcg gagatcgatc cgacttatcg tcgattgcgc tggcaaattt
    12481 tcttggggat attctttggc tatgcggctt actatttggt tcgtaagaac tttgcgcttg
    12541 ctatgcctta tctggtcgag cagggattct ctcgcggtga tttaggtttc gcgctttcgg
    12601 ggatctcgat cgcttatgga ttttcgaaat tcataatggg ttcggtatca gatcgctcga
    12661 atccgcgcgt tttcctcccc gcaggtttga ttctggcggc ggcagtgatg ttgtttatgg
    12721 gctttgtgcc atgggcgacg tcgagcattg cggtgatgtt tgtacttttg ttcctctgcg
    12781 gttggttcca ggggatgggg tggccgccgt gtggtcgtac tatggtgcac tggtggtcgc
    12841 agaaagaacg tggcggcatt gtgtcagtgt ggaactgtgc gcacaacgtt ggtggtggta
    12901 ttccgccgct gctgttcctg ctggggatgg cctggttcaa tgactggcat gcggcgctct
    12961 atatgcctgc tttctgcgcc attctggtgg cattattcgc ctttgcgatg atgcgcgata
    13021 ccccgcaatc ctgtggcttg ccgccgatcg aagagtacaa aaatgattat ccggacgact
    13081 ataacgaaaa agcggaacag gagctgacgg cgaagcaaat cttcatgcag tacgtactgc
    13141 cgaacaaact gctgtggtat atcgccatcg ccaacgtgtt cgtttatctg ctgcgttacg
    13201 gcatcctcga ctggtcaccg acttatctga aagaggttaa gcatttcgcg ctggataaat
    13261 cctcctgggc ctacttcctt tatgaatatg caggtattcc gggcactctg ctgtgcggct
    13321 ggatgtcgga taaagtcttc cgtggcaacc gtggggcaac cggcgttttc tttatgacac
    13381 tggtgaccat cgcgactatc gtttactgga tgaacccggc aggtaaccca accgtcgata
    13441 tgatttgtat gattgttatc ggcttcctga tctacggtcc tgtgatgctg atcggtctgc
    13501 atgcgctgga actggcaccg aaaaaagcgg caggtacggc agcgggcttt accgggctgt
    13561 ttggttacct gggcggttcg gtggcggcga gcgcgattgt tggctacacc gtggacttct
    13621 tcggctggga tggcggcttt atggtaatga ttggcggcag cattctggcg gttatcttgt
    13681 tgattgttgt gatgattggc gaaaaacgtc gccatgaaca attactacaa aaacgcaacg
    13741 gaggctaatg gcatgaaatt gacgctgaaa aaccttagca tggcgatcat gatgagcact
    13801 atagtcatgg gaagcagtgc aatggcggcg gacagcaacg aaaaaatagt catcgcccat
    13861 cgcggtgcca gtggatattt gccggagcat acgctgccag caaaagcgat ggcgtatgcg
    13921 cagggagcgg attatctgga acaggatttg gtgatgacca aagacgacca tctggttgtt
    13981 ctgcatgacc attatctcga tcgtgttact gatgttgccg atcgtttccc ggatcgggcg
    14041 cgcaaagacg gtcgttacta cgcgatagat ttcacgctgg atgaaattaa gtcgttgaaa
    14101 tttaccgaag gtttcgatat tgaaaacggt aaaaaagtgc agacttatcc ggggcgtttc
    14161 ccaatgggta agtccgactt ccgggtgcac acctttgaag aagagattga atttgttcag
    14221 gggttaaatc actctaccgg gaaaaatatc ggtatttatc cagaaatcaa agcgccgtgg
    14281 ttccatcatc aggaagggaa ggatattgcg gcaaaaacgc tggaagtgct gaagaaatat
    14341 ggttacaccg gtaaagacga taaagtttat ttgcaatgtt ttgatgctga tgagctgaag
    14401 cgtattaaga atgagctgga acccaaaatg ggcatggagc tcaatctggt acagctgatt
    14461 gcctataccg actggaatga aacgcagcag aaacagccgg atggaagctg ggttaattac
    14521 aactacgact ggatgtttaa gccgggtgcc atgaaacagg tggcggaata tgcagatggt
    14581 attggtccgg attaccatat gttgattgag gagacatcgc agccgggtaa tatcaaactc
    14641 actggcatgg tgcaagatgc tcagcagaat aaactggtag tgcatcctta taccgtgcgg
    14701 tcagataaac tgcctgaata cactcctgat gtgaatcagt tatatgatgc tctgtataac
    14761 aaagcgggtg taaatgggct gtttactgat ttccctgata aggcagtaaa atttcttaat
    14821 aaagagtaat gttactgcag gatggcgttc atgcgccatc ctgtctcata tcaaattttt
    14881 ccaatcgcca ctaattgttc catgcacatt tgtagtaaaa acagtggact gccttctacc
    14941 ggcttttctt tagccagcaa cgaaatctgt cgatagaaag ttggttcgag aggaacggaa
    15001 cacaattcac ctgcaatgct tttcagcgtt aactctggtt gtaaggcgat gcctaatccc
    15061 tgtcgaataa aattcatcgc tgtatccgcc tgattaaatt cacattttat ctgctgggcg
    15121 cactattagt ggtagtggct ggtggaatct atgcgctgca aatgaagggt aaaagcggtg
    15181 tcaagctagt agtggcaaaa gaaattcatt aatacgacac gtttcattaa gattttcctc
    15241 aggtaaccac ctatagtcat tgtcgttaat aaaaacgaca ggcgataggg tatggcagtt
    15301 tcagcaaagt acgacgaatt taatcactgg tgggcaacag agggcgactg ggttgaagag
    15361 cctaactatc gccgtaatgg tatgagcggg gtgcaatgcg tcgagcgcaa cggcaaaaag
    15421 ctgtatgtaa agcgcatgac gcatcatctg tttcattctg tacgttatcc gttcggccga
    15481 ccaacgattg tccgtgaggt tgcggtaatt aaataactgg aacgggccgg tgtcatcgtg
    15541 ccgaagatcg tttttggtga agcggtgaaa attgagggtg aatggcgagc gttgctggtg
    15601 actgaagata tggcggggtt catcagcatt gctgactggt atgcccagca tgcagtatcg
    15661 ccttattctg acgaagtacg gcaagccatg ttgaaagcag tggcgctggc gtttaagaaa
    15721 atgcatagca ttaatcgtca gcatggctgt tgttatgttc gccatatcta tgtgaaaaca
    15781 gaaggtaagg cagaagctgg ttttcttgac ctggagaaaa gtcgtcgccg cttgcgtcgc
    15841 gataaagcga ttaatcatga cttccgccag ctggaaaaat atctggagcc aatccccaaa
    15901 gcggactggg agcaggtgaa agcgtattac tacgccatgt aatcgttgta ggccagataa
    15961 gacacataag cgttgtatct ggcactacaa ccaattcaca tctcgatttc aatatcgcct
    16021 tttgcccggc aacaacaggg caaaatttcc cccggctgaa taaaggctaa cggttcggca
    16081 atccagtcaa cttgacctgc aaccaggcgt gtgcgacagg agccgcagta accttcgcga
    16141 cactggtact caaccgccac attgtgggat tccagcgctg ccagaaggga agggtgttca
    16201 tcctggcaca gcagttgtgt gccagtgatg cgcagggtaa cgcgggccat cagagctgga
    16261 agttactcaa atcgtcggtg tccacttccg agtcaatctg cccgaccaga taagaactga
    16321 cttccacttc ctgcggagca acctgcacgt tatcagacac cagccaagtg ttgatccacg
    16381 ggatcgggtt ggagcgcgtc tggaacggca gatccaaacc gactgcctgc atacggatat
    16441 tggtgatgta ttcaacgtac tggcagagaa tgtctttatt cagaccaatc atcgaaccgt
    16501 cgcggaacag ataatccgcc cagtctttct cctgttgagc tgcctgaaca aacaggtcat
    16561 agcactcctg cttacactct tcggcaattt ccgccatctc aggatcgtcc gcgccgctgc
    16621 gcagcagatt cagcatatgc tgggtgccgg tcaggtgcag ggcttcgtcg cgggcaatca
    16681 ggcgaataat tttggcgttg ccttccatca attcgcgttc tgcaaaggca aaggaacaag
    16741 caaagctgac gtagaagcgg atcgcttcca gcgcgttaac gctcatcagg caaagataca
    16801 gttttttctt cagctcgcgc aggctaacgg ttacggtttt accgttaacg gtgtgggtgc
    16861 cttcgcccag aaggtgccag tagctggtca tttcgatcag ttcatcgtaa tagctggaga
    16921 tcccttccgc acgtttctgg atctgctcgt tggtgacgat atcgtcaaac acaacagacg
    16981 gatcgttaac gatattacga atgatatgag tataggaacg ggaatgaatc gtttctgaga
    17041 acgcccaggt ttcgacccag gtttccagtt ccggaataga aataagcggc aatagcgcca
    17101 cgttcggact acgaccctga atggaatcca gcagcgtctg atatttcagg ttgctgataa
    17161 aaatgtgttt ttcgtgctcc ggcagcgcct ggtaatcgat acggtcgcgg gagacgtcaa
    17221 cttcttccgg acgccagaag aaagagagct gcttttcgat cagcttttcg aagatgtcat
    17281 atttttgctg atcgtagcgg gccacgttga ccggctgacc aaagaacatc ggttctttga
    17341 gctgatcatt tttcgtctgt gaaaaggtgg tatatgccat gagtgtgtcc tgttgggagt
    17401 ttaatgccgg ataaggcatt ttacgccgca tcctgtgcct gatgcgacgc tggcgcgtct
    17461 tatcaggcct acaaatccga gccgtaggcc ggataaggcg ttcacgctgc atccggcatc
    17521 tcaatatcag atcttacatg cgccgctttc gcagccatcg tcctggattg acggtaccag
    17581 atcgtcctgc gcgtcttcag cgccgtcacg ggtgttctga taatacagcg ttttgacccc
    17641 gaatttgtag gcggtgagca ggtctttcag caactgctgc atcggcactt ttcctgacgg
    17701 gaaacgtgac ggatcgtagt tggtgttagc agagatcgac tgatcgataa atttctgcat
    17761 gatacctacc agttgcaggt agccatcgtt acccggcatt tcccacagca gctcataggc
    17821 gtcgtgcagg tgctcgtagt ccggcaccac ctggcgcaaa ataccgtctt tcgacgcttt
    17881 gatgctgacg taaccgcgcg gcggttcaat accgttagtg gcgttagaga tctgcgaaga
    17941 ggtctcggac ggcatcaggg cagaaagcgt ggagttacgc aggccgtgcg ttttgattga
    18001 ttcacgcaat gcttcccagt cgtaatgcag cggctcatta gcgatggcat ccagatcttt
    18061 cttataggta tcgatcggca ggatcccttt cgcgtaagtg gtttcgttaa accacgggca
    18121 ctcgccttgc tctttagcca gctcattaga cgctttcagc aggtaatact gaatcgcttc
    18181 gaaggtttta tgcgtcaggt tgttggcgct gccgtcggag tagcgtttac cgtgcttcgc
    18241 caggtagtaa gcgaagttga tcacaccaat acccagcgta cgacgaccca tcgctccacg
    18301 tttggcggcc gggatcgggt aatcctgata atccagcagc gcgtcaagtg cacgaaccgc
    18361 cagaattgcc agctcttcca gttcatccag gttattaatt gcgcctaggt tgaaagcaga
    18421 cagcgtacac agcgcgattt caccgttctc gtcgttgacg tcgttcagcg gtttggtcgg
    18481 cagggctatc tccaggcaca ggttagactg acgcactggc gcgatggccg gatcaaacgg
    18541 gctatgggta ttacagtggt caacgttctg aatatagata cgaccggtag acgcacgttc
    18601 ctgcatcatc agcgagaaca gctcaacggc tttcacacgc tgcttgcgga tgctgtcgtc
    18661 tttctcatat ttggtataca gacgttcaaa ctcttcctga tcggcgaaga acgcgtcgta
    18721 cagccccggt acgtcggacg ggctgaacag ggtgatatct tcacctttca gcagacgggt
    18781 atacatcagt ttgttgattt gtaccccgta gtccatatga cgcacgcggt tgccttccac
    18841 accacggttg tttttcaaca ccagcaggct ttccacttcc agatgccaca tcgggtagaa
    18901 cagcgttgcc gcaccgccgc gcacaccgcc ctgagagcag gatttcaccg ctgtctggaa
    18961 atgtttgtag aacggaatgc agccggtatg gaacgcttca ccaccgcgaa tcgggctacc
    19021 cagcgcacga atacgcccgg cgttgatgcc gatcccggca cgctgggaaa cgtatttaac
    19081 aattgcgctg gaggtggcgt tgatggaatc caggctgtca ccgcactcga tcagtacgca
    19141 ggagctgaac tgacgagtcg gggtacgcac gccggacatg attggcgtcg gcagcgaaat
    19201 tttaaatgtg gaaaccgcgt cgtaaaaacg cttcacatat tgcaggcgcg tttcacgcgg
    19261 gtagttcgag aacaggcacg cggcaaccag aatataaagg aactgggcgc tctcatagat
    19321 ttcgccggtc acgcggttct gtaccagata tttgccttcc agctgcttaa cggcagcata
    19381 agagaaggtc atatcacggt cgtgatcgat aaacgtgtcc atctgcttga actcttcttc
    19441 cgtgtagtct tccagcagat gattatcgta tttgcccatc tcgaccattt tcaccacgtg
    19501 gtcgtacagc gcaggtggct caaactggcc gtaggctttt ttacgcaggt ggaagatcgc
    19561 caggcgcgcg gcgagatact gataatccgg cgcatcacgg gagatcaggt ctgcggcagc
    19621 cttgataatg gtttcgtgga tgtcagaggt cttgataccg tcataaaact gaatgtggga
    19681 gcgcagctcg acctgggaaa tcgaaacgtt atgcagtcct tctgccgccc aatccagaac
    19741 gcgatggatt ttgtcgagat tgatgcgctc tgtgctaccg tcgcgctttg tcaccagcag
    19801 attctgattc atgtatgtcg tacctgtttt tggaattctt tccgcaatag tttcatgcag
    19861 actacctgta gtacgggaag ctgcttagaa cactatatat agggggtatg tttgggattc
    19921 actgcaagat agtgtgaaaa tggccctctt gcaagtgcat aactttgtgg ataactcagg
    19981 aaggaaaaag tggctttcgc gcaccttagg tcagacaagg tgtccgggaa agtcaatggg
    20041 aagagaaaaa tttgttaaaa ataactgttc ggcgatttct tgaacggcag aataggttgg
    20101 ataaattgat atagatggtt tattaatctt tttgctaatg attgcaaaaa ttgatctaag
    20161 cacgagtcat cacataatct gatgtatcag ttgtggtcaa tatataagcg aatgtaagcg
    20221 attgttgatg tcgaaatggt tgttttctat tcggttattg ttaaatgcga agccattttg
    20281 ttaatttacc ttatattata aaaaaattat tcattacttt aatttagttt aaatataact
    20341 ggtatccctt aaggttatta acttgaatta tgacgcactg atattattca tcaaataata
    20401 acaaaatagc cattgcatcg ggttggacaa tttacaaaag aaagataacc catattgtat
    20461 aatgcgttta aatatgccgt cttatataaa atgatggtca gattaatatg cggattatct
    20521 ttctacg
//
LOCUS       DAJVUY010000068        20418 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.068, whole genome shotgun sequence.
ACCESSION   DAJVUY010000068 DAJVUY010000000
VERSION     DAJVUY010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20418
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.068"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..4237)
                     /gene="mukB"
                     /locus_tag="OQQ72_002197"
     CDS             complement(<1..4237)
                     /gene="mukB"
                     /locus_tag="OQQ72_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HCS2011914.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKELLNDLQRELQDIGVCADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLVISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLD"
     gene            complement(4237..4941)
                     /gene="mukE"
                     /locus_tag="OQQ72_002198"
     CDS             complement(4237..4941)
                     /gene="mukE"
                     /locus_tag="OQQ72_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HCS2011915.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(4922..6244)
                     /gene="mukF"
                     /locus_tag="OQQ72_002199"
     CDS             complement(4922..6244)
                     /gene="mukF"
                     /locus_tag="OQQ72_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HCS2011916.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLQVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6241..7026)
                     /gene="cmoM"
                     /locus_tag="OQQ72_002200"
     CDS             complement(6241..7026)
                     /gene="cmoM"
                     /locus_tag="OQQ72_002200"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HCS2011917.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            7162..7941
                     /gene="elyC"
                     /locus_tag="OQQ72_002201"
     CDS             7162..7941
                     /gene="elyC"
                     /locus_tag="OQQ72_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HCS2011918.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(7918..8811)
                     /locus_tag="OQQ72_002202"
     CDS             complement(7918..8811)
                     /locus_tag="OQQ72_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HCS2011919.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(8965..9711)
                     /gene="kdsB"
                     /locus_tag="OQQ72_002203"
     CDS             complement(8965..9711)
                     /gene="kdsB"
                     /locus_tag="OQQ72_002203"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCS2011920.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(9708..9890)
                     /gene="ycaR"
                     /locus_tag="OQQ72_002204"
     CDS             complement(9708..9890)
                     /gene="ycaR"
                     /locus_tag="OQQ72_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HCS2011921.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(9942..11174)
                     /locus_tag="OQQ72_002205"
     CDS             complement(9942..11174)
                     /locus_tag="OQQ72_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaQ family DNA glycosylase"
                     /protein_id="HCS2011922.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQVITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11211..12197)
                     /gene="lpxK"
                     /locus_tag="OQQ72_002206"
     CDS             complement(11211..12197)
                     /gene="lpxK"
                     /locus_tag="OQQ72_002206"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCS2011923.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAEQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12194..13942)
                     /gene="msbA"
                     /locus_tag="OQQ72_002207"
     CDS             complement(12194..13942)
                     /gene="msbA"
                     /locus_tag="OQQ72_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HCS2011924.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(13979..16251)
                     /locus_tag="OQQ72_002208"
                     /pseudo
     CDS             complement(13979..16251)
                     /locus_tag="OQQ72_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC family protein"
     gene            complement(16458..16742)
                     /gene="ihfB"
                     /locus_tag="OQQ72_002209"
     CDS             complement(16458..16742)
                     /gene="ihfB"
                     /locus_tag="OQQ72_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCS2011925.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(16902..18575)
                     /gene="rpsA"
                     /locus_tag="OQQ72_002210"
     CDS             complement(16902..18575)
                     /gene="rpsA"
                     /locus_tag="OQQ72_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCS2011926.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(18686..19369)
                     /gene="cmk"
                     /locus_tag="OQQ72_002211"
     CDS             complement(18686..19369)
                     /gene="cmk"
                     /locus_tag="OQQ72_002211"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HCS2011927.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VATFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(19542..20305)
                     /gene="ycaL"
                     /locus_tag="OQQ72_002212"
                     /pseudo
     CDS             complement(19542..20305)
                     /gene="ycaL"
                     /locus_tag="OQQ72_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase YcaL"
BASE COUNT         4915 a         5656 c         4951 g         4896 t
ORIGIN      
        1 catccagtcg cgctgcttca tcgaggaaca gcagacggca aggagagata tctttaccgc
       61 gcaggcggcg agattcatct tcccagcttt gtaccaccat caccagaatc gacataccgg
      121 taccaatcgc ctcaccggtc gacaatgcac cagactctgc gcgcaaccaa ccatcggaac
      181 cacggttaac ctcaacttcc atttccagat agttgcggta atccagcagt tcttcgccaa
      241 tggtctgcgg cgtgcgctgc cccatatcaa tctgcggatt aagacgctga tacaatttcg
      301 ccaacgcttc cgagaaggtc agacggttgc tgttaaacag atcctgatgc tgctcgtgct
      361 gttcagagag cacatccagc agcatggcgt gcgtttcacg cacgttcacg ttgaggcgca
      421 cgctgttcac ctgaccaaac gatacgttct gcaacccctg gttgagcata cggatacggt
      481 tctgctcgcg ctgaatggtt ttgcgaatga tgttcgccac gctgcgggaa ctgatcacca
      541 gtttctgttc acgggaggtt aattcttcgg tcagacggct aagttcgatc tccatctgtt
      601 cgatagcttc caccggatca tcggtacgaa taatatcctg acgaatacgt tcacgcagat
      661 gctgataagc cgccacgaag aactgaattt tacgctccgg acgtttcgga tcttccgaca
      721 tgcgcagcac gtcgcgcaga tgttcgttat ccgccaccgc cagacgcagc gcacccaatg
      781 ccttatccga catagagcgc aaatcatcag cggagagata agccagctca cgacggtgta
      841 agcggcgctc aacgccgtta tctttcacca tgcgcatcac cgcacaccag cccgctttgg
      901 cggtcactac ctgctcgcgc atctcaaagt aatcccgctc cagcttgcgc agtttgcggg
      961 tcaggttgtc catctccgct tcgcagaagg taagcgcttt ttccagttga ttgcggcgtg
     1021 aacggttatt gctcagttgc gcatgcagct cgtcacggcg aatacgcgcc cgctcttctg
     1081 ccccgctatc agcacacacg ccgatatcct gcaattcacg ttgcagatcg ttgagtagct
     1141 cttttttggt gtcgtaagaa cttttcagcg aagccagcac ctggttgtac tgactcaact
     1201 gcgctgcgtg accgcgcaac gcttcgcgag cacgggtacg ctccgcttcc gcctgttcca
     1261 gacgttcacg cagtttttcg ttgagatcgc tgttaccgct aagcatttct gccgagtcag
     1321 agtagctaaa gtgcgcacga cgctgcacca cttccgtcag ggcaaacgcc tgctgacggg
     1381 catcgcgctg catctgttga gagtacgcgt aatcttcttt taactgttcg aactgttccg
     1441 ggtcgctctg caataccgaa acgatcggtt ccagtttcgc cagttgattg ccaaactgct
     1501 gaacaaaacg cgcggcttcc tgggcttcat ccagacgttc gcggatttca tcgacgcgat
     1561 ccgccaggct atcatcagcc aacaggttga gacgcggcag aatgcggttc agcgccgtaa
     1621 cgccctcttt cgcctgctca aactgaatac gctgctgctg gttatcattt tcatgattac
     1681 ttaacgcccg ctccagttcg acgcgacggc tgttcagttg acggatttct gcttccgggt
     1741 cagactcaaa cacaaccgcc agatgactgc cgataaagcg gctgaacgcc tgatgcagac
     1801 gctgagtttt ctgtacatca aaggagagcg tggcgaagcg ttcggaaagc acttcacgct
     1861 cggcatggag gctttcaata cggctttcac gcgcagcacg accaaacagc ggcacttccg
     1921 ggaaacgtga ataacgccac tgacgatcgg cgattttcac cactaccgct ttttccagct
     1981 catcaacgct gaacacgctg tcatcgaatg actgcggatc tccttcgatc agatagagat
     2041 cttccgggca atcggtcaag ccatctaggt gttcagttac ctgtgacaga tctggcacca
     2101 cgatggcgtg gcgtgacggg ccatacagcg ctgagaagta cggcgcatct tccaggctaa
     2161 cgtcgtcata aatttctgac agcagcacac caccaaaacg ctccgccagc gcgttcagac
     2221 gctgatcttc agagccgcca ggctggctta aacgttcgat ctcttcatcg acggcgtttt
     2281 tgcgcgcgcc cacttcatcg cgttcaacaa tcgcctctcg ctcacgctcc agcaactgtt
     2341 gcagatattc ggtgacgtcc tggctggagg taaactcttc gccgcactgt tcgctcaact
     2401 ggttgagact gttttgcgct gccagccaaa ccggcgcacg ctgcatcaaa ctctgaatgc
     2461 gagactgcag ctgttcctgc tcctggcgca gtgccatgcg ctcttcacgg gcgttagaca
     2521 cgctatcgga aagagaggca atgcgtgctt ccagttcctg atgcagggct tccagttcgt
     2581 cgatatcaaa attcttgccc tgacgtttgc agaaatctgc cagcagacgc tcagcttctt
     2641 gctgctcgcg tagacgctgt tccagttcgc ttaatcgcat ccgcagcggc tgaacctgct
     2701 ctgccaggtg acgctgatcg accccttcgc gcaatagttc gcgagcgaca tcccacgcct
     2761 cgttacgcgc cagtgggccg ttgattgcca ccaccagctg ataagcctgc tcaaactggc
     2821 tgtgcgcggt ttgcgccatg ctcattttct gctcaagaga gagcattttt tcagtcgctt
     2881 ccagctcttt cgcctggaag gtttccagcc attcggcggc gctgtcggcg gttaagtccg
     2941 gcagatggca cagttctttg gcacgattaa gcgcagcaat cgcctggtta tactggatcg
     3001 cgcgcgtttg ctggacgtcc agcgcctgct ggtagtcagc aagctggctt ttcagctcgt
     3061 ccacttccag ttcggcagct tccgcgcgag cctcgttctc ttcctggcgt tcgatggctt
     3121 ctgccaccac ttcgttttgc tcttccagac ggatctgcag ctcatcgaga tccgcttcgt
     3181 agcgttcgat cttctcctgc tgacgcagtg cggtttgcac caggttcagg tgatcgctgg
     3241 ccgcctgata atccgcttcc agatcgcctt cggcaccgtt gtgctctgcc agctcacgcg
     3301 ccatatcgac gtgtttgtac tgctcagccg ccagttgctg acgcgaagta tgtaactcgc
     3361 gacgaaactc cagggctttg tcgagatgga cacggcgctc gttggcgtga cgcatgtagt
     3421 ccgccgccac gtagttggta gcttcgctga tcagatgctt aaacaggtca cggtccgact
     3481 gggtgacacg aatcgcttcc agcgtcatgc ggttttcacg cagcgccgct tccatgtcct
     3541 ggaacgcttt acgcacgccg ctgttttccg gcaacagata gtcgcgcaga gaacgggtaa
     3601 tggcactgga gatcccgcca tacagcgaag cttcgatcag acgatagaat ttgctacggt
     3661 cagatgcgga gcgcagacga cgcgcgatga tgcccagatc gaacatcagc gagtggtaat
     3721 cggtaatgga gttgaactgt ttaaactgca cgccttccat cgcctcgagc ttgtctttca
     3781 gctcgttaag cggcagcacg cgcgcctggc gttcgttcag ggtttcggtc accagctgtg
     3841 tcggctgcac cgacatcggc agtccctgaa tggcaaatgg tttgatatcc actttacgat
     3901 cgcgtccggc aacctgttgc agacgcacac cgaccaccac gcgctggtgg cgcgagttaa
     3961 tggtgtcgag catcgaataa cagacacccg ctttcagctt accgtgcaga cctttatcgc
     4021 gcgaaccgct ggtggccccg gcttccgtag tgttacggaa atgcagcagg gtcaggtcgg
     4081 ggatcagcgc cgtaacgaac gccgccatgg tggtggattt acccgccccg ttaccgccag
     4141 aaagcgtcgt gaccagctcg tcaaggtcaa aagttcgggc aaaaaagccg ttccagttaa
     4201 tcagcgtcag tgagcgaaat ttaccgcgtt caatcattat tcttcctctc cgctatctgg
     4261 ctgattctct tcggtttcat cgttgagttg cagatgattt tcaatcggca ttgcttcgcc
     4321 atcacgaatc aggcgacgct gtgcttcacg gggatcgtcg ccagcacgca catcggctcc
     4381 gaagcggaac accgattcgg taatgcgaaa cttgctgctg tcgtggccca taaaccacac
     4441 catgcctaaa cgacgcagac ggttgagcga agaacgtact ttctcctgca acttctgacg
     4501 gtcaacgtct gaaccggttg aacggttgtt caccagtttc agcagttttg cttcatcggc
     4561 cagggtgagc agttcgtcgt acagttcctg ctgggtgaaa atcccctcat tcgccagccg
     4621 ttccgggctg agatagagat aacagaggat tttcccgacc atcatatcca gttccgacaa
     4681 gacggaacgc gggataagag tggtggaacg tgggcgtaaa tagaagaacc cttccggtgc
     4741 gcgaataagc tcaacgttat aacgcgcgta aaactcttcc agatattcct gaaaatccat
     4801 caggaatgca tgattatcca gttcgtcgag gccaatatgg cggcctgaac gtaaggcgct
     4861 gtccagcgcc ggaaataacg gattcgccag cgcctgcgcc agcttaaccg gcatcacttg
     4921 ttcaatattt gtcgatgaca tgcgcctgta ccttggctcc gtaatcatta atcggctgcc
     4981 atttcgctgg cagtccggtg aaatctgctt gcgctacgcc aagacgtacc gcctgatcaa
     5041 taacaatacg cgcaacgtca aagtgacgtg cacgcggata ctgtgacaga tattcgcgta
     5101 ccaccagacc aagatccagc ggcacttgtc tggttttgta cacggcaagt tgttcttcga
     5161 tgatcgccgc cagctgttcg cggatctcgt taaactcttc gtattccaga tcctcaggaa
     5221 gttccccagt cacttcttca tcgcgcagtg ccatctcttc gtcacgcata tccagcagac
     5281 gatcggcatt ggcataagtt agcgcccacg gctcatcaaa ataggtttgt accgactgac
     5341 gtaaccgctg agcaaagacg cggtttttat ccatatcgat cgcggtacga ataaatttgt
     5401 gtacgtggcg gtcgtagcca atccacaagt cgatggattg ctggccccaa ctgataatac
     5461 gatcgagttt gctctgcaga tcgaacacca gacgatcgac gaaatgcaga tcgtcatggg
     5521 tcatcgtcgc atcctgaatg cgcaacagat tagcctgcaa tttgtcgcct gccgcttcca
     5581 gcgtatcctg caattcacgc agcgttccgg aagtttccga aagcaacaat tcacagctgg
     5641 aaatcgccgc ccgccagtct ttgttcagca actgggcgat atcgtccttc acctgctgct
     5701 gctgttcgtc catcagacgt tgcgtcaggt cgatactgtc gaaaatttct gctaccgaat
     5761 atttcagtgg cgcatagaca ttacggtgcc agtgaaattc atcaccgccc tcttcggcgg
     5821 catctgctgc gcgtttgagc tcacccgcca caatcgacaa ctgcatagaa agacgcagcg
     5881 tagaaaactc gcgctgacgg atgtagtagt cagtaatgcc gatgccgagc ggcgtcagac
     5941 ggtaaattgc gttcccttcc gcctgctcgc tggtaaagcg gttcagcaga cgttgacgca
     6001 ccatgtcgtt gatcgcgtta ttggcgcgca cgccgatggt ttcgctggtt tgctcaaacg
     6061 catcactcac atggcggaat gcatccacca gctcgccttc actcatctca ccatccagac
     6121 gctcgccgtt cagcgtggca accgccagca gaaaagagag tcggtctacc tgcagcgaga
     6181 tggagaagtc attttttctg gcccaggcaa ccagttcggg gactgtctgg gaaaattcac
     6241 tcatacttta tccttgctct gcggtttgcg cgcggtgaca tgaatataac gccccagggt
     6301 aatatacggt tcctgacggc aataacgcgt ttctaattca agtaatgctt catagcagtc
     6361 gcgctgctgg tgcttctcgc gcagataatc atgaaacacg cgaacgcctg tcttacccat
     6421 aatttgccaa ccagcttctt ccagccacag ataaacctgc gccgggtcgc gtggataatc
     6481 tggcgaaagc gtccgttttt tctttttcgg cattcccgcc tgcacgtaat caaaattccc
     6541 ggcgaccatg ttatgcatca acaaaccatg cgcattgtag aacattaacg acaacacgcc
     6601 gcctggacgc aacactgacc acagggtctg caatacactg cggggatcgg ccacccactc
     6661 gagcaccgca tggaacaata tcagatcaac gggcgtttcc aaatgcgaag caacatcctg
     6721 agcggcgcaa tgtataaatt gcatgttgtc gctcacacct tttgcttctg ccgcctgttt
     6781 tgcgcggtcg atcatctgcg cagaaagatc gcataaaatg acctgatgcc cacgctcggc
     6841 cattttgatt gcggtctgcc cttctccacc gccagcatcc agcacacgca gtttttgcgg
     6901 gcccatttcc gccagcacgc gatcgagatc ctgccacaga atagcctgtc gaagctgccc
     6961 tttggtggtg ccgtaaatgt tgcgggaaaa cttttccgca atatcatcaa aattgcgatc
     7021 ctgcattgct ttctccaccg gttggctaag acgttttctg ataaagacgc tattttgtca
     7081 cagccacggc gagaatgaac ccgtctggtg taatatcgct ggcgatccct tgctatatgg
     7141 ttaaaaaagg aaccagaaag gatgcttttt acactgaaaa aagtgattgg caatatgttg
     7201 ctgccacttc cgctgatgtt gttaattatt ggcgctggcc tggcgctgct gtggtttagc
     7261 cgttttcaaa aaaccgcgaa gatttttatt agcattgggt ggctggcact cttgttattg
     7321 agtttgcaac cggtagccga ccgcctgctg cgtcccatcg aaagcaccta tccgacatgg
     7381 aataattcgc aaaaagtgga ctatatcgtg gtgctcggag gtggttatac ctggaacccg
     7441 cagtgggcac cgagctctaa tttaatcaat aacagtctgc cacgcctgaa tgaaggtatt
     7501 cgcttatggc gcgaaaatcc gggatcaaaa ctgatcttca cgggaggcgt agcaaaaacc
     7561 aatacggtga gtacagcgga agtaggtgcc agagttgcgc aatcgctggg cgtgccgcgc
     7621 gagcaaatta tcaccctgga tttgccaaaa gataccgaag aagaagctgc ggcagtgaaa
     7681 caggcgattg gtgacgcccc tttcctgctg gtgacctccg catcacatct gccgcgggcg
     7741 atgatctttt ttcagcagga agggttaaat cctctaccag ccccggcgaa tcagttggcc
     7801 atcgactcgc cgcttaatcc gtgggaacgg gcaatccctt ctccggtctg gctgatgcat
     7861 agcgatcgtg ttggctatga aacgcttggc cgcatctggc agtggctgaa aggtccgtca
     7921 ggcgagccac ggcaagagtg attttgatgc cagatcgaag ttgcgccgac taaatcgtcc
     7981 ggtattaacc agttgcgcaa cttcatccca taacacatac aaccaacgcc gccagatgaa
     8041 cgactccgcc actggcgcgc gttgcaggta actccagagc aaatcttccg ccagagaatt
     8101 atccattagt cggaacagtt cgtattctcg cggtgcccaa agcattagtc ccggcccgac
     8161 catcgccagt aactgatcgc tgcgcgaatc tttcagcatg ctgcgtaaac agaagttacc
     8221 gtgaatcaac acacaattgt cgttaaagcc ttcaaataat gccgggagac attcgcgagt
     8281 gcgaaacagg atccgcttat cctgcatcgt cagaccggtg ttattgaact gattgagcgt
     8341 ggtccatagc acttcaacat gttgccggta ccatgagggc cagaaatttt cctgagtatt
     8401 gtcgaccgcg ccgacgcaac cgcgactgtc ctgacggtgc catgccagta aggcttcaac
     8461 gatttggtct ttgagctgtt cccagcgttc tggtgttcgg gctggtgcct ccaccgaaac
     8521 accacgcatc cgctccagta gcaggacatc agggccgggg tgttcttcat gcgtcatcac
     8581 accataaata gtcggcatac ggacagtccc acttcttgcc agcatggtgg ttttccatgc
     8641 cagttgtcgg gcttttccgg gcgtactaaa gcttcttgcc attaacggca ttgggtttcc
     8701 ctggctgtca tacaaagccc acaacgccgt atccgctttt tcattgacgc actcaatacg
     8761 actgagtttt tcgcccagta aatggcttaa ttcggcacgc agctgttcca ttcagattac
     8821 cctcataaaa gctactgctt tcataatgag cgccaatata aaagatgtca cctgaatgag
     8881 atcaattgtt gaaaagaaaa attgaggaaa atcgtaacgg tacgacactc ctcccaaaat
     8941 tggctgaagt gtcgtgaagt gaaattagcg catttcagcg cgaacgcgct caagatcttc
     9001 aggggtatcc acacctgtgc caggaacttc ctgagcaaca gcaacatgga ttttttcgcc
     9061 gtaccacaga acacgaagct gctctaacat ttcgatgtgt tctaacggac ttgcctgcca
     9121 gttgacgtaa cgacggataa agcctgcacg gtagccataa atgccaagat gacgcaggaa
     9181 gttatcgcca acggtttcaa ggccttctgc aaaacgatca cgatcccaag gaatggtggc
     9241 gcgtgagaag tacagtgcat acccttcagc gtcgagaacc actttcaccg cattcgggtt
     9301 aaacgcttct tccgcattgt ggattggcac cgccagagtc gccataccca cctgacgctg
     9361 agcgaggtta tcagcaacct gacgaatgat tgtcgcaggg atcatcggtt catcaccctg
     9421 cacattaacg atcaccgtgt cgtcgctgaa tgcgcatttt tcgacaactt ccgccagacg
     9481 ttctgttcct gactgatgat cggcgcgcgt catacatact tcaccgccag cggcttcaac
     9541 ggcgcgggca acatcctcat gatcggttgc cacgatgatg cgctcggcac ctgattcacg
     9601 cgcgcgttca agaacatgaa caatcatggg tttgccgtta atatcaacca atggtttacc
     9661 gggcagacgc gtggacgcgt agcgcgcggg aataatgacc acaaaactca tgatttactc
     9721 tcatcagcag tcagcacgcg ggcttccgtt tccagcaaca ctggaatgcc atcgcggagc
     9781 gggaaagcca ggttatccag tttgcaaata agctcttgtt tttcctggtt ataccaaagt
     9841 tttccgttgc aaaccgggca ggcaatgatt tcaagcaaac gatgatccat agttcctcca
     9901 gatggatcgg gttatgaatg cataaatctt atcataatca tttatgcgac ggggtctatt
     9961 tcccagccag tgcggcaatc agtaaagaga ccttgcgggc agcgtcctaa tgtcacccgc
    10021 gttgcctgct gccagctcgc gaaatcagta atcacctgac gtaacccttt ttgcagcatt
    10081 gtcgttggtt taatgccttc ctgtaaccac agagagataa cttcaaggat gcctgtctgg
    10141 cgatgcattt tggcatccat tcgcccaact aattgcccac gatgtaataa tggcagaaca
    10201 aaatagccat actggcgttt cggcgctggg gtatagcact ccagccggta gctaaaatca
    10261 aaaagctgct ctgcgcgttt gcgatcccag acaacaggat caaaaggcga aagtaccgcg
    10321 ctgtgcgttg cagtgagctt tccggccagc gcacgctcga gtagcggcag caaatcagca
    10381 tgcagccaaa gattgcccaa tttttcaaca tgcacagcaa tgatttgctg ctgttcagcc
    10441 ctcgcttcgc gccacgccgc cagtgccgga cgtttcagcc gatagtaatc tgccagccac
    10501 tgttcgcgga atattcccag gctacgcgca ctgttatcca gcatgatgat ttctgcttct
    10561 gtttgcgaaa cgagatcgcg ctcatcatcc cagtcaggca tgacacggtg ggttaaatca
    10621 taaacgcgct ggaagttgcg ccgttcaatc accatcacct ttccggcagt aaataaacct
    10681 tccagatgcc gtttatgcgg tttccattcc caccagccgc ttgcaccttt acgaggatgc
    10741 tcaaaatcgg ctgaacgtac cggcccctta tcatgaatat gctgaattaa ctgtgcaatt
    10801 tccgcctcat gttcctgcat ccaggcgtct ttgtatttcc agcccatttt ttcaggtgcc
    10861 agcatgcggt ggcgaataag acgaaagtcg ctacgcggca taaagcaggc ttcatgcgcc
    10921 cagtattcca ttaattcgcc acgcgccaga gactcatcca gccactgggc aggataattt
    10981 cccagacgac tgaaaagcac cagatatgga ctacgggcaa caatattgat ggtatcgatt
    11041 tgcagcaagg acatgcggga gatcgttgcc ggaatatcct ccaacgacgc tcgacggcgg
    11101 ggtttgttta acaggccttg tgcggcaagg tgaagattac gcgcatcagc aagggagagg
    11161 tgcggcagcg acattcatga ctccatcaat cgaacgctgc cgcggcgtaa ctagttgcca
    11221 gaagccagcg aggttagttg cgtaagcagt ttcgctggtt catcacctga aagctgtgcg
    11281 tctacaggca aataccacca attttcttct gcaaaggccc ggcatttcac cgcatctttt
    11341 tcagtcatta ccagcgtttg ctcggcgctt accaacgcac tgacatccgc atggttcaaa
    11401 gactgatgat cggccagcgg tacacatttt tccggttgta cgccacacat cttcagcgtg
    11461 gcaaaaaagc gcggcggatg cccaatcccc gccatcgcca ctacatgttc aagctgagca
    11521 acgtcacaac gcgtaccggt acgtaaattc accgcctgac ccggcagcag atgcatggga
    11581 atttcaccgc tgcgagggac accgccgttg acgattaccg catcaaccga ctttaagcgc
    11641 cccgctcgct cacgcattgg ccccgccggc aaccaccagc cattgccaaa gcgacgcaca
    11701 ccatcaataa cgacaatttc cacatcacgc gccagacggt aatgctgtaa accgtcgtcg
    11761 gttacgatga tctgcacatc agggtgttgc gccagaatgg cttttaccgc atcagaacga
    11821 acgggagaaa ccgcaacagg cgcatcagtg cgttgataaa tcaacacagg ttcatcaccc
    11881 gcctgtgctg ttgtggtatc tgccgacaat aacagcggat aagattcagc cttactacca
    11941 tatccccgcg atacgacccc cacgcgaata ccgcgctgtt gcaactgttc caccagccag
    12001 acaacgaccg gggtttttcc gttgccgcct gcggtgagat taccaaccac gacaaccggt
    12061 acgggggcac gccaggcgcg cttcagtttt agtttatagc aaagacggat cgcgccactc
    12121 accaggccat acaaccagga gagtggcagc aatagccgcc acaaagggga ttcaccagac
    12181 cagatttttt cgatcattgg ccaaactgca ttttgtgaag ttgcgcgtaa acgccgcggt
    12241 gctcaagcaa atcgttatgc gtaccgcgtt ccacaatgac accatcctcg acgaccacga
    12301 tttcgtctgc cttttcaatg gtagacaagc ggtgggcaat caccagagag gtacggtttt
    12361 tctgcaactc atccagtgcc gcctgaatcg cacgttcgga ttcggtatcc agagccgagg
    12421 tagcttcatc cagaatcaga atcgggctat cacgcagcaa ggctcgagcg atagcaatac
    12481 gctgacgctg accgccagag agcagcacgc cgttttcacc aatcactgta tcgagaccgt
    12541 tatccatctt attgatgaag tccatggcgt aggccatacg cgccgcttct tcaatttgct
    12601 cacggctgta ctgttcagtc cgtgcgtaag caatgttgtt agcaaccgta tcgttaaaca
    12661 gatggacatt ctgcgacacc agagcaacct ggttacgtaa cgacgccagg gtatactcgc
    12721 gcagatcgtg accatccatc aggatttcgc cttcatcaat atcgtaaaaa cgagtgatca
    12781 ggctggcgat ggttgattta cctgaaccag agcgtccaac cagagcaacc gtcttccctg
    12841 ccggaatttt caggttgatg ttacgcaatg caggtacgtc acgtcccgga taagtaaagg
    12901 tgacattgcg gaattccacg tcgccagtcg cacgctcgat cacgcgctta ccttcgtctt
    12961 tctcctgctc actgtccaga atggtaaaca gcgtctgaca agccgccata ccgcgctgga
    13021 actgggcgtt aacgttggtc agtgatttca gcggacgcat cagtgcaatc attgaagaga
    13081 aaacaacggt aatcgtacca gcagtcaggc tatccatgac acttgggaag ctcgccgcat
    13141 acagaacaaa cgccagcgcc aaagaggcga tcagctgaat gatcggatca gagatggaag
    13201 aggctgaaac cattttcatc ccctgaagac gcattcggtt gctgacttta tcaaagcgtt
    13261 tcgtttccac ttcctgacca ccgaaaatca atacttcttt gtggcccttc agcatttgtt
    13321 cggcgctggt ggtcacctgc cccatggtgt tctgcatgtt tttactgatg ttgcgaaaac
    13381 gcttcgatac tacgcgaatc gcaatcgaaa caatcggtgc cagcacaatc aaaatgatcg
    13441 acagttgcca actgtaatag aacatcatga tgaacaggcc gatgattgac gcaccttcac
    13501 gcacaaccgt tatcagtgcg ccggaagaag aagaagcaac ctgttcggaa tcgtaggtaa
    13561 tacgtgacaa cagcgtcccc gttgactgtt tgtcaaaaaa tgaaaccggc attcccatca
    13621 tgtgaccaaa caggcggcga cgcatggtca ttaccacctt tcctgatacc caggagatac
    13681 agtagctgga gacatagctg gtgataccac gtaaaatcat cagcccgatc accaccagcg
    13741 gcatccacac cagcacggag cgatctgttt taccaaagcc atcatcaaga agtggcttaa
    13801 ggagcgataa catgaaggta tcgctggctg cgttgaggat taacgctacg cccgccacga
    13861 tcagacccgc tttaaaaggc gcaatggttg gccacagtcg gcggaacgtc tgccacgtag
    13921 agagatcttt gtcgttatgc attcaaaaaa ccagcatttg ttgaaatagc cgcatattct
    13981 acccgttatc cactggcacg ccaaaccact gatgatacca acgaggtaaa atttgctctc
    14041 tgaggctgct aatccgccag ccttgcgctg aaaaattgac cgtcacttga ccctgatgtg
    14101 gagtatcaag ccattgatat ccttgctgtt gatagcgatg cttaacttta ttagagggca
    14161 atcgccatgc gttatagcgt tatagcgcga tgccgatgcg agtgccactt ttccattcac
    14221 tcgctgaatt aatggcaacg atgatgaggt attactgcca tggtgaggta cctgaagcaa
    14281 tgttgtctgc acttgctgcc agtaacggct tagcatcttt tgttcagcgg ggacttcaat
    14341 atcaccggtt agaagaatgc tattcgtccc gtcataaacc ttaaccacac aggaatggtt
    14401 atttccttta tcgttgctag cttgtaaagg ccagtgcacg ctgaaacgca atccttgcca
    14461 ttgccacgct tcgccacgca cacagggctg atgatgttcc cagtttaacg gacttctgat
    14521 ccataacatc ggccatgtgt gcaatattga gtccagccct ccccggtgat ccagatgttc
    14581 atgactcaga ataacgcctt ccggttcaag attatgccag tggagccagg ggataatcag
    14641 ttgttgccca ctatcccctt cgggccaggc cagtcctgtg tcatagagaa tcgctttgcc
    14701 gtttctggct atcaccattg ccagcccttg cccgacatca agcatgtaca cctgccactc
    14761 gtcaggtcga ggtttttgcc acagcggcca gcacatcagc aagcctacag ccacacacat
    14821 tgctggcaac gttcgccagg cgtttaatcg ccataccacc agtaagaacc atggggaaaa
    14881 tgatagccat tgccaacgtt cagcaatgtt gatccaccct tcttgcaaac tctttaaccc
    14941 ccagaaaagt aaagccaaag accggtcggc aagaaaccat aacccttgct ccaggattaa
    15001 cggcccgctt aaatgcacaa ccatcgcggc gaggatcaac ggaaccgtga taaatgtcac
    15061 caagggaatt gctaatagat ttgcaataaa cgaggtcaga ctaatgccat gaaatatgac
    15121 gatttgcaca ggcataagca ggagtgtgat tcccagttgc aaatgaatga gggaaacaac
    15181 tgcacgcaat accggcggca gttgccactc aggacaggga aaccactggt accaaaaaat
    15241 cagtgccgcg accgcagcgg cagagagcca taaactttgc gagagaatgg caacaggatc
    15301 catcagcaaa attgccgcca gacaacatat ccatacatcc cagccactcc actgtcgccc
    15361 acttaactta agcattcccc acgtagcaag cgccaccacg gtacgcaatg caggaggttg
    15421 cattcccgtc aaccaggcat aaaaagcagc acagcagatt ccaccaatta atggcatttg
    15481 ccagtggatc cagcgcccag gcagaaaaac ttgcccaccg cgaatgagtc cggcagccag
    15541 caacgccgca aaagcgatgt gcaatcccga tatcgccatt aaatgcgccg ttccagtatc
    15601 acgcatgata tttttgattt ctttggggac ggataaccgt tcccccatac ctaaaccaag
    15661 aataaccgca ttccacatat agggttgcag cgttgtttgt agtgacgcca gatactgtgc
    15721 acgcaggcta caattcggtt caatgacact tgcctgcaga aagcggccga tgagcggctg
    15781 atgctgggca atggcataac gctggctatc aaagccgcca tcattaagtt ggccatgaac
    15841 tgcacgaact ttgagtttca ttgaccattg ttgtccagca caaaccgctt gcggaagata
    15901 ttcgccatac agcacaagac ctggcgcagg gaatatacgt cgaccttgta gatgagtaat
    15961 ttgaccgtaa tgagtggtca tgccgtcagt tgcagtgatc tcaacaattg catcctgcgt
    16021 cgcgccagtt aaggtttctc ctgcccacaa aatttgcttt gctgataata tgccccaaac
    16081 gaaaaacagc aacgtcagcg cgatataacg gacggtttta acagggataa atgccagtac
    16141 gcaggcgaag agagtcagaa acgcaagggt taatgtccca ggcaattggg gcaaaatcag
    16201 caacggaaaa attccgcaaa ttatgcatac gccgactgtc gttattttca tgcacccctc
    16261 cctgtttatg gaaagtgtgc aactttgttg agcggttgtc tggtgggaat tttgcgttcc
    16321 ccgaggcaca ttcagaagaa tttaacgaaa gggtgaaaac tgctcaaaac tctgcgaggc
    16381 agcttccagt tcctgattag agaaatgaaa aaagcacccg acaggtgctt ttctcgcgtt
    16441 caagtttgag taaaaactta accgtaaata ttggcgcgat cgcgcagttc tttaccaggt
    16501 ttaaagtgag gaacgtattt tccttccagt tctactttat cgccagtctt cggattacgt
    16561 ccggtacgtg gtgcgcggta gtgcaaagag aaactgccga aaccgcggat ttcaatacgc
    16621 tcgccctgcg caagagtcga ggccatatgc tccagcatct cttttactgc atcttcaacc
    16681 gtcttggcgg gaatgtgcga ttgctgggtg gcaagtcttt ctatcaattc tgacttggtc
    16741 atgattcctc cggttcctta aaggcaaatt aagcggctgc tgttgctgca ttgattaagg
    16801 gcggccgtag ccgcccttag tgcttgatta caggacgaaa cctgcaatct gtcaagtaaa
    16861 ctcaacaaac ttcggaataa aaatcccgaa gagtcagaga attactcgcc tttagctgct
    16921 ttgaaagctt cagccattgc gttgttggag aagtttgcat cttcctgttt gttaacagtt
    16981 gcgattgcat ctttctcgtc agcttcgtct ttcgcacgaa cagacaggct gattgcgcgg
    17041 tttttacgat caacgccggt gaatttagct tcaacttcgt cgccaacgct cagaaccagg
    17101 gtagcgtctt caacgcggtc acgggatgct tcagaagcac gcaggtaacc ttcaacgccg
    17161 tcagccagtt ctacggttgc gcctttagcg tcaactgcag ttactttacc ggttacgata
    17221 gcgcctttct tgttcagagc aacccagttg ttgaacggat cttctgcgag ctgtttaacg
    17281 cccaaggaga tacgttcacg ttctgcgtca acctgcagaa caactgcagc gatttcgtcg
    17341 ccttttttgt attcacgaac tgcttcttcg cctgcaacgt tccaggagat gtcagacagg
    17401 tgaaccaggc cgtcgatgcc gccgtctagg ccgatgaaga taccgaagtc agtgatagac
    17461 ttgattttac cttcaacacg gtcgcccttg ttgtgggttt ccgcgaactg ctgccacggg
    17521 ttagctttgc actgtttcag acccagggag atacgacgac gttcttcgtc gatatccaga
    17581 accataactt ccactacatc tccaacgtta acaactttgg acgggtggat gtttttgttg
    17641 gtccaatcca tttcggaaac gtgtaccagg ccttcaacgc cttcttcgat ttcaacgaag
    17701 cagccgtagt cggtcaggtt ggtcacgcga ccagtcagtt tggtaccttc cggataacgt
    17761 ttagcgatag ctacccacgg atcttcgccc aactgtttca ggcccaggga tacacgggta
    17821 cgttcgcggt cgaacttcag cactttaaca gtgatttcgt cgcccacgtt gacgatttcg
    17881 ctcggatgct taacgcgttt ccaggccatg tcagtgatgt gcagcaggcc gtcaacgccg
    17941 cccagatcaa cgaatgcacc gtagtcagtg aggttcttaa cgataccttt aacttccatg
    18001 ccttcctgca ggttttccag cagctgatcg cgctctgcgc tgttttcgga ttcgataacg
    18061 gcacgacgag aaacaacaac gttgttgcgc ttctgatcca gcttgattac tttaaattca
    18121 agctctttgc cttccaggtg cagagtgtca cgcaccggac gaacgtctac cagagaacct
    18181 ggcaggaacg cacgaatacc gttcagctca acagtgaagc cgcccttaac tttgccgttg
    18241 ataacaccgg taacagtttc agcatcttcg taagcttttt ccagcgtgat ccaggcttcg
    18301 tgacgtttag ctttctcacg ggacagcaga gtttcaccga agccgtcttc tactgcgtcc
    18361 agagcaacgt caacttcgtc acctacctgg atttccagct cgccctgggc gtttttgaac
    18421 tgctcagccg ggatggcgga ctcagatttc agaccagcgt caaccagtac tacgtctttg
    18481 tcgatagcaa caacaacgcc acgaacgata gaacccgggc gggtttcgat ttcttttaag
    18541 gactcttcaa agagttgagc aaaagattca gtcatgttta atcttcaggt ttatatttaa
    18601 cgtccacctg gctccatgcc ggatggggtt gtttaacata cccgctgtca ttccattgca
    18661 acgggggtac tgcaaattcg gtcgcttatg cgagagccaa tttctggcgc gcgtattgta
    18721 gcgctttttc aatcacttgc tcaatgctta aggtggtgga atccaacact aaagcatcgg
    18781 ctgccggaac cagtggcgct accgctcggt tacgatcgcg gtcgtcgcgt tctttgatct
    18841 cggccaaaag gcgctcaaag ttaacactaa agcccttctc ctgcaactgt agcatgcggc
    18901 gatgcgcacg ttcttccgag gaggcgtcaa ggaaaatttt cactggtgca tcagggaata
    18961 ccaccgttcc catgtcgcgg ccatcggcaa tcagacctgg taattcgcga aacgcgcgtt
    19021 ggcgacgcaa taatgcttca cgaacgcgtg ggaatgtcgc gacttgtgaa gccgcattcg
    19081 ccacttcctg agtacgaatt tcgccgctga catcttcccc ttcgaggatc acttccagat
    19141 tgccattggt tgacacaaaa cgtacatcca gatgggatgc cagcggtacc agcgcatctt
    19201 ctgacgcaac atcaacatgg tgatgtaatg ccgccaatgc cagtacgcga taaattgcac
    19261 ccgaatccag cagatgccat tgcaatgctt ccgccatagc cttacacaag gtgcctttcc
    19321 ctgcaccgct tgggccatca atggtaataa ccggggcaat tgccgtcatc tttatctcct
    19381 taaaacaggc gtaccgttaa cataaccgcg cgcattatac gcgccgacgc cacaaatcgt
    19441 taacgttgtg tgcaaaaacc agttttgtct gtattcagat ggggatttat tgcgcaatta
    19501 tagcgggctg gcagaagacc agcccgaaag atgacaatga tttacttacc agaggcgata
    19561 cgatcacgga tgtgttgcgc acgctctgtt gatggtgggt gagagtcaaa catggactgg
    19621 gtgcgaccgc catccagact agccagtttt tcaaagctgc caaccagccc ctaggtgctg
    19681 atgccacgtt tcttcaacag atcaaaggag aaatcatctg cttcggactc tttatcacgg
    19741 gagtatttag cattaatagc gccttctgcg atatcaccca attgtgagcg ggaaagctgg
    19801 gaagccacac cgctggtagc tgaaatggca tcgcgtgcgg caacgatcgc ataagaaact
    19861 ttcatttcag ccagcgagtg acccaacgcg acgtggccca gttcatggcc cagaacacct
    19921 tcaatttcgt tgtcattcat catgtccatc aggccactgt agacacggac acagccgttc
    19981 gccatcgccc atgcgttgac gtcgctggtc atataaacct atagttgacc ggcgtgccat
    20041 taatattgtt acccaatgct ttggcgattt ttgccagacg tttaccgtac ttgctggatt
    20101 tacttgcgac ttgattgccg ctgtccattt cggcacagcc ctgattggca atcgcttttg
    20161 catcggcatc gcttaatgtt gctgctttat aggcatttaa accggagctg atagccatat
    20221 tggtatcaat accgtgggta ttttgacacc ctgtcagtaa tgctgcagag gtcgcaatcg
    20281 ccagcagtaa tttagtattc ttcatgtgaa tcatccgttg attaatcata tataaacatt
    20341 atgtatcaac aacttacatt gacaagcgac gctaccatta atcaaaatga ctcacaaggt
    20401 ccgaaaaaaa acgccgac
//
LOCUS       DAJVUY010000069        20414 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.069, whole genome shotgun sequence.
ACCESSION   DAJVUY010000069 DAJVUY010000000
VERSION     DAJVUY010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20414
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.069"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            127..942
                     /gene="mepH"
                     /locus_tag="OQQ72_002213"
     CDS             127..942
                     /gene="mepH"
                     /locus_tag="OQQ72_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-endopeptidase MepH"
                     /protein_id="HCS2011928.1"
                     /translation="MAQINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA
                     DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA
                     SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG
                     SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG
                     RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR"
     gene            1070..1651
                     /gene="sodB"
                     /locus_tag="OQQ72_002214"
     CDS             1070..1651
                     /gene="sodB"
                     /locus_tag="OQQ72_002214"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HCS2011929.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(1797..2978)
                     /locus_tag="OQQ72_002215"
     CDS             complement(1797..2978)
                     /locus_tag="OQQ72_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2011930.1"
                     /translation="MKINYPLLALALALAIGAFGIGTTEFSPMGLLPVIARGVDVSIP
                     AAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLML
                     SRILTSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETI
                     GWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGA
                     GAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGF
                     LLLLMVIMLAIPFLARNEFGAAISMVVWGAAAFAVVPPLQMRVMRVASEAPGLSSSVN
                     IGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVAN
                     S"
     gene            complement(3144..3233)
                     /gene="ynhF"
                     /locus_tag="OQQ72_002216"
     CDS             complement(3144..3233)
                     /gene="ynhF"
                     /locus_tag="OQQ72_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HCS2011931.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            3532..4557
                     /gene="purR"
                     /locus_tag="OQQ72_002217"
     CDS             3532..4557
                     /gene="purR"
                     /locus_tag="OQQ72_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HCS2011932.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(4554..5486)
                     /locus_tag="OQQ72_002218"
     CDS             complement(4554..5486)
                     /locus_tag="OQQ72_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2011933.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            5599..6810
                     /locus_tag="OQQ72_002219"
     CDS             5599..6810
                     /locus_tag="OQQ72_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS2011934.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            7101..8249
                     /gene="cfa"
                     /locus_tag="OQQ72_002220"
     CDS             7101..8249
                     /gene="cfa"
                     /locus_tag="OQQ72_002220"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HCS2011935.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(8289..8930)
                     /gene="ribE"
                     /locus_tag="OQQ72_002221"
     CDS             complement(8289..8930)
                     /gene="ribE"
                     /locus_tag="OQQ72_002221"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCS2011936.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            9145..10518
                     /gene="mdtK"
                     /locus_tag="OQQ72_002222"
     CDS             9145..10518
                     /gene="mdtK"
                     /locus_tag="OQQ72_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HCS2011937.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(10559..11815)
                     /locus_tag="OQQ72_002223"
     CDS             complement(10559..11815)
                     /locus_tag="OQQ72_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
                     /protein_id="HCS2011938.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            12123..12199
                     /locus_tag="OQQ72_002224"
     tRNA            12123..12199
                     /locus_tag="OQQ72_002224"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12157..12159,aa:Val,seq:gac)
     gene            12204..12280
                     /locus_tag="OQQ72_002225"
     tRNA            12204..12280
                     /locus_tag="OQQ72_002225"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12238..12240,aa:Val,seq:gac)
     gene            12388..12693
                     /locus_tag="OQQ72_002226"
     CDS             12388..12693
                     /locus_tag="OQQ72_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HCS2011939.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            12819..14423
                     /locus_tag="OQQ72_002227"
     CDS             12819..14423
                     /locus_tag="OQQ72_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
                     /protein_id="HCS2011940.1"
                     /translation="MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPY
                     SDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILL
                     GEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI
                     ATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI
                     EDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKG
                     EEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFVQAWFAERKQRDPFDWAEKNL
                     QEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPS
                     ESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKV
                     KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTA
                     CAEIGEAMARAVVKPASRARRRLSFD"
     gene            complement(14435..15247)
                     /locus_tag="OQQ72_002228"
     CDS             complement(14435..15247)
                     /locus_tag="OQQ72_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011941.1"
                     /translation="MIITRADLREWRIGAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGSGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(15251..16036)
                     /locus_tag="OQQ72_002229"
     CDS             complement(15251..16036)
                     /locus_tag="OQQ72_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HCS2011942.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            complement(16033..16701)
                     /locus_tag="OQQ72_002230"
     CDS             complement(16033..16701)
                     /locus_tag="OQQ72_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HCS2011943.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            complement(16765..17403)
                     /locus_tag="OQQ72_002231"
     CDS             complement(16765..17403)
                     /locus_tag="OQQ72_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HCS2011944.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            complement(17416..19518)
                     /locus_tag="OQQ72_002232"
     CDS             complement(17416..19518)
                     /locus_tag="OQQ72_002232"
                     /EC_number="1.2.7.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HCS2011945.1"
                     /translation="MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDE
                     VPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQ
                     MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV
                     AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR
                     LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPP
                     GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN
                     TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS
                     KGVFKCVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN
                     LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL
                     KLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTV
                     SPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRN
                     EHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQR
                     LGLEDIAADLAAHNLLPV"
     gene            complement(19488..20165)
                     /locus_tag="OQQ72_002233"
     CDS             complement(19488..20165)
                     /locus_tag="OQQ72_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001070231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like protein"
                     /protein_id="HCS2011946.1"
                     /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE
                     DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG
                     DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRGIGCS
                     ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITVRILQRKKSWL
                     TVGQVIY"
BASE COUNT         5111 a         5316 c         4766 g         5221 t
ORIGIN      
        1 tcgccaacga aacgtatttt ttaacaataa aagctattaa ctttctcttc ttctatgcat
       61 tagaatcatc aagttttgta aatcagacgc aggcatgata gacctgcctt aacagaggga
      121 cgctcagtgg cgcagataaa ccgtatttcg atcacgctct gtgctttact ttttaccacc
      181 ctgcctttaa cgcctatggc ccatgcttca aagcaagcca gggagagttc tgctaccact
      241 catatcacca aaaaagcaga taaaaagaaa agcacggcaa ccaccaaaaa gacccagaaa
      301 acagcgaaaa aagccgccag taaaagtacg accaaaagca aaaccgcttc ttccgttaaa
      361 aaatcttcca ttaccgcttc taaaaacgcc aaaactcgca gcaaacacgc cgtcaataaa
      421 acggcctcag ccagctttac cgaaaagtgt accaaacgta agggctataa atcgcattgt
      481 gtgaaagtca aaaatgccgc gtcaggaact cttgccgacg cgcacaaagc gaaggtgcaa
      541 aaagctacga aagtggcaat gaataaactg atgcagcaaa ttggtaagcc atatcgttgg
      601 ggtggcagct caccgcgtac cggttttgat tgcagcggcc tggtttatta cgcttataaa
      661 gatttggtga aaattcgtat tccgcgtacg gcgaatgaaa tgtatcacct gcgtgatgca
      721 gcgccaatcg aacgtagtga actgaaaaac ggcgacctgg tctttttccg tactcaggga
      781 cgcggcacag ccgatcatgt cggcgtgtat gtcggcaacg gcaaatttat tcagtcaccg
      841 cgcacaggtc aggaaattca aatcacttct ctcagtgaag actactggca gcgccactat
      901 gttggcgctc gtcgggtaat gaccccaaaa acacttcgct aaaactttac cctgttgtta
      961 cggcaacagg gtaagttcat cttttgtctc accttttaat ttgctaccct atccatacgc
     1021 acaataaggc tattgtacgt atgcaaatta ataataaagg agagtagcaa tgtcattcga
     1081 attacctgca ctaccatatg ctaaagatgc tctggcaccg cacatttctg cggaaactat
     1141 cgagtatcac tacggcaagc atcatcagac ttatgtcact aacctgaaca acctgattaa
     1201 aggtaccgcg tttgaaggta aatcactgga agagattatt cgcagctctg aaggtggcgt
     1261 attcaacaac gcagctcagg tctggaacca tactttctac tggaactgcc tggcaccgaa
     1321 cgccggtggc gaaccgactg gaaaagtcgc tgaagctatc gccgcatctt ttggcagctt
     1381 tgccgatttc aaagcgcagt ttactgatgc agcgatcaaa aactttggtt ctggctggac
     1441 ctggctggtg aaaaacagcg atggcaaact ggctatcgtt tcaacctcta acgcgggtac
     1501 tccgctgacc accgatgcga ctccgctgct gaccgttgat gtctgggaac acgcttatta
     1561 catcgactat cgcaatgcac gtcctggcta tctggagcac ttctgggcgc tggtgaactg
     1621 ggaattcgta gcgaaaaatc tcgctgcata ataactgatg gcaaatgcag cattgcctga
     1681 tgcgcttcgt ttaccatgcc aacgcggatg aggcgttaac agcgcattcg gcaagataaa
     1741 tcgcacgttg tcagcaactg taacgcagaa ggttatcctt ctgcgttttt gtttaattag
     1801 ctgttagcaa cgcaaactgt ttcaggttgt tttctggctg acataaacac cagcaataat
     1861 gccagtcccg cgacaatcgc tcccatcacc ggcacaaagc tgtatcccag cccagcggaa
     1921 attaccgcac caccagcagc tgctcccagc gcatttccaa gattaaaggc accaatattg
     1981 actgatgaag acagacctgg cgcttcactg gcgacacgca tcacgcgcat ctgtaacggc
     2041 ggtacgaccg caaaggctgc tgcgccccac accaccatgc taatagctgc gccgaactca
     2101 ttgcgggcca ggaacgggat tgccagcata atcaccatca acaacaacaa aaagcctttc
     2161 aacgtgccgt taactgaacg atctgccagt ttgccgccgg gatagttacc gatagagaat
     2221 ccgacaccaa tcagcaccag cattgccgta acgaacaccg gtgttgcgtg ggtaatactt
     2281 tgcagtaccg gagagatata ggtgtagaga gtaaacattg caccagctcc cagtaccgtc
     2341 gtcagcaatg cagacaacac ctgcggacgc attaataccg ccagctcttt tttcacttca
     2401 ggtcgtgccc ctgcaccacc tttaggtaat gagaagaaca gacttaccat tgaaatcact
     2461 cccagccccg ccgttgccag aaatgacatc cgccagccga tggtttcacc caaccaggtc
     2521 gccgccggca cgccaccgat atttgccagg gttaacccca taaacatagt ggcaactgcg
     2581 ctggcctgtt tatgttttgg ctccacgctt gcggccacga ctgaacccaa accaaaaaat
     2641 gctccgtgat tcaggctggt caaaatgcgt gaaagcatca gggtcatata atccggcgcg
     2701 atggcggaaa gtacgttgcc gagcgtgaaa attgccatca ggaaaatcaa cgcactgcgg
     2761 cgggcacgat gagaaagtag aagcgtcatc agcggcgcgc caaccattac gccaactgca
     2821 taggcactga ttaacattcc ggcagcggga atcgagacat ccacaccgcg cgcaatgacg
     2881 ggcaacaagc ccattggcga gaactccgtt gtcccgatac caaacgcgcc aatcgccagc
     2941 gccagcgcca gcgccagcaa cggatagtta attttcatgc cttatctcca cctcttcgcg
     3001 tcattacgcg atattcatta aagtggcgaa agcatgacag caatcacaaa aaaatgaaaa
     3061 taacaaaaag agaaaacact tttgccattt tgctaacaaa caggaaggag atgcgaggga
     3121 gaacgcgctc cctcgagagg aaatcagtgc agcgcggcag tcaaacccac ggccacgatc
     3181 aaaccgagga cgataatcgt tgttaccagt gaaaatttaa ggtcggtgct catcaagttt
     3241 tctccttttt tattaccaca caaatagtga tattacgcat ttttacacac tgtgatgaaa
     3301 aaatctcccg tcatttataa tgataagtgt ttttaccact tccccttttc gtcaagatcg
     3361 gccaaaattc cacgcttaca ctatttgcgt actggccatt gaccccttcc tgacgctccg
     3421 tgtcgttttt ccggcgtacc gcaacacttt tgttgtgcgt aaggtgtgta aaggcaaacg
     3481 tttaccttgc gattttgcag gagctgaagt tagggtctgg agtgaaatgg aatggcaaca
     3541 ataaaagatg tagcgaaacg agcaaacgtt tccactacaa ctgtgtcaca cgtaatcaac
     3601 aaaacacgtt tcgtcgctga agaaacgcgc aacgccgtgt gggcagcgat taaagaatta
     3661 cactactccc ctagcgcggt ggcgcgtagc ctgaaggtta accacaccaa gtctatcggt
     3721 ttgctggcga ccagcagcga agcggcctat tttgccgaga tcattgaagc ggttgaaaaa
     3781 aattgcttcc agaaaggtta caccctgatt ctgggtaatg cgtggaacaa tcttgagaaa
     3841 cagcgggctt atctgtcgat gatggcgcaa aaacgcgtcg atggtctgct ggtgatgtgt
     3901 tctgagtacc cagagccgtt gctggcgatg ctggaagagt atcgccatat cccaatggtg
     3961 gtgatggact ggggtgaagc aaaagctgac ttcaccgatg cggtcattga taacgcgttc
     4021 gaaggcggct acatggccgg gcgttatctg attgaacgcg gtcaccgcga aatcggcgtc
     4081 atccccggcc cgctggaacg taacaccggc gcaggccgcc ttgccggttt tatgaaggcg
     4141 atggaagaag cgatgatcaa ggtgccggaa agctggattg ttcagggtga ctttgaaccc
     4201 gaatctggtt atcgcgccat gcagcaaata ctgtcgcagc cgcatcgccc tactgccgtc
     4261 ttctgtggtg gcgatatcat ggcaatgggc gcactttgtg ctgctgatga aatgggtctg
     4321 cgcgtcccgc aggatgtttc gctgatcggt tatgataacg tgcgcaacgc ccgctatttt
     4381 acgccggcgc tgaccacgat ccaccagcca aaagattcgc tgggtgaaac agcgttcaac
     4441 atgctgttgg atcgtatcgt caacaaacgt gaagaaccgc agtccattga agtgcatccg
     4501 cgcttgattg aacgccgctc cgtggctgac ggcccgttcc gcgactatcg tcgttaatca
     4561 cccgttgcgg gagtctcttc cggctcccgc agccactcct tattcagcgt ctcactatcg
     4621 ccgagatact caagcagcca ggttaacgca ggcgacatat cattttgctg ccatgtcaga
     4681 caacatgccg aatccgggaa ggggttttcc aattcaagtg ctacccactt cccctcatta
     4741 agccacggtt tggcgaaatg tgttggcacc atccctatgc ataatcctgc cgagatacag
     4801 gttgccgatg attcccagtc aggcacgaca actctttttt ggttatccag taaccaggta
     4861 atacgtttag gtagcgttcg cgaggtgtct tcgcgcacca acgacggcca gttgcgcaac
     4921 gtatcatcgc tgaatgggcc atccatcaac gccagcgggt ggtggctggc aacaacgcaa
     4981 ctccagctta gcatccccat atcccggaag gcataacgac cgcctaccgg aatcgcgcgt
     5041 gttgcgccaa tcgccagttc cacgcgcccg tcggaaagcg catcccagac accgttgaac
     5101 acttcctgaa agacaagaag ttcgacatca tcaaaatggc gataaaaatc aacgatcatc
     5161 tgccgtgtac gttctggcct gacaatatta tccactgcga tagctaactg accgcgccag
     5221 ccgttcgcta tctgctgaca ttgctggcgg gtgatctgca tttttttgac aacagagcgc
     5281 ccttctttga gaaaccacgc tccagcagcg gtcagctcca catcacggtg ccgtcgttca
     5341 aagagcggca ccgccagcca ctcttccagc tgacgcacgg tatagctgac cgcagaagga
     5401 acgcgatgca gctcctgtgc cgcagcgcta aaactaccat tacgcgctac cgcatcaaca
     5461 acttcgagtg aatattctga ccacatagtc tgcctgcaaa atttttgaaa tcagtcatca
     5521 aatattaccg tttcacaaca ctaatttcac tccctacact ttgcggcggt gtttaattga
     5581 gagatttaga gaatatacat gcaacctggg aaaagatttt tagtctggct ggcgggtttg
     5641 agcgtactcg gttttctggc aaccgatatg tatctgcctg ctttcgccgc catacaggcc
     5701 gacctgcaaa cgcctgcgtc tgctgtcagt gccagcctta gtctgttcct tgccggtttt
     5761 gccgcagccc agcttctgtg ggggccactc tccgaccgtt atggtcgtaa accggtgtta
     5821 ttaatcggcc tgacaatttt tgcgttaggt agtctgggga tgctgtgggt agaaaacgcc
     5881 gctacgctgc tggtattgcg ttttgtacag gctgtgggtg tctgcgccgc ggcggttatc
     5941 tggcaagcgt tagtgacgga ttattatcct tcacagaaag ttaaccgaat ttttgcgacc
     6001 atcatgccgc tggtgggtct atctccggcc ctggctcctc tgttaggaag ctggctgctg
     6061 gtccattttt cctggcaggc gattttcgcc accctgtttg ccattaccgt ggtgctgatt
     6121 ctgcctattt tctggctcaa acccacgacg aaggccggta acaatagtca ggatggtctg
     6181 acctttaccg acctgctacg ttctaaaacc tatcgcggca acgtgctgat atacgcggcc
     6241 tgttcagcca gtttttttgc atggctgacc ggttcaccgt tcatccttag tgaaatgggc
     6301 tacagcccgg cagttattgg tttaagttat gtcccgcaaa ctatcgcgtt tctgattggt
     6361 ggttatggct gtcgcgccgc gctgcagaaa tggcaaggca agcagttatt accgtggttg
     6421 ctggtgctgt ttgctgtcag cgtcattgcg acctgggctg cgggcttcat tagccatgtg
     6481 tcgctggtcg aaatcctgat cccattctgt gtgatggcga ttgccaatgg cgcgatctac
     6541 cctattgttg tcgcccaggc gctgcgtccc ttcccacacg caactggtcg cgccgcagcg
     6601 ttgcagaaca ctctacaact gggtctgtgc ttcctcgcaa gtctggtagt ttcctggctt
     6661 attagtatca gcacgccatt gctcaccacc accagcgtga tgttatcaac agtagtgctg
     6721 gtcgcgctgg gttacatgat gcaacgttgt gaagaagctg gctgccagaa tcatggcaat
     6781 gccgaagtcg ctcatagcga atcacactga tctatatcga tatacttata cttaggctgc
     6841 taacaaaatt ttgttgtatg attgaaatta gcggcctata ctaatttcga gttgttaaag
     6901 ctacgataaa tattatgttt ttacggggac aggatcgttc ccgactcact atggatggtc
     6961 atttcggcaa gggttcctcc tttccctctg ttctacgtcg gattatagac tcgcggtttt
     7021 ttctgcgaga tttctcacaa agcccaaaaa gcgtctacgc tgttttaagg ttctgatcac
     7081 cgaccagtga tggagaaact atgagttcat cgtgtataga agaagtcagc gtaccggatg
     7141 acaactggta ccgtatcgcc aacgaattac ttagccgtgc cggtatagcc attaacggtt
     7201 ctgccccggc ggatattcgt gtgaaaaacc ccgatttttt taaacgcgtt ctgcaagaag
     7261 gctctttggg gttaggcgaa agttatatgg atggctggtg ggaatgtgac cgactggata
     7321 tgttttttag caaagtctta cgcgcaggtc tcgagaacca actcccccat catttcaaag
     7381 acacgctgcg tattgccggc gctcgtctct tcaatctgca gagtaaaaaa cgtgcctgga
     7441 tagtcggcaa agagcattac gatttgggta atgacttgtt cagccgcatg cttgatccct
     7501 tcatgcaata ttcctgcgct tactggaaag atgccgataa tctggaatct gcccagcagg
     7561 cgaagctcaa aatgatttgt gaaaaattgc agttaaaacc agggatgcgc gtactggata
     7621 ttggctgcgg ctggggcgga ctggcacact acatggcatc taattatgac gtaagcatgg
     7681 tgggcgtcac catttctgcc gaacagcaaa aaatggctca ggaacgctgt gaaggcctgg
     7741 atgtcaccat tttgctgcaa gattatcgtg acctgaacga ccagtttgat cgtattgttt
     7801 ctgtggggat gttcgagcac gtcggaccga aaaattacga tacctatttt gcggtggtgg
     7861 atcgtaattt gaaaccggaa ggcatattcc tgctccatac tatcggttcg aaaaaaaccg
     7921 atctgaatgt tgatccctgg attaataaat atatttttcc gaacggttgc ctgccctctg
     7981 tacgccagat tgctcagtcc agcgaacccc actttgtgat ggaagactgg cataacttcg
     8041 gtgctgatta cgatactacg ttgatggcgt ggtatgaacg attcctcgcc gcatggccag
     8101 aaattgcgga taactacagt gaacgcttta aacggatgtt tacctattat ctgaatgcct
     8161 gcgcaggtgc tttccgcgcc cgtgatattc agctctggca ggtcgtgttc tcacgcggtg
     8221 ttgaaaacgg ccttcgagtc gctcgctaaa ggctattcta tcgccccctc tccgggggcg
     8281 atttcagatc aggcttctgt acctggttga ttcatggcat tttctcgtgc cgccagcaca
     8341 cgttctaccg tatctaccac tgcctgagtt tgtggatcaa tttcaatgtt gacgcgtgcg
     8401 ccgagttttt tcttcccaag agtcgtgcgt tccagagttt ccggaattaa atggacgcaa
     8461 aaacgcgttg gcgtgacttc gccgacggtc aggctaatac cgtcgatgcc aataaatcct
     8521 ttgtacagga tatatttcat caactgacta tcctggactt taaaccagat ctggcgatta
     8581 ttttccgagg ttaatatttt cgccacttca gcggtggtca taatatgacc tgacattaag
     8641 tgtccgccaa tttcatcact gaatttcgcc gcacgctcaa cgtttaccca atcccccact
     8701 tttaaatcgc caagattggt aatgcgtaac gtttctttca tcaggtcaaa actgacatgg
     8761 ttgccgttaa tttccgtcac ggtcaggcag caaccgttat gcgccacgga agcaccggtt
     8821 tccaggccgt ccagcatgtg gtcgggtaac tccaccacat gcgtacgaaa atttggtttc
     8881 tcgtcaatcg acaccagttt tgcggtgccc tgtacaatcc ccgtaaacat acttacaact
     8941 cctgaaatca gttaagacat tctgttcagc acaatagcag gtggcaaacg cccttaccag
     9001 tgaaggggta agaatgacta ttttttcact ggagaattaa taaatcctcg ctacaataga
     9061 ctgaatttcc cctgcttctt ctttttgctg cccattcagg cggcttttta gtctctcata
     9121 taactacaaa taaaaggtgt tcacgtgcag aagtatatca gtgaagcgcg tctgttatta
     9181 gcattagcaa tcccggtgat tctcgcgcaa atcgcccaaa ctgcgatggg ttttgtcgat
     9241 accgtgatgg cgggcggcta tagtgccacc gacatggcgg cggtcgctat cggtacttct
     9301 atctggcttc cggcgatcct ctttggtcac ggactgctgc tggcattaac gccggttatc
     9361 gcgcaattaa atggttccgg tcgacgtgag cgcattgcgc atcaggtgcg acaaggtttc
     9421 tggctggcag gttttgtttc cgttctcatt atgctggtgc tgtggaatgc aggttacatt
     9481 atccgctcca tggaaaacat cgatccggct ctggcggaca aagccgtggg ttatctgcgt
     9541 gcgttgttgt ggggcgcgcc gggctatctg ttcttccagg ttgcccgtaa ccaatgtgaa
     9601 ggtctggcaa aaaccaagcc gggtatggta atgggcttta tcggcctgct ggtgaacatt
     9661 ccggtgaact atatctttat ttatggtcat ttcggtatgc ctgagctcgg tggcgttggt
     9721 tgtggcgtgg ctactgcggc ggtgtattgg gtcatgttcc ttgccatggt ttcttacatt
     9781 aaacgcgccc gctccatgcg cgatattcgt aacgaaaaag gcaccgcgaa acccgatcct
     9841 gcggttatga aacgactgat tcaactcggt ttaccgattg cgctggcact attctttgaa
     9901 gtgacactgt ttgccgtcgt ggctctgtta gtgtctccgc tcggtattgt tgatgtcgca
     9961 ggacaccaga ttgccctgaa ctttagttca ctgatgtttg tgcttccaat gtcgctggcg
    10021 gcagcggtaa ctatccgcgt aggttatcgt ctgggtcagg gctcaacgct ggatgcgcaa
    10081 accgctgcgc ggaccgggct tatggtgggt gtctgtatgg caaccctgac ggccattttc
    10141 acggtttcac tccgggagca aatcgccctg ttgtacaacg acaatcccga ggttgtaacg
    10201 ctggctgcgc atttgatgtt gctggcggcg gtatatcaga tttctgactc aatccaggtg
    10261 attggcagtg ggattttgcg tggttataaa gatacgcgtt ccattttcta tatcaccttt
    10321 acagcttact gggtgctggg cttgccaagc ggctatattc tggcactgac cgatctggtc
    10381 gttgaaccta tggggccagc aggcttctgg ataggcttta ttatcggcct gacatcggca
    10441 gccattatga tgatgttgcg tatgcggttc ctgcaacgtc tgccgtcagt tatcattctg
    10501 caacgagcat cccgctaata aagacaaggc gcaaccttca cgggttgcgc ctgtgttttt
    10561 acgcaggctg gagcgttgcg ccaatcccgt cttcgtctgg ctgtaatttc agagcgttgc
    10621 acagagtttg ccgactggca tctgttatct caacgtgtat atcaccggta acttcccctt
    10681 tcacattgat gaagtcaggt gagatttctt tcgcactggt ttgcaggcaa atcgctccct
    10741 ctccgcgcag gcgtttcact ttcagttgca catgcgttgc cgcaccagtg atcagccaca
    10801 gttttccgcc attcagattg atgttaccaa caataaaagt gacaccgtca ccttttaccg
    10861 tactgccgtc gagaatcaac acaccgccct gctgtacagt aatcgttgat tgttgcagat
    10921 ctgcgccata gccaataatc attgaagcgc cgtccagtaa tgcaacactc ccggtcagtt
    10981 caaccggtgc gcgatcttcc tctacgacaa aattttcgtc cgcgctggtg ggtgacaaca
    11041 ggatcactgt tccaccttgt attaccgcat tttccagcgt accggcatgc acttcagccc
    11101 gaccacccac attcacggac aggttttgcg tcttaccgga actgtagagc tgaaggccat
    11161 ccgtccccag acgataaatg gatccattct caacaatggt gtcagagtct tcaccaccga
    11221 gattattcat ggtgccacca gcaagcaacg tatcactggc tttcccggcc agcataaaaa
    11281 cgccgccctg attaatctca caattgctgg cttccccacc tggatacacc aacaattcac
    11341 caccttcatc taccacgacc gctgaggttg tcccattaac caacaggccg ccctcttgat
    11401 cgagaatgat tttttccgcg cgatgtcctt ccagtacacg caggttaccg ccattttcca
    11461 gcaacaaacc gcaggcataa ccctgatcaa cgctgaattc accttcggga tggcggccat
    11521 taaccgtagc gagcgtagag agactaattg cgcctccctc ggactgaaca atatctgtgg
    11581 caatggcacc gtcgctgacc gatagcgtgc cattgttacc gtactgtgtg catttggcga
    11641 tcccaccggt tgccactttc aaccagccag cccccgtgac tacggtattt tcggctcttc
    11701 cgccagcttc aacaatcaac tcgccttcag taagttgcgt cgcgccaatg acctcgccgg
    11761 tcttaacaat ttgcacattc ccgtcgctca tcaagttttt cgcatcagat cccatgattt
    11821 attcctttgc tgcatctgtg tgcctttatt gctacctaaa tgtaaaggct acggaggatt
    11881 tatccacgac agatttgaga tggtggcaaa caactctgtt taaactctga tacacgaatt
    11941 attgggttgt atcagatgta aatgcgatcc tgaataaaaa tcgcccttgc aaatcaacaa
    12001 aatatagcca atttgcttaa aagctctgca aacggtcgaa atagcgcaga aaattacgtt
    12061 ttgcctcttg ccaccttccc actctgccgc taatattcgt ccccgttgtc acctacaacg
    12121 ttgcgttcat agctcagttg gttagagcac caccttgaca tggtgggggt cgttggttcg
    12181 agtccaattg aacgcaccat cctgcgtccg tagctcagtt ggttagagca ccaccttgac
    12241 atggtggggg tcggtggttc gagtccactc ggacgcacca gattttctta atctggtctt
    12301 ctcctttttc cctctgtttc ttctctgtat ccaatacgtt aaaagattta cactgtcttc
    12361 gtatgcgtta tcagaaggag aatcgctatg gcaactttgt tacaacttca ttttgctttt
    12421 aatggcccat ttggcgacgc aatggctgag cagcttaaac cgcttgctga gtcgattaat
    12481 caggaacctg gttttctgtg gaaggtatgg acagaaagtg aaaagaacca cgaagccggt
    12541 gggatctatc tttttactga tgaaaaaagc gcccttgcct atctggaaaa acatactgcc
    12601 cgacttaaaa atctcggcgt tgaggaagtt gtcgccaaag ttttcgatgt caatgagcca
    12661 ctgagtcaaa tcaatcaggc aaaactcgcc tgacagaatt taatcaaggg cggttagcgc
    12721 ccttttcatc cctgtctgaa atttctcaaa ttctaaaaat ctcaaccaaa cttatctgat
    12781 aacactaaat tcgaaagaat gcgtacaggt aagtaacaat gaaaaaaatt gctattgtgg
    12841 gtgccgggcc tacggggatc tacaccttat tctcgcttct acagcaacaa actccacttt
    12901 ctatttctat cttcgagcag gctgacgagg ccggtgtcgg gatgccatac agtgatgagg
    12961 aaaactcaaa aatgatgctg gcaaatattg ccagtattga aataccgccg attaattgta
    13021 cgtatctcga atggctacaa aagcaagaag ccagccatct ccagcgttat ggcgttaaaa
    13081 aagaaacctt gcacgatcgt cagtttttac cgcgaattct gctgggcgaa tatttccgcg
    13141 atcaattttt acgattagta gaccaggcac gacagcaaaa atttgcagtg gctgtttatg
    13201 aatcatgcca ggttaccgat ctgcaaatta caaatgctgg cgtcatgctc gctacaaatc
    13261 aggatttacc cagcgagacg tttgatttag cggtgattgc cacgggtcac gtctggcctg
    13321 atgaagaaga agcaaccaga acgtattttc ccagtccgtg gtcaggcctg atggaagcaa
    13381 aggtcgatgc gtgtaacgtg ggtattatgg gaacatcctt gagcggactg gatgcggcaa
    13441 tggcagtggc tattcagcat ggttcgttca ttgaagatga taaacaacac gtcgttttta
    13501 accgcgataa cgcaagtgaa aagctaaata ttacgttgat gtcgcgcacg ggtattttac
    13561 ccgaagccga tttctattgc cctattccct acgagccctt acacatcgtc accgatcagg
    13621 cattaaatgc tgagattcaa aaaggtgaag agggcctttt ggatcgggta tttagattga
    13681 tagtagagga aatcaagttt gctgatccag actggagcca acgcatagcc ttagagagcc
    13741 tgaatgtcga ttcctttgtt caagcctggt ttgccgagcg caaacaacgc gacccatttg
    13801 actgggcaga aaaaaatctc caggaagtcg aacgcaataa acgagaaaaa catactgttc
    13861 cctggcgtta tgtcattctg cgcctgcatg aagccgtaca ggaaattgtt ccacatctga
    13921 atgaacacga ccataaacgg ttcagtaaag gccttgcccg ggtttttatc gataattatg
    13981 cggcaatccc ttcagagtct attcgtcggc tgctggcctt acgtgaagcg gggatcattc
    14041 atattctcgc cctcggtgaa gactacgaaa tggaaattaa tgagtcgcgc accgtcctga
    14101 aaacggaaga caacagctac tcgtttgacg tttttattga tgcccgcgga cagcgtccgc
    14161 ttaaagtgaa agatattcct ttccctgggc tacgcgagca attacagaaa acaggggatg
    14221 aaatccctga tgttggcgaa gattatacgt tacagcaacc cgaagatatt cgtggacgcg
    14281 tagcgttcgg cgcgttgccc tggttgatgc acgaccagcc tttcgttcag ggacttacgg
    14341 catgtgcaga aattggtgag gcgatggctc gggcggtcgt aaaacctgca tcccgtgcac
    14401 gtcggcgtct ttcgtttgat taaaggtaaa gctatcagca ctcaacaaac tgatgctgtt
    14461 cattaagacg atagcggact ccggttcgaa tattgttttc accttcaatg gcgacggcga
    14521 agcgaactct ttcgccgtca tgatatgcca gtgcggcgct tccccctgac ccgagaataa
    14581 ttgagtcgac cacgcccgtg ctcactaccg ttgaattttc accgctggca atgatgtgta
    14641 cattgtcgcc gctgttggca attctggcgt ttgcgccaaa gctggcgatt tgcaccaggt
    14701 caccattact ggcgacatga caccgttcac ccaatgtaca aacgcgtact cgcattccgg
    14761 tattcgcaat ccgactacta tctccagcgc tgcttatccg cgaagaatta ccggttacag
    14821 caacccgtgc gcgttcaccg gagctgccaa tgtgactgtt aaagccgaca cttccaatcc
    14881 gcacgctata acccatactg gcaatttgcg cggcataccc agcgattgcg attcgggcgt
    14941 tatcctcaca acagccgatg cgagcatgat cgtcgctgcg ggcaaactga ctgcaaaatg
    15001 gtatctctcc ggggtctgtg gccagttttt gcatagagga aacttcctga tgcgcgaagt
    15061 tttcatccgc cagccatttt ttccacgcat actcaaccag actctccgcc cagtccgtat
    15121 atccttcctc aatcagtgca tgatgaatat cggcataact accgccgcgt cggaaatggc
    15181 gcaggaacca gcgatacatc accgctccga tacgccattc tcgcaggtct gctcgtgtaa
    15241 tgatcattcg ttagtgccgg tgatagccat cgaccatgct tttaaaggtt tcgtgtggcg
    15301 tacgccccgt ggtgcaaaga taaagatgtc cgaagataaa aaagaggctt ataaatgcca
    15361 gagcaaaatg cgcctgcaat aaccagtatc ttacgccagg aaacacatct cccacggctt
    15421 gcggatagag acacaacagc cccgtcaata gtaacaacgg cagcaatcca tacatgacac
    15481 caacataggc gacctgctgt aagggattaa atttagactg tgttgttgcc gggaaaggat
    15541 gttcttcccc ctgcataatg ccaaacaaat aaaatcgcgt ttgttttgcc gctcgttcca
    15601 gccacccctg acgacgaatg cgatagtggt gaccattatc cccaacggca ttgatcagca
    15661 caaagccgag ccagcatgcc agtaacaaaa atccgcaaac ttcatgcacc gcaaccagac
    15721 ttttaaccgc agttgcgccc accatcgcaa agtgatttat cagcccactt gccagcaaca
    15781 atacaaagag taacgcattc gaccagtgcc ataatctgac cgctttgctg taaagataaa
    15841 ccttctcacc atgatcggtg gctgatttct tcacgccacg agcacgaagc aaggcgtgca
    15901 gccccagcac caaccacatc ccaaccagca atactccggc aatgatcaac cacaccggcc
    15961 aaaattcggg agtgaactgt ggcacatagt tcgctaactg gctctgaaac tgttcagcat
    16021 gttgcgacgg gttcatacat tttccttttt aatcaaatgt tgaccgaacc ggcgatacag
    16081 atgcggtttc ccggcaccag gtagctgata ttgatagtat ttattatcct gcaaccacgc
    16141 ctgaatttct gggctatctt cgcgaccaaa gatcaatgcg tgttccggac aggcgctgac
    16201 gcaaatgggc ggaaagcctt ttgccagtcg ggactcagcg cagaaatcac atttatctgc
    16261 cactttagtg acagggttaa ggtagcgaac ctggtacgga caagcgccaa tgcaataact
    16321 gcagccgatg cactgcgatt tttctacccg cacgatcccc tgctcatcac gccacgatgc
    16381 ccccgtcggg caaacgtcga tgcacggagc atcttcgcag tgctgacatg actggcgaaa
    16441 aaagtgatac tgcgtttcgt tgtcgttatc ggtgactgga atgtgtgcta tcgataaacg
    16501 gcttccctga gcggggacgt ggttagtttt acggcatgcg cgggcgcaaa tattacagcc
    16561 attgcaccgt gactcgtcat gaatcatggc ataccgaact tccttttctt gcctcgtgtt
    16621 cgctaacaga gaagacgcag aaccagtaaa aaagattact gttcccatcc ccagaacaaa
    16681 tttgcgtcga gtgaaggaca tctgattatc ccctaatgca gtggctgcaa ctgtccaccc
    16741 tatccatgac atctccctga aatttcaggg gttctgaaac tgctctacct cgaaccattc
    16801 gcataagcca taagccttgc cataggtcat aaatcgctca ctaaacaagt acaactccgc
    16861 cgtcgatgac tccacctgcc gtatatcggc atattcaggt gcaacatcca tcgcggcgat
    16921 cgcggcttca atctgcgctt cctggaagta atatggcgct tgcatcagca tggcgacttt
    16981 gtaaggacga ggatatgtct ggcactcaaa acgaacggcg tgtgcaatgg cgcgacaaat
    17041 gtcctgctcc acaacttgca aagacatcgc cgcgtagttt tcactcatgg cctgcgttga
    17101 gtaatagtaa tcatcctggc ttcccgtcat acaagcgata tcagcgtagt ctccgttctg
    17161 cttaatgctt tccagcaaaa ctgacagctc ctcttctgca accgaatagg gtggcgagag
    17221 aaacacggcg cgcgccacca gctgcccagc cgcagaatgc tggcgaatga actctgccag
    17281 gatttcagcc ggttctggtt cggttaccgt atcaacgggg tgacgcatcc cctgtaacca
    17341 ttgccgcttc gcctcgtcaa cttcgctgac tttcgctaac ggcaattcat cccgatggtt
    17401 catctcaccc attccttaca caggcagtag attgtgtgct gccagatcgg cggcaatatc
    17461 ttccagcccc agacgctgca atgtttcgcg ggtgggacta ccaagctgtg ggtcccagcc
    17521 catttctttg tagaacatcg tgagcgaagc atgcatatcg tcacgatcca ttttgtcagt
    17581 accttcagta aagaccggga tctgcggatc cttgtcgaat acccaggaac agataagatc
    17641 gtgttcatta cgcatatctt tggtttgcat aagttttacc gtgtaggcac gatgcaacgt
    17701 aaagatacgc tctgcagcta aatctaattt ttcctgagtc atctcttcgc cggtgatcgc
    17761 tttgaagaat ttggcttcaa gcgccagatc gccccggtaa ttacggcttt tcagcggcga
    17821 aacggtcatt ggccagaccc agttacacag ggtgacggcg ttatgcaaac agacccgcaa
    17881 cagcgaccac ttagcatatt taatttttgc gtcattgatt ggcgtgtagt ttttggtttc
    17941 atcgtaggca tcttcagaac caaaaagctc tttcgccact tcacgttgca gtttcaatgg
    18001 caagccggaa ccaataaagt tgatatgggt atgtgtcatg cagtcacggt tgaacataca
    18061 gttaacaatg gaaccgacct gcgctgacgc ttcattggca tggtgaaccg gatagccaaa
    18121 cggcgaccag agtttatttt tcgcgtagcc ccagtactct tcacccaaat tccagcgttc
    18181 tgcgatggca tatgaaccat cagccaggtg actcagctca cccacacgat gcgccagacg
    18241 gtagtaaaaa tctttaatga aattaacgtc acccgcttcc agttgatccc agtgaatttc
    18301 cgcatactct tcagcaggca gaacacactt gaacacccct ttgctgtaac aataagtaaa
    18361 gtcgcgatgc aactgcccgt agttacacca taggccgtag tcatcgaaca aattcagacc
    18421 aaccaagtta ccaatcacac ggccatcgtc tttatcttca aaatctttcg gaccgttcgg
    18481 gaagatggtg gtatggacaa agttggctac acaagtgtta ccacctgtgc tgggcacgcc
    18541 aaactctttc acccgaggaa tattcatttg ggtcatacaa cggatcgggc aagagtggca
    18601 gccactcatt tttactgtgt atttctctgc cgccggacct aagtcaaaaa cggatttata
    18661 ggtacgaaag ccgaccgtgt tctgattgcc tggcggaatt tcccccgttt caatcggacc
    18721 accttcagcc gcgccccaaa acagcccttt acgtgctgtc caacgtgact tgggatctga
    18781 atactctgcc cacgattgcg gcgtacttgg cacgacatgg ttgttattcg caccaataag
    18841 ttcagtcatc atgtaatcgt tgagacgctt catctcctga cgatcggcaa tgttgacccc
    18901 tttcgtccct tcaaccgcaa tcgctttcag gtttttcgaa cccataattg cgccagttcc
    18961 cgcaccgccg ctgtggttac ggctattcaa catgccagag agaggaacaa ggttttcccc
    19021 agcctggcca atagccgcca cacaggtttc cggactggtc aatcgacaaa tttcttccgt
    19081 cgttgcgcgc gtcccttttc cccataagaa atcggctttt tccaggctaa ctttgtcatc
    19141 tttaatcttc agccataccg gtgatttcgc cttcccttcg ataataatga cgtcgtatcc
    19201 agcgaatttc atttgcgctg caaaaaagcc acccatatgg gcatcgacaa ctaaatttcc
    19261 tttggtaaaa gtagaaagtg aggtgatatt tacgcgagaa ctacaggggg caccagatcc
    19321 agttaatggg ccggtagcaa agactaattt attcgcttca tcgaaaggtt tcgtgcctgg
    19381 cggtacttcg tcatacataa ttttgtagcc gaagcccatg ccaccgacaa aacttttaaa
    19441 cttactggaa tcttcgaggg taatatttcc tgtcgtgaga ttgactctta atatattacc
    19501 tgtccaaccg ttagccatga ttttttcctt tgcaagattc tcacagtaat atctttccac
    19561 tcgataattt ttaacgcccc tgttgggcag gcgtttgcac attcaccgca taacacacat
    19621 ttcgaggatt ttttactttc ggtatttacg gtggccatca tccacgggca tgccgtagta
    19681 caggcgctac agccaatacc gcgtttatga tcgacggtaa tacagccttc tttctgctgc
    19741 caggtaatcg caccaatcgg gcagacgttc atgcattgcg gctctttgca ttgacggcag
    19801 gtgtccgcgg tatagttgag atcgccatac aggccgccgc cagagccaac cccgttgtcg
    19861 ccaaagaaat aattgcgatg gattttgata cgggagaaga atgtccctac tgagccatcg
    19921 ttgaagttgg tacaagagat ttcacagcgg tggcaacccg tgcatcgcgc tcgctgggtc
    19981 accagcaccc ctttgggtgt atttatcaac cctactgtgc cgctatcaat atcttcctgt
    20041 ttgcaaccca aaagtgacag taacgcaggg gcaattgtta gaccagcaag gccttttcct
    20101 gatatacgca agaattctaa tcgcgttaag ccaatatcta atagtggacg atcaaccggg
    20161 ttcatttatt tcgcatcctc ttcgcaaaca cagtgctgac aattcagcag cctgatatta
    20221 agcattcaat taatacgctg ctgactctgt ccccaacacc agatattttc cctaacccga
    20281 tagtgtatga gaaaagattt aacgccgata aactaatcct ttatggttag gagaaaaaat
    20341 aatgtgatta ttctgagccc ttaacattga tcgttatcaa ttaaaattac aaagcaagaa
    20401 attataagtg aact
//
LOCUS       DAJVUY010000070        20114 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.070, whole genome shotgun sequence.
ACCESSION   DAJVUY010000070 DAJVUY010000000
VERSION     DAJVUY010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20114
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.070"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1985
                     /locus_tag="OQQ72_002234"
     CDS             <1..1985
                     /locus_tag="OQQ72_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HCS2011947.1"
                     /translation="VGAFLAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDT
                     FNTEQVEVIKGPSGTDYGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVN
                     QVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHN
                     TPDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDI
                     NDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILT
                     NQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTR
                     NGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCP
                     AGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQS
                     GSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQY
                     GKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLW
                     SQYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLN
                     VYNLFDTDYVASINKSGYRYHPGKPRTFLLTANMHF"
     gene            2027..2704
                     /gene="ybiX"
                     /locus_tag="OQQ72_002235"
     CDS             2027..2704
                     /gene="ybiX"
                     /locus_tag="OQQ72_002235"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HCS2011948.1"
                     /translation="MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQ
                     QVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVR
                     SHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
                     TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNL
                     LREWSEI"
     gene            2778..3044
                     /gene="ybiI"
                     /locus_tag="OQQ72_002236"
                     /pseudo
     CDS             2778..3044
                     /gene="ybiI"
                     /locus_tag="OQQ72_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
     gene            3309..3569
                     /locus_tag="OQQ72_002237"
     CDS             3309..3569
                     /locus_tag="OQQ72_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS2011949.1"
                     /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG
                     ASTLDALEAKLTEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(3797..4882)
                     /gene="hcxB"
                     /locus_tag="OQQ72_002238"
     CDS             complement(3797..4882)
                     /gene="hcxB"
                     /locus_tag="OQQ72_002238"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcXB"
                     /protein_id="HCS2011950.1"
                     /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG
                     HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI
                     EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF
                     GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA
                     VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII
                     INPELFGAPDCSAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS
                     WQAICDAARQIGMSEETLQAFCQQLAS"
     gene            complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="OQQ72_002239"
     CDS             complement(5023..5985)
                     /gene="ybiB"
                     /locus_tag="OQQ72_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HCS2011951.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="OQQ72_002240"
     CDS             complement(6013..8163)
                     /gene="dinG"
                     /locus_tag="OQQ72_002240"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HCS2011952.1"
                     /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEVEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            8283..8765
                     /gene="ybiA"
                     /locus_tag="OQQ72_002241"
     CDS             8283..8765
                     /gene="ybiA"
                     /locus_tag="OQQ72_002241"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HCS2011953.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="OQQ72_002242"
     CDS             complement(8997..10361)
                     /gene="rhlE"
                     /locus_tag="OQQ72_002242"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HCS2011954.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            10590..11261
                     /gene="cecR"
                     /locus_tag="OQQ72_002243"
     CDS             10590..11261
                     /gene="cecR"
                     /locus_tag="OQQ72_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HCS2011955.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            11264..12259
                     /gene="hlyD"
                     /locus_tag="OQQ72_002244"
     CDS             11264..12259
                     /gene="hlyD"
                     /locus_tag="OQQ72_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308900.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HCS2011956.1"
                     /translation="MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTV
                     NLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLA
                     GYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
                     LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRA
                     VEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQI
                     GFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            12252..13988
                     /locus_tag="OQQ72_002245"
     CDS             12252..13988
                     /locus_tag="OQQ72_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2011957.1"
                     /translation="MNDAVITLNGLEKRFPGMGKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELASEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            13981..15114
                     /locus_tag="OQQ72_002246"
     CDS             13981..15114
                     /locus_tag="OQQ72_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011958.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            15125..16231
                     /locus_tag="OQQ72_002247"
     CDS             15125..16231
                     /locus_tag="OQQ72_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2011959.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIATNYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(16193..16603)
                     /locus_tag="OQQ72_002248"
     CDS             complement(16193..16603)
                     /locus_tag="OQQ72_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhQ family protein"
                     /protein_id="HCS2011960.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            16736..17487
                     /locus_tag="OQQ72_002249"
                     /pseudo
     CDS             16736..17487
                     /locus_tag="OQQ72_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
     gene            17484..18725
                     /gene="clsB"
                     /locus_tag="OQQ72_002250"
     CDS             17484..18725
                     /gene="clsB"
                     /locus_tag="OQQ72_002250"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HCS2011961.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIEPHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLEFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            18725..19681
                     /locus_tag="OQQ72_002251"
                     /pseudo
     CDS             18725..19681
                     /locus_tag="OQQ72_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
     gene            complement(19717..>20114)
                     /locus_tag="OQQ72_002252"
     CDS             complement(19717..>20114)
                     /locus_tag="OQQ72_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS2011962.1"
                     /translation="IIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVII
                     VNAALMSERPIWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALT
                     LYYYFIGFFGILAAIAITLVWQRHTRFFH"
BASE COUNT         4726 a         5446 c         5298 g         4644 t
ORIGIN      
        1 gcgtgggtgc gtttttggcg ggtgagaacg gtaactccac cactggcgac gccatttata
       61 tgcgtggtgc cgatacctct aacagtattt atattgatgg cattcgcgat atcggcagcg
      121 tctcgcgcga caccttcaat accgagcagg tcgaagtgat taaagggccg tccggcaccg
      181 actacgggca cagcgcaccg acgggctcga tcaatatgat cagcaaacag ccgcgcaatg
      241 attccggcat tgacgcctcc gccagtattg gcagcgcctg gttccgccgc ggcacgctgg
      301 acgtcaatca ggtcattggt gataccaccg cggtgcgcct gaatgtaatg ggcgaaaaaa
      361 cgcacgatgc cggacgcgac aaagtcaaaa atgagcgtta cggcgtcgcc ccttctgtcg
      421 cttttggcct tggtacagcg aatcgtttgt atcttaatta tctgcatgtc acccagcaca
      481 acacgccaga cggcggcatt ccgaccatcg gtttgccggg ctattctgcc ccatctgcgg
      541 gaacggcggc cctgaatcat tccggaaaag ttgatactca taacttttac ggcacggatt
      601 ccgattacga cgattcgacc accgacaccg ccaccatgcg ttttgagcac gacatcaacg
      661 ataacaccac cattcgcaat actacccgtt ggtcgcgcgt aaagcaggat tacctgatga
      721 cggcgattat gggcggggcg tcgaatatta ctcagcccac cagcgatgtg aatagctgga
      781 cctggtcacg cacggcgaat accaaagatg tgagtaataa aattctcacc aaccagacca
      841 acctgacctc gacgttctat accggttcta tcggtcatga tgtcagtacc ggcgtggaat
      901 ttacccgtga aacgcagact aactacggcg ttaatccggt gacgttaccc gcggtaaata
      961 tttatcatcc tgacagcagc attcatcccg gcggcctgac gcgcaacggc gcaaacgcca
     1021 atggtcagac ggataccttc gcaatttacg cctttgatac gctgcaaatc acccgtgatt
     1081 ttgagctgaa cggcgggatc cgtctggata attatcatac tgaatatgac agtgccaccg
     1141 cctgcggcgg cagcggacgc ggtgccatca cctgcccagc tggtgtggca aaaggttctc
     1201 cggtcaccac cgtcgacacc gccaagtcgg gcaatctggt gaactggaaa gccggggcgc
     1261 tgtatcacct gacggaaaac ggtaatgtct atattaacta tgccgtttcc cagcagcctc
     1321 cgggcggcaa caacttcgcc cttgcgcagt ctggcagcgg taacagtgcc aaccgcacag
     1381 attttaaacc gcaaaaagcc aacaccagcg agattggcac caaatggcag gttctggata
     1441 aacgcctgtt gctcaccgcc gcactgttcc gtactgatat cgaaaatgaa gttgagcaaa
     1501 atgatgacgg aacttactcg caatacggta agaaacgtgt cgaaggctat gagatatccg
     1561 tggccgggaa tatcactccc gcgtggcagg tgattggcgg ctatacccag caaaaagcaa
     1621 ccatcaaaaa cggcaaagat gttgcccagg atggttcctc atcgctgccg tataccccgg
     1681 agcacgcctt caccttatgg agccagtatc aggcaaccga tgatatctct gttggcgcgg
     1741 gcgcacgcta tatcggcagt atgcataaag gttcagacgg cgcggtggga acgccagcgt
     1801 ttaccgaagg ttactgggtc gccgatgcca aactggggta tcgggttaat cgcaatctcg
     1861 acttccagct aaacgtttac aacctgtttg ataccgatta cgtcgcctca atcaacaaga
     1921 gcggctaccg ttatcacccg ggcaagccaa gaaccttctt gctcacagcc aatatgcatt
     1981 tctgattcag atgtggggcg caggccccac tttttggaga aattgtatga tgtaccacat
     2041 tcccggcgtg ttatcgccac aggacgtcgc tcgttttcgc gaacaactgg aacaagccga
     2101 atgggtggat ggacgcgtca ccaccggcgc acaaggtgcg caagttaaga acaatcaaca
     2161 ggtagacacc cgcagcacgt tatacgccgc cctgcaaaat gaggtgctga acgcggttaa
     2221 ccaacatgct ttattctttg ccgcggcctt gccgcgtacc ctttccacgc cgctgtttaa
     2281 tcgctatcag aacaatgaaa cctatggttt tcatgtggat ggcgcagtac gcagccatcc
     2341 acaaaacggc tggatgcgca ctgacctttc tgccacgctg tttttaagcg atccacaaag
     2401 ctacgacggc ggcgaactgg tcgttaatga caccttcgga caacatcggg taaaactccc
     2461 ggcaggtgat ctcgtgttgt atccctccag cagcctgcat tgcgtgacac ccgtaacccg
     2521 cggcgtacga gtggcatcat ttatgtggat ccagtcgatg atccgcgatg ataaaaagcg
     2581 cgccatgctg tttgaactag acaaaaatat tcagtcgctg aaaagccgct atggtgaaaa
     2641 tgaagagatc ctgtcgctgc tcaatcttta tcataatctg ctgcgggaat ggtcggagat
     2701 ctgacgcttg aactgcccag gttcgtccct atattagcta cacttaactg tacaagcatt
     2761 gatatgggga ggacgatatg gcatccggtt gggctaacga tgacgccgtc aacgaacaga
     2821 tcaacagtac aattgaagat gcgattgccc gcgctcgggg tgaaattccg cgtggctaaa
     2881 gcctgtatga atgtgaagag tgcggtgccc ccatcccgca agcccgtcgg gaagccattc
     2941 ctggcgtgcg cttatgtatt cattgtcagc aggagaaaga tttacaaaaa ccagcgtata
     3001 caggatataa tcgcagaggt tcgaaagaca gccagttacg ttaactacaa ctggcgagat
     3061 gcatagcgag tataatttgt attttgcgtg gcattccgtg cctttaacgc tgctgtgact
     3121 gccacgcggc ataaaacaag tccataagta caacaaataa atggtttatc agtatgttag
     3181 atgtcaatca atttatttga acaaggcggt caattctctt cgattttatc tctcgaaaaa
     3241 aaacgtgata ctcatcacat cgacgaaaca acgtcactta tacaaaaatc acctgcgaga
     3301 gattaattat gaaaactatc aatactgttg ttgctgctat ggctctttca actctatcat
     3361 ttggcgtgtt cgcggcggaa ccggtaacgg catcccaggc acagaacatg aataaaatcg
     3421 gcgtggtttc tgccgatggc gcatccaccc tcgatgccct ggaagcgaaa ctgactgaga
     3481 aagccgcggc agccggtgcc agtggataca gcatcacttc tgccaccaac aacaataaat
     3541 taagcggtac tgcggtaatt tataagtaat tcgtaggacg gataaggcgt ttacgccgca
     3601 tccggcaaca gatgcctgat gcgacgctac cgcgtcttat caggcctaca aaatccgaac
     3661 cgttggacgg atcaggcggt tacgctacgt ccagcacaag tatttccctg tctgtttgcc
     3721 gacagacgca tatgctctaa ccctcattga tcctatatta cccttgtttg cccgtccgtt
     3781 actggacggg ctttttttag ctggctaact gctgacagaa agcctgcaac gtctcttccg
     3841 acataccaat ctgccgcgcc gcatcacaaa tggcctgcca gcttcccgca tccaatggaa
     3901 tcccctgctc ctgccgttcg cgacgcgtgt tcacttccca ctcgcccggt agcaaaatcg
     3961 gcttatcgtc atcatgcggc gaggctttca cccactcggc aaaggcttca gtctgcgcgc
     4021 tacaatccgg cgcgccgaac agttccgggt tgatgatgat agtggtcatg cagttaagaa
     4081 tggcatcggg actggtttgt aacgtttcct gatgcgtcgt tttaccgcca gaaagcgccc
     4141 cgccaagaat ttcacacatc gctgcaaggg cgtagccttt atgttcggca aaggtcaaca
     4201 gcgaccccaa cggcgactcc tgcattaccg ccggattggt cgtcggcacg ccgttaacgt
     4261 caatcaggca acctggcggc acggggacgc ctttatgcca ggcgacgcga gttttaccaa
     4321 atgcgatggc gctggtggcg taatcaagca acagcgggaa attatcttta cgagggaaaa
     4381 ccacacagaa cggattggtg ccaaagcggc tgtcgcgacc gtggaacggt gcgaccattg
     4441 gaataccgac cacgctaaca aagtggatag agacaaaccc cgccgctgca cactgctccg
     4501 cccagtaacc gatacggccg atatgatgcg agttatgtag cgccacggca gcaataccgt
     4561 gctgatgcgc tttctcaatc cccagcgcca tcgcttcgtg tgccgcgacc tgaccgaatg
     4621 cgcgatcgcc atcgagcgtg actgccgccc ccgcctcttt aacgattttg gcatgatggt
     4681 taatttgcag atgcccctga ctccaggaac gcacatagct tgggatcatg ccaataccat
     4741 gagaatcatg ccctgccagg tttgccgcga ttaaatgatc ggccactaat ttcgcttctt
     4801 gttcctcgct acccatctga cgaaatacag cctgaataaa actgtgcagc gtctgagcat
     4861 caaagcgatg accactttcc atggttaact cctgtttatg ttatgtgttt gttgtttttt
     4921 tatgctgcac gccgggcgcg ggaaggtcaa taaagatgca ggaatttcat attgcggtgg
     4981 ggtaaaagcc ggatgacatg gctcatccgg ctgagaaaag aattaaaatg cctgattaac
     5041 gcgcgccagg ccgtcgctga tagttgccgc ttcacccgta gcctccaggc agcaagccat
     5101 ctggattttc agcgattcgg gaatcggttc gctgccagca aggcaacgct caatccactg
     5161 cgccgtggtt tctgggtctt ttgcttgtgg cagtaactcg ctaccagcag tgtcctgttt
     5221 ttcatacagc acccgcatcc cttcacggtc aatgagattg atctgcgggc agcgctgcgg
     5281 attagcatac acttcgcctt cagtaccatg cattagtagc gcccgcccgc cgatatcgct
     5341 aaagaacttc gcgactcgcc cgatgtattc cggatgcgaa acgctggaaa gacgcagcgc
     5401 ctcaccttcg gcaaatggcg tcgccagttt cgccagggta tgtgcactgt tacgcacgcc
     5461 catccgccag cgcatcgcca gttgtttttc cagcggcggg caaaacgcgc cgacaggcat
     5521 aaacaccggt tgatgttcgt cgagcttcgc ctgcgcctgc ccgccgtgca acgttggtgt
     5581 aatacccatc agttcgaaaa tggtttctgt cagcacgcga gttggatctt cgctaacccc
     5641 gtgaaccacc acaggaaaac cgagtttgtg caggagaata gccaacaacg gcgtcaggtt
     5701 ggcctgttta cgcgcgccgt tgtaactggg gatgacaatc ggcatcggct tgcctgcagg
     5761 cggcgtcagc ttgatggtgt gattttgcat ggcttcgtaa aagccgagca tctctgcttc
     5821 cccttcccct ttgatacgta gcgcaatcaa tacgccgccc aactcaaggt cagggacttc
     5881 accattgagc atatgggcat acagaccgcg cgcagtatcc cggtctaaat cgcgcgcgtg
     5941 gtttttcccg cgcccgatct ctttaatgat tttgcgatag tccatttacg actccttacc
     6001 tgactcacat cattaacgcc gccgacggcg tggggatttc gttttttctt tctttttaac
     6061 tataccttca gggacttccg gttgctctat cggaaatacc ggtaatgcat ccagtagtcg
     6121 cttgccataa tttttggtca gcaagcgttt gtcgtagata accacttcgc cccagcaacc
     6181 gtggcttcga atcagtcgcc caacctgctg aatcaggtta aacgaggcgc tcggcaggct
     6241 ttgcacctca aacggatagc ggttgaggct tttcagccat tccccttcgg tgatcaccac
     6301 cgggctgtcg atgggcggaa aagcgatttt gtggatatgc acctggctga gcagatcacc
     6361 tttcaaatca agcccttcgg caaatgactg taagcccacc agcacactac gctcaccgtt
     6421 ggcaacgcgt ttgcggtgca gttcaactaa gcgataacgc ggctgatcgc cctgcaccag
     6481 cagcatcagg cgtaaatccg tcacatagtc gagaaagcgc tgcatcgccc gtccgctggc
     6541 aaacagtacc aacataccga gatgtttttt gctctccacc tgctcacgga aaaaggccgc
     6601 catttcggca atatgctgct cttcgttgtc gatggaaggc tcaaagcgca tccggggaat
     6661 aacaattttg ccctgttcgc agtggttaaa gggggaatcc agcgccacaa aacggtcgcc
     6721 cgctttctct ttcagcccgc tcatctcctg caaacgcgaa aaactgttca gcgaacgcaa
     6781 ggttgcggag gtgacaataa tgtgcggaat actgcgccac agcagccttt ccagctgatc
     6841 gctgacacgt attcccacgc agtgaaacca gagatgcagc tgcccttcgc gctcttcccg
     6901 cgtcgcccat ttggtcaccg gcgcaccgga agattgcgcc agagacgcca gccgccagag
     6961 tttgctttgc gcctcgaaca tccccaacgc gcggttcatc tgcaaaatca accgatgcag
     7021 acgcacaata tcgtggctgc cggttttctc acttaaatcg ttaagaaata actccgccag
     7081 accacgcagc atctcggtga gttttgccag ccgctggcag atctccagca cttcatcagg
     7141 cagttcgccc atcgcaaaac ggtgctctac ctcctgcccg gcaggcatgt agagattgag
     7201 aatgttgttt aacgaggcga taagctcata caactcttca caatgcgcat tcaaacgttc
     7261 agggatcgcc agcggtggga tggtcttcgg gcgaaactgc tccatgcagg tagcgaccag
     7321 tttcgtgaac aagtccagct gtagtcgata ccagggcgcg gtgatttcag cgctcatctc
     7381 cagcgcatcc cgggccacat ctggcaggtg atgaccttcg tccagcacca gcagcagatt
     7441 tttcgggtca ggcagtacgg cttcgctttc catcgccgcc atcaccagcg catggtttgc
     7501 caccaccact tccgcttcct gaatctcccg acgagcaaca aaaaacgggc attcacgata
     7561 gtagtaacag ttacggttaa ggcagctggc tttgtcggta ctcaaacgac gccagagatc
     7621 atcatctata gcgatatccg tatgatcgcg cagaccatcc catttataag tgtcgagatc
     7681 gcccttcagc ttcgcacaac gtttttgctc ttcctgatta tttggcgtca gttcgtcgtc
     7741 aagaaacgcc agcagatcct gttgcgtggg ttcagtgctg gcgagcgccg tcagattacg
     7801 cggacaaacg tagcgcccac gcccgaaagc ggcagtgaat ttaagatcgg gaatgatctt
     7861 tttcagcagc ggtaaatctt tgctgtaaat ctgatcctgc aacgccacgt tggcggtact
     7921 caccaccagc gttttttgct cttcgcgggc aatggcgatg ccggggatca aataggagag
     7981 cgttttccca acgccggtgg gggcttcaat cgccagatgc cgcccttctt ctccggccag
     8041 cgttttggcg acgtccgcaa tcatctgccg ctgcggcgca cggggaataa agtcggggat
     8101 ctgttcctga agcgccttat accaagcggc aatttgcgct ttaagcgcgg cggttaatgc
     8161 catgagaaaa cctgaaatac tgtataaaca gccaatattg tggcattttt cggttttcag
     8221 gggtaatggt ttttctgttt ctggaaagcg gctcgcaata accaccaaca taatgcggtt
     8281 taatgcccgt tcgagcacaa aggatccaac acgtcatgca agacaccatc ataaatttct
     8341 acagcaccag cgatgactac ggtgattttt ctaactttgc cgcctggccc atcaaggttg
     8401 acgggaaaac ctggcccacc tccgaacact attttcaggc acaaaaattc cttgatgaaa
     8461 aataccgcga agagatccgt cgggtttctt cccccatggt cgccgctcgc atggggcgta
     8521 atcgttccaa gccacttcgt aaaaactggg agtcggttaa agaacaggtg atgcgtaaag
     8581 cacttcgtgc taaattcgaa cagcatgcag aactgcgtgc gctcttgctg gcaaccgcgc
     8641 ccgcaaaact ggttgagcat acggaaaacg atgcttactg gggagacggt ggtaatggta
     8701 agggcaagaa tcgactgggc taccttttaa tggagttgcg cgaacaattg gctatagaga
     8761 agtaacgtct cggtggctta tgggcggtaa aacagataaa ttttttcccg tgttctcaaa
     8821 ttgctgacaa gtgcttgttg tgaaatgccg gatgcggcgt aaacgcctta tccggcctac
     8881 aaaagcatgc aaattcaata tattgcagag ttaacgtagg cctgataagc gtagcgcatc
     8941 aggcagtttt gcgtttgttc atcagcctga tgccgggcat agcccggcat aaaagattac
     9001 tgcgcagcgg caggtttacg cggacggcgg cgacgttgtt gttcgcctgc cggtttggca
     9061 tcgccgaggc ggcgagacgg tttttctgca ggtttcgcgc ttgcagattt tgcgccacct
     9121 tccccacggc gtggttgctg ttgaccgcga ccaccacctt gcccacgacc gccgccgcca
     9181 cgttgctggc gaccgttctg gatcggttcg gctttgattg acgggtccgg ctcatagccc
     9241 ggaatcgcaa tgcgcgggat ctcttttttc agcagttttt cgatatcacg cagcagtttg
     9301 tgttcatcaa cacacaccag cgacaacgct tcaccggtag cagccgcacg accggtacgc
     9361 ccgatacggt ggacataatc ttccggtacg tttggcagtt catagttgac gacgtgcggc
     9421 aactcttcga tatccagacc gcgcgcagcg atatcggtcg ccaccagtac gcgaatgtca
     9481 ctcgatttaa aatcagccag cgcacgggta cgcgcacctt gcgatttatt cccgtggatc
     9541 gccgcactac ggatgccatc tttattgagc tgctcagcca gatggttagc gccgtgtttg
     9601 gtacgggtaa acaccagcac ctgctgccag ttccctttac caatcatgtg cgacagcaat
     9661 tcgcgtttgc gtttcttatc gacaaagtga acgtgctggg tcacctgatc agacgcggta
     9721 ttgcggcgtg ccacttcgat ttccagcggg ttgtgcaaca gtttttccgc cagggcttta
     9781 atatcgtcag agaaggtcgc agagaacagc aggttctggc gtttcgctgg cagttttgtt
     9841 aacacgcgac ggatatcgtg gataaagccc atgtcgagca tgcggtcagc ttcatcgagg
     9901 acgaggattt caacctgatc cagcttcact gcattttgat gttccaggtc cagcaaacgt
     9961 cccggtgttg ccaccagaac atcaacgccg ccgcgcagct tcatcatttg cgggttaatg
    10021 ctgacaccgc caaacaccac cagcgaacga atgttcaaat atttgctgta atcacggacg
    10081 ttttcgccaa tctgcgcagc cagttcacgg gtcggggtaa gaatgagcgc acgtaccgga
    10141 cgacgccctt tggcgtgcgg ctggcgagtg atcaggtgtt gcaacagcgg cagcgtaaag
    10201 cccgctgttt taccggtacc ggtctgggcg ctagccatca ggtcgcggcc ttccagcacc
    10261 gcagggatcg cctgctgctg aataggggtg ggttcacggt aaccctgctc ggcaacggcg
    10321 cgcaggatat cagggcttaa acccaaagaa tcgaaagaca taactactcc gaaccgcccc
    10381 gaccgttacc ggtgtagttt tcagggagat actgaaaagg aaaatgacaa aaaccacaat
    10441 gtcatgaggg agcggagtgt agcagttttt gtgacgcagc gcataaatta tccctgtgac
    10501 tggcgttgct aaaattctta gccatactgg acaactcccc tatggagtca taatcttaat
    10561 caatcatttg attaagaatg gactgtgcga tgaataatcc tgccatgaca atcaagggtg
    10621 aacaggcgaa aaaacagctg attgctgccg cactggcgca gtttggtgaa tatggaatga
    10681 acaccaccac tcgcgagata gccgcccagg ccgggcagaa tatcgctgcc atcacctact
    10741 acttcggttc gaaagaagat ttgtacctcg cctgcgccca gtggattgcc gattttattg
    10801 gcgagcagtt ccgtccgcat gccgaggaag ccgaacgctt gttcgcgcaa ccacagcctg
    10861 atcgggctgc catccgtgaa ctgatccttc gcgcctgcag gaacatgatt aagctgctca
    10921 cccaggatga caccgtcaac ctcagcaagt ttatctcccg tgagcagctc tctcccacgg
    10981 cagcctacca cctggtgcac gaacaggtga ttagtccgct acacagccac ctgacacgcc
    11041 tgattgccgc ctggaccggc tgcgacgcca atgacacccg catgatcctt catacccatg
    11101 cgttgattgg tgagattctg gcgttccgtc ttggcaaaga aacaattctg ttacgtaccg
    11161 gctggaccgc gttcgatgaa gaaaagaccg aactgatcaa ccagacggtg acctgtcata
    11221 tcgacctgat tttgcaagga ttatcgcaaa ggagtttgta gtgatgaaaa aacctgtcgt
    11281 gatcggactg gcggtagtgg tacttgccgc cgtggttgcc ggaggctact ggtggtatca
    11341 aagccgccag gataacggcc tgaagctgta tggcaacgtg gatattcgta cggtgaatct
    11401 tagtttccgt gttggggggc gcgttgaatc gctggcggtg gacgaaggtg atgcgatcaa
    11461 agcgggccag gtgctgggcg aactggatca caagccgtat gagattgccc tgatgcaggt
    11521 gaaagcgggc gtctcggtgg cacaggcgca gtatgacctg atgcttgccg ggtatcgcga
    11581 tgaagaaatc gctcaggccg ccgcagcggt gaaacaggcg caagccgcct atgactatgc
    11641 gcagaacttc tataaccgcc agcaaggact gtggaaaagc cgcaccattt cggcaaatga
    11701 cctggaaaat gcccgctcct cgcgcgacca ggcacaggca acgctgaaat cagcacagga
    11761 taaattgcgt cagtaccgtt ccggtaaccg tgaacaggac atcgctcagg cgaaagccag
    11821 cctcgaacag gcgcaggcgc aactggcgca ggcggagctg aatttacagg actcaacgtt
    11881 gatagcaccg tctgatggca cactgttaac gcgcgcggtg gagccaggca cggttctcaa
    11941 tgaaggtggc acggtgttta ccgtttcact aacgcgtccg gtgtgggtgc gcgcttatgt
    12001 tgatgaacgg aatcttgacc aggcccagcc ggggcgcaaa gtgctgcttt ataccgatgg
    12061 tcgcccggac aagccgtatc acgggcagat tggtttcgtt tcgccgactg ctgaatttac
    12121 cccgaaaacc gtcgaaacac cggatctgcg taccgacctc gtctatcgcc tgcgtattgt
    12181 ggtgaccgac gccgatgatg cgttacgcca gggaatgccg gtgacggtgc aattcggtaa
    12241 cgaggcagga catgaatgat gccgttatca cgctgaacgg cctggaaaaa cgctttccgg
    12301 gcatgggcaa gcccgccgtc gcgccgctcg attgtaccat tcacgccggt tatgtgacgg
    12361 ggctggtggg gccggatggt gcaggtaaaa ccacgctaat gcggatgctg gcgggattac
    12421 tgaaacccga cagcggcaat gccacgatga ttggctttga tccaatcaaa aacgacggcg
    12481 cgctgcacgc cgtgctcggc tatatgccgc agaaatttgg tctgtatgaa gatctcacgg
    12541 tgatggagaa cctcaatctg tacgcggatt tgcgcagcgt caccggcgag gcacgtaagc
    12601 aaacttttgc tcgcctgctg gagtttacgt ctcttgggcc gtttaccgga cgcctggcgg
    12661 gcaagctctc cggtgggatg aaacaaaaac tcggtctggc ctgtaccctg gtgggcgaac
    12721 cgaaagtgtt gctgctcgat gaacccggcg tcggcgttga ccctatctca cggcgcgaac
    12781 tgtggcagat ggtgcatgag ctggcaagcg aagggatgtt aatcctctgg agtacctcgt
    12841 atctcgacga agccgagcag tgccgtgacg tgttactgat gaatgaaggc gagttgctgt
    12901 atcagggaga accaaaagcc ctgacacaaa ccatggccgg acgcagcttt ctgatgacca
    12961 gtccacacga gggcaaccgc aaactgttgc aacgcgcctt gaaactgcca caggtcagcg
    13021 acggcatgat tcaggggaaa tcggtacgtc tgatcctcaa aaaagaggcc acaccagacg
    13081 atattcgcca tgccgacggg atgccggaaa tcaacatcaa cgaaactacg ccgcgttttg
    13141 aagatgcatt tattgatttg ctgggtggtg ccggaacctc agaatcgccg ctgggtgcaa
    13201 tattgcatac ggtagaaggc acacccggcg agacggtgat cgaagcgaaa gaactgacca
    13261 agaaatttgg tgattttgcc gccaccgatc acgtcaactt tgccgttaaa cgtggggaga
    13321 tttttggttt gctggggcca aacggcgcgg gtaaatcgac cacctttaag atgatgtgcg
    13381 gtttgctggt gccgacttcc ggccaggcgc tggtgctggg gatggatctg aaagagagtt
    13441 ccggtaaagc gcgccagcat ctcggctata tggcgcaaaa attttcgctc tacggcaacc
    13501 tgacggtcga acagaattta cgctttttct ctggtgtgta tggcttacgc ggtcgggcgc
    13561 agaacgaaaa aatctcccgt atgagcgagg catttggcct gaaaagtatc gcctcccacg
    13621 cgaccgatga actgccatta ggttttaaac agcggctggc gctggcctgt tcgctgatgc
    13681 atgaaccgga cattctgttt ctcgacgaac caacgtccgg cgttgatccc ctcacccgcc
    13741 gcgaattttg gctgcatatc aacagcatgg tagagaaagg cgtcacggtg atggtcacca
    13801 ctcactttat ggatgaagca gaatattgcg accgcatcgg cctggtgtac cgtgggaaat
    13861 taattgccag cggcacgccg gatgatttga aagcgcagtc ggccaacgac gagcaacccg
    13921 atcccaccat ggagcaagcc tttattcagt tgatccacga ctgggataag gagcatagca
    13981 atgagtaacc cgatcctgtc ctggcgtcgc gtacgggcgc tgtgcgttaa agagacgcgg
    14041 cagatcgttc gcgatccgag tagctggctg attgcggtag tgatcccgct gctactgctg
    14101 tttatttttg gttacggcat taacctcgac tccagcaagc tgcgggtcgg gattttactg
    14161 gaacagcgta gcgaagcggc gctggatttc acccacacca tgaccggttc gccctacatc
    14221 gacgccacca tcagcgataa ccgtcaggaa ctgatcgcca aaatgcaggc ggggaaaatt
    14281 cgcggtctgg tggttattcc ggtggatttt gcggaacaga tggagcgcgc caacgccacc
    14341 gcaccgattc aggtgatcac cgacggcagt gagccgaata ccgctaactt tgtacagggg
    14401 tatgtcgaag ggatctggca gatctggcaa atgcagcgag cggaggacaa cgggcagact
    14461 tttgaaccgc ttattgatgt acaaacccgc tactggttta acccggcggc gattagccag
    14521 cacttcatta tccccggtgc ggtgaccatt atcatgacgg tcatcggcgc gattctcacc
    14581 tcgctggtgg tggcgcgaga atgggaacgc ggcaccatgg aggctctgct ctctacggag
    14641 attacccgca cggaactgct gctgtgtaag ctgatccctt attactttct cgggatgctg
    14701 gcgatgttgc tgtgtatgct ggtgtcagtg tttattctcg gcgtgccgta tcgcgggtcg
    14761 ctgctgattc tgttttttat ctccagcctg tttttactca gtaccctggg gatggggctg
    14821 ctgatttcca cgattacccg caaccagttc aatgccgctc aggtcgccct gaacgccgct
    14881 tttctgccgt cgattatgct ttccggcttt atttttcaga tcgacagtat gcccgcggtg
    14941 atccgcgcgg tgacgtacat tattcccgct cgttatttcg tcagcaccct gcaaagcctg
    15001 ttcctcgccg ggaatattcc agtggtgctg gtggtaaacg tgctgttttt gatcgcttcg
    15061 gcggtgatgt ttatcggcct gacgtggctg aaaaccaaac gtcggctgga ttagggagaa
    15121 gagcatgttt catcgcttat ggacgttaat ccgcaaagag ttgcagtcgc tgctgcgcga
    15181 accgcaaacc cgcgcgattc tgattttacc tgtgcttatt caggtgattc tgttcccgtt
    15241 cgccgccacg ctggaagtga ctaacgccac catcgccatc tacgatgaag ataacggcga
    15301 gcattcggtg gagctgaccc aacgttttgc ccgcgccagc gcctttactc atgtgctgct
    15361 gctgaaaagc ccacaggaga tccgcccaac catcgacaca caaaaggcgt tactcctggt
    15421 gcgtttcccg gctgacttct cgcgcaaact ggataccttc cagaccgcgc cgttgcagtt
    15481 gatcctcgac gggcgtaact ccaacagtgc gcaaattgcc accaactacc tgcaacagat
    15541 cgtcaaaaat tatcagcagg aactgctgga aggaaaaccg aaacctaaca acagcgagct
    15601 ggtggtacgc aactggtata acccgaatct cgactacaaa tggtttgtgg tgccgtcact
    15661 gatcgccatg atcaccacta tcggcgtaat gatcgtcact tcactttccg tcgcccgcga
    15721 acgtgaacaa ggtacgctcg atcagctact ggtttcgccg ctcaccacct ggcagatctt
    15781 catcggcaaa gccgtaccgg cgttaattgt cgccaccttc caggccacca ttgtgctggc
    15841 gattggtatc tgggcgtatc aaatcccctt cgccggatcg ctggcgctgt tctactttac
    15901 gatggtgatt tacggtttat cgctggtggg attcggtctg ttgatttcat cactctgctc
    15961 gacacaacag caggcgttta tcggcgtgtt tgtctttatg atgcccgcca ttctcctttc
    16021 cggttacgtt tcgccggtgg aaaacatgcc agtatggctg caaaacctga cgtggattaa
    16081 ccctattcgc cactttacgg acattaccaa gcagatttat ttgaaggatg cgagtctgga
    16141 tattgtgtgg aatagtttgt ggccgctact ggtgataacg gccacgacag ggtcagcggc
    16201 gtacgcgatg tttagacgta aggtgatgta acttcttatc tttcgccagc aaagacacta
    16261 ccgccgggcc ggcaaggatt gccagccctg caattgccag caaaaagttg ttttccagta
    16321 cgcgggacaa cagccacagc acaatcagcg ctgcgccaaa ataccaggtc gtggtcagct
    16381 cttccaacac gtctgccacc tcacgccagc gttgctcggg gtggcgctga aacaccaaca
    16441 tcatcactac cgtgacacaa tacagtgcgc ataatcccac gccgacgtga accagagtct
    16501 tactcatcca gcccaccacc agcagcgcca ctaccagtaa atgcaacata atctgccagc
    16561 aacttagacc cgttgcgaca cgaacacgtt gttgccactt catggcttct ctcctgaaga
    16621 atttatctct acttactcag agtaccgaac tttacggaaa attccgtaag accgcacctt
    16681 tttgtgacgc cgactacact atttcaatga gataagaggc aaagacagga aaattatgcc
    16741 cgatcaaaca caacaatttt cgttcaaggt gctcaccatc aacattcaaa aaggttttac
    16801 cgcgtttaac cgacgcttca ttttgccgga acttcgcgac gcggtgcgta ccgtcagcgc
    16861 cgatattgtt tgcctgcagg aagtgatggg cgcgcacgaa gttcatccgc tgcatgtgga
    16921 aaactggccc gatacctcgc actacgagtt tctcgccgac actatgtgga gcgattttgc
    16981 ctacggtcgc aatgccgtat acccggaagg gcatcacggc aacgccgtac tgtcgcgtta
    17041 tcccattgaa cattatgaga atcgcgatgt ttcggtcgat ggtgcggaaa agcgcggcgt
    17101 gctctactgc cgcattgtgc cgccgatgac cggaaaagcg attcatgtga tgtgcgtaca
    17161 tctgggcctg cgtgaggcgc accgtcaggc gcagcttgcg atggggtgaa tgagctaccg
    17221 gacggcgaac cggtattggt ggcgggtgat ttcaatgact ggcggcaaaa agctaatcat
    17281 ccgttaaaag tgcaggccgg actggatgag atttttaccc gcgcccacgg acgcccggcg
    17341 cgcacgtttc cggtgcaatt tcctctacta cgactggaca ggatctacgt caaaaatgcc
    17401 agcgccagcg cgccaaccgc gttgccgctg cggacatggc gacacctttc tgatcatgcc
    17461 cctttaagtg cggagattca tttatgaaat gtagctggcg cgaaggcaat aagatccagt
    17521 tgctggaaaa cggcgagcaa tattatcccg cggtgtttaa ggcgattggc gaggcacaag
    17581 aacgcatcat tcttgaaacg tttatctggt ttgaggataa cgtcggcaaa cagctgcatg
    17641 cggcactact ggcagcagcg caacgcgggg ttaaagcgga agtcttgctg gatggctacg
    17701 gttcgccgga tctcagcgat gagtttgtca ataaactgac ggcagctggc gtagtgttcc
    17761 gctactacga tccccgccct cgcctttttg gtatgcgcac caatgtgttt cgccggatgc
    17821 atcgcaaaat tgtggtgatc gacgcgcgta tcgcctttat tggcgggctg aattactccg
    17881 ccgagcatat gtccagctac ggtccagagg ctaaacagga ttacgcggta cgccttgaag
    17941 ggccgattgt cgaagatatt ctccagtttg agctggaaaa cctgcctgga cagagcgcgg
    18001 cacggcgctg gtggcgacgt catcacaaag cggaagagaa ccgccagccg ggagaagcgc
    18061 aggtattgct ggtctggcgc gataacgaag aacatcgcga tgatattgaa ccccattatc
    18121 tgaaaatgct cactcaggcg cggcgggaag tgattatcgc caacgcctac ttcttccccg
    18181 gctatcgatt tttacacgcc ttgcgtaaag cggcacggcg cggggtgcgg atcaaactga
    18241 tcattcaggg cgaaccggat atgccgattg tcagagtcgg tgcgcgcttg ctgtataact
    18301 atctggttaa aggcggcgtt caggtttttg agtaccgccg ccgcccgctc cacggcaaag
    18361 tggcattgat ggacgatcac tgggcgacag tagggtccag taatctcgat ccgctcagtt
    18421 tgtcactgaa tctcgaagca aatgtcatca tccacgatcg tcattttaac cagacgctgc
    18481 gcgataatct gaacggcatt attgccgcag attgtcagca ggtggatgaa accatgctgc
    18541 ccaaacgcac ctggtggaac ctgaccaaaa gcgtgctgga gttccacttt ttacgccact
    18601 tcccggcgct ggttggctgg catccggcac acacaccacg tctgacgcag gttgatcccc
    18661 ccgcacaacc gacaatggaa acgcaggatc gggtagaaac tgaaaacacg ggggtaaaac
    18721 cctgatgagt aaatcacacc cgcgctagcg cttagcaaag aagatcctca cctggctgtt
    18781 ttttatcgcg gtgattgtgt tgctggtggt ctacgccaaa aaagtggact gggaagaggt
    18841 ctggaaggtc atccgcgact acaatcgcgt tgcgctgctt agtgcggtcg ggctggtggt
    18901 cgtcagctat ctgatttacg gctgctatga cctgctcgcc cgcttttact gcggtcacaa
    18961 actggcgaag cgccaggtga tgctggtgtc gtttatctgc tacgccttca acctgacgct
    19021 cagtacctgg gtcggcggca ttggtatgcg ctatcgtttg tactcccgac tagggttacc
    19081 gggcagcact attacgcgga ttttctcgct cagtattacc accaactggc tgggctatat
    19141 tttactggca gggattatct ttaccgcagg cgtggtggag ttgccggatc actggtatgt
    19201 cgctcaaact acgctgcgta ttctcggcat tggcttactg atgattatcg cggtttattt
    19261 gtggttttgc gctttcgcga agcaccgcca tatgaccatc aaagggcaaa agctggtgct
    19321 gccttcatgg aaattcgccc tcactcagat gctgatttcc agcgttaact ggatggtaat
    19381 gggggcgatt atctggctgt tacttggtca aagcgtgaac tatttctttg tactgggcgt
    19441 gttactggtt agtagtattg ctggcgtcat cgtgcatatt ccggcgggga tcggtgtgct
    19501 ggaagcggtg tttatcgcac tactggctgg ggagcatacc tcgaaaggga gcattatcgc
    19561 cgcgctgctc gcttatcgcg tcctgtatta ctttatcccg ctgctgctgg cgctgatctg
    19621 ttacctgcta ctggaaagcc aggcgaagaa gctacgggcg aaaaatgaag cggcgatgtg
    19681 aaatttagtt aagttcttta gtatctgcat tcacgactaa tgaaaaaaac gcgtatgcct
    19741 ttgccagaca agcgttatag ctatcgcggc aagtatccca aagaagccga taaaatagta
    19801 atagagtgtt aatgcacctg taaaagcgca acgaaccgga ctccacaact cttcactatg
    19861 gcattttcct gccagttcaa ggagcttatt tcgtccatgc gagataatgc ctggccataa
    19921 cacaatcact aagcaactta ttacccaaat gggccgttca ctcattaatg ccgcattcac
    19981 gatgattacc agggccaacc ctgtcaacgt catcataatg ataaaacggt gagaaccagg
    20041 atcaacatta aataataaac cggccagcat actgattaaa aacatcgcgc ccgcagtgct
    20101 gaacacaatg ataa
//
LOCUS       DAJVUY010000071        20029 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.071, whole genome shotgun sequence.
ACCESSION   DAJVUY010000071 DAJVUY010000000
VERSION     DAJVUY010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20029
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.071"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..312
                     /locus_tag="OQQ72_002253"
     CDS             <1..312
                     /locus_tag="OQQ72_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS2011963.1"
                     /translation="CIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCE
                     GKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASYSVTGFN
                     L"
     gene            309..716
                     /locus_tag="OQQ72_002254"
     CDS             309..716
                     /locus_tag="OQQ72_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HCS2011964.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTGEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            701..1024
                     /locus_tag="OQQ72_002255"
     CDS             701..1024
                     /locus_tag="OQQ72_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS2011965.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSPGGREGEMTRLH
                     CPNRQ"
     gene            1037..4405
                     /gene="recC"
                     /locus_tag="OQQ72_002256"
     CDS             1037..4405
                     /gene="recC"
                     /locus_tag="OQQ72_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HCS2011966.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRLWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDNI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            4581..7469
                     /gene="ptrA"
                     /locus_tag="OQQ72_002257"
     CDS             4581..7469
                     /gene="ptrA"
                     /locus_tag="OQQ72_002257"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HCS2011967.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTTEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            7462..11004
                     /gene="recB"
                     /locus_tag="OQQ72_002258"
     CDS             7462..11004
                     /gene="recB"
                     /locus_tag="OQQ72_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS2011968.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPVLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            11004..12830
                     /gene="recD"
                     /locus_tag="OQQ72_002259"
     CDS             11004..12830
                     /gene="recD"
                     /locus_tag="OQQ72_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HCS2011969.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(12892..14223)
                     /gene="argA"
                     /locus_tag="OQQ72_002260"
     CDS             complement(12892..14223)
                     /gene="argA"
                     /locus_tag="OQQ72_002260"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HCS2011970.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            14455..15708
                     /gene="amiC"
                     /locus_tag="OQQ72_002261"
     CDS             14455..15708
                     /gene="amiC"
                     /locus_tag="OQQ72_002261"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiC"
                     /protein_id="HCS2011971.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            15968..16120
                     /locus_tag="OQQ72_002262"
     CDS             15968..16120
                     /locus_tag="OQQ72_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCS2011972.1"
                     /translation="MIIEKVMNNNCVQASVNGQEVIISGPGVGYNKNMVCRSLSILQT
                     GFLCQK"
     gene            16143..16790
                     /locus_tag="OQQ72_002263"
     CDS             16143..16790
                     /locus_tag="OQQ72_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS2011973.1"
                     /translation="MIEHVGIEYIFVAEKIVHYAESNLEKKLNPSLLLILADHISNAI
                     SRVVSGIQINNVFLEEIKALYKAEYAISRDALTIINEQFSVQLPDDEIGFIALHILNN
                     YENSVDYESVRIIELSQKITELIEVVYNRRVDRSSFNYSRFMMHLKYFSSRVLCNEKI
                     KQKNIGDIYEQFLEKDFQLQRAIHEIERYLYATFKYDLILEEKLYLSIRIKVLMD"
     gene            16822..18402
                     /locus_tag="OQQ72_002264"
                     /pseudo
     CDS             16822..18402
                     /locus_tag="OQQ72_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000810568.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            18402..19610
                     /locus_tag="OQQ72_002265"
     CDS             18402..19610
                     /locus_tag="OQQ72_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000382418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PatB family C-S lyase"
                     /protein_id="HCS2011974.1"
                     /translation="MDIFNTSISRKGTYCTQWDFCEDRFGVKDVLPFSISDMDLPIPE
                     AIIRTLKKRLEHPILGYSRWQHDDYLNSIVNWYHQQYKTEIQPEWITYSPSVMYSISK
                     AIEILTLNGDNILIFTPVYNAFFDVIKHNGRNMLTTSLMKENGRGYVINWQDFELKIK
                     SAKMVLLCNPHNPTGTVWSEDDLHRIAACCARHNIWLCSDEIHSDFVFNHSFTSALTI
                     KDDKVVVFNSISKTFNVPALTGSYMISTDDNFNHKFRTISRYRDFVNSPSVLNVIATI
                     VAYNECEEWLKSLKVHIASNIQFTLQYLNENIPELIVWPAEGCYFSWVDCSALGYPFD
                     KFYRRLINEGRVGIMAGHVYGTEGEGYLRLNLACSREKLYMGLARLASVIKNINQEKE
                     NEQYGSYPSY"
     gene            19579..>20029
                     /locus_tag="OQQ72_002266"
     CDS             19579..>20029
                     /locus_tag="OQQ72_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001683249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HCS2011975.1"
                     /translation="MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQG
                     KVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGE
                     TAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNL"
BASE COUNT         4962 a         4665 c         5348 g         5054 t
ORIGIN      
        1 tgtatcattg tgcagtggga tgcgaacagt aacggtatct gggatcgcga accggtaaaa
       61 gagtccgacc agattggatt tcgtctgaag gagcatgtgc tggaaacgct acgcggtgcg
      121 acatcctgtg aaggtaaggg ctgggataaa gtcactaatc cggatgccat cattatcgac
      181 acttttcagg tcgtacgtca ggatgtcagc ggcttctcgc cggtgttgac ggttaatatg
      241 cgtgctgcca gtaagtctga accgcaaacc gtggtgaatg ccagctatag cgtgacagga
      301 ttcaacctgt gaaccgcgaa aagggtgttt cgtcactggc tctggtcctg atgctgctgg
      361 ttttgggtag tttgctatta caaggaatga gccaacagga tcgcagtttt gcctctcgcg
      421 tgagcatgga aagtcagtca ttgcgccgcc aggccatcgt tcagtcggcg ctggcgtggg
      481 gaaaaatgca ctcctggcag acgcagccag cagttcagtg ctcgcagtac gctgaaaccg
      541 atgcccaggt ttgtttgcgt ttactggcag ataatgaagc cttattgatt gccggttatg
      601 aaggcgtttc gttgtggcga acaggcgaag tcattgatgg aaacattgtt ttttcgccaa
      661 gcggctggag cgatttttgt ccgctgaaag agagggcgtt atgtcagctt ccctgaagaa
      721 tcaacaaggc tttagcctgc cggaggtaat gttggcgatg gtgttgatgg tgatgattgt
      781 cactgcgtta tcgggtttcc agcgaacatt aatgaacagt cttgccagca gaaaccagta
      841 ccaacagctc tggcggcatg gctggcagca aacgcaactg cgcgcgattt cgccaccagc
      901 taactggcag gtcaaccgat tgcagacatc gcaggcggga tgtgtcagca tcagcgttac
      961 gctagtttca cccgggggca gagaaggcga gatgacccgc ctgcattgcc cgaatcgtca
     1021 gtagtcagga gccgctatgt taagggtcta ccattccaat cgtctggacg tgctggaagc
     1081 gttgatggag tttattgtcg aacgcgaacg gctggacgat cctttcgaac cagagatgat
     1141 tctggtgcaa agtaccggta tggcacagtg gctgcaaatg accctgtcgc aaaagtttgg
     1201 tattgcggca aacattgatt ttccgctgcc tgcgagcttt atctgggata tgttcgtccg
     1261 ggtgttaccg gagatcccca aagagagcgc ctttaacaaa cagagcatga gctggaaact
     1321 gatgactctg ctgccgcaac tgttggagca cgaagacttt accctgttgc ggcattatct
     1381 gactgacgat agcgacaagc gaaaactgtt ccagctttcc tcaaaagcgg cggacctgtt
     1441 tgaccagtat ctggtctatc gcccggagtg gctggcacaa tgggaaacag gacatttggt
     1501 tgaagggctg ggagaagcac aggcctggca agcgccgttg tggaaggcgc tggtggaata
     1561 tacccatgaa ctcggacaac cgcgctggca ccgcgcgaat ctctatcagc gctttatcga
     1621 aacgctggag tccgcgacga cctgcccgcc ggggttacct tcgcgcgtct ttatatgcgg
     1681 tatttccgcg ttaccgcctg tttatctcca ggcgctccag gcgctgggta aacatattga
     1741 aatccatctc ctgtttacca acccctgccg ttattactgg ggcgatatta aagatcctgc
     1801 ttatctggcg aaactgctga ctcgtcagcg tcgacacagt tttgaagatc gcgaattgcc
     1861 gctatttcgc gatagcgaaa atgccggaca gctctttaac agcgatggtg aacaggatgt
     1921 cggcaacccg ctgctggcct catgggggaa gcttgggcgc gactacattt atctcctttc
     1981 tgacctggag agcagccagg agctggacgc ctttgtcgat gtcacgccag ataacctgct
     2041 gcataacatt cagtctgaca ttctggaact ggaaaaccgt gccgttgctg gtgtgaacat
     2101 cgaagagttt tcccgtagcg ataacaaacg cccgcttgat ccactggata gcagtatcac
     2161 cttccacgtt tgccatagcc cgcagcgtga agttgaagtt ttgcacgatc gcctgctggc
     2221 gatgctggaa gaagacccga cacttactcc gcgcgacatc atcgtgatgg tggctgatat
     2281 cgacagctac agtccgttta ttcaggctgt gtttggtagc gcacctgcgg atcgttacct
     2341 gccttacgcc atttccgacc gtcgggcgcg gcagtcgcat ccggtactgg aagcgtttat
     2401 cagcctgtta tcgttgccag acagccgctt tgtgtcggaa gacgtgctgg cattactgga
     2461 tgtgccggtg ctggcggcgc ggtttgacat caccgaagaa gggctgcgtt atttacgcct
     2521 gtgggtcaac gaatccggca ttcgttgggg gatagatgac gacaacgttc gcgagctgga
     2581 actccccgcc accggacaac acacctggcg atttggcctg acgcgtatgt tgctgggcta
     2641 cgcgatggag agcgcgcagg gcgagtggca atcggttcta ccttatgatg agtcgagcgg
     2701 cttaattgca gaactggtgg ggcatctggc ttcactgcta atgcagctaa acatctggcg
     2761 tcgcgggctg gcacaggagc gtccgctaga agagtggttg ccggtttgtc gcgatatgct
     2821 caacgccttc ttcctgccgg atgcggaaac cgaagcggcg atgacgctga tcgaacaaca
     2881 atggcaggcg attatcgccg aaggtttagg tgcgcagtat ggcgacgcgg tgccgctgtc
     2941 actattgcgt gatgaactgg cacagcgtct ggatcaagaa cgtatcagcc agcgttttct
     3001 cgccggaccg gttaacattt gtactctgat gccaatgcgt tcaattccgt tcaaagtggt
     3061 ttgcctgctg ggaatgaacg acggcgttta tccacgtcag cttgcgccat tgggctttga
     3121 cctgatgagc cagaaaccga agcgtggcga ccgtagccgt cgcgatgacg accgctacct
     3181 gttcctggaa gcgttaattt ccgcgcagca aaaactctat atcagttata tcgggctttc
     3241 cattcaggat aacagtgaac gtttcccgtc ggtactggtg caggaactga tcgactacat
     3301 cgggcaaagt cattatctac cgggcgatga agcgctcaac tgtgatgaaa gcgaggcaag
     3361 ggtaaaagcg catcttacct gcctccatac ccggatgccg tttgatccac aaaactacca
     3421 gccaggcgaa cgacaaagct atgctcgtga atggctacct gcggccagcc aggctggtaa
     3481 agcacattct gaatttgttc agccgctgcc gtttacctta ccggaaaccg tgccgctgga
     3541 aacgctacaa cgattctggg cacatccggt gcgggcattt ttccagatgc gtttgcaggt
     3601 gaacttccgt accgaagaca gcgaaatccc cgacaccgag ccatttattc tggaagggct
     3661 tagccgttat caaatcaatc agcagttatt gaatgcactg gttgagcagg atgatgccga
     3721 acgcttgttc cgtcgcttcc gggcggcagg ggatttaccg tatggcgctt ttggtgaaat
     3781 tttctgggaa actcagtgcc aggagatgca gcagcttgcc gacagagtca ttgcctgtcg
     3841 ccagccgggg cagagtatgg aaattgatct cgcctgcaac ggtgtgcaga taactggctg
     3901 gttgccgcag gtgcagccgg atggcctgtt gcgctggcgt ccctctttat taagtgtggc
     3961 gcagggaatg caactttggc tggaacacct tgtctactgt gccagcggtg gtaatggtga
     4021 aagtcgcctt tttctacgca aagacggcga gtggcgtttt ccgccgcttg cagccgaaca
     4081 ggctttgcat tacctctcac aactgattga ggggtatcgt gaagggatgt ccgcgccatt
     4141 gctggtgtta cctgaaagtg gcggcgcgtg gctaaaaacc tgttatgacg cgcaaaacga
     4201 tgccatgctg gatgacgatt ccacgttgca aaaagcccgt acgaaattcc ttcaggctta
     4261 cgaaggcaac atgatggtgc gtggcgaagg tgataatatc tggtatcaaa ggctctggcg
     4321 gcaattaaca ccagagacaa tggaggccat cgttgaacag tcgcaacgtt tcctgttacc
     4381 gctgtttcgc tttaatcagt catgagtgct gtataaaaat tgcgcaatct atccgcttac
     4441 tttatgatgc gcaccagtca cggactgatg gttatataaa cataggctga ctcgtgcagc
     4501 acaagattaa attctggcag atgatttgcg ttaacgtgtt gaatctggac agaaaattaa
     4561 gttgattatg aggtccgtga atgccccgca gcacttggtt caaagcatta ttgttgttag
     4621 ttgccctttg ggcaccctta agtcaggcag aaacgggatg gcagccgatt caggaaacca
     4681 tccgtaaaag tgataaagat aaccgccagt atcaggctat acgtctggat aacggtatgg
     4741 tggtcttgct ggtttctgat ccgcaggcag ttaaatcgct ctcggcgctg gtggtgcccg
     4801 ttgggtcgct ggaagatccc gaggcgtacc aggggctggc acattacctt gaacatatga
     4861 gtctgatggg gtcgaaaaag tacccgcagg ctgacagtct ggccgaatat ctcaaaatgc
     4921 acggcggtag tcacaatgcc agcactgcgc cgtatcgcac ggctttctat ctggaagttg
     4981 agaacgacgc cttgcctggt gcggtagacc gcctggccga tgctattgct gaacctttgc
     5041 tcgacaagaa atatgccgaa cgtgagcgta atgcggtgaa cgctgaatta accatggcgc
     5101 gtacgcgtga cgggatgcgc atggcacagg tcagcgcaga aaccattaac ccggcacacc
     5161 ccggttcaaa gttttctggt ggtaacctcg aaactttaag cgataaacct ggtaatccgg
     5221 tgcagcaggc gctgaaagat ttccacgaga agtactattc cgccaatctg atgaaggcgg
     5281 ttatttacag caataaaccg ctgccggagt tggcaaaaat ggcggcggac acctttggtc
     5341 gcgtgccgaa caaagagagc aaaaaaccgg aaatcaccgt gccggtagtc accgacgcgc
     5401 aaaagggcat tatcattcat tacgtcccgg cactgccgcg taaagttctg cgcgttgagt
     5461 ttcgcatcga taacaactca gcgaagttcc gtagtaaaac ggatgaattg attacctatc
     5521 tgattggtaa tcgcagccca ggtacacttt ccgactggct gcaaaagcag ggattagttg
     5581 agggcattag cgccaactcc gatcctatcg tcaacggcaa cagcggcgta ttagcgatct
     5641 ctgcgtcttt aaccgataaa ggcctggcta atcgcgatca ggttgtggcg gcaattttta
     5701 gctatctcaa tctgttacgt gaaaaaggca ttgataaaca atacttcgat gaactggcga
     5761 atgtgctgga tatcgacttc cgttatccgt cgatcacccg tgatatggat tacgtcgaat
     5821 ggctggcaga taccatgatt cgcgttccgg ttgagcatac gctggatgca gtcaatattg
     5881 ccgatcggta cgatgctaaa gcagtaaaag aacgtctggc gatgatgacg ccgcagaatg
     5941 cgcgtatctg gtatatcagc ccgaaagagc cgcacaataa aacggcttat tttgtcgatg
     6001 cgccgtatca ggtcgataaa atcagcgaac aaactttcgc tgactggcag caaaaagctg
     6061 ccaatattgc gctctcctta ccggagctta acccctatat tcctgacgat ttctcgctga
     6121 ttaagtcaga gaagaaatat gaccatccag agctgattgt tgatgagtcg aatctgcgcg
     6181 tggtgtatgc gccaagccgt tatttttcca gcgaacccaa agctgatgtc agcctgattt
     6241 tgcgtaatcc gaaagccatg gacagcgccc gcaatcaggt gatgtttgcg ctcaatgatt
     6301 atctcgcagg gctggcgctt gatcagttaa gcaaccaggc gtcggttggt ggcataagtt
     6361 tttccaccaa cgctaacaac ggccttatgg ttaatgctaa tggttacacc cagcgtctgc
     6421 cgcagctgtt ccaggcattg ctcgaggggt actttagcta taccgctacg gaagatcagc
     6481 ttgagcaggc gaagtcttgg tataaccaga tgatggattc cgcagaaaag ggtaaagcgt
     6541 ttgagcaggc gattatgccc gcgcagatgc tctcgcaagt gccgtacttc tcgcgagatg
     6601 aacggcgtaa aattttgccc tccattacgt tgaaagaggt gctggcctat cgcgacgcct
     6661 taaaatcagg ggctcgacca gagtttatgg ttatcggcaa catgaccgag gcccaggcaa
     6721 caacgcaggc acgcgatgtg caaaaacagt tgggcgctga tggttcagag tggtgtcgaa
     6781 acaaagatgt agtggtcgat aaaaaacaat ccgtcatctt tgaaaaagcc ggtaacagca
     6841 ccgactccgc actggcagcg gtatttgtac cgactggcta cgatgaatac accagctcag
     6901 cctatagctc tctgttgggg cagatcgtac agccgtggtt ctacaatcag ttgcgtaccg
     6961 aagaacaatt gggctatgcc gtgtttgcgt ttccaatgag cgtggggcgt cagtggggca
     7021 tgggcttcct tttgcaaagc aatgataaac agccttcatt cttgtgggag cgttacaagg
     7081 cgtttttccc aaccacagag gcaaaattgc gagcgatgaa gccagatgag tttgcgcaaa
     7141 tccagcaggc ggtaattacc cagatgctgc aggcaccgca aacgctcggc gaagaagcat
     7201 cgaagttaag taaagatttc gatcgcggca atatgcgctt cgattcgcgt gataaaatcg
     7261 tggcccagat aaaactgctg acgccgcaaa aacttgctga tttcttccat caggcggtgg
     7321 tcgagccgca aggcatggct attctgtcgc agatttccgg cagccagaac gggaaagccg
     7381 aatatgtaca ccctgaaggc tggaaagtgt gggagaacgt cagcgcgttg cagcaaacaa
     7441 tgcccctgat gagtgaaaag aatgagtgat gtcgccgaga cactagatcc tttgcgcttg
     7501 cccttacagg gtgagcgcct gattgaagcc tctgccggca caggcaaaac ctttacgatt
     7561 gcggcgctct atttgcgcct gttacttgga ctaggcggtt ccgccgcctt tccccgcccg
     7621 ctgaccgttg aagaactgct ggtggtcacc tttaccgagg ctgccacggc agaattgcgt
     7681 ggtcgtatcc gtagcaatat ccatgagttg cgcatcgcct gtctgcgtga aactaccgac
     7741 aatccactgt acgaacgtct gctggaagag atcgacgata aagcgcaagc cgcgcagtgg
     7801 ttgttgttag ccgaacggca gatggatgaa gcggcagtct ttactattca cggtttttgc
     7861 cagcgcatgc tcaacctgaa tgcctttgaa tccggcatgc tgtttgagca gcagctgatt
     7921 gaagatgagt ctctgctacg ttaccaggcc tgcgccgatt tctggcgtcg ccactgctac
     7981 ccgctgccgc gtgaaatagc ccaggtcgtc tttgaaacct ggaaagggcc gcaggcgttg
     8041 ctgcgcgata ttaatcgtta tctgcaaggc gaagcgccgg ttatcaaagc accgccgccc
     8101 gatgatgaaa cgctggcttc ccgccacgcg caaattgtgg cgcgtattgc tacggtaaaa
     8161 cagcagtggc gcgacgcagt gggtgaactg gatgcgctga tcgaatcttc tggtattgat
     8221 cgacgcaagt ttaaccgtag caatcaggct aaatggatcg acaagatcag cgcctgggca
     8281 gaagaagaga ccaacagtta tcagttgccg gagtcgctgg aaaaattctc ccagcgtttc
     8341 ttagaagatc gcacgaaagc tgggggggaa accccgcgac atccactgtt tgaggcgatc
     8401 gatcaactgc ttgcagaacc attgtcgatc cgcgatctgg tgatcacccg cgcattggct
     8461 gagatccgcg aaacagtagc gcgtgaaaaa cgccgccgtg gcgaattggg ttttgatgac
     8521 atgttaagtc ggctcgattc cgcgctgcgt agcgaaagcg gtgaggtgtt ggcagcggcg
     8581 atccgtacgc gattcccggt ggcaatgatc gatgaatttc aggataccga cccccagcag
     8641 taccgaattt ttcgccgtat ctggcaccat cagccggaaa ccgcattgtt gctgattggc
     8701 gacccgaagc aggccatata tgcattccgg ggtgcggata tcttcactta tatgaaggcg
     8761 cgtagtgaag ttcacgccca ctacacttta gacaccaact ggcgctccgc acctggaatg
     8821 gtgaacagtg tgaacaagct tttcagccag actgatgacg cgttcatgtt tcgcgaaata
     8881 ccgtttattc cagtgaaatc agccgggaaa aatcaggcgt tacgttttgt atttaaaggt
     8941 gaaacgcagc ctgcgatgaa aatgtggctg atggaaggcg aaagctgcgg cgttggcgac
     9001 tatcaaagta ccatggcgca ggtatgtgct gcgcaaatcc gcgactggct acaagccgga
     9061 cagcggggcg aagcgttgct gatgaacggc gacgacgcgc gtccggtgcg tgcttcggac
     9121 atcagtgtgc tggtgcgcag ccgccaggag gccgcccagg tgcgcgatgc cttaacgttg
     9181 ctggaaatcc cttccgttta cctttcgaac cgcgacagtg tttttgaaac tctggaagcg
     9241 caggaaatgc tttggttatt gcaggcggtg atgacgcccg aacgtgagaa caccctgcgt
     9301 agtgcgctgg caacgtcaat gatggggctg aacgcgctgg atatcgaaac gctgaataat
     9361 gacgaacatg cgtgggatgc ggtagttgaa gagttcgatg gttatcggca aatctggcgc
     9421 aaacgtggcg ttatgccgat gctgcgggcg ctgatgtcgg cgcgtaacat tgcagaaaac
     9481 ttgctggcaa cggcaggcgg tgagcggcgt cttaccgata tcttgcatat cagcgaactg
     9541 ctacaagaag ccggaacgca gctggaaagt gaacatgcgc tggtacgctg gttatcgcaa
     9601 catatcctcg agccagacag taatgcctcc agccaacaaa tgcgcctcga aagtgataaa
     9661 catctggtgc agattgtcac gatccataaa tcgaaagggc tggaatatcc gctggtctgg
     9721 ttgccattta ttaccaattt ccgcgtccag gatcaggcgt tttatcacga tcgccactcg
     9781 tttgaggcag ttttggatct taatgctgcg ccaaaaagcg tcgacctcgc ggaggtcgaa
     9841 cgtctggcgg aagatctgcg tttgctttac gtggcgctga cgcgttcggt ttggcattgc
     9901 agtctcggcg ttgcaccgct ggtgcgccgt cgtggcgata aaaaaggtga caccgacgtc
     9961 caccaaagtg cgctcgggcg tttgctgcaa aaaggggaac cgcaagatgc ggcagggctt
    10021 cgcacctgta ttgaagcgtt atgcgatgat gatattgcct ggcaaacggc acaaactggt
    10081 gataaccagc cctggcaggt taatgatgct ttaactgcag aactgaatgc gaggacacta
    10141 caacgattgc ccggcgataa ctggcgtgtc accagctact ccggcttgca gcagcgtggt
    10201 cacggtatcg ctcaggatct gatgccacgg ctggatgttg atgccgcagg cgtggtcagc
    10261 gtcgttgaag aaccgacgtt aacaccgcat cagttcccgc gcggtgcgtc accggggaca
    10321 ttcttgcaca gtttgtttga agacctcgat tttacccagc cggttgaccc gaactgggta
    10381 caggaaaaac tggaactcgg cggctttgaa tcgcagtggg aaccggtgtt gaccgagtgg
    10441 atcacggctg tcctccaggc acctctcaat gaaaaggggg ttagcctgag tcagctttcc
    10501 gaccgcgata aacaggtgga gatggagttt tacctgccga ttagcgaacc gctcatcgcc
    10561 agccagcttg atgcactaat tcgccagttt gatccgctat ccgctggctg cccgccgctg
    10621 gagttcatgc aggtacgcgg catgttaaaa ggctttatcg acctagtatt ccgccacgaa
    10681 gggcgttatt acctgctcga ctataaatcc aactggctgg gtgaagacag ttcggcttac
    10741 acccaacagg ctatggcagc agcgatgcag gcacaccgct atgatctgca atatcagctt
    10801 tataccctgg cgctgcatcg ttatctgcgc catcgcattg ctgattacga ctatgatcgt
    10861 cactttggcg gcgttatcta tctgttcctg cgtggcgttg ataaagaaca tccgcaacaa
    10921 gggatttaca caacccgacc caacgccggg ttgattgccc tgatggatga gatgtttgcc
    10981 ggtatgaccc tggaggaggc gtaatgaaat tgcaaaagca attactggaa gctgtggagc
    11041 acaaacagct acgcccgctg gatgtgcaat ttgccctgac cgtggcggga gatgaacatc
    11101 ctgccgtcac cctcgcggcg gcactgttaa gtcatgatgc cggagaggga cacgtctgtt
    11161 tgccgctttc acgactggaa aataacgagg cgtcgcatcc gctgttggcg acctgtgtca
    11221 gtgaaatcgg tgagctacaa aattgggaag aatgcttgct ggcttctcaa gcggtcagca
    11281 ggggagatga acccacgccg atgatcctct gtggcgatcg tctttatttg aatcgcatgt
    11341 ggtgtaacga gcggacggta gcgcgcttct tcaatgaggt gaatcatgcc attgaggttg
    11401 atgaagctct actggcgcaa accctggaca aactttttcc agtaagcgat gaaattaact
    11461 ggcaaaaagt tgcagcggca gtggcgctga cgcggcggat ctcggtgatt tccggcggcc
    11521 caggcaccgg taaaacgacc accgtggcga agttgctggc agcgttaatt caaatggccg
    11581 acggcgaacg ctgccgtatc cgtctggctg caccaacggg taaagctgcc gcgcgcttaa
    11641 ccgaatctct cggcaaggct ttgcgacagt taccgctgac cgatgaacaa aagaaacgca
    11701 ttccggaaga tgccagcact ttgcaccgat tgctgggcgc gcagccgggt agccagcgtt
    11761 tacgtcatca tgccggtaac ccgctgcatc ttgatgtgct ggtggtagat gaagcgtcaa
    11821 tgatcgatct gcctatgatg tcgagactga tcgacgcctt gcccgatcat gcgcgagtga
    11881 tctttctcgg cgatcgtgat caactggcct cggttgaggc tggggctgtg ctgggcgata
    11941 tctgcgctta tgccaacgcg ggctttaccg ccgagcgtgc caggcagcta agccgcctga
    12001 cggggactca cgttccggca ggaaccggca cagaagcggc atctttgcgc gacagtctct
    12061 gcctgctgca aaaaagctat cgtttcggca gcgattctgg cattggtcag ttagctgcgg
    12121 cgatcaaccg tggtgataaa acggcagtga aaaccgtttt tcagcaggat tttactgata
    12181 tcgaaaaacg acttttacag agcggcgaag attatattgc gatgcttgag gaagctcttg
    12241 cgggttatgg acgttatctg gatctgctgc aagcgcgtgc cgagccggat ttaatcattc
    12301 aggcgttcaa tgagtaccaa cttttgtgcg ccctgcggga agggccgttt ggcgtggctg
    12361 gactgaatga gcgaattgag cagtttatgc aacagaagcg caaaattcat cgtcatccgc
    12421 actctcgttg gtacgaaggt cgaccggtga tgattgcccg taatgacagc gcgcttgggt
    12481 tgtttaatgg cgatatcggt attgcgctgg atcgcgggca ggggacgcgc gtctggtttg
    12541 cgatgccgga cggcaatatt aagtctgtgc aaccgagtcg cttgccagag cacgaaacta
    12601 cgtgggcgat gacggtacat aaatcgcagg gatcggagtt cgaccatgcg gcgttgattt
    12661 taccgagcca acgcacgccg gtagtaacgc gagagctggt atacaccgcg gtgacccgcg
    12721 cgcgtcgccg tctgtcgctg tatgccgatg agcgtatatt aagtgcggca atcgccactc
    12781 gtactgagcg gcgcagtggt ctggcggcgt tgtttagttc gcgggaataa acgtaattgc
    12841 cggatgcgat gcacgagtgt tacgcatgtc gcatccgaca attttcatcg cttaccctaa
    12901 atccgccatc aacactttgg atttacgctg gtagttgtac aactgctttt tgctctcggg
    12961 cagtaaatca atatccaccg gggtaaatcc acgttcctgg aaccagtgaa tactgcgcgt
    13021 ggtcagcaca aacaatttgc ttaagccgct ctgcttcgcc tgagcggcaa tgcgttccag
    13081 cagaacctcg ccccgtgatg aactgcggta atccgggtga actgccacac aggccatttc
    13141 cccaatcttc tcttccggga acggatagag cgcggcgcag gcaatagtcg tgttatcgcg
    13201 ctgaataatg gtgaatttgt cgatttccat ctccagctgc tcgcgagaac ggcgcaccag
    13261 aataccttgc tgctccagcg ggcgaatcaa ctccagaata ccgccaatat cgttgattgt
    13321 tgcgcgacga atctgctcgg cgctttccat cacaatctgc gtaccgatac cgtcgcgtga
    13381 gaacaactct tgcaacagcg cgccatcttc ctgataactg attaaatgac agcgacgcac
    13441 gccgctgcgg caggctttca ctgcgccacg caaaaagcgc accgtaccgg agttgtaatc
    13501 gcctttctct tcctgggctt ctacccgcgc ttgcgcttcg ttagggaaaa gttctgagac
    13561 aatatcaccg tcgtcattag tgacgccctg tgaagagcaa aaaccaatca tcttctcagc
    13621 tttcagtttg atggccagtt gagtggcaat ctcttccgag gtcagattaa agctctcgcc
    13681 agtgactgaa acagcgaccg gccccattag cactattgca ccgctgtcca gttgacgatg
    13741 gatcgcgtct tcatcaatcc gccggatacg cccgctatgg cagtaatcca cgccgtcatc
    13801 gacgcccagc ggctgggcaa taataaaatt gccactgacg acgttgatat gcgcgccctg
    13861 tagcggcgtg ttattgagac tcatcgacag gcgagcagtg atgtccagtt gcaatgttcc
    13921 cgcagcctgc ttcaccagtt ccagtgtttt ggcgtcggtc acacgtatat tcttgtgata
    13981 cagcggttcg tggtgatgcg cggccagatt tgcgtcgatc tgcggacgtg cgccatagac
    14041 caccaccaga cggatgccga ggctgtgcaa caacccgata tcattaacga tactggagaa
    14101 attctcatgc tcaatggctt caccgccgag catgatgaca aacgtttttc cccggtgggt
    14161 attgatatag ggaaccgaat ggcggaatcc ctcgaccagc tcggttttac gttcctttac
    14221 cacggcacac ccctttgcat gattattcta aattagtgta tttttattct gttttttcgc
    14281 agggtgcaag tgtaaatttt atgcgagagc gactttttta tcagtaatgc cgtgaatata
    14341 aaaagaatgt ttaccgttta ttagatgaca gattatgcgt ctttcgctaa agtttccggt
    14401 caaattagtc gtttacttgt tacacagctt agatttcttt tgctcgggag aggcatgtca
    14461 ggatccaaca ctgcaatcag ccgtcgtcgt ttactgcaag gcgcgggtgc catgtggcta
    14521 ttgagcgtaa gtcaggtcag tctggctgcg gtcagccagg tcgtggcggt gcgcgtctgg
    14581 cctgcgtcca gctacacccg tgtgacggta gaatcaaatc gtcagctgaa atataagcag
    14641 ttcgcgttga gtaaccctga acgcgtggtg gtggatatcg aagatgtaaa cctgaactcg
    14701 gtactcaagg ggatggcggc acaaattcgt gcagacgacc cgttcatcaa gtcggcgcgc
    14761 gtcgggcaat ttgacccgca gaccgtacgg atggtttttg aattaaagca aaacgtaaaa
    14821 ccgcagctgt ttgcccttgc gccggtcgcc gggtttaaag agcgtctggt gatggacctc
    14881 tatccggcca atgcacagga tatgcaggac ccgctgctgg cgctgctgga ggattacaac
    14941 aaaggcgacc tcgaaaagca ggtgccgcca gcacaaagtg gtccacaacc gggtaaagca
    15001 gggcgcgatc gtcctattgt tattatgctt gaccctggcc acggcggcga agactccggt
    15061 gcggtgggga aatacaaaac gcgcgaaaaa gacgtggtat tgcaaatagc tcgccgtctg
    15121 cgctctctga tcgagaaaga gggcaatatg aaggtgtaca tgacgcgcaa tgaagacatc
    15181 ttcattccgt tgcaagtgcg cgtagcaaaa gcccagaaac agcgtgctga cctgtttgtc
    15241 tctatccatg ccgacgcctt taccagtcgt cagccgagcg gttcctctgt gtttgcgctc
    15301 tcaaccaaag gtgcaaccag tactgcggca aaatatctgg cacaaaccca gaacgcctcg
    15361 gacttgattg gtggcgtgag caaaagcggt gaccgctatg tcgaccacac catgttcgat
    15421 atggtgcagt cgctgaccat tgccgacagc ctgaagtttg gtaaagcggt actgaataag
    15481 ctcggtaaaa tcaacaagct gcataaaaat caagttgaac aggccgggtt tgccgtacta
    15541 aaggcaccag atattccctc cattctggtc gaaacggcgt ttattagtaa cgttgaggaa
    15601 gagcgtaaac tgaaaacggc gactttccag caggaagttg cggagtctat tcttgcgggg
    15661 attaaagcgt attttgccga tggggcgacg ctggcgagaa ggggatgatg tttttaattt
    15721 attcaatgaa tttatgtttc attgaataaa tattatttac ataaatgttg aacgatggtt
    15781 ttgtgactgc tgtcgaatat ttgaatatcg gcttaaaaaa taagtctgtc atctctttta
    15841 ttaagcacaa ttccgtgtaa ggtatacgca ttagttaatt atcttgcaac tgttaaatca
    15901 ggcaaggcaa tgtttgaagt aattattact tctgacatgc cttgcctttt ttttggggag
    15961 ccatggaatg atcatcgaaa aagtcatgaa caataattgt gtacaggcat cggtgaacgg
    16021 acaggaggtt atcatttctg ggcctggcgt tggttacaat aaaaatatgg tatgtcggtc
    16081 cctgagcatc ctgcaaaccg gatttttatg tcagaaatga gcaaaaaaat aaactctaca
    16141 aattgattga gcatgtgggt attgagtata tttttgttgc cgaaaagata gtgcattatg
    16201 cggagagtaa tctcgaaaaa aaactcaatc catcgctact actgattctt gctgatcaca
    16261 tttcgaatgc aatatcccga gtcgtctcag gcatacaaat taataatgtt ttccttgagg
    16321 aaatcaaagc gttgtacaaa gcagagtatg caataagtcg tgatgcatta acaatcatta
    16381 atgagcaatt tagcgttcaa ctaccggatg atgagattgg ttttatagca ttgcatattt
    16441 taaataatta tgaaaattca gttgattatg aatcagtaag gattattgag ctgtctcaaa
    16501 aaatcacgga gcttattgaa gttgtttata acagaagggt ggacagaagt tcatttaact
    16561 actccagatt tatgatgcac cttaaatatt tttctagtcg tgtgttatgt aatgaaaaaa
    16621 taaaacagaa aaatattggt gatatctatg agcagtttct tgaaaaagat tttcagttac
    16681 aacgtgccat tcatgaaatt gaaagatatc tgtacgcaac ttttaaatat gatttgattc
    16741 tggaagagaa actatatctt tctattcgca tcaaagtatt aatggactaa ttatacataa
    16801 cattttcatg agataaccag tatgaaacaa aagaaatcct ggagtttttt tcagagcctg
    16861 gggaaggcat ttatgtatcc catcgctctg ttaagtgtat gtggtatgat gttagggctg
    16921 ggaagtggtt tagccagcga tgatatggca aaattcattc cagtgttggc tattccgtta
    16981 attaaaacca tacttgattt tattgttagc cttggtttgt ttgccttcgt taatttacct
    17041 gtattgtttg cgatagctat acctttggga ttattaaaag agaaagatga taaagcctat
    17101 ggcgcttttt ctggcttaat tggctttatg gcgatgcatc ttggaacgaa cttttatctt
    17161 aaacagcacg acttattggt agctgctgac caaatgtcga cacatgggca aaccatcata
    17221 ctcgggatcc agtcctacaa taccagcgtg ttgggtggga ttgtggcagg gttattagtc
    17281 gccagcatgt ataaaaagat cgttaactta cgtattcctg aataattagg gttttatagt
    17341 ggcccacgcc ttgtgcctat cattacactg attgtgatga gtggatttgg tctgatcatt
    17401 ccttttatct ggccgccatt tttcaatctt ttcatgctca ttggtcactg gatttcaact
    17461 tccggtcctg ttggttattt cttctatgct gttgccgaac gcgtgacgat accttttggc
    17521 ttaaatcact tggtgacatc agttttccgc tttaccccaa tcggcggatc ggcagtgatt
    17581 ggcggtgaag agtattacgg caccctgaac atgtttatgg catacgtcaa agagaatgcg
    17641 gtcattccgc tggatttggc ggggaaaatg gagcagggca aactgatgat tcagtatggt
    17701 ctggctggag ccgcgctggc gatgtatcgc actgctcatg ctcaaaacag aagggctatc
    17761 aaagcattgc tgatttccgg tgtgctcacg gtaattattg gcggcgtcag cgagccgatt
    17821 gaatttctgt tcttatttgt cagcccgctg ttgtttgtct tccatgcctt tatgaatgga
    17881 ttggctaaca tggttctgcc atatatgggc gtgaagatgg gctttactgg cgatctgatt
    17941 caatttatta gctttggtgt cttacgtggc acaagaacgg gatggccatt agcggtatgt
    18001 gttgaagtgg cttatttctt catttattac tttgtgttcc gttggaccat tctcaaattt
    18061 aacctgatga ctgtaggccg tgaagagtcc agtcctgtca cgctgaacgc tcacgaagaa
    18121 actgcaatag ctaacatccc agttcatgat aaatcagagt tgcaggcagc ggagcaaatg
    18181 gttaaggctc tgggtggtaa agaaaatatt aaatcactgg ataattgtgt aactcgtttg
    18241 cgtttaacta tcgcggatat gggattgata aatgaggctg caataaaaag ggccggagga
    18301 attgcggttg tgaaacttga tcaaaatacc ttacaagtca ttatcggtac aaaagtcatc
    18361 gccctacgtc gggatatgga taattacatg gggatatgtt gatggatatt tttaatacct
    18421 caatttctcg taaaggaaca tattgcacac aatgggactt ttgtgaagac agatttggtg
    18481 taaaagatgt attaccattc tctatttcag atatggatct tccgataccg gaagctatca
    18541 tcagaacatt aaaaaaacgt ctggaacacc cgattttagg gtacagtcgt tggcagcatg
    18601 atgactatct gaattcgata gtcaattggt atcatcaaca atataaaaca gagattcaac
    18661 cagaatggat cacctatagc ccaagcgtga tgtattcaat atctaaggca atagaaatat
    18721 tgacattgaa tggagataat attctcattt tcacgcctgt ttataacgca ttttttgatg
    18781 tgattaagca taatggtcga aacatgctaa caacctcttt gatgaaagaa aatgggagag
    18841 gctacgttat caactggcaa gactttgagc ttaaaattaa aagcgcgaag atggtgttat
    18901 tatgtaatcc tcataacccg acaggaacgg tctggtcgga agacgatctt cacagaatcg
    18961 cagcatgctg tgcaaggcat aatatttggt tatgttcaga tgaaatacat agtgattttg
    19021 tttttaatca tagtttcacg tcagcgctaa caataaaaga tgacaaagtg gtggtgttta
    19081 attcgatttc gaaaacattt aatgttcctg cgctaaccgg atcatatatg atttcaactg
    19141 acgataattt taatcataag ttcagaacga tatcgaggta tcgcgatttc gtaaactccc
    19201 catcagtact gaatgtaatt gcgaccattg ttgcctataa tgaatgtgaa gaatggttaa
    19261 agtcattaaa ggtacatatt gcctctaaca ttcaatttac cttgcagtat ttaaatgaaa
    19321 atattccgga attgatcgta tggccagctg agggctgcta tttttcgtgg gttgattgct
    19381 cggcccttgg ttatcccttt gataaatttt accgtcgatt aattaacgaa gggagagtag
    19441 gtattatggc ggggcatgtt tatggtactg aaggagaggg ctatctgcgt cttaatctgg
    19501 cctgcagtcg agaaaaatta tatatggggc ttgcgcgcct tgcgagtgta attaaaaata
    19561 ttaatcagga aaaagaaaat gaacaatacg gatcttatcc atcttattaa acgttttatg
    19621 cgtaacgaac ataaagcagt agaagaggtt attgattccc ccctttcgga agtcgcgaat
    19681 ttaattaaaa tattacaatc ttgccaggga aaagttgttt ttattggtgt tgggaaatct
    19741 ggcattattg ccagaaaact tgctgcaaca tttgccagca ccggaactcc ctcgtttttt
    19801 gttcacggta cggaagcggt acacggcgac cttgggatgg tggcgaaaga cgatgttgtt
    19861 attcttattt caaacagtgg tgagacggcg gaaatcctgg cgacactgcc tagtttgaaa
    19921 aaaatgggta attatttgat ctcttttatc cgcagtcatc actcatcgct tgcgataagt
    19981 tgtgatttat ctgttgaaat ccccgtcaaa agtgaggcgg ataatttag
//
LOCUS       DAJVUY010000072        19878 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.072, whole genome shotgun sequence.
ACCESSION   DAJVUY010000072 DAJVUY010000000
VERSION     DAJVUY010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19878
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.072"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            57..833
                     /gene="eutC"
                     /locus_tag="OQQ72_002267"
     CDS             57..833
                     /gene="eutC"
                     /locus_tag="OQQ72_002267"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HCS2011976.1"
                     /translation="MTSESCALDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTG
                     RAGPRPRTQALLRFLADHSRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDM
                     GRRLCAEAVEALKAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVG
                     TPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEAD
                     RTCISNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINMTR"
     gene            843..1502
                     /gene="eutL"
                     /locus_tag="OQQ72_002268"
     CDS             843..1502
                     /gene="eutL"
                     /locus_tag="OQQ72_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HCS2011977.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1515..2015
                     /gene="eutK"
                     /locus_tag="OQQ72_002269"
     CDS             1515..2015
                     /gene="eutK"
                     /locus_tag="OQQ72_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HCS2011978.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAAGRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2061..3185
                     /gene="eutR"
                     /locus_tag="OQQ72_002270"
                     /pseudo
     CDS             2061..3185
                     /gene="eutR"
                     /locus_tag="OQQ72_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001735543.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
     gene            complement(3119..4018)
                     /gene="hemF"
                     /locus_tag="OQQ72_002271"
     CDS             complement(3119..4018)
                     /gene="hemF"
                     /locus_tag="OQQ72_002271"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HCS2011979.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWV"
     gene            complement(4022..4891)
                     /gene="amiA"
                     /locus_tag="OQQ72_002272"
     CDS             complement(4022..4891)
                     /gene="amiA"
                     /locus_tag="OQQ72_002272"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HCS2011980.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5105..5530
                     /locus_tag="OQQ72_002273"
     CDS             5105..5530
                     /locus_tag="OQQ72_002273"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311332.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HCS2011981.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5517..5966
                     /locus_tag="OQQ72_002274"
     CDS             5517..5966
                     /locus_tag="OQQ72_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HCS2011982.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFNEEKE"
     gene            6173..6748
                     /locus_tag="OQQ72_002275"
     CDS             6173..6748
                     /locus_tag="OQQ72_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HCS2011983.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFRGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6844..7743
                     /gene="yfeX"
                     /locus_tag="OQQ72_002276"
     CDS             6844..7743
                     /gene="yfeX"
                     /locus_tag="OQQ72_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HCS2011984.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7801..9105)
                     /gene="pbp4b"
                     /locus_tag="OQQ72_002277"
                     /pseudo
     CDS             complement(7801..9105)
                     /gene="pbp4b"
                     /locus_tag="OQQ72_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9110..10534)
                     /gene="murP"
                     /locus_tag="OQQ72_002278"
     CDS             complement(9110..10534)
                     /gene="murP"
                     /locus_tag="OQQ72_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HCS2011985.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10538..11434)
                     /gene="murQ"
                     /locus_tag="OQQ72_002279"
     CDS             complement(10538..11434)
                     /gene="murQ"
                     /locus_tag="OQQ72_002279"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCS2011986.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11598..12455
                     /gene="murR"
                     /locus_tag="OQQ72_002280"
     CDS             11598..12455
                     /gene="murR"
                     /locus_tag="OQQ72_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HCS2011987.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCVEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ72_002281"
     CDS             12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ72_002281"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HCS2011988.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ72_002282"
     CDS             13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ72_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate/sulfate ABC transporter
                     substrate-binding protein CysP"
                     /protein_id="HCS2011989.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ72_002283"
     CDS             14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ72_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HCS2011990.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ72_002284"
     CDS             15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ72_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HCS2011991.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ72_002285"
     CDS             16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ72_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HCS2011992.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHARLYNGDERIETRDEELALAQSA"
     gene            17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ72_002286"
     CDS             17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ72_002286"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HCS2011993.1"
                     /translation="MSTLEQTIGNTPLVKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18538..18906)
                     /locus_tag="OQQ72_002287"
     CDS             complement(18538..18906)
                     /locus_tag="OQQ72_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HCS2011994.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ72_002288"
                     /gene_synonym="thiJ"
     CDS             19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ72_002288"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HCS2011995.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV
                     ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI
                     LPPLAEA"
BASE COUNT         4576 a         5042 c         5610 g         4650 t
ORIGIN      
        1 aaacggcccc cgcgctgtca gaagcaaagt gcaccaccac cacctgtgcg gcaccggtga
       61 cctcggaaag ctgcgcgctg gatttaggtt ctgcggaagc aaaagcgtgg attggtgttg
      121 aaaacccgca tcgcgcagac gtattaacag aactgcgtcg cagcaccgtg gcccgcgttt
      181 gtaccggtcg tgccggtccg cgtccgcgta cccaggcgtt gctgcgtttc ctggccgatc
      241 actctcgttc gaaagatacc gtactgaaag aagtgccgga agagtgggtg aaagcgcagg
      301 gcttgctgga agtacgctcc gaaattagcg acaaaaatct ctacctgact cgcccggata
      361 tgggccgccg cctgtgtgca gaagctgttg aagcgctgaa agcacagtgt gttgctaatc
      421 cggacgtaca ggtcgttatt tctgatggcc tgtcaactga tgccatcacc gtgaactacg
      481 aagagatcct gccgccgctg atggcgggcc tgaaacaggc cgggctgaaa gtcggcacgc
      541 cattctttgt tcgttatggt cgcgtgaaga ttgaagatca gatcggtgag atcctcggcg
      601 cgaaagtggt gatcctgctg gtgggggaac gtccggggtt gggtcagtca gaaagcctct
      661 cctgttacgc cgtttactcg ccgcgtatgg cgaccaccgt tgaggccgat cgcacctgca
      721 tctctaacat tcaccagggc ggcacgccgc cggttgaagc cgcagccgtc attgtggatt
      781 tggcgaaacg tatgctggag cagaaagcat ccggcatcaa catgacccga taaggaggca
      841 tcatgccagc tttagatttg attcgaccgt cggtaaccgc catgcgggtg attgcctccg
      901 ttaacgctga atttgcgcgt gaactaaaat tgccgccgca tattcgtagc ctcgggctga
      961 tttctgctga ttccgatgac gtcacctaca ttgcggctga cgaagcgacc aagcaggcga
     1021 tggtcgaagt ggtatatggc cgctcgctgt atgcgggagc agcacacgga ccgtcaccga
     1081 ctgccggtga agtgctgatt atgcttggtg ggccaaaccc ggcggaagtg cgtgctggtc
     1141 tggatgcgat ggttgcgcat attgaaaatg gcgctgcttt ccagtgggct aatgacgcag
     1201 aaaacaccgc attcctggca catgtagttt cgcgtaccgg ttcttatctc tcatcaaccg
     1261 ccgggatcac gcttggcgat ccgatggcgt atctggtggc accgccgctg gaagcgacct
     1321 acggcattga tgcagcgttg aaatctgccg acgtacagct ggtgacctat gtcccgccac
     1381 cgtctgaaac caactactcg gcagcatttt taaccggtag ccaggccgcg tgtaaagcag
     1441 cctgtaacgc ctttaccgat gcagtgctgg aaatcgcgcg taatccaatc cagcgtgcgt
     1501 aacggaggtt gccgatgatc aatgcactgg gattgctgga agtggacggc atggtcgccg
     1561 cgatagatgc agcggatgcc atgctcaaag cagctaacgt tcgtctgctc agtcacgaag
     1621 tgcttgaccc tggtcgctta acgctggtgg tggaaggcga tctggcggcg ggtcgtgcgg
     1681 cgctggacgc aggttgtgct gccgcgatgc gtaccgggcg tgtcatcagc cgcaaggaga
     1741 tcggtcggcc agacgatgac acccagtggc tggttactgg ctttaaccgc cagccgaagc
     1801 aacccgtaag ggaacccgac gcgccagtta tcgtcgcgga atctgctgac gagttgttgg
     1861 cgctgttaac atcagtacgt cagggaatga cggcaggaga agtggctgcc cactttggct
     1921 ggccgctgga aaaagccaga aatgcgctcg aacagctctt ttctgccggg acgttacgta
     1981 aacgcagtag tcgttatcgt ctcaagcccc attaacctgt cggaggtgct gggtgtccta
     2041 caacacccgg cattaacatc atgaaaaaga cccgtacagc caatttgcac catctttatc
     2101 atgaaccctt acccgaaaac ctgaagctca cgccgaaggt cgaagtggat aatgttcatc
     2161 aacgacagac aacggatgtc tatgaacatg ctttaacgat taccgcctgg cagcagattt
     2221 acgatcagct gcatccgggc aagtttcatg gtgaatttac ggaaattcta ctcgatgata
     2281 ttcaggtttt tcgtgaatac accggtctgg cgctgcgtca gtcgtgcctg gtctggccga
     2341 actcgttctg gtttggcatt ccggcgacgc gcggtgagca gggatttatc ggttcgcaat
     2401 gtctgggaag cgcggaaatc gccacccgcc ctggtggcac tgaatttgaa ctgagcacgc
     2461 cggatgatta cacgatcctg ggcgtggtgc tttctgaaga tgtcatcacc cggcaggcta
     2521 actttttgca taacccggat cgggtattac atatgctgcg tagccagtcg gcgctggaag
     2581 tgaaagagca gcataaagcc gcgctgtggg gctttgtcca acaggcgctg gcgacgtttt
     2641 gcgagaaccc ggaaaatctc catcagcctg cagtgcgaaa agtgctgggg gataatttgc
     2701 taatggcgat gggggcgatg ctggaagacg cgtaaccaat ggtgacggcg gaaagcatca
     2761 gtcatcagag ttaccgtaga ttactttccc gcgcccgtga atatgtgctg gaaaatatgt
     2821 ctgagccggt gacggtgctg gacttgtgta atcaactgca tgtcagtcgc cgcacgctac
     2881 aaaacgcgtt tcacgctatt ttaggcattg gcccaaacgc gtggctgaaa cgcattcgcc
     2941 tgaacgccgt acgccgcgaa ctgataagcc cgtggtcgca aagcacaacg gtaaaagacg
     3001 ccgccatgca gtggggattc tggcatctgg ggcaatttgt cacggattac cagcagctgt
     3061 ttgccgagaa gccgtcgttg acgttgcatc agcggatgcg ggaatggggg ggagggagtt
     3121 acacccaatc cctgacctta ataaactcac ttaacgccgc ttctgggctg ccatcttttg
     3181 gctgataatc atactcccag cgtaccagtg gcggcattga catcaggatc gactcggtgc
     3241 gcccgccagt ttgcaggcca aacagagtgc cgcgatccca gaccagattg aactcgacat
     3301 aacgaccgcg acggtagagc tgaaaattgc gctcgcgctc gccgtaggcc attgctttac
     3361 gtcgctctac aattggtaaa taagcgtcgg tgtagccttt gcctaccgcc tgcataaagg
     3421 caaaacagtg gtcgaaatct ggcgtgttca gatcatcaaa gaacagcccg ccaataccgc
     3481 gctgttcgtt gcgatgtttg aggtagaagt aatcgtcgca ccactttttg taacggggat
     3541 aaacgtcttc accaaatggc aggcacaggt cacgggcggt gcggtgccag tgaatggcgt
     3601 cttcttcaaa accatagaaa ggggttaaat cgaagccgcc gccaaaccac cagacgggct
     3661 ctgcacccgg tttttcggca ataaaaaaac gcacattcgc gtggctggtg ggaacatacg
     3721 ggttatgcgg atgcactacc agtgaaacgc ccatcgcctc gaaactgcgc ccggcaagtt
     3781 ccgggcgatg agcggtggcg gaagcaggca tcgcctcgcc gtggacgtga gaaaagttga
     3841 cgcctgcctg ttcgaaaaca ccaccattac gcaacacccg actacgcccg ccgccgccag
     3901 cttcgcgctg ccaactatct tcgacaaatt ctgcgccatc gacggcggtc agctgctgac
     3961 aaatcgtatc ctgaaggttg agcagaaact gtttaacctg gtgtgcgtcg ggtttcataa
     4021 cttatcgctt tttcgaatgt gctttctggt tgtcgaacca gtggaaataa ctgatcacgc
     4081 cttcagcaat cgctgtggcg attttctgac gaaacgccgc cgtgcctaac agccgctctt
     4141 cttccgggtt ggtgataaac gaggtttcca ccagcaccga aggaaccgac ggcgatttca
     4201 acaccacaaa cgcggcttgt tcggtgttgc ggctgtgcag tttatgcacc ggcttaatct
     4261 ttttcagaat atgcgagcca agcgtcaggc tgtttttaat agtatcggtt tgcaccagat
     4321 caaacagcac ttgctgcaat aggtgatcct tgtcagtcgc ctttttaccg gcaacttcat
     4381 cggcgcggtt ttcgcgttca gacaggtatt tcgccattgc gctacttgcc ccacggttag
     4441 agagggcaaa taccgaagca ccggcagctt tcgggttggt aaagccatcg gcatgaattg
     4501 acataaacag atctgcgcca tgtttatggg cgatttcaac gcgatcgtaa agtgggataa
     4561 acgtatcgcc agaacgcgtt aaacgcgcat caatcccatg attacgcaaa atggaacgga
     4621 cgtttttagc aatcgccagc accacatgtt tttctttcga accgttgcgt ccgatcgctc
     4681 cggtatcaat tccgccgtgg cctggatcga gaacaacgac acgtttgccg ccagattttt
     4741 tggctttcgg cttgctgtgt ccgttgctgg tttttaaagg ttcgtctttg gcgatggctt
     4801 gcgacattcc tgacaacgtc agggcagcca aaccggcttt cagcacctgg cggcgcgaag
     4861 tgagtgtttt tagtggttta aaagtgctca tacggcctga gttgtaataa taaagttcca
     4921 gatgttatat cgtatcgcgt aatccgttac gacggtttga tgttgagaat tgttttactt
     4981 ttcatttcaa tagttgacaa ctccccatta tgccactttt tcaaccgatt ttcgtcagat
     5041 attggctaat tctaccgttc acgccataat cagcctttta acccgcaaaa aggtaacgaa
     5101 taccatggag atacgcgtat ttcgccagga agatttcgaa gaggtcatca ccctttggga
     5161 gcgttgcgac ttgctgcgtc cgtggaacga tccggaaatg gacatcgagc gtaagatgaa
     5221 ccatgacgtc agtttgtttt tggtcgctga ggtgaacggt gaagtggtcg gaacggtgat
     5281 gggcggttat gacgggcatc gcgggtctgc ttattatctt ggcgtgcatc cagagtttcg
     5341 tgggcgtggg attgccaatg cgttgcttaa tcggctggag aaaaagctga ttgctcgtgg
     5401 ctgcccgaaa attcagatca atgtgccgga agataacgac atggtgctcg gaatgtatga
     5461 acgcctggga tatgaacacg ccgacatgct gagtctgggt aagcgtttga ttgaagatga
     5521 agagtactga gttccatcct gtccattatg atgcgcacgg acgcctgcgt ttacccttgc
     5581 tcttctggct tgtgctattg cttcaggcgc gaacctgggt gctgtttatc attgccggtg
     5641 cgtcgcgcga gcagggtact gcgctgctaa atctgtttta tcccgatcac gataatttct
     5701 ggctggggtt gattcccggt attccggcgg tgctggcgtt tttgttgagc ggtcggcggg
     5761 cttcgtttcc tcgcacctgg catgtgctct attttctgtt gctgttggcg caggtggttt
     5821 tactttgctg gcaaccgtgg ctgtggctga acggtgaatc cgttagcggt atcggtctgg
     5881 cgctggtagt ggcggatatt gtggcgttaa tctggctgct gaccaatcga cgtttacgcg
     5941 cttgttttaa tgaagaaaaa gaataacgca gaggtgcgct ttgtttatgc cggatgcggc
     6001 gtgaacgcct tatccggcct acaaaacatc gaaaattcaa tatattgcag gagaaagtag
     6061 gcctgataag cgtagcgcat caggcaattt tgtgtttgtc atcaaccttt aacggcactt
     6121 tttggtgaat ttgcactcca agcaacgtta ttgaataacc aaaggaagtg acatgaaatc
     6181 gctgcgttta atgttatgcg ctatgccgtt gatgctgacc ggctgttcca cgatgtcgtc
     6241 agttaactgg tcggctgcta acccgtggaa ctggtttgga tcgtccacca aagtgagcga
     6301 gcagggtgtg ggtgaattaa cggcgtccac accactgcaa gaacaagcca ttgctgatgc
     6361 gcttgatggc gattatcgcc tgcgcagcgg aatgaaaacc gcgaacggca acgtggtgcg
     6421 cttttttgaa gtgatgaaag gcgacaacgt ggcgatggtg attaacggcg atcaaggcac
     6481 gatcagtcgc attgacgtgc tggatagcga tattcctgct gacaccggtg ttaaaatcgg
     6541 tacaccgttt agcgaccttt acagcaaagc atttggcaat tgccaaaaag ctgatggtga
     6601 tgataatcgt gccgtcgaat gtaaagccga aggcagtcaa catattagct accagttcag
     6661 aggggaatgg cgtggtcctg aagggttaat gccttcggac gataccctga aaaactggaa
     6721 agtcagtaaa attatctggc ggcgttaatt tgcgtctgaa caaaccgccg ccgcgaaaaa
     6781 acacgtaaaa tagcgctcaa caatgccacg gattgcgtgg cattcttatt ttcaggagga
     6841 acaatgtctc aggttcagag tggcattttg ccagaacatt gccgcgcggc gatttggatc
     6901 gaagccaacg tgaaagggga agttgacgcc ctgcgtgcgg ccagtaaaac atttgccgac
     6961 aaactggcaa cttttgaagc gaaattcccg gacgcgcatc ttggtgcggt ggttgccttt
     7021 ggtaacaaca cctggcgcgc tctgagcggc ggcgttgggg cagaagagct gaaagatttt
     7081 ccgggctacg gtaaaggcct tgcgccgacg acccagttcg atgtgttgat ccacattctt
     7141 tctctgcgtc acgacgtaaa cttctctgtc gctcaggcgg cgatggaagc ctttggtgac
     7201 tgcattgaag tgaaagaaga gatccacggc ttccgttggg tggaagagcg tgacctgagc
     7261 ggctttgttg acggtacaga aaacccggcg ggtgaagaga cgcgccgcga agtggcggtt
     7321 atcaaagacg gcgtggatgc cggcggcagc tatgtgtttg tgcagcgttg ggagcacaac
     7381 ctgaagcagc tcaaccggat gagcgttcac gatcaggaga tgatgatcgg gcgcaccaaa
     7441 gaggccaacg aagagattga cggcgacgaa cgtccggaaa cctctcacct cacccgcgtt
     7501 gatctgaaag aagatggcaa agggctgaag attgttcgcc agagcctgcc gtacggcacc
     7561 gccagtggca ctcacggtct gtacttctgc gcctactgcg cgcgtctgca taacattgag
     7621 cagcaactgc tgagcatgtt tggcgatacc gatggtaagc gtgatgcgat gttgcgcttc
     7681 accaaaccgg taaccggcgg ctattacttc gcgccgtcgc tggacaagct gatggcgctg
     7741 taagcgtttc tgattctatg attaaaggcc agccagtaac aaaactgact ggccttttta
     7801 ttacttttgc ttcaacgccg catacacctg atcaactacc caaccataag ttgcaatcgg
     7861 taactgaccg ctttcgaaca tattgggatt tttttgtgga tcggcaactg gcgaatgggg
     7921 cttgttgctt aacatcacaa tcgccatatg attgaccgga tcgataacgg ttactgtccc
     7981 ggtccagcca gtgtgaccgt aggtttgcgg gcttgccagc gtgccaaacg tcggcgtcat
     8041 ggtggcatta ccattcacgc gccagccgag gccaaaagtg gcatcttcct tagagctggt
     8101 ggtgaacatc ttcaccgttt ccgcactgaa cagctgcaca tcgccatagc ccccgccgtt
     8161 cagcatcgtt tgcattaaca ccgcaatatc gccggtattg gaaaacaaac ctgcgtgccc
     8221 ggaaacgccg cccatcgaat aaaaggcttt ttcatcgtgc acctgacccc agagagtgga
     8281 ggtgcggata ttcgggaaat ggatcacgcc atcgcgggta ttgccgttca attccgtggc
     8341 ggcaatttgt tgcggtttaa agcctttcag cagcgggtta aataccgtat gtgtcaggcc
     8401 gagcgggcga taaatcgact cttcaacata gcggtcaagc ggctgaccgg taaccgactc
     8461 gacgataaat ccaagcagca tataatcgac atcgctgtag atatgtttgc tgccgggctg
     8521 atattccagc ggcgtgcgct tgatcatctc cagcgtctgg cctttatcct aggaatataa
     8581 cgcgcccgcg accgctttat tcgggtattg cggatctgcc gggaaaccgc cgctgtgatg
     8641 cagcaggtca gaaatccgca gggtgttttt gcctttaatg gtgtcatttg gactatcggc
     8701 aaaccccgga atatatttcg caatccgatc gtcaggatgc agtttgcctt cgctcatcag
     8761 cttttgcagg gcgaagttcg tggcgtacat tttggtgttt gaggccaggt catacagcgt
     8821 cccggtggtg gctttgacag gctgttccat caacacgctg ccatcgtact ttttcgccgc
     8881 tccccaggct ttgcgataca caatctgatt atctttaatg atcagcaggt ttacgccggg
     8941 ataaccggca tcaacttgct ggctaatcca gcgatccatc tggttaagcc gtttgacgtt
     9001 aaaccctgct ttctctggcg agctttctgt cagaacaggg tattttgcgg cgctgacgct
     9061 acaactaaca gccagcagag aaagatagag cattgtccgt ttcatgatat cagtccagat
     9121 tgacgttacg gcagccaaag agcgtggtga aaataaaccc gcaaacccat gccaccagaa
     9181 tcccgccagc ataaaccgcc atggccggaa ggatgccttg tgcggaagtc atcagcggca
     9241 gcgctaccag accagacggc ccaaaggcgc tgtttaagcc catcggcaga ccccaccagg
     9301 ctatcaggcc gataaacaaa ccgcccgccg caccgcctaa acaggcggtg acaaacggct
     9361 tcatgcgggg cagggtgaca ccgtaaatca gcggttcacc aacgcccagc aggccgggaa
     9421 taatcgcccc gcgtacctga ctgcgtagcg cactgtgcgg ttgcgaccgc cagtagagtg
     9481 ccagcgccgc gcccacctgg cccgcgcctg ccattgaaag gatgggaaat aagctgttga
     9541 atccctggct gtccattaac gcgaggtaaa caggaataaa gccctgatgc acgccaaata
     9601 ccacggcgat caggaacagc ccggctaaaa ccgcacaacc gaacggatta ctgttcaggt
     9661 gcataaacag ccatgacata ccttcgaata accagccacc cagcggcata atgatcaggt
     9721 acgcaagcgt agcggtgatc agcagggtga ttaacgaggt cagcagcatg tcgagatcgt
     9781 ccggcataaa gcggcgcacc atgccttcaa tgcgggcgca ggcccacgcg gcaatcagca
     9841 cgccgataat attgccgcgc ggatcgatgg gcagaccaaa gaaatcgtga aaaccggcgt
     9901 agtaaccggt ggttgcagcg gggttataac cgagcaaaaa gagtgcggca ataattgcgc
     9961 cattgacgcc cgtgccgcca aatgcctggg cggcgttata gcccaccaga atcaccagga
    10021 aggtgaacaa acctttgctg aacaccttca taaaattcag cgcgtcgggt agcgtgccct
    10081 gagcatctgc cggaacgtgc atcaccgtgg caattaacgt cgctatcccc agcagcagac
    10141 cggcggcaat aaaaccgggg atcagcggcg tgaagatggt ggcgaatttg gcgagaaatt
    10201 gttgcacgcc ggaggtttgt ttggctttta actgacgttt gttctgggcg gcgatttctg
    10261 cggcatcctg taccggtgcc tcgcccagca gctcgctcat cgcttttgcg gcacgatgcg
    10321 ctttaccagg tccaaaaacg acctgcacct ggtcgctggt caaaatgacg ctcttcacgc
    10381 cttccagcgt tttgatattg ggatcaacca gtgaactgtc atgtacaccc agacgcaggc
    10441 gcgtcataca gttaccacaa ctggcgatat ttcccggtcc gccgacacgg gtaagaatgg
    10501 tgttcagaag ttcactgctg atctctttgg ccatgggtta ttccttgtct aaaacctgac
    10561 gaataaagcc gccgtgttga tccaggcgtt ttttagcttc tgcggcatcg agatttttca
    10621 gcaccatcac aatggccgtt ttacagttgc gctcgcaggc aattaacgcc gcttccgctt
    10681 gttcggcatt acatccggtg gcgtttttaa cgatattgac ctggcgcaca tgcagttttt
    10741 cgttggtggc gaccacatcg accataaggt tgccgaacac tttgccggat ttaatcatca
    10801 gcccggtgga aagcatattg agcaccagtt tctgcgctgt acctgctttc atccgcgaag
    10861 aaccggtaac aacttcggca cctacaatcg gtgtaatggc aaactcagcg gtggttgaaa
    10921 cggcgctccc cggattacag gaaattccca ctgtgcggca gccgagctgg cgtgcgtatt
    10981 ccagtccggc aatcacatac ggcgtgcgac cgctggcagc aatgccaacc accacatcct
    11041 gtgccgttaa attaatattt ttcagatcat taacaccgcc ttcccggcta tcttccgcgc
    11101 cttccaccgc gtgctgaatg gcatattcgc cgccagcaat caaaccaacc accagacccg
    11161 gtttcacgcc gtaggtgggc ggacattcgc tggcatccag aatccccaga cgaccggatg
    11221 ttcccgcacc gaggtaaatc agacgcccgc cgccgcttac ctgggcgtgg ataacatcga
    11281 tcgccgcggc gatatccggc agtacgcgct caacggcaag cggtacggtt ttatcttcat
    11341 cgttgataat ccggcacatt tccagcgttg atacgcggtc aatttcagcc gaggcggcgt
    11401 tcgagccttc agtaatcatc ttttcaagtt gcatcggtgg tgaccttact atttacgatc
    11461 aaataattgc agatgtatgg aatcatatat cctgaattga cagacttaaa ggaatcattg
    11521 agtctacact cgcagagtgt gaagagcgtc ataagaactt aagcggaatt tatgctgcca
    11581 gcccaggaga gtggaagatg ttgtacctga cgaaaataag caatgcgggg agtgaattca
    11641 ccgaaaacga gcaaaaaatc gctgactttc tgcaggccaa cgtgagtgag ctgcaatccg
    11701 tttcttcacg gcagatggcg aaacagctcg gcattagcca gtcgagcata gtgaaatttg
    11761 cccaaaaact cggcgcgcaa ggatttactg aattgcgtat ggcgttaata ggcgaataca
    11821 gtgctagccg ggagaaaacg aataccacgg cgctgcacct gcacagttcg attaccagtg
    11881 atgattcgct ggaagtgatt gcccgcaaat tgaatcgcga aaaagagctg gcgctggagc
    11941 aaacctgtgc gttgttcgac tacgcgcggc tgcaaaaaat cattgaggtc atcagtaaag
    12001 caccgtttat ccagataacg ggcctgggcg gatcggcgct ggtggggcgc gatctgtcgt
    12061 tcaaactgat gaaaattggc tatcgcgtgg cctgcgaagc cgacacgcac gtacaagcca
    12121 ccgtttccca ggcgttgaaa aaaggcgatg tacaaatcgc tatctcttac agcggtagta
    12181 aaaaagagat tgtcttgtgc gtagaagcgg cacgaaagca gggggcaacg gtgattgcca
    12241 ttacttctct ggctgactct ccgctgcggc ggctggcgca tttcacgctc gataccgttt
    12301 ccggtgaaac cgaatggcgt agctcgtcga tgtctacccg cacggcgcaa aattctgtta
    12361 ccgatttact gtttgttggt cttgtgcaac tcaatgatgt ggcgtcattg aaaatgattc
    12421 agcgcagcag tgagctaaca caacgcctga aatgatgcat aaagcagcga ctggattgag
    12481 attttcctga attagtgagc tgatccgcag caatattttg tttatcctgt attttcagag
    12541 ggaatggagt gtaacgctct gtattaacaa ggagagcatt aaaatgggta aactcacggg
    12601 caagacagca ctgattacgg gcgcattgca gggaattggc gaaggaattg ccagaacttt
    12661 tgcacgtcat ggcgcgaacc taatcttgct ggatatctcc cctgagatcg aaaagctggc
    12721 ggacgaactg tgtggtcgtg gtcatcgctg tacggcggtt gtcgccgatg tgcgtgaccc
    12781 ggcgtcggta gccgcagcta tcaaacgcgc gaaggaaaaa gaagggcgca ttgatatcct
    12841 ggtgaataac gcaggcgttt gtcgtctggg cagtttcctc gatatgagcg atgacgatcg
    12901 cgatttccat attgatatca atattaaagg cgtatggaac gtcacgaagg cggtgctgcc
    12961 ggagatgatt gcgcgcaaag atggtcgcat tgtgatgatg tcttcagtca ctggtgatat
    13021 ggtggccgat cctggcgaaa cggcgtacgc cttaacgaaa gcggcgattg ttggcctgac
    13081 aaaatcgctg gcggtggagt acgcgcagtc tggtattcgc gttaacgcca tttgcccggg
    13141 atacgtgcgc acaccaatgg cggaaagcat tgcccgccag tcgaacccgg aagatccaga
    13201 gtcggtgctg actgaaatgg cgaaagcaat cccgatgcgt cgcctcgccg atccgctgga
    13261 agtcggcgaa ctggcggcct tcctcgcatc ggatgaatcc agctatttaa ccggtacaca
    13321 gaatgtgatt gatggcggca gcacactgcc ggagacggtt agcgtcggta tctgattcac
    13381 ctctgtttcc tccctgcatg tgtggggagg atttcgtctt gaactaagtt caccaggcta
    13441 ttttatttgt cattttggcc ccgggcagtg ctcgaaatac tcacgtacta tgtgtacgct
    13501 ccggtttctc cgcgctgtcc gtgtccaaac tgcctgcaac aattacgcct gttgaaccaa
    13561 gttcttattc cctttttaac ttccaaatca ccaaacggta tataaaaccg ttactccttt
    13621 cacgtccgtt ataaatatga tggctattag aaagtcatta aatttataag ggtgcgcaat
    13681 ggccgttaac ttactgaaaa agaactcact cgcgctggtc gcttctctgc tgctggcggg
    13741 ccatgtacag gcaacggaac tgctgaacag ttcttatgac gtctcccgcg agctgtttgc
    13801 cgccctgaat ccgccgtttg aacagcaatg ggcaaaagat aacggcggcg acaaactgac
    13861 gataaaacaa tctcatgccg ggtcatcaaa acaggcgctg gcaattttgc agggcttaaa
    13921 aaccgacgtt gtcacttata accaggtgac cgacgtacaa attctgcacg acaaaggcaa
    13981 gctgatcccg gctgactggc agtcgcgcct gccgaataat agctcgccgt tctactccac
    14041 catgggcttc ctggtgcgta agggcaaccc gaagaatatc cacgactgga acgacctggt
    14101 gcgctccgac gtgaagctga ttttcccgaa cccgaaaacg tcgggtaacg cgcgttatac
    14161 ctatctggcg gcatggggcg cagcggataa agctgacggt ggcgacaaag ccaaaaccga
    14221 acagtttatg acccagttcc tgaaaaacgt tgaagtgttc gatactggcg gtcgtggcgc
    14281 gaccaccact tttgccgagc gcggcctggg cgatgtactg atcagcttcg agtcggaagt
    14341 gaacaacatc cgtaaacagt atgaagcgca aggctttgaa gtggtgattc cgaaaaccaa
    14401 cattctggcg gaattcccgg tggcgtgggt cgataaaaac gtgcaggcca acggtacgga
    14461 aaaagcagca aaagcctacc tgaactggct ctacagcccg caggcgcaga ccatcatcac
    14521 cgactattac taccgcgtaa ataacccgga agtcatggac aaactgaaag ataaattccc
    14581 gcagaccgag ctgttccgcg tggaagacaa atttggctcc tggccggaag tgatgaaaac
    14641 ccacttcacc agcggcggcg agttagacaa gctgttagcg gcggggcgta actgatgttt
    14701 gcagtttcat caagacgcgt gctgccgggc tttaccttaa gcctcggcac cagtctgctg
    14761 tttgtgtgcc tgattttgct gctgccgctc tccgcgctgg tgatgcagct ggctcagatg
    14821 agctgggcgc agtactggga ggtgatcacc aacccacaag tggtcgcggc ctacaaagtg
    14881 acgctgctgt cggcgtttgt ggcatcgatt tttaacggcg ttttcggtct gctgatggcg
    14941 tggattttaa cacgttatcg ctttccgggc cgcacgctgc ttgatgcgct gatggattta
    15001 ccctttgcgc tgccaacggc agtcgccggt ttaacgctgg cctcgctctt ttccgtaaac
    15061 ggtttttacg gtgaatggct ggcgaagttt gatatcaaag tcacctatac ctggcttggt
    15121 attgcggtgg cgatggcctt taccagcatt ccgtttgtgg tgcgtaccgt gcagccggtg
    15181 ctggaagagt taggcccaga atatgaagaa gcggcggaaa cgcttggtgc aacgcgctgg
    15241 cagagtttct gcaaagtggt gctgccggaa ctttctccag cgctggtggc gggcgtggcg
    15301 ttgtcgttta cccgtagtct tggtgagttt ggcgcggtga tatttatcgc cgggaacatc
    15361 gcttggaaga cggaagtgac gtcgctgatg atttttgtgc gcttgcagga gtttgattac
    15421 ccggcggcga gcgcgattgc ttcggtgatc ctcgcggcat ccctgctgct gctgttctca
    15481 attaacactc tgcaaagtcg ctttggtcgg cgtgtggtag gtcattaatg gcggaagtta
    15541 cccaattgaa gcgttatgac gcgcgcccga ttaactgggg caaatggttt ctgattggca
    15601 tcgggatgct ggtatcggcg ttcatcctgc tggtgccgat gatttatatc ttcgtacagg
    15661 cgttcagcaa agggctgatg ccggttttac agaatctggc cgatccggac atgctgcacg
    15721 ccatttggct gacggtgatg attgcgctga ttgccgtacc ggtgaacctg gtgttcggca
    15781 ttctgctggc gtggctggta acgcgcttta acttccccgg acgccagtta ctgctgacgc
    15841 tactggacat tccgtttgcc gtatcgccgg tagttgccgg tctggtgtat ctgctgttct
    15901 acggctctaa cggtccgctg ggcggctggc tggatgaaca taatttgcag attatgttct
    15961 cctggccggg aatggtgctg gtcaccatct ttgtgacctg tccttttgtg gtgcgcgagc
    16021 tggtgccggt gatgttaagc cagggcagcc aggaagacga agcggcgatt ttgcttggcg
    16081 cgtctggctg gcagatgttc cgtcgcgtca cattgccgaa cattcgctgg gcgctgctgt
    16141 atggtgtggt gctaaccaac gcccgcgcga ttggcgagtt tggtgcggtg tcggtggttt
    16201 ccggctcgat tcgcggcgaa acactttcgc tgccgttaca gattgaattg ctggagcagg
    16261 actacaacac cgtcggctcc tttaccgccg ccgcgctgtt gacgctgatg gcgattatca
    16321 ccctgttttt aaagagtatg ttgcagtggc gtctggagaa tcaggaaaaa cgcgcgcagc
    16381 aggaggagca tcatgagcat tgagattgcc aatattaaga agtcgtttgg tcgcacccag
    16441 gtgctgaacg atatctcact ggatattcct tctggtcaga tggtcgcgct gctggggccg
    16501 tccggttccg gaaaaaccac gctgctgcgc attattgccg ggctggagca tcaaaccagc
    16561 gggcatattc gcttccacgg taccgacgtg agccgcctgc acgcacgcga tcgtaaagtc
    16621 ggtttcgtgt tccagcatta cgcgctgttc cgtcatatga cggtgttcga caatatcgct
    16681 tttggcctga cggtgctgcc acgtcgcgag cgcccgaatg ccgcagccat caaagcgaaa
    16741 gtgacaaaat tgctggagat ggtccagctt gcgcatctgg cggatcgtta tccggcacag
    16801 ctttccggcg gccagaaaca gcgcgtggcg ctggcgcgcg cgctggctgt tgaaccgcaa
    16861 attctcctgc ttgatgaacc gtttggcgcg ctggatgcgc aggtgcgtaa agagctgcgt
    16921 cgctggctgc gtcaactgca tgaagagctg aaattcacca gcgtgttcgt gacccacgac
    16981 caggaagaag cgaccgaagt agctgatcgt gtagtggtga tgagccaggg caatatcgag
    17041 caggctgatg cgccggacca ggtatggcgc gaaccagcga cccgatttgt gctcgaattt
    17101 atgggcgaag tgaaccgcct gcagggaacc attcgcggcg ggcagttcca tgttggcgca
    17161 catcgctggc cgctggggta tacgcctgcg tatcaggggc cggtggatct cttcctgcgc
    17221 ccgtgggaag tggatatcag ccgccgtacc agtctcgatt cgccgctgcc ggtacaggta
    17281 ctggaagcca gcccgaaagg tcactacacc caattagtgg tgcagccgct ggggtggtac
    17341 aacgaaccgc tgacggtcgt gatgcatggc gacgatgccc cgcagcgtgg cgagcgttta
    17401 ttcgttggtc tgcaacatgc gcggctgtat aacggcgacg agcgtatcga aacccgagat
    17461 gaggaacttg ctctcgcaca aagcgcctga taggttgagt gaatgttaaa cgcccggagg
    17521 cgcttcccgc gatccgggct ttttaatggc aaggtttgta acctgtagac ctgataagac
    17581 gcgcaagcgt cgcatcaggc aacaccacgt atggatagag atcgtgagta cattagaaca
    17641 aacaataggc aatacgcctc tggtaaagtt gcagcgaatg gggccgaata acggcagtga
    17701 agtctggttg aaactggaag gcaataaccc ggcaggttcg gtgaaagatc gtgcggcact
    17761 ttcgatgatc gtcgaggcgg aaaagcgcgg ggaaattaaa ccgggtgatg tgttaatcga
    17821 agccaccagt ggtaacaccg gcattgcgct ggcaatgatt gccgcgctta aaggctatcg
    17881 catgaaattg ctgatgcccg acaacatgag ccaggaacgc cgtgcggcga tgcgtgctta
    17941 tggtgcggaa ctgattcttg tcaccaaaga gcagggcatg gaaggtgcgc gcgatctggc
    18001 gctggagatg gcgaatcgtg gcgaaggaaa gctgctcgat cagttcaata atcccgataa
    18061 cccttacgcc cattacacca ctaccgggcc ggaaatctgg cagcaaaccg gcgggcgcat
    18121 tacccatttt gtctccagca tgggaacaac cggcactatc accggcgttt cacgctttat
    18181 gcgcgaacaa tccaaaccgg tgaccattgt cggcctgcag ccggaagaag gcagcagtat
    18241 tcccggcatt cgccgctggc ctgcggaata tctgccgggg attttcaacg cttctctggt
    18301 ggatgaggtg ctggatattc atcagcgcga tgcggaaaac accatgcgcg aactggcggt
    18361 gcgggaagga atattctgtg gcgtcagctc aggcggcgcg gttgctggag cactgcgggt
    18421 ggcaaaagct aaccctggtg cggtggtggt agcgatcatc tgcgatcgtg gcgatcgcta
    18481 cctctccacc ggagtgtttg gggaagagca ttttagccag ggggcgggga tttaagatta
    18541 ttgcgcaggc accgttttat ccgtctgcgc aattagcgca tgtaaaaaag gctgtgcgtt
    18601 ctcatcgctc ttaccgggga tcttcacaat atacggcttc ccggtaatcg atgacgacga
    18661 agcaacctta tcaataaact gctcggcagt gtcaatgcgg ttacgggtat tgccgagctt
    18721 cagacgcaga tgagaaaccg cttcatcgca ggtatgttca tcaccgttgc gcacaaatat
    18781 caaatccttt ttctgtgata atccctccag catggcgttg atgcgggctt cttcatgggc
    18841 agttaacttc gcgtaagcgg ggagtgtcat tagtagtgta atgaccagac aaatgatttt
    18901 cttcattgaa ttaccttatc cttgttttgt aatagccgat ttgactgcca gaatcaggta
    18961 aagtttcggt tggaatacga tgaggatcat cggcaaggag aaaaaattaa atgagtagtt
    19021 tgttgttgtt taacgataag agcagggcgc tgcaggcgga tatcgtcgcc gtgcagtcgc
    19081 aggtggttta cggcagcgtg ggcaacagca ttgccgtgcc tgctatcaaa cagaacggtc
    19141 tgaatgtttt tgccgtgccg acggtattgc tgagcaatac gccgcattat gacactttct
    19201 acggtggtgc gattccggat gaatggttta gcggttattt gcgtgcgctt caggagcgtg
    19261 atgcgctgcg ccagctgcgc gctgtaacca cgggctatat gggaacggca tcgcaaatca
    19321 aaatccttgc cgagtggctg actgcgctac gcaaagacca tcctgaccta ttgatcatgg
    19381 tcgatccggt gattggcgat attgatagcg gaatttatgt caaacctgac cttcccgagg
    19441 cgtatcgaca atatttactg ccgctggcgc agggaattac ccccaatatc tttgagctgg
    19501 aaatcctgac cggtaaaaat tgccgcgatc tcgacagtgc cattgctgcc gcaaaaagtc
    19561 tgctttcaga cacattaaaa tgggtggtga ttaccagcgc ctccggtaat gaagaaaatc
    19621 aggagatgca ggtggtggtg gtcagtgccg acagcgtgaa tgtcatttcc cattcacggg
    19681 taaaaaccga cctgaaaggg actggcgacc tgttttgtgc tcagcttatc agtggtttgc
    19741 tgaaagggaa ggcgttaaac gatgcggtgc accgtgcggg gttgcgcgta ctggaagtga
    19801 tgcgctacac ccagcagcat gagagcgatg aattgatttt gccgccgctg gcggaagcat
    19861 aaaaaatggc gccgatgg
//
LOCUS       DAJVUY010000073        19753 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.073, whole genome shotgun sequence.
ACCESSION   DAJVUY010000073 DAJVUY010000000
VERSION     DAJVUY010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19753
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.073"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            49..993
                     /gene="wecH"
                     /locus_tag="OQQ72_002289"
     CDS             49..993
                     /gene="wecH"
                     /locus_tag="OQQ72_002289"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000261200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyltransferase WecH"
                     /protein_id="HCS2011996.1"
                     /translation="MVVMIHTTTWYVTNAHSVSPVTWDIANVLNSASRVSVPLFFMIS
                     GYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINMELALKNLLQKPVFYHLW
                     FFFAIAVIYLVSPLIQVKNVGGKMLLVLMAVIGIIANPNTVPQKIDGFEWLPINLYIN
                     GDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFIISRGTLYELQWRGNFADT
                     WYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLGIYGFHALIIHALRTRGI
                     ELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS"
     gene            complement(1035..1472)
                     /locus_tag="OQQ72_002290"
     CDS             complement(1035..1472)
                     /locus_tag="OQQ72_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiaB family inner membrane protein"
                     /protein_id="HCS2011997.1"
                     /translation="MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYY
                     FAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLS
                     EKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE"
     gene            complement(1518..1859)
                     /locus_tag="OQQ72_002291"
     CDS             complement(1518..1859)
                     /locus_tag="OQQ72_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011998.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHICQLVALITIGLLFIGVLNAPINAYEMVIYPIAFFVC
                     LFGQMRLFRSV"
     gene            complement(2024..2215)
                     /locus_tag="OQQ72_002292"
     CDS             complement(2024..2215)
                     /locus_tag="OQQ72_002292"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2011999.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ72_002293"
     CDS             complement(2148..3467)
                     /gene="xylB"
                     /locus_tag="OQQ72_002293"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005077809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HCS2012000.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCH
                     ALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLSGER
                     TPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGG
                     GARSEYWRQMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH"
     gene            complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ72_002294"
     CDS             complement(3584..4861)
                     /gene="xylA"
                     /locus_tag="OQQ72_002294"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCS2012001.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVSFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGR"
     gene            5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ72_002295"
     CDS             5227..6198
                     /gene="xylF"
                     /locus_tag="OQQ72_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2012002.1"
                     /translation="MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDR
                     DIFVKKAESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA
                     KQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
                     AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGG
                     AIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGN
                     GQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ72_002296"
     CDS             6276..7805
                     /gene="xylG"
                     /locus_tag="OQQ72_002296"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HCS2012003.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLRILILDEPTRGIDIGAKYEIYKLINQLVQQ
                     GIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHVEKQS
                     V"
     gene            7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ72_002297"
     CDS             7783..8964
                     /gene="xylH"
                     /locus_tag="OQQ72_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HCS2012004.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ72_002298"
     CDS             9042..10220
                     /gene="xylR"
                     /locus_tag="OQQ72_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator XylR"
                     /protein_id="HCS2012005.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNREVML
                     "
     gene            complement(10328..11152)
                     /locus_tag="OQQ72_002299"
     CDS             complement(10328..11152)
                     /locus_tag="OQQ72_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HCS2012006.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            11472..13502
                     /gene="malS"
                     /locus_tag="OQQ72_002300"
     CDS             11472..13502
                     /gene="malS"
                     /locus_tag="OQQ72_002300"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS2012007.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEPVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRGLINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ72_002301"
     CDS             13680..14933
                     /gene="avtA"
                     /locus_tag="OQQ72_002301"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HCS2012008.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNVFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(15084..15557)
                     /locus_tag="OQQ72_002302"
     CDS             complement(15084..15557)
                     /locus_tag="OQQ72_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS2012009.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG
                     AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ72_002303"
     CDS             complement(15659..16507)
                     /gene="yiaJ"
                     /locus_tag="OQQ72_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HCS2012010.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ72_002304"
     CDS             16708..17706
                     /gene="yiaK"
                     /locus_tag="OQQ72_002304"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HCS2012011.1"
                     /translation="MKVTFEQLKAAFNRALISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL"
     gene            17718..18186
                     /locus_tag="OQQ72_002305"
                     /pseudo
     CDS             17718..18186
                     /locus_tag="OQQ72_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
     gene            18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ72_002306"
     CDS             18304..18777
                     /gene="yiaM"
                     /locus_tag="OQQ72_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HCS2012012.1"
                     /translation="MKKILEVILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            18780..>19753
                     /locus_tag="OQQ72_002307"
     CDS             18780..>19753
                     /locus_tag="OQQ72_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HCS2012013.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPDMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS
                     VVMFLVASAQVSTWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIL"
BASE COUNT         4985 a         4944 c         4800 g         5024 t
ORIGIN      
        1 cagcccaaaa tttactggat tgataacctg cgagggatag cgtgtttaat ggtggtgatg
       61 attcacacca ctacctggta tgtgaccaat gctcatagtg ttagccccgt cacatgggat
      121 atcgccaatg ttctgaattc tgcctctcgt gtcagcgtgc cgctattttt catgatttcc
      181 ggctatctct tttttggcga acgcagcgcc cagccgcgcc atttcttgcg tatcggctta
      241 tgtctgattt tttatagcgc aatcgcactg ctctacattg cgctgtttac ctccatcaat
      301 atggagttag cgctgaaaaa cctgctgcaa aagccagtgt tttaccactt gtggtttttc
      361 ttcgcgattg cggtgattta tctggtttca ccgctgattc aggtgaagaa cgtcggcgga
      421 aaaatgttgc tggtgctaat ggcggtgatt ggcattatcg ctaacccaaa cacagtgccg
      481 cagaaaattg acggttttga atggctgcca attaacttat atatcaatgg cgatactttt
      541 tactacattc tgtatggcat gttgggccgc gctataggga tgatggacac acagcataaa
      601 gcactgtcgt gggtgagcgc cgcgctgttt gcgacggggg tttttattat ctctcgcggg
      661 acattatatg aattgcagtg gcgcggaaat tttgccgata cctggtatct ttactgtggg
      721 ccgatggttt ttatctgcgc aatcgcgcta ttgactctgg ttaaaaacac gctggatacg
      781 cgtaccattc gcggacttgg cttaatctcc cgccattcat tgggtatata cggattccac
      841 gccttgatta tccatgcgct gcgcacccgg ggaattgagc ttaaaaattg gccaatactg
      901 gatattattt ggatcttttg cgcgacgttg gcagcgagtt tgttactttc tatgctggta
      961 caacgaatcg acagaaacag attagtgagt taagtaaaag cccgttcaca ttggactgac
     1021 cgggcttacg tgaattattc gctgtattct tcctgggtaa cctgtgtttc ttttggcggg
     1081 tttattccgg catcacgaat attcttctgc accgctactg caccaaacaa gcttaagaag
     1141 aaagccagtc cataaaaacc tttttcactg agtaataatg tcgcattcca cagacctacc
     1201 atcagtaatg caacagagat aataaagaca gtcaggcagg tcatataata aatggaagtg
     1261 gtcggtatgc cttcatactt gtcccgaacg gtcttttgat aagacgcagc agaaaacagt
     1321 cctaacacca gtacggcaaa ataataccct ttttcattta actgcatctc tgcattccat
     1381 agccctaaca gataggtaac gataccacca acgagagcta tccatgacac aatactaaag
     1441 gccggtgaat aggttgatat tttgttgtcc atcacagtat tcctttcatt cctgaatgtg
     1501 taagagcttt atgttgctca taccgagcga aacaaacgca tttgaccaaa caagcagaca
     1561 aaaaaggcga tggggtagat caccatttca taagcattga taggtgcatt taaaacaccg
     1621 ataaacaaga gaccgatagt gattaacgca actaactggc agatatgggt aaaaaaatta
     1681 tccagttgcc cgagtttttc tgcgcgaaga tatgcatagt taccaaaagt tgctgtcatt
     1741 aacacgccaa gaaaatagcc ttttccactt agcaatgggc atgagatcca tagcccaacc
     1801 agataaacca gcgccccgac aacaaataat agttttgcca cagtttttga ggttttcata
     1861 acgatctcca tatctaccag cgatacatta cgagtaacca acgaaagaca aaactgaaaa
     1921 atgccattaa caaatgattt tcagaataaa ttcatactaa atattaatta gtgagatata
     1981 tagatgtgaa ttatccccca cccggtcagg caggggataa cgtttacgcc attaatggca
     2041 gaagttgctg atagaggcga cggaacgttt cacgtcgtgg ctgataagcg gcataacgct
     2101 gcgcatctgg tagatgcgac tgttctaacg gtagctgcgg caacaactca atgagcgatt
     2161 tctctggatt cgccgcaatc tgcgccagcc ttgctgcgcc cagtgctggc cccacatccc
     2221 cccgtacggt aatcgagctg ctgaccgctg atatccgcca gcatctgacg ccagtactca
     2281 ctacgcgccc cgccaccaat caacgtaaca ctttgcggtt taatgccgca ggcatgcacg
     2341 acatccatgc catctgccag cgcataaccc acgccttcca gcactgctcg cgccagttca
     2401 ttggggccat gttgatgagt caaaccaaag aaaaccccct tcgcctgggg attattgtgt
     2461 ggtgtacgct cgccggaaag ataaggcaga aaccaaactg gctcggcact ttcatcagcc
     2521 tgttgagctg cagcgattaa agctgggaca ttgcacaggc cggttaattt cgcgacccaa
     2581 tccagacacg atgctgcact cagcattaca gacattaaat gccaacgctg cggtagcgca
     2641 tggcaaaagc tgtgtacagc gctttctggc ttgcttaaga acccttcgct gacagcaaaa
     2701 tagacccccg acgtccccag cgataacatt gcctgattag catcaaccat tcccacacca
     2761 actgcattgt cgccaccgcc tgcgacaact ggcaccgtcg ccatacccca cgctttcgca
     2821 acttcaggta acaaagcacc agtaatttcg ctgccttcgt ataatgcggg catctggtca
     2881 cgagataagt cgcaagcctg cagcatgacg tcactccagt cacgctttgc gacatccagc
     2941 cacatggtgc cagctgcgtc agacatatcg ctggcaaact cccccgtcat acgcagacgc
     3001 aagtaatctt tcggtaataa tactttgtcg atttgacgga atatctccgg ctcatgccgc
     3061 tgaacccata gcaatttagg cgcagtaaat ccgggcatca tcaggttgcc ggtaatcact
     3121 cgtgattgcg gaactctcgc ttccagcaaa gtgcactctt gcgcacagcg cccgtcgttc
     3181 cacaaaatgg cagggcgcaa tacccgttgt tgagcatcca gtaaggttgc tccatgcatc
     3241 tggccggcaa tacccaatgc tttaacgtcc tgcagagaat gctgatcgcc cagagctttc
     3301 attgcgcgat cagttgcctg ccaccactgt tccgggtctt gttccgacca gagtggatgc
     3361 gggcgcgaaa cggtcagctt ttccgtttgc gaagcaacca cctcaccctg ctcgttgagc
     3421 aaaataactt ttacgcccga ggtgccaaga tctatcccga tatacatatc gatcgttcct
     3481 taaaaaaatg cccggtatcg ctaccgataa ccgggccaac ggactgcaca gttagccgtt
     3541 atttgtcgaa cagataatga tttaccagat tttccagttg ctcctagcga ccactctgat
     3601 gcaccggaga caaattatgt tcctgagcat atttggctaa atctgccagt gacatttggc
     3661 ctttcaggat ttgctggccc aattcgctat tccagccgga ataacgctgc gcgatgcgtt
     3721 tatccagctc gccatcttca atcatgcgcg ctgcaatttt cagcgccagt gccatcgtat
     3781 ccatcgcgcc gatatgaccg taaaacagat catatttatc agtactttga cgacgtactt
     3841 tggcatcgaa gttcagacca ccggtggtga aaccgcctgc tttgagaatt tcatacatca
     3901 ccagcgcatt ctcttccaca ctgttcggga actggtcggt gtcccagccc agttgcgcat
     3961 cgccacggtt ggcgtcgaca gaaccgaaca ggccaagcgc aatggcggtg gctatttcat
     4021 gatggaaaga gtgacctgcc agcgtcgcgt ggttagcttc aatgttcagt ttaatctctt
     4081 tttccagacc aaactgtttc aggaagccat agaccgtcgc ggcatcgtaa tcatattgat
     4141 gtttagtcgg ttcttgcggt ttcggttcga taagcaacgt gccctggaag ccgattttat
     4201 gtttatgctc aaccaccatc tgcataaagc ggcccagttg ttcacgctcc tgacgcaagt
     4261 cggtatttaa cagcgtttcg taaccttcac gaccacccca caggacatag ttttcaccgc
     4321 ccaatttatg ggttgcttcc atcgctgtaa caacttgcgt tgccgcccag ctgaagactt
     4381 caggatctgg gttcgtcgcc gcacccgcgc catagcgagg gtttgtaaag cagttagcgg
     4441 ttccccacag cagcttcacg ccgctctctt cttgcttggc tgccaggaca tcaaccattt
     4501 gcgcaaaatt attgatgtac tcttttaacg acgcgccctc aggggaaaca tccacatcgt
     4561 ggaagcaata aaatgacaca tgtaacttgt ggaaaaactc aaatgcgaca tctgctttac
     4621 gcttcgccaa cgccagtgcc tcaccaggct gctgccacgg acgattaaac gcccccacac
     4681 caaacatgtc cgccccgttc cagcagaagg tgtgccagta acaggcggca aaacgcaagt
     4741 gctcttccat acgcttaccc aacaccagtt cgtcgggatt gtagtgacgg aatgctaacg
     4801 ggtttgagga ttttgagcct tcataacgaa cgcgatcgag ctggtcaaaa taggcttgca
     4861 tattgaactc cataatcagg taatgccgcg ggtgatggat gatgtcgtaa tattgggcac
     4921 tccctttcag ttgctcaatt atgttatttc acactgctat tgagataatt cacaagtgtg
     4981 cgctcgctcg caaaataaaa tgggatgatg aaactgggta attcctcgaa gataaaaatg
     5041 caataagtac aattgcgcaa caaaagtaag atctcggtca taaatcaaga aataaaccaa
     5101 aaatcgtaat cgaaagataa aaatctgtaa ttgttttccc ctgtttagtt gctaaaaatt
     5161 ggttacgttt atcgcggtga ttgttactta ttaaagctgt cctctaacta cagaaggccc
     5221 tacaccatga aaataaagaa cattctactc accctttgca cctcacttct gcttaccaac
     5281 gttgcggcac acgccaaaga agtcaaaata ggtatggcga ttgatgatct acgtcttgaa
     5341 cgctggcaaa aagatcgaga tatttttgtg aaaaaggctg aatctctcgg tgcgaaagta
     5401 tttgtacagt ctgcaaatgg caatggagaa acacaaatgt cgcagattga aaacatgatt
     5461 aaccggggtg tcgatgttct tgtcattatt ccgtataacg gccaggtatt aagtaacgtt
     5521 gtaaaagaag ccaaacaaga aggtattaaa gtattagctt acgaccgtat gattaacgat
     5581 gcggatatcg atttttatat ttctttcgat aacgaaaaag tcggtgaact gcaggcaaaa
     5641 gccctggtcg atattgttcc gcaaggtaat tacttcctga tgggcggctc gccggtagat
     5701 aacaacgcca agctgttccg cgccggacaa atgaaagtgt taaaacctta cgttgattcc
     5761 ggaaaaatta aagtcgttgg tgaccaatgg gttgatggct ggttaccgga aaacgcgcta
     5821 accgccaata ataacaaaat tgatgctgta gttgcctcaa acgatgccac cgcaggtggg
     5881 gcaattcagg cattaagcgc gcaaggttta tcagggaaag tagcaatttc cggccaggat
     5941 gcggatctcg caggtattaa acgtattgct gccggtacgc aaactatgac ggtgtataaa
     6001 cctattacat tgctggcaaa tactgccgca gaaattgccg ttgaattggg caatggtcag
     6061 gagccaaaag cagatacctc actgaataat ggcctgaaag atgtcccctc ccgcctcctg
     6121 acaccgatcg atgtgaataa aaacaacatc aaagatacgg taattaaaga cggattccac
     6181 aaagagagcg agctgtaagc gttacgcccc ggcgcggagc gggggcgtga tttctctcca
     6241 tgccgcgtga atgaattggc ttaggtggag tcgttatgcc ttatctactt gaaatgaaga
     6301 acattaccaa aaccttcggc agtgtgaagg cgattgataa cgtcagcttg cggttgaatg
     6361 ctggcgaaat cgtctcactc tgtggggaaa atgggtctgg taaatcaacg ctgatgaaag
     6421 tgctgtgtgg tatttatccc catggctcct acgaaggcga aattattttt gcgggagaag
     6481 agattcaggc gagtcacatc cgcgataccg aacgcaaagg tatcgccatc attcaccagg
     6541 aattggccct ggtgaaagaa ttgaccgtgc tggaaaatat cttcctgggt aacgaaataa
     6601 cccacaatgg cattatggat tatgacctga tgacgctacg ctgtcagaag ctgctcgcac
     6661 aggtcagttt atccatttca cctgataccc gcgttggcga tttagggctt gggcaacaac
     6721 aactggttga aattgccaag gcacttaata aacaggtgcg cttgttaatt ctcgatgaac
     6781 cgacagcctc attaactgag caggaaacgt cggttttact ggatattatt cgcgatctac
     6841 aacagcacgg tatcgcctgt atttatattt cgcacaaact caacgaagtc aaagcgattt
     6901 ccgatacgat ttgcgttatt cgcgacggtc agcacattgg tacgcgtgat gctgccggaa
     6961 tgagtgaaga cgatattatc accatgatgg tcgggcgaga gttaaccgcg ctttacccta
     7021 atgaaccaca taccaccgga gatgaaatat tacgtattga acatctgacg gcatggcatc
     7081 cggttaatcg tcatattaaa cgagttaatg atgtctcgtt ttccctgaaa cgtggcgaaa
     7141 tactgggtat tgccggactc gttggtgccg gacgtaccga gaccattcag tgcctgtttg
     7201 gcgtgtggcc cggacaatgg gaaggaaaaa tttatattga tggcaaacag gtagatattc
     7261 gtaactgtca gcaagccatc gcccagggga ttgcgatggt acccgaagac agaaagcgcg
     7321 acggcatcgt tccggtaatg gcggttggta aaaatattac cctcgccgca ctcaataaat
     7381 ttaccggtgg cattagccag cttgatgacg cggcagagca aaaatgtatt ctggaatcaa
     7441 tccagcaact caaagttaaa acgtcgtccc ccgatcttgc tattggacgt ttgagcggcg
     7501 gcaatcagca aaaagcgatc ctcgcccgct gtctgcgcat tctcattctt gatgaaccta
     7561 ccaggggtat tgatattggc gcgaaatatg agatctacaa attaattaac caactcgtcc
     7621 agcagggtat tgccgttatt gtcatctctt ccgaattacc tgaagtgctc ggccttagcg
     7681 atcgtgtact ggtgatgcat gaagggaaac taaaagccaa cctgataaat cataacctga
     7741 ctcaggagca ggtgatggaa gccgcattga ggagcgaaca tcatgtcgaa aagcaatccg
     7801 tctgaagtga aattggccgt accgacatcc ggtggctttt ccgggctgaa atcactgaat
     7861 ttgcaggtct tcgtgatgat tgcagctatc atcgcaatca tgctgttctt tacctggacc
     7921 accgatggtg cctacttaag cgcccgtaac gtctccaacc tgttacgcca gaccgcgatt
     7981 accggcatcc tcgcggtagg aatggtgttc gtcataattt ctgctgaaat cgacctttcc
     8041 gtcggctcaa tgatggggct attaggtggc gtcgcggcga tttgtgacgt ctggttaggc
     8101 tggcctttgc cacttaccat cattgtgacg ttggttctgg gactgcttct cggtgcgtgg
     8161 aacggatggt gggtcgcgta ccgtaaagtc ccttcattta ttgtcaccct cgcgggcatg
     8221 ttggcatttc gcggcatact cattggcatc accaacggca cgactgtatc ccccaccagc
     8281 gccgcgatgt cacaaattgg gcaaagctat ctccccgcca gtaccggctt catcattggc
     8341 gcgcttggct taatggcttt tgttggttgg caatggcgcg gaagaatgcg ccgtcaggct
     8401 ttgggtttac agtctccggc ctctaccgca gtagtcggtc gccaggcttt aaccgctatc
     8461 atcgtattag gcgcaatctg gctgttgaat gattaccgtg gcgttcccac tcctgttctg
     8521 ctgctgacgt tgctgttact cggcggaatg tttatggcaa cgcggacggc atttggacga
     8581 cgcatttatg ccatcggcgg caatctggaa gcagcacgtc tctccgggat taacgttgaa
     8641 cgcaccaaac ttgccgtgtt cgcgattaac ggattaatgg tagccatcgc cggattaatc
     8701 cttagttctc gacttggcgc tggttcacct tctgcgggaa atatcgccga actggacgct
     8761 attgcagcat gcgtgattgg cggcaccagc ctggctggcg gtgtgggaag cgttgccgga
     8821 gcagtaatgg gggcatttat catggcttca ctggataacg gcatgagtat gatggatgta
     8881 ccgaccttct ggcagtatat cgttaaaggt gcgattctgt tgctggcagt atggatggac
     8941 tccgcaacca aacgccgttc ttgattttga taaaaatttt ctcaaagccg gttacgtatt
     9001 accggttttg agtttttgca tgattcagca ggaaaagaac catgtttact aaacgtcacc
     9061 gcatcacatt actgttcaat gccaataaag cctatgaccg gcaggtagta gaaggcgtag
     9121 gggaatattt acaggcgtca caatcagaat gggatatttt cattgaagaa gatttccgcg
     9181 cccgcattga taaaatcaag gactggttag gagatggcgt cattgccgac ttcgacgaca
     9241 aacaaatcga gcaagcgctg gctgatgtcg acgtccccat tgttggggtt ggcggctcgt
     9301 atcaccttgc agaaagttac ccacccgttc attacattgc caccgataac tatgcgctgg
     9361 ttgaaagcgc atttttgcat ttaaaagaga aaggcgttaa ccgctttgct ttttatggtc
     9421 ttccggaatc aagcggcaaa cgttgggcca ctgaacgcga atatgcattt cgtcagcttg
     9481 tcgccgaaga aaagtatcgc ggagtggttt atcaggggtt agaaaccgcg ccagagaact
     9541 ggcaacacgc gcaaaatcgg ctggcagact ggctacaaac gctgccaccg caaaccggga
     9601 ttattgccgt tactgacgcc cgggcgcggc atattctgca agtatgtgaa catctacaca
     9661 ttcccgtacc ggaaaaatta tgcgtgattg gcatcgacaa cgaagaactg acccgctatc
     9721 tgtcgcgtgt cgccctttct tcggtcgctc agggcgcgcg gcaaatgggc tatcaggcgg
     9781 caaaactgtt gcatcgatta ttagataaag aagaaatgcc gctacagcga attttggtcc
     9841 caccagttcg cgtcattgaa cggcgctcaa cagattatcg ctcgctgacc gatcccgccg
     9901 ttattcaggc catgcattac attcgtaatc acgcctgtaa agggattaaa gtggatcagg
     9961 tactggatgc ggtcgggatc tcgcgctcca atcttgagaa gcgttttaaa gaagaggtgg
    10021 gtgaaaccat ccatgccatg attcatgccg agaagctgga gaaagcgcgc agtctgctga
    10081 tttcaaccac cttgtcgatc aatgagatat cgcaaatgtg cggttatcca tcgctgcaat
    10141 atttctactc tgtttttaaa aaagcatatg acacaacgcc aaaagagtat cgcgatgtaa
    10201 atcgcgaggt catgttgtag cgatgatgag aattgtcggc gtcacatcag ggaactcagc
    10261 acagccacct gatgcgagca aaagccttat ccgaccgaca aatcagataa ggctcaagga
    10321 aatgcaatta catatgcgcc gcgattaacc gttggttatc ctggtacatt gcgaacaggt
    10381 agttattata actcttccct ttggtcgagt agcccttcag cttgtgaatc atcgctgtgg
    10441 cagtcacttc ctgatccgct ttacgcagct gcgcacgcga tttacggaac gaagagtaag
    10501 ccgggtgcgt attcaggtta gtgacatagg cgctcaccga ttctttgaca gaactaaact
    10561 gtgagtaccc tttcacttta cccggcgcat tggtacaacg tcctttcatg catttcatgc
    10621 cgaacagatt gttattgttg cgcgccagct tcgacgttcc ccaaccgctt tctgctgcag
    10681 ccatcgtcgc caccatactg gtagggataa tgtctacgcg ttcaagcaag gtattccacg
    10741 ggatttttcg cgtattacca gaccacttca ccttgtagcg tttggcgatg tctttcagac
    10801 gcgcacgctc agcaggtgac cattggccct gatactgttt tgaaatcagc cagttacgtt
    10861 ctgcagtaat ggctgcattt tggctggtaa tgtaaggcat tacggtccgg agaaacgcct
    10921 ttttccttgg tgttccggaa gggtattttc gcaaatcagg aagtgaacta ctctttgcac
    10981 tattgcgaga atactcttgt ttactgctta cctgtttatt actagcttta gttaagtggg
    11041 acttttgact cgctgttgtt gtgtgcgtct tcgctaacac ctcactcgaa aacaccagag
    11101 tgagtaacat aagaatcatc gccccatatc gtcgtatggg agtcaaaatc atcaggtctc
    11161 ctggtcggat ttaatcattc caacacctta tatttttcac aaatttgaga gttgaatctc
    11221 aaatcatatc aaaaatagct gtcaagagca ccccaaggaa tagtccaaat ctgaaactat
    11281 gtcacgagtt aacgattcag attggcgcta aatcgcagaa aatgtggggt ttatcgcaaa
    11341 attcagccgt tttttgcgcg cgatcgctca cccttgcttc tcatcctgtg gacttaccgc
    11401 tcagggatga gttttgtctg gcttatcgct ggcaaactgt ctgaaatcgc agcaataagg
    11461 actcatccac catgaaactc gcctcctgtt ttctgacact ccttcctggc ttcgccgttg
    11521 ccgccagctg gacttctccg gggttccctg cctttagcga acagggaacg ggaacatttg
    11581 tcagccacgc gcagttgccc aaaggtacgc gtccactcac gctaaatttt gaccaacagt
    11641 gctggcagcc tgcagatgcg ataaaactca atcagatgct ttccctgcaa ccttgtagca
    11701 acacgccgcc tcaatggcga ttgttcaggg acggcaaata tacgctgcaa atagacaccc
    11761 gctccggtac gccaacattg atgatttcca tccagaacgc cgccgaaccg gtagcaaacc
    11821 tggtccgtga atgcccgaaa tgggatggat taccgctcac gctggatgtc agcgccactt
    11881 tcccggaagg agccgccgta cgggattatt acagccagca aattgcgata gtgaagaacg
    11941 gtcaaataac gttacaaccc gctgctacca gcaacggttt actcctgctg gaacgggcag
    12001 aaactgacac atccgcccct ttcgactggc ataacgccac ggtttacttt gtgctgacag
    12061 atcgtttcga aaacggcgat cccagtaatg accagagtta cggacgtcat aaagacggta
    12121 tggcggaaat tggcactttt cacggcggcg atttacgcgg cctgatcaac aaactggatt
    12181 acctccagca gttgggcgtt aatgctttat ggataagcgc cccatttgag caaattcacg
    12241 gctgggtcgg cggcggtaca aaaggcgatt tcccgcatta tgcctaccac ggttattaca
    12301 cacaggactg gacgaatctt gatgccaata tgggcaacga agccgatcta cggacgctgg
    12361 ttgatagcgc acatcagcgc ggtattcgta ttctctttga tgtcgtgatg aaccacaccg
    12421 gctatgccac gctggcggat atgcaggagt atcagtttgg cgcgttatat ctttctggtg
    12481 acgaagtgaa aaaaacgctg ggtgaacgct ggagcgactg gaaacctgcc gccgggcaaa
    12541 cctggcatag ctttaacgat tacattaatt tcagcgacaa aacaggctgg gataaatggt
    12601 ggggaaaaaa ctggattaga acggatatcg gcgattacga caatcctgga ttcgacgatc
    12661 tcactatgtc gctggccttt ttgccggata tcaaaaccga atcaactacc gcttctggtc
    12721 tgccggtgtt ctataaaaac aaaacggata ctcacgctaa agtcatcgaa ggctttacac
    12781 ctcgcgatta cttaacccac tggttaagtc agtgggtccg cgactatggg attgatggtt
    12841 ttcgggtcga taccgccaaa catgttgagt tgcccgcctg gcagcaactg aaaaccgaag
    12901 ccagctccgc gcttcgcgaa tggaaaaaaa ctaaccccga caaagcatta gatgacaaac
    12961 ctttctggat gaccggtgaa gcctggggcc acggcgtgat gcaaagtgac tactatcgcc
    13021 acggcttcga tgcgatgatc aatttcgatt atcaggagca ggcggcgaaa gcagtcgatt
    13081 gtctggcgca gatggatacg acctggcagc aaatggcgga gaaattgcag ggtttcaacg
    13141 tgttgagcta cctctcgtcg catgataccc gtctgttccg tgaagggggc gacaaagcag
    13201 cagagttatt actattagcg ccaggcgcgg tacaaatctt ttatggcgat gaatcctcgc
    13261 gtccgttcgg tcctacaggt tctgatccgc tgcaaggtac acgttcggat atgaactggc
    13321 aggatgttag cggtaaatct gccgccaacg tcgcgcactg gcagaaaatc agccagttcc
    13381 gcgcccgcca tcccgcaatt ggcgcgggca aacaaacgac actttcgctg aagcagggct
    13441 acggctttgt tcgtgagcat ggcgacgata aagtgctggt catctgggct gggcaacagt
    13501 gacttttccg gcttcccgtt catcagtacc tcgggaagcc gccaaccagg ataaaatgtc
    13561 agccctaatc agcgttgcag gataaagcac cgctcactct tcaacagacc gatttgcacc
    13621 ccagcaaatg tagcgttatt gttaccttcc ttgctacaga gttcgacaga tatcccgcta
    13681 tgacattctc cctttttggt gacaaattta cccgccactc cggcattacg ctgctgatgg
    13741 aagatctgaa cgacggttta cgcacgcctg gcgcgattat gctcggcggc ggtaatccgg
    13801 cgcagatccc ggaaatgcag gactacttcc agacgctact gaccgacatg ctggaaagtg
    13861 gcaaagcgac tgatgcactg tgtaactacg acggtccaca ggggaaaacg gagctactca
    13921 cactgcttgc cggaatgctg cgcgagaagt tgggttggga tatcgaacca cagaatattg
    13981 cactaacaaa cggcagccag agcgcgtttt tctacttatt taacctgttt gccggacgcc
    14041 gtgccgatgg tcgggtcaaa aaagtgctgt tcccgctggc accggaatac attggctacg
    14101 ctgacgccgg actggaagaa gatctgtttg tctctgcgcg tccgaatatt gaactgctgc
    14161 cggaaggcca gtttaaatac cacgtcgatt ttgagcatct gcatattggc gaagaaaccg
    14221 ggatgatttg cgtctcccgg ccgacgaatc caacaggcaa tgtgattact gacgaagagt
    14281 tgctgaagct tgacgcgctg gcgaatcaac acggcattcc gctggtgatt gataacgctt
    14341 atggcgtccc gttcccgggt atcatcttca gtgaagcgcg cccgctatgg aatccgaata
    14401 tcgtgctgtg catgagtctt tccaagctgg ggctgcctgg ctcccgctgc ggcattatca
    14461 tcgccaatga aaaaatcatc actgccatca ccaatatgaa cggcattatc agcctggcac
    14521 ctggcggtat tggtccggcg atgatgtgtg aaatgattaa gcgtaacgat ctgctgcgcc
    14581 tgtctgaaac agtcatcaaa ccgttttact accagcgtgt tcaggaaact atcgccatca
    14641 ttcgccgcta tttaccggaa aatcgctgcc tgattcataa accggaagga gccattttcc
    14701 tctggctatg gtttaaggat ttgcccatta cgaccgagca gctctatcag cgcctgaaag
    14761 cacgcggcgt gctgatggtg ccggggcaca acgtcttccc gggactggat aaaccgtggc
    14821 cgcatacgca tcaatgtatg cgcatgaact acgtaccaga gccggagaaa attgaggcgg
    14881 gggtgaagat tctggcggaa gagatagaaa gagcctgggc tgaaagtcac taaaaattgc
    14941 ctgatgcgct acgcttatca ggcctacatg atttctgcaa tatattgaat ttggaagaat
    15001 ttgtaggccg gataaggcgt ttacgccgca tctggcataa acaaagcgca ctattccggc
    15061 gttgagaaac gccggaaaac gtttcaaaca ggctgctgcc gtagccgatg ccgctgcact
    15121 ttctcgacat ccatgcactg caacgccttt gtcgggcagg cttcaacaca ggccggcccc
    15181 gtctcccgat gccagcacag atcgcactta atcgccctcg cctttttgcg cgaagaaacg
    15241 acctccatcg caccaaacgg gcaagccagc atacagcttt tacagccaat gcaacgtgtt
    15301 tgttcaacga aaatatgccc atgttcgcgg cttatcgcgt caacagggca gacattcgcg
    15361 cacggtgcat cttcacactg atgacaggct actgccgtgg tccagctgtg gtctttaatg
    15421 acacgaatac gggaaataaa ctcgtctggt gacaacgcag cgcaatcctg attctcctga
    15481 tgcgacactg cgcaagccac ttcacaggta cggcaaccga tacatttcgt cgcatccgca
    15541 ataataaacc ggttcatgat cactcctttg cactaaaaca gcagagtgcc agagagcgcg
    15601 tccctactgc tttgatccaa cgaaggaaat gttaaagttt tggcacttgt ccaaagcgtt
    15661 atgtgatcgc gcccaggtca tccctgacag taaatcccag ttcattagaa atagcctgcg
    15721 cggtttcacg cagtggtttc aggagatttt tctctcccac ctgtttcaga cgtgatgtcg
    15781 aaagcgaaat cgacacggcg tacggcaccc gcccatgaat atcaaacacc ggaacagcaa
    15841 tacaggagac gccgagttcg ttttcttctc tgtccatcgc cgctccgctt tcacgaatgt
    15901 gcgccagttc gtcgaacatc gcgggcagct cggtaatggt attgcgggtt aacggctgga
    15961 tctcatgctg atggttttcc cagtatgact tcacgtagtc cgggtgacca aacgccatgt
    16021 agatcttgcc cattgcggaa cagtagagcg gcatatgctg gccaatatag gcacgggttc
    16081 gcagcatccc ggttgtgggt tccagcttat aaatcaaaat agcgtgatcg tcttcgcggc
    16141 tggagaagtt aatggtttca ccagtggcga tgttcagtgc ctcaagatgc ggagcggcga
    16201 tatgaatgat attcagcgaa gacagcgcct tctgcccgac ggcaataaat ttggtagtca
    16261 ggcggtaact ccctgcggcg ggcgcggtgg tcacatagcc gcaggactgt aatccctgca
    16321 ataagcgatg gacggtactc ttatttaaac cagccagctc cgaaagatgc gccaacggac
    16381 aaccgtttgg atagttgctc aaaatctcaa tcagcatcaa cccgcgaaac agactctggc
    16441 ttccggctgg acgctctttt tcctgcgcca tctcgttctc tttttttccc atcacttctt
    16501 tccccatttt gtcgcgtcct gatggtagcg caaagtgtgc cgtagttcac gatctcgaca
    16561 gataatttat aaccacttga tttttatgtc ttttgaaatt catcaatcag attgctttgt
    16621 taaaaagtga tcgatatatt tgaaatcaag tttcgcatat tgaaatttta agccaaaaaa
    16681 gcgatcaaaa aaacaaggaa gcctgggatg aaagtgacat ttgagcagtt aaaagcagcc
    16741 tttaatcggg ccttaatttc acgcggcgtt gacagcgaaa cggctgacgc ctgtgcagag
    16801 atgttcgccc gcaccaccga atccggcgtt tattctcacg gcgttaatcg tttccctcgt
    16861 ttcattcaac aactggaaaa cggcgatatc attcctgatg cccaacccaa acgtataacc
    16921 agcctcggcg caattgaaca gtgggatgcc cagcgttcga tcggcaacct gacggcgaaa
    16981 aagatgatgg atcgcgccat tgaactggct gccgatcacg gtattggtct ggtggcactt
    17041 cgtaatgcca accactggat gcgcggcggc agctacggct ggcaggcggc ggaaaaaggc
    17101 tatattggca tttgctggac caactccatc gccgtaatgc cgccgtgggg cgcaaaagag
    17161 tgtcgcattg gcactaaccc gctgatcgtc gccattcctt ccacgccgat caccatggtc
    17221 gatatgtcga tgtcgatgtt ctcttacggc atgttagaag ttaaccgcct ggcgggccgt
    17281 cagctcccgg tcgatggtgg ctttgatgat gagggcaatt tgaccaaaga acctggcgtt
    17341 atcgagaaga atcgccgcat tttgccgatg ggctactgga aaggttctgg catgtcgatt
    17401 gtgctggata tgatcgctac tctcctttcc gacggcgcat cggttgccga agtcacccag
    17461 gacaacagcg acgaatacgg catttcacaa atttttattg ccattgaagt ggacaagctt
    17521 atcgacggtc ccacccgcga tgccaagctg caacgcatca tggattacgt tactaccgct
    17581 gaacgcgctg acgaaaacca ggccatccgc ttacccggcc acgaatttac taccctgctg
    17641 gccgaaaacc gccgtaacgg catcactgtt gatgacagcg tgtgggccaa aatccaggcg
    17701 ttatgaggag ataagtcatg atttttggac atatcgcgca gcccaatccg tgccgtttgc
    17761 ccgccgccat tgaaaaggcg ctcgattttc tgcgcgctac caacttcaac gtcctggagc
    17821 cgggcgttgt cgaaatcgac ggcaagaata tttatgcgca aattatcgat ttaaccacac
    17881 gcgaagcggt ggaaaaccgt ccggaagtgc atcgtcggta tatcgatatt cagtttctgg
    17941 cgtggggtca agagaaaatc ggcattgcta ttgatacagg aaataataaa gtcagcgaat
    18001 cactattaga gcagcgcgat attatttttt atcatgtcag tgaacatgaa tcatttatag
    18061 aaatgatacc gggcagctac gctattttct tcccgcagga tgttcaccga ccaggttgta
    18121 ttctgcaaac aggcctctga gatacgaaaa attgtggtta aagtcgcatt aacagcgctg
    18181 aattaatcaa ataatcgtct acgccagaac gactgggtaa tgttattgct ctaactatat
    18241 taataattta ggttgctgca catgcaactt gaattatgac agacatagcc tcaaggaata
    18301 gctatgaaaa aaatacttga agtaatactg gcgattaatc tcgccgtact ttcctgtatt
    18361 gtgtttataa acattatttt aagatatggt tttcagacaa gcattttatc tgtagatgaa
    18421 ttgtcacgtt atttatttgt ctggttaaca tttattggcg cgattgtggc ttttatggat
    18481 aacgcccacg ttcaggtcac ctttctggtg gagaaactct cccccgcatg gcaacgacga
    18541 gtcgctctgg ttacccattc cttaatctta tttatttgtg gcgcactggc ctggggcgca
    18601 acactaaaaa caattcagga ctggagcgat tattcaccga tcctcggttt gcccatcggc
    18661 ctgatgtatg ccgcttgtct gcccaccagc ctcgttatcg cattctttga actgcgtcat
    18721 ttatatcaac tcatcacgcg tagcaattct ctaacgtcgc caccgcaagg agcttaatca
    18781 tggctgtgct gatttttctg ggctgtctgt tgggtggtat tgctatcggt ttgcctattg
    18841 cctgggcact gttgttgtgc ggggcggcgt taatgttctg gctggacatg tttgatgtcc
    18901 agatcatggc acaaacgctg gtgaacggag ccgatagctt ctccctgctg gcgattccgt
    18961 tctttgtgct ggcgggtgaa atcatgaatg cgggcggctt gtcaaaacgc attgttgacc
    19021 tgccgatgaa actggtgggg cataaaccag gcgggctggg ctacgtcggc gtgctggcag
    19081 ctatgattat ggcgagcctt tctggttctg ccgttgcgga taccgccgcc gttgccgctc
    19141 tactggtgcc gatgatgcgc agcgccaact acccggtcaa ccgggcggcg gggctgattg
    19201 cctctggcgg cattatcgcg ccaattattc ccccttccat tccgtttatt atcttcggcg
    19261 tttccagcgg attatccatc agtaagctgt ttatggcggg cattgcccct gacatgatga
    19321 tgggcgcaac gctgatgctt acctggtggt ggcaggccag tcgccttaat ttaccccgcc
    19381 agcaaaaagc aacgatgcag gaaatctggc actcttttgt ctccggtatc tgggctctgt
    19441 ttcttccagt catcattatt ggcgggtttc gctccggtct gtttacccct accgaagccg
    19501 gggccgttgc tgctttctat gcgctgtttg tcgccacagt tatttaccgt gaaatgacct
    19561 tcgccacact ttggcatgta ctcattggcg cggcgaaaac cacctcagtg gttatgtttc
    19621 tggtggcctc ggcacaagtt tccacctggc tgattaccat tgctgaactg ccgatgatgg
    19681 tttctgattt actgcaaccg ttggtcgatt caccgcgtct gctgtttatc gtcattatgg
    19741 tggctatcct gat
//
LOCUS       DAJVUY010000074        19637 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.074, whole genome shotgun sequence.
ACCESSION   DAJVUY010000074 DAJVUY010000000
VERSION     DAJVUY010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19637
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.074"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            6..81
                     /locus_tag="OQQ72_002308"
     tRNA            6..81
                     /locus_tag="OQQ72_002308"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Thr,seq:ggt)
     gene            121..236
                     /gene="rrf"
                     /locus_tag="OQQ72_002309"
     rRNA            121..236
                     /gene="rrf"
                     /locus_tag="OQQ72_002309"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(468..1226)
                     /locus_tag="OQQ72_002310"
     CDS             complement(468..1226)
                     /locus_tag="OQQ72_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HCS2012014.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(1234..2337)
                     /locus_tag="OQQ72_002311"
     CDS             complement(1234..2337)
                     /locus_tag="OQQ72_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS2012015.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     VLLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLKKRFNTGRTPH"
     gene            complement(2347..3517)
                     /locus_tag="OQQ72_002312"
                     /pseudo
     CDS             complement(2347..3517)
                     /locus_tag="OQQ72_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026209.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
     gene            complement(3585..4664)
                     /locus_tag="OQQ72_002313"
     CDS             complement(3585..4664)
                     /locus_tag="OQQ72_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2012016.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LLGFSYADADGKFSGIDVDVDVDVDVDVDVDVDVDVDVCRSVAAAVFGDDTKVKYTPL
                     TAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAK
                     ELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQS
                     QLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGIN
                     SQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSE
                     SPLKIKRGQNNLWNNGGIQYAPPVR"
     gene            complement(5095..5316)
                     /locus_tag="OQQ72_002314"
     CDS             complement(5095..5316)
                     /locus_tag="OQQ72_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012017.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGCLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            complement(5569..8673)
                     /gene="acrF"
                     /locus_tag="OQQ72_002315"
     CDS             complement(5569..8673)
                     /gene="acrF"
                     /locus_tag="OQQ72_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit AcrF"
                     /protein_id="HCS2012018.1"
                     /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS
                     VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDI
                     AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
                     NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ
                     LGGTPALPGQQLNASIIAQTRLKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN
                     VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ
                     LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK
                     GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE
                     DQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAG
                     MAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFE
                     LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALSV
                     SLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRMLPEDVDKLYVRSANGEMV
                     PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGY
                     DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA
                     ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR
                     PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR
                     CFKG"
     gene            complement(8685..9842)
                     /gene="acrE"
                     /locus_tag="OQQ72_002316"
     CDS             complement(8685..9842)
                     /gene="acrE"
                     /locus_tag="OQQ72_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HCS2012019.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYNSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     GTVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10241..10903
                     /gene="acrS"
                     /locus_tag="OQQ72_002317"
     CDS             10241..10903
                     /gene="acrS"
                     /locus_tag="OQQ72_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HCS2012020.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            complement(10906..11085)
                     /locus_tag="OQQ72_002318"
     CDS             complement(10906..11085)
                     /locus_tag="OQQ72_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 family protein"
                     /protein_id="HCS2012021.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(11169..12053)
                     /gene="yhdJ"
                     /locus_tag="OQQ72_002319"
     CDS             complement(11169..12053)
                     /gene="yhdJ"
                     /locus_tag="OQQ72_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS2012022.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDII
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            complement(12139..12435)
                     /gene="fis"
                     /locus_tag="OQQ72_002320"
     CDS             complement(12139..12435)
                     /gene="fis"
                     /locus_tag="OQQ72_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HCS2012023.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            complement(12461..13426)
                     /gene="dusB"
                     /locus_tag="OQQ72_002321"
     CDS             complement(12461..13426)
                     /gene="dusB"
                     /locus_tag="OQQ72_002321"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HCS2012024.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            complement(13755..14636)
                     /gene="prmA"
                     /locus_tag="OQQ72_002322"
     CDS             complement(13755..14636)
                     /gene="prmA"
                     /locus_tag="OQQ72_002322"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HCS2012025.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            complement(14648..16099)
                     /gene="panF"
                     /locus_tag="OQQ72_002323"
     CDS             complement(14648..16099)
                     /gene="panF"
                     /locus_tag="OQQ72_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HCS2012026.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            complement(16089..16331)
                     /locus_tag="OQQ72_002324"
     CDS             complement(16089..16331)
                     /locus_tag="OQQ72_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HCS2012027.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            complement(16424..17359)
                     /locus_tag="OQQ72_002325"
     CDS             complement(16424..17359)
                     /locus_tag="OQQ72_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS2012028.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTGAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            complement(17391..18221)
                     /locus_tag="OQQ72_002326"
     CDS             complement(17391..18221)
                     /locus_tag="OQQ72_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS2012029.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVAAQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            18564..19418
                     /locus_tag="OQQ72_002327"
     CDS             18564..19418
                     /locus_tag="OQQ72_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HCS2012030.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEAELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            19454..>19637
                     /locus_tag="OQQ72_002328"
     CDS             19454..>19637
                     /locus_tag="OQQ72_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012031.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
BASE COUNT         5222 a         4916 c         4684 g         4815 t
ORIGIN      
        1 agcgtgctga tatggctcag ttggtagagc gcacccttgg taagggtgag gtccccagtt
       61 cgactctggg tatcagcacc actttttagg ttaaagttcg gcaaattaga aaagaatttg
      121 tctggcggca gtagcgcggt ggtcccacct gaccccatgc cgaactcaga agtgaaacgc
      181 cgtagcgccg atggtagtgt ggggtcttcc catgcgagag tagggaactg ccagacatca
      241 aataaaacaa aaggcccagt cttccgactg agccttttgt tttatctgtt gtttgtcggt
      301 gaacactctc tcgagtagga caaatccgcc gggagcggat ttgaacgttg cgaagcaacg
      361 gcccggaggg tggcgggcag gacgcccgcc ataaactgcc agacatcaaa tcaagcaaaa
      421 aggccatccg aaaggatggc ctttttgctt ttcgaactaa cattcaatta atggattacc
      481 tgcgataaaa atgccctcgt acgctctgat ttaggatgcg taaaaaattc atcaggtgca
      541 gcttgttcca ctatctcccc acgatccata aaaattaccc ggtcagcgac ggtacgtgca
      601 aaccccatct catgtgttac acacaacatt gtcatacccg actgcgccag cccaatcatc
      661 gtatccagca cctctttcac catctccgga tcgagcgccg acgttggttc atcaaacaac
      721 ataattttcg gcttcataca cagcgaacgc gcaatggcaa cgcgttgctg ctgaccacct
      781 gaaatctgtc cgggaaactt atgcgcatgt tcggcaattc tcacccgctc aaggtaatgc
      841 atcgccagag cttcagcctc tttcttaggc atcttgcgta cccaaatcgg tgccagggta
      901 cagttctgta aaacggtcag atgagggaag agattgaaat gctgaaatac cattcccact
      961 tcttgcctga cgcgctcaat attgcggata tcttcattaa gttcgatgcc atctacgaca
     1021 atccgtccct gttgatgttc ttccagatga ttaatacaac gaatggttgt cgatttaccg
     1081 gaaccagaag ggccacacag aacgatccgt tctcccggtt gcacggttaa atttatattt
     1141 ttcaaaacat ggaattgtcc ataccattta tggacgtttt ccagcgtaat catcgcgtta
     1201 gcaggttgca gtaaaatttg gctcatagtg tcctcaatgc ggtgtacgcc cggtgttaaa
     1261 acgttttttc agatgttggc tataacgtga catgctgaaa caaaagatcc agtagatcag
     1321 cgcggcgaaa acataccctt ccgtcgacat acccaaccag gcgggatcaa cggttgcctg
     1381 ctgaacgcta ctgaaaagat cgaacaagcc gatgatgatc accaggctgg tatctttgaa
     1441 gagtgcgatg atggtattta ccagcccagg aattaccagc ttcaacgcct gtggcagaat
     1501 aaccagcccc tgagttttcc agtaccccaa cgccagcgac tctgccgctt catattgccc
     1561 tttaggtagg gcctgtaatc cgcctcgcac gacttccgca acatatgctg actgaaacag
     1621 gatcacgcca accagcgcgc ggatcagttt gtcgatactg gtgccttctg ccataaacaa
     1681 cggcagcatg accgaagaca taaacaatac ggtaatcagc ggtacgccgc gccagaactc
     1741 gataaaaatg accgataaga tacgcacaat cggcatatgg gagcggcgac ctaacgccag
     1801 taagatcccc cacggtagcg cccccgcaat cccaacggat gcaataatta aagttagcgt
     1861 cagcccgccc cattgccggg tttcaacccg ctcaagacca aaaaaaccgc catacatcag
     1921 ccaccagaca atcagtgggt aaatcaccgc ccagaccgca atatagcgac cgcgatgcgg
     1981 gagtattttc cagaacattg gtgcgattga cacaaggcca atcagtaata ccaggttaat
     2041 tcgccagcgt tggtcgtgtg ggtaaagtcc atacataaac tgaccaaatc gttcgtggat
     2101 gaagacccaa caggcaccgg cttttgtgca gtcggcacgc gttgagccaa cccagttagc
     2161 ctgcaaaaat gcccagttca gcaacggtgg gatcagttcc cacatcaacc atatgcagcc
     2221 aatagtcagc aggctattgc tccagctgga gaacagattt tttcgcaccc acaccatcgc
     2281 gcggcttgag ttatggctcg ctgggcgcga gggctgagac agcaatactt ttgtcatcat
     2341 gactccttag cgttcaacga tcgcgatgcg gcggttatag atattcatca gcagcgagat
     2401 agtcaggctg ataatcagat agaccgacat ggtcatggct atcgtctcga tggcttgccc
     2461 cgtctggttc agcacggtgc cagcaaacag cgaaaccata tcgggatagc caatagcggc
     2521 ggcaagagag gagtttttga cgatgttgag atactggctg gttaacggcg gaataatcac
     2581 tcgcagtgcc tggggaataa tgacctggcg tagcgtaacc ccagtgaccg agccgcttca
     2641 tgttgaccat aaggcactgc ctggatccca gcgcggataa tctcggcgat aaatgcagag
     2701 gtataaaccg aaagtgccag cgttaaggct gccagttcag gaattaaaac cattccgccg
     2761 cggaagttaa agcctcgtag ggctgggaca tcccagtgta gtgctgcgcc aaaaagccat
     2821 tgcgccagta aaggcaaacc gatgatcaac actgcggcga acggccaggt gcggcgcagt
     2881 tgtccggtct ttatctggta tgttttatta aagcggaata gcccaacaga aaggactata
     2941 gccataacaa cagccaggat aaacgcaata aatccgtctc ccagctgcgg tgacggaata
     3001 taaagcccac gattgctcaa aaaggccaga tcaaacgcgc tcacagcctg gcgcgtggtc
     3061 cgggcaaatt gcgcaacacg gcaaagtacc agaagaagat ttgcagcagc gggggaatat
     3121 tacggaagat ctcaatataa attgtggata gctttcgtag cagtcagtta tccgaaagtc
     3181 tcgtcagacc gataaagaag cctaaaacag aagcgaacac aatacacaat gcagaaacca
     3241 gtagcgtatt gagtaagccg acaataaaaa cgcgtccgta ggtgtcgccc tgctggtaat
     3301 cgatcaaatg ctggacaata ccgaagccag cgccgcgatc cagaaaggca aaacctgaag
     3361 taatgccacg attactgaga ttcgttacag tgttgtgaaa taaccaacca acaattccga
     3421 caacagcaac aacggcaagg atctggaata accaggcacg aaccgtaggg ttggcaaagg
     3481 agagtgagcc tttaacggtt gagcggcgat gagacataga aacctcggaa agcataacgc
     3541 tgaagagagc gccgccgtag cgacgctcgt tacctcacac cgacttaacg cacgggcggc
     3601 gcgtactgaa taccgccgtt attccagaga ttattttgcc cacgtttaat tttcagcggg
     3661 ctttctgaac ctacgttacg ctcgaaaatt tccgagtagt tacccacctg tttgatgatg
     3721 ttataggccc atttattatc caacttcaga tccttgccgt aatcgccttc tttacccagc
     3781 agatgtgcca tatcaggcgt tgctggatta gccgcttttt catcgacgtt ctgggaattg
     3841 atgcccatct cttcagcatt cagcatggcg aaaagcgtcc agcgtacaat cgagaaccat
     3901 tcatcatcgc cacgacgaac taccggccca agcggttctt tagagataac ctccggtaag
     3961 acaatccatt cagctgggtt gcttaatttg atgcgcaggg catacagttg cgactgatcc
     4021 gaggccagcg tatcgcagcg accagattcc agtgccttcg ctgattcgtc agagcgatcg
     4081 aaagtcaccg gtgtgtactt catattgttt gccttgaaat agtcggcaac gttgagttcg
     4141 gtatcagtac ccgcctgaat acagacggta gcgccatcca gttctttcgc gctttttagc
     4201 cccgctttat cgtgcgtcag gaagccaatg ccgtcgtaat aagtgacgcc agtaaatgcc
     4261 attcccatcc cggcgtcgcg agatgaagtc caggtcgtat tacgggagag caaatccact
     4321 tcccctgact gtaaagccgt gaagcgttct tttgctgtga gtggggtata tttcactttc
     4381 gtgtcgtcac caaatacagc agcggcaaca ctacgacaaa catcaacatc aacatcaaca
     4441 tcaacatcaa catcaacatc aacatcaaca tcaacatcaa catcaatacc tgaaaactta
     4501 ccgtctgcat cggcataaga gaacccaagt aatccatcac tgatcccgca ttgcacaaaa
     4561 ccttttttct gaacggcatc aagcgtcgcg ccagcatgcg cctgatttgc aacggcaagc
     4621 agcacgctgg cggcagccag tgtggctatc atcatctttt tcataatgct tcctgtgagg
     4681 cgaaaattat cgttatagga cgtttgggaa acgtctttta cctgtctgtg gccatcctct
     4741 tataagcaaa agtagtgcca gcttttgcgc acgatttcgc gtcgcaataa gctgagtgta
     4801 gacaggaaat aataaaaaca gcgccccgca atggtgcgaa aatgaaacat gcgccacatt
     4861 ttggcgcaaa atatttacgc gtgttttact aagcagaata atgattgtta gcgtgagtat
     4921 atttctggtg ggaagtgtga aagttaaatt gatgcgttat ttcgaaagca gcgaaataac
     4981 gcgatataac atgctaaatc agcagagaat tagccagcag aatatagcaa tattttatct
     5041 tatgtaaaga tactgtatcg ttaaacagag cgcgaaactc cgcgccctgt tcagttattt
     5101 cgacagagcg atgatcccca tcgtcaggcc agcaacagcc gctgccccgc cggcaatagc
     5161 cccagccgtt tcccagttat cctgagtcgt gcctttcata caggtattgg tgtgaaccag
     5221 acaaccctga tcgtcataaa ccggaacgca gggcgaatcg tgagcacagc ccgccagcaa
     5281 tgcggtgagc aatgccacag gaattaatct tttcatggtg ttacctcagt aataaacgct
     5341 aacgcttaat aagttaactc tcttattaac gagctgaatg ccattttatc accggaggtt
     5401 ataaatattg cggaatgaat aatgacaaat tatgtgaatt gtaaaaatag tgaagggagc
     5461 gggaactata gaaagttttt aaagagtgag tggaagaata tcttattaat ttttatgggt
     5521 ttcactgaaa ataataaagg cacccgaaag tgcctttatg tttctgattt atcctttaaa
     5581 gcaacggcgg atcaccacaa agaacaccgg taggaagaag attgccagca acgttgcaga
     5641 gaccattccg cccattaccc cgatacccac tgcgttctgc gcgccactgc ctgcaccgtt
     5701 actgatagct agcggtaata cgccgagaat aaaggcgaga gaggtcatca ggataggacg
     5761 cagacgcata cgtactgcca ttagtgtcgc ttcaacaaca cctttaccct ctttctccat
     5821 gagatcttta gcgaactcaa caatcaaaat agcgtttttg gccgacaagc caattgtcgt
     5881 tagcaagccc accataaagt agacgtcatt tttttgatta aagagtgtcg ccgccagcag
     5941 cacgccgaca atccctaacg gcacgaccaa cataaccgag acaggaattg accagctttc
     6001 atagagtgca gcaaggcaca ggaaaacaac cacaaaggaa attgctacta gagcgggagc
     6061 ctggtttccc gataagcgtt cctgatacga catacccgtc cagtcataac caatgcccgc
     6121 aggtaatttt gacgcaaggt tttccatcaa cgccatggca tcgccggaac tggttcctgg
     6181 cgcggcttcc ccctgaatct ccattgacgg cagaccgttg tagcgttcca gtcgcggaga
     6241 gccatacacc caatgtgaag tggtaaaggc cgagaatggc accatttcgc cgttggcgct
     6301 gcggacataa agtttatcga catcttctgg cagcatacgg aatttggcat ccgcctgaac
     6361 atacaccttt ttcacgcgac cacggtcgat gaagtcgtta acgtaagtcc cacccaacgc
     6421 cgttgaaatg gtctgattga tgtcagaaag tgaaacactt aatgcctgcg ccttttcctg
     6481 gtcaacttcc agtttaaact gcgcggtgtc ttccaggcca ttaggacgca cgctgactaa
     6541 gctggcagga tgttgcgccg ccataccaag caactggtta cgggcctggg ttagggcatc
     6601 gtgacccagc ccagcctgat caattaactc aaagtcgaaa cccgttgccg tgcccagttc
     6661 aacaatggct ggcatattga atggaatgac aaaaccgtcg cggatcttgc ccaattccat
     6721 tttggcacga tggattaccg cttccgcact gttttcatca ccattacgct cttcccacgg
     6781 tttcagactg acgaaggcca taccggcgtt ttgtgcctgg ccgctgaagc taaagccgtt
     6841 aaccgtaaag acactttcaa cgttcgcttt ctcgttcttc agatagtaat ccgtcacttg
     6901 atccaacact ttttgcgtcc gctcttgcgt cgcgccagcg ggcaactgaa tcatggtcag
     6961 aaagacaccc tgatcctctt caggtaagaa ggaagacgga agacgtaaaa acaacaccac
     7021 cattcctgca acaatcagcg catagatcag taaatatcgt cctgtggaac cgaggatttt
     7081 gccgacgctg ttggtgtagt ggttaacgct atgatcgaag gtggtattaa accagccgaa
     7141 gaaaccgccc ttattttcgt gatgctcagc agagacgggt ttaagcagcg ttgcacataa
     7201 cgcaggggta agaatcaatg ccaccagaac agaaagtgcc attgccgaaa cgatggtgat
     7261 agagaactgg cgataaattg ccccagtaga accgccgaag aatgccatcg gaataaatac
     7321 cgctgacagc accatcgcga tacccaccag tgcgccctga atttgcgaca tcgatttttc
     7381 cgtcgcttct tttggcggga gcttatcctc catcatcacg cgctcgacgt tctccaccac
     7441 cactatcgca tcatcgacga gcagcccgat ggcaagcacc atcccgaaca tcgttagtgt
     7501 gttgatggag taaccaaaag cggcgaggat ggcaaacgtc cctaacaaca ccacgggtac
     7561 cgcaatggtg gggatcagcg ttgctcgcat attctgcaag aacagataca tcaccaggaa
     7621 caccagcata atggcttcga acagcgtttt taccacttcg tgaatagaaa gctggacgaa
     7681 tggcgtggtg tcataagggt agagaacctt cattccctgc gggaagaatg gctgtaattc
     7741 cgccagtttt gccttaatgg ctttcgcggt atcgagagca ttcgcgccgg ttgccagctt
     7801 aatccccagg cccgccgccg gttttccgtt gatacgagcg ataacgttat agttttcacc
     7861 gccaagttca acccgtgcga catctttcag gcgtaccacc gagccgtcac tgtttacgcg
     7921 cagggtcact ttgccgaatt cttccggatt ttttaaccgc gtttgagcaa taatcgaggc
     7981 attcaactgt tgccctggta acgctggcgt tccgcccaac tgtccggcag cgatctgatc
     8041 gttctgtacc ttcaactggt taatcacatc aaccggtgtc agtttatatt tgtttagcag
     8101 atcggcgtcc agccagatac gcatcgcata ctgtgcgccg aaaagctgta cgtcaccgac
     8161 gccattcaga cggctaagcg tatctttaac gttagaggcc acatagtccg agatatcgtc
     8221 ctgtgtggtg cctgggttat cagagacaaa acccgccacc atcaaatagc tgctactgga
     8281 cttttcaaca ctgatcccct gctgctgaac ctcctgcggc agcaacggcg tggcgagctg
     8341 gagtttgttc tgcacctgca cttgcgcgat atcaggatcg gtcccggact ggaaggtaag
     8401 ggtaattgtc acgctaccgg cggaatcgtt ggtggaggac atatacatca ggttatcgat
     8461 accattcata ttctgttcga taacctgcgt caccgtatcc tgcacggtct gcgcatcagc
     8521 acctggatag tttgccgaaa cagaaaccgc aggcggtgca atggttggat actgagcgac
     8581 gggcaattgt aggatcgcca gtgcgcccgc catcatcaga ataatggcca gcacccatgc
     8641 aaatatcggt cgtcgaataa aaaagtttgc catgtcagat taccttactt cgatgcagta
     8701 tctgcggggg tatcggtagt ggctttaacc tgctctcccg gacgcgcttt ttgcaggccg
     8761 ctgacaatga cttgatcgcc agatttcaga ccttcgctaa tcaaccattt atcgccaatc
     8821 gcctgactgg caacgacagg gcgcgcttcc acctgacttt tatcgttaac aatcagcacg
     8881 gttgcatcac cacgcggtgt gcggctaacg ccttgttgcg ggataagaat ggcgtcaggt
     8941 tggacgcctt catcaatccg tgcacgcaca tacatacccg gcaaaagcgt atgttgcggg
     9001 ttagggaaga cagcacgtag ggttatggag ccggtgcttt catcaacggt cacatcagag
     9061 aattgcagcg tacctttcag gggataggtt tgaccgtttt ccatgaccaa ctctacgttg
     9121 ctggtggcgt tttccttatg caaatttcct tgctctacgg attgcttcag cctcataaaa
     9181 tcgttgctgg attgggtcac atcaacgtag ataggatcga gctgctggac agtcgccagt
     9241 tcagtcgttt gcccattagt gacaagagcg ccttcggtca cggtcgattt gccgatacgt
     9301 ccgctaattg gcgcagtcac tttggtataa gcgagattga tgcgagcgct ttcgactgtg
     9361 ccttttgcgg caatcacggc ggcatcggcc tggcgagcat cagcaatggc ctggtcgtac
     9421 tcctgctggc tgatgtattt cgtacccacg agcggaacgt aacgttttac cgtcaaatgc
     9481 gcgatggcgg cggcggcttc acttttcgcc agttcgcctt tcgcgctgtt ataatttgcc
     9541 tgataggtcg cgggatcgat ctggtacagg gactggcctg cttgtacatc gctgccttca
     9601 gtgaaattac gattcagtac gatcccgcta acctgtgggc gaacttcggc tatacggtaa
     9661 gcattggtgc ggcctggtaa ttcagtctta acttctaacg gggccgtttt cacaatatga
     9721 acggtaacct gcggttcacc gacgtgagct ttctcttctc ccttatcgtt acaaccggcg
     9781 attaaagccg cggagatcag aataaaggag ggcaggagga aaaacctggc atgtttcgtc
     9841 attactattc ctcaaaaaac caaaagcgcg ttatttaccc agaaaggcaa cgcgttaact
     9901 cgcagaaaga aaaatacagt ttgctatcct acaaattatc attcgtcgat gtaaggaata
     9961 gttatgaata ctggcgtctc aaggcacata aacacaaaaa aagattaata ttctactgtt
    10021 ttattttgac gcgggttgaa agaggcagaa ttaaaacctc gtaaattgaa atatatattc
    10081 atgtggcgaa tgtattttag gtaaataata tacattgttt atttgacgat ttatagcaac
    10141 tcaatgttac cctctcgtat aaatacacat tagatgatag attaaccttc gctattttct
    10201 caccctgtgt cgaatatatt tatttcctga ataattaatc atggcaaaaa gaaccaaagc
    10261 cgaagctctg aagacccggc aagaactgat tgaaactgcc atcgcccagt ttgcgcagca
    10321 tggcgtaagc aagacgacgc tcaacgacat tgccgacgcc gctaacgtta cgcgtggcgc
    10381 tatctactgg cacttcgaaa acaagactca actgtttaat gagatgtggt tgcaacagcc
    10441 ttcattgcgg gagttaatcc aggaacactt gacggctgga ttagagcatg acccgtttca
    10501 acaattgcgt gaaaaattga ttgtcggctt gcaatatatt gccaaaattc cccgccagca
    10561 ggcgttgctg aaaatcttat atcacaaatg tgaatttaat gatgagatgc tggccgaggg
    10621 agtgatacgc gaaaagatgg gctttaatcc gcagactctc cgcgaagtat tgcaggcgtg
    10681 tcagcaacaa ggttgtgtag caaataacct cgatttagat gttgtgatga ttattattaa
    10741 tggtgccttc agcggaattg ttcaaaactg gttaatgaat atggcgggtt atgatcttta
    10801 taaacaagca cccgcgctgg tcgataacgt attaagaatg ttcatgccag atgaaaacat
    10861 aacgaaatta attcatcaaa cgaatgaatt aagtgtcatg taaattcaca ttctgtcctg
    10921 aaaattcagt tcgtcacagt taaccagttt tagtggatta actgagttca tattacggca
    10981 tttgtctgtt tctgttgtca gcagttcaat ccactgcatc agtaaagtat caaacagaaa
    11041 aacgaagaca gcgaaaacga cgagccacca atacttgcga atcattacct gagcctgtgc
    11101 atgtttaacc aagtctggca ggaaatatac acgaaatgaa taatctgaaa accaggctta
    11161 cacttccttt actttgcaat gagatcgggg tcaacttcgc ttaaccggct tcgttttgac
    11221 aggttgccgg tctttctttt tttcactttc gccagttctt ccgcagagta atgcgacgcg
    11281 acatccagcc gtcgaagccc cattttgatg tactcgctgt tgatctcaat accaatgaat
    11341 tttcgcccgc tggagacggc tacggcaccg gtagtaaagc taccggcaaa cgggtcgaga
    11401 atgatatcgc ctgggttgga agaggcgaga ataatgcgtt tcagtaaggc ttccggtttt
    11461 tgcgtcgggt ggttctcata ttcatccatc aaataacgca cgcgcggaaa atcccagacg
    11521 ttacccggta ctttttgatg attgtatggc tgtggaggat ttttgcgata atcgatcaac
    11581 gcgcgctgcg atccggtttt ggcttctacc agaatagcat caccgttgaa tgtgtagttc
    11641 tttgcgtctt tcaccatcat caggatgggg tcgtacatgg agccgtagtg ttttttcgcc
    11701 tgtactccag aactgtcata tgaccagacg atgcgacttt tgatggtaaa aagcttgcgg
    11761 cactggagat cgataaaggg catgttttcc gtgctgttca tgatgtacat gctgccctgc
    11821 tttttcagaa cgcggtggca ctctgcaatc acttcaaaca gccagtcgat aaacagatct
    11881 tctttccagg cttcgatcag accatcaaaa tttttaccga tgttatatgg tgggtcggca
    11941 aagatcagat cgacactttc ggcggggatc tttttaagtt cggcaagcgc atcaccgtga
    12001 ataatggtct tagcttcatt accaaaccgg gtcggttcac atcctgttct catggtcact
    12061 ccctttgtga cacctataaa aaaggcgctt ccccatgccg agtagcgcct ttttaatcaa
    12121 gcatttagct aacctgaatt agttcatgcc gtattttttc aattttttac gcagcgtacc
    12181 acggttgatg cccatcatca gcgcagcacg ggtctggtta ccacgggtgt attgcatcac
    12241 catgtccaac aggggctgtt ctacttcagc cagtaccagc tcatagaggt cattcacatc
    12301 ctgaccattc agttgagcaa aatagttctt cagtgcctgt ttaaccgagt cacgcagggg
    12361 tttttgggtt acctgatcct gagagttaac ggtagaaacg gtcagtacgt cagaatttac
    12421 gcgttgttcg aacatagttc tgtcagctct ttatttctgt ttacgcaaaa ttttcgaagt
    12481 atgcctccaa cgcctccagc tgttcgctgg catcctcaat ggcgttgaat gtgcgccgaa
    12541 actggtcatt tggagcgtgt tcctggagat accaggaaac gtgtttacgt gcaattcggt
    12601 acccttttgc cggaccataa aagtcatgca gttcccgaac gtgcgcgcaa agcaagcgct
    12661 taacctctgc caaaggcagt gggggcagca actccccagt gtccagataa tgctggattt
    12721 cccgaaagat ccagggtctt ccctgagctg cgcggcctat catcagggca tccgcccctg
    12781 tatagtcgag cacagctctg gctttaagcg ggtcagtaat gtcgccattc gcgataaccg
    12841 gaatggaaac tttctgctta actgcccgaa tactgtcgta ctcagcttct ccattgaaca
    12901 aacaggcgcg tgtacggcca tgaatggtca gagcctgaat gccacagtct tcagccagtt
    12961 gggcaatctc ttcgcagtta cggtgttccg gtgcccagcc agtgcgaatc ttcagggtaa
    13021 caggaacgtc cactgcattg acgacctcgg taaggatcga tttaacgaca tccgggtact
    13081 gcaagagggc tgaacctgcg agcttgcgat tcactttttt agccgggcaa cccatattga
    13141 tatcaataat ctgggcaccg ctttccacgt taatacgtgc tgcatctgcc atttctttcg
    13201 gatcgctacc agcaatttgc acggtgcgaa taccgggttc atcaatgtgc accatccgta
    13261 aacgagattt gtcgctttcc caaacctgtg ggttagaaga catcatctcg gatactgtca
    13321 atccggctcc catctcgtag cacaacgtcc gaaaaggtct gtctgtaatg ccagccatgg
    13381 gcgctgcgat caggcgattt ctgagctgat attgtccgat gcgcatgagt taagaaatga
    13441 ccatactgtg actgcaaggc ggcgtatatt acgcattttt tgcacgagat gaaaggccaa
    13501 actttgacca atcctctgag atggatcaaa gaattgcatt taaaatgagc gtggtgcgat
    13561 aattactcat aaaaatcatc atattagaaa atagtgacta aaatttacat tcaaagaaat
    13621 ttgagtaagt tctcaatttt tctttatgaa tgaaaatttt ggcacgcaaa tttgcgtaaa
    13681 taaccggcaa atttacgtgc cttttgtgag cttgctcgca cttcgccccg cgtcacccta
    13741 cggcgatgcg aaggttaatt cttacgaccg gtaatacggc accactcttc tttttccacg
    13801 accgggtcca gtgcgaagct atcggcataa gcttcacaaa cgctctctgc ctggcttgcc
    13861 agaataccgg aaaggcccag caaaccgcct gaaaccggca ggacgctgat taacggtgcc
    13921 agttcacgta atgggcctgc aaggatgttc gcgaccacca cgtcggcttt catttcttct
    13981 ggctgatctt tcggtaagta gagttccaga cggtcagaaa cgccattacg ttcggcgttg
    14041 tcgcggctag cctgaatcgc ctgcggatcg atatcaatac caatggcttt tgctgcaccc
    14101 agtttcagcg ccgcgatagc cagaatgccg gaaccgcagc caaagtcgat gactgtttta
    14161 ccagttaaat cgaggctgtc gagccattgt aggcacagag aggtagttgg atgggtaccc
    14221 gtaccaaacg ccagccctgg gtctaacatc acgttgacgg cgttttcgtc cggcacatca
    14281 cgccagcttg ggcagatcca cagtcgttca ccaaagcgca tcgggtggaa attatccatc
    14341 cattcgcgct cccagtcttt atcttccagt tgttcgattt tatgcgcgaa gcctgcgccg
    14401 agcagcggat ggttttccag aatcgccacc acgtcgttca tatcggtttc agcgtcgaac
    14461 agaccaatca catcggtgtc gccccacagg cgcgtttcgc ccggcagcgg ctcaaatact
    14521 ggcgtatcgt gggtatcctg aaaagtgata gaaacggcac ccgcttccat cagcgcatcg
    14581 ctaagatctt cagcgttcgc gccggtggtg ttcagtttca gttggatcca aggcatggca
    14641 aaactcttta tttatcagta gtcaaaacgg tagcttgcgg gacggatgta ccgaaacggt
    14701 ttccgaccag gaaagccagc aaacttagta gtaacgaggg cacgataggg tggaagccca
    14761 ggtactgaat attcagcgtc gcgagtacgg catacagcac gccgccaacg atcatcgcac
    14821 ttagcgcgcc tttggcgttg gcgcgttccc agtaaagacc cagcaccagc ggccacagga
    14881 aaacggcttc caacccaccg aaggccagca aattcagcca gatgatcatt tctggcggct
    14941 tccaggcggc aagcagcagc aacgcgccga gaactaacgt aattaccgcc gacatccgct
    15001 tcagacgcgt ctcgttttgc atttgatccg gacggatatt cagatagaga tctttaatga
    15061 tcgtagcgga actttgtagc aattgggcgt taattgtcga catgatcgca gccataggtg
    15121 cagccagaaa gatcccggca gcaaacggtg gcagcacttt taccattaac gtcgggatca
    15181 ccagatccgg tacggtgaga tcggggatca ctgcacgacc taacgctccg gccaggtgca
    15241 taccgaacat caggattgcg actacaatcg taccgatgat gatcccccgg tgtaccgctt
    15301 tgctgtcttt ataagagata cagcgcaccg cagtatgcgg caggccaatc acgccaaagc
    15361 acaccagtac ccagaacgac gtcataaagg caggcgacag aatatcgtca gcgccttgtg
    15421 gcgtaaccag ttgcggatcg atggtttgca gcgtctctac cgcattactt aaaccacctg
    15481 cggcatgtac cacgccaata agcagcacaa cggtgccaat cagcatcaca agcccttgca
    15541 tggtgtcgtt cagcacgctg gcgcgaaagc cgccaaaggc ggtatacaac gcaatgctga
    15601 taccgaaaat cagcagcccg gtttcataag gaatacccgc cgcggtttcc agcaggcgcg
    15661 caccgccgat aaactgcacg gtcattgccc caacgaacgc aaccagcaaa ctcaaactcg
    15721 ccagccacac cagaagacga ctctggtagc gggcaaacag catgtcgttc agcgtcactg
    15781 cattgtagcg gcgcgcaaga atcgcgaact tcttgccgag aataccgagc gaaagccaga
    15841 ctgcaggaag ctgaatcatc gccagcaata cccaacccag gccgtattta taagcagctc
    15901 caggcccgcc gataaacgaa cttgcactga tataggtcgc ggtgagcgtc atcgccagca
    15961 caataccgcc catagagcgg ctgccgagga aatactcatt aaggaaggta ccggtgctcc
    16021 gtttacgcat cgcataaaca gagataccga acaccaccac cagataggcg accagcggta
    16081 gaatcacttc aagctgcatc gtcatcctcc agtgggatat cgcgatagat aaatttcacc
    16141 atcgcccagc acagtccaat aaacagcagc ggcgtcagga tgcaggccat ctcaaaccag
    16201 cgcggaaagc cggtaaaacc gggggcaacg tcaggtaagt aagcggctgc taaccaaact
    16261 gccagataca aaagggtcag ccccagcgcc cagcgcgcct ctttatgggc ctgaacaaaa
    16321 cgagtgtcca cggaagggtt cctcctcatg gggggatacg agaaacgggc aattctacgg
    16381 caactcttca ggcagggaaa ataatctgac agaaaattgc cgttcagtgc tgctgcaaaa
    16441 agtcttcaat gtcagccagt gaggatatcc cttccatcgg accttgccgc attacggcga
    16501 gcgcgccgct ggcatttgca tattgcagtg ccttatgtgc cgggaaaccg gataagaaaa
    16561 gagtgataaa cgttgcgcca aagcagtcgc ctgcacccgt tggatcgata atttcgatat
    16621 cgtggcctgt aacatgctgg gcgtgtaatg taccgttttt aagcttgtaa tagctggccc
    16681 cacgctgggc gcgttttatc gccacatgtt ttacgccgcc gtggagaaga tcgctaacaa
    16741 tctgttcttc tgacagattt ttgtgacgcg cgaagaaagg gagttcgctt tcgctgggga
    16801 tgaaaatatc cgtatattca atcaaataat cgagagcctg cgccatttca ggaatgctca
    16861 gcatctcttt gcgaatattg ggatcgaaag aaacggtgcc gccagccgat ttgatcgtcg
    16921 ttattgcttt acgcatgaca tcgatcatgc gaaatgagaa caatgatgag cccacaatat
    16981 ggagatggtt acactgtttt agcagatcct tatcaatgtg ctcagcagta aacaagccgc
    17041 aggcgctgtt agggatatta aagacgaaat cgcgctgctg gggattttga taactcacga
    17101 acgccgtacc tgtgacggca ttgttcataa catggatccc atcggtaatg acaccttcat
    17161 gacggaggcg ctctataatg agtcggccaa aatcatcatt accaacacat ccgaagaaga
    17221 tggcccgatg ggacagtttt gccacctgag cagcaaaaat tgctggcgca ccgctgggaa
    17281 atggcccgat aaactcccca ggctgagtga atttttgatg tgggttgcgg gacaaaaact
    17341 cggccagcaa ttcgcccata gcgcagatag ttattgtcac aaaacccctc tcattcctga
    17401 agcctttcgc gattggacca ggtaaagcac tcattactgg tataaaggat aacgaaatca
    17461 gccgactgca attgttgctg atattgttcg ttaatgctgc ggctgacgat cacattttct
    17521 gcctgatgca aatgcccgat agcagccgtt gatggcgcag gatcggcggc aacgataacc
    17581 gtcttattct gggcatgatc gaaacagagc tgccaggcag cggccagtct gggaacgttg
    17641 atatttaaag taccatcagc atccagatgg ttgatttcca gaatgctatg tgtaatggtg
    17701 aaatgctgaa gtgcctgttc aagcggtttt ccggccagtg cggtgtcggg gcgcagcatt
    17761 tcactgccag ccagtattat ttcgccatca ataaactgat ttgccagcag cgcatgttcg
    17821 ggatcgttgg tgatcagacg cagttttttc acttcgctga gcaatggaat gatcttacgg
    17881 cagattgtcc catgtccaag aaatagcgtg tcacgatcgc gaattaaccg tgcgcaatgt
    17941 cgtgctattt ccatttgttg tgccagagac aatggcgcga tcggttgtat cgcttctggt
    18001 tcagaggaga gtggtgtcgc aatagcaccg ccaaatgatc gctttaaata tccctgttgc
    18061 tccagataac tgagatcgcc gcggatcgtc acgccagaga caccaagttg cgcagataag
    18121 tcatcaactt tgatttcacc ttgggcggca acaatttctg caatttttaa tctgcgtttc
    18181 agtaggttag acgattttct cggcacgtta acactcttca ttggccttta atgcgtaaca
    18241 ctatagcccc ttgtattttt ctttgaaagt tatccttcaa taatatcgac aattcgaaaa
    18301 gaaaatcatg ggtcaaaaat cgcaacaaaa atagattaat tcattgaaaa ataaatgaat
    18361 ttattcatat ttatgcagag atgttattgg tttcacttgt aaagtgaaaa acaaattaag
    18421 ttattttttt gtaagttatt ttgatgatat tcgacatgta tcacgctttt tgccgctttt
    18481 gctgtgctag tttgctttca aaatgaaagt gaatattctc tttcttcatt ttgtaaggcg
    18541 aacgacaaat aacaggagct gcgatgtaca tcatttcaag caaaaacatg ctgaaaaaag
    18601 cccagtcaga gggatatgcc gtccccgctt tcaacattca taaccttgaa actttacagg
    18661 tagttgttga gagcgctgca caacttcgct ctcccgttat gctggcggga acacccggta
    18721 cttatcgtta tggtggcgtg ggaagtttaa tttcgttagt acaatcgctg gctcgcgagt
    18781 acaacctgcc gttagtcctg catctcgacc atcatgaaga gagtgatgac atttttaaca
    18841 aggttcgcgc agggatccgt tctgtcatga ttgatggctc ccatttgcca tttgaagaca
    18901 acattgcgcg agtgcaagaa gttaccacct tttgccatcg ctttgatgtt agcgttgagg
    18961 ccgagctagg gcgtcttggc ggccaggagg acgatctgct ggtggatgaa aaagattccg
    19021 cttatacctc accagccgca gctgcagagt ttgttcaacg tacccaaatt gactccctgg
    19081 ccgtagcaat cggcacagca catggtttat atgcgcatga accacgactg gattttgtgc
    19141 ggctggaaca gattcgtcag cgagtggaga ttccactggt gttgcatggt gcttcgggct
    19201 tatcagaaca ggacgttcag cactgtattc gccgcggtat ttgtaaagtg aatgtcgcga
    19261 cagaattgaa aattgcgttt gccgatgcgt taaaaggata tttctacaac aatcctgcgg
    19321 caaatgatcc acgccactat atgcagcccg caaaggccgc catgaaagaa gtcgtaactc
    19381 gtattattgg tgtctgtggt agtgaaggaa aaatttaaga cgttgtaccc tacaaaaaca
    19441 atgaggattg tttatgaaaa atattaaatt acttggttca gctatgttgg tgagcctggc
    19501 attgttctcg caaaattcgt tggcaaaaga gtataaaatt ggtgcgtcat tattaacaca
    19561 gcaacatcct ttctatattg atcttgcgaa tgccatgaaa gaagaggcaa aaaaagacaa
    19621 tgtcaattta agtgtct
//
LOCUS       DAJVUY010000075        19369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.075, whole genome shotgun sequence.
ACCESSION   DAJVUY010000075 DAJVUY010000000
VERSION     DAJVUY010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.075"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(33..1862)
                     /gene="glmS"
                     /locus_tag="OQQ72_002329"
     CDS             complement(33..1862)
                     /gene="glmS"
                     /locus_tag="OQQ72_002329"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HCS2012032.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(2024..3394)
                     /gene="glmU"
                     /locus_tag="OQQ72_002330"
     CDS             complement(2024..3394)
                     /gene="glmU"
                     /locus_tag="OQQ72_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HCS2012033.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILISNGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(3745..4164)
                     /gene="atpC"
                     /locus_tag="OQQ72_002331"
     CDS             complement(3745..4164)
                     /gene="atpC"
                     /locus_tag="OQQ72_002331"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HCS2012034.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(4185..5567)
                     /gene="atpD"
                     /locus_tag="OQQ72_002332"
     CDS             complement(4185..5567)
                     /gene="atpD"
                     /locus_tag="OQQ72_002332"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCS2012035.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(5594..6457)
                     /gene="atpG"
                     /locus_tag="OQQ72_002333"
     CDS             complement(5594..6457)
                     /gene="atpG"
                     /locus_tag="OQQ72_002333"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HCS2012036.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHLYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(6508..8049)
                     /gene="atpA"
                     /locus_tag="OQQ72_002334"
     CDS             complement(6508..8049)
                     /gene="atpA"
                     /locus_tag="OQQ72_002334"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCS2012037.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(8062..8595)
                     /gene="atpH"
                     /locus_tag="OQQ72_002335"
     CDS             complement(8062..8595)
                     /gene="atpH"
                     /locus_tag="OQQ72_002335"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCS2012038.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(8610..9080)
                     /gene="atpF"
                     /locus_tag="OQQ72_002336"
     CDS             complement(8610..9080)
                     /gene="atpF"
                     /locus_tag="OQQ72_002336"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCS2012039.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(9142..9381)
                     /gene="atpE"
                     /locus_tag="OQQ72_002337"
     CDS             complement(9142..9381)
                     /gene="atpE"
                     /locus_tag="OQQ72_002337"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HCS2012040.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(9428..10243)
                     /gene="atpB"
                     /locus_tag="OQQ72_002338"
     CDS             complement(9428..10243)
                     /gene="atpB"
                     /locus_tag="OQQ72_002338"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HCS2012041.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(10252..10632)
                     /gene="atpI"
                     /locus_tag="OQQ72_002339"
     CDS             complement(10252..10632)
                     /gene="atpI"
                     /locus_tag="OQQ72_002339"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HCS2012042.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(11249..11872)
                     /gene="rsmG"
                     /locus_tag="OQQ72_002340"
     CDS             complement(11249..11872)
                     /gene="rsmG"
                     /locus_tag="OQQ72_002340"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCS2012043.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(11936..13825)
                     /gene="mnmG"
                     /locus_tag="OQQ72_002341"
     CDS             complement(11936..13825)
                     /gene="mnmG"
                     /locus_tag="OQQ72_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCS2012044.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(14204..14647)
                     /gene="mioC"
                     /locus_tag="OQQ72_002342"
     CDS             complement(14204..14647)
                     /gene="mioC"
                     /locus_tag="OQQ72_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HCS2012045.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVHFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(14737..15195)
                     /gene="asnC"
                     /locus_tag="OQQ72_002343"
     CDS             complement(14737..15195)
                     /gene="asnC"
                     /locus_tag="OQQ72_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HCS2012046.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQHPIMRTIKP"
     gene            15347..16339
                     /gene="asnA"
                     /locus_tag="OQQ72_002344"
     CDS             15347..16339
                     /gene="asnA"
                     /locus_tag="OQQ72_002344"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HCS2012047.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYLDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(16344..17795)
                     /gene="viaA"
                     /locus_tag="OQQ72_002345"
     CDS             complement(16344..17795)
                     /gene="viaA"
                     /locus_tag="OQQ72_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HCS2012048.1"
                     /translation="MLTQDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDTSGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLSSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(17789..19285)
                     /gene="ravA"
                     /locus_tag="OQQ72_002346"
     CDS             complement(17789..19285)
                     /gene="ravA"
                     /locus_tag="OQQ72_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HCS2012049.1"
                     /translation="MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFL
                     LGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTS
                     GYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEA
                     DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKE
                     IGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVD
                     LILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKT
                     ALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLS
                     KGGEIRGKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQL
                     EELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         4627 a         5117 c         4852 g         4773 t
ORIGIN      
        1 ggtcggcagc ccttttttat ctatgatagt gattactcaa ccgtaaccga ttttgccaag
       61 ttacgcggct ggtcaacgtc ggtgcctttg atcagcgcga catggtaagc cagcagctgc
      121 agcggaacgg tgtagaagat cggtgcaatc acctcttcca catgcggcat ctcgatgatg
      181 tgcatgttat cgctacttac aaaacccgca tcctgatcgg cgaagacata caactgaccg
      241 ccacgcgcgc gaacttcttc aatgttggat ttcagttttt ccaacagttc gttgttcggt
      301 gcaacgacga taaccggcat atccgcgtca atcagcgcca gcgggccgtg tttcagctcg
      361 ccagcagcgt aggcttcagc gtgaatgtag gagatctctt tcagcttcaa tgcgccttcc
      421 agtgcgattg ggtactgatc gccacggccc aggaacagtg cgtgatgttt gtcagagaaa
      481 tcttctgcca gagcttcaat gcgtttgtcc tgagatagca tctgctcaat acggctcggc
      541 agcgcctgca gaccatgcac aatgtcatgt tcaatggagg catccagacc tttcaggcga
      601 gacagcttcg ccaccagcat caacagcaca gttaactgag tggtgaatgc tttagtggac
      661 gccacgccga tttccgtacc cgcgttggtc atcagcgcca gatcggattc gcgcaccaga
      721 gaagaacccg gaacgttaca gattgccagc gaaccaaggt aacccagctc tttcgacaga
      781 cgcaggcccg ccagggtatc cgcggtttcg ccagactgtg acaaggtgat catcaggctg
      841 ttacgacgca cggcagattt acgatagcgg aattcagagg cgatttcgac gtcgcacgga
      901 atacctgcca gcgattcaaa ccagtagcgg gaaaccatac cggagttata agaagtacca
      961 caggcgagga tctgaatatg ctcaaccttc gacagcagtt cgtcggcgtt cggtcccagc
     1021 tcgcttaaat caacctgacc gtggctgatg cgcccagtaa gggtgttttt gatcgcgttc
     1081 ggctgttcgt agatctcttt ctgcatgtag tgacggtaaa tacctttatc gcccgcgtca
     1141 tattgcagat tggattcgat atcctgacgt tttacttccg cgccagtttt atcgaagatg
     1201 tttaccgaac ggcgagtaat ttccgcaata tcgccctctt caaggaagat aaagcgacgg
     1261 gtcaccggca gcagcgccag ctggtcagaa gcgataaagt tttcgcccat acccaggcca
     1321 atcaccagcg gactaccaga acgtgccgcc agcagggtat ccgggtgacg ggagtccatg
     1381 atcactgtac cgtacgcacc gcgcagctgc gggatagcac gcagaacagc ctcacgcaga
     1441 gtcccgcctt gttttagctc ccagttcacc agatgggcaa tcacttcggt gtcggtttca
     1501 gaaacgaagg tatagccacg cgcttttaac tcttcacgca gcggttcatg gttttcgatg
     1561 atgccgttat gcaccaccat aatgtgttca gaaacatgcg gatgcgcgtt agcttctgaa
     1621 ggttcaccgt gggtcgccca gcgagtgtga gcaataccgg tgccgccatg cagaggatgt
     1681 tcttccgctg cctgagccag catctggact ttaccgaggc gacgcaggcg ggtcatatga
     1741 ccttccgcat caacaacggc cagaccagca gagtcatatc cgcggtattc cagacgacgt
     1801 aaaccttcaa gaaggatttc tgctacatca cgttgcgcga tcgcgccaac aattccacac
     1861 atagtttttg attccgattt atatcgttgt cggtcaacct gtatgcccgt tttttcgggc
     1921 gccccgagcc ttgtagagag tggggttatt tttatagtta cttcttgtgg gagggagatt
     1981 atgttatctc ctcatcccag atgaccggat tacccggcca gaattacttt ttctttaccg
     2041 gacgacgcca gccttctttc tgagtctgcg gcacacggct gatagctaat gcattttcgc
     2101 cgacattacg cgtcacagtt gtacccgcag caatggtcgc gcctttgcct actgttaccg
     2161 gggccaccag ctgagtgtcg gaaccgacaa acacatcgtc gccgataatg gtcttaaatt
     2221 tattcgcacc atcgtagttg caggtaatgg ttcccgcgcc gatgttaacg ttatcgccaa
     2281 tttccgcatc gcccaggtaa gtcagatgac cagctttcga gcctttaccc agacgcgctt
     2341 ttttcatctc aacaaagtta ccgacgtgtg caccttccag caactcagca ccaggacgca
     2401 gacgggcaaa cgggccaata gtacaggccg ctgccagatt cacgtcttcc acaacggtat
     2461 acggactgat ttcgcaatca tcgccaatca cgctgttttt aatcacgcaa ccggtgccga
     2521 ttttcacgcg atgaccgaga gtcacgttgc cctcgatgat aacgttagta tcaatttcaa
     2581 catcgcgccc gtgagtaagc gtaccgcgca gatcaaaacg cgccggatcg cgcagcataa
     2641 cgcctgctaa cagcagtttt tcagcctgtt cggactggta aacgcgctcc agacgggaga
     2701 gttgcaggcg gttattcaca ccttctactt cgcttaaacg ttgcggatga acggcgacga
     2761 tttcacgccc ttcctgatac gccagcgcaa taatgtcggt gatgtagtat tcgccctgag
     2821 cattattgtt ggtcagcttc gccagccagc gtttcatatc tgcgccgtta gagatcagaa
     2881 tgccggtgtt gatctcctga atctgacgct gctcgtcggt ggcatctttg tgctcaacaa
     2941 tgccggtaac tttgccattt tcacgggtga tacgtccata accggtcgga tcatccagtt
     3001 tcaccgtcag cagaccaatg ccaccctgcg gtttagcatc acgcaggcgc tggagtgttt
     3061 cgacagagat cagcggcacg tcgccgtaga gcattaaaat gtcttcatca tcggcaaaga
     3121 aaggtgcggc ctgctgcatt gcatgacccg tacccagctg ctctgcctga agcacccagt
     3181 taaggttgtc gtctttcagc gcctgtttaa gcagatcgcc gccgtgaccg tacaccaggt
     3241 gaacgtgcgc tgcgcctaat tcattcgcag catcaatgac atgctgaacc atcgctttcc
     3301 cggcaagggt atgcagcact ttcggaagat cggaatacat gcgcgtgcct ttgcctgcgg
     3361 caaggatcac tacgctcata gcattattca acatacgcgt cctgactgta atttgagaac
     3421 gaatttaaac cgcttcacct tgaaaaaact acattttttt catcgtgaaa tggacagagg
     3481 ataaattgtt caataacgga ttatccccgc tgacgaaagt gccattttcg accatcgtca
     3541 cgccttttgt ctgcagaaaa ttaaggcagt accttcattt aagcgtcagg tggatgtttt
     3601 tgctcttatt tcgatcaatg aataaacggg aaaacagggg tgttttatat cagcaggatc
     3661 tatgtgaacg ctcttcagga cggatcacgc gtaaaaaaaa accagcctgt ttccagactg
     3721 gcttttgtgc ttttcaagcc ggtgttacat cgcttttttg gtcaactcga taacgcgcag
     3781 ctgcgcgatc gctttggcca gttccgcaga cgcctgagcg taatctacgt cgccgtgaga
     3841 gctgctaatg tgctcttcag ccttacgttt cgcttccatg gctcgcgctt cgtcgagatc
     3901 ctggccgcga attgcggtgt cggccagaac ggtcacgttg ccagactgca cttcaagaat
     3961 gccgccagac agatagataa actcttcgtg accgtgctgt ttcacgatgc gaatcatacc
     4021 aggcttaatg gcggtgagca gcggtgcgtg gccagggtag atccccagtt caccttcgct
     4081 acccgttacc tggattttct cgaccagacc agagaacatt tgttgctctg cgctgacgac
     4141 gtccaggtgg taagtcattg ccatatcacc ctccgattaa ggcgttaaag ttttttggct
     4201 ttttccacag cttcttcgat ggaaccgacc atgtagaacg cctgctccgg caggtgatcg
     4261 tattcgcctt ccatgatgcc tttaaagcca cggatggtgt ctttcaggga gacgtattta
     4321 cccggagaac cggtgaatac ttctgccacg aagaacggct gggacaggaa gcgctggatc
     4381 ttacgagcac gcgctaccac cagtttgtct tcttcagaca gttcatccat acccaggatg
     4441 gcgatgatgt ctttcagttc ctgataacgt tgcaggatgg actgaacgcc acgcgcggtg
     4501 tcgtagtgtt cctgaccaac caccagcggg tccagctgac ggctggtgga gtccagcggg
     4561 tcaacggccg ggtagatacc cagagacgcg atctgacggc tcagtaccac ggttgcgtca
     4621 aggtgcgcaa aggtggttgc cggagacggg tcagtcaagt catccgcagg tacgtatacc
     4681 gcctgtacgg aggtgataga accagttttg gtggaggtga tacgttcctg cagaacgccc
     4741 atctcttccg ccagggtcgg ctgataacct accgctgaag gcatacggcc cagcagtgcg
     4801 gatacttccg taccggccag ggtgtaacga tagatgttgt caacgaacag cagaacgtca
     4861 cgaccttcgt cacggaattt ctcagccatg gtcagaccgg tcagagcaac gcgcagacgg
     4921 tttcccggcg gctcgttcat ctggccatac accagggata ctttgtcgat aacgttggag
     4981 tcggtcattt cgtggtagaa gtcgttaccc tcacgagtac gttcacctac gcccgcaaac
     5041 acagagtaac cggagtgctc gatcgcgatg ttacgaatga gctccatcat gtttacggtt
     5101 ttacctacac ccgcaccacc gaacagacca actttaccgc ccttagcgaa cggacacatc
     5161 aggtcgataa ctttgatacc ggtttccagc agttcctgag agtttgacag ctcttcgtag
     5221 gaaggtgctg cgcggtgaat cgcccaacgc tcttcttcac cgatctcgcc tttcatgtcg
     5281 accggttcac ccagtacgtt catgatacgg cccagagtcg ctttacctac cgggacttcg
     5341 atcgggtgtt cgaggtcttt tacatccaga ccgcgacgca gaccgtcgga ggaacccatt
     5401 gcgatggtac gcacgatacc gccgccgagc tgctgctgaa cttccagcac cagacgctca
     5461 ttaccatttt gcacctcaag agcatcgtac acgcgcggta cggcatcctg agggaattcg
     5521 acgtcaacta cggcgccgat tacctggaca atctttccag tagccatctt aaatcctcta
     5581 cgaaataacc tgtttaaacc gcggcggccc ccgagacgat ctcggtgagt tcctgagtaa
     5641 tgctggcctg acgagctttg ttgtatacca actgcagctc tttaatcagg ctgccgccat
     5701 tgtcggtcgc ggctttcatc gccaccatac gggcggcctg ctcgctggcc aggttttcaa
     5761 ccacgccctg ataaacctga gattcgacat aacgacgcag cagggtatcc agcaacgcct
     5821 tcggatcggg ttcgtacagg taatcccagg atttatgttt cagatcatca tcatctgatg
     5881 ccggtaacgg cagcagctgg ctgatggtcg gaacctgaga catggtgtta ataaatttgt
     5941 tgctgacaat gtaaagcttg tccagacggc cttcgtcgta ggcctgcaac atcactttta
     6001 ccggaccgat cagttcggac agggaagggt tatcccccat gccggtgacc tgggcaacaa
     6061 cattgccgcc cacggagttg aagaacgaca cgcctttcga gccgatcatt gcgaggtcgc
     6121 attgaacgcc tttgtcggtc caggtcttca tttccgccag cagttttttg aacaggttaa
     6181 tgttcaaacc accgcacaaa ccacggtcgg tcgacaccac caggtagccc acgcgtttaa
     6241 cgtcgcggtc ttccaggtaa aggtgcttat attccagatt accatgtgca aggtgaccaa
     6301 tcactttgcg catggtttct gcataaggac ggctggccgc catgcgatcc tgcgatttac
     6361 gcattttgga agcggcgacc atctccatcg ctttagtgat cttttgcgtg ttctggacgc
     6421 ttgcgatctt actacgtatc tcttttgcgc cggccatgag cttctcctca atgccttgcg
     6481 gcctgcccta aggcaagccg ccagacgtta ccaggattgg gttgctttga aggaatcgag
     6541 gatgcctttc agtttgcctt cgatttcgtc gttgtagcca ccggtctggt tgatctcttg
     6601 catcaacgga gcgtgatcac ggtcgacgta agccagcaga gcggcttcga agctgccaat
     6661 tttcgacagt tcaacatccg ccaggtaacc acgttctgct gcgaacagaa ccagagactg
     6721 ctgcgcaacg gacatcggcg catactgttt ctgtttcagc agttcggtca ctttctgacc
     6781 gtggtcaagc tgcttacgtg ttgcatcgtc aaggtcggat gcaaactgag agaacgctgc
     6841 cagttcacga tactgtgcca gagcggtacg gataccaccg gacagttttt tcatgatctt
     6901 ggtctgtgct gcaccaccaa cacgggatac ggaaataccc gggttaaccg caggacgaat
     6961 accggcgttg aacaggttgg tttccaggaa gatctgacca tcggtaatgg agattacgtt
     7021 ggtcggaacg aacgcagaaa cgtcacccgc ctgagtttcg ataatcggca gtgcggtcag
     7081 agaaccggtt ttccctttca cttcaccttt ggtgaaggct tcaacgtatt cggcgttaac
     7141 acgtgcagca cgctccagca gacgagagtg gaggtagaaa acgtcgcccg ggaatgcttc
     7201 acgtcctggc ggacgacgga gcagcaggga gatctgacgg taagcaacag cctgtttaga
     7261 caggtcatcg taaatgatca gcgcatcttc accgcggtca cggaagtatt cgcccattgc
     7321 gcaaccggca tacggtgcca ggtattgcag tgcagcggat tcagacgcgg ttgctaccac
     7381 aacgatggtg ttagccagtg cgccgtgctc ttccagttta cgtaccacgt tagaaatggt
     7441 ggacgctttc tggccgatag cgacatagat acatttgata ccggaatcgc gctggttgat
     7501 gatggcatcg atagccagtg cggttttacc tgtctgacgg tcaccgatga tcaattcacg
     7561 ctgaccacga ccgattggga tcatggagtc aacggcttta taaccggtct gtaccggctg
     7621 atctacggac tgacgttcga taacgcccgg agcgattgct tctacagcag agaagccgtc
     7681 gtgatccagc ggacctttac cgtcgattgg tgcacccaga gtgttaacca cacggcccag
     7741 caggccacgg ccaaccggaa cttccaggat acggccagta cacttaactt tcatgccttc
     7801 ggcaaggtca gcgtacggac ccataacaac cgcacctaca gagtcgcgct cgaggttcag
     7861 tgcgatagcg taacggttac ccggcaggga gatcatttca ccctgcatac aatcggccag
     7921 gccgtgaatg cggataacac cgtcacttac agaaacaata gtaccttcgt tgtgagcttc
     7981 actcacaaca ttgaactgag caatgcgctg cttgatcagt tcgctgattt cggtggaatt
     8041 cagttgcatg ctccagtccc cttaagactg caagacgtct gcaaggcgct caagacgacc
     8101 gcgtacgctg ccatcaatga ccatatcacc cgctcggatg ataacgcctg ccattacaga
     8161 cttatcgatt ttgcaattca gcttaacttt gcgtgacaga cgtttttcca tcgcagcaga
     8221 aattttcgcg agctgttgtt cactcagtgc ggcagcggaa atgacgtcta cctcagcggt
     8281 agcctcactc acggcacgaa ggtgaataaa ctgctccaga acatccggga gcgcgttaag
     8341 acgaccattt tcagccatta cccgaatcag gttctgaccg ttttcgtcca gttgctcacc
     8401 acaaactgcg ataaacgact cggcgagcgt ttctggcgca agcgcgccag agagaagctc
     8461 tgccatttgt tcgtttttgg ttacctcggc ggcaaacgcc agcatgtcct gccagcgttc
     8521 tacactttgg tgttcgacgg caaagtcaaa agctgctttg gcgtaggggc gagctaccgt
     8581 aataaattca gacatcagcc cctccctcct tacagttcag cgacaagttt atccacgatg
     8641 tcgctgttag cagcttcatc cacggaacgt tcgatgatct tctcggcgcc agcaacagcc
     8701 aggatagcaa cttgcttacg cagctcttca cgggcacgtt tacgctcggc ttcaatttct
     8761 gcctgcgcct gggccacgat tttagtacgt tcctgttctg cctcagcttt cgcttcgtcc
     8821 agaatctgcg agcggcgttt gttcgcctgc tcgatgatta cctgggcttc cgctttcgct
     8881 tttttcagct ggtcggtcgc gctggccttt gcaaggtcaa ggtccttatg tgctcgttct
     8941 gcggaagcaa ggccgtcagc aatttctttt tgacgttttt cgatggctgc cattaatggc
     9001 ggccatacgt acttcatgca gaacagaacg aacaggacaa acgcgatggc ctggccgagg
     9061 attgttgcgt taagattcac agcacaatgc ctctatttag ttaacgttct gatattgctc
     9121 tttaaataaa agcaacgctt actacgcgac agcgaacatc acgtacagac ccagacctac
     9181 agcgatcatc gggatagcat ccaccagacc cataacgata aagaactgag tacgcagcag
     9241 aggaatcaga tcaggttgac gcgctgcgcc ttccaagaat ttacccccga ggatgccgat
     9301 accgatcgca gcaccgattg ccgccagacc catcatcaca gcggcagcca tgtacagcag
     9361 atccatattc aggttttcca tgacagtctc cagtttgttt cagttaaaac gtagtagtgt
     9421 tggtaaatta atgttcttca gacgccatcg acagatagac gatcgtcaga accatgaaga
     9481 tgaaggcttg cagcgtaatg atcaggatgt ggaaaatggc ccacggcaca ttcaggatcc
     9541 actgtgacca ccacggcaac agaccagcaa tcagaatgaa aatcagctca ccggcataca
     9601 tgttaccgaa cagtcgcaaa ccgagtgaaa ctggtttgga cagcaggctt accccttcaa
     9661 ggattaagtt gacaggaatg aacgcccagt gattgaacgg ctgcagcgtc aactctttcg
     9721 tgaagccgcc gatgcctttc attttgatgc tgtagaacag aatcaggata aatacgccca
     9781 atgccataga cagcgttacg ttcacgtccg cagacggaac cacacgcagt gcaggcagac
     9841 ccagtacatg ttcagcaatg tacggcagca ggtcgatagg cagtaaatcc atcaggttca
     9901 tcaggaatac ccagacgaag atcgtcaggg ccagcggagc aatcagcttg cttttgccat
     9961 ggtacatgtc tttcacgcta ccattaacaa agccgatcac cagctcaatc gcggtctgaa
    10021 acttacctgg cacaccgctg gtcgcctttt tggctacgct acggaataaa accaggaaca
    10081 acagacccag caccaccgag aagaacatgg agtcaatatt gattgtccag aaggtggctg
    10141 gggggttttg tggatccacc agcgagaatg tacgcaggtc cagctgaagg ttattcaggt
    10201 ggtgtcctat gtaatcctgc ggcgtcatat tttctgaagc catgatgcct tttacccttt
    10261 gttgttaatt acagccggtg ccagtatctg aaccaccagc accaaaaccc acgtaacgat
    10321 cagcggcaag aataccgcct ttaaaaccgc caacgccacc accagtaaca ccaacatcgc
    10381 cagaactttg aaagcttcgc caaatgcgaa tgtccaggcc acccggcctt tcgctggtgt
    10441 atgcgcctgg tgacgccaag caaatatcat aaacaaaacg ttaggcagaa agactgccag
    10501 gcccccgctt attgcagaga cgccccagaa ggggtctttg aggctgaaca gcaatccact
    10561 tgctatcacc accagtaact gaacgagcag aagcttccga gcaacgtttc gactcacgag
    10621 cgacacagac atcacgtttt ttactcctgc tcccttcgag gtatgccgcg tgtcgtataa
    10681 aactttcttt aaggcttaga gtcaagcatc aaaaagcggt caaattatac ggcgcgcccc
    10741 cgtgatttca aacaataagt agccaaaagg tgaataaatg tttaaatatt tttccagtgc
    10801 atacaattgc gacttttcta ctaaccctgt tcgatcatga aaaactgtaa ataacgcgta
    10861 aacactggtg ataaagcgtg cttcagatca catattgcgc atgttcgcgc acagcatatt
    10921 tatttacttg gcaaatgatg cctttgcaag tttatgatat ttcagtctaa aaacagatac
    10981 tgttttaata aatgacattt acacaacaaa aaccacccat tgacattttt aataatgttt
    11041 tagcagccaa tgatggttct tagcgccgat ttttagcaga ctgatatttt cactaatgac
    11101 ttattttctg cttaccaaaa aaagccacgt tatcttgttg atgcaaaaga gtgaacgtgg
    11161 cgttaaatgt aaccagttat atcagtagaa aacctggttg ttgttaacag tctaaccggt
    11221 caatttttta tgattttttt gataaaaatt aaattttatt tgctttaatc accaccagat
    11281 gacgttcgcc atccagggct ggaacctgaa gtttaaccac tgattcgacc tgatattctt
    11341 cgggcaacaa agcgatttca tcttccggca tttgcccttt cagcgcgtag aaacggcctt
    11401 gctcaccagg aagatggtgg caccagctca ccatatcgtt cagagaggca aaagcgcggc
    11461 taattacgcc atcaaatggc ggctctgaag gaaactcttc taccctgctc tgtacaggtt
    11521 caatattctc cagtttaagc tcatgttgca cctgacgaag gaaacgcacg cgtttaccaa
    11581 ggctatccaa cagagtgaaa tgggcttcag gacgcacgat agagagtgga atgcctggca
    11641 gtcctggtcc ggtgccgaca tcgataaacc gttcaccttg cagatacggt gccaccacaa
    11701 tgctatcgag aatatggcgt accagcatct cattaggatc gcggaccgaa gtcaggttgt
    11761 acgctttgtt ccatttatgc agcatattca cgtaggcaat aagctggttt ttctggtgat
    11821 cggtaagcga aatacctgcg tctttcagca gtaaggagag tttgttgagc acggtgatta
    11881 cctgttcttg atgcgttgcc tggtaagcgg gtgcttacca ggcattttta atgcgttatg
    11941 cgctacgacg cagcataccc tgttttttca gccacaccag cagaatggag atagccgcag
    12001 gcgtgacgcc agaaatacgc gaagcttggc cgatagaggc tggtttgtga tcgttaagtt
    12061 tggcgatcac ttcgttagaa agaccggata cctggcggta atccagtgtc gcgggtagca
    12121 gggtgttctc gttacgcagc tgcttttcga tctcatcttg ctggcgcgcg atataacctt
    12181 cgtatttaac ctgaatctca acctgttccg ccgcctgttc gtctgtcaac gcaggggcaa
    12241 acggcgtcag cgtggttaat ttttcataag tcatttccgg acgacgcagc agatcttcac
    12301 cactggcttc acgggaaagc ggcgcagtca ggtgagcatt cacttcggct gcagcttccg
    12361 ccgacggggt tacccaggtc gatttcagac gctgacgctc acgctcgata ttctcaagtt
    12421 tctcgttaaa gcgcgcccaa cgttcgtcat ccaccaggcc cagttcacga ccgatttcag
    12481 tcaaacgcag atccgcatta tcttcgcgta gcatcagacg atattctgcg cgcgaagtaa
    12541 acatacgata cggttctttg gttcctaaag tgcacaggtc atcaactagt acgccgagat
    12601 acgcctgaga acgtgccgga gcccaacctt ctttgtcagc agacagacgg gcagcgttaa
    12661 gaccggccag caaaccttgc gcagcggctt cttcgtaacc ggtagtgccg ttaatctgac
    12721 cagcaaagaa cagcccctgg ataaacttgc tctccagcgt cggtttcagg tcgcgaggat
    12781 cgaagaagtc atactcaatg gcataacccg gacgcacgat cttcgcgttt tccatcccct
    12841 gcatagagcg gacgatttgc atctgcacat cgaacggcag gctggtggag ataccgttcg
    12901 gataaatttc attagaggtc agtccttccg gttcaaggaa gatctgatgc tgatttctgt
    12961 cggcgaagcg catgactttg tcttcgatcg acgggcagta gcgtgggccg acaccttcga
    13021 tcacccctgc atacattggg ctacgatcga ggttactgcg gatcacatca tgggttttct
    13081 cgttggtatg agtgatataa cacggcacct gctggggatg ctgggacgca ttgcccataa
    13141 acgagaatac cggcattggg ttatcgccat gctgttgcgc cagcacacta aagtcgatag
    13201 ttcgagcatc aatacgcggt ggtgtcccgg ttttcagacg accaacgcgc agcggcagtt
    13261 cacgcaaacg gcgagaaagc ggaatggacg gcggatcacc agcacggcca ccgctgtaat
    13321 tatccagacc gatatgaatt ttaccgtcga ggaacgtccc aacggtgagc acgacggctt
    13381 tggcacggaa cttcagtccc atttgggtaa cagcaccgac cacgcgatcg ttttcgacaa
    13441 taagatcttc aaccgcctgc tggaagatca tcaggttcgg ttggttctcc agcgccgtac
    13501 gtaccgcctg acggtagagc acacgatccg cctgagctcg ggtagcgcga accgccggtc
    13561 ctttgcttgc gtttagtatc ctaaactgga tacccgcttg atcgatcgct ttcgccatca
    13621 gaccgccgag tgcatccact tcttttacca gatgtccctt cccaataccg ccgatcgccg
    13681 ggttgcagct catctgcccc agagtgtcga tattgtgtgt caaaagcaga gtctgttgac
    13741 ccatacgcgc cgcggccatc gcggcctcgg tgcctgcatg acccccgcca atgatgatga
    13801 cgtcaaaagg atccggataa aacatggtga ttgcctcgca taacgcggta tgaaaatgga
    13861 ttgaagcccg ggccgtggat tctactcaac tttgtcggct tgagaaagac ctgggatcct
    13921 gggtattaaa aaggagatct atttatttag agatctgttc tattgtgatc tcttattagg
    13981 atcgcactgc cctgtggata acaaggatcc ggcttttaag atcaacaacc tggaaaggat
    14041 cattaactgt gaatgatcgg tgatcctgga ccgtataagc tgggatcaga atgaggggtt
    14101 atacacaact caaaaactga acaaccgttg ttccttggat aactaccggt tgaaccaagc
    14161 ttcctgacag agttatccac agtagaacgc acgatctgta tacttatttg agtaaattaa
    14221 tccacgatcc cagccattct tctgccggat cttccggaat gtcgtgatca agaatgttga
    14281 tcttcagtgt ttcgcctgtc tgttttgcac cggaattttt gagttctgcc tcgagtttat
    14341 cgatagcccc acaaaaggtg tcatattcac gactaccaat accgattgcg ccaaagtgga
    14401 ccgcagaaag atcgggcttc tgttcctgca atgcttcata gaaaggagaa aggttgtccg
    14461 gaatatctcc ggcaccgtgg gtggagctga taatcagcca gatccccgag gcagataaat
    14521 cttccaacag cggaccgtgc agcgtttcgg tggtaaaacc cgcctcttcc agcttttcag
    14581 ccaggtgttc tgctacatat tcggcaccgc cgagggtgct gccgctgata agagtgatat
    14641 ctgccataaa ccgccacctt tattaagagt ggcgtattgt acgctgtgaa cgcgttggga
    14701 tctacctgtg gaaaagtatg ggattaaaaa agccgatcag ggcttgatag tacgcatgat
    14761 cgggtgttgc aggacgatca atgtctcggt ggactgaatt tcatcaattg tttggatctt
    14821 gttgataagt acatgctgga gagcgtcgat cgaacggcac attactttta taaagatgct
    14881 gtagtggcct gttgtgtaat aggcttcagt gacttcatca aggctttcca gctttgccag
    14941 cgcggaaggg tagtctttgg cgctctttaa tataatgccg ataaagcagc ctacgtcata
    15001 accgagctgc ttcgggctga catcaatacg cgccccggta atgatccccg cctgcttcat
    15061 tttctctacc cgaacgtgaa tcgtccccgg actgacgcca aattgtttcg ccagttcggc
    15121 gtaagcggtg cgcgcattgc ccattaatgc ttccaggatg ccacggtcca gattgtcgat
    15181 cagataattt tccataggat tttcttatgc agattgatga ttcattctat tttagccttc
    15241 ttttttaatg aatcaaaagt gtgttaggct ttttattgaa tgattattgc atgtgtgtcg
    15301 gtttttgttg cttaatcata agcaacagga cgcaggagta taaaaaatga aaaccgctta
    15361 cattgccaaa caacgccaaa ttagcttcgt gaaatctcac ttttctcgtc aactggaaga
    15421 acgtctgggg ctgatcgaag tccaggcacc gattcttagc cgtgtggggg atggcacgca
    15481 ggataacttg tcgggctgtg aaaaagcggt gcaggtaaaa gtgaaagctc tgcctgatgc
    15541 ccagttcgaa gtggttcatt cactggcgaa gtggaaacgt cagaccttag ggcaacacga
    15601 cttcagcgcg ggcgaagggc tgtacacgca catgaaagcc cttcgccccg atgaagaccg
    15661 tctttctccg ttgcactcgg tctatgtaga ccagtgggac tgggaacgcg taatgggcga
    15721 cggtgagcgt caattctcga ctctgaaaag cacggtagag gcgatctggg cgggaattaa
    15781 agcaaccgaa gctgcggtta gcgaagagtt tggcctggca ccgttcctgc cggatcagat
    15841 ccacttcgta cacagccagg agttactgtc tcgttatctg gatctcgatg ccaaagggcg
    15901 tgagcgggcg atagcgaaag atcttggcgc ggtattcctt gtcgggattg gcggcaagct
    15961 gagcgatggt catcgccacg acgtgcgcgc accggattat gatgactgga gcaccccgtc
    16021 agagctgggt catgcgggtc tgaacggcga tattctggtg tggaaccctg tactggaaga
    16081 tgcgtttgag ctttcttcca tggggatccg cgtggatgcc gacacgctga agcatcagct
    16141 ggcgctgacc ggtgatgaag atcgtctgca gctggaatgg catcaggcgc tgctgcgcgg
    16201 tgaaatgccg cagaccatcg gcggcggtat cggccagtct cgtttgacta tgctgctgct
    16261 gcaactgccg catatcggcc aggttcagtg tggagtatgg ccagctgctg ttcgcgagag
    16321 cgtcccttct ctgctgtaat aatttatcgc cgccagcgtc tgagcaggcg gcttcgcatc
    16381 ccggtatcaa agcgccagat atgatcgaaa atgcgcatga tgccgggttt gccgtgtgcc
    16441 gacatcgcca cggcatgaaa gcgatgctga tgtacccgct gcagctcttt cactttactc
    16501 gtcacgtcgt caggcaaccg ctgagcgata aaatcagaaa tcaccaccgc atcggcatca
    16561 aaccattccc tgctttgcaa gcgttccata atggcgcgaa aacaactggc aagatcggtg
    16621 ccgccacgaa actgctggct taaaaaacgg attgcttgtt cgatgccttg tgggcctgaa
    16681 agctcataac ggacgatctc ggtggaagat agcataatat agcagcgccg gttttctgcg
    16741 agagcaatgc gcatcaaggc caggcagaac gctttcgcac actgttcatt aaagccgccc
    16801 attgagccgg aagtatccac acagacaata aacggcccgc gcggctgttc atcgtaatct
    16861 ttatgtacca ccggacgttc gatcactttt tcacgccacg actcaccgtg caggcgatag
    16921 gtgagcaact gtttttccac cagccgacgg taaaactcat actccagttc cgttatccct
    16981 agtgtcgcca gttctggcgg caggagacgt aaaatatcat cgctttgttg cagaccatca
    17041 acctgctcag gaaccgtcgc cggttcgcgc accatggtgc ggaaggtttc catctgcgca
    17101 tcgttgcgcg gtattgattt ggcttcccga gaacgcccca gctgctctgc caggcgtttc
    17161 agttccggct gttcgttaag aaattcaccg tatttcacaa tcaactgata gtcgccacgt
    17221 ttaagctggc cggcgctcat atcccacaga cgaccagctg cggtattgtt atctgcgaga
    17281 atcggttcaa gttgtccgct cagcgtcatg cgttcctgaa cttcacttaa cagttgttcg
    17341 cgttcttctt ctaatagctg ttgatttaac gtcgttgctt gcacgatcag acttaaacgc
    17401 cagcgctgga gaaaaagcgt gtgtaacgct gaagttattg tgctgttagc atcaaccaac
    17461 tgccgggctt gttctgccca tggggaattc agacgatgca gtaagtccag gatctgtggt
    17521 agctgcacaa taaactgcgg cgtggagagg agctggcttt gctgatagca catcacctct
    17581 tcggtgagtt ctggcgggac tcgggcatct ttcagccgac tgcgcagcgc ctcacgccag
    17641 cggggaacat catcagtgat tgctgccttc agtcgtggga atttttcaaa gaagaccgcc
    17701 agctgcggtg aggccagcag tgcgatgatc atctcttcga tcaatccctc ttcgctgacg
    17761 gccagcatca cattaagcgt atcctgcgtt agcattgttg tgcctggcga atctgtgcac
    17821 cgacatcctg taggctggct tcaatgcgac ctaaccagtc gccagggata aacagacatt
    17881 tttgctgttc gctgaataaa gcgtgttgct tacgccagtc gctttcaagc tcttccagtt
    17941 gttgttttat ttcacctggc agaccttcag ccgatgaacc gggaagtgcc agcgtactgc
    18001 cttgtaaact tacatcgcgt acaacaagat gttgggtgct atcaacttcc agattcagtt
    18061 tctgggcaaa gccgataccg ttcagtttgc cgcgaatttc accaccttta ctcagccact
    18121 gttccagcgc gctacgctca aaggagatat gaaccacttc catatcatgc agttttaacg
    18181 gtttttgcag cagcagagtc agagtggaag cagtaacgtt aacagggagt tgatactgct
    18241 gacgacggct aaaaatgccg cccagacgaa ttaccgttaa ggctgtttta tcgctttgtt
    18301 gctgctgaag ttgcaggtga cgttgcacaa tcgcgcctag gcgggtcaac atcccttgct
    18361 gttgccaggc gtgaccggtc atcaatacat caatttgttg ttgtatcaaa ttcaggcttt
    18421 gcgcgtcata ccacaggcaa tctttcagca aaatgagatc taccggggca acagcactgc
    18481 gaccgctaaa aaaggcgctg gcctgcaata atcggatcgc ttttttccag cgacgatccg
    18541 agacataagg cgcatccggt aatttatcca gttgctggcg cagcataaaa atcagctcaa
    18601 atacatgatc gggcagcgta atttcaccaa tctctttctg ccagcgttca tattcttcat
    18661 ctgtgacctg caaggcatca ggaaccggat tgtcgttttc atcctgttga ctggtcagca
    18721 tggagcggaa attcgcttta tcctgcactt tatctaacca cagacgaatc agcatgcggt
    18781 catataacgc ttccagactg ctgtctgctt ccggcagctc gttggaggcc gccaccagca
    18841 gacgcatcgg gattttttct acgtgtgcac cgttgcggaa ctggcgctcg ttaatggcgg
    18901 tgagcaaggt attaagaatt gccgggcccg ctttccagat ctcatccaga aagacaattt
    18961 ctgcttccgg caggtaaccg ctggttaaac gttcatagcg cccttcatct tttagcgcct
    19021 gaatagaaag gggaccaaaa acttcttccg gcgtggagaa gcgggtcatc agatattcaa
    19081 acgcgcgggc attctgaaag gcgaatttta agcgccgggc gatcaaactt ttggcaatac
    19141 ctggcgggcc aaggaggaac acactttcac cacttaatgc cgctaataaa cacaagcgga
    19201 tggcgtggct acgttcataa agcccctttt ccaacgaact gctcaggcgg gaaattcttt
    19261 ccgctaataa atgagggtga gccataatga agtggcgtcc tttcgtcaaa agttctgcgt
    19321 aaattgcgag tatagacgtt tcttgctggt ggctaaaata gtctcaaag
//
LOCUS       DAJVUY010000076        19313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.076, whole genome shotgun sequence.
ACCESSION   DAJVUY010000076 DAJVUY010000000
VERSION     DAJVUY010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.076"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..732
                     /gene="rihB"
                     /locus_tag="OQQ72_002347"
     CDS             <1..732
                     /gene="rihB"
                     /locus_tag="OQQ72_002347"
                     /EC_number="3.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosylpyrimidine nucleosidase"
                     /protein_id="HCS2012050.1"
                     /translation="IMRKQIVADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMA
                     SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPE
                     AARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFEN
                     YGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTK
                     VGITIDTDWFWGLVEECVRGYIKTH"
     gene            832..2082
                     /locus_tag="OQQ72_002348"
     CDS             832..2082
                     /locus_tag="OQQ72_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS2012051.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALI
                     NGIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVA
                     YLNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRVPEIAQLGL
                     RALAAATLSNLMSATIAGFFIGLA"
     gene            complement(2138..3226)
                     /locus_tag="OQQ72_002349"
     CDS             complement(2138..3226)
                     /locus_tag="OQQ72_002349"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS2012052.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGIADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGEQFLLTAPAHTTVDSFGAGDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="OQQ72_002350"
     CDS             complement(3229..4086)
                     /gene="nfo"
                     /locus_tag="OQQ72_002350"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HCS2012053.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(4160..5209)
                     /locus_tag="OQQ72_002351"
     CDS             complement(4160..5209)
                     /locus_tag="OQQ72_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HCS2012054.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSVIA"
     gene            5309..6190
                     /locus_tag="OQQ72_002352"
     CDS             5309..6190
                     /locus_tag="OQQ72_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2012055.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANIPR"
     gene            6395..7864
                     /gene="lysP"
                     /locus_tag="OQQ72_002353"
     CDS             6395..7864
                     /gene="lysP"
                     /locus_tag="OQQ72_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HCS2012056.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            8157..10137
                     /gene="cirA"
                     /locus_tag="OQQ72_002354"
                     /pseudo
     CDS             8157..10137
                     /gene="cirA"
                     /locus_tag="OQQ72_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="OQQ72_002355"
     CDS             complement(10169..11005)
                     /gene="yeiG"
                     /locus_tag="OQQ72_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS2012057.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            11263..11931
                     /gene="folE"
                     /locus_tag="OQQ72_002356"
     CDS             11263..11931
                     /gene="folE"
                     /locus_tag="OQQ72_002356"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCS2012058.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            11948..13105
                     /locus_tag="OQQ72_002357"
     CDS             11948..13105
                     /locus_tag="OQQ72_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HCS2012059.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            13247..14287
                     /gene="galS"
                     /locus_tag="OQQ72_002358"
     CDS             13247..14287
                     /gene="galS"
                     /locus_tag="OQQ72_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HCS2012060.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN
                     LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT
                     PDMPGGEAAMVELLGRNLQLTAIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP
                     IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN
                     AAAITNSTNQAM"
     gene            14567..15565
                     /gene="mglB"
                     /locus_tag="OQQ72_002359"
                     /pseudo
     CDS             14567..15565
                     /gene="mglB"
                     /locus_tag="OQQ72_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
     gene            15626..17146
                     /gene="mglA"
                     /locus_tag="OQQ72_002360"
     CDS             15626..17146
                     /gene="mglA"
                     /locus_tag="OQQ72_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HCS2012061.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL
                     MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ
                     RSVMDNMWLRRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI
                     AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE
                     VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ
                     PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE
                     AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDKSRMKSDTQWVIDS
                     MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA
                     ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            17162..18172
                     /gene="mglC"
                     /locus_tag="OQQ72_002361"
     CDS             17162..18172
                     /gene="mglC"
                     /locus_tag="OQQ72_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HCS2012062.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPCWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(18415..19313)
                     /gene="preA"
                     /locus_tag="OQQ72_002362"
                     /pseudo
     CDS             complement(18415..19313)
                     /gene="preA"
                     /locus_tag="OQQ72_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
BASE COUNT         4601 a         4773 c         5120 g         4819 t
ORIGIN      
        1 attatgcgta aacaaatcgt tgccgataat attcacggtg aaaccggact ggatggtccg
       61 gtattcgagt cgctgacccg ccaggcagaa agtacccacg cggtgaaata catcattgat
      121 accctgatgg caagcgatgg cgatatcact ctggtgccgg ttggtccgct ttcaaatatc
      181 gcggtggcaa tgcgtatgca acccgcgatc ctgcccaaaa tccgtgaaat tgtgctaatg
      241 ggcggcgctt acggtacagg caacttcacg ccatctgccg agttcaacat ctttgctgat
      301 ccggaagcag cccgcgtggt gttcacctcc ggcgttccat tagtgatgat gggcctcgat
      361 ctcaccaacc agactgtttg caccccggac gtgattgcac ggatggaaag ggcaggcggc
      421 cctgccggag agctgttcag cgacatcatg aacttcactc tcaaaacgca gttcgaaaac
      481 tacggcctgg ctggcggccc ggtgcacgac gccacctgca tcggttatct gattaaccct
      541 gatggcatta aaacccagga gatgtacgtc gaagtggacg tcaacagtgg cccttgctat
      601 gggcgtaccg tctgcgacga gctgggcgtt cttggcaagc ccgctaatac caaagtcggc
      661 atcactattg ataccgactg gttctggggc ttagtcgaag agtgcgtgcg cggctacatc
      721 aaaacccatt aagtgttgat aacaagccgg gtcagtatcg caagatccaa gcccggctat
      781 ttctgatggg cagaaagccg tcgcccaata tgacatgaag agataataac tatggatgtc
      841 atgagaagtg ttctgggaat ggtggtattg ctgacgattg cgtttttgct gtcagtaaac
      901 aagaagaaga tcagcctgcg taccgttggc gcggcgttag tgttacaggt cgtgattggc
      961 gggattatgc tttggttacc ggcagggcgt tgggtcgctg aaaaagtcgc ttttggcgtg
     1021 cataaagtga tggcgtacag cgacgcgggt agcgcattta tcttcggttc gctggtcggg
     1081 ccgaaaatgg acacgctgtt tgatggcgca ggatttatct ttggtttcag ggtattaccg
     1141 gcaattatct tcgtcactgc actggtgagt attctctact acatcggtgt gatggggatt
     1201 ttaattcgca ttctcggcgg tatattccag aaagcattaa atatcagcaa gattgagtca
     1261 ttcgtcgcgg tcaccaccat tttcctcggg caaaacgaaa ttccggcgat cgtcaaaccc
     1321 tttatcgatc atctgaatcg caatgaatta tttacagcga tttgtagtgg catggcctcg
     1381 attgctggtt cgacaatgat tggttacgcc gccctgggcg tacctgtgga atatttgctg
     1441 gcggcatcgt taatggcgat cccaggcggg atcttgtttg ctcgcctgtt aagcccggct
     1501 acggaatctt cgcaggtttc ctttaataac ctctctttca ccgaaacacc gccaaaaagc
     1561 attattgaag ccgctgcgac aggggcaatg accgggctga aaatcgccgc cggtgtagcg
     1621 acagttgtta tggcatttgt cgccatcatt gcgttaatta atggtattat cggcggcgtt
     1681 ggcggctggt ttggttttgc acatgcctcg ctggagtcca ttttaggtta cctgttggcc
     1741 ccattggcgt gggtgatggg ggttgactgg agtgatgcaa atcttgccgg gagtttgatt
     1801 gggcagaagc tggcgatcaa tgaatttgtc gcttatctca atttctcgcc atatctgcaa
     1861 acgggtggca ctctggatgc taaaaccgtg gcgattattt ctttcgcgtt gtgcggtttc
     1921 gctaactttg gttctatcgg ggtggtggtg ggggcgtttt ctgcggttgc gccacaccgt
     1981 gtgccggaaa tcgcccaact tggtttacgc gcgctggcgg cggcgacact ttctaacctg
     2041 atgagtgcta ctattgcagg attctttatt ggtttagcgt agtgcgcaat ttatgagccg
     2101 gataagatgc ggtcaagcgt cgaatccggc aacattgtta caccattggc actaatgaaa
     2161 gcgcgttatc ggcagacagg gtagggttgt ttaagctgcc gctggcgcgc gaaattgccg
     2221 cgcaggctac cgcaaaacgg gcgctgtcgc ggaaactgta tccttcaaga aagctatata
     2281 ccaggcccgc cataaaacca tcgccagcac caaaactgtc tactgtcgta tgcgctggcg
     2341 cggtcagcaa aaattgttct ccatcctttt cgctgcaata aactgactca tcgggcaaat
     2401 aaacaaacag ttgctgaaca ccttgctgat gcaatgcatt cactgcggca ttacggtcag
     2461 catcgctggt gatcgcctgt ccccataaaa tttccagctc cggtaaagtg ggtttcaggg
     2521 tgtgaatatg cgccagccag tgtttgattt tgcccgcttt gaattctgaa acggtatcga
     2581 caaacaccgg gatttcatca gcgagggtaa agacccattc cagcgcctcg gctgtcaggt
     2641 tgcaatcagc cagtaccacg cccgcatgac gaagtaaatc gcgcgacccg ttcagtagtt
     2701 gcggtgtcaa ctgttccagc agatgggtat cgttaatcgc cagcacggtt tgatcgtctc
     2761 gattggcaat tgccagatac gtcgatgtgc tttgaccatg caaacgaacg cagccggaga
     2821 cattcacgcc ggcacggcgc gtttcttcca ggagcatttc gccataaaag tcatcgccaa
     2881 tcactgaaag caaatggacg tcacggccta acagcgccag attgtgggcg atgttgcgtc
     2941 ccacgccgcc cgccgagcaa tgaattgtac cgggatgaga agccgcttgc gggtaacgga
     3001 tatccgcgat cccgcgaata tccatattga ttgtccccac cactacgcag tattcctgct
     3061 cggtgagaat gtaacctttg cctttaatcc gccctttgcg cattaaatcc ataatatgcg
     3121 ccgcaacgcg cgaacgactg atttgcagca tgtccgcaat ttcgttctgc tgaatcagcg
     3181 ggttacgccg taaaattgca aggatctcct tttcccggtt attcatcttc aggctaccgc
     3241 tttttcagtt tgttgcgctt tcagccaggc gatctcttct gcccagatat ccgggttgat
     3301 ggtttcaagg atcagcggaa tgccgtcgaa acggtcgtcc tgcatgatcc agcggaacgc
     3361 atcatgaccg atattgcctt caccgaggct atgatggcgg tcaacgcggc tgccaaaggt
     3421 gcttttcgca tcgttaaggt gcatcccgcg cagatactta aagccaacaa tacgggcaaa
     3481 atccgcgaac gttttctcgc attcggctgg agtacgcaaa tcatacccgg cagcgaaagc
     3541 atggcaggta tcaatgcaga cgccgacacg ggatttatct tccacgccgt cgataatcgc
     3601 cgcgagatgt tcgaatttaa accctaagtt actgccctga ccggcggtgt tttcaatcac
     3661 cgctgttaca ccttgagttt tatccagcgc aatgttgatg gattcggcaa tacgcgcaag
     3721 gcaatcctct tctgaaatct gcatcagatg gctgccaggg tggaagttga gcaaagaaag
     3781 ccccagttgt tcgcaacgct gcatttcatc tataaaggca tcgcgcgatt tttccagagc
     3841 ttcagtgacc ggatgtccga ggttaatcag atagctgtcg tggggaagaa tttgcgccga
     3901 tgtgtagtga tatttttcac aggctgcttt gaattcatcg atggtttgcg tcgtgagcgg
     3961 tgcggcacgc cactgacgtt ggtttttggt gaacaaggca aacgcggttg cgtcgatttc
     4021 ggcggcgcga attgcggcat ttgccagacc gccagcagca ctaacgtgcg ctccaatgta
     4081 tttcatgcga ggactcctgt taaacccgct ggaggaaaac ggtaatgata gcgggttaac
     4141 aggagcaaga tgtagtggtt tatgcgatga cgctttgaat cacatagtta atcgcaccac
     4201 caccaacaat cagccaggca aacagtacca gtgccatcag cagaggtttc gccccggctt
     4261 ttttcagcgc gctgacgtga gtggtcagac ccagcgccgc catcgccatt gccagcagga
     4321 aggtatccag cgttaccagc atgttcacca cgctctgcgg taacaggtgg aacgagttaa
     4381 agatggcaac gacgatgaac aagatggcaa accacggaat agtgattttg cttttctcgc
     4441 cgctgttcgc cccagacagc tgtttaacac gcgccgccag caggatgagg aacggagcca
     4501 gcatcatcac gcgcagcatt ttggaaataa ctgctgcgtt ttccgcatcc gggctgatgg
     4561 catgacctgc cgccaccacc tgcgccactt cgtgcacagt agaaccaatg tagataccga
     4621 aagtttccgg actaaaccat tgagacatca gcggatatat cgccgggtag aggaaaatcg
     4681 cgacggtccc gaagataaca acggttgcaa cagccacggt tactttactg gcttccgctt
     4741 tcactaccgg ctcagtcgcc agtaccgcgg cagcaccaca gatactgcta ccggcaccga
     4801 tcaaccagct ggtgtgctta tccagaccaa acactttctg ccccaggaag caagccagca
     4861 ggaaggtact ggacagcgtc aacacgtcaa tgatgatccc actgataccg acatcggcaa
     4921 tttgcgagaa cgtcagacgg aagccataaa gaatgatacc cagacgtaat aaatattgct
     4981 tggcaaacag cacaccaccg tcacagcttt tccagatgtg cggatagatg gtgttgccta
     5041 aaaccatccc caacaagatt gcgagggtga gggcactaaa cccggcaccc gcaaccgcgg
     5101 gaatggaacc accccacagg gcgaccccgg tgataactgc actcagggct aaccccggaa
     5161 taaaatgcca cagtgtacga tgttgtttct gtaaggtgat attcgtcata accctctcct
     5221 tataaccggg cataaggtta cgactaactg gtttaaaaat aaaattgatt atatatttat
     5281 aattaatctt tataagtggt aagcgactat gcacatcacc ctccggcagt tggaagtttt
     5341 tgcagaagta ttgaaaagtg gatcaaccac ccaggcgtcg gtgatgctgg cgttgtcgca
     5401 atcagcagtg agcgcagcct tgaccgacct ggaagggcag cttggcgtgc aactgtttga
     5461 tcgcgtgggg aaaagactgg ttgttaatga acacgggcgg ctgctctatc cgcgtgcgtt
     5521 ggcattgctt gaacaggcgg ttgaaatcga acaactgttt cgcgaagaca acggcgcgat
     5581 tcgtatctat gccagtagta ccatcggtaa ctacattctg cctgcagtta tcgcccgtta
     5641 tcgccatgat tatccgcagt tgccgattga acttagcgtt gggaacagcc aggacgtgat
     5701 gcaagcggtg ctggatttcc gcgttgatat tggctttatt gaaggaccgt gccacagcac
     5761 tgaaatcatt tctgaaccgt ggctggaaga cgagctggtg gttttcgccg cgccgacttc
     5821 gccgttggct cgtggtccgg tcaccttaga acagctggcc gctgcgccgt ggatcctgcg
     5881 tgaacgcggt tccggcacgc gggagattgt cgattatcta ttgctgtcac atttaccgaa
     5941 gtttgagatg gcgatggaat taggtaactc cgaggcaatc aaacatgcgg tgcgtcatgg
     6001 gttgggaatt agttgcctgt cgcgacgggt gattgaagat caattgcagg caggcacatt
     6061 aagtgaagtt gcggtccctc tgccgcgcct gatgcgtacg ttgtggcgta tacatcatcg
     6121 gcaaaaacac ctttccaacg cgctacggcg ctttctggac tattgcgatc ccgcgaatat
     6181 accgcgttaa gttgctgtac aagaacatgc tggtgctgtg tcgatttcgt gacgcagcgc
     6241 cctcagcatg cattcgccag aaaagagatt ggctgcttta cttataatcc cagggcgatc
     6301 atgaaggtgt cttataaccg tgtatttctg ccggaaggat tgccaatcgt ctgctacaat
     6361 cgcgcctcat ttttaagatg gatagcattt ttgtatggtt tccgaaacta aaaccacaga
     6421 agcgccgggc ttacgccgtg aattaaaggc gcgtcacctg acgatgattg ccattggcgg
     6481 ttccatcggt acaggtcttt ttgttgcctc tggcgcaacg atttctcagg caggtccggg
     6541 cggggcattg ctctcgtata tgctgattgg cctgatggtt tacttcctga tgaccagtct
     6601 cggtgaactg gctgcatata tgccggtttc cggttcgttt gccacttacg gtcagaacta
     6661 tgttgaagaa ggctttggct tcgcgctggg ctggaactac tggtacaact gggcggtgac
     6721 tatcgccgtt gacctggttg cagctcagct ggtcatgagc tggtggttcc cggatacacc
     6781 gggctggatc tggagtgcgt tgttcctcgg cgttatcttc ctgctgaact acatctcagt
     6841 tcgtggcttt ggtgaagcgg aatactggtt ctcactgatc aaagtcacga cagttattgt
     6901 ctttatcatc gttggcgtgc tgatgattat cggtatcttc aaaggcgcgc agcctgcggg
     6961 ctggagcaac tggacaatcg gcgaagcgcc gtttgctggt ggttttgcgg cgatgatcgg
     7021 cgtagctatg attgtcggct tctctttcca gggaaccgag ctgatcggta ttgctgcagg
     7081 cgagtccgaa gatccggcga aaaacattcc acgcgcggta cgtcaggtgt tctggcgaat
     7141 cctgttgttc tatgtgttcg cgatcctgat tatcagcctg attattccgt acaccgatcc
     7201 gagcctgctg cgtaacgatg ttaaagacat cagcgttagt ccgttcaccc tggtgttcca
     7261 gcacgcgggt ctgctctctg cggcggcggt gatgaacgca gttattctga cggcggtgct
     7321 gtcagccggt aactccggta tgtatgcgtc tactcgtatg ctgtacaccc tggcgtgtga
     7381 cggtaaagcg ccgcgcattt tcgctaaact gtcgcgtggt ggtgtgccgc gtaatgcgct
     7441 gtatgcgacg acggtgattg ccggtctgtg cttcctgacc tccatgtttg gcaaccagac
     7501 ggtatacctg tggctgctga acacctccgg gatgacgggt tttatcgcct ggctggggat
     7561 tgccattagc cactatcgct tccgtcgcgg ttacgtattg cagggacacg acattaacga
     7621 tctgccgtac cgttcaggtt tcttcccact ggggccgatc ttcgcattca ttctgtgtct
     7681 gattatcact ttgggccaga actacgaagc gttcctgaaa gataccattg actggggcgg
     7741 cgtagcggca acgtatattg gtatcccgct gttcctgatt atttggttcg gctacaagct
     7801 gattaaagga actcacttcg tacgctacag cgaaatgaag ttcccgcaga acgataagaa
     7861 ataagtttcc tcccttcctt gctaagccct ctcaaccgag agggcttttt caattccatt
     7921 tccctgacaa atcatgcgga tataaaattt aacatttgga ttgataattg ttatcgtttg
     7981 cattatcgtt acgccgcaat caaaaaaggc tgacaaatca gaggctgttc cggctttctg
     8041 ggatgatcac ctgcatacaa ataagtccac cgcgatgctg ccgtacgcaa ggggacgtga
     8101 agaaggtgtg agcgataacc cattttattt tcgtagttac ctcatggaga tatggaatgt
     8161 ttaggttgaa ccctttcgta cgggtcaggc tgtgtttgtc cgctatttct tgtgcatggc
     8221 ctgtgttagc ggtcgatgat gatggcgaaa cgatggttgt cactgcatct tccgttgaac
     8281 aaaacctcaa agatgcaccc gccagtatca gcgtcattac ccaggaagac ctgcagcgaa
     8341 aaccggtaca gaatctgaag gatgtcctca aagaagtgcc tggcgtacaa ctgacgaacg
     8401 aaggggataa ccgtaagggc gttagtattc gtggtctgga cagcagctac accctgattc
     8461 tcgtcgacgg taaacgcgtt aactcccgca atgccgtctt ccgccacaat gatttcgatc
     8521 tgaactggat cccggtcgat tccatcgaac gtattgaagt ggttcgtggc ccgatgtcgt
     8581 cgctatacgg ctccgatgcg ctcggcggtg tagtgaatat catcaccaaa aaaatcggtc
     8641 agaaatggtc gggtaccgtt accgtcgata ccaccattca ggaacatcgc gatcgcggtg
     8701 atacctataa cggtcagttc tttaccagtg gaccattaat tgatggtgtg ctgggaatga
     8761 aagcttacgg cagcctggca aaacgtgaaa aggatgaccc gcaaaactca acgaccaccg
     8821 ataccggaga aatgccgcgt attgaaggat tctccagccg cgacggcaat gtcgaatttg
     8881 cctggacacc gaatcaaaat cacgatttta ctgccggata cggtttcgac cgtcaggaac
     8941 tcgctggaca aaaaccgcct ggaacgccag aactactccg tcagccataa tgggcgttgg
     9001 gattacggca ccagcgaact gaaatactac ggtgagaaag tcgagaacaa aaaccctggc
     9061 aacagcagcc cgataacttc cgaaagcaat acggtcgacg gcaaatacac gttgccgctg
     9121 acggcgatta atcagtttct cacggttggc ggtgaatggc gtcacgacaa acttagcgat
     9181 gcggtgaacc tgaccggggg aaccagctcc aaaacgtctg ccagccagta cgcgctgttt
     9241 gtggaagatg aatggcggat cttcgagccg ctggcgctga cgaccggcgt gcgtatggac
     9301 gatcacgaaa cctacggtga acactggagt ccgcgtgcct acctggttta taacgccacc
     9361 gacaccgtaa cggtgaaagg gggctgggcg acggcattta aagcaccttc tctgttgcaa
     9421 cttagccctg actggacgag caattcctgc cgtggcgcat gtaagattgt gggtagcccg
     9481 gatctgaaac cagaaaccag cgaaagttgg gagctggggc tttactacat gggtgaagaa
     9541 ggctggctgg aagggggtga atccagcgtt accgttttcc gtaacgatgt gaaagatcgt
     9601 atcagcatca gccgtacgtc tgacgtcaac gctgcaccgg gctaccaaaa ctttgttggt
     9661 tttgagacgg gcgctaacgg acggcgcata ccggtattta gctactacaa cgttaacaaa
     9721 gctcgtattc agggcgtgga aaccgaactg aaaattccgt tcaacgatga atggaaactg
     9781 tcgatcaact acacctacaa cgatggtcgt gatgtcagca acggcgaaaa caaaccgcta
     9841 tccgatctgc cgttccatac tgctaacggt acgctggact ggaaaccgct ggcgctggaa
     9901 gactggtcat tctatgtttc tggtcactat accgggcaga aacgcgccga cagcgcgacg
     9961 gctaaaacac cgggcggtta taccatctgg aataccggcg cggcctggca ggtgactaaa
    10021 gacgtcaaac tgcgcgcagg cgtgctgaac cttggcgaca aggatctcag tcgtgacgac
    10081 tacagctata acgaagacgg acgtcgttac tttatggcag tggattatcg cttctgatga
    10141 gaagatgccc ggcgaaccgg gcggactttc acttcagtaa atactgcgca tggaagcgca
    10201 ggtgatcctc tataaaagag gcgatgaagt agtaactgtg atcatatccc ggctgaatac
    10261 gcagcgtcat cggccacgct ttctggcgcg cggcttctgc cagtaccgca ggttgcaact
    10321 ggtcggcaag aaactgatca ttatcgccct gatcgataag cgtcgggatc gcatcctgcg
    10381 cgttactggc atacatcagc gcgcaactgt cccattccag ccatgcattt ttgtcctcac
    10441 ctaaatagct gctaaacgct ttgattcccc acgggacgct gcacggattc acaattggcg
    10501 caaaggccga aacgctggtg tatttacccg gatttttcag cgccataatc agcgcaccgt
    10561 gaccacccat tgagtgaccg ctaatggcgc agcggtcgct gacattaaat tgcgactgaa
    10621 ccagcgccgg taattcatcg cgcagataat catacatccg gtaatgcgtc gcccacggcg
    10681 gttgcgtggc attaagataa aagcctgcgc cctggcctaa atcgtagcca tcgtcgttgg
    10741 caaccttttc gccgcgcggg ctggtgtctg gcatcaccag tacaatcccc agttctgccg
    10801 ccacgcgctg ggcacccgcc ttggtggtga agttctcgtc attgcaggtt aatccggaaa
    10861 gccagtacag cactggtggc ggggtgtgat cacgaggggg tgggagaaag atactgaacg
    10921 tcatcgggca gtttaaggta ctggagtcgt gtcgccagcg ttgctgccag ccttcaaaac
    10981 agcggtgctc ttcgagcatt tccatgcgtg gctccttgtt gtgttgtttg caatttcttc
    11041 atcataccgt ttattcaatg tgctgtgagt aactttcact tccgtatttg cataacgatg
    11101 ttttaacatc tgctgatgaa aggcagcggc aattacaata attatcgctg tgaatactgg
    11161 attatgtgcg ccgcctcacg cacaataatc aggctgtaaa tcagcttaat aactttgccc
    11221 ccacgcaggg cggaggcgtc acacctgcag gagaaatcat aaatgccatc actcagtaaa
    11281 gaagcggccc tggttcatga agcgttagtt gcgcgaggac tggaaacacc gctgcgcccg
    11341 cccgtgcatg aaatggataa cgaaacgcgc aaaagcctta ttgctggtca tatgaccgaa
    11401 atcatgcagc tgctgaatct cgacctggct gatgacagtt tgatggaaac gccgcatcgc
    11461 atcgctaaaa tgtatgtcga tgaaattttc tccggtctgg attacgccaa cttcccgaaa
    11521 atcaccctca ttgaaaacaa aatgaaggtc gatgaaatgg tcaccgtgcg cgatatcact
    11581 ctgaccagta cctgtgaaca ccattttgtt accatcgatg gcaaagcgac ggtggcttat
    11641 atcccgaaag attcggtgat cggtctgtca aaaattaacc gtatcgtgca gttctttgcc
    11701 cagcgtccgc aggtgcagga acgtctgacg cagcaaattc ttattgcgct acaaacgctg
    11761 ctgggcacca ataacgtggc tgtctccatt gatgcggtgc attactgcgt gaaagcgcgt
    11821 ggcatccgcg atgcaaccag tgccacaaca acgacctctc ttggtggatt gttcaaatcc
    11881 agtcagaata cgcgccacga gtttctgcgc gctgtgcgtc atcacaactg attaaaaggc
    11941 aggaaccatg gagcgcaacg taacgctcga ttttgttcgc ggcgtcgcca ttctggggat
    12001 cctgctatta aacatcagcg cctttgggct accaaaggcg gcttatctca atcccgcctg
    12061 gtacggcgct attacgccgc aggatgcatg gacctgggca tttctcgatc tcatcggcca
    12121 ggtgaaattc ctcacgcttt ttgcgctgct gtttggtgcg ggcctgcaaa tgttgctgcc
    12181 ccgtggcaga cgctggatcc agtcgcggtt aacgctgtta gtcttgctgg gttttattca
    12241 cggtttattg ttctgggacg gcgatattct gctggcttac gggctggtgg gcttaatctg
    12301 ctggcggctg gtgcgcgatg cgccatcggt aaaaagcctg tttaatacag gcgtcatgct
    12361 ttatctggtg gggcttggcg ttttgctgtt attggggctg atttccgaca gccagaccag
    12421 ccgcgcctgg acgccggatg catcggctat tttgtatgaa aaatactgga agcttcacgg
    12481 cggcgttgaa gcgatcagta atcgtgccga tggtgttggc aacagtttac tggcactggg
    12541 cgcacagtat ggctggcaac tggcagggat gatgctcatt ggtgcggcgc tgatgcgcag
    12601 cggctggctg aaagggcagt tcagcttacg tcactatcgt cgtactggtt ttgtgctggt
    12661 ggcgattggg gtgaccatta accttcctgc catcgccctg caatggcagc tggactgggc
    12721 gtatcgctgg tgtgccttct tacttcaaat gccgcgggaa ctgagtgcgc cgtttcaggc
    12781 gattggctat gcgtcgctgt tttatggctt ctggccgcaa ttgagccgct ttaagctggt
    12841 gcttgcgatc gcctgcgtcg gacggatggc gctgaccaac tatctattgc aaacgctgat
    12901 ttgtaccatg cttttttacc acctcggttt gtttatgcat tttgaccgcc tggagctgct
    12961 ggcgtttgtt attccggtat ggctggcgaa tatcctcttc tctgttatct ggctgcgtta
    13021 cttccgccag gggccggtgg aatggctctg gcgtcagtta actttgcgtg ctgccggaac
    13081 ggcaatatct aaaacatcaa gataacgatc tggatcacat tcgttaacaa aacggctgta
    13141 accgtttcca ttgctgtgac tcgattcacg aagtcctgta ttcagtgctg acaaaatagc
    13201 cgccagcaag cagtcattta ctgcaatctc ataacaggta gtgaatatga tcaccattcg
    13261 tgatgtagcg cgtcaggctg gcgtctctgt ggcaacggtt tcccgggtgc tcaataacag
    13321 cacgctggtc agtgccgaca cgcgtgaagc agtaatgaaa gccgtgagtg agctggatta
    13381 tcggccaaac gccaatgccc aggcgctggc aactcaggtt agcgacacca ttggcgtggt
    13441 ggtgatggac gtttctgatg cgtttttcgg cgcgctggta aaagcggtgg atctagtcgc
    13501 tcagcagcat cagaaatacg tgctaatcgg caatagctat catgaagcgg aaaaagagcg
    13561 tcacgccatt gaggtgttaa ttcgccagcg ttgtaatgcg ttgattgttc actcaaaagc
    13621 attgagtgac gatgaactgg cgcaatttat ggataacatt cccggtatgg tgttaatcaa
    13681 ccgcgttgtg ccggggtacg cccatcgttg cgtttgcctg gataatctca gcggtgcccg
    13741 aatggcgacg cgcatgttgc tgaataacgg tcatcaacgt attggttatc tttcttccag
    13801 tcacggcatt gaagatgacg ccatgcgtaa agcaggctgg atgagtgcgt tgaaagagca
    13861 ggatattatt ccgccggaaa gctggattgg cactggtacg ccggacatgc cgggcggtga
    13921 ggcggcgatg gttgaactgc tggggcgcaa tctacaactt accgctatat ttgcttataa
    13981 cgacaatatg gccgctggcg cactgacagc attaaaagat aatggcattg cgattccgtt
    14041 acatctctca atcatcggtt tcgatgatat tcccatcgcc cgttacaccg acccgcaatt
    14101 aacgaccgtg cgttatccca ttgcttcaat ggctaaatta gccaccgaac tggccttgca
    14161 gggggcagca ggcaatattg atcctcgtgc cagccactgt tttatgccga cgttagtgcg
    14221 tcgccattct gtcgcaacgc gccagaatgc ggcggcgatc actaactcaa caaatcaggc
    14281 gatgtaaccg ctttcaatct gtgagtgatt tcacagtatc ttaacaatgt gatagctatg
    14341 attgcaccgt tttaacgttg taacccgtat gtaacagtga ataatcactt tcaccgaggt
    14401 aatagcgtca taacaacaat taaagccgtt ttctggagcg ttaccgggca tggaagaacg
    14461 aattttaaaa agtgagcttc ggcgttcagt aacacttcat taactctact gccctgccga
    14521 gcatttatct caagcactac cctgcataag aaaaaccgga gataccatga ataagaaggt
    14581 gttaaccctg tctgctgtga tggccagcat gttattcggt gccgctgcac acgctgctga
    14641 tactcgcatt ggtgtaacaa tctataagta cgacgataac tttatgtctg tagtgcgcaa
    14701 ggctattgag taagatgcga aagccgcgcc agatgttcag ctgctgatga atgattctca
    14761 gaatgaccag tccaagcaga acgatcagat cgacgtattg ctggcgaaag gggtgaaggc
    14821 actggcaatc aacctggttg acccggcagc tgcgggtacg gtgattgaga aagcgcgtgg
    14881 gcaaaacgtg ccggtggttt tcttcaacaa agaaccgtct cgtaaggcgc tggatagcta
    14941 cgacaaagcc tactacgttg gcactgactc caaagagtcc ggcattattc agggcgattt
    15001 gattgctaaa cactgggcgg cgaatcaggg ttgggatctg aacaaagacg gtcagattca
    15061 gtccgtactg ctgaaaggtg aaccgggcca tccggatgca gaagcacgta ccacttacgt
    15121 gattaaagaa ttgaacgata aaggcatcaa aactgaacag ttacagttag ataccgcaat
    15181 gtgggacacc gctcaggcga aagataagat ggacgcctgg ctgtctggcc cgaacgccaa
    15241 caaaatcgaa gtggttatcg ccaacaacga tgcgatggca atgggcgcgg tagaagcact
    15301 gaaagcacac aacaagtcca gcattccggt gtttggcgtc gatgcgctgc cagaagcgct
    15361 ggcgctggtg aaatccggtg cactggcggg cacagtactg aacgatgcta acaaccaggc
    15421 gaaagcgacc tttgatctgg cgaaaaacct ggccgatggc aaaggtgcgg ctgatggcac
    15481 caactggaaa atcgacaaca aagtggtccg cgtaccttat gttggcgtag ataaagacaa
    15541 cctggctgaa ttcagcaaga aataagactg attgggcgca gtcgtttact gcgcccttat
    15601 tgtatggcca acaaggtaaa attatatggt cagctcaacg actccgtctt ccggggaata
    15661 cttgttggaa atgagcggta tcaacaagtc ctttcctggt gttaaggcac ttgataacgt
    15721 taatttaaaa gtccggccac attctatcca tgcattaatg ggggaaaacg gtgcaggaaa
    15781 atcgacatta ttaaaatgcc tgtttggtat ttatcaaaaa gactccggca ccattttatt
    15841 ccagggtaaa gagatcgatt tccattccgc caaagaggca ctggaaaatg gtatttcgat
    15901 ggtacaccag gagttaaacc tggtattaca acgttcggtg atggataaca tgtggctgag
    15961 gcgatatccc accaaaggca tgtttgtcga tcaggacaaa atgtaccgcg aaaccaaagc
    16021 gatttttgat gaactggata ttgatatcga tccgcgtgcg cgcgtcggca cattatccgt
    16081 ttcgcaaatg cagatgatcg aaatcgccaa agcgttttcc tataacgcga aaattgtgat
    16141 tatggatgaa ccgacttctt cgttaaccga aaaagaggtc aatcatctgt tcactattat
    16201 tcgtaaatta aaagagcgcg gctgcggtat tgtttatatc tcgcataaaa tggaagaaat
    16261 cttccagtta tgtgatgaag ttaccgtatt gcgcgacggt cagtggatcg ccaccgaacc
    16321 gctggcagga ctgacgatgg acaagatcat cgccatgatg gttgggcgtt ctcttaatca
    16381 gcgttttcct gacaaagaaa acaagccggg cgaagtcatc ctcgaggtgc gtaacctaac
    16441 gtcactgcgc cagccgtcga ttcgcgatgt ctcgtttgat ctgcataaag gggagatcct
    16501 cggtattgcc gggctggtgg gggcgaaacg taccgatatt gttgagacgt tatttggtat
    16561 tcgcgagaaa tcggctggca ccattacgtt gcacggcaaa cagatcaata accataatgc
    16621 caacgaagcc ataaaccacg gatttgcact ggtaactgag gagcgccgct caacgggaat
    16681 ttatgcctat ctggatattg gttttaactc gttaatttcc aatattcgca actacaaaaa
    16741 taaagttggt ttactggata aatcgcggat gaaaagcgat acccagtggg tgattgattc
    16801 gatgcgggta aaaacaccgg ggcatcggac gcaaattggt tcgctctcag gtggtaatca
    16861 gcaaaaggtg attattgggc gctggctact aacgcaacca gaaatattaa tgctcgatga
    16921 accgacgcgc ggtattgatg tcggggcgaa gtttgagatc tatcagttaa ttgccgaact
    16981 ggcgaagaaa ggcaaaggga ttattattat ctcctctgaa atgcctgagt tgttagggat
    17041 aacagaccgt attctggtca tgagcaatgg tctcgtttcc ggaattgtcg acacaaaaac
    17101 aacaacgcaa aacgaaattc tgcgtcttgc gtctttgcac ctttaagatt aggggcttcc
    17161 catgagtgcg ttaaataaga aaagttttct tacttacctg aaagagggcg gtatttacgt
    17221 cgttctttta gttttgctgg cgattattat tttccaggac ccaacatttt taagtctgtt
    17281 gaacttaagt aatattctca cccagtcatc ggtgcgtatt attatcgcgc tcggtgtggc
    17341 agggttaatt gtcacccagg ggaccgacct ttctgcgggg cgtcaagtag ggctggcagc
    17401 agtggtggca gcgacattat tgcagtccat ggataacgcc aataaagtgt tcccggaaat
    17461 ggcgacgatg ccgattgcgc tggttattct gattgtctgt gccattggtg cggtgatcgg
    17521 tttgatcaac ggtctgatta tcgcttatct caacgttacg ccgttcatta ccacgctcgg
    17581 cacgatgatc atcgtctatg gcatcaactc gctctattac gactttgtcg gggcgtcgcc
    17641 aatttctggt tttgacagtg gcttctctac ctttgctcag ggctttgtcg cgctggggag
    17701 tttccgtctc tcttacatca ccttctacgc gttgattgcg gtggcgttcg tctgggtgtt
    17761 gtggaacaaa acccgcttcg gtaagaacat ttttgccatt ggcggtaacc cggaagcggc
    17821 aaaagtatct ggtgtcaacg tcggcctgaa cctgctgatg atctacgcgt tgtctggcgt
    17881 gttctatgcc tttggcggga tgttagaagc cggacgtatc ggctctgcca ccaacaacct
    17941 cggctttatg tatgagctgg atgctatcgc ggcgtgcgtg gtaggcggtg tatcgttcag
    18001 cggcggtgtg gggacggtga ttggcgtggt gaccggggta attattttta ccgtcatcaa
    18061 ctatggcctg acgtatatcg gcgtaaaccc atgctggcag tacatcatca aaggggcgat
    18121 tattatcttc gccgtagcgc tggattcact gaaatacgcg cgtaagaaat gatgtgaatg
    18181 tggtccgcat tcggtcataa acgcacataa catcatgatc tgtgtggttt tgtaggccgg
    18241 ataaggcgtt cacgccgcat ccggcaacag gagccaaatg ccggatgcaa cgctggcgcg
    18301 ttttatccgg cctacaataa gctcaacata ctgatttgta tggttttgta ggccggataa
    18361 ggcgttcaag ccgcatccgg cgacaggaac caaatgccgg atgtgacgcg ggttctacaa
    18421 cgttaccggg tgttctttct cgcctttctt aaacttcact tccccgagct caatacaacc
    18481 caccgggcag acgtgaccac aaagcagaca acccacacat ttctcggtat tacaatgcgg
    18541 tgtgcgggtt ttctcgctcc attccatcgc ctggtgaccg ccgtcgtaac aggaaatata
    18601 acagcgtcca cagccaacac atttgtcaag attgatacgg ggatagacaa tataactgcg
    18661 gtctaaatct tccgccggga caatattgtt attcgccaga cctaccatct cctgcaacga
    18721 atcaaatccc tgatcggcga gataatgcga taacccgctc gccatatctt ctacgatgcg
    18781 attgccgtac tgcataatgc cggtggtgac ctgtaacgtt gctgcgccga gcaataaaaa
    18841 ctccgccgca tcctcccagg tttcaatgcc gccgataccg ctgattggga aatcgcgcag
    18901 ttctggatgg gtgcgcattt gctgaatgaa gcgcagggcg atcggtttta ccgctttacc
    18961 ggaatatccg gaaatactcg atttaccgtt aacgatcggc ataccgattt tctgattaag
    19021 atcgatattg gtgatggatt taacggtgtt aattgccgca atgccatctg cgccgccgcg
    19081 cttcgccgcc agcgccactt cgcacatatc accgatattc ggcgtcatct tcgccagcat
    19141 tggcagcgtg gaaccgcgtt tcaccgcccg acaatatttt tctaccagca ccggactttg
    19201 cccgacatcg ctacccatcg catgagaagt catttgcgga caggagaagt tacactcgat
    19261 catatccgcg ccagctcctc ccattgctgc tcattttccc ccatgatcga agc
//
LOCUS       DAJVUY010000077        19134 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.077, whole genome shotgun sequence.
ACCESSION   DAJVUY010000077 DAJVUY010000000
VERSION     DAJVUY010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19134
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.077"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(31..2478)
                     /gene="glgP"
                     /locus_tag="OQQ72_002363"
     CDS             complement(31..2478)
                     /gene="glgP"
                     /locus_tag="OQQ72_002363"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HCS2012063.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="OQQ72_002364"
     CDS             complement(2497..3930)
                     /gene="glgA"
                     /locus_tag="OQQ72_002364"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HCS2012064.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRASLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="OQQ72_002365"
     CDS             complement(3930..5225)
                     /gene="glgC"
                     /locus_tag="OQQ72_002365"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HCS2012065.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="OQQ72_002366"
     CDS             complement(5243..7216)
                     /gene="glgX"
                     /locus_tag="OQQ72_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HCS2012066.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWDSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="OQQ72_002367"
     CDS             complement(7213..9399)
                     /gene="glgB"
                     /locus_tag="OQQ72_002367"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HCS2012067.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9672..10775)
                     /gene="asd"
                     /locus_tag="OQQ72_002368"
     CDS             complement(9672..10775)
                     /gene="asd"
                     /locus_tag="OQQ72_002368"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS2012068.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10967..11560
                     /gene="yhgN"
                     /locus_tag="OQQ72_002369"
     CDS             10967..11560
                     /gene="yhgN"
                     /locus_tag="OQQ72_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HCS2012069.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="OQQ72_002370"
     CDS             complement(11617..12957)
                     /gene="gntU"
                     /locus_tag="OQQ72_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS2012070.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGPLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="OQQ72_002371"
     CDS             complement(12961..13488)
                     /gene="gntK"
                     /locus_tag="OQQ72_002371"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HCS2012071.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMLRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="OQQ72_002372"
     CDS             complement(13627..14622)
                     /gene="gntR"
                     /locus_tag="OQQ72_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HCS2012072.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14846..15541)
                     /gene="yhhW"
                     /locus_tag="OQQ72_002373"
     CDS             complement(14846..15541)
                     /gene="yhhW"
                     /locus_tag="OQQ72_002373"
                     /EC_number="1.13.11.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quercetin 2,3-dioxygenase"
                     /protein_id="HCS2012073.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15664..16701)
                     /locus_tag="OQQ72_002374"
     CDS             complement(15664..16701)
                     /locus_tag="OQQ72_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS2012074.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFISDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLSVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV
                     PEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVKESEVLTNLEILERGFE
                     QASPSTVTFAN"
     gene            17033..17521
                     /gene="yhhY"
                     /locus_tag="OQQ72_002375"
     CDS             17033..17521
                     /gene="yhhY"
                     /locus_tag="OQQ72_002375"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS2012075.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17758..18957
                     /locus_tag="OQQ72_002376"
     CDS             17758..18957
                     /locus_tag="OQQ72_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000065895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp1 family type VI secretion system effector"
                     /protein_id="HCS2012076.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAADLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPMKNVMNASH
                     TIKHGAV"
BASE COUNT         4903 a         5064 c         4650 g         4517 t
ORIGIN      
        1 cctttggccc cgttctattt attggtgaac ttacaatctc accggatcga tatgccagat
       61 atgatcggcg tactctttga tagtacggtc agaagagaag tagcccatat tggcaatgtt
      121 cagcatcgct tttgcggtcc actcttcctg aagctcgtag agttcgtcga ctttatcctg
      181 acaatcgaca tagctgcgat aatccgccag aacctgatag tgatcgccga agttgatcag
      241 cgaatcaacc agatcgcgat agcgacccgg atcttccgga ctgaatacac cgctgccgat
      301 ttgcgtcagc acctgatgca gctcctcatc tttctcgtag tattcacgcg gtttgtagcc
      361 ctgacgacgc agttcttcca cttcttccgc tgtgttacca aaaataaaga tattgtcagc
      421 accgacatga tccagcatct cgacattcgc accgtccaac gtaccgatag tcagcgcacc
      481 gttaagcgca aacttcatgt tactggtgcc ggaagcttcc gtccctgcca gcgaaatctg
      541 ttcagacaga tctgccgccg gaatgatcaa ctgcgccagg ctaacgctgt agttcgggat
      601 gaacacgact ttcagcttat cgccaatctg cggatcgttg ttgatcactt tcgctacgtc
      661 attgatcaaa tgaataatgt gcttcgccat gtaataggcc gaagccgcct taccgccaaa
      721 aatattcacg cgcggtaccc acttcgcatc cgggtcggcc ttgatgcggt tatagcgggt
      781 aatcacatgc aacacattca tcaattgacg tttgtattcg tgaatacgtt tgatttgtac
      841 atcgaacaac gcctttggat tcaccaccac attcagctgc tgggcgatat actctgccag
      901 acgctttttg ttctccagct tcgcctgatg cacagcgtga ttaaccattg ggaaatcaca
      961 gtgttgttgc agctcattaa gcaggctaag gtcggtgcgc cagttacggc ccaggtgttc
     1021 gtccagcacg gctgaaagcg atgggttcgc taccgctagc cagcgacgcg gcgtcacacc
     1081 gttggtgacg ttggtgaaac gacccgggaa gattttcgca aagtcggcaa acaacgattg
     1141 caccatcaga ttagagtgca gttccgatac accgttaact ttgtggctca caacaaccgc
     1201 cagccaggcc atacgcacac gacgaccgtt ggattcatca atgatcgacg cccgtcccag
     1261 cagatcggta tcgttcggat actgttcctg caaggttttc aggaaatagt cgttgatttc
     1321 aaagatgatc tgcaggtgac gcggcagaat tttacccagc atatcaaccg gccaggtttc
     1381 cagcgcctcg ctcatcagcg tgtggttagt gtaggagaag acctgacaac acacctcaaa
     1441 cgcgtcgtcc cagctaaatt ggtgctcatc gatcagcaga cgcatcatct caggaatcga
     1501 cagtaccgga tgggtatcat tgagatgaat cgcgatttta tccgccaggt tatcgtaggt
     1561 tttatgcaac tgataatggc ggcttaaaat gtcctgaatg gtcgaggaaa ccagaaagta
     1621 ttcctgacgc aggcgcagct cacgcccgga gtaggtggag tcatccggat acagtacgcg
     1681 agatacgttc tcggagtggt ttttatcttc cactgccgcg aagtagtcac cttggttgaa
     1741 tttaccgagg ttaatttcgc tactggcttg cgcactccac aaacgcaacg tgttggtcgc
     1801 gtcggtgtcg taaccaggga ttatctgatc gtaagcgact cccagaatct cttcggtttc
     1861 aatccagcgc gtttttttac cttcctgctg aatgcgacca ccaaaacgga ctttatagcg
     1921 cgtgttgtgg cgtttgaatt cccacgggtt accgtattcc agccagtagt ctggcgactc
     1981 tttctggcta ccgttaacga tgttctgctt gaacataccg tagtcatagc ggatgccgta
     2041 accgcgcccc ggcaacccta acgtcgccag agaatcaagg aagcaagccg ccagacgtcc
     2101 caggccaccg ttaccgaggc ctgggtcatt ttcttcatca atcagctctt cgagatttaa
     2161 ccccatcgct tccagtgcgc cctgtacatc ttcgtaaatt cctagcgaca acatggcgtt
     2221 ggagagcgta cggccaatca aaaactccat cgacaggtag taaacctgac gagtttcttg
     2281 cgacaactgg gcacggtttg aacgtaacca gcgctccacg agacgatcgc gcacagcaaa
     2341 taacgttgcg ttcagccatt catgtttatt ggcgacgacc gggtcctttc caatcgtaaa
     2401 catcagcttg taagcgatag agtgcttaag agcttctacg ctaagcgtgg gcgatgaata
     2461 tgtaaacgga gcattcatat aggcgtttcc tgaaaactat ttcaagcgat agtaaagctc
     2521 acggtacgac ttcgccgcga cctgccagct aaaatccatt gccatagcct gacgttgcac
     2581 aaaccgccac agtgaagcac gagaccacag tacaaaagca cgtcgaatag cccgtaacag
     2641 cgaccaggca ttactatctt caaagacaaa cccactggcg acgccatctg caaggttctc
     2701 aagagaacag tcagaaaccg tatcagcaag cccaccggtg cgccgcacta acggcagcgt
     2761 accgtacttc aatccataaa gttgcgttaa gccgcacggt tcaaaacggc tgggcaccag
     2821 aatgacgtcc gcgccgccca taatgcgatg cgaaaatgct tcgtgatagc caatctgaac
     2881 gcccacctgg ccggggtatt ccgctgccgc cgcaaggaaa ccttcctgca gcaccggatc
     2941 gcccgcgccg agtagcgcca gctgcccgcc ctgctccaga agacccggta aggcttccag
     3001 caccaggtcg agacctttct ggctggtcag acggctcacc actgcaaaaa gcggcacttt
     3061 atcgtcaacc ttaagcccca ttgcgatttg taactggcgc ttattttccg ctttatcttc
     3121 caacgtatcg cgggtgtaac gcgaggccaa cagtaagtcc gtctctggac tccagatttt
     3181 ctcgtccacg ccgttcagta cgccggaaag acgcccttca cggtgacgct gttgcaacag
     3241 accttccata ccgtaggcaa actgcggttc ggtgatctcg cgagcgtagg ttggactgac
     3301 cgccgtaatg tgatcggcat agtacagacc ggccttcagg aaagagattt gtccgttgaa
     3361 ttccagccca tgaatattaa agaatgacca tggcaattgg atgtcattca tgtgatgtgc
     3421 ataaaacatg ccttgatagg ccaagttgtg cacagtaaac accgacttcg ccggacgccc
     3481 gcgcgccgcc agatacgcag gcgcaaggcc tgcatgccag tcgtgcgcat gcaccacatc
     3541 aggacgccag aatgggtcaa gcccgctggc catttctgcc ccaacccacc ccagcagcgc
     3601 aaaacgcaat acgttgtcgg tataggcaaa taagttggta tcgtgatacg ggcttcccgg
     3661 acgatcatag agatgcggcg cgtcaatcag gtatatgcca accccgttgt aatgaccgaa
     3721 caacagcgtg atatgtccgg cgaaggtatc acgacgggat actacctgcg catcggtcac
     3781 gccacggcga atatcgggaa atgcaggcaa cagtacgcga gcgtcaacgc cgtctgcgat
     3841 ttgtgctgcg ggtaatgccc caataacatc agccagaccg ccggttttaa gcagcgggaa
     3901 catctctgaa catacatgta aaacttgcat tatcgctcct gtttatgccc taacttccgt
     3961 agcatttcgc gcgttaccag cacgatgcct tcttctgaac gatagaaacg acgtgcatct
     4021 tcctctgcgt tttcaccaat caccatgcct tccgggataa cacaagcacg atcgatgacg
     4081 cagcggcgca gacggcacga gcgacctacc catacttccg gtaacaatac ggcggaatca
     4141 atgttgcaga atgaattcac gcgaacgcgc gagaacagaa cggactgcac caccaccgaa
     4201 ccggagatca cacaaccgcc ggataccagt gagttaaggg tcatcccgtg gctaccggag
     4261 cgatcctgca cgaatttcgc tggcggtaat gattcattgt aggtgcgaat tggccaattg
     4321 cgatcgtaca tatccagttc cggcaccaca gaggccagat cgagattcgc tttccagtaa
     4381 gctttcagcg tacccacatc gcgccagtac ggctcggcat ccgggtcgga ttgtacgcaa
     4441 gagagcggga acgggtgcgc ataggccaga ccggcttcgg tgatcttggg aatcaaatct
     4501 ttgccaaagt cgtggctgga gttctcatca cgatcgtctt cttccagcag ttcatacaga
     4561 tagtcggcgt caaagacgta gatacccata ctcgccagag atttgctcgg atcgttcggc
     4621 attgacggtg ggttagcagg tttttcaacg aattcgataa ttttatcgtt ctcatcaacc
     4681 gccataacgc caaatgcgga ggcttcttca atcggtactg gcatacaagc aacggtgcaa
     4741 cgtgcgcctt tttcgacgtg atcgataagc atacgcgagt agtcttgctt gtagatatgg
     4801 tcgcccgcca ggatcaccac gtattccgct ttataacggc ggataatgtc gaggttttgg
     4861 gtgaccgcat ctgcggtgcc gcgataccag ttttcccctt tcattctctg ctgtgctggc
     4921 agcagatcga caaactcgtt catttcttca ttgaagaatg accagccgcg ctgaatgtgc
     4981 tgcaccagag tgtgggactg gtactgggtg atcacgccca tacgacggat cccggagttg
     5041 atgcagttag acagcgcaaa gtcgataatg cggaacttac cgccgaagtg tacggccggt
     5101 tttgctcgct tattggttaa atccttcagg cgggtaccac gtcctcccgc cagtatcagg
     5161 gcaacagatt tcaatggcag ctggcgcgcc aacattaagt gatcgttctt ctctaaacta
     5221 accatgacta actccttttt tatcatctct ggaacacaca caatccgtgt gcaggtccct
     5281 gccagacagc cgtaatcact gggttatcct ctccagcgaa tgggggaatg gcgtgccact
     5341 ccccagcagg taaaacaatc tctgttacct caagcgtggc gttaattgcg atcaaaaagc
     5401 gatccgagag cagaatttgc agctgtttcg gcccgttttg ccactcatcc gtgcttaaag
     5461 gttgagcata tcgatttagc caacggacat tgccatcgcc ttcttcccac cagcgattct
     5521 ccaccaaagc gggaatgcgc ttgcgcagat ggattaacgc ggcggtaaat gcggttaaac
     5581 cactgcttgc ctgcgaccag tccaaccagg ttaattggtt atcctgacag taggcattgt
     5641 tattgccatg ctggctgtga ccatgttcgt caccggccag taacatcggc gtaccctggg
     5701 agagcaacaa cgttgttaac aaggcgtgaa tactgtcgcg ccgccgttca accaggtcaa
     5761 gagaaccgcc taacccttct ttaccatgat tgttactgta attgttgttg gtcccgtcgc
     5821 gattttcttc tccgtttgct tcattgtgtt tatggttgaa gcaaacgcag tcgcgaagcg
     5881 taaaaccgtc atgcgcagtg acgagattaa tcgcggcact cggcagacga ccattacgtt
     5941 taaaaacatc gctggaggca gcaaaacgcc cggcaaacgc ccccagaggc aaatcataat
     6001 gtagccagaa acgacgggca gcatcgcgga aatgatcgtt ccactcggca aacagcggcg
     6061 ggaaatttcc cacctgataa ccaccagggg cgatatccca cggttcagca attaacttca
     6121 cctgcgagag caccgggcag ttctggatag cggtaaacaa cggcgcatcc tgacggaact
     6181 ctggcgtacg gcccatgact gccgccagat caaagcggaa accatcgacg tgacaggttt
     6241 ctacccaata acgcaggcag gcgctggcat aatccaccac cgccggatga ctcaaattga
     6301 gcgtgttgcc gcaaccggtc cagttgtgat aatcgccgtc ttctcttatc caataatagc
     6361 tacggttatc gatcccacgc agtgagaata acgggccgtc gaggtccagt tccgcactat
     6421 ggttgagcac gatatcaaga atgacttcga tacccgcttt atgcagtgct ttgattgcat
     6481 cgcgaaactc atccagcgcc gtttctggcg agcaggcata cgccggatgc agcgcaaaca
     6541 tcgccaccgg gttgtaaccc cagtagttac ttagccccat gcgttgcaga cgtggttcac
     6601 tggcaaactg cgccactggc agcagttcca gcgcggtaat gcccaattgt ttcaaatagt
     6661 tgatcatcac cggatgcccg agggctttat aagtgccacg gatctcgacc ggaatctccg
     6721 ggtgcaagta cgttaatcct ttgacatggg cttcataaat gatggtgctg tcccacggcg
     6781 tgcgcggcgg ggcatcatct tcccagtcat agtgatcaac caccactacg catttcggcg
     6841 caatggcggc gttgtcgcga tagtcaggtt cattatgacc ggcgtgcagc agcgggttat
     6901 ctttaaattc cccgtcaatt tgccgcgcgc aaggatcaat caacaacttc gccgggttaa
     6961 agcgatgccc ctcggcgggt tgccaggggc catgaacgcg ataaccataa cgcaaacccg
     7021 ggcgcgcatc cggcagataa ccgtgccaaa tgtcgccact gtgccctggc aagtcatagc
     7081 gatgttcctg gccattggcg tcaaagacac acagttctac ccgctcggca tgagcggaga
     7141 aaagtgtgaa gttgacgccc tgaccgtcgt aatgcgcgcc gaggggagcg ggtttgccaa
     7201 tggcgagttg tgtcattctg cctcccgaac cagccagata gtggccagcg gtggtagtgt
     7261 caggcttagt gaatgctgac gaccgtggct ggcaatctca tcgctgtgta ccgtgccgcc
     7321 attgcctgca ttactgccgt gatagtgcat ggaatcggta ttgaggattt cacgccattt
     7381 gcctggctga ttaatgccga agcgataatc atgacgcggc accggcgtaa agttactggc
     7441 aacgataatt tcgttaccct ctttatcgcg acgcacaaag atcagcaccg agcgttcttt
     7501 gtcatccacc accagccatt caaagccgta cgggtcaaaa tccagttcat gcattgcttt
     7561 atggtggcgg taggtgaggt tcagatcgcg caccagacgc tggacaccgt ggtgccagtt
     7621 atcgccacct tccaacagat gccagtcgag gctggcgtca tggttccact cacggccctg
     7681 ggcaaattcg ttccccatga acagcagttt cttgcccggg aatgcccaca tccagccata
     7741 gtaggcgcgc aggttagcga atttctgcca tgcgtcgccc ggcatgcggt cgagaatcga
     7801 ttttttaccg tggaccactt catcatgcga caacggcagg acgaagtttt cagtgtagtt
     7861 gtagagaatc ccgaaggtga gtttatcgtg atgatactga cgataaaccg ggtcgagctt
     7921 catgtagtcc agggtgtcat gcatccagcc gaggttccac ttgtaccaga agcccagacc
     7981 gcccatatcc tgcggacgag aaacgccagg gaaatcggta gactcctcag ccattgtcac
     8041 cgcaccggaa acctgctcac caagaatacg gttggtatta cgcaagaatt caatcgcttc
     8101 aagattctcg cgcccgccaa attcgttcgg gatccactcc ccctctttac ggctgtagtc
     8161 gcgataaatc attgacgcca ccgcatcgac gcgcagcgca tcaataccaa aacgttcaat
     8221 ccagtaaagc gcgttaccga cgaggaagtt actgacttca cggcgaccat aattgtagat
     8281 cagcgtattc cagtcctgat gatagccttc gcgcggatcg ctgtgttcat acaagttcgt
     8341 gccatcaaat tcggcaagcg caaagtcatc ggtcgggaag tggcctggca cccagtcgag
     8401 aatcacgttc agacccgctg cgtgtgcggc atcaatgaaa taacggaagt cgtcgcgagt
     8461 accaaaacgg cgggttggtg catacaggcc ggttggctga taaccccaac tgccatcgaa
     8521 gggatgctcg ttaatgggca gtagttcgag gtgggtaaag cccatccatt tagcataagg
     8581 caccagttga tcggccagct cgcggtagct caaccagaaa ttgttatcgg tgtggcgacg
     8641 ccaggagccc aggtgaactt cataaataga gattgacgca tcaaactgat tcgctttttt
     8701 gcgctcttca gtctgtacaa ccttttccgg cagcccgcaa ataagagacg cggtttccgg
     8761 gcgcatttgc gcttcgaagg cataagggtc ggacttcaga cgcaagttgc cattggcatc
     8821 aatcatctcg tatttataga gctgaccgtt atgcgcccca gggataaaca gttcccaaat
     8881 gccgctctct ttacgcagac gcatcgggtg acggcgaccg tcccagtagt tgaattgccc
     8941 aaccaccgag acccgacggg cgtttggagc ccaaacagag aaacgcgtac ctgtgacgcc
     9001 atccatagta tctgcatgcg cgcctaaggt ttcatacggg cgcaggtgag taccttcaga
     9061 taatagccag gcatccattt cctggattag cgggccaaaa cggtaaggat catcaatcag
     9121 gttttgctga ccatgccaga caacagccaa ctgatagcgg aaaaaattct tacgtcgcgg
     9181 aatgacaccg ctaaagaatc cccgtgagtc aagacactcc agttttgcga gtttgcgccc
     9241 ggttttcggt tcaatcaccc acacatcggt agcgtcgggt aaaagggcac ggacttccag
     9301 tcccgcggtg gttttatgca ttcccagtac ggaaaaagga tccgcaaaat ggcctgcaat
     9361 tagcgcgtta atcacgtctc tatcgatacg atcggacatg cttgtcttcc tgttttattg
     9421 tgtcacccca tccaattgga tttttgactt ctggttgtga catttttttg acctgaacgg
     9481 cgcagcactc tgtgcatcct ctctgcgtcg tcctcacttc aggtaaggct gtgaatactc
     9541 atgtattcag ccacccttaa agaatagcca atgctctatt taactcccgg taaatcatga
     9601 aacatctgcg cttactcctg tattacgcac taacaggggc ggcatcgcgc cccagattta
     9661 atgaataaag attacgccag ttgacgaagc atccgacgca gcggctccgc ggccccccac
     9721 agcagctggt cacccacggt aaaggctgac aggaactccg gtcccatatt cagcttacgc
     9781 aggcggccta ccggcgtggt cagcgtgccg gtaacggcag ctggggttag ctcacgcata
     9841 gtgatttccc gatcgttcgg aacgactttc gcccacggat tgtgcgcagc cagcagttct
     9901 tcgacggtcg gaatagacac atcttttttc aatttaatag tgaatgcctg gctgtggcag
     9961 cgcaatgccc cgacacgcac acataaacca tctaccggaa ttacggaaga tgtgttgagg
    10021 atcttgttgg tttccgcctg ccctttccac tcttcgcggc tctgaccgtt atcgagctgt
    10081 ttgtcgatcc acggaatcag gctacccgcc agcggcacgc caaagttatc caccggcagc
    10141 tcaccgctac gggttaaggt tgtgactttg cgttcgatat cgagaatagc agaggacggg
    10201 gtcgcgagtt catctgccac atggccatac agatggccca tctgggttaa taactcacgc
    10261 atatgtcgcg caccaccgcc ggaagcggcc tggtaggttg caacggacac ccaatcaaca
    10321 agatcattgg cgaataaacc acccaacgac atcaacatca ggcttacggt acagttaccg
    10381 ccaacaaaag tcctgatgcc attatttaat ccgtcggtaa tgacgtcctg attgacgggg
    10441 tcaagaatga tgatggcgtc atctttcatg cgcagagacg atgctgcgtc aatccagtaa
    10501 ccttgccatc cgctttcacg aagctttgga tagatttcgt tggtataatc gccgccctga
    10561 caggtcacaa tgatatcgag ggcctttagc gcctccagat caaaggcatc ctgaagtgtg
    10621 ccagtggttc cgccaaaaga cggcgcagcc tggccaagct gagaagtaga aaagaagaca
    10681 gggcgaatgg cgtcgaagtc gcgctcttca accatgcgtt gcatgagaac ggagccgacc
    10741 ataccgcgcc agccgataaa accaacattt ttcataagcg ttttttcctg caaagatgtg
    10801 tgctgtataa atgtgccggt ctcctcttgg cacatctttc accatacaaa aagcagccaa
    10861 agtcgcaagt gaaattaatc aatgatagcg aagccatcag taatgcgact tatcctgctt
    10921 tgttagcaca cagaaagtcc gcggcaatta tcagggaatt tgagttatga atgaaatcat
    10981 ttctgcagca gttttattga tcctgattat ggatccgctc ggaaacctgc ctattttcat
    11041 gtccgtactg aaacatactg aaccgaaaag acggcgggca atcatggtgc gagagttgct
    11101 tattgctctc ctggtgatgc tggtgttcct gtttgcgggt gagaaaattc tggcatttct
    11161 cagcctgcga gcagaaaccg tctccatttc tggcggcatc attctgtttc taatcgccat
    11221 taagatgatt ttccccagcg cttcaggaaa tagcagcggg cttccggcag gtgaagagcc
    11281 atttatcgtg ccgttggcaa ttccgttagt cgccgggccg actattctcg ccacgctgat
    11341 gttgttgtct catcagtacc cgaatcagat gggacatctg gtgattgctc tgctgctggc
    11401 ctggggcggc acctttgtca tcctgctaca gtcttcgcta tttttacgtc tgctgggcga
    11461 gaaaggggtg aacgcacttg aacgcctgat gggattgatt ctggtgatga tggcaaccca
    11521 gatgttcctc gacggcattc gaatgtggat gaaggggtaa cgaggagagt ttttcgaaaa
    11581 gaacccggta gcgtcacaac taccgggcga acaaacttaa ctcaacagct ggaacgcaat
    11641 catcccaacg atggcaccaa cagtgccgag gatggtttcc atcatggtcc aggttttcag
    11701 cgtttcggct tcggtcgcgc cggtaaattt accgaacaac cagaaaccgg cgtcgttaac
    11761 gtggctgaca acaatcgaac caccagcgat acaaatcgac agtgccgcca tttgcgcacc
    11821 ggagtagttc agttgttcaa tgaccggcat caccagcccc accgccgtta aacaggcaac
    11881 ggtggcagac ccctgaatga tgcgcactgc agcggccagc acgaagcagg tgatagcaat
    11941 cggcaggccc atgccggtta acgcttcgcc cagtgccgga cctacgccag agtcaaccag
    12001 cacctgtttg aacacgccgc ctgcaccaat caccagcaga atgatccccg ccggttgtag
    12061 cgcgtgaccg caaatctcca tcactttgtc ttttggcatg ccctgacgca ttgccaggcc
    12121 ataaatcgct accagacaag caaccagaat cgcggtaaat ggatgaccaa taaactcgaa
    12181 ccattcgtaa gcagttgatc cttctggcac aaaacgagcg gcaatggttt tcagccccac
    12241 cagcaccagc ggcaacagga tcagcgacag gctgaatccg aaggacggca ttttgccttc
    12301 gccgagatgc ggttcgctga tgtcgtcagg aatatgcaac tccacgtaac ggctgatgaa
    12361 attaccccac agcggcccgg caataatcat tcccggaatt gccgcacaca gaccaatcag
    12421 gatcatccag ccaaagtcgg cattcatctg cgatgccagc aacatcggcg ctggtccagg
    12481 caccagaaat gccgccgctg ccgccacgcc tgcgaataat gggattacca gcttcaccag
    12541 gttcgtaccg gtgtggcgcg ccattgagaa agcaacgcta atcagcagaa ctatcgccac
    12601 ttcaaagaac agcggtagcg cacagaccaa ccccgcaagg ccgatggcat aatgcgcgcg
    12661 gctgtgaccg aaggatttga gcattttgac ggcaatctga tcgactgcgc cggtttcatg
    12721 taagatcttg ccaaacatag ctcccagggc gacaaccacc gccaggaagc cgagggggcc
    12781 tcccatccct ttttccatcg tcgctgcgat tttatcgagc ggcataccgg aaaaaaggcc
    12841 agcccccatg gacaccacca tcaaagccag gaaagcgtgc atacgcgcct tcatgactaa
    12901 aaacagcagc agtaaaacag accctactgc tgttaaaaca agcgttaatg tagtcactac
    12961 ttatttgcct tttttaataa cctcaatggt gcttgccaca acaccttcca gcggttgatc
    13021 gatatccacc accagtacat cggtttcgtc cgcacccggc tcctgcagcg tttcaaactg
    13081 cgtcaccaac atttgggttt taaagaaatg gcctttgcgc gctttcaagc gactttcaat
    13141 cacatcaaaa tcgcctttca ggtagatgaa agagagattc ggattacctt cacgcagcaa
    13201 gtcgcgatag tgctttttca gtgcagaaca gacgatcagc gacactttat tggtgcgcag
    13261 catagcaaac gcggcgtcgt tcagcgcctg caaccagggt ttgcgatcgt cgtcattcag
    13321 cggttcgcca gacgccattt tttcgatatt gcgccgtgga tggaggaaat caccatcaag
    13381 aaacgcggca tgaagttgat gcgccacttc actggcgacc gcagatttgc cgctgcccga
    13441 tacgcccatc aagacgtaaa tgtggtgatc atggttagtc gtgctcaaag tggtgccccc
    13501 acaatacaag aattaaaaat gttacgggta actgttatcg gtaacattgt ccagccggac
    13561 aatatcagaa gcaatatcca tccgtgcctt aagtgtataa gtgtgagcta cttcaaattt
    13621 gtaggcttaa atagatccgc ccggtgacaa ggtgaaacct aaatctaaca ttttcggtgt
    13681 cacagattcg ccacgaatac gcgccagcag gcgttcagcg ccaatactgc ccatccgctc
    13741 acgcggcgtc agcacgctcg ctaaccgcgg ctccatcacc tggccaatgt catgaccgtg
    13801 gaaaccggca atcgccatat cgtcaggaac cttcaatccc agacgctgac attcaaacgc
    13861 cgcgccgacc gccaggtcat cgttggtaca gaacacgcca tccagctgcg gatattcccg
    13921 ccgcgcctgg cgaatcagtt caataccgga agagtaagaa gaagattgct caaccatcac
    13981 gctatacgac accagacctg catccagcat cgcctgttcg tatcccttct gtttgatgat
    14041 agtacgttcg tcgagacgcg cgccgagata ggcaatgtgg caatgcccgc gagcaataat
    14101 ggcggtggtc atctggcgtg ccgcttcaaa gttatcaaaa ccgacggcga tatcgaggca
    14161 cggcgactgg ctgtccatga gttccaccac cgggatcccc gccacttcaa tcatctttaa
    14221 ggtgcgcggc gtgtgggtac gttcggtgag gatcagtccg tcgatattcc atgagagcat
    14281 ggattcgaga cgttcttgct ccatttccgg tttataaccg tagtgagcca gcatggtctg
    14341 ataaccgtgc gcgtcggtga cgctttcgat tccgcgtaat acttccgcga aaacctggtt
    14401 ggtgagagaa ggtaacagga cgccaatcgc ccggctggtg gcgttagaga ggatatcggg
    14461 cgcacgattg ggaatatagc ccagttcatc aagagcggcg gcaatcttgc cgcgtagagc
    14521 gacggaaacc tgctccgggt tgcgtaaaaa acggctgacc gtcattttgg tcacgcctac
    14581 acggtcagcc acatcctgaa gtacgggtct tttctttttc atcgtcctga aggtacaaaa
    14641 gagatagatt ctcttagttt aacacggacg catcagaacc ttcccgggga aaacagtgct
    14701 tgtttacaat tattagatat acactaaatc aattgcatcg cattgtgcta acgacgcggc
    14761 aaaaccccgg aagcgtgcat cagcacgcga ccggagcgag cgaggaagcc tgcaaaaagg
    14821 caggcttcaa agatgccgtt gagttttaaa ccggcggcag atcgaacagt aacacttcgc
    14881 tgtcgctatc cgcatggatg gagattgcct gctcatccca gattgccaga ccatcgctgg
    14941 tcgaggcttt cacgccgtta atggtgacat tgcctttcac cacctggatc cagacgcggc
    15001 gttcagcggc aatctgatgc accgactgct catctttcag caacgcccag cggtacagtt
    15061 ccatatcctg atgcactttc aatgaaccat ctcgcgcatc cggcgagagc accagctgtt
    15121 tgccctgtac ggcatcgaag cgacgctgtt cataacgcgg cgtaataccg ttttcttcag
    15181 gcatgatcca gatctgatac agatgcagac gctcggtgct gcttgggttg tactctgagt
    15241 gacgaatacc cgtacccgca ctcataatct ggaactcacc cgccggaacc tgctctttat
    15301 tgcccatgct gtcctgatgc tcaacagtac cttccagcac gtaggtcaaa atttccatat
    15361 ctttatgcgg gtgagtgccg aagccctgcc ctgcttcaat cacgtcgtcg ttaatcacgc
    15421 gcagcgcgga gaagcccata aagttcggat cgtaatagtt ggcaaaagag aaagtatgcc
    15481 aggagtccag ccagccatga tttgcatgac cacgttcatt tgctttgcgt aagtagatca
    15541 tttgtattcg ccccctgaat gatttcgatg ggcttagtgt ggacccgatc tgcctgggat
    15601 gatagagggt gaaaattgcc ccctctgttc aaaaaaattg aactattcga ggggccatca
    15661 aacttaattc gcgaaagtca ctgtggaggg agaggcttgc tcaaatccgc gttcaaggat
    15721 ttccagattg gtaagaactt cagattcctt gacgtaattt ggcgcaccgt gggtgatggt
    15781 ttgatacaac gcatcataaa cgcgcccgta atcgcccatc tccggcttca tctcttctct
    15841 gaccgtcacg ccctcgtcat tgacatactc cggcacaccg accgaatcat ccgctgcgaa
    15901 tcccggttcg cccggcataa tattagcctt caggctggtt tcctgctggt cgataccgta
    15961 tttaataaac gaacctttct taccgtgaac gataaatttc ggataatcga ttttcaccag
    16021 atggctggtt ttgacgatgg ctttcaggtc gccataaaac agttgcgctt caaaggtgtc
    16081 gtcaggattg gctttattac gcaggctgcg gatgtcataa gcgacgtgat ccgggcgacc
    16141 gaacagagaa ataatctggt ccatcgtatg cacaccaagg ccataaaacg cgccatcctg
    16201 cggcagccca ggtttggttt ctgccaccgg gcggtaatag tcaaaatggc tttccacttc
    16261 aacaatctct cccaacttgc cactttcaat cgcttttttc gctgtcagga agcaggagtc
    16321 aaagcgacga ttctgatacg gcgtgacgct cagccctttg cttttcgcca acgcaaacag
    16381 ctccttcgcc tgggcaagcg tcggggtgaa cggtttttcg accagcacat ttttcccggc
    16441 ttccagcgcg cgtttcgcat actcgaaatg gctgtccgcg tgggtgcaga caacaaccag
    16501 cttaacatcg ggatcgttta gtacttcgtc gagatcgctg atgaaatgga tatgggaata
    16561 aatgggagcc tgttcttccg gcttcgcatg gcgacgaaaa atatgcgcga catgccagct
    16621 atccttgcgg ttaagtacat acggcagatg gtaacgggtg gtgcttttgc cgaagccaat
    16681 aaaggcgcag ttgatgacca tgatttcgtc ctttttaagg tggttattta caccttagcg
    16741 caaagcggac gtggttccta ctggagtgcg cataacgaac acaagcactc ccgtggataa
    16801 attgagaacg aaagatcaaa aaaaagccag cacccggctg gctaagtaat actggaagca
    16861 atgtgagcaa tgtcgtgctt tcaggttctc cgcgagggtc ttcctgatcg cgagacaata
    16921 ataatcattc tcattcgcac ttgtccaaca ctttttgcaa aaaaatgcat ttgactcgca
    16981 tttgaaagtc aatgatgttg aaagggacat ttaccccaaa gaggacaaag gaatgagtga
    17041 gatagtaata cgccacgcag aaacacggga ttacgaggcc atcaggcaga ttcacgccca
    17101 gccggaggtg tattgcaaca cactacaggt gcctcatcct tccgatcata tgtggcagga
    17161 gcgactcgcc gatcgtcccg gcatcaagca actcgtcgcc tgtattgatg gagacgtcgt
    17221 gggccatctc accattgacg tgcaacagcg cccacgccgc agtcatgttg ccgattttgg
    17281 tatctgtgtc gactctcgtt ggaagaaccg cggcgtcgcc agcgccctga tgcgagagat
    17341 gattgaaatg tgcgacaact ggttgcgggt agatcgcatt gaactaaccg tgtttgtcga
    17401 taacgccccg gcaattaagg tctataaaaa atacggcttt gaaattgaag ggactggtaa
    17461 gaagtacgca ttgcgtaatg gtgaatatgt cgatgcatat tatatggcgc gggtgaagta
    17521 agatagtgcc ctttttctga gatggaaaaa gggtgtcatt caaaatcgac ataccttcct
    17581 ttaaggtatt tatttaccca atacatatat tgagatttaa ctcataatta cttcctaaag
    17641 tgtaatattt tattttttaa tatatacgcc tacaatttcc tggagtaaat aaataacaat
    17701 taacaagcat aatattgcca ttgataaaat agcatgccat aaaaggactt ttcagggatg
    17761 agtaatattg tttacctgac agtaacggga gaacaacaag gaagcatctc cgcaggttgt
    17821 gggacttctg agtctacagg taatcgttgg cagagcgggc atgaggatga aatatttaca
    17881 ttctcactct taaataatat taataatacg gggcttggtt cacagttcca tggtataaca
    17941 ttttgtaaat taattgataa aagcactcca ttatttatta attccattaa caataatgaa
    18001 caattattta tgggatttga cttctatcga ataaatagat ttggtagatt ggaaaagtat
    18061 tattatatac aactaagagg cgctttttta tcggctattc atcaccagat cattgaaaac
    18121 caactggata cagaaacaat aactattagt tatgaattta tcctctgtca acatcttatc
    18181 gcaaataccg agttcagcta tttggcactc cctgaaaatt ataaccgatt gtttttacca
    18241 aattcaaaaa accaaacaaa taatcgtttc aaaacgttaa acagcaaagc tattggcagg
    18301 ctacttgctg ctggtggcgt atacaatggg aacattgaag gattcagaga tactgcggaa
    18361 aaactgggtg gagatgcaat aaaaggctat gatcaaatac taaatgaaaa aacagcgggc
    18421 atagcgatag caacagcatc tattctttta acaaagcgtt ctaatgttga tacatataca
    18481 gaaataaata gttacttagg caaacttaga ggtcaacaaa aacttcttga tggtatagac
    18541 ataatagaaa taatatacat taagagacct tcaaaagact tagctaactt acgaaaggag
    18601 tttaataaaa ctgtaagaaa aaattttctt atcaaacttg caaaaacctc cgaagcatct
    18661 ggaagattca acgccgcaga ccttttaaga atgagaaagg gcaatgttcc tctaaattat
    18721 aatgttcacc ataaactatc tctagatgat ggtggtacta atgatttcga aaatttagta
    18781 ttaatcgaaa acgaaccata tcataaagtt tttactaaca tgcaatcacg aatagctaag
    18841 ggaatattag taggtgaaag caaaatcact ccctgggcca ttccatctgg ctcaatttat
    18901 cctcccatga aaaatgtaat gaacgcatcc cacacaatta aacacggagc agtatgatgg
    18961 ttaaaagggt gaaactggca ggtgtggagc ctcgcagatt tccggcatca tagtgcccaa
    19021 tacgggatgc ataaagctcc ctcagactgg aaactccaca aatgaaatat acaccggttg
    19081 gcgttgatat cgcaaaacat gtcattcaga ttcacttcat caatgagcac acag
//
LOCUS       DAJVUY010000078        18869 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.078, whole genome shotgun sequence.
ACCESSION   DAJVUY010000078 DAJVUY010000000
VERSION     DAJVUY010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18869
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.078"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..909)
                     /locus_tag="OQQ72_002377"
     CDS             complement(<1..909)
                     /locus_tag="OQQ72_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS2012077.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHLPKDLRELCDLDS
                     LKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQMQAL"
     gene            1376..2608
                     /gene="mdtM"
                     /locus_tag="OQQ72_002378"
     CDS             1376..2608
                     /gene="mdtM"
                     /locus_tag="OQQ72_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HCS2012078.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2649..3929
                     /locus_tag="OQQ72_002379"
     CDS             2649..3929
                     /locus_tag="OQQ72_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HCS2012079.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4045..5197
                     /locus_tag="OQQ72_002380"
                     /pseudo
     CDS             4045..5197
                     /locus_tag="OQQ72_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5207..5975
                     /locus_tag="OQQ72_002381"
                     /pseudo
     CDS             5207..5975
                     /locus_tag="OQQ72_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5972..6229
                     /locus_tag="OQQ72_002382"
     CDS             5972..6229
                     /locus_tag="OQQ72_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HCS2012080.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6183..7154
                     /locus_tag="OQQ72_002383"
     CDS             6183..7154
                     /locus_tag="OQQ72_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS2012081.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7222..8394
                     /locus_tag="OQQ72_002384"
     CDS             7222..8394
                     /locus_tag="OQQ72_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2012082.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALARGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIALGNEYVLAGL
                     HFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAILYG
                     LAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLT
                     ANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGF
                     VTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS"
     gene            complement(8407..8962)
                     /gene="kptA"
                     /locus_tag="OQQ72_002385"
                     /pseudo
     CDS             complement(8407..8962)
                     /gene="kptA"
                     /locus_tag="OQQ72_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151849.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
     gene            9212..9894
                     /locus_tag="OQQ72_002386"
                     /pseudo
     CDS             9212..9894
                     /locus_tag="OQQ72_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9891..10352
                     /locus_tag="OQQ72_002387"
     CDS             9891..10352
                     /locus_tag="OQQ72_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiG family protein"
                     /protein_id="HCS2012083.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTV
                     LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV"
     gene            10365..11537
                     /gene="iadA"
                     /locus_tag="OQQ72_002388"
     CDS             10365..11537
                     /gene="iadA"
                     /locus_tag="OQQ72_002388"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS2012084.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11602..12513
                     /gene="hypT"
                     /locus_tag="OQQ72_002389"
                     /gene_synonym="qseD"
     CDS             11602..12513
                     /gene="hypT"
                     /locus_tag="OQQ72_002389"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HCS2012085.1"
                     /translation="MDDCCAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="OQQ72_002390"
     CDS             complement(12506..12898)
                     /gene="iraD"
                     /locus_tag="OQQ72_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HCS2012086.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12895..12978)
                     /gene="idlP"
                     /locus_tag="OQQ72_002391"
     CDS             complement(12895..12978)
                     /gene="idlP"
                     /locus_tag="OQQ72_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iraD leader peptide IdlP"
                     /protein_id="HCS2012087.1"
                     /translation="MENEHQYSGARCSGQAAYVAKRQECAK"
     gene            13570..14400
                     /locus_tag="OQQ72_002392"
     CDS             13570..14400
                     /locus_tag="OQQ72_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS2012088.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYEYTRMDTENIY
                     LLPLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKI
                     TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGYNVPGYA
                     GTTIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGN
                     DPIIGIEAYPGTAEIHAKMGYNVIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK
                     "
     gene            complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="OQQ72_002393"
     CDS             complement(14541..15314)
                     /gene="uxuR"
                     /locus_tag="OQQ72_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HCS2012089.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA"
     gene            complement(15529..16989)
                     /locus_tag="OQQ72_002394"
                     /pseudo
     CDS             complement(15529..16989)
                     /locus_tag="OQQ72_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
     gene            complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="OQQ72_002395"
     CDS             complement(17070..18254)
                     /gene="uxuA"
                     /locus_tag="OQQ72_002395"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HCS2012090.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            18594..18798
                     /locus_tag="OQQ72_002396"
                     /pseudo
     CDS             18594..18798
                     /locus_tag="OQQ72_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646216.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4409 a         4796 c         4738 g         4926 t
ORIGIN      
        1 taatgcctgc atttgctctg ccgaaagtcc ggtatatcgt tgtatccatt caggatcggc
       61 cccattctgc aacaacaatc ggaggaggct ccgttcccct tctactttcc cttctttcct
      121 ccccctctcc cttcccaaca gccatccatc attatgaatt cgctctgcaa ttgtcattat
      181 tcgctccctg tggtgtggca ttcgcctggt aagttcgctg ataaacgcct taaaacgcgc
      241 ttcatcgcca gtcagtaaaa tgtaatttaa cagcgcagtt atctggctgt cattagcaca
      301 ctctgtaacc agtaatacta ccagttggtc aataagcccc atcaaatcgc gctggcgaat
      361 atgcttttgg atcaactcca acagggcgac tctgcgatgc tgcacaatct cgtcgtctgg
      421 cacgacagtg acatccacca gcgggaacgc tgcgctataa agtttccgtg cggtagtcgg
      481 ggcggcaaat tcgtccagcc agcacaggga ccaggggtaa ggactacggc taccgtgata
      541 aaacagcatc gggataacca gcggtagcgg ccggcgttta tcatgctcga tatggcgctg
      601 catcaccgcc atggaatatc gcatcaggcg aaatgccata tgaatatcct cgcggctctg
      661 atgttcaatc actacgtaaa tataaccatc accttcacgg gtctttaccg accacagaat
      721 atcggagtgt agcgcccgca atttttcatc gacaaagctg gcggattcca gttttaagct
      781 gtcgagatcg cacagttcac gtaaatcttt gggtaagtgg atctccataa aatcccgcgc
      841 ggtgtcaggg tgagtgagaa aggatttaaa taatgcgtca tgtggcgtgc tggtcgtgaa
      901 gtttgtcatg gcgatccgtc acctgtagat aagatggccc gactttagcg actaacaaaa
      961 ccattctcac ccggcaattt ctcgttcccc gaggtgcttt ccaggcgtct gcaaacgata
     1021 catttttccg gaaacaggct cgcgttttac atttcctgta cccggcagat attccccttt
     1081 ccaccgcgct cttttgatta accgcaaatt ttaattacac ttaaggtgta tattttctat
     1141 gcaacccatc aattaaagag gtgtaatgtg ctgatgacta tttgtaatcg ttatacattc
     1201 tgacctggag tcagaaggta tttctctgtc tgtgtgttca caggcagtgt ggttgattac
     1261 atgaaattca gtacatttgc agtctcgttg cccttctcgc ctgcctttcg tcattaccga
     1321 cggtattgaa tttcgttttc cccgttgggg ttctccgaac aaggagttgt ttgttatgcc
     1381 acgttttttt gcccgccatg ccgccacgct gtttttcccg atggcgttga ttttgtatga
     1441 ctttgccgcg tacctgtcga cggatctgat ccagccgggg atcattaatg tggtccgtga
     1501 ttttaatgcc gatgtcagtc tggccccggc agccgtcagt ctctatctcg cgggcggtat
     1561 ggcgttacag tggctgctgg ggccgctttc cgacaggatt ggccgcaggc cggtgctgat
     1621 taccggggcg ctaatattta cccttgcctg cgctgcgaca atgttcacaa cgtctatgac
     1681 acagtttctt atcgcgcgtg caattcaggg caccagtatc tgttttattg ccaccgttgg
     1741 ttatgtcacg gtgcaggagg cgttcggcca gacaaaaggg atcaagttga tggcgattat
     1801 cacctccatc gtactgattg cgccgattat tggcccgctt tccggcgcag ctctgatgca
     1861 ctttgtgcac tggaaagtcc tttttgccat cattgcagtt atgggtttta tctcatttgt
     1921 tggcttactg ctggcgatgc cagagacggt gaagcgcggc gcggttccat ttagcgccaa
     1981 aagcgtcttt cgcgattttc gtaatgtctt ttgcaatcgg ctgttcctct ttggcgcagc
     2041 aaccatctct ttaagctata tcccaatgat gagttgggtg gctgtctcgc cggtgatcct
     2101 gatcgacgcg ggcagcttaa caacttcgca gttcgcctgg acacaggttc cggtgttcgg
     2161 cgcggtgatt gtcgcgaatg ccatcgtggc gcgtttcgtt aaagatccga ccgaaccgcg
     2221 ctttatctgg cgtgctgtac ccattcaact ggtcggcctc gcgctgttga ttatcggcaa
     2281 tctgctgtca ccgcacgtct ggctgtggtc ggtgctgggc accagtttgt atgctttcgg
     2341 gattggtttg atcttcccga ccttattccg ctttacgctt ttttccaata acttaccgaa
     2401 agggaccgtc tccgcatcgc tgaatatggt gatcctgatg gtgatgtctg tctcggtcga
     2461 aatcggccgc tggctgtggt ttaacggcgg tcgcttgccg tttcatctgt tagccgtcgt
     2521 ggcgggcgtt atcgtcgttt tcaccctggc aggattgctt aatcgcgtgc gccaacatca
     2581 ggctgccgag ctggcggagg agcggtgatt tttgcgcgat cctgccgtca ggctctattc
     2641 ttaacgttat gaataaactc attgaactca gacgcgccaa aatgttggcg ctctctttac
     2701 tgcttatcgc cgctgctacc tttgtcgtta cgctgttttt gccgcccaat ttttgggtga
     2761 gcggcgtgaa ggcgattgct gaagcggcga tggtcggcgc gctggcggac tggtttgcgg
     2821 tggtggcgct gtttcgccgc gtgccgattc cgatcatttc tcgtcatacg gcgattatcc
     2881 cgcgtaataa agaccggatt ggcgaaaatc tcggtcagtt cgtgcaggaa aaatttctcg
     2941 atacccagtc gctggtggca ttgattcgac gtcacgaacc ggcgttgttg attggcaact
     3001 ggtttagtca gccggagaac gcccgccgcg ttggtcagca tctgttgcag atcatgagcg
     3061 gttttcttga actgaccgat gatgcgcgta ttcagcgcct gcttaagcgc gcggtccatc
     3121 gggcgattga taaggtcgat ctttccggaa ccagtgcgtt gatgctggag agtatgacca
     3181 aaaacgatcg tcatcaggtg ctgctcgata cgctgatcgc acagttgatc gcccttctcc
     3241 agcgcgataa atcgcgcaag tttattgccc agcaaattgt tcgctggctg gagagcgagc
     3301 atccgctgaa agccaaaatt ttgcctactg aatggctggg cgaacatagc gcggagttgg
     3361 tttctgacgc ggtgaattct ttgcttgatg atatcagccg cgatcgtgcg catcagatcc
     3421 gtcatgcgtt tgatcgcgcc acttttgccc tgatcgacaa gctgaaaaac gatccagaaa
     3481 tggcagcgcg agccgatgcc gtaaaaagtt atctgaaaga agatgaagct tttaaccgct
     3541 atctcagtga attgtggggg gatttacggg aatggctgaa agcggatatc aacagtgaag
     3601 attctcgtgt gaaagaacgt atcgcgcggg cgggtcaatg gtttggcgaa acgttaattg
     3661 ccgatgatgc cttgcgggca tcgttaaatg gtcacctgga acaagccgcg caccgcgtcg
     3721 cgcctgagtt ttccgcattc ctgacgcgcc acatcagcga tacagtaaaa agctgggatg
     3781 ctcgggatat gtcgcggcaa atcgagttaa atatcggcaa agatctgcag tttatccgtg
     3841 tcaacggtac gctggttggc ggttgtattg ggctaatttt atatttgttg tcgcagctcc
     3901 cggccttgtt ccccctcagc aatttttaga aatccatgaa aaactaagtg gctaaccgcg
     3961 agagagatca aataaaccac actaaaagaa tggtaataat gtggcctctt ttcattatct
     4021 cccgtggtac ggggaaggaa aatcatgtca cttatcaccg atctacccgc cattttcgat
     4081 cagttctctg aagctcgcca gaaaggcttt ctcaccgtca tggatctcaa ggagcgcggc
     4141 attccgctgg ttggcactta ctgcaccttt atgccgcaag agatcccgat ggcagccggt
     4201 gcggttgtgg tttcgctctg ttctacctct gatgaaacca ttgaagaagc ggagaaagat
     4261 ctgccgcgca acctctgccc gctgattaaa agcagctacg gcttcggcaa aaccgataaa
     4321 tgcccctact tctacttttc ggatctggtg gtcggtgaaa ccacctgcga cggcaaaaag
     4381 aaaatgtatg aatacatggc ggagtttaag cccgttcatg tgatgcagtt gccgaacagc
     4441 gttaaggacg atgcctcgcg tgcgttatgg aaagccgaga tgctgcgctt gcaaaaaacg
     4501 gtagaagaac gttttgggca cgagattagc gaagatgctc tgcgcgatgc cattgcgctg
     4561 aaaaaccgcg aacgtcgcgc actggccaat ttttatcatc ttgggcagtt aaatcctccg
     4621 gcgcttagcg gcagcgacat tctgaaagtg gtctacggcg caaccttccg gttcgataaa
     4681 gaggcgttga tcaatgaact ggatgcaatg accgcccgcg ttcgtcagca gtgggaagaa
     4741 ggccagcgac tggacccgcg tccacgcatt ttaatcaccg gctgcccgat tggcggcgca
     4801 gcagaaaaag tggtgcgggc gattgaagag aatggcggct gggttgtcgg ttatgaaaac
     4861 tgcactgggg cgaaagcgac cgagctaatg cgtggcggaa acgggcgatg tctacgacgc
     4921 gctggcggat aaatatctgg cgattggctg ctcctgtgtt tcgccgaacg atcagcgcct
     4981 gcaaatgctc agccagatgg tggaagaata tcaggtcgat ggcgtagttg atgtgatttt
     5041 gcaggcgtgc catacctacg cggtggaatc gctggcgatt aaacgtcatg tgcgtcagca
     5101 gcacaacatt ccttatatcg ctattgaaac agactactcc acctcagatg tcgggcagct
     5161 cagtacccgt gtcgcggcct ttattgagat gctgtaagga gtggcagtga catattcgat
     5221 tggcattgat tctggttcta ccgccaccaa agggatctta ctggcagacg gcgtgattac
     5281 gcgccgtttc ctcgttccaa caccctttcg tccggcaaca gcaattactg aagcctggga
     5341 aactctgcgc gaagggttag agacaacgcc gtttctgacg ctcaccggct atggacggca
     5401 actggtggat tttgccgata aacaagtgac ggaaatctcc tgtcacgggc tgggcgcacg
     5461 gtttcttgcg ccagcaacgc tgcgcggtaa tcgacatcgg tggtcaggac agcaaagtga
     5521 ttcagcttga tgatgacggt aacctgtgcg atttcctgat gaatgacaaa tgcgcggcgg
     5581 gcaccgggcg tttcctggaa gtgatctcgc gcacgcttgg caccagcgtc gagcaactcg
     5641 acagcattac cgaaaatgtc acgccgcatg ccatcacgag tatgtgcaca gtgtttgccg
     5701 aatcagaagt gatcagcctg cgctcagcgg gcgtcgcgcc agaagcgatt ctcgccggag
     5761 tgattaacgc gatggcgcgg aggagtgcca atttcattgc tcgtctctcc tgtgaagcgc
     5821 cgattctgtt tactggtggc gttagtcatt gccagacgtt tgcccggatg ctggaatctc
     5881 acctgggaat gccggtaaat acccatcctg atgcgcaatt tgctggcgca attggcgcgg
     5941 cggtaattgg tcaacgagtg aggacacgcc gatgaaagag tttttatttt tatttcactc
     6001 cacagtcggc gtcatacaaa ctcgcaaagc gttgcaggca gcgggcatga cttttcgcgt
     6061 cagcgatatt ccccgtgatt tacgcggcgg ctgcgggtta tgcatttggc tgacctgtcc
     6121 ccccggcgaa gaaatacaat gggtgatccc tgggctgact gagtcaattt attgccagca
     6181 ggatggtgtc tggcgctgca ttgcacatta ccgggtttct ccgcgttaag gattcattaa
     6241 ggtcgctacg tatacttctc gatatcttat tgatttgcct taaagggatt accgtgacaa
     6301 aaagtatttc gttaagtaaa cgcatctccg ttattgtgat tctttttgcc attgtggcag
     6361 tgtgtacttt cttcgtgcaa tcttgcgccc gtaaaagcaa tcatgcagca tcatttcaga
     6421 attaccacgc caccattgac ggcaaagaaa ttgcaggcat aacgaataat atctcttcgc
     6481 tgacctggtc ggcacaaagc aatactcttt ttagcactat caacaaacct gccgccattg
     6541 ttgaaatgac caccaatggt gattttatcc gcacaattcc tctggatttt gttaaggatc
     6601 tcgagacgat cgaatacatt ggcgataatc agtttgtcat tagcgatgag cgcgattacg
     6661 ccatttatgt gatttcactg accccaaact cggaagtaaa aatcctcaaa aaaataaaaa
     6721 tcccgctgca agactcccca accaattgcg gttttgaagg gttagcttat tctcgccagg
     6781 atcacacttt ctggtttttt aaagagaaaa atccgattga ggtctacaaa gttaacgggc
     6841 tgttaagtag caatgaatta cacatcagca aagacgaggc actacaacgg caatttactt
     6901 tagatgatgt gtccggcgca gaatttaacc agcaaaaaaa tacgcttctg gtgctgtctc
     6961 atgaatctcg cgcactccag gaagtaaccc tggttggcga ggttatcggt gaaatatcac
     7021 taaccaaagg tagtcgaggt ttgtcgcata acatcaaaca ggccgaaggg attgcgatgg
     7081 atgcctctgg taatatttat atcgttagcg aaccaaatcg tttttatcgc tttaccccta
     7141 aatcatcgca ttaacaggct ggcatatttc acctttttgt tattaacttg ttaacaacaa
     7201 aaatgacata caaggttaaa catgccttcg tcctcgcatc ccgtagaacg cttttctttc
     7261 agcaccgcgc ttttcgggat gctggttctg accctaggta tgggattagg tcgcttcctt
     7321 tatacgccta tgttgcccgt cattatggcg gaaggggcgt tttcatttag ccagctctcg
     7381 tggattgcca gcggcaacta tgcggggtat ctggctggca gtctgctatt ttcgtttggc
     7441 gcatttcacc agccgtcgcg cctacgccca tttctgttgg tttctgccct ggcgagaggg
     7501 ttgttgatcc tcgcaatggc atggttgccg ccatttattc tggtgttatt gattcgcttc
     7561 ctggcgggtg tcgccagcgc cggtatgctg atttttggtt cgacgctgat tatgcagcac
     7621 acgcgccatc cttttgtgct ggcagctttg ttttctggcg ttggcattgc actgggcaac
     7681 gaatatgttc tggcaggcct gcattttgcc ttctcctcgc aaacgttatg gcaaggcgcc
     7741 ggggcgcttt ctggcatgat gctgattgca cttacgcttt taatgccctc gaaaaaacac
     7801 gccatcgcac caatgccatt ggcaaaaacg gagcaacaga taatgagctg gtggttactg
     7861 gctattctgt acggccttgc gggatttggt tatatcatcg tcgcgactta cctgccgctc
     7921 atggcgaaag atgcaggctc accattgtta accgcccatc tctggacgtt agtcggctta
     7981 tcaattgtgc caggctgctt tggctggcta tgggcagcaa aacgttgggg ggctttgcct
     8041 tgcctgacgg cgaatttgct ggtgcaggct atcagtgtgc tgcttactct cgccagcgac
     8101 tctcctctct tgcttatcat tagtagtatc ggttttggcg gtacctttat gggcacgaca
     8161 tctctggtga tgactatcgc ccgccaactg agcgttccgg gaaatctcaa tcttttaggc
     8221 tttgtgacgc tcatttacgg cattggacaa atcctcggcc cggcgctgac cagtatgctc
     8281 ggcaatggaa catcggcgct tgccggcgcc actctctgcg gcgcggcggc gttgtttatt
     8341 gctgcgctta tcagcacagt acaattattt aagctgcaag tggtcacttc atgaggagtg
     8401 tttcccttac cactcaagaa attcgaccgc aaccgttgat gtcagccaga ctccgttttc
     8461 cgcttgccag aaaggaatgc ctcgtttcgc catttcctgt gctttgacgg ttaagacaac
     8521 cggcgatccg tgtcttgctc ccactttgcg tgccgttgct tcatcagcag agagatgcac
     8581 gtaatgacga tcccctgcaa tcagcccctg ttttttttat ctcgtcaagg aaacggcttg
     8641 ccgtaccgtg gtagagaaac tgtggcggtg ttttttcggc aaaggaaata gcgacctgcg
     8701 aagtcgaatg cccctgaacc gcgcggatgc acctaccatc actggaataa ctaaaacgct
     8761 ttttatcgct ggttgcgacc acggtatcca gcaatgcacg ggttaatcgc ttgcccgctt
     8821 tttgggcaca aagtatgagc ttatcgatat ccgcccatcc ttcacggtcc agtacgatac
     8881 caatcgcctc cggtttgtgt cggaggacaa aacttaaaaa cttgctcgta tccgccagct
     8941 ctttttcgtt gtgctttgcc atctcgtttt cgtccctgga ttttctgttt ttatttacca
     9001 atgtcattgt cactgggttt atgaattttc tgcaactcaa tcctgcgcag aaccttttcc
     9061 acacagcgta atgtttcccc tatgcaaaaa acgcatagcc agaaacatac ttgcattttc
     9121 cccataccca catggctgat aaggtttttc agttccagga attttcctgg ctcaagcaac
     9181 acacaaacac aaaaaaacaa tggggattgt tatgacacaa caaggggatg ctgtagccgg
     9241 ggagctggcg acagaaaaag tgggcattaa agggtatctg gctttttttc tcaccataat
     9301 cttttttccg gtgttttttc cggaacagac agctggtggc gcgtttttga tttttccgtt
     9361 ctgaacggat cgtttgggca actgcctggt gcgaacggag ccaccacctc atttcgcggc
     9421 gcgggtggtg cgggggctaa agatggcttt ctctttgcgc tggagctggc accgtcagtc
     9481 attctctctc tggggattat ttcaattacc gatggtcttg gtggattacg cgccgcgcag
     9541 cagttaatga cacctgtgct aaaaccgttg ttgggcattc cagggatctg ctcgctggcg
     9601 ctgatcgcta acttgcaaaa cactgatgcc gccgccggta tgaccaaaga gctggcgcag
     9661 gaaggtgaaa ttaccgaacg cgataaagtg attttcgccg catatcaaac cagcggtagc
     9721 gccatcatca ccaactactt ctcttccggc gtcgcggtgt tcgcctttct gggcacgtcc
     9781 gtaatcgtac ctttagccgt catcctggtg tttaaatttg tcggagccaa cattttgcgc
     9841 gtctggctta acttcgaaga acgtcgcaac ccaacgcaag gagcgcaagc atgacaactc
     9901 aggtccgcaa aaacgtcatg gatatgttta tcgatggcgc gcgccgtggc tttactatcg
     9961 ccacgaccaa cctgctgcca aacgtggtga tggcgtttgt catcattcag gcgctgaaaa
    10021 ttaccggcct gctcgactgg gtggggcata tctgtgaacc cgtaatggcg ctgtggggat
    10081 tacccggtga agcggcaacc gtccttttag ccgcattaat gagtatgggg ggcgcagtcg
    10141 gtgttgccgc cagtctggca accgctggcg cattaaccgg tcacgatgtc accgttttac
    10201 tgcccgcgat gtatttaatg ggcaacccgg tgcaaaatgt cggtcgctgc ctggggacag
    10261 ccgaagtgaa tgccaaatat tacccgcata tcattacggt ctgcgtgatt aacgcattgc
    10321 tgtcgatctg ggttatgcag cttattgttt aacaaggagt taccatgatt gattataccg
    10381 cagccggttt taccctgctg cagggagcgc atttgtatgc gccggaagat cggggaattt
    10441 gcgatgtcct cgtcgctaac ggcaaaatta tcgccgttgc cagcaatatc ccttctgaca
    10501 ttgtaccgaa ctgcacggtt gtcgatctca gtgggcagat cctctgccca ggttttattg
    10561 atcaacacgt ccatttgatt ggcggtggcg gcgaagcagg tcccacgacg cgcacgccgg
    10621 aagtggcgct aagtcgcctg acggaagcgg gcgtcacgtc agtggttggt ctgctgggca
    10681 ccgactctat ctctcgccac ccggaatccc tgctcgccaa gacccgtgcg ctcaatgaag
    10741 aaggcatcag cgcctggatg ctgaccggcg cttatcatgt cccttcccgc actattacgg
    10801 gttccgtgga aaaagacgtg gcgattatcg atcgtgtgat tggcgtgaaa tgcgccatct
    10861 ctgatcaccg ttctgccgca ccggacgttt atcacctggc taatatggcg gcagaatccc
    10921 gcgttggcgg tttgctcggc agtaaacctg gcgtcaccgt gttccacatg ggcgacagta
    10981 aaaaggcgtt acagcctatt tatgacctgc tggaaaactg cgatgtgccg atcagcaagc
    11041 tgctgccgac ccacgttaac cgcaacgtac cgttgtttga gcaggcgctg gagttcgcgc
    11101 gcaaaggcgg caccatcgat atcaccagca gcattgacga accggtcgcc cctgccgaag
    11161 gtattgcccg cgccgttcag gcgggtattc cgctggcacg cgtcaccctc agctccgacg
    11221 gcaacggtag ccagccgttc ttcgatgacg aagggaattt aacccatatc ggtgttgcag
    11281 gttttgaaac gttgctggaa accgtgcagg tgctggtcaa agactatgat ttcagtatca
    11341 gcgatgccct gcgcccgctc accagtagcg tagccggttt ccttaacctg agcgggaaag
    11401 gcgaaattct gcctggcaat gacgcagact tactagtcat gacgccagaa ttgcgcattg
    11461 agcaggtata tgctcgcggc aaactgatgg tcaaagacgg caaagcctgc gtgaaaggaa
    11521 cgtttgaaac ggcttaaacg gttgtcagcc gccctaatgg acgtagaatg cccgcaaggg
    11581 cggctgacag agtaaaacgt aatggatgac tgttgtgcgg ttttgcataa tattgaaacc
    11641 aaatggcttt atgattttct gaccctggaa aaatgccgca atttttccca ggcggcagtc
    11701 agtcgtaacg tctcgcaacc ggcattcagc cgccgcatcc gcgcgctgga acaggcgatt
    11761 ggcgttgaat tgtttaaccg ccaggtgacg ccgctgcaac tctcagaaca agggaaaatc
    11821 ttccattcgc agatccgcca tctgttgcaa cagttagaaa gtaaccttgc agagctgcgt
    11881 ggcggcagcg attacgcgca acgtaaaatc aagatagccg ctgcacactc tctttccctc
    11941 ggtctgttac cgtccattat cagccagatg ccgccgctct ttacctgggc gattgaagct
    12001 attgatgtcg atgaagcagt cgataaactg cgtgaagggc aaagtgactg tattttttcc
    12061 tttcacgacg aagatttgct ggaagcaccg tttgaccaca ttcgcttatt tgaatctcaa
    12121 ttgttccccg tttgcgccag tgacgaatac ggagaagcaa tttttaacct cgcgcagcca
    12181 cactttccgt tactgaatta cagccgcaac tcctacatgg ggcgattgat taatcgcacc
    12241 ctgacgcgcc acagcgagtt aagtttcagc accttttttg tctcttcgat gagcgagcta
    12301 ttaaagcagg ttgccctcga cggctgtggg attgcctggc tgccggagta tgccatccaa
    12361 caagaaattc gcagcgggca actcgttgtg ctgaatcggg acgaactggt gatcccgatt
    12421 caggcctacg cataccgtat gaatacccgc atgaatccag ttgccgaacg cttctggcgt
    12481 gaactgcgcg agctggagat tgtgcttagc tgacattctc aagcgtcgca ctgcgccaac
    12541 cgccattatc ccagaccaga tcaaacgtta gcggttcatc gtcgtggtac agcattatct
    12601 caaggctgat cgccagagtg tggcagtacg cttctttcaa attaacctgc aacgccgcaa
    12661 tccgtggctc atgaaataac agtgcagaac gcagctgacg gcaataccag ctctggagat
    12721 gtttgtcgct cgggttatgc acttgccact cgggcatgcc tgaaacaagt aatgacggta
    12781 atgccgaatg aggagaatta aaaagagtga ggagatcgct gcataccgat ttacgcagca
    12841 atgacgtttt attgcctgaa atttcaggta aaacagcctg aagtgattgg cgcatcattt
    12901 tgcgcactcc tgacgtttag caacatatgc ggcttgccct gaacaccggg caccactgta
    12961 ttgatgctca ttttccatag ccattccctt ttgttcatta catccatgtc agtctgagac
    13021 aggcctgaat cctgtcagca aagtataaaa ccttacttgc ctatgaatat ctactgactt
    13081 ttcaggaaaa aagtcatgat ttgataaaaa tcatcaaact caaaaaaaaa ccgctagtat
    13141 attctgaata ttccgaatag ttacgtagat gaaaatactt gtcaccgccg ctacttaatt
    13201 ccggtgggaa attatttatt tccgcataat cagccatgta ttatttgaaa caattagttt
    13261 gtaaataata taaattgata acatatcaaa tacatcaaaa ataccattca taggcattat
    13321 taatatagac atcaatatag caacatcaaa ttccaattag taataagata tgctttttaa
    13381 ttgcatgaaa ataatttcaa atgagcgttt tttgatactt tagagtgttt cctacccttt
    13441 aatatcaccg tgtagagttg atatcactac aacagaaaca tgcatgtcat ttttttactt
    13501 cttttttact acagaaaaat ttatctattt ttctaaacat cggtgaaata ctcataaaag
    13561 gtaactatta tgtctatgcc attaagcaat gcccttcaga gtcaaattat tacagataat
    13621 cacttccttc atcatccaaa agtcgacaat aagttaacac gtgaatatga atatacacgc
    13681 atggatacgg aaaatatcta tcttctgcct cttactcgtg gaaataacca taattacgat
    13741 ggaaaaagcg ttgtcgaaat tagaaaactt aatattggca aacagtcctg gccatttaat
    13801 tatgcgacag atacatgcag agaattcaat ggtattacaa caacaggacg tatgctctat
    13861 cgaaacttga aaatcacctc agctttagac gaaatatatg gtggcatatg taaaaaggcg
    13921 catgctgcta cagagttagc agaaggttta cggctaaatt tatttatgaa gagccctttc
    13981 gatcctgttg aggactatac agttcatgaa ataacattag gccctggtta caatgttcct
    14041 ggttatgccg gaaccacgat aggatatatt tcaacccttc cagcttctca ggcaaaaaga
    14101 tggaccaatg agcagccaag aattgatatc tatattgatc agataataac tgtctcaggg
    14161 gtggcaaatt cttccggatt cgcccttgcc gcattactta atgctaatat tggaatggga
    14221 aatgacccaa taattggtat agaagcctat cctggtaccg cggagatcca tgcaaaaatg
    14281 ggatataacg ttatccccgg tgatgaagat gcgccactca aacgcatgac tctgcaaccg
    14341 tcatctcttc cagaactgtt tgaattaaaa aatggtgaat ggaattatat tggcaaataa
    14401 ccactgagaa gaatgagtac taacattcag gttatataga tatttaaaca ataccctgca
    14461 atttacaaag taatactcat tgcgacttct taatttaaga aagcgcaagg aacgtttacc
    14521 cttgcgctta tcataatcag tcaggcgtcg actttatcca gcggccatga atcaaacaga
    14581 tagccgtcaa aataaatatc gtcaacgttc gagaattcca gcagacgttg cttaacgttt
    14641 tccagatgct gccacattgc cagcttcgcc gctcgggcat cttttttgat taacgcggca
    14701 aggatctgtt tgtgatcgcc caaccactct ttgcgataca ggctgtcatc cagatggctg
    14761 tgcaactgga tccacattgg attgttttcc cgccactgcc aggactgacg gaataactcc
    14821 accagcatgc tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt
    14881 tcgctgctac ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc
    14941 attttgacga tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca
    15001 agaagctgtc gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc
    15061 ggactgtctg tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc
    15121 acttccacca gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg
    15181 acatcaagca tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc
    15241 gtctttatga tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag
    15301 gtggcagatt tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc
    15361 ggcgtgaacg ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac
    15421 tataccatta gcactggaag ttagcacgta caggtgggca aaaaaacgaa aactggtcaa
    15481 ccaaatatca gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc
    15541 cacacactcg cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac
    15601 aaagtcggca ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt
    15661 cacgcggtct gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc
    15721 gaccacgtca atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc
    15781 cacgcccagc gccaggtgac gccagctgcc gccattttgc aggtgcagac gcaccgggtc
    15841 cagcagacgc tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg
    15901 cagagacggg ttgctgaaac gctagatcag cagcgtcgca taggccttca ggtccgtacc
    15961 ctccggcata gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg
    16021 ataatccggg ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta
    16081 tgccaggaaa gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac
    16141 gtctgcaacg aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc
    16201 ttcaatcacc cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag
    16261 ctggtcagca atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat
    16321 ggtgcacggg aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg
    16381 agccagcccc agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga
    16441 catcaccgta aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta
    16501 accaatcgcg gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt
    16561 gagatccagt tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga
    16621 gacaatcgcc gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc
    16681 cggatgcagc gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt
    16741 ttccgctacg gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt
    16801 gcctggcatc aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg
    16861 atgggtatac agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg
    16921 tgattccaga cgagaatgat cccatgacgg acgggcaacc ggcagattgc tgtcaacaat
    16981 agtagtcatc gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc
    17041 ggcacggcgc gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc
    17101 agttcgacac cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg
    17161 ttggttttct tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc
    17221 aggtcttctt tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact
    17281 tcgtacatat caacgtcacc gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct
    17341 tcacgcatgg tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata
    17401 tcaaccagat cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc
    17461 gccatgctgt ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc
    17521 ggcaggccga ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact
    17581 tcttcagcaa ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct
    17641 ttatcgatat ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct
    17701 tccgcgcccg gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc
    17761 atagtggcga agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg
    17821 cctggacgtt tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga
    17881 gctttggagc cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc
    17941 atgaagttgt agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga
    18001 tagttagcga tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt
    18061 acgctttcta cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg
    18121 atctcttcta cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca
    18181 gttgcgcccg cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc
    18241 caggtctgtt ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg
    18301 aaccttggag ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc
    18361 ggatgagatg gcgtataagt tctacctttt ggtaagatat atcaacccaa atcctgaaat
    18421 tggttaacca aatcacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag
    18481 gtaatcgatg gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt
    18541 acataacatg tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg
    18601 tgcttaacat tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg
    18661 caggttcaga cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta
    18721 aaagacacgt tgaaaacctg gggtctgctg gaactggtca actccgtggt tgggctgatt
    18781 attagcaagg tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac
    18841 aaagtctaaa aatgtgcccg gacagtccc
//
LOCUS       DAJVUY010000079        18501 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.079, whole genome shotgun sequence.
ACCESSION   DAJVUY010000079 DAJVUY010000000
VERSION     DAJVUY010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18501
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.079"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..889
                     /locus_tag="OQQ72_002397"
     CDS             <1..889
                     /locus_tag="OQQ72_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2012091.1"
                     /translation="FNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFITI
                     GVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTMW
                     GMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMTAIPFLFGAAGMLVNGYVTD
                     WLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTSC
                     RGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTAA
                     GALAYIFLVRQPINDPRKD"
     gene            complement(938..2593)
                     /gene="tsr"
                     /locus_tag="OQQ72_002398"
     CDS             complement(938..2593)
                     /gene="tsr"
                     /locus_tag="OQQ72_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HCS2012092.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(2712..3158)
                     /gene="hpaR"
                     /locus_tag="OQQ72_002399"
     CDS             complement(2712..3158)
                     /gene="hpaR"
                     /locus_tag="OQQ72_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HCS2012093.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            3430..4719
                     /locus_tag="OQQ72_002400"
     CDS             3430..4719
                     /locus_tag="OQQ72_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HCS2012094.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENCYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            4716..6182
                     /gene="hpaE"
                     /locus_tag="OQQ72_002401"
     CDS             4716..6182
                     /gene="hpaE"
                     /locus_tag="OQQ72_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HCS2012095.1"
                     /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA
                     VAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP
                     RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP
                     CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRDHDVR
                     AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE
                     RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVGALISQQHWEKVSGYIR
                     LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP
                     FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG
                     VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV"
     gene            6184..7035
                     /gene="hpaD"
                     /locus_tag="OQQ72_002402"
     CDS             6184..7035
                     /gene="hpaD"
                     /locus_tag="OQQ72_002402"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HCS2012096.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            7045..7425
                     /locus_tag="OQQ72_002403"
     CDS             7045..7425
                     /locus_tag="OQQ72_002403"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HCS2012097.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            7536..8339
                     /gene="hpaH"
                     /locus_tag="OQQ72_002404"
     CDS             7536..8339
                     /gene="hpaH"
                     /locus_tag="OQQ72_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HCS2012098.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            8350..9138
                     /gene="hpaI"
                     /locus_tag="OQQ72_002405"
     CDS             8350..9138
                     /gene="hpaI"
                     /locus_tag="OQQ72_002405"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HCS2012099.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLSDGE
                     HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            9313..10689
                     /gene="hpaX"
                     /locus_tag="OQQ72_002406"
     CDS             9313..10689
                     /gene="hpaX"
                     /locus_tag="OQQ72_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HCS2012100.1"
                     /translation="MSDTSPAIPESIDPANQHKALTAGQQAVIKKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGRDLGLSATMFGLATTLFYAAYVIFGIPSNIMLSIVGARRW
                     IATIMVLWGIASTATMFATGPTSLYVLRILVGITEAGFLPGILLYLTFWFPAYFRARA
                     NALFMVAMPVTTALGSIVSGYILSLDGVMALKGWQWLFLLEGFPSVLLGVMVWFWLDD
                     SPDKAKWLTKEDKKCLQEMMDNDRLTLVQPEGAISHHAMQQRSMWREIFTPVVMMYTL
                     AYFCLTNTLSAISIWTPQILQSFNQGSSNITIGLLAAVPQICTILGMVYWSRHSDRRQ
                     ERRHHTALPYLFAAAGWLLASATDHNMIQMLGIIMASTGSFSAMAIFWTTPDQSISLR
                     ARAIGIAVINATGNIGSALSPFMIGWLKDLTGSFNSGLWFVAALLVIGAGIIWAIPMQ
                     SSRPRATP"
     gene            10699..11585
                     /gene="hpaA"
                     /locus_tag="OQQ72_002407"
                     /pseudo
     CDS             10699..11585
                     /gene="hpaA"
                     /locus_tag="OQQ72_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            11836..13398
                     /gene="hpaB"
                     /locus_tag="OQQ72_002408"
     CDS             11836..13398
                     /gene="hpaB"
                     /locus_tag="OQQ72_002408"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HCS2012101.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSANDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            13416..13928
                     /locus_tag="OQQ72_002409"
     CDS             13416..13928
                     /locus_tag="OQQ72_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HCS2012102.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     RQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            14321..16471
                     /gene="btsT"
                     /locus_tag="OQQ72_002410"
     CDS             14321..16471
                     /gene="btsT"
                     /locus_tag="OQQ72_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HCS2012103.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            16602..16805
                     /locus_tag="OQQ72_002411"
     CDS             16602..16805
                     /locus_tag="OQQ72_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS2012104.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            16816..17772
                     /gene="yjiA"
                     /locus_tag="OQQ72_002412"
     CDS             16816..17772
                     /gene="yjiA"
                     /locus_tag="OQQ72_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HCS2012105.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DVAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(17874..>18501)
                     /locus_tag="OQQ72_002413"
     CDS             complement(17874..>18501)
                     /locus_tag="OQQ72_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HCS2012106.1"
                     /translation="PGSAILNVWLTSMLKRTVVAAVPMPFDKWYSASGYETTQDGPTG
                     SLNISVGAKILYEAVQGDKSPIPQAVDLFAGKPQQEVVLAALEDTWETLSKRYGNNVS
                     NWKTPAMALTFRANNFFDVPQAAAEETRHQAEYQNRGTENDMIVFSPTTSDRPVLAWD
                     VVAPGQSGFIAPDGTVDQHYEDQLKMYENFGRKSLWLTKQDVEAHKES"
BASE COUNT         4226 a         5123 c         4938 g         4214 t
ORIGIN      
        1 gttcaacatc aaagagcgcg gacgcccgat gggcttcttc aacgcagctt ctaccattgg
       61 cgttgccgta agcccaccga ttctggcggc gatgatgctg gtgatgggct ggcgcgggat
      121 gtttattacc attggtgtac tggggatttt tctcgccatc ggctggtata tgctctatcg
      181 caaccgcgag cacgtagaac tgactgccgt tgagcaagct tatctcaatg caggtagcgt
      241 caatgcccgc cgagatccgc tcagttttgc cgaatggcgc agcctgttcc gtaaccgtac
      301 aatgtgggga atgatgctcg gattcagtgg catcaactac actgcgtggc tgtatctggc
      361 ctggcttcct ggttacctgc aaacagccta taacctggat ttaaaaagca cagggttgat
      421 gacggctatc cctttcctgt ttggggctgc cgggatgctg gtcaacggtt acgttaccga
      481 ctggctggtc aaagggggaa tggctccgat taaaagccgt aagatctgca ttattgccgg
      541 gatgttctgt tctgccgcct ttacgctgat agtaccacaa gcgacaacat ccatgacggc
      601 ggttctgctg attggcatgg cactgttctg tattcacttt gccggaacat cctgccgggg
      661 cttgatccac gtcgcagttg cttctcgcat gactgcgtcg gtgggcagta tccagaactt
      721 tgccagcttc atctgcgcct cttttgcgcc gatcattact ggttttattg ttgataccac
      781 ccactcattc cgtctggcac taatcatctg cggttgcgtc accgcagcgg gggcactggc
      841 gtacatcttc ctggttcgtc agccgatcaa cgacccacgt aaagattaat ctccttatgc
      901 ccgataacat tttgcttatc gggcattttc atggcgatta aaatgtttcc cagttctcct
      961 cgctatctgc cacggccatt ttacgcggcg cagctggcgt cacggttttt accacagccg
     1021 atgtttcacg ctgctgttgc tgaatccgga acactgccac tgcttcggtc aggcgactgg
     1081 cctgctcttc cagcgcggcg gcggcagcgg cagactcttc caccagcgcg gcgttctgtt
     1141 gagttacccg gtccatctca gcaaccgcta agccaacctg atcgatacca cggctctgct
     1201 catcagaagc agaagcaatt tcgcccataa tgtccgtcac gcgggtcacg gcgctgacaa
     1261 tctccgccat tgtttccccg gcgctttcga ccagcgtaga gccaacatcc actttcccca
     1321 ccgagtcttc aatcaggctt ttaatttcac gagccgcctg ggcgctgcgc tgggccagat
     1381 tacgcacttc tcccgcgacc accgcaaaac cgcgcccttg ctcacccgca cgcgcagcct
     1441 caaccgccgc gttcaaagcc agaatattgg tctggaaggc aatgccgtca attacgctga
     1501 taatatcggc gattttctgc gaactggtgg agatatcgcg catagtctgc accacgttat
     1561 ctaccacttt gccgccgcgt tgcgccgttt cagaagcact taacgccaga tggctggcct
     1621 ggcgcgcatt ttcggcgttc tgcttcaccg ttgcggtcag ttgctccatg ctggctgccg
     1681 tctcttccag cgaagcggcc tgttgctcgg tgcgcgaaga gagatcgtta ttgccggtgg
     1741 cgatttcgct ggcaccgcta tagatggcat tggccccgtt gcgcacatca ccgacggtac
     1801 gcatcagctc tccctgcata tggcgcaaac tctctgccag ttgccccatc tcattagagc
     1861 catccacctc aatcggtttc accagatcgc cgcctgcaat atgacgaatg ctgtcaatca
     1921 ggcgattcat tggcgctacc agcgaggctt taataccgaa ccagacggcg aagatgaccg
     1981 ccagtacgac gatcatcacg cccaccagaa tccacatcgc ctggctgtag gaggcattgt
     2041 tatcgctgac ggcgatatca tagagccgat cgttttgctc catgtaagcc acatactgct
     2101 tctcgaaacc gtcctgatat ccctgggtcg gctgatcaaa gaactcgttg attttgcctg
     2161 cacctaacag ttggatcagc tccgccagcg cattgtgata aatatcgtaa ttacgtttga
     2221 tctctgccgc tgcggcggtg ctctgacgcg ggtcacgcgg caacgcttcg taatccgccc
     2281 agtttttttc cgcctgtttc agcgaaatac tggcactctg catcagctca gcaacggttg
     2341 aaccgctacc aatattattc tgatccatca tgtagcggat acccgcgcgg ttgagggtgt
     2401 tacgcgtctg caacaacgcg acccagctgc cattcagcgt ggattgctgc tggcgaatgg
     2461 tttgtaaaac agtgaaattt tctttgtcat tctttaaggc attaaagaac agaccgcctg
     2521 atgtcagttg taaaaggcca aaaacggcca aaaccagcag taagctggtc acgatcttga
     2581 tacgttttaa catggtttct ctttcctgtg gaccgatgca agattttcgg cttggaaagc
     2641 aaaaacttta tgaaaaggtg taacccgcca tccatggaaa aaccaggcgc tggttatcag
     2701 atactaaaaa gttattcatt atcgcccggg atggcttctt gtcgggaatt gcccagagca
     2761 ataaattcct ctaacagatg ggttaactgt tgcattttct cggcagtaaa ctgagcttca
     2821 atctgccgat aggcttcttc aatctgtgtc tgagcgcggt tatacagcgc ctgcccctct
     2881 ttggttagcg agatatagag cttccgctga tcattgatcg gctttaatcg caacactaaa
     2941 ccgtcgcgtt ccatccgcgt gagaatcccg gtcaggcttg ggcgcaaaat gcaggcgcga
     3001 tacgccagat cgtgaaaatc cattgatggg ctttccgcca gaatacgcac gatgcgccac
     3061 tgttgctcag tcaaattatg ccgtttaacg attgggcgaa aataactcat cgccgcttct
     3121 cgcgcctgga gcaacgcaat ggttagtgag tcgtgcatta tctttcccct gaaaaattca
     3181 aaatcattaa tatagaaaca gttaatcgtc acgttaccgg gactgcgctg cccctgcaat
     3241 tcctgatttt atcaaaattg atgatatttt attaacttac tgatatttaa tattttatta
     3301 tctttaaatg taaatagttt gttaattaga tcacatttac atcacttact tttgccaaac
     3361 tacgcaatcg ggaataaaag caatcattaa catattaatg attaagataa tcgaatccga
     3421 ggagtggtaa tgaaaggcac tatcttcgcc gtagcgttga accatcgcag ccaacttgat
     3481 gcatggcagg aagcgttcca gcaatccccc tacaaagccc cgcctaaaac tgcggtctgg
     3541 tttattaaac cgcgcaatac ggtgattggt tgcggtgaac cgattccctt tccacagggt
     3601 gaaaaggtac tgagcggtgc gactgttgcg ctgattgtgg gaaaaacggc gacgaaagta
     3661 cgtgaagaag atgcggcaga gtacatcgcc ggatatgcgc tggctaacga cgtcagcctg
     3721 ccggaagaga gcttttaccg cccggcaatc aaagcaaaat gtcgtgatgg attctgcccc
     3781 attggcgaaa ccgtggctct cagcaatgtc gataatctga ccatctatac cgagatcaac
     3841 gggcgtcctg ccgatcactg gaataccgcc gatttacaac gtaacgccgc gcagttgctg
     3901 agcgccctga gcgaatttgc cacgctgaat ccaggcgacg ccattctgct cggcacgcca
     3961 caggcgcgcg tggaaataca gccaggcgat cgcgttcgtg ttctcgcaga aggtttcccg
     4021 ccgctggaaa atccggtagt ggacgaacgt gaagtgacca cgcgcaagag cttcccaacg
     4081 cagccacacc cgcacggcac gctgtttgcc ctcggcctga actacgccga ccacgccagc
     4141 gaactggaat ttaagccacc ggaagaaccg ctggtattcc tgaaagcgcc aaataccctc
     4201 actggcgata accagacctc cgtgcgtcca aacaatattg aatacatgca ctatgaagcg
     4261 gagctggtgg tagttattgg caaacaggcg cgtaacgtca gcgaagccga tgccatggat
     4321 tatgtcgcgg gctacaccgt gtgtaacgac tacgccattc gtgactatct ggaaaactgc
     4381 taccgcccta acctgcgggt aaaaagccgc gacggactga cgccgatgct ttcaaccatc
     4441 gtgccgaaag aggcgatccc ggacccgcat aatctgaccc ttcgcacctt cgtcaacggc
     4501 gagttacgcc agcaaggcac caccgccgat ctgatcttca gcgtgccctt cctgatcgcc
     4561 tacttaagtg aatttatgac cctgaatccg ggcgacatga tcgccaccgg cacacccaaa
     4621 ggcttatctg acgtggtgcc tggcgatgaa gtagtggtgg aagtagaagg cgtgggccgc
     4681 ctggtgaacc gaattgtgag tgaggataca gcgaaatgaa aaaagtaaat cattggatca
     4741 acggcaaaaa tgttgcaggt aacgactact tccagaccac caatccggca acgggtgaag
     4801 tgctggcgga tgtggcctct ggcggtgaag cggagatcaa tcaggcggta gcggcagcga
     4861 aagaggcgtt cccgaaatgg gccaatctgc cgatgaaaga gcgtgcgcgc ctgatgcgcc
     4921 gtctgggcga tctgatcgac cagaacgtgc cagagatcgc cgcgatggaa accgcggaca
     4981 ccggcctgcc gatccatcag accaaaaatg tgttgatccc acgcgcttcc cacaactttg
     5041 aatttttcgc ggaagtctgc cagcagatga acggcaagac ctatccggtt gacgacaaga
     5101 tgctcaacta cacgctggtg cagccggtgg gcgtttgtgc gctggtatcg ccgtggaacg
     5161 taccgtttat gaccgccaca tggaaggtcg cgccgtgtct ggcgctgggc aataccgcgg
     5221 tactgaaaat gtcggaactc tccccgctga ccgctgaccg cctgggtgag ctggcgctgg
     5281 aagccggtat tccggcaggc gtgctgaacg tggtacaggg ctacggcgca accgcagggg
     5341 atgcgctggt tcgtgatcat gacgtacgtg ccgtgtcgtt caccggcggt acggccaccg
     5401 ggcgcaacat catgaaaaac gccgggctga aaaaatactc catggaactg ggcggtaaat
     5461 cgccggtgct gatttttgaa gatgccgata ttgaacgcgc gctggacgcc gccctgttca
     5521 ccatcttctc gatcaacggc gaacgctgca ccgccggttc acgcatcttt attcagcaaa
     5581 gcatctaccc ggaattcgtt aaacgctttg ccgaacgcgc caaccgtctg cgcgtgggcg
     5641 atccgaacga tccgaatacc caggttggcg cgcttatcag ccagcagcac tgggaaaaag
     5701 tctccggcta tatccgtctc ggcattgaag aaggcgccac cctgctggcg ggcggcccgg
     5761 ataaaccgtc tgacctgcct gcacacctga aaggcggcaa cttcctgcgc ccaacggtgc
     5821 tggcagacgt tgataaccgt atgcgagtcg cccaagaaga gattttcggg ccggtcgcct
     5881 gcctgctgcc gtttaaagac gaagctgaag gcttacgcct ggcaaacgac gtggagtacg
     5941 gcctcgcgtc gtacatctgg acacaggatg tcagcaaagt gttacgcctg gcgcgtggca
     6001 ttgaagctgg catggtgttc gtcaacaccc agaacgtgcg tgacctgcgc cagccatttg
     6061 gcggcgtaaa agcctccggc accgggcgtg aaggcggtga gtacagcttc gaagtgttcg
     6121 cggaaatgaa gaacgtctgc atttccatgg gcgaccatcc aattccgaaa tggggagtct
     6181 gatatgggta agttagcgtt agccgccaag atcacgcacg taccgtcgat gtatctctct
     6241 gaactgccag ggaaaaacca cggttgccgc cagggcgcga tcgacgggca taaagagatc
     6301 agcaagcgtt gccgggaaat gggcgtcgat accattatcg ttttcgatac ccactggctg
     6361 gtcaacagtg cttatcacat caactgtgca gaccattttg aaggcgtcta caccagcaac
     6421 gagctgccgc attttatccg cgatatgacc tacaactacg agggcaaccc ggagttgggg
     6481 cagcttattg ccgatgaagc cttaaagctc ggcgtgcggg caaaagcgca caacattccc
     6541 agcctgaaac tggaatacgg cacgctggtg ccgatgcgct acatgaatga agacaagcac
     6601 ttcaaagtgg tctccatttc ggctttctgc acggttcacg attttgccga cagccgcaag
     6661 ctgggcgaag cgattctgaa agcgatcgaa cagtacgacg gcaccgtggc ggtccttgcc
     6721 agcggttcgt tatcgcaccg ctttattgac gatcagcgtg cagaagaagg gatgaacagc
     6781 tacacccgcg agttcgaccg ccagatggac gagcgcgtgg tgaagttgtg gcgcgaaggc
     6841 cagttcaaag agttctgcaa tatgctgccg gagtacgccg actactgcta cggcgaaggc
     6901 aatatgcacg acacggtgat gctgctgggg atgctcggct gggataaata cgacggcaag
     6961 gtggagttta tcaccgagct attcccaagc tctggcaccg gtcaggttaa cgctgttttc
     7021 ccgcttcccg cgtaaggacg ttttatgccg cactttatcg ttgaatgcag tgacaacatc
     7081 cgcgaagaag ccgacctgcc ggggttgttc gccaaagtga atccgacgct ggcagccacg
     7141 ggtatttttc cgctggcggg tattcgcagc cgcgtgcatt gggtcgatac ctggcagatg
     7201 gccgacgggc agcgtgatta tgccttcgtg catatgacgt tgaaaatcgg cgcaggtcgc
     7261 agcctggaaa gccgtcagca ggcgggtgaa atgctgtttg aactgattaa aacgcacttc
     7321 gccgccctga tggagagccg cctgctggcg ttgtcgtttg agattgaaga gctgcatccg
     7381 acgctgaatt ttaaacaaaa caacgtgcac gcattgttta agtagcgcgc agattgcccg
     7441 gtggcgctgc gcttaccggg cctacaaaac cccaaaccgt acaccgtagg ccggataagg
     7501 cgcagccgca tccggcaatg ccacaggata tcgctatgtt cgataaacac acccacaccc
     7561 tgatcgccca gcgtctggat caggcagaaa aacagcgcga acagatccgc gcgatctcgc
     7621 tggattaccc agagatcacc atcgaagacg cttacgcggt gcagcgcgaa tgggttcgcc
     7681 tgaaaatcgc cgaaggccgt acgctgaaag gccacaaaat cggtctgacc tcaaaagcaa
     7741 tgcaggccag ctcgcagatc agcgaaccag attacggtgc cctgctggat gacatgttct
     7801 tccacgatgg cagcgatatc ccgaccgatc gctttatcgt gccgcgcatt gaagtggagc
     7861 tggctttcgt gctggcaaaa ccgctgcgtg ggccaaactg cacgctgttc gacgtctaca
     7921 acgccacgga ctacgtgatc ccggcgctgg agctgatcga cgctcgctgc cacaacatcg
     7981 atccggaaac ccagcgcccg cgcaaagtgt tcgacaccat ttctgataac gccgccaacg
     8041 ccggggtgat cctcggtggt cgtccgatca aaccagacga actggatctg cgttggatct
     8101 ccgccctgat gtatcgcaat ggcgtgattg aagaaaccgg cgtcgccgct ggcgtgctga
     8161 atcatccggc aaacggcgtg gcctggctgg cgaacaaact cgcaccgtat gacgtacaac
     8221 tggaagccgg gcaaatcatt ctcggtggtt cgttcacccg cccggttccg gcgcgtaagg
     8281 gcgacacctt ccacgtcgat tacggcaaca tgggttccat tagctgccgc tttgtttaag
     8341 gagagaacga tggaaaacag ctttaaagcg gcgctgaaag caggccgtcc gcagatcgga
     8401 ttatggctgg ggctgagtag cagctacagc gcagagttac tggccggagc aggattcgac
     8461 tggttgttga gcgacggtga gcacgcgccg aataacgtgc aaaccgtgct cacccagcta
     8521 caggcgattg cgccctaccc cagccagccg gtagtacgtc cgtcgtggaa cgatccggtg
     8581 caaatcaaac aactgctgga cgtcggcaca caaaccttgc tggtgccgat ggtacaaaac
     8641 gctgacgaag cccgtgaagc ggtacgcgcc acccgttatc cccccgccgg tattcgcggt
     8701 gtgggcagtg cgctggcccg cgcctcgcgc tggaatcgta ttcctgatta cctgcaaaaa
     8761 gccaacgatc aaatgtgcgt gctggtgcag atcgaaacgc gtgaggcaat gaagaactta
     8821 ccgcagattc tggacgtgga aggcgtcgac ggcgtgttta tcggcccggc ggatctgagc
     8881 gccgatatgg gttatgccgg taatccgcag cacccggaag tacaggccgc cattgagcag
     8941 gcgatcgtgc agatccgtga atcgggcaaa gcgccgggga tcctgatcgc caatgagcaa
     9001 ctggcaaaac gctatctgga actgggcgcg ctgtttgtcg ccgtcggcgt tgacaccacc
     9061 ctgctcgccc gcgccgctga agcgctggca gcacggtttg gtgcgcaggc caccgccgtg
     9121 aagcccggcg tgtattaatg ccggatgcgc tgcacttatc cggcctacac tcgcaccaaa
     9181 ccgtaggccg gataaggcgt ttacgccgca tccggcaaaa agccgtacca aatcgcggac
     9241 cggataaggc gttacgccgc atccgccata aaccttgtcg taccctacaa aaatcccatt
     9301 agaggaagaa aaatgagcga cacctcacct gccataccgg agagtatcga tccggcgaat
     9361 cagcataaag cgctgactgc cggacaacag gcggttatta agaagctatt tcgccgcctg
     9421 atcgtctttc tgttcgtgct gtttatcttc tcgttccttg atcgcatcaa catcggcttt
     9481 gccggactca cgatgggacg cgacctcggt ctgagcgcca ccatgtttgg cctcgctacc
     9541 accctgttct atgccgctta tgtcatcttc ggcattccca gcaacattat gctgagtatt
     9601 gtcggtgcgc ggcgctggat cgccaccatc atggtgctct ggggcatcgc ctctactgcc
     9661 accatgtttg ccactggccc caccagcttg tacgtactgc gtatactggt tggcattacc
     9721 gaagccggct ttctgcctgg tattctgctg tatttaacct tctggtttcc ggcctatttc
     9781 cgcgcccgtg ccaacgcctt gtttatggta gcaatgccgg taacgacagc gttgggctcg
     9841 atcgtttccg gctacatttt gtcgctggat ggcgtcatgg cattaaaagg ctggcagtgg
     9901 ctgtttttgc tggaaggctt cccgtcggta ttactcggcg tcatggtgtg gttctggctt
     9961 gatgactcac cggacaaagc taagtggctg acgaaagaag acaaaaaatg cctgcaagag
    10021 atgatggata acgatcgtct gacgctggtt cagccagagg gagccatcag ccaccacgcc
    10081 atgcaacaac gcagtatgtg gcgggagatc ttcactccgg tggtgatgat gtataccctg
    10141 gcgtatttct gcctgaccaa cacacttagt gcgatcagca tctggacacc gcagatcctg
    10201 caaagtttta atcagggcag cagtaatatc accatcggcc tgctggccgc cgtaccgcag
    10261 atttgtacca ttctcgggat ggtctactgg agccgtcact cagatcgccg ccaggaacga
    10321 aggcatcaca ccgcccttcc ttatttgttc gctgccgcag gttggttact ggcttcggca
    10381 actgatcaca acatgatcca gatgctgggg atcattatgg cttcgaccgg atcattcagc
    10441 gcaatggcga ttttctggac aacaccggat cagtccatca gcctgcgggc acgagcgatc
    10501 ggtattgcgg tgatcaacgc cactggcaac attggttcag cgttaagtcc gtttatgatc
    10561 ggctggttga aagatttgac cggcagcttt aacagtggat tgtggtttgt tgccgcgctg
    10621 ctggtgattg gtgcggggat tatctgggcg attccaatgc agtcctcccg tccgcgagcg
    10681 accccgtaag gaacgacgat gtgtgaccgt cagattgcca atattgatat cagcaaagag
    10741 tacgatgaaa gcctgggcac ggacgatgtg cattatcagt cgttcgcccg catggcggca
    10801 ttttttggcc gccatatgct gccacatcgc cacgaacagt actttcagat gcatttcctc
    10861 aatagcggac agattgagct acagcttgac gatcatcgct actcggtgga agcgcccctg
    10921 tttgtcctga cgccgccgtc agtacctcat gcgtttatta cggagtctga cgccgacggt
    10981 catgtgttga cggtacggga agatctgatc tggcccctgc tggaagttct ttatccgggc
    11041 actcgggaaa ccttcggcct gccgggggcc tgtcactggc agataaaccc gacgaactgg
    11101 cggcgctgga acactattgg caactgatag agcgggaatc ggtggaacaa ctgcctggac
    11161 gggaacacac cctgacgtta ctggcacagg cagtgttcac cctactgctg cgtaacgcaa
    11221 aactcgacga ccatgccgcc agcgggatgc gcggagaatt aaaactgttc cagcgtttta
    11281 atatgctgat tgaaagccat tttcatcagc actggacagt accggattac gctaacgaac
    11341 tgcatatcac cgaatcacga ctcacggaca tctgccgtcg ctttgccaac cgtccgccaa
    11401 aacggttgat tttcgacagg cagctgcgag aagccaagcg gctgctgctg ttttctgata
    11461 acgccgtgaa caatattgcc tggcaactcg gttttaagga tccggcttat tttgcgcgct
    11521 tttttaatcg cttagtcggt tgctcgccca gtgcttatcg cgccaaaaaa gtacctgtga
    11581 cgtgaaaatc ccttagcctt aacgggaaac caggcaccac ctgctattcc cctttctccg
    11641 cctagagcaa ggggatttag taacgtcaaa aatcgctaaa agcgacctcg atcacaaaac
    11701 cgtacccgac ctgaaaagta ccagccattg tcccaaaagt ctcttcccgt aatcgcccct
    11761 gcaagcttta attgaataac aaaaacaaca cacaaaatta acaatcgtat tccgattaat
    11821 actgtagagg tcgacatgaa accagaagat ttccgcgcca gtacccaacg tccgttcacc
    11881 ggggaagagt atctgaaaag cctgcaggat ggtcgcgaga tctatatcta tggcgagcga
    11941 gtgaaagacg tcactactca tccggcattt cgtaatgcgg cagcgtctgt tgcccaactg
    12001 tacgacgcgc tacacaaacc ggagatgcag gactctctgt gctggaacac cgacaccggc
    12061 agcggcggct atacccataa attcttccgc gtggcgaaaa gtgccaacga cctgcgccag
    12121 caacgcgatg ccatcgctga gtggtcacgc ctgagctatg gctggatggg ccgtacccca
    12181 gactacaaag ctgctttcgg ttgcgcactg ggcgcgaatc cgggctttta cggtcagttc
    12241 gagcagaacg cccgtaactg gtacacccgt attcaggaaa ctggcctcta ctttaaccac
    12301 gcgattgtta acccaccgat cgatcgtcat ttgccgaccg ataaagtaaa agacgtttac
    12361 atcaagctgg aaaaagagac tgacgccggg attatcgtca gcggtgcgaa agtggttgcc
    12421 accaactcgg cgctgactca ctacaacatg attggcttcg gctcggcaca agtgatgggc
    12481 gaaaacccgg acttcgcact gatgttcgtt gcgccaatgg atgccgatgg cgtaaaatta
    12541 atctctcgcg cctcttatga gatggtcgcg ggtgctaccg gctcgccata cgactacccg
    12601 ctctccagcc gcttcgatga gaacgatgcg attctggtga tggataacgt gctgatccca
    12661 tgggaaaacg tactgatcta ccgcgatttc gatcgctgcc gtcgctggac aatggaaggc
    12721 ggttttgccc gtatgtatcc gctgcaagcc tgtgtgcgcc tggcagtgaa attagacttc
    12781 attacagcac tgctgaaaaa atcactcgaa tgtaccggca ccctggagtt ccgtggtgta
    12841 caggccgatc tcggtgaagt ggtggcgtgg cgcaacacct tctgggcatt gagtgactcg
    12901 atgtgttctg aagcgacgcc gtgggtcaac ggggcttatt taccggatca tgccgcactg
    12961 caaacctatc gcgtactggc accaatggcc tacgcgaaga tcaaaaacat tatcgaacgc
    13021 aacgttacca gtggcctgat ctatctccct tccagtgccc gtgacctgaa caatccgcag
    13081 atcgaccagt atctggcgaa gtatgtgcgc ggttcgaatg gtatggatca cgtccagcac
    13141 atcaagatcc tcaaactgat gtgggacgcc attggcagcg agtttggtgg tcgccacgaa
    13201 ctgtatgaaa tcaactactc cggtagccag gatgagattc gcctgcagtg tctgcgccag
    13261 gcacaaagct ccggcaatat ggacaagatg atggcgatgg ttgatcgctg cctgtcggaa
    13321 tacgaccaga acggctggac tgtgccgcac ttgcacaaca acgacgatat caacatgctg
    13381 gataagctgc tgaaataacg cagcaggagg ttaagatgca attagatgaa cagcgcctgc
    13441 gctttcgtga cgcgatggcc agcctgtcgg cagcggtaaa tattatcacc accgagggcg
    13501 acgccggaca atgcgggatt acggcaacgg ccgtctgctc ggtcacggat acaccaccat
    13561 cgctgatggt gtgcattaac gccaacagtg cgatgaaccc ggtttttcag ggcaacggta
    13621 agttgtgcgt caacgtcctc aaccatgagc aggaactgat ggcacgccac ttcgcgggca
    13681 tgacaggcat ggcgatggaa gagcgtttta gcctctcatg caggcaaaaa ggtccgctgg
    13741 cgcagccggt gctgaaaggt tcgctggcca gtcttgaagg tgagatccgc gatgtgcagg
    13801 caattggcac acatctggtg tatctggtgg agattaaaaa catcatcctc agtgcagaag
    13861 gtcacggact tatctacttt aaacgccgtt tccatccagt gatgctggaa atggaagctg
    13921 cgatttaagc tccagcccct tcacgtattc gtcgaagggg catttttatt gtgatctcaa
    13981 tcacatatcc acccgatgaa taattcttgc ccaaccgctc accgccattc ctgaccgctt
    14041 acgtccctaa aataaccact cagttattta ccttacttta cgcgcgcgta actctggcaa
    14101 catcactgca ggatagcggt caatttacct cctcaaacgc aacgcaaacc tagaacggct
    14161 tcggcctatg attaacaaat tactctatga attttggttt gcaggaaggc agcaagtgag
    14221 tgaatccccg ggagcttaca acagtaagtg acagaggtga acgaacgcag ctgccgcacc
    14281 tgtaagccaa aagacgacga gtaaaatgcc aggttttact atggatacga aaaaactatt
    14341 caagcacata ccctgggtga ttctcggaat catcggtgca ttctgcctcg cggtagttgc
    14401 attacgtcgg ggggagcacg tcagcgccct gtggatcgtg gtcgcctctg tgtcggtgta
    14461 tctggtggcg tatcgctact acagtctgta catcgcccag aaggtgatga aactcgaccc
    14521 cacgcgcgcg acgcctgcgg ttattaacaa cgacggtctg aactacgttc cgaccaaccg
    14581 ttacgtgttg tttggtcacc acttcgccgc tatcgccggt gccggtccgc tggttggtcc
    14641 ggtgctcgcc gcgcagatgg gctacctgcc tggcacgctg tggctgctgg cgggggtagt
    14701 actggccggt gcggttcagg actttatggt gctgtttatc tcctctcgcc gtaacggcgc
    14761 atctctcggt gagatgatca aagaagagat gggaccagta ccggggacta tcgcgctgtt
    14821 tggctgtttc ttaatcatga tcatcatcct cgccgttctg gcgctgattg tggttaaagc
    14881 cctggccgaa agtccgtggg gtgtcttcac cgtttgctca accgtaccga ttgcgctgtt
    14941 tatgggtatc tacatgcgct ttatccgtcc ggggcgtgta ggtgaagttt ctgttattgg
    15001 tatcgtgctg ctggttgcct ctatctattt cggtggcgtg attgctcacg atccgtactg
    15061 gggtccggca ctgaccttta aagacaccac cattaccttc gcgctgattg gctatgcgtt
    15121 tgtttccgca ctgctgccgg tgtggctgat cctcgcaccg cgcgactatc tggcaacctt
    15181 cctgaaaatc ggcgttatcg tcggcctggc gctgggtatc gtggtactga acccggaact
    15241 gaaaatgcct gcaatgaccc agtacattga cggtactggc ccgctgtgga aaggcgctct
    15301 gttcccgttc ctgttcatca ccatcgcctg tggtgcggta tctggcttcc acgcgctgat
    15361 ctcttccggt acgacgccga aattgctggc taacgaaacc gacgcgcgtt tcattggcta
    15421 cggcgcaatg ctgatggaat ccttcgtggc gattatggcg ctggttgctg cgtccatcat
    15481 cgaaccgggt ctttacttcg cgatgaatac cccgcctgct ggccttggca tcaccatgcc
    15541 taacctgcat gaaatgggtg gcgagaacgc gccgatcatc atggcgcagc tgaaagacgt
    15601 taccgcacac gcggcggcga ccgtcagctc ctggggcttc gtgatttcgc cagagcagat
    15661 cctgcaaacc gcgaaagaca ttggtgagcc ttctgtcctg aaccgtgcag gtggcgcgcc
    15721 gacgctggcg gtaggtatcg ctcacgtgtt ccacaaagtg ctgccgatgg ctgacatggg
    15781 cttctggtat cacttcggta ttctgttcga agccctgttc atcctgaccg cgctggatgc
    15841 gggtactcgt tctggccgct ttatgctgca agacctgctg ggtaacttca tcccgttcct
    15901 gaaaaaaacc gactctctgg ttgccggtat catcggtact gcgggctgtg tgggtctgtg
    15961 gggctacctg ctgtatcagg gcgtggtcga tccgctgggc ggcgttaaga gcctgtggcc
    16021 gctgttcggt atttccaacc agatgctggc agccgtagcg ctggtactgg gcaccgttgt
    16081 gctgattaag atgaagcgca cccaatacat ctgggtaact gttgttccgg ctgtatggct
    16141 gcttatctgc accacctggg cgctgggtct gaaactgttc agcaccaacc cgcagatgga
    16201 aggcttcttc tacatggcaa gccagtacaa agagaagatt gctaacggta ctgacctgac
    16261 ggcgcagcag attgccaaca tgaaccacat cgttgtgaac aactacacca acgcaggcct
    16321 gagtattctg ttcctgattg tggtgtacag catcatcttc tacggtttca aaacctggct
    16381 tgcggtgcgt aacagcgaca aacgtactga caaagaaact ccgtacgttc caatcccgga
    16441 aggcggcgtg aagatctctt cgcaccacta accggttgcc ggatgcgctg cgcgtatccg
    16501 gcctacaaag tgtctatcgt aggccggata aggcgtttac gccgcatccg gcaaatccct
    16561 agcccggacc ttccgggctt tacgcatatc tggaaggcaa aatgtttggt aacttaggac
    16621 aggcaaaaaa atatctcggc caggcggcga agatgttgat tggcattcca gactacgaca
    16681 actacgtcga gcatatgaag accaaccatc ccgacaagcc gtacatgagc tatgaagaat
    16741 tcttccgcga acgccagaac gcgcgctacg gcggcgatgg taaaggcggt atgcgctgtt
    16801 gttaatggag agagcatgaa cccgattgca gttaccctac tcaccggttt tttaggcgcg
    16861 ggcaaaacca ccctgctgcg ccatattctt aacgaacaac acggctacaa gattgccgtg
    16921 attgaaaacg aattcggcga agtctccgtt gatgatcaac tgattggcga ccgcgccacg
    16981 cagatcaaaa cgctgaccaa cggctgcatc tgctgttcgc gctccaacga gctggaagac
    17041 gcactactcg acctgctgga taatctcgac aagggcaata ttcagttcga ccgtctggtc
    17101 attgaatgca ccggcatggc cgatcccggc ccgattattc agaccttctt ctcccatgag
    17161 attttatgcc agcgctacct gctggacggg gtgattgcgc tggtggatgc ggtacatgcc
    17221 gatgagcaga tgaaccagtt caccatcgcc cagtcccagg ttggctacgc cgaccgtatt
    17281 ctgctgacga aaaccgacgt cgcaggcgaa gcagagaaac tgcgtgaacg cctggcgcgc
    17341 atcaacgccc gcgcaccggt ctacaccgtt acccacggcg atatcgacct gggccttctg
    17401 ttcaacacca acggttttat gctggaagaa aacgtcgtca gcaccaaacc gcgtttccac
    17461 tttatcgcgg acaaacaaaa cgatatttcg tcgattgtgg tggaactgga ttacccggta
    17521 gatatcagcg aagtttcccg ggtgatggaa aacctgctgc tggaatcggc ggataaactg
    17581 ctgcgttaca aagggatgct gtggattgac ggcgaaccta accgcctgct gttccagggc
    17641 gtccagcgcc tctacagcgc cgactgggac cgcccgtggg gcgatgaaaa accgcatagc
    17701 acgatggtgt ttatcgggat tcagttgccg gaggatgaga ttcgggcggc gtttgcggga
    17761 ctcaaaaagt aaccagccct ccaacatcac aatacctgag actttatcac cctcatattc
    17821 ctccagaata tgagggcatt cgggcttaat tatctctgaa cgtgcaacac ttcctacgac
    17881 tccttatgcg cctccacatc ctgcttcgtt aaccagagcg acttacgacc aaaattttcg
    17941 tacattttca gctgatcttc atagtgctga tcaactgttc catcgggagc aataaaccca
    18001 ctctgaccgg gtgcgaccac atcccaggca agcaccggac gatcgcttgt cgttggtgag
    18061 aaaacaatca tatcgttttc tgttccacgg ttttgatact ccgcctgatg acgcgtttct
    18121 tccgctgcgg cctgcggtac atcaaagaaa ttatttgccc ggaacgttaa ggccattgca
    18181 ggtgttttcc agttactcac attattgcca tagcgtttgg aaagagtctc ccaggtatct
    18241 tccagcgcag ccaacacaac ctcctgctgt ggtttcccag caaacagatc aaccgcctgt
    18301 gggattggtg atttgtctcc ctgcaccgcc tcatacaaaa tttttgctcc aacacttata
    18361 ttcagcgaac cagttgggcc gtcctgggtt gtttcgtagc cactggcgct gtaccactta
    18421 tcaaatggca taggtacggc agccactacg gtacgcttca acatactggt cagccaaacg
    18481 ttcaggatgg cagagcctgg c
//
LOCUS       DAJVUY010000080        17927 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.080, whole genome shotgun sequence.
ACCESSION   DAJVUY010000080 DAJVUY010000000
VERSION     DAJVUY010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.080"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            679..1044
                     /locus_tag="OQQ72_002414"
     CDS             679..1044
                     /locus_tag="OQQ72_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS2012107.1"
                     /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1084..1779
                     /locus_tag="OQQ72_002415"
     CDS             1084..1779
                     /locus_tag="OQQ72_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCS2012108.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            1846..3264
                     /gene="dcm"
                     /locus_tag="OQQ72_002416"
     CDS             1846..3264
                     /gene="dcm"
                     /locus_tag="OQQ72_002416"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-cytosine methyltransferase"
                     /protein_id="HCS2012109.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQMLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3245..3715
                     /gene="vsr"
                     /locus_tag="OQQ72_002417"
     CDS             3245..3715
                     /gene="vsr"
                     /locus_tag="OQQ72_002417"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VSPR family DNA mismatch endonuclease"
                     /protein_id="HCS2012110.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="OQQ72_002418"
     CDS             complement(3704..4624)
                     /gene="yedA"
                     /locus_tag="OQQ72_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HCS2012111.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
     gene            4797..5714
                     /locus_tag="OQQ72_002419"
     CDS             4797..5714
                     /locus_tag="OQQ72_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HCS2012112.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDSLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
     gene            5793..5975
                     /locus_tag="OQQ72_002420"
     CDS             5793..5975
                     /locus_tag="OQQ72_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HCS2012113.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            6146..7840
                     /gene="yedQ"
                     /locus_tag="OQQ72_002421"
                     /pseudo
     CDS             6146..7840
                     /gene="yedQ"
                     /locus_tag="OQQ72_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
     gene            complement(7837..8652)
                     /locus_tag="OQQ72_002422"
     CDS             complement(7837..8652)
                     /locus_tag="OQQ72_002422"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HCS2012114.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="OQQ72_002423"
                     /pseudo
     CDS             complement(8950..9166)
                     /gene="yodD"
                     /locus_tag="OQQ72_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
     gene            9329..9517
                     /gene="dsrB"
                     /locus_tag="OQQ72_002424"
     CDS             9329..9517
                     /gene="dsrB"
                     /locus_tag="OQQ72_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HCS2012115.1"
                     /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
                     WFFNEAGHQDGIFVEKAE"
     gene            complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="OQQ72_002425"
     CDS             complement(9561..10184)
                     /gene="rcsA"
                     /locus_tag="OQQ72_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS2012116.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL
                     ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
                     QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR"
     gene            complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="OQQ72_002426"
     CDS             complement(10469..11254)
                     /gene="fliR"
                     /locus_tag="OQQ72_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HCS2012117.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="OQQ72_002427"
     CDS             complement(11263..11532)
                     /gene="fliQ"
                     /locus_tag="OQQ72_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HCS2012118.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="OQQ72_002428"
                     /pseudo
     CDS             complement(11542..12278)
                     /gene="fliP"
                     /locus_tag="OQQ72_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly.; frameshifted; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
     gene            complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="OQQ72_002429"
     CDS             complement(12278..12643)
                     /gene="fliO"
                     /locus_tag="OQQ72_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HCS2012119.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="OQQ72_002430"
     CDS             complement(12646..13059)
                     /gene="fliN"
                     /locus_tag="OQQ72_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HCS2012120.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMHRLSR"
     gene            complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="OQQ72_002431"
     CDS             complement(13056..14060)
                     /gene="fliM"
                     /locus_tag="OQQ72_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HCS2012121.1"
                     /translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR
                     RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
                     NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
                     ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
                     LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL
                     KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
                     "
     gene            complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="OQQ72_002432"
     CDS             complement(14065..14529)
                     /gene="fliL"
                     /locus_tag="OQQ72_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HCS2012122.1"
                     /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD
                     KAQQRVVPSPVFYALNTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL
                     LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR"
     gene            complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="OQQ72_002433"
     CDS             complement(14634..15761)
                     /gene="fliK"
                     /locus_tag="OQQ72_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook length control protein FliK"
                     /protein_id="HCS2012123.1"
                     /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTD
                     KAAPQLLVATDKPTTKGEPLISDILADAQQADLLIPVDETLPVINDEQSTSTPLTTAQ
                     TMTLAAVADQNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDVPSTVLPAEKP
                     TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPH
                     QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK
                     VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ
                     QQQSQRTVNHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA"
     gene            complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="OQQ72_002434"
     CDS             complement(15758..16201)
                     /gene="fliJ"
                     /locus_tag="OQQ72_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FliJ"
                     /protein_id="HCS2012124.1"
                     /translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID
                     YQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR
                     EKKQRLQAWQTLQERLSTAALLAENRLDQKKMDEFAQRAAMRKPE"
     gene            complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="OQQ72_002435"
                     /pseudo
     CDS             complement(16220..17588)
                     /gene="fliI"
                     /locus_tag="OQQ72_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
     gene            complement(17588..>17927)
                     /gene="fliH"
                     /locus_tag="OQQ72_002436"
     CDS             complement(17588..>17927)
                     /gene="fliH"
                     /locus_tag="OQQ72_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707825.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS2012125.1"
                     /translation="ASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK
                     PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE
                     LCRLAAPGVV"
BASE COUNT         4399 a         4485 c         4716 g         4327 t
ORIGIN      
        1 caaccatctt gccgtagaaa tcaactttat tgccatcttt attgtaaatt tcagccgcat
       61 ttgctgcgcc agcaactaat aacgccggga ccagcattgc cagaactttt cttttcatta
      121 tgtattccct tgtgattata atcttcatga atatatcaat aagtgccgtt atccaaaaaa
      181 aagcacattt ggatactatt ctatgaagtt catttcattt taagtattac atgcaacaaa
      241 tgtatttaaa agatttcaaa atgtttctaa tctatttaat ataattcaga gatatgaatt
      301 ataaatattc atgaaaatta taaatgtata tcaatatgtt atgagttgag cggaaacata
      361 gggggtatca atgattgttg cgccaaacgg ctggtgtgat caggcgcaca ttaatgaagg
      421 cataaaaaaa agccggcatc atgccggccc aaaaaatata aacaagacga taaaaggcta
      481 ataacggaag catcatgaca cagaataata aaaaggtata attgtaatca gtgctaatat
      541 attgattaaa tgaattaata aagccgatat caaagataaa taaaatcgct caaaacgatt
      601 tttcctgtat tcactgccgt tgcgcaaaat ttatctattt gttcaaaaaa tgattgagtc
      661 ttgactggct catccaatgt ggaaaaatgt gacttttatc acataatagt actaagtctg
      721 aattttccgg gttatctcaa aatggaatac ggttcgacaa agatggaaga gagactctct
      781 cgcagccctg gcggcaaact ggctttgtgg gctttctata catggtgtgg ctatttcgtc
      841 tgggcaatgg cgcgttacat ctgggtgatg agccggatcc ccgatgcccc cgtgtcggga
      901 tttgaaagcg atttaggctc taccgcggga aagtggttag gggcactggt cggattttta
      961 tttatggctc tggtcggggc attgttaggc agcattgcct ggtacacccg acctcgtccc
     1021 gcacgtagca gacgctatga ataaaaactg ctaaggtggc gactctttgg caacggagcg
     1081 cgtatggact tacaacactg gcaggcacag ttcgaaaact ggttgaaaaa ccatcatcag
     1141 caccaggacg cggcccatga cgtgtgtcat tttcgccgcg tctgggctac ggcacagaag
     1201 ctggcggcag atgacgatgt cgatatgctg gtgattttaa ccgcctgtta ttttcacgat
     1261 attgtgagcc tggcgaaaaa tcatccgcaa aggcagcgtt cttcaatcct ggcggcagaa
     1321 gagacgcgtc gcctgctccg tgaagagttc gagcaatttc cggcggagaa aatcgaggcc
     1381 gtttgtcatg tcattgccgc tcacagtttc agcgcgcaaa tcgccccctt aacaacggaa
     1441 gctaaaatcg tccaggatgc ggatcggctg gaagccctgg gggcgattgg cctggcgcgc
     1501 gtgtttgccg tttcaggggc attgggcgtg gcgctgtttg atggtgaaga tccgttcgca
     1561 cagcatcgcc cgcttgatga taaacgctac gcgctggatc atttccagac taagttgctg
     1621 aagctaccgc aaaccatgca aaccgcaaga ggcaagcagc tggcgcagca caacgcgcat
     1681 tttttagtcg agtttatggc gaagctcagt gccgaactgg cgggggagaa tgaaggtgtc
     1741 gatcacaagg tgatagatgc gttttcaccc gcgggataag cgcgtggccc taaatggctg
     1801 taattatgtt aacctgtcgg ccatctcaga tggccggtta aatctatgca ggaaaatata
     1861 tcagtaaccg attcatacag caccgggaat gccgcacagg caatgctgga gaaactgctg
     1921 caaatttatg atgttaaaac gctggtggcg cagcttaatg gtgtgggtga gaatcactgg
     1981 agcgcggcaa ttttaaaacg tgcgctggcg aatgactcgg catggcaccg tttaagtgag
     2041 aaagagttcg cccatctgca aacgttgtta cccaaaccac cggcacatca tccgcattat
     2101 gcgtttcgct ttatcgatct atttgccgga attggcggca tccgtcgcgg ttttgaatcg
     2161 attggcggac aatgcgtgtt taccagcgaa tggaacaaac atgcggtacg cacttataaa
     2221 gccaaccatt attgcgatcc ggcgacgcat cattttaatg aagatatccg cgatatcacc
     2281 ctcagccata aagaaggcgt gagtgatgag gcggcggcgg aacatattcg tcaacacatt
     2341 cctgaacacg atgttttact ggccggtttc ccttgtcagc cattttcgct ggctggcgta
     2401 tcgaaaaaga actcgctcgg gcgggcgcac ggttttgcct gcgataccca gggcacgctg
     2461 ttttttgatg tggtacgcat tatcgacgcg cgtcgtccgg cgatgtttgt gctcgaaaac
     2521 gtcaaaaacc tgaaaagtca cgaccagggt aaaacgttcc gcatcatcat gcagatgctg
     2581 gacgaactgg gctatgacgt ggctgatgca gaagataacg ggccggacga tccgaaaatc
     2641 atcgatggta aacattttct gccgcagcac cgtgaacgca tcgtgctggt gggttttcgt
     2701 cgcgatctta atctgaaagc cgattttact ctgcgtgata tcagcgaatg tttccctgca
     2761 cagcgagtga cgctggcgca gctgttggac ccgatggtcg aggcgaaata tatcctgacg
     2821 ccggtgctgt ggaagtacct ctatcgatat gcgaaaaaac atcaggcgcg cggtaacggc
     2881 ttcggttatg gaatggttta tccgaacaat ccgcaaagcg tcacgcgtac gctgtctgcg
     2941 cgttattaca aagatggcgc ggaaatttta atcgatcgcg gctgggatat ggccaaaggt
     3001 gagaaagact ttgacgatcc gctgaatcag caacatcgtc cacgtcggtt aacgcctcgg
     3061 gaatgcgcgc gcttaatggg ttttgaagcg ccgggagaag cgaaattccg cattccggtt
     3121 tcggacactc aggcctatcg ccagttcggt aactcggtgg tcgtgccggt ctttgccgcg
     3181 gtggcaaaac tgcttgagcc aaaaatcaaa caggcggtgg cgttgcgtca gcaagaggca
     3241 caacatggcc gacgttcacg ataaggccac tcgcagcaaa aatatgcgcg cgattgccac
     3301 gcgtgatacg gcgattgaga agcgcctcgc cagtctgtta accgggcagg gcctggcgtt
     3361 tcgcgttcag gacgccagtc tgcccggaag cccggatttt gtcgttgatg aatatcgctg
     3421 cgtgatattt acccatggct gcttctggca tcatcatcac tgctatctgt ttaaagtgcc
     3481 tgcgactcga accgagttct ggctggagaa gataggtaaa aatgttgaac gcgatcgccg
     3541 cgatatcagt cgtttgcagg aactcggctg gcgcgtactg attgtctggg agtgtgcatt
     3601 acgtgggcgc gagaagctga cggatgaagc gcttaccgag cgtctggaag agtggatctg
     3661 cggcgaaggt gccagcgcgc agatcgacac gcaggggatt catttactcg cttgatgcgt
     3721 cctgaataac tggcgcaact acgggttttg ccgggaagag atattttccc aacgtgacca
     3781 gtaccaccgc gaagacaatt acgccgagcg ccagccattc aatcttcgac agcgtctctc
     3841 cgcccagtcc cgtacccagc aagaccgcga ccaccgggtt aacgtaggcg tagctggtgg
     3901 cgagagccgg actgacatta cggattaaat acatataagc gttgatggcg ataatcgaac
     3961 caaacagcgc cagatagccg accgcaagga agcctgaaag ggaagggagc gccgtcagtt
     4021 tttcacctgc aatcatcgac gcgatcatta acaccacgcc tgccgccagc atctcaatcg
     4081 cacccgccat catccctaca ggtaaggtaa tgcgcgagcc ataaaccgag ccaaacgccc
     4141 agctaatcga gccgattaaa atcagaatcg cgccccacgg attgccgctt aaatttccac
     4201 cgctattgag catgatgatt ccggcaagcc caatggcgat acccacccat tccaatttgc
     4261 gcgttttaat gccaaacagg cggctgaagc acagggtaaa gaggggcacg gttgcaacca
     4321 caacggcggc gatgccggaa ggaacatttt gatgctcggc aaccgtcacc atgccattac
     4381 cgacagccag caataacagg ccaatcagcg cggcattgag cagcggacgt agcgggggga
     4441 gcttgtgtcc gcgcagtagc aaaaatgcca tcaataaaat accggctgcc aggaatcgaa
     4501 cgcctgccat cattaacgga ggccagcttt ccacgccaat ccgaatgaca aaataggttg
     4561 agccccaaat gatatacaac gcaaacagcg cgccaaaaag cggtaacaac tggcggaaac
     4621 gcataatccc tcacggtgga aataaaaagg tggttcatag taaacgtgaa aatcattctg
     4681 ctggcgagag atataattgc acttgattgt taaaaaaatg ttgacctgtg aagcaagtat
     4741 cagagctgcc gtttttgctt catacttaca cccttcaaca ataaaaatga gagggaatgc
     4801 ttttggccgg gagtagttta ctgacgttgc tcgatgatat cgccacacta ctggacgata
     4861 tctccgtgat gggcaaactg gcggcgaaga aaaccgccgg tgtattaggg gatgacttat
     4921 cgctcaatgc gcaacaagtt tcaggcgtgc gggccaaccg ggaacttccc gtggtctggg
     4981 gcgtggcgaa aggatcgctg attaataaag tgattctggt gccgctggcg ctgatcatca
     5041 gtgcgtttat cccgtgggcg attacgcctc tgttgatgat tggtggcgcg tttctctgct
     5101 ttgaaggagt agagaaagtg ctgcatatgc tggaggcgcg taaacataaa gaagatccgg
     5161 cgcagagcca gcagcgtctg gagaagctgg cggcgcagga ttcgctgaag tttgaaaagg
     5221 acaaaataaa aggggcgatt cgtaccgatt ttatattgtc tgccgaaatc gtcgccatca
     5281 cgctggggat tgtggccgaa gcgccgttgc ttaatcaggt gctggtgctt tcaggcatcg
     5341 cgctggtagt gaccgtgggc gtctacggtc tggtaggggt tatcgttaag attgatgacc
     5401 tggggtattg gctggcggaa aaatccagcg cgctgatgca ggcattaggt aaagggttat
     5461 tgatcattgc gccctggctg atgaaagcgt tatcgattgt cggcacgctg gcgatgttcc
     5521 tcgtcggcgg cgggattgtg gtacatggta ttgcgccgct gcatcacgcc attgaacatt
     5581 tcgctgggca gcaaagtgca gtggtggcga tgatattacc gactgtttta aatctgattc
     5641 ttggatttat catcggcggc atcgtggtgc tgggagtgaa agccgtagcg aaaatacgcg
     5701 gtcaggcaca ttaatactcg cacaggctat tatgcaaaat tcgccatctt caactaaggt
     5761 gaacaagttt cactcgaaaa aaggaggcga gtatgagctt tatggttagt gaggaagtta
     5821 cggttaaaga gggcggcccg cggatgattg tcaccggata ctccagcggt atggttgagt
     5881 gtcgttggta tgacggttac ggggtcaagc gggaagcttt tcatgaaacc gagcttgttc
     5941 cgggggaggg gagtcgttct gcggaagaag tttgaaaggg tatcattaac accaggccgg
     6001 atcacttccg gcctggtgtg ccaatgcctg caatgaatga tagtcgcgtc ttatcatgcc
     6061 accattataa aattatcgct gttttgcggt acgctatcgc caggttatgc cagaatcata
     6121 aaaaagcagg ttgggagtcg tcagggtgca gcacgagaca aaaatggaaa accagagctg
     6181 gttgaaaaaa atcgcacgcc gcctggggcc tggtcatgtc gttaatctct gctttatcgt
     6241 ggtattgctt ttttccacct tgctgacctg gcgtgaagtg gtagtgctgg aagatgccta
     6301 tatctccagt cagcgtaatc atctggaaaa cgtagccaac gcgctcgata agcatttgca
     6361 gtataacgtc gacaaactga tctttttgcg taatggcatg cgcgaagctc tcgtagcgcc
     6421 actggatttc acttcactgc gtaatgctgt aaccgagttc gaacagcatc gcgacgagca
     6481 cgcctggcaa attgaactca accgacgacg caccctgtca gtcaatggcg tatcggatgc
     6541 attagtcagc gaggggaatc tcctgtctcg cgaaaatgaa agcctcgaca atgaaattac
     6601 cgctgcactg gaagttggtt acttgctgcg actggcgcac aacacctcgt cgatggttga
     6661 acaggcgatg tatgtctcgc gtgccggatt ttacgtttcg acgcagccga ccttgtttac
     6721 gcgcaatgta ccaacgcgtt attacggcta tgtcacccaa ccctggttta tcggccattc
     6781 gcaatgagaa aatcgtcacc gcgcggtacg ctggtttact tcgcaaccgg aacacgccag
     6841 caatactgaa ccgcaggtta ccgtcagtgt tccggtagac agtaataact actggtatgg
     6901 cgtgctgggg atgagtattc ccgtgcgtac catgcagcaa tttttaagaa acgccatcga
     6961 taaaaacctc gatggtgagt atcagctcta tgacagtaag ctgagatttt tgacctcttc
     7021 caatcctgac catccaacag ggaatatttt tgatcctcgt gaactggcct tgctggcgca
     7081 ggcgatggaa catgacacgc ggggcggcat tcgtatggac agtcgctatg ttagctggga
     7141 acgtctggac catttcgacg gtgtgctggt gcgcgtccat acgctaagcg aaggcgtgcg
     7201 cggcgatttc ggcagtatca gcattgcatt aaccctgctg tgggcgctct ttaccaccat
     7261 gttactcatc tcctggtatg tgattcgccg gatggttagc aacatgtatg ttctgcaaag
     7321 ctcgttgcag tggcaggcgt ggcacgacac cttaacccgt ttatataatc gtggcgcact
     7381 gtttgaaaaa gctcgtccgc tcgcgaaatt gtgtcagacg caccaacatc ctttttctgt
     7441 cattcaggtc gaccttgacc attttaaagc gattaatgac cgctttagtc atcaggcggg
     7501 cgaccgtgtt ctttctcatg ctgccggatt aattagcagt tccttgcgtg cgcaggacgt
     7561 tgccgggcgg gtcggtggtg aggagttttg tgtgattctg ccaggcgcga gtctgacgga
     7621 ggctgcggaa gtcgcagaac gtattcgcct gaagttaaat gaaaaagaga tgttgattgc
     7681 taagagtacg acgatacgca tcagtgcctc gttgggggta agtagcagcg aggaagccgg
     7741 tgattatgat tttgaacaac tccagtcact ggctgaccgt cggctttatc tcgctaaaca
     7801 ggccgggcgt aatcgggtat gcgcgagcga taacgcttaa cgagcggaga aaaaatggtc
     7861 cagcccttca cgccatcctt ccggtccttc acgctgcgtt cgccagacgc gggccggatc
     7921 ctcatcatgc agatgcaccc cttcacggtt tagccctttc acaatcaccg cgtaatccat
     7981 tacctccagt aagggcgcat cgtttggccc atcgcccagg ccaagtgtgg ttgggcgttt
     8041 gcctgataat tgttgatagg tcgcgataat ccagttggcg gcctgatctt ttccggcaga
     8101 ggcatccagg acgtgccaga agcgcgcacc ctgcataaac tgtaagccca gttcgttcag
     8161 acgagcggta aattgtgcca tacgctcgtc actgtcgcgc cagattagcg ttaccgacgc
     8221 ctcatgcagc tgcgtcagcg ccgcctggct acggcttaat cccgtccatt cggcgatggt
     8281 tgcatcgtcg acatcatcga aagtcgtgaa tttaaaatgt tctttctcgc gtagcgtatt
     8341 taaaacctgg ctgatttcgc catggctaat acctgagatg atgcgtggaa aaccgtctat
     8401 atcctgccat tgttcagcaa gctggatcac tgcgccattt tcggcaatca gtggtacccc
     8461 ttgtaacccc aacgtttttt gcaagtacag catttccgct gaagttttac tgctacagag
     8521 aatgacggga acattcgctt cgcgtaaacg gctgagccag ggggcagccg gttgccagtc
     8581 ataactatga ctgtccagca gggtgccatc aagatcgcta aaaaccagta gtggttgttg
     8641 aattgaaaac atggtcgcgc agttctcccc ttaccaggat gattctcaaa acagcacaaa
     8701 taatcaaaga tgattttttc gggagcgatc ccgttgacgc cagagccacc aaggggtgac
     8761 gcacgtcaca tttctattca taagtagcgt taatcattca tatcgcgaat attttcttgt
     8821 cagcgaaaaa aattgcggat aaggtgatga acacatcaga tttcctggtg taacgaattt
     8881 tttaagtgct tcttgcttaa gcaagtttca tcccgacccc ctcagggtcg ggattttttt
     8941 attgtgcatt caacgattca cttcagagac gctgaagtca tgaatatcca gttcgaaggc
     9001 atccgccaat tcacgccatg tatgatattc acgtccatcg acgctaacgt gttcagaatc
     9061 gttctggctg cgatgaactt atttcattga tcgccgccag cagggcatcg acatcgacgc
     9121 tgacctcacg ttttgcggta tcgctgtact cttttgcggt tttcatcatc tttcctcgca
     9181 accgttactc tgttgttgcc gccagtcgtt aagtccgcct ggcatctctt aagtatagac
     9241 cgtcgagaaa atcagcactc gcgcgcgcct ggcgctgcca gaaaaacgaa attgttctac
     9301 actggcacaa agccacagga ggaaaacgat gaaggtgaat gatcgggtaa cagtcaaaac
     9361 ggatggcggt ccgcgtcgtc ctggcgtggt actagcagtt gaggagttta gtgaaggcac
     9421 aatgtacctg gtttcgctgg aagactaccc gctcggcatc tggttcttta atgaagcagg
     9481 gcatcaggac ggtatctttg tggagaaagc agagtaatct tattcagcct gactggtggg
     9541 aaaccaccag tcagaatgtg ttagcgcatg ttgacaaaaa taccattagt cacattatcc
     9601 gtcagtcgga cgacatggta gataacctgt ttattatgcg ttttgatctt acgtttaata
     9661 ttacctttat gcgatgaaac ggtcttggct ttgatattca tttggtcaga gatttgaatg
     9721 gttccctgac ctgccatcca cattcgcaac atactcgatt cggttcggct caatgataac
     9781 gtcggcatat ttaaaaaaga ggttatcgtt gtctcttttt tcagaatatc gccaaggata
     9841 tcgtcgagag attccggttt aatcgattta gaacttatca ataaattttt tctgaccaat
     9901 agatattcat caaaatgaac attggcaatt gccataaaaa cgataaataa cgtattggga
     9961 tgttgattaa tgatgtgctt gatgtgctga ctgttagaag catcatggat gaaacagtcc
    10021 tcattaataa acaccactga agggcgctgt gaatcacaag ctatggcaag gtcatcaacg
    10081 gtttcaatgt cgttgatttc tcttttttta acccctctac tcaacagata cccggttaaa
    10141 cctagtcggg tgtaactaca taaatccata ataatcgttg acatggcata ccctcactca
    10201 atgcgtaacg ataattcccc ttacctgaat atttcatcat gactaaacgg aacaacatgg
    10261 gtcacctaat gcgccactct cgcgattttt caggcggact tactatcccg taaagtgttg
    10321 tataatttgc ctggaattgt cttaaagtaa atgttgcgat atgtgagtga gcttaaaaca
    10381 aatatttcgc cgcaggagta tcctggaaga tgttcgtagg tattattttt cggataatcc
    10441 ttaggataac atgataaacg ttacggaatt atattaatgg caattcacta ataatatcag
    10501 ccagcaaatt aaacatctca ctgaataaat gttcgcaaaa aggtgcaatt aacggcatta
    10561 atgccgccat taaagagata ccgacagtca gagttaatgg aaatccaata acaaaaatgg
    10621 ataattgcgg ggccatacga ttcagtaaac ctaatgccag attcagggtc agcagcagag
    10681 taatgagcgg taacgccagc atcagcccgt taaggaaaat caaactcccc gctttggtga
    10741 gtgccagaaa cgcattgctg ttcaacggtt cgccaccaat tggcagggtg tgaaaggtat
    10801 cgaccagcag tgaaatcaac cataaatgac cgttaaatgt caggaacagc agtaacgcca
    10861 gcatatccat gatacgcgct aaaacgggca tattgagatg gctggccgga tcgacaaacg
    10921 tcgcaaatga cagccccatt tgcagaccga taatttcgcc agcggttcgc acagcggcaa
    10981 aggcaaattg catggtaaaa ccaagcgcaa tgccgatcag gatctgctgc acggccagcc
    11041 acagagcaaa gaacgaaaaa acaggaacat cgttggcagg taatgatggg gcaatgacga
    11101 acgtgatcat cattgccagc cccagtttta cccgtttcgg cacgctgcgt tcgctcagaa
    11161 ttggtgcggt agaaatgagc gccagcacgc gcagtaacgg ccagaagtac aggcttaacc
    11221 aggaaagcca ttgatcgctt gtcacctgca tcattgtacg gcctacccga tgatatacgg
    11281 caggttagtg aacaaggtgc ggacgtaatc cagcaacaga ttgagcatcc acggtccggc
    11341 aataataatg gcaataaata cggcgatgat ttttggaata aacgacagcg tcatttcgtt
    11401 gatctgcgtg gcggcctgca aaatactgat gataaggccc gtgaccagcg ccaccagcaa
    11461 cagcggggca gccagtgcca gcgcgacttt catcgcttca gtccccatca tcatgaccga
    11521 ttcaggtgtc attttgcctc tctagctgta aaagctctgc gccagcgaac cgaccagcaa
    11581 ttgccagcca tccaccagta caaacagcat cagtttaaag ggcagagcaa tggtggcggg
    11641 gggaccatca tcatccccaa tgccatcaac acgctggcaa tcaccaggtc gataatcaaa
    11701 aaaggaatga aaatcgtgaa gcctatctga aatgcggttt tcaactcgct ggtcacgtag
    11761 gccgggcgca aaatgcgcat cggcacggct tcaggtccct gcaacgggcc ggtattcgct
    11821 agtctggcaa acaaccctaa atctgcctca cgggtctgac gcagcataaa ctcacgtagc
    11881 ggctgcgccc ctttttccag cgcctcctgc attgatattt tctcttcgct gaatggctgg
    11941 tacgcatcga cataaatttt gtcgatcacc ggtgacataa taaaaaaggt caaaaatagt
    12001 gccagcccca gcaatacctg gttaggtggc gcggagggcg ttcccagcgc gttacgcaat
    12061 aaaccaaaaa caatgatgat gcgggtgaaa ctggtcatca tcagtaaaat tgccggaata
    12121 aacgtcaacg aggtgatgaa caccagcgtc tgcaccggga gcgaccagct ttgtccaccg
    12181 ccaggcagcg gctggctggt gatacccggc agttgcgcga aggcgagggg cgtaaccagc
    12241 cagagaagga caggtgcgac agacaacaaa cgacgcatca ggatctccca ctacgcttaa
    12301 gcaaattttt catgaccgac tgaaaatcgg tctgcggtat ctcttctgtt ggtgctgaag
    12361 ggggaagttt atgcagcaga ttgatttgcc ctgcggtaac gccgagcacc agccgtgcat
    12421 cttccacatc gaccaccaca acccgttcac gcgcgcccag cgaagcactg gcgctaattt
    12481 tcagaccgtt aacgccagtg cgtttcgggg caaatcccaa ccgttttacc tgccaggcag
    12541 cagcgaggat cagggcaata atggcgatga gtgcgccgct gacctgcagc agtggcgcag
    12601 cagaaaccgg cgtggaagat tgcacagtag cgtggttatt catcactaac ggctcaggcg
    12661 atgcattcgc tcagacggag taatgatatc ggtgatccgc acgccatatt tatcggcaac
    12721 gaccaccact tcgccctggg cgattaaata accgttgatc agaatatcca gtggttcgcc
    12781 cgccagaccg tccagcgcca cgacggaccc ttgcgtcaga cgcaacagct ctttgatggt
    12841 catccgcgta cggcccagct cgacggtcag cttgaccgga atatccatta tcaggtcgat
    12901 atcctgcaac gttccgctga catcaccacc gccaaattgc tggaacaccg cgtcggcagc
    12961 gcttttgctg ctggttgatt tttgttcgct caacgcttca gcccacagat cgtccattgc
    13021 gccgttgttg tcatcggccg gattattcat gtcactcatt tgggctgttc ctcgttcaga
    13081 gaatttaaaa tcgggttaat caaatgttct atccgtaacg catactgacc gttgagagtg
    13141 ccgtactgac tggtcagcac cgggacgccg tcaacatggg cgatgatgcg atcaggtttt
    13201 tctatcggca ggacgtcgcc gggtttcagt tttaaaatct gcgacaggcg tagcgagata
    13261 tcggcaaagt tggcgaccag ctccagctgt gaatgctgca cctggcgcac caggttatcg
    13321 cgccagttct gatcttcatt acgcgagttt tccagcggcg ggttaaccaa caattcccgt
    13381 agcggctcga tcatgctgaa tggcagacag atattaaatt cgccggtcag gttgccaatc
    13441 tccacatgga acggcgtgtt aaccacaatg tcgttcggcg aggtggtgat attggtaaat
    13501 ttcacctgca tttccgaacg cacgtactca acttccagcg gattaatcgc cttccaggcg
    13561 tcgctatagc cttcaagcgc cagctttaac atgcggttga tgacgcgctg ttcggtatgg
    13621 gtaaactcgc gaccttccac tttggtcggg aagcgtccat cgccgccaaa caggttatcc
    13681 acggcgataa acaccagact cggtgaaaac accaccagcc ctgtgccgcg cagcggtttc
    13741 agatggataa ggttcaggtt ggtcggcacc ggcaggttgc gggcaaattc atggtacggc
    13801 tgaatgcgga tggccccgac ggttatatcc gggctacgac gcagcaggtt gaacagcccc
    13861 atacgaaaat ggcgggcaaa gcgctcatta atgatttcca gcgcctgcaa acgttcgcgc
    13921 acaacccgtc gttgggtatt cggatcgtac ggacgaatgt cactttcgcc gctaacactg
    13981 gctgtcggtt cgtctttgac ttcgctgtca ccattcaaca gcgcatcaat ttcagcttga
    14041 gaaagaatac tatcgcccat gtcgttatcg cagaataaaa gcggtataca gcacgtcggt
    14101 gacatcctgt ttcggttgcc cggcaacaag cggggtggaa agcgtggttt taatctcggc
    14161 aatcaggttt ttcttgcctt cttctgtcgc cagtacggca gcatcctgac gcgaaaacag
    14221 taacagcaaa cggctacgga cttccggcaa atactcactc agccgcgagc gggtagcttc
    14281 atctttcagg cgcagggtta tgccgatata aagcacgcga tccgcatcgc ccaaattgac
    14341 cgtgaaggta ttcagcgcgt agaagaccgg ggagggtacg acgcgttgct gcgctttgtc
    14401 gtcagcggca acctgatgcg aatgccagta gctgtaacct gcgctggcac aggccgcgag
    14461 ggtaatgaat accagaatcg ggatccaaag cgatcgcttg cttttcttgc ttatcgcgta
    14521 atcagtcatg tgttgcggtc ttcctgtgtc gctactgctt atcggctaat tatcctgcgt
    14581 tttgagcgca acaaagcggg gaaaagacgc ggattacggt gctacctctg acgttaggcg
    14641 aaaatatcaa cgccgctgtt gcctgttaca cgcccttgta aagagacggg aaccggaagc
    14701 gtatcgtcgt cttcccccgc cagaggttca tggtttactg tgcgttggct ttgctgttgt
    14761 tgggaagcgg cctgctgctg accactaaag ctttcgccac tgatgttgct ttgccctaac
    14821 tgaatgccac tttcggccag ctgcgtacgc agtaccggaa gcgctgcttc cagcgcggcg
    14881 cgtacatgct gatgcggtga aaccatctgg atttgcgcct ggttatcatc cactttgagg
    14941 gagatttgca cttcacctaa atcctgcggg tgcagacgca actctgcact ttgttgcccc
    15001 tggcgggtga acagcgaaat atgctggctt aatgattgtt gccattcgtg agaacccagc
    15061 ggtgcactca aaacaggcgc ggcgacggtg ggcagtggct gtgtctggtg tggagtaatt
    15121 agcgggctgg cggcagcggt caccggtgac ggtgtgctga tgacttccgc tttactctgg
    15181 gcttctgcta ccagcggtgt taatggctga gctggcgtgc cgggggcatc atcaggctgt
    15241 gctgttgtga gttgcgcaga agtcagtttt gtgaagagcg ttggtttctc tgccggtaac
    15301 acggttgacg gcacatcagt cactttgggc gtattgtcaa aacccggcaa catcgcaaaa
    15361 agggcgctca ggcttgcggt gacgtcttca ttcagatcat ccgctttttc gtcttttgtc
    15421 gtattttggt cagccaccgc agccaacgtc atcgtctgag cggtggttaa cggtgttgat
    15481 gtggattgtt cgtcgttgat gacaggcagt gtttcatcca cggggatcag taaatccgct
    15541 tgttgcgcgt cggcaagaat atcgctgatc agcggctcgc cttttgtcgt gggcttatct
    15601 gttgccacca gcaactgggg ggccgctttg tcggtagttg tctcgcctgc taatgcttcg
    15661 ctcaacaacg cgagaaaatc ttgtgcagca tcgctggctt tgccgccagg caatgtggtg
    15721 gtgtcaacgt cggcggtaat taagggcgct aagcgaatca ttcaggtttc ctcatggcgg
    15781 cgcgctgggc gaactcatcc atctttttct gatcgaggcg gttttctgca agcagtgccg
    15841 ccgtggatag ccgttcctgc agtgtctgcc aggcctgcaa acgttgtttc ttttctcgcc
    15901 agctgttcag ggcaatgtca actttctgcg tccactgatt aagttgctgg cgatgctgag
    15961 taatggcttt ttccagcgtc tggataaact gctgatagtt gatccagcgg ttgctggtca
    16021 tcccggcact catatcgctg ttgaggttat tgcgatattc attctgataa tcgatcagca
    16081 ttttgagctg ttcttccgcc tgctgacacc cgcgacgcat ttcacccagc aggcgcgcgg
    16141 catcctctac ctctttttct gccagatctt tcagggtcgc cagcgcgcca tgttctgcca
    16201 tctgccgtta tctcctgggt tatgacactg tcgggaaaat acgctccagc ccctggagag
    16261 acgcttccca gtccgcgcgt tcaaaaatgc cttgttgcaa atagccctcc agctgcggcc
    16321 acagggcgat ggctttgtcg agcatcggat cgctgccttt ggcatacgcg ccgacgctaa
    16381 ccagatcgcg gttacgctga aaactcgaca acagctgttt gaaggtgcgc actcgcgcgt
    16441 aatgttgctc actgatcaac gccgtcattg cgcggctgat cgacgcttca atatcgatag
    16501 ccggatagtg cccggcttcc gccagtcggc gagacagcac aatgtgaccg tcgaggattg
    16561 cccgcgcaga gtcggcaatg gggtcctgct ggtcatcgcc ttcagtgagc acggtataaa
    16621 acgcggtaat cgatccgccg ccgctaatgc catttccggc acgctcgacc agtgccggta
    16681 atttggcaaa caccgacggg ggataacctt tagtggcggg tggttcgcca atcgccagcg
    16741 caatttcacg ctgggccatc gcgtagcggg tgagggagtc cataatcagc aacacatgct
    16801 gaccacgatc gcgaaaatct tcggcaatgc gcgtggcata ggcggcaccc tgcattcgca
    16861 ggagaggaga aacatccgcc ggagcggcaa tcaccacgga gcgtgcacgc ccttcggcac
    16921 cgaggatatt ctcaataaaa tcttttactt cgcgtccgcg ttcaccaatc aaacccacga
    16981 caatgacatc ggcgcgggtg taacgtgcca tcatccccag cagcacactt ttaccaacgc
    17041 cggacccggc aaacagcccc atacgctgcc cacgcccaac ggtaagcagg gcattgattg
    17101 ggcgcacgcc ggtgtccagc acatgttcaa tcggtgtacg ttgcaacggg ttaaatggcg
    17161 gggtaatcag cgcaccggtt tccgtcgtat cgggggaggc catcgagcgg tttaccgctg
    17221 ccgtccagaa cacgacctaa taacgccgga ccgagcggta actgtttgcc gctttgcagc
    17281 ccttctgccg aaatgttttt ggcataaaca cgcgcgccgg gcaggacacc ttcgacttcc
    17341 tccagcggca ttaaaaacag ccgttgaccg ttaaagccaa cgacttcact ttctacttcg
    17401 tgcgtttcag tgccgttctg gcgctcaatc acacaggttg cgccgagcgg caattgtaat
    17461 ccggtggctt ccagcaccag cccggtagcg cgggttaatc gcccgtagcg acgtaccgca
    17521 ggcaactgcg ccattttggc ttcaaagtta tccagcgtgg ttagccagcg agtcaggcgc
    17581 gtggtcatta caccactcct ggtgctgcca gacggcagag ttcttgccag cgagtggcga
    17641 cactggcgtc gagatcgcct tcatcggcgg agactttaca gccgccagga tggagggtgg
    17701 gatcgccccg caagcgccag ccatgcaaac ttaaggtagc gccgagcata tcatccacac
    17761 gttgcagatc atccgggtgc acgcgcagct gtggtttacc gctgaataac ggttcttgct
    17821 gcaacaactg ttggatctgt ttgatgagtg ccgagttatc cactgttggc gtctgaccga
    17881 tgacctgacg tgctgcctcc agcgccatct gcatcaggcg cgaagca
//
LOCUS       DAJVUY010000081        17504 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.081, whole genome shotgun sequence.
ACCESSION   DAJVUY010000081 DAJVUY010000000
VERSION     DAJVUY010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17504
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.081"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..745
                     /locus_tag="OQQ72_002437"
     CDS             <1..745
                     /locus_tag="OQQ72_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS2012126.1"
                     /translation="SSTDKPAKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLSD
                     WQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLL
                     QDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYI
                     DQLHTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNSAAIYSGLGFERVPQDRD
                     IRSDRMHLTPANHPDLWTQENGEWIYLRN"
     gene            complement(816..1265)
                     /gene="rplI"
                     /locus_tag="OQQ72_002438"
     CDS             complement(816..1265)
                     /gene="rplI"
                     /locus_tag="OQQ72_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCS2012127.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(1307..1534)
                     /gene="rpsR"
                     /locus_tag="OQQ72_002439"
     CDS             complement(1307..1534)
                     /gene="rpsR"
                     /locus_tag="OQQ72_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCS2012128.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            complement(1539..1853)
                     /gene="priB"
                     /locus_tag="OQQ72_002440"
     CDS             complement(1539..1853)
                     /gene="priB"
                     /locus_tag="OQQ72_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HCS2012129.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHHSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            complement(1860..2255)
                     /gene="rpsF"
                     /locus_tag="OQQ72_002441"
     CDS             complement(1860..2255)
                     /gene="rpsF"
                     /locus_tag="OQQ72_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCS2012130.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            2582..2857
                     /locus_tag="OQQ72_002442"
     CDS             2582..2857
                     /locus_tag="OQQ72_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS2012131.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            complement(2932..3483)
                     /locus_tag="OQQ72_002443"
     CDS             complement(2932..3483)
                     /locus_tag="OQQ72_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HCS2012132.1"
                     /translation="MAINGLFVRTEPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPALNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(3580..4266)
                     /gene="ulaF"
                     /locus_tag="OQQ72_002444"
     CDS             complement(3580..4266)
                     /gene="ulaF"
                     /locus_tag="OQQ72_002444"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase UlaF"
                     /protein_id="HCS2012133.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     AQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(4266..5120)
                     /gene="ulaE"
                     /locus_tag="OQQ72_002445"
     CDS             complement(4266..5120)
                     /gene="ulaE"
                     /locus_tag="OQQ72_002445"
                     /EC_number="5.1.3.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HCS2012134.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(5130..5780)
                     /gene="ulaD"
                     /locus_tag="OQQ72_002446"
     CDS             complement(5130..5780)
                     /gene="ulaD"
                     /locus_tag="OQQ72_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS2012135.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG"
     gene            complement(5794..6258)
                     /gene="ulaC"
                     /locus_tag="OQQ72_002447"
     CDS             complement(5794..6258)
                     /gene="ulaC"
                     /locus_tag="OQQ72_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HCS2012136.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(6268..6573)
                     /gene="ulaB"
                     /locus_tag="OQQ72_002448"
     CDS             complement(6268..6573)
                     /gene="ulaB"
                     /locus_tag="OQQ72_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HCS2012137.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(6589..8037)
                     /gene="ulaA"
                     /locus_tag="OQQ72_002449"
     CDS             complement(6589..8037)
                     /gene="ulaA"
                     /locus_tag="OQQ72_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS2012138.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            8341..9405
                     /gene="ulaG"
                     /locus_tag="OQQ72_002450"
     CDS             8341..9405
                     /gene="ulaG"
                     /locus_tag="OQQ72_002450"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HCS2012139.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTPPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVQWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            9513..10268
                     /gene="ulaR"
                     /locus_tag="OQQ72_002451"
     CDS             9513..10268
                     /gene="ulaR"
                     /locus_tag="OQQ72_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HCS2012140.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(10265..11014)
                     /gene="yjfP"
                     /locus_tag="OQQ72_002452"
     CDS             complement(10265..11014)
                     /gene="yjfP"
                     /locus_tag="OQQ72_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS2012141.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVALAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            11196..11525
                     /gene="bsmA"
                     /locus_tag="OQQ72_002453"
     CDS             11196..11525
                     /gene="bsmA"
                     /locus_tag="OQQ72_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HCS2012142.1"
                     /translation="MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            11674..11949
                     /gene="yjfN"
                     /locus_tag="OQQ72_002454"
     CDS             11674..11949
                     /gene="yjfN"
                     /locus_tag="OQQ72_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HCS2012143.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(12066..13691)
                     /locus_tag="OQQ72_002455"
     CDS             complement(12066..13691)
                     /locus_tag="OQQ72_002455"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HCS2012144.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSLLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(13775..14833)
                     /locus_tag="OQQ72_002456"
     CDS             complement(13775..14833)
                     /locus_tag="OQQ72_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS2012145.1"
                     /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(14836..15474)
                     /locus_tag="OQQ72_002457"
     CDS             complement(14836..15474)
                     /locus_tag="OQQ72_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HCS2012146.1"
                     /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL
                     MGGAAFFVLKGCGDSGDVDNDGDGTFYSTVQDCIDDGNNADICARGWNNAKAAFYADV
                     PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR
                     PVWLNTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG"
     gene            complement(15484..15882)
                     /locus_tag="OQQ72_002458"
     CDS             complement(15484..15882)
                     /locus_tag="OQQ72_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HCS2012147.1"
                     /translation="MHILDSLLAFSAYFFIGVAMVIIFLFIYSKITPHNEWQLIKNNN
                     TAVSLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSE
                     KIINHNTAAGMFMGTAALAGGIFNAACMTW"
     gene            complement(15900..16559)
                     /locus_tag="OQQ72_002459"
     CDS             complement(15900..16559)
                     /locus_tag="OQQ72_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfK family protein"
                     /protein_id="HCS2012148.1"
                     /translation="MSGFFQRLFGKDNKPAIARGPLGLHLNSGFTLDTLAFRLLEDEL
                     LIALPGEEFTVAAVSRIDLGGGSQIFRYYTSGDEFLQINTTGGEDIDDIDDIKLFVYE
                     ESYGISKESHWREAINAKTMGAMTLNWQEKRWQRFFNSEEPGNIEPVYMLEKVENQNH
                     AKWEVHNFTMGYQRQVTEDTYEYLLLNGEESFNDLGEPEWLFSRALGVDIPLTSLHII
                     G"
     gene            complement(16610..17308)
                     /locus_tag="OQQ72_002460"
     CDS             complement(16610..17308)
                     /locus_tag="OQQ72_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HCS2012149.1"
                     /translation="MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDK
                     AGKSRVDLLARVKLSHDKLKDLRERKASLEARALEALSKNVNPSLINEVAEEIARLEN
                     LITAEEQVLSNLEVSRDGVEKAVTATAQRIAQFEQQMEVVKATEAMQRAQQAVTTSTV
                     GASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAEAGIGGSNKSR
                     AQDVLARLQRQQGE"
     gene            complement(17381..>17504)
                     /locus_tag="OQQ72_002461"
     CDS             complement(17381..>17504)
                     /locus_tag="OQQ72_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2170 family protein"
                     /protein_id="HCS2012150.1"
                     /translation="QKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEIT"
BASE COUNT         4464 a         4677 c         4188 g         4175 t
ORIGIN      
        1 ttcgtccacc gacaaaccag caaaattaaa atttcatcaa tacgcacgcg ctacattact
       61 gtcaaatcgt ggaagagatc ataattgcga tggcagacgt actgttgaga tccacaaact
      121 agatctctct gactggcaag cattcaataa gttagcaacg aagtgtaatg cttacgatgg
      181 agtaacaatg aatggtgata attcttttgg atggaaccat gaagctacat tagataatat
      241 tcacgcccag aaatacaata aagcttacgc gggtgcgagg ttaaccgcag aactgaaata
      301 tttattgcaa gatgtcgaat ccttcgaacc caacagtaaa tacacaatac acgaagtggt
      361 tttgggacct ggttatggta ctccagacta taccggccaa acgataggat acgttgtaac
      421 ccttcctgcc caaatgccta attgctggtc atctgaacta ccaacaatcg atctttatat
      481 cgaccaactt cacactgtta caggcgtttc taatgccctc ggattcatca ttgctgcatt
      541 gctaaacgcg tattctgatt taccccatga tttgaaaatt ggtctgcgtt ccttatcaaa
      601 ttcagcagca atctactcgg gtttaggttt cgagcgagtg ccgcaggacc gagacataag
      661 gagtgatcgt atgcatctaa cgccagcaaa ccatcctgac ttatggacac aagagaatgg
      721 tgaatggatc tacttgcgaa actaatacct gacgaaaaat agaaagcaaa acgccgacca
      781 atggtcggcg tttttacgtc tcgttgaata acgaattatt cagctactac gtttacgatc
      841 actttcgcga atacttcgct gtgaacctgg aagctcactt cgtgttcgcc agtggtacgc
      901 agaacgccgt tcggcagacg aacttcgctc ttagccactt caacgccagc tgcagttaca
      961 gcgtcagcga tgtcgcgagt accgatggaa ccgaacagtt taccttcgtc gccagcttta
     1021 gacgcgatgg taacagtttc cagtgcattg attttctcag cgcgagcatt agcagctgcc
     1081 agaacttcag ccagtttagc ttccagttca gcgcgacgtg cttcgaagaa ttcaatgttt
     1141 ttcttggtag ctggaacagc tttaccctgc ggtaccagga agttacgagc atagcccgct
     1201 ttaacgttta cctgatcacc taggctaccc aggtttgcta ctttatcaag cagaataact
     1261 tgcattacct tatcctctca aagtcgtatt aatggaccgt gaccgattac tgatggcgat
     1321 cagtgtacgg cagcagggac aggtagcgag cgcgtttgat agcgcgagcc agctgacgct
     1381 ggtattttgc acgggtaccg gtgatacggc ttgggacaat cttaccgctt tcggtgatgt
     1441 agtttttcag cgtagcgata tctttatagt cgatctcttg aacgccttcc gcggtgaaac
     1501 ggcagaactt gcgacgacgg aaataacgtg ccatatggct agtctccaga atctatcaat
     1561 tcaatctgct cggcatgcaa aaccattttg ctcagtccgt tctttgcctt gtggcatgaa
     1621 atgaacccct gaacggttat gcgactgccg accgttatac tgtgagtaat ggcttggttt
     1681 tcgtgtccgc taacaataac gggcatttgg caccacgcct gccggtgaaa accggcttcc
     1741 tcctgcacag aatgatgctc aagcacgaac tggcagtgag gaattcctga tggactgacc
     1801 tttcgaaggg gagtcctgca cacggtgccg gacaacacca gacggttggt catcagaaat
     1861 tactcttcag aatccccagc ttcagcatca tcagcggttt cgtttgcgaa atcatcgcga
     1921 cgctcacggc gctcgtcttt cgctttaacc atcggagatg cttcggtaac agcgtgcttg
     1981 gtacgcataa ccatgctgcg gataacggca tcgttgaagc ggaaggtagt ttccagctca
     2041 tcgatcactt cctgcggagc ttcaacgttc atcagaacgt agtgtgcttt gtgcagtttg
     2101 ttgatcgggt aagccagctg acggcggccc cagtcttcca gacggtggat cttgccttct
     2161 gcaccagtga tggcagcagt gtagcgctcg atcatgcccg gaacctgttc gctctggtca
     2221 ggatggacca taaaaacgat ttcgtaatga cgcatcgaat tgctccttac ggattattca
     2281 gcctcctgtc tgggtcagcc gaatcccggg gaggcaagga acgtgttaaa ggtcggctga
     2341 aaaatgacgc gttatagtac ttgtatgccc cactaaactc aaggccagcc gacaaataaa
     2401 tctcatcttt cgctcaaaag aactaactcg ctgatttgaa gttcatcaca ttccgtcaca
     2461 gtgttttttc gaacaactgc atcagaaatg gtcaccatca acttctttat cattgattaa
     2521 aattaaatca gaagatcatc acagaggaga gcacacaaag tcagccgtcg aggaggtatc
     2581 tatgttcagt cgtgttttag cccttctggc tgtgcttttg ctaagtgcaa atacatgggc
     2641 agccattgaa attaataacc accaggccag aaatatggac gacgtacaga gcttaggcgt
     2701 gatttatatc aatcataatt tcgccactga aagcgaagca cgtcaggcat taaatgaaga
     2761 gacagatgcg cagggcgcaa cgtactacca cgtaattctg atgcgggaac cggggagtaa
     2821 cggcaatatg cacgccagcg cggatattta tcgctagcac caggtataac caacgaaaca
     2881 ttgccatagt ttgctttgcc cccttcgcag ggggcttttt tatacggtta ttcaccggat
     2941 tgcgacttcc ggatctggct catgagtaat gcgattacgt aagtcgcggc gcataatttc
     3001 tattatccag aaccagaaaa tatgccccag gatttcagag gcatattcgt caaaaggcaa
     3061 ttgagtgagc ggcggcgtta aattcagcgc cgggcaaaat ataccgtgga ctgccactgt
     3121 cacaataagc cctgctaata tcccctgcca taatttcact ttcgggaaaa tttccgcgac
     3181 aatacaatac cctatcgcaa aaaccagtga gaagatgata tgcgtcacca tcaccgggtt
     3241 gataatatgt tccgagaatg tatacacagt ttgggttggg tcgataccta aataatcccg
     3301 tagaaagata tacggcgggt taaattcatc gcgaccaccg gaaaatgtgc gcggtggcaa
     3361 ggggacttcc gctccccatt taacaaatgc tgaaataatt cctgaaagta cacccacaag
     3421 taacgcaacg ccatagcggc gacgttgcgg ctccgttctg acaaacaatc cattgatagc
     3481 cataaaaaca cctgttgttt atacgatttt ttaactgaag cggccccgga atcagaccaa
     3541 ttacatcccg caggaggtaa taattccggg gcgcactgct tacttctgcc cgtaataggc
     3601 gttaggaccg tgcttacgca tgaagtgttt attcatgagg aagctgtcga tgtgattcag
     3661 ttgtgggtta atactgcgcg caatccacgc cattttcgcc acttcttcca tcaccaccgc
     3721 gttatgcacc gcgtcgtggg catctttccc ccaggcgaac ggcccgtgct gatacaccac
     3781 aattcccggc gtatgcagcg gctcggcgtc acccagcgtt tcgataatca ctttgccggt
     3841 gttcagttca tactcgccct gcacctcttc ttcgcttaat ccacgcgtac acgggatgtc
     3901 gccaaagaag tagtcggcgt gcgtggtgcc taacgccggg atcgccagcc ccgcctgcgc
     3961 ccatgcggtg gcatgagtgg aatgggtatg gacaatgccg ccgagcgacg ggtaacgacg
     4021 gtagagttca agatgcgtcg cggtgtcaga agacgggcga tacttccctt ctaccacctt
     4081 gccgctcata tcgaccacca ccatatcgtc tgctttcatg gtttcgtagg caacgccgct
     4141 gggcttgatc accaccagcc cgcgttcgcg gtcgatagcg ctgacgttgc cccaggtaaa
     4201 ggtcaccagc ccatagcgcg gcagatccat gttggcttca aacacctgct gttttagctt
     4261 ttgcattatg ccgcctccac catgcctgct ttggccatgc gcgctttcac ccaatcacgc
     4321 gctttcacca cttctgccgc cgggtcttcc gccgtttcgc tccacatctc aatcaggtac
     4381 ggcccgcaat agccactctg tttgagcgtt tcgaagcaac gttcgaaatc caccacacct
     4441 tcgccaaatg gcacgttttt gaagacgccc ggtttggtgt ctttcacatg caccgcgacg
     4501 atatgcccga ttccggcctg caactccatc tgcacatcgt tgtcccacgc cgacaggttg
     4561 ccgatatctg ggtagagctg gaaccacggg ttgttgagat agtgcgcgta acccagcgcc
     4621 ttgctgatgg agttcatcaa cggataatcc atgatctcca tcgccagcgt cacctgcgcg
     4681 cggctcgcca tctcaacgct ctctttcagg ccgtcacgga aacgacgacg cgtttcgtta
     4741 ttggcttcct gatagtaaac gtcatagccc gccagctgga tcacgcgaat gccaacgtcc
     4801 tgggcgaact ggatggcttt acgcataatc tccagcccct gcgcccgcac cgcgtcatct
     4861 tcgctgccca acgggaaacg acgatgggca gaaaggcaca tggacggcac acgcacgccg
     4921 gtttcaacaa tcgcattcac cagcgccaga cgctgctcgc ggctccagtc gaggcgcgac
     4981 aggcgctcgt cagtttcatc taccgacatc tcgacaaaat cgaagcccaa cgtttttgcc
     5041 agtcgcaggc gttccagcca gcactccccg gcggggagcg ctttttcata gatgccaagc
     5101 gggatttgtt tggacaacat atccgctcct tagccccaca gttcggcgat ggaacgtttg
     5161 aactgacgcg cggcttcaac cggagaagcg gcatcacgga tgctgcgacc ggcgataaac
     5221 acatgaattg gaatgccttt gaacagcggc agatcttcca gcgccaggcc accggtgacg
     5281 gtgactttga agcccatatc ggaaagacgt ttgatcgcag tgatatcggc ttcaccccac
     5341 gccacgccag cggcctgcgc gtcacggctg cggtgataaa ccacctgctg aatacctgcg
     5401 tcgcgccact gttgcgcctg ttcccaggtc cagtaaccgg tcagttcgat ctgcacgtcg
     5461 ccgttaaact cttttgctac gtccagcgca cctttggcgg tgttgatatc cgcacaacaa
     5521 atcacggtca cccagtcagc gttggcttcg aagcacatac gagaaagaat tttgcccgca
     5581 tcggcaattt tggcgtctgc cagcacgatt ttgtgcgggt agagcgcttt cagatcgcga
     5641 accgcacgca cgccttcgcc cacgcacaga atggtaccca cttcgataat gtcgacttct
     5701 tcggcaatca ggcgagtggt ttcgtaggcg ctatccatag tctggttgtc cagcgcgact
     5761 tgcaacatcg gtaatgacat cttcaattcc ttcttaagct gccgcgttgg tgcggtcaat
     5821 gagatccagt acttcctgct cggtacggca ggcacgtaaa cggtcgaaat tttcttcatc
     5881 ttcaaacagg ttgacgatct gcatgatgcc cacttcctgg tgcgtgttgg catcgaccgc
     5941 cgccatggtg atgaggatat ccaccgggtc gttatcttcg tggttgaact ccagcggctt
     6001 tttcagcgtc accagcgcaa aaccggtttt cttaacgccc tcttccgggc gaccgtgcgg
     6061 cattgccagg cctggtgcga gcacaaagta cggaccgtgc tgttcaaccg catccagaat
     6121 cgcctggtag taacgcggct cgacaacatc cgccgccacc agcaggtcaa cgccgatttt
     6181 tactgcgtcc tgccatgtct cagcttcagc ctgcaggcgg atggatttat tctccgccag
     6241 cgaatcacgt aatttcatgg cgcgtcctta cttcacatcc tgcgggaaat gcgctttgat
     6301 cacttccagc agtttcgggc caaagtcggc aggagagagc atgttgcgca cgccaaccac
     6361 gtatttgttg ccggtcacgg tgatttcgcc cgcaatgtgc gtagaagcga tgatgatatc
     6421 cgcgccgctc aactcgcttt tgtattcgcc aaccgcgcag ctatttaccg tgtggtcaat
     6481 gtttgattgg gttaaaaact ggtccacttt catcttcatg atcatggaac tgccttgtcc
     6541 gttgccacac acagccagaa tacgtacggt cataatcaaa actccttatt aagcagactg
     6601 ttctgccagt tgtttttctg catcttcttc tgcgcgcagt gcgcggccag cgaagaacat
     6661 ataagccagt gcaattacaa tgatgacggc cataaaggcg ataccgatgg agaagaagcc
     6721 ctgcatcatc ggcggtgcca gaatcgacca gtccgccatg cccatccagg cgctcatacc
     6781 ggtgagtttc accgcccaga cgcagccaaa gatttcaatc atccccatca ccagacatat
     6841 cttcagcgcc gcacgccagc cgccgaagtg gttagcgaac acgccgatgg tggcgttgga
     6901 gaagaacatc gggataaagc cgggaataat caggatcgag gaaccgcagg cgaccaggat
     6961 gccaaccgca atcagctgac cgatggtgcc ccacataaag ccccaaacca cggcgttcgg
     7021 cgcgaagcta tagatagccg cacagtcaat cgccagaacc gcaccaggga tcaggcgctg
     7081 ggagataccg ttaaatgctt cagagagttc cgccacaaac atgcgcacgc cctgagtgat
     7141 gatgaagatc gccaccgcga aggagaaacc agtttgcagg atgtacaccg tccagttcac
     7201 tttgcctgcc atcgcctgca cggtgtcgat accgaaggag agtagaatgg caccaaagaa
     7261 gatggtcatc acaatcgccg tggagacgat gttgtcgtgg aaaatattca gccagcctgg
     7321 cagtttgagg tcttcaacgc tttcctcttt tttgccgagg aacggcgcaa ctttataggc
     7381 aatccatgat gcaaactgtt gctggtgacc gatggagaaa ccgcagccgt ccgtcacttc
     7441 ctgagtcggc ttgtacatca tattggaggt aatgccccag tagagcgaaa ccagaatcgc
     7501 cgtgcagata atggttgtcc acatggagta gccgaaaata aacaacgtaa cggcaatcag
     7561 ccccgcctgc tggaacatga tatgaccagt cagcatgatg gtacgaatac cggtaatgcg
     7621 acgcagcagc acgtaacaga tgttcagcgc cagcgctaac aacaccgcgt aacctaccca
     7681 gctataggca tcgcccatgc ggtcgatggt tgccatcatc gacgcgtaag tatcggaaat
     7741 tgcgccgtta atgccgtaga cttcggacat tttcgccacc accggtttga aggtgctggt
     7801 gaggatgccg gaccctgcct gcaacaacat gaaaccaatt atggttttaa tcgtgccttt
     7861 aataataacg ctgacacttt tgcgcagtag gatgtagccc agacaggtca caatacccag
     7921 caacaacggg gcattggtca tgacctggtt aaaaaacacg gtaaagatgt tgtagagacg
     7981 atctcctgaa gaagaggtaa ccgggtattc cgcacacccg gaatgttgtg cactcactct
     8041 aattttcaaa agcaatcaca acaagattat ttatgattaa atgtgacgcg acccgcaaat
     8101 aattccatac ggatagagtg ggattcacac aacgaaacaa ttatttattt aaatttagtt
     8161 aaattcattt agttaattta actatacatt ccattaaatc tttccacact caaaatcaac
     8221 aacaacttcc ctggcaaaaa gtcaaaaaat ggtcattgcc ttcctgaaaa aatagtgtca
     8281 ggattaatca aaaccaatca catattgatt cgaattgaac tatcatgaag gtaaatggcg
     8341 atgagtaaag tgaaaagtat cacccgagaa tcctggatcc tgagcacttt cccggagtgg
     8401 ggtagctggc tgaatgaaga aattgaacaa gagcaggtcg cccctggcac atttgcgatg
     8461 tggtggctag gctgcaccgg gatctggttg aaatcagaag gtggcaccaa cgtttgcgtt
     8521 gatttctggt gcggcactgg caaacaaagt cacggtaacc cgttaatgaa acagggtcac
     8581 cagatgcagc gcatggctgg cgtgaaaaaa ctgcagccaa acctacgcac ccccccgttt
     8641 gttcttgatc cgtttgcgat tcgccagatc gacgcggtac tggcgactca cgatcacaac
     8701 gatcatatcg acgttaacgt cgctgctgcc gtgatgcaga actgtgctga tgacgtacca
     8761 ttcattggac cgaaaacctg cgttgatttg tggattggct ggggcgtacc gaaagagcgt
     8821 tgcatcgtgg tcaaaccggg cgatgtggtg aaagtgaaag acattgaaat tcatgcgctt
     8881 gatgctttcg accgtactgc actgatcacc ctgcctgccg atcaaaaagc ggctggcgta
     8941 ctgccggacg gcatggacga tcgcgcggtg aactatctgt tcaaaacgcc tggcggctcc
     9001 ctgtatcaca gcggcgactc ccactactct aactattatg cgaagcacgg taacgaacat
     9061 cagatcgacg tggctttagg ttcatacggc gaaaacccgc gcggtatcac cgacaaaatg
     9121 accagcgccg atatgctgcg tatgggtgaa gccctgaatg cgaaagtggt tatcccgttc
     9181 caccacgata tctggtcaaa cttccaggcc gctccgcaag agatccgcgt gcagtgggag
     9241 atgaaaaaag atcgtctgaa gtatggcttc aagccgttta tctggcaggt tggcggcaaa
     9301 tttacctggc cactggataa agacaacttc gagtaccact atccgcgcgg tttcgatgat
     9361 tgcttcacta ttgaaccgga tctgccgttc aaatcattcc tgtaatctgt cgtttatacc
     9421 ggatagcgtg gagaagttcg cgctatccgg cgtagtattt cctggctatt tcaaatatca
     9481 tctaaaaaaa tcaaatttta tcggaatagc tcatgactga agcacaaaga catcaaatcc
     9541 tcctggaaat gctcgcacaa ttgggctttg tgaccgttga gaaagtcgtt gagcgtctgg
     9601 gaatttcgcc tgccactgcg cgacgcgata tcaataaact tgacgaaagc ggcaaactca
     9661 aaaaggtgcg caatggcgca gaagctatta cccaacagcg cccgcgctgg acgccgatga
     9721 atctgcatca ggcgcagaat cacgatgaaa aagtacgtat tgctaaagcg gcctcgcagc
     9781 tggttaatcc gggcgaaagc gtagtcatca actgcggctc caccgcgttt ctgcttgggc
     9841 gggaaatgtg tggcaagcca gtgcaaatca tcactaatta tctaccgctg gcaaattacc
     9901 tgatcgatca agaacatgac agcgtgatca ttatgggtgg acagtacaac aaaagtcagt
     9961 ccatcacttt aagcccgcag ggcagcgaaa acagtctcta tgccgggcac tggatgttta
    10021 ccagcggaaa agggctgacc gcagaagggt tgtataaaac cgatatgctg acagcaatgg
    10081 cagagcagaa gatgctgagc gtggtaggga aactggtggt actggttgat agcagtaaga
    10141 ttggcgaacg cgcgggaatg ctttttagcc gtgccgatca aatcgatatg cttatcaccg
    10201 gcaaaaatgc taacccggaa atcctgcaac aactggaagc gcaaggggtc agcattctgc
    10261 gtgtttaaag atgctggcgg aaaaatgtca cggcagcatc taacgcctca ggcgtaatgc
    10321 ggtgacgcac gcctggctgc catgaacagg ttagcagttt atcccgtccc gtctcgctta
    10381 aggcctgctg caaacgtagt gattcgtcgg caggcacaac gtcatcgtcg aggccatgcc
    10441 acagcagtag aggtctgtcc ccaagttgtt ccaggtggtt tgtcgcttcc cactctgcca
    10501 gcggcgcgat aatgttattg aattcattct gctgtgctgc cgtttcaggt atcagcggtg
    10561 gaaacagtga acgggcgagc gatgtaaaat agcccgatcc catcatgctg gcggtacatt
    10621 tcaccgtggg gtggcgagcg gtaattccca gtgccgtcat cgcgcccatc gacgcgccac
    10681 cgactgccag acggtcatca agcagccagt tttcttcggc tattgccgca cgtaaagtag
    10741 tgaattcctg catactttgt agcaagattt gccagaattg atttaaccgc cgcgcttcgt
    10801 cgctactaaa acggctaccg tgatcgggcg catccggcat gatcacccgc aaaccagcct
    10861 gcgccagcgc aacggcaaaa tagctataca ccaggctgga tgaagtaaag ccgtgataaa
    10921 aaattacgca cggtaacggg gtatcttttt gcccgacagg ataagcatga agaacgggaa
    10981 tatctgccag ctcgcgtgat tctatttcaa tcatctgtct ctcctttttg tctggtatga
    11041 catgaagaaa tccttagcac aagtttctgc tggcggtatt agttcataat gttgagatgt
    11101 gggttacgct ttcgtcacgt tttcattcga aaatcgcgta ccaggtaaca attcgggaac
    11161 attcccccaa agttaaatta ataaggcact acactatggt tagcaggaaa cgtaatagcg
    11221 ttatttaccg gtttgccagt ttattattgg tgttgatgtt aagtgcctgt agcgcactgc
    11281 aaggtacgcc acagccagca ccgccagtaa cgaaccatcc gcaagagatt cgccgcgacc
    11341 agacgcaagg gttacagcga ataggtagcg taagcacgat ggttcggggt tctccggatg
    11401 acgcattagc agaaatcaga gcaaaagctg tcgctgcaaa agctgattat tacgttgtcg
    11461 tcatggtgga cgaaaccatc gtgacaggac agtggtattc acaagccatt ttgtaccgta
    11521 aataaatcag acaacttaca tagtcagctt tacattgctt tgcgtcccta tgcgtttacc
    11581 tgtgcacaat aaattaccgg ctggaagcct gggcgtttat taccgcgatg gaatgccctg
    11641 caacatgtgg ggaaacgaaa aatggagctg acgatgaaac aattacttgc ttcaccctcg
    11701 ctgcaattag tgacttatcc tgcgagcgcc acggcacagt ctgcagaatt cgccagtgct
    11761 gactgcgtga cgggcctgaa tgaaataggt cagatctcag ttagcaatat ttcaggggat
    11821 ccgcaggacg tggaacgtat cgtggcgtta aaggccgatg aacaaggtgc gtcatggtac
    11881 cgcattatta ccatgtacga agaccagcag cctgataact ggcgcgtaca ggcgatactg
    11941 tatgcatgag tgtcatctac agcaaatgaa caatgccgga ttcggcgcga gcgccttgtc
    12001 cggcctacaa ttttcacata tttcattgag ttaatcgaaa ccagcgtcgc atcagtcgta
    12061 tacgcttaca cacacactcc ccccgtcgcc cgcagcaata aatcattctg gatctgctct
    12121 gacaaccgta cgccgccgcg cgtatctaac atcacctgac accacgcctg cgccattggc
    12181 ggagaagcat atttcaacat ttgcgcaccg cagcccagca ggaatagctg atgagtaatc
    12241 tctcgcccca gttcttcagc tggcttacgc agctgctgct gtaaacgacg aaccgcgcga
    12301 tcaaaatagc gatcctgccc tttcacttcc acaaatgctt ccgacaataa gtcgtatacg
    12361 cccgcttgct tattgagaac gcgcaacaca tccaggcaca taatattgcc ggaaccttcc
    12421 caaatactgt ttaccggcat ctcccggtaa agccgcggca gctcgctctc ctcgcaataa
    12481 ccaatgccgc ccagcacctc catcgcttcg gccacaaacg gcatacctct tttgcagatc
    12541 acaaattttg ccgcaggcgt aaataaacgc gcccacaggg cttctttggc atcggcacgc
    12601 cggtcccacg ctcgcgcaag acgaaacagc aacgccgttt gcccttcaag ctgaagtgcc
    12661 atgcgactta agacatgaca cataaggggc tgttggatca atggattacc aaaaacatgg
    12721 cgttgatgtg catgataaat cgccagcgaa aatgcacggc gcatcatggc atggctaccc
    12781 agggcgcaat caaaacgcgt catcccaccc attttcagga tcagacgaat tccttcccct
    12841 tcctgcccca acaaccagcc aatggcatcc tgaaactcca cttcgcaact ggcgttagag
    12901 cgattaccca gcttatcttt cagccgctcg aggcgaatcg cgttgcgttg cccatcaggc
    12961 aaaaagcgcg gcacaaaaaa gcaggacaaa ccgcccgtag tctgcgccag caccagatgc
    13021 gcatcgcttt gcggcaccga gaaaaaccat ttatgcccca ccagccgata agagccatct
    13081 tccagacgct ctgcacgggt ggtgttgctc atgacatcgg aaccgccctg cttttccgtc
    13141 attcccatgc caatcaacaa accgcgtttt tgcccacctg gcaataagag agaatcgtag
    13201 cgatcgctca gcagcggcgt ggtccagtcc tgaaacggcg tgggtaacat ctgtaacaac
    13261 aatggcgtgg cggcaaaggt catcgttatt ggacataacg acccagcctc aacctgcgca
    13321 tgtaacataa aacgcgccgc gcgcgccaca aatgcgccgg agcgagcgtc ttcttcccag
    13381 gcaagattgt gcacccgatt ggtacataac gcctgcatca gcaggtgcca ggcggggtga
    13441 aaacgcacat cgtccagacg gcgtccttgc gcatcgtagc gcaataattc aggcggattc
    13501 acattcgcca gccgccccag ttcaagagat tcagccgttc ctaactgctg accaatactg
    13561 gctagaaaat cgctatccca gccagcacct tcacgcgtta ccgcttcaca gagcgcgcca
    13621 tcagacaggt ataagttgct gttatttaat ggtataggtt gattaaaaac ggtgtgagtt
    13681 tgccagtgca ctgtgtctcc ctccatcaat ggcagtcacc cttagtatgg tcactgccat
    13741 ggattcctga cagaaagaga ttgctaaaac attcttatcc agcaatgtaa tgcggaacga
    13801 aacgtgaggt gtctttggtg atcagcgtgt tatcttcacg gatccccatt ccgcacgctt
    13861 catcatcgac aatccagcta ccgatgagtg tgtagctatc gccaaatcgc ggcagaggtt
    13921 gaaacgcctg gtagatcatc ggttcatcgg cgtaatcacc atcagcgtgg tcaacgacgt
    13981 tattctgacc gtcgaaaatg gtgacgtttc cgccttcgcg tgagtagatc ggtttacgca
    14041 catagctttc gccagcggca atctgcggtt tttcgccctc aaaccaggat gcaagaaggt
    14101 taggatgacc aggaaagaag cgccaaagca gcggcattag ccctttatta ctcaagatac
    14161 ttttccataa cggctccacc cattgctcgc gacgcttgcg cagcagcgga ccgttatcgt
    14221 cacgcatcat ccactccagc ggatacagct taaatgcacg ctggatgaca ttatcatcaa
    14281 gatcggtcag tacgccgccg acgcccaaac cgagatcttc aatgtagata aaccgcgact
    14341 cctgccctgc ctgctgggcg cagtcctgca agtacagcac ggtactcctg tcttcatcgg
    14401 tgtcctgaca gcagcaaaaa taaaacggtt cccgactgta aagctcacta aagcgcgaaa
    14461 tcaggcgttc ctgaatggcg ttgtactcca gcagcttcac cggcgcattg ccacaccagg
    14521 caaaatccat ccggccatac agcgaaggat cgcgtgcgcg ccagctttcg gcgatcacat
    14581 cccagtacaa cggcgggatc gccagttgcg tcaggatctc ttcgtcttta accgcgcgat
    14641 ccaccacctc aaggcacatc tgatgcagtt ccgcagtcgg tttttcgatc tgctcttcaa
    14701 tctggcgcag agtaaaacgg taagcccgac tctcgtccca atagatttca ttgtcgatga
    14761 tatgaaagtc gaaaccgttg ttagcggcga tctggtccag atcccgtcgc acaggaacgt
    14821 tgtgtctcag catgattagc ctccccaatg cccacgggcg ctggaagaac gaccatagcc
    14881 gccgcgcgaa acggttgacg cttttttggt ggtaaagccg cctgaagagt aagactcttt
    14941 tttgccagaa ccggagcgcc aggagtaatc accggaagtg ttgagccaga cggggcggga
    15001 agcaaatgag gatccgccgc tgttatagac gaacggctca tcgcgatctt tacgaataac
    15061 ccggcttaac aaaaatccag aaacgaccgg gatccaactc tgttcaacat tgtcgtagta
    15121 gcaattttcg tacttagact gacaattctg ctgagtcata ttcttcggaa catcggcata
    15181 aaatgccgct ttggcgttgt tccagccacg cgcgcaaatg tcggcattat taccgtcatc
    15241 aatacaatcc tgcactgtcg aataaaacgt tccgtcgccg tcgttatcga catcgccact
    15301 atcgccacaa cctttcaata caaaaaaagc ggcaccgccc attagcgcca acgttaagta
    15361 tttttgtgcg tagcgattgc gacgcggttc aaaaggatta ttcggtctac caatgcgact
    15421 gatcgctccg tgaccaattt tactgttatt tcttgatttg cgttttctgg ccatgatcgt
    15481 ccattaccat gtcatacaag ctgcgttaaa aataccgcca gccagcgcgg cggttcccat
    15541 aaacattcct gctgcggtat tgtgattaat aattttttcg cttaatgcgg gcatataaag
    15601 tctgacacca gcaaaaacga gtaactgaat caccagtgca atcccgcccc aggcgaaata
    15661 gtctggaata ctcaccgcat tgattgccgc actggataag gggatcacgt aacccaacaa
    15721 tgtaccgctg aatgccagtg acaccgcggt attattgttt ttgattaatt gccattcgtt
    15781 gtgcggtgta attttggagt agataaacag aaaaataatc accatagcca cgccaataaa
    15841 aaaataggca ctaaaggcaa gaagtgaatc cagtatatgc attgtaaacg tccttgtaat
    15901 taaccaataa tatgaagtga tgtcagcggg atatcgacac ccaacgcgcg cgaaaataac
    15961 cactctggct cgccgagatc gttaaaagat tcctcaccat ttaacagtaa atattcgtaa
    16021 gtatcttcgg ttacttgccg ctggtagccc atggtaaaat tatggacctc ccatttggca
    16081 tggttttgat tttctacttt ttccagcatg tagacgggtt cgatatttcc cggttcttcg
    16141 ctgttaaaaa atcgctgcca gcgtttttcc tgccagttta aggtcattgc ccccatcgtt
    16201 ttggcgttga tcgcctcgcg ccagtgactc tctttactga taccgtagct ctcttcatag
    16261 acaaagagct tgatatcatc aatgtcatca atatcttcgc cgccggtggt attgatttgc
    16321 agaaattcat cgcctgaagt gtagtaacgg aaaatctggc taccgcctcc cagatcgatg
    16381 cggctgacag cggctaccgt aaattcctca cccggtagcg caatcagcaa ttcatcttcc
    16441 agcaaacgaa acgctaacgt gtcgagcgta aagccactat tgagatgaag tcccagcgga
    16501 ccgcgagcga tagcaggctt attatccttg ccaaacagac gctggaaaaa accagacata
    16561 ttttatcctt aaaatagttg ccagcctttt agcgaggctg gcaaaaaaat tactcgccct
    16621 gttggcgttg cagtcttgct aatacatcct gggctctact tttattgcta ccgccaattc
    16681 cggcttccgc cagcttttcg tcaaggtcgc gaccgtctgc gactttctcc aactgtgcgg
    16741 cagcatccag gcgagcctga cgttcggcct gacgcgtttg caggcgtttt aaggattctg
    16801 ccgctgtcga aacgctggaa gatgcgccaa cggtagaggt tgttacagcc tgttgtgcac
    16861 gctgcatggc ttcagtggct ttaacgactt ccatttgctg ctcaaactga gcgatacgct
    16921 gcgctgtcgc tgtaactgct ttttccacgc catcacggga gacttccaga ttcgacaaca
    16981 cttgctcttc agcggtaatg agattctcaa ggcgcgcgat ttcttcagca acttcgttaa
    17041 tcaacgacgg attaacgttc ttgcttaacg cttccagcgc acgggcttcc agactggctt
    17101 tgcgctcacg taaatctttc agcttatcgt gacttaattt cacccgcgcc agcagatcaa
    17161 cgcgagattt tccggcttta tcgagttcag ctttagcgtc acgaatatgc tgttccagca
    17221 tgcgcacgcc ctgggtttct tcaatggatt cttccgcctg ggagataaac gatttcccca
    17281 gcgtaaataa actttttaaa attcccataa atacccgtcc ttgtaattag tgtgaatatt
    17341 cttctgtaat ttcagccaga tccaatgcgt tatctaccag ctaggttatc tcaagcagga
    17401 tatcttcaag agaagattta agcgataacg ccccgaaaac aatgtaatac tcttcctgtt
    17461 gcacgctgga gattcctacc gatgacaacg gcatcatctt ctga
//
LOCUS       DAJVUY010000082        17502 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.082, whole genome shotgun sequence.
ACCESSION   DAJVUY010000082 DAJVUY010000000
VERSION     DAJVUY010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17502
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.082"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..321)
                     /locus_tag="OQQ72_002462"
     CDS             complement(<1..321)
                     /locus_tag="OQQ72_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor (BI)-1/YccA family protein"
                     /protein_id="HCS2012151.1"
                     /translation="MESYSQNSNKLDFQHETRILNGIWLITALGLVATAGLAWGAKYL
                     EITATKYDSPTMYVAIGLLLVCMYGLSKDINKINAVIAGVIYLFLLSLVAIVVASLVP
                     VYAII"
     gene            complement(527..1231)
                     /locus_tag="OQQ72_002463"
     CDS             complement(527..1231)
                     /locus_tag="OQQ72_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS2012152.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ72_002464"
     CDS             complement(1368..1820)
                     /gene="moaE"
                     /locus_tag="OQQ72_002464"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HCS2012153.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFAGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ72_002465"
     CDS             complement(1822..2067)
                     /gene="moaD"
                     /locus_tag="OQQ72_002465"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HCS2012154.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ72_002466"
     CDS             complement(2060..2545)
                     /gene="moaC"
                     /locus_tag="OQQ72_002466"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HCS2012155.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARITGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ72_002467"
     CDS             complement(2548..3060)
                     /gene="moaB"
                     /locus_tag="OQQ72_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HCS2012156.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ72_002468"
     CDS             complement(3082..4071)
                     /gene="moaA"
                     /locus_tag="OQQ72_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HCS2012157.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF
                     GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(4059..4203)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ72_002469"
     CDS             4468..5376
                     /gene="yvcK"
                     /locus_tag="OQQ72_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HCS2012158.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ72_002470"
     CDS             complement(5568..7589)
                     /gene="uvrB"
                     /locus_tag="OQQ72_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCS2012159.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ72_002471"
     CDS             complement(8168..8845)
                     /gene="bioD"
                     /locus_tag="OQQ72_002471"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS2012160.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ72_002472"
     CDS             complement(8838..9593)
                     /gene="bioC"
                     /locus_tag="OQQ72_002472"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HCS2012161.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ72_002473"
     CDS             complement(9580..10734)
                     /gene="bioF"
                     /locus_tag="OQQ72_002473"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS2012162.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ72_002474"
     CDS             complement(10731..11771)
                     /gene="bioB"
                     /locus_tag="OQQ72_002474"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HCS2012163.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ72_002475"
     CDS             11858..13147
                     /gene="bioA"
                     /locus_tag="OQQ72_002475"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HCS2012164.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            13206..13682
                     /locus_tag="OQQ72_002476"
     CDS             13206..13682
                     /locus_tag="OQQ72_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HCS2012165.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            13834..15117
                     /locus_tag="OQQ72_002477"
     CDS             13834..15117
                     /locus_tag="OQQ72_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HCS2012166.1"
                     /translation="MNTFSVSRLALALAFSVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(15258..17495)
                     /locus_tag="OQQ72_002478"
     CDS             complement(15258..17495)
                     /locus_tag="OQQ72_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HCS2012167.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAIIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         4092 a         4733 c         4442 g         4235 t
ORIGIN      
        1 gataatggca tatacaggaa ctaaacttgc aacgacaatc gccaccaaag agagtaaaaa
       61 cagatatatt acgcctgcga tgacggcatt tatcttgttg atatccttac ttaagccata
      121 catacaaact aataataacc ctatggcgac atacattgtt ggtgaatcat atttggttgc
      181 cgtaatttcg agatacttag ctccccaggc cagtcctgcg gttgccacca aacctaaagc
      241 ggtaatgagc catataccgt ttaatatcct ggtctcgtgc tgaaaatcta atttattgct
      301 gttttgtgag tatgattcca ttcttttagt tgtccttaga aaaaatatta atattcacca
      361 tcaataaatt taaacccacg catacaaaat acttttgtat ttatggatac ggaaaacgct
      421 tccgctcggc cataaggcgt attttatacc tggtacttgt taagtgtcgt ttttagtaag
      481 aaaagaaatc ccgacacatg gccgggatat tgatggtgaa aaagaattaa cggcggttgc
      541 caaaaattcg cagcaacatc aggaacaggt tgatgaagtc cagatacaag gttaacgcgc
      601 caagaatgga atatttgcgc aggttcgacg tgtcgcgggt atcaatctgc tcacccatat
      661 ttttcaattt ctgagtgtca tacgccgtca atccgacaaa gacaatcacg ccgatgtagg
      721 taactgccca catcaatgct tcgcttttca gccagaagtt gaccagcgat gccagcacaa
      781 tgccgattaa cgccataaac agcatattgc caaagccact taaatcgcgc ttcgtggtgt
      841 aaccgtacag gctcattgcg ccgaacatcc cggcagtaac gacgaaagta ctggcgatag
      901 aagcagcggt atagacaatg aatatactgg aaagcgtaag acccgtcagc gccgaataaa
      961 gcataaagag catcgtcgtt acacctgcgc tcagcttttg aatcatcgct gataacacaa
     1021 taaccaatgc taattgcgcg atgatcagac cgattaaaaa gacacggtta gtgaacaaca
     1081 gctccatcac ggccgcggaa ttagccgcat accaggcaac aaatgcggtc agcaacaagc
     1141 caacggtcat ccagccatag acttgcgcca tataagtttg caagccagcc cggggttgta
     1201 cgattgaatc agaacgtggg aatctgtcca tgacgatctc ctgaagatat aaggaatatc
     1261 ttaaggatac tgcaaaatga tgaggctgtg catcgacgca gcgtaaacgc atgtactgag
     1321 cggtgaaatt gccggacgca gcggtgcctt atccggctaa caaaaaacta ccagcgtttt
     1381 gccgcctgct gatcgctctc ccgagcttca acccagcggt cgccttccgg cgtggcttcg
     1441 cgcttccaga acggtgcgcg ggttttgaga taatccataa taaactgccc ggcttcaaac
     1501 gcactgctgc gatgcgcact ggtgacaccg gcaaaaacga tttcatcgcc cggccataat
     1561 tccccgatgc ggtgaatcac agtgacgcgc cccagcggcc agcggttacg cgcttcatca
     1621 acaatttctg ccagtgcttt ttcagtcatt cccggatagt gttcgagggt taatgctttg
     1681 acgctgtcgc ccaggttatg gttgcgcacc ttaccagtaa aggtgactac cgcaccgtct
     1741 tcgtcacgct ccgccagcca cgggtactct tctcctacgc tgaacggctg cggaccaaca
     1801 acaattttgg tttctgccat cttaacctcc ggttaccggc gggaagaaag ctacttcgtc
     1861 gccgtcagtc agcggatggt caaaactcac cagcgtctgg ttgacggcag ccagtaattt
     1921 gccatcttcc agcgccagcg cccagcgatc gctctgcgca gccatgtgct ggcgtaacgc
     1981 ttcaacagtt gggaaatccg cagccacttc ggttgcatct gttcccacca actcgcgcac
     2041 ctgcgcgaaa aaaagaactt taatcatccg cttccacctt aaagtcaccc gacttgccgc
     2101 cgctcttcgc cagcaaacgt accggaccaa tcaccatatc tttttgcacc gctttgcaca
     2161 tgtcataaat ggtcagcgcc gccacggagg ccgcggttaa tgcttccatt tcgacaccgg
     2221 ttttcccggt caggcggcat aaggtttcta tacgcacccg attgtgctcc ggctcggcct
     2281 gtaaattgac ttcaactttg ctgagcatca gcggatgaca gagcgggatc agatcccagg
     2341 tgcgttttgc cgcctgaata ccggtaatac gcgcagtggc aaatacgtcg cctttgtggt
     2401 ggcgaccatc aataatcatc gccagcgtct cgctgcgcat ggtgacaaag gcttccgccc
     2461 gcgcttcacg cacggtttcc gctttggcgg agacatccac catgtgcgct tcgccagcgg
     2521 cgttgatatg ggtcagttgc gacatactta tttcttcaaa tgtggatgga aattacacgg
     2581 acgcgtacgg gcatccagct gcggcgcgat gatattttcc catgcggtac ggcacgcttt
     2641 ggtcgaaccc ggcatggcga aaatcagcgt tttgttggcg acgcccgcaa ccgcacgaga
     2701 ttgcaacgtg gaagtgccaa tctcttcaaa cgacaacatc cggaacactt caccaaaacc
     2761 ttcaacttca cggtcgaaca acggcagcaa tgcttcggga gcctgatcac cttccgtcag
     2821 gccagtacca cccgtaatca ataccacttg tacatcgtcg ctggcgatcc acgcagatac
     2881 ctgagcgcga atagcgtagc ggttttcttt cacaatggct ttatcgacaa cgtgatggcc
     2941 cgcttcttgc gccgaatcgc gcagatagtg accggaggta tcgtcttctt caccgcgacg
     3001 attagaaacc gtaagaatag caatacgggt cgggataaat tcagtgctta cctgactcat
     3061 ctgatctctc cttttgacgt tttagccgcc aatgtacgat aagttttgcg taataccggt
     3121 gttgttttga tgcaggaaat gggtctgttt cttctcccgc agcgccgctg aaatacgcgc
     3181 ttccagcgcc tgttgctggg tatcgtcttc cagcagatcg cgcaggttaa cgccgccttc
     3241 accaaacagg cagagatgga gtttaccaat ggaggaaacg cgcaggcggt tgcaagtggc
     3301 gcagaagtct ttttcatacg gcatgataag gccaatctct ccggcgtaat ctggatggca
     3361 aaagacttgc gcgggaccgt cgctgcgttg acgtaattgg tggatccagc cgcgacgcag
     3421 tagctcgtca cgcagaacct gaccagagat gtgatgctta cggaagagct cgctgccctc
     3481 gcccgtttcc atcagttcga tgaaacgcag ctggataggg cgatgctgga tccagttcag
     3541 aaaggtgtcg agctggtgat gattaacatc acgcatcagc acggtattga ctttgacctt
     3601 ctcaaaaccg gcctcaaatg cagcatcaat ccctgccatg acctggttga atttatcctg
     3661 cccggtaata gcgtgaaact ggcgggcgtc cagactgtcg acactgacgt taatgccagt
     3721 aagtcccgca tcgcgccagt tcgccacatc gcgttccaga cggtaaccat tggtggtgac
     3781 cgcaatctgg cggatagcgt cgttttcccg cacagcggcg atgatatcgg taaagtcgcg
     3841 gcgtaaagac ggctcacctc ctgtcaggcg cactttttcg gtgcccagac tggcgaaggc
     3901 gcgcgtaacc cggcgaattt catcgacggt aagaaagcct ttattggtga cgccgctcgg
     3961 tttgtagcca tccggcaggc agtaggtgca acgaaagtta cacacatcgg taatcgacag
     4021 gcgcaagtag taaaacttac gcgcaaatgc atcagtcagt tgtgaagcca tgtacacctt
     4081 tccagatacg ggaggcgaag tcatttcttc cttcgccctg gtggcaatct ttacgagcat
     4141 tgtcacggcc aaagcaccgt atcagttgac ccaggtgcag aggctagagt gtttagtggt
     4201 taagccgata ctagcgtgta aatgagattt ttaccatcca cactttcgct atgcaatcat
     4261 gtatatagcg tcatgatcgt gctatttcgc tacagaataa gggaaaatgg cagttttact
     4321 ttgatataca tcatcaggga ggcatagcgt gcatcgtcct ttagaggtag aagaaaatag
     4381 tttgtatcct caatattggc aggttaattg ctgtttcccc gcaatttgcg ctactgtagc
     4441 gcggataatc tgactccagg aaactatatg cgcaatcgta cgctggctga tcttgatcgt
     4501 gtcgttgctc tcggcggagg gcatggactg ggacgcgttc tctcatcact ttcgtctttg
     4561 ggttctcgtt taacgggtat cgtcaccacc acggataatg gtggctcgac ggggcgtatt
     4621 cgccgttcag aaggcggcat tgcctggggc gatatgcgca actgcctcaa ccaactgata
     4681 acggaaccga gcgtcgcctc cgcgatgttt gaataccgtt ttggcggcaa tggcgaactt
     4741 tccgggcaca accttggaaa cttgatgtta aaggcgctgg atcaccttag cgtgcggcct
     4801 ctggaagcca tcaatttaat tcgtaatctg ctgaaagtgg atacgcattt gattccaatg
     4861 tcagagcatc ccgtcgatct gatggcgatt gacgatcagg ggcatgaagt ttacggcgag
     4921 gtcaatatcg accagttaac tacgccgatt caagagttat tattaacgcc gaatgtaccc
     4981 gcaacgcgtg aggcagttca cgctatcaat gaagcggatc tcatcattat tgggcctggc
     5041 agtttttata ccagcctgat gccaattctg ctgctgaagg aaatcgccca ggcattacgc
     5101 cgcacgccag cgccgatggt ttatatcggc aatctggggc gtgagttgag tttacctgcg
     5161 gctaatttga agctggaaag caagctggca attatggagc agtatgttgg taaaaaagtc
     5221 attgatgcgg tcatcgtcgg gccaaaagtg gatgtctcgg cggtgaaaga gcggattgtg
     5281 atccaggagg tactggaggc cagcgatatt ccgtatcgtc atgaccgcca gttgttacat
     5341 aacgcgctgg aaaaggcgtt acaggcttta ggttaacgga aatccgaagg aaaattccgg
     5401 cttcctattg aagacaaagt gcgcgttgtt tatgccggat gcggcgtgaa cgccttatcc
     5461 ggcctacaaa ccgcgcaaat tcaatatatt gcggagaaaa tgtaggcctg ataagcgtag
     5521 cgcatcaggc tgttttccgt ttgtcatcag tcttcttcgc tatcctgtta cgatgcggca
     5581 ataaacaact cacgcaactg atgcaactgg tcacgaattt gtgccgcttc ttcgaactcc
     5641 agattctgcg cgtgttgcat catcagccct tccagttcat ggattttctg ctgcaacgct
     5701 ttcggcgaca tatccatcgg cacattatcc ggctcaacaa tcgggcgcga ttttcctctg
     5761 cccttcgctt tggttttggc aatgttctgc cccagcgcca ggatatcgac cactttcttg
     5821 ttcaagcctt gcggcgtaat gccgtgttcc tcgttgtact tctgctgttt ctcacggcga
     5881 cgttcggttt cgccaatcgc tttcgccatt gatggggtga tcttatcgcc gtagagaatc
     5941 gctttaccgt taacgttacg tgccgcacga ccaatggtct ggatcaacga acgttcggaa
     6001 cgcaggaagc cttctttgtc agcgtcgagg atcgccacca gcgacacttc cggcatatcc
     6061 agaccttcgc gcagtaagtt gatccctacc agcacgtcga actcacccag acgcaagtcg
     6121 cggataatct ccatacgttc gacggtgtcg atatctgagt gaagataacg cacgcgctcg
     6181 ccatgttctt cgagatattc ggtaagatct tccgccatcc gcttggtcag tgtggtgacc
     6241 agtacgcgtt cgttaattgc cgctcgctga cgaatctccg aaagaagatc atcaacctgt
     6301 gtcgccaccg gccgcacttc gataatcggg tcaagcaatc cggttggacg caccacctga
     6361 tccaccacat cgccgccgga tttttccagc tcgtaattac ccggcgtcgc cgaaacatag
     6421 atggtttgcg gcgctaatgc ttcgaactct tcaaacttaa gcggacggtt atccagcgct
     6481 gatggcaggc ggaagccgta ctccaccagt gtctctttac gcgcccggtc accgcgatac
     6541 atgccgccaa tttgtggaat ggtgacgtga gattcatcga cgaccagcag cccatcggca
     6601 ggcaggtaat caaacagcgt cggcggtggc tcacccggtc cacgaccgga gaggaagcgc
     6661 gagtagtttt caatccccga acagtagccc agctcgttca tcatctccag atcaaactgg
     6721 gtacgctggg tcagccgctg ctcttccagc agtttgttgt tttccaacag cactttgcgt
     6781 ctggcggcca gttcttcttt gatctcctcc atcgcctgta cgatgcgctc gcgcggtgtg
     6841 acgtagtgcg ttttcgggta gatggtaaaa cgtggaatag tggaaacaat ctgcccggtc
     6901 agcgggtcaa ataacgacaa tcgttccact tcctcgtcaa acagttccac gcgaagtgca
     6961 atgtcatccg attctgccgg gaagatatca atcacctcgc cacgaacgcg gaaagtacca
     7021 cgctggaatg cttgatcatt acgagcgtat tgcagctccg ccagtcggcg cagaatcgcg
     7081 cgctgatcga taatcatacc gaccgtgaga tggagcatca tcttgagata taaatcagga
     7141 tcgcccagac cataaatcgc ggaaacagag gccactacaa ccacatcacg ccgctccagc
     7201 atcgctttgg tggcggataa acgcatctgc tcaatatgtt cgttaaccga ggcatctttc
     7261 tcaatgaaag tgtcggaact cggtacatag gcttccggct gatagtagtc gtagtaggag
     7321 acgaaatact ccaccgcgtt ttccgggaag aactctttca tttcgccata cagctgggcc
     7381 gccagcgttt tgttgggcgc aagtaccatg gttgggcgct gaaggtcagc aatgacattg
     7441 gcaatggtga aggttttccc tgagccagtc acgccaagta acgtctggtg cgccaggcca
     7501 tcttccagcc cctcttcgag acgtcgaatc gcctctggct gatcgccaga aggtttaaaa
     7561 gcggaattca gtttgaacgg tttactcatg agtcgctacc tgaaggagtt gggcgggcag
     7621 gtatgtaatt ttactcgtcg tacttaatta tgccaacaaa ttatactgga taaaaaaaca
     7681 gttcatcacc ataatatttc tgatacagcg taaactccgc tgtcaatcat gagcaaaatt
     7741 tactctgtgg cgagataaaa ctccggcctt accgggttat ccccaaagca acggcttttt
     7801 taacatttgt caagatgagt gatgacagtt ttatggcaag agatgcctgt tcagtgactg
     7861 ccattgcatt tatctaacca gttaaaaaat aaaagatatt tctttgagcc gtctttaacg
     7921 ccaattcgcg tgcaagccgc gtattctctc gcttgcctcg tgttttctaa ctctaataca
     7981 catggttatc cacaggaata gtggataact gtctccagcc cctatccccc gccgcctggg
     8041 caattcccac attcgccgca tgaggcggaa gtaaaatttt tttcgtgatt attttagaat
     8101 ttaattggtt aaattgcagt caatcgaaga cgcgatctcg ctcgcaattt aaccaaatac
     8161 agaatggcta caacaaggca aggtttatgt actttccggt tgccgcattt tctggatttt
     8221 ctgcaagcca ggggatctct cccagcagcg gcgcgggaat catgcgggtg agcgtggtca
     8281 tatattcagc gtgacgtttt cccggaggcg taacatcgtt cgccacccaa cccgccagag
     8341 tcagtccggc gtgttgtatt gcctgcgcag tcaacatcgc gtgattaata cagccgagtt
     8401 tcacaccaac taccagtatc accggcagtt gttcctgtgt tacccaatct gcaaaagtga
     8461 aagtgtcaga aagcggcgta aaccagccgc cagcaccttc cactaacacc cagtcagcct
     8521 gttgttcaag cgcgcgtaat ccggcgctca ttaccaatga ttctatcggc ctgccctctt
     8581 gcgcgctgat gatgtgcggc gaagtgggtt ctgcgaaggt gtaaggattt actgttgcgt
     8641 aatccagctg caggctgctg ttgtgctgta acgccagcgc gtcactatta cgtaagcctt
     8701 ccggggtctt ttcgctgcca gaggcgaccg gtttataacc tgccgtccga taacctactg
     8761 ccttcgcggc ttgtaaaagt gcacaactgg cgacggtttt ccccacttcg gtatccgttc
     8821 cggtgacaaa ataacgttta ctcacgagca atcactccca aaaaaagatg atacgtcaga
     8881 ggatatcgcc cctgttgttg cggccaggcc agttgcaatc gctgcaattg cgaacgcgtt
     8941 aatattcgcg ggtcgcgccc ttcatgaaga tgcgtagcac cgatgccttt cagcgaacgc
     9001 atggcactga gcgcatcatc aaaccatagt gtgatgggct gaatatgatg ttgataatgc
     9061 acgccgttca gcgactgttc gatttcatct ggcggtaaaa agcgattagc atgcggacgc
     9121 tcgtccaccg cctgccacgc ctgatgcagt tcgggtaacg atccctgcac cagcgtggta
     9181 aacgccacca cgcctccggg gcgcaccacc cgatacagct cgcggagtgc cgtggataaa
     9241 ttaccgcacc actgcaccgc gagattgctc catgcaagat cgaacgtcgc agtcgctaac
     9301 ggcagggatt cgatatctcc cgccagataa tggtctgcag catctttctg gcgggcttgc
     9361 acaagcattg gcggtgagag atctaacgcc gtcacctgtg cgtgacgctc tcgccagtgg
     9421 cggctcatcc agcctggccc acaccccgcg tccagtacgt gggtgtattt acgctgtggg
     9481 agcattgcca gtaagacgtc agcactccgg cgctgtaact ctgcgtgttg ctcatagtgc
     9541 gcggctgccc gaccaaatgc cgctgcaatg gcttgtttat taaccgttgc catgcagcac
     9601 ctccagcaga cggtcgatat cctgcatttc atgcgctgcg gttagcgtta agcgcagtcg
     9661 cgcagtacca gcgggtacgg ttggcgggcg aatcgccgtg acccagcagc cttgctggcg
     9721 cagtttttct gccagttgta acgcacggct gttatcaccg acgatcaatg gctggatggc
     9781 gctgcatgaa tcagcaagcg taaacggcaa atcctgtact ccggcacgaa aacgcgcaat
     9841 gagtgacacc agtttttcgc gccgtgcatc cccctcatca cggcgaatga ccgccagcga
     9901 cgcacgtaat gcctgcgcct gagcgggcgg catactggtg ttgtagataa ggtggcgggc
     9961 gaattgcagc agataatccg ccaccgtact ggagcaaagc accgctgccc cgctgacgcc
    10021 aaatcctttg ccaaaagtca ccaccagcaa ttctggtttt accttttgca gccagcagct
    10081 gccgcgcccc tgctccccga taacgcccgt gccgtgggca tcatcgacca tcaaccagcc
    10141 attgtgctgt tgcgttacct gctggatttc cgccagtggc gcactatcgc cgtccatgct
    10201 gaacacgcct tctgtcacca ccagttgctg ccccggacag ggggaagcaa gcagtcgcgc
    10261 cagatgagtg acatcgttat gaacaaaacg gcgaagctgc gacgggctta aactggcagc
    10321 ctccagcaat gaggcatggc taagccggtc agcgacaatg cggtcctctt ttgccatcat
    10381 cgcggcaatg accgcctgat tagcggcaaa accagagata aatagcagtg cccgcgaata
    10441 gcccagccac tcggccagtt cttcttccag cgcctgatgc gcaacgctat aaccgctgac
    10501 gtgaccggaa ccgccgctac cgacgccaaa ttgctccgca ccctgctgcc aggcacggat
    10561 aatttgcgga tgatggctta aacctaaata atcgttactg gaaaagttca gatactggcg
    10621 atcatccgcc accagccagc gtccggctcc ttgcgccact ggataacggc gacgcagggc
    10681 atcggcagca cgccgcgcat cgagcgccgc gttgattttc tcctgccagc tcatagtgct
    10741 gccgcgttgt aatattcgtc agtatccggg gtcatcagcg cctgttcaag acgttgctgt
    10801 tgttcgttat cccctgccag cacggcagtt tgctgcggat ttagccccag tttgcggaac
    10861 agttgcaggt ctttatcttc ttccggattc ggcgtggtca gcagtttgca accgtagaaa
    10921 atcgagtttg cgcctgccat aaagcacatc gcctgagtct gttcgttcat ctgctcgcgt
    10981 ccggcagaaa ggcgcacgta agaggtcggc atcatgatcc gcgcgaccgc aatggtgcga
    11041 ataaaatcaa aggcatcaac gtcatcgtta tcggcaagcg gcgtgccttt caccttcacc
    11101 agcatgttga ttggcacgct ttccggcggc gtcggcaggt ttgccagttg cagcaataat
    11161 ccggcgcgat cttttaccgt ttcgcctaag cccacaatgc cgccagaaca gactttgatc
    11221 ccggcatcgc gcactttttc cagcgtatcg aggcgttcct gataagtgcg ggtggtgatg
    11281 atattgccgt aaaactccgg cgaggtgtcg aggttgtggt tgtagtaatc cagcccggcg
    11341 ttcgcgaggc gctgcgcctg agattcactc aacgtgccca gcgtcataca cgcctccagc
    11401 cctaaatctt ttaccccctg caccatctgc tccaggtacg gcatatcgcg ttcgttggga
    11461 ttcttccacg ccgcgcccat gcaaaaacgc gtcgatcccg ccgctttcgc tttgcgcgcc
    11521 gactccagca cctgttcaac ttccatcaac cgctcggctt ccagaccggt tttatagcgc
    11581 gagctttgcg ggcaatattt gcaatcttcc gggcaagcac cggttttaat cgacagcaac
    11641 gtgctgacct gcacctgacg aggatcgaaa tgctggcgat gcacctgctg cgcttcaaac
    11701 agcagatcca gcaacggttt ttcaaataat tctgcgactt gcgacaatgt ccagcgtggg
    11761 cggtgagcca tggggcttct ccaaaacgtg ttttttgttg ttaattcggt gtagacttgt
    11821 aaacctaaat cttttcaatt tggtttacaa gtcgattatg acaaaggacg atcttgcctt
    11881 tgaccaacgc catatctggc acccatacac atccatgacc tccccgctgc cggtttatcc
    11941 ggtggtgagc gccgaaggtt gcgagctgat tttgtctgac ggcagacgcc tgattgacgg
    12001 tatgtcgtcc tggtgggcgg cgatccacgg ctacaatcac ccgcagctta atgcggcgat
    12061 gaagtcgcaa attgatgcca tgtcgcatgt gatgtttggc ggtatcaccc atgcgccagc
    12121 cattgagctg tgccgcaaac tggtggcgat gacgccgcaa ccactggaat gcgtttttct
    12181 cgcggactcc ggttccgtag cggtggaagt ggcgatgaaa atggcgttgc agtactggca
    12241 agccaaaggc gaagtgcgcc agcgttttct gaccttccgc aatggttatc atggcgatac
    12301 ctttggcgcg atgtcggtgt gcgatccgga caactcaatg cacaacctgt ggaaaggcta
    12361 tctgccagaa aacctgtttg ctcccgcccc gcaaagccgc atggatggtg aatgggatga
    12421 acgcgatatg gttggctttg cccgcctgat ggcggcgcat cgtcatgaaa tcgcggcggt
    12481 gatcattgaa ccgattgtcc agggcgcagg cgggatgcgc atgtaccatc cggaatggtt
    12541 aaaacgaatc cgcaaaatgt gcgatcgcga aggtatcttg ctgattgccg acgagatcgc
    12601 caccggattt ggtcgtaccg gcaaactgtt tgcctgtgaa tatgcagaaa tcgcgccgga
    12661 cattttgtgc ctcggtaaag ccttaaccgg cggcacaatg accctttccg ccacactcac
    12721 cacgcgcgag gttgcagaaa ccatcagtaa cggcgaagcc ggctgcttta tgcacgggcc
    12781 aacttttatg ggcaatccgc tggcctgcgc ggctgcaaac gccagcctgg cgattctcga
    12841 atctggcgac tggcagcaac aggtggcggc tattgaagta cagctgcgcg agcaacttgc
    12901 ccccgcccgt gatgccgaaa tggttgccga tgtgcgcgtg ctgggggcaa tcggcgtagt
    12961 cgaaacaact cgtccggtga atatggcggc gctgcaaaaa ttctttgtcg aacagggggt
    13021 atggatccgg ccttttggca aactgattta cctgatgccg ccctatatta ttctcccgca
    13081 acagttgcag cgtctgaccg cagcggttaa ccgtgcggtg caggatgaaa catttttttg
    13141 ccaataacgg gaagtcagcg tgtgggtttc tggctacact ttctgcaaac tagaaaggag
    13201 ggttcatgaa actcatcagt aatgatctgc gcgatggcga taagctgccg catcgtcatg
    13261 tctttaacgg catgggttac gatggcgata atatttcacc gcatctggcg tgggatgatg
    13321 ttcctgcggg aacgaaaagt tttgttgtca cctgctacga cccggatgcg ccaaccggct
    13381 ccggctggtg gcactgggta gttgttaatt tacccgctga tacccgcgta ttaccgcaag
    13441 ggtttggctc tggtctggta gcaatgccag acggcgtttt gcagacgcgt accgattttg
    13501 gtaaaaccgg atacgatggc gcagcgccgc cgaaaggcga aacccatcgc tacattttta
    13561 ccgttcacgc gctggatgta gagcatattg atgtcgatga aggagccagc ggcgcgatgg
    13621 tcgggtttaa cgttcatttc cactctctgg caagcgcatc gattaccgcg atgtttagtt
    13681 aatcactctg ccagatggcg caatgctatc tggtatcact taaaggtatt aaaaacaact
    13741 ttttgtcttt ttaccttccc gtttcgctca agttagtata aaaaagcagg cttcaacgga
    13801 ttcatttttc tatttcatag cccggagcaa cctgtgaaca cattttcagt ttcccgtctg
    13861 gcgctggcat tggcttttag cgtgacgctg accgcctgta gctcaacacc acccgatcaa
    13921 cgtccttctg atcaaactgc gcctggtacc tcttctcgcc cgattctgtc ggcaaaagaa
    13981 gcgcagaatt tcgatgctca acactatttt gcatccctga caccaggtgc tgcagcgtgg
    14041 aatccttccc cgattaccct gcctgcgcaa cctgactttg ttgtcggccc ggcgggcact
    14101 caaggtgtaa cgcataccac gattcaggcg gcggtagatg cggcaattat caagcgtacc
    14161 aacaagcgcc agtatattgc cgtgatgcct ggtgagtatc agggaacggt gtatgtccct
    14221 gctgctccgg gtggaattac tctgtacggt acaggtgaaa aaccgattga tgtgaagatt
    14281 gggctttccc ttgatggggg catgagccct gccgactggc gtcacgacgt caacccgcgc
    14341 ggcaaatata tgccaggtaa accagcgtgg tatatgtacg atagctgcca gagcaaacgc
    14401 agcgacagta tcggtgttct ctgctctgcg gtcttctggt cacaaaacaa tggcctgcaa
    14461 ctgcaaaacc tgaccatcga aaacacgctg ggcgatagcg tagatgcagg taaccatccg
    14521 gcggtggcac tgcgtactga tggtgaccag gtacagatta acaacgttaa cattctcggt
    14581 cgtcagaaca ccttctttgt caccaacagc ggtgtgcaga accgtctgga aacgaatcgt
    14641 cagccgcgta cgctggtgac caacagctac attgaagggg atgtggatat cgtttctggt
    14701 cgcggcgcag tggtgttcga taacaccgaa ttccgcgtgg tgaactcacg tactcagcaa
    14761 gaagcgtatg tgtttgcacc ggctacgctg tccaacattt actacggttt cctcgccgta
    14821 aacagccgtt tcaatgcttt cggtgatggt gtggcgcaac tgggccgctc gctggatgtt
    14881 gatgccaata ccaacggtca ggtggtgatc cgtgatagcg ccatcaacga aggttttaac
    14941 acggctaaac cgtgggccga tgcggtgatc tctaatcgtc cgtttgcggg taataccggc
    15001 agcgtagatg ataacgacga aatacagcgc aatctgaatg acactaacta caaccgcatg
    15061 tgggaataca ataaccgcgg cgtgggtagt aaagtggttg cagaggcgaa gaagtaagag
    15121 caattaacta tttgccggat gcggcgtaaa cgccttatcc ggcctacggt tcgatgcgat
    15181 ttgtaggtcg gataagatgc gcaagcatcg catccgacaa taagtgccga atgcgaccta
    15241 cattcacatg gcgcttttta catctgacgg tttttattga agttaatcaa actacccgcc
    15301 ttgataatct cgcgctcttc agcagtcaga ctttccatat agagcgtaat ttccgttacc
    15361 ggcgcatctt catggatcac ataaccttta aacgtcgtac ccggattatc cagcgccgct
    15421 ttaatgccag ggatgtaaat gtaatccccc acttcaaagg ttggcacttc cgccatctgc
    15481 agcggtaaca tcccccagtt gatgacgtta gaacggtagc gtttagtcgc gtactcttcg
    15541 gcaatattcg ccagaccgcc aatcacacgc tggcagctcg ccgcctgttc acgcgcagaa
    15601 ccatcgcctg gtttcaccgc atataccatg ctgccaattt cagtttgcag cggatcaata
    15661 tgctcctgac cagcaatctg cttaatgcgc gcaaacacct ctgtcagctc gctgacattc
    15721 cccgccagac gctgattttc cagctcagca gtcgctttac ttctgccaac ataaccggga
    15781 tcgcggcgtg acagggtaaa ctccgccaga ccaatcggat ttgaacgata agaagaggtt
    15841 tcaccggaag gaatcagttc gtcggtggtg gtcacttcgt cgaggatctt cgagcacact
    15901 ttcaggacga tattgtcagt cagcgcaccc aattccggcc agtctttaat gttcggtccg
    15961 taaatcagcg gttgctgagt tgcccctttc acaaagccct gataaacacg gtttttatac
    16021 ggcgttacat cgaaggcgta ctccggcacg ttgtcccagc aatcaagttc gctggcagag
    16081 gttaaatagc caccgtttgc cgcagtcgca gcgatagaac gagcgtccat caacgccacc
    16141 gctgacatct gcccattagc tggcttagag ccttcgcggt tcgggaagtt acgcgtggtg
    16201 tggcgaatac ttaatccgtt gttgattggc gtatcgcccg cgccaaagca tgggccgcag
    16261 aacgcggttc tgatgattgc gcctgcgcca atcaaatctg ctaccacacc ttttttggct
    16321 aaatccataa acaccggctg tgatgacggg taaaccgcca gcgagaaggt gtcattgcca
    16381 caggattgac cgcgcagtgc attcgccgcc gcgatgacgt tttcgtagtt accgccagaa
    16441 cagcccgcga taatcccctg ctgcactttc aggcgaccat tttccacttt atccagcagc
    16501 gagagtttgg ctttaccgtg cgccacgcgt tcggactcaa tttcaatctc acgcagaatg
    16561 tcggtcaggt tctggttcag tgtgtcgatt tcatacacgt tgctcgggtg gaacggcagc
    16621 gcaatcattg gtttgatggc gcttaaatca acgctgatgc agccatcgta gtacgccatc
    16681 ggttgagggt taagctggca gtaatcctgg ccgcgaccgt gcagcgccag ccagttatgc
    16741 acttcttcat cagtttgcca gacggagctt aaacaggtgg tttccgtggt catcacgtca
    16801 acgctgttac ggaaatcggt agagagcgcg ctaacgcccg gtccaacgaa ctccatgact
    16861 ttgtttttga cgtaaccgtt tttgaacacc gcgccaatga tagccagcgc cacatcctgt
    16921 ggccccacat acggcgcagg ttttccggtc agatgcaccg caaccacgcc cggatagtcg
    16981 atatcccagg tgtcattaag cagctgtttt accaactcac cgccgccctc accgactgcc
    17041 attgtcccta atgcaccgta acgggtgtgg ctgtctgacc cgaggatcat tttgcccccg
    17101 cctgccatca tctcacgcat atattgatgg atgatcgcaa tatgcggagg cacaaaaata
    17161 ccgccataac gctgagctgc cgataaacca aaaacatggt catcaccgtt aatggtgccg
    17221 ccgacggcgc agagtgagtt atggcagttg gtcagcacat acggcagcgg gaaacgttcc
    17281 attccggacg ctttagcggt ctgtacaata ccaacaaagg taatatcgtg agaggctaat
    17341 gaatcaaact taattttaag tttatccata tttccggacg tattatgaga agagagaata
    17401 gaccaggcaa tagtgccttt tttggcttct tcttttttaa tttcgccggt gaaatgttct
    17461 tcggcaatta tttcgttatt actggcgaga aacacgcctt tt
//
LOCUS       DAJVUY010000083        17496 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.083, whole genome shotgun sequence.
ACCESSION   DAJVUY010000083 DAJVUY010000000
VERSION     DAJVUY010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.083"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..642)
                     /locus_tag="OQQ72_002479"
     CDS             complement(<1..642)
                     /locus_tag="OQQ72_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HCS2012168.1"
                     /translation="MSLNFTVIVWLRLSIGGVYELAFCRSSLKSKKYFIILLALAAIA
                     GLGTHAAWSSNGLPRIDNKTLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKG
                     TQDARELGNAFSADIPDFDLYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAI
                     KDLQSKAPDKNIVIFTHNHCLTYIAKNKRDATFKPDYLDGLVMHVEKGKVYLDG"
     gene            893..2032
                     /gene="arnB"
                     /locus_tag="OQQ72_002480"
     CDS             893..2032
                     /gene="arnB"
                     /locus_tag="OQQ72_002480"
                     /EC_number="2.6.1.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024188371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4-deoxy-L-arabinose
                     aminotransferase"
                     /protein_id="HCS2012169.1"
                     /translation="MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQ
                     LTGNQHAIAVSSATAGMHITLMALEIGKGDEVITPSLTWVSTLNMISLLGATPVMVDV
                     DRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVG
                     TYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDR
                     QTWGRAPQAEVLTPGYKYNLTDINAAIALTQLAKLEHLNTRRREIAQQYQQALAALPF
                     QPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYR
                     ERFPTLSLPNTEWNSERICSLPLFPDMTTADADRVITALQQLAGQ"
     gene            2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ72_002481"
     CDS             2036..3004
                     /gene="arnC"
                     /locus_tag="OQQ72_002481"
                     /EC_number="2.4.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate
                     4-deoxy-4-formamido-L-arabinose transferase"
                     /protein_id="HCS2012170.1"
                     /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL
                     LIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDAD
                     LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG
                     CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI
                     NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV
                     LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE"
     gene            3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ72_002482"
     CDS             3004..4986
                     /gene="arnA"
                     /locus_tag="OQQ72_002482"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HCS2012171.1"
                     /translation="MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGS
                     VAHLAAERGIPVYAPDNVNHPLWVERIAQLSPEVIFSFYYRHLICDEILQLAPAGAFN
                     LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRVAIAPDDIAIT
                     LHHKLCHATRQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLH
                     NMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEI
                     VTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTER
                     LLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI
                     ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN
                     LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGS
                     SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG
                     NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR
                     NAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS"
     gene            4983..5873
                     /locus_tag="OQQ72_002483"
     CDS             4983..5873
                     /locus_tag="OQQ72_002483"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HCS2012172.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ72_002484"
     CDS             5873..7525
                     /gene="arnT"
                     /locus_tag="OQQ72_002484"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HCS2012173.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ72_002485"
     CDS             7522..7857
                     /gene="arnE"
                     /locus_tag="OQQ72_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HCS2012174.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ72_002486"
     CDS             7857..8243
                     /gene="arnF"
                     /locus_tag="OQQ72_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311173.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnF"
                     /protein_id="HCS2012175.1"
                     /translation="MGLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG
                     LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS
                     LKALLGVACIMSGLMLIFLPTTKQRY"
     gene            complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ72_002487"
     CDS             complement(8237..8503)
                     /gene="pmrD"
                     /locus_tag="OQQ72_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416762.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein PmrD"
                     /protein_id="HCS2012176.1"
                     /translation="MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGD
                     LLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCTAAGKTQ"
     gene            complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ72_002488"
     CDS             complement(8613..9968)
                     /gene="menE"
                     /locus_tag="OQQ72_002488"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HCS2012177.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ72_002489"
     CDS             complement(9965..10927)
                     /gene="menC"
                     /locus_tag="OQQ72_002489"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCS2012178.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELLQMPSIAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ72_002490"
     CDS             complement(10927..11784)
                     /gene="menB"
                     /locus_tag="OQQ72_002490"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HCS2012179.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ72_002491"
     CDS             complement(11799..12557)
                     /gene="menH"
                     /locus_tag="OQQ72_002491"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HCS2012180.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDEVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRVGHNAHRENPAGVIASLAQILRF"
     gene            complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ72_002492"
     CDS             complement(12554..14224)
                     /gene="menD"
                     /locus_tag="OQQ72_002492"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HCS2012181.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGVGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL"
     gene            complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ72_002493"
     CDS             complement(14313..15608)
                     /gene="menF"
                     /locus_tag="OQQ72_002493"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HCS2012182.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ72_002494"
     CDS             complement(15687..15992)
                     /gene="elaB"
                     /locus_tag="OQQ72_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HCS2012183.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(16047..16508)
                     /locus_tag="OQQ72_002495"
     CDS             complement(16047..16508)
                     /locus_tag="OQQ72_002495"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS2012184.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ72_002496"
     CDS             16573..17490
                     /gene="rbn"
                     /locus_tag="OQQ72_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HCS2012185.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
BASE COUNT         4113 a         4699 c         4437 g         4247 t
ORIGIN      
        1 cccatccaga taaactttgc ctttttccac atgcatgact aaaccatcca gataatcagg
       61 tttaaatgtc gcatcacgct tatttttagc aatatatgtc aggcaatgat tatgggtgaa
      121 aataacgata tttttatcag gcgctttgct ttgtaagtcc ttaattgcac tataaatctc
      181 attaccgcac tgaagaagtc gtttatctac cgtcagcttt ttacccgcgg aaaaccaggt
      241 cgccgactga atggtccgga cggtattact ggaataaaga tcgaaatcag ggatgtcagc
      301 gctaaaagcg ttgcccagtt cacgggcatc ctgggtacct ttaaccgtaa tacctgtttt
      361 atctgacaag cattgattgg ttgaacgatc gcaacgttca gcatggcgaa acaaaacgac
      421 aaccgggtgc tgctgtgcca gtctggccaa tgttttattg tcgatacgtg gcaaaccatt
      481 gctactccag gcggcatgag tacccagtcc ggcaattgca gcgagcgcca gtaaaatgat
      541 gaaatatttt tttgacttca atgatgagcg gcaaaaagct aactcgtaaa ctccacctat
      601 agacaagcgc aaccagacaa ttaccgtgaa attgagcgac atttctggcg ataattagca
      661 gttggtgtaa tattaaaaat cctacgatgt cggcaaaatg cctcaaaatt ttgccaaatg
      721 caaagcctaa ataagaaaaa atataaaaat ttcaatattt acgtctaata ttagtttctt
      781 aaggttaagt taatattcta tccttaaaat ttcgttccaa atggcaaaat atacacaaca
      841 ctctttatag caaatataag tggacaggta ttcaatggcg gaaggaaaag caatgtcaga
      901 atttttgcct ttttcgcgac cagcaatggg cgtggaggaa ctcgctgcag ttaaagaagt
      961 tctcgaatcc ggttggatca caaccggtcc gaagaatcag gcgcttgagc aagccttttg
     1021 ccagttgacg ggaaatcagc atgccatcgc ggtcagttca gccaccgccg gaatgcatat
     1081 cacgctaatg gcgttggaaa ttggcaaggg cgatgaagtg attacgcctt ccctgacctg
     1141 ggtttcaacc ctcaatatga tttccttgtt gggtgcaacg ccggtaatgg tggatgtcga
     1201 ccgcgatacg ctgatggtca cgcctgaagc gatcgagtca gccattacgc cacgcactaa
     1261 agccatcatt ccggtgcatt atgccggtgc gccagcagat attgacgcca ttcgcgccat
     1321 tggcgaacgt tacggcatcg cagttatcga agatgctgcc catgccgtcg gtacgtatta
     1381 caaagggcga catattggcg caaaaggtac cgctattttt tcatttcatg ccattaaaaa
     1441 tattacctgt gcggaaggtg gcctgattgt aactgataat gaaaaccttg cccgccagct
     1501 acggatgctg aaatttcacg gcctgggtgt cgatgcctat gacagacaaa cctggggccg
     1561 agcaccgcag gctgaagtct taacaccggg ctataagtac aatctgaccg atattaacgc
     1621 cgcaattgcc ctgacacagt tagcaaaatt agagcacctc aacacccgtc ggcgcgaaat
     1681 tgcccagcaa tatcagcaag cactggctgc tctccccttt cagccattaa gccttcccgc
     1741 ctggccgcac gttcacgcct ggcatctgtt tattattcgt gtcgatgaac aacgttgtgg
     1801 tatcagtcgc gatgcgttga tggaagcgtt aaaagaaaga ggcattggta ccgggttaca
     1861 tttccgcgcc gctcacacac aaaaatatta tcgcgagcgt tttcccacgc tgtcgttacc
     1921 gaataccgaa tggaatagcg aacgcatctg ttctttgccg ctgttcccgg atatgactac
     1981 cgccgatgcc gaccgtgtca tcacagccct tcagcaactc gcaggacaat aagccatgtt
     2041 tgaaatccac cctgttaaga aagtctcggt ggttattccc gtttataacg agcaggaaag
     2101 cttaccggaa ttaatcaggc gcaccaccac agcctgtgaa tcgttgggga aagagtatga
     2161 gatcctgctg attgatgacg gcagtagcga taattccgcg catatgctgg tcgaagcctc
     2221 acaagcggag aacagccata ttgtgtctat tttgcttaac cgcaattacg ggcaacattc
     2281 agcgattatg gcgggattca gtcacgttac tggcgactta attattaccc ttgatgccga
     2341 tctccagaat ccgccagaag aaatcccccg cctagtggca aaagccgatg aaggttacga
     2401 cgtggtaggg actgtacgcc agaaccgcca ggacagctgg tttcgtaaaa cagcttcgaa
     2461 gatgattaac cggcttattc agcgcaccac cggcaaagcg atgggtgact acggttgtat
     2521 gctgcgcgcc tatcgccgtc atattgtcga tgcgatgttg cactgccatg aacgtagcac
     2581 ctttatcccg attctggcga atatcttcgc ccgccgtgcc attgaaattc cagtacatca
     2641 tgccgagcgt gagtttggtg aatccaaata cagttttatg cgcctgatta atttgatgta
     2701 cgacctggtg acctgcctta ccacaacgcc gctacgtatg ctgagtctgc tcggcagcat
     2761 tattgcgatt ggaggtttta gcattgcggt gctgctggtg attttacgcc tgaccttcgg
     2821 accacaatgg gcggcagaag gcgtctttat gctatttgcc gtgctgttta cttttattgg
     2881 cgctcagttt atcggcatgg gattactcgg tgaatatatc ggcaggatct acaccgatgt
     2941 ccgcgcccgc ccccgctatt ttgttcagca agttatccgt ccatccagca aggaaaatga
     3001 ataatgaaaa ccgtcgtttt tgcctaccac gatatgggat gcctcggtat tgaagctctg
     3061 ctggctgccg gttacgaaat tagcgccatt tttacccata ccgataatcc cggtgaaaaa
     3121 gccttttatg gttcggtggc tcatctggcg gcggaaagag gcattccggt ttatgcgccg
     3181 gataacgtta atcatccgct gtgggtggaa cgcattgccc aactgtcacc agaggtgatt
     3241 ttctcttttt attatcgcca tcttatttgc gacgagattt tgcagctcgc tcccgcaggt
     3301 gcatttaatc tgcacggttc gctgttacca aaatatcgtg gtcgcgcgcc gctgaactgg
     3361 gtgctggtga acggtgaaac ggaaacgggc gttacattgc accgaatggt aaaacgtgcc
     3421 gatgctgggg ccattgtggc gcaactgcgc gttgccattg cgccagacga tatcgctatt
     3481 acgctgcatc ataaattgtg ccatgccacg cgccagctac tggaacagac attacccgcc
     3541 attaaacacg gtaatattct ggaaatcgcc cagcgcgaaa acgaagccac ctgttttggt
     3601 cgcagaacgc cggatgacag tttccttgaa tggcataaac cggcatccgt actgcacaac
     3661 atggtacgtg ccgttgccga tccgtggccg ggtgccttca gctatgttgg caatcagaaa
     3721 ttcaccgtct ggtcgtcgcg tgttcatcct catgccagca aagcacagcc ggggagcgtg
     3781 atttctattg caccgctgtt gattgcctgt ggcgatggcg cgctggaaat cgtcaccgga
     3841 caggcgggcg acggcattac tatgcagggc tcgcaattag cgcagacgct gggcctggtg
     3901 caaggttcac gcttgaatag ccagcctgcc tgcaccgccc gacgccgtac ccgggtactc
     3961 atcctcgggg tgaatggctt tattggcaac catctgacag aacgcctgct gcgcgaagat
     4021 cattatgaag tttacggtct ggatattggc agcgatgcga taagccgttt tctgaatcat
     4081 ccgcattttc actttgttga aggcgatatc agtattcatt ccgaatggat tgagtatcat
     4141 gtcaaaaaat gtgatgtcgt cttgccgctg gtggcgatag ccacgccgat tgaatatacc
     4201 cgcaacccgc tgcgcgtatt tgaactcgat tttgaagaga atctgcgcat tatccgctac
     4261 tgcgtgaagt accgtaagcg aatcatcttc ccgtcaactt cagaagttta tgggatgtgt
     4321 agcgataaat acttcgatga ggaccattct aatttaatcg tcggcccggt gaataaacca
     4381 cgctggattt attcggtatc aaaacaatta cttgatcggg tgatctgggc ctatggcgaa
     4441 aaagagggtt tacagttcac cctcttccgc ccgtttaact ggatgggacc acgactggat
     4501 aaccttaatg cggcacgaat cggcagctcc cgcgctatta cgcaactcat tctcaatctg
     4561 gtagaaggtt caccgattaa gctgattgat ggcggaaaac aaaaacgctg ctttactgat
     4621 attcgcgatg gtatcgaggc gttataccgc attatcgaaa atgcgggaaa tcgctgcgac
     4681 ggtgaaatta tcaacattgg caatcctgag aacgaagcga gcattgagga actgggcgag
     4741 atgctgctgg cgagcttcga aaaacatccg ctgcgccatc atttcccacc gtttgcgggc
     4801 tttcgcgttg tcgaaagtag cagctactac ggcaaaggat atcaggacgt agagcatcgt
     4861 aaaccgagca tccgcaatgc ccaccgctgc ctggactggg agccgaaaat tgatatgcag
     4921 gaaaccatcg acgaaacgct ggatttcttc ctgcgcaccg ttgatcttac ggataaacca
     4981 tcatgaccaa agtaggctta cgcattgatg tcgatacctt tcgtggcacc cgtgaaggcg
     5041 tgccgcgtct gctggaaatc ttgagtaagc ataatattca ggccagcatt tttttcagcg
     5101 tcggcccgga caatatgggc cgccatctct ggcgactggt gaagccacag tttttgtgga
     5161 agatgctgcg ctcaaacgcg gcatcgcttt atggctggga tattttactg gcaggtacgg
     5221 cctggccagg taaagagatt ggtcatgcca atgccgatat cattcgtgaa gcggctaaac
     5281 atcacgaagt cggcctgcac gcctgggatc accatgcctg gcaagcccgt agcggtaact
     5341 gggatcggca aacaatgatc gacgatattg cacgcggtct tcgcactctg gaagagatta
     5401 tcggtcaacc ggtaacctgt tctgccgctg cgggctggcg tgccgaccag aaggtgatcg
     5461 aagcaaaaga agcgttccat ttgcgctaca acagcgattg tcgtggggcc atgccgttcc
     5521 gtccattgct cgaatcagga aaccctggca ctgcgcaaat tccggtgacc ttacccacct
     5581 gggatgaagt gattggtcgg gatgtgaaaa cagaagattt taacggttgg ttactcaacc
     5641 gcatcctgcg agataaaggc acgccggttt ataccattca tgcagaagtt gaaggctgcg
     5701 cttatcagca taattttgtg gatctcctca aacgcgcagc tcaggaaggc gtgacatttt
     5761 gccctttaag cgaactgtta tcagagacgt tgccgctcgg acaagttgtt cgcggaaata
     5821 ttgccggacg tgaaggctgg ctgggttgcc aacaaattgc gggtagtcgc tgatgaaatc
     5881 ggtacgttac cttatcggcc tcttcgcgtt tattgcctgc tattacctgt taccgatcag
     5941 cacgcgtctg ctctggcaac ccgatgaaac gcgttatgcg gaaatcagtc gagaaatgct
     6001 ggcatccggc gactggattg tgccccatct gttagggcta cgttatttcg aaaaacccat
     6061 tgccggatac tggattaaca gcattgggca atggctattt ggcgcgaata actttggtgt
     6121 gcgggcaggc gttatctttg cgaccctgtt aactgccgcg ctggtgacct ggtttactct
     6181 gcgcttatgg cgcgataaac gtctggctct actcgccaca gtaatttatc tctcattgtt
     6241 tattgtctat gccatcggca cttatgccgt gctcgatccg tttattgcat tctggctggt
     6301 ggcgggaatg tgcagcttct ggctggcaat gcaggcacag acgtggaaag gcaaaagcgc
     6361 aggattttta ctgctgggaa tcacctgcgg catgggggtg atgaccaaag gttttctcgc
     6421 ccttgccgtg ccggtattaa gcgtgctgcc atgggtagcg acgcaaaaac gctggaaaga
     6481 tctctttatt tacggctggc tggcggttat cagttgcgta ctgacggttc tcccttgggg
     6541 actggcgata gcgcagcggg agcctgactt ctggcactat tttttctggg ttgagcatat
     6601 tcaacgcttt gcactggatg atgcccaaca tagagctccg ttctggtact acgtgccggt
     6661 catcattgcc ggtagcctgc cgtggctggg attactcccc ggtgcactgt acacaggctg
     6721 gaaaaaccgc aagcattccg caaccgtcta tttgttgagc tggacgataa tgccgctgct
     6781 gtttttctcc gtcgctaaag gtaaattgcc cacctatatt ctttcctgct ttgcatctct
     6841 ggcaatgctg atggcgcatt acgctttgct ggcagcaaaa aataatcctc tggcgctgcg
     6901 gattaatggc tggattaaca tcgcttttgg cgtcactggc attattgcca catttgtggt
     6961 ctccccgtgg ggaccaatga acacgccggt gtggcaaacc ttcgagagct ataaagtctt
     7021 ttgtgcctgg tcgatttttt cgctatgggc atttttcggc tggtacacct taacaaacgt
     7081 cgaaaagacc tggtctttcg ccgcgctttg cccgctgggg ctggcgttgc tggtaggatt
     7141 ttcaattcct gacagagtca tggaaggaaa acatccgcaa ttttttgtcg agatgacaca
     7201 agaatcactt caaccaagcc gctatattct tactgatagc gtcggtgttg ccgcaggtct
     7261 ggcatggagc ctgcaacgcg atgacatcat catgtatcgc cagacaggtg agttgaaata
     7321 cggccttaat tatccggatg cgaaagggag atttgtcagc ggtgatgagt tcgcaaactg
     7381 gcttaatcaa catcgtcagg aggggattat tacactcgtg ctttcggttg accgcgatga
     7441 agatatcaac agtctcgcca ttccgcccgc agatgccatc gatcgtcagg agcgtctggt
     7501 gctgattcag tatcgtccca aatgatctgg ctaacattag tctttgccag cttgcttagc
     7561 gttgccgggc agttgtgtca gaaacaggca acctgctttg tggcgataaa caaacggcgc
     7621 aaacatatcg tgctgtggct gggactggcg ctggcttgtc ttggtcttgc catggtgctc
     7681 tggctgctgg tcttgcagaa cgtaccggta ggcattgcct acccgatgtt aagtctgaat
     7741 tttgtctggg tgacgctggc tgcagtaaaa ctgtggcacg aaccggtatc gccgcgtcac
     7801 tggtgtgggg tggcgttcat tattggtggc attgtgatcc tcgggagtac ggtgtaatgg
     7861 gcctgatatg gggattattc agcgtcatta ttgcctcagt tgcgcaatta agcctgggtt
     7921 ttgcggcaag tcatctgccg ccgatgacgc acttatggga ttttatcgcg gctctgttag
     7981 cttttggcct ggatgcccgg atactgttac tcgggctgct gggttatctg ctttccgttt
     8041 tttgttggta taaaacgcta cataaacttg cgctaagcaa agcctatgcc ttgctcagta
     8101 tgagttatgt gctggtatgg attgcttcaa tggtacttcc cggctgggaa gggacttttt
     8161 cgctgaaagc actactggga gtagcctgta ttatgagcgg gttgatgctg attttcctgc
     8221 ccacgacaaa acaacgttac tgagttttcc ctgccgctgt acactgccgt tcccactcat
     8281 cggggctata actgcttgcc gagaggactt tcaccgtatg cagcttttca cgattaatac
     8341 aataaagcgc attctgcaaa ggcgagagta aatcccccac tttcacggcg aagtcactct
     8401 tcacttcggc gatcattttt atcgcgccgc cagcatcgca gagcataagt acatgtctgt
     8461 tatcttgttt attgcagcac gattttttga ccagccattc cattgcatta tcctgtttgc
     8521 taagagtttt cacatcaatt tacagattaa cagataaact ctttatcaac ggcaatggaa
     8581 tggcagaaat gagaagtgaa acggagggtt aattattgct gacgttgcac ccactctttt
     8641 agcgcctgac gtgaaatttt aataccgccg tttttcagct ccggcggtaa agtcagccag
     8701 cgcaccggtt gttgaaaacg agccagctta tctttcaccc attcgccaag atcaacggtt
     8761 tgctggtcat actccaccac cgctaccggc cgatgaccaa actccttgtc ggcaacggga
     8821 acgataaaca cctgcaaaac cgcaggatgt gcagcaataa cacgctcgac ttcttccggc
     8881 tgaataccct caccgccact gaataacaga ttgtctaaac gtccgacaat ggtcagcttg
     8941 ccattatgca tctcaccgcg atcgcgcgta gcgtaccagc cttcgtcatt aaccagtgaa
     9001 accagttgcc cgttacgcca gtaaccttct gccatactgg cagcccgcag ccacacttca
     9061 ttattaacga ttttcacttc ccgacccggc agcggcgaac caacgtctgc caggccgtcg
     9121 gcttctttcg cacataccgt ggaggcaaac tcggtcagac catagccgca aaagcaacga
     9181 atcccctgct cgcgcgcctg ttccgtcaac tcgaccggga tagccgcgcc gccaagtaac
     9241 accgctttca gggaaacgga actgcggtta accagcaaac gccagagttg tgttggcacc
     9301 agtgaagcgt gagtacagcc tgccagcatt tgctccaatg gctgtttatc acgcaccgtc
     9361 atccgcgcac cagcgtataa ccagcgccac ataattccct gaccggagac gtgaaacagc
     9421 ggtaaagaga gcaaccagtc atcgtgatcg ccaaacggaa tcagcgataa cacaccttgc
     9481 gcactggcaa gatgggcctg ataagtatgg acagcggctt tcggtaaacc ggtggagccg
     9541 gaggtcaatg tcattgaaca aagacgtgtt ggttgccaca gagctgaatg tgtgccttca
     9601 accatctgaa tatgcagtga agttaacgcc gggaaagtat tttctccttc cagcaccagc
     9661 gcatattgca gtgtaagatt tggcagtaat tcctcaagca acggttgcgg aagctgtgga
     9721 tttacgggca gcacccgcgc cccgcattgc agtaacgcca gccaggcgag cagcgtttgc
     9781 ggcgtattcc acgcccgcaa catcacgccg ctgccctcaa ccacaccctg cgccgcaaag
     9841 cccgtagcta actcatcgac gcgagcacaa agctcgcgcc agttgagttg ctcgtcatta
     9901 agacgtaagg cgatggcttc tccccgcact tgccgccagt gacgccacgg ccagtcagag
     9961 aagatcataa caaccgctcc agtgcatcaa cttccacgac aggcagcgtg ctacccggcc
    10021 agcgacgtac ctgctgcgcc tgcatcagat ccagcgtgtc cagccctgga atggtgtccg
    10081 gcgttaacca ggcggcaatc cgcgccagtt gcgttaagcc taagctcgac tcaatagaag
    10141 aactgatcac cgccgtcagc ctcaacgcgt gcgccgcctg tacctgctcg cgtacttttt
    10201 ccagactgcc cgtgagcgtg ggtttgataa ctaccgcgcg cacgccctct tcagccacaa
    10261 aggcaaaatc cggctcgcgc aggctttcat cccaggcaat ggcaatgccg gtttcacggg
    10321 caaacgctcg cgaatcatcg cgggttttgc acggctcttc gagaaacgcg atgcggtggc
    10381 gataatccgg gttaacatat ttggcaaact gctgaccttt cagcggtgtc caggcgcgat
    10441 ttgcgtcaag acgcaaatgc agatccggaa ttgcctccag caacagatta accaccatgc
    10501 cgtcgcgcac ggcttcgtac aatcccactt tgaccttcgc cactttctcg cctggcatat
    10561 cagcaagttt gaggatcaga tcgtcaggat cgccattaca cagtggtgcc gcacggtaat
    10621 tggccgcctg cgggagcgta tctgccagct ccgccaatgc acagcttacg ccaaaggcaa
    10681 tggaaggcat ctgcagtagc tcgcaatcgc ctgccagcca gttatttacc caggcaagca
    10741 gcacgctttg cgcctcttcc caggtttcct ggctgaagcc cggcagtggg gagatctccc
    10801 cccacccttc gcgctcgccc tcacgcaggc aaacgtacag cccgtcgcgg gtttttaacc
    10861 gcctgtcgcg cagaaccacc cccgcgtcca tggggatctg ccagcggtat acctgcgcgc
    10921 tacgcattac ggattccgtt taaatttgct gaaatcaggc tgacgtttct ggttgaaagc
    10981 gttgcgacct tcctgacctt cttccgtcat gtagaacagc atggtggcgt tgcccgccag
    11041 ctcctgcagc cccgcctgcc cgtcacagtc ggcgttcagt gcagctttca ggcagcgcag
    11101 cgccatcgga ctgttttgca gcatttcgcg gcaccagcga acggtctctt tttccagatc
    11161 cgccagcggt accacggtgt tgacaaggcc catatccagc gcctgtttcg cgtcgtactg
    11221 acggcacagg aaccagattt cccgcgcttt tttctgtccg acgatgcgag ccatgtagga
    11281 agcgccccag ccgccgtcga aggaaccgac tttcgggcca gtctgaccga agatggcatt
    11341 atctgccgcg atagtcaggt cgcacatcat gtgcagaacg tgaccgccgc cgatggagta
    11401 gccagccacc atcgcgacaa ccggtttcgg acaggtacgg atctgacgct ggaagtccag
    11461 cacgttcagg tgatgtacgc cggaatcatc tttatagccg ccgtaatcac cacgcacttt
    11521 ctggtcaccg ccggagcaga acgctttatc acctgcgcca gtcagaatga tcacgccgac
    11581 gttgtcgtca taacgcgcat ctgccagtgc ctggatcatc tcttttaccg tcagaggacg
    11641 gaaggcattg cgcacctgcg gacgattaat ggtgattttt gcgataccat cggtggattt
    11701 ttcataacga atgtcctcga aaccttcgga gcagtcgtgc cattcaaccg gtgcgtaaag
    11761 cattgcttca tcaggataaa tcatattgtg tcctttagtc agaaacgcaa gatctgcgcc
    11821 agacttgcga ttacgccagc gggattttcc cgatgcgcgt tatgtccgac gcgaggaatg
    11881 acatggcagt cggcagccag ttccgccgcc agggcgcgga atttgctgtc acgttcacca
    11941 cataaataat aaaacgcaaa tgtgcgggcg ctaaggttag cacgtaaatc aggctggacg
    12001 gcgagagaag tcgcctccag catggcggca agggttgcgc cattattgtt gctgcgcagc
    12061 gccaccagct cccggcgttg atcgtcattg agcgaggcaa aaacaggctg ttgataccag
    12121 tcggcaaata ccgccgttaa cggttctgtg cgaaaacgct gcgcccattg gcgatcggaa
    12181 cgctgacgtt ccgcacgttg ttcagcattt tgcagccccg gatgcccgcc ttcgacaata
    12241 accccacaaa gccccgccag cccctggcaa gccgccatca tcgccacccg tccgccaagc
    12301 gagtacccca ccagccagaa gtcaaggatg ttgtaactaa ccaaggtttt acgcagtaag
    12361 tcggtgacct catcaaatcc atcgacgcta atcgccgccg aaccaccatg acctgggaga
    12421 tcaacataca accgtgagta gtcggcaaac gcctcgccca cttcttgcca ttcgtggcaa
    12481 tcgccggaaa aaccgtgcaa aaacaccagc cagggtaaac ctggttttcc gtgttttgcc
    12541 tgcgcgtgca ggatcataaa tggcttacct gcgccagaag ttgctggagc gtttgcgcac
    12601 catcggtgtc gttaaccacc atttcaatca ccgtggtggt tggcgtgcgc caggcgtcgg
    12661 caaatgccgt ttcaagttcc tgccagtttt gcggacgatg atatttcagc tcgaacatcg
    12721 cggcggcgtg ctcaaaatgg acgttttgcg gcatcagata gaaacgctca cgctcgcttt
    12781 gcggcgttgg caacagcgag aaaatttgcc cgccgttgtt gttcaccaca attaatacca
    12841 gcggcgcaga aacctgacgc aataacgcca gcgcgttgag atcgtaaagt gcggagagat
    12901 cgcccacaat cgccagcgtc ggtttgccgc ttgcccgctg aacgcctgcg gcggtcgaaa
    12961 gcagtccgtc gataccgctg gcccctcggt tgctgtacac cgggtaacct gccggaagtt
    13021 gcgaaagcgc atcaatcaga cgtaccacca ggctgttacc gacaaacaat tgcccctgtt
    13081 caggcagata gtcgctgatg cgatgcgcca gttgcgcttc gccaaacgca tcgcgacggg
    13141 caataaccgc ctgcattgcc tgttccgcca ggcgcgggat ttcaacgcac cagggctggc
    13201 gtttttctgc cggatgcagc tccagccagt cggcaatatt ggcaattaag cggcgtccac
    13261 gatggtgcgc cggatcaagc cgcccttcga tgtcatccac aatccagtac tcttcgggtt
    13321 cacagcttgc ctgccattgc aggagccgtt tgcccgtcag gctgcttccc agttgcacca
    13381 caatttgcgc ctgctgcagc tcgctggtcg ctttggcatt gcctaaccaa agatcggcac
    13441 acggcagcgg ctgcccggtt tgtgacagca catcgccaat cagcggccag ccaagagttt
    13501 gcgcccacag ggcaactttt ttgccctctt ccgcactcat gcgcccggca accaccacgc
    13561 cgcgcttttg tcgccagaag aaccagtcgc gctgtttttc actttccaga ctaggcgctt
    13621 cacgcagcca cggtttgtcg tcctgccacc agtcacccag acgctgttgc cagctaagcc
    13681 cggtatcgtc catttcgcca tacagcggtt cagcaaacgg gcagttgata tggactcccc
    13741 ccgcatgaag cgtaccgaga gcgtggtcga tggtagaaac cagccaacgt gcggggatat
    13801 cctgggtcgg gcgcggcaat gaaatactgt gcgtggggtg agaggcgaac attcccggct
    13861 ggcgaattgc ctgattcgcg ccgcagtcaa ttagctccgg cgggcgatcg gcggttaaga
    13921 gaatcagttt ttctccggtt aacccggctt caatcagtgc cggatagaga tttgccaccg
    13981 cagtgccgga ggtcacaatc accgccaccg gctgcttgct gactttcgcc agccccagcg
    14041 ccagatgccc caccccacgc tcatcgaaat gggtgtggtg aatgaatgcg gaattctccg
    14101 ccgccgctaa cgttaacggt gtagaacgcg agcctggggc gatacagatg tgtctgacgc
    14161 cgtgacgcgt taatgcttcc agaatgaccg ccgcccagcg tcggttaaat gcgcttactg
    14221 acatgagttt gtccggtatc aatattgcgg ctaagtataa ggagctacaa aaatagatta
    14281 ttgatatgaa tcggtaatga tgcgactcat tactattcca tttgtaataa agtacgcaac
    14341 cctgccgctt tgttgtcgat ttcctgccac tcttgctcgg ggtcggaacc acggacaatg
    14401 cccgcgccag catataatcg cacgacattg ccgctaattt ttgctgagcg cagggaaacg
    14461 cagaattcgc tttgttgtaa tgagagatag cccgcagaac cggcgtacca ttctcgggtg
    14521 aacggttcgt gacgggcgat aaactgtcgc gccagatcgc gcggtaagcc agcaactgct
    14581 gccgttggct gcaactgatg taaacagatc acatcatccg ctttgttgag tgaagtccag
    14641 atacagcggc gaagatgctg cactttacgc agacgcagta cctgcggcgg taaaacatcc
    14701 agcgtctggg tatcggcctg taatcgttgg cagatatctt ccaccaccag catgttctcg
    14761 cgctggtttt tatcatccgc catcagccac tcttctaact gctgcgcctg cttatcatca
    14821 ggatgatttg ctactgttcc cgccagcgct tcagtacgca gcgctttgtc acgccgccgc
    14881 cataaccgtt ccggtgaaga gccaagaaaa gcattttcgc catcaaaggc catgtaaaaa
    14941 tggtagcaat tcagattcag tcgacgactg gcagccatca tcgccgccgc gttgaccgga
    15001 cttgcgaaat gcaggtcagt tgcccgagcg agcaccactt tgtcgagctc accttcggcg
    15061 atggttttcg ttgccagttc gattaattgc gtccagcccg ttttgtccgg ccagtgttgt
    15121 tctcgcgtgg tggttaaatg taacccaggc aagggcttga tactcaccag tgtggcgata
    15181 aattcttttg cctgaatcgc atcgtgctga agggagcttt cgctgaatag cgtcagccgc
    15241 agcgtggctt taccgccaca gcgtcgccat tccaggcggg gtaaaagtaa attgccctgc
    15301 gacgggtcaa aagcattcag cccccaaatg cgtaagtcgg cgtgttccgg gtgctggcga
    15361 agaaaacgtt gtgcctggtc caacgacgta aaacgggtaa tcgcgcccag gacggcagct
    15421 tcttcatcac cattacgttg ttgccagtag aattgcgggt acgtttgctg actggccagc
    15481 cagctcaagg catcaaaagc gtctttgaga gggaaaggaa tatcgataac ccgaatgccg
    15541 ggtgtcgccg gaatctcttg cgacaaatgg cgcagtagat tttccagcgc cgtagtaagt
    15601 gattgcacgc ggacctctcc ctgttaaaag cctcacatta tacggggtac tacaaaaaaa
    15661 atgcagtacc ccggtgtagg gaggttttaa cggcgtgcca gcaacagtcc tagtaccagc
    15721 ccaacggccg cgcccacacc aattccttgc caaggttttt cgtggacgta gtcatcagca
    15781 cgataaacag cctgcttcgc ccgatagtaa taactgtctg aaacctggct aacccgtttt
    15841 ttcacatcat ccagcgcttt ttctgcacgc gctttcagct caacatattt ctgatcagcg
    15901 ggatcgccag aggagcggag cacctcttcc agtgtctcac taagcagcgt caggtcgtca
    15961 tcgatacgtg tatcaccaaa ctgattagac attctcgttc tccatttgcg taaaacctgt
    16021 cactaactat agacaagggt tgttgattac gcctgaatta cctcgcgtgc catcccaatg
    16081 tgtgggatac catcttcttc atagacctcc gtcacaggga taaaaccgaa actctggtag
    16141 aagttttgca gatgcgcctg cgccccgagg taaacaggct tatcaggcca gtgatgcgtg
    16201 caggtgtcga gggttttact catcagttgc tgccccactt tttcgccacg caacgcttca
    16261 ctgacaatca cccgaccaat aacgaccggc tcaagatcat catcactttt cagaatcctc
    16321 gcatatgcca ccagttcatc atttttccaa ccgagaatat ggcgattatc ccccgtcaaa
    16381 tcatcaccat cgatatcctg ataagggcaa ttctgctcga caacaaacac cgcgcaacgc
    16441 agttgtaata aggcataaag ctgggaaacc gataattcag agtgatgcag atcttgccat
    16501 tcaatcataa tgctctcctt ttagatgtat accttatact agccggaata ttttttgaaa
    16561 cgtgatgaac tcatggaatt aattttttta ggtacttcag ccggtgtgcc aacccgcacg
    16621 cgcaatgtca cggcaatatt gcttaacctg caacatccga cccagagcgg actttggttg
    16681 tttgactgcg gtgaaggcac ccagcatcag ctactgcata ccgcctttaa ccctggaaaa
    16741 ctggacaaga tttttatcag tcaccttcat ggcgatcatc tttttggttt acccggcttg
    16801 ctgtgcagtc gttctatgtc aggcattatc caacccttaa cgatttatgg tccgcaaggt
    16861 atccgtgaat ttgtggaaac cgcgctgcgg attagcggct catggaccga ttatccgctg
    16921 gaaattgtcg aaattggcgc tggcgaaatt ctcgatgatg gcctgcgcaa agtaaccgct
    16981 tatccgctgg aacacccact ggaatgttat ggctatcgta ttgaagaaca tgataaaccg
    17041 ggtgcattaa atgcccaggc attaaaagct gctggcgtgc cgcctggccc actgtttcag
    17101 gaattaaaag cgggcaaaac aatcacgctg gaagatggaa ggcagattaa cggcgcagat
    17161 tacttagctg ctccagtgcc aggtaaagcg ctcgctattt tcggcgatac cggcccctgc
    17221 gatgccgcac ttgacctggc taaaggtgtc gatgtcatgg tgcacgaagc gacgctggat
    17281 ataaccatgg aagccaaagc caatagtcgc ggccatagct ctacacgcca ggctgcgaca
    17341 ctagcccgtg aggctggagt cggtaagcta atcattaccc acgtcagctc gcgctatgat
    17401 gacaaaggtt gtcagcacct gttacgtgaa tgcaggtcaa ttttcccggc gactgaacta
    17461 gcgaatgatt tcaccgtgtt taacgtttaa ctctgc
//
LOCUS       DAJVUY010000084        17477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.084, whole genome shotgun sequence.
ACCESSION   DAJVUY010000084 DAJVUY010000000
VERSION     DAJVUY010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.084"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(28..2625)
                     /gene="topA"
                     /locus_tag="OQQ72_002497"
     CDS             complement(28..2625)
                     /gene="topA"
                     /locus_tag="OQQ72_002497"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCS2012186.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3005..3256
                     /locus_tag="OQQ72_002498"
     CDS             3005..3256
                     /locus_tag="OQQ72_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HCS2012187.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3292..4341)
                     /gene="sohB"
                     /locus_tag="OQQ72_002499"
     CDS             complement(3292..4341)
                     /gene="sohB"
                     /locus_tag="OQQ72_002499"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HCS2012188.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQCKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4561..5319
                     /locus_tag="OQQ72_002500"
     CDS             4561..5319
                     /locus_tag="OQQ72_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HCS2012189.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5316..5907
                     /gene="cobO"
                     /locus_tag="OQQ72_002501"
                     /pseudo
     CDS             5316..5907
                     /gene="cobO"
                     /locus_tag="OQQ72_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5947..6819)
                     /gene="rluB"
                     /locus_tag="OQQ72_002502"
     CDS             complement(5947..6819)
                     /gene="rluB"
                     /locus_tag="OQQ72_002502"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HCS2012190.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7030..8925)
                     /locus_tag="OQQ72_002503"
     CDS             complement(7030..8925)
                     /locus_tag="OQQ72_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HCS2012191.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8953..9573)
                     /locus_tag="OQQ72_002504"
     CDS             complement(8953..9573)
                     /locus_tag="OQQ72_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCS2012192.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9570..10451)
                     /gene="yciV"
                     /locus_tag="OQQ72_002505"
     CDS             complement(9570..10451)
                     /gene="yciV"
                     /locus_tag="OQQ72_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HCS2012193.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10589..10633
                     /gene="trpL"
                     /locus_tag="OQQ72_002506"
     CDS             10589..10633
                     /gene="trpL"
                     /locus_tag="OQQ72_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HCS2012194.1"
                     /translation="MKAIFVLKAWWRTS"
     misc_feature    10610..10703
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00513"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Trp leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00513"
     gene            10725..12287
                     /gene="trpE"
                     /locus_tag="OQQ72_002507"
     CDS             10725..12287
                     /gene="trpE"
                     /locus_tag="OQQ72_002507"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HCS2012195.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12287..13882
                     /gene="trpD"
                     /locus_tag="OQQ72_002508"
     CDS             12287..13882
                     /gene="trpD"
                     /locus_tag="OQQ72_002508"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HCS2012196.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13883..15244
                     /gene="trpCF"
                     /locus_tag="OQQ72_002509"
     CDS             13883..15244
                     /gene="trpCF"
                     /locus_tag="OQQ72_002509"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HCS2012197.1"
                     /translation="MMQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDAL
                     QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLP
                     IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG
                     GLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI
                     NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG
                     AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL
                     HGNEDQLYIDTLREALPTHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW
                     SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL
                     RAY"
     gene            15256..16449
                     /gene="trpB"
                     /locus_tag="OQQ72_002510"
     CDS             15256..16449
                     /gene="trpB"
                     /locus_tag="OQQ72_002510"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HCS2012198.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16449..17255
                     /gene="trpA"
                     /locus_tag="OQQ72_002511"
     CDS             16449..17255
                     /gene="trpA"
                     /locus_tag="OQQ72_002511"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HCS2012199.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLRDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS"
BASE COUNT         4221 a         4669 c         4344 g         4243 t
ORIGIN      
        1 tttataaaaa cctgacagaa ttaaaggtta tttttttcct tcaacccatt tgccatcaac
       61 ataaaatgct gaccagccag tcgcctttcc gtctttttcc gaagagacat attgctgttt
      121 ggttttacgg ctaaagcgaa ccatggtctt attaccttcc ggatcctgct gtggcgcatc
      181 ggccagataa cgcagttttt ccggcagacg gtcgcggaag cgataaagct cttccaccag
      241 tggcgcacgc gtttcacgcg atttcgggaa agtgttggca gccaggaaaa cacccgcagc
      301 gccgtcacgc agcacgaaat aagcatctga tttttcgcac ggcagctcag gtaatggcac
      361 cggatcttct ttcggtggtg ccacttcgcc gttacgtaaa atcttacgtg tgtttttaca
      421 ctcttcgttg gtgcaggcca tgtatttacc gaaacgcccc attttcaggt gcatttcaga
      481 gccacatttt tcacactcaa cgatcgggcc gtcataacct ttaatgcgga attcgccctc
      541 ttcgatctcg taaccgtcgc aggttgggtt attaccacag acatgcaact tacgtttcgg
      601 atcgatgaga tagctgtcca tcgccgtgcc gcatttcggg caacgacgtt ttgcgcgcag
      661 cgcgttggtt tcagcgtctt cgccttccag tacgttcagc acttcgtttt ccggcaccag
      721 gttaatggtg gttttgcaac gctctttcgg cggcagcgca taaccagaac agccaaggaa
      781 taccccggtg ctcgctgtgc gaatccccat tttgcgacca caagtcgggc agtcaatgct
      841 ggtcagaacc atctggttcg ggcgcatacc accctcttcc ggatcttttt cagctttatc
      901 taactgctgg gtgaaatccg agaagaagtg atccagtaca gctttccact ctgcttcgtg
      961 atttgccacc tggtcgaggc tgttttccat ctgtgcggtg aagtcgtagt tcattaactc
     1021 gcggaaattt tcttcaaggc gatcggtgac gatttcgccc attttttccg catagaaacg
     1081 acgattttct actcgcacgt agccacgatc ctgaatggtc gaaatgatcg acgcataggt
     1141 agacggacga ccgataccgc gtttttccag ctctttaacc agcgatgctt cactgaaacg
     1201 ggctggcggc ttggtaaagt gctgggctgg tgtaagttca acgagcgtca gagcatcgcc
     1261 tttattaact gctggtaaga tgcgatcttc atcgccttta cgcaacgcag gcatcacttt
     1321 tgtccagcca tcaaaacgca aaatacgacc gcgtgctttc aggcggaaat cgcccgcacc
     1381 aacggtcagc gtcgtggagt catatttcgc tggggtcatc tggcaggcta cgaactgacg
     1441 ccagattaac tggtacagtt tctgcgcatc tgcttccata tccttcagcg attccgccat
     1501 cacattgacg tcagaaggac gaatcgcttc gtgcgcttcc tgtgagtttt ctttgctggc
     1561 gtactgattc ggactttccg gcagatattt cttaccaaaa ttatcgctga tataaccgcg
     1621 aaccatattt accgcgtcct gactcaggtt agtggagtcg gtacgcatgt aagtgatata
     1681 gcctgcttca tacaaacgct gcgccatcat catggttttt ttcacgccaa atccaagacg
     1741 ggtgctggca gcttgttgca gcgtagaggt aataaaagga gcgccaggtt tactggttgt
     1801 cggtttgtct tcacgttcca gcacgctgta gcgcgctttt tccagcagac ttaccgcagc
     1861 ctgagtttgt tctttgttga ccggacggaa cggtttgtcg ttctgatgag tcacctgtaa
     1921 cgccaacgct tcaccagatg gcgtggtcgt gctggcatcg acttcccaga actcttccgg
     1981 cacgaacgct ttaatttcac gctcacgctc gaccaccagg cgaaccgcca ccgactgcac
     2041 acgaccggca gacagaccac gagcgatctt tttccatagc agcggcgaaa ccatataccc
     2101 caccacgcgg tccataaagc gacgcgcctg ctgggcatta acacgatcaa tattcagctc
     2161 acccggtttg ttaaatgcct ggcggatcgc gtttttagta atttcgttaa acaccactcg
     2221 gctatagcgc gcatcatcac ccccaatcac ttcccgcagg tgccatgcaa tggcttcccc
     2281 ttcgcggtca aggtcggttg cgagatagat gtggtcggct ttttcagcca gttgtttcag
     2341 ttcagagacg accttctctt taccaggcaa cacttcatag tgcgcctccc aattgtgcca
     2401 cgggtcaacc cccatacggt tgacgagagc gccacgttca tcctttttag gctttttagc
     2461 cgtcttggtg gaggtagagt cggcactctt tttggcagct gagccactgg tcggcaaatc
     2521 gcggatgtga ccgacgctgg atttcaccac gtagtcacta cccagatact tgttgatcgt
     2581 tttggctttt gccggggact caacgatgac aagagcttta cccatattca ccttacctaa
     2641 tttgattctt ccaggaatgc gtcgcacgtt gataaacctt ccactggcaa cgagttaccg
     2701 atatggactc gttctctgcg gatatcaacc ccttgtcgtg actctgttca cgaaaattca
     2761 ggtgactgag ttaacaggtc ttggcctaca ggcgctatag cacgacggaa ttttggtcga
     2821 atgtcaagca aatctattgc cagattgacg aaagcgtcac actgtacctg ataaaatccg
     2881 atacgcaact ttattagcat gcaaaatcca aagttgccag taaggcgctc ttgccaccag
     2941 cgtggtatat ttgtctgcaa gccatgcctg gcgtagacta atgtccttat ttaaggagta
     3001 aataatgaac aaagagacac aacccatcga ccgcgaaacg ctgttgaaag aggccaacaa
     3061 aatcattcgt gagcatgagg atacgctcgc agggattgaa gccaccggcg tcacgcagcg
     3121 taatggcgtg ctggtattta ccggcgacta ctttttagat gaacaaggat tgccaacagc
     3181 caaaagcacc gcggtgttta atatgttcaa acacctggcc catgtgcttt cagaaaaata
     3241 tcatctggtt gattaaagca aaacgcgagg tcttagcctc gcgtttgtct tttacatcaa
     3301 tggcttttga ccccgctgcc accagcgtag caacaatcga tcggcgctct ctgccgcgct
     3361 gccggtgaat cggtcaatga gtcgtttaca ctgcatatag cgtacattaa ccacttcacg
     3421 gccttccatc aggctaagaa taacttcatc actggtgttg atttcatcaa ccaggccttt
     3481 ctctaccgcc tgttgtccgt accagtgttc acctgttgcc acctgttcaa tatccagaga
     3541 cggacgcata cgcttcacaa aatctttaaa caactgatgc gtttcgttca actcttcgcg
     3601 gaatttctcc cgcccttctt cggtattttc acccagcaac gtcagagtac gcttatactg
     3661 cccggcagtg tgcagttcga tatcaatata tttgcttttc aggaagcggt taaagttggg
     3721 catttgcgcc accaccccaa tggaacccac aatagcaaac ggtgcggaaa caattttgtc
     3781 cgccacacag gccatcatgt aaccgccgct ggcagcgact ttgtctaccg taacagttaa
     3841 aggaatgttt ttatcacgca gacgctgcag ctgcgaagcc gccaacccgt aaccatgcac
     3901 catgccacca gggctttcca gacggagcac aacctgatcc tgcggtttga atgctgcgag
     3961 taccgccgtt atctcttcac gtagcgagtt cacttcatgg gcgtccatgc tgcctttaaa
     4021 atccagcacc cagacgcgag gtttactgtc agttgccacc tcgcccagtt tggctttcgc
     4081 ttttgctgct ttcgcttctt gcttgtgctt tttcttctgc gctttgtgcc actgtttttg
     4141 ctgatgtgag cccatcagcg ccgcggccag ttcttctttc atctccttat actgttcgct
     4201 gagattgttg acccgtaact cgccacgctg gcgtttatta cgttgagcaa cattgacaat
     4261 aatggcggca atcgccgcaa tcgctagcac aacggtaacg attttcgcca aaaacaaacc
     4321 atattcagac aacaattcca cgagtcccca ccttggttaa acaacgcttt ggctcacagt
     4381 ttacaacagg catgttaagc cgtctcgcag agatgttatt gcagcgaaag tatgacaaag
     4441 tatccatttt gcggtgttat cgccccaggc tgattgaaat gcccttctgt ttcaggcata
     4501 aagccccaaa gtcataaagt acactggcag cgcgacagac aacgtcgttg aggagtagcc
     4561 atgcattacc agccaaaaca agatttactc aatgatcgca ttatcctggt gacgggagcc
     4621 agcgatggga ttggtcgtga agccgcgatg acgtatgcac gctatggtgc gacagtgatt
     4681 ctgttgggcc gtaatgaaga aaaattacgt caggtagcca gccacataaa cgaagaaact
     4741 gggcgtcagc cacagtggtt tattctcgat ttgctgacct gcacgtccga aaattgccaa
     4801 caactggcac agcgcattgt cgttaattat ccgcgtctgg atggtgtttt gcataatgcc
     4861 ggattgctcg gcgatatttg cccaatgagc gaacaaaatc cgcaggtctg gcaggacgtc
     4921 atgcaggtca acgttaatgc cacctttatg ctcacccagg cactgcttcc tttattactc
     4981 aaatcggacg ccggttcact ggtctttact tcatcaagcg ttggacgtca gggacgagct
     5041 aactggggtg catatgcagc gtcgaaattt gccaccgaag ggatgatgca ggtactggcc
     5101 gatgaatatc agcagcgcct gcgcgtcaac tgcattaacc caggcggtac gcgcaccgca
     5161 atgcgcgcaa gcgccttccc gaccgaagat ccacagaaac ttaaaacacc cgctgatatc
     5221 atgccgctct acctctggct gatgggcgat gacagccgcc gtaaaaccgg catgaccttt
     5281 gacgcccaac cgggccgtaa accaggaatt tcccaatgag tgatgaacgc taccaacagc
     5341 gtcagcagcg agtgaaagaa aaagtagatg ctcgtgtggc acaggcccca ggatgaacgc
     5401 ggtattatca tcgtctttac cggcaatgga aaaggcaaaa ccaccgcggc atttggtacg
     5461 gcaacacgcg cagttggtca cggaaaaaaa gtgggcgtcg tgcagtttat taaaggcacc
     5521 tggcctaatg gcgaacgcaa tctgctggaa ccacatggcg ttgagtttca ggtgatggca
     5581 acgggcttta cctgggatac acaaaaccgc gagtctgata ccgccgcctg ccgcgaagtc
     5641 tggcaacatg caaagcggat gcttgctgat tcctcactgg atatggtttt gcttgatgaa
     5701 ctgacgtata tggtggcgta tgactatttg ccactggaag aagtggtgca ggcgttaaat
     5761 gaacgtccac atcaacagac ggtgattatc acgggtcgag gctgtcatcg ggatattctt
     5821 gaactggcgg atacggtaag tgagctgcgc cccatcaaac atgcgtttga tgccggtgtt
     5881 aaggcgcaaa tagggattga ttattaatct gtaaaaatgc cggatatgac gtccggcata
     5941 ctttgattaa ccgttattac gcccgccaga acgacgaccg ccgctcacct gactgtgacg
     6001 tttcaccgca cgacgaatct gattagcctt catgcgacga cggtcttttt ctacagcgac
     6061 tttagagctg gtttctggcg gaagctccac cagttcgcgc agatagttag tctgggcgag
     6121 gtccagctcc gtccagccac cgcgtggcag accttttggc agtgggatat caccgtaacg
     6181 aacacggatc aggcggctca cctgcacacc aaccgcttcc cacagacgac gaacttcacg
     6241 gttacggcct tcggtcagag tcacgttgta ccactggttg atcccttcgc cgccgctgaa
     6301 cttgatggtt ttaaaagctg ccggaccatc ttccagttgc acgccacgac tcaaatcacg
     6361 cagtttcgcg tcgtcaacct gaccaaatac acgcacggcg tattcacgtt caacttcacg
     6421 gcttggatgc attaaacggt ttgccagttc accatcggtg gtgaacagca gcagaccaca
     6481 ggtgttaacg tccagacgac ctacggcaat ccagcgtgcg ccacgcagct ttggcagacg
     6541 gtcaaacacc gtcggacgcc cttccggatc gttacgggta cacaactcac cttccggttt
     6601 gtaataggcc agaacgcgac aaatttgttc agcggactca cgtaccgaaa tcagatgacc
     6661 atcgatacga attttcagcc caggggtaac ttcaacgcga tcgccgagtt tagcaatttt
     6721 gccatcaaca ctcacacgac cggcttcaat aatagattcg atttcacggc gggagccgtg
     6781 gccagcgcgg gccagcactt tctgtaattt ttcgctcata gagcttcctt ttggtgtcgc
     6841 cttcccaggc gtctgatatg cttttgtgca acagtgagtc agaacttaca tctgactcac
     6901 tgatagtaaa gtctgtttga actcttcagg ccttaagtaa acgactcgac gtttatcggc
     6961 ctggctttga ggcgcaacat actacactat ctttatggtt aaagcttgtt tcgattaaca
     7021 tcagcttaat taccagccac caccgcctcc gccacccgcg ccgccgccag caccaccacc
     7081 ggaataactt cgccccaaca aactggtatt ggccccgcaa cttaggtgcg tctgtaatga
     7141 gaataaaacg ccgttacggg caatctctgg agcgcgaatc gccgaagaaa gcgaaggggc
     7201 aatgcgtaac gcccattccc tccccaaatt tgccgatata gcccaaccta gcaacgcgta
     7261 atccagtttc cgtgtttccc ctttccgccg acgtccactg tgtgttgctg cctctttacg
     7321 cgcaagatag ttaacgatag cttcaccgcg ggcataacgt tgctgcccag tttgggtaaa
     7381 ctttggcaga aaaatatacc ccatgccagt gagataaccg gtcaggcaaa cagcgctaaa
     7441 ataacccgct ggcatatacc agtaaaagaa tacatctccg acattgatat agagagaata
     7501 gaaggccacg cctgaacaaa tcagtggtaa aaacaaagtg atgattgcac gattaacgca
     7561 aggcttgtca tcatcgcggg caaacaaaag ctcaagggaa caaaataaaa aaggaataat
     7621 ccagcagatc ataataaaca tatcgcctac cagactcatt cctgcccaac ctacgggact
     7681 caggttaccg tagagaatga tcgccaatat tgccagtcca ccccattgca aaaacgtatc
     7741 aggccggtaa aacaaagact ttttacgcgg cagataaaat ttctgcatcc gtaaaaatgc
     7801 cctgcgtaag actctgttgc gtctccccgt aagaacgacc ttatcgcctt tacgaaataa
     7861 cgcttccagt aataactgct ctgcgggcag taatacctca ttatttctgg tcgcgccttc
     7921 attaacacaa atcaggattt gctggttctt atcatactga tcttccagat gaatttttcc
     7981 cttcacgatc agatttacga tatcggcaca gaaaccttta tcgtcgtaaa ccagcttcgc
     8041 atcgagacgt aacatgccgg gcgtgtaatc tggcggaatg acatcggttt caatcacatc
     8101 taccggcgta aattgcggcc tgcgcttcca gagatataac catccacaaa ccaggaataa
     8161 acacggaaac caaattaaca acgatgacgt ggagggtaaa agaagatggc tgaaaatatt
     8221 cgtcgtttgt ggagccgggg cattgctaag taacgcgtga ggccagcggt agagtaccgt
     8281 gaaatcttca cgataaaacg gatcgcggga ttcaattctt ccgtcctcaa ggatgcggcc
     8341 atttcgatat gtgtcgccct cttctccagt aaagagatcg atttcgctaa atggattacc
     8401 cgcgatatca gggaacttga gtgaaaatcg ggtcttatag atttcaaacg gccagtggtt
     8461 accagtcacg ttccagatta acagatctga atctccctca cgcaggaaag catttttaac
     8521 ctgataatga atttgataat gatagtcgcc ttgaggcaag aaacgttgtt tatcgcccac
     8581 gacaatactc attaacccga tatgccagtc aagatgccag ggttcaggaa taccatcacg
     8641 agtgacgcca acaatatgat agttcagcag tgcagcgtcc ccatcaggct gcatccagag
     8701 tcgtggtaaa tcacgataaa atccgtgctt aatctgctga tttcgcgcct gaaaatgaat
     8761 attttctttg atgtcgagca ccccatccgg ttgcagagtg gcttcaacat caaagagcga
     8821 gatcccttct tcataagaag ggatctccgg gttttctgca taacttagag atgatacaaa
     8881 cagccctgct atcaacagca aaatgcagcg aaacttccct gccatagtct tccatccgtg
     8941 gaacgcaatt tgttataaga aaggcttcac atcacccacg ccttcacgca ccacgaccgg
     9001 cgtatcatcg gtaagatcaa tgaccgttgt cggtttctgt ccgagatagc cgccgtggat
     9061 aatcaaatcc acctgttttt ccagacggtc tttaatttct tctggatcgg attcggtaaa
     9121 ttcgctgcct ggcagcatta gcgaagtgga aagcatcggt tcgcccagtg cttcaagcaa
     9181 cgcctgcgca atcgggttag aaggcacacg cataccgatg gttttgcgtt tttcctgcaa
     9241 cagacggcgt ggcacctcct tcgtcccctt caggatgaag gtatagttgc ccggcgtgtt
     9301 gtttttcatt aaacgaaacg caacgttatc cacgaatgaa taggtcgaaa gttcagaaag
     9361 atcgcgacac atcagggtaa agttgtgacc gtccggcagc tggcgaatac gacaaatacg
     9421 ctccatcgcg tttttatctt caattttaca gccgagcgca tagccggaat cagttggata
     9481 aacaatcacc ccgcctttac gcacgatctc caccgcctgg ttgatcagac gttgctgcgg
     9541 gttatcagga tgaatataaa aaaactggct cataattccc tctctgtggt gttctgcggc
     9601 tgttcccata gctgccagac gccttcaacg cctgcgggca gccagagttt acgacccagt
     9661 tcgatccacg ggcatggctg atgaaaatca gatccttgtg atgcccataa atgatgctga
     9721 cgcgcaagtg tcgtcaactg ggtgcgttca ttgggcgatt gctggcactg cgcgacttcc
     9781 atcgcgtcgc cgtggtgttc ggcaaaatgc gcaaccaatc ttttcagcca tttagcacta
     9841 agattgtacc gcccaggatg agctagcacc gccttaccgc cagaatgatg aatgacatca
     9901 atagcttgtt ctattgtaca ccactgtggc ggaacgtatc cggttttccc gcgcgccaga
     9961 tactttttaa agacatctgc cattgaactg gctttgccgc actcaacaag gaaacgcgca
    10021 aaatgaccgc gcgtcactgc gccgccctgc gccagtcgtt gtgcgccttc cagcgcccca
    10081 ggtatttgcg ctttttcaag tctttcggca atttgctgcg cccgctgatt gcgccgttct
    10141 gtctgctgcg cgaggaactc acacattagc ggatgagtaa tatcaatatt cagcccgaca
    10201 atatgaattt catgattttc ccagaccgtg gaaatttcca cgccgggaat aagattcagc
    10261 gccagtcccg aacgtgaaat ttcctctctt gctggcgcga ttgcagctgt ggtgtcatgg
    10321 tcggtgatcg ccagggtgcc gacgcgcatc tcgactgcac ggtgcaccaa tgcttctggc
    10381 gtcaggcagc catcggaagc tgtggtatgg ctgtgcaggt cgtaaatcac tgcgtaattc
    10441 gtgtcgctca aggcgcactc ccgttctgga taatgttttt tgcgccgaca tcataacggt
    10501 tctggcaaat attctgaaat cagctgttga caattaatca tcgaactagt taactagttc
    10561 gcaagttcac gtaaaaaggg tatcgacaat gaaagcaatt ttcgtactga aagcttggtg
    10621 gcgcacttcc tgaaacgggc agtgtattca ccatgcgtaa agcaatcaga tacccagccc
    10681 gcctaatgag cgggcttttt tttgaacaaa attagagaat aacaatgcaa acacaaaaac
    10741 cgactctcga actgctaacc tgcgaaggcg cttatcgcga caacccgact gcgctttttc
    10801 accagttgtg tggggatcgt ccggcaacgc tgctgctgga atccgcagat atcgacagca
    10861 aagatgattt aaaaagcctg ctactggtag acagtgcgct gcgcattaca gcattaggtg
    10921 acactgtcac aattcaggca ctttccggca acggcgaagc cctgctgaca ctactggata
    10981 acgccctgcc tgcgggtgtg gaaaatgaac aatcaccaaa ctgccgtgtg ctgcgcttcc
    11041 cccctgtcag tccactgctg gatgaagacg ctcgcttatg ctccctttcg gtttttgacg
    11101 ctttccgttt attgcagaat ctgttgaatg taccgaagga agaacgagaa gcaatgttct
    11161 tcggcggcct gttctcttat gaccttgtgg cgggatttga agatttaccg caactgtcag
    11221 cggaaaataa ctgccctgat ttctgttttt atctcgctga aacgctgatg gtgattgacc
    11281 atcagaaaaa aaacacccgc attcaggcca gcctgtttgc tccgaatgaa gaagaaaaac
    11341 aacgtctcac tgctcgcctg aacgatcttc gccagcagct gaccgaagcc gcgccgccgc
    11401 tgccggtggt ttccgtgccg catatgcgtt gtgaatgtaa ccagagcgat gaagagttcg
    11461 gtggcgtggt gcgtttgttg caaaaagcga ttcgcaccgg agaaattttc caggtggtgc
    11521 cgtctcgccg tttctctctg ccctgcccgt caccgctggc ggcctattac gtgctgaaaa
    11581 agagtaatcc cagcccgtac atgtttttta tgcaggataa tgatttcacc ctgtttggcg
    11641 cgtcgccgga aagttcgctc aagtatgacg ccaccagccg ccagattgag atctacccga
    11701 ttgccggaac acgcccgcgc ggtcgtcgcg ccgatggttc actggacaga gacctcgaca
    11761 gccgcatcga actggaaatg cgtaccgatc ataaagagct ttctgaacat ctgatgctgg
    11821 tggatctcgc ccgtaatgat ctggcacgca tttgcacccc cggcagccgc tacgtcgccg
    11881 atcttaccaa agttgaccgt tactcttacg tgatgcacct ggtctcccgc gtggtcggtg
    11941 agctgcgcca cgatctcgac gccctgcacg cttaccgcgc ctgtatgaat atggggacgt
    12001 taagcggtgc gccgaaagta cgcgccatgc agttaattgc cgaggcggaa ggtcgtcgcc
    12061 gcggcagcta cggcggcgcg gtaggttatt tcaccgcgca tggcgatctc gacacctgca
    12121 ttgtgatccg ctcggcgctg gtggaaaacg gtatcgccac cgtgcaagcc ggtgctggca
    12181 tagtccttga ttctgttccg cagtcggaag ccgacgaaac ccgtaataaa gcccgcgctg
    12241 tactgcgcgc tattgccacc gcgcatcatg cacaggagac tttctgatgg ctgacattct
    12301 gctgctcgat aatatcgact cttttacgta caacctggca gatcagttgc gcagcaatgg
    12361 gcataatgtg gtgatttacc gcaaccatat tccggcgcag accttaattg aacgcctggc
    12421 gacgatgagc aatccggtgc tgatgctttc tcctggcccc ggtgtgccga gcgaagccgg
    12481 ttgtatgccg gaactcctca cccgcttgcg tggcaagctg cccattattg gcatttgcct
    12541 cggacatcag gcgattgtcg aagcttacgg gggctatgtc ggtcaggcgg gcgaaattct
    12601 ccacggtaaa gcctccagca ttgaacacga cggtcaggcg atgtttgccg gattaacaaa
    12661 cccgctgcca gtggcgcgtt atcactcgct ggttggcagt aacattccgg ccggtttaac
    12721 catcaacgcc cattttaatg gcatggtgat ggcagtacgt cacgatgcgg atcgcgtttg
    12781 tggattccag ttccatccgg aatccattct tactacccag ggcgctcgcc tgctggaaca
    12841 aacgctggcc tgggcgcagc ggaaactaga gccaaccaac acgctgcaac cgattctgga
    12901 aaaactgtat caggcgcaga cgcttagcca gcaagaaagc caccagctgt tttcagcagt
    12961 ggtacgtggc gaactgaaac cggaacaact ggcggcggcg ctggtgagca tgaaaattcg
    13021 cggcgagcac ccgaacgaga tcgccggagc agcaaccgcg ttactggaaa acgccgcgcc
    13081 gttcccgcgc ccggattatc tgtttgccga tatcgtcggc accggtggtg acggcagtaa
    13141 cagcatcaat atttccaccg ccagtgcgtt tgtcgccgcg gcctgtgggc tgaaagtggc
    13201 gaaacacggc aaccgtagcg tctccagtaa atctggttcg tccgatctgc tggcggcgtt
    13261 cggtattaat cttgatatga atgccgataa atcgcgccaa gcgctggatg agttaggcgt
    13321 atgtttcctc tttgcgccga aatatcacac cggatttcgc catgcgatgc cggttcgcca
    13381 gcaactgaaa acccgcactc tgttcaacgt gctgggacca ttgattaacc cggcgcatcc
    13441 gccgctggcg ttaattggtg tttatagtcc ggaactggtg ctgccgattg ccgaaacctt
    13501 gcgcgtgctg gggtatcaac gcgcggcggt agtgcacagc ggcggtatgg atgaagtttc
    13561 attacacgcg ccgacaatcg ttgccgaact gcatgacggt gaaattaaga gctatcagct
    13621 aactgcagaa gattttggcc tgacacccta ccaccaggag caactggcag gcggaacacc
    13681 ggaagaaaac cgtgacattt taacacgctt gttacaaggt aaaggcgacg ccgctcacga
    13741 agcagccgtc gcggcgaatg tcgccatgtt aatgcgcctg catggccatg aagatctgca
    13801 agccaatgcg caaaccgttc ttgaggtact gcgcagtggt tccgcttacg acagagttac
    13861 cgcactggcg gcacgagggt aaatgatgca aaccgtttta gcgaaaatcg tcgcagacaa
    13921 ggcgatttgg gtagaaaccc gcaaacagca gcaaccgctg gccagttttc agaatgaggt
    13981 tcagccgagc acgcgacatt tttatgatgc gctacagggt gcacgcacgg cgtttattct
    14041 ggagtgcaag aaagcgtcgc cgtcaaaagg cgtgatccgt gatgatttcg atccggcacg
    14101 cattgccgcc atttataaac attacgcttc ggcaatttcg gtgctgactg atgagaaata
    14161 ttttcagggg agctttgatt tcctccccat cgtcagccaa atcgccccgc agccgatttt
    14221 atgtaaagac ttcattatcg acccttacca gatctatctg gcgcgctatt accaggccga
    14281 tgcctgctta ttaatgcttt cagtactgga tgacgaccaa tatcgccagc ttgcagccgt
    14341 cgctcacagt ctggagatgg gggggctgac cgaagtcagt aatgaagagg aactggagcg
    14401 cgccattgca ttaggggcaa aggtcgttgg catcaacaac cgcgatctgc gtgatttgtc
    14461 gattgatctc aaccgtaccc gcgagcttgc gccgaaactg gggcacaacg taacggtaat
    14521 cagcgaatcc ggcatcaata cttacgctca ggtgcgcgag ttaagccact tcgctaacgg
    14581 ttttctgatt ggttcggcgt tgatggccca tgacgatttg cacgccgccg tgcgccgggt
    14641 gttgctgggt gagaataaag tatgtggcct gacgcgtggg caagatgcta aagcagctta
    14701 tgacgcgggc gcgatttacg gtgggttgat ttttgtcgcg acatcaccgc gttgcgtcaa
    14761 cgttgaacag gcgcaggaag tgatggctgc ggcaccgttg cagtatgttg gcgtgttccg
    14821 caatcacgat attgccgatg tggtggacaa agctaaggtg ttatcgctgg cggcagtgca
    14881 actgcatggt aatgaagatc agctgtatat cgatacgctg cgtgaagctc tgccaacaca
    14941 tgttgccatc tggaaagcat taagcgtcgg tgaaaccctg cccgcccgcg agtttcagca
    15001 cgttgataaa tatgttttag acaacggcca gggtggaagc gggcaacgtt ttgactggtc
    15061 actattaaat ggtcaatcgc ttggcaacgt tctgctggcg gggggcttag gcgcagataa
    15121 ctgcgtggaa gcggcacaaa ccggctgcgc cggacttgat tttaattctg ctgtagagtc
    15181 gcaaccgggc atcaaagacg cacgtctttt ggcctcggtt ttccagacgc tgcgcgcata
    15241 ttaaggaaag gaacaatgac aacattactt aacccctatt ttggtgagtt tggcggcatg
    15301 tacgtgccac aaatcctgat gcctgctctg cgccagctgg aagaagcttt tgtcagcgcg
    15361 caaaaagatc ctgaatttca ggctcagttc aacgacctgc tgaaaaacta tgccgggcgt
    15421 ccaaccgcgc tgaccaaatg ccagaacatt acggctggga cgaacaccac gctgtatctg
    15481 aagcgcgaag atttgctgca cggcggcgcg cataaaacta accaggtgct cggtcaggct
    15541 ttactggcga agcggatggg taaaaccgaa atcatcgccg aaaccggtgc cggtcagcat
    15601 ggcgtggcgt cggcccttgc cagcgccctg ctcggcctga aatgccgtat ttatatgggt
    15661 gccaaagacg ttgaacgcca gtcgcctaac gtttttcgta tgcgcttaat gggtgcggaa
    15721 gtgatcccgg tacatagcgg ttccgcgacg ctgaaagatg cctgtaacga ggcgctgcgc
    15781 gactggtccg gcagttatga aaccgcgcac tatatgctgg gcaccgcagc tggcccacat
    15841 ccttatccga ccattgtgtg tgagtttcag cggatgattg gcgaagaaac gaaagcgcag
    15901 attctggaaa gagaaggtcg cctgccggat gccgttatcg cctgtgttgg cggcggttcg
    15961 aatgccatcg gcatgtttgc agatttcatc aacgaaacca acgtcggcct gattggtgtg
    16021 gagccgggtg gtcacggtat cgaaactggc gagcacggcg caccgctaaa acatggtcgc
    16081 gtgggcattt atttcggtat gaaagcgccg atgatgcaaa ccgaagacgg gcagattgaa
    16141 gaatcttact ccatctccgc cggactggat ttcccgtctg tcggcccaca acacgcgtat
    16201 cttaacagca ctggacgcgc tgattacgtg tctattaccg atgatgaagc ccttgaagcc
    16261 ttcaaaacgc tgtgcctgca cgaagggatt atcccggcgc tggagtcttc ccacgccctg
    16321 gcccatgcgc tgaaaatgat gcgcgaaacc ccggaaaaag agcagctact ggtggttaac
    16381 ctttccggtc gcggcgataa agacatcttc accgttcacg atattttgaa agcacgaggg
    16441 gaaatctgat ggaacgctac gaatctctgt ttgcccagtt gaaggagcgc aaagaaggcg
    16501 cattcgttcc tttcgtcacg ctcagggatc cgggcattga gcagtcattg aaaattatcg
    16561 atacgctaat tgaagccggt gctgacgcgc tggagttagg tatccccttc tccgacccac
    16621 tggcggatgg cccgaccatt caaaacgcca ctctgcgcgc ctttgcggca ggtgtgactc
    16681 cggcacaatg ttttgaaatg ctggcactga ttcgccagaa acacccgacc attcccattg
    16741 gcctgttgat gtatgccaat ctggtgttta acaaaggcat tgatgagttt tatgcccagt
    16801 gcgagaaagt cggcgtcgat tcggtgctgg ttgccgatgt gccagttgaa gagtccgcgc
    16861 ccttccgcca ggccgcgttg cgccataatg tcgcacctat cttcatctgc ccgccaaatg
    16921 ccgatgacga cctgctgcgc cagatagcct cttacggtcg tggttacacc tatttgctgt
    16981 cacgagcggg cgtgaccggc gcagaaaacc gcgccgcgtt acccctcaat catctggttg
    17041 cgaagctgaa agagtacaac gctgcacctc cattgcaggg gtttggtatt tccgccccgg
    17101 atcaggtaaa agcagcgatt gatgcaggag ctgcgggcgc gatttctggt tcggccattg
    17161 ttaaaatcat cgagcaacat attaatgagc cagagaaaat gctggcggca ctgaaagttt
    17221 ttgtacaacc gatgaaagcg gcgacgcgca gttaatccca cagccgccag ttccgttggc
    17281 ggcattttaa ctttctttaa tgaagccgga aaaatcctaa attcatttaa tatttatctt
    17341 tttaccgctt cgcttacccc tgtcgaacgt caacttacgt catttttccg cccaacagta
    17401 atataatcaa acaaattaat cccgcaacat aacaccagta aaatcaataa ttttctctaa
    17461 gtcacttatt cctcaga
//
LOCUS       DAJVUY010000085        16878 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.085, whole genome shotgun sequence.
ACCESSION   DAJVUY010000085 DAJVUY010000000
VERSION     DAJVUY010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16878
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.085"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            193..2040
                     /gene="ldtD"
                     /locus_tag="OQQ72_002512"
     CDS             193..2040
                     /gene="ldtD"
                     /locus_tag="OQQ72_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS2012200.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2221..2769
                     /locus_tag="OQQ72_002513"
     CDS             2221..2769
                     /locus_tag="OQQ72_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HCS2012201.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2796..3443
                     /gene="gloC"
                     /locus_tag="OQQ72_002514"
     CDS             2796..3443
                     /gene="gloC"
                     /locus_tag="OQQ72_002514"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HCS2012202.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3665..4855)
                     /gene="aspC"
                     /locus_tag="OQQ72_002515"
     CDS             complement(3665..4855)
                     /gene="aspC"
                     /locus_tag="OQQ72_002515"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HCS2012203.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARMAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5040..6128)
                     /gene="ompF"
                     /locus_tag="OQQ72_002516"
     CDS             complement(5040..6128)
                     /gene="ompF"
                     /locus_tag="OQQ72_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HCS2012204.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQF"
     gene            complement(6730..8130)
                     /gene="asnS"
                     /locus_tag="OQQ72_002517"
     CDS             complement(6730..8130)
                     /gene="asnS"
                     /locus_tag="OQQ72_002517"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCS2012205.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8299..9501)
                     /gene="pncB"
                     /locus_tag="OQQ72_002518"
     CDS             complement(8299..9501)
                     /gene="pncB"
                     /locus_tag="OQQ72_002518"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HCS2012206.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9767..12379
                     /gene="pepN"
                     /locus_tag="OQQ72_002519"
     CDS             9767..12379
                     /gene="pepN"
                     /locus_tag="OQQ72_002519"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HCS2012207.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12422..13173)
                     /gene="ssuB"
                     /locus_tag="OQQ72_002520"
                     /pseudo
     CDS             complement(12422..13173)
                     /gene="ssuB"
                     /locus_tag="OQQ72_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13170..13907)
                     /gene="ssuC"
                     /locus_tag="OQQ72_002521"
                     /pseudo
     CDS             complement(13170..13907)
                     /gene="ssuC"
                     /locus_tag="OQQ72_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001714028.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13972..15117)
                     /gene="ssuD"
                     /locus_tag="OQQ72_002522"
                     /pseudo
     CDS             complement(13972..15117)
                     /gene="ssuD"
                     /locus_tag="OQQ72_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15114..16073)
                     /gene="ssuA"
                     /locus_tag="OQQ72_002523"
     CDS             complement(15114..16073)
                     /gene="ssuA"
                     /locus_tag="OQQ72_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein SsuA"
                     /protein_id="HCS2012208.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGMRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16066..16641)
                     /gene="ssuE"
                     /locus_tag="OQQ72_002524"
     CDS             complement(16066..16641)
                     /gene="ssuE"
                     /locus_tag="OQQ72_002524"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HCS2012209.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFVP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
BASE COUNT         4235 a         4354 c         4292 g         3997 t
ORIGIN      
        1 cataacggcg cgcttttctt taaacttctt tacattaggt tatgtaaaaa cgtatcggcg
       61 tttatatact gaagataagc ctgatgagta acaggcttgc tcgtcatact ttcgtgagta
      121 ttggcgttgt acaggcaagt cgtaaaataa cagcctggct attcagagta tgataaaaac
      181 agggggcaag ggatgttgct taatatgatg tgtggtcgtc ggctgtcggc aatcagtttg
      241 tgcctggccg taacattcgc tccactgttc aatgcgcagg ccgatgagcc tgaagtaatc
      301 cctggcgaca gcccggtggc tgtcagtgaa cagggcgagg cactgccgca ggcgcaagcc
      361 acggcaataa tggcggggat ccagccattg cctgaaggtg cggcagaaaa agcccgcacg
      421 caaatcgaat ctcaattacc cgcaggttac aagccggttt atcttaacca gcttcaactg
      481 ttgtatgccg cacgcgatat gcaacccatg tgggaaaacc gtgatgctgt taaagccttc
      541 cagcaacagc tggcagaggt ggcgattgcc ggtttccagc cgcagtttaa taaatgggta
      601 gagttactga ccgatcctgg tgttaacggg atggcacgcg acgtagtgct ctctgatgcg
      661 atgatgggct atctccattt cattgcaaat attccggtca aaggcactcg ctggctatat
      721 agcagtaaac cttatgcact tgcaacgccg ccgctctcgg tgattaacca atggcagctg
      781 gcgctggata aaggtcaatt gcctacgttt gttgcaggac tggcaccgca gcatccgcaa
      841 tatgcggcga tgcatgaatc gttactggcc ttactcagtg acaccaaacc gtggccccaa
      901 ctgaccggca aagcaacgtt gcgcccaggg cagtggagta acgacgtacc ggcgttgcgc
      961 gaaatattgc aacgcacagg catgttggac ggggggccga aaattactct acctggcgat
     1021 gacacgccaa ctgacgcggt agtcagccca tccgctgtta ctgttgaaac agcagaaact
     1081 aagccgatgg acaagcaaac gacgtctcgt agtaaacctg cgcctgccgt tcgcgccgcc
     1141 tacgataatg aactggtgga agccgttaaa cgttttcagg catggcaagg attgggggca
     1201 gatggtgcta ttggcccggc aacacgtgac tggttaaacg taacgcccgc ccagcgtgct
     1261 ggcgtgttgg ctctcaacat ccagcgattg cgcttgctgc caacagagct ttctaccggg
     1321 atcatggtta acattccggc ctattcgctg gtctactatc agaacggcaa tcaggtgctg
     1381 gattcgcgag tcattgtcgg tcgccccgat cgcaaaacgc cgatgatgag cagtgccctt
     1441 aacaacgtag tggtaaaccc gccgtggaac gtacctccaa ctctggcacg caaagatatt
     1501 ctgccaaaag tgcgcaacga tccgggatat ctcgaaagcc atggctatac ggtgatgcgt
     1561 ggctggaaca gcagagaagc gattgaccca tggcaggttg actggtctac aatcacggcc
     1621 tcgaatttac cgttccgctt ccagcaggct ccaggcccac ggaactcgct ggggcgctat
     1681 aaattcaata tgccgagttc agaggccatt tatttgcatg acacgccgaa ccacaatctg
     1741 ttcaagcgtg atacacgcgc attgagctca ggctgtgtac gagtgaataa agcttccgat
     1801 ctggcgaata tgctgttgca ggatgcaggc tggaatgaca aacgtatttc tgatgcgctg
     1861 aagcagggtg atacacgtta cgtcaatatt cggcagtcga ttccggtgaa tctctactac
     1921 ctgacggcct ttgttggtgc agatggtcgt acccagtatc gtacagatat ttacaattat
     1981 gatctgcctg cgcgatccag ctcgcaaatc gtatcgaaag cggaacaatt aatcaggtaa
     2041 atgaagtagt tcggggaaat cagttgtcgt aataattagc atgattgggg gcgattctct
     2101 gcagcccccg tcactgctgg ggttgagtca tcttgacgtc tgctttacgg gcggttaagg
     2161 tgcctcttgt gcgccagaag tgcatataaa cgataacatt gacctgtaga cttgattatc
     2221 atggacaaat tcgacgctaa tcgccgcaaa ttgctggcgc ttggtggcgt tgcactcggt
     2281 gccgccatcc tgccgacccc tgcgtttgca acactctcta ccccacgccc gcgcattttg
     2341 acactcaata atcttcatac cggagagtca atcaaagcgg agtttttcga tggcagaggc
     2401 tatattcagg aagaattggc aaaacttaac cattttttcc gcgattaccg cgcgaacaaa
     2461 ataaagtcca tcgacccagg attattcgac cagttgtatc gcctgcaagg gttgttaggc
     2521 acgcgcaaac cggtgcaact catttccggt tatcgttcca ttgataccaa caatgaacta
     2581 cgcgcccgca gccgtggagt agcgaagaaa agctatcaca ctaaaggcca ggcgatggat
     2641 ttccatattg aaggtatcgc gttaagcaat attcgcaaag ccgcgttatc tatgcgcgca
     2701 ggtggtgtag gatattaccc acgtagtaac tttgtgcata ttgataccgg gccagcacgg
     2761 cactggtagc aatcgcttaa cgaaacaggg gcagtatgaa ctatcgtatt attccggtca
     2821 ccgcattctc ccagaactgt tcattaatct ggtgtgaaca aacccgtctg gccgcactgg
     2881 tcgatcctgg cggcgatgcg gaaaaaatca aacaggaagt tgatgacagc ggcctgacac
     2941 tgatgcagat cctgctgacg catggtcatc tggaccacgt tggcgcagcg gcggaactgg
     3001 cgcaacatta cggcgtgccg gtttttggcc cggaaaaaga agatgagttc tggctgcaag
     3061 gcttgcctgc gcaaagtcgt atgtttggtc tggaagagtg ccagccgctg acgccagatc
     3121 gttggctgaa cgaaggcgat accatcagca taggaaatgt gactttacag gtgttacatt
     3181 gccctgggca tacgccgggt catgtcgtgt tttttgatga tcgggcaaag ctgctgattt
     3241 ctggcgatgt tattttcaaa ggcggagtag ggcgcagtga cttcccgcgt ggcgatcata
     3301 atcaactgat ttcttcaatc aaagataaat tgctgccact gggggatgac gtgacattta
     3361 ttccgggtca cggaccatta tccacacttg gttatgaacg cctgcataat cccttcctgc
     3421 aagacgaaat gcccgtctgg taaggcacat aaaaaagccc gcttttaatg cgggcctgga
     3481 tttctggcaa agtgcgcttt gtttatgccg gatgcggcac gagcgcctta tccggcctac
     3541 aaaatcgtgc aaattcaaaa tattgcaggg gacgcgtagg cctgataagc gtagcgcatc
     3601 aggcaatgtt gcgtttgtca tcagtctcag cccgcttttc agcgggcttc attgttttta
     3661 atgcttacag cactgccaca atcgcttcgc acagcggagc catgttatct ggtgtcatcc
     3721 cggccacatt tacgcgacca gaagcaaccg catatacgcc aaactcttcg cgcagacgca
     3781 gcacttgttc ttttgtcagg ccactgaagg agaacatgcc gttctgtttg atgataaagc
     3841 tgaagtcgcg gtttgcgcct ttttcctgca gcgtattgac gaacaactga cgcatacgct
     3901 gaatacgctg gcgcatatca gtcagctctt gttcccaaat cgcacgtaac gcatcgttgc
     3961 tcaggatggt ggcaacaaca gaagcgccgt gtgctggtgg gttagagtag ttagcgcgaa
     4021 tcgccgcttt catttggctg aatgcgcgat caacggtttc actgtcggca gcaaccagag
     4081 tacaagcgcc aacacgctcg ttgtacaggc caaagttttt agagtaggaa ctggcaacaa
     4141 tcagctcttt atgcatagcc gcgaaagcgc gcagtccttc agcatcttct tccagaccac
     4201 gggcaaaacc ctggtaagcg aagtcaaaca gcggtaacca gcctttctca acggagagtt
     4261 gtgccagtgt ctgccattgt tccagcgtag ggtcgatacc ggttgggtta tggcagcagc
     4321 catggaacag cactacgtcg ccagcctgag cttcattcag gctgttaatc agtgcatcga
     4381 agtcaagagt gtgattttcc gcatcataat aagcgtattc acgaacttcc agacctgcag
     4441 agttaaagac gctcttatgg ttcggccagc ttgggttgct cacccacact cgcttaacgc
     4501 tggtattttt tgccaggaaa tcggcagcta cgcgtagtgc gccagtgccc cccggagtct
     4561 gtgccatgcg agcacgtttg tcattgatca gggcgctacc tttaccaaac agcagttcct
     4621 gagtgcagcg accaaattca gggatgccgt caatgccgag gtaatttttg gtggtttcat
     4681 tttcgagcag atactgttca gcctttttca cgctggtcag taccggggtt ttgcccgtct
     4741 catctttata gacaccaatc ccgaggttaa ttttgccggg acgttcatcg gcacgaaaca
     4801 gatcggccag gcccagaatc gggtcggcag gagcggcggt aatgttctca aacatgacga
     4861 ggttccatta tggttacaga agggaagtcc gctatcaggg taacgggaga tttacaaaat
     4921 tccaactatt actgatgaaa acgcaggctg tttttgcaag acgtgagatt gctctggaag
     4981 gtataaaaaa aacaggacca aagtcctgtt ttttcggcat ttaacaaaga ggtgtgctat
     5041 tagaactggt aaacgatacc cacagcaacg gtgtcgtctg aacctacgcc cagtttgtta
     5101 tcagaatcga tctggttgat gatgtagtca acataggtgg acatgttttt gttgaagtag
     5161 taggttgcgc ccacttcaaa gtagttcacc agatcaacat caccgatacc ttctacgtct
     5221 ttcgctttag atttggtgta agcgatggac ggacgcagac cgaaatcgaa ctggtattgc
     5281 gcaactaaca gaacgtcttg cgttttgttg gcgaagccgc tggtgtttgt aaatttatta
     5341 gtgatcggcg tagcgttacg ggtttcaccg tagttcgctg ccaggtagat gttgttcgcg
     5401 tcgtacttca gaccagtagc ccactgttca gcttttttac cgttgccaag aggttgagct
     5461 tcttgcaggt tggtacggtc agctgcacca taagcaccaa cgataccaaa gccttcgtat
     5521 tcgtagctga tagaaccgcc aacaccgtcg ccgttagaac ggcgtgcagt gtcacgctcg
     5581 tttttaccca ggtactgaac agcgaagttc aggccatcaa ccagaccaaa gaagttggag
     5641 ttacgatagg tagcaacgcc gccaacacga ccaacgaaga agtcatcgct gtatgcagta
     5701 tcaccaccaa attctggcag catatcggtg taacccagtg catcataaac cacaccgtag
     5761 ttacggccgt aatcgaaaga accaacgtca gcgtatttaa gacccgcgaa tgccagacgc
     5821 gttttgttac cagtttgagc gtcagcgcct tcagagttgt taccttggaa gttatattcc
     5881 cactgaccat aaccggtcag atcggaattg atttgagttt cccctttaaa accaagacgg
     5941 gcataggtca tgtcgccatt gccaccgtaa ctgttttcac cgttaccctt ggaaaaataa
     6001 tgcagaccaa cagctttacc gtacagatct actttgttgc catctttgtt atagatttct
     6061 gcagcgtttg cagtacctgc tactaacaga gcagggacga tcactgccag aatattgcgc
     6121 ttcatcatta tttattaccc tcatggtttt ttttatgaca cctgccactg ccgtcaataa
     6181 gttctgtcaa taaaaattta cggaactatt gatgagagtt tggtgtcttt atgtgtctgc
     6241 aggcatcttt ccattcaaac taacgtttcg ctaccgtgaa agtgctgcaa agataaagat
     6301 ttagtttcaa aaagaaaaaa tatgtaacca aaagtaaaaa ttaaggaact ttgtgaacac
     6361 cgtcatattt ccatagaaac gtgatgatat ttacagcaat ttttatctat ttatatgatt
     6421 tacttatatt taaattaact aagcggaaat tttgtttctg atggaaactt tatcgacctg
     6481 gcacaaaatc ctctttcaga catccagaat gccaaaaaat agtatgaaaa ttgtgctatc
     6541 agctaagaaa aaactaatcc gcaataagaa tacgggttat tttttgtgcg taaatgttgc
     6601 aatgtaatat tccgtaacag gatgatcgtt atggcggggt tgcaaataga ttgcttgact
     6661 taacaaacag ataacttgac agaaaggata aaaaagagcc agcaggcgct ggctctttga
     6721 ggaagaaaat cagaagctgg cgttgcgcgg agtacgtggg aacggaatca catcacgcac
     6781 gttttgcacg ccagttacgt aagcaatcag gcgttcaaaa ccaagaccga aacctgaatg
     6841 cggaacagta ccgtagcgac gcagatcgcg ataccaccag taatcttctt tattcaggcc
     6901 catttccagc atacgctcgt ccagaacgtc cagacgttct tcacgctggg agcctccaat
     6961 gatctcaccg atgcccggag ccagaacgtc catagccgca acggttttac cgtcttcgtt
     7021 gaggcgcata tagaacgctt taatatcttt cggatagttt ttaaccacta ccggtgcttt
     7081 aaagtgttct tccgccagat aacgctcatg ctcagaagag agatcgacgc cccagtaaac
     7141 cgggttttca aacttcctgc cgcagttttc gagaatggtc actgcgtcgg tgtaatccac
     7201 ctgcgcgaaa tcggcctcaa tgaagcgttc cagacgtgaa acggcatctt tatctacgcg
     7261 ttcagcgaag aatttcatgt cgtctgcgcg ttcttcgaga accgctttga agacatattt
     7321 cagcatggct tcagccagac ccgcgatatc gttcaggtta gcaaacgcca cttccggctc
     7381 cagcatccag aattccgcca ggtgacggct ggtgttggag ttttcagcac ggaaagtcgg
     7441 gccgaaggta taaattttgg ataatgcgca agcgtaggtt tcgccgttca actggccaga
     7501 tacggtcagg aaagactctt taccaaagaa gtctttgtcg aaatccactt tgccctgatc
     7561 gttacgcggc aggttttcca gatccagcgt agaaacgcgg aacatttcgc ctgcaccttc
     7621 ggtatcagat gcggtaatca gtggcgttga aacccagaag aatccctgct cgttaaagaa
     7681 gcgatgcagc gcctgcgcca gcgtatggcg aacgcgcgcg acggcaccaa tcaggtttgt
     7741 gcgcggacgc aggtgagcga cttcacgcag atactcaatg ctgtggcgtt ttgccgccat
     7801 cgggtaagtg tctggatctt caacccaacc agcaacttca actttgctgg cctgaatttc
     7861 aaattgttgc ccctggcccg gcgacgccac gactttaccc gtcacaatga ccgagcagcc
     7921 ggtggtcaga cgcaggacgt cttcattgta attgggcaga gaattattga tgacagcctg
     7981 tacaggatca aagcaggaac cgtcataaac ggcgaggaag gagatgccag cttttgaatc
     8041 tcggcgggta cgtacccatc cgcgtacggt gacttcgctg tcaacggcta cgcggccctg
     8101 gagtacgtcg gctacaggca caacgctcat aatattctct ctgttaatag tcggaaaaaa
     8161 taaacacttg tccacccgta aatgggggga tacctatgtt acctggcatc tgcaatcaga
     8221 caagcagaat tcgcaaatgc agcgaaagat ttcggaatta aaggtaaaaa aagggagccg
     8281 attagctccc tgatgatatt aactggcttt tttaatatgc ggaaggtcga acgctttgcg
     8341 cagcgcccga acaaacgctt tatcatggca gatagttttg ccagggctgt cagaaagttt
     8401 cgccaccggt ttaccgttac actctaccaa cttaatcaca atattcaggg gttttacctg
     8461 ggggatatcg caggtcaggc gagtcccaat accaaaactt aattgcacgc gggaagagaa
     8521 gtggcggtat agctcaaccg ctttgcgtaa atccagattg tcagagaaaa ccagcgtttt
     8581 actctgtgga tcaattccca gctttttata atgtgcaatg gctttttcac cccattcaac
     8641 cgggtcgcca gagtcatgac gcaggccctg ataccgactg gcgaactcga caccgaaatc
     8701 acgcaggaaa gcatccatag tgatgcagtc ggttaatgca atgccaagtt ggtcgggata
     8761 ttcttccagc caggcagcaa gtgcagctcg ctggctgttg gctaggtccg ggctgatttg
     8821 ctgatgtgcc tggaaccatt cgtgcgcctg tgttcccatc ggcgtgaggg aaagccgacg
     8881 cgccagatcg tagttgctgg tgcccacgaa ccaggattcc tgttgcagac gcttaacgat
     8941 ggtttcttgt acttcgcgag aaaaacggcg acgggtgcca aaatccatca gatggaagcg
     9001 cgacatatca agaccggcgg ttaacgccga gaagtcgact aatttgcttt ccagcgtgtc
     9061 gagggcttgc gcaacgtcgg cctgcggtga gcgatagcga tgtaccattt cactgataac
     9121 cgccagcaaa ggaacttccc agaggatgac ttcacgccac ggaccgctta agcgaatatc
     9181 cagcttgcca ttatcgttgg acacggtgac ttgttccggg ttaaagcgga attcgcgtaa
     9241 ccagttaaga tagtcggcct taaagaaagg cagggcagag agccactgat attcatcatc
     9301 ctgcaggcgc aggtgctgca tcgcctgaat ctgttcacga atagcatcgg cataaatacc
     9361 cagcagatcg tcacctcggc aacgaaactc cgccgcgaca tgcacatcgt aatagtgatg
     9421 aaacacggct tgctgcatat gcaacttata agcatctgta tccagcaacg agtgcagaac
     9481 aggagaagcg aattgtgtca taggtgcgca gtagcatcct cgtacaggag cgtttagtac
     9541 aataaacatc ttcaggaact gctggagtat accttgtttc gcaatttatt gaaccccgat
     9601 cacaccatat gccacctttc tggtcgatgg cattacgcgg tgtatgttat aaaaatgtag
     9661 caataaaggc gtttgtacct gaaaagatga agattctgca tagcgcgatt tacgcaacag
     9721 gaatagactg aacaccagac tctataaaag atgctaaagg ttatttatga ctcaacagcc
     9781 acaagccaaa taccgtcacg attatcgtgc gccggattac cagattactg atattgactt
     9841 gacctttgac ctcgacgcgc aaaagacggt cgttaccgcg gtcagccagg ctgtccgtca
     9901 tggtgcatca gatgctccgc ttcgtctcaa cggcgaagac ctcaaactgg tttctgttca
     9961 tattaatgat gagccgtgga ccgcctggaa agaagaagag ggcgcactgg tcatcagtaa
    10021 tttgccggag cattttacgc ttaagatcgt taatgaaata agcccggcgg cgaataccgc
    10081 gctggaaggg ctttatcagt caggcgatgc gctttgcacc cagtgtgaag ccgaaggttt
    10141 ccgccatatt acgtattatc tcgaccgccc ggacgtgctg gcgcgtttta ccaccaaaat
    10201 tattgccgat aaaaccaaat atcccttcct gctttccaac ggtaaccgcg ttgcgcaagg
    10261 tgaactggaa aacggacgcc attgggtaca gtggcaggac ccgttcccga aaccgtgcta
    10321 cctgtttgcg ctggtggcag gcgactttga tgtactgcgc gacaccttta ccacgcgttc
    10381 tggtcgcgaa gtggcgctgg agctgtacgt cgatcgcggc aaccttgatc gcgcgccgtg
    10441 ggcgatgacc tcgctgaaaa actcaatgaa atgggatgaa gaacgcttcg gcctggagta
    10501 tgacctcgac atctatatga tcgtcgcggt ggatttcttc aatatgggcg caatggagaa
    10561 taagggtttg aatatcttta actccaaata tgtgctggcc cgcaccgaca ccgccactga
    10621 caaagattac ctcgatattg aacgcgttat cggccatgaa tatttccata actggaccgg
    10681 taaccgagtc acctgccgcg actggttcca gctcagcctg aaagaaggtt taaccgtctt
    10741 ccgcgatcag gaattcagct ctgaccttgg ttcccgtgca gttaaccgca tcaataatgt
    10801 gcgcaccatg cgcggattgc agtttgcgga agacgccagc ccgatggcgc acccgatccg
    10861 cccggacatg gtcattgaga tgaacaactt ctataccctg accgtttacg agaagggcgc
    10921 ggaagtgatc cgtatgatcc acaccctgct gggcgaagaa aacttccaga aagggatgca
    10981 actctatttc gagcgccatg atggcagcgc ggcaacctgc gacgactttg tgcaggcgat
    11041 ggaagatgcg tcgaatgtcg atctctccca tttccgccgt tggtacagcc agtccggcac
    11101 gccgattgtg accgtcaaag acgactacaa tccggaaacc gagcagtaca ccctgaccat
    11161 cagccagcgc acgccagcca cgccggatca ggcagaaaaa cagccgctgc atattccgtt
    11221 tgccatcgaa ttgtatgaca acgaaggcaa agtgatctcg ttgcagaaag gcggtcatcc
    11281 ggtgaattcc gtgctgaacg tcacccaggc ggaacagacc tttgtttttg ataatgtcta
    11341 cttccagccg gtgcctgcgc tgctgtgcga attctctgcg ccagtgaaac tggaatataa
    11401 gtggagcgat cagcaactga ccttcctgat gcgtcatgcg cgtaatgatt tctcccgctg
    11461 ggatgcggca caaagcctgc tggcaaccta catcaagctg aacgtcgccc gacatcagca
    11521 agggcagccg ctgtctctgc cggtacatgt ggctgacgct ttccgcgcag tgctgctcga
    11581 tgagaagatt gatccggcgc tggcggcaga aatcctgacg ctgccttctg tcaatgaaat
    11641 ggctgaactg ttcgatatca tcgacccgat tgctattgcc gaagtacgcg aagcactcac
    11701 tcgtactctg gcgactgaac tggcggatga gctgctggct atttacaacg cgaattacca
    11761 gagcgagtac cgtgttgagc atgaagatat tgcgaaacgc actctgcgta atgcctgcct
    11821 gcgcttcctt gcttttggtg aaacgcatct ggctgacgtg ctggtgagca agcagttcca
    11881 cgaagcgaac aatatgaccg atgcgctggc ggcgctttct gcggcggttg ccgcacagct
    11941 gccatgccgt gatgcgctga tgcaggaata cgacgataag tggcatcagg acggtctggt
    12001 gatggataaa tggtttatcc tgcaagccac cagcccggcg gcgaatgtgc tggagacggt
    12061 gcgcggtctg ttgcagcatc gctcatttac catgagcaac ccgaaccgta ttcgttcgtt
    12121 gattggcgcg tttgcgggca gcaatccggc agcgttccat gccgaagatg ggagcggtta
    12181 ccagttcctg gtggaaatgc ttaccgacct caacagccgt aacccgcagg tggcttcacg
    12241 tctgattgaa ccgctgattc gcctgaaacg ttatgatgcc aaacgtcagg agaaaatgcg
    12301 cgcggcgctg gaacagttga aagggctgga aaatctctct ggcgatctgt acgagaagat
    12361 caccaaagca ctggcttgat aaataaccga atggcggcaa tagcgccgcc attcggggaa
    12421 tttacccctg ttttctcagg cgaatttcag attcaccacg ctgcatcacc ctttgcaaca
    12481 cttccgattc cagctccgct aatcgcaccg accctaatcg acgcggaggg gggatatcca
    12541 ctgtcaaatc cagaccaatt tttccctctt caattaataa cacccggtca gccattgcta
    12601 ccgcttcgct cacatcatgc gtcaccaaca gtacggtaaa gccgtgctcc tgccaaagtg
    12661 acacaatcaa atcctgcatc tcgagtcgcg ttaaggcgtc cagtgccccg agcggttcat
    12721 caagcaacaa taaacccggt cgatgaatca acgctcttgc cagcaccact cgctgtttct
    12781 gcccgcctga aagtgcggca ggccattccc cggcgcgatt ctccagtcct accgcagcca
    12841 acgcccgacg cgcggcatcg cgccactggc ctttaaggcc taacccaacg ttatcaatca
    12901 ccgatttcca cggtagcaga cgcgcatcct gaaacatcat tcgcgtgtct tcctgaattt
    12961 cagccagcgg tgtggtgcct gccaacacat cgcctgcggt tggcgtttcc agcccggcca
    13021 gcaggcgcag cagggtactt ttgccaccac cgccacaaac tgacctgtcg gaatatgtaa
    13081 atccagttgg ttcaggacga tattttccgc gtaatgtttg cttactgcat tgagcaacaa
    13141 tggtgtgccc tggttcagac gagcagtatt cataccgtgg cctccttcaa atgataagcc
    13201 gggttccagc gcaaccagag gcgctctaac agctgcgcgc tgacgtcagc aagtttgccg
    13261 agcagggcgt aaagaataat agcgactacc accacgtccg tttgcaaaaa ctctcgcgca
    13321 ttcatcgcca gataaccaat gccggaattg gcagaaatgg tttcggcaac aatcagcgtc
    13381 agccacatca ggcccaacgc aaaacgcacg ccgaccataa ttgagggcag ggcaccaggc
    13441 aggatcacat ggataaacag cggtatgccg gataacccat agctacgcgc catctccacc
    13501 agcccgcgat cgatattacg gatgccatgc caggtgttga tataaatggg aaacagcgta
    13561 ccgagcgcca ccagaaagat ttttgcggat tcatcaatgc caaaccacaa aatcaccagc
    13621 gggatcagcg ccagatgcgg cacgttgcgc aacatctgaa ttgaggtatc cagcagccgt
    13681 tctccccagc gagatagccc gctaatcagt cccaaaatca accccagcga tccgccaatt
    13741 gaaaagccaa tcagcgcccg ctaggaactg atcgccagat gctgccacag ttcgccgctg
    13801 gcggagagcg tccagaacgc cgtcaccacc ccttccggtg agggcaaaat acgcgtcgac
    13861 agccagccaa ctgaggaggc cagttgccac accgccacga tgcccaccgg taaaaactag
    13921 ggggcaacgc gcaataacca cttcttcact ggcgttgcca ttatttcttc cttagctttg
    13981 cgcgacttta cgggggataa aatcattcgc caccgcttcg ccttgcggat tcagcggctg
    14041 cggctgggga atttccggaa tggcgacatc cagatgtggg aacagcaact cgccgacccg
    14101 atacgcttct tccagatgcg gatagcccga aagcacaaag ctgtcgatgc caagcgcggc
    14161 gtattcgttg attcgcgcag cgaccgtagg accatcgccc accagcgccg ttccggcacc
    14221 gccgcgcact aagccaacgc ccgcccataa attggggctg atctccagat tgtcgcgctt
    14281 gccgttatgt aacgccgcca ttcgctgttg tcctacggaa tccgtccggg cgaatgcggc
    14341 ctgtgctttg gcgatagttt catcatcaag atgcgagatt aaccgctcgg cggcctgcca
    14401 cgcttcgtcg ttagtttcac gaacaatcac atgcagacga ataccgaaac gaattttgcg
    14461 tccatgcgcg gcagctttcg cccgcacttg ttcgatcttc tcttttacta gttctggcgg
    14521 ttcgccccag gtgaggtaga gatcaacttg ttctgccgcc agctcctggg cgacgtctga
    14581 cgatccgcca aagtaaagcg gaggataagg ctgttgaatc ggcgggaaga gcagttttgc
    14641 tccgcgcaca tgaatatgtt taccgttgaa attgacggtt tcccccagca ataagcgccg
    14701 ccagacctag gtaaattccg ccgaggcttc gtagcgctcg ctatgatcaa ggaacacgcc
    14761 gtcgcctgcc agctcttgtg gatcgctgcc tgtgaccaga ttaaacaacg cacgaccatt
    14821 tgagagacgg tcaagcgtgg cggcctggcg agcggcaacg gtaggtgagg ttacgctggg
    14881 gcgcagggcg acaagaaact tcagccgctg cgtcaccggg atcatcgacg ccgccaccag
    14941 ccacgcatct tcacacgatc gccccgttgg gatcagcaca ccggtatagc ccagacgatc
    15001 cgccgcttgc gcaatttgtt gcagataacc gtgatcaacc gggcgtgaac cttcttccgt
    15061 tcccagatag tgcccgtcac cgtgggtcgg taaaaaccag aacatattca gactcataat
    15121 tgttttcctt ccagttgagt gggctgccag atgcgctggc gaatatcgac ttttttcggc
    15181 accagacgat tttcataaaa cagatctgcc gtttgctgct gtaaggcggc aacctcggcg
    15241 ttaaccggtt tgatggtggt aggagggcga tgatctaagt aagaggcaat caccggtgcc
    15301 ggtaagccca tcgtttttgc cagtaaagcg atgctttgct cgcgctggct gcgggttaac
    15361 gcatcggcct cactaaaggt tgccagtacg ccctgaataa aagcgccgtt tttttctgca
    15421 tagggacgag ctgccagata aaacgatcca gtttgattga gatcggtgcc gtctttcagc
    15481 acccgcatgc cgccctgtaa taatgcagca gagtagtagg gatcccagat agcccaggcg
    15541 tcaacgttac cttgctggaa cgcggcgcgg gcatcagcgg gcgtcaggta agtgggttgg
    15601 atatcggtaa acttaagtcc ggcctgacgc agtgcacgca gtaaaaggtt gtgtgaactg
    15661 gaacctttct gaaaggcaac tttgtgacct ttaagatcgg ctacggtttt gatcgggctg
    15721 ttttctgcca ccagaatcac ttcggctttg ggcttcggtg gctcgacgcc cacatatacc
    15781 aaatcagccc cggcagcctg ggcaaagatt ggcggaatat ccccggtact gccgagatca
    15841 atactgccaa cgtttaaggc ttccaacatt tgcggacccg cggggaactc cacccaggag
    15901 atttttgatt gcggatagcg tttttccagt aactggtggc tttttgccag taccatacca
    15961 atactgcctt tctgatagcc tatacataac gcttcaggcg aggattctgc agcaaccgca
    16021 atcgtagaga cgctaagcaa tcccaccagc gccagtttaa tgatgttacg catgggcatt
    16081 acctcgcaga gacagaaggt caggaacctg aacatcgcgg cggtgcaatg cctgccagaa
    16141 agtttctagc gcggtatcaa gacgggtttg cagatttggc gtgaactggg gtctgtgatg
    16201 gtaatcaatt acttgtgagt catcggcaaa cacgccgtgc aggatctcct gagctttcag
    16261 tgcgcttaaa actggtttaa gggcataatc gaccgccagc agatgggcca cggtaccgcc
    16321 cgtcgccagc ggtagcacca ctttgccttg caaagcgcgc tctggcagca ggtcgagcag
    16381 ggttttcagc gcgccggaat aggcggcttt atacacaggt gtagcgacta tcagtccatc
    16441 agcctgttgc agctgttcgg tgaaggtctt gagtgccgga ctatcgaaac gagcataaag
    16501 cagatcttcc gggacgaagt tttgcagatt ccagtgataa acctctacat ccaggccatt
    16561 tagtttttcc cgcgcatatt ccagcaagga gctggagcga gaaggaaagc gaggactacc
    16621 cgccagggtg atgacacgca tactctctcc ttataaccaa ttgttctttt tttgttaaca
    16681 ttgataacaa ttcggtcagt ctgtcggaga gacaagaaaa tgccaaatat aaattttgtg
    16741 tatctttttc tgaaaataaa ctaaagaaag ggctttatat atcacgcata tttatttgtt
    16801 ggatagtcat tagatgttga atcaatgaat tactcgttca gttaatattt aaatattcat
    16861 gaaatctata aattaaag
//
LOCUS       DAJVUY010000086        16749 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.086, whole genome shotgun sequence.
ACCESSION   DAJVUY010000086 DAJVUY010000000
VERSION     DAJVUY010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16749
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.086"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..2017
                     /gene="fhuE"
                     /locus_tag="OQQ72_002525"
     CDS             <1..2017
                     /gene="fhuE"
                     /locus_tag="OQQ72_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HCS2012210.1"
                     /translation="DYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVM
                     ENTLEISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV
                     VRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG
                     KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG
                     GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEVE
                     FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL
                     FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT
                     HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST
                     YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSGWMNSRLTTTLAIFRIEQDNVAQ
                     STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN
                     PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF
                     TRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(2077..3510)
                     /gene="ptsG"
                     /locus_tag="OQQ72_002526"
     CDS             complement(2077..3510)
                     /gene="ptsG"
                     /locus_tag="OQQ72_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HCS2012211.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMHDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(3805..4602)
                     /locus_tag="OQQ72_002527"
     CDS             complement(3805..4602)
                     /locus_tag="OQQ72_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS2012212.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(4613..5617)
                     /gene="holB"
                     /locus_tag="OQQ72_002528"
     CDS             complement(4613..5617)
                     /gene="holB"
                     /locus_tag="OQQ72_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCS2012213.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYTVTWLSREVTMSQDALLAALRLSAGSPSAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(5614..6255)
                     /locus_tag="OQQ72_002529"
     CDS             complement(5614..6255)
                     /locus_tag="OQQ72_002529"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HCS2012214.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(6245..7267)
                     /gene="yceG"
                     /locus_tag="OQQ72_002530"
     CDS             complement(6245..7267)
                     /gene="yceG"
                     /locus_tag="OQQ72_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HCS2012215.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(7270..8079)
                     /gene="pabC"
                     /locus_tag="OQQ72_002531"
     CDS             complement(7270..8079)
                     /gene="pabC"
                     /locus_tag="OQQ72_002531"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCS2012216.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSVTVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(8199..9440)
                     /gene="fabF"
                     /locus_tag="OQQ72_002532"
     CDS             complement(8199..9440)
                     /gene="fabF"
                     /locus_tag="OQQ72_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HCS2012217.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(9528..9764)
                     /gene="acpP"
                     /locus_tag="OQQ72_002533"
     CDS             complement(9528..9764)
                     /gene="acpP"
                     /locus_tag="OQQ72_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS2012218.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(9975..10709)
                     /gene="fabG"
                     /locus_tag="OQQ72_002534"
     CDS             complement(9975..10709)
                     /gene="fabG"
                     /locus_tag="OQQ72_002534"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HCS2012219.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(10722..11651)
                     /gene="fabD"
                     /locus_tag="OQQ72_002535"
     CDS             complement(10722..11651)
                     /gene="fabD"
                     /locus_tag="OQQ72_002535"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HCS2012220.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(11667..12620)
                     /gene="fabH"
                     /locus_tag="OQQ72_002536"
     CDS             complement(11667..12620)
                     /gene="fabH"
                     /locus_tag="OQQ72_002536"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HCS2012221.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVANQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(12688..13758)
                     /gene="plsX"
                     /locus_tag="OQQ72_002537"
     CDS             complement(12688..13758)
                     /gene="plsX"
                     /locus_tag="OQQ72_002537"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HCS2012222.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMALELVKEGRAQAC
                     VSAGNTGALMGLAKLLLRPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(13839..14012)
                     /gene="rpmF"
                     /locus_tag="OQQ72_002538"
     CDS             complement(13839..14012)
                     /gene="rpmF"
                     /locus_tag="OQQ72_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCS2012223.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(14064..14585)
                     /gene="yceD"
                     /locus_tag="OQQ72_002539"
     CDS             complement(14064..14585)
                     /gene="yceD"
                     /locus_tag="OQQ72_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HCS2012224.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            14784..15368
                     /gene="yceF"
                     /locus_tag="OQQ72_002540"
     CDS             14784..15368
                     /gene="yceF"
                     /locus_tag="OQQ72_002540"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HCS2012225.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGHLQTEVEPFDVHFRHLCEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(15480..16439)
                     /gene="rluC"
                     /locus_tag="OQQ72_002541"
     CDS             complement(15480..16439)
                     /gene="rluC"
                     /locus_tag="OQQ72_002541"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HCS2012226.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         4161 a         4546 c         4045 g         3997 t
ORIGIN      
        1 tgattacagc gtaacgtcta cctctgcggg taccaaaatg cagatgactc aacgtgatat
       61 tcctcagtcg gtcactattg ttagccagca gcggatggaa gatcagcagt tacaaacgct
      121 gggcgaagtg atggaaaaca cgctggagat cagcaaaagt caggcggatt ccgatcgtgc
      181 tctttattat tcccgcggat tccagatcga taactatatg gttgatggta tccccaccta
      241 ttttgaatcg cgctggaatc tgggcgatgc actttctgat atggcactgt ttgaacgcgt
      301 agaagtagtg cgtggcgcga caggactcat gaccgggacg ggtaatccat ctgcggcaat
      361 tgatatggtt cgaaaacacg cgaccagtcg tgaatttaaa ggcgatgtct cggcggaata
      421 cggtagctgg aacaaagaac ggtatgtggc ggatttacaa agcccactca ccgaagacgg
      481 taaaatccgc gcgcgaattg tcggcggcta ccagaataac gactcatggc tggaccgcta
      541 caacagtgaa aagaccttct tctccggcat tgtcgatgct gatttaggcg atcttacgac
      601 gctttcagcc ggttacgaat atcagcgcat tgatgttaat agccctacct ggggcggttt
      661 accgcgctgg aatactgatg gcagcagcaa cagttacgat cgtgcacgca gtaccgcacc
      721 tgactgggcg tacaacgata aagagatcaa caaggtcttt atgaccctga agcagcggtt
      781 tgctgatacc tggcaagcga cactgaatgc cacccactct gaagtcgaat ttgacagcaa
      841 aatgatgtat gtcgatgcct atgtaaacaa agcggatggt atgctggttg ggccatacag
      901 taattatgga cctggctttg attatgtcgg cggcaccggt tggaacagtg gcaaacgtaa
      961 agttgatgcg ctggatttgt tcgctgacgg tagttatgaa ttgtttggtc gtcagcacaa
     1021 tctaatgttt ggtggcagtt acagcaaaca aaacaatcgt tacttcagtt catgggccaa
     1081 catcttcccg gatgaaattg gcagtttcta caactttaat ggcaatttcc cacaaaccga
     1141 ctggtcacca cagagcctgg cacaggacga taccacacat atgaaatcgt tatatgctgc
     1201 cactcgagtc acccttgccg atccgctgca tctgatcctc ggcgcacgtt ataccaactg
     1261 gcgggttgat acgctgactt acagcatgga gaaaaaccac accacgcctt acgctggtct
     1321 ggtgtttgac atcaatgaca actggtcgac ctacgccagc tatacctcta ttttccagcc
     1381 gcaaaatgat cgtgacagtt caggcaaata tctggctcca atcaccggta acaactacga
     1441 gctgggtctg aaatcgggct ggatgaatag ccgtctgacc accacgttag ccatcttccg
     1501 tattgagcag gataatgtcg ctcagtccac cggtacacct atccccggca gcaacggcga
     1561 aaccgcctat aaagcggtgg atgggacagt cagtaaaggg gtggaatttg aactcaacgg
     1621 cgcaattacc gacaactggc agctgacatt tggcgcaacg cgctatattg cagaggataa
     1681 cgaaggaaac gccgttaatc ctaatctgcc acgcaccacg gttaaaatgt tcaccagcta
     1741 tcggttgcct gtcatgccag agttgacagt cggcggtggt gtgaactggc aaaatcgcgt
     1801 gtataccgac accgtgacac cgtatggcac cttccgcgcc gagcaaggta gctacgcgct
     1861 ggtggatctc ttcacccgct accaggtgac gaaaaacttc tcgttacagg ggaacgtcaa
     1921 taacctgttc gacaaaacct acgataccaa catggaaggt tctatcgtct acggcgcacc
     1981 gcgtaatttc agcattaccg gcacgtatca attctgaata acacctgtaa aaaaggcagc
     2041 catctggctg ccttagtctc cccaacgtct tacggattag tggttacgga tgtactcatc
     2101 catctcggtt ttcaggttat cggatttagt accgaaaatc gcctgaacac cagaacccgc
     2161 aaccactacg cccgctgcgc ccagtttctt caggccagcc tgatccactt tagacacatc
     2221 agcaacgctg acgcgcagac gggtaataca tgcgtcgagg ttagtaatgt tttctttacc
     2281 accaaatgca gcaaccagag ccggtgccat ttcgctggta cctgttgctt ttgcatcttc
     2341 agtcgcgtct tcacgacccg gcgttttcag atccagtgct ttaatcagca cgcggaagat
     2401 ggtgtagtaa acaatcgcat aaccgatacc gacgatcggg aacagccaca gtttgctgct
     2461 gttaccagac agaacgataa agtcgatcag accgtgcgag aacgacgtac cgtcatgcat
     2521 ccccagaaga atacagattg ggaatgccag gcctgccaga atcgcgtgga tgatgtacag
     2581 gatcggcgca acgaacatga aggagaactc gatcggctcg gtgataccgg tcaggaacga
     2641 ggtcagcgcc gcggagatca taataccgcc cactttcgcg cggttttctg gtttagcaga
     2701 gtgccagata gcaattgcgg cagctggcag accgtacatt ttgaacagga agccaccaga
     2761 cagtttaccc gcagtcgggt cacccgccat ataacgcgga atgtcgccgt ggaaaacctg
     2821 acctgctgcg ttggtgtatt caccaatctg catctggaaa ggtacgttcc agatgtggtg
     2881 cagaccaaac ggtaccaggc aacgttcgat gaaaccgtaa atgccaaacg caactaccgg
     2941 gttctggtaa gcagcccact gagagaaggt ctggattgca gaaccaatcg gcggccaaat
     3001 gaaggacagc acaacgccag taaagatggc agccaggcca gaaatgatcg gcacaaagcg
     3061 tttaccggca aagaagccaa gatactcagg cagcttaata cggtagaaac ggttaaacat
     3121 gtacgctgcg atcgcaccgg agataatccc tccgagtacg ccagtatccg ccaggtgttt
     3181 agaggcgatt tcttcagcag gtaaatgcag taccagtggc gcaaccacgg ccatggtttt
     3241 aaccatgatg ccataggcaa caactgcggc cagcgcggat acgccatcgt tattggtaaa
     3301 gccgagggcg acaccgatcg caaaaatcag tggcatgttt gcaaagacgg aaccgcctgc
     3361 ttctgccata acatgcgata caacggcggg cagccagctg aaattcgcgg aaccgacgcc
     3421 cagcagaata cctgcgatag gtagtacgga taccggcagc atcagcgatt taccgacctt
     3481 ttgcaggtta gcaaatgcat tcttaaacat aattgagagt gctcctgagt atgggtgctt
     3541 tttttacgtt ctcacgcgtg gcaagggggg agagcctcgc cgtgtacagg gcatctaagc
     3601 gccctttatt tattacacag agtaaaataa ttcagtgcca atttgtttga cggctatcac
     3661 gtttcaactt cagatcattg gagaagttgc acattttgac aaaacatatg tcacaatatt
     3721 tcaaacgcgg ttattcaccg cccaattttc ggcggtgaac tttactcgtt ttagccatta
     3781 attacgagct ttaaaaaaac tcattcaacg gatggattga aggcgggaag cgtcgatgtg
     3841 aaacagacgg gcgaagttat cggtggttac ctgcgccagt tcttcaacgg caacaccttt
     3901 caacacagcc atgtattctg caacgtcacg aaccatcgca ggttgattct cttttcctcg
     3961 atgcggtacc ggcgcaaggt aaggtgagtc agtttccacc agtaatcgat ccagggggac
     4021 ataacgcgca gcatcgcgca gttgctccgc attacggaag gtcacaatgc cggaaaagga
     4081 gatgtaaaat ccgagatcca gtaatttacc cgccgtttct ctgtcctctg taaaacagtg
     4141 tagtacgcca ccgcaatccg tcactttttc ttcgcgcaga attgccagcg tatcggcacg
     4201 ggcgtcacgg gtatggacga taaccggctt gttcagttca cgaccaatct ggatatgatg
     4261 gatgaaggac tcttgctgac gtactttagt ttccggtgtg taataataat ccagcccggt
     4321 ttcacccagc gctacaacac cctcttctgc cgccagacgg cgtaaatctt ctacatcgta
     4381 gggatcattc tggttgagtg gatgcacgcc acaagaaaat acgacgttgt cacgttcgcc
     4441 taccagatcc cgcatatgta aataacccgg taatgttgtg gcgactgcca gacaaaattt
     4501 cacatcgcgt gcggcggctt tcgccagaac gtcatccacg tccttatgca aagattcata
     4561 atccagacca tcgagatggc agtgtgagtc gactaaaaac atgatgtctc tcttaaagat
     4621 gaggaaccgg tagcacaacg cccggttgca ggtaatgctc aatacgcagt aaaagatcgg
     4681 tgatgagaag ctcgcggttg atgcctgtga cagacattaa ctgttcacga atgtggcaaa
     4741 catcccccag tatagcctgc aggcgcgagg gagaaagatg gtttgccagt tcggcgacca
     4801 ggcccggcac atcaacattg gtcacctgtg cagcgccatg atggcgtttt agcgcatcca
     4861 tcagcaacgt tgccagccag tgtaaacgcg ccggagcttg ttcatgatta agggccgcca
     4921 gcagcgaata ccagtcgccc gatggtacgc tatatgccaa cgcctgacac aatgtttcac
     4981 gagcctgcca gttatctccc tgaaacaacg ccagtgccgc gctaggcgaa ccggcactta
     5041 agcgcaatgc ggcaagtaat gcatcctgtg acattgtcac ttcgcgtgaa agccaggtca
     5101 cggtgtactg ttccggcggc ggcgcaaggt aatgtaaccg acaacgacta cgtaatgttg
     5161 ccagtaaacg ttcaggctcg cgggtagcca ggaaaaacca ggtttctgct ggtggctctt
     5221 caagcgtttt cagcaatgcg ttagccgcgg cgtcggtcag taaggcagca tcggttaccc
     5281 agacaacttt cgcaccacct aggcgtgcgt gctcattcag cttttcggtg acctcacgta
     5341 ccgcatcaat gcccagcgta tttttccctt tttcgggagc cagggtgtag taatcgggat
     5401 gcgtgccagc ctgcatcaac tgacatccac gacagtgacc gcaacttttg tggccctgcg
     5461 gttgttggca gagtaaataa cggctcaggg cgtagattaa agcatcatcg cccatgcccg
     5521 gtaacgcctg aatgagtagc gcatggtgac ctcttccggc ctgatagctg gctaccagtt
     5581 tttcgaaatc aggtcgtaac catggatacc atctcatgcg tccaactcct tcacccagtg
     5641 ggtcacggta gtacggattg catccatcac ggcctccagc ggctgggtgg catcaatggt
     5701 atgaatactt ttatcttgtg cagccagttc cagatagcgg gcgcgggtgc gattaaagaa
     5761 atcgaaagac tcttgctcaa tacgatccag ctcgccgcgc gcacgcgcgc gttttaagcc
     5821 aacttccggg gtaacatcga gatagagcgt taagtcaggg cgaaaatccc cgagaacagc
     5881 atcacgcagt gttgccagca tatgttggtc aataccacgt cctccgccct gatacgcctg
     5941 agtggagaga tcgtggcgat cgccaatcac ccaggtgccg ttagccagag ctggtttgat
     6001 gaccgtttct accagttgaa cgcgcgcggc ataaaacatc agaacttcgg ctttatcggt
     6061 aatgacttca tcgcctaccg atttgatatc cagcaccagg cttcttaact tttcggcaag
     6121 ttgcgtaccg ccaggttccc gagtgaaaac catgtcgcgg atacccagtt gctcaagcgt
     6181 ctcaaccacc acattacgcg cggtagtttt gcctgcgcct tccagcccct caatgacgat
     6241 atacttactg cgcatttttt tccttaagca ctttcagata atcctgcaca gacttgttat
     6301 ggctggcaag attggtatta aacgtgtgac cacctttacc atcggccaca aaatagagat
     6361 acggcgtttt tgccggatgc gcagcagcct tcagcgaatc cgcccccggc gtagctatcg
     6421 cacctggcgg caaaccggta atggtatagg tgttatacgc tgtcggcgtt tccaggtctg
     6481 cacgagaaag tttgccatta taacgctctc ccatcccgta aatcacggtt gggtcggtct
     6541 gcaggcgcat accaatgcgt aaacggttga taaataccga ggcaacctga tcgcgttcac
     6601 tggcaacggc ggtttctttt tcgataattg atgccatcgt caccagctgg tttttatctt
     6661 tataaggcag accgtccgca cgcccttccc aggcgctatc gaccgctttc accattttct
     6721 tgtgcgctcg cttgagtaac gcgacatcgg tggtattggc ggtatacatc caggtgtctg
     6781 gccagaacca accttcaatc cactccgggt tttccagttc aagtgcctgc gctacggtgg
     6841 cgtacttatc gtcactcagc gtgtgcttga tatacggagc ctcacgcaat tgcttgaggt
     6901 agtcgctcag acgcatccct tctaccagtc gcagcgggaa ctgtgcttct ttaccgcttt
     6961 ccagcaattt cagcatctcg cgcacggtca tctgcggtgt aaagcggtaa gtcccggctt
     7021 taaagtgaga aagatccggt tcgatacgca gcaaccattg aaaaacccgt gggcgattga
     7081 tgatcttatc ggcataaagc tgttcaccaa gcgccagacg tccggtccct ggcttcaggg
     7141 taaatatcgt ctcttctttg ataagcaatt tgctgtcggc aagatggcga accttccaga
     7201 cgcccacacc agcggcgata cccagtacca ccagcaataa caagataatc aataacactt
     7261 ttttcatgac taattcgggc gctcacaaag tggggctaaa tattcatata acgttgctga
     7321 cgaaaaggag acatcgccac aggcacgtac gggcatcact ggcattaacg cattacaaat
     7381 aaccatctca tctgcctgca acgcctcttc cagagaggct tgcacttcga caagctgata
     7441 agaggattgt gccagcaaac ggatacagaa ttgtcgcata atgccgttaa cacctgcctg
     7501 atccagtcgc ggcgtataaa ctacattgcc cttccgccag aacaaattag ccgcacagca
     7561 ttccgtaacc cacccttcgc tgtcaaggac cagcgcctca tcagcgtttg tctgctcaag
     7621 atgagagcgg atcaatactt gctcaagccg attaagatgt ttaatacctg caagatgggg
     7681 attgcgcccc agccgcaccg ggcttagcgc caacgtcatc ccttcgttac gcaaacggtc
     7741 gtaatgtgca ggataaaccg taacggagag aatccgcgtt gccggtccac tgttcaatgt
     7801 gctgtaccct cgcccgccac taccgcgact gatcacgact ttcagcacac cattttgctg
     7861 ttctgctgcc agcgttttca tctcttgttc aagctgaggc cagaagtcac agaaaatcat
     7921 caaccgctga caagcatcct gtagtcgctg gatatgcgcc gataacaaac tgactttacc
     7981 gtcgataact ctggcggtgg taaaacaacc atcaccaaac tgcgttgccc gatcgcttac
     8041 tgccagcgat tcctgcttat gaccgttaat taagaacata ccggctcctt atcagagaat
     8101 tgttagtgtg gcagcatgct cactacggaa caagtcggaa taaaagctaa gaaaaaaggc
     8161 ccgcaagcgg accttttata tgggtgggaa atgacaactt agatcttttt aaagatcaaa
     8221 gaaccattag tgccaccgaa gccgaaggag ttacacagcg tgtattccat tccgctgacc
     8281 tgacgtgctt catgcggtac gaaatccaga tcgcaacctt catccaggtt atccaggttg
     8341 atggttggcg gaacagcctg atcgcgcagc gccaggatgg agtagataga ctctactgcc
     8401 cccgccgcac ctaacaggtg accggtcata gatttcgtgg agcttaccaa cacacggctt
     8461 gcagcttcac cgaagatggc tttcaccgcc tgcgcttcag ctttatcgcc agccggcgta
     8521 gaagtaccgt gcgcgttaac gtagccaatc tgactcgctt caatgcctgc atcacgcaga
     8581 gcatttgcca ttgccagagc tgcgcctgcg ccattttctg gcggtgacgt catatgataa
     8641 gcatcgctgc tcataccaaa gccgacgagt tcagcgtaaa ttttcgcacc gcgttttttc
     8701 gcgtgttcgt actcttctag taccagcata ccggcaccat cgcccagtac gaagccatca
     8761 cgctctttat cccacgggcg gctcgccgct tgcgggttat cattgcgggt agataatgca
     8821 cgtgccgcgc caaaaccacc aacgcccagc ggcgtactgg ctttctctgc gccacctgca
     8881 accatcacgt cagcatcgcc atacgcgata atacgcgcag catgaccaat gttgtgcacg
     8941 ccggaagtac aggcggtcgc gatagagatg cttgggccac gcaggccata catgatagtc
     9001 agatgacctg ccaccatgtt cacaatcgtt gacggaacga agaatgggct gatcttacgt
     9061 ggaccaccgt tcatcagaga tgtgtggttt tcttcgatca gtccgaggcc gccaatcccg
     9121 gagccaattg cggcaccaat gcgggttgcg ttctcttccg ttatttcaag gccagaatcc
     9181 tgcatggcct gaacgccagc gacaattcca tattgaatga aggcatccat cttgcgctgt
     9241 tctttgcgcg agataatgtc ctcacagtta aaatccttta ctaagccagc aaatttcgtt
     9301 gcataggcgc tagtatcgaa atggtcgatt aggctgatgc cactctgacc ggcaagcaga
     9361 gctttccagg tagactctac ggtattgccg acaggagaca acatgcccag tccggtcaca
     9421 actacacgac gcttagacac gtttgtcctc cagggaggga aaaaatgatt ctagtgggac
     9481 aaaaagataa aactcaggcg gtcgaacgac cgcctggaga tgttcactta cgcctggtgg
     9541 ccgttgatgt aatcaatggc agcctgaacg gtggtgattt tctcagcttc ttcgtccgga
     9601 atctcagtat caaactcttc ttccagagcc attaccagct caacggtgtc aagagaatcc
     9661 gcgcccaggt cttcaacgaa agaagcattg ttggtaactt cttcctgctt aacgcccagc
     9721 tgttcgccga taattttctt aacgcgttct tcgatagtgc tcatactctt aaatttccta
     9781 tcaaaactcg ctttcgcgat ggttttcgta gtgtataaaa tgttgaaaaa tttgcaacta
     9841 aatcccggca ggtcttacca cgattttacg ttattttgag gccttacccc ccaataacgc
     9901 aaatcatttt gcactaatta ttactcataa ccacgcagac tgcgcgcaac atgagcattt
     9961 tgtgcaaatc gcggtcagac catgtacatc ccgccgttca catgcaaagt ttcacccgtg
    10021 atgtaagctg cttcgtcgga tgccaggaat gcaaccgcgt tggcgatttc ctgtgcgccg
    10081 ccgaggcgac ccgcaggaac ctgcgccagg atacccgcac gctggtcatc gctcagcgca
    10141 cgtgtcatgt ccgtttcaat aaagcccgga gcaacaacgt ttacagtaat accgcgtgac
    10201 gcaacttcgc gcgccagtga tttactgaag ccgatcaagc ccgctttcgc cgcagcgtag
    10261 ttggcctgac cgccatttcc catggtacca accacagaac cgatagtgat aatacgacca
    10321 tgacgctttt tcatcatagc gcgcattacc gcttttgaca gacggaaaac agatgaaagg
    10381 ttggtttcga taatatcgtt ccactcttca tctttcattc gcattaacag gttatcacga
    10441 gtgataccgg cattattgac caggatatcc acttcaccaa attctgcgcg aattttttcc
    10501 agaacagatt cgatagatgc cgggtcggtc acattcaaca tcagaccttt gccgttagca
    10561 cctaaataat cactgatcgc ctgagcgcca ttttcactgg tcgcagtgcc aataactttc
    10621 gcgccacggg ctgcgagcgt ttcagcaatt gcgcggccaa ttccgcggct tgcaccggtt
    10681 accagtgcga tttttccttc aaaattcatg attttcctct tttaaagctc gagcgccgct
    10741 gccatcgctg aaggttcgtt cagcgccgag gcggtcaggg tgtcgacaat gcgtttcgtc
    10801 aggccagtta gcactttgcc cgggccgact tcatagagat gttctacgcc ttgcgctgcc
    10861 atgtactcaa cagacttcgt ccactgaacc gggttataca actgacgtac cagtgcgtca
    10921 cgaatggcat caccattggt ttcgcatttc acatcaacgt tattcacaac aggaactgtt
    10981 ggtgcgttaa aggtgatttt cgctaattct actgccagtt tgtcggctgc tggtttcatc
    11041 agcgcacagt gagacggtac gctcactggt aacggcagcg cgcgttttgc gcccgcagct
    11101 ttacaggcag cgccagcacg ctcaaccgcc tctttatgac cggcaataac cacctgtccc
    11161 ggagagttaa agtttaccgg agaaacgacc tgaccttctg cagcttcttc acacgctttc
    11221 gcaatagacg catcatccag accgatgatt gccgccatag cgcccgtgcc ttctggtacg
    11281 gcttcttgca tgaacttgcc gcgcatctca accagacgca ccgcatcagc gaaatcaatc
    11341 acgccagcgc aaaccaacgc ggagtattcc cccaggctgt gaccggccat cattgccggt
    11401 gctttaccgc cctgctgctg ccatacgcga tacagcgcaa cagatgcagt caacagcgct
    11461 ggctgggttt gccaggtttt attcagttct tcagctggcc cctgctgggt cagcgcccac
    11521 aggtcgtagc ccagcgccgc agaagcttca gcaaacgttt cttcgacaat tggatagctc
    11581 gccgccatat cagccagcat tccaacggtt tgagaaccct gtccagggaa cacaaatgca
    11641 aattgcgtca tgttttaatc cttatcctag aaacgaacca gcgcggagcc ccaggtgaat
    11701 ccaccgccaa aggcttcaag cagaaccaac tgccccggct taatgcgccc gtcgcgtaca
    11761 gcttcatcca gcgcgcacgg gacagaggcc gcagaggtat taccgtggcg atccaacgtc
    11821 accacgacat tgtccataga cataccgagt tttttcgccg ttgcactgat aatacgcagg
    11881 ttagcctgat gcggaaccag ccagtccagt tgagaacggt caagattatt cgccgccagc
    11941 gtctcatcaa cgatgtgcgc cagttccgtt accgcaacct tgaagacttc gttgcccgcc
    12001 atcgtcagat gaattgaatt ctctggattc acgcggtcgg cgtttggcag cgtcagcaat
    12061 tcaccataac taccgtcggc atgcagatgg gtggagatga ttcccggctc ttcagaagca
    12121 gccagcaccg cagcgcccgc gccatcgcca aaaataataa tagtcccacg atctgttgga
    12181 tcgcaggtgc gcgccagtac atcggaaccg acgaccagag catacttcac cgccccagat
    12241 ttcacgtatt gattggctac gcttaatgca taggtgaaac ctgcgcaggc tgctgcaacg
    12301 tcaaatgccg ggcaaccttt aatgcccaac atgctttgaa tctgacaagc tgcgctcggg
    12361 aaagcgtgcg tagcagaagt cgttgccaca acgatcaggc caatctggtc tttctcaatg
    12421 cccgccatct caattgcgcg tgtcgccgct tcaaagccca tggttgaaac ggtttcgttt
    12481 ggcgcggcaa tgtggcgttc gcggataccg gtacgagtga caatccactc gtcagaggtg
    12541 tccaccattt tttccaaatc ggcgtttgtc cgcacttgtt cgggcagata gctgccagta
    12601 ccaataatct tcgtatacat gtacgctcag tcacttttcg gttatatacc gtcacttgca
    12661 aactgcgagt tcgctggcag cgtcctgcta ccgcagagtt ccgcttttgc caccgtccag
    12721 cagctcaaaa ccagctgggt atacagattc caggcgagcg gcaattcgct gaggaacttg
    12781 tcgctgcacc gcctgcactg cctgttcaat cgcgaccgca aaagctcgct gattggctgc
    12841 accatgactt tttatcaccg tgccgcgcaa tcctaacaga caggcgccgt tatactggtc
    12901 ggggttgagg tgactgaatc gcctcgtcag gctcttttgt agccaacgct ttaataacag
    12961 tagccaccac gaccgttttt tcccttcacc ctgagatttc agcagagaaa ggaacatcct
    13021 gacaacacct tccatcgtct ttaacgtgac atttcctgta aagccgtcac aaaccagcac
    13081 atctgtcttg ccagttaaca actcattggc ttcaagatag ccgatataat tgatagaagg
    13141 gattgtttta agcaccgctg aggcatcccg aatactgtcg agacccttta cttcttcttc
    13201 accaatattg agcaacgcca cgcgaggatt gggaatttcc accacctctt cagccagaac
    13261 tgagcccata atggcaaatt gcaccaacat tgtgctgtca caatcgacgt tggcccctaa
    13321 atcgaggacc accgttttgc ccttttgctg atgtggtaat accgtcacca gcgccggacg
    13381 ctcaatcccc tccaggggcc tgagtaataa ttttgccagc cccatcagtg ccccggtatt
    13441 accggcactg acacaggctt gcgctcgacc ttctttcacc agctccaggg ccatacgcat
    13501 tgaactccca cgactagcgc ggatagcttg cgaaggccgg gcatcactgg cgataactga
    13561 ctgcgcagga ataatctgca gacgcgaacg ttgttcaaag tcagctttag caagtaatgg
    13621 cgtgatggcg tcgggattgc cgactaaaag aagagtgagt tgcgaattag aattcagtgc
    13681 ctgcaatgct gcaggcactg tcacggaagg gccaaaatcc cctcccatga catctaacgc
    13741 cagggttaga cgtgtcaagg tatcgtcgcc gcccggtttg gtctttcccc agttgcctgg
    13801 ggaaaatcct cactaagctt catcacgcag acgcgtgatt acttagcgat gaccttgcgg
    13861 ccgcggtagt aaccgtcggc agtgatatgg tgacgcaggt gtttttcacc agaagttttg
    13921 tctacagaca ggctggtgac tgcggtcagc gcgtcatggg aacgacgcat gccacgtttg
    13981 gaacgggttg gtttattctg ttgtacggcc atggacctta ctcctcaatt acggtttatc
    14041 cccgatccaa cggggagcac caattactta cgctttaagc tggctaatac ggcaaatggg
    14101 tttggctttt gcacttcttc aggcagttca ccaaagacca tgtccgcttc ggacacttca
    14161 cagtgttcag aatcatgcac cggaactacc ggcaaggcga ggatgatttc atcttcaacc
    14221 attgcaagca gatcgatttc accgaattcg ttaacctcaa tcggttcata cgcttccggc
    14281 agtgcttcag cctgttcgtc tgaacgcaca ggactaaaac aatacgttgt gtagacctga
    14341 tgagtaaacg gcttcccgca acgctgacac tcgagcgtta ccgtcacctt cgcatcgccg
    14401 tttaacactg cgagacgttg gttatcgata gcgaacgaca tggagcattc cacatcactg
    14461 tccacactga ctacggattc ggcgacgcgc tcaacctgat caggggtata gataccctgg
    14521 taatcaaggc gtttttgagc cgtacgaacc ggatcgagag tcaggggtaa ttttaccttt
    14581 tgcatagggc gcgcatatta actttgtaac gtcatagagt caaagaaaaa ggcagcctgt
    14641 ggttgccttt tgccaataat tcgcacacat tgcgggttac tgctttattt tcgttcagtg
    14701 ctgataacga acatcaacct gcaaaacgaa gcgcatagtt taaaatggct atcatcaata
    14761 cgctatatct gatggaaaaa aatatgccta aacttatttt agcctccacc tcgccatggc
    14821 gtcgcgctct tctggaaaaa ctgcaaatct cttttgaatg tgcagcacca gaggtcgacg
    14881 aaaccccacg cagcgacgaa tcaccgcgac agttggtgct tcgactggca caagaaaaag
    14941 cgcaatctct ggcgtcacgt tatccggatc atttaattat tggttcagac caggtatgtg
    15001 ttcttgatgg cgaaatcacc ggtaaaccgt taacggaaga aaatgcccgt ctgcaattac
    15061 gcaaagccag cggcaatatc gtcaccttct atactggact ggcgttgttt aattcggcga
    15121 atgggcatct acaaacagaa gtggagcctt ttgacgtcca tttccgtcac ctgtgcgagg
    15181 cggagattga taattacgtg cgtaaggagc atcccctgca ctgcgcgggt agctttaaga
    15241 gtgaaggatt tggcattacg ctgtttgagc gtttagaggg acgtgaccct aacacgctgg
    15301 ttggtttacc gctaatcgcg ctgtgtcaga tgttacgtcg ggaagggaaa aacccgctga
    15361 tgggatagtt gtttgcgccg gatgcggtta cgtcgcatcc ggcaatcggt gcaggcggcc
    15421 tgatgcggcg taaacgcctt atcaggccaa ccgcccatta tcaggcttat atgcttgtat
    15481 tagcgcgcgt tacgcagctt ttgcaaacaa cgcttcaaac cttcatccat cggcgcttcg
    15541 atacgcatca cctcaccggt ccccggatgg gtaaacttca acgctgcggc gtgcaggaac
    15601 agacgattta atcccgtgcc tgcttcagtg agctgtctgt caaattcacg gtcaccgtag
    15661 cgatcgtcaa aggcaatcgg atgacccgca tactgtgtat gcacacggat ctgatgagta
    15721 cgtccggtta ccgggctaca acgcaccagg gtggcaaatg catagcgttc ttccacttta
    15781 aagcgtgttt ccgacggttt gccttcctga ctgacacgca cgatacgttc gccgctttgc
    15841 agaatatttt tcaataacgg cgcttgaacg ctcttcacat gcgactgcca ctgactgcgc
    15901 accagcgcca ggtaatcttt ttgcattcct ttttcacgta attgctcatg cagagaacgc
    15961 aacgccgagc gttttttcgc taccagcaac acacctgaag tgtcccggtc gagacgatga
    16021 accagttcaa ggaaccgcgc ttccgggcgc aacgcccgca aaccttcgat aacgccgaag
    16081 cttaaaccac tgccgccatg taccgccgta ccggaaggtt tattcagcac caggatatga
    16141 tcatcttcat ataagatgac gtccgccagc gccgccacct tttgcagatg tggcgaaacc
    16201 gcctcttctt cccgctcagc aacgcgaacc ggtgggatac gcacctcatc acccgcttcg
    16261 agtttatatt caggcttaat acgttttttg ttcacccgca cttcgccttt acgcaaaata
    16321 cggtaaatca tactttttgg tacgcctttc aattgggtac gcaaaaagtt gtcgatacgt
    16381 tgccccgctt cgtcagcggt gatagcaaca atttttacgg atggagtctc tgttttcatg
    16441 gtgggcgatt ctaattagcc aacaggattc gcgccactca tttttctatg cttatattta
    16501 gttttacacc ttattacttc actacgtgat cactttattg atggttatta aaccaatcac
    16561 cagcaagaag tgaaaaatgt aatgaacgca tcccacacaa ttaaacacgg agcagtatga
    16621 tggttaaaag ggtgaaactg gcaggtgtgg agcctcgcag atttccggca tcatagtgcc
    16681 caatacggga tgcataaagc tccctcagac tggagactcc acaaatgaaa tatacaccgg
    16741 ttggcgttg
//
LOCUS       DAJVUY010000087        16609 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.087, whole genome shotgun sequence.
ACCESSION   DAJVUY010000087 DAJVUY010000000
VERSION     DAJVUY010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16609
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.087"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(28..2217)
                     /locus_tag="OQQ72_002542"
                     /pseudo
     CDS             complement(28..2217)
                     /locus_tag="OQQ72_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416896.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing phosphodiesterase"
     gene            complement(2426..2501)
                     /locus_tag="OQQ72_002543"
     tRNA            complement(2426..2501)
                     /locus_tag="OQQ72_002543"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2466..2468),aa:Ala,seq:ggc)
     gene            complement(2541..2616)
                     /locus_tag="OQQ72_002544"
     tRNA            complement(2541..2616)
                     /locus_tag="OQQ72_002544"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2581..2583),aa:Ala,seq:ggc)
     gene            2837..3196
                     /locus_tag="OQQ72_002545"
     CDS             2837..3196
                     /locus_tag="OQQ72_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS2012227.1"
                     /translation="MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKA
                     RLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLL
                     REGIIGLLQRLGIRDSK"
     gene            3198..3590
                     /locus_tag="OQQ72_002546"
     CDS             3198..3590
                     /locus_tag="OQQ72_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416898.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS2012228.1"
                     /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG
                     RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGVRAPAYRQIINAIDNMTD
                     IEQEKVAQFLSREGIRNFLARLDIDESA"
     gene            complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ72_002547"
     CDS             complement(3641..5056)
                     /gene="gltX"
                     /locus_tag="OQQ72_002547"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCS2012229.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            5316..5391
                     /locus_tag="OQQ72_002548"
     tRNA            5316..5391
                     /locus_tag="OQQ72_002548"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5349..5351,aa:Val,seq:tac)
     gene            5436..5511
                     /locus_tag="OQQ72_002549"
     tRNA            5436..5511
                     /locus_tag="OQQ72_002549"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5469..5471,aa:Val,seq:tac)
     gene            5558..5633
                     /locus_tag="OQQ72_002550"
     tRNA            5558..5633
                     /locus_tag="OQQ72_002550"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5591..5593,aa:Val,seq:tac)
     gene            5638..5713
                     /locus_tag="OQQ72_002551"
     tRNA            5638..5713
                     /locus_tag="OQQ72_002551"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5671..5673,aa:Lys,seq:ttt)
     gene            5833..6174
                     /locus_tag="OQQ72_002552"
     CDS             5833..6174
                     /locus_tag="OQQ72_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlxA-like family protein"
                     /protein_id="HCS2012230.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLDVSLLNP
                     VEKTTHIDIYI"
     gene            complement(6165..7091)
                     /locus_tag="OQQ72_002553"
     CDS             complement(6165..7091)
                     /locus_tag="OQQ72_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2012231.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            7181..8179
                     /locus_tag="OQQ72_002554"
     CDS             7181..8179
                     /locus_tag="OQQ72_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HCS2012232.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(8176..8394)
                     /locus_tag="OQQ72_002555"
     CDS             complement(8176..8394)
                     /locus_tag="OQQ72_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HCS2012233.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ72_002556"
     CDS             complement(8396..10411)
                     /gene="ligA"
                     /locus_tag="OQQ72_002556"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HCS2012234.1"
                     /translation="MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ72_002557"
     CDS             complement(10482..11468)
                     /gene="zipA"
                     /locus_tag="OQQ72_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HCS2012235.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QPVQQPPEAQVPPQHAPRPAQPVQQPVYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ72_002558"
     CDS             11698..12459
                     /gene="cysZ"
                     /locus_tag="OQQ72_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HCS2012236.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ72_002559"
     CDS             12644..13615
                     /gene="cysK"
                     /locus_tag="OQQ72_002559"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HCS2012237.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ72_002560"
     CDS             13999..14256
                     /gene="ptsH"
                     /locus_tag="OQQ72_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HCS2012238.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ72_002561"
     CDS             14301..16028
                     /gene="ptsI"
                     /locus_tag="OQQ72_002561"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HCS2012239.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            16069..16578
                     /gene="crr"
                     /locus_tag="OQQ72_002562"
     CDS             16069..16578
                     /gene="crr"
                     /locus_tag="OQQ72_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HCS2012240.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         4196 a         4276 c         4074 g         4063 t
ORIGIN      
        1 gataattccc cggttttttt acgcctgtta atcagctaat ggctgcgggc gaccaatcaa
       61 atacccttgc agatattgca ccccgagctt atgcaatagc gcctgctgct gttgcgtctc
      121 gacaaactcc gcgaccacac tcaatgactt cgctttcgcc agatcggtaa ttgatctcac
      181 aatcatcgca tccagcgtgt tcgtgacaat atctttcaca aagacgccat caattttgat
      241 gatatcagcc tgcaaacgct ttaaccgttc gtagttggca tagccggtgc caaagtcatc
      301 aatcgcaatc cggaaaccaa acttatgcag ctgctcgatg ttgtacatgc tgctttctgc
      361 gttagaaaac gcctgctcct cggtgatctc aagaatgacc gcctgcgggg agatgtgata
      421 acgcttaaac agacgaataa tccgcccggc aatattcttt tgcagcagcg tgagcggcat
      481 taaattgact gaaaagcgcg gtcctttttt gtcgcaaggg tgtgttgcca gccacttcaa
      541 caaggattcc agcacttgca aatcaaaacg cgcgctaagg ttaaactgag caataagggg
      601 cagaaactta tccggggtca taatgccgcc gtcatatttc agtcgcgcga ggatctcatc
      661 ataaccttca ccctctttgt tgcgaattgg ctgggcgtag agcagcaaat caccctgatc
      721 taacgccgtg cgaatggtat tcagcaatag cacctgttta gtggtctgcc cggaaaccat
      781 ctcctctctg ctatccagcg ccagcacatg atgatgtgcg caggattgct ccgccagcca
      841 gcttaactgc cccaacaagg gttgcagggt ttcctgattt ccatcaaaac gcccccaggc
      901 agcaccatag cccatatcca gcccggtatt gttccagtga atttgccgac tattcaggat
      961 gttaaccata tgctggagtc gcccttccgt ttccggcccg ctcagcacta acagcagttc
     1021 actacccggc aattgataca acttttcgtt ttcctgcatc aacggcagca gcgtacggca
     1081 aattgagcgg atacagtgaa cgcgcatcat taagccgtaa tgacgactca taaactcaag
     1141 attatcaatg cgcaggcagc aaaaactctt gcccgcctct tgctccggcg cttgttccaa
     1201 cgcacggaag ttgggcagga gcgttaacgg atcggtcagc gcctgcaaat gccagcggcg
     1261 attaagccat tcactgcgat gataaatgcg caccatatag agcaggcaaa cgctaaagga
     1321 aatcagcacc gcaagaataa atgccagcga atattcggtt tccacccctt gcaaaaagtt
     1381 ctggttgtaa ttcagaaggc aaagcgttga aacagcccag gtgagattta aaaacggata
     1441 gcgaagctta ccgaccccga gggtaaagat gatgaagaaa acgggtacca ggtaaccggc
     1501 aataaagtcg ttttcataag gtgtgcacaa cagaagtaga agcacgctta acgctgccag
     1561 ccagcttaag gtaaatgcgc gtttctcttt gcccaacgac ggcgcgatat ccctgcgcca
     1621 caatatctgc gcaaagtggg gacttacaat catgcgagtg agatagtaga aaagcatgtt
     1681 gtaaatcagc acagcggtga aaaggcttag caaatcaacg accgtgaaaa tggcatccgc
     1741 atcgccgaaa aaggtggata tctttagcgg gaaatcaaag aagctcccca caagatacat
     1801 gctgcatttg atgccgatcg gcgtcaccaa accaagccag aacagacgtt gccagacata
     1861 tcggctggtc aatccataac gccaacgcgt ccccagctgc cagcgtaata ttgcgcaggc
     1921 acacaacacg acaaacgtct ggctaccgag catgaccgca gtctataaaa aagagagatg
     1981 aaagttccac agattggtgc aaaacatccc gcataaaacg ggaacgacac ctcgccagcc
     2041 aaagataaac aagattgaca gcattacgca cagtggcatc cacgccagaa agatataact
     2101 ggaatggata atggcaagtg gcgaaataaa acgggatagc tgaataagta ccacggtgag
     2161 cgtaaacgct agtgtgaata tcttgatatt ttttatcagg ttatgctcca caaacatgag
     2221 tacactactc tcactgatcg gagttttcag gcacacaaat aataagttta ttcgcatcgc
     2281 gaagcaaaca gggggccagc ctgttgccga tttttcatcc aatgatgctt tcaccaggcg
     2341 gcactaaccc ggacgtagac tgtattacaa aagcggcaaa aagcagagac aaaaaacccc
     2401 cgctttgcag cgagggttgg aaatttggtg gagctaagcg ggatcgaacc gctgacctct
     2461 tgcatgccat gcaagcgctc tcccagctga gctatagccc cacgatgcgt ttacgtacca
     2521 aatttgctgg gtgcaaaatt tggtggagct aagcgggatc gaaccgctga cctcttgcat
     2581 gccatgcaag cgctctccca gctgagctat agccccgtca cgtaaagctt gtcgagttga
     2641 cgggcggcat catatgaatt ccgcccgaat gtgtcaacgg caaattgcaa cgtgtagttt
     2701 caatcgctga aaaatcaggc aaatgaacaa ttttggaaaa ccgctcgcat tcagtagtta
     2761 ttcatgtcac ggtttcctgt aaagtggtgt tataaaatga actactaata gacccacata
     2821 cattcaggga attgttatgt tcaaggagag gatgacacca gatgaacttg ccagactgac
     2881 cggctatagc cgccagacca ttaataaatg ggtacgcaag gaaggctgga caacgtcacc
     2941 aaaacctggc gtccagggtg gcaaagcccg actggttcac gtcaatgaac aggttcgtga
     3001 atatattcgc aatgctgaac gtccagaagg tcagggagaa gcgcctgccc tttctggtga
     3061 tgcgccgctt gaagtattgc tggtgacact ggcgaaagag atgacgccag ttgaacaaaa
     3121 acagtttaca tccttgcttc tgcgggaagg gattatcgga ttgttacaac gcttagggat
     3181 tcgcgatagc aaataatatg aaaagattac gcaataaaat gaccaccgaa gaactggctg
     3241 aatgcctcgg tgtggctaaa caaactgtta accgttggat cagagaaaaa ggctggaaaa
     3301 cggaaaaatt tcccggcgtg aaaggcggtc gtgccagact tattctggtc gatacgcaag
     3361 tttgcgagtt tattcagaac acgccagcct tccataacac accaatgttg atggaagctg
     3421 aagagagaat tgctgaatac gctcctggag tacgcgcccc ggcgtatcga caaatcatca
     3481 acgcgataga taatatgaca gacattgagc aggaaaaagt cgcgcaattt ttgtcacgtg
     3541 aaggaattcg caatttcctc gcccgtctcg atattgacga atcagcataa ataaaaaacg
     3601 gcaggatatt atctcctgcc gtttatcttt tatgcgctaa ttactgctgg ttttcgcgtt
     3661 cagcaataaa agccagcgct ttgttgatac gctcaatact gcgggtccta ccaattgcgt
     3721 gaacggtaac atccagtgcc ggagactgcc ccgcaccggt tacggcgaca cgcagcggca
     3781 taccaacttt acccataccc acttccagct catccgccgt cgcctgaata gcgtgatgaa
     3841 cgttttcagc ggtccagtca gtaatcgcgg ccagtttgtc acgaaccact tccagcggct
     3901 gacgcgctac cggacgcaga tgttttttcg cggcgtcggc atcgaactca gcaaaatctt
     3961 cgtagaaata acggcagctc tgtgccatct ctttcagcgt cttgcagcgt tcgcccagca
     4021 gtttcaccag atcagccagc tgcgggccgt tacgggtatc gatattttcc tgctcaatgt
     4081 gccactgtaa gtgagtagca acatactccg gcggcagcgc gttaatgtag tgatggttca
     4141 gccacagcag cttgtcggtg ttgaacgcac tggcagattt gctgacggca ttcagggtga
     4201 agtatttgat catctcttca cgagtgaaga tttcctgatc gccgtgggac cagcccagac
     4261 gcaccagata gttcagcagt gcttctggca aataaccgtc atcacgatac tgcattacgc
     4321 tgaccgcccc gtgacgtttg gacagttttt taccgtcatc gccgttgatc atagaaacgt
     4381 gcgcgtaaac cggcaccggc gctttcaggg ccttaagaat gttgatctgg cgtggcgtgt
     4441 tgttgatatg gtcttcgcca cggataacgt gggtgatttc catatcccag tcatcgacaa
     4501 ccacacagaa gttataggtt ggggaaccat cggtacggcg aataataaga tcgtccagtt
     4561 cctggttgct gaactcgatc ggaccacgga tctgatcgtc aaaaacaaca gaaccttcct
     4621 gcgggttagc aaaacgtaca acgcacggtt catcatcagc gtgatgctca tggctgtggc
     4681 ggcagcgacc gtcataacgc ggcttctcac ctttcgccat ttgctcttcg cgcagcgctt
     4741 ccaggcgctc tttagagcaa tagcatttat aagcagtgcc ctcttccagc atctgatcga
     4801 tcaccgcgtt gtagcgatca aaacgtttgg tctggtagta cggaccttca tcccactcca
     4861 ggctcagcca gttcatgcca tccataatgg cttcgatagc ttccggcgtg gaacgctcaa
     4921 gatcggtgtc ttcaatacgc agcacgaact caccgccgtg gttacgtgca aaaagccagg
     4981 agtaaagggc agtacgcgcg ccgccaacgt gcagatagcc tgttgggctt ggcgcgaagc
     5041 gagttttgat tttcatgaaa tggccttacg tttagaaaga tgccgacaac cggcaaatcc
     5101 tggaaaaatt gagtgggcga tattctatca ctcccgcctg attcctcaat gtagttcggg
     5161 tttctacctt acgcattatt gttttcgttg acaaattgcg caacacggtc tattttgcga
     5221 tcatcttgct taaatttacg acgaacgaac aatttcttta gaaaatgcgt tgactcattt
     5281 tgaactctcc ctataatgcg accccacaca gcggggggtg attagctcag ctgggagagc
     5341 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc aactacttta
     5401 tgtagtctcc gccgtgtagc aagaaattga gaagtgggtg attagctcag ctgggagagc
     5461 acctccctta caaggagggg gtcggcggtt cgatcccgtc atcacccacc actttctcac
     5521 cagctaaatt tcttgtaaca atgtgaagta ccgaagtggg tgattagctc agctgggaga
     5581 gcacctccct tacaaggagg gggtcggcgg ttcgatcccg tcatcaccca ccacttcggg
     5641 tcgttagctc agttggtaga gcagttgact tttaatcaat tggtcgcagg ttcgaatcct
     5701 gcacgaccca ccaatgtaaa aaagcgccct aaaggcgctt ttttgctatc tgcgatttgt
     5761 aagattgatt tttcttctca agttccttgt tcttctaccg atattacctc gtacagtgac
     5821 gaggactgaa caatggccac tatctcttca acttcaattc cttccataca aacacagagt
     5881 agtaacaggg catcacaagg tagcgatgtt gcttcacaaa tcgcgcggat aagtcagcaa
     5941 atcatcaaac tcactcaaca aattaaagag attgtagaca ctagcggcag tgctgaagac
     6001 aagcaaaaac aggccgaatt gattcaacag caaatcaccc tactggaaac acaactggcg
     6061 cagttgcaga aacagcaggc agaaaaggcg caggagaaag agcagcgttt gtctctggat
     6121 gtatcccttc taaatcctgt tgaaaaaacg actcatatcg atatctatat ctgatacaac
     6181 ggatcccctt cccgaccagc cattagcgca ttgccctggt ctcgtaccac gtcccataac
     6241 gcttcagcgg cggtggaaag tgaacggttc ttcctgcgca ccagcatcaa ctggcgttca
     6301 acaaccggcg taatgcgctt taccaccagt gggctacctt caggcaatgg tagcgccagt
     6361 gcgggaagaa tactgatgcc gatgcctgcg gctaccatcg ggaacagcgt cgccggatgt
     6421 ccaatctcct gcacaatatt cgcctgaata ccattgcgcg ccagcgctgc gtcaatcagc
     6481 ggtcggctgc ctgacgcgta atcctgcaac accaatttcg ctccctgtaa tgcctgccag
     6541 ggtacataat cttccacggc caaagcgcta tcgcgatggc aaagcagaaa gaaaggctcg
     6601 gaaagaatcg cttcacattg cagatcgccc actgggcctg gatcgatgac gatgccaaag
     6661 tcgacatctc cctggcgaat actttccatc acccactgct gcggacgatc gtgcaggaca
     6721 aactgaatat ctggatagcg gcgatggctt tcagcaatgc attgcggaat aagatgcgcg
     6781 gaaatggtct ggctggcagc gacccgaact tttccgctca gttgttgccc catacgcccg
     6841 gtatcgcgca acgtgctgtt aagttcatcc agcagtcgct caagacgcaa agccaactgc
     6901 tgccctgcat ctgtaagcac cacttcacgc gtggttctgt ccagcaggcg aacaccagta
     6961 tgattttcca gctccttcac actgtgactt actgccgact ggctcaagcc gatacgctct
     7021 cctgcacgac taaaactttt ctcctgcgct actgtgacga aaacctttaa ttgttttaaa
     7081 gaataattca tctgttttct tcatgaatgg atgcaataaa tcaattttat ttctcaaact
     7141 ggaagaagca caatagaacc atcgatcatc tggagtcttt atgaaacttt ttcgtatcct
     7201 cgatcctttc accttaaccc tgatcacggt ggtgttgctg gcctctttct ttccggccag
     7261 aggcgatttc gtccccttct ttgaaaatct gaccaccgca gctattgccc tgctgttctt
     7321 tatgcacggc gcgaagttgt cgcgtgaggc gattattgct ggcggtggtc actggcgact
     7381 gcatttgtgg gtaatgtgca gcaccttcgt gctgtttccg attctgggtg tactgtttgc
     7441 ctggtggaaa ccggtaaatg tcgacccgat gctctactcc ggttttctct acttgtgcac
     7501 tctcccggct accgtgcagt ctgcaatcgc cttcacgtca atggcgggcg gtaacgtcgc
     7561 ggcggcggtt tgttctgcgt cagcatccag cctgctggga attttccttt caccattgct
     7621 ggttggtctg gtgatgaatg ttcacggtgc agggggcagc cttgagcagg tcggtaaaat
     7681 tatgctgcaa ctgctgctgc cgtttgtgtt ggggcatctt tcccggccgt ggattggtga
     7741 ctgggtgtcg cgcaataaaa aatggattgc gaaaactgac cagacgtcca ttctgttggt
     7801 ggtttataca gcgttcagcg aagccgtcgt taatggtatc tggcataaag ttggctgggg
     7861 atcattgctg tttatcgtgg tggtcagctg cgttcttctg gctatcgtga ttgtagttaa
     7921 cgtctttatg gcacgccgac tgggcttcaa taaggcagat gaaattacta tcgtcttttg
     7981 tggttcgaaa aagagtctgg caaatggcat cccgatggca aacattctgt tccccacatc
     8041 ggtgatcggt atgatggtgc tgcccctgat gattttccat cagatccaat tgatggtctg
     8101 tgcggtgctg gcgcgtcgat acaaacgcca gaccgaacag ttacaggcgc agcaggaaag
     8161 cagcgccgat aaagcttaaa gcggacgctt caggggctgg accagttgcg tcagcccctc
     8221 ggttttaatc agcagcgtga tttgcattag ctcaccgagc ttccctgccg ggaactcatc
     8281 tttgcgggca aaccacagca gatactcctc cggcaggtcg attaagcgac gccctttgta
     8341 tttgccaaac ggcattatcg tattggctat ttcaatcagc tgctcttttt ccatctcagc
     8401 tacccagcaa acgcagcatt tccgcttcgt cgatgacttc aatgcccagt tcctgcgcct
     8461 tcgccagttt agatcctgca gcttcacccg caatcaccag atcggttttc ttcgacacgc
     8521 tgcccgcgac tttcgcgccc agttcgacca gtcgagcttt agcgtcatca cgcgacatct
     8581 ggcttaagct gcccgtaagc accacggttt taccagcaaa cgggctgtca atctcttccg
     8641 cgttgataac gatcggcgca ggccagtgaa caccttccgc caacagctcg ctgatgacat
     8701 tgcggttgct ttcttcggca aagaagttgt gaacgtggga tgcaacgaca atgccaacat
     8761 caggcacctt ttgcagctct tcaatcgaag cggcttccag cgcttccagc gtgccgaaat
     8821 atgccgccag acctgctgcg gtggcctcgc cgacttcacg gatgccaagt gcatagagga
     8881 agcgagcaaa ggtggtttct ttcgcttttt ccagcgcgtt aaccacgttt tgtgccgatt
     8941 ttggccccat acgctccagt ccggtcagtt tgcctgcggt gagtttgaac agatctgccg
     9001 gagtgtggac atattctttt tcaaccagct gatcgatgat tttgtcgccc attccgtcaa
     9061 catccatcgc acggcgggaa acaaagtgtt tcagcgactc tttacgctgc gcaccgcaaa
     9121 tcaggccacc ggtacagcgg gcaaccgctt caccttccac acgctcaacg tcagaaccac
     9181 ataccggaca atgcgtcggg aatacaacct cacgggtatc ttccgggcgt tcagaaagca
     9241 cgacgttaac cacctgcggg atcacgtcgc cagcgcggcg aatcaccact ttatcgccaa
     9301 tgcgtaaacc aagacgttcg atttcatccg cattgtgtaa ggttgcgtta ctcaccagca
     9361 cgccagcaac atggacaggt tccagacgcg caacaggcgt aatcgcgcca gtacgcccaa
     9421 cctgaaactc gacgtcacgc acaaaggtca tctgctcctg cgccgggaat ttaaacgcta
     9481 ccgcccagcg cggggcacgc gcgacaaagc caagctgctc ctgctgttcc agtgagttga
     9541 ccttaatcac cacgccgtcg atatcaaagc ccagcgtcgg gcggtcttct tccactttgt
     9601 gatagaacgc cagcacttct tccgccgatt cacaaagcgt tacccgatcg ctgaccggca
     9661 acccccactt tttaaattgc agtaaacggc caagatgagt atccggcagc tcgccacctt
     9721 ccagaacacc aacgccatag cagaaaaaag tgagcggtcg cttcgctgta atacgcggat
     9781 caagctgacg cagtgaacca gctgccgcat tacgtgggtt agcaaaaact ttcccgcccg
     9841 tgcgtcgcgc atcttcgtta atcttttcga accccgcctg cggcaggaac acttcaccac
     9901 gcacttccag acgcgccggg atattctctc catgcagctt cagcggaatg gcgcgaatag
     9961 tacgcacatt agacgtgata tcttccccgg tggtgccatc gccacgggtc gcggcactga
    10021 ctaaaacgcc attttcatac agaatactga cggcaaggcc atccagcttc agctcacagc
    10081 accaggtgac tttctcgttg tttttcagac ggtcctgcac acgtttgttg aaagcaagaa
    10141 agctttcttc atcaaaaacg ttatccagtg acagcattgg tacttcatgg cgtatctggc
    10201 tgaaagccgc cagcggcgca gcacctacac gttgggtagg cgaatcaggc gtaatcagtt
    10261 ctggatgttt agtttccagc tcgcgcagtt cgcgcatcag cctgtcgtat tcagcgtcgg
    10321 gaatttccgg cgcatccatc acatgataaa gatattcatg atggcgaagc gtcgttcgca
    10381 gttctgtcag ttgttgttcg attgattcca tatcgcacca tcaatgctaa aaacccccga
    10441 caagcggggg ttcgaagaag agttaatttg ccttaagtgt atcaggcgtt ggcgtctttg
    10501 acttcgcgga tgatgtcctg gtactcgcgc aatttctgcg gagtcatcat acggcgctga
    10561 tcgtcaagca cgacaccgcc cacttcatcg gcaatatgct gcgcagattg cagcatcagc
    10621 ttgaagttct gcagctcgtc accgtaagac ggtacctgca taaagatagt gacacccgga
    10681 gtagtgaaat ccttcatttc aggatcaaag gttcccggtt tcaccatatt cgccaggctg
    10741 aataacgccg ggccgctgcc atccgggcta agatgacgat ggtaaatatt catatcgcca
    10801 aaaatgaagc ccgcttgttg aatgctgtta agaagcagtt caccgtttag ctcgctaccg
    10861 tgatgcgccg cgacgttcat gataatcacc gcttctttgc gcttcggttt atccataact
    10921 ggagccggtt ccgctacagg ctcaggctgt ggtgccgcta cgggttctgc aggctggaaa
    10981 gcctgttgtg ccggttgcgg tgctgaatgc acaggctgcg gcgctggcgc gacctgtggc
    11041 gaaactggct gctgcaacgg ctgttcaggc tgcggctgat agacaggctg ctgcaccggc
    11101 tgcgctggac gcggagcatg ttgcggcggt acctgcgctt caggcggctg ctggaccggt
    11161 tgacgcggct gcgcagacgc ataaggcggt tggtactggt gttgcggcga cggacgagca
    11221 gcctcatgct cctgagcgtt agccggggca tgattcacgc ggtgaacacg aacctcacca
    11281 acgccctcat catcttcgac atcctcgtca taagaatcgt cgtcacgttt tgacttcatt
    11341 cgttttaatg gccgatcgcg gaacatagaa gatcgttctt tacggctggt ccagaaacca
    11401 tgtaccagta aagcgattat ggcgatcgcg ccaacaatga ttaatatcag acgcaaatcc
    11461 tgcatcatta tattctctgt tgttctaaca ccttgccacc acggcaaaca tttactcact
    11521 aagagtattt gccgattacc tcaagtgcaa gtgcactatt aactttcaca gcacaaagat
    11581 agatgaaatc gtgctttttg ctgttttttc gaacatatcc taactgtcca ttgcgcaatt
    11641 acccggtaaa atacgcagaa ttttcctagg attggtcaaa aggagctcat cctgattatg
    11701 gtttcatcat tcacatctgc cccacgcagc ggtttttact attttgcgca aggctggaag
    11761 ctcgtctcgc aacctgggat tcggcgtttc gttattttac cgctgctggt caatattttg
    11821 ttgatggggg gcgcattctg gtggctcttt acacagctcg atgtctggat cccgactctc
    11881 atgagttacg ttccggactg gctacaatgg ctgagttatc tgttgtggcc tctggctgtc
    11941 atctctgtgc tgttagtgtt tggctatttc ttctccacga ttgctaactg gattgccgct
    12001 ccgtttaacg gtttattggc tgaacaactg gaagcacgat tgactggcgc tacaccgcca
    12061 gataccggga ttttcggtat catgaaagat gtgccgcgaa tcatgaaacg cgaatggcaa
    12121 aaatttgcct ggtatctgcc gcgcgcaatt gtattactaa ttctttactt catccctggt
    12181 attgggcaaa ccgtcgcgcc ggtactgtgg ttcctgttta gcgcctggat gttagccatc
    12241 cagtattgcg attacccctt cgataaccac aaagtgccgt ttaaagagat gcgcaccgcc
    12301 ctgcgcacac gcaaaatcac caatatgcag tttggtgctt taaccagcct gtttacgatg
    12361 atcccgctgc ttaatctgtt catcatgccc gttgccgttt gtggcgcgac ggcgatgtgg
    12421 gtcgattgct atcgcgataa acacgcgatg tggcggtaac aatctaccgg ttattttgta
    12481 aaccgtttgt gtgaaacagg ggtggcttat gccgcccctt attccatctt gcatgtcatt
    12541 atttcccttc tgtatataga tatgctaaat ccttacttcc gcatattctc tgagcgggta
    12601 tgctacctgt tgtatcccaa tttcatacag ttaaggacag gccatgagta agatttttga
    12661 agataactcg ctgactatcg gtcacacgcc gctggttcgc ctgaatcgca tcggtaacgg
    12721 acgcattctg gcgaaggtgg aatctcgtaa ccccagcttc agcgttaagt gccgtatcgg
    12781 tgccaacatg atttgggatg ccgaaaagcg cggcgtgctg aaaccaggcg ttgaactggt
    12841 tgaaccgacc agcggtaata ccgggattgc actggcctat gtagctgccg ctcgcggtta
    12901 caaactcacc ctgaccatgc cagaaaccat gagtattgaa cgccgcaagc tgctgaaagc
    12961 gttaggtgca aacctggtgc tgacggaagg tgctaaaggc atgaaaggcg caatccaaaa
    13021 agcagaagaa attgtcgcca gcaatccaga gaaatacctg ctgctgcaac aattcagcaa
    13081 tccggcaaac cctgaaattc acgaaaaaac caccggtccg gagatctggg aagataccga
    13141 cggtcaggtt gatgtattta ttgctggcgt tgggactggc ggtacgctga ctggcgtcag
    13201 ccgctacatt aaaggcacca aaggcaagac cgatcttatc tctgtcgccg ttgagccaac
    13261 cgattctcca gttatcgccc aggcgctggc aggtgaagag attaaacctg gcccgcataa
    13321 aattcagggt attggcgctg gttttatccc ggctaacctc gatctcaagc tggtcgataa
    13381 agtcattggc atcaccaatg aagaagccat ttctaccgcc cgtcgtctaa tggaagaaga
    13441 aggtattctt gcaggtatct cttctggagc agctgttgcc gcggcgttga aactacaaga
    13501 agatgaaagc tttaccaaca agaatattgt ggttattcta ccatcatcgg gtgagcgtta
    13561 tttaagcacc gcattgtttg ccgatctctt cactgagaaa gaattgcaac agtaatgcca
    13621 gcttgttaaa aatgcgtaaa aaagcacctt tttaggtgct tttttgtggc ctgcttcaaa
    13681 ctttcgcccc tcctggcatt gattcagcct gtcggaactg gtatttaacc agactaatta
    13741 ttttgatgcg cgaaattaat cgttacagga aaagccaaag ctgaatcgat tttatgattt
    13801 ggttcaattc ttcctttagc ggcataatgt ttaatgacgt acgaaacgtc agcggtcaac
    13861 acccgccagc aatggactgt attgcgctct tcgtgcgtcg cgtctattaa aaactggcgc
    13921 taacaataca ggctaaagtc gaaccgccag gctagacttt agttccacaa cactaaacct
    13981 ataagttggg gaaatacaat gttccagcaa gaagttacca ttacagctcc gaacggtctg
    14041 cacacccgcc ctgctgccca gtttgtaaaa gaagctaagg gcttcacttc tgaaattact
    14101 gtgacttcca acggcaaaag cgccagcgcg aaaagcctgt ttaaactgca gactctgggc
    14161 ctgactcaag gtaccgttgt gactatctcc gcagaaggcg aagacgagca aaaagcggtt
    14221 gaacatctgg ttaaactgat ggcggaactc gagtaatttc ccgggttctt ttaaaaatca
    14281 gtcacaagta aggtagggtt atgatttcag gcattttagc atccccgggt atcgctttcg
    14341 gtaaagctct gcttctgaaa gaagacgaaa ttgtcattga ccggaaaaaa atttctgccg
    14401 accaggttga tcaggaagtt gaacgttttc tgagcggtcg tgccaaggca tcagcccagc
    14461 tggaaacgat caaaacgaaa gctggtgaaa cgttcggtga agaaaaagaa gccatctttg
    14521 aagggcatat tatgctgctc gaagatgagg agctggagca ggaaatcata gccctgatta
    14581 aagataaaca catgacagct gacgcagctg ctcatgaagt tatcgaaggt caggcttctg
    14641 ccctggaaga gctggatgat gaatacctga aagaacgtgc ggctgacgta cgtgatatcg
    14701 gtaagcgcct gctgcgcaac atcctgggcc tgaagattat cgacctgagc gccattcagg
    14761 atgaagtcat tctggttgcc gctgacctga cgccgtccga aaccgcacag ctgaacctga
    14821 agaaggtgct gggtttcatc accgacgcgg gtggccgtac ttcccacacc tctatcatgg
    14881 cgcgttctct ggaactgcct gctatcgtgg gtaccggtag cgtcacctct caggtgaaaa
    14941 atgacgacta tctgattctg gatgccgtaa ataatcaggt ttacgtcaat ccaaccaacg
    15001 aagttattga taaaatgcgt gctgttcagg agcaagtggc ttctgaaaaa gcagagcttg
    15061 ctaaactgaa agatctgcca gctattacgc tggacggtca ccaggtagaa gtatgcgcta
    15121 acattggtac ggttcgtgac gttgaaggtg cagagcgtaa cggcgctgaa ggcgttggtc
    15181 tgtatcgtac tgagttccta ttcatggacc gcgacgcgct gcccactgaa gaagaacagt
    15241 ttgctgctta caaagcagtg gctgaagcgt gtggctcgca ggcggttatc gttcgtacca
    15301 tggacatcgg cggcgacaaa gagctgccat acatgaactt cccgaaagaa gagaacccgt
    15361 tcctcggctg gcgcgctatc cgtatcgcga tggatcgtaa agagatcctg cgcgatcaac
    15421 tccgcgctat cctgcgtgcc tcggctttcg gtaaattgcg cattatgttc ccgatgatca
    15481 tctctgttga agaagtgcgt gcactgcgca aagagatcga aatctacaaa caggaactgc
    15541 gcgacgaagg taaagcgttt gacgagtcaa ttgaaatcgg cgtaatggtg gaaacaccgg
    15601 ctgccgcaac aattgcacgt catttagcca aagaagttga tttctttagt atcggcacca
    15661 atgatttaac gcagtacact ctggcagttg accgtggtaa tgatatgatt tcacaccttt
    15721 accagccaat gtcaccgtcc gtgctgaact tgatcaagca agttattgat gcttctcatg
    15781 ctgaaggcaa atggactggc atgtgtggtg agcttgctgg cgatgaacgt gctacacttc
    15841 tgttgctggg gatgggtctg gacgaattct ctatgagcgc catttctatc ccgcgcatta
    15901 agaagattat ccgtaacacg aacttcgaag atgcgaaggt gttagcagag caggctcttg
    15961 ctcaaccgac aacggacgag ttaatgacgc tggttaacaa gttcattgaa gaaaaaacaa
    16021 tctgctaatc cacgagatgc ggcccaattt actgcttagg agaagatcat gggtttgttc
    16081 gataaactga aatctctggt ttccgacgac aagaaggata ccggaactat tgagatcatt
    16141 gctccgctct ctggcgagat cgtcaatatc gaagacgtgc cggatgtcgt ttttgcggaa
    16201 aaaatcgttg gtgatggtat tgctatcaaa ccaacgggta acaaaatggt cgcgcctgta
    16261 gacggtacca ttggtaaaat ctttgaaacc aatcacgcgt tctctatcga atctgatagc
    16321 ggcgttgaac tgttcgtcca cttcggtatc gacaccgttg aactgaaagg cgaaggcttc
    16381 aagcgtattg cagaagaagg tcagcgcgtg aaagttggcg atactgtcat tgaatttgat
    16441 ctgccgctgc tggaagagaa agccaagtct accctgactc cggttgttat ctccaacatg
    16501 gacgaaatca aagaactgat caaactgccc ggtagcgtaa ccgtgggtga aaccccggtt
    16561 atccgcatca agaagtaatt cttgccgcag tgaaaaatgg cgcccatcg
//
LOCUS       DAJVUY010000088        16533 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.088, whole genome shotgun sequence.
ACCESSION   DAJVUY010000088 DAJVUY010000000
VERSION     DAJVUY010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16533
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.088"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(52..216)
                     /locus_tag="OQQ72_002563"
                     /pseudo
     CDS             complement(52..216)
                     /locus_tag="OQQ72_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280578.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
     gene            complement(295..389)
                     /locus_tag="OQQ72_002564"
     tRNA            complement(295..389)
                     /locus_tag="OQQ72_002564"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(353..355),aa:Sec,seq:tca)
     gene            682..2064
                     /locus_tag="OQQ72_002565"
     CDS             682..2064
                     /locus_tag="OQQ72_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HCS2012241.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            2074..4365
                     /gene="yicI"
                     /locus_tag="OQQ72_002566"
     CDS             2074..4365
                     /gene="yicI"
                     /locus_tag="OQQ72_002566"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HCS2012242.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGRCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4418..6127)
                     /locus_tag="OQQ72_002567"
     CDS             complement(4418..6127)
                     /locus_tag="OQQ72_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS2012243.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDAHLQGPDWAVTDLDLS
                     LRNMTFSKDDWQTQEGKLLMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6248..7639)
                     /gene="xanP"
                     /locus_tag="OQQ72_002568"
     CDS             complement(6248..7639)
                     /gene="xanP"
                     /locus_tag="OQQ72_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HCS2012244.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKTWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            7919..9124
                     /gene="gltS"
                     /locus_tag="OQQ72_002569"
     CDS             7919..9124
                     /gene="gltS"
                     /locus_tag="OQQ72_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HCS2012245.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9158..11239)
                     /gene="recG"
                     /locus_tag="OQQ72_002570"
     CDS             complement(9158..11239)
                     /gene="recG"
                     /locus_tag="OQQ72_002570"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCS2012246.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11245..11934)
                     /gene="trmH"
                     /locus_tag="OQQ72_002571"
     CDS             complement(11245..11934)
                     /gene="trmH"
                     /locus_tag="OQQ72_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HCS2012247.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(11941..14049)
                     /gene="spoT"
                     /locus_tag="OQQ72_002572"
     CDS             complement(11941..14049)
                     /gene="spoT"
                     /locus_tag="OQQ72_002572"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HCS2012248.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(14068..14343)
                     /gene="rpoZ"
                     /locus_tag="OQQ72_002573"
     CDS             complement(14068..14343)
                     /gene="rpoZ"
                     /locus_tag="OQQ72_002573"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HCS2012249.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14398..15021)
                     /gene="gmk"
                     /locus_tag="OQQ72_002574"
     CDS             complement(14398..15021)
                     /gene="gmk"
                     /locus_tag="OQQ72_002574"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCS2012250.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     DEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15279..>16533
                     /gene="ligB"
                     /locus_tag="OQQ72_002575"
     CDS             15279..>16533
                     /gene="ligB"
                     /locus_tag="OQQ72_002575"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
                     /protein_id="HCS2012251.1"
                     /translation="MKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRQQQQIKQW
                     DDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRK
                     MADKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSL
                     ISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSL
                     GVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVT
                     DGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLA
                     SVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP
                     PENRFNSLTCYFASDVCQEQFISRLV"
BASE COUNT         3753 a         4226 c         4494 g         4060 t
ORIGIN      
        1 gtataaaaaa gggtgttatg gagcgtgtaa aacaacatct tcaccttaat ggcgatacag
       61 ttggctgaga gccagcaggg ggcaaatcac ctgcaaataa acacggcaca tgctggcgcg
      121 catatcgcgg atgcgttcga ggacagaaga accgacaggc ggattcttca gccgctcatc
      181 gtccatcaca aaaccttaga ccaggtattc ctgaagccga ttgaatattg agcagtagaa
      241 aatatctgga ttgacagtat tacaaggggt tggagaacgt cagaagaggc attttggcgg
      301 aagatcacag gagtcgaacc tgtccgggac cgctggcggc cccaactgga tttgaagtcc
      361 agccgcctca ccggagacga cgatcttccg cgcctcgatt gctacatgga ggcggggcgc
      421 attatagcta cttccttgag tttctacatc ccccagatca gttttttccg cctaatacac
      481 gcagcgtatt atcacgaaag cattatagtt catataaaac tcatatttta caatgacata
      541 tgagcggaat taacgctacc acgatcacat aaaacaagaa tcataaatta ataaccagat
      601 atcggaatat tcgctctcac agggatggtt tacaaaatgc gttatcggtc tcagcacccc
      661 tatagcatca aggaaaagca gatgaagagt gaagtgttgt ccgttaaaga gaaaattggt
      721 tatggcatgg gagacgccgc cagccacatt attttcgata acgtaatgtt atatatgatg
      781 ttcttttata ccgatatttt tggcattcct gccggttttg tcggaaccat gtttttggtc
      841 gctcgtgcac tggatgcgat ttccgatcct tgcatggggt tgttggccga tcgaacgcgc
      901 tctcgctggg gtaaatttcg tccgtgggta ctgtttggcg cactgccatt cgggatcgtc
      961 tgtgtactgg cctatagcac gccagatctc agtatgaacg gcaaaatgat ctatgcagca
     1021 attacttaca ccctacttac cttactttat accgtcgtca atatccctta ctgcgcattg
     1081 ggtggtgtaa tcaccaatga cccgactcag cgtatctcgc tgcaatcctg gcgttttgtg
     1141 ctggcgaccg cgggaggcat gctttctact gttctgatga tgccactggt taatttaatt
     1201 ggcggtgata ataaaccact cggtttccag ggcggtatcg cggtcctttc cgtggtggca
     1261 ttcatgatgc tggcattttg tttcttcacc actaaagaac gcgttgaagc accacctaca
     1321 acaacgtcta tgcgggaaga tttacgtgat atctggcaaa acgaccagtg gcggattgtc
     1381 ggtttactaa ccattttcaa tatcctggcg gtgtgcgtac tcggtggggc gatgatgtat
     1441 tacgtcacat ggattttggg cacgccggaa gtgtttgtcg cttttctcac cacttattgc
     1501 gtgggtaacc tgattggttc cgcactggca aaacctctga ccgactggaa atgtaaagtc
     1561 actatcttct ggtggacgaa cgccctgctg gcagtgatta gcctcgcgat gttctttgtt
     1621 cccatgcagg ccagcatcac tatgtttgtc ttcatcttcg tgattggtgt gttgcatcaa
     1681 ctggtgacac ctatccagtg ggtaatgatg tccgataccg tcgactacgg cgagtggtgc
     1741 aatggtaaac gcctgaccgg gatcagtttt gctggcacgc tgtttgtgct caaactgggg
     1801 ttggccttcg gcggcgctct tatcggctgg atgctggctt atggcggata tgatgcggca
     1861 gaaaaagcgc agaacagcgc cacgattagc atcattattg cgctattcac gattgttccg
     1921 gcgatctgtt atttgctgag cgcgattatc gctaaacgct actactcact cacgacgcac
     1981 aatctgaaaa ccgttatgga acagctggct cagggtaaac gccgttgcca gcaacaattc
     2041 acctctcaag aagtgcagaa ctaaggaacg gcaatgaaaa ttagcgatgg aaactggttg
     2101 attcaacctg gcctcaattt gattcacccg cttcaggtgt tcgaggttga acagcaggat
     2161 aatgaaatgg tggtctatgc tgccccccgt gatgtgcgtg aacgtacctg gcagcttgat
     2221 acgcctttat ttacgctgcg ctttttctcc ccacaggaag gtattgtcgg tgtgcggatt
     2281 gagcattttc agggagcgct gaataacggt cctcattatc cgctcaatat tttgcaggac
     2341 gtgaaggtca caatcgaaaa cacagaacgt tatgctgagt ttaaaagtgg caacttaagc
     2401 gcgcgtgtca gcaaaggtga gttctggtca ctcgattttc tgcgcaacgg tgaacgtatt
     2461 accggtcagg acacgaataa tcaacgaaat tatatgtttg agcggcttga tcttggcgtt
     2521 ggcgaaacag tttatggtct gggagagcgt tttactgccc tggtgcgcaa tggtcagacg
     2581 gtagagacct ggaaccggga cggcggcaca agtactgaac aggcgtataa aaatatcccg
     2641 ttctatatga ctaaccgtgg ctatggggtg ctggtcaatc acccccagag tgtctctttt
     2701 gaagtgggat cggagaaagt ctccaaagtg cagttcagcg ttgagagcga atatctcgaa
     2761 tactttgtta tcgacggtcc gacgccgaaa gcggtacttg atcgttatac ccgttttact
     2821 ggtcgtccgg cgctgccgcc cgcatggtcc ttcggcctgt ggctaaccac ttcatttacc
     2881 accaactacg acgaagcgac ggtaaacagc tttatcgatg gtatggcgga acgcaatctg
     2941 ccgctgcatg ttttccactt tgactgtttc tggatgaaag ccttccagtg gtgcgatttt
     3001 gagtgggacc cgctgacttt cccggacccg gaagggatga tccgccgcct gaaagcgaaa
     3061 gggctgaaaa tctgcgtctg gattaacccc tatatcggtc aaaaatcccc cgtctttaaa
     3121 gagttacaag agaaaggcta tttactcaaa cgcccggacg gttcgctatg gcagtgggat
     3181 aaatggcagc caggtctggc gatttatgac tttaccaatc cggatgcctg caaatggtac
     3241 gccgacaaac tgaaaggtct ggtcgcgatg ggcgttgatt gctttaagac cgactttggc
     3301 gaacgtatcc caactgatgt tcagtggttt gacggttccg atccgcagaa aatgcataac
     3361 cattatgcgc acatctacaa cgaactggtg tggaacgtgc tcaaggacac cgttggtgag
     3421 gaagaagctg tcttgtttgc ccgctcggcc tccgtcggtg cgcagaaatt cccggtacac
     3481 tggggtggcg attgttacgc taactacgaa tcaatggcgg aaagcctgcg cggtggtttg
     3541 tctattggcc tttcaggttt tggcttctgg agccactata tcggcggctt tgaaaatacc
     3601 gctccggcgc acgtttacaa atgctggtgc gcgtttggtt tgctctccag ccatagccgt
     3661 ttacacggta gcaaatctta tcgtgtgccg tgggcctacg atgatgagtc ctgtgatgtg
     3721 gtgcgcttct tcacgcaact gaaatgccgc atgatgccgt atctgtatcg tgaagctgcg
     3781 cgtgcaaacg cgcggggtac gccgatgatg cgggccatga tgatggagtt cccggacgat
     3841 ccggcttgtg attaccttga ccgtcaatac atgttaggcg acaacgtgat ggttgcgccg
     3901 gtgttcactg aagcgggcga tgtgcagttc tacctgccgg aaggtcgctg gacacacctg
     3961 tggcacaacg atgagctcga cggtcgttgc tggcataaac agcagcacag cttcctgagt
     4021 ctgcccattt atgtgcgtga taacacccta ctggcgctgg gcaacaacga tcaacgtccc
     4081 gattacgcgt ggcacgaagg cacggcattc cacctcttta atctgcaaga cgggcatgaa
     4141 gccgtctgtg aagtgcccgc tgctgacgga tcggtgatct ttactttaaa agcagcacgt
     4201 actggcaaca cgattactgt gactggtgcg ggcgaggcga agaactggac actgtgcctg
     4261 cgcaatgttg tgaaagtaaa tggtctgcaa gacggttcgc aggctgaaag tgagcagggg
     4321 ctggtggtga agcctcaagg gaatgcgctg acaattacgt tgtaatctat tgatggaatg
     4381 ccgggtacgt ctgagtcgta cccggcgaga ttgatgttta ctgcaccagc tctgccgacg
     4441 taacttcacc gctggaaacg atgccagcat tcatggtttg agtcacttgc tgctttgcgg
     4501 cgttcacggc atgcaattgc ccgctaaccg taggtttcag cggggcattg gcctgaatat
     4561 ctccactggc ggtaagctga atattgccgt cgccagtcaa cggtaattca ggccatcccc
     4621 attgttgcaa aatattcacc ggcacaccgc gtccattcag gctgatatgg gtctgacgtt
     4681 gtggcgtttg tgaaacactg gcagtggctt ccagaatgcc tttttcagta aatgcactca
     4741 gttcgctgat attcaccgtg ctgctgttgg cggtcagcgc cagcgacggg cgacgaacat
     4801 caacacgatt gaatgtcgcg gcggcggcat tcagattcgc cgagccactc cagacgcccc
     4861 atttatgatc ggtaaccagc gtcaggttgg caccgtaacc atcgagcgtg gtgagctgcc
     4921 acgggaagtc agggtcgata tcaatgatca gattgcggct ggcgctaaat ctcttcagtt
     4981 gcaggctgtt taaccaaccg ggtgtcgttt ccatccacaa ctgttgccag tttttcggca
     5041 aggtatattc cagcccggca attgccgcat catcaaggat caacgttttc ccgtcacgca
     5101 gccagttccc tgacgttctg accatacccc cttcccagcg gctggtgaac tggcgcagcg
     5161 ctacgccctg cggggaaaat tccgcgttta taatcgggtc aaataaatgc agcgaaccat
     5221 aaatgaactc gctagcgttc atcaacagtt tgccttcttg tgtctgccag tcatctttac
     5281 tgaaggtcat gttgcgcaag ctgagatcga ggtcggtcac cgcccagtcc ggaccttgca
     5341 aatgagcatc gatcacttcc aggcgaccaa tctgcaacga cgggacagag cgtaatggcg
     5401 caaagaagtc ggttagcgat ttttcgcttt gtagacgtat atccgccatg cgcaggtttt
     5461 ccacttgcca gctgccgtcg gcgttacgct gcgcgtttcc ggttaatgtc ccgcgggcga
     5521 tgtcggcacc caggttagtc agcgtaacgc gatcgttatc aatactgcct tcaatcagta
     5581 cattggtggc aggaacatca ttgagcgaaa gcgatccggc actaaactga atctgcgcct
     5641 tcgtacccag cactttaccg gcttttggtg accacggaac tacgccgcca tttacccgct
     5701 gcgcgctcag tttccattcg ctattcgggc tattaaacgc catatcacgc agttgcagac
     5761 gatcggcttt gaacggtagc ggcgcggtct ggtcggtgag attcagcgtc ccgttttcca
     5821 gcaggatggt atcgacatgg cgtggttcgg tcagttgccg actgcttagc gcaatgtcga
     5881 cacttttggc caccagggtc gcgggctgac catcacgacc aaacgtgaca ttctccagca
     5941 cgatatgaga tggcgcggaa aaacggtgat ccatcgcccc gaaggccaga tgatagtcgc
     6001 tattctcgga aacccatgcg ctgatatgtt ctgctcccca gcgggtttgc agaagaaaat
     6061 agaggccagc gatcaccact aacagagcga tgagaatgta gagaagcagc ttcccaataa
     6121 atttcatggt cttccattcc gtgaaatgca cataagagag ttatgcacga tttacgcgca
     6181 atcctcaagg cgggaatggt gaaagaggtg agactgcggc ggtaattatc ttaccgccgc
     6241 cagtgaatta ctgtttttct ggtgggaaaa tcagattcag cacgatggca gtaataccgc
     6301 ccgcggcgat cccggaggag agcaggtttt tcagccattc aggggcaaac tgcaaaatca
     6361 gcggctgctg agacacgccc agaccaaccg ccagcgacag cgcgataatc agaatcgccc
     6421 gacggttcag cggctcacga gaaacgatac gcacaccgga ggcggcgatg gtgccaaaca
     6481 ttacaagcgt tgcgccgccc agaaccggtt ctggaatgtg ttgtacaaaa ccgctcactg
     6541 ccgggaacag acccagcacg atcaacatca gcgcgacgac aaaaccgaca tagcggctgg
     6601 caacaccagt caactggatc actccgttgt tttgcccgaa gcaggagttc gggaaggtgt
     6661 taaacaccgc cgaaacaaac gagttcaggc cgtttgccag cacgccgcct ttcaggcgtt
     6721 tcatgtacag cggaccggac actggctgtt cggaaacgtc agaggtcgac gtgatatcgc
     6781 caatggtttc cagcgaagtg atcataaaga ccagcatcag cggcagcagc agactccatt
     6841 caatgccaag accgtaatag agcggcgttg gcaccataat cagttcttgc gtcatcggtt
     6901 cgttgctttc tggcaacatg cccataaacc acgccagcgc atatccggcc gccatcgcaa
     6961 tcaccagtga ggccacgcgt aagtaagggt tacgttgacg gttaagcagg ataattaagg
     7021 ctaagaccac gcctgccagc agcagatttt tcggtgcgcc gaaggtgtta tcgctcatgg
     7081 ctgcgtaacc gccgccaatg gacgttaacc caacctgaat tagcgacagg ccgataatca
     7141 tcaccacaac gccagaaacc agcggcgtaa taatgcggcg cgccagatgc agaacgcggg
     7201 agatcaccat ctcggtgcaa cttgccagca tcaacgtgcc gaacaaagcc gccatcatgg
     7261 taggaacatc agcaccaccg gttttcagcg cggtaccgcc cataatcagc ggggcaacaa
     7321 agttgaagct ggtgccctga atagacaaca gcccggagcc aaccggaccc caggtcttaa
     7381 tttgaataat cgatgccaca ccggaggcaa acagcgacat actaataatg tgttgcgtgt
     7441 cttgtgccgg taaacccagc gcctggcaga ttaatagcgc tggcgtgatc accgcaacga
     7501 acatcgccag cagatgctga caggcggcaa acagggtttg aggaagcggc ggacgatctt
     7561 caagacggta aatcagttcg ctgttttgag tctgcgcaac cggttgcgca ttttctgact
     7621 cgagggtgga aacagacatc gaaaacaatc ccgtggtagc aaagcgggca ttttagctga
     7681 ccgaaagaga aaagcaaacg tttgccacat cctcatctaa atatttaaat gagataaatg
     7741 cactttttta tataactttt ggtatttttc tgcttaaaat ccatgccatt tgttcattaa
     7801 cagctgagaa tttgacccag gaaagcataa ctcgataccc gtcatagttc atgaagttgc
     7861 cactgcgcga tgaagtatga cgagtatgaa agagtgatgc ggatacaaag gagtaactat
     7921 gtttcatctc gatactttag caacgcttgt tgccgcaacg ctgacgttgc tgctcgggcg
     7981 taagttggtc cattccgtct cctttttgaa gaaatacacc ataccggaac ctgttgcggg
     8041 tggtttgttg gtggcgctgg cgctactagt actgaaaaaa agcatgggct gggaagtcaa
     8101 ctttgatatg tccctgcgcg atccgttaat gctggctttc ttcgccacca ttggcctgaa
     8161 cgccaacatt gccagtttgc gtgccggtgg gcgtgtggtt ggcatcttct tgattgtggt
     8221 tgttggtctg ttggtgatgc aaaatgccat tggcattggt atggctagcc tgttagggct
     8281 tgatccgctg atggggctgt tggccggttc tattacgctt tccggcggtc acggtacggg
     8341 cgctgcgtgg agtaaattgt tcattgaacg ttatggcttc accaatgcga cggaagtggc
     8401 gatggcctgt gcaacgttcg gtctggtgct gggcggcttg attggcggtc cggtggcgcg
     8461 ctatctggtg aaacactcca ccacgccgaa cggtattccg gatgaccagg aagtcccgac
     8521 ggcgtttgaa aagccggatg tgggacgcat gatcacctcg ttggtgctga ttgaaactat
     8581 cgcgctgatt gctatctgcc tgacggtggg gaaaattgtt gcgcaacttt tggctggcac
     8641 tgcttttgaa ctgccgacct tcgtctgtgt actgtttgtt ggcgtgattc tgagcaacgg
     8701 tctgtcaata atgggctttt accgcgtctt tgagcgtgcg gtatccgtgc tgggtaacgt
     8761 aagcttgtcg ttgttcctgg cgatggcgtt gatggggctg aaactgtggg agctggcttc
     8821 gctggcgctg ccgatgctgg cgattctggt ggtacagacc atcttcatgg cgttgtatgc
     8881 catcttcgtt acctggcgca tgatgggcaa aaactacgat gcggcagtgc tggctgcggg
     8941 tcactgtggt tttggcctcg gtgcaacgcc aacggcaatc gccaacatgc aggcgatcac
     9001 tgaacgcttt ggcccgtcgc acatggcgtt tttggtggtg ccgatggtcg gtgcgttctt
     9061 tatcgatatc gtcaatgcgc tggtaattaa gttgtatttg atgttgccga tttttgccgg
     9121 ttaaccgatg aagcggcggt cttctcaccg ccgcctttta cgcattcgag taacgttctg
     9181 tctccggcat ccagcgttct atcaaggctt ttgcctgttg tgggtaacgt tcgtgaatat
     9241 gtcgcgccag gcgctgaact tccgggatca tcgcctgatc gcgcagtaaa tccgccactt
     9301 taaattcagc attacccgtc tgacgcgtgc ctaacaattc gccagggccg cgaatctcca
     9361 gatctttttg cgcaatcaca aaaccgtcgt tactgtcgcg cagcacttgc aggcgaattt
     9421 gcgccgtttt agaaagcggc gttttgtaga gcagcacgca gtgagaagcc accgcgccac
     9481 gacctacgcg cccgcgcagc tggtgtaact gcgccagacc cagacgctca gggttttcga
     9541 taatcatcag gctggcgtta ggcacatcaa caccgacttc aataacggta gtggcaacca
     9601 gcagatgtag ctcaccttgt ttaaacgacg ccatcaccgc ctgtttctcg gctggtttca
     9661 tccgcccgtg taccaggcca acattcaatt ctggtagcgc cagtttcaac tcttcccagg
     9721 tagcttccgc cgcctgcgct tccagtaact ctgactcttc aatcaacgta caaacccagt
     9781 acgcctgacg accttcagtt atgcaggcat ggcgcacgcg gtcaatgatg tcggtacggc
     9841 gggtatcagg aatagcgacc gtagtcactg gcgtgcggcc tggcggcagc tcatctatca
     9901 ccgaggtatc gagatcggca tacgccgtca ttgccagcgt gcgggggatc ggcgtggcgg
     9961 tcatgatcaa ctgatgcgga tggaagcctt gctgctggcc tttctcccat aacgccagac
    10021 gctgatgcac gccaaagcga tgttgttcgt cgataatcac cagcgccaga ccgttaaact
    10081 gcacctgttc ctggaagatg gcgtgcgtac caacaatcat ctgcacctga ccgctggcga
    10141 tggcttcctg ctgagacagt cgcgctttgc ctttctgctt accggcgagc cagcccactt
    10201 cgataccgag cggttcaaac cagttgcgga agttattggc gtgctgttcg gcgagtaatt
    10261 cggttggtgc catcaatgcc acctgtttgc cgtgggcaat cgcacgcagc gcggcgaggg
    10321 cggcgaccag cgttttaccg gaacctacat cgccctgtac caggcgcatc atcggcacat
    10381 ccagcgccat atcgcgctcg atctccgcca ctacgcgtgc ctgtgcgccc gttggcttga
    10441 acggtaaggc tgcgaggagt ttatttttca gcgcatcatt ggcgctcagc ggctgggcat
    10501 gaaaacgctg tgctccggca cgtaaggcta acatgctgag gttgtgcgcc agcagttctt
    10561 ccagaatcag acgacgttgc gccggatgct gcccggtttc cagatcgcta agctgtagcg
    10621 tcggtggcgg gcggtgcaaa gtgcgcaacg cttccggtag cgtcatcatt ccttgtgaca
    10681 gttccggcgg caggagttct tcaatggcgc aggtgtcgag cagatccagc gcctggtcgg
    10741 ttaatttacg cagcgtggcc tgctttacgc cttccgttgt tggataaacc ggcgtgagcg
    10801 tttcctgtaa ttctggcgtg ctgagatcgc cctgcacgcg gtattccggg tggatcatct
    10861 ccgcaccata tttaccgcgc tttgcttcgc cataagccag tacacggcgg cccgtcgcca
    10921 ggctattttt cattgccgcg ctgaaattga aaaagcgcat ggtgaggatg ccggaaccgt
    10981 cgctgatctg gcaggtcatc atccgccgac cgccgaagga gatattgcag ttcagcactt
    11041 cgccttccac cgtggcataa acgcccggca gtagttctcc gatggggtag agatgggtgc
    11101 gatcttcgta gcgcagggga aggtgtaaga gtagatcctg cacggtatgc aggttgattt
    11161 tcgccagttt gttactaagt gctgcgccaa cgcccgttag ggaactgagt gggacagcat
    11221 ctaacaggcg acctgtcatg gcacttaccc tgcagcctgc atagtagccc accagtcggc
    11281 atcagcttcg atctcgcctt gctgattgac gtggggataa ggcaggcctt tgcgttttgc
    11341 gactttcgcc agcaccggat agccgccttc aaacaacagg cgttgttgct ctgcttccgg
    11401 caacatgctg ttttcacgca ggtacatgcc tgcattttgc cgctgacgct gggcttcgta
    11461 aagaatgagg gctgaggcaa cggaaacatt cagcgactgc accatgccga tcatcggaat
    11521 gatgatgtcc tgatccgcca gggccaatgc ttcctgcgtg atgcccgttt tctcctgtcc
    11581 catcaaaatg caggtcgggc gagtgtaatc aatttcgcgg aaatcgacag cgttatcaga
    11641 aagatgggtt gccagaatct gcatgccctg gcctttgaga tgagcgacgg catcgccaat
    11701 ggtgcggtgt gttttcacct gtacccagct gttactaccc gccgctgccg aagccatggt
    11761 gcgcatgcgg ctaccaggcc agacggcgtg aacttcatgt acgccaacgg catctgcggt
    11821 acgaataatc gcagaaacgt tatgaggttt gtggacctgc tccatgcaga cggtcagatc
    11881 aggctgccgc ctggcgagca tttcgcagat gcgtgcataa cgtgttgggt tcataaaaca
    11941 ttaatttcgg tttcgggtga ctttaatcac gtctggcatc acgcggattt tgcgcatgat
    12001 attcgccaga tgcacacggt cacgagcggt cagacgaata aaggcgctgt agacgcgacc
    12061 atctttctct tccgtattca aactttgaat attcgaagtc gtggtgttaa ttgccgccgt
    12121 caggtttgcc agcgcaccct gatgattgaa catctccacc ttgatttcgg tgatgaactc
    12181 ctgcgccgtc tctttatccc attccacagc cataaacttc tctggctctt tctggtagcc
    12241 acggatgtta cggcaggatt catggtggat caccagacct ttaccggggc tgacgtgggc
    12301 gataatcggg tcgccaggaa tagggcggca gcatttcgca aaggtgatca gcacgccatc
    12361 cgcgcctttg atcggcagat gcccgtggct ttgagtcgcc ggtggaatgg aggcgtcccc
    12421 atgttgtaga tttttcgcga ccaccacgct cattgcgtta ccaaggccga tttctgccag
    12481 cagatcgtca agcgttgcca gcttcatgcg atccagctcg cgctgaatat tttcctgcgg
    12541 gatttcattg agcttacggc taccacccaa agcatggttg agcagacgac ggcccaggct
    12601 tacagaatca tcacgcttga ggtttttcag caactgacga attttggcgc gcgctttcga
    12661 gctaacgaca aagttcagcc aagcggcatt cgggcgagcg cccggagcgg taatgatttc
    12721 aacggtctga ccgctagtaa gcggctgcga cagcgggtaa ggctggcggt cgacgcgtgc
    12781 gcccacgcag gcatggccga tatcggtatg cactgcataa gcgaagtcga cgggcgttgc
    12841 accggcaggc agctcgacaa tgcgcccttc cggtgtgaaa acgtaaatct catccgggaa
    12901 gagatcggat ttaacgctct cgataaattc aaacgaacta ccggcgctct gttgcagctc
    12961 cagcaggctt tgcatccagc gctgggcgcg tatttgtgcg gtagtactgg tttcgccgtg
    13021 ctctttataa gcccagtgcg cggcaacacc catctccgcc atctgatcca tatcttcggt
    13081 acggatctgg acctcaaccg gcacgccgtg cgggccaatc atcgaggtgt gcaacgactg
    13141 atagccgttc gcttttggaa tggcgatata gtctttcacg cggcccggac gcggcttgta
    13201 caggctgtgc atctggccca gcacgcgata acaggtgtca gaatcattga cgatcacgcg
    13261 gaaagcgtag atgtccatga ttgagtgaaa acgctgctct ttgagcacca ttttgcagta
    13321 aatcgaataa agatgctttt cgcgaccact gacgcggcac ggtattcccg cttcctgcaa
    13381 acgcccttcg atttcagaaa gaatcttctg gatcatctct ttacggttgc cgcgcgcggc
    13441 tttcaccact tctttgatta cgcgataacg gttgggatac agcgcctcaa aacccagctc
    13501 ttcgagttcg gttttaatgt ggtggatacc taaacggtgc gccagcgggc tgtaaatttc
    13561 gagagtttca cgggcgatgc ggcgacgttt gtccgggcga agtgagccca gcgtgcgcat
    13621 gttgtgggta cggtcggcaa gtttgatgag gatgacgcgg atatcctgca ccatcgccat
    13681 aatcatcttg cgaaagtttt cggcctgcgc ctctttctta tcgcggaact tgagtttatc
    13741 aagtttcgac accccctcta ccagctcggc gacgctttta ccaaaaagct gttccatatc
    13801 ctggtaggtg gcgggagtat cttcaatcac gtcatgcagc agcgccgcca tcagcgtttc
    13861 atagtcgagt ttcatctcgg ccagaatgca ggcaaccgct accgggtgcg tgatataggg
    13921 ttcaccgctt gaacgtgttt gcccctcgtg agcatcacgt gcaacgagat acgcctgccg
    13981 cagacgcttg atttggtctt ccggcaggta ggtttgaatc agttgattca ggctttcaaa
    14041 cagatacaag ggcgacccgc tttgtgatta acgacgacct tcagcaatag cggtaacggc
    14101 ttgtaattca gcggcttcct gctcttgctg ttcctggcgt tcgcgaacgt cgaggatctg
    14161 gttgttgatc agaccttctt cgatttcgcg cagcgcgatt acagtggttt tatcgttttc
    14221 ttccggtacc agcggatcct ttccgcctac ctgcatctga cgagcgcgac gcgcggcgac
    14281 cagtaccagg tcaaaacggt taccaatttt ctctacagcg tcctgaacag ttacgcgtgc
    14341 catacttaaa aagctccaca ggtgaagaaa tgactgggca tgatactgaa atcaggttca
    14401 gtctgccaac aatttgctga ttaaagcgtc atgacgctgc ttttggcggc tcatgcgcag
    14461 acgttcggcg cgaataatgg tcttcaaatc ggtcaacgcg gtatcgaagt catcattcac
    14521 aatcaggtaa tcatattcgt cgtaatggct catttctgca acagcttgcg ccatacgctt
    14581 tgcaatgacc tcttcgctgt cctgaccgcg accgcgtaga cggcggtcca gttcaatttt
    14641 agacggcggt aaaataaaga tactccgcgc gtgcggcatc ttctggcgaa tttgctgcgc
    14701 gccctgccag tcgatatcga gaaaaacatc gacaccggtc gccagtactt gctcaatggc
    14761 ctcacgcgaa gtgccatagt aattaccaaa aacttctgcg tgttcgagga acgcatctct
    14821 gctaatcatt tctttaaatt catcatgatt aacaaagaaa taatgttcac cgtggacttc
    14881 accaggacgc ggttggcgtg tggtgtgtga aacagaaacc tgggtgtcat acaacggttg
    14941 ggtttttaat aaagcctgaa tcaggctgga tttacccgcg ccactggggg cagaaacaat
    15001 ataaagcgtg ccttgagcca tgagtatctt tcgtatgtga ttagcgaaat aaagcctaca
    15061 tacgagctta ttatacacgg cgcggccatg tgacgtagcc cttgctcaca ctttttgcgc
    15121 aaagttgttg cgttttgcgt agctgcttcc gcatttgcct gtgatttact gcaataaaga
    15181 cgattctcag gaagcgtcct cgcagactcc gtttttgcca ctcggctttg ccttcaccac
    15241 gttgtatatc tgccagcctg actacagcgg aggtgaagat gaaagtatgg atggcgatat
    15301 taataagtat cttgtgctgg caatcatctg tgtgggcggt ctgtccggcc tggtcgccag
    15361 ccagagcaca ggaagaaatt ttccgccagc aacagcaaat aaaacagtgg gacgatgact
    15421 actggaagga aggaaaaagt gaggtggaag acggtgttta cgatcagtta agcgcccgtc
    15481 ttacgcagtg gcaacgctgc tttgtgagcg agccccgcga cgtgatgatg ccgcctttaa
    15541 atggtgcggt tatgcatccg gttgcccata cgggtgtacg caaaatggcg gataaaaacg
    15601 cattaagtct gtggatgcga gaacgtagcg atctttgggt gcagccaaaa gttgatggcg
    15661 ttgcggtaac cctggtttat cgggacggga aactgaacaa agcaatcagt cgcggtaatg
    15721 gcctgaaagg cgaggactgg acgcagaaag ttagcttaat ttccgctgtg ccgcaaaccg
    15781 ttagcgggcc tttagccaac agtacgcttc agggggaaat atttctccag cgcgaggggc
    15841 atatccaaca acaaatgggg ggaataaatg cccgcgcaaa agttgctggc ttgatgatgc
    15901 gccaggacga tagcgacacg ctgaattctc tgggcgtttt tgtctgggca tggccggatg
    15961 gaccgcagtt aatgtctgat cgtttaaaag agctggctac cgcaggtttt actctaacgc
    16021 agacgtatac ccgtgcggtg aaaaatgctg atgaagttgc gcgcgtacgc aatgagtggt
    16081 ggaaagcgga attacccttc gtcaccgatg gcgtagttgt acgagcggcg aaagagccag
    16141 aatcccgcca ttggctaccg ggccaggcag agtggctggt ggcctggaaa tatcaacctg
    16201 tagctcaggt tgccgaagtg aaggcgattc agtttgcggt gggtaagagc ggtaaaatat
    16261 cggtggttgc gtcactcgca tctgtcatgc tggatgataa aaaagtccag cgggtgaata
    16321 ttggttccgt caggcgctgg caggagtggg atattgcgcc tggtgatcag attctcgtca
    16381 gccttgccgg tcagggtatt cctcgcattg atgatgtggt gtggcgcggt gcagaacgta
    16441 caaaaccgac accgccagaa aaccgcttta actcgttgac ctgctacttt gcttctgatg
    16501 tttgtcagga acagttcatt tcacgcttag tct
//
LOCUS       DAJVUY010000089        16521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.089, whole genome shotgun sequence.
ACCESSION   DAJVUY010000089 DAJVUY010000000
VERSION     DAJVUY010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16521
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.089"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            95..2323
                     /gene="crfC"
                     /locus_tag="OQQ72_002576"
     CDS             95..2323
                     /gene="crfC"
                     /locus_tag="OQQ72_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clamp-binding protein CrfC"
                     /protein_id="HCS2012252.1"
                     /translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAAQLAL
                     PWSQPNIAERYAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM
                     TALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRAL
                     MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE
                     FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD
                     EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS
                     SMWGYLANRARYELANNGKLPAPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ
                     LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ
                     LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDALNAQLAALFQD
                     DSEPLSEIRTCCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELS
                     ESGFRPGFHFPVFHGVVPHVNTRQLFSEVISHQEATDEQSTRLGVVRETFSRWLNQPD
                     WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS
                     CLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHGWIYTDAQLLRDDIQTLFTAE
                     RY"
     gene            2320..3203
                     /locus_tag="OQQ72_002577"
                     /pseudo
     CDS             2320..3203
                     /locus_tag="OQQ72_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418534.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjcZ-like family protein"
     gene            3467..4969
                     /gene="proP"
                     /locus_tag="OQQ72_002578"
     CDS             3467..4969
                     /gene="proP"
                     /locus_tag="OQQ72_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709830.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HCS2012253.1"
                     /translation="MLKRKKVKPITLRDVTIINDSKLRKAITAASLGNAMEWFDFGVY
                     GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
                     IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK
                     RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR
                     HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYY
                     MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA
                     LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
                     FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT
                     PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE"
     gene            5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ72_002579"
     CDS             5035..5172
                     /gene="pmrR"
                     /locus_tag="OQQ72_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000797656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxT activity modulator PmrR"
                     /protein_id="HCS2012254.1"
                     /translation="MSDAHTLLQVNGGECNEKPCLYESLTTVFSVLVVSSFLYIWFAT
                     F"
     gene            complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ72_002580"
     CDS             complement(5148..6248)
                     /gene="pmrB"
                     /locus_tag="OQQ72_002580"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PmrB"
                     /protein_id="HCS2012255.1"
                     /translation="MNLMRFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI
                     QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ
                     KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP
                     LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE
                     DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS
                     NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL
                     HHGQFFLQNRQETSGTRAWVRLKKDQNVANQI"
     gene            complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ72_002581"
     CDS             complement(6249..6917)
                     /gene="basR"
                     /locus_tag="OQQ72_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BasR"
                     /protein_id="HCS2012256.1"
                     /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGH
                     YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP
                     FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR
                     LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVA
                     NEEN"
     gene            complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ72_002582"
     CDS             complement(6914..8557)
                     /gene="eptA"
                     /locus_tag="OQQ72_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase EptA"
                     /protein_id="HCS2012257.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVR
                     IGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTV
                     SCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACD
                     RVPHQNVTALNLPGQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTIGSHGPTYYNR
                     YPPQFRKFTPTCDTNEIQTCTKEQLVNTYDNTLVYVDYIVDKAINLLKEHQDKFTTSL
                     VYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQVDQNCLQKQAQ
                     TQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSK"
     gene            complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ72_002583"
     CDS             complement(8661..9998)
                     /gene="adiC"
                     /locus_tag="OQQ72_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HCS2012258.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTPGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ72_002584"
     CDS             complement(10135..10896)
                     /gene="adiY"
                     /locus_tag="OQQ72_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator AdiY"
                     /protein_id="HCS2012259.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ72_002585"
     CDS             complement(11221..13488)
                     /gene="adiA"
                     /locus_tag="OQQ72_002585"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCS2012260.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHAMCVKA"
     gene            complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ72_002586"
     CDS             complement(13687..14595)
                     /gene="melR"
                     /locus_tag="OQQ72_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HCS2012261.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            14878..16233
                     /gene="melA"
                     /locus_tag="OQQ72_002587"
     CDS             14878..16233
                     /gene="melA"
                     /locus_tag="OQQ72_002587"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCS2012262.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGESSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            16336..>16521
                     /locus_tag="OQQ72_002588"
     CDS             16336..>16521
                     /locus_tag="OQQ72_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2012263.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIM"
BASE COUNT         3988 a         4002 c         4346 g         4185 t
ORIGIN      
        1 tatttcttgc agtaattata aaagccgaaa acagaactca aaaacaatct ggctaaataa
       61 aagtaacaaa atttgcttta aggaagaatt ttctatgtac acacagaccc tgtatgagtt
      121 aagtcaggag gctgaacgcc tgttacagct ttctcgccaa cagttgcagt tactggaaaa
      181 aatgcctctc tctgtacccg gagacgatgc ggcacaactg gctttaccct ggagtcagcc
      241 taatatcgcc gaacgttacg cgatgctgaa taatgagttg cgtaaaattt cccgactgga
      301 aatggtgctg gcgattgtcg gtactatgaa agcagggaaa tcaaccacca ttaatgccat
      361 tgttggtacg gaggttctgc ctaatcgtaa tcgcccaatg actgcgctgc cgacgcttat
      421 tcgccatacg cccgggcaaa aggaaccggt actgcatttt tcacatgtcg cgccaatcga
      481 ttgtttaatt caacaattac aacagcgcct gcgtgattgc gatattaagc atctgaccga
      541 tgtgctggaa atagataaag atatgcgtgc gcttatgcag cggatcgaaa atggcgtcgc
      601 tttcgaaaaa tattatctgg gtgcccagcc tatttttcat tgtctgaaaa gtttgaatga
      661 tttagtgcga ctggcgaagg cgctggacgt cgattttcct ttttctgctt acgccgccat
      721 tgagcatatt cccgtgattg aagtggagtt tgtccatctg gcggggctgg aaagttatcc
      781 cggtcagttg acgttactgg atacccccgg gccaaatgaa gccgggcaac cgcatctgca
      841 aaaaatgctt aaccagcagc tggcacgcgc ctcggcggta ctggcggtgc tggattatac
      901 gcaactgaaa tcgatctccg atgaagaggt ccgtgaggcg attttggcgg tggggcaatc
      961 ggtgccgctg tatgtgctgg tcaataagtt cgatcaacag gatcgtaaca gtgacgacgc
     1021 cgaccaggtg cgggcactga tttccgggac gctgatgaaa ggctgtatta cgccacagca
     1081 gatatttccg gtgtcgtcga tgtggggcta cctggcgaat cgggcgcgct atgagttagc
     1141 caacaacggt aagttaccag cgccagagca acaacgctgg gtggaagatt ttgcccatgc
     1201 cgcgctcggc aggcgctggc gtcatgccga tctggcggac ctcgaacata ttcgtcatgc
     1261 tgccgatcag ttgtgggaag attcgctgtt cgcccagcca attcaggcgt tgcttcatgc
     1321 cgcttacgct aacgcctcat tgtatgctct gcgatctgct gcgcataaac tgttgaatta
     1381 cgcgcagcag gcgcgggaat acctggattt tcgtgcgcac gggttaaacg tcgcttgtga
     1441 acaattgcgg caaaatatcc atcaggtcga agaaagtttg cagctattgc aactcaatca
     1501 ggcgcaggtg agcggcgaga ttaaacatga aatcgagctg gccctgacct ccgccaacca
     1561 ctttctgcgt caacagcaag atgcgctgaa tgcgcagtta gccgccttgt ttcaggatga
     1621 ttcggagccg ttaagcgaga ttcgtacctg ctgtgagaca ctgttacaga cggcgcagaa
     1681 caccatcagt cgcgacttta cgctgcgttt tgccgagctt gaatccaccc tttgccgggt
     1741 gttaaccgat gttattcggc ccattgagca acaagtcaaa atggaattga gcgagtcagg
     1801 gtttcgtcct gggtttcatt ttcctgtttt tcacggagta gttccccacg tcaacactcg
     1861 ccagctgttc agtgaagtca tttcgcacca ggaggcaacg gacgagcaga gcacgcgttt
     1921 aggcgttgtg cgtgagactt tttcgcgctg gttgaatcag cccgactggg gacggggaaa
     1981 tgagaaatcc ccgacagaaa cggttgatta cagtgtgttg caacgagcat taagcgcaga
     2041 agtcgatctt tattgccaac aaatggctaa agttctggca gagcaggtcg atgaatctgt
     2101 tacggcaggc atgaatactt ttttcgctga gttcgcttca tgtttgacgg aattacagac
     2161 gcgtttacgc gaaagcctgg ctctgcgtca acaaaatgaa tcggtggtca ggctgatgca
     2221 gcagcaattg cagcagactg tgatgactca cggctggatt tacaccgacg cccagctgtt
     2281 acgcgatgat attcaaacac ttttcacggc agaacgatat tgaccaagac gttactggac
     2341 ggccccggtc gcgtgctgga gtcggtttat ccccgctttt tagtggatct ggcgcagggc
     2401 gatgatgccc gccttccaca agcccatcag cagcagtttc gtgaacgact gatgcaggaa
     2461 cttctttcgc gtgtgcagct tcagacatgg acgaacggcg gcatgttaaa tgcgccgctt
     2521 agcctgcgac tgacaatggt ggaaaaactg gcgtcgatgc tggatcccgg tcatctggcg
     2581 ctgacgcaga tcgcgcagca tctggcgctg ctgcaaaaaa tggatcaccg ccagcactct
     2641 gctttcccgg agctccccca gcaaattgcc gccttgtatg agtggttttc agcccgttgt
     2701 cgctggaagg aaaaggcgtt aacgcaacga ggccaggcct actggtgcag gcaggtgatc
     2761 agagcgagca aatttttacc cgctggcgtg ctggggcgta taacgcctgg tcgttgcctg
     2821 ggcgctgttt tatcgttctc gaagagttgc gttggggggc atttggcgat gcctgtcgtc
     2881 tgggaagccc gcaagcggtg gcgttgctgc tgggtgattt gcgcgtgaaa gcgacacaac
     2941 atctggcaga gagtatcaat gcggccccga ccacgcgtca ctattaccat cagtggtttg
     3001 cctcttcgac cgttccgacg ggcggggatc atgctgattt tttaagttgg ctgggaaagt
     3061 ggaccacggc agataaacaa cccgtttgct ggtcagtgac ccaacgttgg caaactgtcg
     3121 cgctggggat gccacgactc tgttcagcgc agcgtttggt gggggcaatg gtcgaggaaa
     3181 tcttctctgt aaatttggcg taaataatca gttacatcaa tgagtcctaa acgaaatcca
     3241 tgtgtgaagt tgatcacaaa tttaaatact ggtagggtaa aaaggtcatt aactgcccaa
     3301 ttcaggcgtc aactggtttg attgtacatt ccttaaccgg agggtgtaag caaacccgct
     3361 acgcttgtta cagagattgc atcctgcaat tcccgctccc cttttgcggc cgtcgcgctg
     3421 atttttctgg cgtttgcgga aatgggccaa ctctgcgagg aaagctatgc tgaaaaggaa
     3481 aaaagtaaaa ccgattaccc ttcgtgatgt caccattatt aatgacagta aactgcgtaa
     3541 agccattacc gcagcatcac tgggtaatgc aatggaatgg ttcgattttg gtgtttatgg
     3601 ttttgttgct tacgcattag gtaaagtttt tttcccgggg gctgacccca gcgtgcagat
     3661 ggttgctgca cttgccactt tctccgttcc ctttctgatt cgaccgcttg gcggactctt
     3721 ctttggtatg ttgggcgata aatatggtcg ccagaagatc ctcgctatca ctattgtgat
     3781 tatgtcgatc agtacgttct gtattggctt aataccgtcc tacgacacga ttggtatttg
     3841 ggcaccgatt ctgctgttga tctgtaagat ggcacaaggt ttctcggtcg gcggtgaata
     3901 taccggggcg tcgatatttg ttgcggaata ctcccctgac cgtaaacgtg gctttatggg
     3961 cagctggctg gacttcggtt ctattgccgg gtttgtgctg ggtgcgggcg tggtggtgtt
     4021 aatttcgacc attgtcggcg aagcgaactt cctcgactgg ggctggcgta ttccgttctt
     4081 tattgctctg ccgttaggga ttatcgggct ttacctgcgc catgcgctgg aagaaactcc
     4141 ggcgttccag cagcatgttg ataaactgga acagggcgac cgcgaaggtt tgcaggatgg
     4201 cccgaaagtc tcgtttaaag agattgccac taaatactgg cgcagcctgt tgacatgtat
     4261 tggtctggta attgccacca acgtgactta ctacatgttg ctgacctata tgccgagtta
     4321 tttgtcgcat aacctgcatt actccgaaga ccacggggtg ctgattatta tcgccattat
     4381 gatcggtatg ctgtttgtcc agccggtgat gggcttgctg agtgaccgtt ttggccgtcg
     4441 tccgtttgtg ctacttggta gtgttgccct gtttgtgttg gcgatcccgg cgtttattct
     4501 gattaacagt aacgtcatcg gcctgatttt tgccgggtta ctgatgctgg cggtgatcct
     4561 taactgcttt acgggcgtta tggcttctac cttgccagcg atgttcccga cgcatatccg
     4621 ttacagcgcg ctggcggcgg catttaatat ttcggtgctg gttgccggtc tgacgccaac
     4681 actggcggcc tggctggtcg aaagctcgca gaatctgatg atgcctgcct attacctgat
     4741 ggtagtggcg gtgattggtt taatcaccgg cgtaaccatg aaagagacgg caaatcgtcc
     4801 gttgaaaggt gcgacaccgg cggcgtcaga tatacaggaa gcgaaggaaa ttctcgtcga
     4861 gcattacgat aatatcgagc agaaaatcga taatattgac cacgagattg ccgatttgca
     4921 ggcgaaacgt acccgcctgg tgcagcaaca tccgcgaatt gatgaataag ctgaaacgga
     4981 tggcctgatg tgacgctgtc ttatcaggcc aattgaactc ttaaggttca cttaatctct
     5041 gacgcgcata ctctcctcca ggttaacgga ggagagtgca atgaaaaacc gtgtttatat
     5101 gaaagtttaa ctaccgtgtt cagcgtgctg gtggtcagca gctttcttta tatctggttt
     5161 gccacgttct gatctttctt cagccgtacc caggcccgcg tgccggaagt ctcttgccgg
     5221 ttttgcagga aaaactgccc gtgatgcaac tgtgtaatgc ggctgacaat acttaacccc
     5281 agaccaatcc cgccataacg gctgtccata cgtacaaacg ctttactcaa ctccccgcat
     5341 ttactctcat caatacctgg tccttcatct tcaactgcca tgaccgctcc gccatcttct
     5401 tgcagcttaa tcataatgtt gctgccttgc gggctgtaac gatgggcgtt ttctaccagg
     5461 tttcgcaata acatccgcag cagggttgca tcaccctgaa cggtgatgtc ggcggcgctc
     5521 tctggcaata gcagggtttg ctgtcgctgg tcgagcatgg tactgagttc gtcatacgag
     5581 gggagaatga catcttccag cagttttaca tgttgataat taccggaaga aaatgactgt
     5641 ccggcacgcg ccagttgcag cagctgggag acgctctcca tcatctgatc aagccgtgcc
     5701 actaacggtg ctacatcaat gtgatgcgtt ttcgccagca gttccagatg caaacgcacc
     5761 cccgccagtg gcgttcgcag ttcgtgcgcg acgtcagcgg taaacaacct ttcgttatcc
     5821 agcgtgctgg tcaggcgact gaccagatcg ttcaacgccg aaaccaccgc ttcgatttcg
     5881 agggtggcgc tgtgaatggc aatgggcgtt aagttgtcgg cagtgcgcgc ttccagctct
     5941 ttttgcagct ccgccagcgg gcgggtgatg cggcgtaccg cctgatagca gataaatagc
     6001 gtcaggctga ccataaagac gccggggaca atcaggctgg cgaccgcctc gcggatctca
     6061 cgcatgatgt ggcgatcgtt gttgcgattg tcgcgtagcg cctgctcaaa cagctgaatc
     6121 tgctcggtac tttcatgcca tagccagaag acgctgatca gctcaaacac caacaaaatg
     6181 gccccgatag tcaatatcag ccgttggcgc agcgatattg gtcggcgcag aaaacgcatc
     6241 agattcaatt agttttcctc attcgcgacc agcatatagc caaagccgcg cacggtgcgg
     6301 atacgggatt tgcccacttt gtcgcgcaga ttgtggatat gcacttccag ggtgttggtc
     6361 gagggttcat tgtcccagtt atagatgtcg ttgtagagaa tttcccgatg taccggactg
     6421 cctgctttga gcattaaccg tgacagcaga gcatattctt tgggcgtcag aatcaactct
     6481 tcaccgccca tccatacctg acggcgaccc atattcagcg tcagattgcc aacaatcagc
     6541 tcactttcgc cctgattatt atggcgtcgt agcagggcgc ggatacgggc gtgtaactct
     6601 tccagcgcaa aaggcttcac cagatagtca tcggcaccga catccagccc ggcgattttg
     6661 tcggtcagcg tatcgcgagc ggtgaggatc agtaccggca gggtatattt tttctgccgg
     6721 atacgggcga gaaaatgcag tccatcttcg tcgggtaacc ctaaatccag taccaccagg
     6781 ctgtaatgac cggcttcaag gctttgttcc gccatccgcg cggttgtcac gccatcgcac
     6841 gcgtagcctt cggtttgcgc cgccagaatc agtccctgca ataacagcgt atcgtcttca
     6901 acaatcagaa ttttcattta ctcactctcc tgcaagtttg cagaatatca tccgcagcct
     6961 ggtaatactt cgtctcaacg ccagttaatc ccaatagcgt ggagaataaa ttgtcttgtg
     7021 aatagtgttg cgtttgcgcc tgtttttgca ggcagttctg gtcaacctga taccgttttt
     7081 gataatcctc cgacagccac agcagcatcg gcacctgttt ttggctatcc ggggcgatgg
     7141 cataaggcag accgtgcaga tagatgccat tttcacctaa cgattcaccg tggtcagaaa
     7201 gataaaccag gctggtggta aatttatcct gatgttcttt cagcagatta atcgctttat
     7261 caacaatata gtcgacgtaa accagcgtgt tgtcgtaagt gttcaccagt tgctctttgg
     7321 tacaggtctg gatctcattg gtgtcgcagg ttggggtaaa tttcctgaac tgcggcggat
     7381 agcggttgta ataggtcgga ccgtggctgc cgatggtgtg taagacaatc acgccatcac
     7441 cctgcaggtt attgatgtac tcttccagcc cgtggaacag cacttcgtca tagcattcgc
     7501 cgttgatgca ctgaccaggc agattcagcg cggtgacgtt ctggtgaggc acgcggtcgc
     7561 aggcaccttt acagccgcca tcgttgtcat tccacagcac gttgatgccc gctcgctgaa
     7621 tgatatccag cacgccttcc tggtgctgtg ccagctcttc tttgtaatgc tcacgcggca
     7681 tatccgagaa catgcacggt actgaaactg ccgttgccgt gccgcaagat acggtattag
     7741 ggaaatagac cacgttatct ttcgccagcc gcgggttagt ttcacgcggg tagccgttga
     7801 gggagaagtt ctccgcccgc gaggtttcgc cgacaatcag gatggtcaaa tttttacgtt
     7861 tttcgttctg cattaacggg ttgcggtggg cgtcttcacc aattcgcacc agcggtagat
     7921 ttgccagtcg ctgatgggag taccatgacc agctggcaac aatgctgtta gaggggctta
     7981 aggatttcac cagctctttg ttattgcgga acaacgaggc gtagtcttta taaaacagtg
     8041 cggcgaccag caaaatcagt agtacagaaa ccagaatatt ggctccacgg aaaagaacac
     8101 tgcgcagacg cgaggtggca ggtttgattt ttatccagca ggcaatcagc gcagcaagca
     8161 cgccgctgaa tcccagcgtt aataacattt gcggtgtcat cagcgcataa ctttctgccg
     8221 gagtggtatc aataatattg gcaatcatcg agcggtcgat gacgatgccg taagtcatta
     8281 tgaaatattg tgcagccgcg ccaaccagaa taaacaggca ggccagtggt cgattaagcc
     8341 ataagaaaga gcttagtgtc aggacaatat taatcacgct gaaagcgacg accggcatcg
     8401 acaagaaaac cagtacgtta tgcagcgaat ccagcggcag cgcctgcaac acctgtttaa
     8461 aaaaggcaat attcaggcag atagagatat aaaaagcggc caacaatagc caggcgagta
     8521 aattcaaaga gggtcttttt agtaggcgct tcaacatcac ggtgtttcca tcgaacaaag
     8581 tgcgcatatg ctcgcaaagc aaaattaagc caaccttaag ttcttaaggt tggcttttat
     8641 gtttgctgga ttaaggggaa ttaatctttg cttattggtg catctaaggg atacgggttt
     8701 ttatgtagcc ggttgtaatt cagcgcatac atggcggtga tgaccatcag ggtgacaaat
     8761 gaccacataa cctctttcgc tccggacccc accacggccc agatgcagta gaggaaggca
     8821 atggtagtaa ctgccagata tgccgggcgt gctttaccaa agtgaccgtg tccgagcagc
     8881 agtaacgccg cacaggtgta aagatatggc accagtgtaa agatgaccga gacggaagaa
     8941 accagaccga actctttggt cgcgtttggt gaaatgctgc tgagctggaa gatggtcatc
     9001 aaaataccga cgataatcag ccccgccact ggcgtacccg ctttatttac acgggcaaaa
     9061 atcggtggga acagtccgtc atcggcagcg gctttcgccg tttgacccgc cagcaacgtc
     9121 cagccgccca gtgaacctaa gcaacccgca gctgcgcaga aggaaacaat ggccccgggg
     9181 gtgtcaccca acgccatccg tgcggcatca ccgaatggcg aagcagaaac gcgcagtgcg
     9241 gcattaggga tcatccccat aatcgcggtg gtagaaagta catagcaaac ggcggcaatc
     9301 aataccccac caatggtggc gatagggaca ttgcgtttcg ggtttttcac cacacctgcg
     9361 gcaacggagg cactttccac accgatgaac gaccacagcg taacgttaag ggtactttga
     9421 attgcaccga aggtacccag gccgctgacg ttccatgccg ccatataggt ttcaccacgg
     9481 aaccagaacc agccaaatac ggcaatcccg acgatgggga tcagcgccag cacggtggca
     9541 actgcctgca cacgggtgat cattttcgga ccaacaatgt tcagcaggac gaagatccac
     9601 agcaccacga cgcaggtgat ggttaatacc aatggatctt tcagaatcgg gaagaagtaa
     9661 cttaaatatc ctacgccaat gaccaccatg gcgatattgc cgatccagca ggccagccag
     9721 tagaggacgt tggtttgata accgagaaac gggccaaagc agcggcgggc gtaagcgtaa
     9781 gaaccaccag gacttgggtc gaggaacgac attttggcgt ataccatcga gagccccagt
     9841 gcaccgataa tcgtcaccaa ccatccataa atggcaatcc cgccagtgga ggccaggttt
     9901 gcaggtaaca gaaaaacacc tgaccccata atattccccg acaccatcag ggtgacgggg
     9961 attaagccca ctttgtgagc atcagcatcc gaagacataa ttaaactcct gcgaaggcga
    10021 gcttcgtgac aataaattac gtcatatcat acgcctgcat tcgatagttg aattattatc
    10081 gaccgggtta tcgctgatgc cgttattaat atagctcttc gttaaggtta aaaatcaggc
    10141 gacagtgcgt tctctgtgct gactaacata atgcagcggc gtcataccgt agaagtcttt
    10201 aaagacagaa ataaagtacg acgtactgtt gtagccgcag gactgtgata cctgagagat
    10261 atttttaccg tccatcatta attcatttac ggcataacgc atgcggcagg tggtgattat
    10321 ttggctataa ctggtgtttt cgcttttcag ctttttcttt aacagacttg ggctaagaca
    10381 taaacaactg gctaccatac taagattcca gtctttgtga atatcgcttt caataatttg
    10441 ataaacgctg tcacttacac aattacgtaa catatacatc attaatgaaa ggaatttttt
    10501 actgtcgaga aaacgggata gcaccgtgaa taataatgcg cgtgttcgtt ccttttctga
    10561 ctcagtttct gcgggcatca tgctgtgttg cgcggcaacg cgaaagacgt ctggcgtcag
    10621 gcatggcagg gtgagtatgg gcgtagcgct acgttgccat actggtattt gcgagagatc
    10681 tttattcaga aaccggaggt aatctttgat gatgtcgtga ctaatatgag caaccaaagt
    10741 gttgttaaga gaggagacgt cgataatatt attttcacaa tttaataacg ccatatggtt
    10801 agctttaagg ctaataggtt ctttcccatt cacccttatc cagacatctt tttcagtcaa
    10861 taaaacaata caaggttggt cgctgcaaat cctcatacat gtactcctga gtgcgaataa
    10921 aagaccagtt ctcgctaaag caaagcgata ccgggaaatg gttatataat tgtatgacga
    10981 atataaacat gcataaaaat aacgagtttt actaatatta caaattttta tagtaatttc
    11041 tcatgtacat atttttttac agggtaaata acaggcaaaa aaaagcgcgg ggtggggccg
    11101 cgcaaaaagt atgacatttt tgtttgcagc aatttttatg aaaacgttgc catactcaaa
    11161 aggcctaagg ccaggcggcg taatgttatt taaacaatta cgccttcagc ggaatagtgg
    11221 ttacgctttc acacacatag cgtggtaaat accgtcaata atttcagtcc cttcagtttc
    11281 gtgttcaaat ccagggaaat ggtggtccca ggattgcagc gagcgtaaat aacttacttg
    11341 cggactgttt ttatcgccga agttttcacc agacagcagc atcgggattc ctggcggata
    11401 tgggataact gagtttgccg cgatgcgtcc tggcagattt tcaatggata ccagttcgac
    11461 attgttgtcg acaatcgcgt tgtacgcttc acgcggggtg atttccgcca ccggcaggcc
    11521 ggaataggct tcgttcaacc gtgcgccagg gttgttttct ttcagccagg caaacatggt
    11581 gtcacccaga tcgtgaatcc ccatgttcgc gtaagtgtca ggatattgtt caacaagttc
    11641 cggcatcacc tgcgccagcg gtgtgttggc gtcatagtgg cgtttgaagg agcaaagggt
    11701 gttaaccaga gtcccccatt tcccacgggt tacgcccata gagaacagga acataatttg
    11761 gaagtcagtg gtgcgggtag gcacaatgcc gtggcgacca agccaggcag tgaccagcgc
    11821 cgccggaaca ccggtttctt ccagttcacc atcttcaccc attcccggag caaggatgct
    11881 gactttaatc gggtcgagca tactccagtt atccggaata tctttgaagc cgtgccagct
    11941 ttcgcccgga tgcattaccc agtagtcctg aacggtggtc agcagtttgg ttggtgcgtc
    12001 agcaaagtca taggttttgc cggtttgtgg gtcggtgacg acttctttgt tccacggttt
    12061 gaagaaccag ctaccgtcag cggtgaactc tttatacagc cgcgccatcg cctgacggaa
    12121 atcaaccgct tcgtcgatca cttcctgcgt cagtgacagg ccgctgttgc cgtccatcat
    12181 cgacaccgcc acgtcgttgg atgcgcagat ggcatacagc ggggaggtgg tggcatgcat
    12241 catgtaggcc tggttgaagc gggagaagtt aatcgcccca cgaccttcac gtacatgaat
    12301 ataagaagcc tgtgaaagcg cattcagcag tttgtgggtg gagtgggtgg cgaaaacggt
    12361 aggaccgttg tgatcgccag gttcgccgcg catggcatag tgatcggcat agatcgggtt
    12421 gaaacgtgca tagccgtacc aggcttcgtc aaagtgcaga cgatcggagg ttttttccag
    12481 cagatcctgc gcttctttag cgttataaca cacgccgtca taggtgcagt tggtcaccac
    12541 gcagtaagac ggtttttgcc cggctttgtc tttagtcagc gggctttcac tgattttctt
    12601 ctgcaaggtt tcaggttgca tttcctgcgg atagattggc ccgataatgc cgtagcggtt
    12661 gcggcttggc accatgtaga ccggtttcgc gcctgtcagc atcaagcctt gttcgatgga
    12721 tttatggcag ttacggtcaa cgaccacgac atcgttatcg gtcatgcaag cctgcatgat
    12781 ggtgcggtta gagccggaag taccgacgac taccgaccag gagcgatcgg caccaaatac
    12841 gcgtgcggca tatttttcgc tttcgccaaa tgcgccagta tggtcaagca aagaaccgag
    12901 ggaagttcgt tcgatgccca tatctgtgcg gaacagattt tctccatagt agtcatggta
    12961 gaaacgtccg gcgggtgttt tggtaaaacc aacgccgccc tggtggcctg gcgctgccca
    13021 ggaatattca tggatgtcgc tatacttcat cagcgcgctg aacagtggcg gcaacagctg
    13081 ctggcggtag cgggtcatcg cggcaacggc gcgtccggcg ataaagtcgg tggtatcttc
    13141 cagaatccag gcgaattcat cgacaagctc cagcaggtcg cgatccattg cggcgagggc
    13201 tttttcccga tcgcccaaca ggaagaccgg cacgttttgt tggcgctcat gaagcttacc
    13261 gatcaattgt ctgacgtttt gatgttcgtc cggatgttcc atttgatagc tgaacatcag
    13321 gcagtcaatg gcttcgtttg aagagagaat ggcaaaacca tcatcaaagg aggtggattt
    13381 aatcacggta acattttgct ggcttaaagc atctgccaga cgctcaacgg cgttaccgac
    13441 ccaggtgtct tgatggagaa actcgctttc aacaattaat actttcatca ttgcttaccc
    13501 ggttatgaag gaatcttcgt tgcgggcaag tatcttccgg ccttttcggg ctgtaaagcg
    13561 cgtgaaaaac aaacattttt gaaatattta tttttataaa caatgcgtta tgtgattatt
    13621 ttaaattatt ttcactgctt gttatcgacg gctaaactat ttttttggct gatactgata
    13681 tcgtctttag ccgggaaacg tctggcggcg ctgttggcta agtttgcggt attgttgcgg
    13741 cgacatgccg acatatttgc cgaacgtgct gtaaaaacga ctacttgaac gaaagcctgc
    13801 cgtcagggca atatcgagaa tacttttatc ggtatcgctc agtaacgcgc gaacgtggtt
    13861 gatgcgcatc gcggtaatgt actgtttcat cgtcaattgc atgacccgct ggaatatccc
    13921 cattgcatag ttggcgttaa gtttgacgtg ctcagccaca tcgttgatgg tcagcgcctg
    13981 atcatagttt tcggcaataa agcccagcat ctggctaaca taaaattgcg catggcgcga
    14041 gacgctgttt ttgtgtgtgc gcgaggtttt attgaccaga atcggttccc agccagagag
    14101 gctaaatcgc ttgagcatca ggccaatttc atcaatggcg agctggcgaa tttgctcgtt
    14161 cggactgttt aattcctgct gccagcggcg cacttcaaac gggctaagtt gctgtgtggc
    14221 cagtgatttg atcatcatgc cgtgagtgac gtggttaatc aggtctttat ccagcggcca
    14281 ggagagaaac agatgcatcg gcagattaaa aatcgccatg ctctgacagg ttccggtatc
    14341 tgttagttgg tgcggtgtac aggcccagaa cagcgtgata tgaccctgat tgatattcac
    14401 tttttcattg ttaatcaggt attccacatc gccatcgaaa ggcacattca cttcgacctg
    14461 accatgccag tggctggtgg gcatgatatg cggtgcgcga aactcaatct ccatccgctg
    14521 gtattccgaa tacagcgaca gcgggctgcg ggtctgtttt tcgtcgctgc tgcacataaa
    14581 cgtatctgta ttcatggatg gctctctttc ctggaatatc agaattatgg caggagtgag
    14641 ggaggatgac tgcgagtggg agcacggttt tcaccctctt cccagagagg cgaggggagc
    14701 gtccgagcat catgaggccg aaaactctgc ttttcaggta acttattacc ataaactcag
    14761 atttactgct gcttcacgca ggatctgagt ttatgggaat gctcaacctg gaagccggag
    14821 gttttctgca gattcgcctg ccatgatgaa gttattcaag caagccagga gatctgcatg
    14881 atgactgcac ccaaaattac atttatcggc gctggttcga cgattttcgt taaaaatatt
    14941 cttggtgatg tgttccatcg agaggcgctg aaaacggcgc atattgccct gatggacatt
    15001 gatcccaccc gcctggaaga gtcgcatatt gtggtgcgta agctgatgga ttcagcaggg
    15061 gccagcggca aaatcacctg ccacacccaa cagaaagaag ccttacagga tgccgatttt
    15121 gtcgtggtgg catttcagat tggcggttat gaaccttgca cggtgactga tttcgaggtc
    15181 tgtaagcggc atggtctgga acaaaccatt gccgatacgt tggggccggg cggtattatg
    15241 cgcgcgctac gtaccattcc gcatctgtgg caaatttgcg aggacatgac ggaagtctgc
    15301 cccgatgcca cattgctcaa ctacgttaac ccaatggcga tgaatacctg ggcgatgtat
    15361 gcccgctatc cgcatatcaa acaggtaggg ctgtgccatt cggtgcaggg aacggcggaa
    15421 gagctggcgc gtgacctcaa tatcgatccg tccacgctgc gttaccgttg cgctggtatc
    15481 aaccatatgg cgttttacct ggaactggag cgtaaaaccg ccgacggcag ttacgtgaat
    15541 ctctacccgg aactgctggc ggcttatgaa gcagggcagg caccgaagcc acatattcat
    15601 ggtaatactc gctgccagaa tattgtgcgc tacgaaatgt tcaaaaagct gggctacttc
    15661 gtcacggaat cgtcagaaca ttttgccgaa tatacgccgt ggtttattaa gccaggtcgt
    15721 gaggatttga ttgagcgtta taaagtaccg ctggatgagt acccgaaacg ctgcgtcgag
    15781 cagctggcga actggcataa agagctggag gagtataaaa acgcctcccg gattgatatt
    15841 aaaccgtcac gggaatatgc cagcacaatc atgaacgcta tctggactgg cgagtcgagt
    15901 gtgatttacg gcaacgtccg taacgatggt ttgattgata acctgccaca aggatgttgc
    15961 gtggaagtag cctgtctggt tgatgctaat ggcattcagc cgaccaaagt cggtacgcta
    16021 ccttcgcatc tggccgccct gatgcaaacc aacatcaacg tacagacgct gctgaccgaa
    16081 gctattctta cggaaaatcg cgaccgtgtt taccacgccg cgatgatgga cccgcatact
    16141 gccgccgtgc tgggcattga cgaaatatat gctcttgttg acgacctgat tgccgcccac
    16201 ggcgactggc tgccaggctg gttgcaccgt taaaacgcga ctaaacgcta ctgcgccggg
    16261 ggatttattc cggcgcacac ctctgacgat accaataaca gaaggcgggc gttggtaaca
    16321 gcgacccgat accctatgag catttcaatg actacaaaac tcagttatgg atttggagcg
    16381 ttcgggaagg attttgcgat cggcattgtg tatatgtacc tcatgtatta ctacaccgat
    16441 gtcgttgggc tgtctgtggg tttggtcggt actttgtttc tggtggcgag gatctgggat
    16501 gctattaacg atccgattat g
//
LOCUS       DAJVUY010000090        16477 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.090, whole genome shotgun sequence.
ACCESSION   DAJVUY010000090 DAJVUY010000000
VERSION     DAJVUY010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.090"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(122..1405)
                     /gene="gltA"
                     /locus_tag="OQQ72_002589"
     CDS             complement(122..1405)
                     /gene="gltA"
                     /locus_tag="OQQ72_002589"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCS2012264.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1611..1718)
                     /locus_tag="OQQ72_002590"
     CDS             complement(1611..1718)
                     /locus_tag="OQQ72_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012265.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2099..2503
                     /gene="sdhC"
                     /locus_tag="OQQ72_002591"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2099..2503
                     /gene="sdhC"
                     /locus_tag="OQQ72_002591"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS2012266.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2497..2844
                     /gene="sdhD"
                     /locus_tag="OQQ72_002592"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2497..2844
                     /gene="sdhD"
                     /locus_tag="OQQ72_002592"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HCS2012267.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2844..4610
                     /gene="sdhA"
                     /locus_tag="OQQ72_002593"
     CDS             2844..4610
                     /gene="sdhA"
                     /locus_tag="OQQ72_002593"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HCS2012268.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4626..5342
                     /gene="sdhB"
                     /locus_tag="OQQ72_002594"
     CDS             4626..5342
                     /gene="sdhB"
                     /locus_tag="OQQ72_002594"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit
                     SdhB"
                     /protein_id="HCS2012269.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5643..8444
                     /gene="sucA"
                     /locus_tag="OQQ72_002595"
     CDS             5643..8444
                     /gene="sucA"
                     /locus_tag="OQQ72_002595"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCS2012270.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYSDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8459..9676
                     /gene="odhB"
                     /locus_tag="OQQ72_002596"
     CDS             8459..9676
                     /gene="odhB"
                     /locus_tag="OQQ72_002596"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCS2012271.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLITIK
                     ELLEDPTRLLLDV"
     gene            9952..11118
                     /gene="sucC"
                     /locus_tag="OQQ72_002597"
     CDS             9952..11118
                     /gene="sucC"
                     /locus_tag="OQQ72_002597"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HCS2012272.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11118..11987
                     /gene="sucD"
                     /locus_tag="OQQ72_002598"
     CDS             11118..11987
                     /gene="sucD"
                     /locus_tag="OQQ72_002598"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCS2012273.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12091..12813)
                     /gene="mngR"
                     /locus_tag="OQQ72_002599"
     CDS             complement(12091..12813)
                     /gene="mngR"
                     /locus_tag="OQQ72_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HCS2012274.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12982..14898
                     /gene="mngA"
                     /locus_tag="OQQ72_002600"
     CDS             12982..14898
                     /gene="mngA"
                     /locus_tag="OQQ72_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HCS2012275.1"
                     /translation="MNLTTLTHRDALRLNARFTSREEAIHALTQRLAALGKISSTEQF
                     LEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVV
                     LLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
                     SNAPTIVCVPACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNS
                     ATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDT
                     QPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMY
                     RKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAG
                     YLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNG
                     LSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMVNGVYGPYAIFASVKMVSAFT
                     VTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTG
                     AIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRRH
                     AVKHGNYLTDGVMP"
     gene            14916..>16477
                     /locus_tag="OQQ72_002601"
     CDS             14916..>16477
                     /locus_tag="OQQ72_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS2012276.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIV
                     RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDK
                     TEFLWQSSDGSEVTAQVLPLGYAIGKYLPTDENGLRKRLDSYFDVLEKASVTKEILLP
                     NGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRESLATLKGEFIDGK
                     YMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILK
                     NHAHDSIGCCCSDKVHREIVARFELAEDMADNLLRFYMRKIADNMPQSDADKLVLFNL
                     MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF
                     MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLV
                     DKDSGVRYDRVL"
BASE COUNT         3956 a         4135 c         4487 g         3899 t
ORIGIN      
        1 ttagaatata tgaatgtccg atagtggatt ttatttttac aattttttgt gtttaggcat
       61 ataaaaatta acccgccatt tgaacggcgg gttaaaatat ttacaactta gcaatcaacc
      121 attaacgctt gatatcgctt ttaaagtcgc gtttttcata tcctgtatac agctgacgcg
      181 gacgggcaat cttcataccg tcactgtgca tttcgctcca gtgggcgatc cagccaacgg
      241 tacgtgccat tgcgaaaatg acggtgaaca tggaagacgg aatacccatc gctttcagga
      301 tgataccaga gtagaaatcg acgttcgggt acagtttctt ctcgataaag tacgggtcgt
      361 tcagcgcgat gttttccagc tccatagcca cttccagcag gtcatctttg gtgcccagct
      421 ctttcagaac ttcatggcag gtttcacgca ttacggtggc gcgcgggtcg taatttttgt
      481 acacgcggtg accgaagccc atcaggcgga aagaatcatt tttatctttc gcacgacgaa
      541 caaattccgg aatgtgttta acggagctaa tttcttccag cattttcagc gccgcttcgt
      601 tagcaccacc gtgcgcaggt ccccacagtg aagcaatacc tgctgcgata caggcaaacg
      661 ggttcgcacc cgaagagcca gcggtacgca cggtggaggt agaggcgttc tgttcatggt
      721 cagcgtgcag gatcagaata cggtccatag cacgttccag aatcggatta acttcatacg
      781 gttcgcacgg cgtggagaac atcatattca ggaagttacc ggcataggag agatcgttgc
      841 gcggataaac aaatggctga ccaatggaat acttgtaaca catcgcggcc atggtcggca
      901 ttttcgacag caggcggaac gcggcaattt cacgatgacg aggattgtta acatccagcg
      961 agtcgtgata gaacgccgcc agcgcgccgg taataccaca catgactgcc attggatgtg
     1021 agtcgcgacg gaaagcgtgg aacagacggg taatctgctc gtggatcatg gtatgacggg
     1081 tcaccgtagt tttaaattcg tcatactgtt cctgagtcgg tttttcacca ttcagcagga
     1141 tgtaacaaac ttccaggtag ttagaatcgg tcgccagctg atcgatcggg aaaccgcggt
     1201 gcagcaaaat accttcatca ccatcaataa aagtaatttt agattcgcag gatgcggttg
     1261 aagtgaagcc tgggtcaaag gtgaacacac cttttgaacc gagagtacgg atatcaataa
     1321 catcttgacc cagcgtgcct ttcagcacat ccagttcaac agctgtgtcc ccgttgaggg
     1381 tgagttttgc ttttgtatca gccatttaag gtctccttag cgccttattg cgtaagactg
     1441 ccggaactta aatttgcctt cgcacatcaa cctggcttta cccgtttgtt atttggctcg
     1501 ccgctctgtg aaagagggga aaacctgggt acagagctct gggcgcttgc aggtaaagga
     1561 tccattgatg acgaataaat ggcgaatcaa gtacttagca atccgaatta ttaaacttgt
     1621 ctaccactaa taactgtccc gaatgaattg gtcaatactt ccacactgtt acataagtta
     1681 atcttaggtg aaataccgac ttcataactt ttacgcatta tatgcttttc ctggtaatgt
     1741 ttgtaacaac tttgttgagt gattgtcaaa ttagatgatt aaaaattaaa taaatgttgt
     1801 tgtcgtgacc tggatcactg ttcaggataa aacccgacaa actatatgta ggttaattgt
     1861 aatgattttg tgaacagcct atactgccgc caggtctccg gaacaccctg caatcccgag
     1921 ccacccagcg ttgtaacgtg tcgttttcgc atctggaagc agtgttttgc atgacgcgca
     1981 gttatagaaa ggacgctgtc tgacccgcaa gcagaccgga ggaaggaaat cccgacgtct
     2041 ccaggtaaca gaaagttaac ctctgtgccc gtagtcccca gggaataata agaacagcat
     2101 gtgggcgtta ttcatgataa gaaatgtgaa aaaacaaaga cctgttaatc tggacctaca
     2161 gaccatccgg ttccccatca cggcgatagc gtccattctc catcgcgttt ccggtgtgat
     2221 cacctttgtt gcagtgggca tcctgctgtg gcttctgggt accagcctct cttcccctga
     2281 aggtttcgag caagcttccg cgattatggg cagcttcttc gtcaaattta tcatgtgggg
     2341 catccttacc gctctggcgt atcacgtcgt cgtaggtatt cgccacatga tgatggattt
     2401 tggctatctg gaagaaacat tcgaagcggg taaacgctcc gccaaaatct cctttgttat
     2461 tactgtcgtg ctttcacttc tcgcaggagt cctcgtatgg taagcaacgc ctccgcatta
     2521 ggacgcaatg gcgtacatga tttcatcctc gttcgcgcta ccgctatcgt cctgacgctc
     2581 tacatcattt atatggtcgg ttttttcgcc accagtggcg aactgacata tgaagtctgg
     2641 atcggtttct tcgcctctgc gttcaccaaa gtgttcaccc tgctggcgct gttttctatc
     2701 ttgattcatg cctggatcgg catgtggcag gtgttgaccg actacgttaa accgctggca
     2761 ttgcgcctga tgctgcaact ggtgattgtc gttgcactgg tggtttacgt gatttatgga
     2821 ttcgttgtgg tgtggggtgt gtgatgaaat tgccagtcag agaatttgat gcagttgtga
     2881 ttggtgccgg tggcgcaggt atgcgcgcgg cgctgcaaat ttcccagagc ggccagacct
     2941 gtgcgctgct ctctaaagtc ttcccgaccc gttcccatac cgtttctgcg caaggcggca
     3001 ttaccgttgc gctgggtaat acccatgaag ataactggga atggcatatg tacgacaccg
     3061 taaaagggtc ggactatatc ggtgaccagg acgcgattga atatatgtgt aaaaccgggc
     3121 cggaagcgat tctggaactc gaacacatgg gcctgccgtt ctcgcgtctt gatgatggtc
     3181 gtatctatca acgtccgttt ggcggtcagt cgaaaaactt cggcggcgag caggcggcac
     3241 gcactgcggc ggcggctgac cgtaccggtc acgcactgtt gcacacgctt tatcagcaga
     3301 acctgaaaaa ccacaccacc attttctccg agtggtatgc gctggatctg gtgaagaacc
     3361 aggatggcgc ggtggtgggt tgtactgcac tgtgcatcga aactggtgaa gtggtttatt
     3421 tcaaagcccg cgctaccgtg ctggcgactg gcggggcagg gcgtatttat cagtccacca
     3481 ctaacgccca cattaacact ggcgacggcg tcggcatggc tatccgcgca ggcgtaccgg
     3541 tgcaggatat ggaaatgtgg cagttccacc cgaccggtat tgccggtgcg ggcgtactgg
     3601 tcaccgaagg ttgccgtggt gaaggcggtt atctgctgaa caaacatggc gaacgcttta
     3661 tggagcgtta tgcgccgaac gccaaagacc tggcgggccg tgatgtggtg gcgcgttcca
     3721 tcatgatcga aatccgtgaa ggtcgcggct gtgatggtcc gtgggggcca cacgcgaaac
     3781 tgaaactcga ccacctgggt aaagaagttc tcgaatcccg tctgccgggc atcctggaac
     3841 tctcccgtac cttcgctcac gtcgatccgg tgaaagagcc gatcccggtt atcccaacct
     3901 gtcattacat gatgggcggt attccgacca aagtgaccgg tcaggcgctg actgtgaatg
     3961 agaaaggcga agatgtggtt gttccgggac tgtttgccgt tggtgaaatc gcttgtgtat
     4021 cggtacacgg cgctaaccgt ctgggcggca actcgctgct ggacctggtg gtctttggtc
     4081 gtgcggcagg tctgcatctg caagagtcta tcgccgagca gggcgcattg cgcgatgcca
     4141 gcgagtctga tgttgaagca tctctggatc gtctgaaccg ctggaacaat aatcgtaacg
     4201 gtgaagatcc ggtggcgatt cgtaaagcgc tgcaagaatg tatgcagcat aacttctcgg
     4261 tcttccgtga aggtgatgcg atggcgaaag ggcttgagca gttgaaagtt atccgcgagc
     4321 gtctgaaaaa tgcccgtctg gatgacactt ccagcgagtt caacacccag cgcgttgagt
     4381 gcctggaact ggataacctg atggaaacgg cgtatgcaac ggctgtttct gccaacttcc
     4441 gtaccgaaag ccgtggcgcg catagccgct tcgacttccc ggatcgtgat gatgaaaact
     4501 ggctgtgcca ctccctgtat ctgccagagt cggaatccat gacgcgccga agcgtcaaca
     4561 tggaaccgaa actgcgcccg gcattcccgc cgaagattcg tacttactaa tgcggagaca
     4621 ggaaaatgag actcgagttt tcaatttatc gctataaccc ggatgttgat gatgctccgc
     4681 gtatgcagga ttacaccctg gaagcggaag aaggtcgcga catgatgctg ctggatgcgc
     4741 ttatccagct gaaagagaaa gatcccagcc tgtcgttccg ccgctcctgt cgtgaaggtg
     4801 tgtgcggttc cgacggtctg aacatgaacg gcaagaatgg tctggcctgt attaccccga
     4861 tttcggcact caaccagccg ggcaagaaga ttgtgattcg cccgctgcca ggtttaccgg
     4921 tgatccgcga tttggtggta gacatgggac aattctatgc gcaatatgag aaaattaagc
     4981 cttacctgtt gaataatgga caaaatccgc cagctcgcga gcatttacag atgccagagc
     5041 agcgcgaaaa actcgacggg ctgtatgaat gtattctctg cgcatgttgt tcaacctctt
     5101 gtccgtcttt ctggtggaat cccgataagt ttatcggccc ggcaggcttg ttagcggcat
     5161 atcgtttcct gatcgatagc cgtgataccg agactgacag ccgcctcgac ggtttgagcg
     5221 atgcattcag cgtattccgc tgtcacagca tcatgaactg cgtcagtgta tgtccgaagg
     5281 ggctgaaccc gacgcgcgcc atcggccata tcaagtcgat gttgttgcaa cgtaatgcgt
     5341 aaaccgtagg cctgataaga cgcgcaagcg tcgcatcagg caaccagtgc cggatgcggc
     5401 gtgaacgcct tatccggcct acaagtcatt acccgtaggc ctgataagcg cagcgcatca
     5461 ggcgtaacaa agaaatgcag gaaatcttta aaaactgccc ctgacactaa gacagttttt
     5521 aaaggttcct tcgcgagcca ctacgtagac aagagctcgc aagtgaaccc cggcacgcac
     5581 atcactgtgc gtggtagtat ccacggcgaa gtaagcataa aaaagatgct taagggatca
     5641 cgatgcagaa cagcgctttg aaagcctggt tggactcttc ttacctctct ggcgcaaacc
     5701 agagctggat agaacagctc tatgaagact tcttaaccga tcctgactcg gttgacgcta
     5761 actggcgttc gacgttccag cagttacctg gtacgggagt caaaccggat caattccact
     5821 ctcaaacgcg tgaatatttc cgccgcctgg cgaaagacgc ttcacgttac tcttcaacga
     5881 tctccgaccc tgacaccaat gtgaagcagg ttaaagtcct gcagctcatt aacgcatacc
     5941 gcttccgtgg tcaccagcat gcgaatctcg atccgctggg actgtggcag caagataaag
     6001 tggccgatct ggatccgtct ttccacgatc tgaccgaagc agacttccag gaaaccttca
     6061 acgtcggttc atttgccagc ggcaaagaaa ccatgaaact cggcgagctg ctggaagccc
     6121 tcaagcaaac ctactgcggc ccgattggtg ccgagtatat gcacatcacc agcaccgaag
     6181 aaaaacgctg gatccaacag cgtatcgagt ctggtcgcgc gactttcaat agcgaagaga
     6241 aaaaacgctt cttaagcgaa ctgaccgccg ctgaaggcct tgaacgttac ctcggcgcaa
     6301 aattccctgg cgcaaaacgc ttctcgctgg aaggcggtga cgcgttaatc ccgatgctta
     6361 aagagatgat ccgccacgct ggcaacagcg gcacccgcga agtggttctc gggatggcgc
     6421 accgtggtcg tctgaacgtg ctggtgaacg tgctgggtaa aaaaccgcaa gacttgttcg
     6481 acgagttcgc cggtaaacat aaagaacacc tcggcacggg tgacgtgaaa taccacatgg
     6541 gcttctcgtc tgacttccag accgatggcg gcctggtgca cctggcgctg gcgtttaacc
     6601 cgtctcacct tgagattgta agcccggtag ttatcggttc tgttcgtgcc cgtctggaca
     6661 gacttgatga gccgagcagc aacaaagtgc tgccaatcac catccacggt gacgccgcag
     6721 tgaccgggca gggcgtggtt caggaaaccc tgaacatgtc gaaagcgcgt ggttatgaag
     6781 ttggcggtac ggtacgtatc gttatcaaca accaggttgg tttcaccacc tctaatccgc
     6841 tggatgcccg ttctacgccg tactgtactg atatcggtaa gatggttcag gccccgattt
     6901 tccacgttaa cgcggacgat ccggaagccg ttgcctttgt gacccgtctg gcgctcgatt
     6961 tccgtaacac ctttaaacgt gatgtcttca tcgacctggt gtgctaccgc cgtcacggcc
     7021 acaacgaagc cgacgagccg agcgcaaccc agccgctgat gtatcagaaa atcaaaaaac
     7081 atccgacacc gcgcaaaatc tacgctgaca agctggagca ggaaaaagtg gcgacgctgg
     7141 aagatgccac cgagatggtt aacctgtacc gcgatgcgct ggatgctggc gattgcgtag
     7201 tggcagagtg gcgtccgatg aacatgcact ctttcacctg gtcgccgtac ctcaaccacg
     7261 aatgggacga agagtacccg aacaaagttg agatgaagcg cctgcaggag ctggcgaaac
     7321 gcatcagcac ggtgccggaa gcagttgaaa tgcagtctcg cgttgccaag atttatagcg
     7381 atcgccaggc gatggctgcc ggtgagaaac tgttcgactg gggcggtgcg gaaaacctcg
     7441 cttacgccac gctggttgac gaaggcattc cggttcgcct gtcgggtgaa gactccggtc
     7501 gcggtacctt cttccaccgc cacgcggtga tccacaacca gtctaacggt tccacttaca
     7561 cgccgctgca acacatccat aacgggcagg gcgcgttccg cgtctgggac tccgtactgt
     7621 ctgaagaagc agtgctggcg tttgaatacg gttatgccac cgcagaacca cgcactctga
     7681 ccatctggga agcgcagttc ggtgacttcg ctaacggtgc tcaggtggtt atcgaccagt
     7741 tcatctcctc tggcgaacag aaatggggcc ggatgtgtgg tctggtgatg ttgctgccgc
     7801 acggttatga agggcagggg ccggagcact cctccgcgcg tctggaacgt tatctgcaac
     7861 tttgtgctga gcaaaacatg caggtgtgcg taccgtctac cccggcacag gtttaccaca
     7921 tgctgcgtcg tcaggcgctg cgcgggatgc gtcgtccgct ggtcgtgatg tcgccgaaat
     7981 ccctgctgcg tcatccgctg gcggtttcca gcctcgaaga actggcgaac ggcaccttcc
     8041 tgccagccat cggtgaaatc gacgagcttg atccgaaggg cgtgaagcgc gtagtgatgt
     8101 gttctggtaa ggtttattac gacctgctgg aacagcgtcg taagaacaat caacacgatg
     8161 tcgccattgt gcgtatcgag caactctacc cgttcccgca taaagcgatg caggaagtgt
     8221 tgcagcagtt tgctcacgtc aaggattttg tctggtgcca ggaagagccg ctcaaccagg
     8281 gcgcatggta ctgcagccag catcatttcc gtgaagtgat tccgtttggg gcttctctgc
     8341 gttatgcagg ccgcccggcc tccgcctctc cggcggtagg gtatatgtcc gttcaccaga
     8401 aacagcaaca agatctggtt aatgacgcgc tgaacgtcga ataaataaag gatacacaat
     8461 gagtagcgta gatattctgg tccctgacct gcctgaatcc gtagccgatg ccaccgtcgc
     8521 aacctggcat aaaaaacccg gcgacgcagt cgtacgtgat gaagtgctgg tagaaatcga
     8581 aactgacaaa gtggtactgg aagtaccggc atcagcagac ggcattctgg atgcggttct
     8641 ggaagatgaa ggtacaaccg taacgtctcg tcagatcctt ggtcgcctgc gtgaaggcaa
     8701 cagcgccggt aaagaaacca gcgccaaatc tgaagagaaa gcgtccactc cggcgcaacg
     8761 ccagcaggcg tctctggaag agcaaaacaa cgatgcgtta agcccggcga tccgtcgctt
     8821 gctggctgaa cataacctcg acgccagcgc tattaaaggc accggcgtgg gtggtcgtct
     8881 gacccgtgaa gatgtggaaa aacatctggc gaaatccccg gcgaaagagt ctgcaccggc
     8941 agcggctgct ccggcggcgc aaccggctct ggctgcacgt agtgaaaaac gtgtcccgat
     9001 gactcgcctg cgtaagcgtg tggcagagcg tctgctggaa gcgaaaaact ccaccgccat
     9061 gctgaccacg ttcaacgaag tcaacatgaa gccgattatg gatctgcgta agcagtacgg
     9121 tgaagcgttt gaaaaacgcc acggcatccg tctgggcttt atgtccttct acgtgaaagc
     9181 ggtggttgaa gccctgaaac gttacccgga agtgaatgct tctatcgacg gcgatgacgt
     9241 ggtttaccac aactatttcg acgtcagcat ggcggtttct acgccgcgcg gcctggtgac
     9301 gccggttctg cgtgatgtcg ataccctcgg catggcagac atcgagaaga aaatcaaaga
     9361 gctggcagtc aaaggccgtg atggcaagct gaccgttgaa gatctgaccg gtggtaactt
     9421 caccatcacc aacggtggtg tgttcggttc cctgatgtct acgccgatca tcaacccgcc
     9481 gcagagcgca attctgggta tgcacgctat caaagatcgt ccgatggcgg tgaatggtca
     9541 ggttgagatc ctgccgatga tgtacctggc gctgtcctac gatcaccgtc tgatcgatgg
     9601 tcgcgaatcc gtgggcttcc tgataacgat caaagagttg ctggaagatc cgacgcgtct
     9661 gctgctggac gtgtagtagt ttaagtttca cctgcactgt agacaggata aggcattatc
     9721 gccttctccg gcaattgaag cctgatgcga cgcttaacgc gtcttatcag gcctacggga
     9781 agcaccaatg taggtcggat aaggcgcttg cgccgcatcc gacaagcgat gcctgatgcg
     9841 acacttacgc gtcttatcag gcctacaggt gaccgacaat gcccggaggc gatacgaaat
     9901 attcggtcta cggtttaaaa gataacgatt actgaaggat ggacagaaca catgaactta
     9961 catgaatatc aggcaaaaca actttttgcc cgctatggct taccagcacc ggtgggttat
    10021 gcctgtacta ctccgcgcga agcagaagaa gccgcttcaa aaatcggtgc cggtccgtgg
    10081 gtagtgaaat gtcaggttca cgctggtggc cgcggtaaag cgggcggtgt gaaagttgta
    10141 aacagcaaag aagacatccg tgcttttgca gaaaattggc tcggcaagcg tctggtaacg
    10201 tatcaaacag atgccaatgg ccaaccggtt aaccagattc tggttgaagc agcgaccgat
    10261 atcgctaaag agctgtatct cggtgccgtt gtagaccgta gttcccgtcg tgtggtcttt
    10321 atggcctcca ctgaaggcgg cgtggaaatc gaaaaagtgg cggaagaaac tccgcagctg
    10381 atccataaag ttgcgcttga tccgctgaca ggcccgatgc cgtatcaggg acgcgagctg
    10441 gcgttcaaac tgggtctgga aggtaaactg gttcagcagt tcaccaaaat cttcatgggt
    10501 ctggcgacca ttttcctgga gcgcgacctg gcgttgatcg aaatcaaccc gctggtcatc
    10561 accaaacagg gtgatctgat ttgcctcgac ggcaaactgg gcgctgatgg caacgcactg
    10621 ttccgccagc ttgatctgcg cgaaatgcgt gaccagtcgc aggaagatcc gcgtgaagca
    10681 caggctgcac agtgggaact gaactacgtt gcgctggacg gtaacatcgg ttgtatggtt
    10741 aacggcgcag gtctggcgat gggtacgatg gacatcgtta aactgcacgg cggcgaaccg
    10801 gctaacttcc ttgacgttgg cggcggtgca accaaagaac gtgtaaccga agcgttcaaa
    10861 atcatcctct ctgacgacaa agtgaaagtc gttctggtta acatcttcgg cggtatcgtt
    10921 cgttgcgacc tgatcgctga cggtatcatc ggcgcggtag cagaagtggg tgttaacgta
    10981 ccggtcgtgg tacgtctgga aggtaacaac gccgaactcg gcgcgaagaa actggctgac
    11041 agcggcctga atattattgc agcaaaaggt ctgacggatg cagctcagca ggttgttgcc
    11101 gcagtggagg ggaaataatg tccattttaa ttgataaaaa caccaaggtt atctgccagg
    11161 gctttactgg tagccagggg actttccact cagaacaggc cattgcatac ggcactaaaa
    11221 tggttggcgg cgtaacccca ggtaaaggcg gtactaccca cctcggcctg ccggtgttca
    11281 acaccgtgcg tgaagctgtt gctgctactg gcgctaccgc ttctgttatc tacgtaccag
    11341 caccgttctg caaagactcc attctggaag ctattgatgc aggcatcaaa ctgattatca
    11401 ccatcactga aggcatcccg acgctggata tgctgactgt gaaagtgaaa ctggacgaag
    11461 ccggcgttcg tatgatcggc ccgaactgcc cgggcgttat cactccgggt gaatgcaaaa
    11521 tcggtatcca gccgggtcac attcacaaac cgggtaaagt gggtatcgtt tcccgttccg
    11581 gtacactgac ctatgaagcg gttaaacaga ccacggatta cggtttcggt cagtcgacct
    11641 gtgttggtat cggcggtgac ccgatcccag gctctaactt tatcgacatc ctcgaaatgt
    11701 tcgaaaaaga tccgcagacc gaagcgatcg tgatgatcgg tgagatcggc ggtagcgctg
    11761 aagaagaagc ggcagcgtac atcaaagagc acgttaccaa gccagttgta ggttacatcg
    11821 ctggtgtgac tgcgccgaaa ggcaaacgta tgggccacgc gggtgcgatc attgccggtg
    11881 ggaaagggac tgcggatgag aaattcgctg ctctggaagc cgcaggcgtg aaaaccgttc
    11941 gcagcctggc ggatatcggt gaagcactga aaactgttct gaaataaata tctgtaataa
    12001 gaaatagccc tcgccgcttc cctctacagg aatggcgaag ggctgtcggt ttcgacatgg
    12061 ttggccatcg tatgatggcc ttttttgtgc ttatcgcgat gattttcgct gcgctatcag
    12121 ggtaaattta tagtcatcgg tattaaaagc gttgcggcta tattcaaaca cccgaccatc
    12181 aactaaatat ccacgcgata ctttttcaag aatcggcttt gtctggctga tattaagcag
    12241 acggctcatc tcttcggttg gcatcagagg aatgatttcc tgttcgctac gatcgataac
    12301 catcttcttc acttcttcaa taaagtgata tttcgaattt tccatgacct gccaggtgag
    12361 atccgggaac aacgcaagcg gcatccaggt ttcttccagc gccattggct tttgcttgcg
    12421 atagcgcacg cgcttcacat gccacacacg atcctgcgcg gtgatttgta gctgttgctg
    12481 aagaaaatcg tcagccggaa tcacttcaaa tatcaggact tcactgtgtg tatcgacgtg
    12541 acggtccgac agtttttcat caaaactggt taactgaaaa atatcgtaat tgacccgctc
    12601 ttctttgacg taagtcccgc tgccctgaat gctttcgagg atctgctgct cgactagctg
    12661 gcgcaaagcc tgacgcaccg taacccggct gacgccaaac tctgtttgta gcgctgattc
    12721 agtgggtaac gcatcgccag gtttaagctc gccacgcgca atttgttcac gaatgcgatc
    12781 ggcaatctgc cggtataagg gcttgtgtcc catttttagt atctcattaa tacgaattta
    12841 gccattatgc ccgataaatt catcctgtaa ataatgcaaa tacaatacaa ataatttcaa
    12901 tcaagtgaaa ttgatcatat aatggtattg ttttatcggg cacactggcg cgactataaa
    12961 aacgatcaag tgaggatcat gatgaatctg acgactctga cccaccgcga tgcgttgcgt
    13021 ctgaatgcgc gctttaccag ccgtgaagag gccatccacg cgttgactca acgtcttgct
    13081 gctctgggga aaatttccag tactgagcaa tttctggaag aagtgtatcg ccgtgaaagc
    13141 cttggcccga ccgccttagg tgaagggttg gctgtgccgc atggcaaaac tgctgcggta
    13201 aaagaagcgg cgtttgcggt cgccacactc agcgagccgc ttcagtggga aggcgttgat
    13261 ggcccggaag cagttgattt agtggtgctg ctggcgattc cccccaatga agcgggtact
    13321 atgcatatgc aactgctgac agcgctgacc acgcgccttg cggatgatga gattcgggcg
    13381 cgtatacagt cggcgacgac gcctgatgag ttgctctcgg cgctggatga caagggaggc
    13441 acgcaacctt ctgcctcttt ttccaacgcg ccaactatcg tctgcgtacc ggcctgtccg
    13501 gcgggtattg ctcacaccta tatggctgcg gaatatctgg aaaaagccgg acgcaaactc
    13561 ggcgtaaatg tttacgttga aaaacaaggc gctaacggca ttgaagggcg tttaacggcg
    13621 gatcaactca atagtgcaac cgcctgtatt tttgcggctg aagtcgccat caaggagagt
    13681 gagcgtttta atggcattcc cgcgctttca gtgcctgttg ccgagccgat tcgccatgca
    13741 gaagcgttga tccaacaagc gcttaccctc aagcgtagcg atgagacgcg taccgtacag
    13801 caagatacgc aaccggtgaa aagtgtcaaa acggagctga aacaggcact gttgagcgga
    13861 atctcttttg ccgtaccgtt gattgtcgcg gggggcacgg tgctggcggt cgcggtatta
    13921 ctgtcgcaaa tcttcgggct acaagatctg tttaatgaag aaaactcctg gctgtggatg
    13981 taccgcaagc tgggcggcgg gctgctcgga attttgatgg taccggtgct cgcggcctat
    14041 accgcctatt ctctggcaga taaaccggcg ttagcgccag gctttgcggc tggacttgcc
    14101 gccaacatga tcggctccgg gtttctcggc gcggtcgttg gcggattgat agccggttac
    14161 ttgatgcgct gggtgaaaaa tcacttgcgt cttagcagta aattcaatgg attcctgact
    14221 ttttatctct acccggtgct cggtacgttg ggagcgggca gtctgatgct gtttgtggtg
    14281 ggagaacctg tcgcatggat caataactcg cttaccgcct ggctgaacgg tctgtcagga
    14341 agtaacgcgc tgttgctggg tgccattttc ggttttatgt gttcctttga tcttggaggg
    14401 ccagtgaaca aagccgctta tgcattctgc ctgggcgcaa tggtgaacgg cgtttacggc
    14461 ccgtatgcca ttttcgcctc cgtcaaaatg gtttcggcat ttaccgtaac cgcttccacg
    14521 atgctcgcac cgcgcctgtt taaagagttt gaaattgaga ccgggaaatc cacctggctg
    14581 ttagggctgg caggtattac cgaaggggcg atcccgatgg cgattgaaga tccgctgcgg
    14641 gttattggtt cgtttgtgct gggctctatg gtaacgggcg ctattgtcgg tgcgatgaat
    14701 atcggccttt cgacacccgg tgccggcatt ttctcgctct ttttacttca tgataatggc
    14761 gcgggcggtg ttatggcggc aattggctgg tttggtgcgg cattggtggg ggctgcaatc
    14821 tcgactgcaa ttctcctgat ctggcggcgt cacgcggtta agcatggcaa ctatctgact
    14881 gatggcgtaa tgccataaac aaaaaggaaa cgacgatgaa agcggtatct cgcgttcaca
    14941 tcaccccgca tatgcactgg gatcgagagt ggtatttcac caccgaagag tcacgtattc
    15001 tgctggtcaa taatatggaa gagatcctgt gccgactgga acaggacaac gaatacaaat
    15061 attacgtact cgacgggcaa acggcgatcc tcgaagatta tttcgcggtg aaaccggaaa
    15121 acaaagaccg tgtgaagaaa caggtagaag ccggcaagtt gattatcggc ccctggtata
    15181 cccagaccga taccacgatt gtttctgcgg aatccatcgt ccgtaatctg atgtacggaa
    15241 tgcgtgactg cctcgcgttt ggcgagccga tgaaaatagg ttatttacca gattcctttg
    15301 gcatgtccgg gcaactgccg catatctaca atggatttgg cattacccgc accatgttct
    15361 ggcgcggatg ttcggagcgc cacggtactg ataaaaccga gtttttgtgg caaagcagtg
    15421 acggtagcga agtgacggcg caggtgctgc cgctgggcta cgccataggt aagtacttac
    15481 ctaccgacga aaacggatta cgtaaacgcc tcgacagtta ttttgacgtg ctggaaaaag
    15541 cgtctgtaac caaagagatt ttgctgccga atggtcatga ccagatgcca ttgcagcaaa
    15601 atatcttcga agtgatggat aagctacgtg agatctaccc tcaacgtaag tttgtgatga
    15661 gccgctttga agaggtattt gagaagatcg aagcgcagcg tgaaagtctg gccaccctga
    15721 aaggtgaatt tatcgatggc aaatatatgc gcgtacatcg caccatcggt tccacgcgca
    15781 tggatatcaa aattgcccac gcacgtattg aaaataagat tgttaatctg ctggaaccgc
    15841 tggcaacgct ggcctggacg ttgggttttg aataccacca cggcttgctg gagaaaatgt
    15901 ggaaagagat cttaaaaaat catgcccacg acagtatcgg ttgttgttgc agtgacaaag
    15961 ttcatcgcga aattgtcgcc cgcttcgaac tggctgaaga catggcggat aatctgctgc
    16021 gtttctacat gcgcaaaatt gccgataaca tgccacagag tgatgccgac aaactcgtgc
    16081 tgtttaacct gatgccctgg ccgcgggaag aagttattaa caccactgtg cggctgcgcg
    16141 ccagccagtt taatctacga gacgatcgcg gtcagcctgt accgtatttt attcgccatg
    16201 cccgtgagat cgatccaggc ctaatcgatc ggcaaatagt tcattacggt aattacgatc
    16261 cctttatgga gtttgatata cagatcaacc agattgtccc ttctatgggc tatcgcacgc
    16321 tttatatcga agcgaatcag cctggcaacg tgattgcggc aaaaagtgac gctgaaggga
    16381 tactggaaaa tgctttctgg caaattgcgc tcaatgagga tggttctctg caactggtag
    16441 ataaagacag cggtgtgcgc tatgaccgag tattgca
//
LOCUS       DAJVUY010000091        16370 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.091, whole genome shotgun sequence.
ACCESSION   DAJVUY010000091 DAJVUY010000000
VERSION     DAJVUY010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.091"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..190
                     /locus_tag="OQQ72_002602"
     CDS             <1..190
                     /locus_tag="OQQ72_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012277.1"
                     /translation="DMLNPTKDTNWNSTCIYKSRHKMLPVNLTQETLFNSKSQDKHAL
                     FPIFTASWRAYRIMNKGA"
     gene            413..910
                     /gene="ubiC"
                     /locus_tag="OQQ72_002603"
     CDS             413..910
                     /gene="ubiC"
                     /locus_tag="OQQ72_002603"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HCS2012278.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ72_002604"
     CDS             923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ72_002604"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HCS2012279.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ72_002605"
     CDS             complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ72_002605"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HCS2012280.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ72_002606"
     CDS             4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ72_002606"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCS2012281.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ72_002607"
     CDS             5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ72_002607"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HCS2012282.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ72_002608"
     CDS             5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ72_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HCS2012283.1"
                     /translation="MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVY
                     LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARALVQPLLLALGAGAL
                     IALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA
                     PVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGI
                     SGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTL
                     LTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGE
                     HIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAA
                     GFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT"
     gene            7144..7353
                     /locus_tag="OQQ72_002609"
     CDS             7144..7353
                     /locus_tag="OQQ72_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HCS2012284.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ72_002610"
     CDS             complement(7395..7910)
                     /gene="zur"
                     /locus_tag="OQQ72_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HCS2012285.1"
                     /translation="MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISA
                     YDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFI
                     CDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQH
                     DHSVQVKKKPR"
     gene            8228..9213
                     /locus_tag="OQQ72_002611"
                     /pseudo
     CDS             8228..9213
                     /locus_tag="OQQ72_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 domain-containing protein"
     gene            9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ72_002612"
     CDS             9576..10613
                     /gene="dusA"
                     /locus_tag="OQQ72_002612"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HCS2012286.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ72_002613"
     CDS             10747..10989
                     /gene="pspG"
                     /locus_tag="OQQ72_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HCS2012287.1"
                     /translation="MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(11154..12137)
                     /locus_tag="OQQ72_002614"
     CDS             complement(11154..12137)
                     /locus_tag="OQQ72_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HCS2012288.1"
                     /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ72_002615"
     CDS             12220..13635
                     /gene="dnaB"
                     /locus_tag="OQQ72_002615"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS2012289.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            13688..14767
                     /gene="alr"
                     /locus_tag="OQQ72_002616"
     CDS             13688..14767
                     /gene="alr"
                     /locus_tag="OQQ72_002616"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS2012290.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ72_002617"
     CDS             15020..16213
                     /gene="tyrB"
                     /locus_tag="OQQ72_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HCS2012291.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         3913 a         3901 c         4334 g         4222 t
ORIGIN      
        1 tgatatgttg aatcctacaa aagataccaa ttggaattct acgtgtatct ataaatccag
       61 acataagatg ttgcctgtta atcttactca ggaaacactt ttcaactcca aatctcagga
      121 taaacatgcg cttttcccca tttttactgc gagttggcga gcttatcgta taatgaataa
      181 gggtgcttaa gtaaaggaaa acatcaccgt tcctggcatc ctgggcggtg atgcccctat
      241 ggttgccctc gccagcgcgg gcatcggcaa agcgtaaggt tcaaaagcga tttaccactt
      301 catgcgattg ttgcgttttt gttgcgcatt agatcactta atttgcttta catctcccgt
      361 aaacactttt ctgcgataca atgcctttac gttatgtaac ggagagttcg gcatgtcaca
      421 ccccgcgtta acgcaactgc gtgcgctgcg ctattttaaa gagatccctg ccctggatcc
      481 gcaactgctc gactggctgt tgctggagga ttccatgaca aaacgttttg aacagcaggg
      541 aaaaacggta agcgtgacga tgatccgcga agggtttgtc gagcagaatg aaatccccga
      601 agaactgccg ctgctgccga aagagtctcg ttactggtta cgtgaaattt tgttatgtgc
      661 cgatggtgaa ccgtggcttg ccggtcgtac cgtcgttcct gtgtcaacgt taagcgggcc
      721 ggagctggcg ttacaaaaat tgggtaaaac gccgttagga cgctatctgt tcacatcatc
      781 gacattaacc cgggacttta ttgagatagg ccgtgatgcc gggctgtggg ggcgacgttc
      841 ccgcctgcga ttaagcggta aaccgctgtt gttaacagaa ctgtttttac cggcgtcacc
      901 gttgtactaa gaggaaaaaa atatggagtg gagtctgacg cagaataagc tgctggcgtt
      961 tcatcgctta atgcgtacgg ataagccaat tggcgcgtta ctgctgctct ggccaacatt
     1021 atgggcgttg tgggtggcga caccgggcgt tcctcagctc tggatcctgg cggtatttgt
     1081 cgcgggtgtc tggctgatgc gcgctgccgg atgtgtggtg aatgattatg ctgaccgaaa
     1141 gtttgatggt catgttaagc gcacggcgaa ccgaccactt cccagcggcg cggtaacaga
     1201 gaaagaggcg cgcgcgctgt ttgtagtgct ggtactgatt tcgtttttac tggtactgac
     1261 gctgaatacg atgaccattc tgttgtcgat tgccgctctg gcgttggcgt gggtgtaccc
     1321 gtttatgaag cggtataccc atctcccgca agtggtgctg ggcgcggcgt ttggctggtc
     1381 gattccaatg gcttttgccg ctgtgagtga gtcggtgcca ttgagttgct ggttaatgtt
     1441 cctcgccaat attctctggg cggtggctta cgacacgcag tatgcgatgg ttgaccgcga
     1501 tgatgatgtg aagattggca ttaaatccac ggcaatcctg ttcggccaat acgataaatt
     1561 gattattggt attttgcaga ttggcgtact ggcactgatg gcgatcatcg gtgagttaaa
     1621 tggcttaggc tggggatatt actggtcaat tctggtggct ggcgcgctgt ttgtttatca
     1681 acaaaaactg attgccaacc gcgagcgtga agcctgcttt aaagcattta tgaataataa
     1741 ctatgttggt ctggtactat ttttagggct ggcaatgagt tactggcatt tctgatgatg
     1801 taaaaaagcc ggatgatcat ccggctttct tctgggttgc ctgatgcgcg gcgcttctca
     1861 ggcctacaca acacatcgca atttattgaa tttgcagatt atggaatgcc ggataaggcg
     1921 ttttcgccgc atccggcaat tctctctggt tacccttcgc cctgcgtcgc actctcaatc
     1981 gtcaaacgca cgtctgatgt aatcaactcc gccagcaact gataaacctt catcgtttct
     2041 gccggttcgg catcgccgct atcgctgata tacccttcat cacgcagcgt cagcaccaga
     2101 gaactgaaca ccgccttgtc gaagaactcc ggcgcgttga taccgtgcag cacggagaga
     2161 cgttgcgcga cggtgcggct ctctttctcc agcgtaccgc ggttgatcga cgggttagcg
     2221 ctcaacagcc agaaggtgat ggcataacgt tgcagcgttt cgcgcgcgcc tgcggccagc
     2281 agctgtagcg tgcgagaatg cgacgggttg atatgcaact catcatcttg cagggtaatc
     2341 agcccctgac gttgcatctc atttgccaac gcatcaataa cgtccggcaa ctcgtcgcga
     2401 tcccagcgca ggaacagctc cgctttcagc attgggtaaa gcacattgac gtgctccatc
     2461 aatacgtcgc gggagatgtg gcgatgctgg gtgacaattg ccgccatcag cgaaggcagc
     2521 accaacatat gcgcaatgtt gttgcgatag taggtcatca gcaccgcttg ctcgcgcggc
     2581 agaatgatga tgtcgccgat agtgtctttc tcaacttcaa acttgttcat ttgcagcgcg
     2641 tgatcgataa gctcgctggc gctggctgaa ggaacggtag agtccgtgga gtaaggtacg
     2701 ttgcgcatca gatccaggta gcagttgagt tgctcggtta actgctcgcg ggtaagtgag
     2761 cgctgacgtg atgccagtag cgcggtacag cagaggttca tggcgtttgc cgcgcctgcg
     2821 ttgttaatgc gtaccatcag atcggcagca atattattga ccgtcggcgt taaccatgcc
     2881 ggacgcaccg cttcgatggg atcgatagat tcacgccagt caggtacatg ctggttaagg
     2941 taggtcatca acggcattgg ttcaccgaag ttgacgtaac cctgaccgag attacgcagc
     3001 ttgcttaaac cgcgcagcat ctgcggcagg ctctctttct ctttcgtcgc accgcgcagt
     3061 tctttggcgt aagtacccac ttccatgacg tgctcataac cgatatagat cggaatcagc
     3121 gtaatcggac gcgtgccgcc acgcagcatc gcctgaatgg tcatcgacag cgtaccggtt
     3181 ttcggatcca gcaaacgccc cgtacgggaa cgaccgcctt ccacgaaata ctcgacggaa
     3241 taaccacggc tgaacagttc gccgagatac tcacggaaaa cggtggaata aagtttattg
     3301 cctttaaacg tacggcgaat aaagaacgcc cccagacggc ggaaaatcgg cccggccggc
     3361 cagaaattca ggttgatccc ggcggcgata tgcggcggca ccagcccctg gtggtacagc
     3421 acgtaagaaa gtagcaggta gtccatgtga ctgcggtggc aaggcacata caccagctca
     3481 tgaccgtcgt gggccagctg gcgaacgcgc tcggcgttat ggacgttgat gccctgataa
     3541 agtcggttcc aggtgaagcc cagaatgcgg tcagtcaggc ggatcatctc gtaagagaaa
     3601 ttcgccgcaa tctcttccat cagcgcaatc gcgttctgct gcgctttttc atgggagatt
     3661 tttttgctgc gcgcttcatc ttctaccgct ttggcaatgg cgcgggaggc gagcagctta
     3721 ttaaacagat cctgacgagc aggcagacgt gggcccacag cagccagacg ttgacgggca
     3781 aagtgcatac gcgccacgcg cgccagtttc tgtgcgatag ttttatccgt gccgtgttca
     3841 tccgccatac ggcgcagcga aactgacggc gagaaacgca caaaactgtc gcgaccgagc
     3901 cacagtacgg cgaaaaattt ctgtacgccg ttaagcatac gcagcggcgg gtttacttcg
     3961 cctttttcac gccccggcgc gcgaccaaac atcaccgata ctggcaccat ctgcacatcc
     4021 agatttgggt tgctacggtg caaatcgaga tagtcgtgga acagcttaat agactcttct
     4081 ttcggcgtgt aataggtgaa tacacgcggc ccgccgtgaa tgaacacata gcgcggcagt
     4141 agcgtgccgt cgatttccag cggctctaac gggtcaggca agtcatgagc cagacactgg
     4201 gcgcgtaacg tcagcaaatc tgctttcgag ttgtacggta aaacgtacat aattggacga
     4261 gaggtatcca gccccagttc cggggcagga tctgccggaa tagacttgct ttttaccagg
     4321 atgcttaatg gtaaattcag taatttgtag taaattcgtg gccagccgga cataaacgat
     4381 gtaaagcctc tggttaataa tgcaaatgcg cggcaaggat agcagaaagt catgggaaat
     4441 tctgtggtat ccgctcatgt ttcgcgcggc gttacgcaaa cccgaatcat cggatttaac
     4501 ggtacactga tattgacgct cataatgtaa aaaggttctt tcaatggcca ataataccac
     4561 tggattcacc cgaattatca aagctgctgg ctattcctgg aaaggtttac gcgctgcatg
     4621 gatcaacgaa gcggcattcc gtcaggaagg cgtagcggta ttgttggcgg tggtcatcgc
     4681 ctgctggctg gatgtggacg caattacccg cgtgctgctt atcagctccg tgatgctggt
     4741 gatgattgtg gaaatcctca atagcgccat cgaagcagtg gttgaccgaa ttggctctga
     4801 ataccatgag ctttccggac gcgcaaaaga tatgggatcc gccgcggtgc tgattgcgat
     4861 tatcgtcgcc gtgataacct ggtgcatcct gttatggtcg cattttggat aacccttcca
     4921 gaattcgata aatctctggt ttattgtgca gtttatggtt ccaaaatcgc cttttgctgt
     4981 atatactcac agtataactg tatatacacc cagggggcgg aatgaaagcg ttaacggcca
     5041 ggcaacaaga ggtgtttgat ctcatccgtg atcacatcag ccagacaggt atgccgccga
     5101 cgcgtgcgga aatcgcgcag cgtttggggt tccgttcccc aaacgcggct gaagaacatc
     5161 tgaaggcgct ggcacgcaaa ggagttattg aaattgtttc cggcgcatca cgcgggattc
     5221 gtctgttgca ggaagaggaa gaagggttgc cgctggtagg tcgtgtggct gccggtgaac
     5281 cgcttctggc gcagcagcat attgaaggtc attatcaggt cgatccttcc ttattcaagc
     5341 cgaatgctga tttcctgctg cgcgtcagcg ggatgtcgat gaaagatatt ggcattatgg
     5401 atggcgactt gctggcagtg cataaaactc aggatgtacg taacggtcag gtcgttgtcg
     5461 cacgtattga tgacgaagtt accgttaagc gcctgaaaaa acagggcaat aaagtcgaac
     5521 tgttgccaga aaatagcgag tttaaaccaa ttgtcgttga ccttcgtcag cagagcttca
     5581 ccattgaagg gctggcggtt ggagttattc gcaacggcga ctggctgtaa catatctctg
     5641 agaccgcgat gccgccaggc gtcgcggttt gtttttcatc tctcttcatc aggcttgtct
     5701 gcatggcatt cctcacttca tctgataaag cactctggca tctcgcctta cccatgattt
     5761 tctccaatat caccgttccg ttgctgggac tggtcgatac ggcggtaatt ggtcatcttg
     5821 atagtccagt ttatttgggc ggcgtggcgg ttggtgcaac ggcgaccagc tttctcttta
     5881 tgctgttgct gtttttacgc atgagcacca ccgggctgac tgcgcaggct tatggtgcca
     5941 aaaatcctca ggcattagcc cgtgcgctgg tgcaaccgtt gctgttggcg ttgggggcag
     6001 gggcgttaat tgcgctgctg cgtacaccga ttatcgatct ggcactgcat attgttggcg
     6061 gtagtgaagc agtcctggaa caggcgcggc gctttcttga aatccgctgg ttaagcgcac
     6121 cggcgtcact ggcgaatctg gtattacttg gttggttact cggcgtgcaa tatgcccgtg
     6181 cgccagtaat tttgttagtg gtcggcaata tcctcaacat tgtgctggat gtctggctgg
     6241 tgatggggct gcatatgaac gtgcagggcg cggcgctggc gacggttatt gcggaatatg
     6301 caacattgct gattggtctg ctaatggtgc gtaaaatcct caaactacgc ggaatttccg
     6361 gcgaaatgct gaaaactgcc tggcgaggaa acttccgtcg cttgctggcg cttaaccgcg
     6421 atatcatgct gcgttcgctg ttgttgcaac tctgtttcgg cgcgatcacc gtacttggtg
     6481 cgcgactggg gagtgacatt atcgctgtta acgcggttct gatgacgcta ctcaccttta
     6541 ccgcctatgc gctggatggt tttgcctacg cggttgaagc gcattccggt caggcgtacg
     6601 gtgcgcgcga cggtagccag ttgctggatg tctggcgggc agcgtgccgc cagtcgggga
     6661 tcgtagcgtt actgttttcg gtagtttatt tgctggcagg ggaacacatc attgcgttgc
     6721 tgacgtcgtt aacccagatt cagcagctgg ccgaccgcta tcttatctgg caggtgattt
     6781 tgccgttggt tggcgtctgg tgttatctgc tggacggcat gtttataggc gcaacgcgcg
     6841 cagccgaaat gcgtaacagt atggcggtgg ccgccgcagg ttttgcgctg acgctcctta
     6901 cgctgccgtg gctgggtaat catgctttgt ggctggcgtt aaccgtcttt ctggcgttgc
     6961 gcgggctttc tctggcggct atctggcggc gtcactggcg caacggtacc tggtttgccg
     7021 caacgtgacg gttaaaaatt ctgaataaat aatcctaagc caaattgctg actacactta
     7081 atctcacgtt cagaagaaaa gtgaacgtac tctcattcac aacctaacga tgaggtcttg
     7141 attatgaata aagatgaagc cggcggtaac tggaaacagt ttaaaggtaa agtgaaagag
     7201 caatggggca aactgaccga tgatgatatg acgatcattg aaggtaaacg tgatcaactg
     7261 gtcggtaaaa tccaggaacg ttatggttat cagaaagatc aggcagaaaa agaggtcgtg
     7321 gattgggaaa cccgcaatga atatcgctgg taattaatcc ctcctgcccg acgtgtacaa
     7381 ggatgtacgc cctcttaacg cggtttcttt ttcacctgca cagagtgatc atgctggcac
     7441 tgttcaggat gacgacacgc ttccacttcc acgcatgccg cacagagccc atgtgcttca
     7501 atcacattat gccgcagggc aaaccccatt tttgccgcca gcgtatgcat gatgtcttcc
     7561 acgccttctg cacactcttc tttcactgcg ccgcagcgat cgcaaataaa catagctgaa
     7621 gtatgggtgg actggtcgaa cagatgacag agcacataac tgttggtgga ttccacctta
     7681 tgcacaaaac cttgctcaag cagaaaatcc agcgcgcgat aaaccgttgg cggcttggct
     7741 tgcggttcag cttcgcgcag taaatcaagc agatcataag cgctgatagc gccatcctgc
     7801 agactcatca ggcgcaacac ttccaggcgc tgtggggtca ggcgcacatt acgctgcgcg
     7861 cagatttttt cagcctgcgc taataactcc tgcgttgtgg tcttttccat cgggcacctc
     7921 aaagtggggg ttaagaatgt ccttacttta ccatgttcca ggaaaaacac cgagaaccct
     7981 tattgttgcc gtaatgttga ttttctgttt tgtaggtaag gtgttatgtt gccttgtcgt
     8041 accattatca acacgataat aattaataat tcatttttaa ataaattgct tcaagttaac
     8101 tcgctattta tttaactggg tttaaacgca tacctgtagt tcagaaatta tgagcgattt
     8161 ttgatagtga ccagatggca aaagaattat aaggaggaca cggtacgaca aaaaaggtag
     8221 atgaatcatg ttgaagataa tacccggtgc aactggatac tttaataaaa cactcaattc
     8281 aaatcaattc gataatgaag atgcaatcaa agataaatta gataatagag gttcaatcaa
     8341 aggtaaatta aataatatat atggtaaatc tattgattat gcagcgctgc gtcatcggga
     8401 tataattatt gcaaaaatag atttgtttat tcaacgaatc acgcataatt tatggcatgc
     8461 acgtaaaaaa atgtgttttt aattgagcaa ataaatgatc tcaaaatgtg ggtcaataag
     8521 tatattgacg attgcactga tgaggattta aacgatcgtg actttattgc atcagttgtt
     8581 gaccgggcta tttttcattt cgcgattaat agtatatgta atcctgggga taataaagat
     8641 gcgactccca ttgaacaatg tacttttgat gtagaaacta agaatggcct tccctccacg
     8701 gttcagctat tttatgagga atctaaggat aatgaacctt tagcgaatat acattttcaa
     8761 acaataggtt ctggtttttt aacgtttgtt aatgcctgcc aggaacatga tgacaacagc
     8821 ttaaaattat ttgcttcgct gttaatttca ctttcatatt ctagtgccta cgcagattta
     8881 tcagaaacag tgtatattaa tgaaaataat gagagctacc tgaaagctca gtttgaaaaa
     8941 ttatctcaac gtgatatgaa gaagtacctg ggagagatga agcgtctggc tgatggggga
     9001 gaaatgaatt ttgatggcta tctggataag atgtcacatc tggtgaatga agggacgctc
     9061 gatcctgata ttttaagcaa aatgcgagat gctgcaccac aattaattag cttcgcgaag
     9121 tcgtttgacc caacctcaaa ggaagagatt aaaatactta cagacacttc taaattaatt
     9181 tatgatttgt tcggggttaa atcggagaaa taatatgtga agttcttcga tagtatggaa
     9241 ggcattatat aaaaggaccc aatatttatt gggtcctttt ttctctatca atgctattag
     9301 cagggagata tatcaccaaa gtttaatgtg tgatttttta tttatcgtcg aacctggatt
     9361 gtttatcatt ggccttaaca aagttaacgg ctaataagat tatttccatc acttcgtgag
     9421 agcttcatgc cttgagagga tctcaatttt cttttgcaat gagacaggcg cttcctgttg
     9481 ttatggtata gtaccccgct attgagcctc ctgaatagtg atgctgaata acataacccc
     9541 atgatatatc gataaaataa tctctacatt tgaaaatgca cggtaattct gaaatgcaaa
     9601 aaatcaacca aaccagcgca atgcctgaaa aaactgacgt tcactggagt ggtcggttta
     9661 gcgttgcacc aatgctcgac tggacggaca gacattgccg ctatttcttg cgtctgcttt
     9721 cccgcaatac gttgctgtat accgaaatgg tgaccacagg ggcgattatt cacggtaaag
     9781 gtgattacct ggcgtacagt gaagaagaac atccggtagc gttgcaactc ggcggtagcg
     9841 atccggcggc gctggcacag tgtgcgaagc tggcagaagc gcgtggatat gatgagatca
     9901 acctgaatgt cggctgcccg tctgaccggg tgcagaacgg catgtttggt gcgtgtctga
     9961 tgggtaatgc gcagctggtt gccgattgcg tgaaagcgat gcgcgatgtg gtgtcgattc
    10021 cggtgacggt gaaaacgcgt attggcatcg atgaccagga cagctatgaa tttctctgcg
    10081 atttcatcaa caccgtttcc ggcaaaggcg agtgtgggat gttcatcatc catgcacgta
    10141 aagcctggct ttcggggtta agcccgaaag aaaaccgtga aatcccgccg ctcgattatc
    10201 cgcgtgtgta tcaactgaag cgtgactttc cgcatctgac aatgtcgatt aacggtggta
    10261 tcaagtcgct ggaagaggcc aaagcacacc tgcaacatat ggatggcgtg atggtcgggc
    10321 gcgaggcgta tcagaatccg ggtattctgg cggcggtaga ccgggagatc tttggttcct
    10381 cggataccga tgcctatccg gtggcggtag tgcgcgccat gtatccgtac attgagcgtg
    10441 aactcagcca ggggacgtat ctcggccata ttacccggca tatgttgggc ttgttccagg
    10501 gtattcctgg cgcgcggcag tggcggcgtt atttaagtga aaatgcccat aaagcgggtg
    10561 cagacattaa tgtgctggaa cacgcgctca aactggtggc ggataagcgt taacttttca
    10621 ccaaaaagta gtcaaattca ccacgccctg cgcaccgtcg cggggcgttt tgctgttaaa
    10681 tcaatagatt atttttggca tgattcttgt aatgccagca agagatttca tatttgggag
    10741 agcatcatgc tggaactact ttttgtgatt ggcttttttg tcatgctgat ggtcaccggc
    10801 gtttcgttgc tgggcattat cgccgcgctg gttgtggcga cggccattat gttcctcggc
    10861 ggtatgctgg cattgatgat taagttgctg ccgtggttac tactggcgat tgcggtggtg
    10921 tgggttatta aggcgattaa agcaccaaaa gtgcctaaat atcagcgtta tgaccgctgg
    10981 cgttactaag ggattgtgcg gatgatcaca acctaaggtt ttatccttag aacaaaatag
    11041 gaattgataa tcaaatctgt cactattgcg cctctaacag attcatcgtg ctgtacccta
    11101 catacagccg actataaaaa gaaagggctt cccaggtgga agccctattt cttttatgga
    11161 atcagcaggc tggaaccttg cgtcgcccgg ctttccagaa tctcatgcgc acgctgcgca
    11221 tccttcagcg gatatttctg ctgctcggcg acatcgacct taatcacacc gctggcaatc
    11281 aaagagaaca gttcattact ggcctcggtt aattcctccc gtgtggtgat atagccttgc
    11341 agggaagggc gtgtcacata caacgagcct ttttgattga gaatgcctaa gttcacaccg
    11401 gtaaccgcac ctgatgagtt gccaaaactg accattaagc cgcggcgttg caggcaatcc
    11461 agcgaccgtt cccaggtgtc tctgcccacg gaatcgtaca ctacgcgcac tttcttaccg
    11521 ccggtgatct ctttcaatcg ctcgaccaga ttctcttcac gatagttaat aacctgccac
    11581 gcgccggctt ttagcgcgct ctgcgctttt tgcgcggttc ctacggtgcc gataagtttc
    11641 gcgcccagag cttttgccca ctggcaggca atcaagccaa cgccgccagc cgctgcgtgg
    11701 aacaggaact gttcatcggg tttaatttca taggttttgc gcagcagata ataaaccgtt
    11761 aagcctttca ggaaagatgc tgcagcttgc tcaaaagaaa tagccgcagg cagaatcgcc
    11821 gctttatccg cattaatgtt atgcacagag ctgtaagcgc ctaacgccga ctgcgcatag
    11881 actacacgat cgcctgcctt aatatgcttt acaccactgc cgactttact cacgatgcct
    11941 gccgcttcgg tacctgatcc gctgggtagt gatggcggcg ggtaaaggcc gctgcggata
    12001 tacgtgtcga taaaattgat gccgatggct ttattttcga cctggatttc attctctgcc
    12061 ggatcggcag gagtgaactc tacggcttga agtacttccg ggccaccgtg cttgtgaaat
    12121 tcaattcgtg ttgccatgtg tcctccagaa cgtatcgtca gggtctgctt catatggtaa
    12181 agtttcgacc cattctttat ctcggtaact ccattcacta tggcaggaaa taaacccttc
    12241 aacaaacagc aggctgaacc ccgcgaacgc gatccacaag ttgccgggct gaaagtgcct
    12301 ccgcactcga tcgaagcgga gcagtcggtg ttgggcggtt taatgctgga taacgaacgc
    12361 tgggacgatg tagccgagcg tgtggtggca gacgattttt acacccgccc acaccgccat
    12421 atctttactg aaatggcgcg tttgcaggaa agcggtagtc ctatcgatct gattaccctt
    12481 gcggaatcgc tggaacgcca ggggcaactc gatagcgtcg gtggttttgc ttatctggca
    12541 gagctgtcaa aaaatacgcc aagtgcggcg aacatcagtg cttatgctga catcgtgcgt
    12601 gaacgtgccg ttgtccgtga gatgatctcg gttgcgaatg agattgctga agccggtttt
    12661 gatccgcagg ggcgtaccag cgaagatctg ctggaccttg ctgaatcgcg cgtctttaaa
    12721 attgccgaaa gtcgtgcaaa caaagacgaa gggccgaaga acatcgccga tgtgctcgac
    12781 gcaaccgtgg cgcgtattga gcagttgttt cagcagccac acgatggcgt taccggagta
    12841 aacaccggtt atgacgatct caacaaaaaa accgctggct tgcagccgtc ggatttgatc
    12901 atcgtcgccg cgcgtccgtc gatgggtaaa acaacatttg cgatgaacct cgtcgaaaac
    12961 gcggcgatgt tgcaggataa accagtactt atcttctcgc tggagatgcc ttcagaacag
    13021 attatgatgc gttctctggc gtcgctgtcg cgcgttgacc agactaaaat ccgtaccggg
    13081 cagctcgatg atgaagactg ggcgcgcatt tccggcacca tgggtatttt gctcgaaaaa
    13141 cgcaatatct atatcgatga ctcctccggc ctgacgccaa cggaagtgcg ttcccgcgca
    13201 cgccgtattg cccgtgaaca cggcggcatc gggcttatca tgatcgacta cctgcaactg
    13261 atgcgcgtac cggcgctttc cgataaccgt acgctggaaa ttgcagaaat ctctcgctcg
    13321 ctgaaagcac tggcgaaaga actgaacgtg ccggtggtgg cgctgtccca gttgaaccgt
    13381 tctctggaac aacgtgccga caaacgcccg gtcaactccg acctgcgtga atctggctct
    13441 atcgagcagg atgcggactt gatcatgttt atctatcgtg atgaggtgta tcacgaaaac
    13501 agtgatttaa aaggcatcgc ggaaattatt atcggtaaac aacgtaacgg cccaatcggg
    13561 acggtacgcc tgacctttaa cggtcaatgg tcgcgcttcg acaactatgc ggggccgcag
    13621 tacgacgacg aataataatt attttatgaa ttaggcaatt aaagcaaaca cttatcaagg
    13681 aacacaaatg caagcggcaa ctgttgtgat taaccgccgc gctctgcgac acaacctgca
    13741 acgtcttcgt gaactggccc ctgccagtaa aatggttgcg gtggtgaaag cgaacgctta
    13801 tggtcacggt cttcttgaga ccgcgcgaac gctccccgat gctgacgcct ttggcgtagc
    13861 ccgtctcgaa gaagctctgc gactgcgtgc ggggggaatc accaaacctg tactgttact
    13921 cgaaggcttt tttgatgcca gagatctgcc gacgatttct gcgcaacatt ttcataccgc
    13981 cgtgcataac gaagaacagc tggctgcgct ggaagaggct agcctggacg agccggttac
    14041 cgtctggatg aaactcgata ccggtatgca ccgtctgggc gtaaggccgg aacaggctgg
    14101 ggcgttttat catcgcctga cacagtgcaa aaacgttcgt cagccggtga atatcgtcag
    14161 ccattttgcg cgcgcggatg aaccaaaatg tggcgcaacc gagaaacaac tcgctatctt
    14221 taataccttt tgcgaaggca aacctggtca acgttccatt gccgcgtcgg gtggcattct
    14281 gctgtggcca caatcgcatt ttgactgggt gcgcccgggc atcattcttt atggcgtctc
    14341 gccgctggaa gatcgctcca ccggtgccga ttttggctgt cagccagtga tgtcactaac
    14401 ctccagcctg attgccgtgc gtgagcataa agccggagag cctgttggtt atggtggaac
    14461 ctgggtaagc gaacgtgata cccgtcttgg cgtagtcgcg atgggctatg gcgatggtta
    14521 tccgcgcgcc gctccatccg gtacgccagt gctggtgaac ggtcgcgaag taccgattgt
    14581 cgggcgcgtg gcgatggata tgatctgcgt agacttaggt ccacaggcgc aggacaaagc
    14641 cggggatccg gtcattttat ggggcgaagg tttgcccgta gaacgtatcg ctgaaatgac
    14701 aaaagtgagc gcttacgaac ttattacgcg cctgacttca agggtcgcga tgaaatacgt
    14761 ggattaatcg ttctgtaata tttgattgtc tgtgccggat gcggcgtgaa tgccttatcc
    14821 ggccaataaa atcctaaaaa ttcaataagt tgatgttctt tcatgctctt ataaaggtcg
    14881 tgcctctggc ggatgttcgt ttgtcatgag tctcactctg ttgctaattg ccgttcgctc
    14941 ctgaacatcc actcgatctt cgccttcttc cggtttattg tgttttaacc acctgcccgt
    15001 aaacctggag aaccatcgcg tgtttcaaaa agttgacgcc tacgctggcg acccgattct
    15061 tacgcttatg gagcgtttta aagaagaccc tcgcagcgac aaagtgaatt taagtatcgg
    15121 tctgtactac aacgaagacg gaattattcc acaactgaaa gccgtggcgg aggcggaagc
    15181 gcgcctgaat gcgcagcccc atggcgcttc gctttattta ccgatggaag ggcttaacag
    15241 ctatcgccat gccattgcgc cgctgctgtt tggtgcggac catccggtac tgcaacaaca
    15301 gcgcgtagca accattcaaa cccttggcgg ctcaggggca ttgaaagtgg gcgcggattt
    15361 cctgaaacgc tacttcccgg aatcaggcgt ctgggtcagc gatcctacct gggaaaacca
    15421 cgtagcaata ttcgccgggg ctggattcga agtgagtact tacccctggt atgacgaagc
    15481 gactaacagc gtgcgcttta atgacctgtt ggcgacgctg aaaacattac ctgcccgcag
    15541 tattgtgttg ctgcatccat gttgccacaa cccaacaggt gccgatctca ctaatgatca
    15601 gtgggatgcg gtgattgaaa ttctcaaagc ccgcgagctt atcccattcc tcgatattgc
    15661 ctatcaagga tttagtgccg gtatggaaga ggatgcctac gctattcgcg ccattgccag
    15721 cgctggatta cccgctctgg tgagcaattc gttctcgaaa attttctccc tttacggcga
    15781 gcgcgtcggc ggactttctg ttctgtgtga agatgccgaa gccgctggcc gcgtactggg
    15841 gcaattgaaa gcaacagttc gccgcaacta ctccagcccg ccgaatttgg gtgcgcaggt
    15901 ggtggctgca gtgctgaatg acgaggcatt gaaagccagc tggctggcgg aagtagaaga
    15961 gatgcgtact cgcattctgg caatgcgtca ggaattggtg aaggtattaa gcacagagat
    16021 gccagaacgc aatttcgatt atctgcttaa tcagcgcggc atgttcagtt ataccggttt
    16081 aagtgccgct caggttgacc gactacgtga agaatttggt gtctatctca tcgccagcgg
    16141 tcgcatgtgt gtcgccgggt taaatacggc aaatgtacaa cgtgtggcaa aggcgtttgc
    16201 tgcggtgatg taatgcagga aagcaggctg gagttaccca gcctgcagtg aaattaaact
    16261 gtcgtcgctt tcactatttc tttgtagatg atttttttga tgccgttgtt ctacgtgaga
    16321 gataataaaa cgttgtcagt tcttttattg ttaagtttat cccaattaac
//
LOCUS       DAJVUY010000092        16161 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.092, whole genome shotgun sequence.
ACCESSION   DAJVUY010000092 DAJVUY010000000
VERSION     DAJVUY010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16161
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.092"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(206..1306)
                     /gene="chaA"
                     /locus_tag="OQQ72_002618"
     CDS             complement(206..1306)
                     /gene="chaA"
                     /locus_tag="OQQ72_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HCS2012292.1"
                     /translation="MSNAQEAVKTRHKEISLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
     gene            1576..1806
                     /gene="chaB"
                     /locus_tag="OQQ72_002619"
     CDS             1576..1806
                     /gene="chaB"
                     /locus_tag="OQQ72_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HCS2012293.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            1964..2659
                     /gene="chaC"
                     /locus_tag="OQQ72_002620"
     CDS             1964..2659
                     /gene="chaC"
                     /locus_tag="OQQ72_002620"
                     /EC_number="4.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-specific
                     gamma-glutamylcyclotransferase"
                     /protein_id="HCS2012294.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYPDGVLRPGFA"
     gene            complement(2703..3056)
                     /gene="ychN"
                     /locus_tag="OQQ72_002621"
     CDS             complement(2703..3056)
                     /gene="ychN"
                     /locus_tag="OQQ72_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HCS2012295.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            3240..4634
                     /gene="ychO"
                     /locus_tag="OQQ72_002622"
     CDS             3240..4634
                     /gene="ychO"
                     /locus_tag="OQQ72_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HCS2012296.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYFTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEYNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            complement(4635..5285)
                     /gene="narL"
                     /locus_tag="OQQ72_002623"
     CDS             complement(4635..5285)
                     /gene="narL"
                     /locus_tag="OQQ72_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HCS2012297.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(5278..7074)
                     /gene="narX"
                     /locus_tag="OQQ72_002624"
     CDS             complement(5278..7074)
                     /gene="narX"
                     /locus_tag="OQQ72_002624"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HCS2012298.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            7413..8804
                     /gene="narK"
                     /locus_tag="OQQ72_002625"
     CDS             7413..8804
                     /gene="narK"
                     /locus_tag="OQQ72_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HCS2012299.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            9320..13042
                     /locus_tag="OQQ72_002626"
     CDS             9320..13042
                     /locus_tag="OQQ72_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS2012300.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            13060..14598
                     /gene="narH"
                     /locus_tag="OQQ72_002627"
     CDS             13060..14598
                     /gene="narH"
                     /locus_tag="OQQ72_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS2012301.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            14595..15305
                     /gene="narJ"
                     /locus_tag="OQQ72_002628"
     CDS             14595..15305
                     /gene="narJ"
                     /locus_tag="OQQ72_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS2012302.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEVIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            15305..15982
                     /gene="narI"
                     /locus_tag="OQQ72_002629"
     CDS             15305..15982
                     /gene="narI"
                     /locus_tag="OQQ72_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HCS2012303.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFAGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
BASE COUNT         3894 a         4040 c         4331 g         3896 t
ORIGIN      
        1 ctcaattcat cttcacttca tccctgaaat gtttgcaata aagagtacat tccggctttt
       61 caacagctgt tgcagtggtt tcgtgcaggt tgtggtacag gctcgcaatt ctgattaacg
      121 agctgtccag gtagtatgaa gaaatacaat aagcaggaat ttatcttatc tcccccgatt
      181 tccgtcatcg gaggagatat aactgtcagg caaatatcgt catcaaatag gcggcaaaca
      241 gtgccagatg cgctgcgcca ttgagcacgt tagtacgtcc ggtggagaag gagatatggc
      301 acagcactaa agaggccacc atcaccacca tttctggcgc accaagtgca aactgtaatt
      361 cgttacccgt cataaaggca attagcgtga cgacaggtac ggtaagtgaa atggttgcta
      421 acactgaacc aaagaacaga ttcatcgcgc gctggacctg gttgttcaac actgctttta
      481 acgcacctaa accttccggc gacagaatca acagagccac caggaagcca gtaaaggcga
      541 caggggcatt catgctgtcg agcaatgtct ccagcgggct ggcattcatt ttggtgactg
      601 caataacggc aatcagatgg ataatcaacc agatagcatg ccacacgctg ctatgggcag
      661 acggtttacc gtgatgcggg tcgtcgtcat cactgtcatc ttcgtgctcg tagacaaaca
      721 aactttgatg cgttttggtc tggatcagca aaaatacgcc atacattgcc gcagaaatta
      781 atgctaccag taacgcctga ccggttgaaa aattcgccgc aggcagagcc attggaaata
      841 ccagtacgat tatcgccagg gggaacagcg caattaaata ctgcttgata ccaaacagat
      901 tcatatattg ggtggcaaac ttacgaccgc ccaacaataa tgaaaagcca accagcccac
      961 cggtaacaat cataatgatt gaatagagcg tatcacgcat tagcgttggc gcggcgtcgc
     1021 cggttgccat taaagctgaa atcaaactga cttcaagaat aaccactgaa aggctaagaa
     1081 taagcgaacc gtaaggttct cccaggcgat gggctaatac gtccgcatga cggacaacac
     1141 taaaggcgct acttaaaata ccaataagcg caagaagatt gatggcaatg accactggta
     1201 gtgtctggct gcttccccac aggaacagca ctaccagcgc cagaaccggg aaaataagcg
     1261 aaatctcctt gtggcgggtt tttaccgcct cttgagcatt tgacattatg gttatccctt
     1321 tgcagatgaa tttatcgaaa atgtaaaaaa taggtaggaa aaataacaga aagtgtctgg
     1381 atatcggtaa cattttacga atttttaccc cactgtcgat tttttactca ttgggacata
     1441 aaaataagta ttacgtttag acaatgtttg ttttagcgtt tcttaagaac agtctgacat
     1501 gaaaattctt atgttttggc aagagtagat attgttgacc acacttaatg ttcaactttg
     1561 taaaaggagt caacgatgcc gtataaaacg aaaagcgatc tgccggaaag cgtaaagcac
     1621 gttctaccgt ctcatgccca ggatatctat aaagaagcgt tcaacagcgc atgggatcaa
     1681 tataaagata aagacgatcg gcgtgatgac gccagtcgcg aagaaaccgc gcataaagtg
     1741 gcctgggctg ctgtgaagca tgaatatgcc aaaggggatg atgataaatg gcataaaaaa
     1801 tcgtaaaacc ggtagcttag ttaaagctat tcgtgcggtg ttgccttgca agtggtccgt
     1861 ggattgcata ttgtcccgtt agtggtttca aaatgagcag taaaaatgtc cggaagacac
     1921 caaaaagttg tcgcagggaa gtatgcagtg gcggaggtgt aaggtgataa cgcgtgattt
     1981 cttgatgaat gccgattgta aaacggcatt tggtgccatt gaagaatcac tcttatggtc
     2041 agcagagcaa cgagcggctt cgctggcggc gacgctggct tgtcgacctg atgagggacc
     2101 ggtgtggatc ttcggttatg gatcgttgat gtggaatccg gcactggagt ttaccgagtc
     2161 gtgcaccggt acactggttg gatggcatcg cgcgttttgc ctgcgcctga ccgccgggcg
     2221 cgggactgcg caccagccgg gacggatgct tgcactgaaa gagggcggac gcactacagg
     2281 cgtcgcctat cgactgccag aagagacgct ggagcaggaa ctaaccctgt tgtggaagcg
     2341 cgagatgatt accggctgtt atctgccaac ctggtgtcag cttgatcttg atgatggatg
     2401 cacagtaaac gccattgtgt ttattatgga cccgcgacat ccagaatatg aatctgacac
     2461 tcgcgctcag gtcatcgcgc cgttgattgc ggcggcgagc ggtccgctgg gaaccaacgc
     2521 acaatacctg ttttcactgg aacaggagct tatcaaactg ggaatgcagg acgatgggct
     2581 gaatgatttg ctggtatcgg taaaaaaact gctggcggag aattatccgg atggtgtgtt
     2641 acggccggga ttcgcctgag taaacttccc gcatagtggg gcgtcagacg ccccctcaaa
     2701 cattaaaatg tgagcacttt atcggctgac agcgtccatt gcgccagttc cacaagagta
     2761 ccgatttcca ccccatcaat cagaggaagt gtactaatcc cgcgcccgtc ggtacaggtt
     2821 ttgcacaatt tcaccggtac attctgagcg gtaaggatct ccagcatttg ctgaatgttg
     2881 tagccttccc ctggtttttg cccgcgcaac ccggctgtga ccgcatcaga catgaggaac
     2941 agacgcagat ccagattgct ctcctgctct cgtaacgcaa tggccagccg caagctgtta
     3001 aacaaggatt cgctcccgta aggtgcgcca ttggcaacga tcacgatttt ttgcattatt
     3061 tactcctgta ttcagggaat tagacactca tcttctatct tactgcttct gcagcgtctg
     3121 accaatcggt cacattttta aggattttcc tgaaagcgcg agaaaatacg acaaaagttg
     3181 ccagtaatcg ttattcttta aggctatggt tttcattatt accggaagtt accgacgttt
     3241 tgagccgttt cgttcctcgc attatcccgt tttatttact cttgcttgta gcaggcggta
     3301 cagctaacgc acaatctacc ttcgagcaaa aagcggcaaa tccctttgat aataacaatg
     3361 atggtctgcc ggatttaggc atggctcccg aaaatcatga tggggaaaaa cactttgctg
     3421 aaattgtgaa agatttcggc gaaaccagta tgaatgataa cgggctggat actggcgagc
     3481 aggcaaaagc tttcgcattg ggaaaagtcc gcgacgcgct tagtcaacag gttaatcagc
     3541 acgtagagtc ctggctatca ccgtggggaa atgccagtgt tgacgtcaaa gtggataacg
     3601 aaggacattt caccggcagt cgtggaagct ggtttgtgcc gttacaagat aatgatcgtt
     3661 atttcacctg gagccagctt ggtcttactc agcaggataa tgggttggtg agcaatgtgg
     3721 gcgttgggca acgctgggcg cgtggcaact ggctggtggg ttataacact ttttatgaca
     3781 acttgctgga cgaaaatctt cagcgagcgg gctttggtgc cgaagcgtgg ggcgaatatt
     3841 tgcgattatt ggcaaacttt tatcagccgt ttgctgcatg gcatgaacag acagccacgc
     3901 aggaacaacg gatggcgcgc gggtacgacc tgacagctcg gatgcgcatg ccgttctatc
     3961 aacacctcaa taccagtgtc agcctagaac agtattttgg tgatcgtgtt gatttgttta
     4021 actctggtac gggttatcac aatcccgtcg cgttgagtct gggattaaat tacacccctg
     4081 tgccattagt cactgtgacg gctcagcata aacagggtga aagtggcgag aatcaaaata
     4141 acctcgggct gaatcttaat taccgctttg gtgtaccgct caaaaaacaa ctttctgcgg
     4201 gcgaggttgc cgaaagtcag tcgttacgtg gtagtcgcta tgacaatccg cagcgaaata
     4261 atctaccgac tcttgagtac cgacagcgaa aaacgttaac ggtgtttctg gcgacaccgc
     4321 cgtgggatct aaaacctggc gaaacagtgc cgctgaaatt acaaatccgc agtcgttacg
     4381 gtattcggca actgatttgg cagggcgata cgcagatatt aagtttgacg ccgggcgcac
     4441 aagccaacag cgcggagggc tggacgctga tcatgcctga ctggcagaac ggggaagggg
     4501 caagcaatca ctggcgattg tcggtggtgg tggaatataa ccaggggcag cgtgtctcct
     4561 ccaatgagat cacgctaacg cttgtcgaac cgttcgatgc attgtcaaac gacgaactgc
     4621 gctgggaacc gtaatcagaa aatgcgctcc tgatgcaccc ataccgctgc ttccacgcga
     4681 gacttgagct tcattttctt cagcatgtgc ttgacgtgca cttttactgt gctttcggtg
     4741 atatccaggc ggcgggcaat catcttgttc ggcaaaccct gggcaatcag cttgagaata
     4801 tcgcgctcgc gtggggttaa ctggttaaca tcgcgctcag tagtggcacg gttagcgcgc
     4861 aagctggcgg ccagaacagg cgttaatgct tcgcttaata ccatttcgcc agcagctgcc
     4921 tgatgcaatg ctttcagcag atcttccggt tccatatctt ttaacagata accatccgcg
     4981 ccgcgtttca gtgcggtgac cacatcttct tcatggttag agacgctgaa taccacaatg
     5041 cgccctgaga gggacttttc gcgcagttta tccagcgttt ccagaccgtt catgccgggc
     5101 atattgagat ctaacaggat cagatcggga tcaagagact ccgccagttc aataccctgt
     5161 tcgccattac tcgcttcgcc aaccacggtg atatctggtg ccatactgat aagctgtttt
     5221 acgccagttc gcagcatcgg gtgatcgtcg atcagcagga tagtagccgg ttcctgatta
     5281 ctcatgggta tctccttgga cgtctgtgaa agttttttcg ggaataaagg tgaccaccac
     5341 ttcggtgcca cctgattcac gacggcggac gcggcaatcg cctcgtaaac tttgcgcacg
     5401 gtcgcgcatt attatcatgc cgtagtgatt gctgcggatg gcattttcag gcacgccgca
     5461 gccgttatct tggacggtca gtttgacctg attatcgttt tgcgccaccg tcaccacgac
     5521 ctcactcgct tgcgaatgtt tgagggcgtt acttaatgcc tcacgggcaa tttgcaacaa
     5581 gtggattgcc tgatgtgaag gcaccagacg aggcggcaat tgataatcca gcttcaccgg
     5641 gaagccaaat ttggcgctgt actcttcgca actcgcctcc agcgccggac gtaatccagg
     5701 ctcggtgagc tgcaagcgga atgtggtgag caattcacgc aactgcgccc aggatgcatt
     5761 cagttcgtta cggatctgac ttaacagttc gcggctgctt gctggcagcg catcgccctg
     5821 catctgtaaa caactcacct gcatcttcat gcaagagaga gattgggcaa tagaatcatg
     5881 cagttcgcgc gcaatggtgg cacgctcttc catcacgatc aactgttgct gacgttcctg
     5941 atggcgatcc agcgccagcg tggcggtgag ttgttcaacc agggtatcca ccagttgttg
     6001 ttgatcatgg ctaagatgac gcccctgcgg cagggtcgcc agcaaaatac cgtactgcgt
     6061 atgagagtca gccagccgcc acttcagggt tgtgccgcga tcaccaacgg gtaatacgcc
     6121 gcgcgggcag agctggcagc ctttatcatc acaagtcata tctggctggc aggtaaactc
     6181 ctgatgattc tcttcatcat cagtgtcata cacccgcagt tcgatatcac gtagcagggt
     6241 taaattctgt aagccgttga gtacaggtga caggcgttca cacagcgggg cgcgggaatg
     6301 caaacggcgg ttagcctgcc ataaaaaaga gaggatctga tttttatgct ccagcccggc
     6361 ggttttctcc tgaacccgct gctcaagtac ggcataactt tcggccagtt ctgcagacat
     6421 attgttcaat gcagttccaa gcatcgccat ttcgttgcgc ccgctgatgt tcgcgcgttg
     6481 ggtaaaatcg cgatgactga cggcactcgc cattgccagc agttgccgcc acggttgtag
     6541 cagtcgcgcc cgcaaccaga taatagtgaa caccagtaaa agtgccataa ataccgccat
     6601 tacccgatgg accagtacca ctgtctcaat gcgcatttcc gtggtgcggt caaaaccaga
     6661 taccagctga tcaagcccgg caacaaactg gctgacatcc gctgacaccg tttcgcggtt
     6721 ttgtgcacgc atcagtgcag ggatcagttc attacgccag taatcttgta aaccctgtaa
     6781 ttgcgccagt tgttcgtctc gttctgctgc tcgagttaac tcggcgctaa atgccgtttg
     6841 ttccatctct ttaattaagg gcttgtcttt ctcacttaat ggcactgccg ccaacagacg
     6901 gtaactttgc atgcgcagcg atcccgcttt gttgatcgca tgggcgctgc cctgaacgcc
     6961 ttgcaccagc cagccagaaa ccgccatccc tgccagtcca atagcagtag aaagcaacac
     7021 aataagcgca acctgattaa ccagggtgag cggagagaga caacgtttaa gcatgtaaac
     7081 ctcttccttc aggctttaaa tgagcaataa ccttaatgaa tgtgacgata cattctggaa
     7141 tggcagtatt ctcggctatt ggctgaagta tacccatacc cggaaagagt tactccttat
     7201 ttgccgtgtg gttagtcgct ttacatcggt aagggtaggg attttacagc accgtgaaaa
     7261 atctcataat ttttatgaaa tcactgtact cactatgggt aatgataaat atcaatgata
     7321 gataaagtta tcttatcgtt tgatttacat caaattgcct ttagctacag acactaaggt
     7381 ggcagacatc gaaacgagta tcagaggtgt ctatgagtca ctcatccgcc cccgaaaggg
     7441 ctactggagc tgtcattaca gattggcgac cggaagatcc tgcgttctgg caacaacgcg
     7501 gtcaacgtat tgccagccgt aacctgtgga tttccgttcc ctgtctgctg ctggcgtttt
     7561 gcgtatggat gttgttcagc gctgttgcgg tgaacttacc gaaagtcggt tttaatttta
     7621 cgaccgatca gctatttatg ttgactgcgc tgccttcggt ttctggcgcg ttattacgtg
     7681 ttccatactc ctttatggtt cctatcttcg gtggtcgtcg ctggacggcg ttcagcaccg
     7741 gtattctgat tattccttgc gtctggctgg gttttgccgt gcaggatacc tccacgcctt
     7801 atagcgtctt catcatcatc tctctgctat gcggctttgc tggcgcgaac ttcgcatcca
     7861 gtatggcaaa catcagcttc ttctttccga aacagaagca gggtggcgcg ctgggtctga
     7921 atggtggtct gggaaacatg ggcgtcagcg tcatgcagtt ggttgctccg ctggtggtat
     7981 cactgtcgat tttcgcagta tttggtagcc agggcgtcaa acagccggat gggactgagc
     8041 tgtatctggc gaatgcgtcc tggatatggg tgccgttcct tgccatcttc accattgcgg
     8101 cgtggtttgg catgaacgat cttgctacct cgaaagcctc catcaaggag cagttgccgg
     8161 tactcaaacg gggtcatctg tggattatga gcctgctgta tctggcaacc ttcggctcct
     8221 tcatcggctt ctccgcgggc tttgcaatgc tgtcaaaaac gcagttcccg gatgttcaga
     8281 ttctgcaata cgctttcttc gggccgttta ttggtgcgct ggcgcgttct gcaggtggtg
     8341 cattatctga ccgtctgggc ggaactcgtg tcacgctggt gaactttatt ctgatggcga
     8401 ttttcagcgg cctgctgttc ctgaccttac cgactgacgg gcagggcgga agcttcatgg
     8461 cgttcttcgc ggtcttcctg gcgctgttcc tgacagctgg gctgggtagt ggttccactt
     8521 tccagatgat ttcagtgatc ttccgtaaac tgacaatgga tcgcgtgaaa gcagaagggg
     8581 gttctgacga acgtgcgatg cgtgaagcgg caaccgacac ggcggcggcg ctgggtttca
     8641 tctctgcgat tggcgcgatt ggtggcttct ttatcccgaa agcgtttggt agctcgctgg
     8701 cattaacggg ttcgccagtc ggcgcaatga aggtattttt gattttctat atcgcctgcg
     8761 tagtgattac ctgggcggta tatggtcggc attctaaaaa ataaaccgtt actcgtcata
     8821 ctccgggtta catgtgctgc ggctgcgttc attcacccca gtcacttact ttagtaagct
     8881 cctgggattc attcacttgc cgccttcctg taaaccgaat tatatagagt aaaatatttg
     8941 attatccttt gcgcggcatg atgtcgcgct ttttttaagc gttatttagt tacaacatac
     9001 taatgttata tggtttattt cgccggattt cattaagagc cattaatatg ttacccatgg
     9061 ggaatactcc ttaataccca tctgcataaa aatcttaata gtttaaataa ctacaggtat
     9121 aaaacgtctt aatttacagt ctgttatgtg gtggctgttg attatcctaa aggggtatct
     9181 taggaattta ctttattttt catccccatc actcttgatc gttatcaatt cccacgctgt
     9241 ttcagagcgt taccttgccc ttaaacatta gcaatgtcga tttatcagag ggccgacagg
     9301 ctcccacagg agaaaaccga tgagtaaatt cctggaccgg tttcgctact tcaaacagaa
     9361 gggtgaaacc tttgccgatg ggcatggcca gcttctcaat accaaccgtg actgggagga
     9421 tggatatcgc cagcgttggc agcatgacaa aatcgtccgc tctacccacg gggtaaactg
     9481 caccggctcc tgcagctgga aaatctacgt caaaaacggt ctggtcacct gggaaaccca
     9541 gcagactgac tatccgcgta cccgtccgga tctgccaaac catgaacctc gcggctgccc
     9601 gcgcggtgcc agctactcct ggtatcttta cagtgccaac cgcctgaaat acccgatgat
     9661 gcgcaaacgc ctgatgaaaa tgtggcgtga agcgaaggcg ctgcatagcg atccggttga
     9721 ggcatgggct tctatcattg aagacgccga taaagcgaaa agctttaagc aggcgcgtgg
     9781 acgcggtgga tttgttcgtt cttcctggca ggaggtgaac gaactgatcg ccgcatctaa
     9841 cgtttacacc atcaaaaact acggcccgga ccgtgttgct ggtttctcgc caattccggc
     9901 aatgtcgatg gtttcttacg catcgggtgc acgctatctc tcgctgattg gcggtacttg
     9961 cttaagcttc tacgactggt actgcgacct gcctcctgcg tctccgcaaa cctggggcga
    10021 gcaaactgac gtaccggaat ctgctgactg gtataactcc agctacatca tcgcctgggg
    10081 ttcaaacgtg ccgcagacgc gtaccccgga tgctcacttc tttactgaag tgcgttacaa
    10141 aggcaccaaa actgttgccg tcacaccaga ctacgctgaa atcgccaaac tgtgcgatct
    10201 gtggctggca ccgaaacagg gcaccgatgc ggcaatggcg ctggcgatgg gccacgtaat
    10261 gctgcgtgaa ttccacctcg acaacccaag ccagtatttc accgactatg tgcgtcgcta
    10321 caccgacatg ccgatgctgg tgatgctgga agaacgcgac ggttactacg ctgcaggtcg
    10381 tatgctgcgc gctgctgatc tggttgatgc gctgggccag gaaaacaatc cggaatggaa
    10441 aactgtcgcc tttaatacca atggcgaaat ggttgcgccg aacggttcta ttggcttccg
    10501 ctggggcgag aagggcaaat ggaatcttga gcagcgcgac ggcaaaactg gcgaagaaac
    10561 cgagctgcaa ctgagcctgc tgggtagcca agatgagatc gctgaggtag gcttcccgta
    10621 ctttggtggc gacggcacgg aacacttcaa caaagtggaa ctggaaaacg tgctgctgca
    10681 caaactgccg gtgaaacgcc tgcaactggc tgatggcagc accgccctgg tgaccaccgt
    10741 ttatgatctg acgctggcaa actacggtct ggaacgtggc ctgaacgacg ttaactgtgc
    10801 aaccagctat gacgatgtga aagcttatac cccggcctgg gccgagcaga ttaccggcgt
    10861 ttctcgcagc cagattattc gcatcgcccg tgaatttgcc gataacgctg ataaaacgca
    10921 cggtcgttcg atgattatcg tcggtgcggg gctgaaccac tggtatcacc tcgatatgaa
    10981 ctatcgtggt ctgatcaaca tgctgatttt ctgcggctgt gtcggtcaga gcgggggcgg
    11041 ctgggcgcac tatgtaggtc aggaaaaact gcgtccgcaa accggctggc agccgctggc
    11101 gtttgccctt gactggcagc gtccggcgcg tcacatgaac agcacttctt atttctataa
    11161 ccactccagc cagtggcgtt atgaaaccgt cacggcggaa gagttgctgt caccgatggc
    11221 ggacaaatcc cgctataccg gacacttgat cgactttaac gtccgtgcgg aacgcatggg
    11281 ctggctgccg tctgcaccgc agttaggcac taacccgctg actatcgctg gcgaagcgga
    11341 aaaagccggg atgaatccgg tggactatac ggtgaaatcc ctgaaagagg gttccatccg
    11401 ttttgcggca gaacaaccag aaaacggtaa aaaccacccg cgcaacctgt tcatctggcg
    11461 ttctaacctg ctcggttctt ccggtaaagg tcatgagttt atgctcaagt acctgctggg
    11521 gacggagcac ggtatccagg gtaaagatct ggggcaacag ggcggcgtga agccggaaga
    11581 agtggactgg caggacaatg gtctggaagg caagctggat ctggtggtta cgctggactt
    11641 ccgtctgtcg agcacctgtc tctattccga catcattttg ccgacggcga cctggtacga
    11701 aaaagacgac atgaatactt cggatatgca tccgtttatt cacccgctgt ctgcggcggt
    11761 cgatccggcc tgggaagcga aaagcgactg ggaaatctac aaagccatcg cgaagaaatt
    11821 ctccgaagtg tgcgtcggcc atctgggtaa agaaaccgac atcgtcacgc tgcctatcca
    11881 gcatgactct gccgctgaac tggcgcagcc gctggatgtg aaagactgga aaaaaggcga
    11941 gtgcgacctg atcccaggta aaaccgcgcc acacattatg gtcgtagagc gcgcttatcc
    12001 ggcgacttac gaacgcttta cctctatcgg cccgctgatg gagaaaatcg gtaatggcgg
    12061 taaagggatt gcctggaaca cccagagcga gatggatctg ctgcgtaagc tcaactacac
    12121 caaagcggaa ggtccggcga aaggccagcc gatgctgaac accgcaattg atgcggcaga
    12181 gatgatcctg acactggcac cggaaaccaa cggtcaggta gccgtgaaag cctgggctgc
    12241 cctgagcgaa tttaccggtc gtgaccatac gcatctggcg ctgaataaag aagacgagaa
    12301 gatccgcttc cgcgatattc aggcacagcc gcgcaaaatt atctccagcc cgacctggtc
    12361 tggtctggaa gatgaacacg tttcttacaa cgccggttac accaacgttc acgagctgat
    12421 cccatggcgt acgctctctg gtcgtcagca actgtatcag gatcaccagt ggatgcgtga
    12481 tttcggtgaa agcctgctgg tttatcgtcc gccgatcgac acccgttcgg tgaaagaagt
    12541 gataggccag aaatccaacg gcaacccgga aaaagcgctc aacttcctga cgccgcacca
    12601 gaagtggggg atccactcca cctacagcga caaccagttg atgctgacct taggtcgcgg
    12661 tggcccggtg gtctggctga gcgaagccga tgccaaagag ctgggcattg ccgataacga
    12721 ctggattgaa gtttacaaca gcaacggtgc gctgactgcc cgtgcggttg tcagccagcg
    12781 tgttccggca gggatgacca tgatgtacca cgcgcaggaa cgtatcgtta acctgccggg
    12841 ttcggaaatt actggccagc gtggggggat ccacaactcg gtcacccgta tcacgccgaa
    12901 accgacgcat atgattggtg gctatgccca tctggcatac ggctttaact actacggcac
    12961 cgtaggttct aaccgcgatg agtttgttgt agtgcgtaag atgaagaaca ttgactggtt
    13021 agatggcgaa ggcaatgact aggtacagga gagcgtaaaa tgaaaattcg ttcacaagtc
    13081 ggcatggtgc tgaatctcga taagtgcatc ggctgccaca cctgttcagt tacctgtaaa
    13141 aacgtctgga ccagccgtga aggcgtggag tacgcgtggt tcaacaacgt ggaaaccaag
    13201 ccgggtcagg gcttcccgac tgactgggaa aaccaggaaa aatacaaagg cggctggatc
    13261 cgtaaaatca acggcaaact gcagccgcgc atgggtaacc gtgccatgtt gctgggtaaa
    13321 atcttcgcta acccgcatct gccggggatc gacgattatt acgagccgtt cgattttgac
    13381 tatcagaacc tgcataccgc gccggaaggc agcaaatcgc agccgattgc ccgtccccgt
    13441 tcgctgatta ccggggaacg gatggcgaaa atcgaaaaag ggccgaactg ggaagatgac
    13501 ctgggtggtg agtttgacaa actggcgaaa gacaagaact tcgacaacat ccagaaggcg
    13561 atgtatagcc agttcgaaaa cacctttatg atgtatttgc cgcgcctgtg cgaacactgc
    13621 ctgaacccgg catgtgtggc gacctgcccg agcggtgcga tttacaagcg tgaagaagat
    13681 ggcatcgtcc tgatcgacca ggataaatgc cgtggctggc gtatgtgcat caccggatgc
    13741 ccgtacaaaa aaatctactt caactggaag agcggtaagt ctgagaagtg catcttctgc
    13801 tatccgcgta ttgaagcggg tcagccgacc gtgtgctcag aaacctgtgt cggtcgtatc
    13861 cgttatcttg gcgtgctgct gtacgatgcc gacgcgattg aacgtgcagc cagcaccgag
    13921 aacgagaaag atctttacca gcgtcagctg gaggtgttcc tcgatccgaa cgatccgaaa
    13981 gtcatcgagc aggcgattaa agacggtatt ccgctgagcg ttattgaagc cgcacagcag
    14041 tcgccggttt ataaaatggc aatggaatgg aaactggcgc tgccgctgca tccagaatat
    14101 cgcacactgc cgatggtctg gtacgtgccg cctctgtctc cgattcagtc tgcagcagac
    14161 gcgggtgagc tgggtagcaa cggcattctg ccagacgtcg aaagcttgcg tattccggta
    14221 cagtatctgg cgaatctgct gaccgccggt gataccaaac cggtactgcg cgcactgaaa
    14281 cgtatgctgg cgatgcgtca ttacaaacgt gctgaaaccg ttgacggtaa agttgatacc
    14341 cgtgcgctgg aagaggtcgg tctgaccgaa gcccaggcac aggagatgta ccgttatctg
    14401 gctattgcta actacgaaga tcgctttgtg gtgccgagta gtcatcgtga actggcacgg
    14461 gaagccttcc cggagaaaaa tggctgcggc tttacctttg gtgatggctg ccacggctca
    14521 gataccaaat tcaatctgtt caacagccgt cgtatcgatg ccatcgatgt gaccagcaaa
    14581 acggagccgc atccatgatc gaactcgtga ttgtatcgcg tctccttgaa tatccggatg
    14641 ctgccttatg gcagcatcaa caagagatgt ttgaggtgat tgctgcgtcg aaaaatctgt
    14701 cgaaagaaga tgcccatgcg ctgggcattt tcctgcgcga tttaacggcg atggatccgc
    14761 tcgatgccca ggcccagtac agcgaactgt tcgaccgtgg ccgcgccacg tcactgttgc
    14821 tatttgaaca tgttcacggt gaatcccgtg accgcggcca ggcgatggtg gacctgctgg
    14881 cgcagtacga gcagcacggc ttgcagttaa acagccgcga attaccggac catctgccgc
    14941 tgtatctgga gtacctgtcg cagctgccgc aaagcgaagc cgtggaaggt ttgaaagata
    15001 tcgcgccgat tctggcattg ctgagcgcgc gtctgcaaca gcgtgaaagc cgttatgccg
    15061 tgatgtttga tctgctgctg aaattggcca ataccgctat cgacagcgac aaagtggcgg
    15121 aaaaaattgc cgacgaagcg cgcgatgata cgccgcaggc gctggatgct gtctgggaag
    15181 aagagcaggt taaattcttt gctgacaaag gctgcggtga ttcagcaatc actgctcatc
    15241 agcgtcgctt tgccggtgcc gtcgcgccgc aatatctgaa tatcaccacc ggaggacagc
    15301 actaatgcaa ttcctgaata tgttcttctt tgatatctac ccgtacatag ccggggcggt
    15361 cttcctgatt ggtagctggc tgcgttatga ctacgggcag tacacctggc gcgcggcgtc
    15421 cagccagatg ctggatcgca aagggatgaa cctggcgtcg aacctgttcc atatcggtat
    15481 tctggggatt tttgctggtc acttcttcgg tatgctgacg ccgcactgga tgtatgaagc
    15541 ctggctgccg attgaagtga aacagaaaat ggcgatgttt gctggtggtg ccagcggcgt
    15601 gctgtgtctg attggcggcg tgctgttgct gaagcgtcgt ctgttcagcc cacgcgtgcg
    15661 tgcaaccact accggagcgg atatcctgat cctgtcgctg ctcgttatcc agtgcgcgct
    15721 gggcctgttg accattccgt tctccgctca gcatatggac ggtagcgaga tgatgaaact
    15781 ggttggctgg gcgcagtcgg tggtgacctt ccacggtggc gcttctcaac acctcgatgg
    15841 tgtggcgttt atcttccgtc tgcacctggt gctggggatg acgttattcc tgctgttccc
    15901 gttctcgcgt ctggtacaca tctggagcgt accggtggag tatctgacac gtaagtacca
    15961 gctggtgcgc gctcgtcact aaacgaattt tagttcacat agaccctgct tcggcggggt
    16021 tttttatggg cacggtgcgg ggtgagttgt cggatgcgct tcgcttatcc gacctacagg
    16081 ggaggatatt gtaggcccgg taaacgtggt gccatcgggc aaaattagct cggagtaaca
    16141 ggttttgatt attcaaggaa g
//
LOCUS       DAJVUY010000093        16101 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.093, whole genome shotgun sequence.
ACCESSION   DAJVUY010000093 DAJVUY010000000
VERSION     DAJVUY010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16101
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.093"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..312)
                     /locus_tag="OQQ72_002630"
     CDS             complement(<1..312)
                     /locus_tag="OQQ72_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HCS2012304.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN
                     GK"
     gene            complement(317..502)
                     /locus_tag="OQQ72_002631"
     CDS             complement(317..502)
                     /locus_tag="OQQ72_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HCS2012305.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(499..3138)
                     /locus_tag="OQQ72_002632"
     CDS             complement(499..3138)
                     /locus_tag="OQQ72_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HCS2012306.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL
                     PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3346..4335
                     /gene="ldhA"
                     /locus_tag="OQQ72_002633"
     CDS             3346..4335
                     /gene="ldhA"
                     /locus_tag="OQQ72_002633"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS2012307.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPANYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4446..4868
                     /gene="hslJ"
                     /locus_tag="OQQ72_002634"
     CDS             4446..4868
                     /gene="hslJ"
                     /locus_tag="OQQ72_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HCS2012308.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4865..5131)
                     /locus_tag="OQQ72_002635"
     CDS             complement(4865..5131)
                     /locus_tag="OQQ72_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS2012309.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5405..8929
                     /gene="nifJ"
                     /locus_tag="OQQ72_002636"
     CDS             5405..8929
                     /gene="nifJ"
                     /locus_tag="OQQ72_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HCS2012310.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DSYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9295..10428
                     /gene="ompN"
                     /locus_tag="OQQ72_002637"
     CDS             9295..10428
                     /gene="ompN"
                     /locus_tag="OQQ72_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HCS2012311.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10569..11003
                     /gene="uspF"
                     /locus_tag="OQQ72_002638"
     CDS             10569..11003
                     /gene="uspF"
                     /locus_tag="OQQ72_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HCS2012312.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11560..12474
                     /gene="sitA"
                     /locus_tag="OQQ72_002639"
     CDS             11560..12474
                     /gene="sitA"
                     /locus_tag="OQQ72_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000949004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HCS2012313.1"
                     /translation="MHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAK
                     NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNG
                     VPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQ
                     RNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINAD
                     QQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTEN
                     GPVPTYIDLLKVTTSTLVQGIKAGKREK"
     gene            12474..13301
                     /gene="sitB"
                     /locus_tag="OQQ72_002640"
     CDS             12474..13301
                     /gene="sitB"
                     /locus_tag="OQQ72_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HCS2012314.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13298..14155
                     /gene="sitC"
                     /locus_tag="OQQ72_002641"
     CDS             13298..14155
                     /gene="sitC"
                     /locus_tag="OQQ72_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HCS2012315.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14152..15009
                     /gene="sitD"
                     /locus_tag="OQQ72_002642"
     CDS             14152..15009
                     /gene="sitD"
                     /locus_tag="OQQ72_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HCS2012316.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
     gene            complement(15337..>16101)
                     /locus_tag="OQQ72_002643"
     CDS             complement(15337..>16101)
                     /locus_tag="OQQ72_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISSfl3 family transposase"
                     /protein_id="HCS2012317.1"
                     /translation="NGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHL
                     AKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAE
                     LYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNH
                     WNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQ
                     NEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK"
BASE COUNT         3997 a         4091 c         3888 g         4125 t
ORIGIN      
        1 tttaccgttt atcccttgta catattcccc cggtttggcc cgagctacga gcttttgccc
       61 ggcgagtttc gcgatatcat ctacagacac attattttgc tttgccagtt gttggtaact
      121 cgctttacgt tcggcattaa tgtcggttac taatttctct gtttcagcat ccgttttcag
      181 cgcaaccaga taaccataaa atgtttcccc gacccgcccc tgcgttctgg cttcatccag
      241 agtcaatgcc attacattgc tgcttaccag cccaacaaga aacgcacaaa gaagtaatgt
      301 tttcttcatc atcgcctcag taaagatcgc tacgagtttc aagcagctct tcgacatctt
      361 tgtctgcctt gatgatgatc tcatgctcaa ttttaacgtt catattgata gtgatcggtt
      421 ccttgggcgc agcgacttca atacgcggcg tacaggcagc cagcataaaa gatgacgtca
      481 acgcagccag taaaattttc attgtttttc ctcacactct tttccttgcg gacagtcatt
      541 tcccggcaga cgtgcgttct gctccaacca tgcctggaga ttatcgccaa agcgtaaact
      601 gcgccacagc gtaaaaatat tctcttcatg atggtaatta aggtttaccg taccgctttt
      661 accatcaacg cgactggtac ctgtaatgtt ggcctgcatg gttaataaac cgagattatc
      721 taaattaata tttgtcgatg aacggctaat ttccatatag cgcaaccagt taattgctga
      781 acccgcagtc atattgtctt tcaccaccgc atctgcggtg tctttatcca gccgcaaggt
      841 cattggcccg ctatttgcca gccaaccatc tttcactatc catttttcgt tgtttagcca
      901 taacggcaat gcaccactaa atgccccgga catggcgaat tgtttcggat tgacggcgct
      961 aaccagttcg ctggatgaga gattattcag ccgcaacagc gccgggtcat gttgcggcat
     1021 acgtaattgt ttcatcagta cgttaccgcc taacacatcg acgctaacat cagtcaacag
     1081 caagggttct tcttcagtcc acggataacg cccttgcaaa tcagccgtaa tatttttcgc
     1141 tgtcaccaga ttaatcactt cggcaattcg caacgtaacg gggccgcgag tccccagatg
     1201 ccaggctcca tcggcaaaac ggaaaggcag gacaaaatcg acaccgttaa cctgattatc
     1261 tggcatccag gcactaccgc ctttcaacac gccgtgccct cccgcgcgga atccttgttc
     1321 aggcgcagca gaaaatgcaa cctgagcata cagttcacca tcgcgtaagt tcatcttcca
     1381 gtcgggtggc accagcggct ggaatacagt cagtgattgt tttggccacc aggcgttacc
     1441 gcgcagacga ataccgtccc agcgaccatt tacccgaacc gggccaatct caccagcatg
     1501 taaatcgcct ttaaagagga aatacgtcgg atcgcgccca tcgacgctaa attttaaggt
     1561 tgatggcggt aacacactgc cgccagtgaa cagcgtttgc ccggcgtcca gtgacagcgc
     1621 gccgctgaag gagggatgct gtgcgtcacg tacccagacg acgggcttgt ccagaattaa
     1681 tcgcggcttt tctaccgtca tcgtaccgta ttgtaactgg tcgaaaccgg tggagaggtc
     1741 ggtcagcgta atcgtgctgt catgccattc accttttcct gcgacatccc aggtggcatt
     1801 catcggtgta aaactgcctt ttccccagta gcgccactgc cagcggcccg cgtcagggag
     1861 aaaatcattc gccagcccat ccatatgcag cacgaaatcg cccagttcat tttcatgcgc
     1921 ctgcaaaatg gcctgcaaac gtccgtcaac accacgttgg gtgactttta cacccgctaa
     1981 aggccagcgg atttcatcga tgtccagcga atcgatgact cttccctttg aacgaagtaa
     2041 cgcgcctggc tcaaaggcca gcgttgggtc agtcagactt ccacttagct gcgcgggtaa
     2101 gcgggcatat aaaatgaggt ccgcctgttt cgcttcaccg gtcagctgca gaggcagctg
     2161 gctgttatcc atgcttaatt ttcctgggcc aaaatttagc accgcgttgc ctttacccgc
     2221 ttgcccctgg gtcagcacac tcagtcgtcc gctgatcaga gcgttctcaa gccctgcctg
     2281 ccagttgtcg actttgacac ccagtcggcc actcaaagga aaacctgcat acggccaact
     2341 ccagcgacca tcgcttacgg tcaattgttg acgagtaatt tgccacggca aatcgagcaa
     2401 cggatcgccg ttatcacgtg ccagcacaat caattgcccg ctattttcct gccagtccag
     2461 ctctgcatcc accagtgacg gttcctgcgg caagtttaac gtcgcagtag catgcccact
     2521 tacaggaagt ccatccggca cgagcggcat agtaaattcc cccaccagtt taaccggcgg
     2581 ctgatattca aacgcgatga catccagttc gctgactgta agttgttgcc ctttcagctg
     2641 gccttgaaat ttaacttttt cgccctgata acgcagttgc tggatatcag aggttaatgc
     2701 gagagagagt tttccctgcc attcctgcca gggagaaaaa atcagtttat cgatattgat
     2761 ccaggtgtta ggcagcatgg actgccactg cgcgagggtt tttggagcag ctggcgattg
     2821 ctccgtctgc ggcaatttcg ccagacaagc agaatcaagt tctaccgtgc cgacgttcaa
     2881 taaccagcgg ctgggatgtg aaaggctggc gttggtgata tgtgcaagct gacaatctcc
     2941 caccagataa cggagatcgg gaatgattaa acctttacgc gtaatgcgtg ggctttcatc
     3001 taatgcaata cgtgtcccga gcggtagcca gatgcccgcc agcgtgggaa cccacagccc
     3061 gagcgtcatc agcagcgtca acggcacaag aataatcagt aataacagcg cgagaacggc
     3121 tttatattta cccagcatgg gtagttaata tcctgattta gcgaaaaatt aagcattcaa
     3181 tacgggtatt gtggcatgtt taaccgttca gttgaaggtt gcgcctacac taagcatagt
     3241 tgttgatgaa tttttcaata tcgccatggt tttcaattat atttgaaatt ttgtaaaata
     3301 tttttagtgg cttaaatgtg attcaacatc actggagaaa gtcttatgaa actcgccgtt
     3361 tatagcacaa aacagtacga caagaagtac ctgcaacagg tgaacgagtc ctttggcttt
     3421 gagctggaat tttttgactt tctgctgacg gaaaaaaccg ctaaaactgc caatggctgc
     3481 gaagcggtat gtattttcgt aaacgatgac ggcagccgcc cggtgctgga agagctgaaa
     3541 aagcacggcg ttaaatatat cgccctgcgc tgtgccggtt tcaataacgt cgaccttgat
     3601 gcggcaaaag aactggggct gaaagtagtc cgtgttccag cctatgatcc agaggccgtt
     3661 gctgaacacg ccatcggtat gatgatgacg ctgaaccgcc gtattcaccg cgcgtatcag
     3721 cgtacccgtg acgctaactt ctctctggaa ggtctgaccg gctttactat gtatggcaaa
     3781 acggcaggcg ttatcggtac cggtaaaatc ggtgtggcga tgctgcgcat tctgaaaggt
     3841 tttggtatgc gtctgctggc gttcgatccg tatccaagtg cagcggcgct ggaactcggt
     3901 gtggagtatg tcgatctgcc aaccctgttc tctgaatcag acgttatctc tctgcactgc
     3961 ccgctgacac cggcaaacta ccatctgttg aacgaagccg ccttcgatca gatgaaaaat
     4021 ggcgtgatga tcgtcaatac cagtcgcggt gcattgattg attctcaggc agcaattgaa
     4081 gcgctgaaaa atcagaaaat tggttcgttg ggtatggacg tgtatgagaa cgaacgcgat
     4141 ctgttctttg aagataaatc caacgacgtg atccaggatg acgtattccg tcgcctgtct
     4201 gcctgccaca acgtgctgtt taccgggcac caggcattcc tgacagcaga agctctgacc
     4261 agtatttctc agactacgct gcaaaactta agcaatctgg aaaaaggcga aacctgcccg
     4321 aacgaactgg tttaatgttg cagctcccct gcaatccagg ggagctgatt cagataatcc
     4381 ccaatgacct ttcattctct attcttaaaa tagtcctgag tcagaaactg taattgagaa
     4441 ccacaatgaa gaaagtagcc gcgtttgttg cgctaagcct gctgatggcg ggatgtgtaa
     4501 gtaatgacaa aattgctgtt acgccagaac agctacagca tcatcgcttt gtgctggaaa
     4561 gcgtaaacgg taagcccgtg accagcgata aaaatccgcc agaaatcagt tttggtgaaa
     4621 aaatgatgat ttccggcagc atgtgtaacc gctttagcgg tgaaggcaaa ctgtctaatg
     4681 gtgaactgac agccaaaggg ctggcaatga cccgtatgat gtgcgctaac ccgcagctta
     4741 atgaactcga taacaccatt agcgaaatgc tgaaagaagg tgcacaagtg gatctgaccg
     4801 cgaaccagtt aacgctggcg accgcgaaac agacattaac ttataagctg gcggatttaa
     4861 tgaattaata gctgccacag ctcccggcgg caagtgactg ttcgctacag cgtttgccgt
     4921 tgggtaatgc acacatccca atcgccgtgc catccagttg acgggcaaca gaaagcgaac
     4981 cgccgatcat tgcacaattt gcttctccac tactggacat cgacgctttt aaacctggcg
     5041 ctacgtgcgc cgcagtcgcc tgctgaacag gttcactact acacgccgac aacaataaag
     5101 cggcacaccc tacccaaaac gctgctcgca tcttttcttc ctctgatctt caagccaaac
     5161 gacaccgcca taaataatag gcagcacaga gggcgacatc gagagctgtc ctgcgcgttg
     5221 ccccgcattt ttactttttt atggctattt ttttgccctc tgtttgatca aaacattcat
     5281 tacgctgatg tgggggacac aaaagcgaaa atgcagaaga aagccatttg ctaaaattga
     5341 aagattacta ctgggcgcgc agcaatttcg tgcgcccctc atttgcgcaa tgtaagggtg
     5401 tcatatgatt actattgacg gtaatggcgc ggttgcttcg gtggcgtttc gcaccagtga
     5461 agttatcgcc atctacccta ttacccccag ttccacgatg gcagaacagg ctgatgcctg
     5521 ggccggaaac ggcttgaaga acgtttgggg agacacacca cgcgtggttg aaatgcagtc
     5581 ggaagcgggt gctatcgcta ccgtgcatgg cgctttgcag acgggtgccc tttcaacatc
     5641 gtttacgtca tcgcagggtt tgctgctgat gatcccgaca ctgtacaaac tggcaggcga
     5701 actcacaccg tttgtcctgc atgtagcggc acgtaccgtt gccacacatg cactctctat
     5761 ttttggcgat cattccgacg tcatggcggt gcgccagacg ggttgcgcga tgttgtgtgc
     5821 ggcaaacgtc caggaagcgc aagactttgc tctcatttcg cacatcgcga cgctgaaaag
     5881 ccgcgtgcca tttattcatt tctttgatgg tttccgcacg tcccacgaaa tcaataaaat
     5941 tgtcccgctg gccgatgaca cgattcttga tctcatgccg caggccgaaa ttgatgctca
     6001 tcgcgcccgg gcgctcaacc cggaacatcc ggtgatccgt ggtacgtccg ccaatcctga
     6061 ctcttatttc cagtctcgcg aagccaccaa cccctggtac aacgcagtct atgaccatgt
     6121 tgaacaggcg atgaatgatt tctctgccgc gacaggtcgt cagtatcagc cgtttgaata
     6181 ttacgggcat ccgcaagctg aacgggtgat tatcctgatg ggctcagcca ttggcacctg
     6241 tgaagaagtg gttgatgaat tgctaacccg tggcgaaaaa gtcggcgtgc tgaaagttcg
     6301 cctgtaccgc cccttctcag ccaaacactt gctacaaact ctaccgggat ccgtacgcag
     6361 cgtggcggta ctggacagaa ccaaagaacc cggtgcccag gcagaaccgc tctatctgga
     6421 tgtgatgacc gcactggcag aagcctttaa taatggcaag cgcgaaactc tgccccgtgt
     6481 cattggtggg cgctatggtc tttcatccaa agaatttggc ccggactgtg tactggcggt
     6541 atttgccgag ctcaacgcgg ctaaaccgaa agcgcgcttt acggttggta tttacgatga
     6601 tgtaaccaat ctgtccctgc cgttgccgga aaacacccag ccaaactcgg cgaaacttga
     6661 agccttgttt tatggccttg gtagtgatgg cagcgtttcc gcgaccaaaa acaatatcaa
     6721 gattatcggt aattccacgc cgtggtacgc acagggctat tttgtttacg actccaaaaa
     6781 agcgggcggc ctgacggttt ctcaccttcg cgtgagcgaa cagccgattc gttccgctta
     6841 tctcatttcc caggctgatt ttgttggctg ccaccagttg cagtttatcg ataaatatca
     6901 gatggctgag cgtttaaaac ctggcggcat tttcctgctc aacacgccgt acagcgcaga
     6961 tgaagtgtgg tcgcgcttgc cgcaagaagt tcaggccgtg ttaaaccaga aaaaagcgcg
     7021 cttctatgtg attaacgcgg cgaaaatcgc ccgcgaatgt ggcctggcgg cccgtattaa
     7081 taccgtcatg cagatggctt ttttccatct gacgcaaatt ctgcctggcg atagcgccct
     7141 cgcagaattg cagggtgcga ttgccaaaag ttacagtagc aaaggccagg atctggtgga
     7201 aggcaactgg caggctctgg cgctggcgcg tgaatccgta gaagaagttc cgttgcaacc
     7261 ggtaaatccg cacagcgcca atcgaccgcc agtggtttcc gatgccgccc ctgatttcgt
     7321 gaaaaccgta accgcagcga tgctcgcagg gcttggtgat gccctccccg tttcggcgct
     7381 gccgccagac ggcacctggc cgatggggac cactcgctgg gaaaaacgca atatcgccga
     7441 agagatcccc atctggaaag aggaactctg tacccaatgt aaccactgcg tcgccgcttg
     7501 cccacactca gctattcgcg caaaagtggt accacccgaa gcgatggaaa acgcccctgc
     7561 cagcctgcat tcgctggatg tgaaatcgcg tgatatgcgc gggcagaaat atgtcttgca
     7621 ggtggctccg gaagattgca ccggttgtaa cctgtgcgtc gaagtttgcc cggcgaaaga
     7681 ccgtcagaat ccagagatta aagccatcaa tatgatgtcg cgcctggaac atgtcgaaga
     7741 agagaaaatc aattacgatt tcttcctcaa cctgccagaa atcgaccgta gcaaactgga
     7801 acgtattgat attcgtacat cgcagctgat tacaccgctg tttgaatatt ccggtgcttg
     7861 ctccggttgt ggcgagacgc cgtatattaa attgctgact cagctctatg gcgaccggat
     7921 gttgatcgct aacgccaccg gctgttcttc aatttatggc ggtaacctgc cctctacacc
     7981 gtataccacc gatgccaacg gtcgtgggcc ggcatgggcg aactctctat ttgaagataa
     8041 tgccgaattt ggccttggtt tccgcctgac ggtcgatcaa caccgtgtcc gcgtgctgcg
     8101 tctgctggat caatttgccg ataaaatccc ggcggaatta ctgacggcgt tgaaatcaga
     8161 cgctacgcca gaggttcgtc gagaacaggt cgcagcttta cgccagcaac tcaacgatgt
     8221 tgccgaagca catgaactgc tacgtgatgc agatgcactg gtggaaaaat caatctggct
     8281 gattggtggt gatggctggg cttacgatat cggctttggc ggtctggatc atgtattgag
     8341 tttgacggaa aacgtcaaca ttctggtgct ggatacgcaa tgctattcca acaccggtgg
     8401 tcaggcgtcg aaagcgacac cgctgggtgc agtaactaaa tttggcgagc acggcaaacg
     8461 taaagcgcgt aaagatcttg gcgtcagtat gatgatgtac ggtcatgttt atgtggcgca
     8521 gatttctctc ggcgcgcagc tgaatcagac ggtgaaagcg attcaggaag cggaagcgta
     8581 tccgggacca tcgctgatca ttgcttatag cccgtgtgaa gagcatggtt acgatctggc
     8641 actcagccat gaccagatgc gccaactcac agctaccggc ttctggccgc tatatcgctt
     8701 cgatcctcgt cgtgccgatg aaggcaaact gccgctggcg ctggattcac gcccgccgtc
     8761 agaagcactg gaagaaacgt tacttcacga gcaacgtttc cgtcgtctga attcgcagca
     8821 gccagaagtg gcagaacagt tatggaaaga tgctgcagct gatttgcaaa aacgctatga
     8881 cttcctggca caaatggccg gaaaagcgga aaaaagcaac accgattaaa tgctctggat
     8941 aaggattatc caattctaaa aaaaagcccg gacgactgtt cgggcttgtc tttttatatg
     9001 ttggaaaatc agtggcaatg caatggccca acagaaaata aaatctgtga caataaaggc
     9061 atataacccg cgcagaataa cgtatagaaa attaaaagta taatttttat tttgtatgta
     9121 ttatcttcga tacattcacc agacttatta tcatttcaga agaattattt gattaaggtt
     9181 ttacttaagg cgtaacaaat gatatttatc ggctaactga acttctcctt taggatgttt
     9241 tcactccccg gaatggggat aaaaggcaaa taaaataact aaaggattta ttcaatgaaa
     9301 agcaaagtac tggcactttt aattcctgcc ctgctcgccg caggtgctgc acatgcagcc
     9361 gaagtttata ataaagacgg caacaaatta gatctgtatg gcaaagttga tggcctgcat
     9421 tatttttctg ataattcagc gaaagatggc gatcagagct atgcgcgtct gggttttaaa
     9481 ggcgaaaccc aaattaacga tcaactcact ggctacggtc aatgggaata caatattcaa
     9541 gcaaacaaca ctgaatcttc aaaaaaccag tcatggaccc gtctggcatt tgccgggctg
     9601 aaatttgcag attacggttc tttcgattac ggacgtaatt atggcgtaat gtacgacatc
     9661 gaaggctgga ccgatatgct gcctgaattt ggcggtgact cttataccaa tgcagacaac
     9721 tttatgactg gtcgagccaa tggcgtcgcg acttatcgta atactgattt cttcggtctg
     9781 gtaaatggtc tgaacttcgc ggtgcagtat caaggtaaca acgaaggagc cagtaatggt
     9841 caggaaggca ccaacaacgg acgtgatgtt cgccatgaaa acggtgacgg ctggggtttt
     9901 tccacaacat atgatttagg catgggcttt agcgctggtg cggcatacac ctcttctgac
     9961 cgcaccaatg accaggttaa ccatactgcg gcgggtggtg ataaagcaga cgcgtggact
    10021 gctgggctaa aatacgatgc taacaatatt tacctggcaa ccatgtattc agaaacgcgt
    10081 aatatgaccc cgtttggcga cagcgattat gctgtggcaa acaaaaccca gaattttgaa
    10141 gtcactgccc agtaccagtt tgattttggt ctgcgtccgg cagtctcttt cctgatgtct
    10201 aaaggccgtg acctgcacgc tgccggtggt gcagacaacc cggcaggtgt tgatgataaa
    10261 gatctggtta aatacgccga tgttggcgcg acttactatt tcaataaaaa catgtccacc
    10321 tacgttgact ataaaatcaa cctgttggat gaagatgaca gcttctacgc tgccaatggc
    10381 atctctaccg atgatattgt cgctttaggt ctggtttatc agttctaaat cctcctgccc
    10441 gctgttatgg cgggcttttt ctgcttattc ttcctccttt gatctaaatt aaaaatgtga
    10501 actccatcat tacacaaaaa gtgtcatctg gcgttacact ttatgcggat actaaaacag
    10561 gaggttttat gaacagaacg attcttgtcc ctatcgatat ttccgattca gaattaactc
    10621 aacgcgtgat tagccacgtt gaggcagagg caaagattga cgatgcagag gttcatttcc
    10681 tgacggtaat accttcactg ccctactatg cctctctggg tttagcgtat tccgcagaat
    10741 taccggcaat ggatgacctg aaagcggaag ccaaatcgca actggaagag atcattaaaa
    10801 aatttaaact gccaaccgac agagtgcatg tccatgttga ggaaggctcg cccaaagacc
    10861 gcattctgga attggcgaag aagatccccg ctcatatgat catcattgct tcccatcgac
    10921 cggatatcac cacttatctg ctcggttcca acgccgcagc tgtagtgcgt cacgcagagt
    10981 gctccgtgct ggttgtgcgc tgacactaac gcccgcacat tgctgcgggc tttttgattc
    11041 atttcgcaaa tgtgctgaca ttttcccctc taatccgtac catacacgcc actgttttta
    11101 tatcagattt cttatgctgg gcattccggc atgacgcata ctcttctgat gccatataac
    11161 gaattgagtc gcttttaaat gtcgcaaaat caagaattta gtaagaaaga acaatacaac
    11221 ctgaacaagt aagggcaaaa atcacaacta tctgactcat aagtatttta tttatttttc
    11281 aatatgttaa acattatcag cgacaacaat aagctacgat aacccactct ttttttgccc
    11341 catttttgcc atcaacaatt ttcctcataa agtcatttca aagcctaata gctgctctac
    11401 ttttttcctc aatatcatgt cgccagcagg aaacaaccta atccctgttt taggcctcaa
    11461 agctgttaat gataattatt ttcattttgt ataggttatg ctataaaaca tagccgttgc
    11521 tatgtttgtt ctaattttgc tcactatagg tactaaatta tgcactcaat aaaaaaagta
    11581 accatgctct tggggtgcct cgccctcacc tgctcgatcg catttcaggc aagtgcaact
    11641 gaaaaattca aggtcattac aacatttacc atcatcgcgg atatggccaa aaacgtggct
    11701 ggagatgctg cagaagtctc atccataacc aagcctggtg cagaaattca tgagtatcag
    11761 cctacccctg gcgatattaa acgtgcacag ggggcacaac tgattctcgc caatggtatg
    11821 aatctggaat tgtggttcca acgcttttac cagcatctca atggggttcc agaagtaatt
    11881 gtctcttcgg gtgtgacgcc agtagggatc accgaaggac cctatgaggg caaacctaat
    11941 ccccatgcat ggatgtcgcc agataatgct ctgatttacg tcgataatat tcgtgatgcg
    12001 ttgataaaat acgatccggc aaatgcacaa acctaccaac gtaatgccga tacttataaa
    12061 gccaagatta cccaaaccct tgcccccctg cgtaagcaga ttacggaact ccctgagaat
    12121 cagcgatgga tggtcaccag tgaaggggct ttttcttatc tcgcacgcga tttggggcta
    12181 aaagagcttt atctgtggcc gattaatgcc gatcaacaag gaacaccgca gcaggtacgt
    12241 aaggttgttg atatagttaa gaaaaatcat atcccggcag tctttagcga gagtacgatt
    12301 tccgataaac cagcgcgtca ggttgcgcgt gaaaccggcg cacactacgg cggtgtgctc
    12361 tatgtcgatt ccctgagcac agaaaacggc ccggtaccta cgtatatcga ccttcttaag
    12421 gttactacca gtacgctggt acagggaatt aaagccggga aaagggagaa ataatgatgc
    12481 aatctgcagg cattgtcgtt aatgatgtta ctgtcacctg gcgtaacggg cacacagcac
    12541 tgcgcgatgc atccttcaca gtaccaagtg gatctattgc cgctctggtt ggggtaaacg
    12601 gttccggaaa atcgacgttg tttaaagcga ttatgggatt tgtgcgtctg accagcggaa
    12661 agatatctgt tctgggtatt cccacgcgac aggcgctaca gaaaaacctg gttgcctacg
    12721 tccctcagtc agaagaggtt gactggtcat ttcctgtact ggtggaagat gtggtgatga
    12781 tgggccgcta tgggtatatg ggtatgttgc gtatagccaa aaagagggat cgtcagattg
    12841 tcaccgatgc gctggaacgt gtcgatatgg tggattttcg ccatcgtcaa atcggcgagc
    12901 tttccggtgg acaaaagaaa cgcgtctttc tggcgagagc gattgcacag cagggtgatg
    12961 tgatcctgct ggatgaacct tttaccggcg ttgatgtgaa aaccgaagcg aaaatcatca
    13021 gcctgttgag ggagttacgc gcggaaggca aaacgatgct tgtctcaacg cacaatctcg
    13081 gctcagtcac gacattttgc gattatacgg tcatggtcaa aggcaccgtc ctggcaagcg
    13141 ggccgacaga caccactttt acagccgaga acctggagct ggcttttagc ggcgtactgc
    13201 gccatgtcac acttaacggc tcggaagaaa gcattattac tgacgatgaa cgcccttttg
    13261 tggcacatcg accgtcagcg gtgcagaggg aagcaagatg aacgtgctac tggaaccctt
    13321 cagctatgaa tatatgctca atgcgatgtg ggtctcggca atggtcggcg gtctctgcgc
    13381 tttcctgtca tgctatctga tgctaaaagg ctggtcgctg attggcgatg cgctgtcgca
    13441 ctctattgtc ccgggtgttg cgggggcata tatgctgggg cttccgtttt ctctgggagc
    13501 cttcttttcc ggcggactgg cagcgggcag catgctgttt cttaaccaac gcacccgctt
    13561 aaaagaagat gccatcatcg gcctgatctt ctcgtccttt tttggcctgg ggctgtttat
    13621 ggtgtcattg aacccgacat ccgtgaacat tcagaccatc gtcctgggca atattctggc
    13681 aatcgatccg gcggatatcc tgcaactcac tatcattggc attctctcga tcatcgtgct
    13741 ttttttcaaa tggaaagatc ttatggtgac ctttttcgac gagaatcacg cccgtgctat
    13801 tggattacat ccgggcagat taaaaatcct cttcttcacc ctgctgtcgg tttcgaccgt
    13861 tgcggcgctg caaacggttg gtgcctttct ggtgatctgt ctggtggtga ctcccggtgc
    13921 aacagcatgg ttgttaaccg atcgttttcc ccgcctgctc ataattgctg taactattgg
    13981 cagtgtaacc agtttcctcg gcgcgtgggt cagttacttt ctggacggcg cgacaggtgg
    14041 aatcatcgtg gtggcgcaga cactgctgtt tcttttagca tttgtatttg cgcccaccca
    14101 tggacttttg gcaaatcgtc ggcgtgcgca taaagcgctg gaggatcgct catgatggca
    14161 ttattactgg agccactgca gttcaccttt atgagtcacg cactgctgat ttcactggta
    14221 gtttccatac cctgtgcgct gctgtcggtc tttctggtcc tgaaaggttg ggcactgatg
    14281 ggtgacgcga tgagtcatgc ggtttttcct ggcatcgtgc ttacctggat tctggggtta
    14341 cctctggcta caggggcatt cgtcgccgga gtattctgcg cggtggcgac gggatacctg
    14401 aaagacaaca gccgaatcaa gcaagataca gttatgggga ttgttttttc tggcatgttt
    14461 gccgcaggtc tgatcttgta tattgcaatc aaaccagacg tacatcttga ccatattctt
    14521 ttcggcgaca tgctcgggat aaccatcggc gatataatcc agacggtgat tattgccggg
    14581 ctggttacac ttgttattag cgtaaaatgg cgggattttt tgctgttcag ctttgattat
    14641 caacaggcgc aggtaagcgg tttgcatacg agatggctgc attatgggct gctgtgcatg
    14701 gtttccctga ccattgtggc gacgctgaaa gcagtaggta tcattctctc tatttctctg
    14761 ctcattgcgc ctggcgccat tgcagtactc ctgacacaac gctttcatat tgcgctccta
    14821 ctggcgactg gcatatcggt aatagtgtca atgactggtg tctggctgtc cttttttatc
    14881 gacagcgcac cagctccgac gattgtcgtc ttattcgcgg tcgtgttcat catgacgttt
    14941 accgttacca gcatcaacgc acgcacaaag ggaaacgccc atacacagga tctgttatca
    15001 cccaattagc acaatatccg aggacagcat cgtccgccag cgtccgccag cctacagaag
    15061 ttcggaaagc catggaaggt cgttgggagg aggtacgaat tctatcatgc aaaaaatacg
    15121 taaaatcgat aacgcctaga aatcattcaa tactcgcact atcgaaagtt taccagccaa
    15181 ccgcggcacg ttcctgcata cgacgtgccg cagcttctgt tattccacga taaaattcct
    15241 aaccgaattc aaatccttca gactattcag ctcttccttc agctcccgct gacggcgata
    15301 aatcgtaagc gccccgagaa gtacgtagcg taaggattat tttacagacg agaagttcca
    15361 gggcagcagt tcatgcactt ggttcgacgg ccagtcattg agcttctcga tcacttcgcg
    15421 caaccagtcc tccggctcca cttcgttctg tttgcaggtg accagcagac tgtagatgat
    15481 cgccgcactt tctcctccct tgtctgagcc gaaaaagaga taattttttc ttccaaccgc
    15541 caccgatcgt aacgcgtttt caccgatgtt gttgtctatt tccacccagc cgtcacgaca
    15601 gaactcgttc agcgcattcc agtgattcag gatatagtcg aacgccttcg ccatctccgc
    15661 atgtttcgac agcgttttcc tctgcaactg tatccagtcg tacaatgact gcatcaactg
    15721 gacgcttctg gcttttctga ctgcaagccg ttcctctgcc ggactgccac gtatctccgc
    15781 ttctatgtcg tataactctg ctatccgtct gagcgcttcc tgagtcattt ctgtcggacg
    15841 gcgcacatcc tcgtcatgga tttttcggcg ggcgtgggcc aggcacccgg cttccttcac
    15901 ccggcccgtt tcgtacagta cgttataacc tgcataggca tcagcctgca gtacgccctg
    15961 atactttgcc aggtggagct gcggatgttc tcctttgcga tctgccgaat acgcgaacca
    16021 gacggctgcc ggcagggatg aacccgcatt acgatcatcc ctgacgtata cccacagacg
    16081 acccgttttc gtctttccgt t
//
LOCUS       DAJVUY010000094        15759 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.094, whole genome shotgun sequence.
ACCESSION   DAJVUY010000094 DAJVUY010000000
VERSION     DAJVUY010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15759
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.094"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..145
                     /locus_tag="OQQ72_002644"
     CDS             <1..145
                     /locus_tag="OQQ72_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS2012318.1"
                     /translation="LGKAIDFDARTAIPFEGERHNALDDARYQAKYVSVIWQKLIPNQ
                     ADF"
     gene            210..458
                     /locus_tag="OQQ72_002645"
     CDS             210..458
                     /locus_tag="OQQ72_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase"
                     /protein_id="HCS2012319.1"
                     /translation="MARLILLTEWAKEEFSEPVPTPSTLSKYAKAGMIFPLPKKVGRR
                     WRVDPQARFVGMVNKPEVIATDHPALKRILEDGAPAKI"
     gene            436..1566
                     /locus_tag="OQQ72_002646"
     CDS             436..1566
                     /locus_tag="OQQ72_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS2012320.1"
                     /translation="MARPRKYKTNVPGLSPYFDKRNNKVYWRYRHPITGKNHGLGSID
                     QKLAETIAAEANSRLARQQMEQMLSLQEKIISDTGGSSTVTIFLNNYRKIQQERYENG
                     EIKLNTLKQKAAPLRVFDERFGTRPLDAITVKDVVSVLEEYKARGHNRMGQIFRKVLI
                     DVFREAQQTGDVPPGFNPAESAKKPQVRISRQRLTFDEWMMIYNAAEKDGYFLQRGML
                     LALMTGQRLSDICKMQFSDIRDGYLHVEQQKTGTRIAIPLALRCDKLNLTLDDVVSSC
                     RDCVLSPWLLHHHHAKGTAKRGGMVKPATLTVAFKKARDSVDYNWRANGTPPSFHEQR
                     SLSERLFREQGVDTKILLGHSNQKMTDIYNDARGKEWKKLVI"
     gene            complement(1612..2250)
                     /gene="ompW"
                     /locus_tag="OQQ72_002647"
     CDS             complement(1612..2250)
                     /gene="ompW"
                     /locus_tag="OQQ72_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HCS2012321.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTAKYKSGVTTVKDSVRLDPWVFMFSAGYRF"
     gene            2490..2579
                     /locus_tag="OQQ72_002648"
                     /pseudo
     CDS             2490..2579
                     /locus_tag="OQQ72_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            2607..3350
                     /locus_tag="OQQ72_002649"
     CDS             2607..3350
                     /locus_tag="OQQ72_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HCS2012322.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            3380..3919
                     /locus_tag="OQQ72_002650"
     CDS             3380..3919
                     /locus_tag="OQQ72_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HCS2012323.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            4024..4422
                     /gene="yciA"
                     /locus_tag="OQQ72_002651"
     CDS             4024..4422
                     /gene="yciA"
                     /locus_tag="OQQ72_002651"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HCS2012324.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(4462..5190)
                     /gene="tonB"
                     /locus_tag="OQQ72_002652"
     CDS             complement(4462..5190)
                     /gene="tonB"
                     /locus_tag="OQQ72_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HCS2012325.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDVKPVESRPASPFENTALARLTSSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSGIVVNILFKINGTTEIQ"
     gene            5405..5701
                     /locus_tag="OQQ72_002653"
     CDS             5405..5701
                     /locus_tag="OQQ72_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415767.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HCS2012326.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            6001..7254
                     /gene="kch"
                     /locus_tag="OQQ72_002654"
     CDS             6001..7254
                     /gene="kch"
                     /locus_tag="OQQ72_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HCS2012327.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCLAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(7309..7482)
                     /locus_tag="OQQ72_002655"
     CDS             complement(7309..7482)
                     /locus_tag="OQQ72_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HCS2012328.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            7625..9085
                     /gene="cls"
                     /locus_tag="OQQ72_002656"
     CDS             7625..9085
                     /gene="cls"
                     /locus_tag="OQQ72_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HCS2012329.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL"
     gene            9120..9449
                     /locus_tag="OQQ72_002657"
     CDS             9120..9449
                     /locus_tag="OQQ72_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HCS2012330.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPVEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(9502..10506)
                     /gene="oppF"
                     /locus_tag="OQQ72_002658"
     CDS             complement(9502..10506)
                     /gene="oppF"
                     /locus_tag="OQQ72_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HCS2012331.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(10503..11516)
                     /gene="oppD"
                     /locus_tag="OQQ72_002659"
     CDS             complement(10503..11516)
                     /gene="oppD"
                     /locus_tag="OQQ72_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HCS2012332.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTLGRLCACFKPVE
                     ELL"
     gene            complement(11528..12436)
                     /gene="oppC"
                     /locus_tag="OQQ72_002660"
     CDS             complement(11528..12436)
                     /gene="oppC"
                     /locus_tag="OQQ72_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HCS2012333.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            complement(12451..13371)
                     /gene="oppB"
                     /locus_tag="OQQ72_002661"
     CDS             complement(12451..13371)
                     /gene="oppB"
                     /locus_tag="OQQ72_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HCS2012334.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            complement(13457..15088)
                     /gene="oppA"
                     /locus_tag="OQQ72_002662"
     CDS             complement(13457..15088)
                     /gene="oppA"
                     /locus_tag="OQQ72_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HCS2012335.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            15372..15668
                     /locus_tag="OQQ72_002663"
     CDS             15372..15668
                     /locus_tag="OQQ72_002663"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012336.1"
                     /translation="MRFLLANTFCKIVKQFSFIDRIRIYSLHPCLNKHLSIQSNRDWL
                     SMSIFSDYSFSIEMHNNLTIDYYLALSSTKGSGITNIISIILQQAQDYDVAKIT"
BASE COUNT         4056 a         3824 c         3703 g         4176 t
ORIGIN      
        1 gctggggaaa gccatagact tcgatgccag aacggctatt ccattcgaag gtgagcgcca
       61 taatgcactt gatgacgccc gttaccaggc aaaatacgtt tcagttatct ggcaaaaact
      121 gatcccgaat caggctgatt tttaatgttc aaccccggtc gttgcccacc agctatagtg
      181 gcggcgacca tgattagcga acgacgctca tggcaagact tattctgctc actgagtggg
      241 caaaagagga attcagtgaa ccggtcccaa ctccgagtac gttaagtaaa tacgctaaag
      301 ccggaatgat atttcctctc cccaaaaaag ttggaagacg ctggcgagtg gatccgcaag
      361 ctcgctttgt cggaatggta aacaagccgg aggtgatcgc cacagatcac cctgctttga
      421 agaggatact ggaagatggc gcgcccgcga aaatataaaa ccaatgttcc gggattatct
      481 ccgtattttg acaaaagaaa taacaaagtt tactggcgtt acaggcatcc cataacaggc
      541 aaaaatcacg gtctcggcag tattgaccag aaactggcag aaactattgc agcagaagcg
      601 aacagccgtc ttgcccggca gcaaatggaa caaatgctca gtctgcagga gaaaattatt
      661 agtgataccg gcggttcatc aaccgttacc atttttctga ataattacag aaaaattcaa
      721 caggaaagat atgaaaacgg cgagatcaaa ctcaacacgc tgaaacagaa agcggcccct
      781 ctcagggtat ttgatgaacg ttttggcacc agaccgttag atgccataac cgtaaaagat
      841 gtggtatcag tactggaaga gtacaaggcc agaggacata acagaatggg acaaattttc
      901 aggaaggtac tgatcgatgt tttccgggaa gctcagcaaa cgggcgatgt cccgccaggc
      961 tttaaccctg cagaatcggc aaaaaaaccg caggtgcgga tatcaagaca gcgactgact
     1021 tttgatgagt ggatgatgat ttataacgca gcggaaaagg atggttactt tttacagcgc
     1081 ggtatgctgc tggcactgat gacaggccag cgcctttcag atatttgcaa aatgcaattt
     1141 tcggatatcc gggatggtta tcttcatgtc gaacagcaaa aaacaggaac ccggattgcc
     1201 atccctctgg ctctgcgttg cgataaatta aatctcaccc tagatgatgt ggtgtcatcc
     1261 tgccgcgatt gcgttcttag tccgtggcta ttgcaccacc atcacgcgaa agggacagct
     1321 aagcgcggcg ggatggttaa gccagcaaca ttaaccgttg catttaaaaa agcccgggat
     1381 tctgtggatt acaactggcg tgctaatggc accccaccct ctttccatga gcagagatct
     1441 ttatcagagc gattgttcag agagcagggg gttgatacca aaattttgct gggccattcg
     1501 aatcaaaaaa tgaccgatat ttacaacgac gcacgcggta aggaatggaa aaaactggtc
     1561 atttgatgac cagttttgca gaggggtttt gcagaggttt tgcagagaaa attaaaaacg
     1621 atatcctgcg gagaacataa acacccacgg atccagtcgt accgagtctt ttacggtagt
     1681 aacaccagat ttgtacttag ccgtggtatc gatatccatg taccacactg acatgttaac
     1741 caaccagtca cggttaatca gataatcaac ccccacctgc ccggcagctc cccaggaatc
     1801 tttcagactg agatcggaaa gccctgcctc tttgccatga tcgttaaatc cattatcaaa
     1861 gaaggtggtg tagttaatac ctgccccaac gtaaggacgg aatttgctgc tggcatcacc
     1921 aaaataccac tgcgccatca gtgttggcgg cagatggtga acggttgcaa tatcgccggt
     1981 cgcccgggtg ccgattttat ggcggaacgg cgtcgctgcc agtaattcca caccaatgtt
     2041 gtcggtcgcc atataagtaa acgtcaagcc cagttgagtg ttattggtca cgctgaatcc
     2101 acccagactt cctaacgtac caccagcacc ttctgttgga cgtacggttg cagaacctgc
     2161 acgcataaaa aattcgcctg cttcatgcgc aaaggcactg ccagagagaa gagttgttac
     2221 tgccaaagcc gccactgtta actttttcat atccgctccg tcgttatggt tataaaaacg
     2281 tgacgaatat acctacattg gagtaacaaa tgatcctaca tagatcacat tacatatgat
     2341 aattcaccct ttattgatct ggattaattt agaagttgca ttgagaatcc tggttaacgt
     2401 gatttaaatc aatttttaaa tattttcgct acgcaaatat taactcgatc gccacttgcc
     2461 gcggtttgcc cacgcctgaa ggccagcaat tacctccgct ttacaaagat atgcttttcc
     2521 atacaagacc tgatgctgcc acccgaggct taaccagggt acaattgccc gctaattaac
     2581 acctgcataa aactcaagga gagtgcatgt ctatcacggc gcagtccgta taccgtgaca
     2641 ccggaaattt cttccgtaat caatttatga ccattctgtt ggtatcgttg ctatgtgcgt
     2701 ttatcacagt ggtgttaggg catgttttct cacccagtga tgcacagctt gcgcagctca
     2761 atgacggcgt gcccgttagc ggcagtagtg ggttgttcga cctggttcag aatatgtcac
     2821 cggaacagca acaaattttg ctgcaggctt cagcggcgtc cactttttca ggattaatcg
     2881 gtaacgccat tctcgccgga ggcgtaatat taattatcca gctggtgtct gcgggtcaga
     2941 gagtcagtgc gctgcgagct attggtgcca gtgcaccgat attgccaaag ttatttattc
     3001 tgatttttct gactaccctt ttagtacaga ttggcatcat gctagtggtc gttccgggaa
     3061 ttatcatggc cattttactg gccctggcac cggtgatgct ggtacaggac aaaatgggca
     3121 tttttgcctc gatgcgtagc agtatgcggc tgacttgggc gaatatgcgt ctggtggcac
     3181 ccgcagtact gagctggttg ctggcaaaaa cactgttgct gctttttgcc tcttcttttg
     3241 ccgcattaac cccggaaatt ggtgccgtac tggcgaacac cttgagcaac ctgatttcag
     3301 ccgtattgct catctatctg ttccgtctgt atatgttgat tcgccaataa ccttaagcat
     3361 ttgattacgg aatcgtaaaa tgaagcagtt tcttgatttt ttaccgctgg ttgtcttttt
     3421 cgcgttttac aagatttatg acatctatgc ggctactgcg gcgctgatcg tcgccacggc
     3481 gattgtgctt atctatagct gggttcgctt tcgtaaggtt gagaagatgg ccctgatcac
     3541 ttttgttctg gtggtcgtct tcggtggctt gacgctgttc ttccacaatg atgagtttat
     3601 taaatggaag gttacagtca tttatgctct gtttgcggga gccctgttag tcagccaatg
     3661 ggtgatgaaa aagccgctaa ttcagcggat gctgggtaaa gaactcacgc tgccgcaacc
     3721 ggtatggtcg aagctgaatc tggcctgggc tgttttcttt atcctttgcg gtctggcaaa
     3781 catctacatc gcattctggc tgccgcaaaa tatttgggtc aactttaaag tctttggact
     3841 gaccgccctt accttaatct tcacattgtt aagcggtatc tatatctacc gccacatgcc
     3901 gcaggaagat aaatcctaac cagactgcca gtccttcggg gctggcgctg tatctcctct
     3961 gttctcctca ggaaaatcat agtagcatcg cgcctgtgat tttcctttta agtcggtttt
     4021 accatgtcta caacacataa cgtccctcag ggcgatcttg ttttacgtac tttagccatg
     4081 cccgccgata ccaatgccaa tggtgacatc tttggtggtt ggttaatgtc acaaatggat
     4141 attggcggcg ctattctggc gaaagaaatt gcccacggtc gcgtagtgac cgtgcgggtt
     4201 gaaggaatga ctttcttacg gccggttgcg gtcggcgatg tggtgtgctg ctatgcacgc
     4261 tgtgtccaga aagggacgac atcggtcagc attaatattg aagtgtgggt gaaaaaagta
     4321 gcgtctgaac caatcgggca acgctataaa gcgacagaag cattatttaa gtatgtcgcg
     4381 gttgatcctg aaggaaaacc tcgcgcctta cctgttgagt aatagtcaaa agcctccggt
     4441 cggaggcttt tgactttctg cttactgaat ttcggtggtg ccgttaattt taaacaggat
     4501 attcaccaca atcccactgc ctggcttacc cggctcataa cgccatctgc gcatcgcatt
     4561 tttcacctca cgctcaaaca tgttcgcagg cttggctgag aggatttgta cgttatccac
     4621 gcgaccatcc ggcgtgacgt caaatttaac tttaacctgc ccttcaatgc gcaatgcctg
     4681 tgctcgtgcc ggatactgcg gctgattacg gcttaatgcg cgtggtcctg aagccacact
     4741 ggtaaccggc ttgctggttg cagccgttgc tgtacttgat gtcaggcgtg ccagtgccgt
     4801 attttcaaac ggtgatgccg gacgcgactc tacgggtttg acatcgcgtt ttggctgctc
     4861 ctgtaccttt ttcaccggct tcggttttgg cttaggtttc ggcttcggct tttcaatgac
     4921 caccggtgct tcttttggcg gttcggggat cggctcaggt tccggttctg gctctaccac
     4981 cggctccggt ggcggctgaa cggcttgtgg cggttcgaga tcagcaggcg caaccatcgt
     5041 gacagaaatt ggctgcgcag gcgcaggtag ttcaataacc tgatgtaccg aggtatagag
     5101 cagacccgcc acaacagcac catgaatgca gaccgaaagt aacgtcggcc aggggaagcg
     5161 gcgaggtaaa tcaagggtca ttgaagtcat aatcatttca gtagaaaaac caagcctcga
     5221 ttttaaatgc aaatagcaat catattcaat aaggcaagac gatcaggatc agtgaaaatg
     5281 tcatttttgc cgtaattaac cttactttat gcatggtctt aacaaagaca tcatctttcc
     5341 gttgcagatc ttcgcccttt caaataacgt actttacaac tttcccgaac aaggagttgt
     5401 gcccgtgttg tatgttattt acgctcaaga caaagctgat agcctcgaaa aacgcctttc
     5461 cgttcgtccg gcacatttag cacgtttaca gttactgcat gatgaaggtc gtttgttgac
     5521 agctggtcca atgccagcgg tagacagtaa cgatccaggg gctgcgggat ttactggctc
     5581 aaccgttatt gctgaatttg aatcgctgga agcagctcag gcctgggccg atgctgaccc
     5641 gtacgtagcg gcaggagtct atgaacacgt ttcagtgaaa ccatttaaga aagtgttctg
     5701 aatagagatt caatatttaa gggcacggtt tttgcaaccg tgttcttgtt tggcctttcc
     5761 ttatagccgg tcagtgcatt caccaccaca agcagataat aactttatct gtatttcttt
     5821 atatgatgtg agcatattca ggaaaaatga cctttcctga ggtacagttg ctcgctcaaa
     5881 acctttgatt actgcggata aagtcatcta ctattgttta acacattcac gcgctgcatg
     5941 tatgttcaga aaatgtgcac gctaagataa ttaaacaaaa ttgtggttac agaggtatca
     6001 gtgagtcact gggctacatt caaacaaaca gcaacaaatt tatgggtgac cctacggcac
     6061 gacattctcg cgctggccgt ctttttaaat ggattgctta tttttaaaac aatctatggt
     6121 atgtcggtca atttgctaga tattttccat atcaaagcat tttcagagtt ggatctctcc
     6181 ttgctggcaa acgccccact atttatgctc ggcgtctttc ttgtcctgaa ctccattggc
     6241 ttactgttcc gggcaaagct cgcatgggca atcagtatca ttttgttgtt gatagcgcta
     6301 atttataccc tgcattttta tccctggttg aaatttagta ttggattttg catttttacg
     6361 ctggtgtttt tgctgatact gcgcaaagac ttctcccaca gtagcgccgc agccgggaca
     6421 atttttgcat ttattagttt cacgacatta ctgttttact caacctacgg tgcgctttat
     6481 ttaagcgaag gttttaatcc gcgaatagaa agtttgatga ccgcgttcta tttttcgata
     6541 gaaaccatgt caaccgtcgg ctatggcgat attgtccctg tttctgaatc agcacgattg
     6601 ttcactattt cggtcattat ttccggtatt accgtttttg ccacatctat gacctcaatt
     6661 tttggtccgc ttatccgcgg gggattcaac aaacttgtaa aaggaaacaa tcatacaatg
     6721 catcgtaaag atcattttat tgtttgcgga cattcgattc tcgccatcaa tacgattctg
     6781 caactgaatc aacgcggaca aaacgtaacg gttatcagca acttgcctga agatgatatc
     6841 aagcaacttg agcaacgctt aggcgataac gctgatgtta tccccggtga cagtaatgac
     6901 agttcagtat taaagaaagc gggaatcgat cgttgcctgg ccattctggc gctgagtgat
     6961 aacgatgcag ataacgcgtt tgttgtactc tcggcaaaag atatgagcag tgatgtcaaa
     7021 acagttctcg ccgtcagtga tagcaaaaac ctgaataaga ttaagatggt acatccggat
     7081 atcattctct caccgcaact gtttggcagc gaaattctgg cgcgagtttt aaatggtgaa
     7141 gagattaata atgatatgct cgtttcaatg ttgttgaact ccggtcatgg cattttcagc
     7201 gataacgatg aacaagaaac gaaagctgac agtaaagaat cggcgcaaaa atagagttta
     7261 aagatggagg agtaaactta ttgggcaccg caatggtgcc cagtacattt agatattgta
     7321 gatcgcaaac aataacgagt tacgctgttt gtttagaatg cacttcctga tgctgtggat
     7381 acgcatattt cggcgcgatt gcccctcaag ccaacgcgat ttacgtcggc tagcctgacg
     7441 ctgcatgcgc cagcgcccca cttccgttct actccgcttc atgttaacta ctctatgcaa
     7501 taacagaatg gtcattatac ccccgccccc gacgctgacc agtgcttttc ccgcgttttt
     7561 atttgccaga tgaatccata tgcgtaaact cataacaatg cgctttcaaa aggatttcta
     7621 atctatgaca accgtttata cgttggtgag ttggttggcc attctgggat actggttgct
     7681 cattgcaggc gtaactttac gcattctaat gaaacgacgc gcagttccct ccgcgatggc
     7741 ctggctgttg attatttaca ttctgccgtt agtcggaatt attgcctatc ttgccgttgg
     7801 cgagctccat ttaggcaaac gccgcgctga gcgcgccaga gcgatgtggc cttccaccgc
     7861 aaaatggctt aacgacctta aagcctgtaa gcatatcttc gccgaagaaa atagcagtgt
     7921 cgctgcgcca ttattcaagc tttgcgagcg tcgtcagggg atcgctgggg tcaaagggaa
     7981 tcagctacaa ctgatgaccg agtcagatga tgtgatgcag gcgttaatcc gcgacatcca
     8041 gctcgcgcgc cataatattg agattgtgtt ttatatctgg cagcccggcg gcatggcgga
     8101 ccaggtggct gaatcattaa tggccgctgc gcgacgcggc attcattgcc gattgatgct
     8161 cgactccgcc gggagtgtgg cttttttccg cagcccgtgg cccgagctaa tgcgtaatgc
     8221 cggtattgaa gtggtcgaag ccttaaaggt caatctgatg cgtgtgtttt tacgccgtat
     8281 ggacctgcgc caacatcgca agatgatcat gatcgataat tacatcgcgt acaccggcag
     8341 catgaatatg gtcgatcctc gctacttcaa acaagatgcg ggcgtagggc aatggattga
     8401 tctgatggcg cgtatggaag gccccatcgc caccgcgatg gggattattt attcctgcga
     8461 ctgggagatt gaaaccggaa aacgtattct gccgccacca ccagatgtca atattatgcc
     8521 gtttgaacag gccagcggtc acaccattca cacaattgct tctggccccg gctttccgga
     8581 agatctcatt caccaggcat tattgactgc ggcttattcg gcgcgtgaat atttgatcat
     8641 gaccacgccc tactttgtgc caagcgatga tttacttcat gcgatttgca cggcggcaca
     8701 gcgcggggtg gatgtcagta ttatccttcc gcgaaaaaat gactcgatgc tggtcggctg
     8761 ggccagtcgc gcattcttta cggaacttct tgctgctggg gttaaaattt atcagtttga
     8821 aggcgggtta ctgcatacca agagcgtgct ggtcgatggc gaactaagtc tggttggcac
     8881 cgttaacctt gatatgcgta gtctgtggct gaatttcgag attaccctgg caatcgacga
     8941 taaaggtttt ggtgcagacc ttgccgccgt tcaggacgat tatatttcgc gttcacgtct
     9001 gctcgatgcc cgtttatggc taaaacgtcc attatggcaa cgtgtcgccg agcgactgtt
     9061 ttacttcttc agcccgttgc tgtaaaacgt ctccaacaga ggttaaacag gtagtgacta
     9121 tggatatgga tctaaacaat cgcctgactg aagatgaaac gcttgagcag gcctacgata
     9181 tttttctcga actggctgcc gacaatctcg acccagctga tgttctgctg ttcaatcttc
     9241 agtttgaaga gcgcggcggc gcggagttat tcgatccggt ggaagactgg caggaacatg
     9301 ttgatttcga tttgaacccg gacttttttg ccgaagtggt gattggtctg gcggacagtg
     9361 aggatggtga aatcaacgat gttttcgccc gcattctgtt atgccgcgaa aaagatcaca
     9421 aactttgcca tatcatctgg cgggaataaa taatcgcttt cggcgtgaaa aagggctgac
     9481 aactgtcagc ccttattgtg tttaaagcgg atcgactttc aggcaagaaa cggcgtgtct
     9541 gaaactccct tccagcacag gacgtgtttt ggcgcactcc ggaccggcaa tcgggcaacg
     9601 ggtacggaaa acacaaccgg aaggcgggtt gatcggcgac ggtaattccc cttccagtaa
     9661 ctggatggtt ttgttcttct ccagatccgg atcaggtatg gggactgccg acatcaatgc
     9721 cctggtgtaa ggatgtagtg gattgtggta gacctcatca taggtcccca gttctaccgc
     9781 atggccgaga tacatcacca acacacgatc ggaaatgtgt tttaccacgg ccaggtcatg
     9841 agcaataaaa attaatgaca atcccatctc acgttgcagc tgctggagca ggttgaccac
     9901 ctgcgcctga attgacacgt ccagcgccga caccggctca tcacagataa tcagcttcgg
     9961 ttcaagaata agagcacgag caatcccgat acgctggcac tgcccaccgg agaactcatg
    10021 cggatagcgg ttaatcaggt taggcaataa cccgactttc agcatcatcg ccttcacgcg
    10081 ctcgcgaact tcctgacgtg acattttcgg atgataagta cgcagtggtt cagcgatgat
    10141 ctcgccgatg gtcatgcgcg ggtttagcga tgccaacgga tcctggaaaa tcatctgaat
    10201 atcactgcga acggcacgcc attcatcggg cttaatgccc agcaactctt tacctaacca
    10261 ggcaacatga ccgtcggtcg ctttaaccag gccaatgatg gcgcgagcaa aggtggactt
    10321 accgcatccc gattccccta ccacacctaa tgtttcccct tcatacaggc gaagcgtgac
    10381 accatcgacg gctttgagcg ttttcggcgg ttgccagaac cactgtttgc catctttgat
    10441 ttcaaagtgc actttcagat cggcgatttc aaggaggact tttcttcctt cggttacagc
    10501 attcataaca gttcctccac cggtttaaag caagcacaca gacggccaag cgtaaactct
    10561 tccagcggcg gtgcgctact acaaatttcc atcgcatgcg gacaacgtgg ctggaacggg
    10621 caacctttcg gtaatcgcag caggtttggc ggattacccg ggatggtcaa cattgtttca
    10681 ccttccgcat cgagacgcgg caccgcgttg agcaaaccga tagaataagg atgaacgggt
    10741 tgataaaaga catcgcgcgc gttgccatat tccatcgtgc gcccggcgta cattaccagc
    10801 actttgtcac agatccccgc caccacgcca agatcgtggg taatcataat gatggcggta
    10861 ttaaattccc gtttcagttc atttaatagc gtcatgatct gcgcctgtac ggtgacgtcc
    10921 agcgctgtag tgggttcatc cgcaatcagc agcttaggtc gacatagcaa tgccatcgca
    10981 atcataactc gctgacgcat gccgccagaa aactcgtgcg ggtacatttt catgcgttta
    11041 cgtgcttccg gcatttttac cgcatcgagc atccgcaccg actcttcaaa cgcctcagct
    11101 ttgctcatgt tcttatgcag catcagcact tccatcaact gctcaccgac gcgcatatag
    11161 ggattcaacg aagtcattgg gtcctgaaaa atcattgaga tttgttcagc gcgcagttta
    11221 ttgagttcat gctctggcaa attgaggatt tcacgcccat tgaaggttgc cgatccgcca
    11281 atacgtccgt tggcagccaa caggcccatc aacgcaaatg cagtttgcga tttacccgaa
    11341 ccagactcac ctacaatacc cagcgtttct ccggcacgta gggaaaaatt caaatcattg
    11401 accgccgtga cgtcgccgtc cggggtacta aaggtgacac gcaaatcttt cacgttcagc
    11461 agtgcgtcag cctgttgttg tgcgagcggc acagttgcag tttcaattac gctcatggct
    11521 gcactcctta acgatctttc gggtcgaggg catcacgcaa gccatcgccg ataaagttga
    11581 aacaaaacag cgtcaccacg aggaatcccg ctgggaacaa caataaccat ggagagactt
    11641 ccatcgagtt cgcgccatca ctcagcaatg caccccagct gcttaacggc tcttgcgtac
    11701 ccaaccccag gaagctaagg aaagattcaa agaggatcat gctgggcacc agaagtgatg
    11761 cgtagaccac caccacaccg agtacattcg gcacaatgtg gcgaataaca atgcccgatg
    11821 tcgatacacc gccaacttgt gccgcctcaa taaactcttt gcgcttcaga ctcagggttt
    11881 gcccacgcac aatacgagcc atatccagcc aggaaaccat gcctatcgcc acgaaaatca
    11941 gcaggatgtt ttgaccgaaa aaggtcacca gcaaaatgac gaagaacatg aatgggaagg
    12001 agttgaggat ttccagcaga cgcatcatta ccgaatccac tttaccgccc agataaccgg
    12061 aaagcgaacc ataaagtgtc ccgacgacca cagccaccag tgccgcagca acaccgacca
    12121 tgagtgagat acgcccacca atcgcaacgc gcacaagcag gtcgcgaccg gatgagtcag
    12181 taccaaagta gtgaccggac tccatatccg gggcgctgga catcatcgcc cagtcagtat
    12241 cgtcataggc aaactgggaa agcatcggtg ccaggattac aaataacgcg atcagcacca
    12301 gcaccatcag actggcaacc gccgcacggt tatgaataaa acgtcgacgt gcgtcctgcc
    12361 acaagctgcg cccttcgacc tccagctttt cactgaaatt ttccagcgtc tcgctgtttt
    12421 tcttacttaa catcatcgcg agctccagta tcagtaacgg attttcgggt cgataaccgc
    12481 atatagcaca tcgacaatgg cattaaacaa aatggttaaa gcaccaacca ggatggtcag
    12541 gcttaacact aaggaatagt cacggttcaa tgcgccatta acgaacagtt gtccaatccc
    12601 cggcaaacca taaatggttt cgataaccat agaaccggta ataatgccga caaatgcggg
    12661 gcccatataa gagagcacgg gtaacagagc aggttttaat gcgtgacgta aaatgatccg
    12721 ccgcataggt aaccctttcg cccgggcagt acgaataaaa ttggagtgta atacttcaat
    12781 catagagcca cgggtaatac gcgcaatact ggcgatataa gcgagtgaca acgccaccat
    12841 cggcaatatc atgaatttaa gcgccccacc attccagcca ccgcccggca gccaatgcaa
    12901 aatgatcgca aatatcatga ctaataatgg tgcaaccaca aaactgggga taacaacccc
    12961 ggtcattgcc agccccatca cggtatagtc ccatttggtg ttttgtttta atgcggcaat
    13021 aacgccagca ctaacaccca gtattaccgc aaggaaaaat gctgcggctc ccagtttggc
    13081 agaaacggga aaactggatg caaccaagtc attgaccgaa taatctttat atttaaacga
    13141 tggaccgaaa tcaccgtgcg ccagttgttt caggtagctg aaatactgtg tcatgatcgg
    13201 atcattaaga tgatatttcg cttcgatatt ggccatcact tctggcggta aagtacgttc
    13261 gccggtaaaa gggcttcccg gcgcgaggcg catcataaag aacgaaatag taataagaat
    13321 aaatagcgtc ggaatcgctt ccagacagcg acgtagaata aattttaaca ttgccctacc
    13381 ttctggcctg tgccttctgt aatgcgataa aaatcagaca ccgtggagca ggacactcct
    13441 gccccacgta ttgccattag tgcttcacaa tgtacatatt ccgggtatag gtattatcca
    13501 gcggatcttt gccggtatag ccaccaaccc acggtttcac cagacgcgca ttcacgtagt
    13561 aataaacagg aacaatggcc gaatccttat ccagctgttg ttctgcttta gtgtacagag
    13621 ctgtgcgctg cgcctcgtca gtcactttca gcgtttccgc cataatgctg tcaaaggccg
    13681 ggctcttata atgcgcggta ttcatcgagc tgttcgaaag catggtgttc aggaaggaag
    13741 ttggttcgtt gtagtcagca caccagcctg cacgggccac atcaaaagta ccctggtgac
    13801 gggtgtcgag gaacgttttc cactcctggt taaccagttt gacgtttaca ccaatgtttt
    13861 tcttccacaa tgaagaggca gcaatcgcca gctttttatg cagatcggag gtgttataca
    13921 acaggttgat tgtcaacggt ttgtctgcgg tataacccgc ttcagccagc agttttttcg
    13981 cttcttcgtt acgtttttcc tggctccagc caaaccattc cggctgagtc aattttgcgc
    14041 catcagtata cggtggagtg taaccatagg cgggcatgtc gccctgcgct ttcactttat
    14101 taacaatgat atcgcggtcc atacctagtt tcagtgcggt acgcacacgc acatcgttga
    14161 atggcggttt ctggttgtta atttcgtaat agtaagtgca caggtatgga tcaacgtgaa
    14221 cttcgtccgg gatctctttt ttcagcttct ggaacaattc gatcggcatg ttgttataag
    14281 tcatgtcgat ttcaccacta cggtagcggt tgacatcggt aacttcagaa gcaataggca
    14341 aataggttac ctggttaata acggttttcg cgttgttcca gtaggtcggg ctgcgttcaa
    14401 gaacgattcg ttcgtttacg acccaatctt ttaaggtata ggcaccgttg gtgacgatat
    14461 taccaggctg ggtccatttt tcgccgaatt tctcgatagc ggcttttggc accggtgaag
    14521 ttgatgggtg aacaagtaat ttatagaagt acggaacggg ttcacttaag gtgacttcta
    14581 atgtgtgatc atcaatagct ttcacaccga gatcggtaat cggttttttc ccttcaagaa
    14641 tttcatcaat accggcgata tgcccatatt gcagataact ggcatacgga gaagcagtgt
    14701 tcggatcaac agaacgttgc cagctataca caaagtcttg tgctgtgact ggcgtaccat
    14761 cagaccattt cgcatcttta cgcaaatgga aggtccagac tttcgcgtct ttattatccc
    14821 aggattcagc gacgccaggt gccggatgac cgtcaagatc gctgaccagt aagccttcaa
    14881 acaggtctcg gctgatatta gactccggaa caccttcaat tttgtgcgga tctaatgact
    14941 gaacttctga accattgtta cgtaccagcg tttgtttttc cgccagtgtg acgcctgcgg
    15001 gtacatcagc tgccagcgcg acattccctg ccattagcgc agccagaacg ccagctgcta
    15061 ctaaacttct cttggtgatg ttggtcattg ttttttggac tccctcatta taattactgg
    15121 tattaaccag catgtgtaat cccggattgg gaccctgcac aggctcggag actttctgct
    15181 gtcaggttac tttatcgtta cggattgcta tcaccgactt tatttattct ggtgattcag
    15241 acgatcacct tatgtcgatt cgtactgtgt ctcccctgtc gagacacatt attctttcgc
    15301 gacgctcttt aattgttaat tattctcatt accaataaag aatcgtctgg cggttgcccg
    15361 gaaagtacta aatgcggttc ttactcgcca atacattttg caaaattgtt aagcaattct
    15421 cttttattga ccgtatcaga atctatagct tgcatccatg ccttaacaaa catctttcaa
    15481 ttcaatcaaa tagagattgg ctaagcatgt ctatcttttc tgattacagt ttcagtattg
    15541 aaatgcacaa taatttaaca attgattatt atttagcact ttcctctacc aaaggcagtg
    15601 gaattactaa tatcatttca attattcttc agcaagccca ggattatgat gtggcgaaaa
    15661 taacatgatg gtgaggagaa gcagttaaga aaatccttat aactaactgt aatttgagaa
    15721 gaatattttt acctattcct tttgcttttg ataactgcg
//
LOCUS       DAJVUY010000095        15696 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.095, whole genome shotgun sequence.
ACCESSION   DAJVUY010000095 DAJVUY010000000
VERSION     DAJVUY010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15696
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.095"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            7..1242
                     /locus_tag="OQQ72_002664"
     CDS             7..1242
                     /locus_tag="OQQ72_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS2012337.1"
                     /translation="MSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAG
                     NLRALIVHEISSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNT
                     MKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRT
                     VDSYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQS
                     QNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTL
                     LQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVS
                     SLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYG
                     MWIDDMNDEQIAMLNARLS"
     gene            1294..2229
                     /gene="ttcA"
                     /locus_tag="OQQ72_002665"
     CDS             1294..2229
                     /gene="ttcA"
                     /locus_tag="OQQ72_002665"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HCS2012338.1"
                     /translation="MQENQQITKKEQYSLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEDENQLDELRLNVVEVK"
     gene            complement(2358..3731)
                     /gene="dbpA"
                     /locus_tag="OQQ72_002666"
     CDS             complement(2358..3731)
                     /gene="dbpA"
                     /locus_tag="OQQ72_002666"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HCS2012339.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(4177..5160)
                     /gene="zntB"
                     /locus_tag="OQQ72_002667"
     CDS             complement(4177..5160)
                     /gene="zntB"
                     /locus_tag="OQQ72_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HCS2012340.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5415..6647
                     /gene="dgcM"
                     /locus_tag="OQQ72_002668"
     CDS             5415..6647
                     /gene="dgcM"
                     /locus_tag="OQQ72_002668"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HCS2012341.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6668..7231)
                     /gene="smrA"
                     /locus_tag="OQQ72_002669"
     CDS             complement(6668..7231)
                     /gene="smrA"
                     /locus_tag="OQQ72_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HCS2012342.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7561..8469)
                     /locus_tag="OQQ72_002670"
     CDS             complement(7561..8469)
                     /locus_tag="OQQ72_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2012343.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8645..9945
                     /gene="abgA"
                     /locus_tag="OQQ72_002671"
                     /pseudo
     CDS             8645..9945
                     /gene="abgA"
                     /locus_tag="OQQ72_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgA"
     gene            9945..11390
                     /gene="abgB"
                     /locus_tag="OQQ72_002672"
     CDS             9945..11390
                     /gene="abgB"
                     /locus_tag="OQQ72_002672"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgB"
                     /protein_id="HCS2012344.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANFPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTLSSLK"
     gene            11427..12953
                     /gene="abgT"
                     /locus_tag="OQQ72_002673"
                     /pseudo
     CDS             11427..12953
                     /gene="abgT"
                     /locus_tag="OQQ72_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
     gene            12964..13479
                     /gene="ogt"
                     /locus_tag="OQQ72_002674"
     CDS             12964..13479
                     /gene="ogt"
                     /locus_tag="OQQ72_002674"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HCS2012345.1"
                     /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            13674..14426
                     /gene="fnr"
                     /locus_tag="OQQ72_002675"
     CDS             13674..14426
                     /gene="fnr"
                     /locus_tag="OQQ72_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HCS2012346.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            14578..15528
                     /gene="uspE"
                     /locus_tag="OQQ72_002676"
     CDS             14578..15528
                     /gene="uspE"
                     /locus_tag="OQQ72_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HCS2012347.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFEPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD"
     gene            complement(15578..>15696)
                     /locus_tag="OQQ72_002677"
     CDS             complement(15578..>15696)
                     /locus_tag="OQQ72_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2534 family protein"
                     /protein_id="HCS2012348.1"
                     /translation="WTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ"
BASE COUNT         4055 a         3880 c         3872 g         3889 t
ORIGIN      
        1 catgatatgt ctaaattacc aacaggtgtc gagattcgag gtaaatacat tcgcatctgg
       61 ttcatgtttc gaggaaaacg atgtcgggaa acattgaaag gctgggagat tactaacagt
      121 aacattaaaa aggccgggaa tttaagagcg ttgatagttc atgaaatcag ttccggtgaa
      181 tttgagtatt taagacgttt tccccagtcc agcactgggg caaaaatggt gacaacgagg
      241 gtcataaaaa cattcgggga gctttgtgat atctggacaa aaattaaaga gacagagtta
      301 acaacaaaca caatgaagaa aacgaaatca caattaaaaa cactcaggat aataatttgt
      361 gagagtaccc cgatatcgca tattcgttat agcgatatct taaactaccg gaatgaactg
      421 ctgcatggag aaacgcttta cctagataat ccaagatcca acaaaaaagg aagaaccgtg
      481 cgcacagttg atagctatat cgccctgctc tgttcgttgt tacgttttgc gtatcagtcg
      541 ggatttatat caaccaaacc atttgaagga gtaaaaaaat tacagcgaaa cagaataaaa
      601 cctgacccgt tatctaaaac agaattcaat gcattaatgg aaagtgaaaa aggacagagc
      661 caaaacttgt ggaaatttgc cgtttactcc gggcttcgtc acggggaact ggcagctctg
      721 gcgtgggagg atgtggattt cgagaaggga attgtgaatg tcagaagaaa cctgacgata
      781 cttgatatgt tcggtccccc aaaaacaaat gccgggatcc ggacggtaac attactgcag
      841 ccggctcttg aagcactgaa ggagcaatac aaactgaccg ggcatcatcg caaaagcgaa
      901 atcacttttt atcatcggga gtacggcaga actgaaaagc aaaaactgca ttttgttttc
      961 atgcccaggg tgtgtaacga aaaacagaaa ccttattact cggtaagcag tttgggtgca
     1021 agatggaatg cagcagtaaa acgtgctggt attcgccgcc gtaatccgta ccatacgcga
     1081 catacttttg cctgctggct gttgacggca ggagcgaacc cggcatttat agccagccag
     1141 atggggcatg aaactgcgca aatggtgtat gaaatttacg gtatgtggat tgatgacatg
     1201 aacgacgaac agatagccat gttgaatgcg cggttatcgt agttgcaaag tttgccccca
     1261 atttgcccca tttagtacca gagaactgaa ataatgcaag aaaatcaaca aattacaaag
     1321 aaagaacaat acagcctgaa caaattacaa aaacgtctac gtcgtaacgt gggcgaagcc
     1381 attgctgact tcaatatgat tgaagaaggc gatcgcatca tggtttgcct ctcagggggt
     1441 aaagacagct ataccatgct ggagattctg cgcaatttgc agcaaagcgc gccaatcaat
     1501 ttttcgctgg tggctgttaa cctcgatcaa aagcaaccgg gcttcccaga acacgttctg
     1561 cccgtgtatc ttgaaaagct gggcgttgag tacaagattg tcgaagagaa cacttacggt
     1621 atcgtgaaag agaagattcc agagggcaaa accacttgct cactgtgttc tcgccttcgt
     1681 cgcggtatcc tttatcgtac cgcaacggaa ctgggggcga cgaagatcgc gctgggtcac
     1741 catcgtgacg atatcctgca gacgttgttc ttaaatatgt tctacggcgg caagatgaaa
     1801 ggtatgcctc cgaaactgat gagcgatgat ggcaaacata tcgttattcg tccgctggcc
     1861 tactgccgcg agaaagatat tcagcgattt gccgatgcaa aagcgttccc gattattccg
     1921 tgcaacctgt gcggttcaca gcctaacctg caacgtcagg tgattgctga catgttgcgt
     1981 gactgggata aacgttatcc agggcgtatc gagacgatgt tcagcgcgat gcagaatgtg
     2041 gtgccgtcgc atctgtgcga taccaacctg ttcgatttca aaggcatcac ccacggttct
     2101 gaagtggtta acgggggtga tctggcgttt gatcgcgaag agatcccact acaaccggcg
     2161 ggctggcagc cagaagaaga tgaaaatcag ttggatgagt tacggctgaa tgtggttgaa
     2221 gtgaaataac caggatagcg cccgatgcgc aagcgtatcg ggctactctt atggaggccg
     2281 gataagacgc ggccaacgtc gcatccggca atgccgaaga agatgtttac tcttgcaccc
     2341 ggcaattcaa catttcatta ttttaataac cgcacccggc acgtttttcc tttaatcttc
     2401 ccgccctgta actgtttcca tgctttatga gcaacagcct gacggaccgc gacatagaca
     2461 tgcgccggat gcacggcgat tttgccaata tctgcgccat caagcccgat atctcctgtc
     2521 agtgcaccta atacatcacc cgggcgcatt ttggcttttt tcccgccatc gatacacaac
     2581 gttgccattt ctgcttccag cggcacaatg gaactattag ctggcggcgt ttgccagtta
     2641 agttttatct gcaacatgtc agaaatgata ttggcccgct gtgcttcttc cggagcacag
     2701 aaactgatcg ccagaccgct atttcctgca cgagctgtac ggccgatgcg atgtacatga
     2761 acttcagggt cccacgccag ctcaaagttc accaccagct caagcgattt aatatccaga
     2821 ccacgcgcag caacatcagt cgcaaccagt acacgggcgc taccgttagc aaaacgtacc
     2881 agggtctgat cgcgatcgcg ttgctccaaa tcgccgtgta atgacaatgc actttgccct
     2941 acttcattca gcgcgtcgca gacagcctgg caatcttttt tggtattgca aaacaccacg
     3001 caagaggatg gctgatgcaa gcttaataac cgttgcaaca gaggaatttt gcctttgctg
     3061 gatgtctcat aaaattgttg ttcaatgggt ggcaaagcat ctgttgagtc aatttcaatc
     3121 gccaaaggat cgcgttgcac tcgtccgctg attacggcga tggcttccgg ccaggttgcc
     3181 gaaaacagaa gcgtctgtcg agatgcaggc gcaaaacgga tgacatcatc aatggcatcg
     3241 ctaaatccca tatccagcat gcggtcggcc tcatccatca ccaaagtatt cagcgcatcc
     3301 agtgataccg tgcctttttg caagtgatcc agcaaacgac ccggcgttgc cacgataata
     3361 tgcggcgcat gttgcaacga atcacgctgc ataccgaacg gttgaccacc gcacaacgtc
     3421 aaaattttgg tatttggcag aaaacgcgcc agccgacgca attcacctgc cacctgatcc
     3481 gccagttcac gcgtaggaca cagcactaaa gcctgggttt gaaatagcga cgcatcaatt
     3541 tgctgtaaca agccgaggcc aaaagccgcc gttttgccgc tgccggtttt cgcctgcacg
     3601 cgaacatctt ttccggcaag gatcgccgga agcgcggcgg cctgcaccgg cgtcatagtt
     3661 aaataaccca actcattaag gttcgtgagt tgggcgggag gcaaaacatt cagggtagaa
     3721 aaagcggtca caatctattc tcgtggtcat cgacgcaaag ttagcaggcg cgtatcctcg
     3781 cagatctacg cgggtggtgg gtcaggcatg ggttgcgggc gagggatcgg atcgggcact
     3841 ggaacaggat cgccaggaat cggttcaggg acaggaattt gcaaataaat aagtgtcgtc
     3901 atatttccct ccggtcattg ggtggactct taaagggtag acgctgataa ataacaggca
     3961 aaaaaaagcc gactcatcaa agtcggcgtc gtacgaatca attgtgctat gcagtaattc
     4021 aaaaaaggaa gtaagacaat atggagcgca acgcccatcg cttgacgttg cattcacctg
     4081 caagggagat attgccctga atgggtagag agtttattga cttcgctcaa actttgcggc
     4141 gtttttgtat acagacagcc ggaaaaattg cttttgttac aaccatttac tacgatgcaa
     4201 ccataaagca acaccaccaa taagaacaac taacagaata caaaaaattg aaaatccgaa
     4261 ttgccacccg ccgccaggga tcccaccaag gttgacgcca aataaccctg tcagaaaggt
     4321 actgggtaaa aagaccattg ccatcaatga cattgtatag gtacgacgag ctaaattttc
     4381 ctgcatcacc tgagcgattt catccgccat cacgccagtc cgtgctatac aggcgtcgat
     4441 ttcgtcaaga ccgcgcccaa ggcgatcggc aatatcctgc atccgacggc gttggtcatc
     4501 gctcatccac ggcaaacgtt cactggcaag acgagcataa acatcacgtt gcggtgccat
     4561 atagcgacgc atcacgatta attgtttgcg cagcagagcc aggaatccac gcggtggaat
     4621 ttgctgatca aggagattat cttcaaggtc gataatttta tcgtgcagct gctcgataaa
     4681 ttcgctggaa tgatcggtca acgcatcgca cacatccacc agccaccctc cgcaatcggt
     4741 cggacccgtg ccctcttcca gatcgctcac cacatcgtcc agcgccagca ctttgcgttg
     4801 tcgggtcgaa acaattaacc gcccgtccat atatacacgc atggcgacca gttgatcggg
     4861 gcgttcatcg gtgctgccgt ttatacagcg caatgtaatc agcgtgcctt caccgagacg
     4921 gctgactcgg ggccgtgtgc tctcgcctgc cagcgcatca cgtacgttat tgggaagcag
     4981 cggtgttgtc gccagccatt gggcgctatc atggtgtaca taattaaggt ggagccagca
     5041 gggatgcgct tcatcaatca catctgtatt ttccagcggt ttaacgccgc ctctaccatc
     5101 cagcatccag gcaaatactg catccgggac attaacgtcc gatcccttaa tcgcttccac
     5161 agtgcctcca tcatcaacgc attattttgt agtctagcct tctggccctg ttacgcaaca
     5221 tctcatcacc ccattaccct gaaatgatta ataaaattct gtctaaattg aatacaaaaa
     5281 gcaaaatgct tttccgtata caaaccgtgt gaagtgttaa atagcgtcta tcattatcag
     5341 aattatctga tcatatgacg tggctttttt gcgatcggat agcaacaaaa attgataaaa
     5401 ataacgggat ctcaatgatt acgcacaact tcaataccct ggacttactc accagtcctg
     5461 tctggattgt ttcgcccttt gaggaacagt taatttatgc caatagcgcg gcgcgactgt
     5521 tgatgcaaga cctcacgttt agtcagctac gaaccggacc ctattccgtc tcctcacaaa
     5581 aagaactgcc gaaatacctc tccgatctgc aaaaccaaca cgatattatc gaaatcctca
     5641 ctgttcagcg taaagaagag gaaacagcat taagctgtcg gcttgttttg cgagagctga
     5701 cagaaacaga accggtgatt attttcgaag gtatcgaagc gccggcaacg ctgggtttaa
     5761 aagccagtcg ctcggcaaat tatcagcgca aaaaacaagg tttttatgcg cgcttttttc
     5821 tgactaactc tgcaccaatg ttgttgattg acccctcacg agatggccaa atcgtcgatg
     5881 ctaacctcgc cgcgctcaat ttctacggtt ataaccatga aacgatgtgc cagaaacata
     5941 cctgggaaat taatatgctc gggcgtcgcg tcatgcctat catgcatgaa atttcgcatt
     6001 tacccggcgg tcataaacct ttgaattttg ttcataaact ggcggatgga tctactcgtc
     6061 atgtgcagac ctatgccggg ccgattgaaa tttatggcga caagctcatg ttatgtattg
     6121 tgcatgatat tactgagcaa aaacggctgg aggagcagct ggaacatgct gctcaccatg
     6181 acgcgatgac cggattactg aatcggcgac agttttatca cattacggaa ccaggccaaa
     6241 tgcagcacct cgccatcgcc caggattaca gcttgttgct catcgacacc gatcgtttta
     6301 aacacattaa cgatctctat gggcattcta aaggtgatga ggtgttatgc gccctcgccc
     6361 gcaccctcga aagttgcgct cgcaaaggcg atttggtgtt tcgttgggga ggcgaagagt
     6421 ttgtcttatt gctaccaaga accccactgg ataccgcgct ttcgctggct gaaactatcc
     6481 gtgtaagcgt ggccaaagtg agtatttcgg gcttaccacg ttttaccgtc agcattggtg
     6541 tggcgcatca cgaaggaaat gaaagcatcg atgaactgtt taaacgcgtt gatgatgctt
     6601 tgtatcgggc gaaaaatgat ggacgcaacc gcgtgctggc ggcataagcc gcggatgcgt
     6661 ctcgagatca acggctgcgc ttagcgtggc gctcccagtt ttcttgcttc gcctgcgccg
     6721 ttttacgtag tgcgacgtaa cacgccccgc tgccgccatg atgcggtagc gcggtgcaat
     6781 atgcctgaac atcatcaaat tcggtcagcc agcgcgccac atagctgcgg acaatattgg
     6841 catgcgattt atcttcccgc cctttaccat gaataatcag cacattacgc aaaccatccg
     6901 ccagggcttg gtgaatgaaa ctgaacacca ttttgcggca ctcttccacc ggctggcgca
     6961 aaagattcag gctcgcctgt tgcggatatt taccactgcg cagcttatcc agcaccccat
     7021 gttgcaaccc ttcccgccga aactccagcg gctgacttag cgggatgatg tcgagaaatc
     7081 cggtggtgag gaaattatca agctgcagcg tgtcgatacg ctgcggcgca cgttggttac
     7141 gcgttggatg ccagtggaca tctgtagcac gtttcagcgg ctggacatct tccatggcgt
     7201 caagaaacag cgatttgtcg tcaaggttca tgttacatcc tcccgcaatt aagagcgcga
     7261 tatgataacc agaccgggtc ggtccaacaa cgtattacca aaaattccag taataagttc
     7321 caaatattgc cgatatttta agcaaaatgc ttatgcatga ttattcattc acgatattaa
     7381 taatgtaact tatattttcg tgaaatctgt cactgaagaa aattggcaac taaaggttaa
     7441 aaccgttata acacagtcac cggcgcagag gagacaatgc cggacttaag acgcggatgc
     7501 actgctgtgt gtactgtaga gtctggcgga tgtcgacaga ctctattttt ttatgcagtt
     7561 ttaactttgc agatagccgc attctcgccg gaattgcgtg attaatgacg gggtcagtgg
     7621 tgtctggcga ctatcacgcc gctgaatcaa ataataggcc gctttcggta aaatttcgct
     7681 aaccggcaac atcaccagcc cctgtccgtg caagggatcg cagcccattt cttcaggcag
     7741 tatgctgaga aaatcgcttt ttgccaccag actgatacag gctgagaacg tctcgcagac
     7801 tacaccgacc tgtggcgttt gcgcctgatc gtcaagcaat tcactcaact gtttgtagta
     7861 actgccgtgt ggcgtcggca ttgtccagct gtaatccagt aactgtttga tcgaacgggc
     7921 accaatggcg gggtgtcccg ggcggcaaaa gatcgcgaat tgcttttcca gtaatttctc
     7981 aaaagtaaat tcgtggtcgt acggtccctg ataataggta ttgatggtga aatccaattc
     8041 tccctgacgc aattcattaa tcatcgacac cagttgccct tccataatgc gtacttttac
     8101 ctgcggatgc tgctgatgaa aacgagatat gacagctggc atcagactgc gggaaatact
     8161 ggcccccatg ccgatattaa tctgccctgc cagttgccct tgtcgttggc gaatatcctc
     8221 ttgggctgcg cgcagctctt caagaataag actggcgtgc tgataaaaac tttcaccggc
     8281 atcagttaac gtcacgcctt tactacggcg aaaaaagagt tgcgccgcta atccttcttc
     8341 caactcctga atagatttac tcagtgccgg ttgcgacata ttcaacattc ggctcgctcc
     8401 gcgaatgctg ccctgacgag ccacttcaac aaaagcacga atttgatgaa tttttacctg
     8461 aaaagccatg acgccaccga taaccgttat ttatcagacc aaagaaactg gcatctactt
     8521 taatgcagat gattgtgtca gggtaattta tgaacggtta aaactgtgaa aaatcagtta
     8581 gtgataagta aaaactatcg ctacgtgaac cgggtcacac tttttactga tgacgggaaa
     8641 ggttatggag tctttgaatc aatttgttaa ttcgcttgcc ccaaaattat cgcactggcg
     8701 acgtgatttt catcactatg cagagtctgg ctgggtggaa ttccgcactg ccacccttgt
     8761 tgcggaagaa ttgcagcagc tcggctattc actggcgctg ggccgcgaag tagttaatga
     8821 aagtagccgg atgggactac ctgatgaact cactctacaa cgcgaattcg agcgcgctcg
     8881 tcaacagggt gcgctagcac aatggattgc ggtttttgaa ggtggtttca ctggtatcgt
     8941 cgccaccctg gataccggtc gccccggtcc ggtgatggct ttccgtgtcg atatggacgc
     9001 gctggatctc agtgaagagc aggatgtcag ccatcgcccc taccgcgacg gttttgcgtc
     9061 atgtaacgcc ggaatgatgc atgcctgtgg tcatgatgga cataccgcca ttgggcttgg
     9121 gctagcgcat acccttaaac aattcgagtc cggactacat ggcgtcatca aactgatttt
     9181 tcagcctgca gaggaaggta cgcgtggcgc gcgggcgatg gtcgatgcag gtgtcgtaga
     9241 tgatgttgat tattttactg ccgtgcacat tggcactggc gtacctgcgg gcaccgtggt
     9301 gtgcggcagt gataatttta tggcaaccac caaatttgac gcgcacttca ccggtaccgc
     9361 cgctcacgca ggcgcaaaac cagaagacgg tcacaatgcc ttgttggcgg cagcacaagc
     9421 cactcttgca ctgcatgcaa tcgccccgga gcttccagag taaacgtggg cgttatgcag
     9481 gcaggaagcg gtcgtaacgt tgttcctgcc tcggcgttgc tgaaagtgga aacacgcggg
     9541 gccagcgacg tcattaatca atatgttttt gaccgtgcac aacaagcgat tcagggcgca
     9601 gcaaccatgt atggtgtcgg cgttgaaact cgtctgatgg gtgcagctac cgccagttct
     9661 ccttcgccgc aatgggtcgc atggttgcaa agtcaggcgg ctcaggtcgc ggggggcaat
     9721 caggccattg aacgtgttga agcgcctgcg ggttccgaag atgccacatt aatgatggcc
     9781 cgcgtgcagc aacatcaagg gcaagcctcc tacgtggtgt ttggcacaca gctggcggca
     9841 ggtcatcaca acgaaaaatt cgattttgac gagcaggttc tcgctattgc cgtcgaaacg
     9901 ctggcgcgca ccgcgctcaa ttttccctgg acgcgaggta tctgatgcag gaaatctatc
     9961 gttttatcga cgatgcgatt gaagccgatc gccaacgtta taccgatatt gccgatcaaa
    10021 tctgggatca tccagaaaca cgttttgaag agttctggtc agcggagcat ctggcttcgg
    10081 cgctggaatc tgcaggcttc accgttaccc gcaacgtagg ctatatccca aatgccttta
    10141 ttgcttcgtt tggtcaaggc aaaccggtta tcgccctgct gggagaatat gacgccctgg
    10201 caggtttaag tcagcaagca ggttgcgcgc aacctacatc cgtgacgccc ggtgaaaatg
    10261 gtcacggttg cggacacaat ttgctgggaa ccgccgcctt tgccgctgca atagccgtca
    10321 agaaatggct ggaacaatat gggcaaggcg gcacggtgcg cttttatggt tgtcctggcg
    10381 aagaaggcgg ctcgggtaaa acgttcatgg ttcgcgaggg ggtatttgat gatgtggatg
    10441 cggcactcac ttggcacccg gaagcctttg ccggtatgtt caatacccgc acgctggcaa
    10501 acattcaggc atcatggcgc tttaaaggga tcgcagcaca tgccgcgaat ttccctcatt
    10561 tgggacgcag cgcccttgat gccgtaacgt tgatgaccac tggcaccaac ttcctcaacg
    10621 aacatattat tgaaaaagcg cgcgtacact atgccatcac aaatagcggc gggatctcgc
    10681 ccaacgtggt ccaggcgcag gcagaagtgc tttatcttat ccgcgccccc gaaatgaccg
    10741 acgtgcagca tatttatgat cgggtcgcca aaatcgccga aggtgcggca ttgatgaccg
    10801 aaaccacggt tgaatgccgc ttcgacaaag cctgttccag ttatctcccg aatcgcacct
    10861 tagaaaatgc catgtaccat gccctatccc attttggtac cccggaatgg aactccgaag
    10921 aactggcttt tacgaaacaa attcaggcta cgctcccccc caacgatcgg caaaacagtc
    10981 tgaataatat cgccgcaacc ggtggcgaaa acggcaaggc ttttgcacta cgtcatcgtg
    11041 aaacggtact ggcgaatgag gtcgctccat atgccgccac cgataacgtg cttgcggcat
    11101 cgactgatgt cggcgacgtc agttggaaac tgcctgttgc ccagtgtttc agcccctgtt
    11161 ttgccgtcgg tacaccgcta catacgtggc aactggttag ccaggggcga acatctattg
    11221 ctcataaagg aatgctgctg gcggcgaaaa ctatggcagc aaccacactc aatctcttca
    11281 ttgattcagg gctattgcaa gaatgccaac aagagcatca gcaagttacg gacacgcaac
    11341 cgtatcactg ccctatccca aaaaacgtga cactgtcatc tttaaaataa caacaacaac
    11401 gcaaacacaa caaccgagga atgcccatga gtatgtcatc cataccgtcg tcctcctaat
    11461 ccgggaagct ctatggctgg gtcgaaagaa ttggtaacaa ggttccccat ccttttttgc
    11521 tctttatcta tttgattatc gtactcatgg tgacgacggc aattttgtcg gcctttggcg
    11581 tcagtgcgaa aaacccgacc gatggaacgc cggtggtggt gaaaaacctg ctcagtgtgg
    11641 aaggattaca ctggttttta cccaatgtta ttaaaaactt tagcggtttt gctccacttg
    11701 gtgcgatcct ggcgctggtt ttaggtgccg gtctggcgga gcgcgtcggc ttactgccag
    11761 cgctaatggt taaaatggca tcgcatgtta atgtccgcta cgccagttat atggtgctgt
    11821 ttattgcttt tttcagccac atttcttccg atgcggcgtt agtgatcatg ccaccgatgg
    11881 gtgcgctgat ttttctggcg gtgggcaggc atccagttgc aggtttactg gctgccattg
    11941 caggcgtagg ttgcggcttt acggctaatt tactgattgt cacaaccgac gtgttgctgt
    12001 cggggatccg cacggaagcg gcggctgcgt tcaatccgca aatgcacgtc agtgtaattg
    12061 ataactggta ttttatggcc agctccgtag tcgtactgac gattgttggc ggcctgataa
    12121 ccgacaaaat catcgagcca cggttaggtc aatggcaggg aaacagcgat gagaaactgc
    12181 agacattgac cgaaagtcag cgttttggtt tacgcatagc aggtgtcgta tcgctacttt
    12241 ttattgctgc gatcgcgctg atggtgatcc cggaaaacgg gatattgcgc gatccgatta
    12301 atcacaccgt gatgccatca ccctttatta aaggtatcgt gccactaatc attctttttt
    12361 tctttgtggt ttcgctggct tatggcatcg ctacccgcac aattcgacat caggcggatt
    12421 taccgcattt aatgattgaa ccgatgaaag agatggcggg atttatcgtg atggtttttc
    12481 ccctcgccca gtttgtcgcc atgtttaact ggagcaacat ggggaaattc atcgccgtgg
    12541 ggctgaccga tatactggaa agttcagggc ttagcggcat cccggcgttt gtcggtctgg
    12601 cgttgctttc ctctttctta tgcatgttta ttgccagtgg ttccgcaatc tggtcgattc
    12661 tggcccccat tttcgtacca atgtttatgc tacttggctt tcacccggca tttgcgcaaa
    12721 tcctctttcg tattgccgac tcatccgtat tgcctttagc gccggtatct ccttttgttc
    12781 cactgtttct tggattcctg caacgctaca aaccagacgc gaaactgggt acttactatt
    12841 cgttagtctt gccctatccg cttatctttt tggtggtatg gctgctgatg ttgctggcgt
    12901 ggtatcttgt tggtctgccg ataggtccgg ggatttaccc acgtttgtct taagagagaa
    12961 cggatgctga gattacttga agaaaaaatt gccacgccac tgggtccact gtgggtgatt
    13021 tgcgatgagc aatttcgcct gcgggcggtt gaatgggaag agtacagcga acgcatggtg
    13081 cagctgctgg acatccatta tcgcaaagaa ggctatgagc gcatttctgc caccaaccca
    13141 ggcggtttaa gcgacaagct tagtgattat tttgccggta atcttagcat tattgatacg
    13201 cttcccactg ccacaggggg gacgccattt cagcgcgaag tctggaaaac tctacgcact
    13261 atcccctgcg ggcaggtaat gcattacggc caactggctg aacaattggg ccgccctggc
    13321 gcggcgcgtg ccgttggtgc ggcaaacgga tcgaatccca tcagcatcgt cgtaccttgc
    13381 catcgggtta ttggccgaaa cggcaccatg accggatatg caggcggagt tcagcgaaaa
    13441 gagtggttat tgcgccacga aggttatctt ttgctgtaaa cattaaacaa tttgtgccag
    13501 cttgttcaca cttttatgta aagttaccct taacaactta atggttttca aatagataga
    13561 catatattta catctaatat cggaattctc tgctgttaag gtttgcttag acttacttgc
    13621 tccctaaaaa gatgttaaaa ttgacaaata tcaattacgg cttgagcaga cctatgatcc
    13681 cggaaaagcg aattatacgg cgcattcagt ctggcggttg tgctatccat tgccaggatt
    13741 gcagcatcag ccagctttgc atcccgttca cactcaacga acatgagctt gatcagcttg
    13801 ataatatcat tgagcggaag aagcctattc agaaaggcca gacgctgttt aaggctggtg
    13861 atgaacttaa atcgctttat gccatccgct ccggtacgat taaaagttat accatcactg
    13921 agcaaggcga cgagcaaatc actggtttcc atttagctgg cgacctggtg ggatttgacg
    13981 ccatcggcag cggccatcac ccgagcttcg ctcaggcgct ggaaacctcg atggtatgtg
    14041 aaatcccgtt cgaaacgctg gacgatttgt ccggtaaaat gccgaatctg cgtcagcaga
    14101 tgatgcgtct gatgagcggt gaaatcaaag gcgatcagga catgatcctg ctgttgtcga
    14161 agaaaaatgc cgaggaacgt ctggctgcat tcatctacaa cctgtcccgt cgttttgccc
    14221 aacgcggctt ctcccctcgt gaattccgcc tgacgatgac tcgtggcgat atcggtaact
    14281 atctgggcct gacggtagaa accatcagcc gtctgctagg tcgcttccag aaaagcggta
    14341 tgctggcagt caaaggtaaa tacatcacca tcgaaaataa cgatgcgctg gcccagcttg
    14401 ctggtcatac gcgtaatgtt gcctgatttt tccgcataac tcactatcct tctgtcatat
    14461 cattaaattt ttctgattta ttgatctggc agaaggttca tcactgtttc attcaccaga
    14521 tatgggttaa tcttttaatt acaaactgcg ttgacagttg ttgtaaggag accctgtatg
    14581 gctatgtatc agaacatgct cgttgttatc gatcctaacc aggacgacca accagcattg
    14641 cggcgagctg tttatttaca tcaacggatt ggtggcaaaa ttaaagcctt tttgccgatc
    14701 tatgacttct catacgaaat gaccaccctg ctctccccgg acgaacgtac cgctatgcgt
    14761 cagggcgtca tcagccagcg tacagcctgg atccacgagc aggcaaaata ttatctcaat
    14821 gctggcgttc ccattgaaat taaagtggtc tggcataacc gtcctttcga agccatcatt
    14881 caggaagtga tcagcggcgg gcacgatttg gtgctaaaaa tggcgcacca acatgaccgt
    14941 ctggaagcgg tgatttttac gccaacggac tggcatctgt tacgcaaatg cccaagcccg
    15001 gtgtggatgg tgaaagacca gccgtggccg gaaggaggta aggcgctggt ggcggtgaat
    15061 ctcgccagtg aagagccgta tcataatgcg ctcaatgaaa aactggtcaa agagacgatc
    15121 gaactggcag aacaagtcaa ccataccgaa gttcatctgg ttggcgctta cccagtaacg
    15181 ccaattaata tcgcgattga actgccggaa tttgagccga gcgtttataa cgatgccatt
    15241 cgtgggcaac atttgctggc aatgaaagcc ctgcggcaga aattcggcat taatgaaaac
    15301 atgacgcacg tagaaaaagg tctgcccgaa gaggttattc ctgatttggc ggagcactta
    15361 caggcgggga ttgtggttct gggcacggta ggacgcaccg gtatttcagc agcattcctc
    15421 ggcaacacgg cggaacaggt gattgatcat cttcgctgcg atctgttggt cattaaacct
    15481 gaccagtatc agacacccgt tgaactggat gacgaagaag acgattaacg actcttcaat
    15541 aactgacaag gcccgagtta tcgggcctat tttttactta ctgctcttcg ccgccaagga
    15601 aataaattcc caacgggatt gccagcaaca cagtaaagac caggctataa acaaaaatca
    15661 tcgatgactg aatcacatac attgatgtcg tccact
//
LOCUS       DAJVUY010000096        15614 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.096, whole genome shotgun sequence.
ACCESSION   DAJVUY010000096 DAJVUY010000000
VERSION     DAJVUY010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15614
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.096"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..245)
                     /locus_tag="OQQ72_002678"
     CDS             complement(<1..245)
                     /locus_tag="OQQ72_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000100290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS2012349.1"
                     /translation="MSSWLAMLQDAAEMFVFLAVELSLLFIVISAGVSLIRQKVPDHK
                     IQQMMGARKGRGYLLAALLGAVTPFCSCSTIPMLRGL"
     gene            352..648
                     /locus_tag="OQQ72_002679"
     CDS             352..648
                     /locus_tag="OQQ72_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2012350.1"
                     /translation="MQLEEVAKALKELGHPTRLFIFKHLVKAGEQGLPVGELQKQLGI
                     PGSTLSHHISALVSVGLVKKNRESRTLMCVSQYAMLEAIIEFLREECCVNSKIA"
     gene            complement(782..1207)
                     /gene="arsC"
                     /locus_tag="OQQ72_002680"
     CDS             complement(782..1207)
                     /gene="arsC"
                     /locus_tag="OQQ72_002680"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HCS2012351.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(1220..2509)
                     /gene="arsB"
                     /locus_tag="OQQ72_002681"
     CDS             complement(1220..2509)
                     /gene="arsB"
                     /locus_tag="OQQ72_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HCS2012352.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(2564..2917)
                     /gene="arsR"
                     /locus_tag="OQQ72_002682"
     CDS             complement(2564..2917)
                     /gene="arsR"
                     /locus_tag="OQQ72_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HCS2012353.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNICS"
     gene            3656..3739
                     /locus_tag="OQQ72_002683"
     CDS             3656..3739
                     /locus_tag="OQQ72_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HCS2012354.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3793..5145)
                     /gene="gorA"
                     /locus_tag="OQQ72_002684"
     CDS             complement(3793..5145)
                     /gene="gorA"
                     /locus_tag="OQQ72_002684"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HCS2012355.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSEHLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(5217..6059)
                     /gene="rlmJ"
                     /locus_tag="OQQ72_002685"
     CDS             complement(5217..6059)
                     /gene="rlmJ"
                     /locus_tag="OQQ72_002685"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase"
                     /protein_id="HCS2012356.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            6262..8304
                     /gene="prlC"
                     /locus_tag="OQQ72_002686"
     CDS             6262..8304
                     /gene="prlC"
                     /locus_tag="OQQ72_002686"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HCS2012357.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            8312..9064
                     /gene="rsmJ"
                     /locus_tag="OQQ72_002687"
     CDS             8312..9064
                     /gene="rsmJ"
                     /locus_tag="OQQ72_002687"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HCS2012358.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(9113..10582)
                     /gene="dtpB"
                     /locus_tag="OQQ72_002688"
     CDS             complement(9113..10582)
                     /gene="dtpB"
                     /locus_tag="OQQ72_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HCS2012359.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINSVSFQALNPFWVVLASPILAGIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10900..11334)
                     /gene="uspA"
                     /locus_tag="OQQ72_002689"
     CDS             complement(10900..11334)
                     /gene="uspA"
                     /locus_tag="OQQ72_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HCS2012360.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11725..12060
                     /gene="uspB"
                     /locus_tag="OQQ72_002690"
     CDS             11725..12060
                     /gene="uspB"
                     /locus_tag="OQQ72_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HCS2012361.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(12303..13802)
                     /gene="pitA"
                     /locus_tag="OQQ72_002691"
     CDS             complement(12303..13802)
                     /gene="pitA"
                     /locus_tag="OQQ72_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HCS2012362.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            14034..15236
                     /locus_tag="OQQ72_002692"
     CDS             14034..15236
                     /locus_tag="OQQ72_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HCS2012363.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(15551..>15614)
                     /locus_tag="OQQ72_002693"
     CDS             complement(15551..>15614)
                     /locus_tag="OQQ72_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2776 family protein"
                     /protein_id="HCS2012364.1"
                     /translation="AVCFTLFSIVSILEAGSAKK"
BASE COUNT         3945 a         3992 c         4086 g         3591 t
ORIGIN      
        1 aacaatccac gtaacatggg tattgtcgag caactacaga acggggtaac ggctcccaac
       61 agagcagcca ggagatagcc tctccctttt ctggccccca tcatctgctg gattttatgg
      121 tctggcacct tttgtcttat caggctgaca ccggcactaa tcactataaa cagcaacgaa
      181 agctcgacgg cgagaaacac aaacatctct gcggcatctt gcagcatcgc aagccaacta
      241 ctcatacgta acctcattgg ataaatctat atttccagaa taatcgaaat gaaattcaga
      301 tcaagatatt tctggtatta tcgaaatatc aaccagacag aggggtgtca tatgcagttg
      361 gaagaagtcg ctaaagcgct gaaagagcta ggtcacccga cccgtttgtt catatttaaa
      421 catcttgtca aagccgggga acaagggttg ccggtcggtg agttgcaaaa gcagcttggg
      481 atacctggct ccacactcag ccaccatata tcagcactgg tatcggtagg actggtcaaa
      541 aaaaaccgtg agagtcggac gctgatgtgt gtttcgcaat acgcaatgct ggaagcgata
      601 attgaattct tacgcgagga gtgctgcgta aatagcaaaa ttgcctgatg cgctacgctc
      661 tacatatttc atgccatata ttgaatttgc acggttttgt aggtcggata agacgcgtta
      721 gcgtcgcatc cgacataaac aaagcgcact ttaccaacta tcggcagtgg atatcgccgc
      781 tttatttcag gcgcttaccc gcttcatcaa ccactttctc gccatcttcc ttggagaatg
      841 cgcctttttg cgcatctggc agaatttcca gcaccacttc tgaagggcgg cacaggcgag
      901 ttcccagcgg cgtcaccaca atcgggcgat taatcagaat cgggtgctga agcataaagt
      961 cgattaaccg atcgtcagta aatttatctt ccgcaaggcc cagctcctca tacggttcga
     1021 cgtttttacg cagcagcgcg cgtacggaaa tccccatatc ggcaatgagt ttgaccagtt
     1081 catcgcgcgt tggcggagtt tccagataat ggataatggt cggttctgtg ccgctgttgc
     1141 ggatcatctc cagcgtatta cgcgacgtgc cgcaggccgg gttgtgataa atggtaatgt
     1201 tgctcatatc agtatctcat tacaaagtga aagagagacg tagcgccagc gcagccagcg
     1261 tcacaaacag cacaggcagg gtcatgataa tccctgtacg gaagtaatat ccccagctga
     1321 tagtcatatt cttctgcgaa agtacgtgca gccagagtag tgtagccagg ctaccaattg
     1381 gggtaatttt cggtcccaaa tcgcagccaa tcacattggc ataaaccatc gcttctttga
     1441 taacgccaga tgccgtgctg ccatcaatgg acaacgcgcc aaccagtacc gtcggcatat
     1501 tgttcataat agaagagagg aaggcggtga ggaatccggt gccgagcgtc gcggcccaca
     1561 ggccgttatc cgccagcacg ttgagtacgc cagaaagata ttccgttaat ccggcattgc
     1621 gcaggccata aaccaccaga tacatgccga gcgagaagat gacaatttgc cagggggcac
     1681 cgcgcaggac tttacccgta ttaatcgcat gaccgcgttt agcgacgaca aataatatca
     1741 gcgcgcccac agctgcaatg gcgctcaccg gaatgccgag cggttccagg acgaaaaatc
     1801 ccaccagcag aagcagtaaa acaacccagc cagttttgaa cgtagcagga tctttgatcg
     1861 cttctgcggg agatttcagc agcgccatat cgtagttctg cggaatatct ttgcgaaaat
     1921 agagatgtag catcaccagc gtggcaacaa tcgcggcgat atccaccggc accatcaccg
     1981 aggcgtattc gcgaaagccg aggccaaaga aatcagcgga aacgatattc accaggttgg
     2041 agacaataag cggcaggctg gcggtatcgg caatgaatcc ggccgccatc acgaacgcca
     2101 gcgtcgtgcc tttactgaat cctaaagcca gcagcatggc gatgacaatc ggcgtcaaaa
     2161 taagcgctgc gccatcattg gcaaacaggg cggcaacggc agcaccgagc aggacaatcc
     2221 aggtaaacag caagcgacca cgaccattac cccagcgtga gacgtgcagc gccgcccatt
     2281 caaaaaagcc ggactcatcc agcagcaggc tgatgataat gacggcgata aacgcagccg
     2341 tcgcgttcca gacgatattc cacaccaccg gaatatcacc cggatggacc acgcccgtaa
     2401 ctaacgccag tactgcgccg agcgttgcac tccagccgat gcctaaacct ttcggctgcc
     2461 agataaccaa tacaatggtc aggacaaaga tagcgcctgc cagtaacata atgcctcctg
     2521 gataaaacac atgcgaaaat acatatgtgt ttagctaaat tttttaactg caaatgttct
     2581 tactgtctgc ggaacagttt tgtcgagcca ggttgcggac aattgcctga atcttttcct
     2641 gttcacatcg ccaggcttca tcaattattt tcgccgccca tgctggaata tgcggcgata
     2701 agcggtaatg aacccattta ccttgcttgc ggtccagcaa tagcccgctt tcacgcagca
     2761 atgccaggtg gcgggagatc ttgggctgcg actggtcgag agcagtgcag agatcgcaga
     2821 cgcataactc tcccagttcg ctgagcagta aaacgatgcc cagacgggtt tcatcagcaa
     2881 gaattttgaa caattggatg ggtaacagaa atgacatatt gcgctcctga ttgttgcagg
     2941 tagtgtctct cttcgaagcg gataagtcaa aaacatatat gatttaacga atgtgtaagt
     3001 gcagaggaag gtaataggtg tgaattttga gttggctatt catttgaaag gaggtctgaa
     3061 tcaggacgta aaaaaaccga ctttgcgtcg gttttttact ttccagccct gagttggtgg
     3121 ctctggctgg agtgagagag ttcttatcta acagctcaat actattagcc agtggctaac
     3181 attgcaagaa ttagcgattt cttcagctgg cggagggagc acttcggtat atatcgcagt
     3241 gacgatttat atactttcac tgggtcatcg tcatattaag ccttgtccga atccggatgt
     3301 aaaaaaccga ctttgcgtcg gttttttact ttccagccct gagttggtgg ctctgactgg
     3361 agtgagatag ccatcatcta acgcatcaat gctaatacca tactgaaact attgcaagga
     3421 cgtgctggtt ttataacctg catgtactgt atgattatcc agttagctct gaggcatttt
     3481 cactctggca atgcgcataa acgctttcaa agtcctggtc agaagtacgg gtggtgccgt
     3541 taactgatgc tctggccgga gtgagagagt tcttatctaa caatgagaca tgcgccgtga
     3601 caggcagtgg atgagtaagc ggatgcattc tcactccatc gcatggagaa aacgggtgat
     3661 tgataaagca atcatcgttc taggggcgtt aattgcgctg ctggaactga tccgctttct
     3721 gcttcagctt ctgaactgat agcggaaacg taattaaggg ctaagagcac actactctta
     3781 gccctttaac atttaacgca ttgtcacgaa ctcttctgcc gccgttgggt gaatggcgac
     3841 ggtattgtcg aagtcttttt tggttgcccc catcttcagc gccaccgcga agccctgcaa
     3901 catttcgtcc ataccaaagc caatgccgtg aataccgaca atcttctctt ccgatccaac
     3961 gcacaccagc ttcatgcggc acggctggcg gtgagtggtg acggcggtat acatcgcggt
     4021 gaaagaggat ttatacactt tcacctgatc gtcgccatac tgctcgcgcg cctgcggttc
     4081 cgttaaacca acagtaccaa tcggcggatg gctgaagacc acggtcggaa tgttgctgta
     4141 atccagatgc tcatccggct tgttattaaa caggtgttca gagagacggc gacccgctgc
     4201 aactgccacc ggtgtcagct ccactgcacc cgtgttatcg cccaccgcgt aaataccttc
     4261 aatgttggtg ttttgatatt tatcgacgac gatatagcct ttttcgttgg ttttaacgcc
     4321 agcggcttcg aggttgatgt tgtcattggc aggctcgcga ccaatcgccc aaatcaggca
     4381 atccaccgtt tcactgcgac catcttccag ctccagcgtc aggctaccat cggcattttt
     4441 cactaccgct ttcgggatgg cgttggtgtg cagctgcggg ccttcggcgt tcatcacttc
     4501 gaccagcgtt tcggaaatca tcgggtcgaa gctgcgcagc ggcgcatgtt tacgcacaaa
     4561 cagatgcgtt ttcgcgccga ggccgttaat cacgcccgcc agctcaacgg cgatgtaacc
     4621 cgcgccaaca accgccacgc gctctggcaa agcaggaagg gcgaagaagc catcagaatc
     4681 aataccgtat tccacgcccg gaatatccgg gtggctcgga cgaccgcctg tggcgatcag
     4741 aatatgatcg gccgtgatgg tttcgccgtt tacctccagc attttggcat caacgaagcg
     4801 ggcaaagcct ttgattacat caacgttatt tttaccgagc acgttttcat aggaagtatg
     4861 aatacggtcg atataggcgg tacggctggc gatcaacgtt tcccagttga acttgttgat
     4921 ggtggtatcg aaaccataat cagggccgta catatggatc gcttcacgga tttgcgccgc
     4981 gtgccacatc acttttttcg gcacgcagcc gacgttcacg caggtgccgc ccagctcttt
     5041 ggcttcaatc agtgcgcatt tctggccgta catagccgcg cggttgatgg aggctatacc
     5101 gccgctgccg ccgccgatgg cgatgtaatc atagtgttta gtcatgacag agtgtcctta
     5161 tcgttgatta ccgcgattgt agcgcgagac gtaataggtg ccagcaatgg ctgcaattac
     5221 tccggcacga tccagcttac ggtggcgtgc ccggtgcctg ccggaaccag tttgctgtgc
     5281 agccacggca gcacgttatt catctgctgt tccagtttcc acggcgggtt aatcacaatc
     5341 atgccggaag cggtcatgcc acggcgatcg ctgtctggca gtaccgccag ttcaatttgc
     5401 agaattttgc gaataccggt cgcttccaga tcgtggatca tgcgcttaat ttgctgacgc
     5461 agcaccaccg gataccacag tgcgtaagta ccagtggcga aacgtttgta accttctgct
     5521 atcccgctga ccaccgcctg atagtcggtt ttcatttcat acggcgggtc gataaggatt
     5581 aaaccacggc gggaaaccgg cggcagtttg gccttaagct gctggaaacc atcggctttt
     5641 tcgacgcgcg cacggctgtc tttctgaaat tcagaacgca gcaacgggta atcgctcggg
     5701 tgcagttcgg tcagttgcag gctgtcttgt tcgcgcagta gctggcgagc aatcaatggc
     5761 gaaccggggt agtaacgcaa ctgaccgcta cggttgaagt gttttaccac attgatgtac
     5821 gcctccagtt ctgcgggcaa atcgtcctgc tgccagatac gggcgatgcc ttcgagatat
     5881 tcgccggtac gctcggcatg ttcgctgcct aactgataac gcccggcccc tgcgtgggtg
     5941 tcgagataga gaaacggttt atctttctct ttcagcgact cgatgatcag gctctgaacg
     6001 gtatgtttaa ggacgtcggc gtggttgcca gcgtgaaagc tgtggcgata actgagcatg
     6061 ggtaaaggtg ttccggtaag taaaaatcgg cccgtattcg gggcgcacaa aagcgtatca
     6121 ggacagtata ccgaaaagag gccgccgccg cgaaagcgta acgtttctca ttgaaattca
     6181 ctacacttaa ccccatgcta cacacattat gtaaagcgcc tgttgagcgc ttccttaacc
     6241 tctttaacca ggactgcgcg aatgacgaat ccgttactga ctccctttga attgcctccg
     6301 ttttctaaaa ttctcccgga acatgtcgtt ccagccgtga ctcaggcgct gaacgattgc
     6361 cgcgaaaatg tggagcgcgt agtagcgcaa ggggcaccgt acacctggga aaatctctgc
     6421 cagccgttgg cggaagtgga cgatgtgttg gggcgtatct tctccccggt cagccacctg
     6481 aactcggtga aaaatagccc ggaactgcgt gaagcctacg agcaaaccct gccgctgctg
     6541 tcggaataca gcacctgggt agggcaacat gaagggctgt ataaagcgta ccgcgacctg
     6601 cgcgatggcg atcattacgc cacgctgaac acggcgcaga agaaagcggt tgataacgcc
     6661 ctgcgtgatt ttgaactctc tggcataggt ctgccgaaag agaaacagca gcgttacggc
     6721 gaaattgcga cccgtctttc tgaactgggc aaccagtaca gcaacaacgt cctcgatgcg
     6781 acaatgggct ggaccaaact cgttaccgac gaagcggagc tggcggggat gcctgaaagc
     6841 gcgctggctg cggcaaaagc ccaggccgaa gcgaaagagc tggaaggcta cctgctgacg
     6901 ctggatatcc caagctacct gccggtaatg acctactgcg acaaccaggc cttgcgtgaa
     6961 gagatgtatc gcgcttacag cacccgcgcc tccgatcaag gcccgaacgc cggtaaatgg
     7021 gataacagca aggtgatgga agagatcctc gctctgcgtc acgaactggc gcaactgctg
     7081 ggctttgaaa actacgcctt taaatccctt gccactaaaa tggcagaaaa cccgcagcag
     7141 gtgctggatt tcttaaccga tctggcaaaa cgcgcgcgtc cgcaaggcga aaaagagctg
     7201 gcacaactgc gcgccttcgc caaagcggaa tttggcgtcg atgagttgca gccgtgggat
     7261 atcgcgtact acagcgaaaa acaaaaacag cacctctaca gcatcagtga cgaacagctg
     7321 cgtccgtact tcccggaaaa caaagcggtt aacggcctgt ttgaagtggt gaaacgtatt
     7381 tacggcatca ccgctaaaga gcgtaaagat gttgatgtct ggcatccgga tgtacgtttc
     7441 ttcgaactgt atgacgagaa caacgaactg cgcggcagct tctacctcga tctgtatgcc
     7501 cgtgaaaaca agcgcggcgg ggcgtggatg gatgactgcg taggccagat gcgtaaagct
     7561 gacggttctc tgcaaaaacc ggtcgcgtat ttgacttgta acttcaaccg cccggtaaat
     7621 ggtaaaccgg cgctgttcac tcacgacgaa gtgatcaccc tgttccacga gttcggtcac
     7681 ggcctgcacc atatgctgac ccgcatcgaa accgctggtg tttccggtat cagcggtgtg
     7741 ccgtgggatg cggtcgaact gccgagtcag tttatggaaa actggtgctg ggagccggag
     7801 gcgctggcgt ttatctctgg tcactatgaa accggcgaac cgctgccgaa agagttgctg
     7861 gataaaatgc tggcggcgaa gaactaccag gcggcgctgt ttattctgcg ccagctggag
     7921 ttcggcctgt tcgatttccg cctccatgcc gagttccgcc cggatcaggg tgcgaaaatc
     7981 ctcgaaactc tggcagaaat caagaaactg gttgccgtag taccgtctcc atcctggggc
     8041 cgtttcccgc acgctttcag ccatattttc gccggtggtt atgccgcagg ttactacagc
     8101 tacctgtggg ctgacgtact ggcggcagat gccttctcgc gctttgagga agagggcatt
     8161 ttcaaccgtg aaaccgggca gtcgttcctc gacaacattc tgagccgtgg cggttcagaa
     8221 gagccgatgg atctgttcaa acgcttccgt ggtcgtgaac cgcagctgga tgcgatgctg
     8281 gagcattacg gcattaaggg ctgatcattc agtgaaaatc tgcttaattg atgaaacagg
     8341 cgccggagac ggcgccttat ctgttctggc ggcccgctgg gggctggagc acgatgaaga
     8401 caacctgatg gcgctggtgt taacgccgga acatctggaa ttgcgcaagc gtgatgagcc
     8461 aaaacttggc ggcatctttg ttgattttgt tggcggagcg atggcgcacc gacgcaaatt
     8521 cggcggtggt cgcggtgagg cggtggcgaa agcggtgggc attaaaggcg attatttgcc
     8581 ggatgtggtg gacgccaccg cagggctggg gcgcgatgcc tttgtactgg cttcagtcgg
     8641 ctgccgcgtg cggatgctgg agcgtaatcc agtggttgcc gcgctactcg acgacggcct
     8701 ggcgcgtggt tatgcggatg cggaaatcgg cggctggttg caggagcggt tgcagttaat
     8761 tcacgcctcc agcctgacgg cgctaaccga tattacccca cgcccgcagg tggtctatct
     8821 cgatccgatg ttcccgcata agcagaaaag cgcgctagtg aaaaaagaga tgcgtgtctt
     8881 tcagtcgctg gtgggaccgg atcttgatgc cgatggatta ctggagcctg cacgcttgct
     8941 ggcgaccaaa cgcgtggtgg taaagcgccc ggactacgcg ccaccgctag cgaatgtcac
     9001 cacgccaaac gcggttgtga ctaaagggca tcgctttgat atctatgcag gtacgcccgt
     9061 gtaaaagtaa agcagggtag cgataacgct accctgcttt ctgcaagaat aattaatggc
     9121 tttccggcgt cgcaatcatg cgtttcagcc acggcaccat caacagcatc actactgcaa
     9181 cgcccagcgt gaccagacca atcttaccaa acacgttggt atagacgggc aacgtctcaa
     9241 gcggatcggt aatgttgtcc ggcaccgcgg taaatgttgc cacatagccg cccagcaaga
     9301 acgcggcagc ctgcgtcagg aaccacatcc cgagaataaa gcccatcaaa tgctgcggca
     9361 ccagggcagc aatcatcgcc aggccaaggg cgctaataaa cagttcacct aagctctgga
     9421 ataagtacac cagcacgata aaccatggcg atgtcagccc ttgtgcatcc gcaaaccaca
     9481 ttcccgcagc tgccgccgtc aaaaagccca gtgagcacat aaacatgccg agagtaaatt
     9541 tcatcggcat cgagaggtct ttgcctttgt tacccagatg cgtgtaaatg cctgccagta
     9601 ttgggctggc gagtaccacc cagaacgggt taagcgcctg gaagctgacc gagttgatgg
     9661 aaaaaccgag aatttcatga tgcacgttgt tgatggcaaa gaagttcagc gatgttggca
     9721 tctgggcgta gagaatgtaa aacaccaccg cttcgagcat caggacaaag gcgacaaaca
     9781 ttttattgcg cccggtttta tccagcttga atgcctgacg aaagaagatg atggtgacga
     9841 cgatggagag aacaatcagc accagattgg cgacttctac gttgtgcatc agccatgcac
     9901 atacgaagat catcaccacg ctgccaagta atacgtacaa cagtttgctg aagctcatcg
     9961 gcttgaagtc gggttcagaa ccaatgtctt tcaccattcc acgacaggcg atgtaaacca
    10021 gtaatgcgat aattaacccc gccccgcaca ggttgtaggt gactgaataa ccgaatctat
    10081 cagcgatcac aggggccagc gataacgcta tcaacgagcc gatattgatc gacatataga
    10141 acagggtgaa tgcgccatca agccgcggat ctttcggcgg atagcacttc gaaagcaagc
    10201 tggctgggtt agctttaaac aggccgttac cgacagcgat agtccccagg gcgatgaaaa
    10261 tcaggtcagg cttaagtagc gacatgccgg tcatgaagta gccaatcgcc agcacaagtg
    10321 ctccgagaac aatggtgcgt ttggtcccca gcaggtggtc gccgacatag ccgccaatgg
    10381 aaatgaggcc atagaccagc gcagcaaaag caccaaaagt gacaaaagcc tgctcttgcg
    10441 agaatccaag ctgtttaacg aagaaaaccg ccagtacgcc ctgcacgccg tagtagccga
    10501 atcgctccca taactcgaca aaaaagatca tgaaaaatgg gcgaggttgc tgcagcatcc
    10561 ccatgggtgt tgttgtattc atatttatta accttccaat accatcctga aaagtatgaa
    10621 cgcgtaaggg ataacgcgcg aaaaagttta catctgtcag agattcttaa tattgatgcg
    10681 gtgaatggat taatacacta ttacaacaga aaataaccag ctaatcacac taatgatgga
    10741 aaatatgatg gtgttaaatg ttgtattggc aggagatttt gattgcgtac gcagatcgta
    10801 ggccagataa ggggtttacg ctgcatcagg taacaaggcg cgccaaaaag caaaacgccc
    10861 gcatatgcgg gcgttcagga acacgtcgtg gagggaagat tattcttctt cgtcgcgcag
    10921 cggaacaatc agcatatcaa cgtgaacggt gttgatcagc tgacgtgcgg aagacatcag
    10981 tttgctccag aagtcctggt ggtgaccaca aaccaccaga tccatatcgt atttcttgat
    11041 tgcatcgacc agaacctggc ccaggtcgcc gctgccgctc agggtttcag tgattgggta
    11101 gcctgcatta gtggaaagct cggtcagcgc atgatgtgtc tcttcagaga tgcgtttctg
    11161 catatcaccc agattcacat caataagccc ggtgtatagg tcagagtagt ttacatctac
    11221 gtggatcaga gaaactttcg cattgtaggg gcgagccata gagactgctt tctctaccag
    11281 aactttgctt tccggggaga gatcgaccgc gatgagaatg tgtttataag ccatagtgtt
    11341 actccttcca taaagttgtc gatgactggc cagctagcgt ttcttgtgcc gttacgtcac
    11401 ccgcgtcctg cgaactacgt gcgcggggct aacccagccg taaagattca gtgttaagac
    11461 catccttacc ttatagcgac ccggatgatc cgtcaatccg ccttgcttac ccgttagata
    11521 aacaaatttt cgacatgaat atattgatag tggttaacct tctggaaaaa aaacaacctg
    11581 atctcctaca ctatctatag agccgctcgg atgttggtca ccacaaaagc ggtttctcca
    11641 ggacctggtg ttaactgatt ggcagcgtat cgggagcggt agccccgggg tggaactccg
    11701 cgggcaggtc gccggggagg aggtatgata agcaccgtcg cattattttg ggctttatgt
    11761 gtcgtttgca ttgttaacat ggcgcgctat ttctcatcac tacgcgcgtt gttagtggta
    11821 ctgcgtaact gcgatccatt gctctatcaa tatgttgatg gagggggctt ttttacctca
    11881 catggccaac ccaacaaaca ggtgcgtctc gtttggtata tctatgccca acgttatcgc
    11941 gatcatcacg atgatgagtt tattcgccgc tgtgagcggg tgcgtcggca gtttattctg
    12001 actagcgcat tgtgtggtct ggtggtggtc agcctgattg cattgatgat ttggcattaa
    12061 gcacttcagc aataataacg cataaaaaaa gctggccagt aaactgaccc gctcgagact
    12121 gattacaaac gcaaaattgc ctgatgcgct acgcttatca ggcctgcata atctctgcaa
    12181 tctattgaat ttgctgtttt tgtaggccga ataaggcgtt cacgccgcat ccggcatgaa
    12241 caaagcgcac tatgtcacaa tctgaagcgg gccagctgac ccgctcgttt tggtgcgtac
    12301 gattacagga actgcaagga gagccagtac agcccgccgg aaagcagtac cgcagccgga
    12361 agggtaaaca cccaggccat cagaatgctg gtcacggttt tacgctgtaa gccgccacca
    12421 tctaccacca tcgtccccgc gacagaagag gagagtacgt gagtagtgga aaccggcatc
    12481 ccggtataac tcgccaggcc gatagacact gccgccgtca tctgggcaga catcccctga
    12541 gcgtaggtca tgcctttctt accgattttc tcaccgatag tcgttgccac acgacgccag
    12601 ccaatcatcg taccgatacc taacgccagc gcgaccgcca tgatgatcca caccggtgca
    12661 tactcgatgg tgctaagcat gtcggacttc agtttcttca acaggcgctg atcgtcagca
    12721 ctcacgccag gtatcttcac tactttgtcg atagtgtcag aaacgcacag cataatgcgg
    12781 cgcatctggc tacgttgatc aagcgacagc ttgtcgtagc tttccacatc ggtagttaac
    12841 atacctttca ggcggttgag cgcgttaatg gtattcgacg gatggcaatg gaactccgcg
    12901 ggttgcgttg cgccagcttc cggagccggt actaactgat cagcaccggt agcctgtttc
    12961 agcagcgcag gatgctgctc aaagtaagct tcgacgttgt tgatggcatc acgggtacgg
    13021 gtgatttcgt agccagtggc attcatattc accacgaagc ctgctggtgc gacaccaatc
    13081 aataccaaca taaccagacc aatgcctttc tgaccatcgt tcgcgccgtg cgaaaacgcc
    13141 acgccgatag cggaaaggat cagcgcaata cgcgtccaga acggcggctt tttcttgccg
    13201 tctttctttt cacgctccgc tggggtcagg tggatacggg cgcgtttctt ggtgccgctc
    13261 cagtagcgac gcagcaagaa aatcagaccg ccagcaaaca ccaggccgac aataggggaa
    13321 acaatcagag aaccgaaaat acttaatact ttcgggatat tgagtgcatc caccactgac
    13381 gtcccggtca tcaacgcatt ggttaaacca atcccgatga tcgcgccaat cagtgtatga
    13441 gagctggatg caggtaaacc aaagtaccag gtacccaggt tccagataat cgccgccagc
    13501 aacatagaga acaccatggc aaggccatga gacgatccca tattaagcag cagatccgtc
    13561 ggcagcatat gcacaatggc ataggcaaca ctcagaccac ccagcaaaac acccaaaaag
    13621 ttgaacaccg ccgccataac cacggcgagc tgagaacgca tcgcgcgggt atagataacg
    13681 gttgccacgg cgttggctgt gtcatggaaa ccattgatgg cttcgtagaa cagcacaaaa
    13741 gccagtgcaa gcaataataa cagcccggta tgcaaatcca ggccagcaaa caaatgtagc
    13801 ataggacgtt acgccatttt gaggacatga acgcggcgca ttatcagtga ctttcgcggc
    13861 gcgggcaaag tgaaatatag actttttttg atttgcctcc tgtatggatt tcactcaaaa
    13921 aataattatc ttatataatt caggcaaata cttcctttta gtaatattga tgctggtgtg
    13981 accactgagg aatctttaca attcacgccc gttttttcta agaggagcgc aacgtggaaa
    14041 ggtttgatgc cattattata ggcgctggtg cggcgggtat gttctgttct gcgctggcag
    14101 gtcaggcagg acgccgggtt ctgctgatcg ataatggtaa aaaaccaggg cgcaaaatcc
    14161 ttatgtctgg cggtgggcgc tgcaacttta ccaaccttta tgtcgaacca ggcgcttatc
    14221 tgagccagaa tccgcatttt tgtaagtctg cactcgcgcg ttttacccag tgggatttca
    14281 ttgatctggt caataaacac ggcatcgcct ggcacgagaa aacgttagga caactcttct
    14341 gcgatgactc cgcgcagcag attgtcgaca tgctggtgga tgagtgcgag aagggcaatg
    14401 taaccttcag attgcgtagc gaagtgctga gtgtggcgaa ggatgaaaca ggcttcacgc
    14461 ttgaactgaa cggcatgact gtcggttgcg aaaagctggt catcgcgacc ggtgggctgt
    14521 caatgccggg gctgggcgca tcgccgtttg gttataagat tgccgaacaa tttggcctca
    14581 acgtgctgcc gacccgtgcg ggtctggtgc cattcactct gcataaaccg ttgctcgaag
    14641 agttacaggt gctggcgggc gtggcggtgc cttccgtgat taccgctgaa aacggcaccg
    14701 ttttccgtga gaacttactc ttcacccacc gcggcttatc tggaccggcg gtgttgcaga
    14761 tttccagcta ctggcaaccg ggtgaatttg tcagtatcaa tctgctaccg gatgtggacc
    14821 tcgaaacctt cctgaatgag cagcgtaacg cacatccgaa tcagagcctg aaaaacacac
    14881 tggcggttca tctaccgaag cggttggttg aacgcttaca gcaactcggg caaatcccgg
    14941 atgtttcgct aaaacagctc aacgtgcgtg accaacaggc actgattagc acattgaccg
    15001 actggcgcgt acaacccaac ggcactgaag gctatcgcac tgccgaagtg acgctcggcg
    15061 gcgtggacac caacgaactc tcttcacgga cgatggaagc gcgcaaagtg cctgggctgt
    15121 acttcatcgg cgaagtgatg gacgttaccg gctggctggg gggctataac ttccagtggg
    15181 cgtggtcgag tgcgtgggct tgtgcgcagg atttgattgc agcgaagtcg tcctgacctg
    15241 ttacctaaag atgaaaatta ttagagccgc attaaaaatg agctaatttt gatagtggct
    15301 atcttgtgat tattttctaa tgagcccgtg aactgaaacc ctccaggctt aatataaggt
    15361 ggaaggaaag atgattgaaa actcacccag tggccagatc tttataaaat atgaacaggc
    15421 tgaaaaagac agtaactttg ttgtttttta tccttaacca ctatgcatta atgctgcgtt
    15481 atttcatgat gcctaagaaa aaccagcgtt acgcaaatgg tcaacgctgg ttttatccgg
    15541 tacgttgcaa ttatttttta gcagaacctg cttctaatat tgaaacgatt gagaacaacg
    15601 taaagcatac cgct
//
LOCUS       DAJVUY010000097        15597 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.097, whole genome shotgun sequence.
ACCESSION   DAJVUY010000097 DAJVUY010000000
VERSION     DAJVUY010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15597
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.097"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            294..386
                     /locus_tag="OQQ72_002694"
                     /pseudo
     CDS             294..386
                     /locus_tag="OQQ72_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004120448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            390..569
                     /locus_tag="OQQ72_002695"
                     /pseudo
     CDS             390..569
                     /locus_tag="OQQ72_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            903..3182
                     /gene="ydeP"
                     /locus_tag="OQQ72_002696"
     CDS             903..3182
                     /gene="ydeP"
                     /locus_tag="OQQ72_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HCS2012365.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHTASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIEHISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            3430..3627
                     /gene="safA"
                     /locus_tag="OQQ72_002697"
     CDS             3430..3627
                     /gene="safA"
                     /locus_tag="OQQ72_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HCS2012366.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            3702..4463
                     /gene="ydeO"
                     /locus_tag="OQQ72_002698"
     CDS             3702..4463
                     /gene="ydeO"
                     /locus_tag="OQQ72_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HCS2012367.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNTVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            4865..6547
                     /locus_tag="OQQ72_002699"
     CDS             4865..6547
                     /locus_tag="OQQ72_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HCS2012368.1"
                     /translation="MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAF
                     SDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAI
                     EAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGI
                     PLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQ
                     NRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPF
                     MLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQ
                     YDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKL
                     ISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEE
                     NIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYNLTD
                     LQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK"
     gene            6599..7756
                     /locus_tag="OQQ72_002700"
     CDS             6599..7756
                     /locus_tag="OQQ72_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS2012369.1"
                     /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK
                     QYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEW
                     CSFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI
                     NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY
                     GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY
                     ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRIT
                     KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN"
     gene            complement(7722..7844)
                     /locus_tag="OQQ72_002701"
     CDS             complement(7722..7844)
                     /locus_tag="OQQ72_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012370.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            8059..9744
                     /locus_tag="OQQ72_002702"
     CDS             8059..9744
                     /locus_tag="OQQ72_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HCS2012371.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     LLDYWQNIYSRSLSVLPYFLLLPQFISGKINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            9782..12154
                     /locus_tag="OQQ72_002703"
     CDS             9782..12154
                     /locus_tag="OQQ72_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS2012372.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVVGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            12211..14994
                     /locus_tag="OQQ72_002704"
     CDS             12211..14994
                     /locus_tag="OQQ72_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS2012373.1"
                     /translation="MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMI
                     YPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMG
                     LRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVI
                     TEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQP
                     NNMTFIVVGDIDSKKALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRV
                     NGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVK
                     IAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAV
                     DQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQ
                     DAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQAEIS
                     SKETLAENLTSLTLSNGARVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIALANK
                     AVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRIT
                     HSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIVQFTA
                     ADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPLTRAT
                     DNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIREQASG
                     AYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQELNEYQ
                     QNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVKQYLS
                     HPVNTYTGVLLPK"
     gene            15356..>15597
                     /locus_tag="OQQ72_002705"
     CDS             15356..>15597
                     /locus_tag="OQQ72_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS2012374.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT         4545 a         3394 c         3411 g         4247 t
ORIGIN      
        1 tggacggtta agccgagaat acggtagtaa gtgagatatg gggtttggtc gttgttaatg
       61 agcaaccatg accgccaacg actgggttct cccttggttt atgttggtgc gcataatgta
      121 tattatgtta aatcatatct gagtgatgcg aagtgctttt ctggtagtcg ttattcgttc
      181 agggttccag aacttaagcc tctcctcttt cataattggc ctgtgcatga cggatatagg
      241 ctggctggta tgcagatttg ccgtttgccg catcttccca gcgttgaaga ctcaagctgg
      301 caaaccgcgt gcaaatgagc acgccctctt tccatcaaca cttcaggcag cttgcgggaa
      361 tgagtccact acggtatcag aaatgggaag tgggtgtctc tctgatgcgt aatggaaaaa
      421 tactggctac gggagaaaat gtctccctgg ggacagtaaa taaaagcaaa gtatctctgg
      481 gtttaagcgc aacctatgga caaacaggaa acaaggttgc agccggaacc gtccagtcag
      541 tcattggtgt cacttttatc tatgaataat tgtgattttg atcttagtct atgcgctcca
      601 ttcacgaaaa ttgcgcggat aattattttg tgaaggctat tatcctacac ctgtaagaaa
      661 atccgcgcac aattgaagcc agagtcttat tttttatatt gaaaaatatg ttaatttaaa
      721 cactatgaga gatgatgctt aacttatcgt atttaatcta ttgtttaacg ataatagatt
      781 aaaaatagaa agagagtagt cccctactct tatatatcca tgttggcgat aatccctttg
      841 tatgtactgt gcatcatcgc tattacaaat cctaataatt catttccaca caggataagt
      901 agatgaagaa aaaaattgaa tcctaccagg gtgctgcagg tggttggggt gctgttaaat
      961 ccgtagcgaa tgcagtacgt aagcagatgg atatacgcca ggatgttatt gccatgtttg
     1021 acatgaataa gccagagggc tttgactgtc cgggttgtgc atggccagat cctaagcaca
     1081 ctgcgtcatt cgacatttgt gaaaacggcg caaaagcaat cgcctgggaa gtcacggata
     1141 agcaggtaaa tgcctctttc tttgctgaga atacggttca atcattactt acctggggag
     1201 atcacgagct tgaggctgcg ggacgtctca ctcagccttt gaaatatgat gccgtcagcg
     1261 actgttacaa gccattaagc tggcaacaag ctttcgacga aattggcgca cgccttcaaa
     1321 gctatagtga tcccaatcag gttgaattct atacttcggg ccgcacttcc aatgaagctg
     1381 cctttcttta tcagcttttt gcccgtgaat acgggagcaa taactttccc gactgctcca
     1441 acatgtgcca tgaaccgacc agtgtgggtt tggcagcgag tatcggcgtg ggtaaaggga
     1501 ctgtgttgct ggaagacttt gagaagtgcg atttagtcat ttgcattggg cataaccctg
     1561 gtacaaacca cccccgcatg ctgacttcgt tgcgcgcttt agtgaaacgg ggagcgaaaa
     1621 tgatcgccat caatccttta caggaacgtg gcctggagcg atttaccgca ccgcaaaacc
     1681 cgtttgaaat gctgacgaac tctgagactc agttggccag tgcgtactac aacgtgcgca
     1741 ttggtggcga tatggcgttg ctcaagggga tgatgcgcct gttaattgag cgcgatgatg
     1801 ctgcaagtgc cgcaggtcgg ccctcattgc ttgatgacga atttattcaa acgcataccg
     1861 tcggctttga cgagctacgc cgtgacgttc tcaattccga gtggaaagat atcgaacata
     1921 tttctggact aagtcagaca caaatcgccg aactggctga cgcatatgcc gctgccgatc
     1981 gcaccattat ctgttacgga atggggatca ctcagcacga acatggtacc cagaatgtac
     2041 agcaactggt caatctgctg ttgatgaaag gtaacattgg caagcctggt gcgggtatct
     2101 gcccactacg aggtcactct aatgtacagg gcgaccgaac cgtcggtatc accgagaaac
     2161 cgtctgcaga gtttctggct cgcctgggtg agcgctatgg cttcacccca cctcatgcac
     2221 ctggacatgc tgcaattgcc agcatgcaag caatatgcac ggggcaggct cgagcattga
     2281 tctgcatggg gggcaacttt gcactggcaa tgccagatcg ggaagcgagc gctgtaccgt
     2341 taacgcaatt agatttggcg gtacacgtag ccactaagct taaccgctct catctgctga
     2401 ccgcacggca tagctatatt ctgccggttc tggggcgtag cgagattgac atgcaaaaaa
     2461 gcggtgcgca ggcggtaacc gttgaggatt caatgtcgat gattcatgcc tcgcgtggcg
     2521 tgttaaaacc cgccggtgta atgctgaaat cagagtgtgc agtggtcgcg ggaatcgcgc
     2581 aggcagcact accccagagc gtggtagcct gggagtatct ggtggaagat tatgatcgca
     2641 ttcgcaatga cattgaagct gtgttaccag agttcgccga ctataaccag cgcatccgac
     2701 atcctggagg ttttcacctg ataaatgcag ctgctgaaag gcgctggatg acgccgtcag
     2761 gtaaggctaa tttcattacc agcaaagggc tgttagaaga tccctcttca gcgtttaaca
     2821 gtaagctggt catggcgaca gtacgcagcc acgatcagta caacacgacg atttatggta
     2881 tggatgatcg ctatcgaggg gtattcggtc aacgagatgt ggtctttatg agtgctaaac
     2941 aagctaaaat ttgccgtgta aaaaacggcg aaagagttaa tcttattgcg cttacgccag
     3001 acggtaagcg cagctcacgc cgcatggata gattaaaagt ggtcatttac cctatggctg
     3061 accgctcact ggtgacctat tttccagaat cgaatcacat gctaactctt gataaccacg
     3121 atccattaag tggcattcct ggttataaaa gtattccggt tgaattagaa ccatcaaatt
     3181 aattcgcctc ctcatttctt ctgctgtcat ccgcacagca gaagaatttc tcattgacta
     3241 ttatcgcgca atttgctcac attgatcaaa ttaaaccaca cactataaga tataaacctc
     3301 tgcctacagc tgtaagaaac tccgctcagt actgaagtgc cagtcctatt tcctcttttc
     3361 tccagcctgt tatattaagc atactgatta acaattttta acgttatccg ctaaataaac
     3421 atatttgaaa tgcatgcgac cacagtgaaa aacaaaatca cgcaaagaga caactataaa
     3481 gaaatcatgt ctgtaattgt ggttgtctta ttactgaccc ttacgttgat agccattttt
     3541 tcggcaattg atcagctggg tatttcagaa atgggtcgca ttgcaagaga tcttacacat
     3601 ttcattatca atagtttgca agactgaaaa taaacagcaa attataaata tgaaatgtta
     3661 aaaaagtatc gataaaaact ttattgtttt aaggagataa aatgtcgctc gtttgttctg
     3721 ttatatttat tcatcatgcc ttcaacgcta acattttaga taaagattac gccttctctg
     3781 acggcgagat cctgatggta gataacactg ttcgtacgca ttttgaacct tatgagcggc
     3841 attttaaaga gatcggattt actgaaaata ccattaaaaa atatctacaa tgcactaaca
     3901 tccagacagt gacggtgcct gttcctgcga agtttttacg tgcttcaaat gtaccgactg
     3961 gattgcttaa tgaaatgatt gcttatctca actcggaaga acgcaatcat cataattttt
     4021 cagaactttt gcttttttct tgcctgtcta tttttgccgc atgcaaaggt ttcattacac
     4081 tattaactaa cggtgtgcta tccgtttccg gaaaagtgag aaatattgtc aacatgaagc
     4141 tggcgcaccc atggaagctg aaagatattt gtgactgcct gtacatcagt gaaagcctgt
     4201 tgaagaaaaa actaaagcaa gagcaaacga cattctcaca gattctatta gatgccagaa
     4261 tgcagcacgc aaaaaatttg atacgcgtag aaggttcagt caataaaatt gccgaacaat
     4321 gtggttatgc cagtacttct tattttattt atgcgttccg caaacatttc ggcaacagtc
     4381 cgaagagagt ttctaaggag taccgttgtc aaagtcacac gggtatgaat acgggcaaca
     4441 cgatgagtgc tttagctatt tgattatttg ctaacgagta gtcaaccacg cacgctacgt
     4501 aagaattata tggggcagcc attccctgcc ccgcgttgtt tttaggcgat atatttattg
     4561 aaataaataa gtgacatcca tcacatattt atgcacttgc ataacctgtt gcatgattat
     4621 ttatgttctc aattcagcat tttgtcagta aaatgcaata attcattaaa tatcaataaa
     4681 ttagttgttt atcggcgaga aattacttaa tagaacagaa agtaatgtca acgctttatg
     4741 gactgttatt tccctttttt tagctaaatc tgctatctct ttatgtgact aacttcactt
     4801 acatccactt atttctcttc gtaaaattac ttcggaatta agtacaataa gaagaggaac
     4861 atttatgaag tctgcattaa agaaaagtgt cgtaagtacc tcgatatctt tgatactggc
     4921 atctggtatg gctgcatttg ctgctcatgc ggcagatgat gtaaagctga aagcaaccaa
     4981 aacaaacgtt gctttctcag actttacgcc gactgaatac agtaccaaag gaaagccaaa
     5041 tattatcgta ctaaccatgg atgatcttgg ttatggacaa cttccttttg ataagggatc
     5101 ttttgaccca aaaacaatgg aaaatcgtga agttgtcgat acctacaaaa tagggataga
     5161 taaagccatt gaagctgcac aaaaatcaac gccgacgctc ctttcattaa tggatgaagg
     5221 cgtacgtttt actaacggct atgtggcaca cggtgtttcc ggcccctccc gtgccgcaat
     5281 aatgaccggt cgagctcccg cccgctttgg tgtctattcc aataccgatg ctcaggatgg
     5341 tattccgcta acagaaactt tcttgcctga attattccag aatcatggtt attacactgc
     5401 agcagtaggt aaatggcact tgtcaaaaat cagtaatgtg ccggtaccgg aagataaaca
     5461 aacgcgtgac tatcatgaca acttcaccac attttctgcg gaagaatggc aacctcaaaa
     5521 ccgtggcttt gattacttta tgggattcca cgctgcagga acggcatatt acaactcccc
     5581 ttcactgttc aaaaatcgtg aacgtgtccc cgcaaaaggt tatatcagcg atcagttaac
     5641 cgatgaggca attggcgttg ttgatcgtgc caaaacactt gaccagcctt ttatgcttta
     5701 cctggcttat aatgctccgc acctgccaaa tgataatcct gcaccggatc aatatcagaa
     5761 gcaatttaat accggtagtc aaacagcaga taactactac gcttccgttt attctgttga
     5821 tcagggtgta aaacgcattc tcgaacaact gaagaaaaac ggacagtatg ataatactat
     5881 tattctcttt acctccgata atggtgcggt tatcgatggt cctctgccgc tgaacggggc
     5941 gcaaaaaggc tataagagtc agacctatcc tggcggtact cacaccccaa tgtttatgtg
     6001 gtggaaagga aaacttcaac ccggtaatta tgacaagctg atttccgcaa tggatttcta
     6061 cccgacagct cttgatgcag ccgatatcag cattccaaaa gaccttaagc tggatggcgt
     6121 ttccttgctg ccctggttgc aagataagaa acaaggcgag ccacataaaa atctgacctg
     6181 gataacctct tattctcact ggtttgacga ggaaaatatt ccattctggg ataattacca
     6241 caaatttgtt cgccatcagt cagacgatta cccgcataac cccaacactg aggacttaag
     6301 ccaattctct tatacggtga gaaataacga ttattcgctt gtctatacag tagaaaacaa
     6361 tcagttaggt ctctacaatc tgacggatct acagcaaaaa gataaccttg ccgccgccaa
     6421 tccgcaggtc gttaaagaga tgcaaggcgt ggtaagagag tttatcgaca gcagccagcc
     6481 accgcttagc gaggtaaatc aggagaagtt taacaatatc aagaaagcac taagcgaagc
     6541 gaaataacta aaccttcatg cggcggaatt ttccgccgcc ttattgagcg agatagcgat
     6601 gcacgttaca gccaagccct ccagttttca atgtaatctc aaatgtgatt actgttttta
     6661 ccttgaaaaa gagtcgcagt ttactcatga aaaatggatg gatgacagca ctctgaaaga
     6721 gttcatcaaa caatatatcg cagcgtctgg caatcaggtc tattttacct ggcaaggcgg
     6781 tgaacccact ctggctggcc tggatttttt ccgtaaagtt attcactatc aacaacgcta
     6841 tgcaggccaa aaacgtattt ttaatgcatt acaaacgaat ggcattttat tgaataacga
     6901 atggtgttcc tttctcaaag aacatgaatt tctggttggt atctcgatcg atggccccca
     6961 ggagttacat gaccgttaca gacgcagtaa ttcaggtaac ggtacttttg caaaagtgat
     7021 agcagccatc gagcgtctga aatcatatca agttgagttt aatacgttaa ccgtcattaa
     7081 taacgttaat gtccattacc ctcttgaggt ttatcatttt ttaaaatcta tcggcagtaa
     7141 acatatgcaa tttatcgaat tgctcgaaac cgggacgccg aatattgatt tcagtggtca
     7201 tagtgagaac acattccgta tcattgattt ttctgtgcct cccacggctt atggcaagtt
     7261 tatgtcaacc atttttatgc aatgggttaa aaacgatgtg ggtgaaattt tcattcgtca
     7321 gtttgaaagc tttgtcagcc gttttttggg gaatgggcat acaagttgta ttttccagga
     7381 gtcctgcaag gataatctgg ttgttgaaag taatggagac atttacgaat gcgaccattt
     7441 tgtctatcca cagtacaaaa ttggaaacat taataaatct gaactcaaaa cgatgaacag
     7501 tgtacaactg acagcgcaaa aaaaacggat ttcagcgaaa tgtcagcaat gtgcatataa
     7561 acctatctgc aatggcggtt gtcctaagca tcgtattact aaagtaaaca atgagactgt
     7621 ttcttatttt tgcgaaggtt ataaaatcct tttttcaacc atggtacctt atatgaacgc
     7681 catggttgag ttagctaaga acagagtacc gctttaccac attatggatg ttgcaaaaca
     7741 aatggagaat aattaataac gctctctttt aactccattc ttagcctcct tcttatgacc
     7801 ttaacaaggc acccgacata aattcctgtc gggtgtttcg tcatcatcat cttcccttgc
     7861 gaaaatcctg gcttacgtgg tatgcgtcag ggcattagca atacccttga ttatcaatag
     7921 cataaccata accataacca taaccactga aaattaaaaa tttctatata tttcatattg
     7981 ttaaatgata cttaaataaa tttcatcagt aaatcattgc catagataat cattggatgg
     8041 cacaatcaat tttcgctaat gataaccatt cccattacgt tttgtatgtt gatagcaaag
     8101 tatctctgtc tgctgaagcc cttttggctg cgtaagaata ataaaacttc agtgttgtta
     8161 atcattatta tcctcgcaat gatccttggc gtggttaaaa ttcaggtctg gttaaacgac
     8221 tggaataatg attttttcaa tgcgctaagc cagaaagaaa ccgataagct ttggcagctt
     8281 gttctttggt tccctgccct gctggggatc tttgtattaa tatccgtaaa caaaacatgg
     8341 ttaattaaac tactgactat tcgctggcgc gaatggttaa cagattacta ccttaatcgc
     8401 tggtttgcag ataaaaacta ctacttcacg cagatctacg gcgagcataa aaatacagat
     8461 aaccctgacc aacgtatcgc tgaagacatt ctcttactga tcagcaaaac gctcagtctt
     8521 tcatttggct tcatccagtc acttagcatg ctgatcacct ttaccgttat tctttggcaa
     8581 agcgcgggta cgctctcatt cactgttggt ggaacagaat ggaatatcca ggggtatatg
     8641 gtctataccg tcgtgctcat tgtgatcggt ggaactttat ttacccataa ggttggtaag
     8701 cgtattcgtc cgcttaatgt ggaaaaacaa cgtagcgaag cgacatttcg aactaatctt
     8761 gtgcagcata ataagcaggc agaactgatt gcgctaagca atgctgagtc tctacaacgc
     8821 caggagttgc gcgacaattt tcataccatt aaagagaact ggcatcgttt aatgaatcgt
     8881 cagcggttgc ttgattactg gcaaaatatt tattcgcgct cgcttagcgt tcttccctac
     8941 tttctgttat tgccgcagtt tattagcggg aagatcaatc tgggcggact gatgaaatcg
     9001 cgccaggcat ttatgctagt atcgaacaat ttaagctggt ttatttataa atatgacgaa
     9061 cttgctgaac tggctgcggt tatcgatcgc ttgtatgagt tccatcaact cactgaacag
     9121 cgccctacga ataagcctaa aaattgccaa catgcggtac aagtggctaa tgcgagtatt
     9181 cgtacgcctg ataataagat catattagag aacttgaact ttcatgtttc gccaggcaaa
     9241 tggctattac tgaaaggcta ctctggtgcg ggaaaaacca cactgcttaa aacattatcc
     9301 cactgctggc cgtggtttaa aggtgatatt ttttctcctg ctgacagttg gtatgtgtca
     9361 caaacaccgt taatcaaaac cggcttactg aaagagatta tttgtaaagc acttcccctg
     9421 cccgtagacg ataaatcgtt gagcgaagta ctgcatcagg ttggtcttgg gaaattggct
     9481 gcgcgtattc atgaccacga tcgctgggga gatattcttt ccagcggcga aaaacaacgt
     9541 atcgccctgg cacgattaat tttacgacgt ccgaaatgga tatttcttga cgaaactacc
     9601 tctcatcttg aggaacaaga ggctatccgc ttactgcgtt tagtgcgtga aaaactaccc
     9661 acaagcggcg tcattatggt tacacatcaa cccggtgtct ggaacctggc cgatgatatt
     9721 tgtgacatta gcgcggtttt ataaaaacaa taaaagccct gctgtacgga gatataaata
     9781 aatgaagcga gttcttattc ctggcgtcat tttatgtggc gctgatgtgg cgcaggccgt
     9841 cgatgacaaa aacatgtaca tgcatttttt tgaagagatg acggtctatg ctcctgtccc
     9901 tgtacccgta aacggcaaca cgcattacac cagtgaaagc atcgagcgtt taccgaccgg
     9961 gaatggcaat atcagcgatc tgctgagaac caaccctgcg gtacgcatgg attcaacgca
    10021 aagtacctcg ttgaaccagg gagatattcg ccctgagaaa atctctattc acggtgcgtc
    10081 gccctaccag aatgcctatt tgattgacgg tattagtgca actaataacc tgaacccagc
    10141 gaatgagtcc gatgccagta gtgcaaccaa tattagcggg atgtcacagg ggtattatct
    10201 tgatgtcagc ttactggaca atgtgacgct ttatgacagt tttgtgccgg ttgaatttgg
    10261 tcgcttcaat ggcggggtaa ttgatgcaaa gatcaaacgc ttcaacgctg atgatagcaa
    10321 ggtgaaattg ggttatcgca ctacgcgttc ggactggtta acatcgcata tcgatgagaa
    10381 taacaagagc gcatttaatc aaggttcttc aggaagtact tatttctctc cagattttaa
    10441 aaagaacttt tataccttgt cgtttaatca ggagctggct gataactttg gcgttaccgc
    10501 cggtttatcg cgccgccagt ctgatatcac ccgcgcggat tatgtttcga atgacggcat
    10561 tgtcgtcggt cgggcacagt ataaaaacgt tatcgatact gcattgagca aatttacctg
    10621 gtttgccagc gaccgcttta cccacgattt aaccttaaaa tataccggct ccagccgtga
    10681 ttataatacc agcaccttcc cgcagtctga tcgcgaaatg ggtaataaat cctatggtct
    10741 tgcatgggat atggatacgc aactcgcatg ggccaaacta cgtaccaccg ttggttggga
    10801 tcatattagt gattataccc gtcacgatca tgacatctgg tacaccgaac tttcatgtac
    10861 atatggtgat attacagggc gttgtacccg tggcggatta ggacacattt cccaggctgt
    10921 agataattac accttcaaaa cacgcctgga ctggcaaaaa ttcgccgtgg gtgatgtttc
    10981 gcatcaaccc tactccggcg cggaatacat ctattccgat gcatggactg aacgccataa
    11041 ccagtctgaa tcctatgtga ttaatgctgc aggaaagaaa actaaccata ccatttacca
    11101 taaaggtaaa ggcagcctag gaattgacaa ctacacgctg tatatggcgg atcacattag
    11161 ctggcggaat gtgtcgttaa tgcccggtgt gcgttatgac tatgacaact atctgtcaaa
    11221 ccacaatatc tccccgcgct ttatgacgga atgggatatt tttgctgatc aaacctcaat
    11281 gattaccgcc ggttataacc gttactatgg cgggaatatt cttgatatgg gattacgtga
    11341 tatccgcaat agctggacgg aatcggtatc aggtaataaa accctgacgc gttatcagaa
    11401 tttgaaaacg ccttataacg atgaactggc aatgggattg cagcaaaaaa tcggtaagaa
    11461 cgttattgca cgcgcaaact atgtttaccg tgaagcgcat gatcaaatca gcaaaagcag
    11521 tcgtaccgac agcgcgacta aaaccaccat tactgaatat aacaacgatg gcaaaaccaa
    11581 aacgcattcg tttaacctca gttttgaact ggccgaaccc ctgcatatcc gccaggtaga
    11641 tattaacccg caaattgtct ttagctatat caagagcaag ggcaacttgt cgttaaacaa
    11701 tggttatgag gagagcaata ccggtgataa ccaggtggtt tataacggta atctggtctc
    11761 ttacgatagc gttccagtgg cagattttaa taacccatta aagatctcct taaacatgga
    11821 tttcacgcat caaccgagcg ggttagtgtg ggcgaatacg ctggcgtggc aagaagcgcg
    11881 taaagctcgc attatccttg gtaagacaaa tgcgcaatac atcagcgaat attcagatta
    11941 caagcagtat gttgacgaaa aactggatag cagcctgacc tgggacaccc gcttgtcctg
    12001 gacgccacaa tttctgaaac aacaaaacct gacgatcagt gccgatattc tcaatgtact
    12061 ggatagcaaa accgctgttg atacaacgaa taccggtgtg gcgacctacg ccagtggccg
    12121 tactttctgg cttgatgtca gcatgaaatt ttaatagttc ggattttact taaccgggta
    12181 aattcgcccg gttttcgcat ggagataatt atgagaaacc tctgtttctt actgacgtta
    12241 gtggcaactc tgttgctccc cgggcggctg attgccgccg ccttaccgca ggatgaaaag
    12301 ttaattaccg ggcaactgga caatggcttg cgatatatga tttatccgca tgctcaacca
    12361 aaggatcagg taaatttatg gctgcaaatt cataccggtt cattgcagga agaagacaat
    12421 gagcgcggcg tggctcattt tgtagaacat atgatgttta acggcacaaa aacatggccg
    12481 ggtaataaag tcatcgaaac atttgagtca atgggcctgc gttttggtcg cgatgttaat
    12541 gcctatacca gctatgacga aacggtgtat caggtgagtt tgccgactac gcagaaacaa
    12601 aatctgcaac aagtgatggc aatcttcagt gaatggagta atgccgcaac ctttgaaaaa
    12661 ctcgaagtag acgctgaacg tggcgtaatt actgaggaat ggcgtgccca tcaggatgcg
    12721 aaatggcgca cctctcaggc gcgccgccct ttcctgctgg ctaatacccg taatttagac
    12781 cgtgaaccta tcggcctgat ggatactgtc gccacggtca caccggcaca attgcgccaa
    12841 ttttatcaac gctggtatca accaaataat atgaccttta tcgtggtcgg cgatatcgac
    12901 agtaaaaaag cgctggcgct gataaaggat aatttaagta agcttccggc taacaaagca
    12961 gctgaaaatc gcgtctggcc gacaaaagcc gaaaaccacc tgcgctttaa tatcattaat
    13021 gataaagaaa accgggtgaa cggcatcgca ctctattatc gcctgccaat ggtacaagtg
    13081 aacgatgagc aaagctttat cgaacaagct gaatggagca tgttagttca gctgttcaat
    13141 caacgtctgc aggaacgcat acagtcgggc gagttgaaga ctatttctgg cggcactgcg
    13201 cgcagcgtta aaattgcacc cgattatcag tcgctgtttt tccgtgtaaa tgcacgagac
    13261 gataatatgc aggatgctgc gaatgcatta atggcagagt tggcaaccat tgatcagcat
    13321 ggtttttctg ctgaagaact cgatgatgtc aaatctaccc gcctcacctg gctgaaaaat
    13381 gcggttgatc agcaagctga acgtgattta cgtatgctga ccagtcgcct ggcatccagc
    13441 tcattaaata atacgccgtt cttgtcgccg gaagagacat atcaactttc gaaacgtctg
    13501 tggcagcaaa ttaccgtgca aagtctggcg gaaaaatggc agcagttaag aaagaaccag
    13561 gacgcatttt gggagcaaat ggtaaacaat gagcttgccg ccaaaaaagc attgtctcct
    13621 gcggctatcc tggcgctgga aaaagagtac gccaacaaaa agctggcggc ttacatcttc
    13681 ccaggcagaa atttatcgtt aacagtagac gctgacccac aggcggaaat tagcagcaaa
    13741 gaaacgctgg ctgagaatct gacatcatta acactttcca atggtgccag ggttattctg
    13801 gcaaaatccg cgggtgaaga gcaaaagcta caaattactg ccgtatcgaa taaaggcgat
    13861 ttaagtttcc ctgcgcagca aaaatcactt atcgcgctgg caaataaagc ggtaagcgga
    13921 agcggcgttg gtgagctctc ctcttccagc ctgaaacgct ggagtgcgga aaattcggta
    13981 accatgagca gtaaagtcag tggcatgaat acgttgctct ccgttagcgc gcggactaat
    14041 aaccctgaac ctggttttca gttgattaac cagcgaatca cccacagcac gattaacgac
    14101 aatatttggg catcgctaca aaatgctcaa attcaggcgt tgaaaacgct cgaccagcgt
    14161 ccagcggaga aattcgccca gcagatgtat gagacgcgct atgctgatga ccgcacgaaa
    14221 ttactgcaag aaaatcagat tgtacagttt actgccgcag atgcgctggc tgccgatcgc
    14281 cagttgtttt catctccagc ggatatcacg tttgtcattg tcggtaatgt ctcagaagac
    14341 aaactcgtgg cgttaattac gcgttactta ggatcaatca aacactctga ttcgccatta
    14401 gccgcaggta aaccattaac tcgcgcgacg gacaacgcat cggttactgt aaaagaacaa
    14461 aatgaacctg tggcacaggt ttcacagtgg aagcgttatg attcccggac acctgttaat
    14521 ctggcgacgc gtatggcgct cgatgctttt aacgtcgcac tggcaaaaga tctacgtgtt
    14581 aatattcgtg aacaggcatc tggagcatac agcgtttctt ctcgcctctc ggttgatcct
    14641 caggccaaag atatcagtca tttgctggct tttacttgtc aaccagaacg acatgatgaa
    14701 ctgttaacgt tagcgaatga agtgatggtt aagcgtctgg ctaaagggat cagtgagcaa
    14761 gaactgaatg aataccagca aaacgttcag cgcagcctcg atatccaaca gcgtagcgtt
    14821 caacaattag cgaacactat tgtaaatagt cttattcaat atgacgatcc tgcagcatgg
    14881 actgagcagg agcaattgtt gaaacaaatg acggtagaga atgttaacac tgccgttaaa
    14941 caatatcttt ctcatccggt aaatacttat accggagtat tattgccaaa ataataacag
    15001 ccccgtcaac acatcgttgg cggggatttt agcaatattc gctattttta tgtaataatt
    15061 ttataaatgc gttcaaaata ataatcaagt actaatagtg atattttaag gtctgatttt
    15121 tacgtgataa ttcaggagac acagaatgcg cataaaaata acagcataaa acaccttacc
    15181 accacccaag aatttcatat tgtattgttt ttcaatgaaa aaacattatt cgcgtaatat
    15241 ctcacgataa ataacattag gattttgtta tttaaacacg agtcctttgc acttgcttac
    15301 tttatcgata aatcctactt ttttaatgcg atccaatcat tttaaggagt ttaaaatgga
    15361 taagaagcaa gtaacggatt taaggtcgga actactcgat tcacgttttg gtgcgaagtc
    15421 tatttccact atcgcagaat caaaacgttt tccgctgcac gaaatgcgcg acgatgtcgc
    15481 attccagatt atcaatgacg aattatatct tgatggcaac gctcgtcaga acctggccac
    15541 tttctgccag acctgggacg acgaaaatgt ccacaaattg atggatttat ccattaa
//
LOCUS       DAJVUY010000098        15303 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.098, whole genome shotgun sequence.
ACCESSION   DAJVUY010000098 DAJVUY010000000
VERSION     DAJVUY010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15303
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.098"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(11..454)
                     /locus_tag="OQQ72_002706"
     CDS             complement(11..454)
                     /locus_tag="OQQ72_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS2012375.1"
                     /translation="MAELQKVDDWLSALLANLEPAARSRMMRQLAQELRRTQQQNIRM
                     QRNPDGSSYEPRRVTARSKKGCIKRQMFTKLRTTKYLKTAASADSASVQFEGRVQRIA
                     RIHHYGLSDRVSRKGIYTIYAKRQLLGFNVQSIELIERMFIKNLT"
     gene            complement(447..878)
                     /locus_tag="OQQ72_002707"
     CDS             complement(447..878)
                     /locus_tag="OQQ72_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012376.1"
                     /translation="MNKPQSLRHALNKAVPYVRNNPDKLHLFVDNGSLVASGASSMSW
                     EYRYTLNVVIEDFSGDQNLLMAPVLLWLRDNQPDAINNPALREKLFTFEVDILRNDVC
                     DISLNLQLTERVLVSTDGSVSNVEAVAEPDEPEEMWTVKRG"
     gene            complement(974..1402)
                     /locus_tag="OQQ72_002708"
     CDS             complement(974..1402)
                     /locus_tag="OQQ72_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS2012377.1"
                     /translation="MNRLLLVVLALLLAALGWQTWRLADASQTISTQADELQSKSQAL
                     AKSNSQLISLSILTETNNREQARLYAEAEQTSVLLRQRQRRIEELKRENEDLRRWADT
                     PLPADIIRLRERPALTGGAAYRQWLSASDAVSAGAGSAAH"
     gene            complement(1399..1776)
                     /locus_tag="OQQ72_002709"
     CDS             complement(1399..1776)
                     /locus_tag="OQQ72_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000730949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012378.1"
                     /translation="MKKKLISGLFLMLWMALLIAAMVYPQGIFPVLAASGVWVACLLT
                     WAVIPVALASLIKNGPLWQELRASLLKTITRKENVFISWVIRLLIVVSLAWTGWAITL
                     VFYLLTVIAFWITHNQMAQQVAA"
     gene            complement(1778..2290)
                     /locus_tag="OQQ72_002710"
     CDS             complement(1778..2290)
                     /locus_tag="OQQ72_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001069913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS2012379.1"
                     /translation="MNPSIVKRCLVGAVLAIAATLPGFQQLHTSVEGLKLIADYEGCR
                     LQPYQCSAGVWTDGIGNTSGVIPGKTITERQAAEGLISNVLRVERALEKCVKQQPPQK
                     VYDAAVSFAFNVGTGNACSSTLVKLLNQRRWADACRQLPRWVYVKGVFNQGLDNRRAR
                     EMAWCLQGAN"
     gene            complement(2271..2486)
                     /locus_tag="OQQ72_002711"
     CDS             complement(2271..2486)
                     /locus_tag="OQQ72_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012380.1"
                     /translation="MTLERISAFITYCIAVVLAWLGDLSIKDASTLGGLMIGVLMLAI
                     NWYYKHKAYQLLRDGQISREDYESINR"
     gene            complement(2490..2693)
                     /locus_tag="OQQ72_002712"
     CDS             complement(2490..2693)
                     /locus_tag="OQQ72_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS2012381.1"
                     /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLKANPGLAEYGPFLP
                     HGLQVELPDIPTTTTVQTVQLWD"
     gene            complement(2693..3157)
                     /locus_tag="OQQ72_002713"
     CDS             complement(2693..3157)
                     /locus_tag="OQQ72_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS2012382.1"
                     /translation="MKFVAPEQAPEQAEIIRNTPFWPDVDLSEFRSVMRTDGTVTQPR
                     LKQVALSAISEVNAELYEFRRRQQMLGYASLAEVPAEQLDGKSERIQHYFNAVYCWAR
                     AMLNERFQDYDATASGAKRGEELAEASGDLWRDARWAISRVQDAPHCTVELI"
     gene            complement(3253..3903)
                     /locus_tag="OQQ72_002714"
     CDS             complement(3253..3903)
                     /locus_tag="OQQ72_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS2012383.1"
                     /translation="MSLSPARQHRLRVQAEQAVREGGSVRHASGYDLMLLQLAEDRRR
                     LKGVQSTVKKAEIKVELLPKYAAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGALE
                     IGRHALRHGWVMPLGNRNVQTVLTEEMADAAQSAMLAATGFDADLLLQTLELTDGLDM
                     PDQSRARLHKAIGAVLSESNPASALNHLNHALQLDPRCGVKKDKQQLERRLRNDSR"
     gene            complement(3907..4965)
                     /locus_tag="OQQ72_002715"
     CDS             complement(3907..4965)
                     /locus_tag="OQQ72_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS2012384.1"
                     /translation="MKKNTRFAFNAYLQQLARLNGVAVEELSSKFTVEPSVQQTLEDQ
                     IQQSAAFLTLINVTPVTEQSGQLLGLGVGSTIAGTTDTTAKEREPVDPTLMVDVEYKC
                     EQTNFDTVLTYAKLDLWAKFQDFQVRIRDAIVKRQALDRIMIGFNGVKRAKTSNRSEN
                     PLLQDVNKGWLQKIREDAPDHVMGSTTTGGETTPGAVKVGKGGEYANLDAVVMDAVNE
                     LIDVVYQDDDDLVVICGRELLSDKYFPLVNKEQENSEKLAADMIISQKRMGGLQAVRA
                     PFFPPNALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAAL
                     VENIQISDFSAAAAETGA"
     gene            complement(4982..5815)
                     /locus_tag="OQQ72_002716"
     CDS             complement(4982..5815)
                     /locus_tag="OQQ72_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS2012385.1"
                     /translation="MTVKAKRFRIGVEGATTDGREIQREWLEQMAASYNPAVYTALIN
                     LEHIKSYLPDSTFNRYGKVTALFAEEITEGPLAGKMALYADVEPTESLVELVKKGQKL
                     FTFMEVSPKFADTGKAYLVGLAATDDPASLGTEMLTFSASAAHNPLANRKQNPANLFT
                     AAEETVIELEEVQDDKPSLFARVTALFTKKEQSDDARFSDVHKAVELVATEQQNLSAR
                     TEKSLSEQEERLSELETALQAQQTAFNELVDKLSHEDSRQDYRQRATGGNAPADTLTN
                     C"
     gene            5958..7724
                     /locus_tag="OQQ72_002717"
     CDS             5958..7724
                     /locus_tag="OQQ72_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS2012386.1"
                     /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK
                     KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG
                     GNEADLNPNVANRNKGPRRQPEKNVFTDDQIEKLEKIFHSSMFNYQRHWWEAGKTNRI
                     RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVEVEL
                     KGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR
                     QTYFSTPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHSNLAPGRLCADGQYRQIVT
                     VEDAVRGACNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVW
                     TDFHALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGM
                     DFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL
                     KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM
                     HALFNEPLQGESANTSNIVEIF"
     gene            7724..8320
                     /locus_tag="OQQ72_002718"
     CDS             7724..8320
                     /locus_tag="OQQ72_002718"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012387.1"
                     /translation="MGKSKKNRAAATKQTQHKNQTSAEAFSFGDPVPVLDRRELLDYV
                     ECVQTDRWYEPPVSFDGLARTFRAAVHHSSPIAVKCNILISTYIPHPLLSQQAFSRFV
                     QDYLVFGNAYLEKRTNRFGEVIALEPALAKYTRRGLDLDTYWFVQYGMTTQPYQFTKG
                     SIFHLMEPDINQEIYGLPGYLSAIPSALLNESATLFRR"
     gene            8354..8755
                     /locus_tag="OQQ72_002719"
     CDS             8354..8755
                     /locus_tag="OQQ72_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS2012388.1"
                     /translation="MYMTDAAQNQEDVNNLRNAMKSAKGPGNFRNLFMYSPNGKKDGL
                     QIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIMPNNVGGFGDVEKASLEFVR
                     NELIPLQKRMMEINKLVSENIVKFDSYKLAT"
     gene            complement(8862..9743)
                     /locus_tag="OQQ72_002720"
     CDS             complement(8862..9743)
                     /locus_tag="OQQ72_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004982020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012389.1"
                     /translation="MKWAIEMNKLKRPVFKDYSAFKKLSANKRLKHHSVLNGQDTFIL
                     NAYRSYIKNKGYLNVNSCGVLSNNIAEALRYYYNNPAKCLSIIDDIRAANSNSLCPMC
                     GSMHSGTLDHVLPKENYPEFSLFTKNLVPACKCNTFKSTTIANSAGHRMLHPYFDNIL
                     KQRLICANFSKLGRTPTIDVKIIIDPMSPEYNNVKYHLDNVVIKNNIKGYLSEQWESF
                     YLYPELVIRGLNKSLSTYSDVYELLTRELLLLDEKHKGKNNWNSVFVAGLIRPDVIRW
                     ILCELHLGNRSPDGRLI"
     gene            complement(9727..11376)
                     /locus_tag="OQQ72_002721"
     CDS             complement(9727..11376)
                     /locus_tag="OQQ72_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000960487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS2012390.1"
                     /translation="MLVKKNKNYSLYFLITNNQQISDSGNYIKIVPSRSDWNDFGYLS
                     RVEISIFNKKECKDIISLNGYIGFLNSEEERNGKAELIRRVKKKEESNLKDEGFNDYF
                     VMLQDMNNYRRLVRFFGVNESKYILNFINDVVSKKSDASAENLRKKAISSDIFNKSFI
                     RESESYFTFKNAGTVLSGIQYEELGNLSQHIKISYSNKVNEEDVSYVFNFDHEHDLPK
                     RISIIIGENGVGKSQTLREIALAAIKGKDNLVAVVDSNGVSIEERIQISRLIAFSPTN
                     ESKCSFPTDKRIKSLIWYKRLTLNRESKSKLNLNDLIVQLARSNDAIGYNQRWNIFVD
                     ALSVLNSNNDLVIKCGGENSPFVKLNELNSRGEESRLSLYSEIILSGEPLRLIENKCY
                     PLSSGEISFIKFCVQVCLYIENGTLLLIDEPETHLHPSFINKFMALLDNLLEKTGSSA
                     IIATHSVYLVREVFKEQVTILRRRDDGVIVSEKPRLSTFGANIGNISYFVFGESEPTQ
                     ILNKVKNNIIAKNMSWDDVESKYSEDLSLNVLTALRNEMGN"
     gene            complement(11669..11902)
                     /locus_tag="OQQ72_002722"
     CDS             complement(11669..11902)
                     /locus_tag="OQQ72_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HCS2012391.1"
                     /translation="MRIEIMIDKEQKISQSTLDALESELYRNLRPLYPKTVIRIRKGS
                     SNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH"
     gene            complement(11913..12101)
                     /locus_tag="OQQ72_002723"
     CDS             complement(11913..12101)
                     /locus_tag="OQQ72_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012392.1"
                     /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE
                     LMAKIRTHEYNRSMDVIS"
     gene            complement(12255..14669)
                     /locus_tag="OQQ72_002724"
     CDS             complement(12255..14669)
                     /locus_tag="OQQ72_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HCS2012393.1"
                     /translation="MSHADMNNCCGFNEAAAAFSWNSPKKAINPYLDPAEVAPVSALS
                     NLITLYAADNEQEQLRREALSDQVWERYFFYESRDPVQHEMEQDKLISRAKLAHEQQR
                     FNPDMVILADVNAQPSHISKPLMQRIEYFSSLGRPKAYSRYLRETIKPCLERLEHVRD
                     SQLSASFRFMASHVGLDGLLILPEMSQDQVKRLSTLVAAHMSMCLDAACGDLYATDDV
                     KPEEIRKTWEKVAAETLRLDVIPPAFEQLRRKRNRRKPVPYELIPGSLARMLCADWWY
                     RKLWKMRCEWREEQLRAVCLVSKKASPYVSYEAVMHKREQRRKSLEFFRSHELVNEEG
                     DTLDMEDVVNASSSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFHSTLNN
                     GRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAGLRWYGVRVAEPHHDGTVHWHLLCF
                     MRKKDRRAITALLRKFAIREDREELGNNTGPRFKSELINPRKGTPTSYIAKYISKNID
                     GRGLAGEISKETGKSLRDNAEYVNPWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR
                     QQGDKKAGAPVLDNPRLDAILAAADAGCFATYIMRQGGVLVPRKYHLIRTAYEINEEP
                     TAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQEAAADQGACAPWTRGNNCL
                     LAENLNQQEKDKSADGNPRTDITSMDDKELHDYLHSMSKKERRELAARLRLVKPKRRK
                     DYKQRITDHQRLQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQRLQEDD
                     QWRNLY"
     gene            complement(14666..>15303)
                     /locus_tag="OQQ72_002725"
     CDS             complement(14666..>15303)
                     /locus_tag="OQQ72_002725"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HCS2012394.1"
                     /translation="RVLFEIANREVAYYNIRQEFNYSTEITDFMKAVYFLYLNRHGYR
                     GLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFAEKAQRATFICASFDETLAMLKAGDVV
                     YCDPPYDGTFSGYHTDGFTEDDQYHLASVLEHRSSEGHPVIVSNSDTSLIRSLYRNFT
                     HHYIKVKRSIGVAAGEGKSATEIIAVSGPRCWVGFDYSRGVDSSAVYGVRA"
BASE COUNT         3734 a         4138 c         3524 g         3907 t
ORIGIN      
        1 caaataaaaa tcaagttagg tttttaatga acattctttc aattaactca atagattgga
       61 cattaaaacc taataactgc cttttcgcat agatggtata aatacctttt cgactgacgc
      121 gatcactcaa gccgtaatgg tgaatacggg caatgcgctg caccctacct tcaaactgta
      181 cgctggcaga atcggcgctg gctgcagttt tcaggtattt tgtggtgcgc agctttgtaa
      241 acatctgacg tttgatgcac ccctttttgc tgcgtgctgt taccctgcgc ggctcataac
      301 tgctgccatc aggattgcgc tgcatcctga tgttctgctg ctgtgtccgg cgcagttcct
      361 gcgccagctg gcgcatcatg cggcttcttg cggctggctc cagattcgcc aataatgcac
      421 tcagccagtc gtccaccttc tgcaattcag ccacgtttca ccgtccacat ttcttcaggt
      481 tcatcaggtt ccgctaccgc ttcaacgttc gacacactgc cgtcagtgct gaccagcaca
      541 cgctccgtca gttgcaggtt aaggctgata tcacagacat cgttgcgcag aatatccacc
      601 tcaaaggtga atagcttttc ccgtaacgcc gggttattga tcgcatcggg ctggttatcc
      661 cgcagccaca gcaaaaccgg ggccatcagc agattctggt cgccgctgaa atcttcaatc
      721 accacgttca gggtgtagcg gtactcccat gacatggagc tagccccgga ggcaaccagc
      781 gaaccgttat ccacaaacag atgcagtttg tccgggttat tacggacata aggcactgct
      841 ttattgaggg cgtggcgcag ggattgtggt ttgttcactg tttcgctcct gacacgcaat
      901 aatcatgtcc actttgtctg cacagaccgc ccaggcggcc tccgtttcat ccagcaacgc
      961 attcagatca ccgttagtgc gcggcgctgc ctgctccagc cgacacggcg tcactcgcgg
     1021 acaaccactg acggtaagct gcacctccgg tgagtgccgg acgttcccgc agccggataa
     1081 tgtcagcagg caaaggagta tcagcccagc gacgtaaatc ctcgttctca cgtttcagtt
     1141 cctcaatccg gcgttgtcgt tgtctcagca gtacactggt ctgttctgct tcggcataga
     1201 gccgcgcctg ctcccggtta ttggtttcag tcagaatgga caggctgata agctggctgt
     1261 tgctctttgc cagtgcctgg cttttgctct gcagctcgtc tgcctgcgtg ctgatggtct
     1321 ggctggcatc agccagccgc cacgtctgcc agcccagcgc cgccaataat aacgccagca
     1381 caaccagcag caaccggttc atgcggctac ctgttgcgcc atctgattat gggtgatcca
     1441 gaaggcaata acggtcagca gataaaagac cagggtaatg gcccaccccg tccaggcgag
     1501 actgacgaca atcagcaatc gtatcaccca gctgataaat acgttttctt ttcgggtaat
     1561 tgtcttcagt aaagatgccc tcaactcctg ccagagcggg ccattcttaa ttaacgaagc
     1621 cagtgctacc ggaattaccg cccatgtcag taaacaggct acccaaacgc cggacgctgc
     1681 cagtaccgga aaaatcccct gcggatacac cattgctgcg attaacagcg ccatccataa
     1741 catcagaaac agcccgctga ttaatttctt tttcatttca gtttgctccc tgtaaacacc
     1801 aggccatctc ccgcgcacgg cggttatcca gcccctgatt aaaaacacct ttcacataaa
     1861 cccagcgcgg caactgtcgg cacgcatccg cccagcgccg ctgattgagc aatttcacca
     1921 gcgtggaact gcaggcattg cccgtaccca cgttgaaggc aaacgacacc gcagcgtcat
     1981 acaccttctg cggcggctgt tgcttcacac acttttccag cgcccgctcc acacgcagca
     2041 cgttggagat cagcccttct gctgcctgtc gctccgtaat ggttttgccg ggaatgacgc
     2101 ccgacgtatt accaataccg tcggtccaga cacccgcgct gcactgatac ggctgcagac
     2161 gacaaccttc gtaatcggca atcagtttca gtccctccac ggaggtgtga agctgctgaa
     2221 aacccggcag cgtggcagca atagccagca cggccccgac aaggcagcgt ttaacgattg
     2281 atggattcat agtcctcccg cgagatctgc ccgtcgcgca gaagctggta ggctttgtgt
     2341 ttgtagtacc agttgatagc cagcatcagc acaccaatca tcaggccgcc cagcgttgag
     2401 gcatccttga tggacaaatc gcccagccag gccagcacga cggcgatgca atacgtgata
     2461 aaggcgctga ttcgctcaag cgtcataatt cagtcccata gctggacggt ctgcacggtg
     2521 gtggtggtcg gaatgtccgg cagctccacc tgcagcccgt gaggtaaaaa ggggccgtat
     2581 tcggcaagcc ccggatttgc cttcagtacc tgctccgtga caccctgcgt gcgcccgtaa
     2641 tgacgccagc aaagcgcgtc caccgtgtca tactgatgcg cacgcacttt catcagataa
     2701 gctccactgt gcagtgcggc gcgtcctgca cccggctgat ggcccagcgg gcgtcacgcc
     2761 acaaatcacc gcttgcttcc gccagttctt cgccccgctt cgcaccggat gccgtggcgt
     2821 catagtcctg gaaacgttcg ttgagcatgg cgcgagccca gcagtaaacc gcgttgaaat
     2881 agtgctgaat gcgctcactt ttcccgtcca gctgttccgc cggaacctca gccagcgacg
     2941 cataccccag catctgctgg cgtctgcgaa actcatacag ctctgcgtta acctccgaaa
     3001 ttgccgacag tgcaacctgc tttaaacgcg gctgcgtcac cgtgccgtca gtgcgcatga
     3061 cactgcgaaa ctccgacagg tccacatcag gccagaacgg cgtatttcta atgatttccg
     3121 cctgttccgg tgcctgttct ggcgcaacaa acttcatgct gctttctcct gaaataaagg
     3181 gcggtggacg gggttttgat gtggctgtgc ctttcgccac cccgtgccgc ccgtgcgcgg
     3241 gggcacgttc tgtcagcggc tgtcattgcg cagtctgcgc tccagctgct gtttgtcttt
     3301 tttcacgcca cagcggggat cgagctgtaa cgcatggttg agatgattaa gggcggaagc
     3361 cggattgctt tcactcagga ccgcgccaat cgctttatgc agacgtgccc gtgactggtc
     3421 cggcatatcc agaccgtctg tcagctccag cgtctgcagc aacagatcgg catcaaagcc
     3481 ggtggcggca agcattgcgc tctgcgctgc atctgccatt tcctctgtca gcacggtctg
     3541 cacgttgcgg ttgcccagcg gcatcaccca tccatgacgc agggcatgac gcccgatctc
     3601 cagcgccccg gcataatctc cggcatcaat gcgccacaac atcacgtaca tcagcacgtc
     3661 atcctgttga gcgcctccgg cagccaggac accctccgcc caggcggcgt acttcggcag
     3721 cagctccact ttgatttccg cttttttgac cgtggactga acgcccttga gacggcggcg
     3781 gtcttccgcc agttgcagca gcatcaggtc atagcccgat gcgtggcgaa cactgccacc
     3841 ctcacggacg gcctgttcag cctgaacgcg caggcgatgc tgccgtgcgg gactcaggct
     3901 catggattac gctccggttt cggctgcggc ggcgctgaaa tcactaatct ggatgttttc
     3961 caccagtgcg gcgcagcggt agtcctcaac cacataggct tcgttaacgg attcaaagtt
     4021 ttcaatccgg tcacgtttcg ggttgtcgat aactgaacgg cggcgggtgt cttcctgcca
     4081 gtagatggac aggttatcca gacgggtgat cagcagcgca ttcggcggga agaacggcgc
     4141 acgcacggcc tgcaggccac ccatgcgttt ctgactgatg atcatatcgg cagccagttt
     4201 ttcactgttt tcctgctctt tgttgaccag cgggaaatac ttgtcagaca gcagttcacg
     4261 accgcaaatc accaccagat cgtcatcgtc ctggtagacc acgtcgataa gctcattgac
     4321 ggcatccatc accacggcgt ccaggttggc atattcgcca cctttcccga ctttcactgc
     4381 gcccggtgtg gtttcaccgc ccgtggtggt gctgcccatg acgtgatccg gtgcatcctc
     4441 acggattttc tgcagccagc ctttattcac atcctgcagc agcgggtttt cgctacggtt
     4501 ggaggttttc gcacgcttca cgccattaaa gccgatcatg atgcggtcca gtgcctgacg
     4561 tttcacgatg gcgtcacgga tacgcacctg aaaatcctga aacttcgccc acaggtccag
     4621 cttcgcgtag gtcagcaccg tgtcaaagtt ggtctgctcg catttatatt ccacatcgac
     4681 catcagcgtc ggatcgacag gttcacgctc tttcgcagtg gtatcagtgg ttccggcaat
     4741 ggtgctgcca actcccaacc ccagcagctg accggactgc tcagtcactg gcgtgacgtt
     4801 aatcagagtc aggaaagcgg cggactgctg gatctggtct tccagcgtct gctgcacgga
     4861 cggctctacg gtgaacttgc tggacagttc ttcaactgcc acaccgttca gacgcgccag
     4921 ttgctgcagg taagcgttaa aagcaaagcg ggtattcttc ttcatcaggt tttgtgctcc
     4981 atcagcaatt ggtcagagtg tcagcggggg cgttaccgcc tgttgcacgc tggcggtagt
     5041 cctggcggct gtcttcatga ctcagcttgt ccaccagttc gttaaaggcg gtttgctgtg
     5101 cctgcagggc agtctccagc tcagacaggc gttcttcctg ctcagacagg gatttttcgg
     5161 tgcgtgcgct caggttctgc tgctcagtgg cgaccagctc cacggcctta tgcacatcag
     5221 agaaccgggc gtcatcggac tgctcttttt tggtaaacag cgccgtgacg cgggcaaaca
     5281 gggacggttt gtcgtcctgg acttcttcca gttcgatcac cgtttcctct gcggcggtaa
     5341 agagattggc gggattctgc ttgcggtttg ccagcgggtt atgggctgca ctggcgctga
     5401 atgtcagcat ttcagtgccc agactggcag ggtcatcagt ggcagccagg ccgactaggt
     5461 aggctttgcc cgtatcagcg aacttcgggc tgacttccat aaaggtgaat aatttctggc
     5521 cttttttcac cagttccacc agggactccg ttggctcaac gtcagcatac agcgccatct
     5581 tgcctgccag cggaccttcc gtgatttctt cagcaaacag cgccgtcacc ttgccgtagc
     5641 ggttaaaggt gctgtccggc agataagact tgatgtgctc aaggttaatc agcgcggtat
     5701 acaccgccgg gttatagctg gctgccatct gttccagcca ttcacgctgg atttcgcgtc
     5761 cgtcggtggt ggcaccttcc accccgatgc gaaaacgctt tgctttcact gtcatgagcc
     5821 gtgctccgtt agaaaaaact tactggagcc ttatggttgc ggtgataggg gcagtgaaac
     5881 aatgcgcggt atttgtaccg acaaccacac aaaccgcagg cggggaaagc cttcattcaa
     5941 ggctgtaggt ttgtgccatg aacaccacac tgacacccgc agatctcgat ccccgtcggc
     6001 aggccatgct gctgtacttt cagggatacc gcgtagcccg cattgctgaa atgctgggcg
     6061 agaaagttgc aaccgttcac agctggaaaa aacgcgacaa gtggggtgac tatgggcctc
     6121 tggatcagat gcagctcacc accgccgcac gctactgcca gctcatcatg aaggagcaca
     6181 aagaagggaa agatttcaaa gagattgacc tgctggcgcg ccagtctgag cgccacgcgc
     6241 ggatcggcaa gtttaacaat ggcggcaacg aagccgactt aaaccctaac gtcgccaacc
     6301 gcaacaaagg cccacgccgt cagcctgaaa agaatgtttt caccgatgac cagattgaga
     6361 agctggaaaa aattttccat tcctccatgt tcaactacca gcgccactgg tgggaagccg
     6421 gaaaaaccaa ccgcatccgc aacctgctga agtcacgcca gatcggcgcg accttctatt
     6481 ttgcccgtga agccctgatt gacgccctgc ttaccggacg taaccagatt ttcctttctg
     6541 ccagtaaggc acaggcccac gtcttcaaac agtacatcat cgactttgcc aaagaagtgg
     6601 aggtggagct gaaaggcgat ccgatggtgc ttcccaacgg ggccacactg tatttcctcg
     6661 gcaccaatgc ccgcactgcc cagagttatc acggtaacct gtatctggat gaatatttct
     6721 ggataccgaa atttcaggag ctacgcaaag tggcttccgg tatggctatt cacaagaaat
     6781 ggcggcagac ctatttttcc acaccatcca gtctgaccca cagtgcttat ccgttctggt
     6841 ccggtgcgct gttcaaccgt gggcgcaaca aagctgacaa ggtggacatc gacctgtccc
     6901 acagcaatct ggcccccggc cggctgtgcg cagacgggca ataccgccag atagtcaccg
     6961 tggaagatgc ggtgcgcggc gcctgtaacc tgttcgacct tgaccagttg cgcatggagt
     7021 acagccctga cgaataccag aacctgctga tgtgcgagtt cgtggacgat ctcgcgtccg
     7081 tgttcccgct cagcgaattg caggcgtgca tggtggacag ctgggaagtc tggaccgact
     7141 ttcatgcact ggccctgcgc ccgtttggct ggcgcgaagt gtggatcggt tatgacccgg
     7201 caaaaggtac gcagaacggc gacagcgccg gatgcgtggt ggtggcaccg ccagccgtgc
     7261 caggcggtaa gttccgcatt cttgagcgtc accagtggcg cggaatggac tttcgcgccc
     7321 aggctgacgc catcaaaaaa ctgactgaac agtacaacgt gacctatatc ggcatcgact
     7381 caaccggcgt tggtcacggg gtttacgaga acgtgaaagc gttttttcct gccgtccggg
     7441 agtttgtcta caaccccaac gttaaaaacg ccctggtact caaggcctac gacattatca
     7501 gccaccgccg tcttgagttt gacgccgggc acaccgacat tgcgcagtca ttcatggcaa
     7561 tccgtcgcgc caccaccgcc agcggcaacc gcccgaccta tgaagccagc cgcagcgaag
     7621 aagccagcca tgccgatctg gcctgggcaa caatgcacgc actgtttaac gaaccgctgc
     7681 agggcgagtc cgccaatacc agcaatattg tggagatttt ttgatgggaa agagtaagaa
     7741 gaaccgcgct gcggcgacga aacagaccca gcataaaaac cagacttcag ccgaagcatt
     7801 cagcttcggc gatcccgttc cggttctgga ccgccgtgaa ctactggact atgtggaatg
     7861 cgtacagaca gatcgctggt atgagccgcc agtgagtttt gacggactgg cgcgcacctt
     7921 ccgcgccgcc gtgcatcaca gttcaccaat tgcggtgaaa tgcaacattc tgatcagtac
     7981 ctacatccct cacccgctgc tcagccagca ggctttttca cgttttgtgc aggattatct
     8041 ggtatttggt aacgcttacc tggagaaacg cacaaaccgg ttcggagagg tcatcgctct
     8101 tgagcctgct ctggcaaaat acacccgacg cggattagac ctggatacct actggtttgt
     8161 gcaatacggc atgaccacgc agccgtatca gttcacgaaa ggaagcatct ttcatctgat
     8221 ggaaccggac atcaaccaag agatctacgg cctgccaggt tacctttctg ccattccgtc
     8281 agccctgctc aacgagtccg ccacgctgtt ccgccgatag tattacatta acggcagtca
     8341 tgcaggcttc atcatgtaca tgaccgatgc cgcgcaaaac caggaggatg tgaacaacct
     8401 ccgcaatgcg atgaaaagcg ccaaaggacc aggtaacttc cgcaatctgt ttatgtactc
     8461 gcctaacggc aaaaaggacg ggcttcagat catcccgttg tcagaagtcg cggcgaagga
     8521 tgagtttctg aacatcaaga acgtgagccg ggatgacatg atggcggcgc atcgtgtgcc
     8581 accgcaaatg atggggatta tgcctaataa tgtcgggggg tttggggatg tggagaaggc
     8641 gagcctggag tttgtacgta acgagttaat accgttacaa aaaagaatga tggaaataaa
     8701 taaattggta agtgagaaca ttgttaaatt tgatagttat aaactagcta cttaacgtaa
     8761 tcactaaatg aggttcttta acacagctaa aaaatttatt aatagccagc agtttttatg
     8821 aatttcttca gcgtgcagat acacgctgaa gatgcaaaaa atcatatgag acgaccgtct
     8881 ggacttctgt tacctaaatg taattcacag agtatccacc taatcacatc aggtcgaatt
     8941 aacccagcta caaaaaccga attccaatta tttttacctt tatgtttttc atccaacagc
     9001 aacaactcgc gagtcaacaa ctcatataca tcgctataag tagaaagact cttattcagt
     9061 cctctaataa caagctcagg atataagtaa aacgactccc attgttcaga caaatacccc
     9121 ttaatattat tcttgataac aacattatca agatgatact taacattgtt atattctggt
     9181 gacattgggt caattatgat ttttacatca attgtaggtg ttcgccctaa tttagaaaaa
     9241 ttagcacata ttaatctttg ttttaatata ttatcaaaat atggatgcag catccgatgg
     9301 cctgcagaat tagctatagt agtacttttg aaagtattac atttgcaagc aggaaccaaa
     9361 ttcttagtga ataaagaaaa ttctggatag ttttccttgg gtaaaacatg atccaaagtc
     9421 ccgctatgca ttgaaccaca cattggacat agagagttag aattagctgc tcttatatca
     9481 tcaattatag ataaacactt tgcgggattg ttataataat atctcaaagc ttcagcaata
     9541 ttgttactca atacgccaca agaattgaca ttaagatacc ctttattctt tatgtacgat
     9601 ctatatgcat taagtataaa tgtatcctgt ccattcagaa cagaatgatg ttttaatctc
     9661 ttatttgcag atagtttttt aaatgcagaa taatctttaa aaacaggtct ttttaattta
     9721 ttcatttcaa ttgcccattt catttctcaa cgcagttaat acattaagtg ataagtcctc
     9781 gctatattta gattcaacat catcccaaga catattcttt gcaattatat tgttttttac
     9841 tttatttaaa atttgagttg gttcactctc accgaaaaca aaatatgaga tatttcctat
     9901 attcgcccca aaagtactca atctcggttt ttcgctaaca attaccccat catctcgtct
     9961 tctgagtatt gtcacttgct ccttaaaaac ctcccgaaca agataaaccg aatgcgttgc
    10021 tatgatagct gaagagcctg tcttttctaa taaattatca agcaatgcca taaatttatt
    10081 aataaatgaa ggatggagat gtgtttctgg ctcatctatt aatagaagag tcccattctc
    10141 aatatacaaa cagacttgta cacaaaactt aataaacgat atttccccac tactcaaagg
    10201 gtaacattta ttttcaataa gcctcaaagg ctcgccagag agaataattt cagaatataa
    10261 tgatagtcta gattcttcgc ctcgagaatt aagctcattt aatttaacaa atggtgaatt
    10321 ttcaccgcca catttgatta ctaaatcgtt gttactattt agaacactca gtgcatcaac
    10381 aaatatattc cacctttgat tatagccgat agcgtcgtta ctcctcgcta gttgcactat
    10441 taaatcattc aagtttaatt tggattttga ttcacgattt aaagtcaatc ttttgtacca
    10501 tatcaatgat tttattcttt tatcggttgg aaatgaacac ttactttcat ttgttggaga
    10561 aaaagcaatg agcctactaa tttgaattcg ttcttcaatg ctcacaccgt tagaatcaac
    10621 tacagccacc aaattatcct ttcctttaat cgcagccaat gcgatttctc taagcgtttg
    10681 gctttttcct acaccattct cgcctataat tatggaaatt ctttttggta aatcatgctc
    10741 gtgatcaaaa ttaaaaacat aagatacatc ttcttcatta actttattcg aatagctaat
    10801 cttgatgtgc tgtgataaat tacccaactc ctcatattga ataccggaaa gaactgttcc
    10861 tgcatttttg aaagtaaaat acgactcaga ctctctaatg aaagatttat taaagatatc
    10921 agaagagatt gcttttttcc tcaaattctc tgcactagcg tcacttttct tagaaacaac
    10981 atcattaatg aaatttaata tatatttgga ttcattcacc ccaaaaaatc ttactagtct
    11041 tcgataatta ttcatatcct gaagcatgac aaaataatca ttaaacccct catcctttaa
    11101 attagattct tcctttttct tcactcgcct tatcagttct gcttttccat ttcgttcctc
    11161 ctctgaattc aaaaaaccaa tataaccatt cagtgaaatt atatccttac actctttttt
    11221 attaaaaata gatatttcga ctctactcaa atatccaaaa tcattccaat cgcttcttga
    11281 tgggactatt tttatataat taccagaatc agatatctgt tgattatttg taattaaaaa
    11341 atataaacta taatttttat ttttcttgac taacattatt accctctcac ttcattagtg
    11401 atgatttatt ttggaattat tttacacact tatacctagc gcgcaatcgt atccccgcca
    11461 cgcctgcccg ctttatgtag aggttttcat gcacctgcat gatctacgca aaagcccgcc
    11521 agttctggcg ggccttagca aaaacgatcc tcaaacgatc atgcgatctc atgcggcata
    11581 gacatgcact acagagctaa cgcctcgcaa gggctcgttg ttcaaccttg ctgacgccag
    11641 aagctagttc agacgccagc aacgtttctt aatgcagcca gctgtcgtct tcccacacct
    11701 tctgcataat tttcatcact tgttttcttt cttcgtccag ttgcaatcca gtaagttcca
    11761 caccgttaga gctacctttg cggatacgaa ttaccgtttt gggatacaga gggcgcagat
    11821 tgcggtaaag ctcggattca agagcgtcca gggtagactg gctaatcttc tgctctttat
    11881 cgatcattat ttcaatgcgc ataaaagtca cctcagctga tgacatccat tgagcggttg
    11941 tattcgtggg ttctgatttt tgccatgagt tcatcagtca attcagaaac ccactgcaga
    12001 gccagcccct tctcttcatc actacactca ctagccgcta caagcttaag aaaaaaatca
    12061 atgcgctgga gcttcaaaga ctccaaaaaa tagtcctgca tctttcctcc tatgacacca
    12121 cacgcaatac tgtatgcata accactgttt atatttacag catataataa tcttactgat
    12181 gtaaaacgtt tttttacgtt catcagcctg atatgcctgg tattattaag agcacgaatt
    12241 gttaacccgc gtaattaata caggttccgc cactgatcat cttcctgcaa acgctggttc
    12301 cgatagaaga tacgcaggcc tgctcctgac ggaatactgc ctccgcgaag gagtaaatcg
    12361 acctctttct cgctgccatc aaatcctctg gacttcagct catacacgag ctgcagtcgc
    12421 tgatggtctg taattcgctg tttgtagtct ttacgccgtt tcggtttcac caggcgtaac
    12481 cttgctgcca gttcccggcg ctcttttttg ctcatactgt gcaggtaatc gtgcaactcc
    12541 ttgtcatcca tgctggtaat gtccgttctg gggttcccat cagctgattt atctttctcc
    12601 tgttggttca aattttcagc aaggagacag ttattgccac gagtccaagg ggcgcaagcg
    12661 ccctggtcgg ctgccgcctc ctgaacgtca acggctttac gaaccatttt ccacttcact
    12721 gcatgagtgc agatcttgcc ttctgcaatg ggtgaccaga tgccataaat acgaataccg
    12781 tgatcgccat aggcggtcgg ctcttcattg atttcataag cggttctgat caagtgatat
    12841 ttgcgaggaa ccagcacgcc gccctgcctc ataatgtagg tggcaaaaca gccagcatca
    12901 gcagcagcca ggatggcatc aaggcgcggg ttatccagta ccggcgcacc tgcttttttg
    12961 tcaccctgct gccttgccgc ctgaccagcc aacaaccgca gttcacggta agcctgacgc
    13021 cctggaatac caaagaagcg gaattgctga acacgatgca gagacgccca gggattaacg
    13081 tattcagcgt tatcacgcag ggatttaccc gtttccttgc tgatctcgcc agccagacca
    13141 cgcccgtcaa tgttcttact gatgtatttc gcgatgtagc ttgtcggcgt tcctttgcgc
    13201 gggtttatca gctcagattt aaagcgtgga ccagtgttat tacccagttc ctcgcggtct
    13261 tcacggatgg caaacttacg caacaatgca gtaatggcgc ggcggtcttt tttgcgcata
    13321 aaacacaaca ggtgccagtg aactgtaccg tcatgatgcg gctcagccac ccgcacgcca
    13381 taccagcgca acccggcttt gtgcatcgcc ttacgaaatg cagcaaacat gccgaccaga
    13441 taatcgctgc tttgtcttac cgtcgcattt gtccaggttg ggtttggtct gccgttattg
    13501 agcgtggaat ggaaacgtga cggacaggta atggtgtaga aaacggcgca gtcaccgcgc
    13561 atttccgcga taagctccag acctttaaca caggccatca tctcattgcg gcggtgcgcc
    13621 gggttgctgc tgctggcgtt taccacgtct tccatatcca gcgtgtcgcc ctcttcgttc
    13681 accagttcat gagaacggaa aaactccaat gacttgcggc gctgctcacg tttatgcatc
    13741 acggcttcat agctgacata gggagatgct tttttgctga ccaggcagac agcacgcaac
    13801 tgctcttccc gccattcgca acgcattttc cataatttcc ggtaccacca gtcggcgcac
    13861 aacatacgcg ccagcgaacc cggaatgagt tcatagggca cgggtttacg gcggtttctt
    13921 ttccgacgga gttgctcaaa cgcaggcggg atgacatcca gacgcagggt ttccgctgcc
    13981 accttttccc atgtcttgcg gatttcttct ggcttaacgt catcggtggc atacaaatca
    14041 ccacaagctg catcaaggca catgctcata tgcgcagcga caagggtaga caggcgtttc
    14101 acctgatcct gactcatttc aggcagaatc agcaggccgt ccagccctac atggcttgcc
    14161 ataaaacgaa aagatgcaga tagctggctg tcgcgtacat gctccagtcg ttccagacat
    14221 ggcttaatcg tctcacgtaa atagcgggaa taagcctttg gcctgcccag gctgctgaag
    14281 tattcaatac gttgcatcag cggcttgctg atatgggaag gctgggcgtt gacgtccgcc
    14341 agaatgacca tatccggatt aaaacgctgc tgctcatgcg ccagctttgc ccggctaatg
    14401 agcttatcct gctccatttc gtgctggaca ggatcacgtg attcataaaa aaaataacgc
    14461 tcccagacct gatcactcag tgcctcgcgg cgcaactgtt cctgctcgtt atcggcagcg
    14521 tacagagtga tcaggtttga aagcgcagaa accggcgcaa cttccgccgg gtccagataa
    14581 gggttaatgg cctttttcgg gctgttccat gagaacgctg cggcagcctc gttaaagccg
    14641 cagcagttgt tcatatcggc atggctcatg cacgtactcc gtacacggca gaactatcca
    14701 cgccacgcga ataatcaaat cccacccagc agcgcggccc ggaaacagca atgatttctg
    14761 ttgctgattt accctcgcca gctgccacac cgatgctgcg ttttaccttg atatagtggt
    14821 gagtaaaatt gcgatacagc gaacggatca gggatgtgtc actgttagaa acaatgaccg
    14881 gatgtccttc tgatgaccga tgttcaagaa cggatgctag gtgatactgg tcatcttcag
    14941 tgaaaccatc agtgtgatag ccggaaaacg taccgtcata cggtggatcg caatacacca
    15001 catcccccgc cttcaacatc gccagcgttt catcaaagct ggcgcagata aacgttgctc
    15061 gctgggcttt ttctgcaaat gcgcgaattt ctttttcagg gaaatacgga tttttataat
    15121 tgccgtaggg aatgttgaaa tgcccgctct tgttatagcg acataaacca cggtaaccgt
    15181 gacgattgag atacaggaaa tataccgctt tcatgaaatc agtaatttca gttgagtaat
    15241 taaactcctg ccttatgttg taataagcca cctccctgtt tgcgatctca aataaaactc
    15301 tgg
//
LOCUS       DAJVUY010000099        15111 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.099, whole genome shotgun sequence.
ACCESSION   DAJVUY010000099 DAJVUY010000000
VERSION     DAJVUY010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15111
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.099"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..411
                     /locus_tag="OQQ72_002726"
     CDS             <1..411
                     /locus_tag="OQQ72_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS2012395.1"
                     /translation="NSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEF
                     GGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIG
                     YAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR"
     gene            427..909
                     /locus_tag="OQQ72_002727"
     CDS             427..909
                     /locus_tag="OQQ72_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HCS2012396.1"
                     /translation="MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAG
                     DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNE
                     GLSLKRANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP
                     "
     gene            complement(986..1333)
                     /gene="rplS"
                     /locus_tag="OQQ72_002728"
     CDS             complement(986..1333)
                     /gene="rplS"
                     /locus_tag="OQQ72_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCS2012397.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(1375..2142)
                     /gene="trmD"
                     /locus_tag="OQQ72_002729"
     CDS             complement(1375..2142)
                     /gene="trmD"
                     /locus_tag="OQQ72_002729"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCS2012398.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(2173..2721)
                     /gene="rimM"
                     /locus_tag="OQQ72_002730"
     CDS             complement(2173..2721)
                     /gene="rimM"
                     /locus_tag="OQQ72_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HCS2012399.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2740..2988)
                     /gene="rpsP"
                     /locus_tag="OQQ72_002731"
     CDS             complement(2740..2988)
                     /gene="rpsP"
                     /locus_tag="OQQ72_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCS2012400.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(3125..4486)
                     /gene="ffh"
                     /locus_tag="OQQ72_002732"
     CDS             complement(3125..4486)
                     /gene="ffh"
                     /locus_tag="OQQ72_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCS2012401.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4653..5444
                     /locus_tag="OQQ72_002733"
     CDS             4653..5444
                     /locus_tag="OQQ72_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HCS2012402.1"
                     /translation="MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVC
                     HAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI
                     NLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL
                     AFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWF
                     VYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS"
     gene            5465..6751
                     /locus_tag="OQQ72_002734"
     CDS             5465..6751
                     /locus_tag="OQQ72_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS2012403.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6806..7399)
                     /gene="grpE"
                     /locus_tag="OQQ72_002735"
     CDS             complement(6806..7399)
                     /gene="grpE"
                     /locus_tag="OQQ72_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCS2012404.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7522..8400
                     /gene="nadK"
                     /locus_tag="OQQ72_002736"
     CDS             7522..8400
                     /gene="nadK"
                     /locus_tag="OQQ72_002736"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HCS2012405.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCKKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8486..10147
                     /gene="recN"
                     /locus_tag="OQQ72_002737"
     CDS             8486..10147
                     /gene="recN"
                     /locus_tag="OQQ72_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCS2012406.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            10296..10637
                     /gene="bamE"
                     /locus_tag="OQQ72_002738"
     CDS             10296..10637
                     /gene="bamE"
                     /locus_tag="OQQ72_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HCS2012407.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
                     NIDNKPALSGN"
     gene            complement(10699..10989)
                     /locus_tag="OQQ72_002739"
     CDS             complement(10699..10989)
                     /locus_tag="OQQ72_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HCS2012408.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10979..11416)
                     /gene="ratA"
                     /locus_tag="OQQ72_002740"
     CDS             complement(10979..11416)
                     /gene="ratA"
                     /locus_tag="OQQ72_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010376629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HCS2012409.1"
                     /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP
                     GQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRI
                     EFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11587..12069
                     /gene="smpB"
                     /locus_tag="OQQ72_002741"
     CDS             11587..12069
                     /gene="smpB"
                     /locus_tag="OQQ72_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HCS2012410.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            12284..12646
                     /gene="ssrA"
                     /locus_tag="OQQ72_002742"
     tmRNA           12284..12646
                     /gene="ssrA"
                     /locus_tag="OQQ72_002742"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12807..15111)
                     /locus_tag="OQQ72_002743"
                     /pseudo
     CDS             complement(12807..15111)
                     /locus_tag="OQQ72_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
BASE COUNT         3706 a         4060 c         3542 g         3803 t
ORIGIN      
        1 aattccgatg cccgaaaaac gtcggcgtta ctatttcttg atggcgataa tttcaaatat
       61 atcaatgata cctggggtca tgcgacgggc gatagggtct tgattgaaat cgcaaaacgg
      121 ttagctgaat ttggcgggct gcgacataaa gcataccgcc tgggcggcga tgaattcgct
      181 atggtgctct atgatgtaca gtcggaatct gaagtgcaac agatatgctc agcactgaca
      241 caaatcttta atctcccgtt tgatcttcat aatggccatc agaccaccat gacattaagc
      301 attggttacg cgatgaccat tgagcacgcc tctgcggaaa aattacaaga gcttgccgat
      361 cacaatatgt atcaggccaa acaccagcgt gccgaaaagc tggtgagata acaaggatat
      421 atcgatatga taaagcacct ggtagccccc ctgattttca cctcactaat actgactggc
      481 tgccagtccc ctcagggaaa gtttactcct gagcaagtcg ccgctatgca atcttatgga
      541 tttactgaat ccgccggcga ctggtcgctg ggcttatcag atgccattct gttcgcaaaa
      601 aatgactaca aattgctccc ggaaagccag caacagatcc aaaccatggc agccaaattg
      661 gcctcgacag ggctaacaca tgcccgtatg gatggacaca ccgataacta tggtgaagac
      721 agttacaacg aaggcttatc attgaaacgg gcgaatgtcg tggccgatgc atgggctatt
      781 ggtggacaaa ttccacgcag caatctcacc acacagggtt taggaaaaaa atatcccata
      841 gccagtaaca agaccgccca gggccgcgcc gagaaccgcc gcgtcgcagt ggtgattaca
      901 accccttaaa acacgagcaa acagacaaaa aaagggccag ccaattggcc agcccttctt
      961 aacaggatgt cgcttaagcg aaatcttagt taagacgctc tttgatacga gcagccttac
     1021 cagtacgctc acgcaggtag tacagtttag ctttacgaac agcaccacga cgtttgacag
     1081 aaatgctgtc aactaccgga gagtgagtct ggaagacacg ctcaacgcct tcgccgttgg
     1141 aaattttacg aacagtgaat gcagagtgca gaccgcggtt acgaatagcg ataaccacgc
     1201 cctcgaatgc ctgcagacgt tttttggaac cttcaacaac ccatactttc acttccacgg
     1261 tatcacccgg acggaaggaa ggtacgtcct gcttcatctg ctcttgttca agttgcttaa
     1321 taatgttgct cataatttaa tctcttatcc tgggtaaact gatatctcgg gggcttacgc
     1381 catcccatca tgtttatgtt gctgttgtgc gtgttccgtt ttgaactccg ccagcaacct
     1441 tgcttgctct tcagtcagag ccaggttttc cagaagttca ggtcttctaa gccaggtacg
     1501 gcccagcgac tgtttcaaac gccagcgacg tatctcggca tggttgcccg acagtaacac
     1561 tggcggaact tccatccctt ctaacacctc aggccgcgta tagtgcgggc aatccagcaa
     1621 tccttcagca aaggaatctt ccgttgccga ggcttcatgt cccagtaccc ccggaataaa
     1681 ccgggaaacg gagtcaatca gcgtcattgc tggtaactca ccaccactga gaacgtaatc
     1741 gccgattgac cattcttcgt caatttcggt ttggatcacg cgctcatcta taccttcgta
     1801 gcgaccgcac accagaatca atttttgatt cgttgccaat tcgctgacgc ccgcttgatc
     1861 aagcttgcgt ccctgtggtg acagataaat cacctttgcg ccttcacccg ccgcggcttt
     1921 tgctgcatga atggcgtccc gcaagggttg caccatcatt aacatccccg gtccgccgcc
     1981 gtaaggacga tcgtccacgg tacggtgccg gtcatgcgtg aagtcgcgag gactccagct
     2041 ctggatgctc agcaggccat ttttaactgc ccggccagtt accccgtaat cggtaattgc
     2101 gcggaacatt tcaggaaaca ggctaattat gccaatccac atagcgccgt cttttaccgt
     2161 ttatccggtg gtttaaaaac caggatccca atctacttcg attgaacgag tagtgagatc
     2221 gactttcttg ataacctgcc catcgaggaa cggtacgaga cgttccttga taccaaacgc
     2281 atctttcagg tttgccttaa tgacgagaac gtcattagat ccggtttcca tcatatcgac
     2341 gactttaccg agatcgtagc cttcagtggt tactacctgg cagcccatca ggtctttcca
     2401 gtagtagtca ccctcttcaa gctgaggcaa ctgcgatgaa tccacgacaa tttcacaatt
     2461 cgtcagcagg ttcgccgcat cacgatcgtc aacgcctttc agcttgatga tcatgtcctg
     2521 attgtggtgc ttccagcttt ccagctggac ttgctgccac tgacccgcct tctggataaa
     2581 ccagggctga tagtcaaaaa tgctttcggc gtcttcggtg gaagaaaaca ctctgagcca
     2641 cccacgaata ccgtaagacg aacccatttt tcccaaaacg atgggatcaa caggtgcttg
     2701 cgcggtgagt tgtttgctca tcatgaccac cgtgacagat taagctgctt tgtttacttc
     2761 tttgatcagc gcagcaacgc gatcagaaat agttgcgccc tggccaaccc agtgagcgat
     2821 gcgatccaga tccaggcgag tgccttcttc tttttcgcta gcgattgggt tgaagaaacc
     2881 aacgcgctcg atgaagcgac cgttgcgtgc attacggctg tcagcgacaa caacctggta
     2941 gaacggacgc tttttagcgc cgtgacgtgc taaacgaata gttaccataa catcctcttg
     3001 tgtgaataaa acaaccggac cccatcgagg aacggagtcc ggtgtcatat taaaagcccg
     3061 aaaattttac tgatttctgg agaaaatgca atcagcagtt aataactctg tcgcataagg
     3121 tcatttagcg accaggaaat cccggcggca tcatcccctt catgcttctc atcatcttcg
     3181 ccattccgcc cttcttcatt ttcttcatca tgcgctgcat gtcgtcgaac tgtttcagaa
     3241 gacggttaac gtcctgcacc tgcataccgc aaccggcagc aatacggcgt ttacgcgaac
     3301 ctttgatgat ttctggctta gcgcgctctt tcatcgtcat cgagttgatg atggcttcca
     3361 tacgcaccag cactttatcg tccatctgtg acttgacgtt atccgggatc tgccccatgc
     3421 ccggcagctt gcccatcagg ctggccatgc cgcccatatt tttcatctgg cgcagctgct
     3481 caagaaagtc gttgagatcg aagccgtcac cttttttcag cttgctggct aatttctctg
     3541 cctgcgcgcg gtcaactttg ctttcgatat cttcgatcag cgacagtacg tcgcccatgc
     3601 cgagaatacg cgacgcgatg cggtccggat ggaacggctc cagcgcctca gttttctcgc
     3661 caacaccgag gaacttgatc ggtttgccag tgatgtgacg aatagagagc gccgcaccgc
     3721 cgcgggcatc gccgtccact ttggtcaaca ctacgccggt aagcggtaac gcttcattga
     3781 atgcttttgc cgtattggcc gcatcctgac cggtcatggc gtcaaccaca aacagggttt
     3841 caaccgggtt aatcgacgca tggacttgtt tgatctcgtc catcatcgct tcgtcaacgt
     3901 gcagacgacc agcggtatcc accagcagca cgtcgtagaa tttcagtttg gcttctttca
     3961 gcgccgcgtt aacgatatct accggcttct gaccaacatc agaagggaag aaatcaacgc
     4021 ccacctgctc tgccagcgtc tcaagctgtt tgattgccgc cgggcgataa acgtcggcag
     4081 aaaccaccag cactttcttc ttgtgcttct cgcgcaggaa cttaccgagt ttaccaacgc
     4141 tggttgtttt accggcacct tgcaggcccg ccatcagcac gaccgcaggc ggttgcgccg
     4201 ccaggttcag ggtctggttc tcttcgccca tcgccgcaac cagttcgtta cggacgattt
     4261 tgacgaactc ctgccccggc gtcaggctct tattaacttc atgaccaacc gctttctctt
     4321 ttacgcgatt gataaactca cgcactaccg gcagagcgac atccgcctcc agcagcgcca
     4381 tgcgcacttc gcgcagcgta tcttttacgt tgtcttcagt taggcgtcca cggccactga
     4441 tattgcgcag cgtgcgcgac aaacgatcgg ttaaattatc aaacattgtc tctcgcctgg
     4501 ggtggaaacg gttggccgca atcgcgacac atcatcagta ttttgccgca gtataacatg
     4561 aaggcgtctt tgttgttatg caacggttgg agcagcgttc acctgacgct atactgcttc
     4621 tctttcttat tgctcaaact gttgacatca ctatgcccgt ttttgctctg ctcgcgcttg
     4681 tcgcctactc cgtcagtctt gcgctgattg ttcccggtct gctgcaaaaa aacggcggct
     4741 ggcggcgcat ggctattatt tctgcggtca ttgcgctggt ctgccacgca atcgctctgg
     4801 aagcccgcat cctgcccgac ggtgatagcg gacaaaacct cagcctgctg aacgttggtt
     4861 cattggtcag tttgatgatc tgtacggtaa tgaccattgt ggcttctcgc aatcgtggct
     4921 ggttgctgct acccattgtc tatgcctttg cgcttatcaa cctggcgctg gcgaccttca
     4981 tgcccaatga atacatcacc catctggaag caacgcctgg gatgctggtg cacattggct
     5041 tatcgctctt ttcctatgcc acgctaatta tcgccgccct gtacgcgctg caactggcgt
     5101 ggattgatta ccaactgaag aacaagaagc tggcatttaa ccaggaaatg ccgccattga
     5161 tgagtatcga gcgtaaaatg ttccacatca cgcagattgg cgtggtgctg ctaacgctca
     5221 cgctttgcac tggcctgttc tacatgcaca acctatttag catggaaaat atcgacaagg
     5281 ctgtgctctc tatcgtggcg tggtttgtct atattgtgct gctgtgggga cattaccatg
     5341 aaggatggcg tggacgccgc gtcgtctggt ttaacgttgc gggcgcggta attctgacac
     5401 tggcctactt cggcagccga attgtccagc agttaatcag ctaaacccag aaaaggagtt
     5461 tcccctggaa cacatttcta ctactacgtt gatcattatt ctgatcatca tggtggtcat
     5521 ttcagcctat ttttccgggt ccgaaaccgg aatgatgacc ctcaaccgct atcgtctgcg
     5581 acatatggcg aaacagggta atcgctcggc caaacgcgtc gaaaaattgc tgcgtaagcc
     5641 agaccgcctg ataagcctgg tgttaatcgg caataacctg gtcaatattc ttgcctccgc
     5701 gctcggcact attgttggga tgcgtttgta cggcgatgcg ggcgtggcaa ttgcgactgg
     5761 tgtgctgact tttgtcgtac tggtatttgc tgaggtattg ccgaaaacca ttgccgcgct
     5821 gtacccggaa aaagtcgctt atccgagtag ttttctgctg gctccgctgc aaattttgat
     5881 gatgccgctg gtctggttgc tgaatgctat cacccgtatg ctgatgcgca tgatgggtat
     5941 caaaaccgat atcgtggtta gcggctcttt gagcaaagaa gagttgcgca ctatcgtgca
     6001 cgaatcacgc tcacaaattt cccgtcgcaa tcaggatatg ctgctgtcgg tgctcgatct
     6061 ggaaaaaatg accgttgatg acatcatggt gccgcgcagt gaaattatcg gtattgatat
     6121 caacgatgac tggaaatcga ttctgcgcca actctcccac tcacctcacg ggcgcatcgt
     6181 gctctaccgt gattcgctgg acgacgccat cagtatgctg cgagtacgtg aagcctggcg
     6241 attgatgtcg gagaaaaaag agttcaccaa agaaaccatg ctgcgcgccg cggacgagat
     6301 ctattttgtg ccggaaggta cgccgctcag cacgcagttg gtaaagtttc agcgcaacaa
     6361 aaagaaagtc ggcctggtcg tcaacgagta tggagacatt caggggctgg tgacggttga
     6421 agatattctg gaagagattg tcggcgattt cactacgtcg atgtcgccaa cacttgccga
     6481 agaggtcacg ccgcaaaacg acggttcggt gattatcgat ggcaccgcca acgtgcggga
     6541 aatcaacaaa gcctttaact ggcatctacc ggaagatgat gcccgcacgg ttaatggcgt
     6601 cattcttgag gcactggaag agatccctgt cgcaggcacc cgcgtgcgta ttggcgagta
     6661 cgatatagat attctcgacg tacaggacaa tatgattaag caggtaaaag tttttcctgt
     6721 gaaaccgctg cgcgagagtg tggcggagta acgaaaacgg ccctgcattc gcatgcaggg
     6781 ccgtgaatta ttacgaaaac agaaattacg cttttgcttt cgctacagtt accatcgccg
     6841 cacgaatcgt acgaccattc agcgtataac ccttctgcat aatgcccagt acgttacctg
     6901 gcgcaacgtc atcagattcc accattgcga tagcctgatg cacattcggg tccagcggca
     6961 cgttagtttc ggcgatcact tcaacaccaa acttacgcac aacatccagc atcgacttca
     7021 gcgtcagctc aatgccttca accatcgcag acatatccgg gttagcttta tcagccactt
     7081 ccagcgcacg atccaagcta tcaatcaccg gcagcaattc gttgatgaat ttctccagcg
     7141 caaatttgtg ggctttttca atatccagtt cagtacgtcg acgcaggttt tccatttcgg
     7201 cttttacacg caaaatgccg tcacgttcac gggtctgggc ttcagccagc tgagcttcga
     7261 gattcgcaat tttttcatcg cgcggatcca cctgctcagc agaagcttct ggctcaactg
     7321 cctcaatctc ttcgtgctga tccatgataa tttcttccgg ggcttgcccc tcaggcgttt
     7381 tctgttcttt actactcatg aatttctccg cgtttttttc gcattcatct cgctaacttc
     7441 gcttattatg gggatcagtt tcagggtttc aagggaagca ctcacattgt catcaatctt
     7501 cgcaacaagg acctcggaaa aatgaataat catttcaagt gtattggcat tgtgggacac
     7561 ccacggcacc ccactgcact gacaacacat gaaatgctct accgctggct gtgcaaaaaa
     7621 ggttacgagg tcatcgttga gcaacaaatc gctcacgaac tgcaactgaa gaatgtgaaa
     7681 actggcacgc tcgcggagat tgggcaacta gctgatctcg cggtagtcgt tggtggcgac
     7741 ggtaatatgc tgggcgcggc acgcacactc gcccgttacg atattaaagt tattggaatc
     7801 aaccgtggca acctgggttt cctgactgac cttgaccccg ataacgccca gcaacagtta
     7861 gccgatgtac tggaaggcca ctacatcagc gagaaacgtt ttttgctgga agcgcaagtc
     7921 tgtcagcaag attgccagaa acgcatcagc accgcgataa atgaagtggt gcttcatcca
     7981 ggcaaagtgg cacatatgat tgagttcgaa gtgtatatcg acgagatctt tgcgttttct
     8041 cagcgatctg atggactaat tatttcgacg ccaacaggct ccaccgccta ttccctctct
     8101 gcaggcggtc ctattctgac cccctctctg gatgcgatta ccctggtgcc catgttcccg
     8161 catacgttgt cagcacgacc actggtcata aacagcagca gcacgatccg tctgcgtttt
     8221 tcgcatcgcc gtaacgacct ggaaatcagt tgcgacagcc agatagcact gccgattcag
     8281 gaaggtgaag atgtcctgat tcgtcgctgt gattaccatc tgaatctgat tcatccgaaa
     8341 gattacagtt atttcaacac attaagcacc aagctcggct ggtcaaaaaa attattctaa
     8401 ttttacgcca gcctctttac tgtatataaa accagtttat actgtacgca ataacagtaa
     8461 tggtttttca tacaggaaaa cgactatgtt ggcacaactg accatcagca actttgctat
     8521 cgttcgtgag cttgagattg attttcatag cggcatgacc gtaataactg gcgagaccgg
     8581 cgcgggtaaa tctattgcaa tagatgccct cggtctttgt ctcggtggtc gcgctgaagc
     8641 cgacatggtg cgtaccggcg ctgctcgcgc tgacctgtgc gcccgttttt ctctgaaaga
     8701 tacgccagcg gctctgcgct ggctggaaga aaatcagctt gaagacgggc atgaatgttt
     8761 gcttcgtcgc gtaatcagca gcgatggtcg ctcccgtggt ttcatcaacg gtacagctgt
     8821 tcctctgtca caactgcgcg aactgggtca gttgctgatt cagatccatg gtcagcacgc
     8881 tcatcaatta ctcaccaaac ctgagcacca aaaattcctg cttgatggct atgccaatga
     8941 aacctctcta ctgcaggaaa tgaccgcacg ttatcagttg tggcatcaaa gctgccgtga
     9001 cctcgcgcat catcaacagt taagtcagga acgcgccgcc cgtgcggaac tgctgcaata
     9061 ccaattaaaa gaacttaacg aatttaatcc gcagcccgga gagtttgaac aaatcgacga
     9121 agagtacaaa cgtctggcga acagcggtca attgctgacc accagccaga atgcattggc
     9181 attaatggcc tacggtgaag acgcaaacct gcaaagtcag ctttacacgg ctaaacaact
     9241 ggtgagcgaa ttgattggca tggacagcaa actgtccggc gtacttgata tgctggaaga
     9301 agctaccatc cagattgctg aagccagcga tgaactgcgc cactactgcg atcgtctgga
     9361 tctcgatccc aaccgactat ttgaacttga acagcgcatc tcaaaacaga tttcgctggc
     9421 acgtaaacat cacgtcagcc ctgaggcatt gccacagtat taccagtcgc tactggaaga
     9481 acagcagcaa ctggacgatc aggccgactc acaagaaacg cttgcgctgg cggtaacgaa
     9541 acatcatcag caggcactgg aaatcgcgcg cgcattacac caacaacgcc agcaatatgc
     9601 agaagaactt gcacagctga tcaccgacag tatgcatgcg ctctcaatgc cgcatgggca
     9661 gtttacgatc gatgttaaat ttgacgagca tcacctgggc gctgacggtg ccgatcgtat
     9721 tgagtttcgg gtaaccacca acccaggtca gccaatgcag cctattgcca aagtcgcatc
     9781 cggtggtgaa ttgtcccgca tcgcactggc aacccaggtc atcacggcgc gtaaaatgga
     9841 aaccccggca ctgatttttg atgaagtgga tgtagggatt agcggtccaa cagcggcagt
     9901 tgtcggcaaa ctgctgcgtc aactcggcga atcaactcag gtgatgtgtg ttacccacct
     9961 gccacaagtc gcgggatgtg gtcatcaaca ctattttgtc agcaaagaaa ccgatggtgc
    10021 gatgacagaa acgcatatgc aatccctgaa taaaaaagcg cggttacaag agctggcgcg
    10081 cctgcttggt ggcagtgaag tcacacgtaa tacactggcg aatgcgaaag aactgcttgc
    10141 agcgtaaact tttttcctgc ttcacggtca gagtaaacag caaaacgccg taagaccgga
    10201 aagcaaaagg ttttaaagtg atgaaaggtc tattatcatc ggcatattac agatgagcca
    10261 cgtactgcta gggcccgaaa aggaatcaaa tcactatgcg ctgtaaaacg ctgactgctg
    10321 cagcagcagt actattgatg ttgaccgcag gctgttccac tctggagcga gtggtttacc
    10381 gtcctgacat caaccagggg aactatctga ccgctaacga cgtatccaaa atacgtgttg
    10441 gcatgacgca acaacaagtt gcgtacgcat tgggtacacc gctgatgtcc gatccatttg
    10501 gtacgaatac ctggttctat gtcttccgcc agcaaccagg tcatgaaggt gtaacgcagc
    10561 aaacgctgac gctgaccttt aacagtagcg gtgtgttgac caatattgat aacaaacctg
    10621 cgctgagtgg taactaataa taaagttgct ctcaaagacg ttaaaaaagg tgctcaatga
    10681 gcaccttttt tctgtctgtt atttattcgc tgatttttct gctcgttgcc tgcgaagctc
    10741 tttcggatcg gcaatgagag ggcgataaat ctccacccga tcgccatcat gcacactatc
    10801 gcttagtttt gccggacggc tgtaaatgcc gactttgttt ttagttaaat cgatatcggt
    10861 acgcaattcc agcaagccac tggcgcgaat agcttcttca accgtcgcgc cctcctgcag
    10921 cgtcacgcgc tgcaggtact gcttctcagg tagcgcataa gccacctcaa cggcaatttt
    10981 acctggcact gtaaacctct ttcgcacgaa ccgtaaaagc ctggaccata ttagacgcca
    11041 gctctttaaa cacgcgacca aaggcgagtt caatcaactt attggtaaac tcaaagtcga
    11101 gatgaaactc gatacgacac gcctcctggc tcagcggcgt aaacttccat ccaccaatca
    11161 atttcttgaa cggcccatcc accagattca taagaatact ttggttactg gtcaactggt
    11221 tgcgggtagt aaacgttttg ctgatcccag ccttagagac atctaccgcc gcagtcatct
    11281 gcccaggagt ggactccaga atccgacttc cggtacaacc cggcaaaaac tgaggataag
    11341 actgaacgtc attcactaac tgatacattt gctccgcgct gtagggtacc agtgcggtcc
    11401 ggctaatctg aggcataact atttccatca acaaaaatcc aacaaataat atcatttatc
    11461 ctgctgtaaa aaaaacgcta tcccggcgct gggtaacatc gggttcatgc taagatagag
    11521 ccttgtcccc cgcaggattg atatggggtg ttttcgattt cagattaccg atgattcacg
    11581 acgcttatga cgaagaaaaa agcacataaa cctggttcag cgaccatcgc gcttaacaag
    11641 cgcgcccgtc acgaatactt tatcgaagaa gagttcgaag cgggacttgc cctgcaaggc
    11701 tgggaagtta aatccctgcg cgcaggaaaa gccaatatca gcgacagcta cgtccttctg
    11761 cgtgacggag aggcatttct gtttggcgct aacatcacgc caatggccgt ggcctccacg
    11821 catgtggtgt gcgatcctac ccgtacccgc aagttacttc tcaaccagcg cgaactggac
    11881 tcattgtacg gtcgcgtcaa tcgagaaggc tataccgtag tggcgctctc cctgtactgg
    11941 aaaaatgcct ggtgcaaagt gaaaatcggc gtcgccaaag gtaaaaaaca gcacgataaa
    12001 cgttcagata tcaaagaacg cgaatggcag gtggataaag cacgtatcat gaaaaacgcc
    12061 caccgttaaa cctgcactcc aattattgac cagttcctca ccgcgcctcc ctctccggcg
    12121 gcgcgaatga acatcttatt ggctatcaca tccgacacaa atgttgccat cccattgctt
    12181 aatcgaataa aaatcaggct acatgggtgc taaatcttta acgataacgc cattgaggct
    12241 ggtcatggcg ctcataaatc tggtatactt gccgttacac attggggctg attctggatt
    12301 cgacgggatt tgcgaaaccc aaggtgcatg ccgaggggcg gttggcctcg taaaaagccg
    12361 caaaaaatag tcgcaaacga cgaaaactac gctttagcag cttaataacc tgcttagagc
    12421 cctctctccc tagcctccgc tcttaggacg gggatcaaga gaggtcaaac ccaaaagaga
    12481 tcgcgtggaa gccctgcctg gggttgaagc gttaaaactt aatcaggcta gtttgttagt
    12541 ggcgtgtccg tccgcagctg gcaagcgaat gtaaagactg actaagcatg tagtaccgag
    12601 gacgtaggaa tttcggacgc gggttcaact cccgccagct ccaccaatca tgattggacg
    12661 gtataaggac aacaccaata aaaacaggag gttagcagtc tcagcaggac accgaccaga
    12721 cggtgaagag acataaaagg atacgcaaag gagccgcggc tcctggtgac atgaaagccc
    12781 acagatgtgg gctttttcgt tgatggtcag aacgaccagt tcacaccagc taccccgttc
    12841 cacggggatt ccacaccggc accatggcta taccccaccc caagatgccc gcttaacgta
    12901 ctgctgaatg aggctttaat acctgcctgg tatattccac gtctgcccga caaatcattg
    12961 acgaaattac cgtcactatt cactttcacc cggttatcat cgacaaattc tttgcgcaca
    13021 gccgccttca gccacggctc aacttccata ccgttcccca gacgcatgtt gtaactcagc
    13081 gttgcaccca gttcacgata taaacctgcg ggtatcgact gatttcgatt ccatgccatt
    13141 ggataaatga tattcagggt tatcagcggt gaacccccgt taacgatgca tacggcgtca
    13201 ggttccagtt accatcggta aatcgcatcc cggtttcaat gtgaccgccc agcccgttgc
    13261 tgcgataact gccgttggtg gctccaccgc tgccaaccgt ggagtcgcga gcttcggtac
    13321 ctgctaatac caataaatta ccgccatttt ccagcaacat attggtcgct aaattgccgg
    13381 aaatggaaaa agtgccgtac tggtgagtac cgctgatttc aataccgtta gccgtgctcg
    13441 tctggagagc ggcaccgctg ttctggacga tatctgtcgc tttgccatta tcgttaactg
    13501 tcagcgtacc gccttcattg atctttgttt ttattgcctc tccgttagct gaaactgttt
    13561 gtattccgcc gtcgttaatc gttgtctcat tcgccacccc ctcgacgatt tgttcgccgc
    13621 cggtgagcgt cgtgcctgtc gcagtggctt ttgttttgac gatctcccgt ccgcccgtat
    13681 tgacctgtgt tttgtcagaa gaggtgtctg actccacggt taacacgccg ccatttgcca
    13741 gcaggatatt gttcgccgca ccctgctcga tgctgaacgc gacgccatcc gcgcgtgttc
    13801 ctgtgacccg cgtcgccctg gtggttgcaa ccaaagcgcc ctggctactc tgctgtatcc
    13861 ccgttgcgct gcctttctcc cgcacatcga gtgtgccgcc gtcattaagc accgagtttt
    13921 cagccagacc gccctcatta actacctgtg aacccccatt aataatggaa ccttccgctg
    13981 tcccgtttgc cataatttgt tgtaggccag agacgatatc ggtattgatt gccttaccat
    14041 aattctgaac ggtttgcgtg ccaccattga tgtgtgtttt ctctgttgac ccaccatcaa
    14101 caatttgttc accactttcg atatttgcct cagtggctaa tccatatacc gtttgcttgc
    14161 cacctttgat atttgcttta tcagaagtgg cactggcata tattgtttgg gtgccagcac
    14221 tattgagtac agtgccaaca tcttttccat aaacatccat tttgccgttg gcattaataa
    14281 tcgtatcaac tgcccgggaa ccagtgacga ctgttaatga gccagcgttt tccagcacta
    14341 catttttagc ttctgaattc ctgatgtaga aagcatcacc ataactgttg gttcctttga
    14401 taagggttcc ggaagttgtg gaagcaatta atgcgccgcc ggattgttgc tcaacatgct
    14461 tagcctcacc accgtcctga acctccagaa cgccaccatt attaagtctg gtggtatctg
    14521 ttttagcctc cttctggaca atcagcttac cgccagcatc aacggtagta tttttcgccg
    14581 aggttttagc cactaccgtc agttcgccgg tattttccag cacaacataa ttagcctccc
    14641 ctccgggtaa tagtgaagtg agagagcttg ttgtatcctt cgatatcagt ccctgcgccc
    14701 gtgttggcaa ctaaagcact gcccgtctcc tggttaaccc catgtgctat accgccggta
    14761 tagacaatca gcgagcctcc ggcgctaata ttgctgccag ttgccgtacc atctttctca
    14821 acaacctgcc ggctcccggt ggaaatattt gtcgtgtcag ctttcccgcc gctcttgata
    14881 ttttgtgttc cgctgttgat attggtaccc gtggcaatac catgattatt aatattctgt
    14941 gtaccaccat tgattatggt attggtcgcg tttccggtaa catccattac cccgccgtta
    15001 tctattcggg tcgcatcagc tttagcattc gttaaaactg acattgttcc tttatcttta
    15061 ataatcgtct tatttgccga accatatgcg tttatgtcta aatgaccacc g
//
LOCUS       DAJVUY010000100        14936 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.100, whole genome shotgun sequence.
ACCESSION   DAJVUY010000100 DAJVUY010000000
VERSION     DAJVUY010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14936
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.100"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..450
                     /locus_tag="OQQ72_002744"
     CDS             <1..450
                     /locus_tag="OQQ72_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS2012411.1"
                     /translation="QEVNAALFKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIA
                     DPAKSSSSTNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMT
                     LGQMFQLITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(491..1423)
                     /locus_tag="OQQ72_002745"
     CDS             complement(491..1423)
                     /locus_tag="OQQ72_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCS2012412.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            1787..4573
                     /gene="polA"
                     /locus_tag="OQQ72_002746"
     CDS             1787..4573
                     /gene="polA"
                     /locus_tag="OQQ72_002746"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCS2012413.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLQQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            complement(4955..5587)
                     /locus_tag="OQQ72_002747"
     CDS             complement(4955..5587)
                     /locus_tag="OQQ72_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCS2012414.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRHSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ72_002748"
     CDS             6169..6678
                     /gene="yihI"
                     /locus_tag="OQQ72_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HCS2012415.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ72_002749"
     CDS             6867..8240
                     /gene="hemN"
                     /locus_tag="OQQ72_002749"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HCS2012416.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(8430..8540)
                     /locus_tag="OQQ72_002750"
     CDS             complement(8430..8540)
                     /locus_tag="OQQ72_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HCS2012417.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ72_002751"
     CDS             complement(8651..10060)
                     /gene="glnG"
                     /locus_tag="OQQ72_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HCS2012418.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ72_002752"
     CDS             complement(10072..11121)
                     /gene="glnL"
                     /locus_tag="OQQ72_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HCS2012419.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ72_002753"
     CDS             complement(11295..12704)
                     /gene="glnA"
                     /locus_tag="OQQ72_002753"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HCS2012420.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            13077..14900
                     /gene="typA"
                     /locus_tag="OQQ72_002754"
     CDS             13077..14900
                     /gene="typA"
                     /locus_tag="OQQ72_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HCS2012421.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
BASE COUNT         3863 a         3746 c         3851 g         3476 t
ORIGIN      
        1 caagaagtga atgctgcatt gttcaaagag tatttaccgt tattacaaca aagtgagccg
       61 accattaaac aaccggtaag atggaagaac gcactcggcg aactaaatgc caatctggat
      121 atcagtattg ccgacccagc caaatcttca tcatccacaa acaaagatat caaatcgctc
      181 aattttgatg tgaagttacc gcttaatgtc gtcacagaaa ccgcaaaaca gcttaattta
      241 tctgaaggaa tggatgcgga aaaagcgcaa aagcgggctg ataaacaaat cagcgggatg
      301 atgaccttag gtcagatgtt tcagttaatc acgattgaca acaataccgc ctcgctgcaa
      361 ctgcgttata caccgggtaa agttgttttt aacggacagg agatgagcga agaagaattt
      421 atgtctcgtg ccggacgttt tgttcattaa aatactcact cgcctctgct cattcagagg
      481 cgagcaaaat ttacttgtcc tgccgctgtg atgacatcaa cgacgtcaga agtcggtctt
      541 tttcctgcca cagtgagttc agccattgct gaaaatggcg cttaaagctt ttgtcattga
      601 tgtagtcgcc atgtaactca tcggcaatag gctgtaaatc cacatgaacg acaattcgcg
      661 tcagtttacc gcttaacata tcgaagaacg gctgacggtt attgtccgga taacacagcg
      721 taacattaag cagtttatcg aattgtttac ccagtacatt tagcgccatc gcaatgcctg
      781 ccgcctttgg tggcaacaag ttttgaaaag tggagtgggt ttgctgatgt ttttcttgcg
      841 tgaaacggga gccttcaacg aaattgacaa tggtggtggg atgcaggcga aacttttcac
      901 aagaacgccg agtggtttca acatctttac cacgtcgctc cggatgacgt aataaataag
      961 cgcgggaata acgcttcata aacggcatat ccagcgccca gcacgccagg ccaagaaatg
     1021 gcacccaggc cagctgttgc ttgaggaaat atttattcat cggaatgtgc ttacgaaaca
     1081 gcacgcacag tacgacaata tctgcccaac tacggtggtt acaaataagc agataccagt
     1141 tcttcttact taacccttcc agcccgtgaa cttcccattg caggtgtggg ttcagatgca
     1201 gtaataccgc cagaccttca caccagcaat acatcataaa atcacaaaaa cgcgaaacct
     1261 ttcgccaaat gactggcaca ggtagcaata gttttacaat cccggcaatg atgatcggga
     1321 cggaacaaaa aatagtgacc aaaatggtca atacgatact cagcaaaagg gttatcgcag
     1381 cgagtattct cgtcataatg aatttattca aaaggttagc catagacagt gcgctaaaga
     1441 agcgcaaggc gcagatttta gcagaaaacg acccaaataa cggatgatcc ttaaggagaa
     1501 aaataattca tatctatcca cattagaaaa aatcccatta tctcaattat tagggatggc
     1561 tttattttta actacatgaa aaacaaagac aaacatcata ctgtaaaaag catgataata
     1621 aattaaaagc gatgtaaata atttatgcac aaagttatcc acatgacgat ttgcgagcga
     1681 tccagaagat ctacaaaaga ttttcacgaa aagcggtgaa aaactcatgt ttttatcctg
     1741 tctgtggcat cctttaccca taatctgata aacaggcacg gacattatgg ttcagatccc
     1801 ccaaaatcca cttatccttg tagatggttc atcttatctt tatcgcgcat atcacgcgtt
     1861 tcccccgctg actaacagcg caggcgagcc gaccggtgcg atgtatggtg tcctcaacat
     1921 gctgcgcagt ctgatcatgc aatataaacc gacgcatgca gcggtggtct ttgacgccaa
     1981 gggaaaaacc tttcgtgatg aactgtttga acattacaaa tcacatcgcc cgccaatgcc
     2041 ggacgatctg cgagcacaaa tcgaacctct gcacgcgatg gttaaagcga tgggactgcc
     2101 gctgctggcg gtttctggcg tagaagcgga cgacgttatc ggtactctgg cgcgcgaagc
     2161 cgaaaaagcc gggcgtccgg tgctgatcag cactggcgat aaagatatgg cgcagctggt
     2221 gactccaaat attacgctta tcaataccat gacgaatacc atcctcggac cggaagaggt
     2281 ggtgaataag tacggcgtgc cgccagaact gatcatcgat ttcctggcgc tgatgggtga
     2341 ctcctccgat aacatccctg gcgtaccggg cgtcggtgaa aaaaccgcgc aggcattgct
     2401 gcaaggtctg ggcgggctgg atacgctgta tgccgagcca gaaaaaattg ctgggttgag
     2461 cttccgtggc gcgaaaacaa tggcagcgaa gctccagcaa aacaaagaag ttgcttatct
     2521 ctcataccag ctggcgacga ttaaaaccga cgttgaactg gagctgacct gtgaacaact
     2581 ggaagtgcag caaccggcag cggaagagtt gttggggctg ttcaaaaagt atgagttcaa
     2641 acgctggact gctgatgtcg aagcgggcaa atggttacag gccaaagggg caaaaccagc
     2701 cgcgaagccg caggaaacca gtgttgcaga cgaagcgcca gaagtgacgg caacggtgat
     2761 ttcttatgac aactacgtca ccatccttga tgaagaaaca ctgaaagcgt ggattgcgaa
     2821 gctggaaaaa gcgccggtat ttgcatttga taccgaaacc gacagccttg ataacatctc
     2881 tgctaacctg gtcgggcttt cttttgctat cgagccaggc gtagcggcat atattccggt
     2941 tgctcatgat tatcttgatg cgcccgatca aatctctcgc gagcgtgcac tcgagttgct
     3001 aaaaccgctg ctggaagatg aaaaggcgct gaaggtcggg caaaacctga aatacgatcg
     3061 cggtattctg gcgaattacg gcattgagct gcgtgggatt gcgtttgata ccatgctgga
     3121 gtcctacatt ctcaatagcg ttgccgggcg tcacgatatg gacagcctcg cggaacgttg
     3181 gttgaagcac aaaaccatca cttttgaaga gattgcgggt aaaggcaaaa atccactgac
     3241 ctttaaccag attgccctcg aagaggccgg acgttacgcc gccgaagatg ctgatgtcac
     3301 cttgcagttg catctgaaaa tgtggccgga cctgcaaaaa cacaaagggc cgttgaacgt
     3361 cttcgagaat atcgaaatgc cgctggtgcc ggtgctttca cgcattgaac gtaacggtgt
     3421 gaagatcgat ccgaaagtgc tgcacaatca ttctgaagag ctcaccttgc gtctggctga
     3481 gctggaaaag aaagcgcatg aaattgcagg tgaagaattt aacctttctt ccaccaagca
     3541 gttgcaaacc attctgtttg aaaaacaggg tattaaaccg ctgaagaaaa cgccgggtgg
     3601 cgcgccgtca acgtcggaag aggtactgga agaactggcg ctggactatc cgttgccaaa
     3661 agtgattctg gagtatcgtg gtctggcgaa gctgaaatcg acctacaccg acaagctgcc
     3721 gctgatgatc aacccgaaaa ccgggcgtgt gcatacctct tatcaccagg cagtaactgc
     3781 aacgggacgt ttatcgtcaa ccgatcctaa cctgcaaaac attccggtgc gtaacgaaga
     3841 aggtcgtcgt atccgccagg cgtttattgc gccagaggat tatgtgattg tctcagcgga
     3901 ctactcgcag attgaactgc gcattatggc gcatctttcg cgtgacaaag gcttgctgac
     3961 cgcattcgcg gaaggaaaag atatccaccg ggcaacggcg gcagaagtgt ttggtttgcc
     4021 actggaaaca gtcaccagcg agcaacgccg tagcgcgaaa gcgatcaact ttggtctgat
     4081 ttatggcatg agtgctttcg gtctggcgcg gcaattgaac attccacgta aagaagcgca
     4141 gaagtacatg gacctttact tcgaacgcta ccctggcgtg ctggagtata tggaacgcac
     4201 ccgtgctcag gcgaaagagc agggctacgt tgaaacgctg gacggacgcc gtctgtatct
     4261 gccggatatc aaatccagca atggtgctcg tcgtgcagcg gctgaacgtg cagccattaa
     4321 cgcgccaatg cagggaaccg ccgccgacat tatcaaacgg gcgatgattg ccgttgatgc
     4381 gtggttacag gctgagcaac cgcgtgtacg tatgatcatg caggtacacg atgaactggt
     4441 atttgaagtt cataaagatg atgttgatgc cgtcgcgaag cagattcatc aactgatgga
     4501 aaactgtacc cgtctggatg tgccgttgct ggtggaagtg gggagtggcg aaaactggga
     4561 tcaggcgcac taagattcgc ctgaacatgc ccttttttcg taagtaagca acataagctg
     4621 tcacgttttg tgatggctat tagaaattcc tatgcaacaa ctgaaaaaaa attacaaaaa
     4681 gtgctttctg aactgaacaa aaaagagtaa agttagtcgc gtagggtaca gaggtaagat
     4741 gttctatctt tcagaccttt tacttcacgt aatcggattt ggctgaatat tttagccgcc
     4801 ccagtcagta atgactgggg cgttttttat tgggcgaaag aaaagatccg taatgcctga
     4861 tgcgctatgt ttatcaggcc aacggtagaa ttgtaatcta ttgaatttac gggccggata
     4921 cgccacatcc ggcacaagca ttaaggcaag aaaattattc gccgtcctgc gtttcttcta
     4981 caggctgcat ctcgctaaac caggtatcca gtttctgccg cagcttgtcc acgccttgtt
     5041 tcttcaacga agaaaacgtt tcaacctgca catcaccgtt aaacgccagt acagcttcac
     5101 gcaccatatt caattgcgct ttacgtgcgc cgcttgccag tttgtccgct ttggtcagca
     5161 gcaccagaac ggcgatattg ctgtctaccg cccactcaat catctgctga tccaaatctt
     5221 tcagcggatg gcgaatatcc attagcacca ccagaccttg caggctatga cgtttttcga
     5281 ggtattcgcc gagcgcacgc tgccatttgc gcttcatctc ttccgggact tccgcataac
     5341 cgtacccagg caagtcaacc agacgcttgc cgtcagccac ttcaaacagg ttgataagct
     5401 gggtgcgccc tggggttttt gaggtacgag ccaggctttt ctggttagtc agcgtgttca
     5461 gcgcgctgga tttacctgcg ttggaacggc ctgcaaaagc cacttcaatt ccggtatcgg
     5521 aaggtaggtg gcgaatatca ggcgcactca tcacaaaatg cgtctgttga taattcaaat
     5581 tagtcaaagc ggtcgtctcc gtcagtcaaa gctttgtggc gattatacct gaaccataat
     5641 aaaaggcgga tttttcggcg tgagcgttgt aagtaaaagc catacgcttt gtgagacatt
     5701 gccgatagtc tttatgcgaa atagcagaga aaattctgcg atgcatgtca aataagctat
     5761 ataaatcagt gaattgcttt tatataaaac tctgaaaatg tgcaaatact gatggcggtt
     5821 gattgtttgt ttaaagcgaa ggcgtaaagt agcacccata gagcgaggac gctaacagga
     5881 acaatgactc aggatgaggg tcaggagcgc caggaggcga agacagagga ttgtcaggaa
     5941 gacaaacgtc cggagacgta attaaacgga aatggaatca acacggattg ttccggctaa
     6001 aggaaaaaca gggtgtgttg gcggcctgca aggattgtaa gacccgttaa gggttatgag
     6061 tcaggaaaaa aggcgacaga gtaatctgtc gccttttttc tttgcttgct ttctgttaga
     6121 ttccgccgca aatcgatact gaataaaacg gctaaaagac gaaccattat gaaaccatca
     6181 tcttcaaact cacgcagcaa aggtcatgca aaagcgcgtc gaaaaacacg cgaggagctg
     6241 gatcaggaag ctcgtgatcg caagcgtcag aaaaaacgtc gtggtcatgc gccgggcagc
     6301 cgcgcagcgg gcggaaacac cacgtcaggc agcaaaggcc agaacgcacc aaaagatcca
     6361 cgtattggca gtaaaacccc tattccattg ggcgtgactg aaaaagtcac caaacagcac
     6421 aaaccgaaga gtgagaaacc tatgctttca ccgcaggcgg agttggaatt actggaaacg
     6481 gatgagcgtc tggatgcgct gctggaacgt ctggaagcag gcgaaaccct gagtgccgaa
     6541 gagcaatcct gggtggatgc taaactggat cgtattgatg agttgatgca gaaactcggc
     6601 ctctcttatg acgatgacga agaagaggaa gaagacgaga agcaagaaga catgatgcgt
     6661 ctgctgcggg gcaactaacg gattgccgcc gtgggccttc ccgttctgct gataaccctt
     6721 ccggttatat gttatctggt gtggttattc gttaaactac agcggttgtc gcggcgacaa
     6781 aagtggctgc gcaaccggct gatgacccga aacgggcatc cgccggtacg ccgtagccgc
     6841 cagagacgcc atcggaagga gtgagcatgt ctgtacagca aatcgactgg gatctggccc
     6901 tgatccagaa atataactat tccgggccac gatacacctc gtacccgacc gcgctggagt
     6961 tttcagaaga cttcggcgaa caggcgtttt tacaagccgt ggcgcgctat cctgagcgtc
     7021 cattatctct ctacgtacat atcccgttct gccataagct ttgttacttc tgcggttgca
     7081 ataagattgt tactcgccag cagcacaagg ccgatcagta tctggacgcg ctggagcaag
     7141 aaatcgtcca tcgtgcaccg ctgttcgccg ggcgtcacgt cagccaattg cactggggcg
     7201 gcggaacgcc gacgtatctg aataaagcgc aaatcagccg cctgatgaag ctgctgcgcg
     7261 aaaacttcca gttcaatgcc gatgcggaga tttcgatcga agtcgatccg cgggaaatcg
     7321 aactggatgt actcgatcat ttacgcgccg aaggctttaa tcgcctgagc atgggcgtgc
     7381 aggacttcaa caaagaagtg caacgtctgg ttaaccgcga gcaggatgaa gagttcatct
     7441 ttgcactgct taaccatgcg cgtgagattg gttttacctc caccaacatc gacctgattt
     7501 acggcctgcc gaaacagacg ccggagagtt tcgcctttac cctgaaacgt gtggcggagc
     7561 tgaaccccga tcgtctgagt gtctttaact acgcgcatct gccgaccatt tttgctgctc
     7621 agcgcaaaat caaagatgct gacctgccga gtccgcagca aaaactcgat atcctgcagg
     7681 aaaccatcgc cttcctgacg caatcgggct atcagtttat cggtatggat cactttgccc
     7741 gtccggatga cgagctggcg gtggcccagc gtgaaggcgt gctgcatcgt aacttccagg
     7801 gctacaccac tcagggcgat accgatctgc tggggatggg cgtttccgcc atcagcatga
     7861 ttggcgactg ctacgcgcag aaccagaaag agttgaagca gtactatcag caagtggatg
     7921 aacaaggcaa tgcgctgtgg cgtggtattg cgctaacgcg tgatgactgt attcgccgcg
     7981 atgtgattaa gtcgctcatc tgcaacttcc gtctggatta cgcccctatt gagaaacagt
     8041 gggatttgca cttcgctgat tactttgcgg aagatctcaa gctgctcgcc ccgttagcaa
     8101 aagatgggct ggtggatgtg gatgagaagg gaatacaggt gacggcgaaa ggtcgcttgc
     8161 tgatccgcaa catttgcatg tgctttgata cctatctgcg ccagaaagcg cggatgcagc
     8221 agttctcacg ggtgatttga atagtgaatg gcgcttcgtt tacaaagtag aaaacgaaag
     8281 cgccatcaat gtgctgagaa caagattgcc tgatgcgcta cgcttatcag gcctacaaaa
     8341 cctgttgaaa atattgcttt tgtaggccgg ataaggcgtt cacgccgcat ccggcatgaa
     8401 caaagagcac ttcatcagca atctgaaact caactaaaca gcccaatcat tgcggcacac
     8461 agcacggcag caacggcagt ttgcggtgtg tggctgtcaa ctgcgccact cgataccaga
     8521 ttaattattg attccagcat aatgactctc cccgttttcc gggcagatca tactgaactt
     8581 atcggaacag taaagcgtaa aataccagca atttgcgctc aataatcaat ctttacacac
     8641 aagctgtgaa tcactccatc cccagctctt ttaacttacg cgtcagggtg ttgcggcccc
     8701 agccgagtag ccgcgccgct tcctgtttat gcccctgcgt atgtcgcaac gcggtcgtca
     8761 gtaacgtccg ctccagctct ggctgcgctt cggaaagcag attttgatga ccggaacgca
     8821 gcgctctgtc tgcccactgc gcaagaagcg tcgcccagct gtccggttgc atttgcgaag
     8881 tactctccgc aaccgttgat tcaaacagtt cgccgggcaa atcctgaatc aacacttcct
     8941 gcccggcggc catcaccgtt agccagcggc aggtgttttc cagctggcgc acgttgcctg
     9001 gccacgccag acgcgtcaga gcagcttcgg tttccggatg cagtaacttc gcttctacgc
     9061 ccagttcgcg cgcggcaacc tgtaaaaaat ggcgcgccag acggggaata tcttcccgac
     9121 gttcgcgcag cggcggtaga tgaacgcgga taacgtttag gcggtggaac agatcctcac
     9181 ggaacttacc ttcctgcact cgctgttcga gattctggtg agtggcagcg ataatccgca
     9241 catccacttt caccggcgca tagccgccaa cgcggtaaaa ctgaccgtct gccagcacgc
     9301 gcagcaaacg cgtctgcaca tccagcggca tatcaccaat ttcgtcgagg aataatgtac
     9361 cgccatcggc ctgttcaaaa cgcccctgac gaatggtatt cgcgccagta aacgcgcctt
     9421 tctcgtggcc aaacagttct gattcgatca aatcttttgg gatagctgcc atattcagcg
     9481 cgataaacgg tgctttggcg cgcggactgt ggcgatgcag ggcatgagcg accagttctt
     9541 taccggtgcc ggattcgccg ttaatcagca cgctaataga agaacgcgaa agccgaccga
     9601 taatacggaa cacgtcctgc atggctggcg cttcgccgat gatatcggtc gttgggccgt
     9661 taagctgaat attacgcggc tgctgctgtt cctggtaatg actgatagcg cgctcaacca
     9721 gcgccacggc ttcgtcgata tcaaacggtt tgggcagata atcaaacgcc ccttgttgat
     9781 aggcgctgac ggcagcatcc agatcggaat gtgcggtcat aatgatgacc ggaagcattg
     9841 gatggcgctg tttaatctgc ttgagcagcg ccagcccgtc cattcccggc atacggatat
     9901 ctgaaagcag cacatccggc gttttgctcg ccagcgcctc cagtacttcc gcgccgttct
     9961 caaatgtcgt acaggttaaa cccgctccag cgagcgcacg ttcaagcacc caacggatgg
    10021 aactatcgtc atcgactacc cagactatcc ctcgttgcat aaacgtcacc tttatttcct
    10081 gataggcagg taaaccgaga actcggtatg acctggccaa ctggtaaatt caattttgcc
    10141 tgaatgctga tcaatcaaat tacgggcgat ggataagcca agcccggtgc caccttcgcg
    10201 gccgctgacc atcgggtaaa acagcgtatc ctgcaaatga ggcggaatgc ccggcccgtt
    10261 atcttccaca tcaatccgcg ccgccagccg gtagcgctcg ccgtgtaagg tcagttgaaa
    10321 cgcggtgcgg gtacgcagaa tgatttcacc gccttccggc cccagcgcct gtagcgcatt
    10381 gcgcacaata ttcagcaaga cctgttcaat ttgatccggg tcgtgcgcca gttccggcag
    10441 gctgggatcg taatcacgaa tcaaccgcac gttgtccggc agttccatcg acaccagcgt
    10501 taccacgcgt tcagccactt tgtgaatact ttcggtaacg cgcgtaccgg gcagctgcgg
    10561 ccccaacaga cggtcgacca gatttcgcag ccggtccgcc tgttcgataa tcactttggt
    10621 atattcgagt agtgatgggt caggtaacgc tttgctgagc agctgcgccg cgccacgtaa
    10681 accgccaagc ggatttttaa tctcatgtgc caggccgcgc actaaatcac gggcagcaac
    10741 ctgctgggcg tgctgtagct gttcctgact taagcggcgc tggttatcca tcggagccat
    10801 ctccagcagg atcatgccgt ccggcatacg ctgggccgtc acagaaagga tatgcgagcg
    10861 cccgtcgatg accagcgtca cttcgttatc ggtaaaacct tgccccgcct ccagactttc
    10921 ttgcatcagc tcgatattta atgagaagta gctcaacagt tccggtaacg gtgtaccaaa
    10981 caatttgcgg gagctttggg cgagcagttg ttgcgcggca gggttggcgt aatggatctc
    11041 caggttgtca tcgattaaca aaatactgtt aatcagcgag ttgaggatct gcccagcatc
    11101 gggctgcgtg cctgttgcca taaagcagtc tcctgaacag gttgcaccat tttagtgcat
    11161 tatagctttt tacggataaa aagcgcgaag catcagagaa ttgacggaga aaaaagccca
    11221 tgcagagatg ggctgaaagt ttccacggca actaaatccc ggcgttgttg cgccgggtag
    11281 tacaacttca actattagac gctgtagtac agctcaaact ctaccggatg cggagtcata
    11341 cgcacgcggt catcttcttc gcgacgcaga gcgatgtacg catcaattgc ttcgtcagtg
    11401 aacacgccac cggctttcag gaactcgcgg tccagatcca gttcgttcag tgcttcttcc
    11461 agagagcctg caacctgtgg gatctctttc gcttcttctg gcggcaggtc atacaggttt
    11521 ttgtccatgg cttcacccgg atggatcttg ttcttgatac catcaagacc ggccatcagc
    11581 agggcagcaa agcacaggta cgggttagct gccggatccg ggaaacgtac ttcgatacga
    11641 cgtgctttcg gagaagaaac caccggaata cggatagacg cagaacggtt acgcgcagag
    11701 taagccagca ttaccggtgc ttcatagccc gggaccagac gcttataaga gttggtggtc
    11761 gggtttgcca gggcgttaat cgctttagcg tgtttgatta cgccgccaat gtagtacagc
    11821 gcctgctcag acagacctgc gtatttgtcg cctgcgaaca ggttaacgcc gtttttagac
    11881 agagacatgt ggcagtgcat accggagccg ttatcaccga acatcggttt tggcataaag
    11941 gtcgcggttt taccgaagcg gtgcgctacg ttgtgcacaa catatttgta gatctgaatt
    12001 tcgtcagctt ttttggtcat ggtattgaag cgggtagcca cttcgttctg accagcagtc
    12061 gctacttcgt ggtgatgggc ttcaaccacc agccccatct gttccatcac cagacacatt
    12121 tcagaacgaa tatcctgagc cgagtctacc ggtggaaccg ggaagtaacc gcctttcact
    12181 gccggacggt gacctttgtt accaccttcg tattgggtgg aggagttcca tgcgccttcg
    12241 atatcgtcga tagcaacgtg ggaaccggag atagatgatc cgaaacggat gtcatcgaac
    12301 aggaagaatt caggttctgg cccgaacagt acggtgtcgg caatgccagt ggaacgcagg
    12361 taatcttcgg cgcgcttcgc aatggagcgc gggtcacggt catagccttg cagggtgcca
    12421 ggttcaagga tgtcgcaacg gataatcagg gtggagtcgg cgaagaacgg gtcaatcact
    12481 gcggtggatg cgtctggcat cagcaccatg tcggactcgt taatgccttt ccagccgcca
    12541 atcgaggagc cgtcaaacat tttgccttct tcgaagaatt cagcattcac ctgatgagca
    12601 gggatagtga cgtgctgttc tttaccttta gtatcggtga agcgcaaatc aacaaacttc
    12661 acttcgtgct cgttcagcat cgtcagtacg tgttcagcgg acatacttta actctcctgg
    12721 attggtcatg gtcgtcgtgg taacgaaatc tgcaattatt ttggccgtgt cgccgtaaaa
    12781 aagataaagc gaaatctgtg ccaactttta aattgcccct aaaaggcgtt atcatgcgca
    12841 ccatcgtgca aaagggctgc accacgatgt gaatgttgca ccaatatagt gcttcaatgg
    12901 aaacattaag caccatgttg gtgcaatgac ctttggataa ccctttttat gctccgtgaa
    12961 agcgatcaca aagggactct gcaatacttg tttgcggagg atgtttgtga tcctgttttg
    13021 tagtgcgatt aatccgtgta caataacgcg ctatttctaa tgcctgaggc aaagttgtga
    13081 tcgaaaaatt gcgtaatatc gccatcatcg cgcacgtaga ccatggtaaa accaccctgg
    13141 tagacaagct gctccaacaa tccggtacgt tcgactctcg tgccgaaacc caagagcgcg
    13201 tgatggactc caacgatttg gagaaagagc gtgggattac catcctcgcg aaaaacaccg
    13261 ctatcaaatg gaatgattac cgtatcaaca tcgttgatac cccggggcac gccgacttcg
    13321 gtggtgaagt tgaacgtgta atgtccatgg tagactcagt gctgctggtg gttgacgcat
    13381 ttgacggccc gatgccgcaa acgcgcttcg taaccaaaaa agcgtttgct tacggcctga
    13441 agccgattgt tgttatcaac aaagttgacc gccctggcgc gcgtcctgat tgggttgtgg
    13501 atcaggtatt cgatctgttc gttaacctcg acgcgaccga cgagcagctg gacttcccga
    13561 tcgtttacgc ttctgcgctg aacggtatcg cgggtctgga ccacgaagat atggcggaag
    13621 acatgacccc gctgtaccag gcgattgttg accacgttcc tgcgccggac gttgaccttg
    13681 acggtccgtt ccagatgcag atttctcagc tcgattacaa cagctatgtt ggcgttatcg
    13741 gcattggccg catcaagcgc ggtaaagtga agccgaacca gcaggtcact atcatcgata
    13801 gcgaaggcaa aacccgcaac gcgaaagtcg gtaaagtgct gggccacctc ggtctggaac
    13861 gtatcgaaac cgacctggcg gaagctggcg atatcgttgc gatcacgggc cttggcgaac
    13921 tgaacatttc tgacaccgtt tgcgacacgc aaaacgttga agcgctgccg gcactctccg
    13981 ttgatgagcc gaccgtttct atgttcttct gcgttaacac ctcgccgttc tgcggtaaag
    14041 aaggtaagtt cgtaacgtct cgtcagatcc tggatcgtct gaacaaagaa ctggtacaca
    14101 acgttgcgct gcgcgtagaa gaaaccgaag acgctgatgc gttccgcgtt tctggtcgtg
    14161 gcgaactaca cctgtctgtt ctgatcgaaa acatgcgtcg tgaaggtttc gaactggcgg
    14221 tatcccgtcc gaaagttatc ttccgtgaaa tcgacggtcg taaacaagag ccatatgaaa
    14281 acgtgactct ggacgttgaa gaacagcatc agggttctgt aatgcaggcg ctgggcgaac
    14341 gtaaaggcga cctgaaaaac atgaatccag acggtaaagg ccgcgtacgt ctcgactacg
    14401 tgatcccaag ccgtggtctg attggcttcc gttctgagtt catgaccatg acttccggta
    14461 ctggtctgct gtactccacc ttcagccact acgacgacgt acgtccgggt gaagtgggtc
    14521 agcgtcagaa cggcgtactg atctctaacg gtcagggtaa agcggtcgcg ttcgcgctgt
    14581 tcggtctgca ggatcgcggt aagctgttcc tcggtcacgg tgcagaagtt tacgaaggtc
    14641 agattatcgg tattcatagc cgctctaacg acctgactgt aaactgcctg accggtaaga
    14701 aactgaccaa catgcgtgct tccggtactg acgaagccgt tgttctggtt ccgcctatcc
    14761 gcatgactct ggaacaagct ctggagttca tcgatgatga cgaactggta gaagtgactc
    14821 cgacctctat ccgtattcgt aaacgtcacc tgacggaaaa cgatcgtcgt cgcgccaacc
    14881 gcgcaccgaa agactattaa tttcgttttt tagttataaa aaacctgcca tcgctg
//
LOCUS       DAJVUY010000101        14633 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.101, whole genome shotgun sequence.
ACCESSION   DAJVUY010000101 DAJVUY010000000
VERSION     DAJVUY010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14633
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.101"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            369..788
                     /locus_tag="OQQ72_002755"
     CDS             369..788
                     /locus_tag="OQQ72_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS2012422.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            788..2055
                     /gene="umuC"
                     /locus_tag="OQQ72_002756"
                     /pseudo
     CDS             788..2055
                     /gene="umuC"
                     /locus_tag="OQQ72_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase V catalytic protein"
     gene            complement(2101..2631)
                     /gene="dsbB"
                     /locus_tag="OQQ72_002757"
     CDS             complement(2101..2631)
                     /gene="dsbB"
                     /locus_tag="OQQ72_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HCS2012423.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(2777..4318)
                     /gene="nhaB"
                     /locus_tag="OQQ72_002758"
     CDS             complement(2777..4318)
                     /gene="nhaB"
                     /locus_tag="OQQ72_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HCS2012424.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4540..5259
                     /gene="fadR"
                     /locus_tag="OQQ72_002759"
     CDS             4540..5259
                     /gene="fadR"
                     /locus_tag="OQQ72_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HCS2012425.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5311..6843)
                     /locus_tag="OQQ72_002760"
     CDS             complement(5311..6843)
                     /locus_tag="OQQ72_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HCS2012426.1"
                     /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
                     EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR
                     GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMG
                     NL"
     gene            7173..8471
                     /gene="dadA"
                     /locus_tag="OQQ72_002761"
     CDS             7173..8471
                     /gene="dadA"
                     /locus_tag="OQQ72_002761"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HCS2012427.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8481..9540
                     /gene="dadX"
                     /locus_tag="OQQ72_002762"
                     /pseudo
     CDS             8481..9540
                     /gene="dadX"
                     /locus_tag="OQQ72_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309712.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
     gene            complement(9927..11663)
                     /locus_tag="OQQ72_002763"
     CDS             complement(9927..11663)
                     /locus_tag="OQQ72_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HCS2012428.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGTAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(11758..12672)
                     /gene="ldcA"
                     /locus_tag="OQQ72_002764"
     CDS             complement(11758..12672)
                     /gene="ldcA"
                     /locus_tag="OQQ72_002764"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HCS2012429.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVANFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVSAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            12772..13383
                     /gene="emtA"
                     /locus_tag="OQQ72_002765"
     CDS             12772..13383
                     /gene="emtA"
                     /locus_tag="OQQ72_002765"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HCS2012430.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13385..14119)
                     /locus_tag="OQQ72_002766"
     CDS             complement(13385..14119)
                     /locus_tag="OQQ72_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
                     /protein_id="HCS2012431.1"
                     /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL
                     AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT
                     VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP
                     AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP
                     TVERQLQRIIFSLEREAREKADKVRD"
     gene            14320..14574
                     /locus_tag="OQQ72_002767"
     CDS             14320..14574
                     /locus_tag="OQQ72_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS2012432.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAILVLGLFRLLRRE"
BASE COUNT         3723 a         3644 c         3820 g         3446 t
ORIGIN      
        1 attcgcctct ttaaatatat aaattgtaat gaaactcctg ttttacaact attaataaat
       61 tttacttcat ctaattcata gttagccggg tgggatgcgt caatgtcttt atttctatta
      121 atatgataaa tatcaaacaa tgtttaatgt cattatggcg aatgcttcta ttctattttt
      181 ttgccgggtg atatttttca tttctgctgg atgagcgtcg tcgccagaag gccacgtgag
      241 cacaggataa gagaacgaaa aatcagcagt ctatacagcg acaaatattg atagcctgaa
      301 tcagtattga tctgctggca agaatagact actgtatata aaaacagtat aacttcaggc
      361 agattattat gttgtttatc aagcctgcgg atctccgcga aattgtgact tttccgctat
      421 ttagcgatct tgttcagtgt ggctttcctt caccggcagc agattacgtc gaacagcgca
      481 tcgatctgaa tcaactgttg atccagcatc ccagcgcgac ttacttcgtc aaagcaagtg
      541 gtgattctat gattgatggt ggaattagtg acggtgattt actgattgtc gatagcgcta
      601 ttaccgccag ccatggtgat attgtcatcg ctgctgttga cggcgagttt acggtgaaaa
      661 aattgcaact acgcccgacg gtacagctta ttcccatgaa cagtgcgtac tcgcccatta
      721 ccatcagtag cgaagatacg ctggatgtct ttggtgtggt gatccacgtc gttaaggcga
      781 tgcgctgatg tttgctctct gtgatgtaaa cgcgttttat gccagctgtg agacggtgtt
      841 tcgccctgat ttatggggta aaccggtggt tgtactatcg aataatgacg gttgcgttat
      901 cgcccgaaac gctgaggcaa aggcgctggg tgttaaaatg ggcgatccct ggttcaaaca
      961 aaaagatctg tttcgtcgct gtggtgtggt ttgctttagc agcaattatg agctttacgc
     1021 agacatgagc aatcgggtta tgtcgacgct ggaagaacta tcgccccgcg tcgagattta
     1081 cagtattgat gaggcattct gcgatctgac aggtgtgcgt aattgtcgcg atctgactga
     1141 ttttggcaga gaaattcgcg caacggtgct acaacgtacc catcttactg ttggtgtggg
     1201 gatcgcccag accaaaacgc tggctaagct tgccaatcat gcggcaaaaa aatggcagcg
     1261 gcagacgggg gggtggtgga tttatcaaat ctggaacgcc agcgtaaatt aatgtctgct
     1321 ctccccgtgg atgacgtctg ggggattgga cggcggatca gcaaaaaact ggacgcgatg
     1381 gggatcaaaa ccgttcttga tttggcggat acagatatcc ggtttatccg taaacatttt
     1441 aatgtcgtgc tcgaaagaac ggtgcgtgaa ctgcgcggtg aaccctgttt gcaactggaa
     1501 gaatttgcac cgacaaagca ggaaattatc tgttcccgct cgtttggtga acgtatcacg
     1561 gattatacgt cgatgcggca ggccatttgt agttacgctg cccgggcggc ggaaaaactt
     1621 cgcagtgagc atcaatattg tcggtttatc tccacattta ttaagacgtc accatttgcg
     1681 ctcaatgaac cttattacgg caatagcgcg tcggtaaaac tgctgacgcc cactcaggac
     1741 agcagggata tcattaacgc cgctacgcga tctctggatg ccatctggca agcgggccat
     1801 cgctaccaaa aagcgggcgt gatgctgggg gatttcttca gtcagggagt cgcgcagctc
     1861 aatttattcg atgacaacgc accgcgcccc gggagtgagc aattgatgac ggtaatggat
     1921 acactgaatg ctaaagaggg cagaggaaca ctctattttg ccgggcaggg gatccaacaa
     1981 caatggcaga tgaagcgagc catgctttca ccacgttata caacgcgaag ttctgattta
     2041 ctgcgggtca aataaatata gcggcaggaa aaaagtgctc ccgcaggagc gccgaatgga
     2101 ttagcgaccg aacagatcac gttttttcgc tttaaacggc tgggaaatca tcaccagcac
     2161 cgcgacaatc aggtaagcga taaaaatacc gagcagccac tgcggcattt ccagacctaa
     2221 aaaatcccac tgacgctcgg cgcaatcgcc agaggcgaca aacacttgcg gcacccattt
     2281 atccagcggc agccattccg ggaaacgaac cataaaatca caggtggcaa acggcgaagg
     2341 atagagctga agcatggtgt gctcgtaagt taactgcaca ccgcggaacg cactatacaa
     2401 ccagataacc atcgctacat aacgcagcgg agttttcggg gcgatcgcgc caatcagcgc
     2461 agcacccaga acgccgaata acgcgcagcg ttcataaata cagagcacgc aaggtttcag
     2521 taacatcaca tgctggaacc acagcgccgt cagttccagt gccagagcag taaacgccat
     2581 caacagccac gcgccccggc cttgtgaaca ttggttcaaa aatcgcaaca taatcatttc
     2641 cctgcaatat gcatagagtg cgcagtttaa accaattcat tcgctgcgcc accaggaggc
     2701 agcaaaaata ggacgcaatt ggacaattat cgggcgaaaa ggcaaaccgg gcatttatat
     2761 gcccggtaag ttgttatcaa agcgttgcta tccagcccat ttgcataaac cattcggtta
     2821 caggggcaag cgtaaactcg acgcagagca gcccgacgag tgtcaggacg agggtgtaag
     2881 gcagggccat ccacaccatg cggccataag agaggcgaat caatggcgcg agtgcagagg
     2941 tcagcaggaa caggaacgca gcctgaccgt tcggcgtagc gacagagggc agattggtac
     3001 cggtattaat ggcgaccgcc agcagctcgt attgcttcaa cgtgatagcg ccactttcca
     3061 ttgccgcttt cgcttcgttg atataaatcg tccccacgaa gacgttatcc gaaatggatg
     3121 acagcagacc gttgaaaata tagaacaacg acagctgagc atgttccgat gcctgcaaca
     3181 caaactgaat aatcggcgaa aacagttgtt ggtcgataat caccgcgact accgagaaaa
     3241 acaccgtcaa cagtgcggtg aatggcagag attcggtgaa ggctttaccg atagcatgtt
     3301 catcggtgac accggtcaat gatgtcgcca gaataatgac cgacaaacca atcaagccaa
     3361 cctccgccag atgcaacgcc agcgcagtca ccagccagac gccgataatc gcctggacaa
     3421 tcagacggat tttatcctga cgggtacgct ggtggcggct ttgatcgtca aactgttgca
     3481 acacttcgcg gactttctcc ggcagcgttt caccgtagcc aaaccaacgc agcttctcta
     3541 ccagcaggca ggttaacagg ccacaaatca gaaccggaac ggtcaccggc gacatgcgca
     3601 ggaagaaatc gccaaaatgc cagccagccg ctttagcgat gatcaggttc tgtggttcgc
     3661 ccaccatggt cattacgccg cctaatgcgg tgccgacacc ggcatgcatc atcaggctac
     3721 gcagaaagcc acggaactgt tccagaacca ctttgtaatg cttgtcgata tgactatcgt
     3781 cttgcaggtc ggtatcttca gtacgggaag aggctacgcg gtgataaata ccataaaaac
     3841 cgactgcaac gctgatcacc accgccacga cggttaaggc atcgaggaac gcggagagga
     3901 acgccgccgc cacgcaaaaa gagagcgaca gcagcatttt ggaacgaatg cttaacagca
     3961 aacgggtaaa tatgaacagc aatagctgtt tcataaaata gatacccgcc accataaaca
     4021 tcagtaacag caagacttca agatttgccg ccacctcttc acggacgtgt tccgcgctgg
     4081 tcatgccgat gaataccgct tcaatagcca acagaccacc ggggagtagc gggtagcatt
     4141 tcagggccat cgccagagtg aaaataaatt ccgctaccag caaccagcca gcgacgaaag
     4201 ggctgatgag gaaaattaac ggatttacga ttaagaaaat gatgagggcg agtttgtacc
     4261 agtcggggga ctggcccaaa aaattgcgcc atagcgcgcg gccccaggag atctccatga
     4321 tggtttccct taccttacaa ataatcaatg atgtttttat gtttaaacgc aaagcttaac
     4381 ggtcaggcag gagtgaggca agtcttgata gtcaagggga aagagatgcg gaaaatgaag
     4441 ccttgatccc ttttttcttc tttttgtctg ctatcagcgt agttagccct ctggtatgat
     4501 gagtccaact ttgttttgct gtgttatgga aatctcacta tggtcattaa ggcgcaaagc
     4561 ccggcgggtt tcgcggaaga gtacattatt gaaagtatct ggaataaccg cttccctccc
     4621 gggactattt tgcccgcaga acgtgaactt tcagaattaa ttggcgtaac gcgtactacg
     4681 ttacgtgaag tgttacagcg tctggcacga gatggctggt tgaccattca acatggcaag
     4741 ccgacgaagg tgaataattt ctgggaaacc tctggtttaa atatccttga aacactggcg
     4801 cgactggatc acgaaagtgt gccgcagctt attgataatt tgctgtcggt gcgtaccaat
     4861 atttccacta tttttattcg caccgcgttt cgtcagcatc ccgataaagc gcaggaagtg
     4921 ctggctaccg ctaatgaagt ggccgatcac gccgatgcct ttgccgagct ggattacaac
     4981 atattccgcg gcctggcgtt tgcttccggc aacccgattt acggtctgat ccttaacggg
     5041 atgaaagggc tgtatacgcg cattggtcgt cactatttcg ccaatccgga agcgcgcagt
     5101 ctggcgctgg gcttctacca caaactgtcg gcgttgtgca gtgaaggcgc gcacgatcag
     5161 gtgtacgaaa cagtgcgtcg ctatgggcat gagagtggcg agatttggca ccggatgcag
     5221 aaaaatctgc cgggtgattt agccattcag gggcgataat cccttccgtt taaaaagcaa
     5281 acccctcaaa cgaggggttt tttgttgttt ttacagattt cccattcttg gcgggcaacg
     5341 ttccagcaac tcgacgctgc catcttcgtt ttgctgttcc agcatcacat caaatcccca
     5401 caggcgatgc acatgcttca gcacttcttt gcgcccccga tccagcggtg cgcgattatg
     5461 tggaatgtaa cgcagcgtca gcgaacggtc gccgcgcaaa tccacgttcc agatctgaat
     5521 attcggctcc agattactta agttatattg cgacgataac cggttacgga tctcccgata
     5581 accttcttca ttatgaatag cggaaatctc cagataatta tgccgatcgt catccagcac
     5641 ggtgaagaag cggaaatcac gcatcacttt cggtgacaga aactggctga taaaactctc
     5701 atctttgaaa tcacgcatcg cgaaatgcag cgtttccagc cagtcggaac cggcgatatc
     5761 cgggaaccag tatttgtctt cttccgttgg cgactgacaa atccgtttaa tatcctggaa
     5821 catggcgaac ccgagggcat acgggttgat gccgctgtac cacgggctgt tatagggggg
     5881 ctggaagacc acattggtgt ggctgtgcaa aaactccagc ataaaacgtt ccgttacttt
     5941 cccttcatca tacagatggt taaggatggt gtagtgccag aaggtggccc agccttcgtt
     6001 catcacctga gtctgttttt gcggataaaa atactggctc accttacgca caatacgcag
     6061 gatttcacgc tgccatgatt ccagcagtgg cgcatttttc tccataaaat agagcaggtt
     6121 ttcttgtggt tcggacggat agcggcgcgc ttcagcaacc gttttctctt cctcgcgctt
     6181 cggcagggta cgccagagca tattgacctg actttgtaga tactcttcgc gacttttctg
     6241 ccgggctttc tcttcttgca gcgagatttt ttgcgggcgt ttgtaccggt ccacgccgta
     6301 gttcatcagc gcgtggcacg agtccagaag ccgttctact tcatccacgc cataacgttc
     6361 ttcgcactcg gtaatatatt tacgggcaaa aatcagataa tcgacaatcg aactggcgtc
     6421 ggtccaactg cggaataagt aattgttttt aaagaaagag ttatgcccat agcaggcgtg
     6481 tgccatcacc agcgcttgca tggtaatggt gttctcttcc atcaggtaag cgatacacgg
     6541 gttagagtta atgacgattt cataggccag tccttgctga ccgtgcttat acagccgttc
     6601 agtctcgata aactttttac cgaatgacca gtgcggatag ttaattggca tgccgacgct
     6661 ggagtaggca tccatcatct gttctgaggt tatcacttca atctggtgcg ggtaggtatc
     6721 cagccggtag agtttcgcca cccggtctat ctctgccaga taaacatcca gcaggtcgaa
     6781 cgtccagtcg ggtccatcgc tcaaccgtgt ggtgtcctta ttcatagaat cgatcgtcgc
     6841 catacgcgca cctcattgtt gtcggcgctc tctgtgtgga gcacctcatt tcaagcatag
     6901 aacacctgtt aaaaaccgcg tcgccggaga atttttttct ttgcgatttc ttattatcag
     6961 agtgccacta atccgcttct gaacggaatt ttatgctgga taaaaagggc gttcagcagg
     7021 agatactaaa gacgccatat tgccgcagag tcagggagat gtgagccagc tcaccataaa
     7081 aaagctgtat gttgaataat attttcaact gagttatcaa gatgtaatta gattattatt
     7141 cttttactgt atctaccgtt atcggagtgg ctatgcgagt tgtcatactg ggaagtggtg
     7201 tggtaggcgt tgccagcgcc tggtacttaa atcaggcagg acatgaggtc accgtcattg
     7261 atcgggagcc gggggccgcc ctggaaacca gcgccgcgaa tgccgggcaa atctcccccg
     7321 gatatgctgc accgtgggcg gcaccaggtg tgcctttaaa agcgatcaaa tggatgttcc
     7381 agcgccatgc gccgctggcg gttcgtctcg acggtacgca gtttcagttg aaatggatgt
     7441 ggcaaatgtt acgtaactgc gacaccagcc actacatgga aaacaaaggg cggatggtgc
     7501 gtctggcgga atacagccgt gattgcctga aagcattgcg cgccgaaacc aatattcagt
     7561 atgaagggcg tcagggtggg acgctgcaac tgttccgtac cgaacaacag tatgaaaatg
     7621 cgacccgcga tatcgccgtg ctggaagatg ccggcgtacc gtatcagctg ctggaatcca
     7681 gccgcctggc ggaagtggag ccagcgctgg cagaagtagc gcacaaactg acgggtggtc
     7741 tgcaactgcc caatgatgaa accggagact gccagctgtt tacccagaat ctggcgcgga
     7801 tggcagagca ggcgggggtt aaattccgct ttaatacgcc cgttgaccaa ctgctttgcg
     7861 acggcgagca aatctacggc gtgaagtgtg gcgatgaagt gattaaggcc gatgcgtatg
     7921 tgatggcgtt tggttcttac tcgacggcga tgctcaaagg cattgttgat attccggtgt
     7981 atccgctgaa aggctactcg ctgactattc caattgcgca ggaagatggt gcgccagtat
     8041 ccaccattct tgatgaaacc tacaaaatcg ccattacccg tttcgataac cgcattcgtg
     8101 ttggcggaat ggcggaaatt gttggtttta acaccgagct gttgcaaccg cgtcgtgaaa
     8161 cgctggaaat ggtggttcgc gatctctatc cacgcggcgg tcatgtcgag caggcgactt
     8221 tctggacggg tttgcgcccg atgacgccag acggtacgcc ggttgtcggg cgtacacgct
     8281 ttaaaaatct gtggctgaat accggtcacg gcacgctcgg ctggacgatg gcttgcggtt
     8341 ccggtcagtt gttaagcgat ctgctctctg gtcgcacgcc agcgatccca tatgaggatc
     8401 taagcgtagc gcgctacagc cgtggattta cgccatcacg tccgggccat ttacatggcg
     8461 cacacagcta aggaaacgag atgacccgtc cgatacaggc cagcctcgat ctgcaggcat
     8521 taaaacagaa tctgtccatt gtccgccagg ccgcgccgca cgcgggtggt aaaagcgaac
     8581 gcttacgggc atggtattga gcgtatctgg agcgcgctcg gggccaccga tggctttgca
     8641 ttacttaacc tggaagaggc aataacgtta cgtgagcgcg gctggaaggg gccgatcctg
     8701 atgctggaag gatttttcca tgctcaggat ctggagattt atgaccagca ccgcctgacc
     8761 acctgcgtac acagcaactg gcagctcaaa gcactgcaaa atgcgcggct aaaagcaccg
     8821 ttggatattt atcttaaagt gaacagtggg atgaatcggt tgggcttcca gcccgatcgc
     8881 gtgcttaccg tctggcagca gttgcgggca atggcgaatg ttggcgagat gatcctgatg
     8941 tcgcattttg ccgaagcgga acatcctgat ggaatttcca gcgcgatggc gcgtattgag
     9001 caggcggcgg aagggctgga gtgtcggcgt tcgttgtcca attcggcggc gactctgtgg
     9061 cacccggaag cgcattttga ctgggttcgg cctggcatta ttttgtatgg cgcttcgccg
     9121 tccggtcagt ggcgtgatat cgccaatacc ggattacgtc cggtgatgac gctaagcagt
     9181 gagattattg gtgtccagac gctaaaagcg ggtgagcgtg tgggctacgg cggtcgctat
     9241 actgcgcgcg atgaacagcg aatcggcatt gtcgccgcag ggtacgccga cggttatccg
     9301 cgccacgcgc ctaccggtac ccctgtttta gtggacggcg tgcgcaccat gacggtgggg
     9361 accgtctcga tggatatgct ggcggtcgat ttaacgcctt gcccgcaggc gggtattggt
     9421 acgccggttg agctgtgggg caaggagatc aaaattgatg atgtcgccgc cgctgccgga
     9481 acggtgggct atgagttgat gtgcgcgctg gcgctacgcg tcccggttgt gacggtgtaa
     9541 cttgttgtaa gccggatcgg aggcaacgtc ttctgggtgc aaaaaaaatc atccatccgg
     9601 ctggtcagca actgtagttg ttaatgtgac agagccattg cccatgatag tgtccattaa
     9661 aaggatggac actatttccc cggaacctga actcaccgca caggcgttct acataaaacg
     9721 cttacgcttc attgttgact cggagtcgac ttcagataaa tcacgcttta cccttgatgg
     9781 agcctgtaca tagatttgtg taattgcctg attttgatat gttcaattca acatcaaatg
     9841 aaggttaaat tatggacgac aaacaattgc aggctcaggc tgcgttcagc aaagcatcgc
     9901 aaccggcgat agatgcttca ttaaatttaa gattcagctt cctcttcagc cacccgtacg
     9961 ccaatcttca acacttcatt atcttctttc tcggccaccg tccagatcat cccggcaaac
    10021 tctacctggt caccgacaac cggtgccgtg cctaacaact gctggacaat ttcacccagc
    10081 gtttgctgct tatcacgata ttctcgcccg tcttccaggc catatatcag cgcaacatca
    10141 gcatatttgg cgctggcttc gagaatgaag tcaccaaaga agcgttgatc cagcgcgacc
    10201 ggcggcgact ggctgaacag tttaccgagc gccggaagat cgcgttcccg accaattaca
    10261 cacaacacat cgccttcgcg cagtcgggtg ctgccggtag gatgaagcaa ctggttatca
    10321 cgaaacagtg ccgcaatacg cgtctctttt ggcatatgca aatcgcgcag tgccgcgccc
    10381 acgcaccatt tatcggcact caattgataa acaaactgct cccacggatt ttccggatga
    10441 atatccaggc caacgcgtga caccggacgt cccactggcg gaaccaccac tttggctttt
    10501 ttagccgccc acgagagtga tgttccctgc aagagcagtg aaaccagaac cacaaagaag
    10561 gcgacattaa agaacagacg tgcattctcc agccccgcca tcatcgggaa cacggccagg
    10621 atgattggca ccgcgccgcg taatcctacc cagctgataa acacgcgctc acgcagattg
    10681 aaaccgcgga aggggagcaa tccagcaaat accgaaaggg gacgggcgaa gaatatcatc
    10741 catgccgaca aaattagcgc cggaatggca ataggcagca gatcgcttgg gttaaccaat
    10801 agccccagca ccaggaacat ggcgatttgc gccagccagg cgaggccgtc gaaattttgc
    10861 aggatgccgt agcggttgcg aatcggccga ttacccagca gaaaaccgca cagataaaca
    10921 gccagaatac cgctgccttc cagcgccgtg gttaaagcaa aaattaaaat accgccgctt
    10981 aatgccagca atggatataa tccggcaggc agggcgatgc gattaatcat ttgcagcagt
    11041 aaataaccac cgccaagtcc gatgacaatc ccgaggccaa attgctgcag aatatcgacc
    11101 acgaacatcc aactgacact gctttcatgt tgctggatca tcgcaatcag ggtaatcgtc
    11161 agaaagaccg ccattggatc attactgccg gattcaattt ccagcgtcga gccaacacgt
    11221 tcgttaagcc ccttaccacc cagcagagaa aagaccgctg cagcatcggt agagccgacg
    11281 atagcgccga ttaataagcc ttcaatcaaa tcaagattaa acagccacgc cgccatcatg
    11341 ccggttaaac cagaggtgat aagcacgccc agcgtcgcca gcgacagtgc cggtcctaac
    11401 gccacacgaa aggaactggc ctgagtgcgc atcccgccgt cgagcaaaat aatcgccagt
    11461 gccaggttac ttaccatgta ggcgaagggg taattatcaa acgggatacc gccgacgcca
    11521 tcgactcctg ccagcatgcc gatcgccaga aaaataacca gaataggaat gccaagacgg
    11581 gaagaaaatg aactaagtaa tatactgctg gtgacaagga tggatcctaa gatgaaaagg
    11641 ctaattattg ttgtggcatc caacggtcgg ttactcctga ttacgctgtc tcttatataa
    11701 accctaccat attagcggca gagacagcgt tttacttagc cctgaagcgt gattttttta
    11761 cattttaaga acaggatgac cgctaatcgt caactgagtg ccttcccggg tgttattcag
    11821 aatggcatgt gcgcccaacg gcagcgtaac cgtgcgttgt tcatgaccaa aatcgaggcc
    11881 ggtaatgagt ggaatcgaca ggcgggaacg caaaaacgcg gacactgact ccaggttgta
    11941 acctgcgtca taatcattgg gcgtgctgcc gctaaagcta ccgagaataa tcgccttctg
    12001 acgtggcaaa attcccgcat gatagagctg caacagcata cgttcgacgc ggaaagggtg
    12061 ctcgttaata tcttccagta ccaggatacc gttctcaatt tttggcatcc acggtgtacc
    12121 aatcagtgaa atcagcatcg caagattgcc tccccacaac gtgccttcgg tctgacatgt
    12181 cgggccttcc ccttgccatt caatggtgaa ggttttattg cgtaacgcca gccagaaatg
    12241 gtgctcggta aaggcgttca gttcatccgc accaaagttt gctaccagca tggggccgct
    12301 aaaggtgatg acattgcctt gcgccagaag accgcactga atggcggtaa aatcgctatg
    12361 tccgcaaatg agtaacgggt catgttgttg gcgagccacc agtgcctgcc agtcaatatc
    12421 tgccagtaaa cgactggcac cgtaaccgcc gcgtacagcc agcacgatgg tgttgggtgt
    12481 agtcagtctg gcaagggaat tgagatcttc cagacgctcc gtttccgtac ccgcaaaacg
    12541 ctcacaacga cgggcaataa cctcgacgtt attgacttga tgccccgcgt cggtaaggcg
    12601 ctggatacca cgcagcgcgg cgtgctgttt aatgctgtaa cccgatgggg caattaagtg
    12661 aaacagagac atggcaattc cttgctgaca acagaaacga aatgtatatc atgccgctta
    12721 ggtgtgccgt tgtcacctca acggcgattc caggctataa ggatagaaga agtgaaattg
    12781 agatggtttg cctttttgat tgtgttatta gcgggttgtt catcaaagca tgactatacg
    12841 aacccgccgt ggaacgcgaa agttccggtg caacgtgcga tgcagtggat gccaataagc
    12901 cagaaagccg gtgcagcctg gggcgtcgat ccacaattga tcacggcgat tatcgctatc
    12961 gaatcgggtg gtaatccgaa cgcggtgagt aaatcgaatg ccattggttt gatgcagtta
    13021 aaagcttcaa cctccggacg tgatgtttat cgccgtatgg gctggagtgg tgagccgacg
    13081 accagcgagc tgaaaaatcc agagcgtaat atttcaatgg gggcggctta cctgaatatt
    13141 ctggaaaccg gcccgctggc aggcattgaa gatccgaagg tactgcaata tgcgctggtg
    13201 gtgtcatacg ctaacggggc aggtgcgctg ctacggactt tctcgtcaga tcggaaaaag
    13261 gcgatcagca aaatcaacga tttggatgct gacgagttcc tcgatcacgt agcgcgcaat
    13321 catcctgcgc cgcaggctcc gcgctatatc tacaaacttg agcaggcact ggacgcgatg
    13381 taaatcagtc gcgtactttg tccgctttct cccgggcttc ccgctcgaga gagaaaataa
    13441 tccgttgtaa ttgccgctcc accgtcgggc tgacgttaag aaaacggaag ctcagacggg
    13501 gagtggtgat ggtttcattc ttgccatcaa tcactttgcg ctcgctgatg gagattaact
    13561 gggcgtcaaa gtgaaaaaca ccccattgcc ccatgttgac ttcaatctga gcgaagcgca
    13621 tgccttcttg taattcggca ggctttgctg tttccagtaa tgcgcccatg ccgcctaacg
    13681 acaaatcata caggcggaaa cgtaacgtac tgttatccgc cagtttggtc tggcaaaaat
    13741 aaggcggatg gagtggggcg gagatgcgga aatatcggcg tcgttgtaca aaccataagg
    13801 tgggaggcgg tacggtaata aatgccggaa gctgcaagta ttcactctgc tgtagttgtt
    13861 caacagtaaa ctcgactttc gcaccctgag tttcggcggt aatggtaata tgctgcgcct
    13921 ttagcacggc gatgttgtct tcggcttgac tgccgaaatc cagcaccagt ttatccgggg
    13981 ttattgccag tattttgctg atcagctgcc cgccattcca actgagacgc aaaggaattg
    14041 cggctttgtg caaatcgcgt aacacgccca ggacggctaa cggattttgt ttcaggaact
    14101 gctcatggta atgactcacg cggaaaaact cctgactgac aaactgtctt tggtttatcg
    14161 gtcacagtta acaaaactta atacaaatgc gtgaatattt tttacatgtt gttcttaaat
    14221 cagccgacat acgcccagca tcgatcccgc ccttgcctat acttagagcg ttgacgtaag
    14281 catttcttgc gtccgattca tcgaaacgag ggcttgaaca tgggaattat tgcctggatt
    14341 atttttggcc tgatagccgg cattatcgcc aagctaatca tgccggggcg tgatggtggt
    14401 ggatttttcc agacctgtat tctcgggata gtcggtgcgg tggtcggcgg ctggctggcg
    14461 accatgtttg gcattggcgg ctccatcagc ggttttaatt tgcacagctt cctggtggcg
    14521 gtggtgggag ctattctcgt tctgggctta ttccgcctgc tgcgaagaga ataagatttt
    14581 cataaggcgg atagcgatac agatgccgct atccgctttt cacatcagaa cgt
//
LOCUS       DAJVUY010000102        14554 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.102, whole genome shotgun sequence.
ACCESSION   DAJVUY010000102 DAJVUY010000000
VERSION     DAJVUY010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14554
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.102"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ72_002768"
     CDS             complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ72_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS2012433.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ72_002769"
     CDS             complement(280..2394)
                     /gene="fusA"
                     /locus_tag="OQQ72_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HCS2012434.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ72_002770"
     CDS             complement(2491..2961)
                     /gene="rpsG"
                     /locus_tag="OQQ72_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCS2012435.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ72_002771"
     CDS             complement(3058..3432)
                     /gene="rpsL"
                     /locus_tag="OQQ72_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCS2012436.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ72_002772"
     CDS             complement(3558..3845)
                     /gene="tusB"
                     /locus_tag="OQQ72_002772"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HCS2012437.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ72_002773"
     CDS             complement(3853..4212)
                     /gene="tusC"
                     /locus_tag="OQQ72_002773"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HCS2012438.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ72_002774"
     CDS             complement(4212..4598)
                     /gene="tusD"
                     /locus_tag="OQQ72_002774"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HCS2012439.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4598..5320)
                     /locus_tag="OQQ72_002775"
     CDS             complement(4598..5320)
                     /locus_tag="OQQ72_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS2012440.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ72_002776"
     CDS             complement(5487..6299)
                     /gene="fkpA"
                     /locus_tag="OQQ72_002776"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS2012441.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6520..6738
                     /locus_tag="OQQ72_002777"
     CDS             6520..6738
                     /locus_tag="OQQ72_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HCS2012442.1"
                     /translation="MQDLSLEARLAELESRLAFQESTIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ72_002778"
     CDS             complement(6787..7377)
                     /gene="slyD"
                     /locus_tag="OQQ72_002778"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS2012443.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7472..7672)
                     /locus_tag="OQQ72_002779"
     CDS             complement(7472..7672)
                     /locus_tag="OQQ72_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HCS2012444.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ72_002780"
     CDS             complement(7682..9493)
                     /gene="kefB"
                     /locus_tag="OQQ72_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HCS2012445.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEE
                     DEKPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYY
                     GDATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHE
                     LLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHA
                     DTVQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ72_002781"
     CDS             complement(9493..10044)
                     /gene="kefG"
                     /locus_tag="OQQ72_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HCS2012446.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10170..12083
                     /locus_tag="OQQ72_002782"
     CDS             10170..12083
                     /locus_tag="OQQ72_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS2012447.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12083..13105
                     /locus_tag="OQQ72_002783"
     CDS             12083..13105
                     /locus_tag="OQQ72_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS2012448.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13099..13317
                     /locus_tag="OQQ72_002784"
     CDS             13099..13317
                     /locus_tag="OQQ72_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HCS2012449.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13371..14240
                     /locus_tag="OQQ72_002785"
     CDS             13371..14240
                     /locus_tag="OQQ72_002785"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HCS2012450.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14295..>14554)
                     /locus_tag="OQQ72_002786"
     CDS             complement(14295..>14554)
                     /locus_tag="OQQ72_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS2012451.1"
                     /translation="IDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTG
                     RDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3597 a         3968 c         3586 g         3403 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcacgagc agcaccgccg taggttttag ccagtacggt ggtgattgca
      121 gcggtcagag tagttttacc gtggtcaacg tggccgatag taccaacgtt aacgtgcggt
      181 tttgtacgtt caaatttttc tttagacacg gctatattcc ttactatagt gctctcccct
      241 tcaggagaga gcacgggact ttggtattaa cccttaggct tatttaccac gggcttcaat
      301 tacggcctga gcaacgttac tcggcgcttc atcatacttc aggaattcca tagtgtatga
      361 tgcacgacct ttggtcagag aacgcagctg agttgcgtat ccgaacattt cagacagcgg
      421 tacttcagcg tggatcttaa cgccagtaac ttcagattcc tgacctttga gcataccacg
      481 acgacggctc aagtcaccga taacgtcacc ggtgttctct tccggagttt ctacttcaac
      541 cttcatgatc ggctcaagca gaactggttt cgctttctta aagccttctt taaaggcgat
      601 agaagcagcc agtttaaacg ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg
      661 cagacgaata cccatgtcta ctaccgggta gcctgccagc ggacctgctt tcagctgttc
      721 ctggatacct ttatcaacgg ccgggatgta ttcgccaggg attacaccac ctttaatgtc
      781 gttgatgaac tcgtagcctt tcgggtttga acccggctcc agcgggtaca tgtcgataac
      841 aacatgacca tactgaccac gaccaccaga ctgtttcgcg tgtttacctt caacatcggt
      901 aactttctgg cggatagttt cacggtaagc aacctgcggt ttacctacgt tcgcttcaac
      961 gttgaattca cgcttcatac ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc
     1021 gatgattgtc tggttagatt cttcgtcagt ccatacacgg aaagacgggt cttctttagc
     1081 cagacggccc agagccagac ccattttttc ctggtcagct ttggttttcg gttcaactgc
     1141 gatggagatt accggctcag ggaattccat acgttccaga atgatcggcg catccgggtc
     1201 acacagggtg tcaccagtgg ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc
     1261 gcgaacttct ttgatctctt cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg
     1321 ctcacgtgca gctttcacgg agttcagtac ggtatcacca gagttaacca caccggagta
     1381 aacacggaag aaggtcaggt taccaacaaa cgggtcggta gcgattttga acgccagtgc
     1441 agagaacggc tcgtcatcac ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag
     1501 gataccgttg atcgcaggta cgtcaaccgg ggatggcagg taatcaatta ccgcatccag
     1561 catcgcctga acacctttgt tcttgaacgc agaaccacag gttaccagga tgatttcgtt
     1621 gttcagaacg cgctgacgca gagcaccttt gatttctgct tcagtcagtt cttcaccacc
     1681 caggtatttt tccatcagct cttcagaagc ttcagctgcg gattcgatca ggttctggtg
     1741 ccattcgtta gccagttcaa ccatgtctgc cgggatatct tcgtattcga aggttacgcc
     1801 ctggtcagcg tcgttccagt taatagcttt cattttcacc aggtcaacaa caccggtgaa
     1861 atgttcttca gcaccaatcg ccagctgcag cggaaccgga ttcgcgccca gacgggtttt
     1921 gatctggtta acaactttca ggaagttcgc acccatgcgg tccattttgt taacgaacgc
     1981 aatgcgcgga actttatatt tgtttgcctg acgccatacg gtttcagact gcggctgaac
     2041 accaccaact gcgcagtaaa ccattaccgc accatcgaga acacgcatgg aacgttctac
     2101 ttcgattgtg aagtcaacgt gccccggggt gtcgatgatg ttgatgcgat gcggctcata
     2161 ctgcttagcc ataccagacc agaatgcagt agtcgcagcg gaagtgatgg taataccacg
     2221 ttcctgctcc tgctccatcc agtccatggt tgcagcgccg tcatgaactt cacctatttt
     2281 atggtttaca ccggtgtaga acagaatacg ttcggtagta gtggttttac cggcgtcgat
     2341 gtgcgcactg ataccgatgt tacggtagcg tgcgatgggt gttgtacgag ccatttgttt
     2401 cctcgtttat cttttaggcg ttcaatttaa gtagcccaaa gcgggctgct tactggaagc
     2461 gcccgcctgg tgactaaaac tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt
     2521 ggcttcggcc atacggtgaa cgtcttcacg tttcttaact gcagtacctt tgttttctgc
     2581 agcatcagaa agttcgttcg ccaggcgcag agccatggat ttatcaccgc gtttacgagc
     2641 agcttcaacg atccaacgca ttgccagagc attacgacga accggacgga cttcaactgg
     2701 tacctgataa gtagaaccac caacgcggcg agacttaact tctacagtcg ggcgcacgtt
     2761 ttcgagagct acttcgaatg cttccagttc agatttacca gagcgctgag ccagggtctc
     2821 cagcgcgctg tatacgatag attcagcagt agatttttta ccatctacca tcaggatatt
     2881 tacaaattta gccagcagtt ctgatccgaa cttcggatcc ggcagaattt tacgctgacc
     2941 aatgacgcga cgacgtggca tggaaatact ccgttgttaa ttcaggattg tccaaaactc
     3001 tacgagttta gtttgacatt taagttaaaa cgtttggcct tacttaacgg agaaccatta
     3061 agccttagga cgcttcacgc catacttgga acgagcctgc ttacggtctt taacgccgga
     3121 gcagtcaagc gcaccacgta cggtgtggta acgaacaccc gggaggtctt taacacgacc
     3181 gccacggatc aggatcacgg agtgctcctg caggttgtga ccttcaccac cgatgtagga
     3241 agtcacttcg aaaccgttag tcagacgaac acggcatact ttacgcagcg cggagttcgg
     3301 ttttttagga gtggtagtat atacacgagt acatacgcca cgtttttgcg ggcatgcttc
     3361 cagcgcaggc acgttgcttt tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt
     3421 aactgttgcc attaaatagc tcctggtttt agcttttgct tcgtaaacac gtaataaaac
     3481 gtcctcacac aatatgagga cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat
     3541 atacaacgat cccgccatca ccaggccatc tggctggagt gcttaaccgt aagtctgacg
     3601 aaatcagtat agtcaatggg aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca
     3661 ataaggtctt cgttcagggc atagacctta atgggggcat tacgcagact ttcaaggtag
     3721 cggttaccgt caactgcggc agttacgcca tcttgcaata atagcagttc gtctccttca
     3781 ctgagcagac gcagcagcgc agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc
     3841 agcataaacg cctcaaaacc tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc
     3901 atctgcttcg agcggcgtgg cttcgacaac aaagggtgtc tgcggatcta acccgcgttc
     3961 gcgcagtgaa gccgcacaaa cccagcactg ttcaatgtcg tacagaccca acaatttaaa
     4021 agtggcaatg taatcacgcg ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa
     4081 aacgccatca gcaataaaga agacggccag atcgtcagtt aatgcggaag ttgccagtaa
     4141 agcatctaaa ccttcccgac cagcagctgt accatgaggt gcagtagaaa aaacaaacgc
     4201 aattcgtttc atcagaactg taccaccctg tcacaggtca gcgaggcttc cgccagcgcg
     4261 ccaagtccgc ttaaggtaaa tcccggctga aggtttgacg aagccagccc cagccttcct
     4321 gcttcagttt catcgacgat accgcggcgt aacgctgccg ctacgcagat attcagcgcc
     4381 acaccatgtt gcgcattcaa ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc
     4441 ggtgaggtca attggttagc gttatagacc cctccccgat agaaaaagac gctgcttaac
     4501 tcatggcctt ctactatcag cgcctgcgca aactgaaaag cactactcgc ctgttgcgta
     4561 ccgtatgctg gcccggtcac cacgatggca aaacgcatta cttatcttgc ccctggaaat
     4621 caccgctctt gaactggcgg atgtagagat agacagtgtg tttggagatg ttcaggcggt
     4681 cagcaacctg gttgatcgca tctttaatat cgaagatccc tttctcgtag agattcagca
     4741 cgatctgacg atttttggcg ttattagaaa cattgcgatc ggcattcact tcttcgatgg
     4801 tgaactccag cgtttgggta accagatctt caacagaaga ggcaaagttg acgcttgaac
     4861 cgacatccgg ggtttctggc ggcacaaaag tgctcataat ctgcgagaag ggaacatcaa
     4921 gattcatatt gatgcacagc agaccaatta cacgctgttc gcggttacga atcgcgatag
     4981 tcagggactt cattaatacg ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc
     5041 tatccgctcc cgtcatatcg tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa
     5101 tcttccggcc tgtatgttca ccgttagcaa tgcgaatggc tgaacatttt agatcctgca
     5161 aagagtgcaa aacgatttca cagtgggagc caataagcat cgctaacccg tccaccaccg
     5221 cttcgtagga tttcagaata tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat
     5281 ccaactcact ggtttcgttg gttaaaagcg acctggacat gaaaaaaaac actccttttc
     5341 aggagcctgt cgttaacttt tcagggcagg ctcattaatg atgcgggtaa ctaaattaat
     5401 acagcggagg ttccgctttc cagcactaat tatatccggc ctgtaataaa aaaaccgccg
     5461 cctggtcagg cggcggttct taatgcttat tttttagcag aatctgcggc tttcgcatca
     5521 gcttccggct ttgcatcagc cttcggtgct ggtttcacat ccagcagctc tacgtcaaac
     5581 accagggtag aattcggtgg gatccccgga acacccgctt tgccgtaagc cagttctggt
     5641 ggaataacca gtttgatctt accgcctttc ttgatgttct tcagaccttc tgtccaaccc
     5701 gggataacac cgtccagacg gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac
     5761 tctttaccgt cgatcagcgt acctttgtag ttcactacaa cagtatcgct gtctttcggt
     5821 gcttcgcctt taccggcttc tactacctga taaaccagac cagttgaaga ggttttcaca
     5881 cctttctctt tggcaaattt ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg
     5941 tctttttcca tcttcgcctg agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc
     6001 tgttcgatct cttggtcgga gagtttgctc ttatcagcaa atgcatcctg aacaccagcg
     6061 atcagctgat ctttatccag tttgatgccc agtttttctt gttctttaag agagttttcc
     6121 atgtaacgac ccagcgaagc acccagtgca taagctgatt tctgatcgtc atttttgaac
     6181 gctgctttgc tgtcagcagt tgtagcaggt tttgcagctt cagcagcaaa agtgattggt
     6241 gcatgcaggg caacggccat tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc
     6301 catatctcca ggatcggggc atctcacccc agggttaact attatcagaa gggtactata
     6361 aagcgttgtc gaacaaatct acatacagac acgccctatt atcatctatt ttcagactct
     6421 ttttgtttaa attagtttcg atgaccgcga aatgagtgct gtctcgggca gcaaagttaa
     6481 gtagaatccg cggcaaccat tcgacaaaag aggtgaatca tgcaggattt atcattggaa
     6541 gcacgcctgg cagagctgga gagccgactg gcttttcagg aaagcaccat tgaagaactg
     6601 aacgtcacgg tgaccgctca tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg
     6661 ctgaccgaga agttaaaagc cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg
     6721 ccaccgccac attattgagg cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt
     6781 tcggtattag tggcaaccac aaccgccgtt gcctttaccg ccacagcagc cttcgccacc
     6841 gtgttcatga ccgtgatcgt ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg
     6901 gtgatgatcg tgcgcgccgt gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg
     6961 aatcgccaca acctcaacgt tgaatttcag gttctgaccg gccagcatgt ggttaccatc
     7021 aaccactacg tgatcgtctt caaccgcagt gatttcaacc ggtaccggcc cctggtcggt
     7081 ttcagccagg aaacgcatac ctacctgcag ttcatcaacg cccataaata cgtctttagg
     7141 aacacgttgc accaggtttt cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac
     7201 atcaaatttg tcgccaactt catgaccttc cagcgccgtt tccaggccag agatcaggga
     7261 accgtgacca tgcaggtagt ccagcggcgc actcaccgga gactcatcaa ccaacacacc
     7321 gtcttctgta cgtacctgat aggccaggct gaccaccagg tcttttgcta ctttcatgat
     7381 atctcctgag catgggaaga atagtggcgc agattgtagc ggaattctgc agccgtgtac
     7441 tcactagctt aaaaaaactc ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt
     7501 gctcatcttt gcgaacgtga tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc
     7561 acttaacgca ttcaacaata tcaatattat tttcgcgcca catcgccatt gaatcctgtg
     7621 cctgacaggc cgggcatttt gcgcccgcaa taaaacgttt tcggattgcc atctttaccc
     7681 tctactcaaa ttcatcccag ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga
     7741 aaatctcttc cagttcgcgt cgggcttccc tggcgcgaga aatttgtaca gtatcggcat
     7801 gcattgggat gagctctcgc agcatccgca tatccaggcg gcgaaaatgc agttgcgccc
     7861 gctgcgcctg atgcggatgc atcccaagcg tgaccaaagt cttgcgcccc agctctaacg
     7921 cactggagaa tgtttcacgg gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt
     7981 ccacacgtcc gcgcgctcgc gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt
     8041 ccaccagctt catggtgtct tccggctcgt tacaggtaat gacgatagac tcagcggcct
     8101 ctgcacccgc agaacgtaat agatcgacct gcgtggcgtc gccgtaataa actttgtagc
     8161 catatttacg catcaggtta acggcgctga tatcccgctc cagcacggta atgcgcattt
     8221 tatttgccat cagcaaacga ccaatcacct gaccaaaacg cccgaagccc acgacaatga
     8281 cctggggttt atcatcgttg acccacggtt tttcgtcttc ttcttccggt ccgttaaact
     8341 ggcgggataa ccatttatcc accagcttca tcagcaacgg cgtggtcatc atggaaagcg
     8401 tcaccgtcac cgtcaccagc aacagcgcca tctggtcgcc ctggaataaa cgttgtgaag
     8461 aagcggtaga aaagaggaca aaggcaaact caccgccctg actcaacacg ccagcaaact
     8521 gcatccgctc tgagctacgc acgccataca atcgcgccag cagatacagc acgagaattt
     8581 tcaccgccac cagcacaacc acgcttatca ctacccacaa cagatgggta taaagcaccc
     8641 cgaggttgag cgacatgccg acagagataa agaacaaacc gagcagcaag cctttgaagg
     8701 gatcgatagc cgtttccagt tcatggcgat attcactttc cgccagcagc acgcccgcaa
     8761 taaatgtacc gagcgccatc gacagcccca gcgcatccat aaacaatgcg gaacccaaca
     8821 ccagcagcag cgtcgcggcg gtgaacactt cccgcacgcc agaagctgca ataaagcgga
     8881 ataccggacg cagtaaatag cgcccaccaa tcagcatgcc gacaaacgcc agcaccttca
     8941 tgccgatctt catccagtcg aaatgttcgt ctgccgaccc cgccaacaac ggcactaacg
     9001 ccagtgctgg gatcactgcc agatcctgaa acagcagaac cgaaaacccg agctggccgg
     9061 attcgctgcg attcatccct ttctcacgca tcaattgcaa cgccattgca gttgaagaca
     9121 tcgcaaggcc aatgccaccg accaccgccg cctgccaggc gaaatccgtc agcatcaata
     9181 atcccgccag caacgccgcg cttaacagca cctgtgccgc gcctacgcca aaaatcgaac
     9241 gccgcagttg ccaaagtttg gagggattca actcaaggcc gatgataaac atcaggaata
     9301 ccacgccgag ttccgaaaag tggaggatct catcgacgtc gctaataaac cccagccccc
     9361 acgggccaat tgcaatccct gccagcaaat atcccaacac agcgccaatc cccagccgcg
     9421 atgccaacgg caccgcagcc accgccgcga agagaaacag cactcctgcg agtaaaaaat
     9481 cggaaccttc catcagcggc ctcctggaga cagcggattt gccagccagt caccgtaggc
     9541 tctggcgtgg ttcgccagct cctttgcact ttgccgtctc gcccagtaaa taatgatggg
     9601 acttaaccaa tgcatccggc acatgcccgc cgccagttca aaggggcgca gcacatcgct
     9661 catcgggtag cgattcagcg cgtcataacg gtaagcactt tccggctcgc cggtggtaat
     9721 cacgttacgc cagtactttc ccgccagttg gtttcctccc ggcccgctgg caaaaccacg
     9781 acttaatacc cggtccagcc actctttcag tagcgccggg cagctatagg tataaagagg
     9841 atgctgaaag acaatcacct cgtgctcgcg cagtaatgcc tgctcacggg ggatatcaat
     9901 aaaaaaatcg ggatagtgcg cgtaaaggtc gtgcacggta acattgctga gctgcgtggc
     9961 cggtttaagc agtacccggt ttgccaccga gtcctgagat tccggatggg catacagcag
    10021 caaaactttc gctggctgag acatcatccc cctcccggta tggtttttgt gtatagtcgc
    10081 tgttttgggc taccattgcg cccggtgcgg cagctcgccc atacattatc ataatgataa
    10141 gttaacatag tctgaacata cggcgcctta tgattgtttt ctcctcgtta caaattcgtc
    10201 gcggcgtgcg cgtcctgctg gataatgcca ccgccaccat caaccctggg cagaaagtcg
    10261 gcctggtggg taaaaacggc tgtggtaaat ctaccctgct ggcattgctg aaaaatgaaa
    10321 tcagcgccga cggcggcagc tacacctttc cgggaagctg gcaactggcg tgggtgaatc
    10381 aggaaacgcc ggcgttatcg caagcggcgc tggaatatgt cattgacggc gaccgtgaat
    10441 atcgtcaact ggaagcgcag ctgcacgacg ccaacgaacg taacgacggg cacgccattg
    10501 cgaccattca tggcaagctg gatgctattg acgcatggag tattcgctcc cgtgccgcca
    10561 gcctgctgca cggcctcggt ttcagcaatg aacaactgga gcgcccggta agtgatttct
    10621 ccggtggctg gcgtatgcgt cttaaccttg cccaggcgct gatttgccgt tcagacttgc
    10681 tgctgctcga cgaaccgact aaccacctcg atctcgatgc cgttatctgg ctggaaaaat
    10741 ggttgaagag ctatcaaggc acgctgatcc tgatctctca cgaccgcgac ttcctcgatc
    10801 cgatcgttga taaaattatt catatcgaac aacaaagcat gttcgagtac accggcaact
    10861 acagttcgtt tgaagtacag cgcgccaccc gtctggcgca acaacaagcg atgtatgaaa
    10921 gccagcagga acgcgtggca catctgcaaa gttatatcga ccgtttccgt gccaaagcca
    10981 ccaaagcgaa gcaagcccag agccgcatta agatgcttga gcgtatggag ctgattgccc
    11041 ccgcgcacgt cgacaacccg ttccgcttta gcttccgcgc gccggaaagc ctgccaaatc
    11101 cgttactgaa gatggaaaaa gtcagcgcgg gctatggcga tcgcattatt ctcgactcga
    11161 ttaaactgaa cctggtgccc ggctcgcgca ttggtctgtt aggccgcaac ggcgcgggta
    11221 aatcgacatt aatcaaactg ttagccggtg aacttgcgcc agtcagcggt gaaattggtc
    11281 tggcgaaagg gatcaagctc ggctacttcg cccagcatca acttgaatac ctgcgcgccg
    11341 acgaatcacc tattcaacat ctggcacgtt tagcgccgca ggagctggaa caaaaactgc
    11401 gtgactacct cggcggcttt ggtttccagg gcgataaagt aaccgaagaa acgcgccgct
    11461 tctccggtgg ggaaaaagcc cgcctggtgc tggcattaat tgtctggcag cgtccgaatc
    11521 tgctgctgct cgacgaaccg actaaccacc ttgacctcga catgcgtcag gcactcaccg
    11581 aagcattaat cgagtttgaa ggcgcgctgg ttgtcgtttc gcacgaccgt catttgctgc
    11641 gttccaccac tgacgatctc tacctggttc acgatcgtaa agtcgaaccg ttcgacggcg
    11701 atctggaaga ttatcaacag tggttgagcg acgtacaaaa gcaggaaaac cagaccgacg
    11761 aagcgccaaa agagaacgcg aacagcgccc aggcacgtaa agatcagaag cgtcgggaag
    11821 cggagctgcg tgcgcaaacc cagccgctgc gtaaagagat tgcccgtctg gaaaaagaga
    11881 tggagaagct gaacgcgcaa ctggcgcagg cggaagagaa actcggcgac agcgaactgt
    11941 atgaccagag ccgtaaagcg gagttgaccg cctgcctgca acagcaagcc agcgccaaat
    12001 ccggcctgga agagtgcgaa atggcgtggc tggaagccca ggagcagctt gagcagatgc
    12061 tgctggaagg ccaaagcaac tgatggcgca gataacgacg accgatgcca atgaattcag
    12121 cagcagtgct gaattcaccc ctatgcgcgg ctttagcaat tgtcatctac aaactatgct
    12181 gccgcgtttg tttcgtcgtc aggtgaaatt caccccgtac tggcagcggc tggagttgcc
    12241 cgacggcgat tttgtcgatc tcgcgtggag tgaagcccct gcacaggctc ggcataaacc
    12301 gcgtttagtg atatttcacg ggctggaagg cagtctcaat agcccttacg cccacggtct
    12361 ggttgaggcg gcgcaaaagc gcggctggct gggcgtggtg atgcattttc gcggatgcag
    12421 cggtgaacca aaccgtatgc accgcattta ccattcgggc gaaaccgaag acgccagttg
    12481 gtttttacgc tggctgcaac gcgaatttgg tcatgcgcca acggctgccg tcggctattc
    12541 gctcggcggt aatatgctgg cctgtttgct ggcaaaggaa ggcaatgatc tcccggttga
    12601 tgcggcggtg attgtctctg cgccgtttat gctggaagcc tgtagctatc atatggaaaa
    12661 gggcttttcc cgcgtttatc agcgttactt gctgaacctg ttaaaagcca atgccgcgcg
    12721 caagctggca gcctaccccg gaacgctgcc gattaatctc gcgcagttaa aatcggtacg
    12781 tcgcatccgt gaatttgacg atctaatcac cgccagaatt cacggctacg ccgacgctat
    12841 cgactattat cgtcagtgta gcgccatgcc gatgctgaac cggatcgcca aaccgacgct
    12901 gattattcac gccaaagacg atccgtttat ggatcatcag gtgatcccga aaccggaaag
    12961 tctcccctcg caggtggagt atcaactgac tgaacatggc ggtcatgttg gctttattgg
    13021 cggtacatta cttcatccgc aaatgtggct ggagtcacgc attcctgact ggttaacaac
    13081 gtatctggag gcgaaatcat gttgattccg tggcaagacc tctcccccga aacgctggaa
    13141 aatttaattg aaagctttgt gttacgtgaa ggcaccgatt atggtgaaca tgagcgtaca
    13201 cttgaacaga aagtcgccga cgtcaaacgc cagctacagt gcggagaagc ggtgctggta
    13261 tggtcggagc tgcacgaaac ggtcaatatt atgccgcgca gtcagtttcg cgaataacct
    13321 gcaaccgtcg gcggacgaga taataatgat agctaagtca tggagttact atgtctgcca
    13381 aacatccggt cattgcggta acaggatcca gcggcgcggg gaccaccacc accagcctcg
    13441 cgtttcgtaa aatattcgcg cagttaaatc tgcatgcagc tgaggtggaa ggcgacagtt
    13501 ttcaccgtta cacccgcccg gaaatggaca tggcgatccg caaagcgcgc gacgccgggc
    13561 ggcatatcag ctacttcggc cccgaagcga acgacttcgg cctgctggaa caaaccttca
    13621 ttgaatacgg tcagagcggc aaagggaaat ctcgcaaata tctgcatacc tacgacgaag
    13681 ccgtaccgtg gaatcaggta ccgggaacat tcaccccctg gcaaccttta ccagaaccca
    13741 ctgatgtact gttttatgaa ggtttacacg gcggcgtagt cacgccacag cataacgttg
    13801 cgcagcatgt ggacttactg gtcggcgtag tgcctatcgt taaccttgag tggattcaaa
    13861 aactgatccg cgacaccagc gagcgcgggc actcacgaga agcagtgatg gactcagtag
    13921 tgcgttcaat ggaagactat atcaactaca tcacaccgca gttttcccgc acccatctta
    13981 acttccagcg cgttcccacc gtcgacactt caaacccgtt cgcggcaaaa ggtatcccgt
    14041 cgctggatga aagctttgtg gtgatccatt ttcgtaatct ggaagggatc gatttcccct
    14101 ggctgctggc gatgttgcaa ggctcattca tttcccacat caatacgtta gtggtaccgg
    14161 gcggcaaaat gggtctggca atggaattaa ttatgctgcc gctggtgcaa cgattgatgg
    14221 aaggaaagaa aatcgagtaa ctctgctatt acgccggata aaatactatc cggcttcaca
    14281 acgggatagt taaatcacgc ggcaaccact tcatacgagt gagtaatatt caccgctttt
    14341 tccagcatca acgccactga acaatatttc tcggcagaga gatcaaccgc acgcgcaacc
    14401 gctgcgtctt tcaggtcgcg accggtgacg ataaaatgca gattaatgtg cgtaaacagg
    14461 cgtggtgcct cttcgcggcg ttcagaggtc aattttactt cacaatcgac cacatcctga
    14521 cgcccttttt gcaggatcga aaccacatcg atgg
//
LOCUS       DAJVUY010000103        14423 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.103, whole genome shotgun sequence.
ACCESSION   DAJVUY010000103 DAJVUY010000000
VERSION     DAJVUY010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14423
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.103"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ72_002787"
     CDS             complement(<1..787)
                     /gene="fimH"
                     /locus_tag="OQQ72_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HCS2012452.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLG"
     gene            complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ72_002788"
     CDS             complement(807..1310)
                     /gene="fimG"
                     /locus_tag="OQQ72_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HCS2012453.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGETKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ72_002789"
     CDS             complement(1323..1853)
                     /gene="fimF"
                     /locus_tag="OQQ72_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HCS2012454.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRDYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ72_002790"
                     /pseudo
     CDS             complement(1863..4499)
                     /gene="fimD"
                     /locus_tag="OQQ72_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher FimD"
     gene            complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ72_002791"
     CDS             complement(4566..5291)
                     /gene="fimC"
                     /locus_tag="OQQ72_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HCS2012455.1"
                     /translation="MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR
                     VIYPAGQKQVQLAVTNNDENSTYLIQSWMENADGVKDGRFIVTPPLFAMKGKKENTLR
                     ILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQFAIISRIKLYYRPAKLALPP
                     DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAG
                     SNITYRTINDYGALTPKMTGVME"
     gene            complement(5328..5867)
                     /locus_tag="OQQ72_002792"
     CDS             complement(5328..5867)
                     /locus_tag="OQQ72_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418735.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS2012456.1"
                     /translation="MKRKRLFLLASLLPMFALAGNKWNTTLPGGNMQFQGVIIAETCR
                     IEAGDKQMTVNMGQISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGK
                     NPDVLSVGEGPGIATNIGVALFDDEGNLVPINRPPVNWKRLYSGSTSLHFIAKYRATG
                     RWVTGGIANAQAWFSLTYQ"
     gene            complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ72_002793"
     CDS             complement(5932..6480)
                     /gene="fimA"
                     /locus_tag="OQQ72_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial major subunit FimA"
                     /protein_id="HCS2012457.1"
                     /translation="MKIKTLAIVVLSALSLSSTAALAAATTVNGGTVHFKGEVVNAAC
                     AVDAGSVDQIVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVASKAAVAFLGTAID
                     AGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSEQTTLNNGTNTIPFQARY
                     YATGVATPGAANADATFKVQYQ"
     gene            complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ72_002794"
     CDS             complement(6957..7553)
                     /gene="fimE"
                     /locus_tag="OQQ72_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313299.1"
                     /note="upgraded from regulatory protein to switch DNA
                     invertase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimE"
                     /protein_id="HCS2012458.1"
                     /translation="MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISE
                     LLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTLERANWKGADRTDAI
                     FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYL
                     GHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV"
     gene            complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ72_002795"
     CDS             complement(8031..8633)
                     /gene="fimB"
                     /locus_tag="OQQ72_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria switch DNA invertase FimB"
                     /protein_id="HCS2012459.1"
                     /translation="MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIH
                     GFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTPPLLNKEVQALKNWLSIRTSYPHA
                     ESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFALANMGIDTRL
                     IQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL"
     gene            10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ72_002796"
     CDS             10089..10805
                     /gene="nanC"
                     /locus_tag="OQQ72_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313297.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminic acid outer membrane channel
                     NanC"
                     /protein_id="HCS2012460.1"
                     /translation="MKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLK
                     VSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHF
                     SSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYH
                     INSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGV
                     YNGRDNLSENSYRIGVSFKL"
     gene            10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ72_002797"
     CDS             10825..11931
                     /gene="nanM"
                     /locus_tag="OQQ72_002797"
                     /EC_number="5.1.3.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate epimerase"
                     /protein_id="HCS2012461.1"
                     /translation="MNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
                     LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQ
                     VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE
                     AGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK
                     GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF
                     AGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW
                     NNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN"
     gene            11996..12976
                     /locus_tag="OQQ72_002798"
     CDS             11996..12976
                     /locus_tag="OQQ72_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709926.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HCS2012462.1"
                     /translation="MDAIISPDYYYVLTIAGQSNAMAYGEGLPLPAREDAPHPRIKQL
                     ARFAHTHPGGPSCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARK
                     LLSFIPDNAGVLIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRT
                     RAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNIT
                     DAPWFCGDTTWYWKENFPHAYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPD
                     DLIMGYYGSAYRSPENWTTALRSSHFSAAARRGIISDRFVEAILQFWRGK"
     gene            complement(12984..13106)
                     /locus_tag="OQQ72_002799"
     CDS             complement(12984..13106)
                     /locus_tag="OQQ72_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012139841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS2012463.1"
                     /translation="MISFVFLLLVCPNCHAMLHRRKPPFTPEELKALMDANKSN"
     gene            13188..14060
                     /locus_tag="OQQ72_002800"
     CDS             13188..14060
                     /locus_tag="OQQ72_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS2012464.1"
                     /translation="MASSKSLQQAIANIKIWHKGEQRAPHKPLLLLYVLAGYLNGHPR
                     LFDYGSEIYEPLHSLLERFGPQRSQYRPDMPFWRLQGDGFWQLHNAELCSTAGSSRQP
                     PVKELNEYHVAGGFDEQHYALVTGNKKLINTLAQQILEAHFTESIQEEIADELGFDLQ
                     QIRKQRDPLFRKNVLRAYNYQCAICGFNMRHDDTTVALEAAHIKWKQHGGPCEIPNGL
                     ALCAIHHKAFDKGSIGLDENMRVLVSDAVNGGGSVERLFWDFDGKIIALPQVRKNYPY
                     EGFVEWHRNEVFRG"
     gene            14105..14284
                     /locus_tag="OQQ72_002801"
     CDS             14105..14284
                     /locus_tag="OQQ72_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001153035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012465.1"
                     /translation="MQDLAASLQLAFDSGAKRVLLPISWAMDIPTVPAELFTKFQVSF
                     YSEPVDAVYKALDVN"
BASE COUNT         4042 a         3327 c         3152 g         3902 t
ORIGIN      
        1 ctcctaacga taccgtgtta ttcgctggaa taatcgtacc gttgcgcgtc aactgtacgc
       61 cgacgccctg cgctggtgaa aacgacgcgg tattggtgaa aatcgagttg cccgcatctg
      121 cggttgtgcc ggagaggtaa taccccaggt tttggctttt cgcacaataa acggtaagag
      181 gaattggcac tgaaccaggg tagtccggca gagtaacggt gacatcacga gcagaaacat
      241 cgcagccgcc agtaggcacc accacatcat tattggcgta aatattccac acaaactgga
      301 aatcatcgct gttatagttg ttggtctgtc gcaaaataag cacggcaatt aatgagccag
      361 ctttaatcgc caccccgccc gcactgctca caggcgtcaa ataaagcgcc accggccacg
      421 gcttatccgt tctcgaatta taaacaaccc gcggcgtttc gctggtggtc ggaaatggat
      481 agctactgcc actatatttt acggtcccgg aaaaattaga taacacgccg ccataagccg
      541 agcctcgttg cagtgtgaca tagtctgtaa tggtttccgg ataatcgtta tggcaaaaga
      601 tttgcgtcga aagatctacg accaggtttt gccccacatt cacgacaggc gcaaggttta
      661 cataaacatt agcgctgcca ccgccaatag ggatagcagt accattggcg gttttacagg
      721 cgaatgacca ggcatttacc gaccagccca tcagcagtac agcaaacagg gtaataactc
      781 gtttcattac aattatctct tcgggttcag ctgtaggtat aggtgatgct aatcactgcc
      841 tgaatggttc cctgagtggc tccgccattt accgtcaatg ctctgacctg taacgggaag
      901 tgcgctgatt gtgaggaatc atccacctga actgttttgg tttcgccagt attcaatgtg
      961 ttgccactgt catcctgtag ctctaactgg atgttttgcg cggtcccctg gtttttataa
     1021 tatccggtac tgtcggctgc cccgctgaag ctggcagtga ccctcgacgt tcccaccgga
     1081 caattagtca actcaagcgc aacatcatgc caggccgatg ccgccccggc agacatcaga
     1141 ctgaaagaat aaagatcgcc gagatcaacc gtggcattgg tggtggaaac tgtgcacggt
     1201 ttggcgacga ccttaccgtt caccgtgatg gtgacatcgg ctgcctgtat tgtcgcactt
     1261 gcgagcgcca atattgccgc caataaatac ccacgtttgc gccatttcat gagcatctcc
     1321 agttactgat attcaagagt gaaggtagcc gtggcattga tatgccccgc agtgacaggc
     1381 acctgtgtcg ccattagccg ggcgtaaaaa ttcaacgtat ttggtttacc cggcgtcagg
     1441 gtcgtccacg aaatcgcgga cgatggagca ttaaggggta tctgattttg ctgctcattc
     1501 agaagctgta ttcccagtcc cgaagccgct gacaccgtat tttcaagtgc aagcaggttg
     1561 gcattgtggc tatctgcaac gccggtaaac ccaaccttta cggcagaaac ggcgttacca
     1621 cagggtgaca gcaaaatacg aaatggaacg acaggagtcg ttgcgccaat gttgttaaat
     1681 tgcttcgccg cgttttccat cagatcaaca gtaaaattgg ttgattcagc ggccacacta
     1741 cagccgttat ctctgacata gtcgcggata gtaatcgtgc tatccgcagc caaaacgcga
     1801 cttaccgcca gccacaaaaa agcgcacaga agataaaaag gtttgtttct catcacgccc
     1861 ccttaacgac attcagctga tagctgggtt aataactgct gctgactctc tggtggcagt
     1921 tgataattgg cgatacagtg agcattttcc tcttctcccc atttcacctg aacttttccc
     1981 gctaaaggca ttccgctgag gtaaacctga ccattatccg caacaatgcc gctactctgg
     2041 ctactctctg atgtcaccat cgccccaaac ggcagcggct tattattgtg ggttagcgtc
     2101 atgagcagtt ttatcccaac gcgcgcttta aactctgctc gcacgatcgc cccacgagtg
     2161 ggaacaacgt tagcgaccgc gttatctaaa tcgacgttat cagccagggt attggtatcc
     2221 agcgccactc tgttttcccg atattcggtg gcataaggca gcacggcata accgcgccag
     2281 tcggtacgca cccccgtctg gttttcgact tttgcatctt ttgcgccagg cgctttaaca
     2341 agtaccaccg tatcgtttaa cggctgcccc agcgttacgc cattggcatg agccagtacc
     2401 ccaccgctga ctccgtaata gagctgctta atatcatcgc tatggctgta accgatattg
     2461 gcattgccgt aaccaccgcg ataattcagc gtggcgtagc ctgtacttcc gctattacca
     2521 tcgcctcccc cggcatagcc ggtttgcacg ctatagctga ggttgttgtc ttccagcaac
     2581 gtaccgtata caccagccag attggtcatc cgaccgttga gatcgtgtga cacgctgtag
     2641 ctggcactgg catgtcgcca ctgagattta ctgtcagaac gcagccagtg gctgaaagga
     2701 atattgacgt taagcgctaa catctgatcc cgcccttttt gccaggcgtt tttcgtcagg
     2761 ctatagctga gcgtccagtt gatatcttcg aacgcagtat ttaatccagc ctagaattgc
     2821 tcatcgacat tactcgttcc ccaataagtt tgatggctac cactcaaata cagtgttgat
     2881 gtgcgcccga gttgctgagt aacggtgagc tgtaatttcc cgcgtttgtt ataagcgagg
     2941 ttgtaatagt cggtgaattt cggcttaacc tgaataactc catcctgtgt ttcgatgttg
     3001 tagccattca ttcgactgta tgttgtatca gcgaaattaa aatatccgct ggtcgaataa
     3061 cggtaaccca ctaactgaat attcgtgcct gactcattga gcgatttgtt atagagaaaa
     3121 cgcaccgatt gtccgtcatg ctgactgtca tcgggaagtg tggaattagc ctgcgtcata
     3181 tccacagaca gagcgcccag tgcccccatg tttttcccga taccgaaatt aaaagcacga
     3241 taacgatccg ccagttgcgt tccaccatat attgtccagc cagccggaag gccgtggagt
     3301 aatgtacttt ggaaaaagcg gggtttttcc tgctgcgtat ttccactacg gtattctcct
     3361 gccgtaatgg aataacgagt atgcccttca cgttgcaaaa gcgggactga cgaatagggt
     3421 acggtaaaaa tctgcgtgct gccgtcagcc tctttgatcg ttacctgcaa gtcaccacta
     3481 ttacctgcgg catagatatc gttgatggta aaaggccccg gtggcaccgt actattataa
     3541 atgtcatacc cattttgttt aatagtgacc tgtgcagtac cacgagcaat accgtggatc
     3601 accggggcaa atcctctttg gctatcgggt aacatattgt catctgaggc caattgtgcg
     3661 ccgcgaaagt taataccatc gaaaatatcg ccctgggtat aaccatcacc cagcgtcagc
     3721 cgggaacgta acggtattat gtctcgctca agccaggtat tgatatgctg ccatttattt
     3781 ttgctacctg atgatctgtc gctactgtta taactccagc tggtattgtc gcgtaaacac
     3841 cacgcaccaa tatttaaccc actctgtagg tttaaatatg cataatggct gttaccccca
     3901 atctgattct gtacactatt tccgctgaaa ttataattga gcaatccggc attaataccg
     3961 ggatcccata actcaggagg aatataacca cgcgcgcgat tactcataaa tgcctgaggg
     4021 atcgtcaggt tcagtcgctg ctgaccaaca tccagatgcg cagtagcgtc atggatcatt
     4081 gaggttaatg gcacgcaggc atcatctgcc agcagattca taccggagac agaagccgca
     4141 ttcagcccca tactggcaag ttgcgcgcgt gtcaggcagg gaacaatccc ttgttcactg
     4201 tcgcccgtat taaatgtgac atcacgcgtt gccatataac cattattcaa atagatatcg
     4261 acgcgatacg tccctggcgg taattcttgc ccattttcaa aacgcgataa atcggccaca
     4321 gcctggggat catccgctaa aaagcgcgga ttaaaataga gttcggcaga tgacaaaggt
     4381 gcctgtgcgg caaaagcaca ggcgacaacg agccggacaa aaaaaccagc caaacgatgc
     4441 ttacgaatat gcaagcattg tgtgtttcgc tggtaaagtc ttaaattcag atatgacatt
     4501 attcctccgg tttaaaatta cccggcagtc aattcttttt attcaggcga gaaattcccc
     4561 ctgcgttatt ccattacgcc cgtcattttg ggggtaagtg cgccataatc atttattgtt
     4621 cggtaagtaa tattgcttcc tgcatcagaa ggcaatttaa ccgtgctttc gcccattgga
     4681 ggcaccaatg cattttcaag aacccgggtt ccggcattca actctgttac cgtcagataa
     4741 tagggtgtcg ggttaatcag cgtcagagaa ttcgcgctac gacgaaatct taatttttct
     4801 gcggcctgat cgggtggcaa cgctaattta gccgggcgat agtacagttt aatgcggctg
     4861 ataattgcga actgtagcgt attctcagtc aattttgatt tatccattga cggaatcgct
     4921 ttaacattca tccagaataa actttcccgg tcctgtggca attggttatt tgttgcatca
     4981 agaatacgca aggtattctc tttttttccc ttcatcgcaa acagaggagg cgtcacgata
     5041 aaacgaccat cctttacacc atcggcattt tccatccatg attgaattaa ataggtacta
     5101 ttttcatcat tatttgtcac ggcaagttgc acttgttttt gccctgccgg ataaattacg
     5161 cgagtcgcac ctaaggccac tcccgcttca gcgcgtccgg caaccatcat tgccatgaac
     5221 atcaggatac ctgccagcaa gcagaatgtt atttcctgcg atttccttac attggcgttt
     5281 ttattactca ctgtcctgtt cctgttatca cattatctgc tgaacaatta ctgataggtt
     5341 aaagagaacc aggcctgggc attggcgatg ccgccagtaa cccaacgccc ggtagcacga
     5401 tatttggcga tgaaatgtag cgaagtagag cctgagtaaa gccgtttcca gtttactgga
     5461 ggacgattaa tcggtacgag gtttccttca tcatcaaaca acgctacgcc aatattggtg
     5521 gctatccctg gcccctctcc cacggaaagc acatccggat ttttaccatc cgcgacaccg
     5581 tgaaacgcca cacccacacg ttcactcacc accgtgctac attcccgtaa atgaataaca
     5641 aaaggcaccg gtgcgctatc ttcccctacc gcatgaaacc ggttactgct gatttgcccc
     5701 atattgaccg tcatttgttt atcaccggct tcaatccggc aagtttccgc aataatgacg
     5761 ccctgaaatt gcatatttcc gccgggcagc gtagtattcc atttatttcc ggccagagca
     5821 aacattggca gcaacgacgc taatagaaat aatctcttcc ttttcatcgt tatttttatc
     5881 gcacaagggt gggcatccct gcccgtaatg acgtccctga acctgggtag gttattgata
     5941 ctgaaccttg aaggtcgcat ccgcattagc tgcgccaggg gttgcgacac cggttgcata
     6001 ataacgcgcc tggaacggaa tggtgttagt accgttattc agggttgttt gctcactgaa
     6061 tgtcgcacca tccagcgtca gcgcagcacc cgttctgtcc aggatctgta caccaacgtt
     6121 tgttgcgcta cccgcagctg aactctgcag agccagaacg ttggtatgac ccgcatcaat
     6181 cgccgtacct aaaaaggcaa ctgcggcttt agatgcaaca ttggtatcgc aatcattcag
     6241 ctgaatgtta aaaccgacag cagaactggt tgctccttcc tgtgccagcg atgcggtacg
     6301 aacctgtcct aactgaacga tttgatcaac agagcctgca tcaactgcgc aagcggcgtt
     6361 aacaacttcc cctttaaagt gaacggtccc accattaacc gtcgtggcag cggccagagc
     6421 cgctgtagaa ctgagggaca gagccgacag aacaacgatt gccagagttt taattttcat
     6481 gctgctttcc tttaaaaaaa ctatttctaa atcgacatgg gcagtcgttc tgtacacttt
     6541 gttttgtcaa cgagtttgac tgccaacact gcacagtttt cccccaaaag atgaaacatt
     6601 tggggccatt ttgactcata gaggaaagca tcgcgcacaa actttttcag tttatttgtt
     6661 ggcttaatat tctattgtta tctttattta tagattttta tattgcatga ggtggttttt
     6721 ggagagaaga atgaggaaga tgcgtcgagc cacagaaacg ttagctttac atatagcgga
     6781 ggtgatgtga aattaattta caagagaaat aatttacata tcaaacagtt agatgatttt
     6841 tgtcgttttt taaaattttt atgcttgaga aaaaatacgt aacttattta tgatatggac
     6901 aatttggccc caattgtctt gtatttattt tttaacttta ttatcaataa gttaattcaa
     6961 acctcttctc tttttaattt ttcgtttatg agattatttc tttcccataa tccggcaaaa
     7021 cgagcagcat tactggcggt ataacgtaca gtatggcgaa tatttcgatg cccgagataa
     7081 tcctgaatta aacgagtatc tgcaccacgc tccgccagtt cataaccgca agcatgcctt
     7141 aacatatgag gatgagtctg cgttacggtt ccagcttcaa taccggcatc acgaataatg
     7201 cgataggcct gctggcgaga aagccgactc ccgcggcgag aaataaatat ggcgtcggtc
     7261 cggtcagcgc ctttccagtt agcacgttcc agggtccagc gttccacagc ttcacgctca
     7321 tcaaaacgta acgggtgaac ggtagaaaat ccgttcttca gtcggcgaat atttattcga
     7381 ccttcattaa ggtcaagatc ctgataatgc agatcaagca gttcactaat acgcatccca
     7441 tgccgatatg ccaacagaat aagacaataa tctctggctc ccgttgcccc gtaacaaacc
     7501 gcctgcatca tggcctgaac ttctttaccg gtaagataac gacgtttact cacaatagta
     7561 gtactcctaa ctgagatata tttgaatgaa tacctatagg aaacctcaat cggtcaaaat
     7621 tagcccaata gataaaaaga taaccacaca cgaagtgatg tggctatcag tcaattacat
     7681 taaatatcat acaaaaataa aatatcactg atgtgacaac atctattttc attgatttga
     7741 ttcaatataa caatagattg tagtagatta gcttccagtt gcttaaaaaa taaagaaaaa
     7801 agtgcgaaaa caggagaatt taagtgatgt gtaaatttat gaatgatttt gtttatttat
     7861 tttgaagaac ataaaccatt gtattttgta tggatatggt taacttaatg cttattatga
     7921 taattaagaa ttatacttac aataacatca attaataaat ggttaatcat ttttgatata
     7981 tcgtaagaat aatgtagttt ttaacaccat ccctggtatc tcaactatct ctataaaaca
     8041 gcgtgacgct gtcgtcctct ggctctatcc cagatgccgt aaaaacgccc tgcattgctg
     8101 gcggtatacc agacagtatg acgaatattg cgatgcccaa gataatcctg gataagtcgc
     8161 gtatctattc ccatattcgc caaagcaaaa ccacacgaat ggcgtaacat gtgcggatga
     8221 atctccagtg acaacccggc attaccaccg gaagtcgaga taatatggta aaactgttgc
     8281 cgagaaagcg gattcccctt acgcgataaa aatacccact cgctctcagc atgcgggtac
     8341 gaagtacgga tactcaacca gttttttaaa gcctgaactt ctttattcaa tagcgggggc
     8401 gttgttgaaa agcctttttt taatcgatgg atatatatac actttgcctt aagatcaata
     8461 tccgaaatcc tcaatcgaca aatttcactc gcccggaaac catgaataaa acaaagcaaa
     8521 gtcagacaat aattacgtgc tgcatgaggc ccggtatttg ctgctttaag gagtgattcg
     8581 atttcactat gggtcaggaa gttccttttt ttgttatcag ccttattctt catcgttttt
     8641 cccttataat tacagacgcg cactagctgt gctgggttag caataatcca acatttttat
     8701 cctgattatg tttataaaag cgaacgtttg cttaataact aacgtaagtg gaccagttct
     8761 tctgagtgaa cttaaatggg gtagcaacag ttaattataa taacgttgcc atacaaacgc
     8821 tatgctcttg catgctatgt acctttatat atttatcaat cggatacgaa tctaataata
     8881 cccctcatca ttaatgcaac taatcttatc tatatatcat gtgatatgtt ctgtaacaag
     8941 taaaatcagc ataaaaaatt cagcaaaatt taatattcgt tcaactagcc gtctcacata
     9001 tgacattatt agtcaactcc atttgccaca aaatggctat ttcatggaac gcagtaattt
     9061 cttagtggct attatcatgc taattcttag gtccctagcg attattcctg gctgattcgt
     9121 cagcttacgc catgagattg ttacattcct ttttatcctg gagatatggg ggaacgcagg
     9181 agatgatttt ttcatctaca ttcgttggta aatatagctt tggtcactac gacttaaacc
     9241 ttcctcaatc acagccattc gccgggcgat acggcaaaca aactaagtga aacatcatcc
     9301 tgaaaacacc aacatcaaca agcctctcca gatcgacttc agaagtgacc agttacaagc
     9361 cacaaaccag gaaacatatt tcatgatgag aattatgctc agcctgatgg cgggtaaaca
     9421 ctgattttca ccaagctcac tgagttagct tgcaaagctt cccttgttta gactccaaat
     9481 aaattattta taaaacaaac atttaaacaa agatctttag tttttgaaga ccaccgcaag
     9541 tgttcgtctg gcttcacatg gcatcttcct cttagaaaaa gatcgacata ttttgtgaca
     9601 cgaattgcaa atctggtttt gttgtatgga ttgcgtgatt tttgatctgg tataacaggt
     9661 ataaaggtgc accaagatag tcaatgagac agggcatctc gcaatctatg gcaaacatca
     9721 cttcagttct ttctcatcgg gtgatgaaaa cgcacttcag tctgaaagga atatgaaaat
     9781 gagatcaaca gacactctat tttatgactc tgggtaaaat ggattgagta agtgatatag
     9841 cttacgaaaa ttcaaatcaa ttaaacatca gaagagattt tatactcagg tatttaatct
     9901 ggatctctgt ttatttaaat aatgtgaaaa gagatttttc acaggagacc ttatacaaaa
     9961 aaatataaaa tacagctacc ggttgccaaa gacactataa gcctggcaaa aaatattaca
    10021 caacataaat gctaattgtt tatgcgggct ttgtattgct ttctgtatcc tacaaatgag
    10081 tgaaatttat gaaaaaggct aaaatacttt ctggcgtatt attactgtgc ttttcgtccc
    10141 cattaatttc tcaggctgcg acactggacg tacgtggtgg atatcgtagt ggaagccacg
    10201 cctatgagac tcgactcaaa gtcagtgagg gatggcaaaa tggatggtgg gcaagcatgg
    10261 aaagtaatac ctggaatacc attcatgata ataaaaagga aaatgccgca ctcaatgatg
    10321 ttcaggttga agttaattac gcgattaaac ttgatgatca atggacggtg cgcccgggaa
    10381 tgttaacgca ttttagcagc aacggcacac gctacggacc ctacgtaaaa ctgtcctggg
    10441 acgcgacaaa agatcttaat tttggcattc gctatcgtta cgactggaaa gcttaccgac
    10501 aacaagactt atccagtgat atgtctcgtg ataacgttca tcgttgggat ggatatgtca
    10561 cttaccatat taatagtgat ttcaccttcg catggcaaac gacgctatac agcaaacaga
    10621 acgattatcg ctatgcaaac cataagaaat gggcgacgga aaatgcattt gttctacaat
    10681 accatatgac gcccgatatt acgccataca tagaatatga ctaccttgac cgtcagggtg
    10741 tttacaacgg cagagataat ttatcggaaa acagttatcg cattggtgtg tcatttaaac
    10801 tgtagtagac aggagacagt cacaatgaat aaaacaataa cggcgcttgc tatcatgatg
    10861 gcttcatttg ccgcaaacgc gtctgtatta ccggaaactc ctgtgccatt taaaagtggt
    10921 accggagcaa ttgataacga cactgtctac attggtttag gtagcgcagg tacggcatgg
    10981 tacaagctgg atacacaggc caaagataaa aaatggacag cgttagctgc attccctggt
    11041 ggaccaagag atcaagcaac ctctgcattt attgatggca atctgtatgt gtttggcggc
    11101 attggcaaaa acagagaggg cttgactcag gtatttaatg acgtacacaa atacaacccc
    11161 aaaaccaata gctgggttaa attgatgtcg cacgcaccga tgggcatggc gggtcatgtg
    11221 acttttgtac acaacggcaa ggcttatgtt actggcggtg ttaaccagaa tatcttcaat
    11281 ggctattttg aagatctcaa cgaggctgga aaagattcaa ccgctgtaga taaaatcaat
    11341 gcctactatt ttgacaaaaa agcagaagat tatttcttca ataagtttct gttgtctttt
    11401 gatccctcaa cacagcaatg gagttacgct ggcgaatcgc cctggtacgg aacggctggt
    11461 gcggcggttg tgaataaagg tgataaaacc tggcttatta atggcgaagc caaacccgga
    11521 ttgcgaacgg atgccgtatt tgaacttgat ttcaccggta ataatttaaa atggaataag
    11581 cttgctcccg tctcatcacc agatggcgtc gctggcggtt ttgcggggat aagcaatgat
    11641 tctcttatat ttgccggagg ggccggattc aaaggttcac gagaaaatta ccagcacgga
    11701 aagaactatg cgcatgaagg cctgaaaaaa tcatatagca ctgatattca tctttggcat
    11761 aacgggaaat gggataaatc gggtgaatta tcgcaaggtc gggcctacgg agtatcattg
    11821 ccctggaata atagtctatt gattattggc ggtgaaactg caggcggcaa agcggtgacg
    11881 gattcagttt tgatctctgt gaaggataat aaagtcacag tacaaaacta acgcttcagg
    11941 gccccagtaa aggggccctg ctatcaattt atcatttcaa ttacgcgaaa attatatgga
    12001 cgcaataata tcgcccgatt attactatgt tcttaccatt gctggtcagt ctaatgctat
    12061 ggcgtatggc gaaggactgc cattaccggc cagggaagat gcgcctcatc ccagaattaa
    12121 acaattagcg agatttgcgc atacgcatcc cggaggcccg tcatgtcact ttaacgacat
    12181 tattccacta actcactgcc cacacgatgt tcaggatatg cagggttatc accatcctct
    12241 ggcaacgaat catcaaacac agtacggcac cgttggccag gcactgcata ttgcacggaa
    12301 attactgtcc tttattcctg ataacgcagg ggttctcatc gttccgtgtt gccgtggcgg
    12361 atcggctttt accgcgggca gcgaagggac atattcagaa cggcacggag ccagccatga
    12421 tgcttgtcgt tggggaacgg atactccgct ataccaggat ttagtcagca gaacgcgagc
    12481 cgcactggca aaaaatccgc agaacaaatt cctcggcgta tgctggatgc aaggcgaatt
    12541 tgacttaatg accagtgact acgcgtcaca ccctcaacac tttaatcata tggttgaagc
    12601 ctttcgtagg gatctaaaac aataccattc tcagcttaat aatattactg acgcgccgtg
    12661 gttttgcggc gataccacct ggtactggaa agaaaatttc cctcatgcgt atgaagctat
    12721 ttatggcaat tatcaaaata atgttttagc taatattatt ttcgtcgact tccagcaaca
    12781 aggtgaaaga ggactgacga acgcgcctga tgaagacccg gacgatttaa tcatgggata
    12841 ttacggttca gcgtaccgct caccggagaa ctggacgacg gcactgcgaa gcagtcattt
    12901 cagcgcggca gcccgtcggg ggattatttc tgacaggttt gtagaagcaa ttttgcagtt
    12961 ttggcgcgga aagtgagcgt tcattaattt gatttattcg catccatcaa cgcttttaac
    13021 tcctccggcg taaacggtgg tttgcgtcgg tgcaacatcg catggcaatt agggcacaca
    13081 agcagcaaaa aaacaaatga gatcaaggta atatatcttc acttgcaggc ttgaacagca
    13141 gaaaatttgc gagcatgatc gcaattattt cactgctagg gatatcaatg gcttccagta
    13201 aatcgctaca gcaggcaatt gccaatataa aaatctggca taagggtgaa cagcgcgcac
    13261 cgcataaacc attgttattg ctatacgtat tagcgggata cctgaatgga catccacgcc
    13321 ttttcgatta tggatcggaa atctacgaac ctctgcacag tttactggaa cgttttgggc
    13381 cacagcgttc acagtaccga cctgatatgc cgttctggcg attacaaggc gacggattct
    13441 ggcaattaca caatgccgag ctttgctcaa cagcagggag cagccgacaa ccgccagtga
    13501 aggaactgaa cgaataccac gttgcaggcg gtttcgatga acagcactac gccctggtaa
    13561 ccggcaataa aaaactcatc aatactctag cgcaacagat actcgaagcg cacttcaccg
    13621 agagtattca ggaagaaatt gctgacgagc tgggttttga tctccagcaa atccgtaaac
    13681 agcgcgaccc gttatttcgc aaaaatgtat tacgcgctta taactaccag tgcgcgatat
    13741 gtggctttaa tatgcgccac gacgacacca ccgtcgcgct ggaagcggcg catataaaat
    13801 ggaaacagca cggcggtcct tgtgaaattc ctaatggcct ggcgctttgc gcaattcacc
    13861 ataaagcctt tgataaagga tcgattggcc tggacgaaaa tatgcgggta ctggtatcag
    13921 atgcagtaaa cggcggaggg agcgttgaga gattattctg ggattttgac gggaaaatta
    13981 ttgcgttgcc gcaggtgcgt aaaaattacc cttatgaggg gtttgtggag tggcatcgga
    14041 atgaggtttt tagggggtga ggttgataac tatcgcagta tgttcaatat tgctgacata
    14101 atcagtgcag gatcttgccg ctagtttaca actcgccttc gatagcggcg caaaacgagt
    14161 tctgttgccg atatcctggg ctatggatat tccaacagtt ccggcagagt tgtttaccaa
    14221 gtttcaggta agtttttact cagaaccggt tgatgcggtt tataaggcgc tggatgtgaa
    14281 ttaacacatt cctcagctta tttacaaaag gattattccc atttgatata atatcagtgc
    14341 caatttactt ttttcaatgg aatatatctc ggctaaataa caataaaact tatcgctaat
    14401 ggattaaata aacaattttc taa
//
LOCUS       DAJVUY010000104        14397 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.104, whole genome shotgun sequence.
ACCESSION   DAJVUY010000104 DAJVUY010000000
VERSION     DAJVUY010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14397
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.104"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..1272)
                     /locus_tag="OQQ72_002802"
     CDS             complement(<1..1272)
                     /locus_tag="OQQ72_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS2012466.1"
                     /translation="MSTTTRKFKTIITDTGAKKLAQVAAPDGKPVRLTHMAVGDGGGT
                     LPTPDSKQTRLVHEVWRHTVNRVILDATHQNRIIAELVIPPETGGFWIREIGVFDEHG
                     DLIAVGNTAESYKPAVAEGSGRAQTFRTILTVSSTATVALTVDNTMVMATVDYVDDKL
                     KEHEQSRRHPDASLTAKGFVQLSSATNSVSETQAATPKAVKAAYDLANGKYTAQDAST
                     TRKGLVQLSSATNSTSETQAATPKAVKAAYDLANAKYTAQDATTAQKGIVQLSSATNS
                     TSETLAATSKAVKAVMDETNKKAPLNSPALTGTPTTPAARQGTNNTQIASTAFVMAAI
                     AALVDSSPDALNTLNELAAALGNAPNFATTMTNALAGKQPKDATLTALAGLATAADRF
                     PYFTGNDVASLATLTKVGRDILAKSTVAAVIE"
     gene            complement(1275..1805)
                     /locus_tag="OQQ72_002803"
     CDS             complement(1275..1805)
                     /locus_tag="OQQ72_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HCS2012467.1"
                     /translation="MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHL
                     LPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEW
                     WEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA
                     AAATYDGEVITIYPGD"
     gene            complement(1798..2694)
                     /locus_tag="OQQ72_002804"
     CDS             complement(1798..2694)
                     /locus_tag="OQQ72_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HCS2012468.1"
                     /translation="MPAVDLSQLPEPAIIAEPDFEAILADTKAMMIASYPAEQREAVS
                     AALELESEPLNVIAQTMSFREMLLRQRVNEGARACMLSHSAGTDLDNLAGNMNTKRLV
                     ITPATDTTDAVMESDTSLRLRAQRAYDGLSVAGPSGAYEYFARSASGLVRDARAISPS
                     PANVTVSILSTEGDGTATEALLNTVRAVLNAEDTRPVADRLTVQSARIVTWRLNAKLY
                     FYPGPESEPILAAAESSFRKWLAEQGLIGQDVALSAIAAALHVHGVQRVEIIEPTQNM
                     AISDIQAARCESFTISEGGRNE"
     gene            complement(2698..3027)
                     /locus_tag="OQQ72_002805"
     CDS             complement(2698..3027)
                     /locus_tag="OQQ72_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001705832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS2012469.1"
                     /translation="MNPDGTGNLNDMEHLKQSVRDILTTPLASRVMRREYGSLVPDLI
                     DEPMNNTTRLQCMSAAVIALTRWEPRIALDAIDVVWKAGGRAGVTLSGTVMQTMQNVE
                     LTITLRE"
     gene            complement(3045..3611)
                     /locus_tag="OQQ72_002806"
     CDS             complement(3045..3611)
                     /locus_tag="OQQ72_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS2012470.1"
                     /translation="MRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNTSRAGA
                     FNVWLPPSPGEQVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDGAVFRY
                     DADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNITHSGG
                     NFTSNGITVHTHKHGGVKGGSDSTGGPQ"
     gene            complement(3623..4258)
                     /locus_tag="OQQ72_002807"
     CDS             complement(3623..4258)
                     /locus_tag="OQQ72_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000356302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS2012471.1"
                     /translation="MDKAFTRVDETFEAIRDSLNQQAINNIARKLAQDLRRAQQARIR
                     PQKAPDGTAWTPRRRHVTRIQERIRFIWNNEARTLKNWHHDTGKYGRTITGWDEDKNS
                     IRTFYRDDIDRFLEIRTRRINQDSTKRVPMFVKLRTARYLKARADASGVTVGYSGVAA
                     RIARVHQFGERDQVAPGIFTDYPVRELLGISQADERLIYNTVLGRIAEAVR"
     gene            complement(4251..4718)
                     /locus_tag="OQQ72_002808"
     CDS             complement(4251..4718)
                     /locus_tag="OQQ72_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012472.1"
                     /translation="MLKTDSLREAMTRSCRWCQANPEKFTIFVESGNIETTGETPSFV
                     YRYQMVMFVMDYAGELDDLTLPLLAWLSENQPQLLLNPERNQDIKFSAVINDDDSADL
                     LFTLPLRERVRITRSSQGTPQAEHLLEPKPRLPSSEGDWSHVFQDVTWGESDG"
     gene            complement(4856..5263)
                     /locus_tag="OQQ72_002809"
     CDS             complement(4856..5263)
                     /locus_tag="OQQ72_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000780564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HCS2012473.1"
                     /translation="MKLWPTLGVAFLLTAGWGTSMRLSWSLGRENARNEAQASTLKST
                     ADTLNIISAGVQDMQQVLAQLRVENQQRNQDGEVRREQLRNDIAKDECAHALPDARFT
                     DRLRRHAERATASAVSPAYTADADHTGNASPLP"
     gene            complement(5260..5652)
                     /locus_tag="OQQ72_002810"
     CDS             complement(5260..5652)
                     /locus_tag="OQQ72_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000072320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HCS2012474.1"
                     /translation="MSNTFKFSSRSEKNLQGVNPDLVKVTRRALEISEVDFGITEGLR
                     SRYRQKQLVATGKSQTMNSRHLTGHAVDVVAYIGSQMSWEWPLYEKIAAAFRQASREL
                     NIPVEWGGDWKTLKDGPHFQLPHGAYPA"
     gene            complement(5649..5972)
                     /locus_tag="OQQ72_002811"
     CDS             complement(5649..5972)
                     /locus_tag="OQQ72_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS2012475.1"
                     /translation="MSTIQTGITEQVIAWLFDHLPTVYAVGAAVSISALMSLYDGRTL
                     VQTVTGSLACGVLAMAVAGSLRFFGFPEDAVTFIGASIGFMGAEKARDKVIAAFNRRV
                     KEKDE"
     gene            complement(5975..6175)
                     /locus_tag="OQQ72_002812"
     CDS             complement(5975..6175)
                     /locus_tag="OQQ72_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000864894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS2012476.1"
                     /translation="MKVKALEGDTVDSLCFRYYGTTQGVTEKVLDANPGLCQQVFLDA
                     GQEVEMPEPEKKKREMIQLWGE"
     gene            complement(6175..6669)
                     /locus_tag="OQQ72_002813"
     CDS             complement(6175..6669)
                     /locus_tag="OQQ72_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS2012477.1"
                     /translation="MTIVARTEPGPAEDDITDTDDGDTRISAGAFWPDIVLRELRLAV
                     RLPGRVTTSRLLHTATGAVAHVTRELEAWQQEQQAAGHQTLADVPAPVINGESVNLWH
                     WRNAVYTATRALILERYRDADTTDKGDRRADALDIQTSDLWRDVSWAISDILCRPRIF
                     AELC"
     gene            complement(6773..7573)
                     /locus_tag="OQQ72_002814"
     CDS             complement(6773..7573)
                     /locus_tag="OQQ72_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000632360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HCS2012478.1"
                     /translation="MITPAQQHWQNVMAQRAGRANEGVDHAARTAHEEVLYRLRLAQA
                     RLKGVQARSAKAAIKKELLPDFSGWIEGTLEADGGQQDEVIATLMVWAIDCGDLPLAL
                     RIGAYVVRHNLIMPDNFGRTAATVLTEEICNPVLTQAGTDADADLSAFIEPLDTLREI
                     VTDQDMPDEVRAKLCKACAFARRGLSDADSMALSLKLLREAMHLNPNAGVKREIATLS
                     RALKKADSAAEPEDASAQQAQDESSKSKKTTRKPATRKTTATQKAKRG"
     gene            complement(7619..8491)
                     /locus_tag="OQQ72_002815"
     CDS             complement(7619..8491)
                     /locus_tag="OQQ72_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005136493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HCS2012479.1"
                     /translation="MIGVTDQKGEKILLDTTGPIARTNTSYDGTKRRNPNNVVDLKNR
                     KYQCEQVNYDTFISYPQLDAWSAHPDFQSRISAQIARQVALDRIMIGFNGTSHADESN
                     FSTNKLLQDVNVGWLEHIRTDASERVMNDVTLTSRNMDNTVAHAGKYANADALVQDAR
                     SSLLDEWHKEADDLVVIMGRNLFNSLRLPVLNSISGQNPNAELLAGQLILSSRTIGGL
                     GVFLAPFFPDATMLITSFNNLSIYWQKGSMRRLMKDEPEYNRIATYQSINDAYVVEDY
                     GKCAMVTGLKFADS"
     gene            complement(8488..8670)
                     /locus_tag="OQQ72_002816"
     CDS             complement(8488..8670)
                     /locus_tag="OQQ72_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HCS2012480.1"
                     /translation="MNLVMSDITRNKLGCYMAQQVSLNNIPVSALVSRFTVEPAVQQR
                     FENASKESTEFTKKIT"
     gene            complement(8694..9530)
                     /locus_tag="OQQ72_002817"
     CDS             complement(8694..9530)
                     /locus_tag="OQQ72_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001262634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS2012481.1"
                     /translation="MANEKKTSRKKFRVAVSGSTVDGREISPVHLREAAENFNPDVYA
                     ARVNVEHYLSPCPSSEFSAMGDVTALSTEEITEGPLAGRTALYAEIEPTERMKQLVAD
                     GKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGE
                     APLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATS
                     QADIIDRFNVLETRHQQDRQKITSLTTELAALKEKLRTQDGDPQNRFTATGAASDQLA
                     DF"
     gene            9685..11436
                     /locus_tag="OQQ72_002818"
     CDS             9685..11436
                     /locus_tag="OQQ72_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HCS2012482.1"
                     /translation="MIQDAFVRQRARQLYWQGYPPAEISRLMGINPNTIYAWKKRDQW
                     DETPPGQRVTQSIDARLIQLTEKQNKTGGDFKEIDLLTRQLKKLHDGQPDVMAAGKKG
                     RAKKLKNHFTPEQIAALREKIISRLEWHQRGWFDSLTLCREAGIRNRMILKSRQIGAT
                     WYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDVELKGGDKI
                     ILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGLRRTYFS
                     TPSTETHEAYAYWNGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRTWRQIVTLEDVV
                     NHGWKHTDIDEIRDENTEDEFLNLYMCEFVREGESAFNLNILIGCGVDGYDDWKDWKP
                     FAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRRVQGLEFEEQ
                     ARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSSKRSLVLKMLQ
                     IMRAGRWEYDRAERELVAAFNAVRKVKTPGGFITYETDRARGISHGDLAWATMLAVIN
                     EPIGGEGENERFTVMEF"
     gene            11436..12482
                     /locus_tag="OQQ72_002819"
     CDS             11436..12482
                     /locus_tag="OQQ72_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS2012483.1"
                     /translation="MSRKNKKVRMSSRIDLADALRKESSLSAFTFDGPYRLTGHDLLD
                     NMYCADNGRWYETPVDWYGLARAARQTSWHQSALYFKRNVLLGCYIPHPLLSRQDFSA
                     LALDWFVFGNAFLELRSNMLGEPLKLRHALAKYMRRGSDLESWRYVQDGKDAFQFRPG
                     KVCHLMNPDINQEIYGMPEYLGALLSASLSHSADMFRKLYYDNGSHAGCIIYIGAAQV
                     NRESMDSLKETLQGARGGGAFKNVLIHAPNGGKEGVQILPFQQITAKDEFMNVKAASR
                     DDVLAAHRVPPQLMGAMPGEKSAFGDVEKAARVYAINELMPVMEAMKHINDWLGEEVI
                     RFNPYALLDIQPTS"
     gene            complement(12973..13563)
                     /locus_tag="OQQ72_002820"
     CDS             complement(12973..13563)
                     /locus_tag="OQQ72_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS2012484.1"
                     /translation="MSEINYQALRERYSPVPVPKCPICGEEMSIQRISGAQVVYACSG
                     YGDDGDFKIGRTLADEHYEKSRVTVLDVGDPEVLALLDWLETKDNRIAELEKIATDYA
                     LKFQKAQDALKHAALLHSRTAQQTNNFAVSLPDISEYFINDVFQPLRYERDVERAIIK
                     AGGKALWQEKHEDRTHQSCDVNCGWFSPLTTDKNNT"
     gene            complement(13627..13938)
                     /locus_tag="OQQ72_002821"
     CDS             complement(13627..13938)
                     /locus_tag="OQQ72_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012907691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid partitioning/stability family protein"
                     /protein_id="HCS2012485.1"
                     /translation="MTTPTRRISFYLKPTAVKNEGEACAWLDSLTPEARKSGQRVAFL
                     AGLALLKMNPAEAYRLAAWAGDEALSVTQTRTERPASQPVSTAQITSQMAGNIRALFP
                     E"
     gene            complement(13943..>14397)
                     /locus_tag="OQQ72_002822"
     CDS             complement(13943..>14397)
                     /locus_tag="OQQ72_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombinase"
                     /protein_id="HCS2012486.1"
                     /translation="LGGTTLDVAKVQGQLAGISQVFCDPHVGVSLMADAVLSVMATNG
                     MRTSHHIANTIIEHRHDEAWLRQHIHNDAHYASLMAVIREKEETLKQRVIRALAVFSG
                     YGRVMVVGGGAEIVAPAIREACGVNATFIADGVPQFALVNGLYAMDKE"
BASE COUNT         2922 a         4013 c         3970 g         3492 t
ORIGIN      
        1 ttcgataacg gcagcaacgg tcgatttcgc aagaatatcc cgcccgactt ttgtcagggt
       61 tgccaggctg gcgacatcat tccccgtaaa atacggaaac ctgtctgccg cagtagcaag
      121 cccggccagc gccgtcaggg tggcatcttt cggttgctta cccgcaagcg cgttagtcat
      181 ggtggtcgca aaattcgggg cgtttcccag cgccgccgct aactcgttca gcgtattcag
      241 tgcgtcaggt gacgaatcta caagggcggc aatcgcagcc ataacgaaag ccgtgcttgc
      301 gatttgggta ttattcgttc cctgtcgcgc agctggcgtt gttggcgttc cggtcagcgc
      361 aggactgttt aagggcgctt tcttgttcgt ttcatccatt accgccttaa ccgctttcga
      421 tgtcgcggcc agtgtttcag acgtgctgtt ggtggcacta ctgagctgga ctatcccttt
      481 ttgtgccgtc gtggcgtcct gagcggtata ttttgcgtta gcaaggtcat acgcggcctt
      541 tactgctttc ggcgttgcag cctgcgtttc agacgtgctg ttggtggcgc tactgagctg
      601 gacaaggcct tttcgcgtcg tgctggcatc ctgcgcagta tatttaccgt tagcaagatc
      661 atacgcggcc tttactgctt tcggtgttgc agcctgcgtt tcagacacgc tgttagtggc
      721 gctactgagt tgaacaaagc cttttgcggt cagcgaggcg tccgggtgac gtcgtgactg
      781 ttcatgctct ttcagtttgt catccacgta atccactgtg gccatcacca tggtgttgtc
      841 cacggtaagc gccacggtgg cagtgctgga tacggtcaga atggtgcgaa atgtttgtgc
      901 acgaccggac ccttcggcaa cggctggctt gtaactttcg gcagtatttc ccaccgcgat
      961 taaatcgccg tgctcatcaa atacaccaat ttcccggatc cagaatccgc ccgtttcagg
     1021 aggaataacc agctccgcaa taatgcggtt ctgatgtgtt gcgtccagga tgacgcgatt
     1081 aacagtatgt cgccacacct catgcaccag acgggtctgc ttactgtctg gtgtgggcaa
     1141 cgtgccgcca ccgtcgccca cggccatatg agtcaggcgg acaggcttac catctggcgc
     1201 ggctacctga gctaattttt ttgcacccgt atcggtgata atggttttaa attttcgtgt
     1261 tgtggtactc atgcttaatc gcctggataa atggtaataa cttcaccgtc ataagttgcc
     1321 gccgctgcga aaatatcccc cggaatttcc tgaatgatat tcagccctgt catgtggcgg
     1381 ctgaccgggc gggcatcagc aatcaaccgc tccatttcca gatacatttc ctccgtcacg
     1441 ccactgtcca gcgtgccgac ttcaacggta aatgttcccg gttctccgcc gaactcccac
     1501 cactcagaca cgcgaatgag gtatcccagc ggctcaatgg cccggcgcag tgcgctgatg
     1561 gtccctttgt gtcggtgtat cagccatgca tcacgaataa cctgtcgctt tgtctcttcc
     1621 ggccagttgc gatcccagcg gtcaacggaa aacgcccagg cgagataagg cagcagatgc
     1681 accgggcagg tgtccggcga ccacagcgtg ttgaggtcta ccggaatgtc tgtaatgcgt
     1741 gttccgacgg cttcggcaca acgcatgaaa ttgctggctg atggtggtaa caacgaatta
     1801 ctcattgcgt ccaccttcgc tgatggtgaa tgactcacag cgcgccgcct gtatgtcgct
     1861 gatggccata ttctgtgtgg gttcgattat ctccacgcgt tgcacaccgt gcacatgcag
     1921 tgcggcagca atggcggaca acgccacgtc ctgaccgata agcccctgct cagccagcca
     1981 cttcctgaac gacgattcag ccgcggccag aataggttcg gattccgggc cggggtaaaa
     2041 gtacagtttt gcattcagcc gccatgtcac gattctggca ctctgtacgg tcaggcggtc
     2101 ggccaccggg cgggtatcct ctgcattcag aacggcgcga acggtattaa gcaacgcctc
     2161 cgttgctgtg ccgtcgccct cagtggacag gatggaaacc gtcacgttgg ccggagacgg
     2221 gctgatggcc cgcgcatcgc gtaccagacc gctggcgctg cgtgcaaaat actcgtatgc
     2281 acctgacggg ccagcaacac tcagaccgtc atatgcccgt tgcgcccgta gtctcagcga
     2341 ggtgtcactt tccatcactg catcggtggt atccgttgcc ggagtgataa ccaggcgctt
     2401 tgtgttcata ttgcccgcga ggttgtccag gtctgtcccg gcgctgtggc ttagcatgca
     2461 ggcgcgtgca ccctcattga cccgctggcg taacagcatt tcacgaaacg acatggtttg
     2521 agcgataacg ttaaggggtt ccgattccag ctccagcgcg gcggaaacgg cttcacgctg
     2581 ttcggcggga taggacgcaa tcatcatggc ctttgtgtca gccagaattg cctcaaagtc
     2641 aggctccgcg atgatggcgg gttccggtaa ctgtgaaagg tcaacggcag gcatgattta
     2701 ctccctcagc gtgatggtta attcaacatt ctgcatggtc tgcatgacag tgcccgacag
     2761 cgtcaccccg gcgcggcctc ctgccttcca gacaacgtcg atagcgtcca gggcaatgcg
     2821 gggttcccat cgtgtcagcg caatcacggc agcactcatg cattgcagac gcgtggtgtt
     2881 attcatgggt tcgtcaatca aatcaggcac aaggctgcca tattcccgtc gcataacccg
     2941 gcttgccagc ggggtggtca ggatgtccct gactgactgt ttcaggtgct ccatatcgtt
     3001 caggtttccc gttccgtccg ggttcattcc tgtgtagcgg gttgtcactg cgggcctcct
     3061 gtcgaatcgc tgccaccttt aacgccaccg tgtttatgcg tatgcactgt gatgccgttt
     3121 gaggtgaaat tgccgccgct gtgcgtgata ttgccgctca tctttccccc ttttgtgacg
     3181 tcaagcgtcg ccgttctcag aaggtctgtg cattccacga cgggcgtatc cagtgtcacg
     3241 ctgacggatg cctgcagggt ggctgttttc atgccgctgg cgctcagtgc gcctgcgtcc
     3301 gcgtcgtagc ggaacaccgc gccatccggc gcgctgacca cgatttcttt caggcttttg
     3361 ccgggggccg gaatggcatc actccacagg ctgccaatta tcatggcggt ttccgggttg
     3421 ccgccaatgc aggcaattac cacctgttcg cctggtgatg gcggcagcca cacattgaag
     3481 gctcccgcgc gagaggtgtt ccagcgcagc caacctgttt ccagttcgcc gctgcgaacg
     3541 cgcacgcgcc aggacttctc atcaacttca gagatgatcc cggtgcggat gatattgctc
     3601 agtagccgca tgagttctgc gctcaccgta cagcctccgc aatccggccc agcaccgtgt
     3661 tataaatcag acgctcatct gcctggctga tacccagcag ctcacgtacc gggtaatcgg
     3721 tgaaaatgcc cggcgcaacc tgatcgcgct caccgaactg atgaacgcgt gcaatacgtg
     3781 cggccacgcc gctgtaaccc accgtcacac cggaagcatc tgcacgggct ttcaggtagc
     3841 gggcggtgcg cagttttacg aacatgggga cgcgctttgt gctgtcctgg ttgatgcgcc
     3901 gggtgcgtat ttccagaaag cggtcgatgt catcccggta aaacgtgcgg atgctgtttt
     3961 tatcctcatc ccacccggtg atggttcgcc cgtatttccc cgtgtcgtga tgccagtttt
     4021 tcagcgtgcg tgcttcgtta ttccagataa agcgaatgcg ctcctgtatc cgggttacgt
     4081 ggcgtctgcg tggtgtccat gcggtcccgt ccggcgcttt ctgtggccgg atacgtgcct
     4141 gctgggcgcg gcgtaaatcc tgtgccagct ttctggcgat gttattgatg gcctgctgat
     4201 tcaggctgtc gcggatggcc tcaaaggttt catccacgcg agtgaatgcc ttatccatcg
     4261 ctttcacccc acgtcacatc ctggaataca tgcgaccagt cgccttcgga agatggcagg
     4321 cggggttttg gctccagcag gtgttctgcc tgcggtgtgc cctgactgct gcgcgtgatg
     4381 cgaacgcgtt cccgcagggg gagcgtaaac aggagatcgg cgctgtcatc gtcattgata
     4441 acggcggaaa atttgatgtc ctgattacgc tcagggttga gcaacaactg tggctgattt
     4501 tcggataacc acgccagcag cggcagcgtg aggtcgtcca gctccccggc gtaatccatg
     4561 acaaacatca ccatctgata gcggtaaaca aacgatgggg tttctccggt cgtttcaatg
     4621 ttgccgctct ccacgaaaat ggtgaatttt tccgggttag cctgacacca tcggcatgaa
     4681 cgggtcatgg cttcacgcag ggaatcagtt ttcagcatgg ttgttatcct cgttgttcag
     4741 tcgttgcagc ctgcgctgtt ccagtaattc aatggcccgt ttatccgcgt tacaggtttc
     4801 cagtgcatcc agaaggcggt cgccccatat accgagattt ccccatgtgg gagtgtcagg
     4861 gaagggggga ggcgttaccg gtatggtcag cgtctgcggt ataagccgga ctgacggcgc
     4921 tggcagtggc gcgttctgcg tgcctgcgca gcctgtcagt aaaacgagcg tcaggcaaag
     4981 cgtgggcgca ttcatctttt gcaatatcgt tgcgtagctg ttcacgtctt acctctccgt
     5041 cctgattgcg ttgctgattt tccacgcgga gttgcgccag cacctgctgc atatcctgta
     5101 ccccggcgct gatgatattc agggtgtcgg cggtactttt cagggtgctg gcctgcgctt
     5161 cgtttctggc gttctcccgg cccagcgacc acgacagacg catggatgtt ccccatccgg
     5221 cagtcagaag gaaagcgacg ccaagcgtgg gccagagctt catgccggat aggctccgtg
     5281 tggtaactga aaatgcggtc cgtctttcag ggtcttccag tcgccgcccc attccaccgg
     5341 aatattcagt tcccggctgg cctgtctgaa tgctgctgcg attttttcgt acagcggcca
     5401 ttcccatgac atctggctgc cgatataagc cacaacatcc acggcatgcc ccgtaaggtg
     5461 gcggctgttc atggtctggc tcttacccgt ggccaccagt tgcttctggc ggtaacggct
     5521 gcgcaaccct tcggtgatac caaaatccac ttccgagatt tccagtgccc gtcgggtcac
     5581 tttcaccaga tcaggattta caccctgcaa attcttttcg ctccggctgc tgaatttaaa
     5641 tgtgttgctc attcgtcctt ctccttcacc ctgcgattaa aggccgcaat aaccttgtcg
     5701 cgtgctttct ctgcacccat aaaaccgatt gatgcgccga taaacgtcac ggcatcttca
     5761 ggaaacccga agaagcgcaa cgacccggcc acggccatgg caagaacgcc gcacgccagc
     5821 gatcccgtta cggtctgaac cagtgttcgt ccgtcataaa ggctcatcag cgcggaaatg
     5881 ctgaccgccg cgcctactgc atacaccgtt ggcaggtggt caaagagcca cgcaataacc
     5941 tgctctgtga tccctgtttg aatggtgctc actgctactc cccccacaac tgaatcattt
     6001 ctcgtttctt cttctccggc tccggcatct ccacttcctg cccggcgtcc agaaatacct
     6061 gctgacagag tccggggttg gcatccagca ccttttcggt gacgccctgc gtcgtgccgt
     6121 agtaccggaa acagagcgaa tccacggtgt cgccttccag tgccttcact ttcatcagca
     6181 caactccgca aagattcgcg ggcggcacag aatgtcagag atggcccagc tcacatcacg
     6241 ccacaaatcc gatgtctgta tatccagagc gtctgcccgg cggtcgccct tgtccgtagt
     6301 gtctgcatca cgataacgct ccagaatcag ggcgcgcgtg gcggtataaa cagcattgcg
     6361 ccagtgccag agattgacgc tttctccgtt aattacgggt gccggaacat cggccagcgt
     6421 ctgatggcca gctgcctgct gttcctgctg ccatgcttcc agctcgcggg taacgtgtgc
     6481 cacagccccg gtggcagtat gcagcaggcg ggaggtggtc acgcgccccg gcagtcgtac
     6541 cgccagacgc agctcgcgca gcacaatatc cggccagaat gcacccgctg aaatgcgggt
     6601 atcgccatca tcggtatcgg tgatgtcgtc ctctgcgggt ccgggttcag ttctggcaac
     6661 tatagtcatg gggttcactc ctgaaaaaaa atcgggcggt gggtgcgcgg tgtaaacggt
     6721 cacggagtca aactggaaca ccgcgcacgc cgcccgctga cggggtcagt cgttaaccgc
     6781 gcttcgcctt ctgcgtcgcg gtggtttttc gtgttgcagg cttccgcgtt gtctttttac
     6841 ttttgctgct ttcgtcctgc gcctgctgtg cgctggcgtc ttctggttcg gctgcggaat
     6901 cggctttttt cagggcgcgg gaaagggttg caatctcgcg tttcacacct gcgttcgggt
     6961 tcaggtgcat tgcttcgcgc agcagcttca gtgacagggc catgctgtcc gcatcactca
     7021 ggccacggcg ggcaaaggcg cacgctttgc ataatttggc gcgcacttcg tccggcatgt
     7081 cctggtcggt gacaatctcc cggagggtgt ccagtggttc gataaaggcg gacaaatccg
     7141 cgtcggcatc cgtcccggcc tgcgtcagta ccggattaca gatttcttcg gtcagtaccg
     7201 tggcagcagt acggccaaag ttatccggca tgatgaggtt gtgacggact acatacgcgc
     7261 cgatacgcag cgcaagcgga agatcgccac agtcaatcgc ccacaccatc agcgtggcaa
     7321 tcacttcatc ctgctgcccg ccgtcagcct ccagcgttcc ctcaatccag ccggaaaaat
     7381 ccggcaacaa ctcttttttg atggcggctt tcgcgcttct ggcctgtacg cccttaagcc
     7441 gggcctgtgc cagacgcaga cgatacagca cctcttcatg cgcggtacgc gcggcgtggt
     7501 ccacgccttc attcgcccgg cctgcgcgct gtgccatcac gttctgccag tgttgttgtg
     7561 caggagtaat catttttgct ctccgttaca ggcgggcatg atgcccgccg tgagttgatt
     7621 agctgtcggc gaacttcagg ccagtaacca tcgcgcactt gccatagtct tcaacgacat
     7681 aagcgtcatt gatggactgg taggtggcga tgcggttgta ttccggctcg tctttcatca
     7741 ggcgacgcat tgaacctttc tgccagtaaa tcgacaggtt gttgaacgag gtgatcagca
     7801 tcgttgcatc cgggaagaac ggcgcaagga acacgcccag cccgccaatg gtgcgcgatg
     7861 acaggatgag ctgcccggcg agtaattccg cattgggatt ctggccgctg atgctgttca
     7921 gcacgggcag acgcagcgag ttaaacaggt tgcgccccat aatcaccacg aggtcgtcag
     7981 cttccttgtg ccattcatcc agcagggatg aacgcgcgtc ctgtaccagt gcatcagcgt
     8041 tcgcatactt acccgcgtgc gccacggtgt tgtccatgtt gcgggaggtc agcgtcacgt
     8101 cattcataac gcgttcgctg gcgtcggttc tgatgtgctc cagccagccc acgttaacgt
     8161 cctgaagcag cttgttggtg ctgaagttgg actcatccgc gtgagacgtg ccgttgaaac
     8221 cgatcatgat gcggtcaagc gccacctgtc gggcaatctg tgcgctgatg cgggactgaa
     8281 aatcagggtg tgccgaccag gcatcaagct gcggatacga aataaacgtg tcgtagttca
     8341 cctgttcaca ctgatatttg cggtttttca gatcaaccac gttattcggg ttacggcgtt
     8401 ttgtgccgtc ataactggta ttcgtgcgcg caatcggtcc tgtggtatcc aggaggattt
     8461 tttcgccttt ctggtcggtc acgccgatca cgttattttt ttcgtaaatt cggtactttc
     8521 ctttgaggcg ttttcaaaac gctgctgcac cgcgggttcc acggtaaatc gcgacaccag
     8581 tgcagatacc gggatattat taagcgacac ctgctgcgcc atatagcaac ccagcttgtt
     8641 gcgggtaata tctgacatca ccagattcat aaaaaatttg ctcctttgtc taatcagaag
     8701 tcggccagct ggtcggaggc tgcgcccgtt gcggtgaagc ggttctgcgg atcgccgtcc
     8761 tgcgtgcgca gtttttcctt cagtgctgcc agctctgtgg tcagtgacgt aattttctgg
     8821 cggtcctgct gatggcgggt ttccagcaca ttaaaacggt cgataatgtc ggcctgtgac
     8881 gttgcgacgc cttccaccgc ttcctgaata cgggaaaaac tggcgtcatc cgctttgcgg
     8941 ccacggccaa taatccccat tacgcggtta aaccactggg tgccttcttc ctggcgttgt
     9001 tctgccattt cgatgatttc agactcgatg gcttcggaga taagcggcgc ttcaccctgg
     9061 atactgttaa acgtcatcac cgcctgacgt tgctgtgccg tgaatttcag gcgctcagtg
     9121 cccaggcttg ccggggtgtc ggtcatcgcc agcccgacca gataggcgcg cccgttaacg
     9181 gagaactgcg ggtgcagttc gatactggaa tagattttct tgccgtccgc aacaagctgc
     9241 ttcatgcgct cggtcggttc gatttctgca tacagcgcag tacgtccggc cagcggacct
     9301 tccgtaatct cttccgtact cagtgcggtg acatcgccca ttgcggaaaa ttcgcttgac
     9361 gggcatggcg agagatagtg ctcaacgttc acgcgggcag cgtaaacatc cgggttgaag
     9421 ttctcggcgg cttcacgcag atgcaccgga ctgatttcac ggccatcaac agttgatccg
     9481 gagacagcca cgcgaaactt tttgcgggat gtcttttttt cattagccat agtttttgcc
     9541 cctctgactg gttcttcagt catgatggca aagcgtaaca ggctgataca aagggctttt
     9601 gttgtaagaa aacggccaga acagagggtt aaggagaaca gtttcgcgcg cgggtaatct
     9661 tcctgtaatt actcaggggg agcaatgatt caggacgctt ttgtgcgcca gcgtgcgcgg
     9721 caactttact ggcagggtta tccgcccgca gaaatatcac gtctgatggg aataaacccg
     9781 aacacgattt atgcgtggaa aaaacgtgac cagtgggatg aaacgccacc cgggcagcgt
     9841 gtcacgcagt ccatcgatgc gcgcctcatc cagcttactg aaaaacagaa taaaacaggc
     9901 ggtgacttta aggaaataga cctgctgacc cggcagctta aaaagctgca tgatggccag
     9961 ccggatgtga tggccgcagg aaagaaaggc cgggcgaaaa aactcaaaaa tcatttcacg
    10021 ccggaacaga ttgccgcact gcgggaaaaa atcatcagca ggctggagtg gcatcagcgg
    10081 ggctggtttg actccctgac cctttgcagg gaagccggga tacgtaacag gatgatcctg
    10141 aaatcccgac agattggggc gacctggtat tttgcacagg aagcactgct gatggcgctg
    10201 cgtgacgatg tggcgcaacc ttaccagcgt aaccagattt ttttgtctgc gtcgcgtcgt
    10261 caggcgttcc agtttaaaag cattattcag aaggccgcgg ctgaagttga tgtggagctg
    10321 aaagggggcg ataaaatcat cctctccaac ggcgcagagc tgcattttct cggcacttct
    10381 gctgcgtcgg cacagtccta tacgggcaat ttttattttg atgaattttt ctgggtcagt
    10441 cgctttgctg aactgcgcaa ggtggctggc gctatggcaa ccctcagcgg actgcggcgc
    10501 acctacttct ccacgccatc caccgaaacg cacgaggcat acgcctactg gaacggcgac
    10561 cgctggaacg agaaaaaggc ctcgcataaa cgccagcgtt tttctgtgga ctggaaaacg
    10621 ctgcataacg ggcttatctg ccctgaccgg acgtggcggc aaattgtcac gctggaagat
    10681 gtggttaatc acggctggaa acacaccgat atcgacgaaa ttcgtgatga aaacaccgaa
    10741 gacgagttcc tcaatctcta tatgtgtgag tttgtccgcg aaggggaatc ggcatttaac
    10801 ctgaatatcc tgattggctg cggcgttgac ggatacgacg actggaaaga ctggaaacct
    10861 tttgctcccc gcccgatggg gaatcgtccg gtatggattg ggtatgacgc aaacggcagc
    10921 agtggcaacg gcgacagcgg cgctgtgtcc gtggtggttc ctccgtctgt tcctggtggc
    10981 cgttttcgaa cggtggagac gcgacgcgtt caggggctgg agtttgaaga acaggccaga
    11041 gtcattgaag agttcacgtg tcgctacaac gtggaacaca tcggcattga tgtgacgggc
    11101 gggaacgggg aggctgttta tcagatagtg aaacggtttt tccctgccgc tattccgtac
    11161 accttcacgc tgtcatcaaa acggtcgctg gtactgaaaa tgctgcaaat aatgcgtgcc
    11221 gggcggtggg aatacgatcg cgccgaacgc gagctggtcg cggcctttaa cgccgtgcgt
    11281 aaggtgaaaa caccgggcgg ctttatcact tacgaaacgg accgagcgag ggggatcagc
    11341 cacggcgacc ttgcgtgggc aaccatgctt gctgtcatta acgaaccgat tggcggcgaa
    11401 ggagaaaacg agcgtttcac ggttatggag ttctgatgag cagaaaaaat aaaaaagtgc
    11461 gcatgagttc acgcattgat ctcgctgatg cgctcaggaa agaatcatcg ctcagtgcat
    11521 tcacatttga tggtccttat cgcctgaccg ggcatgacct gctggacaat atgtactgtg
    11581 ctgataacgg gcggtggtat gaaaccccgg tggactggta cggtctggca agagctgccc
    11641 ggcaaacgtc ctggcatcag tctgcgcttt attttaagcg caatgtattg ctcggttgct
    11701 acatcccgca cccgctgctt tcccggcagg atttctcggc gctggcgctg gactggtttg
    11761 tgttcggtaa cgcattcctt gagcttcgaa gcaatatgct cggcgaaccg cttaaattac
    11821 ggcacgccct ggcgaaatac atgcgacgcg gaagcgatct tgaatcatgg aggtatgtgc
    11881 aggatggcaa ggatgcgttt cagtttcgcc caggcaaagt gtgtcacctg atgaatcctg
    11941 acattaacca ggaaatctac ggcatgccgg aatatctcgg cgcattactc tcggccagcc
    12001 tgtctcattc ggcggacatg ttcagaaaac tgtattacga caacggatcc cacgccgggt
    12061 gcatcatcta catcggtgcc gcgcaggtaa accgcgaaag catggactcc ctgaaagaaa
    12121 cgctacaggg tgcgcgtggt ggtggtgcgt ttaaaaacgt gctcattcat gcgcccaacg
    12181 ggggcaaaga gggggtgcaa attttgccgt tccagcagat caccgcaaag gatgagttca
    12241 tgaatgttaa ggcggcatcc cgtgatgatg tgctggctgc gcaccgcgtt ccgccgcaac
    12301 tgatgggggc gatgccgggt gaaaaaagtg cgtttggtga tgtggagaag gccgcgcggg
    12361 tttacgcaat taacgagctg atgcccgtca tggaggccat gaagcacatc aatgactggc
    12421 ttggcgaaga ggtgatccgc tttaaccctt acgcactgtt agacatccag cccacatcct
    12481 gacgcgcttc gcttgtctgc tgcttcgccg gggcataaaa aatttatgcc ccgactctcc
    12541 agctcctgta tcagtcagat aatttcacga cgccttccag tttatcgcca ccatcgacgg
    12601 tcagactctt acgcaatccc accgcgttga ctgcatgttc tcgccgcctc agtgcgattt
    12661 tgacggcctt acctttcacc ccatcaaatc agaatccctc acgtattttt cacgctcagc
    12721 gtgagaaata cggccattct gtcgtgtcgc tgcgacatcg ttaagggaac gctatttacc
    12781 ccctgaaacg cgggctgttc ccccgtcacc tgcgcgcaga aaaagcgcgt ttttttgtgc
    12841 acgcacggat ccttgacgga tccagccgcc acgcgggctg gaagggcaaa aattcgttca
    12901 aaaaaattgt gcaaatttgt gcactattgt gcagcagggc gatgtgcgat tatcgccctg
    12961 gtttgagggg gatcaggtgt tatttttatc tgtcgtcagt gggctaaacc atccacaatt
    13021 tacatcgcat gactgatgcg ttctgtcctc gtgtttctcc tgccacaatg cttttccgcc
    13081 agcctttatg atggctcttt caacatcccg ctcgtatcgc aagggctgaa atacgtcatt
    13141 aatgaaatat tcgcttatgt ccggaagcga tactgcaaaa ttatttgttt gttgcgccgt
    13201 cctgctatgc agcaaagcgg catgctttaa tgcgtcctgt gctttctgga atttaagtgc
    13261 atagtcagtg gcgatttttt ccagttcagc gattcggttg tctttggttt ccagccaatc
    13321 aagtagcgcc aatacttcag gatccccgac atccaacact gttacgcgtg atttttcata
    13381 atgttcgtca gcaagagttc ggccaatttt gaaatctcca tcatcaccat aaccggagca
    13441 ggcataaaca acctgtgctc cagatattcg ctgaattgac atttcctcgc cgcaaatagg
    13501 gcatttcggt actggcacag gtgaataacg ttcacgtaat gcctgatagt tgatttcgct
    13561 cattaagtcg ttctccttgt ttatgttctg aggtggagag cagggcgaac tcgccctgat
    13621 gttgtgttat tcaggaaata acgcccggat atttccggcc atctgactgg ttatctgtgc
    13681 ggttgatact ggctgtgatg cggggcgttc tgtcctggtt tgtgtcactg ataacgcttc
    13741 atcaccagcc catgcagcca gtcgataagc ctctgccgga ttcattttca gaagtgccag
    13801 cccggccaga aaagccacgc gttggccgct tttgcgggct tctggtgtaa ggctgtccag
    13861 ccaggcgcat gcttctcctt cgttcttgac ggcggtgggc ttcagataga aacttatccg
    13921 tctggttgga gtcgtcattg gtttactcct tgtccattgc gtacagccca ttaaccagag
    13981 caaactgtgg caccccgtcc gcgatgaaag tcgcattaac tccgcaggct tcgcggatag
    14041 cgggtgccac aatctccgcc cctccaccga caaccatcac ccgcccgtaa cccgaaaaaa
    14101 ccgccagcgc gcggatcacg cgttgtttca gtgtttcttc cttttcacga attaccgcca
    14161 tcaggctggc gtaatgcgcg tcattgtgga tgtgctggcg cagccaggct tcatcatggc
    14221 gatgttcgat aatggtattg gcgatgtggt gactggtgcg cataccgtta gtggccatca
    14281 ccgacagtac ggcatcggcc atcagagaaa cgcccacgtg tggatcgcaa aacacctggc
    14341 tgatacctgc cagttgcccc tgaacctttg ccacatccag cgtggttccg cccaaat
//
LOCUS       DAJVUY010000105        14225 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.105, whole genome shotgun sequence.
ACCESSION   DAJVUY010000105 DAJVUY010000000
VERSION     DAJVUY010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14225
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.105"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            505..1329
                     /gene="gadX"
                     /locus_tag="OQQ72_002823"
     CDS             505..1329
                     /gene="gadX"
                     /locus_tag="OQQ72_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HCS2012487.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ72_002824"
     CDS             1697..2425
                     /gene="gadW"
                     /locus_tag="OQQ72_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HCS2012488.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSLGTFS"
     gene            complement(2788..5901)
                     /locus_tag="OQQ72_002825"
     CDS             complement(2788..5901)
                     /locus_tag="OQQ72_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS2012489.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ72_002826"
     CDS             complement(5926..7083)
                     /gene="mdtE"
                     /locus_tag="OQQ72_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HCS2012490.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDQWVVTSGLQAVDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7143..7421
                     /locus_tag="OQQ72_002827"
     CDS             7143..7421
                     /locus_tag="OQQ72_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012491.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ72_002828"
     CDS             complement(7422..7949)
                     /gene="gadE"
                     /locus_tag="OQQ72_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HCS2012492.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ72_002829"
     CDS             complement(8748..9320)
                     /gene="hdeD"
                     /locus_tag="OQQ72_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HCS2012493.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ72_002830"
     CDS             9575..9907
                     /gene="hdeA"
                     /locus_tag="OQQ72_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HCS2012494.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE
                     WDKIKKDM"
     gene            10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ72_002831"
     CDS             10023..10349
                     /gene="hdeB"
                     /locus_tag="OQQ72_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HCS2012495.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10413..11060
                     /locus_tag="OQQ72_002832"
                     /pseudo
     CDS             10413..11060
                     /locus_tag="OQQ72_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
     gene            complement(11102..11632)
                     /locus_tag="OQQ72_002833"
     CDS             complement(11102..11632)
                     /locus_tag="OQQ72_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2012496.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ72_002834"
     CDS             complement(11788..12354)
                     /gene="slp"
                     /locus_tag="OQQ72_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HCS2012497.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(12709..13826)
                     /locus_tag="OQQ72_002835"
                     /pseudo
     CDS             complement(12709..13826)
                     /locus_tag="OQQ72_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312403.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3950 a         3019 c         3155 g         4101 t
ORIGIN      
        1 attatgtgtc gtcgcggctt cgaaatggac tttgctgaac tgttgctgga agactacaaa
       61 gcctccctga aatatctcag cgatcacccg aaactgcagg gtattgccca gcagaacagc
      121 tttaaacaca cctgataaca taacgttgta aaaaccgaat gcccagcctt taaaaaaaca
      181 gctgggcatt cggttgctta ttaatcgcaa taatatattg gctgtctatt catcgtgttg
      241 ataagatata tgttatatga atgtttatta aatgtagcga ttgcctttaa tgtcacgaaa
      301 agggattatt tgcttgctat taatttcact gcgttcttaa acgcgttttt gtattataaa
      361 tccagtcatc ctgcccgtag aacatcacac attatcatcc tgttctcccg cttcgtttaa
      421 atttatttat caatcaattt gacttaagag ggcggcgtgc tacattaatt aacagtaata
      481 tgtttatgta atattaagtc aactatgcaa tcattacatg ggaattgtct aattgcgtac
      541 gcaagacata aatatattct caccatggtt aatggtgaat atcgctattt taatggtggt
      601 gacctggttt ttgcggatgc aagccaaatt cgagtagata agtgtgttga aaattttgta
      661 ttagtatcaa gggatacgct ttcattattt ctgccgatgc tcaaggagga ggcattaaat
      721 cttcatgcac ataaaaaaat ttcttcatta ctcgttcatc actgtagcag agatattcct
      781 gtttttcagg aagttgcgca actatcgcag aataagaatc ttcgctatgc agaaatgcta
      841 cgtaaaagag cattaatctt tgcgttgtta tctgtttttc ttgaggatga gcactttata
      901 ccgctgcttt tgaacgtttt gcaaccgaac atgcgaacaa gagtttgtac ggttatcaat
      961 aataatatcg cccatgagtg gacactagcc cgaatcgcca gcgagctgtt gatgagtcca
     1021 agcctgttaa agaaaaaatt gcgcgaagaa gagacatcat attcacagtt gcttactgag
     1081 tgtagaatgc aacgtgcttt gcaacttatt gttatacatg gcttttcaat taagcgagtc
     1141 gcagtgtcct gtggatatca cagcgtgtcg tatttcattt acgtctttcg aaattattat
     1201 gggatgacgc ccacagagta tcaggagcga tcggcgcagg gattgccgaa ccgtgactcg
     1261 gcggcaagta ttgttgcgca aggaaatttt tacggcactg accgttctgc ggaaggaata
     1321 agattataga attttactca gacataaaaa aaacctggca taggggaccg ggaagaggat
     1381 agtctgccgt ctccagacta ataaaccgct ataacactcc ctgttggcac gggaaacttt
     1441 gtgctctcag taagttaaat ataactttta ctggaaataa gatcagccat ttttttataa
     1501 acataagcta tacgctgtgc gaaaatatat tcgtgctgca tttacttatt atcaattaac
     1561 tgttatgcaa aactactttg tggataaatt ttggtcctgc caaatctggc agtttttgcg
     1621 ctaagaaaca gtctggcaac atttcattag tatactgaaa ttgaaataat cgcagtatga
     1681 aatataaggg ataatcatga ctcatgtctg ctcggtgatc ctcattcgtc gttcattcga
     1741 tatttatcat gaacagcata aaatatcgct gcataacgag agtatcgtgc tgctggagaa
     1801 aaatttggca gacgattttg cgttttgttc accggatacg cgacgactgg atatcgatga
     1861 gctgacagtt tgccattact tacaaaatat tcgtcagcta ccacgcaatt tagggttaca
     1921 tagcaaagac cgtctattaa ttaaccagtc accccccatg ccgctggtga cggcgatttt
     1981 tgatagcttc aatgaatccg gggtaaattc accgatactg agcaatatgc tctacctttc
     2041 ctgtttatcg atgttttctc ataagaaaga actgatcccc ttacttttca atagcatcag
     2101 cactgtttca ggaaaagttg aacgccttat tagctttgat atcgccaaac gttggtatct
     2161 gcgcgatatc gcggaaagaa tgtataccag cgagagtctc atcaaaaaaa agttgcagga
     2221 tgaaaatacc tgtttcagta aaatattact cgcttccagg atgtcgatgg ccagacgatt
     2281 actcgagtta cgtcaaattc ctctgcatac tattgcagaa aaatgtggct atagcagtac
     2341 gtcgtacttt ataaacacat ttcgacaata ttatggtgta acgccacatc agtttgcgca
     2401 acattcgcta ggtacctttt cctgacatat tttgcatttg aatattggtc aggatctcac
     2461 acctgcttca tgtgaaactc ttccctgatg atttctgccg ggctaccggc tagttctctt
     2521 tcgcagtttg ccaggcggta taggtatttt caggaggaaa agactcggca tgtttgggat
     2581 tattaagctg acaattcata cgattacggg aatgtgggtc agtattgtgc tgttcaaatt
     2641 gatgacgaat ggctggagtg gtttctactt tcagtgctgt gtactaagcc tggtattcct
     2701 gacggttagc tggttgttga gtggtgaatg gttagcagga aagagtaagg ctgaaccttc
     2761 acgttcaacc ttactctcat ttacacgtta cgctttttta aagcgggcaa agagatgttc
     2821 cactacaacg aaaaagaccg gaacgaagta aattgccagc actgttgcgg caaacatccc
     2881 gcccatcacg ccggtaccta ccgcgttttg cgcgccagaa ccggcaccat gactgataac
     2941 cagcggcagc acgccgagaa taaaggccag agaggtcatc aggattgggc gtaaacgcat
     3001 ccgcgccgct tcgatgattg cccctatcgg cgttttccct tctttctgca tcatctcaac
     3061 ggcaaattcg acaatcagga tggcgttctt ggcggaaagc ccgatggtgg tcagcaaacc
     3121 aacctggaag tagacgtcat tacttaagcc gcgcagatcg gtggccagta atgcgccaac
     3181 gacgcctaac ggaacaacca acatcaccga gaacggaatt gaccagctct catagagtgc
     3241 ggcgagggcg aggaacacca cgaccagtga aatggcatac agtgcaggag cctggtttga
     3301 ggataacgct tcctgatacg acagtccggt ccatgagtag ccgacgcctg ccggaagttt
     3361 agcgaccagg tctgccataa atttcatagc gtcaccggta cttttcccgg ccgccgcttc
     3421 acctaaaatc tccattgacg ggatgccgtt gtagcgttcc aatcgcggtg aaccataggt
     3481 ccattcggta gacgagtagg cagaaagcgg tgccatcgtg ccagaggcgt tgcgtacata
     3541 ccattggttg atgttatccg gcaacatacg gaacggcgtg cctgcctgga catacacttt
     3601 tttcacccgc ccctggttga ggaagtcgtt cacgtagctg ctgccgaagg cggtggaaat
     3661 tgtctggttg atatcagaca gcgccacacc cattgcctca gctttcgcgg cgttgacgtt
     3721 cactttgaac atcggcgtat cttccaggcc gttcgggcgt accccggtga cctggtcagg
     3781 cgattgcgct gccagtgata acagctcgtt tcgtgcctgg gttagttttt cgtgccccag
     3841 gttaccgttg tccagcagtt ccatatcaaa acctgacgcg gtacccagtt cagccaccgc
     3901 gggtaagttg aacgggaaga cgacggcttt attgatactg cttaacgcaa tcattgcccg
     3961 ctgaatgatc gcggtaaccg agttttcctc accgacacgt tcagaccacg gcttgagact
     4021 gataaacgcc aggccgttgt tttgcccctg gccgctgaag ccaaagccgc caacggtaaa
     4081 caccgactga acattatctt tctcttttgt aagataataa tccgtcacct gttgcagcac
     4141 tttcgtggtg ttaaccatgg tggcaccgga aggtaactgc gcggtggtca taaatacccc
     4201 ctgatcctct tctggtaaga aagaggtcgg tgtacgcagg aacagcaccg ccatcccggc
     4261 gcaaatcagc aggtagacca ccatgtagcg accggtacaa cgcaacagcg agcgggtgct
     4321 atcggtatag tgctgagttg atttttcaaa cagcgtgttg aagcgtgcga acagggcgtt
     4381 aggtttgtga ccgccttccg gcgcggcttt cagaatggtg gcgcacaggg caggggtcag
     4441 gctcattgcc acaaatactg aaagcagcat ggaggagatc agcgtgatgg agaactggcg
     4501 gtagatctcc ccggttgcgc cgctcataaa ggccatcggc ataaacactg cggaaagaac
     4561 aacagcaata ccgaccagcg cacgttggat ctgccccatc gatttatgcg tcgcttcctt
     4621 cggtggtagc ttatcttccg caatgacacg ctcgacgttc tccaccacca cgatggcgtc
     4681 atccaccagt aaccctatcg ccagcaccat cccgaacata gttaacgtgt tgatggtgaa
     4741 accgaccgcc gacaagatcg caaacgtccc gagaataacc accggtacgg caatcgtcgg
     4801 gatgattgtg gcacggaaat tctgcaaaaa cagatacatg accaggaaga cgaggatgat
     4861 agcctcaacc agtgttttaa aaacttcctg aatagaaatt tcgataaacg gcgtggtgtc
     4921 gtaaggataa accgtcttca gacttgcggg gaaataggct gataagcggt tcagctcctc
     4981 tttgactgcc cgcgaggtat ccagggcgtt tgctccggta gccagtttga tggcgatccc
     5041 ggcagcaggt ttgccgttat agcgcgccac ggtggaataa tcttccgctc caagttcgac
     5101 gcgggcgaca tcacgcagca gcacttgcga accatcttgc tgaactttca acaggatttt
     5161 gccaaattct tccggcgttt gcagacgcgt ctgcacaatg atcgaggcgt ttagttgctg
     5221 gtctgccgcc tgtggcatgc cacccagttg accaccggaa atctggttgt tttgcacctt
     5281 aatctgggaa ataacatcgg aaggtaccag attgtattta ttgagttttt gcgggtccag
     5341 ccagatacgc atggcgtact cggaaccaaa gagctgtacg ctaccaacgc ccgcggtacg
     5401 gcttagcggg tctttgatat tagacgctac atagtccgcg atatcgtact ggttgaggct
     5461 gccgttatca gaaataaacg ccgctaccat cagaatatta ctgctcgact tatcaacgct
     5521 aatcccctgc tgctgcaccg cttcaggtaa tgaaggcata gcgagttgca gtttattttg
     5581 cacctgaacc tgtgcgatat caggagatgt cccagtctcg aaggtcagag tgatagaggc
     5641 attacccgcc gcatcactgg ttgaagacat gtacatcagg ccatcaagcc cattcatatt
     5701 ttgctcaatc acctgagtga ccgagtcttc taccgtttgc gcatcggcac ctggataggt
     5761 agcgctgacg gtaatggtcg gtggcgcaat ctgcggatac tgcgcaaccg gtaagttcat
     5821 gatcgccaga ccacctgcaa gcatcataat aatggcaagt acccaggcaa aaaccgggcg
     5881 atcaataaaa tagttagcca tgaaagtccc cttaagcctg caacgttatt gtttcgattc
     5941 ggtgctggcg ttttcctggc tggaggaaat tgctcgtgct ttgatacccg gacgaatgcg
     6001 ttgcaaaccg gaaacgatca cccgatcgac agcctgcaag ccagaggtga caacccactg
     6061 gtcgccgatg gctttgctgg cttcaatttc gcgtagctgc acaacatcgt ctttatccag
     6121 aatgagcgcc gttgctttac cctgggcgtt gtgggtgacg ccttcctgcg gcaccagtaa
     6181 tacattctgg cggctacctt catccactaa tgccgtgacg tacatgccag gcagcaagtc
     6241 accatttggg ttggggaaaa tcgcccgtaa cgtcacggag cccgtggttt catccaccgt
     6301 cgggtcggag aatttcagtg tgccggtctg gctgtagcgt ttaccatttt ccagattgag
     6361 ctgtactggc gtactgccct gaacctgttt gatttgccca ctggcgacct cttctttcat
     6421 gcgcaagaaa tcctgcaccg actgcgtgag atcgacataa atcgggtcca gacgttgtac
     6481 ggtaaccagc gaatctgcct gattagcggt aacgagtgcg ccgacggtca ccgacgattt
     6541 cccgctgacg cccgtaatcg gcgaggtgac attcgcgtat tgcagattga tcgtcgcctg
     6601 ttcaacagcc gctttggcga cggtgacatt ggcttctgct tcattcagct gggtgcgcgc
     6661 ggtgtcgtaa tcctgacggc taacgtagtt ggtcttcagc aacgatgcct ggcggttaaa
     6721 ggtgatgcgg gcattgctgg cggtagagag cgctttcgcc agcgagcctt tggcggagtt
     6781 tagctcggcc tgtaaaggtg caggatcaat ctgatacagc gaatcgccct ggttcacttt
     6841 atcgccttcg ataaagttgc gtttaatgat aataccgccc acctggggac gtatctcggc
     6901 aacttcataa ggaacggttc taccgggcaa ttcgctcaac acattgaccg aaccggggga
     6961 gagtgtgacg acaccgacct caggcgtcat ggcggcggcg ttttccgccg atttgtcatc
     7021 gcaggcggtg agcatcgcgc cgcagaataa caacggtatt aacagctttc ttcttctgtt
     7081 cattttagtc cctgaaaatt cttgagaaat aacggttctt taaattgcgc gcgaggagag
     7141 atatgaggga tttacagacc agcggcatag tggggttgtc agccagtaag gtgggataca
     7201 ggcacagtga tcgacatggt gaggtcaacg acaaaaaaaa tgttgccgtt ctgccaacag
     7261 ttcctgccag cattcgggca acgaagggtt ctactggtgg atacacatac caggggaata
     7321 aagtcgtttt agcctctcct ttagtaatca ccgggggtaa tgaaatcagc atctgcatcc
     7381 ctcgtcatgc cagccatcaa tttcagttgc ttatgtcctg actaaaaata agatgtgata
     7441 cccagggtga cgatgtcgct catacgtctt agtttcaact tgtacataat gttgaatttc
     7501 tgaatcttta atgtttgttg cgaaatattg agcgtcaacg tgatattgct ttcattttta
     7561 tttttcagaa tcagttgcat aattttgaac tgattatgtg aaaaacataa ttgtgaattc
     7621 ttatggggca agtgtttacc ataagtaatc tcaagaagat ttttgatact ttctttgcgg
     7681 ctaacaaaat aaataggcgc tttagctttt agtttactga tgtgataagg tgccaaaaca
     7741 ataattctct cggcatctaa tttctccaga aatttaatcg cttcttcatc aaggatatga
     7801 ttgtgatagg tatcaatgat aaccttgaag ggtttattgc ctactttttt gatctctgac
     7861 agggaattga tttttatcat ttcgtgatta tctttcaact gccaaaagcc ctgtaaaaga
     7921 aaagaatctt tcgtcatgag aaaaatcata acttgctcct tagccgttat cgtttcgaac
     7981 atgtcatcct tttcattatt tacatccttg tccgaatcgt tgttcaatat agtaaacgcc
     8041 tataagaact ttacccttcg tgaactaata cgtctattaa cactaatcaa tacttcagat
     8101 ttatccatca cgcactccat atattgatcc taagtaagat tcctggttgt tatcagcttg
     8161 taaatagtaa acaaaaagtt aacgtttgcg gattactgcc caagaataag ttatcaataa
     8221 ccagtttgtg atctctgaag aatattacta aagttaaaat gtaatccgat ttaaatatcg
     8281 agtctccttg tttcgactta agctggcaat tggattgcca gctttctttt aacgcattga
     8341 aattacctga gtaaataacg cattcatgtc ttcaggtttt tatatagcgt ctggagacac
     8401 ggatatttat gcaatgtaat caacgccagt tgcaaaaaaa tgaacccgga ttacttattt
     8461 aaccgcccat agcatcaacg cttacggaac tctttgttca ctttcccaca gcacttttaa
     8521 aacattaaac ctgactacgg aaaatatcag ccatgataat gtttgaaatg gctaatttgc
     8581 catggagtga aaaaaattag atgaaattca gtaggttgaa ataatcacta gcaggtaatt
     8641 atttcaatga tagtgcgcaa ttgatctaca acactgcgta gcggagagag tattaatcgg
     8701 atcatagtca catcaagtga ctatgatccg ggtgacaacc ggggtaatta ttgctgctta
     8761 acgaacaaac tggcgaagct gaacaggctg gcggcgctaa atatcagttc aattcccacc
     8821 agtgtggaaa ccagcgttac agacaccatc ggcgttgcac caaggaatat ccaggcaatg
     8881 acgatatcca gcacaccaat aacgagctgt agccagctgc ctttcattga acgctgacga
     8941 taccaactca tcaggcgaat aacccctgca acacagaaca aaccggcaat aaatgccgca
     9001 atggcaaaaa tgcccagctc cggtgcgcgg atgaagaaat agccgatcaa taaataggcg
     9061 actgcgacga ggaaaccgga taataccggc cagaaattat gactgcggtt gctgaataac
     9121 ccgacaataa gcgcaatacc cgagcagatt aataatgcac ccactactgt gcttaaaata
     9181 tcgccagaga cgaacgggaa actgatacac agcaacccga cgataaacag cagcacggca
     9241 ataaactgga ttgctctgcg atgtttttta agcatctcca gatcaaactt caaaattgtt
     9301 gccttatcta tatataacat agaaccaccc tataaaatta agaagaaaat cccctgctat
     9361 caatctatgc caaaaacgcg tctaagaatg cagtcgattt aataaaaatt tcctaattgc
     9421 agtatctgat gcatctgtaa ctcattgtat tgaaataaaa atatctgatt ttgatatttt
     9481 ccatcaacat gacatataca gaaaaccagg ttataacctc agtgtcgaaa ttgatttgtg
     9541 acggctcttt cactttatag ttgaggatat tacgatgaaa aaagtattag gcgttattct
     9601 tggtggtctg cttcttctgc cagttgtgag caatgcagcg gatgcgcaaa aagcagctga
     9661 taacaaaaaa ccggtcaact cctggacctg tgaagatttc ctggctgtgg acgaatcctt
     9721 ccagccaact gcagttggtt ttgctgaagc gctgaacaac aaagataaac cagaagatgc
     9781 ggttttagat gttcagggta ttgcaaccgt aaccccagct atcgttcagg cttgtactca
     9841 ggataaacaa gccaacttta aagataaagt taaaggcgaa tgggacaaaa ttaagaaaga
     9901 tatgtaattc cgggaatgcg ttacatcgta cttccttgca tattgaacag gccggaatat
     9961 cttctttaaa agcagctatt cctcctgttc atatataatc tatatattga atgggttaca
    10021 aaatgaatat ttcatctctc cgtaaagcgt ttatttttat gggcgctgta gcggctttgt
    10081 cactggtgaa cgcacaatct gcgctggcag ccaatgaatc cgctaaagat atgacctgcc
    10141 aggaatttat tgatctgaat ccaaaagcaa tgaccccggt tgcatggtgg atgctgcatg
    10201 aagaaacagt atataaaggt ggcgataccg ttactttaaa tgaaaccgat ctcactcaaa
    10261 ttcctaaagt gatcgaatac tgtaagaaaa acccgcagaa aaatttgtat accttcaaaa
    10321 atcaagcatc taatgacttg ccgaattaat gaggtacaag taaaaaggag tagcaagttg
    10381 agccatcttg ctgctccttt ttgcattttt atatgacagc agaatttatt atacgtctta
    10441 tactcgcggc aattgcctgt ggcgctattg gcatggaaag gcaaatgtga ggcaaaggag
    10501 cagggttacg cacacatgta ttaattggca tgggaagcgc cctgtttatg attgtttcga
    10561 aatatggttt tgctgacgtg ctgtctttag atcacgtcgg actcgacccc agccgtattg
    10621 ctgctcaggt ggtgacgggc gtcgggttta tcggtgcagg taacattctc gttcgtaacc
    10681 aaaatattgt aggtttgacg acggcagcgg atatctggat gaccgccgct ataggtatgg
    10741 ttattggcag tggtatgtac gaattgggta tgtatggttc agtgatgacc ttgctggtgc
    10801 tggaagtctt ccatcaatta accttccgcc tgatgaacaa aaattaccat ttacagctga
    10861 cattagtgaa cggtaatacg gtatcaatgc tcgactggtt taagcagcaa aaaataaaaa
    10921 cggatttagt ttcgttgcag gaaaatgaag atcatgaagt ggtcgccatt gatatccagc
    10981 ttcatgccac aacgtcgata gaagatctgt tgcgattatt aaaaggtatg gcaggggtga
    11041 aaggcgtttc aattagctaa tctgtgtggc agcgtagtca gactcaccgt aagcctgaaa
    11101 ttcacaccag ataatcaata tgctgatggc gtaccagctc attgatccgc ttaagattga
    11161 ggatcatcat gatattgtgt ttatggcagt agaacgtttt tagcgttatt ttcagtttct
    11221 ccagaatatc ctccgttgtc atttgattcg caatgcagct cagaacctga tgttgcttgc
    11281 gcgaaagtga cacagccgct tcaggcacag agcagtaact gccattgatg agtgcgacaa
    11341 aatcgatgat agtgatagtc cgcggaacaa aggtcaccgg cactttcccc aggcagcgtt
    11401 taatattaaa gggggagaaa ataatcacat ggacaggttt taatcgttca atttgagtga
    11461 gaaaattaga atgaaataca ttattcatta atgtatcaat aatgacaaag gcattctgat
    11521 gcaacattcc gtcgatctct tcttcgttct gtatatgaac gacattacct ttgctcaaaa
    11581 tgtttttcat cgcggtgaag aacatcgtat ccctggtaat tataagaaac ataaccgact
    11641 cctggtgcgg acattaattt tataatcagt ttgccaaagg taattaacag gacagggctt
    11701 ataataataa tagttagctt gctgtgtatt aattttatgt aatgcacgat gcagatgctg
    11761 agaaagcatc tgcatctttc ggtggtgtta tttgaccagc tcaggtgtta cctgactcac
    11821 cgcattggtg tagtaaggcg caccccagcc cggttccggc cagaatgcac catagccgta
    11881 atcccatagg ttataggtgg tattaaccac ttctctcaaa tgccacacct ggatgccctg
    11941 catattcact tccaggaagt tatacgggac tttattgata aagccaggtt gttcaccctg
    12001 aatggtaccg aggatggtaa caaagtgatt acgatagttc actgggtcaa ggaagccgct
    12061 ttgtctggcg agcagtcggc cctgatagtt ggcttcaata tcaggtttcg catagctatc
    12121 caacggtaat acagcgattt ctaacaacgt atccgttttg ccattgataa cgttgataac
    12181 cttcccacca aagcgcgctt gttgaccaac atataacccc ggctggttat gaacagcaac
    12241 aaaacttttt tgaatatcag gttggttatt gcctttgata ttttgcggaa ttgaactaca
    12301 tgcggcaagc aaaaatgaaa ggctgaggat gagtgcacct tttgtcatgt tcatgttact
    12361 atccttatca acaaatatta aaaccataat agatatttct ttatagtttt catctgattc
    12421 tgaggcgata tgcctgatag taacgtaaac ctgtctgatg tttatatccc ttttgtttag
    12481 ttcaattcca ttgattttgg ggcgtggcat aagtatccat cgccccataa tataatcctt
    12541 tgttttaaaa ttacataaaa tctattttta ttcaataatt ataaagtgct aataatcaat
    12601 attatggtat tatattctga taatgatttg ataagcgaat tcttttgcca gatggtattt
    12661 ctatttccac cccataattt atatcttttt cattaggaag tggcctcttt aaataaggcg
    12721 tgtgtgacat tttttttggg ttaagcgtct cgaattgaaa tacttcgaac tgatattcag
    12781 acatttctgc ccatgtttga attttattgt atcgagagag tgtcgtagag gctttaactt
    12841 gcttataaca ttgtttttgg aattcttgct gatattttaa tatgtcattg tatgaaagat
    12901 tggttatcct ggcctctaaa aatttaatta ttgtcgaagc aatttccgct tttgctcgta
    12961 aaaagttgtc attaatggtt aataatgttg aaaataaacc ttcgatttgt ttgtcaagat
    13021 attgtccatc tttatataat ttgggggggt agggtgttct ttatgtaaaa aatagtgtca
    13081 cctaaatttg cgtcagtgaa atttatatta agtagatctt cgaaataaaa ccttgacaag
    13141 gttagaacga acccggaaag gttctgtcct gtcatattga aatcaataaa gttggttccg
    13201 gcaaagactt tcatcctgtt tttattttca ctgtgctcaa tatataactt cgtcattttt
    13261 tgatacaggc tttgaatatc ttttatatta gttggtaagt cagctcgttg ttcagcaata
    13321 aaattagtat ctgaaaacat ggtttggaca ctgaatgtta tgggtattcc ctcttctacg
    13381 ctaattttag ttatgattgc cttgtcgggt ttaggattag cgacaacaat gattcgacat
    13441 tcagcacttt tgtttttttc atatctaatg ttattaatct gattaagtat tgattgtgtc
    13501 tgttgcgtaa gtggtgtcga acttatcgtt tcaatgttat taataagact tacaagttga
    13561 accacaactt ttgagtagtc tgcatttgta tatgtggtgt tcgtgtggca tgcattaatt
    13621 tgttggagtt gttgttgcgc taaatcaaat tgttcagggt tgtatccttc tccagagaat
    13681 gtggaattaa tgggttgttg ttcttcccaa ttatcacaag gccacttcgg tgtgtctggc
    13741 gttttaacat tatcggtatt tgttgtgcag ttataaatat tgccgtgata tgtatttatt
    13801 atacctgggg taaagtcaat tgacataaca ttccttattc atcatctgtt ttatgctaag
    13861 gtttttaaat tggataatta gaacaggaat ggattttctt ctacacacaa taaatataat
    13921 gcgttatatc ttcctgatat aattaccttt aaattccctt tcatttccac ccggtaatat
    13981 ttgtgtataa aaaaagcagt gatagtatcg taaaggaaaa cgttaacaac tatcaaaaag
    14041 cgctcatttt aaaaagttat tatgttctcc gatagtgtgt gaagtaatat ttttgtgatg
    14101 ttttagatgt gtaataatga accaggttaa agtgtattta aaaatgtgtt gtattagcga
    14161 ctgaaatctg ccttttaaaa aggaggaggg tactgagaca aagagtcatt gcttctccga
    14221 taaaa
//
LOCUS       DAJVUY010000106        13664 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.106, whole genome shotgun sequence.
ACCESSION   DAJVUY010000106 DAJVUY010000000
VERSION     DAJVUY010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13664
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.106"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..1866)
                     /gene="speC"
                     /locus_tag="OQQ72_002836"
                     /pseudo
     CDS             complement(1..1866)
                     /gene="speC"
                     /locus_tag="OQQ72_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2264..2962
                     /locus_tag="OQQ72_002837"
     CDS             2264..2962
                     /locus_tag="OQQ72_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HCS2012498.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWFA"
     gene            3068..3143
                     /locus_tag="OQQ72_002838"
     tRNA            3068..3143
                     /locus_tag="OQQ72_002838"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3101..3103,aa:Phe,seq:gaa)
     gene            complement(3292..3828)
                     /gene="yghD"
                     /locus_tag="OQQ72_002839"
     CDS             complement(3292..3828)
                     /gene="yghD"
                     /locus_tag="OQQ72_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspM family type II secretion system protein
                     YghD"
                     /protein_id="HCS2012499.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(3830..5008)
                     /gene="gspL"
                     /locus_tag="OQQ72_002840"
     CDS             complement(3830..5008)
                     /gene="gspL"
                     /locus_tag="OQQ72_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HCS2012500.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5005..5982)
                     /gene="gspK"
                     /locus_tag="OQQ72_002841"
     CDS             complement(5005..5982)
                     /gene="gspK"
                     /locus_tag="OQQ72_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HCS2012501.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(5985..6584)
                     /gene="gspJ"
                     /locus_tag="OQQ72_002842"
     CDS             complement(5985..6584)
                     /gene="gspJ"
                     /locus_tag="OQQ72_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HCS2012502.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6581..6952)
                     /gene="gspI"
                     /locus_tag="OQQ72_002843"
     CDS             complement(6581..6952)
                     /gene="gspI"
                     /locus_tag="OQQ72_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HCS2012503.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(7012..7512)
                     /gene="gspH"
                     /locus_tag="OQQ72_002844"
     CDS             complement(7012..7512)
                     /gene="gspH"
                     /locus_tag="OQQ72_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001115132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HCS2012504.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFKDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNAC"
     gene            complement(7516..7971)
                     /gene="gspG"
                     /locus_tag="OQQ72_002845"
     CDS             complement(7516..7971)
                     /gene="gspG"
                     /locus_tag="OQQ72_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HCS2012505.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     NRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(7988..9211)
                     /gene="gspF"
                     /locus_tag="OQQ72_002846"
     CDS             complement(7988..9211)
                     /gene="gspF"
                     /locus_tag="OQQ72_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HCS2012506.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALAELRLFPP
                     MMLYIIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9211..10703)
                     /gene="gspE"
                     /locus_tag="OQQ72_002847"
                     /pseudo
     CDS             complement(9211..10703)
                     /gene="gspE"
                     /locus_tag="OQQ72_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10703..12763)
                     /gene="gspD"
                     /locus_tag="OQQ72_002848"
                     /pseudo
     CDS             complement(10703..12763)
                     /gene="gspD"
                     /locus_tag="OQQ72_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12793..13622)
                     /gene="gspC"
                     /locus_tag="OQQ72_002849"
                     /pseudo
     CDS             complement(12793..13622)
                     /gene="gspC"
                     /locus_tag="OQQ72_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016238556.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
BASE COUNT         3063 a         3938 c         3523 g         3140 t
ORIGIN      
        1 gcgctatgcg catcctgggg gttcatcacc actgacggga aactctgctg gcggaacatc
       61 gctttttgta ggtctttgac gtcgaaactg acatacagat cgtgcatctc ctgacacaac
      121 tggcgcaaag tgtagtcgcg atagcgcacc ggatatttgt tataaacgct cggcaacacc
      181 tcagccagcg gcgagtcatc ctcaatatgc tgttcaaact gcgccaacat ctctaccagt
      241 tgtgccagct tctcgtggct ttccgccgga gttaataaga acagaatgga gttgagatcg
      301 cacttctccg gcacaatgcc gttctcacgc agatagtgcg ccagaatcgt cgccggaacg
      361 ccaaagtcgc tatattcgcc ggtttcggca ttgatacctg gtgtagtgag taacagcttg
      421 cacggatcaa caaaatactg atccgcggca tatccttcaa agccgtgcca cttcgccccc
      481 ggctcaaaac tgaaaaaacg gcggtcgctg gctaacactg atgtcggata atcctgccac
      541 aatttgccat caacaacggg cgggataaac gggcggaaca gcttacagcg cgcaagaata
      601 gccttgcgcg actcaatacc caactcaacg cactcagccc acagccgacg cccactctcc
      661 ccttcatgaa ttttggcgtt aacatccagt gcagcaaaca gcggatagaa agggctggta
      721 gaagcatgga gcataaaggc gttattcaac cgcttatgcg ggcaaaaacg cgcctgtccg
      781 cggatatggt tatctttttt atggatctgc gacgtctgtg agaatcccgc ctgctgtttg
      841 tgcaccgact gagtcacaaa gatccccgga tcgttttcgt taagttctaa tagcagcggc
      901 gagctatccg ccatcatcgg gataaactgt tcgtaaccga cccacgcgga atcaaacaga
      961 atgtaatcac acagatgccc aacggtatcg atcacctgac gggcgttata gacagttccg
     1021 tcataggttc ccagctgaat aatcgccagg cgaaacgggc gcggcagctc ggctttttct
     1081 ggcgcaacgt cgcgaatttg ctggcgcaga tactcttcat taaaacagtg cgcatcaata
     1141 ccgccaatga aaccaaacgg gttgcgtgaa gcttccagat agaccggcgt cgcccccgcc
     1201 tgaatcagcg cgccgtgatg attcgactta tggttgttac ggtcgaagag caccagatcg
     1261 ccacgcgtta acagcgcatt cgtcaccact ttattcgctg ccgatgtgcc gttcagcaca
     1321 aaataggttt tatcggcatg aaagactttg gctgcgaatt tctgcgcatc tttcgccaat
     1381 aagcagatcg cccaatttta cgtcagcgtt acacatatcg gcgcgaaaga cgttctcacc
     1441 aaagaaatcg taaaaatggc gtccggcagg atgcttttta aaaaacgcac catgttgatg
     1501 tccagggcaa gcaaaggtgc tgttgcccat ctcaacgtac tgcgtcagcg tgtcataaaa
     1561 cggtggcagc aaattctctt catactgaca ggctgcggat tccagctcca gccactgctg
     1621 ctcgttgccg ttgattaccg ccgtaacgcc cgcaggtaat tcaacagcat gttcggaata
     1681 caaaaacacc ggtagatgaa aaccggtgcg cttaagcaac gcaagaatgc cactgcgact
     1741 atccgcagcg gtaatgacga ctgccacgac gtccgtaaaa tcagtatctc ccaacgccac
     1801 cacgcgacga tgagaagaaa gtcgggatac cagttcacta ctggcggcaa tattcattga
     1861 tttcataagc gcaaacccgt ttcggggaag taagaatacc ggacaaggtg gaaaaccctg
     1921 ccccatgaga tatgggtcaa actggtcacc agctccgacc gccagacatc agtaaaagca
     1981 gaaacgctct gattttactg ttgtcctgca gtgagcgtgc gttaacttca ccgcatgagc
     2041 agtaacatag aaagggaaac gtttcgcgcg aaacggcgat aagcgagaga atgtaaggag
     2101 gtggcgtgca tcgggcaaac tccgtacaga gaggagaaaa ttcgcgcaat catggcacct
     2161 ttcgctaaag cgtgcaagcc aggactttgc gaccagacaa gccatcaaca aggcaaaaag
     2221 ttcataataa gaaaatcaaa caatacagtt aacaggaact cttgtggtca tcggcccttt
     2281 tatcaacgct agtgcagtct tactgggtgg cgttctcggc gcactgctca gccaacgctt
     2341 accggaacgt atccgcatct ccatgacatc tatttttggt ctggcatcgc tggggattgg
     2401 tattttactg gttgtgaaat gcgccaacct tccagcgatg gttttagcta cgctacttgg
     2461 cgctctaatt ggcgaaattt gtttgctgga gaaaggtgtc aatacagcag tcgccaaagc
     2521 acaaaatctg tttcgtcact cacgtaagaa gccaacgcat gaatctttta ttcagaatta
     2581 tgtcgcgatt attgtcctgt tttgcgccag cggcaccggg atcttcgggg cgatgaacga
     2641 agggatgacc ggcgatccga gtattttaat cgccaagtca tttcttgatt tctttacggc
     2701 gatgatcttc gcctgctcgc tgggtattgc ggtgtcggta attagtatcc cattactgat
     2761 catccagtta acgctggcgt gggctgccgc gctgatatta ccgctgacca caccgtcgat
     2821 gatggcagac ttcagcgccg taggcggttt attgctgctg gcaaccggat tacgcatctg
     2881 tggcattaaa atgttcccgg tggtcaacat gcttccagca ctccttctgg caatgccgct
     2941 ttccgccgcc tggtttgcct gacaatgcgt gcaatagcgg caaagtgatg atagattgtg
     3001 cagtctgcag taaattgaag aaatttgatt gacgagacga ggcgaatcag gtttaatgcg
     3061 ccccgttgcc cggatagctc agtcggtaga gcaggggatt gaaaatcccc gtgtccttgg
     3121 ttcgattccg agtccgggca ccactaattc ttaagaaccc gcccacaagg cgggtttttg
     3181 cttttggatc tgacaataac cttcacgaaa aaagtttgct tataaagtct gggggaatta
     3241 ctctcgccac gttaacgaga gtaattttat tgatactaat ctcctgatac tttacccccg
     3301 tccaaactcc agccgctgga cattcaccat cccagtcttc tcagcagcac tggcatcaat
     3361 ttgtgtcacc cgcagcgcat acttttcatc cagcgcgttt aaccagttca gcaggtcatt
     3421 aaacaccacc ggatctatcc agacctgaat attctcccca cgctcggcta tccgcttgat
     3481 gactaccgag tgcgcggaag cactgtcact gataacccgc gatacctgcg caggcgttgt
     3541 tgtggcggat tttcgcgccg caataatatc cggcgcggcg ctcctcagtc tggtgttcat
     3601 cgccaccagt tgctgcaaca ttgtctcctg ttgtactatc cgttcgctca acggctgcca
     3661 gatgaggacg taatatccga cgctaaacag gaacaccacc gctgccagta acatgccctt
     3721 ttcacgcgga gaacgccccg ccaggtgttg tgccagccag tgttcgccac ggcttaactg
     3781 gcgttcacgc cattgctgaa aatagtgaat aaatttatcg cgtaacatgt tatttcctcc
     3841 gcaacgttac gccgccggaa accgcatcac cctctttctg taacgcgtcc tgttgcacaa
     3901 cataatcggt tgccagtgca ctacgcagtt tgtcgaaact ggcaaagttc gcggcccgta
     3961 gctggaggtg aagtatctgg cgtttttgat caaaggtaaa accacgcatt tcgatgtcgg
     4021 aaagtgacgc tgatttcagg gtgctggcta tcgctgacaa ctcggcgagc agccgggtat
     4081 cgtcggcctg tgggcgatat tttttcagcg ccatcgtcac ctgagagcgt aaattcacaa
     4141 tccgcttctg ctccgggaac aacgttaaga actgttcctc cgcctgggtg cggctttgcg
     4201 ccacctgttc gctgacgctc cataacgtca cgccccgctc cactgccagc gcaactagaa
     4261 tcagcaatat cggcagaatc atcacccgcc agcgcgccca ctgttttcgg tagctgacgc
     4321 gaggctgcca cggccctgtc agcaggttcc cttccggttc gccataagtg gtaacggcgg
     4381 gcagagctgt aacggtcagg cgttcagcgt ctgcgccagc ccatgctgat agcttttccg
     4441 gtgcaatgcc gactacggtt agcgaaagcg gtaaatcctg ctcattgagc tgggcgcgga
     4501 acatgaccgg agccagcgcc cgcccggcgc tccatccccg gcattcatca atgcggcaga
     4561 taacccgttg cgcatcgcca gccataaccc cacaaggaat ggacatccag tctggcgcga
     4621 cggtagcgcg ggtgatgccg ttttcctgca accactgcgc aatgttgcgc atatgctgtt
     4681 ggtgaatcac tgctacggtt gccagttgct ggtcgatatt caacggggcg aaatgcagtt
     4741 catcgatatc ctggttcagc tcttcttcca gtaaggcggg cagaatggtc ggtatctgct
     4801 tacgggcgac atcaggcagt tcaacctgcc agacgctgat ccattcgccg ggaatgtaga
     4861 gtcgaatcgc atcggtttgc agccattgct ggagctgttc gttagcaacg tcagaccaga
     4921 taccgtgctc cacatcgggt gtacggcgct gccaatggat gggatcagcg gcgcaaagcg
     4981 ggaaaaaaat ctcaaggatg gaactcactc actttctcct gtctgatgcc agagaaccga
     5041 aaagtgttgt gggcccatgc ggacaattaa cgagttcatc gtcagttcaa tctcattcac
     5101 ggtgatatct gaacgcagcc agaagtaatt gctgtccacg ctcaggacgg tttttagctg
     5161 ttttttagta cgctcatcga cgtcagcaag tagcggctgt gcaagaaact gatcgacatc
     5221 ttcccagccc ttcgccggac gttgttgtaa taacgcccgc gcctgaacgg ggcttaacca
     5281 cgggtcaaac agcgcctcaa gaatcacact ttgcgtgacg tctaaagtat tgatgttgat
     5341 ttgctggcgg atcatcggca gcgcacagac cagcggtttc agtttttgat aaagcccggc
     5401 gtccattccc tgtaccacgc gcatctcact gatatcagcc agcggttgat tggcggcgta
     5461 gaacggcacc gaacgggcga gatactcgct gtcttcacgg cccagacgtg tctgcacgct
     5521 gcggtcctcg tcaataaact cccacaggct ttcggctatc agttcggccc gataagcagg
     5581 cacatccagg cgcgagatca gggcaatcaa ctgttgtacc gcaagcggac gcgacgccgt
     5641 tgtcggctga gcaagggcat tcaggttaaa gcaagcctgt gcgtcacgca gggtgaccgc
     5701 aatttgcccc tgcggcagag ggaagaaacg agggccggat gcccacggct gtgccagatg
     5761 cacgcgcttt tcatttttca ggctcagact gagcgcgctc agcgccaggc tttccgcact
     5821 ggcgctgtac cacagcgcct gctggtactc ctgctggctg cgcgttcgcc caagttgttg
     5881 ctgcattcgc ccggaaagcg tgatggttac cagcatcata accgccagca ataccagcac
     5941 cacgaccagt gccattccgc gttttggtgg tgaggtgatc atgattattg cggcccgcgt
     6001 aacaaccaga tgcgttcaat ctcgccccat tgcggcgaat gcagggtcat gcgtaccgcc
     6061 acagggatcg cctgtactga cgaccagctc tcctgccagc gcgtgccgtc gtagaactgc
     6121 aaacggagcg aatcggccgg aatcaacttt tgcattgtcg gcttcacgct gcctgcggca
     6181 tcggtcagcg gccaggctaa ccgttcgaga taaccgtcat gaatgcggta accgacggtg
     6241 agcagattgc tgcgcggcag acgcatcaac gggttaacca caccgccgcg cacaaaacgc
     6301 attccttcac tctcagacgc cagcacgcca gcgccagcca gtaaagctgg ttcacgctgg
     6361 ccctgatcgc ctcttaccgg acgcggcatc atttgggtca gatcgtgggt cagaaaactc
     6421 atcgtttgct gcatgaggtt tagtttttga tcgtgatcgg cgacggcgct attcacgcgc
     6481 gtgacgccgt tagtcacctg ctgcgccatc agtgccagcg aggcaaaaat ggcaattgcc
     6541 accaacattt ccagtaacgt gaaaccagcg cgagtccttc tcactgttgg cctcccacgg
     6601 cgctaaacca ggcgcgtcgt gactgaatca ccgacgaaaa gtcttcgtga cggctgactt
     6661 caatatccac cgcctggagc agcgcgttgc ctgtattcaa tgggattgtt cgccagtacc
     6721 agcggcttcc tgccatatcg ctctcgccct gatgcctgac cgcccgctgc tcacgggtca
     6781 tcaggtagag cagcgcagtc tggttttcag ctacccagcc cgctaccgtt ttttcctcaa
     6841 gaacgtgctg attactcagc gcaccgctgg caatctgtaa caccgccgtg gcagccagcg
     6901 caaaaatcgc cagcacgagc atcacttcca gcaaggtaaa tccgcgcttc atggcatcct
     6961 ctcatcacat tgattgaggg ataacgcgcc atcgtgtgcc agctttaccg ctcaacatgc
     7021 gttttgcgcc gccgagtaga agcgcagcgt aaacggcgtg gcgggttcaa aaggcgaaaa
     7081 acggatctgc ggcgtcttct ttttcgcctc tttttgcaac tccagttcaa tatcgtgcag
     7141 cgtcaggcga cgacgttgca gctccagcgc atattccttc tgccagatat cacttccggg
     7201 ttgtaacagc atctgcacct gtttcggcac cgtaacctgt gccgataacc gggtcgcaga
     7261 aacgggcaac cactgcccct gacgacgctg cataaactga tagccaggcg ggtcgattag
     7321 cacaccgagt gtctgtcctt caatcactgc cctgtcctta aactgcgcaa agcgagtcag
     7381 aaaatcctgt gccgcttttt tcgcgggcgg ttcagaatcg gtcgcaaacg tctgtaccac
     7441 gcccgcactg gcaaggccga taaggaaaat caccagcatg atttccagaa gtgtgaatcc
     7501 gcgttcaggc actgcttact gaaactcctg caaattccag ttaccgatat ctgcgccagc
     7561 gccttccccg ttttcctgac catccgcccc cagggtataa acatcaaaca gtcctttttc
     7621 acccgggctg agatactgat aatcattgcc ccacggatcc tttggcagtc gtttgatgta
     7681 tccaccagta cggtagttgc gggagtccgc catattggct ggctgctgga tcagcgcttc
     7741 cagcccctgt tctgtggtcg gataacgccc gttatccagt cggtacatat ctagtgcgtt
     7801 ttccagcgcc acgatatcgc tgatggcttt ttgccgattg gctttctctt tgttgcccaa
     7861 caggttaggc accaccagac ttgccaggac gccaagaata acaatcacca ccatcacttc
     7921 cagcagggta aaacctgccc gtggtttgtg tgtgcgggat aacgaattca tgtgataact
     7981 ccgtaaatta cattccaacc atattattca gttgcagcat cggctcgagg atggcgatga
     8041 caataaacag caccacgccc gccatcatca ccaccagcgc aggctcaaac agccccaacg
     8101 ccagccccac ctgggtatca aattcccgtt cctggttaac agcggcctgc tcaagcatgg
     8161 tttccagttc gccgctctgt tcgccggaag cgataatgta cagcatcatc ggcgggaaca
     8221 ggcgcaactc cgccagcgcg gcgcgcagac tgcttccttc gcggacgcga tctgccgcca
     8281 gcagcagttg ttgttcgaca tagcgatttg ccgacacggc ggcagcggtc tgaatgcctt
     8341 ccagtagcgg aacactgctg gcggtgagga tgcttaatgt gcgggaaaaa cgcgccgtat
     8401 tcagcccgcg cgcaacacgg cccgtcacgg gcagacgcag caaggtttta tcccagcgca
     8461 ggcgcatagt aggattttta agtagccatt gccccagcac cagaagcgcc agcaatcccg
     8521 ccagccagta aacgccgctg gcctgtaacg catcactcat agcgataagc gcacgggtgg
     8581 aggagggtag cgcgtgtccg agatgatcaa actgttcgat gattttcggc accactgccg
     8641 tcagcaaaat agtgaccacg cccgttgcca ccaccagcat aaccagcgga tagagcatgg
     8701 cctgcaatag acgtgatttc aggcgctgtc gctgttcggt gtaatctgcc aggcgattga
     8761 gcaccacgtc gagatgcccg gatttttctc cggcagcgac catcgaacaa aacagggaat
     8821 caaagacgcg gggatgttcg cgcaggctgt ccgacagggt ataaccttcc tgaatccggc
     8881 tgcgcagcgc cattccgagg ctcttcacat gcagtttttc actttgctca ctgaccgcct
     8941 gcaagcaggt ttccaacggc attgctgcct gcaccagcgt tgccagttgg cgcgtgaaca
     9001 gcgccagatc tgccgccgcc acgcgacgat gtgcgtgccg ccgacgctgc aacattcccc
     9061 ctgccgatgc attcatcctg gcttcaatgt gcacggggat aagctcttta ccgcgcaaca
     9121 actggcgggc atgacgcgcg gaatccgcct caatcatgcc tttggttttg cgaccattac
     9181 gctccagcgc ctgatagtaa aacagtgcca ttacgcctcc atggttaccc gcagaacttc
     9241 atcgagagag gtttctccgg cgagcacttt ctcaatgccg ttgctgcgga tacccgcaga
     9301 gtgttgccgg acataacgtt ccagctccag ctccccggcc tgacggtgga tcaaatcacg
     9361 caatgtggca tccaccacgt cagctcatgg atggcagtcc gtccgcggaa acctttgtga
     9421 ttacaggcgg ggcagccctg cggatggtac agagtgacgg ttcgcgcatc ggtaatgccc
     9481 agcaggcgtt tttcttcgtc agtggcaggc gcggcctgac ggcagtcggg acacagcgtg
     9541 cggaccagtc gctgcgccat cacgcccgtc agactggaag agagcaggaa aggctccacg
     9601 cccatatcct gcaaacgcgt gatcgccccc accgccgtgt tggtatgcag cgtggaaagg
     9661 accaggtgtc cggtaagcga tgcctgaaca gcgatttctg cggtttcggt atcgcggatt
     9721 tcaccgacca tcaccacatc cgggtcctga cgcaaaatcg cgcgcaggcc acgggcgaag
     9781 gtcatgccga cgcgggtgtt aacctgtgtc tgaccgatcc cttcaatcat gtattcgatg
     9841 gggtcttcaa ccgtgagaat gttacgcgaa tggttgttca gctcctgcaa tccggcgtac
     9901 agcgtggtgc ttttgccgga acccgtcggc cccgtcacca gaaagatgcc gtgcggtttg
     9961 tgtaacagct ggcgcaactg cacggtcagt tgctggctaa gccccagacg ctccagcgtc
    10021 aggcgggcct ggtttttgtc cagcagtcgc agcaccacgc gctcgcccca ggcagaaggc
    10081 atggtggaga cacgcacgtc aatcgcccgg ccgcccagca gcagcgcaat acgtccatcc
    10141 tgcggtacgc gcttttcggc gatatccagc cgtgccatca ccttgatacg cgataccagc
    10201 agcgaggcca gtttgcgccc cgggcgcagc atttcatgta atgtgccgtc aacgcgaaaa
    10261 cggatcacca gactcttttc aaacgtctcg atgtggatat ccgaagcgcc ttctttaatc
    10321 gcctctgcca gcatggcgtt gatcagtttg atgatcggcg catcgtcgtc actttccagc
    10381 agatcttccg tttctggcag ttcttccgcg agagtaaaaa agtcctcagc agaaccgaga
    10441 tcttccatca gctggcgagc ctcggaagag tcccgctgcc agaccgcatt cagccgctgt
    10501 tcaaattcgg cctcgtcgat ttgccgcagc gtaaagggcg cgttcagccc ccgctgcagc
    10561 tcctgcaaaa cagagagcga tagcggatga acgtggagga tctccagcga cgcttcgcac
    10621 catgccacca ggctaaaccg acggctgaaa ctgtagggca gacgcacggt cttggcggtg
    10681 gtttcctgtg ctacaggcac cattaacgcg ttctcccggc attgaggaac gcgcgaactt
    10741 ccggcggtaa ggcctggttt tgcgctggca gtaccggctg tgcggtgtgc ggcatcaggc
    10801 ttaaaccttg ctcatcacga tagatctgtt cggcgcgcat atagttatat ttgcgctgcg
    10861 acacgccgtc tgccgccata ccgtcatgca gaatggtcgg gcggataaac accatcaggt
    10921 tacgtttttc ttttttatcc gccgtcgatt taaacaggtt accaatcaat gggatatcgc
    10981 ccagcagagg cactttcgcc acgctttctc ccgcctgatc gtccatcaga ccaccaagca
    11041 caatcagctc accatcgtta gccagcacgg tggttttcag tttgcgctca ccaaacacca
    11101 cgtcgaggct ggtctgtcct tccaccttcg agacttcctg ctcaatcacc atctgtaccg
    11161 cgttaccttc gttaatctgc ggcgtgactt tcagcatgat gccgactttt ttcctttcta
    11221 ctgtattgaa aggattgctg ttattggagc caacggtaga gccggttaat accggaacgt
    11281 cctagcccac catgaagaag gcttcctggt tgtccagcgt agtgatgctc ggcgtggaga
    11341 gaacgttcga gctggagtcg tttttaaccg cctgcaccag tgccatccag tcgcctttca
    11401 ccacgccaac cgccgtaccg ctaaatccag aaagaagctg ggcgagtgtg gagagatcgc
    11461 cgttggtatc cggattaatg gtggtagcgc cgttttcact gatcaccgtc gagcctttct
    11521 gcggtttcgc ctgagaaatg gctgccccca gcgtaccgat agggatctgc gtaccattag
    11581 caaactgcat taatccggca tctttcgacg cccactgcac gccgaagttg atattgctac
    11641 cttcggcaac ttccacgatc aacgcctcga cgtgcacctg agcacggcga atatccagtt
    11701 gttcaattac gctttgcagc gactgcatga tgtcctgcgg cgcggttaca atcagggcat
    11761 tactgtgttt gctggcggcg atggatacaa cctcacgccc gctaccgacc gtgccttccg
    11821 cctcttcttt agccgccgtg agcgtgccgc tgacctgttt cagcacatcg accagatctt
    11881 cggctttgct gtatttgaga tagaaaacct ggctgttgcc gctgcgttcc atttctgagt
    11941 ccagccgacg gatcaggcgg cgcattttgt cccgcgtggc cgggtcacca ctgacaatca
    12001 cactgttggt gcgttcgtcg gcgacaattt gagatttcag cgtcgcaggc tggttctcgc
    12061 cgctgttttt cgtcaggctt tccagcacgc gggcgatttc cgaagccgag gcgttatcca
    12121 gcgggatcac ctcttcggtg cgattacccg cgtgatccac gcgctggatc acttccgtca
    12181 ggcgctccac aacggaggcg cgtccggtga gcataatcac gttggaggga tcgtaattaa
    12241 caacgttgcc tgagcctgcg ctgtcgatca tctggcgcag aatcggtgcc agctcgcgta
    12301 ccgacacatt acgtaccggc actactttgg tgaccatttc atcgcccgcg tagttgtcgc
    12361 tgccttcacc gaccagcggc agcggctcga ctttcgcagc gctggatttc accaccttca
    12421 gcacgtcgtt ttccatcggt acgacggcat acccctgtgc ttccagcagg ttaaggaata
    12481 gctggtaata ctggcgttca ttgagcgggg tcatggtgcg aatactcact ttcccctgta
    12541 cgcccggccc cataatgatg gttttattaa ggttagcgcc gacggtttcg atgaacgatt
    12601 tcaggtcggt atctttaaaa ttagcggtga aagtggcttc ttccgcccag accggtgaac
    12661 tgcataatgc cgctgccagc accagcggca gtaaacgctt ttttgttttg aggccagttg
    12721 tcttcttacg ccagaccgac aacgtaatat cacgccaaaa cacgatgaat gattctcctg
    12781 gattaaatgc ggttagcgca gcgcgatgga aatgtcgtgg cgcgcaccct tgcgtaaaac
    12841 cgtaagttga atggaatcca ttgaaggtaa ctgccgcatc agagcaatca ttgctcgtgg
    12901 atcagtgaaa tcctgctgat ttagcgcaat ggcgatatcg ccttccttga aaccgctggc
    12961 atcgaacaga gaacgatctg cccccggctt cactgcataa ccgacaattc cctccttacg
    13021 cacaggcgta agctggatat agttaaaaat tttctgcgga tctttcgcca gtgcctgacg
    13081 cacggcagtc ggtatctcaa ctggcgcact gacagcaggt tcagcaacag cttgctttgc
    13141 ttcgtcactg acagcttttt tgttggtcgc ggcaacggtg gaacgctcct cttcagccag
    13201 gctcaggcgc tctatttttc cctgatagcg cagcatcaca tggtcgcgat tgatttcctc
    13261 aatcaccgcg ttgtgcgagc caagcgtttc accctgcaaa tagacctgct gtttaccgcc
    13321 ttcttcaata accgcgccgg gtctggcacc aaaggcgatc ccgcgcgcac cacattaaga
    13381 cgcgtttctg ccacaggcac aggttcgggt tgttttaccg gcgtggcgac gggctgatat
    13441 ttgccaaacc agttttgctg gctgattaat tgcacgtcat ttttatcgaa cgtttttgca
    13501 tccgcacggg gcggtttatt cgccgatggg gaaacagccg tatattccgc agaaaaggag
    13561 aaatagcgcc agagtgaatg cgccactttt gcagaaataa taagcagcat cagccagaac
    13621 atcccgcgta caatttttgg taatgactcc aacttactga tagt
//
LOCUS       DAJVUY010000107        13586 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.107, whole genome shotgun sequence.
ACCESSION   DAJVUY010000107 DAJVUY010000000
VERSION     DAJVUY010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13586
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.107"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(241..1614)
                     /gene="cobA"
                     /locus_tag="OQQ72_002850"
     CDS             complement(241..1614)
                     /gene="cobA"
                     /locus_tag="OQQ72_002850"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS2012507.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="OQQ72_002851"
     CDS             complement(1633..2439)
                     /gene="nirC"
                     /locus_tag="OQQ72_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HCS2012508.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="OQQ72_002852"
     CDS             complement(2566..2892)
                     /gene="nirD"
                     /locus_tag="OQQ72_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HCS2012509.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG
                     VVQLRG"
     gene            complement(2889..5432)
                     /gene="nirB"
                     /locus_tag="OQQ72_002853"
     CDS             complement(2889..5432)
                     /gene="nirB"
                     /locus_tag="OQQ72_002853"
                     /EC_number="1.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-nitrite reductase large subunit"
                     /protein_id="HCS2012510.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRIFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="OQQ72_002854"
     CDS             complement(5694..6875)
                     /gene="tsgA"
                     /locus_tag="OQQ72_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HCS2012511.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7146..7718
                     /gene="ppiA"
                     /locus_tag="OQQ72_002855"
                     /gene_synonym="rotA"
     CDS             7146..7718
                     /gene="ppiA"
                     /locus_tag="OQQ72_002855"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HCS2012512.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGAPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7823..7990
                     /locus_tag="OQQ72_002856"
     CDS             7823..7990
                     /locus_tag="OQQ72_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HCS2012513.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALA
                     RLVELRRHYER"
     gene            7980..8582
                     /locus_tag="OQQ72_002857"
     CDS             7980..8582
                     /locus_tag="OQQ72_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HCS2012514.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8614..9177
                     /gene="pabA"
                     /locus_tag="OQQ72_002858"
     CDS             8614..9177
                     /gene="pabA"
                     /locus_tag="OQQ72_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HCS2012515.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9263..10483
                     /gene="argD/dapC"
                     /locus_tag="OQQ72_002859"
     CDS             9263..10483
                     /gene="argD/dapC"
                     /locus_tag="OQQ72_002859"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HCS2012516.1"
                     /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNELALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10550..12640)
                     /locus_tag="OQQ72_002860"
     CDS             complement(10550..12640)
                     /locus_tag="OQQ72_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS2012517.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12691..13323)
                     /gene="crp"
                     /locus_tag="OQQ72_002861"
     CDS             complement(12691..13323)
                     /gene="crp"
                     /locus_tag="OQQ72_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HCS2012518.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3289 a         3493 c         3558 g         3246 t
ORIGIN      
        1 tccctatgta ttatatatta attaatattc attgattata tgaatataag cagactgctc
       61 gttaagaacg atacaggaat atttaattgg cgtcagtgag cgaatgactt aattttgtaa
      121 gtcgctgtaa cggtgaatat aacccattag cagataatat ttattaaggg gttatgtttt
      181 atttgctgaa tatataaaaa gagtcattaa gaaggccaga attctctggc ccgggttaaa
      241 ttaatggttg gagaaccagt tcagtttatc gcgcaggcca acaacccgac caataataat
      301 tagcgatgga ctgttcattt gctgagcaag ttcaccgagt tgcgtgagcg taccgtcaat
      361 cacgcgctgc gtgactgccg ttccgttttc gacaattgcc accggcattt cgccaggcat
      421 accgtgttca atcagctttt gctgaatagt cgcggcctga ttcaacccca tatagaacac
      481 cagcgtctgt ttttctgccg ccaggttttc ccagtccagc tcgccaccgg tttttaagtg
      541 tccggtaatt aagcgtacgc tctgggcata atcgcgatgc gtgagtggaa tacccgaata
      601 ggcagagcaa ccagaagctg cggtaatacc cggaaccacc gagaacggaa tacccgcgtt
      661 gcacagtgtt tccagctctt cgccaccacg gccaaaaata aacggatcgc cacctttcag
      721 ccgcaccacg cgtttgcctt tttgcgcttc ccgcagcagg atctggttaa tctcttcctg
      781 cggtacacag tggtatcccg cgcgtttgcc gacgaaaacg cgatcagcat cgcggcgtac
      841 cagattcata atatcgtcag aaaccagacg gtcgtagacc accacatctg cctgctgaat
      901 ttgttgcagt cctttcagcg tcagcagccc ggcatcgccc ggacctgcac caaccagcac
      961 cacttcaccg cgatggtcga gcggttcgtt gattaactgt tcggtcgttt cagtaatggc
     1021 tttctgatcg ttgtttgcca gcgactgcgc caggcggtcg ttaacgaaca atttctccca
     1081 gaaacggcga cgctcactca tcgtggtgaa ctgttgtttc actcgcccgc gtaattgccc
     1141 ggcatatttc gccacctggc ccagatgcaa cggcagcagt gattcgagtt tttcgcgcaa
     1201 caggcgcgcc agaaccggag aggtgccgcc agaggagacc gctaccatta gcggtgagcg
     1261 gtcaataatc gacggcataa taaagctggc ggctttcggc gcatcgacta cgttacagaa
     1321 gatgcgacga gcttcagcgg cttcgctgac gcgctggtta agcgtgtcat catccgtcgc
     1381 tgcaatcgcc agccagcagg tgtcgagaag gctttcatca aatggccctt cgacgagggt
     1441 taacatgcct gcatctgccc atgcggtgaa ctgtggaata aacgctaatg cattcaccgt
     1501 taagcgagcg cctgcgtcta acagcaacct tgctttgcgt tccgcgacat caccaccgcc
     1561 gacaatcaga cagtcgcgat cgcgtaattg gcaaaatata ggcaaatgat ccacgtaaaa
     1621 accccttagt aattaaccgg cagccgtttc agtttgatta aatttgtccg caaccggacg
     1681 attcgatttc ggcgtagcat accaataacc caatcccatg aatacggcac ctgataaagt
     1741 attacccagc gtcacccaca gcaggttatg accaataccc gccagcgtgt aggcttcgct
     1801 gtggttgccg aaccaggaga gcgcgaacag cgtcatgtta gcgatagagt gctcgtagcc
     1861 ggacgcgata aatgccagca gacaccacca gatagcgata aatttcgccg ccccttcagt
     1921 gcgcagcgcc atccagattg ccaggcaaac cagccagtta cacaatgcac ctttgaagaa
     1981 gagtaccatt gccggtgcag tggttttagc cagcgcgacg gagtgaacga tgctggtatc
     2041 taccggcagc aggctaccgc cgccccagct atagagcatg gcaacgaaga cggaaccgac
     2101 caggttaccc agccaggttt gcggcaggat tgcccacatt tgcccgtggc tgatgctgcc
     2161 cgcttttacc ccaaaggtga ggaacatggt gtgtccggtg aacagttcag aaccggcgat
     2221 aatcaccagc gttaaggcga taccaaaggt cgcgcccatc accagcggac gtacggacgg
     2281 gtcgagcaaa ttaccgagcg tgaaaatcaa gatgatccca agacccacat acgcgcccgc
     2341 catggcggag ctgacccaaa agccgagcgg gttatttgcc gacaggcgtg caatgcgcgc
     2401 agcgttagcc gcacacttat taatagtgtc tgtaaacatt tgattatcct ttaaaaaata
     2461 aaaacaaaaa aataaaacaa aaagtttaaa aaatgtcctg caatataccg aaggtaatta
     2521 caggaccatg caaaaagggg aggcattgcg cctcccgtta aaacattaac cgcgcagctg
     2581 caccacgccg tctttcactc gtgcttcgta atgtttgacg gaaaactgtt cgtcttccat
     2641 gcacaagcca tcacttaagc gaaaacgctg ttttttcagc gggctggcga cccacagctc
     2701 gccctggtgt tccgcaatca gcccgcgtga cagcacgctg gactcgaaga acggatcgat
     2761 gttgctgatc gcaaacacct ggtcgctgtg atacgggcgg aaaatcgcga cctgctcgtc
     2821 gcctaacagc gcgcagacgc cggtttcagg caggatgtca tcgattttgc agatgtcttt
     2881 ccactggctc atgcgttgtc ctccaccaga gttaccggga tacgttcata cggcgttgcc
     2941 ggacggtgct gttcgcgctc tggcaccatc tgcacgttcg ggtcacgctt gtcgctgttg
     3001 atgaagtgtt tgaagcgagt ctgcgcggac ggtgtattga ccgtttcagt ccactcacac
     3061 actaccgctt cacgcaggcg cgccatctct tcttccagat gagcgttcag ccccagtttg
     3121 tcgtcaatga tcaccgcttt caggtaatcg atgccgcctt cgaggttttc taaccacggc
     3181 gcggtacgcg tcagtttgtc ggcggtacgg atgtagaaca tcatgaagcg gtcgagatat
     3241 ttgatcagcg tttcgcgatc gatatcagct gccagcagat ccgcatgacg cggtttcatg
     3301 ccgccgttgc cgcaaacata caggttccag cctttttcag tggcgataat acccacgtct
     3361 ttaccctgag cttctgaaca ttcacgggta cagccggaga caccgaactt cattttgtgc
     3421 ggcgtacgga tgcctttgta gcggttttcc agttccacgc cgaggccgac gctgtcgcca
     3481 acgccgtagc ggcaccaggt gctacccacg caggttttcg ccatacgcag tgctttcgca
     3541 taggcatgac cggtttcgaa gccggcttca atcagctgac gccagatctc tggcagatcg
     3601 tctttctgtg cgccaaacat cgccaggcgc tgggaaccgg tgattttggt gtagagatta
     3661 aattcacgcg cgatacgacc cactgccatc agcccttccg gggtgatttc accgcccgga
     3721 gaacgcggga tcaccgagta ggtcccgtct ttctggatgt tagcgaggaa gttgtcgtta
     3781 gaatcttgca gcggagtatg ttctggcttc agaatgtatt cgttccagca ggaggccagc
     3841 agcgaaccga cggtcggttt acaaacttca caaccgtagc ctttgccgtg tttcgccagc
     3901 agttcttcga aggttttaat gccttcaacg cggatcaaat ggaacagttc ctgacgcgaa
     3961 taagcaaagt gttcgcacag gttgttgtta acttcgatgc cctgtttcgc cagttccgcg
     4021 ttcagtacct gagtgaccag cgggatacag ccaccgcagc cagtacccgc tttggtttca
     4081 gctttcagcg ccgcaactgt gtggcagcct ttgttgatgg cagcaatcag atcaccttta
     4141 gtgacgtcga agcaggagca gatttgcgcg ctgtccggca gtttatcaac accgatagac
     4201 ggcttaccgc tacccgagtg cgccggcaga atcagagaat ccgggttttc cggcagctcg
     4261 atagcattca gcaccagttg cagcaagtta ccgtagtcgc tggtatcgcc caccagtacc
     4321 gcaccgagca gggttttgtt gtcttcgctg acgatcaggc gtttgtagat ctctttgctt
     4381 tcgtcgaggt aaacgtagct acgtgcgcca ggcgtgcgac catgagcatc accaataccg
     4441 cctacgtcca cgcccagcag tttcagcttg gcgctaaggt cagcaccttc aaaggcgttt
     4501 tcgctaccga gaatatggtc aacggcgacc tgcgccattt tgtagccagg tgctaccaga
     4561 ccaaatatac ggttgttcca gcttgcgcat tcaccgatag cgtagatatc cggatcggaa
     4621 gtttggcagg aatcattaat gacgataccc ccacgcggag caacgtccag accacactgg
     4681 gttgccagct tatcgcgcgg acggataccg gtagagaaga cgataaagtc gacttccagt
     4741 tcgctgccgt cggcaaaacg catggtttta cgtgcttcga caccttcctg cacaatctca
     4801 agggtgtttt tgctggtgtg aacgcgcacg cccatacttt cgattttgcg acgcagctgc
     4861 tcgccaccca tctgatcaag ctgttccgcc atcagcatag gggcaaattc gataacgtgg
     4921 gtttcaatac ctaagttttt cagcgcgcca gcggcttcca gacctaacag gccgccacca
     4981 acaacggcac cgcgtttgct gcgacgggcg caggattcaa tggcgttgag gtcttcaatg
     5041 gtgcgataga caaagcagtc ctgagtatca gaacctttga ttggtgggat ccacgggtag
     5101 gaaccggttg ccatgatcag cttgtcataa aaaacggtac gtccggcgct ggagtgaatc
     5161 accttctcct gacggttgat ggtgatagcg cgttcgccga ccagaacttt gatgccgtgt
     5221 ttctcgtaga agccttcgcg caccagcgac agctcttcgg cggtgtggtg agagaagtaa
     5281 gacgagaggt gtacgcggtc ataagcgatg cgcggttctt cacagaaaac ggtaatatca
     5341 aagttggccg catcagattt atcaagaaga tcttcgataa agcgatggcc gaccataccg
     5401 ttaccgataa ttgcgagtct gactttgctc atttttgcct cgatttcttt tctattaccg
     5461 cctaccttaa cgattcagca accccgctta ttgatgtaaa tcaaattcac ctttatatac
     5521 cccttaaggg gtatattgct gatttgtata aattttctta agtcacggaa ttgtctgaca
     5581 tttcatgttt gtgcaaaaaa tagacaaaat gaacgggttt atagaaatag atgcacgtag
     5641 cggggttaga gaggaaaagg ccggacgacg atagtgccgt ccggcattag caattaatga
     5701 gaggtcaggg tgttatgctg acggtgacgg ctgacgaaac ctaacaggaa gcacatcaca
     5761 aagacgacag cgtacagacc gtttgctgta agcagtgccg cctgcggacc gctatgttca
     5821 acaatcgggc cggtaaccac aaaggtcaac atagtaccga tggttccgca ggtcaggaca
     5881 aagttaacca gttttggcga cggtactttg gtctgctgtg aacccagggt gatgatggtg
     5941 gtatagatcg cgctggagaa gaagcccaga gcgagaattg accacgccat atgtgctggt
     6001 gttccggtgt taaagacgta catcagaatc gcagccagac cagccagtac ggtcagaatg
     6061 cgttgcaaat caaagaagcg aagaataaag ctgaacgccc acatgccgac catgtatgac
     6121 atccagaagt tactcaccag cgtgcccgcg tcgttcaggc tcatgcccag gcctttggca
     6181 tactcaggca cccaggagat aaaacctaac tgaccgagga tgtagcacag cgccgcaaca
     6241 gagagaaaca gtacgccgat cccccacttt tctttctcta ccggagcatc cgtttttggt
     6301 gcatgtttgc ccagtgctgg gaactcacag ccgaaggtca gaataaaaat agcgacatac
     6361 accagcccga tgcaggcata aacccagtac cactcaatgc tgcgcgccag tagaaacgcg
     6421 gcgatcattg ggaaaatcat cccagccata ctgaagaagg agtcagtaaa taacaggcgg
     6481 gaaccgcgct gacgcccttc atacatttgt gttatcagga atgtaccaat cgacatagta
     6541 atgccgctga ccaccccgag aatgaacatc gccgtcgaga acagcgccag gctgtggctg
     6601 aacatcaaac cggcaaccgc cagcaccatc aggagaaagc caaaacgtaa ctgcgttttc
     6661 aacgggacga tttccatcag ccaggcgttg aggaagatag agattaaaat gccggcgttg
     6721 aggaaggtga aggtgttact catactggaa acaggcagat tgaaataatc ggcgatattt
     6781 cccatcacca tcccggtgac aataaccaac gcaccagtca gtgcgtagga gagaaagcta
     6841 atccatgtga gcttgatgcg attgctgtta gtcatgattg gcctgcgttc aaaaataaaa
     6901 tggcatagcg ggatatgccg cgagcgggtg attttaggtg attttgtgat ctgtttaaat
     6961 gttttattgc aatcggttgc taaattgcat tttaagaagt gattttgatc acggaataaa
     7021 aagtgatcgt caggttacat atatttcaga tacgtaaaat taggtaaagg gatggccttg
     7081 ttcttgaagg ctatttagaa tctcttcact tgcttttttt ctgctctgtt tgttaaggaa
     7141 atctcatgtt caaatcgacc ctggcggcga tggctgctgt tttcgctctt tctgctcttt
     7201 ctcccgcagc aatggcagcg aaaggggccc cgcacgtatt gttgacaacc tcagctggta
     7261 acatcgaact ggagctggat aaacaaaaag cgccagtgtc tgtgcaaaac tttgtcgatt
     7321 atgtgaacag cggtttttat aacaacacta cctttcaccg cgtcattcct ggctttatga
     7381 ttcagggcgg cggtttcacc gagcagatgc agcagaaaaa accaaacccg ccaatcaaaa
     7441 atgaagccga taacggcctg cgcaacacgc gtggcaccat cgcgatggcg cgtaccgctg
     7501 acaaagatag cgccaccagc cagttcttta tcaacgttgc cgataacgcc ttccttgacc
     7561 atggtcagcg tgatttcggt tacgcggtat ttggtaaagt ggtgaaaggc atggacgtgg
     7621 cggataagat ttcccaggtg ccgactcatg acgttggtcc gtaccagaat gtgccgtcaa
     7681 aaccggtagt tatcctttcc gctaaagtcc tgccgtaatg atttctcgcg cgggcaatct
     7741 tgcccgcgct tctgctctcc cggcgtaacc cggatttgcc gcttatactt gtggcaaatg
     7801 gacacgttca gggaggcatc aagtgaagaa actcaccgat aagcaaaagt cccgtctctg
     7861 ggagcttcag cgtaatcgta atttccaggc cagtcgccgt cttgaaggcg tcgagatgcc
     7921 tttagtcact cttactgccg cagaggcttt agcgcgcctt gtagagctga ggaggcacta
     7981 tgagcgataa attcggcgaa gggcgcgatc cgtatcttta tccaggcctt gatatcatgc
     8041 gtaaccggct gaacatccgc cagcaacaac ggctggaaca ggccgcttac gaaatgacgg
     8101 cgctgcgtgc tgcgaccatt gagcttggtc cgctggtgcg cggtttaccg catttgcgaa
     8161 ctatccatcg ccagctgtat caggatattt tcgactgggc agggcaactg cgtgaagttg
     8221 atatttatca gggcgatacg ccgttctgcc actttgctta tatagaaaaa gagggcaatg
     8281 ccctgatgca ggatctggag gaagaaggtt atctggttgg cctggagaaa acgaagttcg
     8341 tcgagcggct ggcgcattac tattgtgaaa tcaacgtgct gcatcccttc cgggtgggaa
     8401 gtggtctggc acagcggatc ttcttcgagc aactggcgat tcatgccgga tatcaactga
     8461 gctggcaggg tatcgaaaaa gaggcctgga atcaggcaaa tcagagtggg gcaatggggg
     8521 atctcaccgc actgcagatg atatttagca aagtggtaag cgaagccggg gaatctgagt
     8581 aaaatagcgc ggttctttcg taccggagcc gccatgatcc tgcttattga taactacgat
     8641 tcttttacct ggaacctcta ccagtacttt tgtgaactgg gggcggatgt gctggttaag
     8701 cgcaacgatg cgttgacgtt ggcggatatc gacgccctta aaccacaaaa aattgtcatc
     8761 tcacccggcc cctgtacgcc agatgaagcc gggatctccc ttgacgttat tcgccactat
     8821 gccgggcgct tgccgattct tggcgtctgc ctcggtcatc aggcaatggc gcaggcattt
     8881 ggcggtaaag ttgtgcgcgc cgcaaaggtc atgcacggca aaacctcgcc gattacacat
     8941 aacggtgagg gcgtatttcg ggggctggca aatccactta ccgtgacacg ctaccattcg
     9001 ctggtggtgg aacctggctc attaccagcg tgctttgacg tgacggcctg gagcgaaacc
     9061 cgcgagatta tggggattcg ccatcgccag tgggatctgg aaggtgtgca gttccatcca
     9121 gaaagtattc ttagcgaaca aggacatcaa ctgctggcta atttcctgca tctctgattt
     9181 ccgattgcca ttcagtgatt ttttatgcat attttgtgat tataatttca tatttattta
     9241 tgcgtaacag ggtgatcatg agatggcaat tgaacaaaca gcaattacac gcgcgacttt
     9301 cgatgaagtg atcctgccga tttatgctcc ggcagagttt attccggtaa aaggtcaggg
     9361 cagccgaatc tgggatcagc aaggcaagga gtatgtcgat ttcgcgggtg gcattgcagt
     9421 tacggcgttg ggccattgcc atcctgcgct ggtgaacgcg ttaaaaaccc agggcgaaac
     9481 tctgtggcat atcagtaacg ttttcaccaa tgaactggcg ctgcgtcttg ggcgcaaact
     9541 gattgaggcg acgtttgccg aacgcgtggt gtttatgaac tccggcacgg aagctaacga
     9601 aaccgccttt aaactggcac gccattacgc ctgtgtgcgt catagcccgt tcaaaaccaa
     9661 aattattgcc ttccataacg cttttcatgg tcgctcgctg tttaccgttt cggtgggtgg
     9721 gcagccaaaa tattccgacg gctttgggcc gaaaccggca gacatcatcc acgttccctt
     9781 taacgatctc catgcagtga aagcggtgat ggatgatcac acctgtgcgg tggtggttga
     9841 gccgatccag ggcgagggcg gtgtgacggc atcgacgcca gagtttttgc agggcttgcg
     9901 cgagctgtgc gatcaacatc aggcattatt ggtgtttgat gaagtgcagt gcgggatggg
     9961 gcggactggc gatttgtttg cttacatgta ctacggtgtg acgccggata ttctgacttc
    10021 tgcgaaagcg ttaggcggcg gcttcccgat tagcgccatg ctgaccacgg cggaaattgc
    10081 ttctgcgttt catcctggtt ctcacggttc cacctacggc ggtaatcctc tggcctgtgc
    10141 agtagcgggc gcggcgtttg atatcatcaa tacccctgaa gtgctggaag gcattcaggc
    10201 gaaacgccag cgttttgttg accatttgca gaagatcgat cagcagtacg atgtgtttag
    10261 cgatattcgc ggtatggggc tgttaattgg cgcggagctg aaaccacact acaaaggtcg
    10321 ggcgcgtgat ttcctgtatg cgggtgcaga ggttggcgta atggtgctga atgccggacc
    10381 ggatgtgatg cgtttagcac cgtcgctggt ggtggaagat gcggatatcg atgaagggat
    10441 gcaacgtttc gcccacgcgg tggcgaaggt ggttggggcg taaataagac gcatcaggca
    10501 aaatatgtcg gatgcggcgt gaatgcctta tccgatggtt tagcctgtat tacgccttcg
    10561 aatcccgcaa cttgcgactc agccaaatcc cgtgatgcgg tcgctgacgc catgccatcg
    10621 acgaaatggt gtgcatggtg ttcagatgac caataacccg ctgtaaatgc tgctccagcg
    10681 tacctgccgc gccttcgtgc ggctgcatct ccggcgcatc catgatattg gcatcgccag
    10741 aactacccgg ttcgtcatac tccagtcgct gctgacaacg ctgaatggcg atttcacaag
    10801 actgtaaata ctcttgtgcc agttcaggtg gcaatgcccg gtgttcccgc gccagcgtgg
    10861 tcatggcatt aatatgctca acaataaact ggctgtgcgt tacccacagt ttcatatctg
    10921 ccagataatg gctgttaaac gccggttcct gcatcgcctg attcaatgag ttatacagag
    10981 tgttatgtgc ctgatttacc cgcattcgct gccaggccag tggcgtaggt tgcggatcct
    11041 cgctaagaat caagcgaatc gcttcctgat aggcttctaa agcgtcatgg gcgtttttac
    11101 gcaataaccc gctctgccac tgcggccaca gccagacagt accgccgaaa gcaattaaac
    11161 aaccaataat ggtatcgata agacgcggaa ggatgtattg ctcgccgttc aaccacaata
    11221 gttgcagggt atacactgcg gtaatagtaa aaccgaccgt cgcccagccg tagtttttgc
    11281 gcaatatcag gtagctggcg agggtggtaa tcagcatcaa cgtcagggtg taaccttcgg
    11341 gaattttaaa gtgcagcgcc acgcccgcaa tgattaaccc gaccacggtt cccacggagc
    11401 gattcacaat cctcagacgg gttgcgccat agccattttg tgtcaccagc aataccgtca
    11461 tcaggatcca gtacgacttc ggcagatgca gcgcggtgcc catcaggctg gcaacgctta
    11521 acatcacact gagtcgtccg gcattgcgta gcgccggaga ctttagtgac agataacttt
    11581 tcagcgcagg aagtaatggc attcgccgct gtttatcggc cagtaagtca cgggcataga
    11641 gcggtttttg ggtgcgcagc acgcgggcga tgcggctgaa atgccagtag cagaattgcc
    11701 caaccggatt atccggatgc tggcgggcga ttttttccag tgcgccaatt tgcttttcca
    11761 tcgtaaaacg cgttggcagg cgatggtaaa gaatgtcatc agccagcacg cgcaggcgag
    11821 cggcgacggt ttgcgcattc cagcggataa cttcttccgc atggctacgc tcgaccagct
    11881 tttgcacctc ttccggctga tgcaaactga ccgaaatatg ttcctgtaaa tccagcgcct
    11941 cctggaaaat acgcagcatc cgcttgtagt cagtattatt ttgcgcggaa agcatatgca
    12001 tttgctgata gcactgggta attagatcga ccgctttttg ctggcgcacc agcagcggcg
    12061 gcagcgcttt ttcagggtcg gtgtgctggg taagcaggct gtatttggct tcacaataat
    12121 ctgccagttc acggtacagc agacttagtg actcgcgcag cggttgttcg cgccagatcc
    12181 agaaccaaaa ccagttaaac aatccgtacc agagagtgcc caacgcatag atgagcaacg
    12241 gttcccagac cggcatgtat cccgccagac tgagggtaaa aatggctgcc agcagcgatg
    12301 cgggaagcaa ttttgcgtgc aatggcccca actcagcagt gacgccaagt accagcgtta
    12361 atccggtcag caaaaagggc aggggaacat cttttgccag tagcagctgt gtcagtaagc
    12421 tacaggtggc aaacagcgac gcaccaatga ttaagcgttt gaaaaaacgt ttatgaggcg
    12481 tatcaaggcc cgcaatattg caacaggcag gaacgagaga gaagagcaga ccgaatcgta
    12541 attcgccaag cattaaccca acggccacgg gcaaacatag caccagcgtt tgtcgaagtg
    12601 catagttgat atcggggtga taaatcagtc tgcgccacat cgggggaaac aaaatggcgc
    12661 gctaccaggt aacgcgccac tccgacggga ttaacgagtg ccgtaaacga cgatggtttt
    12721 accgtgtgcg gagatcaggt tctgatcttc aagcatcttc agaatgcgtc ccacggtttc
    12781 acgagaacag ccgacaatct gaccgatttc ctgacgggta attttgattt gcataccgtc
    12841 cgggtgagtc atagcgtctg gttgttttgc cagattcagc agagtctgtg caatgcggcc
    12901 cgtcacgtcg aggaacgcca ggttgcccac tttctctgaa gtgacttgca gacgacgcgc
    12961 catctgtgca gacagacgca tcagaatgtc cgggtttacc tgaatcaatt ggcgaaattt
    13021 tttgtacgaa atttcagcca cttcacaggc ggttttcgca cgtacccatg cgctacgttc
    13081 ctggccctct tcaaacaggc ccagttcgcc aataaaatca ccctgattca gataggagag
    13141 gatcatttct ttaccctctt cgtctttgat cagcactgcc acagagcctt taacgatgta
    13201 gtacagcgtt tccgcttttt caccctggtg aataagcgtg ctcttggatg ggtacttatg
    13261 aatgtggcaa tgagacaaga accattcgag agtcgggtct gtttgcggtt tgccaagcac
    13321 catgcgcggt tatcctctgt tataagcttt ctccagagcc agataacgcc gctgtctctg
    13381 gattgccgaa atatgcttcc cgctacctgg gaaggggcta tcaactgtac tgcacggtaa
    13441 tgtgacgtcc tttgcataca tgcagtacat caatgtatta ctgtagcatc ctgactgttt
    13501 tagcatagct ttcgctttgt gtctcctggt gtctcgcttc agcatgaccc aggtcgcctt
    13561 ccgttgcgcg atttggttag tacgcg
//
LOCUS       DAJVUY010000108        13521 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.108, whole genome shotgun sequence.
ACCESSION   DAJVUY010000108 DAJVUY010000000
VERSION     DAJVUY010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13521
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.108"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..187
                     /locus_tag="OQQ72_002862"
     CDS             <1..187
                     /locus_tag="OQQ72_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS2012519.1"
                     /translation="CWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELL
                     NRRLSESVPCMPHKKAG"
     gene            208..909
                     /gene="mlrA"
                     /locus_tag="OQQ72_002863"
     CDS             208..909
                     /gene="mlrA"
                     /locus_tag="OQQ72_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MlrA"
                     /protein_id="HCS2012520.1"
                     /translation="MGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIK
                     RWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYP
                     AQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARRKQGKDALVVGW
                     NIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
                     TSWQEQGHDIFPLGI"
     gene            969..1076
                     /locus_tag="OQQ72_002864"
     CDS             969..1076
                     /locus_tag="OQQ72_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HCS2012521.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
     gene            complement(1057..1788)
                     /gene="yehW"
                     /locus_tag="OQQ72_002865"
     CDS             complement(1057..1788)
                     /gene="yehW"
                     /locus_tag="OQQ72_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HCS2012522.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFVVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(1793..2719)
                     /gene="yehX"
                     /locus_tag="OQQ72_002866"
     CDS             complement(1793..2719)
                     /gene="yehX"
                     /locus_tag="OQQ72_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HCS2012523.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVCREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPCGTLHFQDLLEEA"
     gene            complement(2712..3869)
                     /gene="yehY"
                     /locus_tag="OQQ72_002867"
     CDS             complement(2712..3869)
                     /gene="yehY"
                     /locus_tag="OQQ72_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HCS2012524.1"
                     /translation="MTYFRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND"
     gene            complement(3876..4793)
                     /gene="osmF"
                     /locus_tag="OQQ72_002868"
     CDS             complement(3876..4793)
                     /gene="osmF"
                     /locus_tag="OQQ72_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
                     /protein_id="HCS2012525.1"
                     /translation="MPLSKVWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII
                     LQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQ
                     QGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTF
                     KLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMA
                     YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTL
                     QQLNASIAVEGLDAKKVAADYLKQKGWTK"
     gene            complement(5045..7342)
                     /gene="bglX"
                     /locus_tag="OQQ72_002869"
     CDS             complement(5045..7342)
                     /gene="bglX"
                     /locus_tag="OQQ72_002869"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HCS2012526.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPFTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMEELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDMVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            7538..9253
                     /gene="dld"
                     /locus_tag="OQQ72_002870"
     CDS             7538..9253
                     /gene="dld"
                     /locus_tag="OQQ72_002870"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS2012527.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPSSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALQRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            complement(9292..10224)
                     /gene="pbpG"
                     /locus_tag="OQQ72_002871"
     CDS             complement(9292..10224)
                     /gene="pbpG"
                     /locus_tag="OQQ72_002871"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HCS2012528.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAAITASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(10398..10985)
                     /locus_tag="OQQ72_002872"
     CDS             complement(10398..10985)
                     /locus_tag="OQQ72_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HCS2012529.1"
                     /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA
                     FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS
                     LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE
                     EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF"
     gene            11155..11733
                     /locus_tag="OQQ72_002873"
     CDS             11155..11733
                     /locus_tag="OQQ72_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2012530.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            complement(11863..12624)
                     /locus_tag="OQQ72_002874"
     CDS             complement(11863..12624)
                     /locus_tag="OQQ72_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS2012531.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(12677..>13521)
                     /gene="mdtQ"
                     /locus_tag="OQQ72_002875"
     CDS             complement(12677..>13521)
                     /gene="mdtQ"
                     /locus_tag="OQQ72_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001583680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HCS2012532.1"
                     /translation="AALNTVLQQIEKEQNTIIATDRQLYQNGITSSVEGVETDINASK
                     TRQQLNDVAGKMKIIEARLSALTNNQTKSLKLKPVALPKVASQLPDELGYSLLARRAD
                     LQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLTL
                     PIFDSGRLNANLDIAKAESNLSIASYNKAVVEAVNDVARAASQVQTLAEKNQHQAQIE
                     RDTLRVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALGG
                     GYKR"
BASE COUNT         3238 a         3779 c         3415 g         3089 t
ORIGIN      
        1 atgctggtca cttgccgcag gagctaatcc tagttttatc gcaagccaga tgggccacac
       61 aaacgcacaa atggtattca atgtttacgg agcatggatg aaagacaaca atcacgaaca
      121 gatagaactt cttaacagaa gactatctga aagtgtccca tgcatgcccc ataagaaagc
      181 ggggtaaaat aaaaacttgc aaaatcaatt ggtttacctt taatccctgt cacgttacgc
      241 gcgtggcaga ggcgttacgg gttgctgaaa ccgcaacgga cagacggcgg tcatcgactg
      301 ttcaacgatg ccgatattga ccggatccgc gagatcaaac gctggatcga caacggcgtg
      361 caggtcagca aagttaaaat gctgctcagt aatgaaaatg ttgatgtgca gaacggctgg
      421 cgcgatcagc aagaaacatt actgacctac ctgcaaagcg gcaatctgca tagcctgcga
      481 acgtggatca aagagcgcgg tcaggattac cccgcccaga cactcaccac acatctgttt
      541 attcctctgc gccgacggct tcagtgccaa caaccgactc tccaggcgct gctggcgatc
      601 ctcgacggcg tactgatcaa ctacatcgcc atttgtctgg cttcggcacg tagaaaacag
      661 ggtaaagatg cgctggtggt tggctggaat attcaggata ccacccgtct gtggctggag
      721 ggctggattg ccagtcaaca aggatggcgc attgatgtcc tcgcccactc gctcaatcaa
      781 ctacgccctg aactattcga aggccgtaca ttgctggtgt ggtgcggtga aaatcgaacc
      841 tccgcccaac agcagcaact caccagttgg caagaacaag gccatgatat tttcccactc
      901 ggcatttaat gattcgttaa caaatgcgct ttactgtaca atcctttcgt taacataagg
      961 agtgcaatat gcgcatagct aaaattgggg tcatcgccct gttcctgttt atggcgttag
     1021 gcggaattgg tggcgtcatg ctcgcaggtt atacctttat tttgcgtgct ggctaagcgc
     1081 ctgcaccagc ctttcaaaca ggcggtctgc aatgatcgcc gccagtgcca ccagtaacgc
     1141 cccctggatc acatacgcgg tattaaatcc gctaagcccg atgatgatgg gcgtacccag
     1201 cgtgctggcc cctaccgttg aggcgatcgt cgccgtacca atgttgataa tcaccgaagt
     1261 tcgcacgccc gccagaatca ccggagccgc cagcggtagc tcgaccttac gcagtcgctg
     1321 accacgactc attcccatac ctttcgcaac ttctgtcacg ctggcatcaa tcgctcccag
     1381 cccggcaagt gtcgcctgca ggacgggcag cacaccgtaa aggatcaagg cgataatcgc
     1441 tggttgcaga ccaaagccga tcaccggaac ggcaatcgcc agcactgcga caggcggaaa
     1501 agtctgtcca acggcggcaa tagtttccac cagtgggcga aattccgcgc cccacgggcg
     1561 agtgacagca attccggcac cagtgccaat gatcaccaca aacaaactcg aaattcccac
     1621 cagccagaaa tgagccagtg ccagagctgc aaaactttct tgctgataaa cgggtcgtgg
     1681 cagttgtggg aacaaggcag caaacagcgg ctggctgtaa ggcagccaga aaatcagtgc
     1741 cacaaacaaa gcaatgagcc agaacagcgg atcgcgcaac atcttcatac gcttacgcct
     1801 cctccagcag atcctgaaaa tgcagcgtgc cgcaaggctg gccctgcgtg ttcaccaccg
     1861 gcagcacctc gcatccccgc gcgacaaaca gggagagcgc atcgcgtagc gtcatctctt
     1921 ctgccagtgc ctcaccttct gcccgttctt cgcgacacac gtaatccgcc acactacgta
     1981 acgaaagcag gcgcacaccc agttcgctgc gcccaaaaaa ctggcggaca aaatcgtttg
     2041 ccggacgagt cagcatcgtc agcggattgc cctgctgcac cacttcaccg tgatccatca
     2101 ataccagatg ttctgccagc cgtagcgcct catcaatatc atgagtgacc agcacaatgg
     2161 tacgccccag caaacggtga atgcgcgtca tctcttgttg caacgcgccg cgcgttaccg
     2221 ggtccagtgc gccaaaaggt tcatccatca gtaagacttg cggatcggca gccagtgcgc
     2281 gcgccactcc cacacgttgc tgctgaccac cggaaagctg atgcggataa cgctcacgta
     2341 aatttgactc cagccccagt agcgccatta attcgtcgat acgatcgtca atccgcgccc
     2401 gcgaccattt ttgtaattgc ggcacggtag cgatgttttg cgccacgctc cagtggggga
     2461 acaggccaat agattgaatg gcatagccca tccggcggcg caactccagt actggcagcg
     2521 agcgaatttc ttctccggca aagcggatca ctccgctgtc atgctccacc aggcggttaa
     2581 tcattttcag ggtggtggat ttgccggagc cagatgtgcc aatcagcacc gaaaaactcc
     2641 cttcctgaaa attgagattg agatcgttaa cggctttttg tgcgccgaac agtttgctga
     2701 catggctaaa ttcaatcatt acgtttcacc ttcagcagtg cgataagcaa atcgaacagc
     2761 gcgtcggtaa gcaccgccag aacaattacc gggatcaccc ccagcaacac taaatcaatg
     2821 gcgctgctta gcagcccctg gaaaaccagc gcaccaaaac cgcctgcgcc gattaacgcc
     2881 gcaatcaccg ccatacctac agtttgcacc atcaccaccc gcaggctgcg cagaaatacc
     2941 ggtaacgcca gtggtaactg aacatgcagg aatcgctgcg ccccgctcat gcccatcgct
     3001 ctggcactct ccagcacatc gcgcgggatc tggttcaaac cgactaccac gccgcgcacc
     3061 agcggcagca aggcatagag caccagcgca atcagtgcgg gtgtcattcc ggttcctgct
     3121 atgccgagct tccccagcca cggaaaggcc gtcaccagcg cggcaagcgg cgcaatcaac
     3181 aggccaaaga gcgccaccga aggcacggtc tgaatgacat tgagcagaga aaaaattgcc
     3241 ccctgccgag cagtggaaaa gtagcaccag atgcccaacg gcacaccaat cactaacgca
     3301 ggcagcaccg caccaaacag caacgtcaga tgttgtgcca gcgcgtcgtc aaacacatcc
     3361 tgacggttgg cgtattcttt cattagtgag agatcgttaa gcgtgccgga gtacagcaac
     3421 cacagcggaa taatggcaat ctgcatatgc aacaaccagc gccacagcgg atgcgtggag
     3481 attcggcgga tggcatcgct acaggccagc aatgccagcg ccgcagccag ccagaaacca
     3541 ctgccgaggc tggtacgcgc cagcgcactg ccattttgcg ccagttgtgt cgccgccttt
     3601 cccgcgcccc acaccagcaa tacgaagacg aattgcgcca gaatgagtgc acaaatgctg
     3661 ccttttttac cgggaataaa acaggccgtc agccaggcgc aaccaacgcc caccagcatc
     3721 cagatcgttt gcggccacag ctgccagaga tgacgcccct cacccgaaac taaacgatta
     3781 ggcgcgtaac tgataaacgg cagcgccgct gcgattgccg tcagcaacag cagcagcgcc
     3841 agaacaggat taatacggaa ataagtcacg ggaaattact tcgtccaccc tttttgtttc
     3901 aggtagtcgg cagccacttt tttggcatcc agtccttcca cagcaatgct ggcattcagt
     3961 tgctgcaatg tttttgcatc gaggctggcg aagactggct gtagccactg tgccatttgc
     4021 ggatactcct tcaacaccga ctcacgcacc actggtgcag gcgcgtagat aggttgcaca
     4081 ccttgcggat cgcttaaggt ttgcagcccc agcgccgcta ccgggccgtc agtgccgtaa
     4141 gccattgcag cattaacgcc agagatttgc tgggcagcgg ctttgatcgt caccgccgtg
     4201 tcgccaccag ccagtgacag caactgatcc tgaccgagct taaagccata ggctttttca
     4261 aacgcgggta acgcatcggc gcgttcgata aactctgccg aggctgccag tttgaaggtg
     4321 ccgccctctt tcagataacg actcaggtcg gcaagcgaag tgagtttatt tttctctgcc
     4381 acatcctgac gcacggcgat agtccaggtg ttatttgcag gcgcgggcgt cagccagatt
     4441 aacttgttgt gctccgaatc gagctttttg actttctcgt aaccttgctg cgcgtttttc
     4501 cacgctgcat cgttttcatc tttaaagaag aaagcgccat tgccggtata ttccggatag
     4561 atatccagtt caccggaagt aatcgccccg cgcaccacag gagtcgttcc gagttgcact
     4621 ttattcaccg tcggtacgcc gtggctttcc agcacctgca agatgatgtt gccgagtagc
     4681 gcgccttcgg tatcgatttt tgaaccgact ttaacggggg aagccgcctg tagcggcagg
     4741 ctcacggctg ccaacataac cagtgaacct gcccagacct ttgagagtgg catgatgctt
     4801 tcctcattct tttactgttg ttttcagcga attaagagaa aagcatagtt gataatgaca
     4861 gagttagcct gagcggaagg attcagttgc agaatcagat aaatacttaa agggcatatt
     4921 ttgcccggcg tttcttgccg gatgcggcgt aaacgcctta tccggcctac aaaggtcgaa
     4981 aattcagcaa gttaagatat gaacatcagg caaagggcgc aaacgtcgcg cccttactaa
     5041 agcattacag caactcaaac tcgcctttct taacgcgtgc ggaatcagtg ccgataaaga
     5101 cattgaactt gccaggctcg gcgtcatatt tcatctgttg attccagaac ttcagcgcct
     5161 cgatatcaat cgggaagctg acagtctgag tttcgcccgg tttcagggtg attttctcaa
     5221 agcctttcag ctgcttcact ggacggctca tggaagccgt cacatcctgc aagtacatct
     5281 gtactaccgt ggccccttcg cgtttaccgg tgttcgtcac ctgcacgctg gccgtcactt
     5341 tgccgtcacg cttcatggtc ggcgcagaaa gtttcacatc agagacggtg aaagtggtat
     5401 agctcagacc atagccgaac ggataaagcg ccccgttagc ttcatcaaaa taacgcgaag
     5461 tgtatttgtt cggcttgtcg gcattatacg gacgaccggt gttcagatgg ctgtagtaca
     5521 ccgggatctg cccgacagaa cgcgggaagg acatcggcag cttgccggac gggttgtaat
     5581 cgccaaacaa cacatcggca attgcattac cgccttcagt ccccgcaaac caggtttcca
     5641 gaatcgcatc agcctgctga tcttctttca ccagcgccag cggacgcccg ttcatcagca
     5701 ccagcaccag cggtttaccg gtggctttca gcgccgcaat caagtcacgt tggctttgcg
     5761 gaatagtgat atcggtacgg ctggaggcct cgtgcgccat cccctgtgct tcaccgacca
     5821 cagccaccac catatcagat tgtttcgccg tctgcaccgc ttcatcaatc atctcttgcg
     5881 gcgagcgcgg atcgactttg accgcttctt catactgatt caggaaatcg ataatgcctt
     5941 tgtcactggt aacgttcgcc cctttggcat acagcacttt accgttttca ccgacggcat
     6001 ttttaatccc ggtcagtacg gtcacggatt gatcggcaac accggctgcg gaccagctgc
     6061 ccatcacgtc gcgtttactg tccgccagtg gcccaaccac cgcaatggtg gccgattttt
     6121 tcagcggtaa cgtttcgaga cggtttttca gcaacaccag gctttcgcgc gccacttcac
     6181 gtgcttcttt acggtgcagg cggctttcgg cattggtatc caccgggtca gactctttcg
     6241 gccccaaatg gctgtatggg tcgttaaaca atcccatatc atatttaacg ttcagtacat
     6301 ggcgggcagc atcgtccagc tcttccatcg tcactttgcc ggatttgatc aacccaggca
     6361 gatacttcga gtaatactcg tcgctcatac tcatgttgat tccggatttc agcgccacgc
     6421 gcaccgcatc ttccgggtct gccgccgtgc catgtttaat cagctctttg attgcaccgt
     6481 gatcggaaac ggtgatgcct ttaaagcccc actggtcgcg cagaacatct ttcagcagcc
     6541 aggaatcgga ggtggctggc gtgccgttca gcgagttcag cgccaccatc accgcgccgc
     6601 tgcctgcgtc cagccccgct ttgtacggcg gcatataatc attaaacagg cgctgcggac
     6661 tcatatcgac ggtgttgtac tctttaccgc cttctaccgc gccgtatgcg gcaaagtgtt
     6721 tgacgctggt catcaccgag tagcgatctg ccgggctttt accctgcatc gcttccacca
     6781 tggttttacc cattgttgag gtgagatacg tatcttcgcc aaaaccttcg gaagcacgtc
     6841 cccagcgcgg atcgcgcgag acatcgacca tcggtgccca ggtcatattc aggccatcat
     6901 ctgccgcttc ataagcagag acacgtccga ccgttttcac tgcatcgagg ttaaaagacg
     6961 aggccagacc gaggctaatc gggaacaccg tgcgctgacc gtgcagcacg tcgtaagcaa
     7021 agaaaagagg aattttcagg cggcttaatt ccatcacctg atcctgcatg gcgcggatat
     7081 cctgacgggt tacggtgttg aaaatcgccc caacctgacc gtctttgatc atctcgcgga
     7141 tcgcctcttt cgggttatcc gggccgacgc tgattaagcg cagctgacca attttctcat
     7201 caactgtcat tttcttaagc aattcggtga cgaacgcatc ccgcgcttcg ggcgtgaatg
     7261 gatggttgcc gaataaatca tccgccagtg ctggctgcag ggccagactc accgcgattc
     7321 ctactgaaca tagccatttc atatggattt ttcttcctct gttgcccgac gaggcagcga
     7381 aaatggtgca aaaaccgtag tttgccataa gcatgatgga gagagaaaaa gaatgctcag
     7441 tttattgtct gaattttcaa aatattcact cgctgaattg tcatacaagg cgctattcta
     7501 gtttgtgata ttttttcgcc accacaagga gtggaaaatg tcttccatga caacaactga
     7561 taataaagcc tttttgaatg aacttgcccg tctggtcggt cattcacacc tgctcaccga
     7621 tcccgcaaaa acggcccgct atcgcaaggg cttccgttct ggtcagggcg acgcgctggc
     7681 tgtcgttttc cctagctcac tactggaatt gtggcgggtg ctgaaagcct gtgtcaccgc
     7741 cgacaaaatt attctgatgc aggctgccaa tacaggcctg accgaaggat cgacgccaaa
     7801 cggtaacgac tatgatcgcg atatcgtgat catcagcacc ctgcgtctcg acaagctgca
     7861 cgttcttggc aagggcgaac aggtgctggc ctatccgggc accacgctct attcgctgga
     7921 aaaagccctc aaaccgctgg gacgcgaacc gcactcagtg attggatcat cgtgtatagg
     7981 cgcatcggtc atcggcggta tttgtaacaa ctccggcggc tcactggtgc aacgtggccc
     8041 ggcgtatacc gaaatgtcgt tattcgcgcg tataaatgaa gacggcaaac tgacgctggt
     8101 gaaccatctg gggattgatc tgggcgaaac gccggagcag atccttagca agctggatga
     8161 tgatcgcatc aaagatgacg atgtgcgtca cgatggtcgt cacgcccacg attatgacta
     8221 tgtccaccgc gttcgtgata ttgaagccga cacgcccgca cgttataacg ccgatcctga
     8281 tcggttattt gaatcttctg gttgcgccgg gaagctggcg gtctttgcag tacgtctaga
     8341 taccttcgaa gcggaaaaaa atcagcaggt gttttatatc ggcaccaacc agccggaagt
     8401 gctgaccgaa atccgccgtc atattctggc taacttcgaa aatctgccgg ttgccgggga
     8461 atatatgcac cgggatatct acgatattgc ggaaaaatac ggcaaagaca ccttcctgat
     8521 gattgataag ttaggcaccg acaagatgcc gttcttcttt aatctcaagg gacgcaccga
     8581 tgcgatgctg gagaaagtga aattcttccg tccgcatttt actgaccgtg cgatgcaaaa
     8641 attcggtcac ctgttcccca gccatttacc gccgcgcatg aaaaactggc gcgataaata
     8701 cgagcatcat ctgctgttaa aaatggcggg cgatggcgtc ggtgaagcca aatcgtggct
     8761 ggtagattat ttcaaacagg ccgaaggcga tttctttgtc tgtacgccgg aggaaggcag
     8821 caaagcgttt ttacaccgtt tcgccgctgc gggcgcagca attcgttatc aggcggtgca
     8881 ttccgatgaa gtcgaagaca ttctggcgtt ggatatcgct ctgcagcgta acgacaccga
     8941 gtggtatgag catttaccgc cggagatcga cagccagctg gtgcacaagc tctattacgg
     9001 ccattttatg tgctatgtct tccatcagga ttacatagtg aaaaaaggcg tggatgtgca
     9061 tgcgttgaaa gaacagatgc tggaactgct acagcagcgt ggcgcgcaat accctgccga
     9121 gcataacgtc ggtcatttgt ataaagcacc ggagacgttg cagaagtttt atcgcgagaa
     9181 cgatccgacc aacagtatga atccggggat cggtaaaacc agtaagcgga aaaactggca
     9241 ggaagtggag taaaaattac ggatggcata gtatcgccat ccgtcattca cttaatcgtt
     9301 ctgtgccgtc tgccccgccg ccgccatttg ggcggctttt tgttttttat agctcaacgc
     9361 tgctgctgga acaggcatca ctttaccggt ttcaatccag gtacgcaggc ggctggcatc
     9421 ggcaaaatgg gtatatttgc caaacgcatc catcactacc agcgccaccg gtttattatt
     9481 gataaccgta cgcatcacca gacaatggcc cgccgcattg gtaaaaccgg ttttggttaa
     9541 ctgaatattc cagttatcgc gatacaccag atggttagta ttgcggaacg gcagcgtata
     9601 cgtcgggtta gagaaggttg ccatatcttc ccgggtagta cttaactgcc cgatcaacgg
     9661 atattgtttg ctggcaatga gcagtttggt taagtcacgg gcagttgaaa cgttatgcac
     9721 cgacaatccg gtaggttcaa caaagcgcgt gttgttcatt ccgagcgatt tcgctttcgc
     9781 attcattgcc ttaataaagg ctttgtaacc accgggataa tggtgtgcaa ggcttgccgc
     9841 cgcgcggttt tctgaagaca tcagcgccag caacagcata tctttacggc tgatttcgct
     9901 attcagtcgt acgcgcgaat agaccccttt catctccggc gtctggctga tatccacttt
     9961 tagtttttca tccagcggca gtcgtgcatc cagcacaacc atcgcggtca ttaatttgct
    10021 gatagacgca atcggacgca ccagatccgg gtggttcgag tagatcactt tgttggtatt
    10081 cagatcaaca atcatcgcgc taccggaggc aatttcaggt tgtgaagcgg tgatagcggc
    10141 tgccgttttc gcaacggcct gcggtgccaa aggcacagcc agcatcaggg ccaggctaaa
    10201 taaagaaact cgaaatttcg gcatgatgag cattcagata gtggttcacg cgcacaggtt
    10261 gcgcaccgcc ggagtaagga tttactgagg ctagcgacgc catcataacg agcaaaaagt
    10321 gcgatcgtca aaggagaatc gtgaggaaat gctgcattgc tgacatttac gccagcaatg
    10381 caacgtcaaa gaactttcta gaacaaacga taaccgtagc cccatagtat aacggttagg
    10441 gcgagcagca cttccagtac cagcacgcca atcgccagcg tcgaactaga gaagctaagg
    10501 ccttcctctt tgttgatatt caggaagctc ggaataccaa ggtaaagcag gtagccggtg
    10561 taaaacagcg ccaccgtgcc gaccagcgca cacaaccaga ccagtggata aagcgccacc
    10621 aaaccgctta aaaacagcgg agttgcaacg tagcccgcga agaccatgca gtgcgcaagt
    10681 gacggacgct gcggataatt acgcgccatc caccagatga cccgccccat taccgcaacc
    10741 ccagccagca taacgccata aaacaggaca gccagcgcca gtccggtaaa ccaggataac
    10801 ttcaggatag tgccatcgcc aaaattccag ccaatctgtg tagtgccaat gaaggcgcaa
    10861 atcaccggaa tcgccgccat cagcaaaacg tggtgggtgt aatggtgaga aatcgtttcg
    10921 ttttcgcgat taatcacctg catttcacga tcgggatggg aaaacagtcc ccagacatgg
    10981 ctcataccgc ccccttgttg tgagttcatg aacctgacag ttcaagtata agtcagcttg
    11041 tgattatttt ttgttcgctc atgtaatttg caccgtctga tgtacgtcct ttttcagcgt
    11101 gaatgatttc cagggtgtat gcttacaggc aaccaaaggg agacagactg gcctatggat
    11161 ctcaatacac tcatctcaca atatggttat gccgcgctgg tgatcggtag cctggcggaa
    11221 ggtgaaaccg tgactttgct gggaggcgtt gcggcacatc aggggctatt aaagttcccg
    11281 ctggtggtac tttctgtggc gcttggcggc atgattggcg accaggtgct ttatctgtgc
    11341 gggcggcggt ttggcggcaa gctgttacgc cgtttctcga aacatcagga taaaattgag
    11401 cgggcgcaga aacttatcca acgccatccg tatctgtttg tcattggtac gcgctttatg
    11461 tatggctttc gggtgattgg cccgacgctg attggtgcca gccagctgcc gccgaaaatc
    11521 tttctgccgc tgaatattct cggcgcattt gcctgggcgt tgatttttac cactattggt
    11581 tacgctggtg gtcaggtgat tgcgccgtgg ttgcacaatc tcgaccagca tttgaagcac
    11641 tgggtctggt tgattctggt cgtggttctg gtggtgggcg tgcgctggtg gctgaaacgg
    11701 cgcgggaaga aaaagccgga tcatcaggcg taaaaccatt gccctgggta aggcgttcgc
    11761 gccgcatccg acatccggtg caccatgcct gatgcgacgc ttgtgcgtct tatcatgcct
    11821 accaaaattt tacccattga aataaccacg cacctcactg cgctattctg ggttgaactg
    11881 cggattcgcc aacataaagc cgccatccac tatcaacgac tgcccggtgg tgtaatttgc
    11941 gccctctgag cacagccacg ctaccaggct ggcaatctca tgcgttgcgc caaaacgccg
    12001 cagaggaatc gaaggctccg cgtcgggctt cacgtcgctg tcatccatgc cattcattgg
    12061 cgtggcgatc gccccaggcg cgactgcgtt caccaaaatc ttatgcctga ccagctccag
    12121 cgccatcgct ttggttaacc caccgagcgc atgtttagcg gctgtgtagg cgctggcatc
    12181 cggcagcggc gtatgttcat gtaccgatgt aatgttgatg atgcgaccgc cctgcccttg
    12241 tttcaccatc tggcgggccg caatttgtga gcataaaaat gcaccatcga catcaacggt
    12301 aaaaatcttg cgccactcat cgaaagccat atcaagaaac ggcgctttgg tcattgcgcc
    12361 cgcattattc accagcacat caatacgccc cagccgttga atgagtttct ccagcgcctg
    12421 cgcaccttct ggcagtttac cgagatccag ctgcacgatc tccgcacgta cgccgtggct
    12481 aactacctca cgcgcggtat cttttgcccc ttcttcatct gagtgccagg taatgccaat
    12541 atcaaaccct tgctgcgcca gtaataacgc gcactctttg ccgatccccg aatcggaggc
    12601 ggtaataatc gcaacctgtg ccatcgagtt ctccacttaa cgctgaataa acgttaagta
    12661 tagaaggcgc atatcatcag cgtttgtaac ccccgcccaa cgcaccagtg agttgaatgg
    12721 aggcatccag ccactgccct tgcaataaca ggccattggc ccgctcacgc agcgcgggga
    12781 ttctggcttc gctgacgcgg gaaccagcaa tgatgcccgc gttaaagcgc gcctgcgcaa
    12841 gacctaccac acgcaaggta tcgcgctcaa tttgcgcctg atgctggttt ttctccgcaa
    12901 gtgtctgaac ctgactggct gcccgcgcca cgtcattcac cgcttcaacc accgctttgt
    12961 tgtagctggc gatagacaag ttgctttcgg cttttgcgat atcgagattg gcgttaagac
    13021 gaccactatc gaaaatgggt agcgtcaggc ctgccgtaac gcccatttgc tgcgcggaat
    13081 gacggaacag atcgcttaag tgcaacgcat cctgttgcag gaaggccatc aggttgatgt
    13141 caggataaaa tgccgctttt gccgcatcaa tggtgcttag cgatgactca acgtaccagt
    13201 gcgccgcctg caaatctgcc cgccgggcca gtaaggagta ccccagttca tcaggaagct
    13261 ggcttgccac tttcggcaac gcgaccggtt taagcttcaa tgactttgtc tggttatttg
    13321 taagtgcgct taaccgtgcc tcaataattt tcattttccc cgcgacatcg ttgagctgct
    13381 gccgggtttt gctggcatta atatcggttt ccacaccttc aactgaagaa gtaatcccgt
    13441 tctgatatag ctggcgatcg gtcgcgataa tggtgttctg ctctttttct atttgctgca
    13501 agaccgtgtt taacgccgcc t
//
LOCUS       DAJVUY010000109        13509 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.109, whole genome shotgun sequence.
ACCESSION   DAJVUY010000109 DAJVUY010000000
VERSION     DAJVUY010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.109"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(173..919)
                     /gene="cutC"
                     /locus_tag="OQQ72_002876"
     CDS             complement(173..919)
                     /gene="cutC"
                     /locus_tag="OQQ72_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HCS2012533.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(933..1499)
                     /locus_tag="OQQ72_002877"
     CDS             complement(933..1499)
                     /locus_tag="OQQ72_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS2012534.1"
                     /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            1715..3448
                     /gene="argS"
                     /locus_tag="OQQ72_002878"
     CDS             1715..3448
                     /gene="argS"
                     /locus_tag="OQQ72_002878"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCS2012535.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            3625..4113
                     /locus_tag="OQQ72_002879"
     CDS             3625..4113
                     /locus_tag="OQQ72_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HCS2012536.1"
                     /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDT
                     DINVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGVKKPDIEQLNLLKKSQRAWL
                     DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT
                     RG"
     gene            complement(4233..4625)
                     /gene="flhe"
                     /locus_tag="OQQ72_002880"
     CDS             complement(4233..4625)
                     /gene="flhe"
                     /locus_tag="OQQ72_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HCS2012537.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(4625..6703)
                     /gene="flhA"
                     /locus_tag="OQQ72_002881"
     CDS             complement(4625..6703)
                     /gene="flhA"
                     /locus_tag="OQQ72_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HCS2012538.1"
                     /translation="MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFIL
                     DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT
                     GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGM
                     PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI
                     NVVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD
                     VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGCEQKA
                     PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK
                     KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP
                     GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE
                     AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP
                     IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGL
                     ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH
                     IRMTATIGGK"
     gene            complement(6696..7799)
                     /gene="flhB"
                     /locus_tag="OQQ72_002882"
                     /pseudo
     CDS             complement(6696..7799)
                     /gene="flhB"
                     /locus_tag="OQQ72_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(7882..8526)
                     /gene="cheZ"
                     /locus_tag="OQQ72_002883"
     CDS             complement(7882..8526)
                     /gene="cheZ"
                     /locus_tag="OQQ72_002883"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HCS2012539.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF"
     gene            complement(8537..8926)
                     /gene="cheY"
                     /locus_tag="OQQ72_002884"
     CDS             complement(8537..8926)
                     /gene="cheY"
                     /locus_tag="OQQ72_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HCS2012540.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(8941..9879)
                     /locus_tag="OQQ72_002885"
     CDS             complement(8941..9879)
                     /locus_tag="OQQ72_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HCS2012541.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPVGMLAMRQAGAWTLAQNEASCVVFG
                     MPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI"
     gene            complement(9882..10694)
                     /gene="cheR"
                     /locus_tag="OQQ72_002886"
     CDS             complement(9882..10694)
                     /gene="cheR"
                     /locus_tag="OQQ72_002886"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005063150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HCS2012542.1"
                     /translation="MRLPGCSRYSFRRISQLIYQRAGIVLADHKRDMVYNRLVRRLRS
                     LGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHHFPLLADHARRRSGEYR
                     VWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRHEELKNL
                     TPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMI
                     YFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLRGQTVYALSKD"
     gene            complement(10833..11399)
                     /gene="flhC"
                     /locus_tag="OQQ72_002887"
     CDS             complement(10833..11399)
                     /gene="flhC"
                     /locus_tag="OQQ72_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhC"
                     /protein_id="HCS2012543.1"
                     /translation="MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELR
                     GSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQC
                     PQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
                     RAVKRRKLSQNPADIIPQLLDEQRVQAV"
     gene            complement(11402..11752)
                     /gene="flhD"
                     /locus_tag="OQQ72_002888"
     CDS             complement(11402..11752)
                     /gene="flhD"
                     /locus_tag="OQQ72_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar transcriptional regulator FlhD"
                     /protein_id="HCS2012544.1"
                     /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAT
                     TLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLN
                     DVNQPEEALRKKRA"
     gene            12531..12959
                     /gene="uspC"
                     /locus_tag="OQQ72_002889"
     CDS             12531..12959
                     /gene="uspC"
                     /locus_tag="OQQ72_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspC"
                     /protein_id="HCS2012545.1"
                     /translation="MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPE
                     MYNQLAAPMLEDLRSVMQEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHH
                     FDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD"
     gene            complement(12966..>13509)
                     /locus_tag="OQQ72_002890"
     CDS             complement(12966..>13509)
                     /locus_tag="OQQ72_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HCS2012546.1"
                     /translation="QIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQ
                     HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT
                     SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI
                     VPRSAESQQRDKVATFPKLA"
BASE COUNT         3445 a         3601 c         3200 g         3263 t
ORIGIN      
        1 gaatatataa aatattttta gcacaacgct atgttcactg tcacccgctc aacagatcac
       61 ggttatcgta cgttttttat actgctcagg gataaaaaaa ggcccctgtc gaaattgcag
      121 gggcctggta cgagcaagca tcatattggg cgacatgatg caacggtaaa aatcatttgg
      181 cctgatggcg ttcaatgatt cctttcattt cagcaaccgc cgccccgtct acgacataac
      241 gcgaatactc gtccgcgtgt gcatctgatg acatggacaa tccttgatta cgataacgca
      301 tcggtgaagc ttgccacgct cccgcggagc tatggacttc cagcactccg gcatcgagga
      361 agtggtgcag gttttctgca cggactcctg ctccggccat aatgattgga gcatcacgat
      421 gggcaataag ttccataatt tttgataaac cttgcagtgc atctgatttt tgccctgatg
      481 tcagcacccg ggcgatgccc aattccgcaa gattactgag tgtatttaaa gggttagcgc
      541 acatatcgaa ggcgcgatga aaagtcactg ccagcggacc ggcagcagcc attatttttt
      601 ccattcgtgg catatcgaca ttcccgtcaa catcgagcac gcccgtcacc agtccaggaa
      661 aacctaattc gcggactgtg cgcacatcct caagaatggc ggcaaactca ccgtcgctgt
      721 agcaaaaatc accaccgcgt gggcggataa tcggatgcac agggatcgtc acccactggc
      781 gcacggattt cagtacaccc aacgacggcg ttaagccccc ctcttttggg gctgcgcata
      841 attcaactct gtctgcgccg ttttgctgcg ccgttagtgc acattccatg ctgtaacagc
      901 aaatttccag taatgccatt tttactcctt aattacgccg actgctcgct ggcaacgatc
      961 tcttcaatgg accacggatg aaacttaata gttgttttgc catcggtgac cgccagcgtc
     1021 ggattcggta atcgctcata ctcacctttt ggcgaactgg ttttcactga gatccccggt
     1081 aggctgagtc cttcatcaga aagcaatgcc agcgcacggg cattcagcgt ttctggatca
     1141 cccggcagaa cgatttcaat atgttcccaa ccttcgtgtg ggtaacgttt ttccccgggc
     1201 cacggtagct ccacaatgga aaactgccag tgcgcaacct gtaccggttc atgcaattta
     1261 aacagacaaa tcggtctgcc attgatcata ttttctgaca aaagctcgcc acactgttca
     1321 aaaccgcgac gccagcgctc agcggtgacg ttttgatggc aacgcaaaga aatgtgatcg
     1381 gcagtcagcg gagtgatatc caaccccaga cggcgggaga gttcatctaa tgcgtgggta
     1441 aatcgcggta aatccgatgc aatatcctgc agctcgtcga tagattgcca gttcgccata
     1501 atcactcttc gtctttcagt aaaagcgtta atttaccctg ttgccctgcg ccaaccaacc
     1561 gctgatttca cgccgcttct gatgcaatag tgaaaacggc aatacgccac gcgcacgttg
     1621 ctgacgaaaa cagccatttg cagtatactc ccgccctaat ttctttaact ggtgcgggca
     1681 atttttgctc gcttcatcaa tgtaaggtat tccggtgaat attcaggctc ttctctcaga
     1741 aaaagtccgt caggccatga ttgcggcagg cgcgcctgcg gattgcgaac cgcaggttcg
     1801 tcagtcagca aaagttcagt tcggcgacta tcaggctaac ggcatgatgg cagttgctaa
     1861 aaaactgggt atggcaccgc gacaattagc agagcaggtg ctgactcatc tggatcttaa
     1921 cggtatcgcc agcaaagttg agatcgccgg tccaggcttt atcaacattt tccttgatcc
     1981 ggcattcctg gctgaacatg ttcagcaggc gctggcgtcc gatcgtctcg gtgtttctac
     2041 gccagaaaaa cagaccattg tggttgacta ctctgcgcca aacgtggcga aagagatgca
     2101 tgtcggtcac ctgcgctcta ccattattgg tgacgcagca gtgcgtactc tggagttcct
     2161 cggtcacaaa gtgattcgcg caaaccacgt cggcgactgg ggcactcagt tcggtatgct
     2221 gattgcatgg ctggaaaagc agcagcagga aaacgccggt gaaatggagc tggctgacct
     2281 tgaaggtttc taccgcgatg cgaaaaagca ttacgacgaa gatgaagagt ttgccgagcg
     2341 tgcacgtaac tacgtggtaa aactgcaaag cggtgacgaa tatttccgcg agatgtggca
     2401 caaactggtc gacatcacca tgacgcagaa ccagatcacc tacgatcgtc tcaacgtgac
     2461 gctgacccgt gatgacgtga tgggcgaaag cctctacaac ccaatgctgc caggaattgt
     2521 ggcggatctc aaagccaaag gtctggcagt agaaagcgaa ggggcgaccg tcgtattcct
     2581 tgatgagttt aaaaacaagg aaggcgaacc gatgggcgtg atcattcaga agaaagatgg
     2641 cggctatctc tacaccacca ctgatatcgc ctgtgcgaaa tatcgttatg aaacactgca
     2701 tgccgatcgc gtgctgtatt acatcgactc ccgtcagcat caacacctga tgcaggcatg
     2761 ggcgatcgtc cgtaaagcag gctatgtacc ggaatccgta ccgctggaac accacatgtt
     2821 cggcatgatg ctgggtaaag acggcaaacc gttcaaaacc cgcgcgggtg gtacagtgaa
     2881 actggccgat ctgctggatg aagccttgga acgtgcacgc cgtctggtgg cagaaaagaa
     2941 cccggatatg ccagctgacg agctggaaaa actggctaac gcggttggta ttggagcggt
     3001 gaaatatgcg gatctctcca aaaaccgcac cacggactac atcttcgact gggacaacat
     3061 gctggcgttt gagggtaata ccgcgccata catgcagtat gcttacacgc gtgtattgtc
     3121 cgtgttccgt aaggcagaaa ttaacgaaga gcaactggct gcagctccgg taatcatccg
     3181 tgaagatcgt gaagcgcaac tggcagctcg cctgctgcag tttgaagaaa ccctcaccgt
     3241 ggttgcccgt gaaggcacgc cgcatgtgat gtgtgcttac ctgtacgatc tggctggtct
     3301 gttctctggc ttctacgagc actgcccgat cctcagcgca gaaaacgaag aagtgcgtaa
     3361 cagccgtctg aaactggcac aactgacagc gaagacgcta aagctgggtc tggatacgct
     3421 gggtattgag acagtagagc gtatgtaatc gatttttcgt gagagtaaag cctgatcagg
     3481 gttacctgat caggcttttt tattgccatc taaatgtatt ctgaaaatgg acatgccatt
     3541 gttttctgac tgttggataa gaggccagaa gcgtaatatc cggccccagg gaaacgataa
     3601 cggttgaatt taaggaatac cgcagtgttt aaatttcttg tattaacatt aggcattatc
     3661 tcttgccagg cttacgcaga agatacggtt atagtaaacg accatgacat ttcagccatc
     3721 aaagattgtt ggcaaaaaaa ttcagatgat gatactgaca ttaacgtgat caaatcatgc
     3781 ctgcgacaag aatacaatct cgtcgatgcg caattaaata aagcctatgg tgaagcttat
     3841 cgttatatag aacaagtgcc acgcacaggt gtaaaaaaac ctgatatcga acaacttaac
     3901 ttgcttaaaa aatcacagcg agcctggctg gattttaggg acaaagaatg tgaattaatc
     3961 ctttcaaatg aggacgttca ggatttaagt gacccttatt ctgaatcaga atggctctca
     4021 tgtatgatca tacagaccaa tacgcgaact cgccagttgc agctataccg taactctgaa
     4081 gatttttatc caagcccttt gacaagagga taattcacat ctttttggca tgttttgttg
     4141 caagctattc ctgataaata attgcaacaa gacatcgagc ctttttcact gagttattaa
     4201 acatactcgc gagcgcgtaa tttttttgtc cttcagcgat aattcacaat cacttcatta
     4261 cgttgtacct ttagcggtgg aattaaccgc ccaccgcctg gcacttccca gataaatcgc
     4321 aacggttctg ctgccgctat accggaaaag gccacggtgg ttccgctctg cccctctaat
     4381 tcgacacaac gagattgcga acacaagcga acccgcagtc ctgaaggtgt cgggccgata
     4441 agctgataac gccacgctac cagcgtcatc aatcctgaag caggttgtcg cgtagaaaga
     4501 ggcgcagacg acatcgactc accgcgatga tttagcgtaa ttcctacact acttgcctgc
     4561 cacatcccct ccccggcggc ttgcaccagc agcggaaaca ataatattgc taataaggtt
     4621 ctcattattt gccgccaatt gtcgccgtca tgcggatatg tcggttatca gacagttcca
     4681 gattcgacag gaccactaac tgcggcaagc tgcggcgcag gaagcgagac aataatggtc
     4741 gcagcgcgtg gttcaccaac aatactggcg gcgcacccag catctcctga cgggatagcg
     4801 cttcctgagt ttgcgccagt aaacgatccg ccagccctgg ctccagtcct cccccgccct
     4861 gcagcgcctg tagtaacaaa cgttccagcg gtgtatcgag gccaataaca tggacttcat
     4921 ctttgccagg aaaccactgc tgggtaatcg cccgtcccaa cgccacgcgc acgacggcgg
     4981 ttaattcatg tggatcgctt tggatgggcg catgttccgc cagcgtttcg agaatggtgc
     5041 gcatatcgcg aatcggtact ttttcatcga ggagattttg cagcacttta tgcagtgtgg
     5101 tgagcgtgac gacgccagga acgagatctt ccgtcagctt tggcatctcc tgggcgacgc
     5161 gatccaacag ctgttgcgcc tcctgacgac caaacagctc tgcggcatgc tggctaatga
     5221 ggtggttaag atgcgttgct accaccgtgc tggcctcaac cactgtgtac ccctgaatct
     5281 gcgcctgttc ttttagcgca ctttcaatcc agatagcatt caggccaaat gccggatcga
     5341 cggtcgcctc accaggtaac gtcccggcag cggttccagg gttaatcgcc aaccagcgcc
     5401 ccggataagc atcaccactg ccaatctcca cgcctttcat caaaatgcga tagcgggcag
     5461 gttgcagatc catattgtcg cgaatgtgca ccactggcgg cagaaatccc atctcctggg
     5521 caaatttctt gcggatactg cgtatacggc ccaacaactc accatcctgc tggaaatcga
     5581 ccatcgggat cagtcgataa cccacttcca ttcccagaga atcttccagt tgtacatcgt
     5641 tccacgtcgc ttcgacaacg gtattattct ctgccatttt taccggtttg ggttcggcag
     5701 gcgctttttg ttcgcatccg cgtatccacc aggccagccc cagcaatccg gcagtgaaca
     5761 gcaaaaatac caggttcggc attccaggca ccaagccgag taaaccgagc acggcggcgc
     5821 ttaacaacat aacgcttggg ttactgaaaa gctgattcac catctgctcg ccaacatcct
     5881 gatcggtgct gacacgcgta acgatgaccc ccgcggcggt agaaatcacc agcgccggaa
     5941 tttgtgccac cagaccgtcg ccaatggtca atagcgtata actttccgcc gcgtgtccca
     6001 tgctcatgcc atgttgcagc acgccgacca gcaacccgcc gacaacgtta atgaccatga
     6061 tgaggatccc ggcgatggca tcgccgcgaa caaacttact tgccccgtcc attgagccgt
     6121 aaaaatcggc ttcctgagtc acttcggagc ggcgtttttt cgcctcatct tcaccaatca
     6181 atccagcgtt aaggtcggcg tcaatcgcca tctgcttacc cggcatacca tcgagaacaa
     6241 agcgcgcacc cacttctgcg atacgcccgg cacctttggt aatgaccata aagttgatga
     6301 tcacgagaat gacaaacacc acgataccta tagcgaaatt gccaccaacg aggaagtgac
     6361 cgaacgcttc gaccaccttc cctgccgccg ccgcgccggt atgcccttcc atcaaaatga
     6421 tacgggttga agccacgtta agtgccagac gcaacaacgt agtaaacaac agaatggtcg
     6481 gaaacgcagc aaactcaagc gtgcgctggg taaacatcgc caccagcaac accatgatcg
     6541 acaaggcaat attgaaggta aacaacaggt cgagtatgaa tgcgggcagt ggcagcacca
     6601 tcatcgacaa gatcaacagg atcaaaatcg gtccggcaag gatctgccat tgtgtcgatt
     6661 tcaggtttgc gggcaggcgc agcatcgcgg ccagattact catgggtcgg tttctcgtta
     6721 ataaaatcca gggcttccgg caccggaaga tgagtaggtt gtacagggcg ctgtccacca
     6781 gccagacgcc agcgtttcag ttgccagatc caggccagca cttccgccac cgcggcgtac
     6841 agttgacccg ggatttgttg accaatctcc gcatgtcgat acagcgctcg cgccagcggc
     6901 ggcgcttcaa gcgtcgggac gttattttca gcgccaattt cacgaatgcg cagcgcgacc
     6961 agccctgcac ctttagcgac cactttcggt gcgctcattt tgttttcgtc atactgcaac
     7021 gctaccgaat agtgggtcgg gttattgaca atgacatccg ctttcggcac atcggccatc
     7081 atccgacgcc gtgcggcagc tcgctgcatc tgacggatcc gtcctttaac atgggggtcg
     7141 ccttcgcttt gtttgaactc atcacgaata tcctgccgcg acattcgcag ctttttcagg
     7201 tggctgaaga tttggaaaaa gacgtcaaat cccaccattg gaatgacacc aagcaccacc
     7261 agcagtgcgc atagccctac caaatccatc gcattaccca tggcggtaat cggagactcg
     7321 gccagtaagc gcatcatctg cggccagtga tgccagagaa aaaaccccgt cacgctgcca
     7381 accaagatgg ttttcaaaat tgctttaagc aactccgcgc cagtctgtgc cgagaacatc
     7441 cgtttaatgc ccggtagcgg gttgagtttg gaaaacttcg gctgcaagga ttttccgcta
     7501 aataccagcc cccccagcat gaccggagaa atgagcgcta ccagcaccac gccgctaatc
     7561 agcggtagca gcgccagcat ggcttctctg atcagcagaa taatctgccc gaggatcaga
     7621 ttcgggtctt tgataatact gtgatcaaaa tgcagcccag cggagagcat gcccgacaat
     7681 cgacgggcca gcgacacacc gccgaaccag ataacacaca cgcccaccag caaaatcagc
     7741 agtgaggtca gttcacggga acgcgggatt tagggctttt gctgccacac atcaagcata
     7801 gtgtgcgttt gtcggatgcg gcgtcatcgc cttatcagac cgcctgatat gacgtggtca
     7861 cgccacatca ggcaatacaa atcaaaatcc aagactatcc aacaaatcgt ccacctgatc
     7921 ctgactggct accacaccgg ctttgctggt atcgacctga ggtccattaa gcaaactctg
     7981 gttttcacgt tttggacgcg actcctgttc cgggatgttt tccaacagca ccatcagcaa
     8041 ctggcgttcg atctcctgaa tgacatccat catccgctta ataacctgcc cggtgagatc
     8101 ctgaaaatcc tgcgccatca tgatttccag cagttgcgcg ttagtaaagc tggtatgcgc
     8161 gggtacatct gccagaaatt gtcgtgtatc tgttaccagt tcacgggcgt cggcaaggtc
     8221 aatcggatcg gcaaaccagt catcccaacg ttgggttaac gcttttgctg atttctccat
     8281 ttgatcctga tgcggttgtg acgcctcaac actgttcagc gcccgctccg cagcctgggc
     8341 ggtcatctgc acaacatagt acaaacgatc gcgcgcatcg gggatggctt ccgccgcttc
     8401 ggcaatggcc tgatccagcc ccagttcccg caaactgtcg cgcagcatac gcgtcaggct
     8461 gccgatgcgc gcaatgatat cgccagctga atgctcgtca gcaggtttga ttgatggttg
     8521 catcatagtc gcatcctcac atgtccagtt tatcaaagat tttgttgagt ttttcctcca
     8581 gcgtcgcggc ggtaaatggc ttcaccacat agccactggc ccccgcttgc gccgcagcaa
     8641 tgatgttctc tttcttcgct tctgcagtca ccattaacac tggcaatgcc gacatcgcgc
     8701 catccgcacg aattgttttc agcaattcca ggccatccat attgggcatg ttccagtcgg
     8761 agataacaaa tccataaccg cctgcctgca acttattgag agcgtcgacg ccatcttccg
     8821 cttcctcaac attattgaat cccagctctt tcagcaggtt acgcactatg cgtcgcatgg
     8881 tggaaaagtc atccacaacc aaaaatttaa gttctttatc cgccatttca cactcctgat
     8941 ttaaatacgt atcgcctgtc cggcactaat ttttgccaac atttgctggc ttacctggct
     9001 aagatcgacc acttcgcaga caccacccat attgatggcc tcgcgcggca tgccgaacac
     9061 cacgcaactt gcttcgtttt gcgcaagggt ccatgccccc gcctgacgca tcgccaacat
     9121 tcccaccggg ccgtcgtgaa ttttgatttg ataatttgcg ccactacgcg ccagttccat
     9181 atgccgatcg cccggcgcaa tataggcatg ccccggcaag acacgttctc cgtcttcggc
     9241 ttctttaacc ccgatctggc aaagcttatt aagtctgtcg gcaaaagagc gggtgaaacc
     9301 gggcggcata tgttgggtaa ttaacaatgc cgggctggaa agcggcaacg gttgcagtac
     9361 gtgacgaatt gcctcagttc cacccgttga agcaccaatc gcaatcagtt tttcagaact
     9421 caacaacgga cccgccttca gcgttgtcgg tgctgacaat ggcttatgtg ctgcaaggct
     9481 cgcctttgct gccgtacgca ccttttcagc aatcatttcg ctatacgcca gcattccttc
     9541 gcgaataccc agttgcggtt tggtgacaaa atctattgcc cccagctcca gcgcgcgcag
     9601 cgtgacttct gatcctttgc cggtcaagga agaaaccatc acaacgggca ttggacgcaa
     9661 acgcattaat ttttcgagga aatccagtcc gtccatccgc ggcatttcaa catccagcgt
     9721 cagcacatcg ggattgaatt tcttaatcaa gtcacgcgcg accagcggat caggcgcggt
     9781 cgccaccatt tccatgtcgc tatggctgtt gatgatttct gtcatgatct ggcgcatcag
     9841 tgccgaatca tcgacagata acaccctgat tttgctcatc gttaatcctt acttagcgca
     9901 tacaccgtct gaccacgcag cgtgaagcgg cgctcaaggt ggctaaagtt ttcagagtga
     9961 cccgcaaaca gcaatccgtc gggtttaagg agcggaacaa agcggcgcaa aatctcctgc
    10021 tgggtatttt gatcgaagta gatcatgacg ttacgacaga agatcgcatc aaacggcccc
    10081 ggcacggtgt actgtttcgc cagtagattc agcggggcaa aatcaacata gttcgccagc
    10141 tcctgacgca cgcgtaccag cccttcatgc ggtcccgtcc ctcgcatgaa ataccgttgc
    10201 agttgctgcg gcgtcaggtt tttcaactct tcatggcgat aaataccgct tctggctttt
    10261 tccagcactt cggtgtcgat atcactggca aacactttcc agcgtccggg cgcggtgccc
    10321 aatgtgtcag ccagcgtcat cgcaatgctg tacggctctt cgccggttga agccgccgcg
    10381 ctccatacgc gatactcgcc agaacggcga cgtgcgtgat ccgcgagcag agggaaatga
    10441 tgtgcctcac ggaaaaatgc cgtcagattc gtggtcagcg aattgataaa cgcctgccac
    10501 tcaccgctgt gctgattaga ttccagcaag ttcagataat gaccgaaatc cgtcagtccc
    10561 agcgaacgca aacgacgaac cagtcggttg taaaccatgt cgcgtttatg atcggccagg
    10621 acgatcccgg ctcgttgata gatcaattga cttatccgcc gaaaactgta ccgagaacaa
    10681 ccaggtaacc taataagata agcacgacat catccttcca ctgttgacca tgacaggatg
    10741 ttcagtcgtc aggcgttaac gcgcgattgg ggcaaaaaaa aagcagcggt acgtcgttac
    10801 cgctgctggc atgttgcgcc acaccgtatc agttaaacag cctgtactct ctgttcatcc
    10861 agcagttgtg ggataatatc ggcaggattc tgggaaagtt tacgtctttt tactgcccgg
    10921 gatggcggtt gacataagct gcaggcaaag ctgccaacag gctggtgagc gtgggtaata
    10981 aaattgccgc cgcagcagtt gcagctggaa agttgcagta atccactttc aacaaaccgc
    11041 accaatgtcc aggcacgggt taatgccagc agtggtcctt cttctgcttg tgggcactgt
    11101 tcaaggtata aacggtaggc tttgatcacc gcatcgacgc cattacacaa acctgttttc
    11161 agtaaaaact gccatgcatt acagaacatc gaagcatgaa cgttttgttc ccaggtcata
    11221 aaccagtcgg ttgagaatgg cagcatgcct ttcggcggtg ggcttccgcg cagttcttta
    11281 taaagtttta tcaggcgtcc gcgacttaac tgtgtttcgc tttccagcat ctgcaaacga
    11341 gcgcccaggg tgatcaattc aatatcccgc gcttcctgaa caatgctttt ttcactcatg
    11401 atcaggccct tttcttgcgc agcgcttctt caggctgatt aacatcattc agcaagcgtg
    11461 ttgagagcat gatgccggta tgaatttgct ggagatcgtt aacgcgggaa tcttgcgtca
    11521 actgagtaat cgtctggtgg ctgtcaaaac ggaagtgaca aaccagttga ttggtttctg
    11581 ccagcttaac catttgcgga agagtcagtg ccgctaacgt tgtcgccatt tcttcattta
    11641 tgccgagacg aaacatagcg gacgctttgt cctgaacaat caaacgctgt gcaagtagta
    11701 aatatgacaa gttgatgtca taaatgtgtt tcagcaactc ggaggtatgc attattccca
    11761 cccagaataa ccaactttat ttttatgcgg tttcaccgca ccccgtgatg tcgccgggaa
    11821 gccccggtaa aaaataatta gcattagaat agtgcgataa gctgcaataa gcagaaccac
    11881 ctttttggtt taatatgtcc ttacaaatag aaatgggtct ttacacttat ctaagatttt
    11941 tcctaaatcg acgcaactgt actcgtcact acacgcacat acaacggagg ggggctgcga
    12001 ttttcaataa tgtgtgatgc agatcacaca aaacactcaa ttacttaaca taaatgtata
    12061 agccatactt ttgttttggg tgtatttcaa tctgttaaaa agtttttcgc tacgctagca
    12121 agcaaaaatg aaactggaat aatcgaaatg ggatgttgcg cacagttaaa ataactcacc
    12181 gtaaataatc atctgctata aataatcact ttcatgcaat accagataag ctatttttaa
    12241 acagacactt accgcacaac aaactaatta aatacaaaga aaggcaacaa tcaacttaat
    12301 gttaatcaaa tgttttacat atattaacca cttgtttaat gcggagaatc agtacactat
    12361 tttcttataa ttacatttga aattatatga tcaccgggag tgattgatta attgtcttta
    12421 ctaataatca gactaatatt tacctgtttg accgagttgg gattgcgtcg tttctccatt
    12481 aggagtaaag ctttaatgtc acctgaagtt cacagaataa ggaacaggtt atgagctata
    12541 gcaatattct tgtcgctgtt gcggttacac cggaaagtca gcaactgctg gcaaaagcgg
    12601 tatctatcgc caggccagta aagggacaca tcagtttaat tactctcgct tccgacccgg
    12661 aaatgtacaa tcaattagcc gcgccgatgc ttgaagattt acgcagcgtg atgcaagaag
    12721 aaacgcaaag ctttcttgat aagttaattc aggatgcggg gtatcccgtt gacaagacgt
    12781 ttattgccta cggtgagtta agcgaacata ttctggaagt atgtcacaaa catcatttcg
    12841 atttggtgat ttgcggtaat cacaatcaca gtttcttttc gcgagcatcc tgctcggcga
    12901 aaagagtgat tgcctcaagt gaggtcgatg tgctgttagt tccacttacg ggtgattaac
    12961 cgctcctacg caagctttgg aaaggtagca actttatcgc gctgctggct ttccgcgctt
    13021 cgcggaacta tctgctttag gtcgctaatg aagcactcct gccagtggtt aatatcgttt
    13081 ttcacgataa cgtccagcat ttctgcatga cgggaaatac gttccgccag cgacatagtc
    13141 aatgcacgat ccagcgcagc tgcaacttcg tcacgatcgt aggggttaac aattaacgcc
    13201 gacgttaact cgtttgccgc tcccgcaaat tgcgaaagaa caagaacgcc cgggttggct
    13261 gggtcctgag cagcaacata ctcttttgct accaggttca tcccgtcacg cagtggcgtc
    13321 actaagccca cgtcagagta gcggaatatt ttcatcagta atttacggtc aaaatgctga
    13381 ttcaaataat aaagcggcgt ccagcctaat tgcccgtatt taccattaat tcgtccagct
    13441 tcattttcga gctgatgacg aatatcctga taggcttgca catcaccacg cgacgttggt
    13501 gcaatctgg
//
LOCUS       DAJVUY010000110        13480 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.110, whole genome shotgun sequence.
ACCESSION   DAJVUY010000110 DAJVUY010000000
VERSION     DAJVUY010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13480
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.110"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ72_002891"
     CDS             complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ72_002891"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HCS2012547.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ72_002892"
     CDS             complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ72_002892"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HCS2012548.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ72_002893"
     CDS             complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="OQQ72_002893"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HCS2012549.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ72_002894"
     CDS             complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="OQQ72_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HCS2012550.1"
                     /translation="MHLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMSGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIAWLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ72_002895"
                     /gene_synonym="lytB"
     CDS             complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="OQQ72_002895"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HCS2012551.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ72_002896"
     CDS             complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="OQQ72_002896"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS2012552.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ72_002897"
     CDS             complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="OQQ72_002897"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HCS2012553.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ72_002898"
     CDS             complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="OQQ72_002898"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HCS2012554.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHFSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ72_002899"
     CDS             complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="OQQ72_002899"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HCS2012555.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYVVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12685..12903)
                     /locus_tag="OQQ72_002900"
     CDS             complement(12685..12903)
                     /locus_tag="OQQ72_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 family protein"
                     /protein_id="HCS2012556.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ72_002901"
     CDS             13006..13269
                     /gene="rpsT"
                     /locus_tag="OQQ72_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCS2012557.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3147 a         3807 c         3400 g         3126 t
ORIGIN      
        1 caaaagattt acttaatggg caaaaaaaac ggtcctcatc agagaaccgt attacttatt
       61 cgatcaaatt agcggatgaa aaatatccgc catgacacgc tattatttga tctgcgcgtg
      121 catttcctgc accgaaatta ctttttcggt cgcgtcggca ttcagcgcca tcgcggtagc
      181 gaaaccaccg ttcagggtgg tgtcataatg cactttatat tgcagcgcac tgcgacggat
      241 cacgcgggag tcttcaatcg cgcgacggcc tgaagtggtg ttgatgatgt aggtatattc
      301 gccattcttg atgcggtcct gaatgtgcgg acggccttca tgcaccttgt tcaccagacg
      361 cggattaatg cccgcttcgc ccagcacaat cgccgtgccg tgggtcgcat ccagctcgaa
      421 gccctgtttc agcagttttg ccgccaggtc caccacgcgt tctttatcgc cttcgcgcac
      481 ggaaagcaac gcacgaccgt gtttcttcat ggtggagttg ctgcccagct gcgctttggc
      541 aaacgcttca gcgaaggtgc ggcccacgcc catcacttcc ccggtggagc gcatttctgg
      601 ccctaacagc gggtcaacac ccgggaattt attgaacggc agcaccactt ctttcaccga
      661 gtagtacggc gggataactt ctttggttac gccctgctca gccagcgatt tgccagccat
      721 cacacgcgcc gccacttttg ccagcggtac gccggtggct ttggagacga acggaacggt
      781 acgcgccgca cgcgggttaa cttcaatcag gtagacttcg ttgtttttca ccgcaaactg
      841 cacgttcatc agaccgcgca cctgcaattc gaaggccagt ttctgcacct gctggcgcat
      901 cacatcctga atttcctgac ttaaggtgta ggctggcaga gaacatgcgg agtcaccgga
      961 gtgcacgccc gcctgctcga tgtgctccat gatgccgcca atcagcacca tttcgccgtc
     1021 gcagatggca tccacgtcaa cttctaccgc gtcatcaagg aagtgatcca gcaacactgg
     1081 cgcatcgtta gacacgctga ccgccgtctg gaagtagcga cgcaggtcag cttcgtcata
     1141 gacgatttcc atcgcccgac cgccgagaac gtaagacgga cgtaccacca gcgggtagcc
     1201 aatctctttc gccttctcta ccgccatttc aatagcggta acggtggcgt tcgccggttg
     1261 tttcagtttc agacgctcaa ccgcatgctg gaagcgttca cggtcttctg cacggtcgat
     1321 agcatccggg ctggtgccga taaccggtac gccagcagct tccagcgcgc gcgccagttt
     1381 cagcggggtc tgaccgccgt actgaacgat aacgcctttc ggcttctcaa tacgcacgat
     1441 ttccagcaca tcttccagag ttaccggctc gaagtagagg cgatcggaag tgtcgtagtc
     1501 ggtggagacg gtttccgggt tacagttaac cataatggtt tcgtaaccgt cttcgcgcag
     1561 cgccagcgag gcgtgtacac agcagtagtc gaattcgata ccctgaccga tacggttcgg
     1621 gccgccgccg agaaccatga ttttttcacg gtcggtagac ggattcgctt cgcactcttc
     1681 ttcataagtg gagtacatgt aagcggtgtc ggtggcgaac tctgccgcac aggtatccac
     1741 gcgcttataa accgggtgca ggtcatactg gtcgcgcagc ttgcggattt ccgcttcgcg
     1801 cacgcccgcc agttttgcca gacgcgcatc ggcaaagcct ttgcgtttca gctggcgcag
     1861 gaattcagcg ttcaggccag tgatgcccac ttccgctact ttctcttcca gacgcaccag
     1921 ttcttcaatc tgtaccagga accagcggtc aatattggtc aggttgaaca cgccgtccac
     1981 agacaggccc gcacggaagg catcggcgat gtaccagata cgctctgcgc cagcatcttt
     2041 cagttcgcga cggattttgg ttaacgcttc cgggtcatcg aggctcactt tcgggtcgaa
     2101 tccagtcgca ccgacttcca ggccgcgcag cgctttttgc agggattcct gctgcgtgcg
     2161 accaatcgcc atcacttcgc caaccgattt catctgagtg gtcagacggt cgttagcacc
     2221 agcgaatttt tcgaagttga agcgaggaat tttagtaacc acatagtcga tggacggctc
     2281 gaaggaggcc ggagtacgtc cgccagtgat gtcgttcatc agttcgtcga gggtgtaacc
     2341 caccgccagt ttcgccgcca ctttagcaat cgggaaaccg gtcgctttcg acgccagcgc
     2401 cgaagaacgg gacacgcgtg ggttcatttc gataacaatc aggcgaccgt ttttcgggtt
     2461 caccgcaaac tggacattgg aaccaccggt ttcaacgccg atttcacgca gcaccgccat
     2521 cgaggcgtta cgcatgattt gatattcttt gtcggtcagc gtttgggctg gcgcgacagt
     2581 gatggagtca ccggtatgga tgcccatcgc atcaaagttt tcgatagagc agacgatgat
     2641 gcagttgtcg tttttatcac gcaccacttc catctcgtac tctttccagc cgatcagcga
     2701 ctcatcaatc agcagctctt tggttgggga gagatccaga ccgcgggcgc aaatttcttc
     2761 aaactcttcg cggttataag cgataccgcc gccgctaccg cccatggtaa aggatgggcg
     2821 aataatgcac gggaagccca cgtcagcggc aaccgccagc gcttcttcca tcgtgtgtgc
     2881 gataccggaa cgcgcggttt ccagaccaat tttcttcatc gctacgtcga aacgacggcg
     2941 gtcttctgct ttatcaatcg catcggcggt cgcaccaatc atagtcacgc cgaactcttc
     3001 caacacgccc tgacgctcca gctccagagc gcagttcagc gccgtctgac cgcccatcgt
     3061 tggcagcacc gcgtccgggc gctctttttc aataatcttg cgtactactt cccagtgaat
     3121 cggctcgatg taggtcgcat cggccatttc cgggtcggtc atgatggtcg ccgggttgga
     3181 gttcaccaga atgacgcggt aaccctcttc gcgcagggct ttacatgctt gcgcgccaga
     3241 gtagtcaaac tcacacgcct gaccgataac aatcgggccc gcacccagaa tcaggatact
     3301 ttttatatct gtacgttttg gcatggctct tttactcctg attacttagc ggttttacgg
     3361 tactgctcaa ttaactcgat aaagtggtcg aacaacggcg ctgcgtcgtg tggcccaggg
     3421 ctggcttccg ggtgaccctg gaagctgaac gccggtttat cagtgcgatg aatgccctgt
     3481 aacgtaccgt cgaacaggga tttatgcgtg acacgcaggt ttgcaggtaa tgttgcttca
     3541 tccaccgcaa aaccgtggtt ctgggcggtg atcatcacca cgtttttctc cacatcttta
     3601 accggatggt tgccgccgtg gtgaccaaat ttcattttga cagtcttcgc accgctcgcc
     3661 agcgccagca gctgatgacc gaggcagatg ccgaataccg gaatatcggt ttcgaggaat
     3721 ttctggatgg cggtaatggc gtaatcgcac ggggccgggt cgccaggacc gttggagagg
     3781 aagatgccgt ctggattcat tttcagcaca tcttccgcag aagtttgcgc cggaacgatg
     3841 gtcaggcgac agcctctatc caccagcatc cgcaggatgt tgcgcttggc accaaaatca
     3901 taagccacga cgtggaacgg cagctcgtct tcttttttcg cttctggcag gccgccggtc
     3961 aacgtccagc tcccttgtgt ccagctatag gcttctgcgg tggtcacttc ttttgccaga
     4021 tccatgccat tcagacctgg gaacgcgcgg gctttttcta acgccaacgc cgcatccggg
     4081 ttatcgcctg cgataatgca gccattctgt gcgcctttct cgcgcagtaa acgcgtcagc
     4141 ttacgggtat cgatatcggc aatcgccacg atgttatggc gcttcaggta agaagagagg
     4201 tcttcggtat tacggaagtt gctggcaatc agcggcaggt cgcgaatcac cagaccttgt
     4261 gcatgtacct gagaagattc ttcatcggcg tcattagtgc cgacattgcc aatatgggga
     4321 taagtaagag taacgatttg acgagaatag gaaggatcag tgaggatttc ttgataaccg
     4381 gtcattgaag tattgaaaac gacttcccca accgccgaac ctgttgcccc tatggcccga
     4441 ccgtgaaact gggttccgtc ttccagaacc aatagcgctg acttaatcaa aacaccctcc
     4501 agagaatatt cactcacttt atttgcatat taattcacaa tgatgacgta aatcaatgca
     4561 aatctgctta ccgacgaatt tctggcaaac ggcggcattc tggagatatg ggcgctaaaa
     4621 gtcaacttaa tggcgggatt ttttatatta ttttgtggct catgcatgtt ttacaggcat
     4681 taagcgacaa aaagatcata taacctgttc tggaaaacgc ttgcacagca agaagattgc
     4741 atgaaataaa agggagcagg gaaaagtgga ccaaatggtc aaattttaca ttaaaacaac
     4801 aaaaacagaa gacaaaacat gtaatttttg gcacttatag acaatttaaa aacataacac
     4861 taaaaataaa agggccaaaa ttaaagccct ttataatcaa taaattaaat gtgttatttt
     4921 tgcaccataa caaatatttt gtggttacaa actattgaga tcaagcacat ctcgcatatc
     4981 aaaaagacca ctttccttac cactcaacca caaagccgat cttaccgcgc cgttagcaaa
     5041 tgtcatgcgg ctggacgcct tatgggtgat ctccagacgc tcgccaatat cggcaaacat
     5101 cgcggtatgt tcgccaacga tgtcacctgc acgcacggtg gcaaaaccaa tggtgccagg
     5161 cacacgttca ccggtgtggc tttcacgact gtagaccgcg caatctttca gatctttatc
     5221 aagggcgtgg gcgatcgcct ctcccattgc cagtgcggtg cctgacggcg catcaacttt
     5281 atgtctatga tgtgcttcaa taatttcgat atcggtgtag tcacccatca ctttggctgc
     5341 tttctccagc agcttaagca tgacgttaac gccaacgcta aaattggcgg caaagacaat
     5401 cgcaatatcg gcggcagcgt cacgaatcgc ctgtttaccg gcttcgtcaa accccgtagt
     5461 gccgatcacc atccctttgc catgctggcg acaaaaagcg agatggttca gcgtaccttc
     5521 cggacgggta aaatcgataa acacatcaaa atcatctttt accgcatcga ggctgctttg
     5581 cacggtaacg cctgttttcc ctgcaccagc cagctcaccg gcgtcgctgc ccagtaaaga
     5641 agatccttcg cgctccagcg ccgcgcccag ctgcacgcct tctaatgcca gcgccgcctg
     5701 aatcaactgg cggcccatac gccccccggc tcccgcgatg gcaacgcgga tgtttgcatc
     5761 atgcatagct attctctttt gttaatttgc atagaccgtt ttcagagtaa ccagcgcatc
     5821 gctacgccgc cagccaaaaa cgctgataat tagaaattaa tgataaacag ggagggatat
     5881 cagtgaaagg catgagtcga tgaatgactg catgccgata acatgtgaca ggttacgacg
     5941 ccagagccag cacctcagcc acccactgct ggaagccttt cacatccaga tccaatgcca
     6001 cctttacatt ggctggtttg cccaggcaac cgtcgatatc aaccaccgtc gtgcctgagg
     6061 taaattcgcc ctgagtttcc actgccacaa aacacggttt gagagtgaac aattccgggc
     6121 gcaccagcca ggcaatagcg caaagatcgt gcatacgcag tccactttgc atactgccgc
     6181 tacggtagtg gctaaacagg gcgtggagca tttttccggt gcgattcaac tccggcaaag
     6241 tagcgagata gtcaggggtt aatattgcct gattggtgac atccagaccg ctcatgacga
     6301 tttcgatgcc gctacggaag acacaggcag ccgcttctgg atcggcagcg atattaaact
     6361 cggcgtttgg tgtgcagttg ccgcgaccag cagaaccgcc catgatcacc agacgacgaa
     6421 tatacggttt acattccggg cattgtgaaa gtaacagcgc aatattggtt aacgggccga
     6481 tggccaccag ggtaacgggc tctggtgcac gcatcagggc atcccgaatc gccagaaacg
     6541 ctggtatccc gagcggcttt cggttgtgct caacaaagtc gtagccagcc attcccgatt
     6601 cgccgtgcac agatgccgca tcacgcggtg cgcgtaccag cggcacagcg gctccctggg
     6661 cgagcggaat ctccgcattc cagaaatgca gcagttgcag ggcgttgcgg gtggttttct
     6721 caaccgagac attacccgcg acggtggtca tcagttgcag gtcgagttcg ggtgcaaaaa
     6781 tcgcggcggc aatggcgacg gcatcgtcaa tgccggggtc agtatcgagg aagataggta
     6841 aatgcatgtt ttctccataa aaaatgccgg taacaagacc ggcattttcg cataacttag
     6901 gctgctaatg acttaatcga cttcacgaat atcgacacgc agctctttcg gcacttcgaa
     6961 aacaatgttt tcttcacggc cttccagcgg aatggcttca ccaccgccca gctgctgcaa
     7021 acgtgccacc acattctgca ccagaatatc cggagccgat gcgcccgcag tcacgccgac
     7081 gcatttaacc tctttcaccc actcttcctg gatgtctttc gcatcgtcaa tcaaaaacgc
     7141 gcgtttgccc atacgctggg ccagctccgc cagacggttg gagttggagg agtttttcga
     7201 accgaccacc aacacaactt ccgcctgttc tgccagggcg cgtaccgctt cctgacggtt
     7261 agtcgtggcg tagcagatgt catctttgcg cggaccgaca attttcggga agcgtttacg
     7321 cagcgcgtcg atcacatcag acgtgtcatc caccgacagc gtggtctggg tcataaagga
     7381 gagcttctct tcgtttttga ccgtcagttt ccacacatcg tccggcgatt cgaccagata
     7441 cattccccct tccgggttac tgtactggcc cattgtccct tccacttccg ggtgcccggc
     7501 gtgaccgatg agaatagatt cttcgccacg gcgactggcg cgggcgactt ccatatgcac
     7561 tttggtcacc agcggacagg tcgcgtcaaa taccgtcaaa tcgcgacttt ttgcttcgtt
     7621 acgtaccgcc tgagaaacac cgtgtgcgga gaaaatcagg atcgcgccgt ccggtacttc
     7681 gctaatctgc tcaataaaga tagccccacg ctcacgcaag ctatcgacca catagcggtt
     7741 atgtaccact tcgtgacgga catatatcgg tgcgccgtaa atggccagcg cgttttcaac
     7801 aatgctgata gcgcggtcta ccccggcaca aaaaccacgc gggttggcca acaggatctg
     7861 catgttacgc ctccaatgcc ggatcgattt ccagcacttc aatatcaaaa tgaacggtct
     7921 gcccggccag aggatggttg aaatcaacgg taatggagtc gccgttaatt tcgcggatca
     7981 cgccaggcat ctcactgcca tccattgcgg taaaaagcat gattgcgcca atttctggct
     8041 cgcctgcatc cataaattca cggcgggaga agtactgaat caggtccggt gacggcacgc
     8101 caaacgccgc atctggctcc aacgagaagg tggttttatc gcccactttc agccccaaca
     8161 ggtgttgctc cagcccttca gaaagagaag catcacccag gcggaacagc gccggtttac
     8221 cgttgttgcg ggtagactcg gcggtggtgc catcgtcgag ttttagcgtg aagtgcacca
     8281 ggacggcgct attgctctgt acagattcag acatgcaggt ttgctcttat atttgaggat
     8341 ttttgccgga tgcggcgtaa acgccttatc cggcagggtt tattattgtt ttttcgctct
     8401 agaaggcaaa aaaccttcca gcacaatcag tgccgcaccg acacagatgg cagtatcggc
     8461 aaggttgaag gtggcgaagt gccagtcgcc gacgtagaag tcgatcatat cgacaacgaa
     8521 gccgtgccac aggcggtcga acaggttgcc cagcgcgccg ccaataatca gcgcgtaagc
     8581 gatattgttt agcttctgcg tggccttcga gcgatacatc atcactgcca ggatcacgct
     8641 aataccaatc gcaataccgg caaagaacca acgctgccag ccgccgctat cggcaaggaa
     8701 actaaacgcc gcgccatagt tacgcgcata atgcagatta agcgacggga acagcgggac
     8761 cgtatccccc agagcaaagt tctggaggat caggtatttg ctgcccagat cgataatcag
     8821 cacgactacc accagccaca gccagcgtag ccctgttgaa cagatcgatt gactcatcag
     8881 gcaaacttac gtttttcacc gtcaccggcg acgttgctga cacagcggcc gcagatttct
     8941 gcgtgttccg ccaccttgcc gacatcctgg gtgtagtgcc agcagcgtgg gcacttctca
     9001 ccttcggctt tactcaacgc gactttcagc cctttgagta cttcgctctg ctgagcatca
     9061 gcaggtgcgt cgtgatagtc tgcaacggta gcgccggagg tcaacaggac aaatcgtaat
     9121 tcatcgccca gcgcggtcag tttcgccgcc agttccggtt ctgcatacaa ggttactgcc
     9181 gcttccagcg agccccccac tttcttgtcg gcacgcgctt gctcaatgac tttgttcact
     9241 tcgccacgca ctttcaacag ctcgtcccag aacgcatcgt tcatcgcttc gctgtctgcc
     9301 aggccaaaca ggccttcgta ccactcaccg gtgaagacgt atttttcacg ttcgcccggc
     9361 aggtagcccc acacttcatc agcggtgaag gagaggattg gtgccatcca gcgcaccagc
     9421 gcttctgcga tgtgatacag cgcagtctgg cagctacgac gcgccacact gtccgctttg
     9481 gcggtgtact gacggtcttt gatgatgtcg aggtagaagg aacccatctc aacggagcag
     9541 aagcgcatca gacgctgtac cacttcgtgg aaatcgtatg cttcgtacgc cttgaggatg
     9601 tcttcctgtg ccgctttcgc acaacctacg gcccagcgat ccagtaccac catctcttcc
     9661 ggtttcacca tatcttttgc tggatcaaaa ccgttcaggt ttgccagcag gaagcgcgcg
     9721 gtgttacgga tacgacgata gctatcggca gcacgtttca ggatctcgtc agaaacggcc
     9781 atttcaccgg tgtagtcggt tgatgccacc cacagacgca gaatatccgc gcccagtttg
     9841 ttcatcacat cctgcggcga aacggtattg ccgatggatt tagacatctt gcggccctga
     9901 ccatccacgg taaagccgtg ggtcagtacc tgacgatacg gcgctttgcc tttcatcgcg
     9961 gtggagatca ttagggaaga catgaaccaa ccacggtgct ggtcagaacc ttccagatac
    10021 atgtccgctg cgtgaccggc aaattccgga cgcacgtcaa caacagaaaa gtgggtagat
    10081 ccggagtcaa accatacatc caatgtgtcc ggcactttca cgtactgatc agcttcatcg
    10141 ccgaggatct ctttcgcatc aagatcccac cacgcctgga tgccgtcaac ttcaacgcgt
    10201 tttgccactt cttccattag ttcgagagta cgcggatgca gctcttccgt gtctttgtgc
    10261 acgaacagtg acatcggtac gccccaggtg cgctgacggg agatacacca gtcaggacgg
    10321 ttagcaacca tcgactcgat acgcgcctgg ccccagtccg ggatccactg cacgcctttg
    10381 atctctttca gtgactgcgc acgcagacct ttctgatcca tgctgacgaa ccactgcggc
    10441 gtcgcgcgga agatgatcgg cgttttgtga cgccagcagc acggatagct gtgctgcatt
    10501 ttctcaacgt gcagcagcgc gcctttttcc tgcagcagcg caacgacgat gtcgttcgct
    10561 ttgaagacgt tcacgccatc cagcgtcgga taagtgcccg gcagataagt gccgtccggg
    10621 ccaaccgggt tagcggtttc caggccgtat ttctgaccga tcacatagtc gtccgggccg
    10681 tggccaggcg cggtgtgaac ggcaccggta ccggcatcca gggtaacgtg atcgccgagg
    10741 attgccggaa cgtcgaagcc cataaacgga tgggtaaagc gcagcaactc aagctccgca
    10801 ccttttaccg tgccgagaat ggtgtaatcg gtcacgccga tacgctgcat tacgctttca
    10861 accagatctt tcgccagaat cacggcctga ccgtcgatct gcaccagcgc atagtcgaaa
    10921 tcaggtgcaa tagagattgc gcggttcgca ggcagagtcc acggcgtagt ggtccagatc
    10981 accagcgaga ttgggccgtt aacgttgctt acggcaaatt ttgctttcag tgcatcctga
    11041 tcgaccgcct gaaaagcaac gtcgatggac ggagaagttt tgtcgtaata ctcaacttcc
    11101 gcttccgcca gcgcagaacg gcagtcaacg caccagtgta ccggcttcgc gcctttgtgc
    11161 aggtgaccgt tgccgatgat tttgcccagc gcgcggatga tgttggcttc agttttgaag
    11221 tccatggtca ggtacgggtg cgaccagtcg cccagcacgc ccagacggat aaagtctttg
    11281 cgttgaccgt caacctgggt cgccgcgtat tcgcggcact tggcgcggaa ctcggcggcg
    11341 gtgaatttct cacccggctt accgtattct tgctctactt tcagctcgat cggcagaccg
    11401 tggcagtccc agccaggcac atacggcgag tcataaccgg aaagcccttt ggacttcacg
    11461 ataatgtctt tcagaatctt gttaaccgag tgaccaatat gaatgctgcc attcgcataa
    11521 ggagggccat catgcagaat gaaggttttt ttgccttttt tagccgcacg gatgatgccg
    11581 tacagatcat catcagtcca acgcgccagc attcccggtt cgcgcttggc gagatcgcca
    11641 cgcatcggga accctgtttc cggcaaattc agggttgatt tatagtcact catcagattc
    11701 tcggttccgt gtttcggttt gattacataa caggcttaag ccggttttgt tagcccaaaa
    11761 aattcgcggg cggttaattc atcacgcgca atctgcgctt tcagttcgtc cagcgacgca
    11821 aatcgctgct cattgcgtat ttttttacgc agcactactt gtatatggcg accgtaaagg
    11881 tccattgcaa catctaacaa atgcacttcc agctgctggc gaataccggc aaccgttggg
    11941 cgtgttccga tgtttgccac gccgggtaac ggcttttcac cgaggcccag cacttctacc
    12001 acataaaccc ctttcaccgg ggaaacctga cggcgtagcg gtacattcgc cgtcgggaaa
    12061 cctatagtgc gccctaattc atcaccgtgg actacacgcc cggagatggc aaacgggtgc
    12121 cccagtaaac tttctgccag agccagattg tcatccgcca gcgcctgacg cacagcggtg
    12181 ctgctaatac gcacgccacc ttcgcaaaaa gtttgcgtac tagtgatatc gaagccgtat
    12241 tccatgccag ctttctgtaa taacaagaaa tcgccttcac gaccagcgcc aaagcggaaa
    12301 tcatccccta cggcaagaaa ttttacgcgc aaatgcttca ccagaagatc gctgatgaaa
    12361 ttttgcgcgg ttaacgccgc gaaacgcctg tcgaaacgca cgcacagcac gtaatcaacg
    12421 ccacactctg caaggtaacg cagtttttcc cgcagccggg tcagtcttgc cggggcttta
    12481 tcggtagcaa acagttccag tggttgaggt tcaaaaagca tcaccatcac cggtaagttg
    12541 cgcttgcgcc cttcttcctg caagccctgt aacagcgcgc gatgaccgcg atgcacgccg
    12601 tcgaaattac caatagtcag cacacaccct tcttgcgggg cctggctgag attatgtatg
    12661 ccgcgtatca gcttcatgtc tggctcaaaa cagtgaaaat cgtccgagta taccttgtac
    12721 agcggtcaag gttaaccggc gattgagtac cgaaatcaga aagaagtggc ttttcattgc
    12781 catggcgcaa atcacgggaa gaaagtgacc gcctgctgca atttttatcg cggaaaagct
    12841 gtattcacac cccgcaagct ggtagaatcc tgcgccatca ctacgtaacg agtgccggca
    12901 cattaacggc gcttatttgc acaaatccat tgacaaaaga aggctaaaag ggcatattcc
    12961 tcggcctttg aattgtccat atagaacaca tttgggagtt ggaccttggc taatatcaaa
    13021 tcagctaaga agcgcgccat tcagtctgaa aaggctcgta agcacaacgc aagccgtcgc
    13081 tctatgatgc gtactttcat caagaaagta tacgcagcta tcgaagctgg cgacaaagct
    13141 gctgcacaga aagcatttaa cgaaatgcaa ccgatcgtgg accgtcaggc tgctaaaggt
    13201 ctgatccaca aaaacaaagc tgcacgtcat aaggctaacc tgactgcaca gatcaacaaa
    13261 ctggcttaat cgccaatttg ctgaagcttt gtgaaaaagc ccgcgcaagc gggttttttt
    13321 atgcctgctg cttttatgat gcgtgagaga acacactacc ggttgccaga tagtcaaaag
    13381 atgctggctt ttgcagacac gccgttacac tttctgaact cttcgtggct taagaatcgt
    13441 agaaccatcg gctgatacat tctgaacaag aatatctact
//
LOCUS       DAJVUY010000111        13357 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.111, whole genome shotgun sequence.
ACCESSION   DAJVUY010000111 DAJVUY010000000
VERSION     DAJVUY010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13357
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.111"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(161..1084)
                     /gene="dmlR"
                     /locus_tag="OQQ72_002902"
     CDS             complement(161..1084)
                     /gene="dmlR"
                     /locus_tag="OQQ72_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DmlR"
                     /protein_id="HCS2012558.1"
                     /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE
                     QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS
                     FGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK
                     LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKV
                     TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS
                     RLATSAKVRITVEFLRQYFAEHYPNFSLEHA"
     gene            1187..2272
                     /gene="dmlA"
                     /locus_tag="OQQ72_002903"
     CDS             1187..2272
                     /gene="dmlA"
                     /locus_tag="OQQ72_002903"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HCS2012559.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YINLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTYATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            2522..4132
                     /gene="yeaV"
                     /locus_tag="OQQ72_002904"
     CDS             2522..4132
                     /gene="yeaV"
                     /locus_tag="OQQ72_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HCS2012560.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSST
                     LYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFH
                     VRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSA
                     LTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPT
                     EFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTR
                     VSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQ
                     QVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWC
                     VVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPAHQV
                     EHYLPQTPVEALEKTPVIPAGTVFKGDN"
     gene            4164..5288
                     /gene="yeaW"
                     /locus_tag="OQQ72_002905"
     CDS             4164..5288
                     /gene="yeaW"
                     /locus_tag="OQQ72_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HCS2012561.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            5344..6309
                     /gene="yeaX"
                     /locus_tag="OQQ72_002906"
     CDS             5344..6309
                     /gene="yeaX"
                     /locus_tag="OQQ72_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HCS2012562.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(6363..7478)
                     /gene="rnd"
                     /locus_tag="OQQ72_002907"
     CDS             complement(6363..7478)
                     /gene="rnd"
                     /locus_tag="OQQ72_002907"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HCS2012563.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KAQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(7559..9244)
                     /gene="fadD"
                     /locus_tag="OQQ72_002908"
     CDS             complement(7559..9244)
                     /gene="fadD"
                     /locus_tag="OQQ72_002908"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HCS2012564.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGVGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAVVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKAPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(9449..10030)
                     /gene="yeaY"
                     /locus_tag="OQQ72_002909"
     CDS             complement(9449..10030)
                     /gene="yeaY"
                     /locus_tag="OQQ72_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HCS2012565.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGRSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE"
     gene            complement(10070..10765)
                     /gene="tsaB"
                     /locus_tag="OQQ72_002910"
     CDS             complement(10070..10765)
                     /gene="tsaB"
                     /locus_tag="OQQ72_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCS2012566.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(10823..12733)
                     /locus_tag="OQQ72_002911"
     CDS             complement(10823..12733)
                     /locus_tag="OQQ72_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HCS2012567.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            12865..13209
                     /locus_tag="OQQ72_002912"
     CDS             12865..13209
                     /locus_tag="OQQ72_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS2012568.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
BASE COUNT         3195 a         3553 c         3332 g         3277 t
ORIGIN      
        1 tccagtaatt cagaaccccg tattcagcga acacattaac ctctttaatt atctttcgat
       61 catgcgcgat taaaggtgaa tatgctaacc aatctgtagc ggcttagaaa ggagaaaatc
      121 aggttttaac ccgatatcaa cccgataatt gaatcattaa tcaggcatgc tccagtgaaa
      181 aattcgggta gtgctcggca aaatactggc gtaaaaattc taccgttatc cgcactttcg
      241 ctgacgtcgc cagccttgaa acataaacgg cccagacgtt cgctggctgg taatattccg
      301 gtagcacttg cactaaatga ccactggcaa tgttttcgct aacatcccac caggaacgca
      361 gagcaatccc ctgcccatcg agacaccact gatggacaat ttctccatga ttagacgaca
      421 gtgggccggt gactttaatc gcatggtggc cttctttatt gcgtaattgc cagacaccaa
      481 aaggatgatc gcgctcttta atgaccaggc acggcaatgc agaaagatcg gttaaatgtt
      541 tcggcgcgcc atgttgcgca ataaattccg gcgacgcgca gagaatgcgg taattggtcg
      601 ccagtttgcg ggcgattaaa ttaggggcga tgtcatcgcc aatgcgaata tcgagatcga
      661 caccttcatt gaccaaatcg accagccggt cttccacatc aaaacgtaat tccagttgcg
      721 gatacgcctt cgccagcgct gataacgccg gagccaccac ctgtcgtcca aaaccaaagc
      781 tgctgataat acgcagcatc ccctgtggca cctgacgcac gtcagaaagt tcgtccatca
      841 tctgaccgac atcctgcaaa atccgctgcg cccattcata aatccgctct ccttcttcgg
      901 taatggtgac gcggcgggtg gtgcggtgta acaacaccac gtttagcgtt tgctccagca
      961 aggcgatgcg cttgctgacg aacgccggtg aaacgcccag ttcttccgcc acggcggcaa
     1021 aaccagcccg acgagccacc agcataaaga cgcgcaaatc attcagcagc ggtaaattat
     1081 tcatgattcg tgttttatgt ttcaccagtt acggggatta attccttttc cgtcaattat
     1141 aggatggtga tgttgtcaat tttgatggtc aggaagtgag aacccaatga tgaaaacgat
     1201 gcgtattgct gcgatcccgg gagacgggat tggtaaagaa gtccttcctg aagggattcg
     1261 cgtgttacag gctgccgctg agcgctgggg cttcgacttg agttttgagc aaatggggtg
     1321 ggcgagctgc gagtattaca gccatcacgg taaaatgatg ccggacgact ggcatgagca
     1381 acttagccgt ttcgacgcca tctattttgg tgccgtcggc tggccggata ccgttccgga
     1441 ccatatttcg ttgtggggtt cgctgctgaa atttcgtcgt gaattcgacc agtacatcaa
     1501 cctgcgcccg gttcgtctct ttcctggcgt tccctgcccg ctggcgggaa aacagcctgg
     1561 cgacatcgat ttttacgtgg tcagggaaaa caccgaaggc gaatattcct cgctcggcgg
     1621 tagagtgaat gaaggtacag agcatgaagt cgtcattcag gaatcggtat ttacacgtcg
     1681 tggtgtcgat cgcattttgc gttatgcctt cgaacttgcg caaagccgcc cacgtaagac
     1741 gctaacttat gccactaaat cgaacggttt agccatcagc atgccgtact gggatgagcg
     1801 agtggaagca atggccgaga attacccgga gatccgctgg gacaagcagc atattgatat
     1861 tctctgcgcg cgttttgtga tgcagccgga acgcttcgat gtggtggtgg cgtccaattt
     1921 gtttggcgat atcctttccg atcttggccc ggcctgcacc ggcaccattg gcattgcccc
     1981 atccgccaac ctgaatccgg aacgcacttt cccgtcgctc ttcgagcctg tccacggttc
     2041 cgcgccggat atctacggga aaaatattgc taaccctatc gccacgattt gggccggggc
     2101 aatgatgctc gattttctcg gcaatggcga tgagcgtttc cagcaagcgc ataacggtat
     2161 tctggcagca attgaagaag tgattgctca cgggccgaaa acacctgata tgaaaggcaa
     2221 tgccaccacg ccacaggttg ccgacgcgat ttgcaaaatt attttgcgtt aaggtcaaac
     2281 cagtttattt gaaccgcgtc actgacgcgg ttttttattc gttctttgca gtaaataacc
     2341 tgcgtcattt caccttttat tgtttccgtt tcgtgtttta tggctttccg cattcttaat
     2401 tgtttaattt atgtaatatt caaataatca atttgttaaa cacaacatac aactcattac
     2461 cctgcaaata attacaactg gcaaaagcca gagacgggct tttatgccca ggagatgact
     2521 catgatgagc aatgttaaga aaaaagatgt gccgctgata agcatcagcc tggtggccat
     2581 tcttttcatc gcagctgcat taagcctttt cccacaacaa tcggccgacg cggccaacgc
     2641 aatatacact tttgttacgc gtacgttagg ttccgccgta caggtattgg ttttgctggc
     2701 aatgggactg gtgatttatt tagccaccag taaatacggc aatattcgtc ttggcgaagg
     2761 aaaaccggaa tacagcacgc tctcctggct gtttatgttt atttgtgccg gtttaggttc
     2821 ttctacgctt tattgggggg ttgctgaatg ggcctattat tatcaaacac ctggattaaa
     2881 tatcgcaccg cgttcacaac aggcactcga atttagcgtt ccctactctt tcttccactg
     2941 gggcatcagc gcctgggcaa cttatacgct ggcctcatta atcatggctt atcactttca
     3001 tgtgcggaaa aacaaaggtc tgagcctttc cggcattatt gctgctatta ccggcgttcg
     3061 cccgcaaggc ccatggggaa aactggttga tttgatgttc ctgatcgcca ctgtcggcgc
     3121 actgactatt tcccttgttg tcaccgcagc aacctttact cgtggacttt ccgcactgac
     3181 aggtttaccc gacaacttca ccgtgcaggc atttgtgatc ctgctttctg gcggcatttt
     3241 ttgcctaagc tcgtggattg gtatcaacaa cggtttgcaa cgtctgagca aaatggttgg
     3301 ctggggcgcg ttcctgctgc cattactggt gctgattgtc ggcccaaccg aatttattac
     3361 caacagcatc atcaatgcca tcggcctgac cacgcaaaac ttcctgcaaa tgagcttatt
     3421 caccgatccg cttggcgatg gttcatttac ccgcaactgg accgttttct actggctgtg
     3481 gtggatctca tacacccctg gcgtagcaat gtttgtcacc cgcgtttccc gcggtcgtaa
     3541 gattaaagaa gttatctggg gactgatcct cggcagcacc gtcggttgct ggttcttctt
     3601 cggcgtaatg gaaagctatg ccattcatca gtttatcaat ggcgtaatca acgtcccaca
     3661 ggtgctggaa acactgggcg gcgaaacagc tgtacagcaa gttctgatgt cgttgccagc
     3721 cggtaaattg ttcctcgccg catacctggg cgtgatgatt attttccttg cctcgcatat
     3781 ggatgcagtg gcctacacca tggcggcgac cagtacgcgt aatctccagg aaggtgacga
     3841 tcctgaccgt gggctgcgtc ttttctggtg cgtggtgatc actctgatcc cgctttccat
     3901 cttgtttacc ggtgcttcgc tggaaacgat gaaaaccacc gtcgtgctca cagcccttcc
     3961 cttcctcgtc attttactgg tgaaagtcgg cggatttatt cgctggctga aacaggatta
     4021 cgccgacatt ccggctcatc aagttgaaca ttatctcccg cagacaccgg ttgaagccct
     4081 ggaaaaaaca ccagtgatcc ctgcgggaac cgtattcaaa ggcgacaact gagcgccatc
     4141 atcctaacga taaaggtatc cctatgagca atctgagccc tgactttgta ctacccgaaa
     4201 atttttgcgc taacccgcaa gaggcgtgga ccattcctgc ccgtttttat accgatcaga
     4261 acgcgtttga acacgaaaaa gagaacgtct tcgccaaaag ctggatttgc gtcgctcaca
     4321 gcagcgaact ggcgaatgcc aatgattatg tgacgcgtga gatcattggc gaaagcatcg
     4381 tgctggtacg cggtcgtgat aaggttttgc gcgcgttcta taacgtgtgt ccgcaccgtg
     4441 gtcatcagtt gttgagcggt gaaggaaaag caaaaaatgt gattacctgc ccgtatcacg
     4501 catgggcatt caaactcgat ggcaatctgg cccatgcacg taactgcgaa aacgtcgcca
     4561 atttcgatag cgacaaagcg caactggttc cggtgcgtct ggaagaatat gccggattcg
     4621 tcttcatcaa catggacccc aacgccacca gcgtagaaga tcagttaccc ggtctgggcg
     4681 cgaaagtgct ggaagcctgc ccggaagtcc acgatctgaa actggcggcc cgctttacca
     4741 cccgcacgtc tgccaactgg aagaacattg tcgataacta tctcgagtgc tatcactgtg
     4801 gtccggcgca tccaggtttc tccgactccg tacaggttga tcgttactgg cacaccatgc
     4861 acggtaactg gacgctgcaa tacggtttcg ccaaaccgtc cgaacagtcg tttaaatttg
     4921 aagagggtac ggatgcggca ttccacggtt tctggctgtg gccgtgcacg atgctgaacg
     4981 tcaccccgat caaagggatg atgacggtca tttatgaatt cccggtggat tctgaaacta
     5041 ccctgcaaaa ctacgatatt tacttcacca atgaagagtt aaccgacgag caaaaatcgc
     5101 tgattgagtg gtatcgcgat gtgttccgtc cggaagattt acgtctggtt gaaagcgtac
     5161 agaaagggct gaaatcgcgt ggctatcgtg gtcaggggcg catcatggcc gacagtagcg
     5221 gtagtggcat ttccgaacat ggtatcgccc atttccataa tctgctggcg caggtgttta
     5281 aggactaatg acatcggcgg cggtattttc cgctgctggg ctgatttttg atggagtaca
     5341 gcaatgtcag actatcaaat gtttgaagta caggtgagcc aggttgaacc ccttaccgaa
     5401 caggtgaaac gcttcacgct ggtggcaacc gatggcaaac cgctgcctgc gttcaccgga
     5461 ggaagtcacg tcattgtgca gatgagcgat ggtgataacc agtacagcaa tgcgtattca
     5521 ctactgagtt cgccgcatga cacctcttgt tatcagattg ccgttcggct ggaggaaaac
     5581 tcgcgcggcg gttcccgctt tttgcatcag caggtaaaag tgggcaatcg gttaacgatt
     5641 tcaacgccta ataacctgtt tgcgctaatt ccctcagcca gaaagcatct gtttatcgcg
     5701 ggcggtattg gtatcacccc tttcctgtcg cacatggcag agctgcaaca cagcgacgtc
     5761 gactggcagc tacattactg ctcgcgaaat ccagaaagtt gcgcatttcg tgatgagcta
     5821 gtccagcatc cgcaggctga gaaagttcac ttgcatcact catcaaccgg aacacgactg
     5881 gaattagcgc gattattggc ggatatcgaa cctggcacac acgtttatac ctgtggtccc
     5941 gaggcgctaa atgaagcggt aagaagtgaa gctgcgcgtc tggacatcgc cgccgatacg
     6001 ctgcactttg agcaatttgc tatcgaagac aaaaccggcg atgcctttac cctggtgctt
     6061 gcccgttccg gaaaagagtt tgtggtgccg gaagagatga ctattttgca ggttattgaa
     6121 aataataaag ccgcgaaagt ggaatgttta tgtcgtgaag gggtatgcgg aacctgcgaa
     6181 acagcaatac tggaaggtga agctgaccat cgggatcagt attttagcga tgaagagcgt
     6241 gccagccagc aaagtatgtt gatctgttgt tcgcgtgcga agggtaaacg cctggtgttg
     6301 gatttgtagt ttgccaaagc cggatgtggc gctgagcgcg cccagtccgg cttcggaaga
     6361 ttttactgcg gatattcctg caataaattg tgtaatgctt ccgccatcag ctcaccacgc
     6421 cagccggaaa tcagctccgg caaattgttc tgcggtttca gtttccagtg ccagttcagc
     6481 agttggttga tttgccgacg cgatgccagc aattcggcgc tgatcttatg cgtttcgctc
     6541 acgtcagtaa tcagcgactt aatcgcttta aacgctttac gataaccagg catgtccatc
     6601 aggttaagca tcggctgcgg taaggcctct tccggcaatg tctgcgcttt ttccaccagc
     6661 gtcagcagcg ttttaccgtg aaagcggatt tcgctaccgg ataaacccag gctgtccagt
     6721 tcgcctaaac ttcccggcat ataacgcgcg accgaccaca aatgctcttc acgcacgaca
     6781 aagttcaccg ccagatcacg ctctcgcgcc ttgcgcagtc gccagtcggc taacagttgc
     6841 agacaggcca gttggcgtgt gcgtaactgc caggcattgg tgatatcacg ccaggcatct
     6901 tccggcgcaa cgacttcctg acgacgcatt tgcatcaggc ggcattcatc cagcgccgca
     6961 ggtagccagc cggaggcctc cgtttctacc ataagcttgg cggtgatcgg taacagatac
     7021 cagacatccg ccgctgcgta ttcacactga cgttcggtca gcggtctggc cagccagtcg
     7081 gtgcgcgatt cactcttgtc cagcgtaacg ccggaatact cttccaccat ggaagcgaaa
     7141 ccccatgaca tcgggcgtcc gcagaaggca gaaaggattt gcgtgtcaat caagggttgt
     7201 ggtaattcgc caaagacatt gaggaacact tccagatctt cactgcctgc atggagaaat
     7261 tttgtgatgg acggatcgcg caggatcgct ttcagcggtg accagtcggt gatcccgaga
     7321 ggatcaatta gcgccagatg ctcgccatcg aaaagttgaa tcaaccccag ctgcgggtaa
     7381 taagtgcgcg tacgaacaaa ttcagtatcc agggctatcg ccggaaaggc acggacggct
     7441 tcacacaaag aagccagcgc atcgtccgtg gtaatcattt ggtaattcaa attgttttct
     7501 ctttagtggg cgtcaaaaaa acgccggatt aaccggcgtc tgacgactga cttaacgctc
     7561 aggctttatt gtccactttg ccgcgcgctt cgtcacgtaa ttctcgtcgc aaaatttttc
     7621 cgacgttaga tttcggtaac tcatcacgaa actccaccag cttcggtact ttgtatcccg
     7681 tgagctgacg gcggcaaaaa gtcaccagtg actcttcggt aagcgatgga gcttttttca
     7741 ctacgaagat tttcaccgct tcaccactgg agccggaagg tacgccaaca gccgcgactt
     7801 cctgtacgcc aggatgctgc atgacgacat cttcaatctc gttgggatag acgttaaaac
     7861 cggaaaccag aatcatgtct tttttacgat cgacaatgcg caggaatcct tcttcatcca
     7921 ttaccgcgat gtcgccggtg tgtaaccagc catttttgat gatttcatcg gtagcatcgg
     7981 gacgctgcca gtaacccagc atcacctgcg gtcctttgac acaaagctca cccggttgac
     8041 ctggtggtac ttcattatca tcatcatcca ccagtttggc ttccgtcgac ggcaccggca
     8101 aaccgatgct accactatga taatcaatat catatgggtt aacgctgacc agcggcgcac
     8161 actcggtaag gccatagcct tccagcagat actgtccggt cagtttcacc caacgctctg
     8221 ccaccacttg ctgcactggc atcccaccgc ctgcggaaag atgcagactg gagaaatcca
     8281 gctgctggaa ctctttattg ttcagcaacg cattgaacaa ggtgttaacg ccagtgatag
     8341 cggtaaacgg atatttcgct aactctttta ccaaccctgg aatatcacgc gggttagtga
     8401 taagcaggtt ctgcccaccc agttcgataa acagcaggca gttaatggtc agggcaaaaa
     8461 tgtgatacag cggcagtgcc gttactacca gttctttacc tggatgcagc aacggcccat
     8521 aggtggcgtt gacctgttcc aggttcgcca gcatattgcg gtgagtcagc atcgcgcctt
     8581 tcgccacacc tgtggtgccg ccggtgtatt gcaggaaggc taaatcttcc ggcaccagtt
     8641 cgggtttgac gtactgcatc cggtagccgt tatgcagtgc gctacgaaat gaaatggcat
     8701 ctggcagatg gtatttcggc accaaacgct tgatgtattt aacaacgaaa ttgactaccg
     8761 tgccttttgc cgtagatagc tgatcgccca tacgggtcag aattacgtgc tgaacggcgg
     8821 ttttatcaac cactttttcc agtgtgtgag caaagttaga cacgataaca accgccgatg
     8881 cgccgctatc gttaagctga tgctcaagct cacgcggggt atacaacggg ttaacgttta
     8941 cgacgatcat cccggcacgc aaaatgccaa acagcgccac cggatattgc aataaattag
     9001 gcatcatcaa cgcaacgcga tcgcctttct tcagccccac cccttgttgc aaataagcgg
     9061 caaacgcgcg actgcgttct tccagcttgc ggaaggtcat cacctccccc atattcacaa
     9121 acgcaggctg atcggcgtag cgcgcgaccg actgctcaaa catatctacc agagattgat
     9181 aacggtcagg gttgatctcc gtcggaacgt ccgcgggata acggttaagc caaaccttct
     9241 tcaattcttc acctctaaaa tgcgtgttcg tcgtcatcgc aaccccaaat gatatacata
     9301 ccgttaacat aatattaact catcatacca gcttgataat tacccaacga aaaggttgcg
     9361 aagcgcgtca ctatttattt ttatctttac cgtaagaatg cagaaacagc ggaccagccg
     9421 ctgtttcttt ttctttaaaa acaagcaatt attcagttac aactgtttgt actctcgcgg
     9481 gaccgggatt ataccagccc catccgccgt agccataggg ccagccacga ccgccataaa
     9541 accatggatc aatcggctga ggcggcataa tcacctgctg ggttaaatgc caacgtttgt
     9601 aacccgttac ttgcatcacc ataaatttat agggcgtatt gccgattttg ccgtcaaccg
     9661 caccagtgat tggcccgact accgtaacca gttgtccacg gaaatccacc gggtccagaa
     9721 aaccgttcac atcggcataa atgcgaccgc gagaaggttc tcccagcgtc ggtctggctc
     9781 cgctgtccag cggtacggta gcaatttcca ggcgggtttt cccttgctgg ttttgtaccg
     9841 caaccacttt gccaccaaag cgtgcctcct gaccaacgta cagctgcggc gcactcatca
     9901 cccgaactaa atcttgttgc ggcgtgggac tgcggccttt aatggcgtcc ggcacagtga
     9961 cacaaccgct cagcattagc gcaaacgtac ctgccagtat gcctttgata acattctttt
    10021 gaaccgccat gatgcgactc ctttttttct cagagcatac tcttaagatt cattctttgc
    10081 ccggaagttt cttccatgcg acgttgttac gtaaataaac cggttcggca tgttccaccg
    10141 ccaccgtttt accctcggca aatatctgac acgcaatcgg cagcatatct tccgtcgctg
    10201 gcagtaaaac ttctccgtcg cgcaaaacca gcccgctctc tttaccgaga tccggccagg
    10261 cttgccagcc cgtccctacc gttacccatt cgccggaaag ctgttgcatt cgttcatgaa
    10321 cgagttcggg tttgagtacg gcttcggttt cttcaccgcg ccagataccg ttttcatcac
    10381 gctgatattc ggcccagtaa acttcgccca tccgcgcatc aatggcagcc agcacgcggg
    10441 ttgcgccgtt tttgcgccac gccccttgcg ccattgtcat tagcgtggag acgccaatca
    10501 tcggcagctc tgcgccaagt gccagccctt gcgcaatgcc aataccaatg cgcacgccgg
    10561 taaagctacc ggggccgcgc ccgtaagcca gagcgttaat atcagtcagg gaagttccgc
    10621 tggtggtcag gatatcctgc accatcggta agattcgttg agtatgttca cgagggcaaa
    10681 gctcaaaatg agcgttgaca gtaccgtcgt tccacagggc gacagagcag gcctctgtcg
    10741 cggtatcgat agccagaatt cgcatgggtc ttcgtgctta gatcaataaa aaggcgcgca
    10801 tcataccata ctccgtaaca aattacctgg aggatggtat cgcaaggaaa cgaaccgcac
    10861 gggcaatgtc acgggtgcgc ggcgcgggcg gcagactggc gagaaacgtc gcgccgtaag
    10921 ggcgcatcac cagccgattg tcacaaatca ccaaaacccc gcgatcgtcg gcgtcgcgaa
    10981 tcagtcgccc taccccctgc ttgagagtaa tcaccgcatc cggcagttgt acttcatcga
    11041 acgggtcgcc accgcgcaaa cggcaatctt ccatgcgcgc ttttaacagc gggtcatccg
    11101 gtgaggtaaa cggcaacttg tcgataatca ccaatgacaa tgtatcgcca cgcacgtcca
    11161 ccccttccca gaaactactg gttgccacaa gaagcgcgtt accggcgctg acaaattgct
    11221 gcaacagttg ccctttgctg gtttccccct gcaacaaaac gggaagcgtc atggtagcgc
    11281 ggaactgctc ggccagatca cgcatcatgg cgtgcgaggt acaaagcata aaacaacgac
    11341 cgttgttagc ttcgatgatc ggtcgcagca ttgccgctaa ctggcgagca gaacctggct
    11401 ggttggtttg cggcagattg cgcggcacac agagtaacgc ctggcggctg taatcaaacg
    11461 ggcttggcaa tagcaacgac tccgcctgtt ctatcccaag ccgcgaggtg aaatgatgca
    11521 gatcgtcgtt caccgacagc gttgctgagg tgaagatcca gctaccaggc ttttgcgcca
    11581 ttaactcttt gaatttatcc gccacgctga gcggcgtgag agccagagta aaatggcgcg
    11641 aagtgcattc gtaccagtag ctgtagcccg gctgattgat ctcttttagc cgcttcagcc
    11701 gtgtgcgata caacgtagcg cgctcaaatg ccgcatccag caaggcggaa cgccccagtg
    11761 acagtttcgc cacgtcataa caaagttcca gggtgtcatc gagcagtaaa aatgcccgct
    11821 gaatttgcgg attagctaac agctcacgca ggttaccgcg ataacctggc tcaccgagtt
    11881 gcagacgaaa atcctgcgca ctctgggcaa gacgatcagc gcacttttgt aactgctggg
    11941 tgtcttttaa ttcggtgcgg taggcgatgg tgatgtcttt tgccaggtcg agcagttgtc
    12001 gactggagag tgactgacca aaatactggc tggcaatgtc cggtagctgg tgggcttcgt
    12061 cgaagatcat gacgtccgct tccgggatca gttcgccaaa tccactctct ttaaccacca
    12121 tatccgccag aaagagatga tggtttacca ccaccacatc ggcgtccatc gcttttttac
    12181 gtgctttgac cacaaagcaa tctttataca tcgggcagtc gctgccaaga cagttgtcgt
    12241 tggtgctggt aaccagcggc cacgcctgtg aatcttccgc cacgctgacg caggtgctga
    12301 tatcaccatc gactgtttga ttagaccagg agcgcagcag gatcacatcg cttaagattt
    12361 gtaccggcag atcgcccccc gccagcgcct gctgttcgag acgttcgagg cagaggtagt
    12421 ttgagcgccc tttcagcagc gccacgttgc ccgtatattt caatgccttt gagactgttg
    12481 gcaaatcgcg gctgtagagc tgatcctgca acgcttttga gccggtcgag ataatgactt
    12541 tctttttcgc ccgcagcgca ggagccaggt aagcgtaggt tttgcccgta ccggttcctg
    12601 cttccaccac cagcggctgg cctttttcta tcgcctgggt gacggctacc gccatctgtc
    12661 gctgtggttc tcgcggctta aagcctggta tcgctttcgc cagctgaccg tctggtgcaa
    12721 aatcgtccgt cacactaccc cctgttgatt tgaacgggga ttatgtcagg atgagggcgc
    12781 tttcgccagt tgaagtggtg acggcaacct cacattgtgg cagtctttgc agcacgaaaa
    12841 tggaagtata atgaggacaa aatgatgact atcgttcgta tcgatgctga agcccgctgg
    12901 tctgatgtag taatccacaa caacacgctc tactacactg gtgtaccgga aaacctcgac
    12961 gccgatgctt ttgagcaaac cgccaacacg ctggcgcaga ttgacgccgt gctggaaaaa
    13021 cagggcagca ataaatcgag cattctggat gccaccattt tcctggctga taaaaacgac
    13081 ttcgcggcga tgaataaagc gtgggatgcc tgggttgtgg cgggtcatgc gccggtgcgc
    13141 tgcacggtgc aagcggggct gatgaacccg aagtataaag ttgaaattaa gattgtggct
    13201 gcggtgtaag ctttatcgaa gcaaaataag tcagacgatc atttatcgat aatactggtc
    13261 ggttttacat aaatcgacca gagattaaga tattactgtt gatgctcctg ctaattcatt
    13321 atttattttt ataatttcaa ttttagctat aaagcta
//
LOCUS       DAJVUY010000112        13311 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.112, whole genome shotgun sequence.
ACCESSION   DAJVUY010000112 DAJVUY010000000
VERSION     DAJVUY010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13311
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.112"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..308
                     /locus_tag="OQQ72_002913"
     CDS             <1..308
                     /locus_tag="OQQ72_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS2012569.1"
                     /translation="VLNGKINGNACIVVPLSTTRDHDKLNRGMHVEIASNVINGLQFF
                     DQQIRWAKADLVQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAILLIN"
     gene            507..788
                     /gene="ppiC"
                     /locus_tag="OQQ72_002914"
     CDS             507..788
                     /gene="ppiC"
                     /locus_tag="OQQ72_002914"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS2012570.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSG
                     KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN"
     gene            complement(875..2350)
                     /gene="ilvC"
                     /locus_tag="OQQ72_002915"
     CDS             complement(875..2350)
                     /gene="ilvC"
                     /locus_tag="OQQ72_002915"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HCS2012571.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            2500..3390
                     /gene="ilvY"
                     /locus_tag="OQQ72_002916"
     CDS             2500..3390
                     /gene="ilvY"
                     /locus_tag="OQQ72_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HCS2012572.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(3387..4931)
                     /gene="ilvA"
                     /locus_tag="OQQ72_002917"
     CDS             complement(3387..4931)
                     /gene="ilvA"
                     /locus_tag="OQQ72_002917"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HCS2012573.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4934..6784)
                     /gene="ilvD"
                     /locus_tag="OQQ72_002918"
     CDS             complement(4934..6784)
                     /gene="ilvD"
                     /locus_tag="OQQ72_002918"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCS2012574.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6849..7778)
                     /gene="ilvE"
                     /locus_tag="OQQ72_002919"
     CDS             complement(6849..7778)
                     /gene="ilvE"
                     /locus_tag="OQQ72_002919"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HCS2012575.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7798..8061)
                     /gene="ilvM"
                     /locus_tag="OQQ72_002920"
     CDS             complement(7798..8061)
                     /gene="ilvM"
                     /locus_tag="OQQ72_002920"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HCS2012576.1"
                     /translation="MMQYQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(8058..9704)
                     /locus_tag="OQQ72_002921"
     CDS             complement(8058..9704)
                     /locus_tag="OQQ72_002921"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HCS2012577.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9707..9757)
                     /locus_tag="OQQ72_002922"
     CDS             complement(9707..9757)
                     /locus_tag="OQQ72_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012578.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9844..9942)
                     /gene="ilvL"
                     /locus_tag="OQQ72_002923"
     CDS             complement(9844..9942)
                     /gene="ilvL"
                     /locus_tag="OQQ72_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HCS2012579.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            10294..11814
                     /locus_tag="OQQ72_002924"
                     /pseudo
     CDS             10294..11814
                     /locus_tag="OQQ72_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
     gene            complement(11838..12176)
                     /gene="maoP"
                     /locus_tag="OQQ72_002925"
     CDS             complement(11838..12176)
                     /gene="maoP"
                     /locus_tag="OQQ72_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HCS2012580.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            12295..13134
                     /gene="hdfR"
                     /locus_tag="OQQ72_002926"
     CDS             12295..13134
                     /gene="hdfR"
                     /locus_tag="OQQ72_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HCS2012581.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(13230..13305)
                     /locus_tag="OQQ72_002927"
     tRNA            complement(13230..13305)
                     /locus_tag="OQQ72_002927"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13270..13272),aa:Trp,seq:cca)
BASE COUNT         3089 a         3600 c         3449 g         3173 t
ORIGIN      
        1 tcgtgctcaa cggaaaaatt aatggcaacg catgtatcgt cgttccatta tcaaccactc
       61 gcgatcatga caagttaaat cgtggaatgc atgttgaaat agccagtaat gttatcaatg
      121 gcctgcaatt ctttgatcag cagattcgtt gggccaaagc cgacctggta caacaagtca
      181 gtcgaaaccg attaaataga gcaaggactt acagagggta tcttaatcaa tgtttgccac
      241 atgagttggt tgcagacata cagagggcgg tcatcaagtc aatcaatgcc atattgctca
      301 taaattgaca ataaaataac catccccgat aatgactttg tagcccatag aggccctaag
      361 ttttctcccc ttgagggacc tgcgaagccc ggattttccg ggcttttgcc atatatgtac
      421 cagcccctcc ctgactgaca attacgttag catctgcgga tcatgctaaa atcgccgcct
      481 gacaattatt cactcaaggc acgatcatgg caaaaacagc agcagcactg catatccttg
      541 taaaagaaga gaaactggct ctggatcttc tcgagcagat taagaacggt gccgatttcg
      601 gcaagctggc gaagaaacac tccatttgcc catcaggcaa acgcggcggt gatttaggtg
      661 aattccgcca gggtcagatg gttccggcgt tcgataaagt tgtgttctct tgtccggtac
      721 tggagccgac cggcccgctg cacacccagt tcggttacca catcattaag gtgctgtacc
      781 gtaactaata gcaaggcctt ctccaggaga aggccttgag tgttttctcc ctctccctgt
      841 gggagagggt cggggtgagg gcatcagcgc gcacttaacc cgcaactgca atacgtttca
      901 tatccgtcat atagccgcgc agtttcttac ctacctgctc aatcgcatgg cagcgaatcg
      961 cttcgttcac atcacgcagt tgcgcgttat ctaccgcacc ttccggaata gctttaccca
     1021 gatcgcccgg ttgcagctct gccataaacg gtttcagcaa cggcacacaa gcgtaagaga
     1081 acagatagtt accgtactca gcggtatcag agataaccac gttcatttcg tacagacgct
     1141 tacgggcgat ggtgttggca atcagcggca gctcgtgcag tgattcataa tatgcagact
     1201 cttcaatgat gccggaatcg accatggttt caaacgccag ctcaacgccc gctttcacca
     1261 tcgcgatcat cagtacgcct ttatcgaagt actcctgctc gccgattttg ccttcatact
     1321 gcggcgcggt ttcgaaggcg gttttgccgg tctcttcacg ccaggtcagc agtttcttat
     1381 catcgttggc ccagtccgcc atcataccgg aggagaattc gccggagatg atgtcgtcca
     1441 tatgtttctg gaacaggggt gccatgatct ctttcagctg ttcagacagc gcgtaagcac
     1501 gcagtttcgc cgggttagag agacggtcca tcatcagggt gatgccgccc tgcttcagcg
     1561 cttcggtgat ggtttcccaa ccgaactgaa ttagtttttc tgcgtatgcc ggatcggtgc
     1621 cctcttccac cagcttgtcg aagcacagca gcgagccagc ctgcaacata ccgcacagga
     1681 tggtttgctc acccatcagg tcagatttca cttccgcaac gaaggacgat tccagcacgc
     1741 ccgcacggtg accaccggtt gctgccgccc atgctttagc gatcgccatg ccttcgcctt
     1801 tcggatcgtt ttccgggtga acggcaatca gcgtcggtac gccgaatcca cgtttgtact
     1861 cttcacgcac ttcggtgcca gggcatttcg gcgcaaccat gactacggtg atgtctttac
     1921 ggatctgctc gcccacttcg acgatgttga aaccgtgcga gtaacccagc gccgcgccgt
     1981 ctttcatcag tggctgtacg gtgcgcacta cgtcggagtg ctgcttgtct ggcgtcaggt
     2041 taaccaccaa atccgcctgc gggatcagtt cttcgtaagt gcccacttta aaaccgtttt
     2101 cggtcgcttt acgccaggat gcgcgcttct cggcaatcgc ttctttacgc agagcgtagg
     2161 agatatcgag accagaatca cgcatgttca ggccctggtt cagcccctgt gcgccacagc
     2221 cgacgataac cactttttta ccctgaaggt agctcgcgcc gtcggcgaat tcgtcgcgcc
     2281 ccataaagcg acatttgccc agctgtgcca gctgctggcg caggttcagt gtattgaagt
     2341 agttagccat ggtgattcct cgtgatgttg tgcttcttat tgttcggttc gcgtttgcga
     2401 gattgaattc actatatgac aggaaattta ttgcggaaat tgatatattc acaacgtcac
     2461 attgcaattt ctgcaacgtc aacattgagg gctgctccat tggatttacg cgatctgaaa
     2521 accttcctgc atctggcgga aagccgccat tttggccgca gcgcgcgggc gatgcacgtt
     2581 agcccatcca cgctctcacg gcagattcag cgcctggaag aagatcttgg tcagccgcta
     2641 tttgtgcgcg ataaccgcac ggtgacgctg actgaagcgg gcgaagagct gcgcgttttc
     2701 gcccagcaaa cgctgttgca gtatcagcag ttgcgccaca ccatcgatca gcaagggccg
     2761 tcgctctctg gcgaattaca tatcttctgc tcggtgaccg ctgcctacag ccatctgcca
     2821 ccgattctcg accgcttccg cgcggaacac ccgtcggtgg agatcaaact aaccactggt
     2881 gatgcggcag atgcgatgga aaaggtagtc actggcgaag cggatctggc gattgccggg
     2941 aaaccggaga ctctgcccgg cgcagtggcg ttttcgatgc tggagaatct ggcagtagtg
     3001 ctgattgcgc ccgcgctgcc ctgcccggtg cgtaaccagg tttcgtcaga gaagccggac
     3061 tggtctacag tgccgtttat catggccgat cagggaccgg tacgccgccg cattgaactg
     3121 tggtttcgac gcaataaaat cagcaacccg atgatttacg ccacggttgg cgggcatgaa
     3181 gcgatggtat cgatggtggc gctcggctgt ggcgtggcgc tgttgccgga agtagtgctg
     3241 gaaaacagcc ccgaaccggt gcgtaaccgc gtgatgattt tagagcgcag cgatgaaaaa
     3301 acgccgtttg aactgggcgt ttgtgcgcag aaaaagcggc tgcatgagcc gctgattgag
     3361 gcgttctgga agattttgcc gaaccattaa cccgccaaaa agaacctgaa cgccggatta
     3421 ttggtttcgt cgtggcaatc gtagcccagc tcatttagcc gggtttcgaa atccggttca
     3481 tggtcgccga gttcgaacgc cgccagtacg cgcccgtagt cggtgccatg gctgcgatag
     3541 tggaacaaag aaatgttcca gtgcgtaccc agcgtgttga ggaagcgcag cagcgcgccc
     3601 ggtgattccg ggaattcgaa gctgtagagg cgttcctgca acggatgtga cggacgcccg
     3661 ccgaccatat agcgcacatg caacttcgcc atttcgtcgt cggagagatc caccacgctg
     3721 tagccgccgt cgttgagcat ctgcaaaatt tctttgcgct cttcgaggcc gcggctcagg
     3781 cgcacgccga caaagatgca ggcgtttttg gcatcggcaa aacggtagtt gaactcggtg
     3841 accgctcgcc cgccaagcag ttggcagaat ttgaggaagc tgcctttttc ttccggaatg
     3901 gtcaccgcca acaacgcttc acgctgttcg cccagttcgc agcgttccga gacgtagcgc
     3961 aggccgtgga agttcacgtt ggcaccggaa agaatatgcg ccagccgttc gccgcgaatg
     4021 ttgtgctggg cgatatattt tttcattccc gccagcgcca gcgcgccaga gggttccgcc
     4081 accgcgcgca catcttcgaa taaatccttc atcgccgcac agatcgcatc actatcgacg
     4141 gtgatgatgt cgtcgagata ctcctggcat aaacggaagg tttcgtcacc gatgcgtttt
     4201 accgctacgc cttcagcaaa tagccctacg cgcggcagat caaccggatg acccgcatcc
     4261 agcgctgctt tcaggcaggc ggagtcttcc gcttctacgg cgatcacttt gatttgtggc
     4321 atcagttgtt tgatcagcac cgcaacgccc gccgccagac cgccgccgcc gactggcaca
     4381 aatacgcggt cgagatgggc gtcctgctgg agcagttcca gcgccagcgt gccttgcccg
     4441 gcaatcacca tcggatggtc gaacggcggc acccaggtga acccctgctg ctgtgacagt
     4501 tcgatcgctt tagctttcgc ttcgtcaaag ttcgcgccat gaagcagcac ttcgccgccg
     4561 aatccacgta ccgcatcgac tttgatgtcg gcggtggcgg ttggcataac gatcagggcc
     4621 ttcacgccta accgcgcaga agaaaacgcg acgccctgcg cgtggttacc cgcagaagca
     4681 gtgatcacgc cgtgcgcttt ttgttcttcc gtcaggcccg ccatcatggc gtatgcgccg
     4741 cgcagcttaa agctgtgcac tggctggcga tcttcgcgct tcaccagaat gacgttatca
     4801 agacgcgacg acagtttttc cattttttgt agcggcgtaa cctgcgctgc ctcgtaaacc
     4861 ggcgcgcgca gcactgctct taaatattcg gcaccttccg gagcaccaga caggggttgc
     4921 gagtcagcca ttattaaccc cccagtttcg atttatcgcg caccgcacct ttgtcggcgc
     4981 tggttgccag gctggcgtag gcgcgcaggg caaaggaaac ctgacgttca cggtttttcg
     5041 gcgtccaggc tttgtcaccc cgagcttcct gcgcttcacg acgcgccgcc agttcggcat
     5101 cgcttacctg taactgaatg ccacggttcg ggatgtcgat agcgatcagg tcaccatctt
     5161 caatcagacc aatgctgccg ccgcttgccg cttccggtga gacgtggccg atggaaagac
     5221 cagaggtgcc gccagagaaa cgaccgtcgg tgatcagcgc acaggcttta ccgagaccca
     5281 ttgatttcag gaagctggtt gggtagagca tttcctgcat gccagggccg cctttcgggc
     5341 cttcatagcg gatcaccacc acatcgcccg cgacaacttt gccaccgagg atcgcttcta
     5401 ccgcgtcgtc ctggctttcg tacacttttg ccgggccggt gaatttgagg atgctgtcat
     5461 cgacgcccgc ggttttcacg atgcagccgt tttcagcaaa attaccgtag agcaccgcca
     5521 ggccgccgtc tttgctgtag gcgtgttcca gcgagcggat acagccgttt gcgcgatcgt
     5581 cgtccagcgt atcccaacgg caatcttgcg agaatgcctg ggtggtacgg atacccgcag
     5641 ggccggcgcg gaacatattt tttaccgcgt catcctgggt cagcataacg tcgtattgct
     5701 ccagcgtttg cggcaacgtc aggccgagca cgtttttcac atcacggttc agtaaccccg
     5761 cgcgatccag ttcgccgaga ataccgataa caccaccagc acggtgaaca tcttccatat
     5821 ggtatttctg ggtgctcggc gcaactttac acagctgtgg aaccttgcgg gaaagcttat
     5881 cgatatcact catggtgaag tcgatttccg cttcctgcgc cgccgccagc aggtgaagta
     5941 cggtgttagt cgatccaccc atcgcgatat ccagcgtcat ggcgttttca aacgccgcct
     6001 tactggcgat attacgcggc agtgcacttt cgtcgttttg ctcgtaataa cgtttggtca
     6061 attcaacaat gcgtttacca gcattaagga acagctgctt acggtccgcg tgggttgcca
     6121 gcagcgagcc gttgcctggc tgcgacaaac ccagcgcttc ggtcaggcag ttcattgagt
     6181 tagcggtaaa catcccggag caggaaccgc aggttgggca ggcggaacgt tcaacctgat
     6241 cgctctggga gtcagaaact ttcgggtctg cgccctggat catcgcatca accagatcga
     6301 gtttgattat ctgatcggac agtttggttt tcccggcctc catcgggccg ccggaaacaa
     6361 agatcaccgg aatattcagg cgcagggaag ccatcagcat ccccggggtg attttgtcgc
     6421 agttagagat gcagaccatg gcgtcggcgc agtgggcgtt gaccatatac tcaacggaat
     6481 cagcgatcag ttcgcgagat ggaagtgaat aaagcatccc cccgtggccc atggcaatcc
     6541 catcatccac cgcaatggtg ttgaactctt tggcaacgcc gccagccgct tcaatttgtt
     6601 cggcgaccag tttaccgaga tcgcgcagat ggacgtgacc cggtacaaat tgggtgaacg
     6661 agttcacaac cgcgataatc ggcttgccaa aatcggcgtc ggtcattccg gtggcgcgcc
     6721 acagcgcacg agcacccgcc atattacgac catgagtggt ggtggcggaa cggtacttag
     6781 gcatacttta tttactccca gtgtctgtct cgtaaatggg acggtgcgtg ccgtcccatt
     6841 ttttgtattt attgattaac ttgatctaac cagccccatt tatcttcggt ttcgccagtg
     6901 aagaggccga agaaggcttg ctgaatgcgt ttggtaaccg ggccacaacg gccttcgcca
     6961 acctgaatac cgtctacgct gcgcactggc gtgatttctg ccgcagtacc ggacataaac
     7021 acttcatccg ccaggtacag ggattcgcgc gacagcacct gctcacgcac ttcaattccc
     7081 agctctttcg ccagtttgat gatggcatca cgggtaatac ccggcagcgc ggatgaggta
     7141 aacggtgggg tgaacagcac gccgtctttc acttcaaaca ggttttcacc tgcgccttca
     7201 gagatgtaac cgttcacatc cagcgcgata ccttcctgat aaccgtggcg gcgcgcttcg
     7261 ctacccacca gcagggaaga gaggtagtta ccaccggctt ttgccgccgt cgggatggtg
     7321 tttggtgctg cgcggttcca ggaggaaacc atcgcatcga tcccctgctc cagcgcttct
     7381 gcgcccagat acgctcccca cgggaaagca gcgataatca cgtcggttga gtatcccgct
     7441 ggcgggttta ctcccatgcc aacatcaccg acgaagatca gcggacggat ataggcgctg
     7501 gtgagattat ttttgcggat cacgtcacga caagcttcca tcagctcatc aatgctctgc
     7561 gaaaccggga agcgatagat tttggcggag tcatgcagac gctgcatatg ctcacgatgg
     7621 cggaatacaa ccggtccttt gtgcgagtcg tagcaacgga tgccttcaaa aaccgaagtg
     7681 ccatagtgca gcgcgtgcga catcacatgc accttcgcgt cttcccagcg aaccatctcc
     7741 ccattgaacc aaatgtaatc agctttcttc gtggtcattt ttatattcct tttgcgctca
     7801 ggcgcggatt tgttgtgatg tggttgtgct ctggcagatg gcaacgtgtg cgacgtccac
     7861 cagtttattt aactgactaa acagtaagtc gaccgaccgt gggctggcaa cggtcaattc
     7921 gatatttata ttttgtgcat cgctggcggc ggccatattc attgagcaga cgtggaaacc
     7981 acgatgacgc accacgcgta aaacacgttc taaggtttcc ggattgaagc gagccgatac
     8041 attgacctga tattgcatca tgataatttc tccaacattt ctgaattact ggcgccaggc
     8101 ggcaccagcg gccagacgtt ctcaagttcg tcgattgaga catgaagcag gtatggccca
     8161 tcactgttca gcatggtgtc gagtgccgct tcaacctggt ctttacgggt gatgtgttgg
     8221 ccagggatgc cgaaggcgct ggctaacatg aggaaatcgg ggttatcagt aagggtggtt
     8281 tcgctgtatc gttcctgaaa aaacagttgc tgccattgtc gaaccatccc taaccgttgg
     8341 ttatcgagta agacgatttt caacggtaac tgcttgcgtt ttacggtgcc cagctcttgc
     8401 acattcatca tgaaagagcc gtcaccggag atacagacga cggtatcgtt cggtcgcgcg
     8461 acttgtgcgc caaccgccgc tggtaaacca aaacccatag tgcctaagcc gctggaggtg
     8521 atgaaatttt ccgggcgagt gtgggcgatg tgttgcgcag cccacatctg gtgctgcccc
     8581 acatctgtgg tcacgacgca atccgcaggt ttacgatccg acagttgttt taacaacaac
     8641 ggcgcgtaga tagcgtcgcc gggatggtcg taacgccagg catgttcatc acgcagctgc
     8701 gcgcagtatt gctgccagtc attgatattt aacggctgct gtaattctgg taacagagca
     8761 tttaaatcac cttgtaatgc cacatgtgcc tgacgcagct tgttcatttc tgccgggtcg
     8821 atatccatat ggataacgct ggcgtgtggt gcgaaggtgt tcagtttgcc ggtcacccgg
     8881 tcatcaaaac gtgcacccac ggcgatcagc aagtcgcact cctgcaccgc gaagttcgcc
     8941 gctttggtgc catgcattcc cagcatgccc agatagtacg gataatctgc ttcaactgcg
     9001 cccagccctt tcagcgtgca ggtggcaggc atttttgtgg tagcgagaaa ttctcgtaaa
     9061 gcaggaactg cctgcgccat acccacgcca ccaccaacgt acagcatcgg tttttgcgct
     9121 tttgccagca tctggcgcgc ttgctcaact tcggcatgtg ggaaagtcac ttcgttttca
     9181 acggtggtga accacggttc caggtcaccg ctggctagct ggatatcttt tgggatatcg
     9241 accagaaccg gaccaggacg acctgagctg gcaacgtcga atgcttcagc cataatgcgc
     9301 ggcaactctt ccagcgactg caccagaaag ctgtgcttgg tacaggctaa cgacaatccc
     9361 aggacatcca cttcctgaaa tgcatcagtg ccgataaacg gtgcggacac ttgaccggtg
     9421 atggcaacaa cagggataga atctaacagt gcgtccgcaa gcccggttat caggttggtt
     9481 gcgcccggac cagacgtggc gatacatacg ccagttttgc cggtagcacg ggcataaccg
     9541 atagccgcca ttgccgcacc ctgctcatgt cggcacagca agtgctccac gccgccgtca
     9601 tacaatgcat cgtaaaccgg cataattgcg ccacccggat aaccgaaaac ggtgttcaca
     9661 ccctgtgccc gcaacgcatg taccacccac tgtgcgccat tcatagttag ttccccgtgc
     9721 tgaatgttga gaaacagaat tttgtgctgt tattcattgt ctgctcctcg gttatgtttt
     9781 taaggtcaaa aaaaaccccc ggacctttcg gtgcgggggt cttagttcgt taaggcttga
     9841 tttctaagcc tttcctcgtc caagtgcagc cccgcacggt gggataataa tcaccaccac
     9901 gctaatcacg accaggctaa tcactcgtag aagggctgtc attttgtctt ttcttgcatc
     9961 ttgttcgaag gaatgcctaa agagttacca taggttttgt aaatagtaca agatattttt
    10021 tggccgattt ttatgatgcg tttaataatt tcaatataag ttgttgtttt ttaaaaataa
    10081 aatagtgagt aaaaaaattc aatttcagta tgaatgttgt tcccttcctc gtagttcatc
    10141 ctttgtccgc tgcatttttg cgagcatcat tccaccgcca gaacaactca acttcacttg
    10201 cacaaataaa caggaatcag ccactaaaat tcacgaatta gcgggctaca gcagcgatat
    10261 cttatgcaca taatggtgac tcaaggaggg cttatgtcac tgtcaattgt tcatacccgc
    10321 gcagccctgg gagtaaatgc gcccccgatc actgttgagg tacatatcag taaaggtcta
    10381 cccggcttaa cgaaggtggg cttaccagaa acaacggtaa aagaagctcg cgatcgcgtg
    10441 cgcagcgcca ttatcaatag cggatatgaa tatccggcga aaaaaatcac catcaacctg
    10501 gctccagctg atctgccaaa agaaggggga cgatatgatt tacctatcgc cattgcgttg
    10561 ctggcggcct cagaacagct tacagccaat aagttagatg aatatggatt agtcggagaa
    10621 ctggcgctta caggcgctct gcgtggcgtt cccggcgcaa tctccagtac aactgaagct
    10681 attaagtcgg gcagaaaaat tatcgtcgcg aaagataacg aagatgaagt ggggctaatt
    10741 aacggtgaag gatgcctgat agccgatcat ctgcaagctg tctgtgcgtt tctggaaggt
    10801 aagcacgctc tcgaacgccc gaaaccaact gatgcagtat cccgggcgct acaacatgat
    10861 ctcagtgatg ttatcggtca ggaacaagga aagcgaggac tggaaattac cgccgctggc
    10921 gggcacaacc ttttactgat tgggccgccg ggaacaggta aaacaatgct cgccagccgt
    10981 attaatggcc tgttgccaga tttaagcaat gaagaggcac tggagagtgc tgcgatatta
    11041 agtctggtaa atgctgaatc agtacaaaaa caatggcggc agcgcccgtt ccgctcacct
    11101 catcacagtg catcgttaac tgcgatggta ggcggtggcg caattccagg gcccggtgaa
    11161 atttcgctgg cgcataacgg cgtgcttttt cttgatgagt tacctgaatt tgaaaggcgt
    11221 acactggatg ccttgcgaga gccgattgaa tccgggcaga tccatctttc acgcacgcga
    11281 gcaaaaataa cctatccagc ccgtttccag cttgtcgcgg cgatgaatcc cagccctacc
    11341 ggacattatc agggaaacca taaccgctgc acaccagagc aaacgctgcg ttatctcaac
    11401 cgactctctg gtccctttct cgaccgcttc gatctctcac tggagatccc attaccgcct
    11461 cccggtattt tgagtaaaac ggtagtgccg ggagaaagca gcgccaccgt taaacaacgc
    11521 gtaatggccg ccagagagcg ccaatttaag cggcagaata aactgaacgc ctggctggat
    11581 agtccggaaa tacgccaatt ctgcaaactt gagagcgaag atgcgatgtg gctggaagaa
    11641 acgctgatcc atctggggtt atcgattcgt gcctagcagc ggttattgaa agttgcacga
    11701 accattgctg atattgatca gtctgacatt atcacacgtc aacatttgca ggaggcagtt
    11761 agctatcgag cgattgaccg tttgctcatc catctgcaga aactactgac ataaaaaagg
    11821 gcatttcgcc ctttttatta atcgtcagaa tcggtgtagt cttcagcacc ttcaacctgc
    11881 ggtttaccgc cggaaagggt gtgaaaacgt tttggacgct taatacgcgt catatacttg
    11941 gaccacacgc gttctgcttc tgtcactggc tcacgttcgc cacggcatac tgctacgaag
    12001 agtttctctt cctcggtaac cggctcgcgt ttgccaagat ccaactcatt gaaggcataa
    12061 ccatgacgct caagcagttg tgcctctttg atggtgaaat caccatgacg agagaatcca
    12121 cgtggataat gtttattgtc gaaatatcga ttagtcgtcg taaagctttc cgccatcctg
    12181 cacgctccta attctttgac cgagctagtt atggcgcgga gtattagtta cgcttgacag
    12241 agtgtaaaac aaaacattta aatcataacg acaaataatt ttgcggagag cactgtggat
    12301 acggaattgt taaaaacttt cctggaagtt agccgaacgc gtcactttgg tcgagcggct
    12361 gaatcgctct atctgaccca gtcagcagtg agctttcgaa tcagacaact ggaaaatcaa
    12421 ctgggtgtga accttttcac ccgccacaga aacaatatcc gtttaaccgc tgccggtgaa
    12481 aaactactgc cttatgcaga aacgctcatg agcacctggc aggccgcccg caaggaggtg
    12541 gcgcatacct cacgacataa cgagttttct atcggtgcca gcgcctcatt gtgggaatgt
    12601 atgcttaatc agtggctggg acgtttgtat caaaatcagg atgcccatac aggcttacag
    12661 ttcgaagcgc gaattgccca acggcagtct ctggtaaaac agctgcatga acgccagctt
    12721 gatcttctta ttaccactga agcgcccaaa atggacgaat ttagtagtca gttgctggga
    12781 tatttcactt tagcgcttta taccagtgcc ccttcaaaac taaagggaga tcttaattat
    12841 ctgcgacttg agtgggggcc agattttcaa cagcatgagg caggtttgat cggtgctgac
    12901 gaagtgccca ttctgacaac cagttctgct gaactggcac agcaacagat tgcgatgctt
    12961 aatggttgca cctggctacc cgtcagctgg gcgcgtaaaa aaggcggcct gcataccgtt
    13021 gtcgatagca caacactttc acggccgctt tatgccatat ggctgcaaaa tagcgataaa
    13081 aatgcgttga ttcgcgatct tttgaaaatt aacgtgctgg atgaagtgta ttaatatgaa
    13141 tggctggcaa ggatgccggt agaaggattt acttcggaga gggttatttc agataaaaaa
    13201 aatccttagc tttcgctaag gatgatttct ggcaggggcg gagagactcg aactcccaac
    13261 acccggtttt ggagaccggt gctctaccaa ttgaactacg cccctaatta g
//
LOCUS       DAJVUY010000113        13268 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.113, whole genome shotgun sequence.
ACCESSION   DAJVUY010000113 DAJVUY010000000
VERSION     DAJVUY010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13268
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.113"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ72_002928"
     CDS             complement(105..1196)
                     /gene="ychF"
                     /locus_tag="OQQ72_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCS2012582.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ72_002929"
     CDS             complement(1313..1897)
                     /gene="pth"
                     /locus_tag="OQQ72_002929"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS2012583.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ72_002930"
     CDS             2175..2453
                     /gene="ychH"
                     /locus_tag="OQQ72_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HCS2012584.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ72_002931"
     CDS             complement(2508..4187)
                     /gene="dauA"
                     /locus_tag="OQQ72_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HCS2012585.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVIIYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPISGRLAFFPNRRAAMADL"
     gene            complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ72_002932"
     CDS             complement(4312..5259)
                     /gene="prs"
                     /locus_tag="OQQ72_002932"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HCS2012586.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ72_002933"
     CDS             complement(5410..6261)
                     /gene="ispE"
                     /locus_tag="OQQ72_002933"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HCS2012587.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ72_002934"
     CDS             complement(6261..6884)
                     /gene="lolB"
                     /locus_tag="OQQ72_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HCS2012588.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ72_002935"
     CDS             7098..8354
                     /gene="hemA"
                     /locus_tag="OQQ72_002935"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041689438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HCS2012589.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ72_002936"
     CDS             8396..9478
                     /gene="prfA"
                     /locus_tag="OQQ72_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCS2012590.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ72_002937"
     CDS             9478..10311
                     /gene="prmC"
                     /locus_tag="OQQ72_002937"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS2012591.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGGREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            10308..10700
                     /locus_tag="OQQ72_002938"
     CDS             10308..10700
                     /locus_tag="OQQ72_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HCS2012592.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            10704..11513
                     /locus_tag="OQQ72_002939"
     CDS             10704..11513
                     /locus_tag="OQQ72_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HCS2012593.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ72_002940"
     CDS             11549..12403
                     /gene="kdsA"
                     /locus_tag="OQQ72_002940"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCS2012594.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
     gene            complement(12552..12659)
                     /locus_tag="OQQ72_002941"
     CDS             complement(12552..12659)
                     /locus_tag="OQQ72_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS2012595.1"
                     /translation="MTLAQFAMIFWHDLAAPILAGIITAAIVGWWRNRK"
     gene            complement(13087..13194)
                     /locus_tag="OQQ72_002942"
     CDS             complement(13087..13194)
                     /locus_tag="OQQ72_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS2012596.1"
                     /translation="MTLAKFAMIFWHDLAAPILAGIITAAIVGWWHNRK"
BASE COUNT         3284 a         3382 c         3431 g         3171 t
ORIGIN      
        1 cattaccgac tcggtgaaat gaaaaatcca cgcaattgcg tggattttat atacttttgc
       61 gctcttcatg agatttagcg aaacctcatg agacaataaa ttaattagac gttgaaaagg
      121 aagttcatca catcgccatc tttcacgatg taatctttac cttctgcacg cattttgcct
      181 gcttctttcg cgccttgttc acctttgtaa gtgatgaaat cttcaaacga gatggtttgt
      241 gcacggataa agcctttttc aaaatcagta tggattttgc ccgctgcctg cggcgcggtt
      301 gctccaaccg gaatggtcca tgcacgcact tctttcaccc cagcggtgaa gtaagtttgc
      361 aggttcagca gcttataacc ggcacggatc acacggttca ggcccggctc ttccagccca
      421 agctcctgca taaactcgtc acgttcttcg tcgtccagtt cggcaatgtc tgcttcaaca
      481 gcagcacaaa ccggaaccac aacagaacct tctttcgccg cgatttcacg cacctggtca
      541 agatatgggt tgttttcaaa accgtcttcg ttgacgttgg cgatgtacat tgttggtttc
      601 agcgtcagga agctcaggta acgaatagcc gctttctctt cagcgcttaa atccagcgcg
      661 cgcagcatac ctgcattttc caactggggc aggcattttt ccaggaccgc cagctcagct
      721 ttcgcgtctt tatcgccacc tttggctttc ttctgtacgc gatgaatcgc acgttcgcag
      781 gtgtcgaggt ctgccagcgc cagttcggtg ttgataactt caatatcgtc agccgggtta
      841 actttgccgg aaacgtgaat gatgttgtca ttttcaaagc agcgaacaac gtgaccgatc
      901 gcttcggttt cacggatgtt ggtcaggaac tggttaccca gaccttcgcc tttcgatgcg
      961 ccttttacca gaccggcgat atcgacaaat tccatggtcg tgggaagcgt acgctgcggt
     1021 tttacgattt cagccagttg atccaggcga ggatcaggca ttggtacgac gcctgtgttc
     1081 ggctcaatgg tgcagaatgg aaagttggcc gcttcaatac cggctttggt cagcgcgttg
     1141 aacagggtag atttcccgac gttgggcaaa ccgacgatac cgcatttgaa tcccatgatt
     1201 taaatcacct taatatctta ataatcaacc tgttattgct aacagattgc agaaatggaa
     1261 ataactttgc ctattataca cggcactcgg caaaaatgcc gcagacaacg acttattgcg
     1321 ctttaaaggc gtgcaatcgg ttcgttgctt tggtcaagcc atctgtaaac cacatttcag
     1381 tacaacgcgc cgcttcgtca atggcttcat caattaactt ctgttcacta acaggcggtt
     1441 tgcctaacac aaaaccgaca actttatttt tatcgcccgg atgaccgatt ccgatgcgta
     1501 aacggtgaaa gttagggtta ttacccaatt tactgatgat gtctttcagt ccattgtgac
     1561 caccatggcc accgcccaat ttaaatttgg cgacgccagg aggcagatcc agttcgtcgt
     1621 gggccaccag aatttcgtcc ggattaatgc ggaaaaaact ggccatcgcc gcaacggctt
     1681 tgccgctgag attcataaat gtagtcggga ctaacaggcg gacatcttcg cctccaagag
     1741 tgactcgcga agtataacca aagaatttag cctcttcgcg cagcggagcg cgcaaacgct
     1801 ctgccagtaa gtcaacgaac caggcaccag cattatgtcg cgttgcggcg tattcagcac
     1861 cggggttcgc caggccgaca atcaatttaa tcgtcacgtt tttttgtcct gagtgtgtac
     1921 ataactggcg cgtagtttac tggttgcgac cccgcttgac aaaaaactgc gtatcaaatg
     1981 cagataacgt aataattgcc tgagtgggct attagaaagt caaggtgttc aggcgtttat
     2041 ttgtaaagtt ttgttgaaat aagggttgta attgtgatca cgcccgcaca taacccacag
     2101 ggtgttgtct atactttaca cataaggaag aggggtattc cctgttacaa cccagaaagt
     2161 tccggaggtg acatatgaaa cgcaaaaacg cttcgttact cggtaacgtg ctcatggggt
     2221 tgggtctggt ggtaatggtg gtcggcgtgg ggtattcaat cctcaaccag ttaccacagt
     2281 ttaatatgcc ccagtatttc gcacatggtg cagtgctaag tattttcgtc ggtgccattc
     2341 tctggctggc gggtgcccgt gttggcgggc atgaacaggt gtgcgaccgt tactggtggg
     2401 ttcgccacta tgacaaacgt tgccgccgta gcgataatcg ccgtcatagc taacaaataa
     2461 tgcagtttgc tgaccagtca gtttgcgctg actggtcaat ctcgtactta taaatccgcc
     2521 atcgccgcgc gacgattcgg gaagaacgcg aggcgtcccg agattggttg aatgcctgcg
     2581 cgagccatag tgcgcagtgg ctggaattcc acgttgcaca cgcgcagttc acatccttcg
     2641 ggcagacgct tcacaaaacg ctggaacgca tcaagaccac cagcatcaag taccggaacg
     2701 gcatcccact tcagaatcac aatccgtttg ccttcaagac gtgactccag gtccgtgaac
     2761 aagccttcag cagcagcaaa aaacagcggg ccaataacgc gcagtaccag aacatcgtct
     2821 ggaacatcta cgactaccgg tgccaggcga gtcatacgtg cgatacgacg cataaacagc
     2881 agcgatgcca gcacgatccc cacgctgatg gcaataacca tatcaaacag cacggtcagc
     2941 gacatgcaca gcagcatgac aatgatgtca tctttcggtg catgacgcag caagtcgacc
     3001 actttatgcg cttcactcat gttccacgcc accatcaaca gcagggctgc catagcggaa
     3061 agcggcagcc aggagagcag cggtgccagt accagcaggg caagaataac cagaatagag
     3121 tggatcaccg ctgagatagg ggaagttgcc ccggcacgga cgttagcggc agaacgcgcg
     3181 atggcagctg tagcggtaat accaccaaag aatggagcga taatattccc cagtccctgt
     3241 ccaaccagtt cgctgttcgc cttgtgtttc gtcccggtca taccatccag taccacggcg
     3301 cagagcagag attcgattgc gccgagcatt gccattgaga atgccgcagg cagcagtgtg
     3361 cgaatagaat cccaggttag cgtgaattct gaattaggca gatcccacgg cagcaccagt
     3421 tgcggcagca gttgcggaat accgttaccc tgagaaccat cggccaggac gtagtggaat
     3481 tgcgaaccga tggtagcaac atgtccgccg agcaggttaa caatccccat caccgcgcaa
     3541 ccagccagca aggccggaag gtgaccgggt aaacgaatgc ccagacgcgg ccaaaaaaca
     3601 agaataccta gcgtcacaat gccaatggca gcatcaccca cattaatggt cggcagcgcc
     3661 ataaataatg cgccgacttt ttgtagataa tgttccggga catgggccat ttgcagaccg
     3721 agaaaatctt taatctgcat ggtaccgatg gtgatcccga tacccgaggt gaaacctaag
     3781 gtgacggaaa ccggaatata ctcaatcagg cgaccaaagc gtgccagacc catcagaatc
     3841 aaaaagatcc ccgacagcaa ggccgcaacc agcagtcctg ccagtccaaa ctgttgcgac
     3901 acgggataga taattaccac aaatgccgca gtcggaccgg aaacgctaaa gcgtgaccca
     3961 cccgtcagag caatgacaat ccccgcaaca gctgcggtat ataaaccgta ctggggtgcc
     4021 acaccactac caatagccaa cgccatcgcc agcgggatag caataatccc gacggttatc
     4081 ccggcaatca ggtcacgggt aaaccgtgcg gcagtatatt tttctttcca gcaagcgtcg
     4141 atcagagcgc ggaaaggcat cacatgtgag gaaaatattt tgttcacaat aatgtttcat
     4201 ccgtgagcgc atcatctgtc aactaaatgg caggtgaagg aggcataggt catacaaatg
     4261 gatattacag acaaaaaaac ccgccgcagc gggtctttga gccgggttcg attagtgttc
     4321 gaacatggca gagatcgatt cttcgttgct gatacgacga atcgcttcgg ccagcatacc
     4381 tgacagggtc agagtacgca cgttcggcag tgatttgatt tcatcgctca gcggaatggt
     4441 atcgcagaca acgacttcat caattacaga gttacgcagg ttgttcgccg cgttgccaga
     4501 gaagatcggg tgagtcgcgt acgcaaatac acgtttagca ccacgttctt tcagagcttc
     4561 agcagcttta cacagcgtac cgccagtgtc gatcatatca tcgaccagta cgcagtcacg
     4621 acctgcaacg tcaccgatga tatgcatcac ctgggaaacg ttcgcacgcg gacgacgttt
     4681 gtcgatgatt gccatatcgg tatcgttcag cagcttagcg atagcgcggg cacgcacaac
     4741 gccgccgatg tccggagaaa ccacaattgg gttatccaga ttcagctgca gcatgtcttc
     4801 cagcaggatc gggctaccaa atacgttatc aaccggaacg tcgaagaaac cctgaatctg
     4861 ttcagcgtgc agatccactg tcagcacacg gtcaacaccg acgctggaga ggaagtctgc
     4921 aaccactttc gcagtgattg gtacacgagc ggaacggacg cgacggtcct ggcgcgcata
     4981 gccaaagtag gggataacag cggtgatacg acctgcggaa gcacgacgca gggcatcaac
     5041 cataacgact aattccatca ggttgtcgtt agtaggggca caagtggact ggatgatgaa
     5101 aatatcacca ccgcgtacat tttcattaat ttgtacgctg acttcgccat cgctaaagcg
     5161 acctacagcg gcgtcgccga gtgaagtgta caggcggttg gcaatacgtt gtgctagttc
     5221 cggggtggcg ttaccagcaa aaagcttcat atcaggcacg agaagaacct caggcatgcg
     5281 tccattggtg gaaagaatct gccgaaaact gtgcgggcca ggcatgatcc tttccaggca
     5341 gtgtattaaa gagcgcgatg caacgtctgg aacaaggtga cgttgtcacc gaaactcagc
     5401 ttgcccggct taaagcatgg ctctgtgcaa tggggaaaga ttaacgcctt tcgccacaaa
     5461 gccattgagc cattccgggg cttgctctag cacctggcgg gcttcagact ctgtatcaaa
     5521 ttcagcaaag acacaggccc ctgtcccagt caggcgcgac ggggcgtatt ctaacagcca
     5581 ggaaagcacc gcatcaacct cgcgaaaacg ttttcttgcg ataacctcgc aatcattgct
     5641 gaattcacat tttagcaacg tttctattga cctttttggc gtattgcgcg ggagttcagg
     5701 atctttaaaa atcaccggag tcggaatact tacaccaggg tgcgccacca gataccactt
     5761 ctctggcgga tccaccggcg ttagtatttc accaacgcct tcggcaaacg cggcatgccc
     5821 ccgaacaaag acaggaacat ctgcgcccag cgtcagcccc atttccgcca gctcatccat
     5881 gcttagcccg cattgccaga gatgatttaa tgccaccagg accgtcgcgg cattggatga
     5941 accaccgccg agaccgccgc ccatcggcaa acgcttgtca atgctgatat tcgcaccgct
     6001 tcccgtcgga agacgcccgc tgtctgccgc agttttcatc aacaatcgcg ctgcgcgaac
     6061 gatcaggtta tcttcatgtt ccacgccttc aacgggcgtt aacagacgaa tatccccatc
     6121 gtcacgaagc tcaatgctga tggtgtcgcc gtaatcaaga aactgaaaca gcgtttgcag
     6181 cgtgtggtaa ccatccgcac gctgaccggt aatgtataaa aacagattaa gttttgccgg
     6241 agagggccac tgtgtccgca ttatttcact atccagttat ccatttttaa cttgatgcgt
     6301 tgaccaccgt cggtgagttc catattggct ggcatcgcag gatgcgtttt ggtgtcataa
     6361 ccaccataaa caaccttcca gtttttgcca ttctggctgt aggtaatttc gctcaggcgg
     6421 tactggtcgt ccagtttgta gtcggttgca tcacccggta aacctaaaat ccactggcgc
     6481 aagctgttga gcggaattgg cattccggtc aatttgccaa tcatctcttc ggcgtcatcg
     6541 gcggtataac gctgaccttt attgtcgact aactgcacgt tacccggttg agcattcagc
     6601 tccagttccg tgctgcccaa tgggttagtg agcagcagac ggtagcgatc ctggccggtt
     6661 tgctgccaga aaaagcgggc gtacactttt tgttggtcag aaatataagc gaacgcgccg
     6721 cgagtctgat actgattaag attgcgcacg tcttgctgat gctgacgcca ttgtggcgaa
     6781 tccgggcttt tgccaggacc tttgggcgtg gtaacggaac aggcagtgag cacaagagca
     6841 gccagcggta gcaggcggat aagacgaaaa tcgggcaggg gcatagtgat gacaagtcct
     6901 tgagatacgt tgcagttata acccttaatg ctagcgttac cgtccgctat cgtctatgtt
     6961 caagttgtct taattgccag aatctaacgg ctttcggcaa ttactccaaa agggggcgct
     7021 ctcttttatt gatcttacgc atcctgtatg atgcaagcag actaactcta tcaacgttgg
     7081 tattatttcc cgcagacatg acccttttag cactcggtat caaccataaa acggcacctg
     7141 tatcgctgcg agaacgtgta tcgttttcgc cggataagct cgatcaggcg cttgacagcc
     7201 tgcttgcgca gccgatggtg cagggcggcg tggtgctgtc gacgtgcaac cgcacggaac
     7261 tttatcttag cgttgaagag caggataacc tgcaagaggc gttaatccgc tggctttgcg
     7321 attatcacaa tcttaatgaa gaagatctgc gtaaaagcct ctactggcat caggataacg
     7381 acgcggttag ccatttaatg cgtgttgcca gcggcctgga ttcactggtt cttggggagc
     7441 cgcagatcct cggtcaggtt aaaaaagcgt ttgccgattc gcaaaaaggt catatgaagg
     7501 ccagcgaact ggaacgcatg ttccagaaat ctttctctgt agcgaaacgc gttcgcactg
     7561 aaacagatat cggtgccagt gctgtgtctg tcgcttttgc ggcttgtacg ctggcgcggc
     7621 agatctttga atcgctctct acggtcacag tgttgctggt aggcgcgggc gaaaccatcg
     7681 agctggtagc gcgtcatctg cgcgaacata aagtacagaa gatgattatc gccaaccgca
     7741 ctcgcgaacg tgcccaaatt ctggcagatg aagttggcgc ggaagtgatt gccctgagtg
     7801 agatcgacga acgtctgcgc gaagccgata tcatcatcag ttccaccgcc agcccgttac
     7861 cgattatcgg gaaaggcatg gtggagcgcg cattaaaaag tcgtcgtaac caaccaatgc
     7921 tgttggtgga tattgccgtt ccgcgcgatg ttgagccgga agttggcaaa ctggcgaatg
     7981 cttatcttta tagtgtggac gatctgcaaa gcatcatttc gcacaacctg gcgcagcgta
     8041 aagccgcagc ggttgaggcg gaaactattg tcgctcagga aaccagcgaa tttatggcgt
     8101 ggctgcgagc acaaagcgcc agcgaaacca ttcgcgagta tcgcagccag gcagagcacg
     8161 ttcgcgatga gttaaccgcc aaagcgttag cggcccttga gcagggcggc gacgcgcaag
     8221 ccattatgca ggatctggca tggaaactga ctaaccgctt gatccatgcg ccaacgaaat
     8281 cacttcaaca ggccgcccgt gacggggata acgaacgcct gaatattctg cgcgacagcc
     8341 tcgggctgga gtagcagtac atcattttct ttttttacag ggtgcattta cgcctatgaa
     8401 gccttctatc gttgccaaac tggaagccct gcatgaacgc catgaagaag ttcaggcgtt
     8461 gctgggtgac gcgcaaacta tcgccgacca ggaacgtttt cgcgcattat cacgcgaata
     8521 tgcgcagtta agtgatgttt cgcgctgttt taccgactgg caacaggttc aggaagatat
     8581 cgaaaccgca cagatgatgc tcgatgatcc tgaaatgcgt gagatggcgc aggatgaact
     8641 gcgcaaagct aaagaaaaaa gcgagcaact ggaacagcaa ttacaggttc tgttactgcc
     8701 aaaagatcct gatgacgaac gtaacgcctt cctcgaagtc cgagccggaa ccggcggcga
     8761 cgaagcggcg ctgttcgcag gcgatctgtt ccgtatgtac agccgttacg ccgaagcccg
     8821 ccgctggcgg gtagaaatca tgagcgccag cgagggtgaa catggtggtt ataaagagat
     8881 catcgccaaa attagcggtg atggtgtgta tggtcgtctg aaatttgaat ctggcggtca
     8941 tcgcgtgcag cgtgttcctg ctacggaatc gcagggtcgt attcatactt ctgcttgtac
     9001 cgttgcggta atgccagaac tgcctgacgc agaactgccg gacatcaacc cagcagattt
     9061 acgcattgat actttccgct cgtcaggggc gggtggtcag cacgttaaca ccaccgattc
     9121 ggcaattcgt attactcact tgccgaccgg gattgttgtt gaatgtcagg atgaacgttc
     9181 acaacataaa aacaaagcga aggcgctttc agtgctcggt gctcgcatcc acgctgctga
     9241 aatggcaaaa cgccaacagg ccgaagcgtc tacccgtcgt aacctgctgg ggagtggcga
     9301 tcgcagcgac cgtaaccgta cttacaattt cccgcagggg cgcgttaccg atcaccgcat
     9361 caacctgacg ctctaccgcc tggatgaagt gatggaaggt aagctggata tgctgattga
     9421 accgattatc caggaacatc aggccgacca actggcggcg ttgtccgagc aggaataatg
     9481 gaatatcaac actggttacg tgaagcaata agccaacttc aggcgagcga aagcccgcgg
     9541 cgtgatgctg aaatcctgct ggagcatgtt accggcagag ggcgtacttt tattctcgcc
     9601 tttggtgaaa cgcagctgac tgacgaacaa tgtcagcaac ttgatgcgct actgacacgt
     9661 cgtcgcgatg gtgaacccat tgctcattta accggggggc gagaattctg gtcgttgccg
     9721 ttatttgttt cgccagcgac cttaattccg cgcccggata cggagtgtct ggtggagcag
     9781 gcactggcgc ggttgcctga acaaccttgc cgtattcttg atctcgggac gggtaccggg
     9841 gcgattgcgc ttgcgctggc tagcgagcgc ccggactgcg aaattatcgc tgtagatcgt
     9901 atgcctgatg ctgtctccct ggcacaacgt aatgcccagc atctggcgat caaaaatatc
     9961 cacattctgc aaagcgactg gtttagcgcg ctagccgggc agcagtttgc gatgattgtc
    10021 agcaatccgc cgtatattga cgagcaggac ccacatcttc aacaaggcga tgtccgcttt
    10081 gagccgctca ctgcgctggt tgcggcagac agtggaatgg cagacatcgt gcatatcatc
    10141 gaacagtcgc gtaacgcgct ggtatccggc ggctttctgc ttctggaaca tggctggcag
    10201 cagggcgaag cggtgcgaca agcatttatc ctcgcggggt atcatgacgt cgaaacctgc
    10261 cgtgactatg gtgataacga gcgcgtaacg ctcggccgct attatcaatg acaagttttt
    10321 ctacactgct tagtgttcat cttattagta tcgcgctttc tgttgggcta ttaaccttac
    10381 gtttctggct acgttatcag aagcatccac aggcatttgc tcgctggacg cgcattgtgc
    10441 cgccggttgt cgatacggtg ttattgttaa gcggcattgc gttgatggct aaagcgcaca
    10501 tcctgccatt ttccgggcag gcacagtggc tgactgaaaa gctgtttgga gttatcattt
    10561 atatcgtttt gggttttatt gcactcgatt atcgtcgtat gcacagtcag caggcgcgca
    10621 ttattgcctt cccgctggcg ttggtggtgc tgtacatcat cattaaactc gccaccacaa
    10681 aagtaccgtt actggggtaa gtcatgagat cgttagctga tttcgaattt aataaagcgc
    10741 cattgtgcga aggcatgatc ctggcttgcg aagcaatccg ccgcgatttt ccctcgcaag
    10801 atgtttacga cgaactggag cgtctcgtta gtctggcgaa ggaagaaatc agccagcttc
    10861 tgcctttaga agagcagctg gaaaaactga tcgcgctgtt ttacggcgac tggggattta
    10921 aagcctcacg cggcgtttat cgtctttccg atgcattatg gctggaccag gtgttaaaga
    10981 atcgacaggg cagtgcggta tcattaggtg cggttttatt atgggtcgcg aatcgtctcg
    11041 atttgccgct gctgccggtg attttcccta cgcagctgat attgcgcatt gaatgtccgg
    11101 atggcgaaat ttggctgatt aatcctttta acggtgaatc gttaagcgaa catatgctgg
    11161 acgtatggtt aaagggaaat atcagcccgt cggcggaact gttttatgaa gaccttgatg
    11221 aagctgataa cattgaggta atccgcaaat tgctggatac actcaaagcc tcgttgatgg
    11281 aagaaaatca gatggagctg gcgttacgca ccagcgaagc tttattacaa ttcaaccctg
    11341 aagatcccta tgaaattcgc gatcgcgggt tgatttatgc gcaactggat tgcgaacacg
    11401 ttgcgttgaa cgatttaagt tatttcgttg aacagtgtcc ggaagacccg atcagcgaaa
    11461 tgatccgtgc gcaaataaat aacatcgcgc ataaacatat tgtgctgcat taattaatcg
    11521 acattttact caagattaag gcgatcctat gaaacaaaaa gtggttagca ttggcgacat
    11581 caacgtagca aatgacctgc cgttcgtact gtttggcggt atgaacgtgc tggaatctcg
    11641 cgatctggcg atgcgcattt gcgagcacta cgtaactgtg acccagaaac tgggtatccc
    11701 ttacgtgttc aaagcctctt ttgacaaagc caaccgctcc tccatccact cttatcgtgg
    11761 accgggcctg gaagaaggga tgaaaatctt ccaagagttg aagcagactt ttggcgtgaa
    11821 aattatcacc gacgttcacg aaccaagtca ggcacagccc gttgctgatg tcgtggatgt
    11881 gattcagttg ccggcgtttc ttgctcgcca gactgacctg gttgaagcca tggcgaaaac
    11941 cggtgcggta attaacgtca agaaaccaca gtttgtcagc ccgggacaga tgggtaatat
    12001 cgttgataaa ttcaaagaag gcggcaacga aaaagtgatt ctttgcgatc gtggtgctaa
    12061 cttcggctat gacaacctgg ttgtcgatat gctgggcttc agcattatga agaaagtgtc
    12121 tggtaactcg ccggtgattt tcgacgtgac ccacgcactg caatgccgcg atccgtttgg
    12181 cgcagcttcc ggtggtcgtc gtgctcaggt ggctgagctg gcacgagccg gtatggcggt
    12241 aggtctggcg gggctgttta ttgaagcgca tccggatccg gaacatgcga aatgtgatgg
    12301 tccatccgcg ctgccgctgg ctaaactgga accgttcctc aagcagatga aagcgattga
    12361 tgatctggtg aaaggtttcg aagaactgga taccagcaag taatcttttt tgcttgaaaa
    12421 ataaagtctt agcgttctgc gttaagactt ttttcatggg tgccagatac aaaaaaggcc
    12481 gcaggctgtt acccctgcgg ccggtttcgg gcgcatattg ccatcacggc agcctgacgc
    12541 ccgttttcac cttacttccg gttacgccac cagccgacaa tcgctgcggt aataattccc
    12601 gccaggatcg gtgctgccag gtcgtgccag aaaatcatgg caaactgcgc gagcgtcata
    12661 tagccgcctt gttgtaatga taacattttg cggctattct tgaattgttc tggttcaaga
    12721 ttagcccccg ttctattgtc aggttaaacc tctcaacgtg cgggggtttt ctctttccag
    12781 caaccaatgc caccagggat aaagcccccg caacattgcg cctcaccgga taacgccggc
    12841 ttgatgtgga tactacgtct caattcatct tcacttcatc cctgaaatgt ttgcaatgaa
    12901 gagtgcattc cggtttttca acagctgtta cagtcgtttc atgagtgctc tggatgatgc
    12961 ttccagctcg ggttgccaat atttacttgt ggaagagata aagacaaaaa tggccgcagg
    13021 ctgttacccc tgcggccggt ttcgggcgca tattgccatc acggcagcct gacgcccgtt
    13081 ttcaccttac ttccggttat gccaccagcc gacaatcgct gcggtaataa tccccgccag
    13141 gatcggtgct gccaggtcgt gccagaaaat catggcaaac ttcgcgagcg tcatatagcc
    13201 gccttgttgt aatgacaaca ttttgcggct attcttgaat tgttgatggt tcaagattag
    13261 cccccgtt
//
LOCUS       DAJVUY010000114        13225 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.114, whole genome shotgun sequence.
ACCESSION   DAJVUY010000114 DAJVUY010000000
VERSION     DAJVUY010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13225
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.114"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            155..502
                     /locus_tag="OQQ72_002943"
     CDS             155..502
                     /locus_tag="OQQ72_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HCS2012597.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            492..854
                     /locus_tag="OQQ72_002944"
     CDS             492..854
                     /locus_tag="OQQ72_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HCS2012598.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            851..1348
                     /locus_tag="OQQ72_002945"
     CDS             851..1348
                     /locus_tag="OQQ72_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCS2012599.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1356..2540)
                     /gene="emrD"
                     /locus_tag="OQQ72_002946"
     CDS             complement(1356..2540)
                     /gene="emrD"
                     /locus_tag="OQQ72_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HCS2012600.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFLFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPLATLMSHQGQ
                     PV"
     gene            complement(2959..3048)
                     /gene="tisB"
                     /locus_tag="OQQ72_002947"
     CDS             complement(2959..3048)
                     /gene="tisB"
                     /locus_tag="OQQ72_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HCS2012601.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            3613..3711
                     /gene="ivbL"
                     /locus_tag="OQQ72_002948"
     CDS             3613..3711
                     /gene="ivbL"
                     /locus_tag="OQQ72_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HCS2012602.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            3817..5505
                     /gene="ilvB"
                     /locus_tag="OQQ72_002949"
     CDS             3817..5505
                     /gene="ilvB"
                     /locus_tag="OQQ72_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HCS2012603.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5509..5799
                     /gene="ilvN"
                     /locus_tag="OQQ72_002950"
     CDS             5509..5799
                     /gene="ilvN"
                     /locus_tag="OQQ72_002950"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS2012604.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            5873..6463
                     /gene="uhpA"
                     /locus_tag="OQQ72_002951"
     CDS             5873..6463
                     /gene="uhpA"
                     /locus_tag="OQQ72_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HCS2012605.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6463..7965
                     /gene="uhpB"
                     /locus_tag="OQQ72_002952"
     CDS             6463..7965
                     /gene="uhpB"
                     /locus_tag="OQQ72_002952"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HCS2012606.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            7975..9294
                     /gene="uhpC"
                     /locus_tag="OQQ72_002953"
     CDS             7975..9294
                     /gene="uhpC"
                     /locus_tag="OQQ72_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HCS2012607.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAAALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9432..10823
                     /gene="uhpT"
                     /locus_tag="OQQ72_002954"
     CDS             9432..10823
                     /gene="uhpT"
                     /locus_tag="OQQ72_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HCS2012608.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(10868..12634)
                     /gene="adeD"
                     /locus_tag="OQQ72_002955"
     CDS             complement(10868..12634)
                     /gene="adeD"
                     /locus_tag="OQQ72_002955"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HCS2012609.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLDL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFVFTTLEVTE"
     gene            12809..>13225
                     /gene="adeQ"
                     /locus_tag="OQQ72_002956"
                     /gene_synonym="yicO"
     CDS             12809..>13225
                     /gene="adeQ"
                     /locus_tag="OQQ72_002956"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS2012610.1"
                     /translation="MNNDNTDYVSNESGMLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMIS"
BASE COUNT         2942 a         3441 c         3679 g         3163 t
ORIGIN      
        1 cgtccttcag ggcgtggagg atgtcaattt gcgctatgat acccatctga cctccttgta
       61 gcggatggca aaagcatatc aggaaacggg cggacgaaat tcttaaaaaa aaccgctaaa
      121 gatagagcgt tagtgaaatt gcaaaggagc aacaatgaaa atttcccgcc ttggagaagc
      181 gcccgattac cgcttctcgc tggctaatga gcgtactttt ctggcgtgga tccgtaccgc
      241 actaggattt ctggcggcgg gggttgggct tgatcaactt gcgccagatt tcgccacgcc
      301 cgtcattcgt gaactgctgg cgttgttgtt gtgtctgttt tccggcgggt tagcaatgta
      361 tggctacctg cgctggttac gcaatgaaaa agcgatgcgt ctgaaagagg acctgcccta
      421 caccaacagc ttattaatca ttagcttaat attgatggtc gtggcggtga tcgttatggg
      481 actggtgttg tatgccggat agccgcaaag ccagacgcat tgccgaccca ggactgcagc
      541 cggagcgcac atcactggcg tggtttcgta ccatgctggg ctacggcgcg ttgatggcgt
      601 tggctatcaa acacaactgg caccaggcgg gcatgttatt ctggatttcg attggcattc
      661 tcgccatcgt ggcgctgatc ctctggcact acacccgtaa tcgcaattta atggatgtca
      721 cgaatagcga tttttcccaa tttcacgtag tccgtgacaa atttttgatc tccctcgcgg
      781 tgttatctct cgcaatactg tttgctgtaa cgcatataca tcaacttatc gtatttattg
      841 agagagtcgc atgacaggaa gtcaggtcat tgatgctgaa gaggacaggc ataaactggt
      901 tgtagagtac aaggatgctc tgcaacctgc cgatttttat cacaatttca aacagcgggg
      961 catccgctcc gtacagctca ttccctatct tgaatttgat gaccggggcg atctgacggc
     1021 cgcttcggtg acagcagagc tgtgggggaa atttttaatt gccctgttcg agtgttgggt
     1081 gcgggcagat atcagtcgta tctcgattga gctttttgac gccaccttac aaaaatggtg
     1141 tggcggcgaa aacccgcaac cgcgccgtga ctgccaggcg tgcgactggc atcgcctgtg
     1201 cccgcacgct cggcaggaga cgccagacag cgtgctttgt gcgggctatc aggcgtttta
     1261 ttcttactcc gcaccgcata tgcgggtgat gcgtgatctg ataaagcagc atcgttctcc
     1321 catggagctg atgacgatgc tgcggtgacg tgcgcttaaa cgggctgccc ctgatgcgac
     1381 atcagcgtcg ccagcggcag ccagcacagc acgatcaaca atcccattaa ggtcatcaat
     1441 aaccccaggc taccctgacc ggtttgcggc aacatcgcag agagcgacgc cagcacgccg
     1501 gaaccaatgt tttgcagacc gccgaccagc gcgccagccg tgcccgccag gaagaggaac
     1561 ggctccatcg cgccgctggt cgccagcgga aacagcatcc cggcaccgaa aaagaacagc
     1621 gcggcgggaa cgagcagcgt ccagacattc atcacgccaa accagtcggg gatccacatc
     1681 agcaagccag ccagcaggca gcagataacc gactgccaca ttaacgtgga gaagcgttta
     1741 ttgggacgtc cggcaaacca tgcgccaaaa aacgctgccg gaatcggcag aataaacaaa
     1801 atactgaccg tcatactgct cagccctaac accgcgccca tcagcacgcc ggagcaggct
     1861 tcaaaggcgg caatcccggc cagaccgcca atcagcatca gcaaataaca gttaaaaccg
     1921 ctgttaccga aaagcgtttt ataactggta agcaggcgcg tgcgcggtgc atcgaccgga
     1981 cgcgtttccg gcatccagcg ggccatactg aaggtcacac caacacaaag aaccaacaaa
     2041 aagagataac aggcgcgcca gttccacatc gtatccagca gaccgccgat tagcggtgcg
     2101 agcaacggac tgacgagaat ccccatgttt aacaggctgt tagcatggcg caactgtgtc
     2161 cgttcatata aatctcgcgg caaagtacgc gccattacgc cgccaacgcc ggtgcccatc
     2221 ccctgcatcg cgctggcggc aatcaatacc gtcaaactgg aggtcgtgac cgcgaccagc
     2281 gttgccagca taaaaatgga cattccgacg aggatcaccg gtcggcgacc cacacggtcg
     2341 gaaatcgggc cataaaacag ctgtgagaca ccgtaagtca gcagataagc gcccattacg
     2401 ctctgcaccg ccccttcacg gacgttgaga tcgcgcgcca tatcggcaat agctggaata
     2461 taaatggttt gcgccatctg accgacggcc acgagtaata ccaacatcaa taacaaattg
     2521 acgtttcttt gccttttcat tatcacggat gcttttataa aaataattag aataagtcac
     2581 tacgcattcc cataaatgcg ggagaggaat ctatcacatt gatgaatgtt agccagatat
     2641 acgccaggaa tggggaattg tttagcggca gaatatgtaa acaaaagcgg caataaatgt
     2701 tgccgggagg gattacgtgc gaactgtaac cctctcccca aaggggcgag ggggaaacca
     2761 ccgttccctt tcagaaaatg agctaaacat tgcacgggac ggtcccctcg cccctttggg
     2821 gagagggcta gggtgagggg cacaggcagc gcaggtgcaa acattctgct ggtagaagaa
     2881 gcccccaact ccaacccgca cgctaaatat aaaaggggag cggttacccg ctcccctttg
     2941 gtgcgacttg aatctgaatt acttcaggta tttcagaaca gcatcaagca gttgcagtgc
     3001 tgcaacaatg agtttgagga taagaatggc gatatccacc aggctcatac gcgtctcctg
     3061 tggttcagga gcactgccag ctgacgtacc tttccgctgc ctgttgccag ctgttgtgca
     3121 cgcggtatct caaggagaaa cgttgtgctt gttgacataa cacagtgtgc tcacgcgggg
     3181 ttaaggcgct gacggcacca cccgtttcag ccaggactta gtgcgccggg taacgatgcg
     3241 gcccccgcat aatacattgc gtacagtgat attatagaag tttactgtat aaataaacag
     3301 tgatatttgg acaaaacgca aactgtgatc gatactcaac tatgccctaa atacgtcaaa
     3361 attcgtgccg aaattgcgcg ttctgcgcgg aacacgtata ctttcagtgt tgacataata
     3421 cagtgtgctt tgcggttacc agctgcaggc ggctgatgaa acctcgctcc ggcggggttt
     3481 tttgttacct gcaattcagt acaaaacgtg atcagcccct caattttccc ttgctgaaaa
     3541 attttccatt gtctcccctg taaagctgtg cttgtataaa tattgttaaa cacaaaacca
     3601 acaaggtccc caatgactac ttccatgttc aacgcaaaac tactaccaac tgcgctatcc
     3661 gccgcagtgg tcgtcgtgcg tgtggtggtg gtcgtcggca atgcgccgta gggactggaa
     3721 caacacacga ttccaaaacc ccgccggcgc aaaccgggcg gggtttttcg tttaagcacc
     3781 tcccggaaag tcggcccaga agaaaaggac tggagcatgg caagttcggg cacaacatcg
     3841 acgcgtaagc gctttaccgg cgcagaattt atcgttcatt tcctggaaca gcagggcatt
     3901 aagattgtga cgggcattcc gggcggttct atcctgcctg tttacgatgc cttaagccaa
     3961 agcacgcaaa tccgccatat tctggcccgt catgaacagg gcgcgggatt tatcgctcag
     4021 gggatggcgc gcaccgacgg taaaccggcg gtctgtatgg cctgtagcgg accgggtgcg
     4081 actaacctgg tgaccgccat tgccgatgcg cggctggact ccatcccgct gatttgcatc
     4141 accggtcagg ttcccgcctc gatgatcggc accgacgcct tccaggaagt ggacacctac
     4201 ggcatctcta tccccatcac caaacacaac tatctggtca gacatatcga agaactcccg
     4261 caggtcatga gcgatgcctt ccgcattgcg caatcaggcc gcccaggccc ggtgtggata
     4321 gacattccta aggatgtgca aacggcagtt tttgagattg aaacacagcc cgctatggca
     4381 gaaaaagccg ccgcccccgc ctttagtgaa gaaagcattc gtgacgcagc ggcgatgatt
     4441 aacgctgcca aacgcccggt gctttatctg ggcggcggtg tgatcaatgc gcccgcacgg
     4501 gtgcgtgaac tggcggagaa agcgcaactg cctaccacca tgactttaat ggcgctgggc
     4561 atgttgccaa aagcgcatcc gttgtcgctg ggtatgctgg ggatgcacgg cgtgcgcagc
     4621 accaactata ttttgcagga ggcggatttg ttgatagtgc tcggtgcgcg ttttgatgac
     4681 cgggcgattg gcaaaaccga gcagttctgt ccgaatgcca aaattattca tgtcgatatc
     4741 gatcgcgcag agctgggtaa aatcaagcag ccgcatgtgg cgattcaggc ggatgttgat
     4801 gacgtgctgg cgcaattgat cccgcaggtg gaagcgcaac cgcgtgcaga gtggcaccag
     4861 ttggtagcgg atttgcagcg cgaattcccg tgtccaatcc cgaaagcgtg cgatccatta
     4921 agccattacg gcctgatcaa cgccgttgcc gcctgtgtcg atgacaatgc gattatcacc
     4981 accgatgtgg gtcagcatca gatgtggacc gcgcaagctt atccgctcaa tcgcccacgc
     5041 cagtggctga cctccggtgg gctgggcacg atgggttttg gcctgcctgc ggcgattggc
     5101 gcggcgctgg cgaacccgga tcgcaaagtg ttgtgtttct ccggcgacgg cagcctgatg
     5161 atgaatattc aggagatggc gaccgccagt gaaaatcagc tggatgtcaa aatcattctg
     5221 atgaacaacg aagcgctggg gctggtgcat cagcaacaga gtctgttcta cgagcaaggc
     5281 gtttttgccg ccacctatcc gggcaaaatc aactttatgc agattgccgc cggattcggc
     5341 ctcgaaacct gtgatttgaa taacgaagcc gatccgcagg ctgcattgca ggaaatcatc
     5401 aatcgccctg gcccggcgct gatccatgtg cgcattgatg ccgaagaaaa agtttacccg
     5461 atggtgccgc caggtgcggc gaatactgaa atggtggggg aataagccat gcaaaacaca
     5521 actcataaca acgtaattct ggagctcacc gttcgcaacc atccgggcgt aatgacccac
     5581 gtttgtggcc tttttgcccg ccgcgctttt aacgttgaag gcattctttg tctgccgatt
     5641 caggacagcg acaaaagcca tatctggcta ctggtcaatg acgaccagcg tctggagcag
     5701 atgataagcc aaatcgataa gctggaagat gttgtgaaag tgcagcgtaa tcagtccgat
     5761 ccgacgatgt ttaacaagat cgcggtgttt tttcagtaac cgctcaaggc ttgaacaaca
     5821 tcgcgcttat cgttaaggta agcgcgtttt ttttacccgc caggacaaga ccatgatcac
     5881 cgttgccctt atagacgatc acctcatcgt ccgctccggc tttgcgcagc tgctggggct
     5941 ggaacctgat ttgcaggtag ttgccgagtt tggttcgggg cgcgaggcgc tggcggggct
     6001 gccggggcgc ggtgtgcagg tgtgtatttg cgatatctcc atgcccgata tctccggtct
     6061 ggagctgcta agccagctgc cgaaaggtat ggcgacgatt atgctctccg ttcacgacag
     6121 tcctgcgctg gttgagcagg cgcttaacgc gggggcacgc ggctttcttt ccaaacgctg
     6181 tagcccggat gaactcattg ctgcggtgca tacggttgcc acgggcggct gttatctgac
     6241 gccggatatt gccattaaac tggcatccgg tcgtcaggac ccgctaacca aacgtgaacg
     6301 ccaggtggcg gaaaaactgg cgcaaggaat ggcggtgaaa gagattgccg ccgaactggg
     6361 cttgtcaccg aaaacggtac acgtccatcg cgccaatctg atggaaaaac tgggcgtcag
     6421 taacgacgta gagctggcgc gccgcatgtt tgatggctgg tgatgaagac gttgttctcc
     6481 cgcttaatta ccgttattgc ctgctttttt atcttctctg ccgcatggtt ttgcctgtgg
     6541 agtatcagcc tgcatctggt tgagcgccct gatatggcgg tgctgttatt tccgtttggt
     6601 ctgcgtctgg ggctaatgct gcaatgcccg cgcggatact ggccggtgct gctgggcgcg
     6661 gagtggctgc tgatttactg gctaacgcag gcggtcggtt taacccattt tccgttattg
     6721 atgatcggta gtttactgac gttactgccc gtagcgctga tctcgcgcta tcgccatcag
     6781 cgtgactggc gcaccttgct gttacagggg gcggcgttaa cggcggcggc gttgttgcag
     6841 tcgctgccct ggctttggca cggcaaagag tcgtggaatg cgctgttgct gactttaact
     6901 ggcggcctga cgctggcccc gatatgtctg gtgttctggc actatctcgc caataacacc
     6961 tggctgccgc tcggcccgtc actggtttct cagccaatca actggcgcgg gcgacatctg
     7021 gtctggtact tgctgctgtt tgttatcagt ctctggctcc agttgggatt gccggacgaa
     7081 ctgtcgcgct ttacgccatt ctgtctggcg ctgccgatta tcgcgctggc ctggcactat
     7141 ggttggcaag gggcgctgat tgcgacgttg atgaacgcca tcgcgctgat cgccagtcaa
     7201 acctggcgcg atcatccggt ggatttattg ctctcgctgc tggtgcaaag tctgacaggg
     7261 ttgttgcttg gcgctggcat ccagcggttg cgtgaactta accagtcgct gcaaaaggaa
     7321 ctggcgcgca atcagcatct ggctgaacgg ttgctggaaa ccgaagagag cgtgcgccgt
     7381 gatgtggcgc gtgagctgca tgatgatatc ggtcagacca tcactgctat tcgtactcag
     7441 gcgggcattg ttcagcggct ggcggcagat aacgccagcg tgaagcagag cgggcagctc
     7501 atcgaacaac tatcgctggg cgtttacgac gcggtgcgcc gtttgttggg tcggttacgt
     7561 ccgcgccagt tggatgatct caccctggag caggccatcc gctcactgat gcgggaaatg
     7621 gagctggaag ggcgcggtat tgtcagccat ctcgaatggc gaatcgatga atcagcgtta
     7681 agcgaaaacc agcgcgtaac gctgtttcgt gtctgccagg aagggctgaa caacattgtg
     7741 aaacatgctg atgccagcgc ggtcaccctg caaggctggc agcaggatga acggttgatg
     7801 ctggttattg aagacgatgg cagcggtttg ccgccgggtt ccgggcaaca aggttttggc
     7861 ctcaccggaa tgcgcgagcg cgtaacggcg ctgggtggca cattacacat ttcctgtctg
     7921 cacggcacgc gtgtcagcgt ttctctacct caacgctatg tctaaggttt gatgatgttg
     7981 ccgtttctga aagcgcctgc cgatgcgcca ttaatgactg ataaatatga aattgatgcc
     8041 cgctatcgct actggcgtcg gcatattctg ctgaccatct ggctgggtta cgcgctgttt
     8101 tacttcacgc ggaaaagttt taacgccgcc gtaccagaaa tccttgctaa cggcgtgctc
     8161 agccgtagcg atatcggcct gttagcgacc ctgttttaca ttacctatgg cgtgtcgaag
     8221 tttgtctccg gcattgtcag cgatcgctca aatgcccgtt attttatggg gatagggctt
     8281 atcgccacgg gcattatcaa cattctgttt ggcttctcga cgtcgctatg ggcgtttgca
     8341 gtactctggg tgctgaacgc ctttttccag ggctggggtt caccggtgtg tgcgcgtctg
     8401 ttaacggcct ggtattcacg taccgagcgc ggtggttggt gggcattatg gaacacggcg
     8461 cataacgtcg gcggcgcact cattcccatt gtgatggcag cggctgcact acattacggc
     8521 tggcgtgccg ggatgatgat tgctggttgt atggcgatcg tcgtgggaat ttttctctgc
     8581 tggcggctgc gcgatcgccc gcaggcgtta ggtttaccgg cggtcggtga atggcgacac
     8641 gacgcgctgg agatagctca acaacaagaa ggggcagggc tgacgcgtaa agagatcctc
     8701 accaaatatg tgttgctgaa tccgtatatc tggctgcttt cgttttgcta tgtgctggtc
     8761 tatgtggtcc gggcggcgat caacgactgg ggcaatttgt atatgtccga gacgctgggc
     8821 gtcgatctgg tcacggcgaa tacggcagtg acgatgtttg aactgggtgg atttatcggt
     8881 gcgctggtag cgggttgggg ctcggacaaa ttgtttaacg gcaaccgagg gccgatgaat
     8941 ttgattttcg ccgccggaat tttgctttca gtcggctccc tgtggctgat gccatttgcc
     9001 agctacgtga tgcaggcaac ctgcttcttc accattggtt tttttgtctt tggcccacag
     9061 atgttaatcg gtatggcggc ggcagagtgt tcccacaaag aggcggcagg ggcggcgacg
     9121 gggtttgtcg gcttgtttgc ttatctgggg gcgtcgcttg ctggttggcc gctggcgaaa
     9181 gtactcgata cctggcactg gagcggattt tttgtggtta tctctatcgc cgccgggatt
     9241 tccgcactgc tgttactgcc ctttttgaac gcccagacac cgcgcgaagc gtgatgcatc
     9301 tcaccttttc acttcatatc cggcaaaact aagaaatttt ccaggttttg cctggacgct
     9361 atctcaggcc tgatttgctg ctgattttta caatgcatgc ctcacgcagg tattcatttc
     9421 aggagtaacc catgctggct ttcctaaacc aggttcgcaa gccgaccctg gaccttccgc
     9481 tcgaagtgcg gcgcaaaatg tggttcaaac cgttcatgca atcctacctg gtggtcttta
     9541 tcggctacct gacgatgtac ctgattcgca agaactttaa catcgcgcag aacgatatga
     9601 tttcgaccta cgggttgagc atgacgcagc tggggatgat cggcctgggt ttctccatca
     9661 cttatggcgt gggtaaaacg ttggtttcat actacgccga cggcaaaaac accaaacaat
     9721 tcctgccgtt catgctgatc ctgtctgcca tttgtatgct gggcttcagt gccagtatgg
     9781 gcagcggctc ggttagcctg ttcctgatga ttgccttcta cgccttaagc ggctttttcc
     9841 agagtaccgg cggttcgtgc agttactcca ccatcaccaa atggacgccg cgtcgtaaac
     9901 gcgggacatt cctcggtttc tggaatattt ctcacaacct tggcggtgca ggcgcagcag
     9961 gtgtggcgct gttcggggca aattacctgt tcgatggcca tgtcatcggc atgtttatct
    10021 tcccgtcgat tatcgcgctg attgtcggtt ttatcggcct gcgttacggc agcgactccc
    10081 cagaatctta tggcctcggc aaagctgaag aactgttcgg cgaggagatc agcgaagagg
    10141 acaaagagac agaatctacc gatatgacca agtggcagat ctttgttgag tatgtgctga
    10201 aaaacaaagt gatctggctg ctgtgcttcg ccaacatttt cctctatgtg gtacgtattg
    10261 gtatcgacca gtggtcaacc gtatacgcgt tccaggaact gaaactctct aaagcggtgg
    10321 cgattcaggg ctttacgctg tttgaagctg gtgcgctggt cggtacgctg ctgtggggct
    10381 ggctctctga cctggcgaac ggtcgccgtg gcctggtggc ctgcatcgcg ctggcgctga
    10441 ttatcgccac gctcggtgtg tatcaacatg ccagcaacga atatatctat ctggcttctc
    10501 tctttgcgtt gggtttcctg gtctttggcc cgcaattgtt gattggtgtg gctgctgttg
    10561 gctttgtacc taaaaaagcg attggcgctg ccgatggtat taaaggcacc tttgcttacc
    10621 tgattggtga cagctttgcc aagttaggtc tgggaatgat tgccgatggg acgccggtat
    10681 tcggccttac cggctgggca ggcaccttcg ccgcacttga tatcgccgcg attggttgta
    10741 tctgcctgat ggcgatagtg gcggtgatgg aagaacgcaa aatccgccgc gagaaaaaaa
    10801 ttcagcagtt gacagtggca taaacgtaac tggtgacttt tgcccggcat gacgccgggc
    10861 ttttttatta ttccgtgact tccagcgtag tgaagacaaa cttctcgcca tcaaatagcc
    10921 cctgactggt tagtttgagc gcggggatca ctggcagaga aagaaacgcc atctgaataa
    10981 acggctcatc gggtaacgga ccgcattcac gggcggcggc tttcaaggcg tcaatttgtt
    11041 ccgccagcga ctgcgccgtg tcggtgctca tcaggccggc aatgggcaac ggcagatgac
    11101 tttggacctg gccgttacgt accacgcaca gcccgccgcc atcctgaatc acctgataga
    11161 ccgccagcgc catctcttcg gcactgcgac cgatcaccac aatattatgg ctgtcatggc
    11221 tgaccgtcgc agccagcgca ccttcattca gtccaaagcc gccaagcaaa ccacaagccg
    11281 gagccagccg ttgcccgtaa cgctcaagta cggcaataaa gcacacatca tcgcgatcaa
    11341 aaccattttc gctgtagacg ctggagtggg agtgcgtaat caattcgtta tggatgacgt
    11401 caatgacccg atagcgtttt ccgggcgtaa attgcagggc aaagtcgctg gcggaaactg
    11461 gctggcgggc aatggtgttg ccatatggcg gagcggattg tgccagtctc gccgactctt
    11521 ccgcctgtaa ggtttgcgca tcaatcggct cgcctttcac cagtacctgc tgcaccgtga
    11581 ccttacgcgc atcgctcaac aggacgatat cggcctgctt gccgggtgcc agtaagtcga
    11641 ggtgattcag accaaagtgg cgcgccgtcg accagctggc gacgcgatat gccacatgca
    11701 gcggcacatt gtgttgttcg atcaggcggc gaattaaggc atcgatgtgt ccttcatggg
    11761 cgatctccca cgggttacgg tcatcggtac agagcatgca ttgcgggctg ttaaattcgt
    11821 tgatcaacgg tgccagcgcg ttgagattgc gggcagcgga cccttcgcgg atcatcaacg
    11881 acatgccgag ttgtaatttc cggcgtcctt cttccagctg ataactttcg tggcagtttt
    11941 caatacccgc agtaatatag gcgttaagtt ctttaccacc caaacccggg cagtgaccgt
    12001 ccagcgtcag gtggcgaaat gcatccagtt tatcgagcag cgcattctgc ccgctaatta
    12061 cgccagggta gtccatcatt tctgcaaggc cggtaacctg cggatggtcc cgccaggcga
    12121 gcatctgttc aagggtaaaa ctggcaccgt taacatcgca gccttccagg gcgggtacgc
    12181 aagagctgac ctgtaagtac tggttttgcc ttgcctgttc ggcacagcgg gcaaaccagg
    12241 cgaatccggc ttctcccatc acgttgacga tttcatgagg gtcgcaaata acggtcgtca
    12301 ggccgcgcgg cagggtagcg gtttcaaagg tgaccggcgt catcatgctg gattcaatat
    12361 gcaggtgagc atcaataaac cctggcaccg ccgttgcgcc gcgagcatca atccgctgca
    12421 aagccggagc atcagcgtat tctgcgccaa caccggcaat gtaacgtcct ttaatcacaa
    12481 ttgggccgga aatttctccg ccattgatca ggtcgagaat agagacatta tcaataatat
    12541 aatcggcaac agcgtcgcca cgggaaacgg ctaacaattc ctggtattca gcccggctaa
    12601 tgtgatgaaa tttatggtta atggaattat tcatattttt ctcattttga ttttatcaat
    12661 ttgattatta tttatcataa agaaacgtcg cgagattatt aaagaatatc tattaatgtg
    12721 caattgaaat gtgataatta tcactgaacc gttgttgtca tttgttttac aaaagcaagg
    12781 gattaaatct cctccaatgg acaaaaaaat gaataatgac aataccgatt acgtgagtaa
    12841 tgaatcaggg atgctttcgc gattatttaa actacctcag catgggacca ccgtccgcac
    12901 agaattgatt gcggggatga ccactttttt aaccatggtg tacatcgttt ttgtgaaccc
    12961 gcaaatcctc ggcgcggcac aaatggaccc gaaagtggtg tttgttacca cctgtttgat
    13021 tgccggtatc ggcagtattg cgatggggat atttgctaac ttacccgtgg cgctggctcc
    13081 ggcaatgggg ctgaacgcct tctttgcctt cgtggtcgtg ggggcgatgg gcatctcctg
    13141 gcagaccggg atgggcgcaa tattctgggg cgcagttgga ctatttttgc tcacgctgtt
    13201 tcgtatccgg tactggatga tctcc
//
LOCUS       DAJVUY010000115        13092 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.115, whole genome shotgun sequence.
ACCESSION   DAJVUY010000115 DAJVUY010000000
VERSION     DAJVUY010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13092
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.115"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            4..1632
                     /locus_tag="OQQ72_002957"
     CDS             4..1632
                     /locus_tag="OQQ72_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001338794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HCS2012611.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVKLAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1871..1930
                     /locus_tag="OQQ72_002958"
     CDS             1871..1930
                     /locus_tag="OQQ72_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS2012612.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ72_002959"
     CDS             2247..2306
                     /gene="ibsE"
                     /locus_tag="OQQ72_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HCS2012613.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ72_002960"
     CDS             complement(2426..3859)
                     /gene="hldE"
                     /locus_tag="OQQ72_002960"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HCS2012614.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ72_002961"
     CDS             complement(3907..6747)
                     /gene="glnE"
                     /locus_tag="OQQ72_002961"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HCS2012615.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSAQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMMLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ72_002962"
     CDS             complement(6770..8071)
                     /gene="ygiF"
                     /locus_tag="OQQ72_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HCS2012616.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8313..8933
                     /locus_tag="OQQ72_002963"
     CDS             8313..8933
                     /locus_tag="OQQ72_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HCS2012617.1"
                     /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY
                     RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV
                     KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV
                     QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPTRKRKERWMN"
     gene            8997..10235
                     /gene="cca"
                     /locus_tag="OQQ72_002964"
     CDS             8997..10235
                     /gene="cca"
                     /locus_tag="OQQ72_002964"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HCS2012618.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ72_002965"
     CDS             complement(10392..11213)
                     /gene="bacA"
                     /locus_tag="OQQ72_002965"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS2012619.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ72_002966"
     CDS             complement(11304..11672)
                     /gene="folB"
                     /locus_tag="OQQ72_002966"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HCS2012620.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ72_002967"
     CDS             11777..12394
                     /gene="plsY"
                     /locus_tag="OQQ72_002967"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HCS2012621.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12407..>13092)
                     /gene="ttdR"
                     /locus_tag="OQQ72_002968"
                     /gene_synonym="dan"
     CDS             complement(12407..>13092)
                     /gene="ttdR"
                     /locus_tag="OQQ72_002968"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HCS2012622.1"
                     /translation="VDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQV
                     HFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSL
                     QELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIML
                     RSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRLG
                     KPDEGYQVM"
BASE COUNT         3162 a         3683 c         3282 g         2965 t
ORIGIN      
        1 tggatgttta ccgcgattat tgccgtatgc attctgttta ttattggaat tattttcgcc
       61 aggctctatc gtcgcgcttc ggcagagcaa gcttttgttc gtactggttt aggtgggcaa
      121 aaagtggtga tgagcggtgg cgcaatcgtg atgccgatct ttcatgaaat aatccccatc
      181 aatatgaata ctctgaagct ggaagtcagc cgctcaacca ttgatagcct gattacgaaa
      241 gatcgtatgc gtgtcgatgt agtagtcgct ttctttgtac gggtaaaacc gtctgtagaa
      301 ggcatcgcca ctgcggcgca gacgttgggg caacgcacgc tatcaccaga agacttacgt
      361 atgttggttg aagataaatt tgtcgatgcc ctccgtgcaa cagctgcaca aatgaccatg
      421 catgagttac aggatacccg cgagaacttc gtgcagggag tacaaaatac tgtcgcagaa
      481 gacctgtcga aaaacggtct tgagctggaa agcgtttcac ttaccaactt taaccagacc
      541 tcgaaagaac atttcaatcc gaacaatgcc tttgacgccg aaggtttaac caaactgatt
      601 caggagacgg agcgccgtcg tcgcgaacgt aacgaagttg aacaggatgt agaagttgcg
      661 gtgcgtgaga aaaaccgtga tgcactttcg cgcaagttgg agattgaaca acaagaagcg
      721 tttatgacgc ttgagcagga gcagcaggtt aaaacccgta ctgccgaaca gaatgcacgt
      781 attgcggctt ttgaagctga acgtcgtcgt gaagcagagc agacgcgaat tctggctgaa
      841 cgacaaattc aggaaacgga gatcgagcgc gagcaggccg tccgctcaag aaaggttgag
      901 gctgaacgtg aagttcgtat taaagagatc gaacagcagc aggtcaccga aatcgccaac
      961 cagacgaaat cgatcgctat tgccgccaaa tcggaacaac agtcccaggc agaagcgcgt
     1021 gctaaccttg cactcgcaga agcagtaagt gcgcaacaaa acgtagaaac cactcgccag
     1081 accgcagaag ccgatcgtgc taaacaagtt gccctaatcg ctgccgcgca ggatgcagaa
     1141 accaaagcgg ttgaactgac cgtgcgggcg aaagcagaaa aagaagccgc agagatgcag
     1201 gcggcggcta tcgttaagtt agccgaagct acacgtaaaa agggtctggc ggaagcagaa
     1261 gcacaacgtg cgctgaacga tgctatcaac gtactttctg atgaacaaac cagccttaaa
     1321 ttcaaactgg ccttgttgca ggcgctacct gcggtaatag aaaaatccgt tgagccgatg
     1381 aaatctattg acggtatcaa gattattcag gtcgatggtc tgaatcgtgg cagcgctgcg
     1441 ggtgatgcaa acacgggtaa tgtggggggc ggaaacctgg cggaacaagc attatcagcc
     1501 gctctctctt accgcacaca ggcaccgctg attgactcct tgctcaatga aattggcgtt
     1561 tcaggcggct cactggcggc attgacttca cccttaacct caacaactcc cgtcgccgaa
     1621 aacgtagaat aaattttcag ctatgaacgt ccctggcaca aaaagccggg gattttttat
     1681 atctgcgttc cgctaaaaac tgcaaatgat caggtcgttg caacgttttg cgtgaccgct
     1741 cggggaaggc aaaactgcct ctgggaaagc gttgcgcgag gtccggcgct catcaacaat
     1801 cggggagtca gcaaagggct gaaacgggaa agcccctccc gaggaagggg ccttacagaa
     1861 ggaaagggtt atgatgaagc tcgtcatcat actgattgtg ttgttactcg taagtttcgc
     1921 agcttattaa cagccaatca gaggggggag aaatcctccc tcacccttgt tcctttactt
     1981 taggttgaaa aaaaatcagc gtcaagaagg tttcattaac acatatccct agcccaaaaa
     2041 gccggggatt ttttatatct gcgttccgct aaaaggtgca aatgctcagg acgttgcagc
     2101 gttttgcgtg accgctcggg gaaggcaaaa ctgcttcagg gaaagcgttg cgcggggtcc
     2161 ggcgctcatc aacaatcggg gagtcagcaa ggggctgaaa cgggaaagcc cctcccgagg
     2221 aaggggcctt atagaaggaa agggttatga tgaagttcgt catcatactg gttgtgttgt
     2281 tactgttaag tttcccgact tactaacaac tgatcagagg ggggagaaat cctcccttac
     2341 ccttgttcct ttactttagg ttgaaaaaac aacagcgtca ataggcctgc ctgctacgaa
     2401 gcgagatctg tgaaccgctt tccggttagc cttttttatc ctgttggatc ttcttgatga
     2461 tgttagtggt cgagcaaccg tcttcgaagt tgagcaccag cacttcgccg ccgttggccc
     2521 agacttcttt actcccggcg atctcttctg gtttatagtc gccgcccttc accagtaaat
     2581 ctggcaggat cccggcgatc aagcgctgcg gcgtgtcttc ttcaaacgac accacccagt
     2641 cgaccgcttc cagtgcgccc agcacaatca tacgctgttc gagcgggtta acggggcggg
     2701 aatccccttt cagccgtttg gtggaggcat cgctgttcac agcgacaatc agacggtcac
     2761 ccagtttgcg agcatttgcc agataggaga cgtgcccggc atgcaggatg tcaaagacac
     2821 cgttggtcat taccaccttt tcgccgcgtt tacgcgctgc cgctacggcc agcttcagtt
     2881 cctcttcggt catcacgcca aagccggtat ctgcgcgccc acgcactgca ttttccagct
     2941 cgatcggcga aaccgtggag gttcccagtt tgccgaccac cacgccagcc gccgcattgg
     3001 caaagaagca ggcttcttcc agcgaattac ccgctgccag cgttgccgcc aggacgccaa
     3061 tcaccgtgtc gcccgcaccg gtaacgtcat acacttcctg cgcctgggtt ggcatatgca
     3121 gcggcgcttt acccggttgc agcagcgaca taccctgttc ggaacgggtc actaacagag
     3181 ccgagagttc gtaatcggca atcagtttca tgccgcgctc aacaatctct tcttcggtct
     3241 tacatttacc gacaacagct tcaaattccg agagattcgg cgttaacagc gtagcgccgc
     3301 ggtagcgctc aaaatcggta ccttttggat caatcagcac cggaacgccc gctttacgcg
     3361 ccagttggat catctgctgt acgcttgcca gcgcaccttt ggcgtagtca gaaagcacca
     3421 gcgcgccaat cgaactcagc gcctgattaa tccgctcgtg cagcggctgc ggatcaacgc
     3481 cttcgaaacc ttcttcgaaa tccagacgga tcagctgttg gttgcgggaa agtacccgta
     3541 atttggtgat ggtcggatgc gtcggtacag aaacgaagtc gcatttgacg ttgacgtcgg
     3601 ccagagattt actcagcgcg cgcgctgcat cgtcaatgcc cgtcaacccg accaggcgtg
     3661 cattagcacc gagagaagcg atattcatcg ccacgttagc cgcgccgccc ggacgttctt
     3721 cgatggtatt cactttaacc acgggcaccg gcgcttccgg cgagatacgg ctggtgggac
     3781 cgtaccagta acgatccagc attacatcac caaccaccat cactcctgca cgttcaaact
     3841 ctgacagcgt tactttcatt cctgtctcct gagagattca aaatttgcgc gcgataatac
     3901 catacttcat tcttccacca gccacttctg ccagcttgcc cgcaccagat cacgctctgc
     3961 ggtgaagcaa tcctccgaca catggcccgg caattcctgt aatgccagat gatgaagttc
     4021 atcgcgcagc gtcgtgtaag cacgggtcag cgccatcgct tcctgctctt ccataatgtc
     4081 gttttgcgcc agcagctcca gaatacgcac gttgtctgac cagcgcgtta acttcggttt
     4141 ttcatgagcg tagcgcaaca ccagatattg ggtaataaat tcgatatcgg taattccgcc
     4201 ttcatcggct ttgatatcaa agcgattacg atgtttattg ccgagatgag cgcgcatttt
     4261 ctcgcgcatt tcccgcactt ccgtttgcag agttttacct tcacgcggca gcatcataat
     4321 ctcgcgacgc actgcgtcaa agtgcgcggt gagctgcgga tcgccgtaca ctacacgcgc
     4381 acgcaccagc gcctgatgct cccacgtcca ggcctcgttt ttctgataat cagcaaatgc
     4441 ttctgcggat gtcaccagca ttcccgccgc cccggacgga cgcagtcgtg catccacttc
     4501 atacaaaatg ccggaagagg ttcgcgtatt gaacagatgc ataatgcgtt gcgccagacg
     4561 cagataaaac tgtcgcccgt cgatttcccg ctcgccgtca gtcatcgcat ccattgggca
     4621 atcatggagg aagatcaggt caagatcgga actgtagcct aactcccagc cgcccagctt
     4681 gccgtagccg accaccgcaa aaccacggcc ttcgcgatcg ttgaggtgat ttggcttacc
     4741 gtagcgggcc accatttgaa cccacgcctg ctgaacgacg gcatctatca tagcctctgc
     4801 cagccaggtt aagtgatcgc tcactttcat caccggtagc gtaccagcga tatccgctgc
     4861 ggcgatgcgt aacagctgcg cctgtttgaa ctgacgcagc gcctcaagct gttgctcttc
     4921 gtcatcttcc ggcacgcgca gcaaatactg gcgcaactca tcgcggtagg catcggtcgc
     4981 cgtcggctgg taaagagtgt ttggatcgag caattcatcc agcaataatg gataacgcgc
     5041 cagctggctg gcaatcatcg gcgatgcggc acacagagaa atcaaatgtt taagcgccgc
     5101 agggaattca ctgagcaatt ctaaataggt ggtgcgggta acaatcccca ccagcaaggc
     5161 ggtaatgcgc gacagcgtaa cggcagcgtc ttcacgcgca cagacatcac ttagcagatg
     5221 tggcatcaga tggtcgagca cctgacgtcc tcgcggcccg atagtacgct tatccagctc
     5281 tttgcggaaa tcagcaatca gcgttaggac ctgtttgcga tcatcctcgc taagatgcgc
     5341 cagcactggc gtagtgtcat cttcctgcaa cgcatcctgc cacagctcac gccactgttc
     5401 cgacagcgac tcttcctgag tttcactttc gtcgtcgcca atcaattcat taaacacccg
     5461 gcgcacattg gtcatatgtg cggtcagcgc cccggtcagt tgcggccagt cagcaaagtc
     5521 catcgcccac gccagccgcg cacggttaag ctcatcagaa ggaagcgttt gggtttgttc
     5581 gtcgttaatg ctttgcagca ggttttccag acgccgcagg aacagatatg ccactcgcaa
     5641 ttgttcagca tcgttttcag aaagcagatg cagcgcggca atgacgctga gcgttggcag
     5701 taaagagcgc gactgcagcg acggttcgcg cccaccgcga atgagctgga acacctgaac
     5761 gataaattca atttcgcgaa tgccgcctgc gccgagtttg atattgtcgg tcaaaccacg
     5821 tcgacgcact tcacgggcaa tcatcccttt catgttgcgc agcgactgaa tcacgctgaa
     5881 atcgatgtaa cgacggaaaa caaacgggcg cagcatcgca cgcaactcgt tagcatagac
     5941 gccttcgcta tcgcccataa tccgcgcctt gaccatcgcg taacgctccc agtcgcgccc
     6001 ctgctcctgg taataatcct ccaacgcggc aaagctcagc accagcgggc cactttcgcc
     6061 aaacggacgc agccgcatat ccacgcgata gacgaagcca tcctgcgttg gttgatccaa
     6121 cactttaatc agccgctgcc ccatgcgggt aaaaaactgc gcgttatcca gttcccggcg
     6181 tccgccctgc gtacaaccat gttccggcca ggcaaaaatc agatcgatat ctgaggagaa
     6241 attcagttcc ccaccgccca gcttacccat gcctaaaatc agcagcggtt gcgcttcgcc
     6301 ctgcgcattg cacggcgttc cccactcgcg gcagcaagcg tcatacagcc agtcacgcgc
     6361 ggcgacaatc agcgtctccg ccagatggct gagctgctgc aatatgctct cttcagtaac
     6421 caaagccagc gtttgcgccc aggcgatgcg caccataatg cgccgccgga atagccgcag
     6481 ctcgcgcatt aacccggctt cgtcactcac attgctgagc gcctcctgca accatgccgc
     6541 gtaatgctgc cattcatcag cctgcggcga ttggctttcc agttccgtca gccactctgg
     6601 atgcgcaatc acgctgtcct gcacaaaatc actgaaagta agtactgact tcgcctgtgc
     6661 gctaagtgat ttctcggcta aaggctctgg cagccgctca acaacggtct gccagtactg
     6721 ctgtaacggt gaagagagcg gcttcataag cgattttatc cttgcctgat taacgttttc
     6781 cgctgtgcaa ccagaacggt tcctgattgt ttgcctcatt acggaaatgt tcaatttcaa
     6841 tgcgttgccc ggtcgcaata gcgtgacgca gcccctgcca gttctccagc caggcttgcg
     6901 cgacgacagg atcatagtaa cccgccagca acagtattga gtcaatatca cgcgtcagac
     6961 gtggcaactg gtcacggtag cgatcgccca acggctggca gaaaacgctt ttcagttcag
     7021 cggcatggcg ggaaagatgg atatcggcaa agcgtttgaa ggaatcgctc attttactct
     7081 gcgctttggc atctaaaaac ggctgccagg ctttgcttac cagccattcg gtcaacgcca
     7141 gcttcgccat tgccgttttg gtagagtaga ccgccgtcac ggcagaaacc gcagaagcga
     7201 tggtcgcttc gcattgagtc agcaaatcgc gtaagtgagt gctcgctttg cgcggcacaa
     7261 taccaccgaa cagcatcagt gtatgacgga ccagaccaat ggctgccagc acctgttctt
     7321 tcgccgcatc gttgccgcgt acccacagtt cttcatgata ctgccattgc gctaacgcca
     7381 gctcgagcgc cgcttccagc ccctgttcca catcggcttt tgccgcaaca tgcaaaatgg
     7441 tggtcggttt gatttcacgc gccggattgc cctgcgccag atgatagcca cgcgccgctt
     7501 tgctcaggct gccctggcgt aatccggttt gcgataccag ttggttcgcc agtttcagca
     7561 ccgcgcgcgt gtcgccgcta agcagttcca gttccagctc acagataggt tcagcaaatt
     7621 cccccgcttt cacctccccc tgatcgagag cgatttcaat tcggctgtca tcgaccgcca
     7681 ccagccattt ttcgcgataa aaatcggtgc tgaacagcgg ttgtacgcgg gaagcgagat
     7741 cggcgggcaa ttcgccgttc ggccagactt ccgtcggtaa ctgcgccagg tcgagcgtcg
     7801 gttcgctcaa cgccacgtta tattccgggc gctggtgtaa gccgcctgtc actcttcctg
     7861 caactttcat ggtcatctca tagcgaccgt tttcgccacg aatacgtaag cccatatcgt
     7921 gcccacgcag ccagttatcc ggcgtttcgt agtaaatatt cagcaactgc acggggtcat
     7981 ggtgctcgcc gcccagcgta ttgagatggt cacgcaacgc ctcaacggca ctgtgattaa
     8041 caataaactt taattcgatt tcctgagcca tggcctttac ttatcggtta tgtcacataa
     8101 gtgacgatga acggcgaact taatgcgatc ttttttgtca gtagatagta ttttgcgcca
     8161 aattgccatg caacgggcaa tttgacgggc gtaaaagttt gaagcagtgg caagacctga
     8221 cacagaggat tccgattgat gtcgaatgct ttgcgtagcg acactgatgc cactactatc
     8281 gttccacttt ccatgacaat aacgacagcc tgatgccaaa attacgcctg atcggattaa
     8341 ctttactcgc acttagcgcc actgccgtct cacacgctga agaaacgcgc tatgtttctg
     8401 atgaactgaa tacctgggtc cgtagcggtc cgggagatca ttatcgcctc gtgggcacgg
     8461 ttaacgccgg cgaggaagtg accttattac aaactgacgc caacaccaat tatgcccagg
     8521 tgaaagacag ctctggccgt accgcctgga tcccgttgaa acaacttagc actgagccaa
     8581 gcctgcgctc ccgtgtgcca gatctggaaa atcaggtcaa aaccctgacc gataaactca
     8641 ccaatatcga taacacctgg aatcagcgca ccgcagaaat gcagcaaaaa gtggcgcaga
     8701 gcgacagcgt gatcaacgga ttaaaagaag aaaatcagaa attgaaaaac gagctgattg
     8761 tcgcgcagaa aaaggtcgat gccgccagcg tacagctgga tgacaaacag cgcaccatca
     8821 tcatgcaatg gtttatgtat ggcggtggcg tgctggggct tggcttgctg ctcggtctgg
     8881 tactgccaca cctgatccca acgcgcaaac gcaaagagcg ctggatgaac taaatcgcct
     8941 tcttcgttgc actgtcttat tattaggaat tgtgtatttg acgaagggat gatggcgtga
     9001 agatttatct ggtcggtggt gctgttcggg atgcattgtt agggctaccg gtcaaagaca
     9061 gagattgggt ggtggtcggc agtacgccac aggagatgct cgacgcgggc taccagcagg
     9121 taggccgcga ttttcctgtg tttctgcatc cgcaaacgca tgaagagtat gcgctggcac
     9181 gtaccgaacg gaaatccggt tccggttaca ccggttttac ttgctatgcc gcaccggatg
     9241 tcacgctgga agatgatctt aagcgtcgcg atctgaccat taatgcgctg gcccaggacg
     9301 ataacggcga gattatcgac ccgtacaacg gtctgggcga tctgcaaaat cgtctgttgc
     9361 gccatgtttc ccccgctttt ggcgaagatc cgttacgcgt tctgcgcgtg gcgcgttttg
     9421 ctgcgcgtta tgcccacctc ggttttcgta ttgccgatga aactctgacg ctgatgcgcg
     9481 agatgaccca tgcgggtgaa ctggaacacc tgacgcctga acgggtatgg aaagagacgg
     9541 aaagcgccct caccacccgc aatccccagg tgttcttcca ggtactgcgc gattgcggtg
     9601 cacttcgcgt tttattcccg gaaattgacg ccctgtttgg cgttccggcc cctgccaggt
     9661 ggcatccgga aatcgacacc ggtattcata ccttaatgac gctctcaatg gcggcgatgc
     9721 tgagtccgca ggttgatgtc cgtttcgcaa ctttatgcca cgatctcggt aaaggactga
     9781 cgccgccaga actttggccg cgtcatcatg ggcatggccc ggcgggtgtt aagttagtgg
     9841 aacaactatg ccagcgtctg cgcgtgccaa atgaaattcg cgatttagcc agactggtgg
     9901 ctgagtttca cgatctcatc cacaccttcc caatgctgaa cccaaaaacc atcgtcaaat
     9961 tatttgattc catcgatgcc tggcgtaaac cgcagcgtgt cgagcaactg gcgctgacca
    10021 gcgaggctga cgtacgcggc agaaccggtt ttgaatcagc ggactacccg caaggccgtt
    10081 ggttgcgcga agcctgggaa gtggcgcagt cagtgccgac aaaagcggtc gttgaagcgg
    10141 gatttaaagg tgtggagatt cgcgaggagc tgacccgacg gcggattgcg gcggtagcca
    10201 gttggaagga acaacgttgc ccaaagcctg actgagtata aaactaaacg ttaacacgaa
    10261 ccatcccctc gccccttcgg ggagagggtg aggggaacag accagcaccg gtgcgaacaa
    10321 tcacccccac cccggccctc tccctacaga gcgagggaga aaaccaggcc tgctcccgaa
    10381 ccttttctca atcaaaagaa cacgacgtac accgcagccg ccacaataaa gcgataaatg
    10441 gcgaacggga taaacgaaat gcgcttaatc aattgcagga aggttttaat cgctatcagc
    10501 gccaccacaa aagcggtgat aaacccaacg gcaaacatcg ggatatcgcc ggttgtcagg
    10561 aagccccagc ttttgtagag atcgagcgcc gttgcgccca tcatcatcgg taccgccagc
    10621 aggaacgaga actcggaagc agcgtaacgg ctcacgccca tcagcatccc acctgaaatg
    10681 gtggccccgg aacgggagaa acccggccac agcgccagac actggaaaca gccaatcata
    10741 aacgcctgac gataggtcat atcatcaaga cccggcgcac gcggctcttt cggcttcagg
    10801 cattcggcgg caatcagcaa caaaccgcca acgaccagtg catacatcac atttatcggg
    10861 ttaaacaatg acttaatcgt gtcgtggaac aacagcccca gtaccaccgc cggaatcatc
    10921 cccagcaaaa tgtggatcag cgttaaacga cctttgcttt ctccttcgtg ctgcaacggg
    10981 cggccaaagt ggatgccaat caggccaaac agacgccgcc agaacatcac tactaccgcc
    11041 agaattgatc ctaactggat cacaacttca aaggttttcg ccgtgtcgcc ctcgaacccc
    11101 aacaagtgac cgacaataat catatggccc gtgctggata ccggcagaaa ttctgtcaat
    11161 ccttcgacca cacccaatat tgccgctatc agcagcgagt gcatatcgct catcaataaa
    11221 cccctaaatt attaaaatgt accgcttgtc cggactactg cagtaagacc aggttataac
    11281 cgtttggttt aacagctgta aaattaatta ttttctttca gattattgcc acgctcaatg
    11341 attacaccaa cattcgccgc ccgcgccact gcgcctggct tgctgagttt gatgcgcacc
    11401 cacggcgagt tgaagcgtgc taacagcagc tccgccacct cttcagccac gcgttccacc
    11461 agcgcaaaac gcgccccctc gacgtggctg accaccgttt ctgcaatgtc agcgtaactg
    11521 aggcaatccg ccacatcatc acttttcgcc gctttacggt tatcccatgc catttcgata
    11581 tcgaacacta acttctgttc gatggtctgt tcccagtcgt aaacaccaat agtggtgatt
    11641 accgaaagtt gctctataaa tacaatatcc atcacgtcct gcctgctttt tggctaaccg
    11701 gataccactt ccggcgaaat gtgcgtatta tccacagatt catcgttgaa cacgaatttt
    11761 caaaacggaa cagcttatga gtgcaatcgc gcctggaatg atcctcatcg cgtacctctg
    11821 cggctccatt tccagtgcca ttctggtttg ccgcttgtgt gggctgcccg atccgcgaac
    11881 cagcggctcc ggcaatccag gcgcaaccaa tgtgttacgt atcggtggca agggagcagc
    11941 cgtagcagta ctgattttcg acgttctgaa aggaatgttg cccgtctggg gcgcgtatga
    12001 attaggtgtc agccccttct ggctaggctt aattgccatc gccgcctgtc ttggacacat
    12061 ctggcccgtt ttcttcggat ttaaaggagg aaaaggcgtt gctaccgctt ttggtgccat
    12121 cgcacccatt ggctgggatc tcaccggagt aatggcggga acctggttac tgaccgtgct
    12181 attgagcgga tactcgtcgc tgggagcgat tgtcagtgca ctgattgctc cgttttatgt
    12241 ctggtggttt aagccacaat tcaccttccc agtttcgatg ctctcttgcc tgatcctgct
    12301 gcgtcatcat gacaacatcc agcgtctgtg gcgtcgtcag gagacaaaaa tctggacgaa
    12361 attcaaaaga aagcgcgaaa aggatcccga gtgatttctg gtggatctac atgacctgat
    12421 agccttcatc gggcttgccc agccgttgct ggcaccatgc cgccagaaat tccacgcaga
    12481 cacgtaattt catgctgcga tagagcggct cccggtaaac agcccagata ttggcgcttt
    12541 gtgcatactc cggcaatact tgcaccagtt tgccactctc cagaaacggc aacacatccc
    12601 actcggaacg cagcataatc cctttgccct ccagcgccca ttgcaacact atctcgccgc
    12661 tattggagga aagatgcccg ctaaccttca ccgatttttt ctcctgaccg ttccccaact
    12721 cccatattcc gtgggtcata tcgcgctctt tggtcaccag acagtcatga cgacttaatt
    12781 cctgtaatga ttgtggctgc ggatattttt gcagatactc aggtgctgcg cataatattc
    12841 ttttattttt cgttaacaga tgcgcaatat aataatcagg aatttcgtca ttaatacgaa
    12901 tatccagatc aatattatcc tgcactaaat caatttgccg atcgaacaat tcaaaatgca
    12961 cctgtaactc aggataattg cgcataagtt cggtaatggc tggcgcaata tggctgcgcc
    13021 caaaaccaaa actgcaacca atacgaatca tcccctccgg gcgcgttttg atttgcgtga
    13081 cgtcatcgac ca
//
LOCUS       DAJVUY010000116        12993 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.116, whole genome shotgun sequence.
ACCESSION   DAJVUY010000116 DAJVUY010000000
VERSION     DAJVUY010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12993
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.116"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(17..523)
                     /gene="mug"
                     /locus_tag="OQQ72_002969"
     CDS             complement(17..523)
                     /gene="mug"
                     /locus_tag="OQQ72_002969"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HCS2012623.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            648..723
                     /locus_tag="OQQ72_002970"
     tRNA            648..723
                     /locus_tag="OQQ72_002970"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:681..683,aa:Ile,seq:cat)
     gene            complement(777..1541)
                     /gene="nfeF"
                     /locus_tag="OQQ72_002971"
     CDS             complement(777..1541)
                     /gene="nfeF"
                     /locus_tag="OQQ72_002971"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HCS2012624.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGGASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1829..2452
                     /gene="nfeR"
                     /locus_tag="OQQ72_002972"
                     /gene_synonym="yqjI"
     CDS             1829..2452
                     /gene="nfeR"
                     /locus_tag="OQQ72_002972"
                     /gene_synonym="yqjI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NfeR"
                     /protein_id="HCS2012625.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2606..4126)
                     /gene="aer"
                     /locus_tag="OQQ72_002973"
     CDS             complement(2606..4126)
                     /gene="aer"
                     /locus_tag="OQQ72_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerotaxis sensor receptor Aer"
                     /protein_id="HCS2012626.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVRPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSIIASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4543..5922
                     /gene="ygjG"
                     /locus_tag="OQQ72_002974"
     CDS             4543..5922
                     /gene="ygjG"
                     /locus_tag="OQQ72_002974"
                     /EC_number="2.6.1.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417544.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
                     /protein_id="HCS2012627.1"
                     /translation="MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKE
                     HVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPV
                     VVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKL
                     AKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAM
                     RTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTG
                     MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFG
                     GNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMA
                     IEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA
                     AMRVSVEEA"
     gene            complement(5964..6296)
                     /locus_tag="OQQ72_002975"
     CDS             complement(5964..6296)
                     /locus_tag="OQQ72_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HCS2012628.1"
                     /translation="METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGEKTLQ
                     TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM
                     MPAGVRVV"
     gene            6515..7498
                     /gene="ebgR"
                     /locus_tag="OQQ72_002976"
     CDS             6515..7498
                     /gene="ebgR"
                     /locus_tag="OQQ72_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator EbgR"
                     /protein_id="HCS2012629.1"
                     /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK
                     LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTN
                     CYEHSGLPDIKNVTGILIVGKPTPALRAAACALTDNICFIDFHEPGSGYDAVDIDLAR
                     ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS
                     SSGYELAKQMLAQEDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR
                     FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR"
     gene            7682..10774
                     /gene="ebgA"
                     /locus_tag="OQQ72_002977"
     CDS             7682..10774
                     /gene="ebgA"
                     /locus_tag="OQQ72_002977"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit alpha"
                     /protein_id="HCS2012630.1"
                     /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL
                     SGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP
                     FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF
                     DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT
                     DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF
                     AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV
                     MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL
                     FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES
                     GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR
                     IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD
                     YGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTT
                     LDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSR
                     TRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKM
                     SGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQ
                     SDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFT
                     MGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRW
                     TALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLG
                     SNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
                     "
     gene            10771..11220
                     /locus_tag="OQQ72_002978"
     CDS             10771..11220
                     /locus_tag="OQQ72_002978"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HCS2012631.1"
                     /translation="MRIIDNLEQFRQIYASSKKWQRCVEAIENIDNIQPGVAHSIGDS
                     LTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK
                     GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
     gene            11283..12716
                     /locus_tag="OQQ72_002979"
     CDS             11283..12716
                     /locus_tag="OQQ72_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2012632.1"
                     /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF
                     LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS
                     LLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLM
                     LLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY
                     VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY
                     FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA
                     RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD
                     HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA
                     WWKYSKYIKGLTAEERHIEATPASNVD"
BASE COUNT         3130 a         3489 c         3249 g         3125 t
ORIGIN      
        1 ttttcggtgg cgttttttat cgcccacgca ctaccagcgc ctggtccagc tcgcgatacg
       61 cttcaaccag tttctctagt gaaacgcgac ttaaaccgct gggatttggc agcacccaaa
      121 tctgcgtcga accaatggtg agcgtttgtt tcccccactg tgcaccgcgc tggctgaatc
      181 cctgttcata tgcttgtttg cccagaatcg ccaacgcctg cggctgataa tcttcaattt
      241 tttcaatcag cttacgccca cctgcgtgca gctcctgctt tgaaacttca ttggcttgca
      301 ccgttggacg gtctaccagt ttggtgacgc cacaacgata atccagcaga tgctgtgcct
      361 cctgcggctt caactgacgg tcggtaaacc cggcctgata tatcaccttc cagaagcgat
      421 ttgctggatg agcaaaggga aaaccagtcc cggcggatga aagcccaggg ttgataccgc
      481 aaaacacgac ccgtaaccct ggagccaaaa tatcctcaac catatttact cctttctaac
      541 atcaccagga aaagtataac ggattgaaaa tacattgttt ataaaaacag caggcgcacg
      601 gtaatggctg gattgcgaca cggagttact ttataatccg ctaccatggc cccttagctc
      661 agtggttaga gcaggcgact cataatcgct tggtcgctgg ttcaagtcca gcaggggcca
      721 ccagatatag caaaggctga cgagaaatcg tcagcctttt tctttttata tctcagttac
      781 tttgcgtgcc agtaagccgc tgcacgtacc cgctgtgggt catactgttc cgcttcaaag
      841 cggcggctta aattcttaac gactttacct tcgccggtta tccagatgaa gtaatcatcg
      901 gcagggattt gcatctgcgc cagacgcgca tctaccgcct gctcatcatg tgccagccat
      961 tcgatattaa aaccatcaag gtgcgcgaga taatcctgac aggcgttatc ccgcacgcta
     1021 accagcgcac taacttgcgg tttaacggca agtttgctca acgtttccag gcggcggcgc
     1081 agtgcgggca ttccggattc atcgcagaca tacagctgat acgcgtaatc ttccggcacc
     1141 accagcgaac cgcgcggacc agccaccgta agtttatcgc ccggttgcgc ctgcatcgcc
     1201 cagccgctgg cgcccccacc gtcgtgaata aagaaatcga tcgccagttc atggcgtagt
     1261 tcgtcataca gcggcgtata gtcacgcgac ggtgggcgtg gtccttccgg ccagacgatg
     1321 ccctcttccg ttaccgttgg cggcacaaag tgagcgtcag gttgaggaaa gaagagtttg
     1381 ctgtgatcgt caaagccgcg cgatgtaaaa ccgtccagcg cctcgccgcc gaggacaatg
     1441 cgctgaaaac cggcgctgat gcgctcaacg cgtaacacag tcagttcacg gaagcgcaga
     1501 tcattgcgaa cgcgctgcgg gtagcggggg gagttattca ttgttatcgc cttcgtgatg
     1561 gtaatcagat atatctaaat aattttcgta aatgataatg attgttaatc atgataaatg
     1621 caagcgatta gtagaactga tatgtctata gtctgataag acgaaccgcc tcttctcagg
     1681 catcattact caacgccgga tgcggcgtga acgccttatc cggcctacgt gtgagatgag
     1741 tccacattta aaaatcattt ttattcttgc aagagtgctc atatcagata taaattagat
     1801 atatctaatc aagaaaaagg aggctgatat gagccatcat cacgaagggt gttgtaaaca
     1861 tgaaggccag ccacgccatg agggctgctg caaaggtgag aagtcagaac acgagcactg
     1921 cggacacggt caccagcatg aacacggtca atgctgcggt ggtcgccacg gtcgcggcgg
     1981 cggtcgtcgg caacgtttct ttggtcacgg tgaattgcgt ctggtgattc tggatattct
     2041 ctcgcgcgat gacagccacg gttacgaatt gattaaagcg attgagaatc taacccaggg
     2101 gaattacacc ccaagcccgg gcgtcatcta cccaacgctg gattttctgc aggagcagtc
     2161 gctgattacc atccgcgaag aggaaggtgg taagaagcag attgcgctga ccgaacaagg
     2221 cgcgcagtgg ctggaagaaa accgcgaaca ggtggagatg attgaagaac gcatcaaagc
     2281 gcgttgcgtt ggcgcggcgc tgcgccagaa cccgcaaatg aagcgggcgc tggataattt
     2341 taaagcggtg ctggatttac gcgtcaacca gagcgatatc agtgatgcac aaataaaaaa
     2401 gatcattgcg gtgatcgacc gcgccgcttt tgatattacg caactggatt aatcgccgca
     2461 tccgccagtg gcgcggtgca attgccggat gcgacgcttg acgcgcctta tccggcctac
     2521 acccactaca caccccgcag gcctgataag atgcgccagc atcgcatcag gcattgtgct
     2581 ccaaccgccg gatccggcat accgattaat gcagcaccgt caccgcgtct tccagtcggc
     2641 tggcgcggtg tttcaccatc gccgacacct gcgcactctc ttccaccagc tcagcatttt
     2701 tctgggtgat caggttaagc tcatccactg cacgggtcag gctggaaagc ccatcggcct
     2761 gttccagcgt tgaatggcta atctgggcga tcaactgggt gacgtttttc acctgtgcca
     2821 caatatcttc catcgtccgt ccggcggcgt gtacctgctg cgaaccggat tgcaccttat
     2881 cagcactggc atcaatcagc ttgcgaatat cgttggcagc attagcgctg cggctggcta
     2941 aatgacgcac ttcccctgcc accactgcaa aacctttgcc ctgttcgccg gcacgcgccg
     3001 cttccaccgc cgcattcagg gccagaatat tggtctgaaa cgcaatatcg ttaatcagcg
     3061 aagtaatggt gccaatgcgc tgggtactgt cggcgatatc gtccattgtc ttgatcaccg
     3121 tggtcatcgc ctccccaccc tgcactgccg cattactggc gatgatagaa agtttatcgg
     3181 cagccgacgc cgtggcagag ttctgtttca ccgacgccgc catttggttc atggtcgcca
     3241 ccgtttgctg aacgttatca actgtctgct gggtatgttc gttcagttca tcggtgcctt
     3301 tcgccagcgt ctcactgcca tttctgacac tggacacctg gcttgagaca tcgttaatta
     3361 gccaacggca catcaggcca agctgcccta ccgcgcgtaa tgtcagcccc agctcatcgc
     3421 tgcgattcag gtgctcaaca ctattacgct ctccggtcgc caccttcagt gcctgacggg
     3481 cgacattttc tatcgggcgc acaatctgcc attcaaaaca agcgcttgcc aacaatacca
     3541 ctaacacaca gaggaaatac gtcaccaccg gggcagcaac aaaccaaagc atggccgcca
     3601 gcaagataaa catcagggtc atcactccac gcgcccgcca gcgaagcggt aatgaaggca
     3661 gtttacccag ccagccttta cgcaccacca ggcctttatg aatacgctta ctggtacgtc
     3721 cggcgttcag cgctttgtac agcggctcca ccgccgcaat ctcttcatcc gtcgcccggg
     3781 tacgaatcga catatagcca ctgatttttc cctcgcgcac catcggtacc gcattggccc
     3841 gcacccaata atggtcgcca tttttgcggc gatttttcac gatgccgctc cagggctccc
     3901 cttttttcag ggtgaaccac atatccgcaa acgccgcttt tggcatatcc gggtgacgca
     3961 ccatgttgtg cggctgccct tgtaactctt gcaaggtaaa gccgctcacc tgcacaaaag
     4021 tgtcattagc atgagtgata tagctttgca gatcggtagt ggacatcaga gtggtatcgt
     4081 ccgccagcgg ggtattttgc tgggtgacat acggatgaga agacatgttc gcgtcctatg
     4141 caggttatat ggttgttaac ttcttgtcag agtttatgtc ggccccgctg cggttatctt
     4201 taaccgatta atttgattta gatcgcaatt tgcgattaaa gcacaaatct aattccttga
     4261 tttaaaatac tttcactctg ttactatacg aaaacgttaa ttatcttgcc caaaatcagg
     4321 caattatcgc cctgaaaacg tgcatttgca cagcaatcat caaatccata cccgacaaaa
     4381 accgtgcaaa ataacaacga atgttaacaa atagcattaa atactgcgca aatgataacc
     4441 acatttgtgt ttatcccgat tttcgcgatc gcagccggag tggcgcaatc cctgcaatac
     4501 ttaaatcggt atcatgtgat acgcgagcct ccggagcata ttttgaacag gttaccttcg
     4561 agcgcatcgg ctttagcgtg cagcgcccac gccctgaatc tcattgagaa gcgaacgctg
     4621 gatcatgagg agatgaaagc acttaaccga gaggtgattg aatacttcaa agagcatgtc
     4681 aatccggggt ttttagagta tcgcaaatct gttaccgccg gcggggatta cggagccgta
     4741 gagtggcaag cgggaagttt aaatacgctt gtcgacaccc agggacagga gtttatcgac
     4801 tgcctgggag gttttggaat tttcaacgtg gggcaccgta atccagttgt ggtttccgcc
     4861 gtacagaatc aacttgcgaa acaaccgctg cacagccagg agctgctcga tccgttacgg
     4921 gcgatgttgg cgaaaaccct tgctgcgcta acgcccggta aactgaaata cagcttcttc
     4981 tgtaatagcg gcaccgagtc cgttgaagca gcgctgaagc tggcgaaagc ttaccagtca
     5041 ccgcgcggca agtttacttt tattgccacc agcggcgcgt tccacggtaa atcacttggc
     5101 gcgctgtcgg ccacggcgaa atcgaccttc cgcaaaccgt ttatgccgtt actgccgggc
     5161 ttccgtcatg tgccgtttgg caatatcgaa gccatgcgca cggctcttaa cgagtgcaaa
     5221 aaaaccggtg atgatgtggc tgcggtgatc ctcgaaccga ttcagggtga aggtggcgta
     5281 attctgccgc cgccgggcta tctcaccgcc gtacgtaagc tatgcgatga gttcggcgca
     5341 ctgatgatcc tcgatgaagt acaaacgggc atggggcgca cgggcaagat gttcgcctgc
     5401 gagcatgaga acgtacagcc ggatatcctc tgccttgcca aagcgctcgg cggcggcgtg
     5461 atgccgattg gcgcgaccat cgccactgaa gaggtgtttt cagttctgtt cgacaaccca
     5521 ttcctgcata ccaccacctt tggcggcaac ccgctggcct gtgcggcggc gctggcgacc
     5581 atcaatgtgt tgctggagca gaacttactg gctcaggctg agcaaaaagg cgatatgttg
     5641 ctggacggtt tccgtcaact ggcgcgggaa tatcccgatc tggtacagga agcgcgtggt
     5701 aaagggatgt tgatggcaat tgagtttgtt gataacgaaa tcggctataa ctttgccagc
     5761 gagatgttcc gccagcgcgt actggtggcc ggaacgctca ataacgccaa aacgatccgc
     5821 attgaaccgc cactgacact gaccattgaa cagtgtgaac tggtgatcaa agcggcgcgt
     5881 aaggcgctgg cggccatgcg agtaagtgtc gaagaagcgt aatatcaaat cggatggcga
     5941 tacgacgtcg ccatccgatc tttttatacg acgcgtacgc ccgcaggcat catccgctcc
     6001 ggcgttaaca acacgctttc actgccgtca tcggtttccg cacacaacag catgcattcc
     6061 gacgtttcac cacgcatttt cgctttttgc agattgcata agaccaccac cgttttcccc
     6121 atcagctctt cttcgctgta gtacggcacc aggctggtca cggtttgcag tgttttttcc
     6181 cccacatcaa cctgtacgat gtacagcttg tcggcgtttt catggcgttt cacttccaca
     6241 atctttccga cgcgcatttc cagacgtgca aaatcagcgt aagccacggt ttccattgtt
     6301 tccttccttc gggtaaaatt ttactaaact atagcaaaag tttttctcaa tcctgtaggc
     6361 taaaaatgga gaatgcaggc gtgatcacat tcgtgagccg ctgtgttacc gttacagcgt
     6421 caaagaaacg cgctttattt actgaaaaca ggtgacccga taagtacttc ctctacaatg
     6481 ggggcgcaca tcagggaaag taaaaaaggt aaacatggca acactaaaag acatcgcaat
     6541 cgaagctggc gtatccctgg cgacagtatc cagggtctta aatgacgatc cgacattgaa
     6601 tgtgaaagaa gagacgaaac atcgcattct cgagatcgcc gaaaagctgg agtacaagac
     6661 cagtagtgcc cgcaaactcc agacaggtgc agtcaaccaa caccatattc tggctatcta
     6721 cagctaccaa caggagctgg agatcaacga tccttactat ctggcgatcc gccacggcat
     6781 tgaaactcag tgcgaaaagc tgggcattga gctcaccaac tgttatgaac acagcggatt
     6841 accagacatt aaaaacgtca ccggtatttt aattgtcggc aaacccacgc ccgcccttcg
     6901 cgccgccgcc tgtgcgttga ccgacaatat ctgttttatc gactttcacg aacccggcag
     6961 cggttacgat gcggtggata tcgatctggc acgcatcagt aaagaaatca tcgacttcta
     7021 tatcaatcag ggcgttaatc gtattggttt tattggcggt gaagatgagc caggcaaagc
     7081 ggatattcgt gaggtcgcct ttgcggaata tggccgactg aaacaagtgg tacgcgaaga
     7141 ggatatctgg cgcggaggct tttccagttc gtcgggttat gaactggcaa aacagatgct
     7201 ggcgcaggaa gactatccga aggcactgtt tgttgcttcc gattccattg ctatcggcgt
     7261 actgcgggca attcatgaac gaggcctgaa catcccacag gatatttcgc ttatcagcgt
     7321 taacgatatc cccaccgcgc gatttacctt tccgccgctc tccaccgtgc gcatccattc
     7381 cgagatgatg ggaagtcagg gcgttaacct ggtgtatgaa aaagcccgcg atggtcgcgc
     7441 gctgccgctg ttagtcttcg ttcccagcaa attaaaactg cgcggcacga cccgttaaat
     7501 ccccttacac actgtccggc aatcgttttt gccggacagt gctgccgttt attttcgtga
     7561 tccagttaaa gtaaatgcat ttatctgcta ctttttagta aaaattttac taaactcccc
     7621 agcaattaca caaactacca tcaccatgaa tggttccgat ttctctctac cgggaggccc
     7681 tatgaatcgc tgggaaaaca ttcagctcac ccacgaaaac cgacttgcgc cgcgtgcgta
     7741 ctttttttca tatgattctg ttgcgcaagc gcgtaccttt gcccgcgaaa ccagcagcct
     7801 gtttctgccc ttaagcggtc agtggaattt ccactttttt gaccatccgc tgcaagtacc
     7861 agaagccttc acctctgagt taatggctga ctgggggcat attaccgtcc ccgccatgtg
     7921 gcaaatggaa ggtcacggca aactgcaata taccgacgaa ggttttccgt tccccatcga
     7981 tgtgccgttt gtccccagcg ataacccaac cggtgcctat caacgtattt tcaccctcag
     8041 cgacggctgg cagggtaaac agacgctgat taaatttgac ggcgtcgaaa cctattttga
     8101 agtctatgtt aacggtcagt atgtgggttt cagcaagggc agtcgcctga ccgcagagtt
     8161 tgacatcagc gcgatggtta aaaccggcga caacctgttg tgtgtgcgcg tgatgcagtg
     8221 ggcggactct acctacgtgg aagaccagga tatgtggtgg tcagcgggga tcttccgcga
     8281 tgtttatctg gtcggaaaac acctaacgca tattaacgat ttcactgtgc gtaccgactt
     8341 tgacgaagcc tattgcgatg ccacgctttc ctgcgaagtg gtgctggaaa atctcgccgc
     8401 ctcccctgtc gtcacgacgc tggaatatac cctgtttgat ggcgaacgcg tggtgcacag
     8461 cagcgccatt gatcatttgg caattgaaaa actgaccagc gccagctttg cttttactgt
     8521 cgaacagccg cagcaatggt cagcagaatc cccttatctt taccatctgg tcatgacgct
     8581 gaaagacgcc aacggcaacg ttctggaagt ggtgccacaa cgcgttggct tccgtgatat
     8641 caaagtgcgc gacggtctgt tctggatcaa taaccgttat gtgatgctgc acggcgtcaa
     8701 ccgtcacgac aacgatcatc gcaaaggccg cgccgttgga atggatcgcg tcgagaaaga
     8761 tctccagttg atgaagcagc acaatatcaa ctccgtgcgt accgctcact acccgaacga
     8821 tccgcgtttt tacgaactgt gtgatatcta cggcctgttt gtgatggcgg aaaccgacgt
     8881 cgaatcgcac ggctttgcta atgtcggcga tatcagccgt attaccgacg atccgcagtg
     8941 ggaaaaagtc tacgtcgagc gcattgttcg ccatatccac gcgcagaaaa accatccgtc
     9001 gatcatcatc tggtcgctgg gcaatgaatc cggctatggc tgtaacatcc gcgcgatgta
     9061 ccatgcggcg aaagcgctgg atgacacgcg actggtgcat tacgaagaag atcgcgatgc
     9121 tgaagtggtc gatattattt ccaccatgta cacccgcgtg ccgctgatga atgagtttgg
     9181 tgaatacccg catccgaagc cgcgcatcat ctgtgaatat gctcatgcga tggggaacgg
     9241 accgggcggg ctgacggagt accagaacgt cttctataag cacgattgca ttcagggtca
     9301 ttatgtctgg gagtggtgcg accacgggat ccaggcacag gacgaccacg gcaatgtctg
     9361 gtataaattc ggcggcgact acggcgacta tcccaacaac tataacttct gtcttgatgg
     9421 tttgatctat tccgatcaga cgccgggacc gggcctgaaa gagtacaaac aggttatcgc
     9481 gccggtaaaa atccacgcgc gggatctgac tcgcggcgag ttgaaagtcg aaaataaact
     9541 gtggtttacc acgcttgatg actacaccct gcacgcagag gtgcgcgccg aaggtgaaac
     9601 gctcgcgacg cagcagatta aactgcgcga cgttgcgccg aacagcgaag cccccttgca
     9661 gatcacgctg ccgcagctgg acgcccgcga agcgttcctc aacattacgg tgaccaaaga
     9721 ttcccgcacc cgctacagcg aagccgggca ttctatcgcc acttatcagt tcccgctgaa
     9781 ggaaaacacc gcgcagccag tgcctttcgc accaaataat gcgcgtccgc tgacgctgga
     9841 agacgatcgt ttgagctgca ccgttcgcgg ctacaacttc gcgatcacct tctcaaaaat
     9901 gagtggcaaa ccgacatcct ggcaggtaaa tggcgagtcg ctgctgaccc gcgagccaaa
     9961 gatcaacttc ttcaagccga tgatcgacaa ccacaagcag gagtacgaag ggttgtggca
    10021 gccgaatcat ttgcagatca tgcaggaaca tctgcgcgac tttgccgtag aacagagcga
    10081 tggtgaagtg ttgatcatca gccgcacagt tattgcaccg ccggtgtttg acttcgggat
    10141 gcgctgtacc tacatctggc gcatcgctgc cgatggccag gttaacgtgg cgctttccgg
    10201 cgagcgttac ggcgactatc cgcacatcat tccgtgcatc ggtttcacca tggggattaa
    10261 cggcgaatac gatcaggtgg cgtattacgg tcgtggaccg ggcgaaaact acgccgacag
    10321 ccagcaggct aacatcatcg atatctggcg cagcaccgtc gatgccatgt tcgagaacta
    10381 tcccttcccg cagaacaacg gcaaccgtca gcatgtccgc tggacggcac tgactaaccg
    10441 ccacggcaac ggtctgctgg tggttccgca gcgcccaatt aacttcagcg cctggcacta
    10501 tacccaggaa aacatccacg ctgcccagca ctgtaacgag ctgcagcgca gtgatgacat
    10561 caccctgaac ctcgaccacc agctacttgg cctcggctcc aactcctggg gcagcgaggt
    10621 gctggactcc tggcgcgtct ggttccgtga cttcagctac ggctttacgt tgctgccggt
    10681 ttctggcgga gaagctaccg cgcaaagtct ggcgtcgtat gagttcggcg cagggttctt
    10741 ttccacgaat ttgcacagcg agaataagca atgaggatca tcgataactt agaacagttc
    10801 cgccagattt acgcctctag caagaagtgg caacgctgcg ttgaagcgat tgaaaatatc
    10861 gacaacattc agcctggcgt cgcccactcc atcggtgact cattgactta ccgcgtggag
    10921 acagactccg cgaccgatgc gctatttacc gggcatcgac gctattttga agtgcattac
    10981 tacctgcaag ggcagcaaaa aattgaatat gcgccgaaag agacattaca ggtagtggaa
    11041 tattatcgtg atgaaactga ccgtgaatat ttaaaaggct gcggagaaac cgttgaggtc
    11101 cacgaagggc aaatcgttat ttgcgatatc catgaagcgt atcggtttat ctgcaataac
    11161 gcggtcaaaa aagtggttct caaagtcacc atcgaagatg gttatttcca taacaaataa
    11221 caactacggc ggcaaaagga gtttgccgcc accgctaccc tacacatttt cggagatgtg
    11281 ttatgtctga taccaaacgt aatacaatcg gcaaattcgg cttgctctcg ctgacttttg
    11341 ctgccgttta cagctttaac aacgttatca ataataatat tgagcttgga ctggcctcgg
    11401 caccgatgtt tttcctcgcg acgatttttt attttattcc cttctgtctg atcatcgcag
    11461 aatttgtttc gttaaataaa aactcagaag ccggtgtcta cgcgtgggta aaaagttcgc
    11521 tgggcggacg ttgggcattt attactgcct atacctactg gttcgtaaac ctgttctttt
    11581 tcacctcact gttgccgcgc gttattgctt atgcttcgta tgccttcctc ggatacgaat
    11641 atattatgac gccggttgcc accaccatta tcagtatggt gctgttcgcc ttctccacct
    11701 gggtttccac caacggggcg aaaatgttgg ggccaattac ctccgtcact tcaacgctga
    11761 tgctgctgtt aacgctctcc tacattttac tggcaggtac ggcgctggtt ggcggcgtac
    11821 agcctgctga ccccatcacc gttgacgcga tgatcccgaa cttcaactgg gcgttcctcg
    11881 gcgttaccac ctggatcttt atggccgcag gtggcgcgga gtccgtcgct gtgtacgtta
    11941 acgacgtcaa aggcggttcg aaatcgttcg ttaaagtgat catcctcgcc gggattttta
    12001 tcggcgtact gtattccgtc tcctcggtgc tgattaacgt cttcgtcagc agcaaagagt
    12061 tgaaatttac cggcggatcg gtgcaggtat tccatggcat ggcggcgtat tttggtctac
    12121 cggaagcgtt gatgaatcgc tttgtcggtc tggtgtcctt taccgcgatg ttcggttccc
    12181 tgctgatgtg gaccgcaacg ccggtgaaaa ttttcttctc cgaaatcccg gaaggcatct
    12241 ttggtaagaa aaccgtcgaa ctgaacgaaa acggcgttcc ggcgcgcgca gcgtggatcc
    12301 agttcctgat cgtcatcccg ctgatgatta tcccgatgct cggttccaat accgtgcagg
    12361 atctgatgaa tactattatt aatatgaccg ccgcagcgtc catgcttccg ccgttattca
    12421 tcatgctggc ttacctgaat ttacgcgcca aattagatca cctgccacgc gatttccgta
    12481 tgggctcccg ccgcaccggt attatcgttg tttcaatgct gattgcgata tttgccgtag
    12541 ggtttgtcgc ttcgacattc ccgactggcg cgaatattct gaccatcatt ttttataacg
    12601 tcggcggtat tgttatcttc cttggctttg cgtggtggaa atacagtaaa tatataaagg
    12661 gattaacggc tgaagagcgc catattgaag cgacgccagc cagcaatgtt gattaagcag
    12721 aataataaaa aatgagcagg cattttccct cttcctggat gaggagaggg aaaatagttt
    12781 ctgcctttat atttttataa ttacaacgat aaaaggctgt actttttctt tagctcatgg
    12841 attaacacaa tgaaattaat cactgcacca tgcagagcat tacttgctct gccgttttgc
    12901 tacgcctttt ctgcggcagg agaagaagca cgtccggcag aacatgacga cacaaaaaca
    12961 cccgcaatta cctcgacatc ttctccttca ttt
//
LOCUS       DAJVUY010000117        12982 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.117, whole genome shotgun sequence.
ACCESSION   DAJVUY010000117 DAJVUY010000000
VERSION     DAJVUY010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12982
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.117"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            145..1119
                     /gene="cysB"
                     /locus_tag="OQQ72_002980"
     CDS             145..1119
                     /gene="cysB"
                     /locus_tag="OQQ72_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HCS2012633.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1414..1578
                     /locus_tag="OQQ72_002981"
     CDS             1414..1578
                     /locus_tag="OQQ72_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HCS2012634.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1581..1748
                     /locus_tag="OQQ72_002982"
     CDS             1581..1748
                     /locus_tag="OQQ72_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012635.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1862..1957
                     /locus_tag="OQQ72_002983"
     CDS             1862..1957
                     /locus_tag="OQQ72_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012636.1"
                     /translation="MINTNMKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2121..4796
                     /gene="acnA"
                     /locus_tag="OQQ72_002984"
                     /pseudo
     CDS             2121..4796
                     /gene="acnA"
                     /locus_tag="OQQ72_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
     gene            complement(4860..5450)
                     /gene="ribA"
                     /locus_tag="OQQ72_002985"
     CDS             complement(4860..5450)
                     /gene="ribA"
                     /locus_tag="OQQ72_002985"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HCS2012637.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5620..6384
                     /gene="pgpB"
                     /locus_tag="OQQ72_002986"
     CDS             5620..6384
                     /gene="pgpB"
                     /locus_tag="OQQ72_002986"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HCS2012638.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLLWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6533..6841
                     /gene="lapA"
                     /locus_tag="OQQ72_002987"
     CDS             6533..6841
                     /gene="lapA"
                     /locus_tag="OQQ72_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HCS2012639.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6848..8017
                     /gene="lapB"
                     /locus_tag="OQQ72_002988"
     CDS             6848..8017
                     /gene="lapB"
                     /locus_tag="OQQ72_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HCS2012640.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNRARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8210..8947
                     /gene="pyrF"
                     /locus_tag="OQQ72_002989"
     CDS             8210..8947
                     /gene="pyrF"
                     /locus_tag="OQQ72_002989"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCS2012641.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALAAGVDYM
                     VIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8947..9273
                     /gene="yciH"
                     /locus_tag="OQQ72_002990"
     CDS             8947..9273
                     /gene="yciH"
                     /locus_tag="OQQ72_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HCS2012642.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
     gene            complement(9399..9617)
                     /gene="osmB"
                     /locus_tag="OQQ72_002991"
     CDS             complement(9399..9617)
                     /gene="osmB"
                     /locus_tag="OQQ72_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HCS2012643.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(9886..10635)
                     /locus_tag="OQQ72_002992"
     CDS             complement(9886..10635)
                     /locus_tag="OQQ72_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS2012644.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(10725..10898)
                     /locus_tag="OQQ72_002993"
     CDS             complement(10725..10898)
                     /locus_tag="OQQ72_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012645.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(11045..>12982)
                     /gene="pdeR"
                     /locus_tag="OQQ72_002994"
     CDS             complement(11045..>12982)
                     /gene="pdeR"
                     /locus_tag="OQQ72_002994"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS2012646.1"
                     /translation="HNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVI
                     TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVS
                     EAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVF
                     FRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFLICSGTDITEERRAQERLR
                     ILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQL
                     LRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLI
                     EVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLW
                     LDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESG
                     LIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEY
                     CPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKL
                     DQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFL
                     FAKPMPAVAFERWYKRYLKRA"
BASE COUNT         3300 a         3058 c         3271 g         3353 t
ORIGIN      
        1 attttttctt cacacctata cactaaggct ataaatgata tagtggttat agttagcacc
       61 ttttttatta ttaaatcgta ttagtcaccc gccaggtgtg acgaaaaaac gatgttctga
      121 tggcgtctaa gtggatggtt taacatgaaa ttacaacaac ttcgctatat tgttgaggtg
      181 gtcaatcata acctgaatgt ctcatcaaca gcggaaggac tttacacatc acaacccggg
      241 atcagtaaac aagtcagaat gctggaagac gagctaggca ttcaaatttt ttcccgaagc
      301 ggcaagcacc tgacgcaggt aacgccagca gggcaagaaa taattcgtat cgctcgcgaa
      361 gtcctgtcga aagtcgatgc cataaaatcg gttgccggag agcacacctg gccggataaa
      421 ggctcactgt atatcgccac cacgcatacc caggcacgct acgcattacc aaacgtcatc
      481 aaaggcttta ttgagcgtta tcctcgcgtt tctttgcata tgcaccaggg ctcgccgaca
      541 caaattgctg atgccgtctc taaaggcaat gccgatttcg ctatcgccac agaagcgctg
      601 catctgtatg aagatttagt gatgttaccg tgctaccact ggaatcgggc tattgtagtc
      661 actccggatc acccgctggc aggcaaaaaa gccattacca ttgaagaact ggcgcaatat
      721 ccgttggtga catatacctt cggctttacc ggacgttcag aactggatac tgcctttaac
      781 cgcgcagggt taacgccgcg tatcgttttc acggcaacgg atgctgacgt cattaaaact
      841 tacgtccggt tagggctggg ggtaggggtc attgccagca tggcggtgga tccggtcgcc
      901 gatccggacc ttgtgcgcgt tgatgctcac gatatcttca gccacagtac aaccaaaatt
      961 ggttttcgcc gtagtacttt tttgcgcagt tatatgtatg atttcattca gcgttttgca
     1021 ccgcatttaa cgcgtgatgt cgttgatgcg gctgtcgcat tgcgctctaa tgaagaaatt
     1081 gaggtcatgt ttaaagatat aaaactgccg gaaaaataat ttcttgcgtt attttcggca
     1141 ccttttatgt agcgaaggtg ccggaatata ttctcttttg ttacttattt ttataccgtg
     1201 cacaatattt ttatccctca tatttatagg gtaaattacc tgtaaagtag tgtctaatta
     1261 cccgcctcgc aaattccagt tttcaaatat ctatttcagg tcaaaagatt gaattattca
     1321 ctggagacga ttcgtaaatt cgctggattt ttgactaaag tttctttagg atttgtctca
     1381 tcgtatgatt aattacacca atcgttcaac gtcttgctga taagtgatgg cgattatatg
     1441 aggttagcaa tgccttctgg aaatcaggaa ccccgccgcg atcctgaatt aaaacgtaaa
     1501 gcctggctgg cggtttttct tggttctgca cttttctggg tggttgtcgc actgctgatt
     1561 tggaaagtgt ggggataact atggtcggtc aggagcaact ggagtcgtca ccattatgcc
     1621 agcatagtga caatgaaaca gaaacgaaac gggaatgttc cgtcgttatt ccagatgact
     1681 ggcaactaac atcgcagcag caagccttta tagaactgtt tgctgaagat gatcagccga
     1741 aacaataatt atcatcattc ttattaccca tttttaatga attaaagggc ttttaataca
     1801 ccgcagcaat aacagcttga gttatctcaa cacaaaataa taaccgttaa gggtgtagcc
     1861 tatgatcaac acaaatatga aatattggtc ctggatgggc gcgttttctc tgtcgatgct
     1921 cttctgggcc gaactcctct ggatcattac tcactgatcc ttgaccccgc tgcggcgggg
     1981 ttgtcatttg ctttgccaca aggtttctcc tcttttatca atttgggttg ttatcaaatc
     2041 gttacgcgat gtttgtgtta tctttaatat tcaccctgaa gagaatcagg gcttcgcaac
     2101 cctgtcatta aggaggagct atgtcgtcaa ccctacgaga agccagtaag gacacgttgc
     2161 aggccaaaga taaaacttac cactactaca gcctgccgct tgctgctaaa tcactgggcg
     2221 atatcacccg tctacccaag tcactcaaag ttttgctcga aaacctgctg cgctggcagg
     2281 atggtaactc ggttaccgaa gaggatatcc acgcgctggc aggatggctg aaaaatgccc
     2341 atgctgaccg tgaaattgcc taccgcccgg caagggtgct gatgtaggac tttaccggcg
     2401 tacctgccgt tgttgatctg gcggcaatgc gcgaagcggt taaacgcctc ggcggcgata
     2461 ctgcaaaggt taacccgctc tcaccggtcg acctggtcat tgaccactcg gtgaccgtcg
     2521 atcgttttgg tgatgatgag gcatttgaag aaaacgtacg cctggaaatg gagcgcaacc
     2581 acgaacgtta tgtgttcctg aaatggggaa agcaagcgtt cagtcggttt agcgtcgtgc
     2641 cgccaggcac aggcatttgc catcaggtta acctcgaata tctcggcaaa gcagtgtgga
     2701 gtgaattgca ggacggtgaa tggattgctt atccggatac actcgttggt actgactcgc
     2761 acaccactat gatcaacggc cttggcgtgc tggggtgggg cgtgggtggg atcgaagcag
     2821 aagccgcaat gttaggccag ccggtttcca tgcttatccc ggacgtagtg ggctttaaac
     2881 ttaccggtaa attacgtgaa ggtattaccg ccacagacct ggttctcact gttacccaaa
     2941 tgctgcgcaa acatggcgtg gtggggaaat tcgtcgaatt ttatggtgat ggtctggatt
     3001 cactaccgct ggcggatcgc gccaccattg ccaatatgtc gccagaatat ggtgccacct
     3061 gtggcttctt cccaatcgat gctgtaaccc tcgattacat gcgtttaagc gggcgcagcg
     3121 aagatcaggt tgagttggtc gaaaaatatg ccaaagcgca gggcatgtgg cgtaacccgg
     3181 gcgatgaacc gatttttacc agtacgttag aactggatat gaatgacgtt gaagcgagcc
     3241 tggcagggcc aaaacgccca caggatcgcg ttgcactgcc cgatgtacca aaagcatttg
     3301 ccgccagtaa cgaactggaa gtgaatgcca cgcataaaga tcgccagccg gtcgattatg
     3361 ttatgaacgg acatcagtat cagttacctg atggcgctgt ggtcattgct gcgataacct
     3421 cgtgcaccaa cacctctaac ccaagtgtgc tgatggccgc aggcttgctg gcgaaaaaag
     3481 ccgtaactct gggcctcaag cggcaaccgt gggtcaaagc gtcgctggca ccgggttcga
     3541 aagtcgtttc tgattatctg gcaaaagcga aactgacacc gtatctcgac gaactggggt
     3601 ttaaccttgt gggatacggt tgtaccacct gtattggtaa ctctgggccg ctgcccgatc
     3661 ctatcgaaac ggcaatcaaa aaaggcgatt taaccgtcgg tgcggtgctg tccggcaacc
     3721 gtaactttga aggccgtatc catccgctgg ttaaaactaa ctggctggcc tcgccgccgc
     3781 tggtggttgc ctatgcgctg gcgggaaata tgaatatcaa cctggctgct gagcctattg
     3841 gtcatgatcg taaaggcgac ccggtttatc tgaaagatat ctggccatcg gcacaggaaa
     3901 ttgcccgtgc ggtagaacaa gtctccacag aaatgttccg taaagagtac gcagaagttt
     3961 ttgaaggcac agcagagtgg aaggaaatta acgtcacacg atccgatacc tacggttggc
     4021 aggaggattc aacctatatt cgcttatcgc ctttctttga tgaaatgcag gcaacaccag
     4081 cacctgtgga agatattcac ggtgcgcgga tcctcgcaat gctgggggat tcagtcacca
     4141 ctgaccatat ctctccggcg ggcagtatta agcccgacag cccggcgggt cgatatctac
     4201 aaggtcgggg tgttgagcga aaagacttta actcctacgg ttcgcggcgt ggtaaccatg
     4261 aagtgatgat gcgcggcacc ttcgccaata ttcgcatccg taatgaaatg gtgcctggcg
     4321 ttgaaggggg gatgacgcgg catttacctg acagcgatgt tgtctctatc tatgatgccg
     4381 cgatgcgcta taagcaggag caaacgccgc tggcggtgat tgccgggaaa gagtatggat
     4441 caggctccag ccgtgactgg acggcaaaag gtccgcgtct gcttggtatt cgtgtggtga
     4501 ttgccgaatc gtttgaacga attcaccgtt cgaatttaat tggcatgggc atcttgccgc
     4561 tggaatttcc gcaaggcgtg acgcgtaaaa cgttagggct aaccggggaa gagaagattg
     4621 atattggcga cctgcaaaat ctacaacccg gcgcgacggt tccggtgacg cttacgcgcg
     4681 cggatggtag ccaggaagtc gtaccctgcc gttgtcgtat cgacaccgcg acggagttga
     4741 cctactacca gaacgacggc attttgcatt atgtcattcg taatatgctg aagtaacaag
     4801 tatttgcttg ccggttattt tgcttccggc aagcaaatta attccacaat gcgagagggt
     4861 tatttgttca gcaaatgacc cattttctcg gctttggtat cgagataatg ttcgttattg
     4921 gggttacgac ctacaatcaa tggtacgcgt tcaacaatat taatccctgc ttcggtcaga
     4981 atttcgactt ttttcgggtt attggttaac aagcggactt cattgacgcc aaggagtttg
     5041 aacatatcag cgcaaagagt gaagtcgcgc tcatcagcgg cgaagcctaa ctggtggtta
     5101 gcctctacgg tatcgtaacc ttgatcctgc agtgcgtaag cgcggatttt attcagcaga
     5161 ccaatgttac gaccttcctg acggtgatac agcaaaatac cacggccttc ctcggcaatt
     5221 tgcgtcaatg ccgcttcgag ctggaagcca caatcgcagc gcaagctgaa cagggcgtca
     5281 ccggtcagac attcggaatg gacgcgcgca agtaccgggg tatgcccgga aatatcgcca
     5341 tagactagcg cgacatgatc gtgtccggtt gccagttctt caaatcccac catcaggaaa
     5401 tcgccccatg gggttggcag tttggcttct gccacacgtt taagctgcat gaaattctcc
     5461 agataatgct ggttctgtat tggcttattt tgccataacg agaaggggtt cacctaatca
     5521 cgacgcgtcg atcgttcacg gaatggcaca aatctgtcaa tttttcctgg aactggcgtt
     5581 ttcagttatg attgtgggac ttatcaaaaa ggagaggcca tgcgttcgat tgccagacgt
     5641 accgcagtgg gagctgcact attgcttgtc atgccagtag ccgtatggat ttctggctgg
     5701 cgttggcaac ctggagaaca aagttggcta ctaaaagcgg ctttttgggt tactgaaact
     5761 gtcacccagc cctggggcgt cattacacat ttgattttat tcggctggtt tctctggtgt
     5821 ctgcgttttc gcattaaggc tgcctttgta ttatttgcca ttctggcggc cgcaatcctt
     5881 gtgggacaag gcgttaaatc ctggatcaaa gacaaagtcc aggaaccacg accttttgtt
     5941 atctggctgg aaaaaacaca tcatattccg gttgatgagt tctacacttt aaagcgagca
     6001 gaacgcggaa atctagtgaa agaacagttg gctgaagaga aaaatatccc acaatatttg
     6061 cgttcacact ggcagaaaga gacggggttt gcctttcctt ccggtcacac gatgtttgct
     6121 gccagttggg cactgctggc cgttggtttg ctgtggccgc gtcggcgaac gttaaccatt
     6181 gctatcttgc tgctctgggc aacgggagtc atgggaagcc gcctgctgct cgggatgcat
     6241 tggccacgcg atctggtagt agctacattg atttcgtggg cgctggtggc ggtggcaacg
     6301 tggcttgcgc aacgaatttg tgggccatta acaccacctg cggaagaaaa tcgcgaaata
     6361 gcgcaacgag aacaagaaag ttaacgctgg ttgattttcc gaatttagcc cttaaatcat
     6421 caacaatgcg cgtggatgcc atttcgcaga cggcgcgaaa atggtacttt aaagggctat
     6481 tgcggtaagt tgaccataat ttattcgctc taaccacata acgggaagta atgtgaaata
     6541 tttactcatt ttcttactgg tgttagcgat cttcgtgatt tcggtcacgt tgggtgcgca
     6601 gaacgatcaa caggtgacgt ttaattatct gttagcgcaa ggggagtacc gtatttccac
     6661 attgctggcg gtattgtttg ctgcggggtt tgctatcggt tggttgattt gtggcctgtt
     6721 ctggctgcga gttcgtgttt ccctggcgcg cgctgaacgt aaaataaagc gactggaaaa
     6781 ccagctttca cccgcgactg acgtggctgt agtgccgcac tcgtcagcgg cgaaggaata
     6841 actttctatg ctggagttgt tgtttctgct tttgcctgta gccgctgcct atggctggta
     6901 tatgggccgc agaagtgcgc aacaaaacaa gcaagatgaa gccaaccgct tgtcgcgtga
     6961 ttacgtagcg ggggttaact tcctgcttag taatcaacag gataaagcgg tagacctgtt
     7021 tctcgatatg cttaaagagg atacaggcac cgttgaagcc caccttacgc tcggaaacct
     7081 gttccgttcg cgtggcgaag ttgatcgcgc tattcgcatc catcagaccc taatggaaag
     7141 cgcctcgctg acctatgaac agcgtctgtt ggcgattcaa caactagggc gtgattacat
     7201 ggccgccggg ttatacgacc gcgcggaaga catgttcaat cagctgaccg atgaaactga
     7261 cttccgcatt ggcgctctgc aacagttgct acaaatctac caggctacca gtgagtggca
     7321 gaaagcaatt gatgttgccg aacgcctggt gaagctgggt aaagataaac agcgcgtcga
     7381 aattgcccat ttctactgtg agttagccct gcagcatatg gccagcgacg atctcgatcg
     7441 tgccatgacc ttgctaaaaa aaggggcggc ggcagataaa aacagagccc gcgtatccat
     7501 catgatggga cgcgtgttta tggcgaaagg agaatacgcc aaagccgtcg aaagtttgca
     7561 acgcgtgata tcccaggaca gagaactggt cagcgaaacg ctggaaatgt tgcaaacctg
     7621 ctatcagcag ttgggtaaaa ctgccgaatg ggcagaattc ctgcaacgcg cggtggaaga
     7681 gaacaccggt gccgatgctg aattgatgct tgctgatatc atcgaagcgc gcgacggtag
     7741 tgaggccgca caggtctata ttacgcgcca gcttcagcgt catccgacca tgcgtgtgtt
     7801 ccataagtta atggattacc acttaaatga agcggaagaa gggcgtgcca aagagagcct
     7861 gatggtgctg cgtgacatgg ttggcgaaaa ggtacgtagt aagcctcgtt atcgctgcca
     7921 gaaatgtggt tttaccgcat acaccctcta ctggcattgt ccgtcttgtc gggcctggtc
     7981 aaccattaaa ccgattcgcg gtcttgatgg cctgtaattt ttaaaaaaat ccgactttag
     8041 ttacaacatg ctagttattg atgttccatt gtgctccggc aacgacggag cagaaaaagc
     8101 ctgccagggg aaaaatcgca actgttaatt ttttatttcc acgggtagaa tgctcgccgt
     8161 ttacctgttt cgcgccactt ccggtgccca tcatcaagaa ggtctggtca tgacgttaac
     8221 tgcttcatct tcttcccgcg ctgttacgaa ttctcctgtg gttgttgccc ttgattatca
     8281 taatcgtgat gacgcgctgt cctttgtcga caagatcgac ccacgcgatt gtcgtctgaa
     8341 ggtcggcaaa gagatgttta cattgtttgg gccacagttt gtgcgcgaac ttcaacagcg
     8401 tggttttgat atctttcttg acctgaaatt ccacgatatt cctaacactg cagcgcacgc
     8461 tgtcgctgct gcagctgact taggcgtgtg gatggtgaat gttcatgcct ctggtggggc
     8521 gcgtatgatg accgcagcgc gtgaggcact ggttccgttt ggcaaagatg caccgctttt
     8581 gattgctgta acagtgttga ccagcatgga agctagcgac ctggccgatc ttggcgtgac
     8641 actgtcacct gcagattatg cagaacgtct ggcggcactg acgcaaaaat gtggccttga
     8701 tggtgtggtg tgttctgctc aggaagctgt gcgctttaaa caggtattcg gtcaggagtt
     8761 caaactggtt acaccgggca ttcgtccgca ggggagtgat gctggtgacc agcgccgcat
     8821 tatgacgcca gaacaggcgt tggcggctgg tgttgattat atggtgattg gtcgcccggt
     8881 aacgcaatcg gtagatccag cgcaaacact gaaagcgatc aacgcctctt tacagcggag
     8941 tgcatgatga gtgattccaa cagccgtctg gtctactcaa cggaaaccgg acgtattgat
     9001 gagccaaaag cggccccagt acgccctaaa ggcgatggtg tggtgcgtat tcagcgtcag
     9061 accagtggac gtaaaggtaa gggcgtttgc ctgattaccg gtatcgatct cgatgatgcc
     9121 gaactgacaa aacttgcagc ggaactgaag aaaaaatgcg gctgcggcgg agcagttaaa
     9181 gatggagtta ttgaaatcca gggcgataag cgtgatttat taaaatcact acttgaagcg
     9241 aaagggatga aggtaaaact cgcaggcggt taacataaaa agccacggat atatccgtgg
     9301 ctttcgaata ttttactgtg tgtattattc agttatttcg tactgaacaa aatcaagcgt
     9361 attataattg cgagtcgata atcgacattt atttacgatt atttaccgac ctggtgacca
     9421 ataacaccac cgacagctgc accacctaat gtacccaacg tactgccatc ggtcagtact
     9481 gcaccgccta atgcccctgc acccgcgccg attgcggtgt tgcggtcccg tttagaccag
     9541 ttagaacagg cactcagaga cattgccaaa gtaattgcca gaacagccgc ggtcattttt
     9601 ttgctcgtta caaacataat actctctcct gaatttatga ttcacggaag taagctctct
     9661 ataactataa tagctaagaa taagcctggt gaaattattc cgtgaaatct gctcgcgcgc
     9721 agggttatat cacgcaggtg ataatgactt cctgttatat cgctgataat aattttatat
     9781 cttaagcgtg ttaataacag gtaaatagtc ttaattatca accaggaatc atcttagagc
     9841 ggatgatttg ccaaactgca aatcatccgt agagaaggga aatggttaaa tgtcaacgac
     9901 gtgaacggtg agtttactgt gctcaagatg catcagatcg ctggcgcgta ttttcgaatc
     9961 ggtaatcacg cgattgaatc gctcaacggg accgatggag tatgaatgta cagcaccaaa
    10021 tttcgagctg tcagtcagga ctatcacttc gcactctttt tccagcacgg cattgaccac
    10081 atcggtacgc atcatatcgc gaccggtgaa tccagtttca ggttgccagc catcaatacc
    10141 aataaatgct ttgctgaaat gcacctgctg gatgcactgg cgtgtcaacg ggccaaccat
    10201 actttcgctt tttttctggt acacgccacc gagcaaaatg acttcacaag gcgcgtcttt
    10261 cagcaaatgc gcgatgtagc tgctgaccgt gatgatagtg acatttttct tctgctcccc
    10321 cagagtccgg gcgagcaggg cattgctgct gccattttcg ataaagatgg tttcgcccgg
    10381 ttgaaccagt gacgcggcaa actcggcgag ttcacgcttc agcgtatagt tgctcatcat
    10441 acgggtttcg acgtcatcac tatcaagcga aactgcaaag ccatgtgcac ggcggaggta
    10501 actcagtttt tcgagggtgt tgagatcctg gcgaatggta acttcagaaa ctccagtggc
    10561 ttttgccaga tcggttacgc taacctgacc ctggtcaatg accatctgta gaatagtttg
    10621 ttgtcgggaa ttcatcgctg taattcttat aacgttataa tactaaataa aaaaatactg
    10681 acgcgccggg catcctcaaa taggaaaacc tgaaggcacg attgttaaat ctcccacggt
    10741 gccttcggga tgtctggcgt agattcagca acctggcgca agagttctgc tttaagtatc
    10801 tcgagattat ggatcgcaga gtggtaatcg cctgccacaa ggatatctaa cacaatatca
    10861 atacgttcgg caacgcgctg ggcatcaaat tcagacatca aggacatcct tatagcaaaa
    10921 gtggaaaatg aataatgcaa aaattgccgc taaaagagaa gtgtttaaca gcaacggcta
    10981 attatcatcc aggaatacga tatataatga cgggatatag cgctaagtat atatattcat
    11041 ctacttatgc gcgcttcaga tagcgtttat accagcgttc gaaggcgacg gcgggcatcg
    11101 gtttggcaaa caaaaatcct tgccgctcat tgatcccgtt cttggttaaa aaagcatctt
    11161 cctttgcact ctctacacct tcggcgatca cctgaagatt caatgcctgg gccacagcga
    11221 cgatcgcccg gaccagtgac tgcgagacag gttgtttgtg aatatctcga acaaaaacct
    11281 ggtcaagttt gatggcatcg atcggaaagc gcgccagttg cgaaagtgaa gagtagccgg
    11341 taccaaaatc atccagatgc acttgcgcac ctagttggct aaattgttga ataacagaca
    11401 gtgccagttc atcattctca atcagacaac tctctgtcag ttcaacatct atagggcagt
    11461 attcaaaatt gagttcctgg agaacctgtt tcagggcggt gaaaatggtt tgatcggcga
    11521 gctgacgtgc agaaatattt accgccactc gcaggtttat gcctttatcc cgccactttg
    11581 ccacctggcg tacgacatcg agaatcaccc aacggcctaa aggcacaatt agccctgact
    11641 cttcggcgta ggaaatgaag tccaacggtg gaatcaaccc acgttcaggt gactgccaac
    11701 gtactagtgc ttccagactg cgcacttcgc cacgccaggt gattttcggt tgatagtgaa
    11761 taaccaactg atcgttttcc agtgctttac gcaagttggt atccagccag agatattcaa
    11821 atacccgttg attcatttct ggggtaaaaa cgcaaaattg tcctcgtccg ccttccttcg
    11881 ctgtgtacat tgctgtgtcg gcgtgacgaa taatagccgt gctgtctgaa ccatgttcgg
    11941 gagagagtgc aatacctact gaacagctgg tataaacttc aattaaacca atgcgaaagg
    12001 ggagccgtaa gcgggtcaaa attcgtgatg ccattgcttc cagcgcgctt tgtgaggtgt
    12061 tggatgccag taccagaaac tcatccccac ctggacgcgc caacacctgg tcatgttcga
    12121 gacagcttaa aatagccaat gacacgtcgc gtaataactg gtcaccaaac aaatgcccat
    12181 aggcgtcgtt gacctttttg aaattatcca aatcaagata cacaacccca actttattgt
    12241 tatctgcatg attaatagcg tgatcgatta aatcctgcat tgcgttacga ttcggcagtc
    12301 cggtgatact gtcggtattt gccagaatac gcagtcgctc ctgagcgcgg cgctcttcgg
    12361 taatgtcggt gccggaacag attaaaaaaa tctcgctttt gccactgccg ctgtggacaa
    12421 atttattgcg aaacagaaac agccgctggc ctttacatgt tggtatccac agttcgactt
    12481 catatgcatt gccgcttcga aaaaatacac ggttattgcg cctggatgcc gcagcttcac
    12541 gacggctcat aaacagttta aacacgcttt ggccaatgac gtcgtgttct ttcaacccag
    12601 tgtaatcttc acataaccga ttgaagcgtt ggatattccc ccggctgtcg agaatcacta
    12661 ttgcggaatg tgcttcagaa actacctgct cagcaaagga aagcccgtgt gataaatcac
    12721 gagcaactgc cggtgtgtca tgccatgcag acgcgttgcc agcccattcc cgtttattga
    12781 tttttcgtcc taccagatgc acagaaagat cgctctcatc gacggtcaga ctcatcatca
    12841 ggctggaggt gatgaccgtc atttccctga tgcgagcagc ctgttcggca gataactgca
    12901 aagtacgatc aggttctgtg gtttcggtgg tagaaaagcg caaaacatcg ctgctttccg
    12961 tcaaccgcca gtatggattg tg
//
LOCUS       DAJVUY010000118        12952 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.118, whole genome shotgun sequence.
ACCESSION   DAJVUY010000118 DAJVUY010000000
VERSION     DAJVUY010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12952
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.118"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(234..1574)
                     /gene="fadL"
                     /locus_tag="OQQ72_002995"
     CDS             complement(234..1574)
                     /gene="fadL"
                     /locus_tag="OQQ72_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HCS2012647.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            1946..2230
                     /locus_tag="OQQ72_002996"
     CDS             1946..2230
                     /locus_tag="OQQ72_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HCS2012648.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2410..3720
                     /gene="fadI"
                     /locus_tag="OQQ72_002997"
     CDS             2410..3720
                     /gene="fadI"
                     /locus_tag="OQQ72_002997"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HCS2012649.1"
                     /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFACEVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGAWMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3720..5864
                     /gene="fadJ"
                     /locus_tag="OQQ72_002998"
     CDS             3720..5864
                     /gene="fadJ"
                     /locus_tag="OQQ72_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HCS2012650.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVSERCVM
                     LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6067..6552
                     /gene="sixA"
                     /locus_tag="OQQ72_002999"
     CDS             6067..6552
                     /gene="sixA"
                     /locus_tag="OQQ72_002999"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HCS2012651.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7227..7487
                     /locus_tag="OQQ72_003000"
     CDS             7227..7487
                     /locus_tag="OQQ72_003000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS2012652.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7494..7790
                     /locus_tag="OQQ72_003001"
     CDS             7494..7790
                     /locus_tag="OQQ72_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2012653.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7872..10514
                     /gene="yfcU"
                     /locus_tag="OQQ72_003002"
     CDS             7872..10514
                     /gene="yfcU"
                     /locus_tag="OQQ72_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HCS2012654.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     YTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10534..11286
                     /locus_tag="OQQ72_003003"
     CDS             10534..11286
                     /locus_tag="OQQ72_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS2012655.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHTSVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11302..11811
                     /locus_tag="OQQ72_003004"
     CDS             11302..11811
                     /locus_tag="OQQ72_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2012656.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11808..12296
                     /locus_tag="OQQ72_003005"
     CDS             11808..12296
                     /locus_tag="OQQ72_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2012657.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFDGTLMSPPACSISGGQTIE
                     VQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12293..12832
                     /locus_tag="OQQ72_003006"
                     /pseudo
     CDS             12293..12832
                     /locus_tag="OQQ72_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416836.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
BASE COUNT         3262 a         3086 c         3438 g         3166 t
ORIGIN      
        1 gtatcctgga aatgcagaaa agtaaactct ttgagaagga cgagcagaac gcctgaaaat
       61 atgcctttcc cttcaggttt gtctgtggat accgcttatt gatttgaaag ggcaagctgc
      121 caacaggctg tttgcaaaac tcaggaggta agcaatgagg acactacttt cggtgaagtg
      181 ggggagttaa agtcacctgc tatgcaggtg actttatcca ggcgaacgcg ttatcagaac
      241 gcgtagttaa agttagtacc gaacagccag gctttacctt cagactcgaa ctggtatggg
      301 ccttcgttaa ttttcacgct ctgaccgtgc atataagaaa caccaacgtc gactgaagca
      361 tctttattaa atgcgtaagt cgtacctgca ctcagccaga aacggtcctg gtccggaatg
      421 gagatagaac gattctgagc cggaactggg ctgtcatcaa aggcgatacc ggtacggaag
      481 gtccagttat catcgtagta ataagtggta cccaacgcga tgcggtaagc atctttaaag
      541 ccttcatgtt tctggaacag cgtgttgcca ctggttgagg tcgctttcag ctgctggaac
      601 tgactccagc tggtgtaagc caggctatag tgaatcgccc actgtggatc aacacggtta
      661 taacctgaca cttcccacat ttcaggcagg ttcagcgtca gataacccga ttgcgttgcg
      721 ccacctgtcg cggtaggaat tggcaaaccg tagttattaa acgcacgatt aagatcgctg
      781 ctgtagttac ctttgaagtc aattttcact tcagaacggt aggtcagtgc atagcggtta
      841 tttttatcca gttcatacag gattccggcg ttccagccaa agccccactg gttaccgttc
      901 agatgagcga ttttggtatt actgtcgata ccgttggcgg tagctgccaa tgcttgccct
      961 tgaggagttt gcccggcagg agattgcata atctgaccag caaccaactg ccccagatcg
     1021 cctgcgaaac gttcaatttt cgcgcgagcg tagacggcgt tgaaaccaag accaaagctc
     1081 catgcattat ttaagcgata cgcaccgctt aagttcaggt tcatggtttc aaggtcagtt
     1141 gtacccccga cagagccgcc tgcataagta tcattaaact ctgttgccag accatagtta
     1201 gaggtaatag aagcgcccca accaaattgg tcgttaatcg gtgcaacaaa gtgcatgttc
     1261 ggaacccatg ccgtaggcgc gatgttatcg gctttcaggc tacgaccaga cggagacgtt
     1321 ccgctgatat tcacatccgg gtcaatataa accgcacccg cagaaaatgt cgggcggtca
     1381 aacatggtaa tcaatgcggg gttacggcta acgttacctg catcatcggc aattgcgcct
     1441 tcccctgaat aagcccggcc caggccagag gaagaaaatt cgtttaactg aaagcctgcc
     1501 gaccaggcct gggtggagat aagtgccact gcgactgcga gagcagactt tgtaaacagg
     1561 gttttctggc tcatgaccat aacctcaatg atttattttt atacaaacta tgttacgtgc
     1621 tgtaacagga gcgcgaagtg tagggtctga ggtacatctt agaaatcaga ccagtggcga
     1681 gagtataggt cggaccagct ggaatgttgc aagtatgttt ccatcttttt tcaaatatga
     1741 tctaagaaac gcgatccagc tggcaaaatt tggaggttgc gcactcgcgg attcgggtga
     1801 attttgtttt agatcatttt taagtgtgat ttcggtcact tatccgattt tgcagaatta
     1861 acaactggag cagcactttc cggaagcgta aaatatccac aacgtttatc tggcaccttg
     1921 ggtgcacata cagaggaaat caacgatgag taaatgtagt gctgatgaaa ccccggtttg
     1981 ctgctgtatg gatgttggca ccattatgga caactccgac tgcaccgcgt cttacagccg
     2041 cgtgtttgca aaccgcgcag aagcagaaca aacgctggcg gcgttgactg aaaaagcccg
     2101 tagcgtggaa tccgaaccgt gcaaaatctc cccgactttc actgaagagt ctgacggtgt
     2161 gcgcctggat atcgatttca cttttgcctg cgaagctgaa atgctgatct tccagctggg
     2221 tctgcgttaa ttcctctcgg gtacgttcgc ccctgtcagt tgctggcagg ggcgttttct
     2281 tttctttctc ctgtcttcac tgtgtcatag ctcccacttt cctttttctc cgcttggcta
     2341 aatgtaaaaa aatggttaag actataatca ggtcagacca ctttatttat ttttttacag
     2401 gggagtgtta tgggtcaggt tttaccgctg gttacccgcc agggcgatcg tatcgccatt
     2461 gttagcggtt tacgtacgcc ttttgcccgc caggcgacgg cttttcatgg cattcccgcg
     2521 gttgatttag ggaagatggt ggtaggcgaa ctgctggcac gcagcgagat ccccgctgaa
     2581 gtgattgaac agctggtctt tggtcaggtc gtacaaatgc ctgaagcccc caacattgcg
     2641 cgtgaaattg ttctcggtac cggaatgaat gtgcataccg atgcttacag cgtcagccgc
     2701 gcttgcgcta ccagtttcca ggcggttgca aacgtcgcag aaagcctgat ggcgggaact
     2761 atccgagcgg ggattgccgg tggggcagat tcctcttccg tattgccaat tggcgtcagt
     2821 aaaaaactgg cgcgcgtgct ggttgatgtc aacaaagctc gaaccatgag ccagcgcctg
     2881 aaactcttct ctcgcctgcg tttgcgcgat ttaatgcccg taccgcctgc agtagcagaa
     2941 tattctaccg gcttgcggat gggtgacacc gcagagcaaa tggcgaaaac ctacggcatc
     3001 acccgagaac agcaagatgc attagcgcac cgttcgcatc agcgtgccgc tcaggcatgg
     3061 tcagacggaa aactcaaaga agaggtgatg actgccttta tccctcctta taaacaaccg
     3121 cttgtcgaag acaacaatat tcgcggtaat tcctcgcttg ccgattacgc aaagctgcgc
     3181 ccggcgtttg atcgcaaaca cggaacggta acggcggcaa acagtacgcc gctgaccgat
     3241 ggcgcggcag cggtgatcct gatgactgaa tcccgggcga aagaattagg gctggtgccg
     3301 ctggggtatc tgcgcagcta cgcatttact gcgattgatg tctggcagga catgttgttc
     3361 ggtccggcct ggtcaacacc gctggcgctg gaacgtgccg gtttgacaat gagcgatctg
     3421 acattgatcg atatgcacga agcctttgca gctcagacac tggcgaatat tcagttgctg
     3481 ggtagtgaac gttttgcttg tgaagtactg gggcgtgcac atgccactgg cgaagtggac
     3541 gatagcaaat ttaacgtgct tggcggttcg attgcttacg ggcatccctt cgcggcgacc
     3601 ggcgcgtgga tgattaccca gacattgcat gaacttcgcc gtcgcggcgg tggatttggt
     3661 ttagttaccg cctgtgctgc cggtgggctt ggcgcggcaa tggttctgga ggcggaataa
     3721 tggaaatggc atcagcgttt actcttaatg ttcgtctgga caacattgct atcatcacca
     3781 tcgacgtacc ggatgagaaa atgaataccc tgaaggcgga atttgcctcg caggtgcgcg
     3841 ccattattaa gcaactccgt gaaaacaaag agttgcgcgg cgtggtgttt atctccgcga
     3901 aaccggacaa ttttatcgcc ggagcagaca tcaacatgat cggcaactgc aaaacggtgc
     3961 aagaagcgga agctctggcg cggcagggcc aacagttgat ggcggagatt catgctttgc
     4021 ccattccggt tatcgcggct attcatggcg cttgcctggg tggtgggctg gagttggcgc
     4081 tggcgtgcca cggtcgcgtt tgtactgacg atcctaaaac ggtgctcggt ttgcctgaag
     4141 tacaacttgg attgttaccc ggttcaggcg gcacccagcg tttaccgcgt ctgataggcg
     4201 tcagcacaac attagagatg atcctcaccg gaaaacaact tcgggcgaaa caggcattaa
     4261 agctggggct ggtggatgac gttgttccgc actccatttt gctggaagtc gctgttgagc
     4321 tggcgaagaa ggatcgccca tcttcccgcc ctctacctgt acgcgagcgt attctggcgg
     4381 ggccgttagg tcgtgcgctg ctgttcaaaa tggtcggcaa gaaaacagaa cacaaaactc
     4441 aaggcaatta tccggcgaca gaacgcatcc tggaggttgt tgaaacggga ttagcgcagg
     4501 gcaccagcag cggttatgac gccgaagctc gggcgtttgg cgaactggcg atgacgccac
     4561 aatcgcaggc gctgcgtagt atcttttttg ccagtacgga cgtgaagaaa gatcccggta
     4621 gtgatgcacc gcctgcgcca ttaaacagcg tgggaatttt aggtggtggc ttgatgggcg
     4681 gcggtattgc ttatgtcact gcttgtaaag cggggcttcc ggtcagaatt aaagatatca
     4741 acccgcaggg cataaatcat gcgctgaagt acagttggga tcagctggag ggcaaagttc
     4801 gccgtcgtca tctcaaagcc agcgaacgtg acaaacagct ggcattaatc tccggaacga
     4861 cggactatcg cggctttgcc catcgcgatc tgattattga agcggtgttt gaaaatctcg
     4921 aattgaaaca acagatggtg gcggaagttg agcaaaattg cgccgctcat accatctttg
     4981 cttcgaatac gtcatcttta ccgattggtg atatcgccgc tcacgccacg cgacctgagc
     5041 aagttatcgg cctgcatttc ttcagtccgg tggaaaaaat gccgctggtg gagattattc
     5101 ctcatgcggg tacatcagcg caaaccatcg ccactacggt aaaactggcg aaaaaacagg
     5161 gcaaaacgcc cattgtcgtg cgtgacaaag ccgggtttta cgtcaatcgc atcttagcgc
     5221 cttacattaa tgaagctatc cgcatgctga ccaaaggtga acgggtagag cacattgatg
     5281 ccgcgctagt gaaatttggt tttccggtag gtccaatcca acttttggat gaggtaggaa
     5341 tcgacaccgg gactaaaatt attcctgtac tggaagccgc ttatggagaa cgttttagcg
     5401 cgcctgcaaa tgttgtttct tcaattttga acgacgatcg caaaggcaga aaaaatggtc
     5461 ggggtttcta tctttatggt cagaaagggc gtaaaagcaa aaaacaggtc gatcccgcca
     5521 tttacccgct cattggcgca caagggcagg ggcgactctc cgcaccgcag gtttctgaac
     5581 ggtgtgtgat gttgatgctg aatgaagcag tacgttgtgt tgatgagcag gttatccgta
     5641 gcgtgcgtga cggggatatt ggtgcggtat ttggcattgg ttttccgcca tttctcggtg
     5701 gaccgttccg ctatatcgat tctctcggcg cgggcgaagt ggttgcaata atgcaacgac
     5761 tggccacgca gtatggttcc cgttttaccc cttgcgagcg tttggtcgag atgggcgcgc
     5821 gtggggaaag tttttggaaa acaactgcaa ctgacctgca ataagaaggt caaagctata
     5881 tgaatccgcg ctgaatggcg gagtattggt caaaatgtaa acgcatattg actatactta
     5941 cgccattgag gtaaaaaaca gcgtttcatt cggtgaatgg ataaggcaca atgccggcca
     6001 ccgttttctt tctctggttt cagatgaaag aaaatgggcg aatctggtta acaaaagcgg
     6061 tgcaatatgc aagtttttat catgcgtcac ggcgacgcag ccctcgatgc cgccagtgat
     6121 tcggttcgtc ctctgaccac taatggttgt gacgaatctc gcctgatggc gaactggctg
     6181 aaaggtcaaa aagtggaaat cgaacgcgtt ctggtgagcc cgttcctgcg agccgagcaa
     6241 acactggaag aagtagggga ttgtctgaac ctgccttcca gtgcagaagt tctgccggag
     6301 ttaacgccct gcggcgatgt tggtctggtc agtgcctatt tgcaggcgtt gaccaatgaa
     6361 ggtgttgctt cggtactggt gatctctcac ttaccgttag tcgggtatct ggttgccgag
     6421 ttatgtccgg gcgaaacgcc gcctatgttt accacctcgg ccattgccag cgtaacgctt
     6481 gatgaaagcg gaaacggtac attcaactgg cagatgagcc cgtgtaatct gaagatggca
     6541 aaagctatct gatgtgttcc aaattatgcc caatgaggta gattcattgg gcataattgc
     6601 tcatcaggca gcggatatct gtcaacctca ctactatcga agactctcct tatctataaa
     6661 taaaacactt tctacattca ttcggaaatt attcttctgc acgtatcttg attttgccca
     6721 aagttacatg ttgaaatgaa taatgtctgt ttgacactca ttgtcattta ttaatacaga
     6781 taatagagtt gaataatcag gcaggatgta attgaaactt gattaaattc tggctatagt
     6841 gtttatatat tatattgtca aaagtggata aatgccaatc gcattatatg ttcattgttt
     6901 gttttttaag ctgttgatat tcattattga tatactttct attttttcta aatacttatt
     6961 ccgtattttt taaggatgtc cttaagataa tctttcttct gtcaatatat taattaaatc
     7021 tacatttact ctttagtaaa attaaattgc atcaggggtg tggaaacatc actatgcggc
     7081 cccacaccaa cgaatacaat tttctacgac ctgttctttt tggatcgcat gccgtattca
     7141 atggctgggt ataaacattg gctattgact gaatcaatgt attgcaatgt ttatattttt
     7201 aattatttat agtttaagga caaataatga gtaagtttgt taaaacagct attgctgcgg
     7261 caatggtgat gggcgtgttc acctctacgg caacaatcgc tgcgggtaac aacggtactg
     7321 cacgttttta cggcaccatt gaagactcag tgtgttctat cgttccggac gatcacaaac
     7381 tggaagttga tatgggtgat atcggtgccg aaaaactgaa aaataacggc accaccacgc
     7441 cgaaaagttt ccagattcgt ctgcaagatt gcgtatttga tacttaggaa acaatgacca
     7501 ctacctttac tggtaccgtt tcttctgcaa atagcggcaa ttattacacc attttcaata
     7561 ccgataccgg tgcggcattt aacaatgtta gcctggcgat cggtgactct ctgggtacct
     7621 cttacaaaag cggcatgggt attgaccaga aaatagtgaa agacacttct actaataaag
     7681 gcaaagcgaa gcagacactg aactttaaag cctggctggt cggcgcagct gatgcgccag
     7741 atctgggtaa tttcgaagca aataccacct tccagattac ttacctgtaa ggcatacccc
     7801 catagcgaca ctgctatggg ggatttaaat ggattttgac cgaacaagaa taaaaacgga
     7861 tagaaacgtg tatgcctgac cattctcttt ttcgattacg gattcttccg tggtgcattg
     7921 cgctggcaat gtcagggagt tatagtagtg tctgggctga agacgacatt cagtttgatt
     7981 cccgttttct ggaattaaaa ggcgacacaa aaattgatct gaagcgtttt tccagccagg
     8041 gatatgttga gcccggaaaa tacaatttac aggttcaact aaataaacag ccattggcgg
     8101 aagagtacga tatttactgg tatgctggtg aagatgacgc gagcaaaagc tatgcttgtc
     8161 tgacaccgga actggtagcg cagtttggtt taaaagaaga cgtggcgaaa aatctgcaat
     8221 ggagccacga tgctaaatgc ctgaaatccg gtcaactgga aggcatggaa attaaggctg
     8281 atttaagcca gtccgcatta gtcatttcac tgccacaggc ttacctcgaa tatacttatc
     8341 ccgactggga tccgccttca cgttgggatg acggcatctc cgggatcgtc gcggactaca
     8401 gcatcaacgc acaaacccgg cacgaagaaa atggcggtga tgatagtaac gagatcagcg
     8461 gcaacgggac ggtcggggtt aacctggggc cgtggcgtat gcgtgctgac tggcagacta
     8521 actatcaaca tactcgcagt aatgatgacg atgaattcag cggcgatgaa actcaaaaaa
     8581 aatgggagtg gagtcgctac tatgcctggc gggcgttacc atcattaaaa gccaaactgg
     8641 cgctgggcga ggattacctc agatccgata tttttgatgg ttttaactat gttggtggta
     8701 gtgtcagtac tgacgatcaa atgttgcctc ccaatctgcg cggctacgcg ccagacattt
     8761 ccggcgtggc acacaccaca gcaaaagtga ccgtcagcca gatggggcgt gtgatttacg
     8821 aaacgcaggt tccggctgga ccgtttcgta ttcaggatct tggtgattct gtctccggta
     8881 cgttgcatat tcgcattgaa gaacagaacg gccaggtgca ggaatatgac atcagcaccg
     8941 cctcgatgcc atacctcact cgtccaggtc agattcgcta taagatcatg atgggccgtc
     9001 cgcaagagtg gggacaccat gtcgagggtg aatttttttc tggtgctgaa gcttcctggg
     9061 ggatcgctaa cggctggtcg ttatatggcg gcgcactggg agatgaaaac tatcagtctg
     9121 cggcgcttgg cgtcggtcgc gatttgtcta cattcggcgc ggtcgcgttt gatgttactc
     9181 actcgcacac caaactggat aaagacaccg cttatggcaa aggttcgctg gacggtaact
     9241 ccttccgtgt gagttattcc aaagactttg accagctcaa cagccgcgtt acttttgctg
     9301 gatatcgctt ctcggaagag aactttatga ccatgagcga gtatctggat gccagtgaca
     9361 gcggaatggt acgcacgggc aacgacaaag agatgtacac cgccacttat aaccagaact
     9421 tccgcgatgc gggtgtttcg gtttatctca actatacccg ccatacctac tgggatcgcg
     9481 aggagcagat aaactacaac atcatgctct cgcactattt caatatgggc agtattcgta
     9541 atgtcagcat ctcgatgact ggctaccgtt acgagtatga caaccaggcc gacaaaggca
     9601 tgtacatttc gctcagtatg ccgtggggcg acaacagtac cgttagctat aacggtaact
     9661 atggcagtgg gacggacagc agtcaggtcg gttatttcag ccgtgtcgat gacgcgactc
     9721 actatcagtt gaacgtcggc accagtgaca aacacaccag cgttgacggc tattacagcc
     9781 atgatggttc gctggcgcag gttgacctca gtgcgaacta ccatgaaggg caatacacct
     9841 ctgcgggctt gtcgttacag ggcggcgcaa cgcttactgc ccacggtggc gcacttcacc
     9901 gtacccagaa tatgggcggg acacgcttgt tgattgatgc cgatggcgtt gccgatgttc
     9961 cggtggaagg taacggggct gctgtttata ccaatatgtt tggtaaagcc gtcgtttctg
    10021 acgtcaataa ctattaccgc aatcaggcgt atatcgacct caacagattg cctgaaaacg
    10081 ctgaagcaac ccagtcggtg gtgcaagcca cgctaactga aggtgccatt ggctaccgta
    10141 aatttgctgt cattagcgga caaaaagcga tggcggtgct gcgcctgagc gacggcagcc
    10201 atcctccgtt tggcgcagaa gtaaaaaatg ataacgagca gacagtgggc cttgtcgatg
    10261 atgacggcaa tgtttatctg gctggggtga aacctggcga acacatgagt gtgttctgga
    10321 gtggtgttgc gcattgcgat atcaacctgc cggacccgct gcctgccgat ctgtttaacg
    10381 gcttgttact accatgccag cataaaggca atgtagcacc tatcacttcg ccggcggtca
    10441 aaccggcgat tcaggaacag acacagcggg tgacgccaac ggaacctccg acttcaattt
    10501 cagtaaacca gtaacgtgat taaggaatga tccatgttta atctgactaa cactgcaaaa
    10561 atcgttgtcc cggcactggc gctgctggcg acagcggtca gtttctccag ccacacttcg
    10621 gtgacgcccg acaggacacg gctggtgttt aacgaaagcg acaagtccat cagcgtcacg
    10681 ctgcgcaaca acgatcccac actgccttat ctggcgcaga gctggataga ggatgcaaag
    10741 ggcaacaaaa tcagctctcc gcttgcggtg cttccgccag tgcagcgcat cgatgcgatg
    10801 atgaacggcc aggtgaaggt gcaggggctg ccggatatca acaaactgcc ggccgaccgc
    10861 gagagcgtgt tctatttcaa cgtgcgcgaa attccgccga aatcaaataa accgaacaca
    10921 ctgcagattg cgctgcagac gcgtatcaaa ctgttctggc gaccgaaggc gctggagaac
    10981 accagcatga aaagtccgtg gcagcataag gtgacgctca tccgtaacgg ccaggacttc
    11041 accgtcaata acccgacgcc gtactacgtg atcatcagca acgccagcgc taaaaaaggc
    11101 ggcaacccgc cggcgggatt cacaccgctg atgatggagc cgaaaacctc cgcaccgctg
    11161 aatgcgaaga tggacagcgt gccggtgctg acttacatca acgactacgg cgcgcggatg
    11221 ccgctgtact tcaaatgcac cggcaacagc tgccaggtgg atgaagagca gagccgcaaa
    11281 ggctgatgcc gggagggact tatgagtcac aagtttgtag cgggcgcagg gttgctggtg
    11341 ctggccggat ggggcatcag cggtttggct gttgctggca gtgatatcaa acaggtggat
    11401 ctgacgctgc gaatcctagt cgatggaccg ccgccttgct ccgtgaaggg aagcgctgtg
    11461 aaatttggca atgtgataat caacaggatc gatggtacca attaccaaca ggatgcgaaa
    11521 tacaccctca actgcggtaa taaagtcagc gatgacttac ggatgcagct caaaggcaat
    11581 accgccgtga tcaacggaga aacggttctc agcacggata tcgccggcct gggggtgcgg
    11641 atagaaaacg ccgccgacaa ctccctgttt gcagttggtg aaaataactg gacgcctttt
    11701 aatgtcaaca ctcagcctca gctgaaagcg gtgccggtaa aacagagcgg ggtgcaactg
    11761 actccgtcgg agtttaacgc cacgatgacc atggtggtgg attaccaatg aaaaaattcc
    11821 tgctcctttt actgtgcgct ggttgcgggg ctgtgctggc ggcggaagat gacatcacat
    11881 tcgacggtac gctgatgtcg ccgcccgcct gtagcatcag cggcgggcaa accatcgaag
    11941 tgcaatttcg cgatctcatt atcgacagca ttgatggcaa ttatggtcgt cagaaagtgg
    12001 actacgaact gagctgcgac tcggatgtcc gcgatcccga gtggaatatg acactctcct
    12061 ggacggggac tgccacctcc tacaacgact ctgctattga gacggatgta ccgggcttcg
    12121 gaattgagct tcagcatgac ggtcagcgtt ttaagctcaa cgagccgctt tccattaacg
    12181 ccaccgattt tagccagaag ccaaagctgg aggcggtacc ggtcaaagcg gctgatgcgg
    12241 tgctgacgga cacgaccttt tctgcttacg caaccttacg ggtggattac caatgaaaac
    12301 agcacacatt tattcacccg gttatgcgct gttagcaggc ctgctgctga ccgccagcac
    12361 aggagcacag gcagtcgaca acaacctgca tttttacggc aacctgctga gtaaatcctg
    12421 cacgctggtg gtggatggtg ccaacctggc agaaatccat tttcccaccg tcagcaaccg
    12481 ggatttgatg gtatctgggc agtccgcgca tctgccggtt gtgtttaagc tgaaagactg
    12541 caaagggccg gcgggataca acgtcaaagt cacgctgagc ggcaccgaag acagcggtca
    12601 gccgggtttt ctggcagtcg atgacacctc caccgcgcag ggcgtgggga tagggatgga
    12661 aacgctcgac ggcaagcggg tggatattaa caacaccacc ggggcgacct ttgcgcttac
    12721 caacggcaac aatgatatta atttccgggc ctggatctag gcgaaaagcg gtcgtgatgt
    12781 aaccatcggt gatttcaccg ccagcctgac agcaactttt gagtatattt aaaatgaaaa
    12841 tccttcgtca tgttttatgt cttttattgc tgttaatgtt caatacatgc ggccaggcgg
    12901 cgacgaaagt tggtgagtta tatgtgccag ctggtgccag ttcacctgcg ac
//
LOCUS       DAJVUY010000119        12914 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.119, whole genome shotgun sequence.
ACCESSION   DAJVUY010000119 DAJVUY010000000
VERSION     DAJVUY010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.119"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..880)
                     /gene="rarD"
                     /locus_tag="OQQ72_003007"
     CDS             complement(<1..880)
                     /gene="rarD"
                     /locus_tag="OQQ72_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS2012658.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI
                     WVALAIFVMDAIYTQRR"
     gene            complement(932..1399)
                     /locus_tag="OQQ72_003008"
     CDS             complement(932..1399)
                     /locus_tag="OQQ72_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312777.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HCS2012659.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1564..2433
                     /gene="pldA"
                     /locus_tag="OQQ72_003009"
     CDS             1564..2433
                     /gene="pldA"
                     /locus_tag="OQQ72_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HCS2012660.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2566..4395
                     /gene="recQ"
                     /locus_tag="OQQ72_003010"
     CDS             2566..4395
                     /gene="recQ"
                     /locus_tag="OQQ72_003010"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HCS2012661.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMCKLERFGKPFMALIRAHVDGDDEE"
     gene            4459..5079
                     /gene="rhtC"
                     /locus_tag="OQQ72_003011"
     CDS             4459..5079
                     /gene="rhtC"
                     /locus_tag="OQQ72_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HCS2012662.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="OQQ72_003012"
     CDS             complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="OQQ72_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HCS2012663.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5872..6894
                     /gene="pldB"
                     /locus_tag="OQQ72_003013"
     CDS             5872..6894
                     /gene="pldB"
                     /locus_tag="OQQ72_003013"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HCS2012664.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6902..7702
                     /gene="yigL"
                     /locus_tag="OQQ72_003014"
     CDS             6902..7702
                     /gene="yigL"
                     /locus_tag="OQQ72_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HCS2012665.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7778..8677
                     /gene="bioP"
                     /locus_tag="OQQ72_003015"
     CDS             7778..8677
                     /gene="bioP"
                     /locus_tag="OQQ72_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HCS2012666.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTLITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8565..9518)
                     /gene="metR"
                     /locus_tag="OQQ72_003016"
     CDS             complement(8565..9518)
                     /gene="metR"
                     /locus_tag="OQQ72_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HCS2012667.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL"
     gene            9754..12015
                     /gene="metE"
                     /locus_tag="OQQ72_003017"
     CDS             9754..12015
                     /gene="metE"
                     /locus_tag="OQQ72_003017"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HCS2012668.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12300..12545)
                     /locus_tag="OQQ72_003018"
     CDS             complement(12300..12545)
                     /locus_tag="OQQ72_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCS2012669.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
     gene            complement(12535..>12914)
                     /locus_tag="OQQ72_003019"
     CDS             complement(12535..>12914)
                     /locus_tag="OQQ72_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012670.1"
                     /translation="FNPDLAGGPIENLTTDGVTINREGIAIVEKHIARFGHDPINEVM
                     INRLKDIEKGKIPPEQVDLNFYTHECREYQRYCNLGWETGQPDGDAGYALWNHTHTAT
                     LEDYKLKGELNDLYHQDALDYDN"
BASE COUNT         3051 a         3261 c         3442 g         3160 t
ORIGIN      
        1 ttctacgctg cgtataaatc gcatccatca caaaaattgc cagcgccacc caaataaagg
       61 cgaaggtcac catcttatcg gcacccggtt tttcaccata aaacgtcact gccaacagga
      121 acatcagcgt cgggccaata tactggaaga agcctaacgt ggagagacgc aggcgtgtag
      181 cagctgcggt aaaacacaac agcggtacgg tggtgacaat accggcggcg atcagcagca
      241 aattcagcaa catcgggttt tgccccatat ggctggttga gctgtcggca atagcaaaca
      301 gataaatcgc cgccacgggc agcagccaca tggtttcgat taacatgccg gtttgcgctt
      361 caacggcaat tttcttgcgt accagtccgt agaaggcaaa actaaacgcc agccccagcg
      421 cgatgattgg cagcgaacca aaagtccaca actgaaccaa cacgccacat atcgccagaa
      481 tcaccgccag ccattgcatc cggcggaatc gctcgccgag gaaaatcatc cccagcacaa
      541 tgttcaccag cgggttaata aagtaaccaa ggctcgcttc cagcatatgg tgattgttca
      601 ccgcccagat aaacagtagc cagttgccac caatcagcac ggcagagact gccagcataa
      661 aaattttctg tggcgtctga atcagcgttt ttaaatagga ccactggcgg caaatgctca
      721 tcagcaccac cataaagaaa aacgaccaga tcacgcgatg cgtcaggatc tcatcggcgg
      781 gcacgtagta aatcagcttg aagtatgctg gcgcaatacc ccaaataaaa taagcggcaa
      841 gagcgagtaa tacgccctgc cgcgtttgtt ttgcatccat cgggaatact catttttaat
      901 tggtaacagc agtttacctg cttttatgtc ttcaacctac catataggtg gcggtggcac
      961 tggcaatata aagctgttct tcattgtgta attcaacgcg ggcgacggcg actttattgc
     1021 ctgcacgcaa caggctactg gtagcagtaa aacgctcgcc cctgcctggg cgcagataat
     1081 caacgcgaag atcaatggtc cccatccgcg atagccgctg gcgtagttca tcttcactga
     1141 tggtttcgtg gcgggttaag gtacttccca cgcacaccag accggcggcg acatccagcg
     1201 ccgacgcaat gactccgccg tgcaaaatgc tttgcgccca gttacccacc atcatcggct
     1261 gatttttaaa ggccagctgt gcgaactctt tttcgtaacg ctccagctcc atccctaacg
     1321 cgcggttaaa tggcatgtga taaacaaaca tctcacccac taatttcagg gcttgttcag
     1381 cggtcagtac ggcagacata tcatccttac acttcattgg ttaatgaaat gttgatttta
     1441 tgcttctttg ttgttggttt ctactttagg aagggataac taacggcaat ggagttaagt
     1501 atgtaaaata gcccgcagaa aaacattcac cttatcaata attcgttacg gagaacacga
     1561 ccgatgcgga ctctgcaggg ctggttgttg ccggtgttta tgttgcctat ggcagtatat
     1621 gcacaagagg caacggtgaa agaggtgcat gacgcgccag cggtgcgtgg cagtattatc
     1681 gccaatatgc tgcaggagca tgacaatccg ttcacgctct atccttatga caccaactac
     1741 ctcatctaca cccaaaccag cgatctgaac aaagaagcga ttgccagtta cgactgggcg
     1801 gaaaatgcgc gtaaggatga agtaaagttt cagttgagcc tggcatttcc actgtggcgt
     1861 gggattttag gcccgaactc ggtgttgggt gcgtcttata cgcaaaaatc ctggtggcaa
     1921 ctgtccaata gcgaagagtc ttcaccgttt cgtgaaacca actacgaacc gcaattgttc
     1981 ctcggttttg ccaccgatta ccgttttgca ggttggacgc tgcgcgatgt ggagatgggg
     2041 tataaccacg actctaacgg gcgttccgac ccgacctccc gcagctggaa ccgcctttat
     2101 actcgcctga tggcagaaaa cggtaactgg ctggtagaag tgaagccgtg gtatgtggtg
     2161 ggtaatactg acgataaccc ggatatcacc aaatatatgg gttactacca gcttaaaatc
     2221 ggctatcacc tcggtgatgc ggtgttgagt gcgaaaggac agtacaactg gaataccggt
     2281 tacggcggcg cggagttagg cttaagttac ccgatcacca aacatgtgcg cctttatact
     2341 caggtttaca gcggctatgg cgaatcgctc atcgactata acttcaacca gacccgtgtc
     2401 ggtgtaggag ttatgctaaa cgacttgttt tgatgaacgg ttgagtggtt ggcaaatctg
     2461 gaacccagca tccaggatta ccctctcaga gactaaaagc attgcagttt ctcgcgcagg
     2521 cgctgaaaat agcgcctgtt tttatttcag gcaatcgggg tgaatgtggc gcaggcggaa
     2581 gtgttgaatc tggagtccgg agctaaacag gttttacaag aaacctttgg ctaccaacag
     2641 tttcgccccg gccaggaaga aattatcgac actgtgcttt ccggtcgcga ttgcctggtc
     2701 gtcatgccca ccggtggcgg aaaatccctt tgctatcaaa ttcctgcctt attgctaaac
     2761 ggccttaccg tggttgtttc accgctgatt tcgttgatga aagatcaggt ggatcaactg
     2821 caagccaacg gcgtggcggc ggcgtgcctt aactcgacgc aaacccgcga gcagcaactt
     2881 gaagtgatga caggctgccg caccgggcaa attcgtctgc tttatatcgc cccggaacgc
     2941 ctgatgctgg ataactttct tgagcatctg gcgcactgga atccggtgtt attagccgtt
     3001 gatgaagcgc actgtatctc ccaatggggc cacgatttcc gcccggaata tgccgcgctt
     3061 ggtcagttac gccagcgttt cccgaccctg ccgtttatgg cgctgactgc cacagccgac
     3121 gacaccacgc gccaggatat cgtgcgcttg ctggggctga acgatccgct gattcaaatc
     3181 agcagttttg accgtccgaa tattcgctac atgctgatgg agaagttcaa accgctcgat
     3241 cagttgatgc gctacgtgca ggaacagcgc ggtaagtcag gcattatcta ctgcaacagc
     3301 cgcgcgaaag tagaagacac cgctgcgcgc ctgcaaagca agggaattag cgcggcggcc
     3361 tatcatgctg ggctggaaaa taatgttcgc gccgacgtgc aggaaaaatt tcagcgcgat
     3421 gacctgcaaa ttgtggtggc gacggtggcg ttcggcatgg gcatcaataa accaaacgtt
     3481 cgcttcgtgg tccactttga tattccgcgc aatatcgaat cctattatca ggaaaccggt
     3541 cgcgccgggc gtgatggcct gcccgcggaa gcgatgctgt tttacgatcc ggccgatatg
     3601 gcgtggctgc gccgttgcct ggaagagaag ccgcaggggc agttacagga tatcgaacgt
     3661 cataaactca atgcgatggg cgcttttgcc gaagcgcaaa cttgccgtcg tctggtattg
     3721 ctgaactatt ttggcgaagg gcggcaagag ccgtgcggga actgcgatat ctgcctcgat
     3781 ccgccgaaac agtacgacgg ttcaaccgat gctcagattg ccctttccac cattggtcgt
     3841 gtgaatcagc ggtttgggat gggttatgtg gtggaagtga ttcgtggtgc taataaccag
     3901 cgtatccgcg actatggtca tgacaaactg aaagtctatg gcatgggccg tgataaaagc
     3961 catgaacatt gggtgagcgt gatccgccag ctgattcacc tcggcctggt gacgcaaaat
     4021 attgcccagc attctgccct acaactgaca gaggccgcgc gcccggtgct gcgcggcgaa
     4081 tcctctttgc aacttgccgt gccgcgtatc gtggcgctca aaccgaaagc gatgcagaaa
     4141 tcgttcggcg gcaactatga tcgcaaactg ttcgccaaat tacgcaaact gcgtaaatcg
     4201 attgccgatg aaagtaatgt cccgccgtac gtggtgttta acgacgcaac cttgattgag
     4261 atggctgaac agatgccgat caccgccagc gaaatgctca gcgttaacgg cgttgggatg
     4321 tgcaagctgg aacgctttgg taaaccgttt atggcgctga ttcgtgcgca tgtcgatggc
     4381 gacgacgaag agtagtcagc agcataaaaa agtgccagga tgaagactcc gtaaacgttt
     4441 cccccgcgag tcaaatgtat gttgatgtta tttctcaccg tcgccatggt gcacattgtg
     4501 gcgcttatga gccccggtcc cgatttcttt tttgtctctc agaccgctgt cagtcgttcc
     4561 cgtaaagaag cgatgatggg cgtgctgggt attacctgcg gcgttatggt ttgggcaggg
     4621 attgcgttgc ttggcctgca tttgattatc gaaaaaatgg cctggctgca tacgctgatt
     4681 atggttggcg gtggcctgta tctctgctgg atgggttacc agatgctacg cggtgcactg
     4741 aaaaaagagg ctgtatctgc gcctgcacca cagattgagc tggcgaaaag cgggcgcagt
     4801 ttcctgaaag gtttactgac caatctcgct aatccgaaag cgattatcta ctttggctcg
     4861 gtgttctcat tgtttgtcgg tgataacgtt ggcactaccg cgcgctgggg catttttgcg
     4921 ctgatcattg tcgaaacact ggcgtggttt accgtcgttg ccagcctgtt tgccctgccg
     4981 caaatgcgcc gtggttatca acgtctggcg aagtggattg atggttttgc cggggcgtta
     5041 tttgccggat ttggcattca tttgattatt tcgcggtgat gccagacgcg tcttcagagt
     5101 aagtcggata aggcgtttac gccgcatccg acattatttt tcacgcatgc ctcgccgatg
     5161 ctaacagcgc tcccaccagc ataaacaacg agccgaaaat cttattcagc gccttcatct
     5221 gctttggtcc tttaatccat agagcaatcc gttgagcaag ggtggcgtaa ccgatcatca
     5281 caataatatc gactacaata gtggtgacgc cgagcacgat atactgcatc agttgcggct
     5341 gctgtggcat gatgaattgc ggaaatagcg ccgccagaaa cacaatactt ttgggattgg
     5401 tgagattcac aaaaactgcg cgctggaaca aatgtcgacg cgattgagta gaggccagcg
     5461 atttaaggtc aattgcacca gcggcgcgcc actgctggat tcccagccaa atcaagtaag
     5521 ccgcgcctgc ccacttcaac acttcaaacg caatcactga gcgggaaaat agcgtcccca
     5581 aacccacgcc aaccagcaca atatgaatcg ccagtccggt ctgaagccca gcaatagacg
     5641 ccaccgcgcc gcgataaccg tggttgagcg aggtggtcat agtgttgatt gcaccagagc
     5701 ctggcgacag gcttaaaatg atcgatgtca gcaggtaggc aaaccaccat tctaaggtca
     5761 tgatgaactc ccggtgtgtc tatttttgtg ccacaatacg ctactgtcgc agcgttgtgt
     5821 caggcacgct aaaaaaaacg attttacgtg gtttaagagg cagattaccc gatgtttcag
     5881 cagcaaaaag actgggaaac aagagaaaac gcgtttgctg cttttaccat gggaccgctg
     5941 actgatttct ggcgtcagcg tgatgaagca gagtttactg gtgtggatga cattccggtg
     6001 cgctttgtcc gttttcgcgc acagcaccat gaccgggtgg tagtcatctg cccggggcgt
     6061 attgagagct acgtaaaata tgcggaactg gcctatgacc tgttccattt ggggtttgat
     6121 gtcttaatca tcgaccatcg cgggcaggga cgttccggtc gcctgttagc cgatccgcat
     6181 ctcgggcatg ttaatcgctt taatgattat gttgatgatc tggcggcatt ctggcagcag
     6241 gaggtccagc ccggtccgtg gcgtaaacgc tatatactgg cacattcgat gggcggtgcg
     6301 atctccacat tatttctgca acgccatcca ggtgtatgtg acgccattgc gctaactgcg
     6361 ccaatgtttg ggatcgtgat tcgtatgccg tcatttatgg cacggcagat cctcaactgg
     6421 gccgaagcgc atccacgttt ccgtgatggc tatgcaatag gcaccgggcg ctggcgcgcg
     6481 ttgccgtttg ctatcaacgt actgacccac agcagacagc gatatcgacg taacttacgc
     6541 ttctatgctg atgacccaac gattcgcgtc ggtgggccga cctaccattg ggtacgcgaa
     6601 agtattctgg ctggcgaaca ggtgttagcc ggtgcgggtg atgacgccac gccaacgctt
     6661 ctcttgcagg ctgaagagga acgcgtggtg gataaccgca tgcatgaccg tttttgtgaa
     6721 ctccgcaccg ccgcgggcca tcctgtcgaa ggaggacggc cgttggtaat taaaggtgct
     6781 taccatgaga tcctttttga aaaggacgca atgcgctcag tcgcgctcca cgccatcgtt
     6841 gattttttca acaggcataa ctcacccagc ggaaaccgct ctacagaggt ttaaatttct
     6901 tatgtaccag gttgttgcgt ctgatttaga tggcacgtta ctttctcccg accatacgtt
     6961 atccccttac gccaaagaaa ctctgaagct gctcaccgcg cgcggcatca actttgtgtt
     7021 tgcgaccggt cgtcaccacg ttgatgtggg gcaaattcgc gataatctgg agattaagtc
     7081 ttacatgatt acctccaatg gtgcgcgcgt tcacgatctg gatggtaatc tgatttttgc
     7141 tcataacctg gatcgcgaca ttgccagcga tctgtttggc gtagtcaacg acaatccgga
     7201 catcattact aacgtttatc gcgacgacga atggtttatg aatcgccatc gcccggaaga
     7261 gatgcgcttt tttaaagaag cggtgttcaa atatgcgctg tatgagcctg gattactgga
     7321 gccggaaggc gtcagcaaag tgttcttcac ctgcgattcc catgaacaac tgctgccgct
     7381 ggagcaggcg attaacgctc gttggggcga tcgcgtcaac gtcagtttct ctaccttaac
     7441 ctgtctggaa gtgatggcgg gcggcgtttc aaaaggccat gcgctggaag cggtggcgaa
     7501 gaaactgggc tacagcctga aggattgtat tgcgtttggt gacgggatga acgacgccga
     7561 aatgctgtcg atggcgggga aaggctgcat tatgggcagt gcgcaccagc gtctgaaaga
     7621 ccttcatccc gagctggaag tgattggtac taatgccgac gacgcggtgc cgcattatct
     7681 gcgtaaactc tatttatcgt aatcgttctt tatttggtca gttgtcaacc tgatacttcg
     7741 ctacaatgga tactcgttaa tcaaagagtt ttccattgtg gcgctactta tcatcaccac
     7801 gattctgtgg gccttctcct ttagctttta tggcgagtac cttgcggggc acgtcgatag
     7861 ctattttgcg gtgctggtgc gcgttggcct ggcggcactc gtttttctgc cgtttctgcg
     7921 tacccgtggc aatagcctga aaacagtcgg cctgtatatg ctggtgggcg cgatgcagct
     7981 cggcgtgatg tatatgctga gtttccgcgc ttatctctat ctgacggttt ccgaactgct
     8041 gctgttcacc gtactgacgc cgctctacat cacgctgatt tatgacatca tgaataagcg
     8101 ccgtctgcgc tggggatatg cttttagtgc cttgttggcg gtgattggtg ccgggattat
     8161 tcgctatgat caggtcaccg accatttctg gactggcttg ttgctggtgc aactctccaa
     8221 tatcactttt gccatcggca tggtgggtta caaacgcctg atggaaactc gcccgatgcc
     8281 gcagcataac gcctttgcgt ggttctatct tggcgcgttc ctggtggcgg taattgcatg
     8341 gttcttgctg ggaaatgcgc agaaaatgcc gcaaaccacg ttgcaatggg gcattctggt
     8401 gtttcttggc gtggtggctt ccgggattgg ctactttatg tggaactacg gcgcgacgca
     8461 ggtggacgcc ggaacgctgg gaattatgaa taatatgcac gttccggcag ggctgctggt
     8521 aaacctggct atctggcacc aacagccgca ctggccaacg ttgattacag gcgcgctggt
     8581 gatcctggcc tcactgtggg tgcatcgtaa gtgggtcgct ccgcgctctt cacaaacggc
     8641 agatgatcgc aggcgtgatt gcgcgctgag cgaataaacg cttccgtaac tggctgacgc
     8701 tgctcgccat cgcgcacggc ggcgtacagt cggctccaca agccttcgcc cagggttttg
     8761 gtcaccacca gaccctggcg ctcaaaactc tctactaccc aatgcggtag cgcggcaata
     8821 cccatccgcg cggcaaccat ctgaatcaac aataaggtgt tatcgacgct tttcagtgac
     8881 ggactgacgc ctgccggctg aagaaaatgc cgccagacat ccagtcgact acgctgcacc
     8941 ggataaatta atagcgtctc gctggcgaga tcttccggtg taatacgcgt ttttgccgcc
     9001 agtggatggt caggtgctaa caccagacgc acttcatagt cgaacatcgg cgaataatgc
     9061 agaccactgc gcggcagaat atcggacgtc attaccagat ccagctctcc ctgttgcaag
     9121 gcgggctgcg ggtcaaatgt cacgcccgat ttaaagtcca tctcgacctg cggccagttc
     9181 ttatggaaat tttctaacgc gggcgtcagc cactgtatac agctatggca ctcaatggca
     9241 atgcgcagac gcgtctgctg cggttcattg caggcttgca gtgcctggct aatttgtggc
     9301 agcacctggt ttgccagttg caacaggatt tctccctgcg gtgtaaagcg aagcggctgg
     9361 cttttacgca caaatagccg gaagccaagg cgttgttcca gatcgctaaa ctggtgagac
     9421 agggcggatt gcgtttgatg caacgtcgcc gcagcggctg cgagtgagcc gcagttccgc
     9481 aacgcttgta gcgttttcag atgttttact tcgatcatga aagtccttca cttcggcatg
     9541 aataatttgc gcttgaggaa tatacagtaa ccgccaatta tggatgtgta aacatctgga
     9601 cggctaaaat ccttcgtctt ttaaatttat ggtgcgttgg ctgcgtttct ccaccccggt
     9661 cacttacttc agtaagctcc cggggatgaa taaacttgcc gccttcccta aattcaaaat
     9721 ccataggatt tacatataat tagaggaaga aaaatgacaa tattgaatca caccctcggt
     9781 ttccctcgcg ttggcctgcg tcgcgagctg aaaaaagcgc aagagagtta ttgggcaggg
     9841 aactccacgc gtgaagaact gctggcggta gggcgtgaat tgcgtgctcg tcactgggat
     9901 caacaaaagc aagcgggtat cgacctgctg ccggtgggcg attttgcctg gtacgatcat
     9961 gtactgacca ccagtctgct gctgggtaac gttccggcgc gtcatcagaa caaagatggt
    10021 tcggtagata ttgacaccct gttccgtatt ggtcgtggac gtgcgccgac tggcgaacct
    10081 gcggcggcag cggaaatgac caaatggttt aacaccaact atcactacat ggtgccggaa
    10141 ttcgttaaag gccaacagtt caaactgacc tggacgcagc tgctggagga agtggacgag
    10201 gcgctggcgc tgggccacaa cgttaagcct gtgctgctgg ggccggttac ctggctgtgg
    10261 ctggggaaag tgaaaggtga acagtttgac cgcctgagcc tgctgaacga cattctgccg
    10321 gtttatcagc aagtgctggc agaactggag aaacgcggca tcgagtgggt acagattgat
    10381 gaacccgcgc tggtactgga actaccacag gcgtggctgg acgcatacaa acccgcttac
    10441 gacgcgctcc agggacaggt gaaactgctg ctgactacct attttgaagg cgttacgcca
    10501 aatctcgaca cgattactgc gctgcctgtt cagggactgc atgtggacct tgtacatggt
    10561 aaagatggcg ttgctgaact gcacaagcgc ctgccttctg actggctgct gtctgcggga
    10621 ctgatcaatg gtcgtaacgt ctggcgcgcc gatcttactg agaaatatgc gcaaattaag
    10681 gacattgtcg gcaaacgtga tttgtgggtg gcatcttcct gctcgttgct gcacagcccc
    10741 atcgacctga gcgtggaaac gcgtcttgat gcagaagtga aaagctggtt tgccttcgcc
    10801 ttacaaaaat gccatgaact ggcactgctg cgcgatgcgc tgaacagtgg tgacacggca
    10861 gctctggcag agtggagcgc cccaattcag gcgcgtcgtc actctactcg tgtacataat
    10921 ccggcggtag aaaagcgtct ggcggcgatc accgcccagg acagccagcg tgcgaatgtc
    10981 tatgaagtgc gtgctgaagc ccagcgtgcg cgttttaaac tgccagcgtg gccgaccacc
    11041 acgattggtt ccttcccgca aaccacggaa attcgtaccc tgcgtctgga tttcaaaaag
    11101 ggcaatctcg acgccaacaa ctaccgcacg ggcattgcgg aacatatcaa gcaggccatt
    11161 gttgagcagg aacgtttggg actggatgtg ctggtacatg gcgaggccga gcgtaatgac
    11221 atggtggaat actttggcga gcacctcgac ggatttgtct ttacgcaaaa cggttgggta
    11281 cagagctacg gttcccgctg cgtgaagcca ccgattgtta ttggtgacgt tagtcgcccg
    11341 gcaccgatta ccgtggagtg ggcgaagtat gcgcaatctc tgactgataa accggtgaaa
    11401 gggatgctga ctggcccggt gaccattctc tgctggtcgt tcccgcgtga agatgtcagc
    11461 cgtgaaacca tcgccaaaca aattgcgctg gcgctgcgtg atgaagtggc ggacctggaa
    11521 gccgcaggaa ttggcatcat ccagattgat gaaccggcgc tgcgcgaagg tttaccgctg
    11581 cgtcgtagcg actgggatgc atatctccag tggggcgtgg aggccttccg tatcaacgcc
    11641 gccgtggcga aagatgacac acaaatccac actcacatgt gttattgcga gttcaacgac
    11701 atcatggatt ccattgcggc actggatgca gacgtcatca ccatcgaaac ctcgcgttcc
    11761 gacatggagt tgctggagtc gtttgaagag tttgattatc cgaatgaaat cggtccaggc
    11821 gtctatgaca ttcactcgcc aaacgtaccg agcgtagaat ggattgaagc cttgctgaag
    11881 aaagcggcaa aacgcattcc ggcagagcgc ctgtgggtca acccggactg tggcctgaaa
    11941 acgcgcggct ggccagaaac ccgcgcggca ctggcgaaca tggtgcaggc ggcgcagaat
    12001 ttgcgtcggg gatgatgaat attaacgagt cactgtaaat tgcagtacga tgaaagaggc
    12061 aaaactgcct gataccaggc ctacataatt tatgcaattt attgaatttt tgagttttgt
    12121 tggccggaca aggcgttcac gccgcatccg gcatgaacaa cgcgcacttt gccaataatc
    12181 tgatggcttc catcaccgga agccattttg ctatctgcgc ccgttcagat acagaaataa
    12241 ccgaatcatt tttacgcaaa atataatcct gagcgatttg ttcagtaatc aacgctacgt
    12301 tatttattct cacttttcac gaaattgtat cccttttcag taacgtggta gtgaggcata
    12361 gacttatgtc cgctatcctc aataataacc aaaccctcgt tagctaattt gttaacaatg
    12421 ttaacaacat taccgaatcc tggaatttgc cttatggata gtgtgcgatc gagattcatc
    12481 cagttccagt ttatatcttt ctcagccata actttcagta cgttaatttc agtttcagtt
    12541 atcatagtca agtgcatcct ggtggtataa gtcattaagt tctcccttaa gtttataatc
    12601 ttctagagta gcagtatgcg tatgattcca gagtgcatag cctgcgtcac catcaggttg
    12661 tcctgtttcc caaccaagat tacagtaacg ctgatattcc cgacactcat gagtatagaa
    12721 gttaagatct acttgttctg gggggatttt tcctttctca atgtctttca gtctattgat
    12781 catcacttca tttatagggt catgaccaaa tctggctatg tgtttttcaa caatagcgat
    12841 accttccctg ttgattgtta cgccatctgt cgtcagattt tctattggac caccggcaag
    12901 gtcgggatta aatg
//
LOCUS       DAJVUY010000120        12907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.120, whole genome shotgun sequence.
ACCESSION   DAJVUY010000120 DAJVUY010000000
VERSION     DAJVUY010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.120"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ72_003020"
     CDS             complement(75..1697)
                     /gene="eutB"
                     /locus_tag="OQQ72_003020"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HCS2012671.1"
                     /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA
                     QTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL
                     RESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAYEDDCVT
                     RLIQDDVNETAYNQIKNWSISELREYVLSDETSVDDIAFTRKGLTSEVVAAVAKICSN
                     ADLIYGAKKMPVIKKANTTIGIPGTFSARLQPNDTRDDVQSIAAQIYEGLSFGVGDAV
                     IGVNPVTDDVENLSRVLDTIYGVIDKFNIPTQGCVLAHVTTQIEAIRRGAPGGLIFQS
                     ICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANFGADQV
                     TMEARNYGLARHYDPFIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMGCDC
                     CYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTTAFHDTATVRQLLNL
                     RPSPEFERWLESMGIMANGRLTKRAGDPSLFF"
     gene            complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ72_003021"
                     /pseudo
     CDS             complement(1687..2522)
                     /gene="eutJ"
                     /locus_tag="OQQ72_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311343.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
     gene            complement(2533..3936)
                     /locus_tag="OQQ72_003022"
     CDS             complement(2533..3936)
                     /locus_tag="OQQ72_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HCS2012672.1"
                     /translation="MNQQDIEQVVKAVLLKMQSSDTPPAAVHEMGVFASLDDAVAAAK
                     VAQQGLKSVAMRQLAIAAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAP
                     HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE
                     AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAAKIA
                     AAIGLNVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH
                     TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ72_003023"
     CDS             complement(3948..4235)
                     /gene="eutN"
                     /locus_tag="OQQ72_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HCS2012673.1"
                     /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI
                     DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK"
     gene            complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ72_003024"
     CDS             complement(4342..4635)
                     /gene="eutM"
                     /locus_tag="OQQ72_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HCS2012674.1"
                     /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM
                     VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL"
     gene            complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ72_003025"
     CDS             complement(4674..5690)
                     /gene="pta"
                     /locus_tag="OQQ72_003025"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS2012675.1"
                     /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL
                     VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD
                     PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSFIFLMLPQYSGP
                     ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV
                     QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG
                     YNIAQRLGGYRAVGPLIQGLAVPMHDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQ
                     TLVE"
     gene            complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ72_003026"
     CDS             complement(5680..6489)
                     /gene="eutT"
                     /locus_tag="OQQ72_003026"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HCS2012676.1"
                     /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR
                     IKFIDEQGRLFVDDEQQKPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM
                     VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC
                     QAIVGLSDEDLHRLSHQPLRYLDHDHLVLEASHGRDAALLNLLRTKVRETETVAAQVF
                     ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGERNDY"
     gene            complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ72_003027"
     CDS             complement(6486..7187)
                     /gene="eutQ"
                     /locus_tag="OQQ72_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HCS2012677.1"
                     /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT
                     ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ
                     SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG
                     FMQWENAFFPWTLNYDEIDMVLEGVLHVRHEGQTMIAKAGDVMFIPKGSSIEFGMTSS
                     VKFLYVAWPANWQSL"
     gene            complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ72_003028"
     CDS             complement(7162..7641)
                     /gene="eutP"
                     /locus_tag="OQQ72_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HCS2012678.1"
                     /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT
                     PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD
                     MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE"
     gene            complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ72_003029"
     CDS             complement(7654..7989)
                     /gene="eutS"
                     /locus_tag="OQQ72_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HCS2012679.1"
                     /translation="MDKERIIQEFVPGKQVTLAHLISHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLN
                     YTLCEMTKS"
     gene            complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ72_003030"
     CDS             complement(8281..10560)
                     /gene="maeB"
                     /locus_tag="OQQ72_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HCS2012680.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            10849..11799
                     /gene="tal"
                     /locus_tag="OQQ72_003031"
     CDS             10849..11799
                     /gene="tal"
                     /locus_tag="OQQ72_003031"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS2012681.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            11819..>12907
                     /locus_tag="OQQ72_003032"
     CDS             11819..>12907
                     /locus_tag="OQQ72_003032"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS2012682.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTGYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGDLPK
                     DWEKTTQKYINELQANPAKIATRKASQNT"
BASE COUNT         2879 a         3696 c         3354 g         2978 t
ORIGIN      
        1 tcccattgac gccatcacgc tgcgtacaat ttcttcaatc tgtttttgat ccatgatgtg
       61 ttatctccgc gtcatcagaa gaacagtgac ggatcgcccg cccgtttggt caggcgaccg
      121 tttgccataa tgcccatgct ttccagccag cgttcaaact ctggtgacgg gcgcaggttg
      181 agtaactgac gcacagtggc ggtatcgtgg aatgcggtgg tctggtagtt gagcatgatg
      241 tcatcaccca gcggcatccc catgatgtag ttgcagcctg cggtggcgag caggatcatc
      301 aggttttcgt tgaggttctg gtcagcgtca gcgtggttgg tgtagcagca gtcacagccc
      361 atagagatgc cgctcagctt gcccataaag tgatcttcta agccagcacg gataatctgg
      421 cggtcgttgt agagatactc cggcccaata aagccgacca cggtgttgac gataaacgga
      481 tcgtaatgac gcgccagccc atagttacgt gcttccatcg tcacctggtc agcgccgaag
      541 ttagcgccag cggatagcgc agagccttgt ccggtttcga agtagaggca gttttccccg
      601 gcgatacggt tgaactctgc acccactgcg cgcgcttcgt cgagcatcgc cagttccacg
      661 ccaaactctt tcagcccttt ttcgctgcca cagatactct ggaaaatcag tccgccaggc
      721 gcgccgcgac gaatcgcttc gatctgggtg gtgacgtgcg ccagtacgca gccctgagtt
      781 gggatgttga atttgtcgat cacgccataa atggtatcca gcacgcggct taagttttcc
      841 acgtcgtcag ttaccgggtt gacgccgatc accgcatcgc ccaccccgaa ggaaagccct
      901 tcgtagattt gcgcggcgat actttgcacg tcgtcacgag tgtcatttgg ctgcaaacgg
      961 gcgctgaagg tgcccggaat accgatggtg gtattggcct ttttgattac cggcattttc
     1021 ttcgcgccgt agatcaggtc cgcgttggag caaatcttcg ctaccgccgc gaccacttcc
     1081 gaggtcagcc ctttgcgggt aaaggcaatg tcgtccacgc tagtttcatc gctcagcaca
     1141 tactcacgca gttcgctgat gctccagttt ttaatctggt tgtaggccgt ttcgttaaca
     1201 tcgtcctgaa tcagccgcgt cacgcagtca tcttcatagg caatcagcgg caagcgcggt
     1261 tgcagaacgc tggtttctga catctctgcc agcgtgctat ccgggttcgt caccagcaac
     1321 gccacggctt tcgccgcatc cagcaccgag ccgccgccaa atgcgatcac cccatcacag
     1381 cctgactcac gcaactgcgc cacggctgca cacacgtcgg tgatgcacgg ttcgcccacc
     1441 ggacatggcc agagcgtcat ggcgatgcct ttaacagcca ggctgcgcgt cagcccggcg
     1501 gtcatccctg cctgatgcaa aaagctgtct gccatcacga acagatgttt cagcccacgc
     1561 gtttgcgctt gctgtccgca actgctcacc gagcccggac cgcaaagcgt caccggtgga
     1621 acgctaaatg tttttacccg ttgcagattc agggtatcga acgcctgaaa gagcgcggtc
     1681 tgcaattcat tttgcatata gcccctccgc tttctctcgc ccactactgg cgatcgccag
     1741 cggggtcata aacaaactgt gctgcggtaa atgcacctgt aacgccggga attgtttgcg
     1801 aaacagttcc gccacgcccg gttgcataca agagccgccc gccagccata aatcagtaat
     1861 gccctgccct tcaatatgcc gggcgacaat gtccgccatt ttttcgtaca ccggtttcac
     1921 cgtaggccaa atctcttcac cgtgaccgcg cttgtactgc tccgcctctt ccagcgaaat
     1981 acggcgattt ccggcgagag tcagagagat gtgatgtccg ccggttgctt catccgccga
     2041 gtacgtcacc ttgccctttt tcacgatggc aatgccggta gtgccgccgc cgatatccac
     2101 tacaccggcg ttgtccagtt gcagcagctc cgcaactgcg gttggctcat ccagcacatg
     2161 gccacttcca gtccagcaga ctccagcacg ttgatggaaa tacgcgggtc cgtacctgga
     2221 ggaaatgaag tcgccgcatg gctaaaacgg cgaccgaatt gctgctcgag cgtgtcgaga
     2281 tggcgacgaa caatggtgac agcgccgaag aaatcccaga cgatgccgtc gcggaccaca
     2341 tcggcccagt cgaggcatac cgccaccggc tgaccgtcgc ggtcgacaac catcgacacc
     2401 acatcgcagg tgcccagatc cacccccagc cacagcggag attccgtcgc ggcgggcgtc
     2461 tggttacaca gcgttgccgc cgtttgcaga cgtggggtga gccattgttc gtcgtgcgcc
     2521 atctgttact ccttaaacaa tgcgaaacgc atcgactaat acacagcgac gcagacggac
     2581 aaacgtacgc gcgctggtta ccccttcacc ggttggcgtg gtgatggtca tggtggtcca
     2641 gccttccccg cccagcccca gcccggcaat gcacggtccg ttcttaacga aaatgctggt
     2701 atcaatagca ttcgccatct ggttcatgtt ttcgatgttg cgcgagtgca ttgccgccgt
     2761 gtggtggcaa ccgccttcca gtttcaccgc cagcgcaatg gcatccgcca cgttggcgac
     2821 gcgcacgacg ggcagcaccg gcatcatcag ttcggtcacg gcaaacggat gttctgcagt
     2881 ggtttccaca aacagcaaac gcgtttcttg cggcacgttc aggccgattg ccgccgcgat
     2941 tttcgccgca tcgcgaccaa cccagtcacg gctgacggtg ccttttccgc gctcgtcgat
     3001 atttttcagc aacaccggtt gcagctgctg cgcctgttct gcggtcagtt tcaccgcgtg
     3061 ctggccttcc atcagacgca tcagttcatc ggctacgcta tcaacaacaa tcagtacctt
     3121 ttcgtcggca caaatgatgt tgttatcgaa agaagcgcct ttgacgatgg actgagcggc
     3181 acgggcgagg tcggcggttt catccaccac taccggcggg ttgccagcgc ctgcggcaat
     3241 cagacgttta ttggtgtgtt tacgcgccgc ttctactacc gcttcgccgc cggtcaccac
     3301 cagaaggccg atgcccggaa acttgaacaa acgctgcgcg gtttcgatat ccggatttgc
     3361 cacagtaacc agtaagtttt ccggcccgcc tgcggcaaca atcgcctggt tgagcagcgt
     3421 gatcgcccgc tgggagactt ttttcgccgc cggatgcggg gcaaaaatga cgctgttgcc
     3481 cgcggcaatc aggctgatgg cgttattaat tacggttgcc gccgggttag tggacggagt
     3541 taccgaagcc accacgcccc agggcgcgtt ttcaattaaa gtcaggccgt tgtcgccggt
     3601 cagcacctgc ggagagagac actcaacgcc tggcgtgccg cgcgcctgag cgacgttttt
     3661 ggcaaattta tcttcaacgc ggcccatgcc ggtttcactg acggcaagtt ccgctaaatc
     3721 tctggcgtgt ttttcgcctg cctcacgaat ggcagcaatg gctaactggc gcattgccac
     3781 gctttttaac ccttgctggg cgactttggc tgccgcaacg gcgtcatcca gggacgcgaa
     3841 aacgcccatc tcatgaacgg cggcgggcgg cgtgtcactg ctttgcattt tcagcagtac
     3901 cgctttcacc acctgttcaa tatcctgttg attcatgatg ttctgcctta tttgtggaaa
     3961 attacctgac cgccagacac cacctcatcg acaatgccaa tcacgcacag atcgaccggt
     4021 gacgtttcgc ttttatgcgc ctggcgggcg gaactgccac tcaccagtaa cacccactcc
     4081 ccggttcccg cgccaatatt gtcgatggcg acggcgcatt gcccgtcagg attaccttgt
     4141 ggatcaatca tttccaccat cagcaatttg tcatgcgcca gtccgtgatg gcgtacggta
     4201 caaacaattt gtccagtgac gactgccagt ttcatacccg cctccgtggc gtatttcagg
     4261 taaaagctcc ccctaccctc cgcagaaggt aaaatgaaaa aggagagagc gtaacgcccg
     4321 aatcgacgtc acacagggtg attacaggtt gctgctatcg cctttcaggc cgatcgggaa
     4381 gacttcttcc aggtcgccgt gcggacgcgg gataacgtgt acagatacca gctcgccgat
     4441 acgctgtgcc gctgcggcac ctgcatcggt cgcggcttta caggctgcaa catcaccacg
     4501 aaccatggca gtacacaggc cgccgccaat ctgcttaaca ccaaccagct tgacgcgcgc
     4561 agctttcacc atcgcgtcag aagcctcaat cagtgcaacc aggccccggg tttcgatcat
     4621 tcctaatgct tccattgtgc tttcctcttt atcagggtcc agaacgggac cgttcattca
     4681 accagtgttt gtaaactgct ttcgcggttc acttctgtct gacgcggcac agctgccacc
     4741 agcgccagct cgataatttc ctgcacgcta caaccacgag agagatcgtg catcggcacg
     4801 gcaagtcctt gtatcagtgg cccgacggca cgatatccgc cgagtcgttg tgcgatgttg
     4861 taaccaatat ttccggcttc cagcgacgga aaaaccatca cattggcctt gccctgtagc
     4921 gggctggcag gcgctttttg cgccgccact tccggcacga aggcggcgtc aaactgtaac
     4981 tcgccatcca ccaccagctt tggtgcgcgc tcacggacga tttctgtcgc ctgctggacg
     5041 ttagcaacac aggggtgacg ggcgctacca ttgctggaaa acgacagcat cgccacgcgc
     5101 ggctcttctc cggtgatggc gcgccaggtt tcggcactgg caagcgcgat atccgccagc
     5161 tgcgccgccg tcggctgtgg caccacgctg caatcggcaa agcccaacgc cgggccgctg
     5221 tactgtggca acatcaggaa aatgaaagag agcgttttac agcctggctg caagccgata
     5281 atgcgtaatc cggcacgcag cacatttgcc gtggaagaga ggttgcctgc gatacagaca
     5341 tccgctttac cggcgctgac cattgctgcg gcgaacatca gagggtcggt aagtttttcc
     5401 agcgcatccg gcggcgtttt ttcgcccgcg cgggccagcc agcgatgagc aaattcttcc
     5461 cgcattgcga ggttgccatg cggatcaatc acctgtagcc cgtccatcgc cacgccgtga
     5521 ctgagcgcaa actgacgaag ttcaaacgga ttggcgacca gaatgggcgt tgccagacct
     5581 tgttgatgta aatattgcgc ggctttcagc acacgttgat ctaacgcatc cggaaaaacc
     5641 actctggcgg gcgctcgcaa cgccagttca cgacaacgtt caataatcat tgcgttcccc
     5701 cagtcgttgt tggatctgct tcaccgttag cggctgcttc gttacgctca ggatcatcat
     5761 cacgtagacc gtgctggaaa ggcggttcag cgcctgcaaa atgtccgggc gtaatacttc
     5821 aaagctgcgg gtgataaaga cctgcgccgc tacggtttcg gtttcccgca ctttggtgcg
     5881 tagcagattg agcaacgcag catcgcgccc gtggctggct tccagcacca gatgatcgtg
     5941 gtcgagatag cgcagcggct gatgagaaag ccgatgcaga tcttcgtcag aaagcccgac
     6001 aatcgcctgg cagcccagcg gttcccccag cgcatcggcg cgcataatgt tgccaagacg
     6061 cgaacggata tccgccagcc acggctgcca cggttccgcc agttcaattt gcagccacac
     6121 tgccagcgca atggtgctgt cgagaaccgc gcgaaaaccc agacgcggat cgcttttggc
     6181 gaccattttt tccgccgaca ggtgagtcag cgtatccggc ttttttgcca ccggctggcg
     6241 gcacagttcg cagcacgcct gcggatgttc atcgctactg gtcagcccat gaacgggctg
     6301 cggcttctgc tgttcatcgt caacaaacag gcggccctgc tcgtcaataa acttgatgcg
     6361 cagatggcgg ctttccagca actcccgggc agagggcgtc aggcgactgt ccgcagggag
     6421 atggatctct gcgccttcgc tgagcgtatg gttcgctctt agccatgctt cggtgatgaa
     6481 atctttcata gggattgcca gttagccggc caggcgacat acaggaattt cacgctggat
     6541 gtcataccaa attcgatgct ggagcctttc gggataaaca tcacgtcgcc tgctttggcg
     6601 atcatggttt ggccttcgtg gcgaacatgc agcacccctt ccagcaccat gtcgatttcg
     6661 tcgtagttca gggtccacgg gaagaatgcg ttctcccact gcataaaacc ggcggccatg
     6721 ctgctgccgt cgtctccggt cacaagatca gtcaagccca cgcaatgcgg ctctgcgccg
     6781 tcgaaacgac caaacttgac gctgctgcca tcaatcactt tgatgccgcc tttgccggtc
     6841 accgatttga agctcggctg cattgcgccc tgctccagcg actgtttttc cttcatcact
     6901 ttttccatca gctgtgcgac caggctttcg gtaaactggc cttccggcag ctgggcaatg
     6961 atggtttcgc ggatgcgctg gctttcggtt ttgtcggctg gcacgctggc gggcacggac
     7021 gccgttaccg ggatcgattc atcacattcg gtgatggtaa aacccagtag atccgccact
     7081 tcacgggctt ccggggtaat aatgctggcg cgcagaacca cggacattgc ctgttcgccg
     7141 cgcgcgtgtg cttcacgaat atcattcgct gtgatgagtt ttttcacctg cttcctcctg
     7201 tttggtgaga gatgccagat aatccaccag ttgctgcacg ctttgcgggt cgtggctgtt
     7261 tagctcgaaa atcggctctt cgaaacccgt ctcaagcaat aactttcgcg ttgcggcgac
     7321 gtcagcatct ggcatgtccg ttttactgat gacggcaatt tgccgtttgc tgacgccaat
     7381 atccagcaac ccggcaggca accgactttc cgggtcattt gcgccatgga catagatcag
     7441 catgtctaca tcctgtagcg tggtaattaa ggcgtgatac cagcggggat ggctaaaata
     7501 ttcacccggc gtatcaatat cgcccttatc attaaattcc acggcctgtg tttttctggc
     7561 gagggtataa ttcccctgca acgcattaaa taacgttgtt tttcctgccc cgacactacc
     7621 cacaaacgca attcgtttca tgaatgcctc gtattaactt ttggtcattt cacaaagcgt
     7681 ataatttaat aagcgaccta aaccgctgac ggtttgtgat aacgcttctt ctactgcgcc
     7741 caccgagcca taaatcacca atgcaccgct gaagcggtcg agaaaaccga tatgcacatc
     7801 agcggctttc agcgctaaat caccggcgat catcgccgtt tcgccgggag ttagcgtcat
     7861 aatgccaatt gcgcccgcat ccggaacgcc gattttcttc gccagttcct caccgggatg
     7921 cgagatgaga tgcgccagtg tgacctgttt gccgggcaca aattcctgaa tgatgcgttc
     7981 tttatccatg agtcgccgcc tgtgaaaaac tttcgtgtat cgtgacaatt tttcgtcaga
     8041 gtaaataaca aaattcggca agcgcgttta aaaggtgagg tagatcacta agaatggaga
     8101 gatattcgct gtggtgcata aactttcata tgcaacgcat gaatataaat aaaataatat
     8161 cgagatatta tatagactgc ttttttatta ttcgcaaact cagtaataag ctttactaat
     8221 atattgcagc caaaccgctt accctgaata ttcagggtaa gcgtgagagt taaaaaagaa
     8281 ttacagcggt tgggtttgcg cttcaaccac ggccagcgcc accatgttga cgatacgacg
     8341 caccgatgcg atcggcgtta acacgtgaac cggtttcgcc acgcccatca gcaccggacc
     8401 gacagtcaca ccttccgagc tggaaacgcg cagtaagttg taactaatgc gggcagcttc
     8461 catgttcggc atcaccagaa tattggcaga acctttcaaa gggctgtccg gcatacggtc
     8521 gttgcgaatc gcttccacca gcgctgcatc gccgtgcatt tcaccatcaa tcatcagatc
     8581 tggcgcacga tccctgacca gttccagcgc ctgacgcatt ttgctcgacg acgggcagtc
     8641 agaagaacca aagttggagt gcgacaacag agcaacgcgc ggctcaatac caaaacgacg
     8701 gacagtttct gccgccatca aggtgatctc cgccagctct tctgcgtctg gttcgtcatt
     8761 gacgtaggta tcggcaataa aggtgttacc actcggcagc agcagcgcgt tcattgcacc
     8821 tgcggtgtga acgccatcgc gataaccaaa gacatttttc accacgctaa aatgttcatg
     8881 ataatcgccc accgtaccgc agatcattgc atcggcttcc ccacgctgaa ccatgatcgc
     8941 gccgatcact gtcgggttac tgatcagcgc ccgctgcgcc tgttcctgag tgacaccgcg
     9001 acgcttcatg atctggaagt attcggtcca gtactcttta aagcgcggat cggattcgtt
     9061 attgacgatc tcaaaatcaa cgcccgcttt gatctgcaag cccagtttct gaatgcgcat
     9121 ttcgatcacg ttcggacgac cgataaggat cggtttcgcc agtcccagcg ttaccagttc
     9181 ctgagtggca tgcagaacgc gcgcctcttc cccttctggc agaacaacgc gcttcggcgc
     9241 tttgcgagcc tgggagaaaa tcggcttcat aaacaggttg gttttgtaaa cgaactcagt
     9301 cagcttgtcg atgtagacgt cgaaatcagc aatcggacgc gtcgccacgc ccgactccat
     9361 cgcggcttta gcgaccgcag gagcgatctt aacgatcaag cgcggatcaa acggttttgg
     9421 aatgatgtat tccggaccaa agctcagatc ctgatcgcca tacgctgaag ccaccacttc
     9481 gctctgttcc gcatgggcga gttctgcaat cgcacgtacc gccgccagtt tcatctcttc
     9541 gttgatggcg gttgcgccaa cgtccagcgc gccacggaag atgaacggga agcacaggac
     9601 gttgttcacc tggttcggat agtcagaacg accggtgcaa atgatggcat ccggacgcac
     9661 ttctttcgcc agcggcggca gaatttccgg ttccgggttc gccagcgcca ggatcattgg
     9721 cgcacgagcc attttcttca ccatttcctg ggtcagcact ttcgggccgg aacatccgag
     9781 gaaaatatcc gcgccttcaa tcacatcatc gagggtacgt ttgccgtcgt ccaccaccgc
     9841 atatgcggct ttggtttccg ccatgtttgg ctcacggccc tgatagataa cgccttttga
     9901 atcgcaaacc acgatgttat gtttttgcag acccagcgct accagcaggt tcatacaggc
     9961 gattgctgcg gcacccgcgc cggaaaccac catccgcacg tcggagatgt ttttctccac
    10021 cacgcgcaag ccgttgagga tggcggcagt gctgatgatt gccgtgccgt gctgatcgtc
    10081 gtggaatacc ggaatattca tccgctcgcg cagtttctgt tcaatataga aacattctgg
    10141 cgctttaatg tcttcgaggt tgattccgcc gaaggtcggt tcgagcgcag cgacaacttc
    10201 aataaatttg tccgggtcga gttcatcaac ttcaatgtca aatacatcaa tcccggcgaa
    10261 tttcttaaac agaacgccct tgccttccat caccggtttg ccagccagcg cgccaatgtt
    10321 gcctaacccc agcaccgccg taccgttaga gatcaccgcc accaggttac cgcgcgcggt
    10381 atatttgtag gcttttaacg ggtctttttc gatttcaaga caaggtgcgg caacgcctgg
    10441 tgagtaggcc agcgccagat cgcgctgcgt tgccagaggc ttggttggag aaacctggat
    10501 tttccctgga actggaaatt catggaaatc aagtgcactt tgttttaact ggtcatccat
    10561 ttggttgttc ctttcacgta acgttcacaa ataaagtgtg tgggcaacag cccctgccca
    10621 caacgtggcg cacattatta ccccgccgga gtctacagac tttgagcaag tccaaactct
    10681 caccattaat ataatgtttt ggtaataatc ctataacact gatgttacct gcttaatcca
    10741 gcaataccat gcctgtctgc tatgcttttt tgatgcgttt agcgaaattt ctcagaagtg
    10801 tgaattaacg cactcatcta acactttact tttcaaggag tatttcctat gaacgagtta
    10861 gacggcatca aacagttcac cactgtcgtg gcagacagcg gcgatattga gtccattcgc
    10921 cattatcatc cccaggatgc caccaccaat ccttcgctgt tgctcaaggc tgccggatta
    10981 tcacaatatg agcatttaat agacgatgct atcgcctggg gtaaaaaaaa tggcaagacc
    11041 caggaacaac aggtggtcgc agcgtgtgac aaactggcgg tcaatttcgg tgctgaaatt
    11101 ctcaaaatcg tacccggtcg cgtgtcaaca gaagttgatg cacgcctctc ttttgataaa
    11161 gaaaagagta ttgagaaggc gcgccatctg gtggacttgt atcagcaaca aggcgttgag
    11221 aaatcacgca ttctgatcaa actggcttcg acctgggaag gaattagcgc ggcagaagag
    11281 ctggaaaaag aaggtattaa ctgcaacctg acgctgctgt tttcttttgc ccaggcgcgg
    11341 gcctgtgcgg aagcaggcgt ttttctgatt tcgccgtttg tcgggcgtat ttatgactgg
    11401 tatcaggcac gcaagccgat ggacccgtat gtggtggaag aagatccggg cgttaaatcg
    11461 gtgcgcaata tctacgacta ctataagcaa caccactatg aaaccattgt gatgggcgcg
    11521 agcttccgtc gcaccgaaca aatcctcgcc ttaaccggct gcgatcgact gactatcgca
    11581 ccgaatttgc tgaaggagct gcaggaaaaa gtttcgccag tggtacgtaa attaatccca
    11641 ccttctcaga cgttcccacg cccagctccc atgagcgaag cggagttccg ttgggagcac
    11701 aatcaggatg cgatggcggt agaaaaactg tctgaaggca ttcgtctgtt cgccgttgat
    11761 caacgcaaac tggaagatct tcttgccgcc aaactataaa ccagccacgg agtgttatat
    11821 gtcccgaaaa gaccttgcca atgcgattcg cgcactcagt atggatgcgg tacaaaaagc
    11881 caactctggt catcccggcg cgccgatggg catggctgat attgccgaag tgctgtggaa
    11941 cgattttctt aaacataacc ctaccgaccc aaccgggtat gatcgcgacc gctttattct
    12001 ttccaacggt cacgcgtcga tgctgctcta cagtttgctg catctgaccg gttacgacct
    12061 gccgctggaa gagctgaaga acttccgtca gttgcattcg aaaaccccag gccacccgga
    12121 gattggttat acgcccggtg ttgaaaccac caccggtcca cttggacaag gtttggcgaa
    12181 cgccgtcgga ctggcgatag cagagcgtac actggcggcg cagtttaatc agccggatca
    12241 tgaaattgtc gatcacttca cctatgtgtt tatgggcgac ggctgcctga tggaaggtat
    12301 ttcccacgaa gtctgttcgc tggcgggcac gctaggactg ggcaagctga ttggttttta
    12361 cgatcacaac ggtatttcga ttgatggaga aaccgaaggc tggtttaccg acgatacggc
    12421 aaaacgtttt gaagcctatc actggcatgt gatccatgaa atcgacggtc acgatccgca
    12481 ggcggtgaag gaagcgatcc ttgaagcgca aagcgtgaaa gataagccgt cgctgattat
    12541 ctgccgtacg gtgattggct ttggttcgcc gaataaagca ggtaaggaag aggcgcacgg
    12601 cgcaccactg ggggaagaag aagtggcgct ggcacggcaa aaactgggct ggcaccatcc
    12661 gccatttgag atccctaaag agatttatca cgcctgggat gcccgtgaaa aaggcgaaaa
    12721 agcgcagcag agctggaatg agaagtttgc cgcctataaa aaggctcatc cgcaactggc
    12781 agaagagttt acccgacgga tgagcggtga tttaccgaag gactgggaga aaacgactca
    12841 gaaatatatc aatgagttac aggcaaatcc ggcgaaaatc gctacccgta aggcttcgca
    12901 aaatacg
//
LOCUS       DAJVUY010000121        12879 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.121, whole genome shotgun sequence.
ACCESSION   DAJVUY010000121 DAJVUY010000000
VERSION     DAJVUY010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12879
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.121"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1607
                     /locus_tag="OQQ72_003033"
     CDS             <1..1607
                     /locus_tag="OQQ72_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001299181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS2012683.1"
                     /translation="SAAEDFMKSHVEPTIRDVPALLELAPWFGRKHRDNTLTLKRFSS
                     GVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSI
                     RGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDASPFGLKWEKNKPE
                     SVFYLCEHHGCVIHQSELDQSNGRWICENTGMWTRDGLTFFSAADNEIPPPRSITFHI
                     WTAYSPFTTWVQIVYDWLDALKDPNGLKTFVNTTLGETWEEAVGEKLDHQVLMDKVVR
                     YTAAVPSRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVD
                     VAINKKYRHADGTEMTISRVCWDTGGIDGEIVYQRSKKHGVFRVLPVKGASVYGKPVI
                     TMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPADEATSYAIRFPDDPEIFSQTEA
                     QQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVLAKS
                     REEETTRPTLKELAAKLSGGVNGYSR"
     gene            1591..1797
                     /locus_tag="OQQ72_003034"
     CDS             1591..1797
                     /locus_tag="OQQ72_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012684.1"
                     /translation="MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLDELN
                     RAINDAESVLGTTRRRRRPLGVRL"
     gene            1794..3386
                     /locus_tag="OQQ72_003035"
     CDS             1794..3386
                     /locus_tag="OQQ72_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS2012685.1"
                     /translation="MKRTPVLIDVNGVPLRESLSYTGGGAGFGGQMAEWLPPSQSADA
                     ALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRPNWRWLGMRETAAK
                     SFVDEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTESTQ
                     LFRTRFKAVSPKRVDTPGHGIGNRFLRAGVEVDRYGRAVAYHICEDDFPRSGSGRWER
                     IPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDSLQATQLQSAIVKAMYA
                     ATIESDLDTEKAFEYIAGAPQGQKDNPLINILDKFSTWYDTNSVTLGGVKIPHLFPGD
                     DLKLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRY
                     FMGRRKFIASRLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWIGAGRMA
                     IDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAEREKAGLSRPVWIA
                     QAYQQQIAESRRPEEETTPRET"
     gene            3376..4881
                     /locus_tag="OQQ72_003036"
     CDS             3376..4881
                     /locus_tag="OQQ72_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HCS2012686.1"
                     /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQ
                     QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG
                     YDGIVACLQQAMADSQVRGILLDIDSPGGQAAGAFDCADMIYRLRQQKPVWALCNDTA
                     CSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGN
                     QFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLA
                     DELINASDAISVMATALNSNVRGGTMPQLTATEAAVQENQRVMGILTCQEAKGREQLA
                     TMLAGQQGMSVEQARAILAAAAPQQPVASAQSEADRIMACEEANGREQLAATLAAMPE
                     MTVEKARPILAAAPLADAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA
                     AGSGKAEPVSASTTALFEHFMANHSPAAVRGGVSQTSADGDADVKMLMAMP"
     gene            4918..5265
                     /locus_tag="OQQ72_003037"
     CDS             4918..5265
                     /locus_tag="OQQ72_003037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS2012687.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLD
                     EATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTFATEAIRWPDSVDEHKKAN
                     AFAGTALSHTALP"
     gene            5323..6351
                     /locus_tag="OQQ72_003038"
     CDS             5323..6351
                     /locus_tag="OQQ72_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS2012688.1"
                     /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDRI
                     TGKTPVAAYVSPIVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN
                     DPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFDTVEVDFGRSEGN
                     NIEQADGKKWSEQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKL
                     DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPEGMLVLG
                     NTAAEGIRCYGAIKDAQALSEGVVASSRYPKHWLTVGDPSCEFTMTQSAPLMVLPDPD
                     EFVVVQVK"
     gene            6403..6786
                     /locus_tag="OQQ72_003039"
     CDS             6403..6786
                     /locus_tag="OQQ72_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-packaging protein FI"
                     /protein_id="HCS2012689.1"
                     /translation="MATKEENLNRLRQLAGLLGREADMSGSAADIAQRVSEWEEELAV
                     SPEGIMHSDESGADQNHTDDGEQLNNTDAPDDVKAVRVRKCLQVMGYCPETGRPVELA
                     LRGMRVLVPSSLATAMIQHGTAEYA"
     gene            6779..7132
                     /locus_tag="OQQ72_003040"
     CDS             6779..7132
                     /locus_tag="OQQ72_003040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012690.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQCGSEVQGVFD
                     DPESLGFAGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEIFWVDRVSPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            7148..7681
                     /locus_tag="OQQ72_003041"
     CDS             7148..7681
                     /locus_tag="OQQ72_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012691.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMAINRVATTAINQSSSQV
                     ARETKVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLKNGRWHVMQRVAGKNRYPIDVVKIPMAAPLKQAFDENVDRIRRERLP
                     KELAYALKQQLRIAIKR"
     gene            7678..8073
                     /locus_tag="OQQ72_003042"
     CDS             7678..8073
                     /locus_tag="OQQ72_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012692.1"
                     /translation="MKHTDIRAAVLDALEQHEHGATLFDGRPVVFDEEDFPAIAVYLT
                     DAEYTGEELDADTWRATLHIEVFLPAQVPDSELDQWMESRIYPAMTAIPALAGLITTM
                     VTQGYEYRRDDDMALWSSADLTYSITYEM"
     gene            8081..8833
                     /locus_tag="OQQ72_003043"
     CDS             8081..8833
                     /locus_tag="OQQ72_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012693.1"
                     /translation="MATPNPLEPVKGAGTTLWVYNGKGDAYANPLSDDDWQRLAKVKD
                     LTPGEMTAESYDDNYLDDEDADWTATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFES
                     GDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITP
                     VSAIKVTPTSGTVAKGKTTTLTVSFEPESATDKTFRAVSADPSKATISVKDMTITVNG
                     VATGKVQIPVVSGNGQFAAVAEVTVTEAGAAG"
     gene            8847..9278
                     /locus_tag="OQQ72_003044"
     CDS             8847..9278
                     /locus_tag="OQQ72_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS2012694.1"
                     /translation="MFLKTEQFEYNGVSVTLSELSALQRIEHLALLKRRAEQAESCGN
                     LQVSVEDLVRTGAFLVAMSLWHNHPQKTQSPSMNEAVMKIEQEVLTTWPADAIARAED
                     VVLCLSGMIEAVRPDTDITEVAKNNTLTDDDFSAGKSSTAS"
     gene            9305..9718
                     /locus_tag="OQQ72_003045"
     CDS             9305..9718
                     /locus_tag="OQQ72_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS2012695.1"
                     /translation="MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTY
                     AVLSLFFCDPDMHPSDFSLLVSRHEEEQVERPDEDKMLMQKAAGLAGGVRFGGDGGRD
                     ILSSADVADVMVDDAALMMASAGIPGGVRYVPAGW"
     gene            9699..12272
                     /locus_tag="OQQ72_003046"
     CDS             9699..12272
                     /locus_tag="OQQ72_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS2012696.1"
                     /translation="MSQPVGDLVIDLSLDAVRFDEQMSRVRRHFSGLDTDARKTASAV
                     EQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIATQLAGGQNPWLILLQQGGQVKD
                     SFGGMIPMFRGLAGAITLPMVGVTSLAVATGALVYAWYQGDSTLSAFNKTLVLSGNQS
                     GLTADRMLTLSRAGQAAGLTFNQARESLAALVNAGVRGGEQFDAINQSVARFASASGV
                     EVDKVAEAFGKLTTDPTSGLMAMARQFRNVTAEQIAYVAQLQRSGDEAGALQAANDIA
                     TKGFDEQTRRLKENMGTLETWADKTGKAFKSMWDAILDIGRPESSADMLASAQKAFDE
                     ADKKWQWYQSRSQRRGKTSSFRANLQGAWDDRENARLGLAAATLQSDMEKAGELAARD
                     RAEREASQLKYTGEAQKAYERLQTPLDKYTARQKELNKALKDGKILQADYNTLMASAK
                     KDYESTLKKPSGVKVSAGERQEDRAHAAMLALETELRTLEKHSGVNEKISQQRRDLWE
                     AENQYVVLKEAATKRQLSEQEKSLLAHEKETLEYKRQLAELGDKIEHQKRLNELAQQA
                     ARFEQQQSAKQAAISAKARGLTDRQAQRESEEQRLREVYGDNPAALAKATSALKNTWS
                     AEEQLRGSWMAGMKSGWGEWAESATDSFSQVKNAATQTFDGIAQNMAAMLTGSEQNWR
                     GFTRSVLSMLTEIFLKQAMVGIVGSIGSAIGGAFGGGASASTGTAIQAAAANFHFATG
                     GFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYATGGYVGGTGSPAQMR
                     RSEGIRFEQNNNVVIQNDGTNGLPGPQMLKAVYDMARKGARDEIQAQMRDGGLFSGGG
                     R"
     gene            12269..12598
                     /locus_tag="OQQ72_003047"
     CDS             12269..12598
                     /locus_tag="OQQ72_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012697.1"
                     /translation="MKTFHWKVKPGMDVASAPSVRKVRFGDGYSQRAPAGLNADLKTY
                     SVTLSVPRWEATALESFLAEHGGWKSFLWTPPYEWRQIKVTCAKWSSRVSMLRVEFSA
                     EFEQVVN"
     gene            12598..>12879
                     /locus_tag="OQQ72_003048"
     CDS             12598..>12879
                     /locus_tag="OQQ72_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS2012698.1"
                     /translation="MQDIRQETLNECTRAEQSASVVLWEIDLTEVGGERYFFCNEQNE
                     KGEPVTWQGRQYQPYPIQGSGFELNGKGTSTRPTLTVSNLYGMVTGMVED"
BASE COUNT         2948 a         3060 c         4140 g         2731 t
ORIGIN      
        1 actcagctgc tgaagatttt atgaaatctc atgttgagcc aacgataagg gatgttcctg
       61 cattgctgga gctggctcca tggttcggaa gaaaacaccg cgataatacg ctcaccctga
      121 agcgtttttc ctccggtgtg ggtttctggt gtctgggggg agcggcagca aaaaactacc
      181 gtgaaaaatc cgtggatgtg gtttgttatg acgagctttc ctcgttcgaa ccggatgttg
      241 aaaaagaggg ttcgccaacc ctgctggggg ataaacgtat tgagggctct gtatggccaa
      301 aatccattcg cggctcgacg cctaaaatca aaggctcctg ccagatcgaa aaagccgcta
      361 acgagtcggc acatttcatg cgtttttatg tgccctgtcc gcactgtggg gaggagcagt
      421 atctgaaatt tggcgatgat gcctcgcctt tcggtcttaa gtgggagaag aataagccag
      481 aaagtgtttt ctacctttgt gagcatcatg gctgtgtgat ccatcagtct gagcttgacc
      541 agagtaacgg gcggtggatc tgtgaaaaca cgggcatgtg gactcgtgac ggtctgacat
      601 ttttcagcgc cgcggataat gaaattccgc cgccgcgctc catcacattc catatctgga
      661 cggcgtacag tccgttcacc acctgggtac agattgtcta tgactggctg gatgcactga
      721 aagatcccaa cggcctgaaa acctttgtga acaccacgct gggcgagacc tgggaagagg
      781 ccgtgggcga aaaactcgat caccaggtgc tgatggataa ggttgtgcgt tacacggctg
      841 cggtgccttc ccgggtggtt tatctgacgg cgggcattga ctcgcagcga aaccgttttg
      901 agatgtatgt ctggggatgg gctccgggag aggaagcctt tctggtggat aaaatcatca
      961 ttatggggcg tcccgatgag gaagagacgc tgttacgtgt ggatgtggcg atcaacaaaa
     1021 aataccgcca tgcagacgga accgaaatga ccatttcccg tgtctgctgg gacaccgggg
     1081 ggatcgatgg cgaaattgtc tatcagaggt caaaaaaaca cggtgttttc cgggtgctgc
     1141 cggtaaaagg tgcatctgtt tatggcaagc cggtgatcac catgccaaaa acccgcaatc
     1201 agcggggcgt gtatctgtgc gaagtgggga cggacaccgc aaaagaaatt ctctatgccc
     1261 gtatgaaagc cgatcccacg cctgcggatg aagccacgtc gtatgccatc cgttttcctg
     1321 atgatccgga gattttttcg cagacagagg cgcagcaact ggtggcggaa gagcttgtgg
     1381 agaagtggga aaaaggaaag atgcgtctgc tgtgggataa caaaaagcgg cgtaacgaag
     1441 cgctggactg cctggtgtat gcctacgcgg cattacgtgt gtccgtgcaa cgctggcagc
     1501 ttgatctggc tgtactggca aaatcccggg aagaagagac gacccggcca acccttaaag
     1561 aactggcagc gaagctgtcc ggaggagtga atggttacag tcgctgaact gcaggcgctg
     1621 cgtcaggcgc gccttgattt attaaccggt aaacgggtgg tgtctgtcca gaaagatggt
     1681 cgcagaattg aatatacggc agcttctctg gatgagctta accgggcgat caatgatgcg
     1741 gagtcggtac tggggacaac ccgccgtcgc cgtcgtccgc tgggagtgag gttatgaaac
     1801 gaacgcctgt cctgattgat gtgaacggcg ttccgcttcg ggagagcctc agctacaccg
     1861 gtggcggtgc aggatttggc gggcaaatgg cagagtggtt gccaccctcg cagagtgccg
     1921 atgcggccct gctgcccgcg ttgcgtctgg ggaatgcccg tgcagatgat ctggtgcgca
     1981 ataacggaat agcggccaat gcggtggccc tgcataagga tcacattgtc gggcatatgt
     2041 ttctgattag ctaccgtccg aactggcgct ggctggggat gcgggagacc gcggcaaaaa
     2101 gttttgtcga tgaggtggag gcggcctggt cagaatacgc agaagggatg tttggtgaga
     2161 tcgacgtgga agggaaacgc acgtttacgg aatttatccg tgaaggtgtg ggcgttcatg
     2221 cgtttaacgg cgaaatcttt gtgcagccgg tctgggatac ggagagtacg caactgtttc
     2281 gtacgcgttt taaagccgtg agtccgaaac gggtggacac gccaggacac ggtatcggga
     2341 accgttttct gcgggccggt gtggaggttg atcgatatgg ccgtgccgtt gcgtaccata
     2401 tctgtgagga tgattttcct cgctccggga gtggacgatg ggaacggatc ccgcgtgaac
     2461 tacccaccgg gcgtccggcc atgctgcata ttttcgagcc ggtggaggac gggcagaccc
     2521 gtggagccaa tcagttttac agcgttatgg aacggctgaa gatgctggat tccctgcagg
     2581 caacacagct tcagtcggcc atagtgaagg cgatgtatgc agcgacgatt gaaagtgacc
     2641 ttgataccga aaaggccttt gaatatatcg ccggtgcgcc gcaggggcag aaggataatc
     2701 cgcttattaa tattctggat aagttctcca cctggtatga cacgaatagc gtgacgctgg
     2761 gcggtgtcaa aattccgcac cttttccccg gtgatgatct gaaacttcag accgcgcagg
     2821 attcagacaa tggattttcg gcgcttgaac aggcgctgct gcggtatatc gccgccggtc
     2881 ttggcgtttc ctacgaacag ttgtcccgtg attactcgaa ggtcagttac tcaagtgccc
     2941 gcgcatccgc caatgagtcg tggcgctatt ttatggggcg gcgaaaattt attgcgtccc
     3001 ggctggccac gcagatgttt tcctgctggc tggaagaggc acttcttcgg gggattattc
     3061 gtccgccacg ggcacggttt gatttttatc aggcgcgatc agcctggtca cgggctgagt
     3121 ggattggagc cggaagaatg gccattgacg ggctcaagga ggttcaggaa tcagtgatgc
     3181 gcattgaggc cggactgagc acgtatgaga aagagctggc gctgatgggc gaggattatc
     3241 aggacatttt ccgccagcag gtcagggaat ctgcagagcg ggaaaaagcc ggactctcac
     3301 gtccggtgtg gatagcgcag gcgtatcagc agcagatagc ggagagtcgc aggccggaag
     3361 aggagacaac accacgtgag acgtaatctt tcacacatta ttgcagcagc attcaatgaa
     3421 ccgctgcttc tggagcccgc ctatgcgcgg gttttctttt gcgcgctggg gcgcgagatg
     3481 ggggcagcaa gtctttcggt accgcaacag caggtacagc ttgatgctcc cgggatgctg
     3541 gctgaaacgg acgagtacat ggccggaggt aaacgaccgg cccgtgttta ccgggtggtg
     3601 aacggtattg cggtactgcc ggtgaccggc acgctggtgc accggctggg ggggatgcgg
     3661 ccattttccg gaatgactgg ctatgacggc attgtcgcct gtcttcagca ggcaatggca
     3721 gatagccagg tgcggggcat actgctggac attgacagtc cgggcgggca ggccgccggc
     3781 gcgtttgact gcgctgacat gatttaccgc ctccggcagc agaagccggt ttgggcactg
     3841 tgtaatgaca cggcctgttc tgcggccatg ctgctggcgt cggcctgctc ccgacggctg
     3901 gttacccaga catcccgtat cggttccatt ggcgtgatga tgagccatgt cagctatgcc
     3961 ggtcatctgg cgcaggccgg tgtggatatc acgctgattt actcaggggc gcacaaggtg
     4021 gatggcaatc agtttgaagc gttgccggca gaggttcgcc aggacatgca gcagcggatt
     4081 gatgcggcgc gccggatgtt tgccgaaaaa gtggcgatgt ttaccggtct gtctgttgat
     4141 gcagtcacgg gaacagaggc cgctgttttt gaaggtcagt ccggcattga ggccgggctg
     4201 gcggatgaat taatcaatgc gtcggatgcc atcagtgtga tggccacggc gctgaacagt
     4261 aatgtcagag gaggcactat gccgcaatta actgcaacgg aagccgccgt gcaggagaac
     4321 cagcgagtga tggggatcct gacatgccag gaagcgaaag gacgtgaaca gcttgccacg
     4381 atgctggcag ggcaacaggg catgagcgtt gaacaggccc gggcgattct ggccgcggcg
     4441 gcaccgcagc agccggtggc atccgcgcag agtgaagccg atcgcattat ggcgtgtgaa
     4501 gaagcgaacg gtcgtgaaca actggcggca acgctggcgg cgatgccgga gatgacggtg
     4561 gaaaaagccc gcccgatcct ggcggctgca ccactggcgg atgccgggcc ctcacttcgt
     4621 gatcagatca tggccctgga tgaggcaaaa ggggcagaag cgcaggctga aaaactggcg
     4681 gcctgcccgg gaatgaccgt ggagaacgcc cgggctgtgc tggctgcggg atcaggtaag
     4741 gccgaaccgg tctctgcatc cacaaccgcc ctgtttgaac atttcatggc gaatcattca
     4801 ccggcagcgg tgcggggtgg cgtgtcacag acgtcagcag acggtgatgc ggacgtgaaa
     4861 atgctcatgg ccatgccatg aagtcagtgc tgaccatcaa tatgaggttt taacaaaatg
     4921 gtgacgaaaa ccatcactga acagcgtgcg gaagtacgta tttttgccgg taatgatccg
     4981 gctcataccg ccacaggcag cagcgggatt tcttctgcaa caccggctct gacgcccctg
     5041 atgctggatg aagccaccgg gaaactggtg gtctgggatg gacagaaagc cggtagtgcg
     5101 gttggcatac tggtactgcc gcttgaaggc acagagacgg tgctgaccta ttacaagtcg
     5161 gggacctttg cgacggaggc aatccgctgg cctgacagtg tggatgaaca caaaaaggca
     5221 aatgcctttg ccggcacagc cctgagtcac acggctctgc cgtaacacgt tatcaggcca
     5281 ccatggcggc ctgactgatt tctgaatgaa aggaactgat ttatgggatt gtttacgacc
     5341 cgccagttac tcggttatac cgaacaaaaa gtgaaatttc gtgcgctgtt tctggagctg
     5401 tttttccgcc gtacggtgaa tttccacacc gaagaggtga tgctggacag aattaccgga
     5461 aaaacgccgg tggcggccta tgtctccccg atcgttgaag gaaaagtgct tcgccatcgc
     5521 ggtggtgaaa cccgcgtgtt acgtccgggc tacgtcaagc ccaaacacga atttaattac
     5581 cagcaggcgg ttgagcgcct tcctggtgaa gatccggctc agctgaacga cccggcctac
     5641 cgtcgtctgc gtatcattac cgataacctc aaacaggaag agcacgccat tgtccaggtg
     5701 gaagaaatgc aggcggtgaa tgccgtgctg tatggcaaat acaccatgga aggggatcag
     5761 tttgatactg tcgaggtgga tttcgggcgc tctgaaggaa ataacattga gcaggctgac
     5821 ggtaaaaaat ggtctgagca ggaccgtgat acgtttgatc cgacgcatga tattgacctc
     5881 tactgcgatc aggccagcgg ccttgtgaat atcgccatta tggacggtac ggtctggcgt
     5941 ctgctgaatg gctttaagct gttccgcgaa aaactggata cccgtcgcgg ctcaaattca
     6001 caactcgaaa cggcagtgaa agatctgggc gcagtggtgt ccttcaaggg gtattacggc
     6061 gatctggcca ttgtggtggc gaaaacgtct tatgtggcag aggacggtac cgaaaaacgt
     6121 tatctgccgg agggcatgct ggtgctgggg aatacggcgg cagaggggat tcgttgctat
     6181 ggtgccatta aggatgcaca ggcgttgtct gaaggagtgg tggcttcttc ccgttacccg
     6241 aaacactggc tgaccgtggg cgatccgtcc tgtgaattca ccatgacgca gtccgctccg
     6301 ctgatggtgc tgccggatcc ggatgagttt gtggtggtac aggtgaaata atccgtgagc
     6361 gggggcgaaa tgcccccgtg tcttttttca caggaggctg agatggcaac aaaagaagaa
     6421 aatctgaatc gtcttcgtca actggctggc ctgctggggc gcgaggcgga tatgtcgggg
     6481 agtgctgcgg atattgctca acgtgtgtct gagtgggaag aggagcttgc tgtttccccg
     6541 gagggcatta tgcactctga tgagagcggg gctgatcaaa atcacacaga cgatggtgag
     6601 cagttgaaca acacggatgc tccggatgat gttaaagccg tccgggtacg gaagtgcctg
     6661 caagtaatgg ggtattgccc ggagacaggt cgtcccgttg agctggcgtt acggggtatg
     6721 cgtgttctgg tgccatcatc actggcaacg gccatgatac agcacggaac ggctgaatat
     6781 gcgtgatttt cagaatgcct ttgatgctgc cctcgccggg gtagacagta cgatcgttga
     6841 agtgatgggg ctctgtgcgc agttcacctc gggggcacag tgtggcagcg aagttcaggg
     6901 ggtttttgat gatccggagt cgctggggtt tgccggtggc ggggtccgta ttgaaggaag
     6961 cagcccgtca ttatttgtgc ggacggatac ggttcgtgcc gtgcggcgtg gtgacacgct
     7021 gaccattaat ggtgagatat tctgggtgga tcgtgtttct ccggatgacg ggggcagctg
     7081 ttatctctgg ctcaaccgtg gtcaaccacc cgcagttaac cggcgacgat aaacgcaggg
     7141 tgaaattatg gcgataaaag ggcttgatca ggcgattgac aatctgagcc gggttcgtaa
     7201 aaacgccatt ccggcggctt cagcaatggc cattaaccgc gtggccacaa cggcgattaa
     7261 tcagtcttca tcacaggttg cccgggagac aaaggttcgc cggaaactgg ttaaggaacg
     7321 gtccagactg aaacgggcga cggtcagaaa tccgaatgcc agaattatcg ttaaccgcgg
     7381 tgatctccct gtgattaagc tggggatcag gatgctgggg cgtcgcccga acagcatact
     7441 taaagccggt cagcatcggt atcagcgggc atttattcag cgattaaaaa atggtcgctg
     7501 gcatgtcatg cagcgtgtgg ccgggaaaaa ccgttacccc attgatgtgg tgaaaatccc
     7561 gatggcggcc ccactgaaac aggcatttga tgagaatgtt gaccgtatcc ggcgtgaacg
     7621 cctgcctaaa gaactggcat acgcgctgaa acaacaactg aggattgcaa taaaacgatg
     7681 aaacacactg acattcgtgc cgcagtgctg gatgcactcg agcagcatga acacggggcg
     7741 acgctgtttg atggtcgccc cgttgttttt gacgaagagg attttcctgc gatcgcggtt
     7801 tatctgacgg atgcagagta taccggtgaa gagctggatg cagatacctg gcgggccacg
     7861 ctgcatattg aggtgttttt accggcacag gtaccggatt cagagcttga tcagtggatg
     7921 gaaagccgga tttacccggc gatgaccgcg atcccggcac tggcaggact gattaccacg
     7981 atggttacgc agggctatga gtatcgtcgt gatgacgata tggcgttatg gagttctgca
     8041 gatctgactt attccattac atacgagatg tgaggacgat atggcaacac caaatcccct
     8101 tgagccggta aaaggtgccg gtaccactct gtgggtttac aacggcaagg gtgatgctta
     8161 tgcaaacccg ttgtcagacg atgactggca gcgactggct aaggtgaagg atctgacgcc
     8221 gggcgagatg acggcagaat cctacgatga taactacctg gatgatgaag acgcggactg
     8281 gaccgcgacc gggcaggggc agaaatctgc aggtgatacc agttttacgc tggcctggaa
     8341 accgggagag gaaggccaga aagggcttat aggctggttt gaaagcggcg atgtccgggc
     8401 ctataaaatc cgttttccga atggcacggt ggatgtgttt cgtggctggg tcagcagtat
     8461 cggtaaggcc gtgacggcga aagaagtgat cacccgcacg gtgaaagtca ctaacgtggg
     8521 taaaccttct gtagcggaag aacgcagcaa aattacgccg gtcagtgcga ttaaggtgac
     8581 gccgacatcc ggtacggtgg caaaagggaa aacaaccacc ctgacggttt cttttgagcc
     8641 ggaaagtgca accgacaaga cgttcagagc ggtttccgcc gatccgtcga aagccaccat
     8701 tagtgtgaaa gatatgacaa ttacggtaaa cggcgtggcg acaggtaagg tgcagatccc
     8761 tgtggtgagc ggaaatggtc agttcgccgc agtggctgaa gtcaccgtta ctgaagcggg
     8821 cgctgcaggg taaacggagg taatacatgt ttctgaaaac agaacaattt gaatataacg
     8881 gtgtgtctgt cacgctttcc gaattgtctg cgctgcagcg tatcgagcat cttgccctcc
     8941 tgaaacggcg tgcagaacag gcagaatcct gcggcaacct gcaggtaagc gtggaagatc
     9001 tcgtcagaac cggcgcgttt ctggtggcga tgtccctgtg gcataaccat ccacagaaaa
     9061 cgcagtcacc gtcaatgaat gaggccgtga tgaagataga gcaggaagtg ctcaccacct
     9121 ggcctgccga tgccattgcc cgggcggaag acgtggtgtt gtgcctgtcc gggatgatcg
     9181 aagctgttcg tccggatact gatattactg aagtggcgaa aaataacacg ctgactgatg
     9241 atgatttttc tgcgggaaag tcttcgacgg cgagctgaac tttgccctca gactggcgcg
     9301 tgagatgggg agacccgact ggcgcgccat gcttgccggg atgacatcca ccgaatatgc
     9361 cgactggcac cgtttttacc gcacgcatta ttttcaggat acccagctgg atatgcattt
     9421 ttccgggctg acgtacgctg tactcagcct gtttttttgc gatccggata tgcatccctc
     9481 tgatttcagt ctgcttgtct cccggcatga ggaagagcag gtggagaggc cggatgagga
     9541 caaaatgctg atgcagaaag cggcaggact tgccggaggc gtccggttcg gtggggacgg
     9601 agggcgcgat attttatcgt ctgcggatgt ggcggatgtc atggtggatg atgccgcatt
     9661 aatgatggct tcagcgggga ttccgggagg tgtgagatat gtcccagccg gttggtgatc
     9721 ttgttattga cctgagtctg gatgctgtcc gtttcgatga gcagatgagc cgggtaaggc
     9781 gtcatttttc aggtctggat accgacgcca gaaaaaccgc cagtgctgtt gaacagggcc
     9841 tgagccgcca ggcgctggct gcacaaaaag ccgggatttc cgtcgggcag tataaagcgg
     9901 ccatgcgaac cctgcccgca cagtttacgg atatcgccac gcagcttgca ggtggtcaga
     9961 atccctggct gatcctgctg caacagggcg gtcaggtgaa ggactccttc ggcgggatga
    10021 tccccatgtt cagggggctt gccggtgcga tcaccctgcc gatggtcggg gtcacctcgc
    10081 tggcggtggc gacaggtgcg ctggtgtacg cctggtacca gggagattcc acgctttcag
    10141 cgtttaataa aaccctggtt ctttccggta atcagtccgg actgactgcc gatcgtatgc
    10201 tgactctctc aagagccggg caggcagcag ggctgacgtt taaccaggcg agagagtcac
    10261 tggcagccct ggtgaatgcc ggtgtgcgtg gtggtgaaca gtttgatgcc atcaaccaga
    10321 gtgtcgcgcg ttttgcgtct gcatccggtg tggaggtgga taaagtcgct gaagccttcg
    10381 ggaagctgac cactgacccg acgtcgggac tgatggcgat ggcgcgccag ttccgtaacg
    10441 tgacggcaga gcagattgcg tatgttgcac agctgcagcg ttccggagac gaggccgggg
    10501 cattgcaggc ggcgaacgat atcgccacga aaggctttga tgagcagacc cgtcgcctga
    10561 aagaaaacat gggaacactg gagacctggg cggataaaac agggaaggca ttcaaatcga
    10621 tgtgggatgc cattctggat atcggtcgtc ctgaatcctc agcggatatg ctcgccagtg
    10681 cgcagaaggc atttgatgag gcggataaaa aatggcagtg gtaccagagt cggagccagc
    10741 gccggggaaa gacctcctct tttcgtgcga accttcaggg ggcatgggat gaccgggaaa
    10801 atgcccgtct gggtctggca gcggccacgc tgcagtcgga tatggaaaaa gccggtgaac
    10861 tggcggcaag ggaccgggct gagcgtgagg cgtcacagct gaagtatacc ggagaggcgc
    10921 agaaggcgta tgagcgcctg cagacgccgc tggataaata taccgcccgt cagaaagagc
    10981 tgaataaggc cctgaaagac ggaaaaatcc tgcaggcgga ttacaacacg ctgatggcgt
    11041 cggcaaaaaa ggattatgaa tcgacgctga aaaagccgtc aggtgtgaag gtgtctgccg
    11101 gtgagcgcca ggaagaccgg gcgcatgcag ccatgctggc gcttgaaacc gagctcagga
    11161 cgctggaaaa acacagcggt gtgaatgaga aaatcagcca gcagcgccgg gatttatggg
    11221 aagcggaaaa tcagtatgtg gtcctgaaag aggccgccac gaaacggcag ttatctgagc
    11281 aggaaaaatc cctgctggct catgagaaag agacgctgga gtacaaacgc cagctggctg
    11341 agctgggaga caagattgaa caccagaagc ggctgaatga gctggcacag caggcggcgc
    11401 ggtttgaaca gcagcagagc gcgaagcagg cggcaatcag cgcaaaagcc cgcggcctca
    11461 ctgaccgtca ggcgcagcgg gagtcggaag agcagcgcct tcgtgaggtg tacggtgata
    11521 atccggctgc gctggcgaag gccacatctg cactgaagaa cacctggtct gcggaggagc
    11581 agcttcgtgg aagctggatg gccgggatga agtccggctg gggcgagtgg gcggaaagtg
    11641 cgacggacag tttttcgcag gttaaaaacg cggccacgca gacctttgac ggtattgcac
    11701 agaatatggc ggcgatgctg accggcagcg aacagaactg gcgtggtttc acccgttctg
    11761 tgctgtccat gctgacagag atttttctga agcaggcgat ggtggggata gtcgggagta
    11821 tcggcagcgc cattggcggt gctttcggtg gtggtgcgtc tgcctccacg gggacggcca
    11881 ttcaggctgc ggcggcgaac ttccatttcg cgaccggggg atttacgggg acggggggga
    11941 aatatgaacc tgcggggatt gttcatcgcg gggagtttgt cttcacgaag gaggcgacca
    12001 gccggattgg cgtgggaaat ctttaccggc tgatgcgcgg ctatgccacc ggcggttatg
    12061 tcggtggcac cggaagtccg gcgcaaatgc ggcgttcaga gggtatcaga tttgagcaga
    12121 acaacaacgt ggtgattcag aacgacggta cgaatggtct gccaggtcca cagatgctga
    12181 aggcagtgta tgacatggcc cgcaagggtg cccgtgatga aattcaggca cagatgcgcg
    12241 atggtggtct gttctccgga ggtggacgat gaagaccttc cactggaaag tgaaacccgg
    12301 tatggatgtg gcttcagccc cttccgtcag gaaagtgcgc tttggtgatg gctattccca
    12361 gcgagcgcct gccgggctga atgccgacct gaaaacgtac agcgtgacgc tttctgttcc
    12421 ccgttgggag gccacggcgc ttgagtcgtt tctggctgag cacgggggct ggaaatcctt
    12481 tctgtggacg ccgccttatg agtggcggca gataaaggtg acctgcgcaa aatggtcgtc
    12541 gcgggtcagt atgctgcgtg ttgagttcag cgcagagttt gaacaggtgg tgaactgatg
    12601 caggatatcc ggcaggaaac actgaatgaa tgcacccgtg cggagcagtc ggccagcgtg
    12661 gtgctctggg aaatcgatct gacagaggtc ggtggagaac gttatttttt ctgtaatgag
    12721 cagaacgaaa aaggtgagcc ggtcacctgg caggggcgac agtatcagcc gtatcccatt
    12781 caggggagtg gttttgaact gaatggcaaa ggcaccagta cgcgccccac gctgacggtt
    12841 tctaacctgt acggtatggt caccggtatg gtggaagat
//
LOCUS       DAJVUY010000122        12856 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.122, whole genome shotgun sequence.
ACCESSION   DAJVUY010000122 DAJVUY010000000
VERSION     DAJVUY010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12856
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.122"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1514
                     /locus_tag="OQQ72_003049"
     CDS             <1..1514
                     /locus_tag="OQQ72_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
                     /protein_id="HCS2012699.1"
                     /translation="PPVTTFRADGPETPEEEKGYWFHAYQPEDLCTIHNPMGDLQDFI
                     ALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKISKDIESGIPGYWQGQ
                     VLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENLHALKEKRLNGMPKT
                     TPKSGQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSITPPLKNYNERLHNTN
                     LFNPKYQKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFSLLMKTIKAFSFGGD
                     LQTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNHQQDEQLAMAYMAALP
                     FSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQLYNEFHALYIDKAGI
                     WSAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEGTWPNKLQPGIYKNM
                     GSNSVNIIINNTRKIILPGKVFTLRGGTLNINIPGRSALLLGKTGEPPNYLYL"
     gene            1850..2827
                     /gene="csiD"
                     /locus_tag="OQQ72_003050"
     CDS             1850..2827
                     /gene="csiD"
                     /locus_tag="OQQ72_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HCS2012700.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            2847..4115
                     /gene="lhgO"
                     /locus_tag="OQQ72_003051"
     CDS             2847..4115
                     /gene="lhgO"
                     /locus_tag="OQQ72_003051"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HCS2012701.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4138..5573
                     /gene="gabD"
                     /locus_tag="OQQ72_003052"
                     /pseudo
     CDS             4138..5573
                     /gene="gabD"
                     /locus_tag="OQQ72_003052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5587..6853
                     /gene="gabT"
                     /locus_tag="OQQ72_003053"
                     /pseudo
     CDS             5587..6853
                     /gene="gabT"
                     /locus_tag="OQQ72_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7091..8452
                     /gene="gabP"
                     /locus_tag="OQQ72_003054"
     CDS             7091..8452
                     /gene="gabP"
                     /locus_tag="OQQ72_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005114089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HCS2012702.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIARATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYVPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAA
                     GIS"
     gene            8511..9173
                     /gene="csiR"
                     /locus_tag="OQQ72_003055"
     CDS             8511..9173
                     /gene="csiR"
                     /locus_tag="OQQ72_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HCS2012703.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9174..9623)
                     /gene="kbp"
                     /locus_tag="OQQ72_003056"
     CDS             complement(9174..9623)
                     /gene="kbp"
                     /locus_tag="OQQ72_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HCS2012704.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(9707..9865)
                     /locus_tag="OQQ72_003057"
     CDS             complement(9707..9865)
                     /locus_tag="OQQ72_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCS2012705.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10048..10347
                     /locus_tag="OQQ72_003058"
     CDS             10048..10347
                     /locus_tag="OQQ72_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2012706.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10357..10881
                     /gene="ygaP"
                     /locus_tag="OQQ72_003059"
     CDS             10357..10881
                     /gene="ygaP"
                     /locus_tag="OQQ72_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HCS2012707.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDRIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(10928..11332)
                     /gene="stpA"
                     /locus_tag="OQQ72_003060"
     CDS             complement(10928..11332)
                     /gene="stpA"
                     /locus_tag="OQQ72_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HCS2012708.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            11999..12448
                     /gene="alaE"
                     /locus_tag="OQQ72_003061"
     CDS             11999..12448
                     /gene="alaE"
                     /locus_tag="OQQ72_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HCS2012709.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12485..12829)
                     /locus_tag="OQQ72_003062"
     CDS             complement(12485..12829)
                     /locus_tag="OQQ72_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HCS2012710.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLADPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3201 a         3157 c         3283 g         3215 t
ORIGIN      
        1 tccctccagt gacaactttc cgcgccgacg gaccagaaac tcccgaagaa gaaaaaggtt
       61 actggtttca tgcttatcaa cccgaagatc tttgtaccat ccataaccca atgggagatt
      121 tgcaggattt tatcgcattg gttaaagatg ctaaaaaatt tggtatcgat atcattcctg
      181 attatacatt taactttatg ggaatcgggg gtagtggtaa aaatgacctg gattatccct
      241 ctgctgatat acgagcgaag atcagtaaag atatagaaag cggtatccct ggctattggc
      301 aaggtcaggt tttgattcca ttcattaaag atccagtaac aaaagaacgt aaacaaatcc
      361 atccagaaga tatacatctc actgcaaaag acttcgaagc aagtaaagat aacatctcta
      421 aggatgaatg ggaaaacctc catgcattaa aagaaaagcg tttaaatgga atgcctaaaa
      481 caacacccaa aagtggccag gttattatgt tgcaaaatca atacgttcga gaaatgcgaa
      541 aatatggcgt acgaggttta cgttatgatg cggcaaaaca ctcaaaacat gaacaaatag
      601 agaggtcgat aaccccaccg cttaaaaatt ataatgagcg gttacacaat actaatttat
      661 ttaacccaaa atatcaaaaa aaagccgtta tgaattacat ggaatacctg gtaacttgtc
      721 agttggatga acaacaaatg tcatcactgc tttatgagag agatgattta agtgccattg
      781 atttttcttt actcatgaaa acgataaaag ccttttcatt tggtggagat ctccaaaccc
      841 ttgcatcaaa accgggttcc acaatctcaa gtatcccatc agaaagacgg atattgatta
      901 acattaacca cgattttcct aacaatggta atcttttcaa tgactttcta tttaaccatc
      961 aacaagatga acaattagca atggcatata tggccgctct cccgttcagc agacctttag
     1021 tttactggga tggccaagta ttaaaatcaa cgactgaaat taaaaattat gatgggtcca
     1081 cgcgtgtcgg cggtgaggcg tggcttaata aaggttgctc tacctatcag cagctctaca
     1141 atgaattcca cgcattatat atagataaag caggaatatg gagcgcattt gagggtgtat
     1201 ttgcaactaa aaacgttctg gcctttagtc gtggggattc tgtgaacatt aatcactctc
     1261 ctcatgatgg gctagttata ataaataaag gaaacgaaga agttgaaggt acctggccta
     1321 acaaattgca acctggaata tacaaaaaca tggggagtaa tagcgttaac attattatta
     1381 ataatacccg aaaaattatc ctccctggta aagtatttac gcttagaggc ggaactctaa
     1441 atatcaatat tcctgggcgt agcgctcttc ttttagggaa aacaggagaa ccgccgaact
     1501 atctctattt ataatttaat gttatatctg ccccgataaa acggggcaga taatatgttt
     1561 agtttactaa cggtcatttt gcagtgaagc catttactgt tttttatcga ccagataatc
     1621 tgttctctaa tgttaactcc ccctaacctg ttgctttagt tattcatttc ctgtctcact
     1681 ttgccttaat accctacgtt aaatgttact aatttgttgt ttttgatcac aataagaaaa
     1741 caatatgtcg cttttgtgcg catttttcag aaatgtagat atttttagat tatggctacg
     1801 aaatgagcat cgccatgtca ccctacatct cataagagga tcgcttctga tgaatgcact
     1861 gatcgccgta caaaataacg ctgtcgattc aggccaggac tatagcggat tcactctcat
     1921 cccgtcggcg caatccccgc gtctgctgga actcaccttc accgaacaga cgaccaaaca
     1981 gtttctcgaa caggttgccg aatggcccgt gcaggcgctg gagtacaaat cgtttctgcg
     2041 ttttcgggta ggcaaaattc ttgacgatct gtgtgcgaat cagctgcaac cattgctgtt
     2101 gaagcccctg ctaaaccgtg ctgaaggtgc gctgttgatc aatgcggtgg gtatcgatga
     2161 tgtggcgcag gcagatgaga tggtgaagct ggcaacggcg gtagcgcatc tgattggtcg
     2221 ctcaaatttc gatgcgatga gcggtcagta ttacgcgcgt ttcgtggtga aaaatgtcga
     2281 taactcagac agctatctgc gtcagccgca ccgcgtgatg gaactgcaca acgacggcac
     2341 gtatgtcgaa gagatcaccg attacgtgct gatgatgaaa atcgatgagc aaaacatgca
     2401 gggtggaaat tcgttgctgc tgcatctcga tgactgggaa catctggacc actatttccg
     2461 ccatccactg gcgcgtcgcc cgatgcgctt tgccgcgccg ccgagcaaaa acgtcagcaa
     2521 agatgttttc catccagtgt tcgacgttga tcaacagggt cgcccggtga tgcgctatat
     2581 cgaccagttc gtccagccaa aagattttga agaaggcgtg tggttgagcg agctttccga
     2641 tgccattgaa accagcaaag gcattctttc tgtacccgtt cccgttggca aattcctgtt
     2701 gataaacaac ctgttctggc tgcacggtcg cgaccgcttt actccgcacc cggatctgcg
     2761 ccgtgaactg atgcgtcagc gtggctattt cgcttacgcc actcaccact accagacgca
     2821 tcagtaagcg caaaggaatt gagcggatgt atgattttgt gattattggc ggcggcatca
     2881 tcggcatgtc gaccgccatg caactgattg atgtttatcc ggatgcccgc attgcgttgc
     2941 tggaaaaaga gtccggcccg gcctgtcacc agacgggcca caacagcggc gtgatccatg
     3001 ccggggtcta ttacacgccc ggcagcctga aggcgcagtt ttgcctggcg ggaaaccgcg
     3061 ccaccaaagc cttttgcgat caaaacgaca ttcgctatga caactgcggc aagatgctga
     3121 tcgccacgtc cgatctcgaa atggaacgga tgcgcgcgtt gtgggaacgc acggcggcga
     3181 acggtatcga gcgcgagtgg ttaaacgccg aggaactgcg cgagcgcgaa ccgaatatca
     3241 ccgggctcgg cggcattttt gtgccgtcca gcggcattgt cagctatcgc gaagtcacag
     3301 cggcaatggc aaaaatcttc caggccagag gcggtgagat tatttataac gccgaagtca
     3361 gcgccctcag tgagcataaa aacggcgtgg tcgtccgaac ccgtcagggc ggcgaatatg
     3421 aagcatcgac gctgattagc tgttccgggc tgatggctaa ccggctggtg aaaatgctcg
     3481 gcctcgaacc gggttttatt atctgcccgt tccgtggcga gtatttccgc cttgcgccgg
     3541 agcataacca gattgttaac catctgattt accccatccc tgacccggca atgccgtttt
     3601 tgggcgtgca tctcacccgc atgatcgacg gcagcgtgac cgtcgggcca aacgcggtgc
     3661 tggcttttaa acgcgaaggc tatcgcaagc gcgacttctc atttagcgac acgctggaaa
     3721 ttttaggctc gtcggggatt cgccgggtgc tgcaaaacca tctacgctca ggactgggcg
     3781 agatgaaaaa ctcgctgtgc aaaagcggct atctgcggct ggtgcaaaag tattgtcccc
     3841 ggctttcgtt aagcgatctc cagccctggc ccgccggtgt gcgggcgcag gcggtatcgc
     3901 cggacggcaa gctgattgac gattttctgt ttgtcaccac cccgcgcacg atccacacct
     3961 gcaatgcgcc ctccccggca gcgacatcag caattcctat tggtgcgcat attgtcagca
     4021 aggtacaaac gctgttggca agccagagta accccggacg cacgctgcga gcgacacgta
     4081 gtgtggatgc cttacacgcc gcatttaatc aataaccttt gaaaacagga cgtaacaatg
     4141 aaacttaacg acagtaactt attccgccag caggcgttga ttaacgggga atggctggac
     4201 gccaacaatg gcgggatcat cgacgtcacc aatccggcga acggcgacaa gctgggtagc
     4261 gtgccgaaaa tgggcgctga tgaaacccgc gccgctatcg acgccgccaa ccgcgccctg
     4321 cccgccaggc gtgcgctcac cgccaaagaa cgcgccaaca ttctgcgcaa ctggttcaat
     4381 ttgatgatgg agcatcagga cgatttagcg cgcctgatga ccctcgaaca gggcaaacca
     4441 ctggccgaag cgaaaggcga aatcagctac gctgcctctt ttattgagtg gtttgccgaa
     4501 gaaggcaaac gtatttatgg cgataccatt cccggtcatc aggccgataa gcgcctgatt
     4561 gttatcaagc agccgattgg cgttaccgca gctatcacgc cgtggaactt cccggcggcg
     4621 atgattaccc gtaaagccgg tccggcgctg gcggcaggct gcaccatggt gctgaagccc
     4681 gccagtcaga caccgttctc tgcgctggcg ctggcggagc tggcgattcg cgcgggcatt
     4741 gcggctggcg tgtttaacgt ggtcaccggt tcggcaggcg cggtcggtaa tgaactgacc
     4801 agcaacccgc tggtacgcaa actgtcgttt accggttcga ccgaaattgg ccgacagtta
     4861 atggaacagt gcgcgaaaga catcaaaaaa gtgtcgctgg agctgggcgg caacgcgccg
     4921 tttatcgtct ttgacgatgc cgatctcgat aaagccgtgg aaggcgcgct ggcctcgaaa
     4981 ttccgcaacg ccgggcaaac ctgcgtctgc gccaaccgtt tggcgtgtat gaccgctttg
     5041 ccgaaaaatt gcagcaggcg gtgagcaaac tgcacatcgg cgacgggctg gataaaggcg
     5101 tcaccatcgg gccgctgatc gatgaaaaag cggtagcaaa agtggaagag catattgccg
     5161 atgcgctgga gaaaggtgcg cgtgtggttt gcggcgctaa agcggatgaa cgcggcggca
     5221 acttcttcca gccgaccatt ctggtggacg tgccggccaa cgccaaagtg tcgaaagaag
     5281 agacgttcgg ccccctcgcc ccgctgttcc gctttaaaga tgaagccgat gtgattgcgc
     5341 aagccaatga caccgagttt ggccttgccg cctatttcta cgcccgtgat ttaagccgcg
     5401 tcttccgcgt gggcgaagcg ctggagtacg gcatcgtcgg catcaatacc ggcattattt
     5461 ccaatgaagt ggccccgttc ggcggcatca aagcctcggg tctgggtcgt gaaggttcga
     5521 agtatggcat cgaagattac ttagaaatca aatatatgtg catcggtctt taactggaga
     5581 atgcgaatga acagcaataa agagttaatg cagcgccgca gtcaggcgat tccccgtggc
     5641 gttgggcaaa ttcacccgat tttcgctgac cgcgcggaaa actgccgggt gtgggacgtt
     5701 gaaggccgtg agtatcttga tttcgcgggc gggattgcgg tgctcaatac cgggcacctg
     5761 catccgaagg tggtggccgc ggtggaagcg cagttgaaaa aactgtcgca cacctgcttc
     5821 caagtgctgg cttacgagcc gtatctggag ctgtgcgaga ttatgaatca gaaggtgccg
     5881 ggcgatttcg ccaagaaaac gctgctggtt acgaccggtt ccgaagcggt ggaaaacgcg
     5941 gtaaaaatcg cccgcgccgc caccaaacgt agcggcacca tcgcttttag cggcgcgtat
     6001 cacgggcgca cgcattacac gctggcgctg accggcaagg tgaatccgta ctctgcgggc
     6061 atggggctga tgccgggtca tgtttatcgc gcgctttatc cttgcccgct gcacggcata
     6121 agcgaggatg acgctatcgc cagcatccac cggatcttca aaaatgatgc cgcgccggaa
     6181 gatatcgccg ccatcgtgat tgagccggtt cagggcgaag gcggtttcta cgccgcgtcg
     6241 ccagccttta tgcagcgttt acgcgctctg tgtgacgagc acgggatcat gctgattgcc
     6301 gatgaagtgc agagcggcgc ggggcgtacc ggcacgctgt ttgcggtgga gcagatgggc
     6361 gtggcgccgg atcttaccac ctttgcgaaa tcgatcgctg gcgggcgtca ccgggcgcgc
     6421 ggaagtgatg gacgctgttg caccgggcgg tctgggcggc acctatgccg gtaacccgat
     6481 tgcctgcgtg gctgcgctgg aagtgttgaa ggtgttcgag caggaaaatc tgctgcaaaa
     6541 agccaacgat ctggggcaga agctaaaaga cggattgttg gcgatagccg aaaaacaccc
     6601 ggagatcggc gacgtacgcg ggctgggagc gatgattgcc atcgagctgt ttgaagatgg
     6661 cgatcacagc aaaccggacg caaaactcac cgccgggatc gtggcacgcg cccgcgataa
     6721 gggcctgatt cttctctcct gcggcccgta ttacaacgtg ctgcgcatcc ttgtactgct
     6781 caccattgaa gacgctcaga tccgtcaggg tctggagatt atcggtcagt gttttgatga
     6841 ggcgaagcag tagcaccgtc cccatgcagg aggcgacgct gcgcgtcttg tccggcctac
     6901 gagaatccag gtcggataag gcgtttacgc cgcatccgac aatctgtacg tgaacaggaa
     6961 taaatctatg tcggccggat aatgcggagc cgctctccgg caaaaagaat caataacaat
     7021 taaacgcgtg acccggcgcg ggaaatgtcg gggcgctctc ccaagtgaca cactttcgag
     7081 aggattcagg atggggcaat catcgcaacc acatgagtta ggcggcgggc tgaaatcacg
     7141 ccacgtcacc atgttgtcta ttgccggtgt tatcggcgca agtctgtttg tcggttccag
     7201 cgtcgccatc gccgaagcgg gcccggcagt attactggcc tatctgttcg ccgggctact
     7261 ggtggttatg attatgcgga tgttggcgga aatggcggtt gccacgcccg ataccggttc
     7321 gttttccacc tatgccgata aagccattgg tcgctgggcg ggctatacca tcggctggtt
     7381 gtactggtgg ttttgggtac tggttatccc gctggaagcc aacatcgccg ccatgatcct
     7441 gcactcgtgg gttccaggca ttcccatctg gttattttcc ctcgtcatta cccttgcctt
     7501 aactggcagt aatttattaa gcgttaaaaa ctacggcgaa tttgagttct ggctggcgct
     7561 gtgcaaagtc atcgctatcc tggcctttat tttccttggt gcagtcgcaa ttagcggttt
     7621 ttacccttat gccgaagtga gcgggatctc aagattgtgg gatagcggcg gctttatgcc
     7681 caacggcttc ggtgcggtat taagcgcgat gttgatcacc atgttctcgt ttatgggcgc
     7741 agaaattgtc accattgccg ccgcggaatc cgacacgccg gaaaaacata ttgcccgcgc
     7801 cactaactcg gttatctggc gtatttctat cttctatttg tgctctattt ttgtcgtcgt
     7861 ggcattaatt ccgtggaata tgcccggact aaaagccgtc ggttcttatc gctcggtact
     7921 ggaattgctc aatattcccc atgcgaaatt aatcatggac tgtgtgatat tactttccgt
     7981 aaccagctgc ctgaactcgg cgctgtatac cgcttccagg atgctctact ccttaagccg
     8041 tcgcggagat gcgcctgcgg taatgggtaa aatcaaccgc agtaaaaccc cgtacgtggc
     8101 ggtgttactc tccaccggcg cggcattctt aacggtggtg gtgaactatt acgtgcctgc
     8161 gaaggtattt aaatttctga tcgacagctc cggcgctatc gccctgctgg tttatttagt
     8221 catcgccgtt tcacagttgc ggatgcgcaa aattctgcga gcagaaggaa gcgaaattcg
     8281 cttgcgcatg tggctttatc cctggctcac ctggctggtc atcggcttta ttacctttgt
     8341 gttggtagtg atgctattcc gcccggcgca acagttagaa gtgatctcca ccgacttatt
     8401 agcaataggg attatctgta ccgtgccaat tatggcggct ggaataagct gataatgtgg
     8461 caaaaaacac ccgttcataa tacgcgctga taataatcag gagtcacacc atgaccatta
     8521 cgtctctgga tggctatcgc tggctgaaga acgatattat tcgcggtaat tttcaaccgg
     8581 atgaaaaatt acggatgagt ttgctgacat cgcgttatgc acttggcgtt gggccgttgc
     8641 gggaagcact ttctcaactg gtggcggaac ggctggtcac ggtggtgaat caaaaagggt
     8701 atcgggtggc gtctatgtca gagcaggagc tgctcgatat tttcgatgcc cgcgccaata
     8761 tggaagcgat gttagtgagt ctggcgattg cccgcggtag cgatgagtgg gaggcagacg
     8821 ttctcgcaaa agcgcatctg ctcagtaagc tggaagcctg tgacgccagc gagaaaatgc
     8881 ttgatgagtg ggatctgcgt catcaggcgt ttcatacagc aattgtggcg ggctgtggtt
     8941 ctcactattt gctgcaaatg cgtgaacggt tgtttgatct ggcggcgcgc tatcgattta
     9001 tctggctgcg gcgaacggtg ctttcggtag aaatgctgga ggataaacac gatcagcacc
     9061 agaccctgac tgcggcggta ctggcgcgag ataccgcgcg cgccagtgag ttaatgcgcc
     9121 agcatttact gacgccaatt cccattatcc agcaggcgat ggctggcaat taactactct
     9181 tccggaatac gcaacacttg ccccggataa attttatccg ggctttttag catcggttta
     9241 ttcgcttcga agattttatt gtacagatta gcgttaccgt agacctgttt ggaaatggca
     9301 ctcagagtgt cgccagactt aacggtataa aactggctgg cagtggctgg tgtcgccgtt
     9361 ttcacctgat catcaacact ggcaataccg gaaatattcc ccaccgcaac aaggattttc
     9421 tccttcgcct cctgactcag gccgtcacca gtgaccgtcg ctttgccgtc ggcaatttga
     9481 atgttcactt tatcggcatc aggtataccg gttttgctca gatgctcctg caccttcttc
     9541 gcctgatcgt ctttatcgtg ctgacctgta accgcgtccc agagtttttc tccggcatct
     9601 ttcacaaaat tgaacagacc catagctacc tcattcgtta acggaaacac tcagaaagtg
     9661 tagcagagga acgcggcgcg ttaacgccgc gggggggagc acaggtttaa tcgcgggttt
     9721 gcacccagaa cgcgtgaatc aaaccgggga tatacccaag cagtgtcagc agaatattaa
     9781 taatgaacgc ccaaccgaac cctttaccga gcagcacgcc gagcggcggc agaatgatgg
     9841 tgatgacgat tctccagaaa cccatatgta ctccctataa gaaaattact cattgtttaa
     9901 aaagagattt tatctcttaa gcgtagtaat tttagcggag cctgccagtt tcagcttacg
     9961 cttttactct catttacgct gctgaggctg gtatatgttg catttttagt ttagagttta
    10021 cttaatttag aaaatactta aataaatatg actgaactcg cgcaattaca ggccagtgcc
    10081 gaacaggcag cggccttatt gaaagcaatg agccatccta aacgattgct gattctgtgc
    10141 atgcttagcg gttcccccgg caccagcgcg ggagagctga cgcgcattac cggactgagt
    10201 gcctctgcga catcacagca tctcgctcgt atgcgggacg aagggcttat cgacagccaa
    10261 cgggatgccc aacgcattct atattccatt aaaaatgagg cggtaaatgc cattatcgcc
    10321 accctgaaaa atgtctattg tccgtaagga gtcactatgg ctttgacaac catttcgccg
    10381 catgatgcac aagaattaat cgcacgcggc gcaaagttaa tcgatattcg tgacgctgat
    10441 gaatatcttc gtgaacatat tcctgaagca gatctggctc cattatccgt gctggaacag
    10501 tcaggtcttc cacctaaatt acgtcgcgag caaattatat tccactgcca ggcaggtaaa
    10561 cgcaccagta ataacgccga taaattagca gcgattgccg cccccgcaga aatattttta
    10621 ctcgaagata ggattgatgg ctggaaaaga gctggattgc cagtagcggt aaataaatct
    10681 caacccttgc cgttaatgcg ccaggtgcag atcgctgcgg gtggtttaat attaatcggc
    10741 gttgtactgg gttataccgt aaatagcggt ttcttcttat taagtggctt tgttggtgcc
    10801 gggttactgt ttgcaggaat cagcggtttt tgtggaatgg caaggttgtt agataagatg
    10861 ccgtggaacc aacgagcttg agaagcgacg ccggacgcgc cctagcagcg acatccggcc
    10921 tcagtaatta gatcaggaaa tcgtcgagag atttaccttc tgccagcgcc tgagcaattg
    10981 gcttcggtgt acggccctga ccggtccagg tcttagtttc accgttaaca tcagtgaatt
    11041 tatatttcgc cggacgcggc tggcgttttt taccagcacg tggtgcagca gcagagctat
    11101 tacccaataa ctcttccggg ttaattccgt cagctttcat cagctccagc caggtgctaa
    11161 ttttttcctg acgctcagcc agttcacgct gctgctgttc ttcttcttca cgtctttctt
    11221 tagtgacaac cctgaatttt tcgagcattt cttcaagaac gtcaatggag aattcgcgag
    11281 ccatcgcacg gagggttcga atgttattta aactttgtaa cattacggac ataataaaga
    11341 aaacctttta acgccaaaac aaaaaagtat ttcgtcgcgt agtgtaagcg atcacttatt
    11401 atatttccac aaaatttaat ctatttacag tcctgcgcga gattatttca gctgttattt
    11461 tctgaaactc tcagaataat ttcaagatta tatattagcc attttgatga gtaatttagg
    11521 ttattggtga acagagtggc gctctctgct cgctaactcc gcaagcctga taaaaccgaa
    11581 gtgaataaaa atgcaatata acagaataaa agaaaacacc cctcactggt gctttctgct
    11641 gttaatgtac attttctggc atcaaaaatg ctgtaaatga cccggtcacg acaaacaccg
    11701 aattctctac gcttatagcg ttacctcacc cccaaacttt cattagtgaa attaaaggca
    11761 aggtcatatc caattgattt aattgaaaat aaatcatatc ggcatgtaaa aatccacaat
    11821 gtacaaaaaa cgagctgtta cggaatattt tatctacaaa aactgactaa ataaaagttt
    11881 ttcactaatt gattagtcat agccagcgat atacgctatg cgaaaatgca gatggcaatg
    11941 agatccactg ctttcatctc cattaacatc ccattacgct ttattaagga gcattagcat
    12001 gttctcaccg cagtcacgct tgcgtcatgc agttgcagat acgttcgcga tggttgttta
    12061 ctgttctgtc gtgaacatgt gtattgaagt tttcctctcc ggaatgagct tcgaacagtc
    12121 tttttattcc agattggtag cgattccggt gaacatctta attgcatggc catacggtat
    12181 gtaccgcgat ctgtttatgc gcgcggcacg caaagttagc ccgtcgggct ggataaaaaa
    12241 tctggctgat atcctggctt atgtgacgtt ccagtcaccg gtgtatgtgg cgatcttgtt
    12301 agtggtgggc gcagactggc atcagattat ggcggcggtc agttcaaaca tcgttgtttc
    12361 gatgttgatg ggggcggttt atggctactt cctcgattat tgccgccgac tgtttaaagt
    12421 cagccgttac cagcaggtaa aagcctgact cttcttttcg cgactggcat cgccagtcgc
    12481 gtctttaact ggcttcgcca aataaaccat tcaaataacg ttcaagcgca acacgcgaac
    12541 tgaagccatg cgggataccg taatgctcgt gtcgctcgcc tgctaaatag agcggaaatt
    12601 gctggtaatg atcgcaagtt ttaatatcgg aagcggggtc agccagtgtt gaactgcgtt
    12661 cttttaatgt tggatgaatt accagagcgg tacgtcccat tcgcgcttcg cgattaacat
    12721 agacataatt ttccccacgg cggtaaccat acgctttctg ggttaccaca tcgacagtaa
    12781 aaccgacttt ttcaagtacg cgcgccacct cgtctggtcg taaatacata tttgatcctc
    12841 gttattttca accgcg
//
LOCUS       DAJVUY010000123        12649 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.123, whole genome shotgun sequence.
ACCESSION   DAJVUY010000123 DAJVUY010000000
VERSION     DAJVUY010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12649
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.123"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..314)
                     /gene="chbB"
                     /locus_tag="OQQ72_003063"
     CDS             complement(<1..314)
                     /gene="chbB"
                     /locus_tag="OQQ72_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HCS2012711.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAA"
     gene            complement(612..950)
                     /gene="osmE"
                     /locus_tag="OQQ72_003064"
     CDS             complement(612..950)
                     /gene="osmE"
                     /locus_tag="OQQ72_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HCS2012712.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAAK"
     gene            1152..1979
                     /gene="nadE"
                     /locus_tag="OQQ72_003065"
     CDS             1152..1979
                     /gene="nadE"
                     /locus_tag="OQQ72_003065"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HCS2012713.1"
                     /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            2209..3096
                     /gene="cho"
                     /locus_tag="OQQ72_003066"
     CDS             2209..3096
                     /gene="cho"
                     /locus_tag="OQQ72_003066"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HCS2012714.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMLLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(3056..3631)
                     /gene="ves"
                     /locus_tag="OQQ72_003067"
     CDS             complement(3056..3631)
                     /gene="ves"
                     /locus_tag="OQQ72_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HCS2012715.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3834..4304)
                     /gene="spy"
                     /locus_tag="OQQ72_003068"
     CDS             complement(3834..4304)
                     /gene="spy"
                     /locus_tag="OQQ72_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HCS2012716.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKPMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
     gene            complement(4634..5602)
                     /gene="astE"
                     /locus_tag="OQQ72_003069"
     CDS             complement(4634..5602)
                     /gene="astE"
                     /locus_tag="OQQ72_003069"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HCS2012717.1"
                     /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG
                     ALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM
                     NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV
                     LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG
                     QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM
                     PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS"
     gene            complement(5595..6938)
                     /gene="astB"
                     /locus_tag="OQQ72_003070"
     CDS             complement(5595..6938)
                     /gene="astB"
                     /locus_tag="OQQ72_003070"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HCS2012718.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG"
     gene            complement(6935..8413)
                     /gene="astD"
                     /locus_tag="OQQ72_003071"
     CDS             complement(6935..8413)
                     /gene="astD"
                     /locus_tag="OQQ72_003071"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HCS2012719.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKLRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQLETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(8410..9444)
                     /gene="astA"
                     /locus_tag="OQQ72_003072"
     CDS             complement(8410..9444)
                     /gene="astA"
                     /locus_tag="OQQ72_003072"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HCS2012720.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGDRVRL
                     VRLCAVEKTA"
     gene            complement(9441..10661)
                     /gene="astC"
                     /locus_tag="OQQ72_003073"
     CDS             complement(9441..10661)
                     /gene="astC"
                     /locus_tag="OQQ72_003073"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
                     /protein_id="HCS2012721.1"
                     /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC
                     NSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAP
                     LPPDIRHAAYNDINSASALIDDATCAVIVEPIQGEGGVVPASNAFLQGLRELCDRHNA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGDFPVGALLTTEECASVMTVG
                     THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG
                     LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR
                     FAAACEHFVSRGSS"
     gene            11107..11913
                     /gene="xthA"
                     /locus_tag="OQQ72_003074"
     CDS             11107..11913
                     /gene="xthA"
                     /locus_tag="OQQ72_003074"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCS2012722.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            12080..>12649
                     /locus_tag="OQQ72_003075"
     CDS             12080..>12649
                     /locus_tag="OQQ72_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS2012723.1"
                     /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG
                     LFGYSLYILLFIIATLFLLLGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW
                     LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP
                     YTLISALTTLPGIVIYTVMASDLANEGITL"
BASE COUNT         3070 a         3423 c         3100 g         3056 t
ORIGIN      
        1 gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc atcgactttg
       61 ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg ctggatttcg
      121 ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattctg acctttttca
      181 ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt ttctgcctgt
      241 gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa cagataaatg
      301 tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga cactccgcaa
      361 gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt tttttgtggc
      421 tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta taaattgtct
      481 ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg cgaagataat
      541 taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac tcaagctttc
      601 aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca ggtctgataa
      661 ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc tgctttacca
      721 tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat gctcacttca
      781 gacgaaggtt tacccgcaat ttgtgcaacc tgcgcccggc tcatgccttt tttgacgtct
      841 ttcaccacag gctgtacaaa ctggtctttg gtacgatcat aagccgtaca acccgccagc
      901 atggttaata ccgccgctgc actcagaatt cctgccatat tcttgttcat attccgtcct
      961 cttgtttatc agcgtgttag ataagcctgg aatacattgg gcgctttttc aagcccgtga
     1021 acgaaacggc tccgctttca gaggattcct gtatgacgtt ttatccacca ttcaacccgc
     1081 tgtcgcttgt cgtttcagta gcgacgggtt agctttaagg aagttttgtc ttttctgtct
     1141 ggaggggttc aatgacattg caacaacaaa taataaaggc gctgggcgca aaaccgcaga
     1201 ttaatgctga agaggaaatt cgtcgtagtg tcgattttct gaaaagctac ctgcaaactt
     1261 atccgttcat taaatcactg gtgctcggga tcagcggcgg tcaggactcc acgcttgccg
     1321 gtaagctgtg ccagatggcg attaatgagc tgcgccagga gaccggcaac gaatcactgc
     1381 aatttattgc cgtacgcctg ccctatggtg ttcaggccga cgaacaagat tgccaggatg
     1441 ccattgcctt tattcaaccg gatcgcgtat taaccgttaa tatcaagggc gcggtattgg
     1501 ccagcgaaca ggcgctgcgc gaagcgggca ttgaactgag cgattttgtc cgtggcaatg
     1561 aaaaagcgcg tgagcggatg aaagcacaat atagcattgc gggtatgacc agcggtgtcg
     1621 tggtgggcac cgatcatgca gcagaagcta ttaccggatt cttcactaaa tatggtgacg
     1681 gcggtacgga cattaatccg ctgtatcgtc tcaacaaacg tcagggtaaa cagttactgg
     1741 cggcattagc ttgcccggaa cacctttata agaaagcgcc aacggccgat ctggaagatg
     1801 atcgcccttc tctgccagat gaagtggcac tcggcgtgac ctatgacaat atcgacgact
     1861 atctggaagg gaaaaacgta cctcaacagg tcgccagaac aatagagaac tggtatctga
     1921 aaaccgaaca taaacgccgt ccgccaatta ccgttttcga tgatttctgg aaaaagtaat
     1981 aatttgcaca tattggattg tgcgaaaaag agtaatttgt tcacgccgga tgcggcgtga
     2041 acgccttatt cgacctataa aactatgcaa attcaataca ttgcaggagt cgaataggcc
     2101 tgacaggcgt agcacgtcag acggtgtaac ctttgtcatc gacccgcctc ttttttaatc
     2161 gcttcccgcc tgttacactg gatagataac cagcattcgg agtcaacagt ggtacggcgt
     2221 ttaacttctc cgcggctcga atttgaagct gcggcaattt atgaatatcc cgaacattta
     2281 cgttcattcc ttaatgactt acccacccga ccaggggtgt atctgtttca tggtgaaagt
     2341 gacaccatgc tgctctatat cggcaaaagc gttaacatcc gcagccgcgt cctttctcat
     2401 ttacgtaccc cggatgaagc cgccatgcta cggcaatccc gacggatcag ctggatatgt
     2461 accgccggtg aaatcggcgc tctgctcctt gaagcgcgat taatcaaaga acaacagccg
     2521 ctgtttaata aacggttgcg ccgcaatcgt cagctctgtg ccctgcaatt aaatgaaaag
     2581 cgcgtcgatg tggtgtatgc caaagaggtg gatttttcac gagcccccaa cctgtttggc
     2641 ctgtttgcca ataggcgcgc agctttgcaa gcattgcaga ccatcgctga tgaacaaaaa
     2701 ctttgttatg gcctgctggg actggaaccg ttaagtcgcg gtcgtgcatg ttttcgttca
     2761 gcgctaaaac gttgcgccgg agcatgctgc ggtaaagaga gccatgagga acatgcgcta
     2821 cgcttgcgcc agtctctgga gcgtttgcgg gtggtgtgtt ggccttggca aggggcggtg
     2881 gcgctgaaag aacagcaccc ggaaatgact caatatcata ttattcaaaa ctggctgtgg
     2941 ctgggggcgg ttaattcgct ggaagacgcg acaacgttaa ttcggacacc cgccgggttt
     3001 gatcacgacg gttataaaat tctttgtaag ccgctgcttt ccggtaacta tgaaattact
     3061 gaacttgatc cggcgaatga ccagcgagcc agttgatttc actgaacaac agtttacctt
     3121 gcggttgtaa aagccgcagg gtgtgcctgc catcgaacca gcacgcgccc tggtcggtag
     3181 tgagcaattt atcgcccagt tgccacgccc cgttaatcac aaacaccacc ccgccgcgtg
     3241 agccaaaggt agtaaacgta cgttcggcaa ttctgacttt cgccttacag acatccaggc
     3301 gtgtcatgat gttgaaatcc atcgacatct gcccttccgt cagtttcgct tttaccacct
     3361 ggtccgctgc aaaggcaaaa ggctgtaacg gttttaaggt atggttaaag cggtctgcgc
     3421 tttcaaggag catctcgccg ccttccagca acgtcactat cctttccatg ccgggaaaca
     3481 aagaaaactc cccattcgcc gcgatggatg caatgctggc acgccagtaa aaatcacgtt
     3541 ttgccggtgg gaaagtgcaa atttcgcgcg tttcaccggc agcatttcgc cacagattca
     3601 ccgacatttt acgcatatca aagtattcca tactcgctcc cggcccgttc ttttcattgt
     3661 tatcgttcag gtaaccgtgg atggttatcg gcaactcggg tgatttacgt tagtggtgat
     3721 caggcttttt ttacaactgt ttgagaagag aaaagaaaac cgccgatcct gtccaccgca
     3781 ttactgcaag gtagtggaca agaccggcgg tcttaagttt tttggctgaa agattattca
     3841 gcagttgcag gcattttacc ttttgccgct ggacgttctg tcagacgctt ctcaaaatta
     3901 gcattaaatt gctttttctg ttccggcgtc aggatgttgt aaattttgtt ctgggtttcc
     3961 atgtgcgcca gcatgttagc tttgcgctgt tcttccattt ttgcgatctg cgcttcagct
     4021 tttgctttat cgaaggtatc gctgacaatg atgtcatgca ttgcgcggcg ttcttccagc
     4081 ggcggacgtt tcatctggtc acgctggcct ttcatgattt cgcggatctg ctgtttctgc
     4141 gcgtcggtca ggttcaggtc tttgaacatc atgtcctgat gcggaccgaa cttgcctttg
     4201 tggtgcatca tcggcttcgc gtcagccggt gctgcggcat gggccaggtt agccgcgcca
     4261 agagccaggg tagaggcaac aaacagtgca gttaatttac gcatattcta tatccttcct
     4321 ttcagttatt tattacggct ttcttaagta gcgtgccgtg ttgacaagat taactttact
     4381 gactttagcg tcaattaatc agagcaacgg taaaacaatg aaagtgtaaa aaacactttt
     4441 gcgccaatta tggagaaaaa aagaaaattt gatggagagt gatgagagaa tattacaaca
     4501 caatgatttt gcagagatta tgaagaacta tactggatga ctggtgataa ataaagcaaa
     4561 taaccaggat taatctgtat taatttataa gaaagcaact taatacccgc agaatgattt
     4621 ctgcgggtaa gtattagctt attttttcga gcattaatcc cgcgcgtaat cccaacgcta
     4681 ccaacggatt agggaataac acatactcta catcatgggt tacggtaaaa cgttcctctc
     4741 cgtcctgcgc cagcaatgtt cctttctcaa acggcataaa attcagcgtg tcacttgcca
     4801 tatgcatttc gaaggacggc gagtggcgag taatttgcga aaccacccga taacggagcg
     4861 gcggtgttct cacgataccg acactctcac cagatagcag cgcagcaatt gcgctggcag
     4921 ttactgcaaa ctggcgaaga tcgttttgcc caaagggcaa cgctttgcca agttccagcg
     4981 tacaggccag cgcgccaaaa tgtctggcgc tgaaatgggt aaacgtacca ccaggttcct
     5041 gatggaacac cagcgcctcc agccccgccg cacccagcca cgtcagaaat ttctcgtccc
     5101 agggaatgtc gcgttgcggt aatacaccga actgcggatg caaggagcca cgaattgcgg
     5161 tatgtagatc aaggtgccag cgcacagatt ctttgccctg gtcataaaaa tcttccaggc
     5221 actgttccag ttcgcgcgcc cgacaggttt ctccgctttc agcaaatagc tgccaacgac
     5281 cgccaaacat tcgattcata tcgctatggc aataacgttt cccttgcttc agcgcaggag
     5341 gattcccgag gatcaccagc aaccgccaac gtaacgggat ctcgccgtga gatatcgcgc
     5401 caagcaacgc gtccagcatt tccacaggtg ccgtctcatt accgtggatc cccgcagaaa
     5461 tcaccagcgc gccttgcggt ggcgttaatg gcgtcagttc cagcacacca tcgcccagcc
     5521 agcgccagcg aacgccgttg atttctcgct cggtgataac cggtttttta cccgttaagg
     5581 tcagagcaag aaaattatcc attgccccct ccctcgcgct ggaacggata aaccgaaccg
     5641 agattcagta attggctcaa tacatccagt gcttcccgcc cttcgcgcag caattgcggg
     5701 tcggccagat cggcagcagt aagacgatcg cggtagtaac gatccaccca gtcattgagc
     5761 gcattaaaca aggtatcgtt catcatcacc gccggattca ccgcccggcg ttcttcttct
     5821 gtcaatacca cccgcaaccg caggcacgcc gggccgccgc cattcgccat gctttcacgt
     5881 aagtcaaaga cttttagttc gctaatcggg ttgtcagcgg caaggagttc attgagataa
     5941 ccccatactc cggcgtgttc ccgacactcc tgaggcagca ccaacatcat ggaaccatca
     6001 tcgcggctca acagttggct gttaaacaga taggtagaca ccgcatccga cacggaaacc
     6061 tgagttgccg gaacttctat cgccataaaa ccgttcaccc gcgcccgcag gtttgccagt
     6121 aactgtgact ggcgagcgaa cgcctgttgg tggcaaaaca gcacctggcg gttacttacg
     6181 gcaatcacgt cattatgaaa aacaccctgg tcgataacgt ccgggttttg ctgggcgaaa
     6241 atcacctgtt ggggattcac ctgattaagc cttgccaccg cctcgctggc ttcgcgagtc
     6301 tgtcgcgccg gataacggga aggccgggta tcattgcctt cttctcgccc gtagacaaaa
     6361 agttgcatac ccggctcacc gtaatgaccg ccgagacgat tgtggtttgc cgccccctca
     6421 tcaccgagca acgctacctg cggcaacgcc gaatggacgc taaatttctc ttcgtcgtta
     6481 aaaatagctt ttaacagcga ttcagtgacg ggcgcttcca gcgaacggtg aaatttattg
     6541 ttcaggttgg caacggtgag atgcactttg ccatccagcg tatcggcaga tggcgcgatc
     6601 gttgccgcat tggctaccca cattggcgaa gcggagctga cgctggaaag ccagtgcggt
     6661 gcctggcgtg caactttttc cagtacctgc tcatcgctac cactgaatcc caactgacgc
     6721 agcaccggaa taaacggacg ctcgtgcggc gggatcacgg cctgggggaa tcctgcatcg
     6781 gcaagggttt tcattttcag taagccctgt ttcgccgcca gtcgcgggtt agacacctga
     6841 aaacggtgac gggtagaggc ttcattacca aacgacaggc cagcgtaatg atgcgtcagc
     6901 cctaccagcc cgtcgaaatt aacttcccag gcgttcatcg caccacctca tcggaaaaat
     6961 ccagcccggg gttaagcgtt gcgggcaaag ttaacgagtc cgactccagg ctcgccatag
     7021 gccatgcgca gtaatctgcg gcataccagg cgctggggcg atggttaccg gatgcaccaa
     7081 tgccgccgaa tggcgcggta ctggcagcac cagtaagcgg tttgttccag ttaacaatcc
     7141 ccgcccgcgc ctccagcaac agttgatcga atttttcccg ttcgggggaa accagaccgc
     7201 aagagagtcc gaagcgagtg ttattcgcca ttagaatcgc ttcctcgaaa gaatcataac
     7261 gccagacgcg caataacggt ccgaacacct cttcatctgg tacgccagca acgcctgtca
     7321 tttcaatgat ccccggcgtc agcaacgatg tctctaattg taataagcgc ggcgcaagca
     7381 gggttcgtcc gcccatcgct tccagttgct gccaggcagt aaccacctgc tgtgcggcct
     7441 gttcagaaat cagcccgcca ataaacggct gcggttcgtc atcccagttg cccggcgtta
     7501 atcgctggct gacggcaacc agacgagcaa gaaacgcatc gccctgcgct ccgcttttga
     7561 gcaataaacg gcgggcgcag gtgcagcgtt gcccggctgt gacaaacgcc gactgaatgg
     7621 tcagatggac agccgcgtcg atatccgcca cctcatcgat aattagcgga ttattaccgc
     7681 ccatctcaag ggcgagaatt ttctccggct gaccggagag ctggcgatgc agctggtagc
     7741 cggtattggc gcgaccggta aacagcaaac cgtcgagatc ctccagcgca ctcagcgcct
     7801 gacccgtttc acgcccgccc tgcaccaggt tcagcacgcc cggcggcaag ccagcctgct
     7861 gccataaacg cattaccgct tcgccactcc acggtgtcag ttcgctgggt ttaaagataa
     7921 tggtgttacc tgccagcaat gccggaacga tatgtccgtt cggcaaatga ccagggaaat
     7981 tatacggccc aaacaccgcc agcacgccgt gcgggcgatg tcgcaggctc gccgcaccgt
     8041 ccggcatttc actacgctgc tcgccggtac gaacgtgata cgccttaatt gatatcgcga
     8101 ttttattgat catcgccgtc acttcggttg ccgcttccca gcgcagctta cccgtttctc
     8161 tggcaataat cgcggttaat tcggctttat tgctttccag caatccggca aagcgttcga
     8221 caacgacctg acgttcagcc aatgagagcc gcgcccagcg cggaaacgcc gcacgggctg
     8281 cccgacaagc ctgttcgacc tgagcggcat cggcatcatt gccttgccat aacacctcgc
     8341 ccgataccgg attacgcttc acacgcgatg cgccctggcc cgttatccag tcaccgttaa
     8401 tccataaagt catgctgttt tctccactgc gcacaggcgc accagacgaa cgcgatcccc
     8461 tgcgtggcat ttgagggcat ccagttgtgc ggcggttaaa atcaaacgct cggttgccgg
     8521 atcggtacgc gccagcacca cgcggaaatg gtgataattt tcattggcga ccaggcaggc
     8581 cggaaaatcg ccctgcgcag gctgcccttc tgccacttcc accagccgac ttttacggat
     8641 ggcgcgcacg cggtcgatgt cacactcaag cgttggcccg ccgtcgaaga tgtcgatata
     8701 gttgcggtaa cgaaaacctt ctttctccag caccgcgcgg gcaggcgcgg tttgcggatg
     8761 tacctgaccg atgacgtcct gggcttcctg ggataaaaag tgggtataga tcggatgttt
     8821 cggcatcagt tctgcaataa atgccttttg cccggtgccg cagagaaaat cggcgcggct
     8881 aaaatccatc gaaaagaagc gtttaccgag gctttgccag aacggtgaat agccgtgttc
     8941 gtcaatcacc ccgcgcattt cagcaaccac tttgtcatta aacttgtcgc gaaaagccgc
     9001 cataaacata aagcgcgatt tcgacagcaa atagccgttg ccctctttgc gccagtccgg
     9061 gtcgagaaac agcgtgcaca gctcgctgct gccggtgtga tcgttactaa gaaacagcgt
     9121 cggcaatgcg ttatagacat tcagctcttt tgaggcgtga accaacgtgc cgacccgata
     9181 gttgtgccag ggatcgttca gcccaaccgc cacctcaatg gcgcaaatcc ccgccacggt
     9241 gcctgtctcg ctatcttcca gcacgaacac atagccctgc tcgcttttgg gcagttcgcc
     9301 ttgccaggtt ttgattgccc tttcgatacg cgcggaaagc gtggcttcat tagcgggaag
     9361 cgacgtcagg ccgccgcccg ttttgctggc aagctgcatc agcgccgaga catctgagcg
     9421 ctcaacggga cggatgacca tcatgatgaa cctcggctaa caaaatgttc gcaagcagct
     9481 gcaaagcgat ccagtccggt cgtcacctct tcttcgctga cattgagcgc aggcgcaaaa
     9541 cgcaccacgt tgccacccgc aatcagtacc ataacgcctg ctttcgccgc ctcctgagag
     9601 atctgtttcg cttgtccggc gtaatcggca ttcagtacac agccaatcaa caaacctaag
     9661 ccgcgaactt cactgaacaa accgtagcgg tgattaatgg tattaagacg ctcaacaaac
     9721 cagtcgtgac gctgtttaac gccattaagc atctctggtg tgttgatgag ctccagcact
     9781 ttgcccgcca ccgccgaggc cagcggattg ccgccatagg tggtgccatg agtgccaacg
     9841 gtcatcacgc tggcgcactc ttcggttgtt aacaacgcac cgaccgggaa atcgccgccc
     9901 agcgctttgg cggtagttaa cagatcaggt gtcacgccgt agtgcatata ggcatacagt
     9961 tccccggtgc gcccgacgcc ggtttgtact tcatcaaaaa tcaacagcgc attgtggcgg
    10021 tcacacaatt cacgcagacc ttgtaaaaac gcgttgctgg ctggcaccac accgccttcc
    10081 ccctggatgg gttcgacaat caccgcacag gtggcgtcgt caatcagcgc gctggcagag
    10141 ttaatatcgt tatatgcagc atgacggata tctggtggca gtggcgcaaa atcctgtgaa
    10201 taggctggct gcccacccgc actgacagta aacagcgtgc gaccatgaaa cgcattttta
    10261 aacgccatga taccgctctt atggctgccg tagcggtcgt gagcgaattt acgcgccagt
    10321 tttagcgccg cttcgttggc ttccgcaccg gagttacaaa agaagacgcg atcggcaaac
    10381 gtggcgtcga tcaatttttt cgccagtcgc agtaccggct cgttggtgta accgttgccg
    10441 gtatgccaga acttactcgc ctgttcgttc agcgcttcac gcagttccgg atgcgcatgg
    10501 cccagcgcgt tcaccgcaat gccacccgcg aagtcgatat actctttccc ctgctgatcc
    10561 cacaagcgcg aaccttcgcc acgtaccggt ataaagggtg ccggagcgta aacaggtatc
    10621 atccattcat caaagttttc acgcgtaatt ggctgagaca tagcgacctc tacagtaaat
    10681 aattcgttat ttatatgtta acaataagta atgtttgcgc tgtaaatgta gattgcaggg
    10741 ttcgtgccag ccagtgataa aagtgcataa acggcggagg ctaactggaa atcaaggagt
    10801 tataaccaaa ccatatgcat ttaaagtgca tataaagtga atacgtttgc gatgtgggtg
    10861 aataaaaaga ataaaaaacg caatgttatg cagaagtaaa atataattct ggaattgtga
    10921 tcattgacga aatttactgg aaattactgc gccattctga cgcagcgcgc accaaaagcg
    10981 ggcatttttt gcgccatcgt tgacatcatt aacaaccatc gatcaaatca cttaacaaca
    11041 ggcggtaagc aacgcgaaat tctgctacca tccacgcact ctttatctga ataaatggca
    11101 gcgactatga aatttgtctc ttttaatatc aacggcctgc gcgccagacc tcaccagctt
    11161 gaagccatcg tcgaaaagca ccaaccggat gtgattggcc tgcaggagac aaaagttcat
    11221 gacgatatgt ttccgctcga agaggtggcg aagctcggct acaacgtgtt ttatcacggg
    11281 cagaaaggcc attatggcgt ggcgctgctg accaaagaga cgccgattgc cgtgcgtcgc
    11341 ggctttcccg gtgacgacga agaggcgcag cggcggatta ttatggcgga aatcccctca
    11401 ctgctgggta atgtcaccgt gatcaacggt tacttcccgc agggtgaaag ccgcgaccat
    11461 ccgataaaat tcccggcaaa agcgcagttt tatcagaatc tgcaaaacta cctggaaacc
    11521 gaactcaaac gtgataatcc ggtactgatt atgggcgata tgaatatcag ccctacagat
    11581 ctggatatcg gcattggcga agaaaaccgt aagcgctggc tgcgtaccgg taaatgctct
    11641 tttctgccgg aagagcgcga atggatggac aggctgatga gctgggggtt ggtcgatacc
    11701 ttccgccatg ctaatccgca aacagcagat cgtttctcat ggtttgatta ccgctcaaaa
    11761 ggttttgacg ataaccgtgg tctgcgcatc gacctgctgc tcgccagcca accgctggca
    11821 gaatgttgcg tagaaaccgg catcgactat gaaattcgca gcatggaaaa accgtccgat
    11881 cacgcccccg tctgggcgac cttccgccgc taatttagca gctctcctgg ctcaaactgg
    11941 gtcaggagaa ttaaccttga gaaaaatcaa caaactgtca gtaatgattt gttgcctgcc
    12001 gtcctttgtt ataccgtcac tgcgttttta gttgtctgac cacttctcta ttatcaagtt
    12061 tgatatagga aactccacga tgaatgctga gcgtaaattt cttttcgcct gtcttatttt
    12121 tgcgctggtc atttacgcta tccacgcttt cggtttattc gatctgctca ccgatttacc
    12181 ccacttacag acactcattc gccagagcgg attgttcggt tatagcctct atattctgtt
    12241 attcatcatt gccaccctct ttctgttact aggaagcata ctggtgatcg ctggaggaat
    12301 agtttttggc ccgctcttag ggacactact ctcattaatt gccgccacgc tggcctcctc
    12361 gtgctcattc ctgctggcgc ggtggctggg acgtgattta ctgctgaaat acgtgggcca
    12421 tagccatacc ttccaggcca ttgaaaaagg cattgcgcgt aacggtattg attttcttat
    12481 tctgacccgc ttaatcccgt tgtttcctta caatattcaa aattacgctt acggattaac
    12541 caccatcgcc ttctggcctt atacccttat ttcggcactc acgaccctgc ccggtattgt
    12601 tatttatacc gtgatggcaa gcgatctcgc caatgaaggc attacgctg
//
LOCUS       DAJVUY010000124        12603 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.124, whole genome shotgun sequence.
ACCESSION   DAJVUY010000124 DAJVUY010000000
VERSION     DAJVUY010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12603
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.124"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            245..1342
                     /gene="mltA"
                     /locus_tag="OQQ72_003076"
     CDS             245..1342
                     /gene="mltA"
                     /locus_tag="OQQ72_003076"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HCS2012724.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            1419..2225
                     /gene="tcdA"
                     /locus_tag="OQQ72_003077"
     CDS             1419..2225
                     /gene="tcdA"
                     /locus_tag="OQQ72_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HCS2012725.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(2276..2719)
                     /gene="csdE"
                     /locus_tag="OQQ72_003078"
     CDS             complement(2276..2719)
                     /gene="csdE"
                     /locus_tag="OQQ72_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HCS2012726.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVLGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(2719..3924)
                     /gene="csdA"
                     /locus_tag="OQQ72_003079"
     CDS             complement(2719..3924)
                     /gene="csdA"
                     /locus_tag="OQQ72_003079"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCS2012727.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            4116..4343
                     /locus_tag="OQQ72_003080"
     CDS             4116..4343
                     /locus_tag="OQQ72_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS2012728.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            4694..5611
                     /gene="gcvA"
                     /locus_tag="OQQ72_003081"
     CDS             4694..5611
                     /gene="gcvA"
                     /locus_tag="OQQ72_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     regulator GcvA"
                     /protein_id="HCS2012729.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            5630..6025
                     /locus_tag="OQQ72_003082"
     CDS             5630..6025
                     /locus_tag="OQQ72_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HCS2012730.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            6018..7118
                     /gene="rlmM"
                     /locus_tag="OQQ72_003083"
     CDS             6018..7118
                     /gene="rlmM"
                     /locus_tag="OQQ72_003083"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HCS2012731.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENSGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(7162..7893)
                     /gene="fucR"
                     /locus_tag="OQQ72_003084"
     CDS             complement(7162..7893)
                     /gene="fucR"
                     /locus_tag="OQQ72_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HCS2012732.1"
                     /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT
                     QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS
                     STCWYLARQLPDINIQVFTNSHPICYELGKRERIQLISSGGTLERKYGCYVNPSLISQ
                     LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA
                     RIGHLDEVTHIISDERQVATSLVTA"
     gene            complement(7951..8373)
                     /gene="fucU"
                     /locus_tag="OQQ72_003085"
     CDS             complement(7951..8373)
                     /gene="fucU"
                     /locus_tag="OQQ72_003085"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HCS2012733.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(8375..9793)
                     /gene="fucK"
                     /locus_tag="OQQ72_003086"
     CDS             complement(8375..9793)
                     /gene="fucK"
                     /locus_tag="OQQ72_003086"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HCS2012734.1"
                     /translation="MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENN
                     TWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISW
                     KCPRTAAVMDNIEQLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERTHAWFFI
                     SSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIG
                     TLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGADQNEPVLSSGTWEILMVRSAQVDT
                     SLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAP
                     SADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKA
                     SELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEAR
                     AQIHYQYRYFYPQTEPEFIEEV"
     gene            complement(9790..11535)
                     /gene="fucI"
                     /locus_tag="OQQ72_003087"
     CDS             complement(9790..11535)
                     /gene="fucI"
                     /locus_tag="OQQ72_003087"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HCS2012735.1"
                     /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK
                     LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT
                     RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL
                     RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID
                     QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG
                     NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV
                     ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN
                     SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF
                     LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL
                     TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA
                     WAAHGMDIEVLQERL"
     gene            complement(11568..>12603)
                     /gene="fucP"
                     /locus_tag="OQQ72_003088"
     CDS             complement(11568..>12603)
                     /gene="fucP"
                     /locus_tag="OQQ72_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HCS2012736.1"
                     /translation="ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAA
                     NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ
                     LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRL
                     ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR
                     FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFS
                     LGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF
                     ARFRSQTATN"
BASE COUNT         3017 a         3157 c         3337 g         3092 t
ORIGIN      
        1 tgagcccgac gagctaccag gctgctccac cccgcgtccg tggatgcgca ctatactccg
       61 ctcgcgtttt catgcaacct tttttttacc ccgatcacgg atttagcatg attttgaaca
      121 aaaacaaacc actaaagcct attttttgtg caaaatttgc gtcagggaga ggctgctcat
      181 ttcattaaac gcggcggttt gttatcttcg ttgcgcctta ttttttaacc tgaagaagag
      241 aacaatgaaa ggacgttggg taaagtacct tcttatgggc acggttgtgg caatgcttgc
      301 cgcctgctct tccaaatcaa ccgatcgcgg acagcaatat aaagacggga aatttaccca
      361 gcctttctct ctggtgaacc agccagatgc cgttggcgcg ccgattaacg ccggtgattt
      421 tgccgagcaa attaaccata tccgtaattc gtcaccgcgt ctgtatggca accagagtaa
      481 tgtttataac gcggtgcaag agtggctgcg cgcaggcggt gatacccgca atatgcgcca
      541 gttcggcatt gatgcctggc agatggaagg tgccgacaac tatggtaacg tgcagtttac
      601 aggctattac acgccggtaa ttcaggcgcg ccatacccgc cagggcgagt tccagtatcc
      661 tatttaccgt atgccgccaa aacgtggtcg tctgccgtct cgtgcggaga tctacgcggg
      721 ggcattgggc gataaataca tcctcgctta cagcaactct ctgatggata acttcattat
      781 ggatgtgcag ggtagtgggt atatcgactt tggtgatggc agtccgctta actttttcag
      841 ctatgcaggg aaaaacggtc atgcctatcg cagcattggt aaggtgctga tcgaccgtgg
      901 cgaagtgaaa aaagaagata tgtcgatgca ggcgattcgt cattggggcg aaacacacag
      961 tgaagccgag gttcgcgagc tgctggaaca gaacccgtct ttcgtcttct ttaaaccgca
     1021 atcttttgca ccggtgaaag gggcaagtgc ggtgccgctg gttggccgtg cttctgttgc
     1081 ctccgatcgt tcaattattc cgccaggtac taccttgctg gcagaagtgc cgctgctgga
     1141 taataacggc aaatttaacg gtcagtacga attgcgtctg atggtggcgc tggatgtcgg
     1201 tggcgcaatc aaaggccaac acttcgatat ctatcaaggg atcgggccgg aagccggaca
     1261 tcgcgcaggt tggtacaacc actatggacg tgtctgggtg ctgaaaaccg ccccgggcgc
     1321 aggtaacgtc tttagcggct gatgtgttat tctgtatacc gtttttacgg atacgacagg
     1381 gtgagggata acctcaccct ttttaattct gaggtgctat gtctgtggta attagtgatg
     1441 catggcgtca gcgttttggt ggcacagcgc gtctgtatgg tgaaaaagcg ttgcaactgt
     1501 ttgctgacgc gcatatttgt gtggttggta tcggtggtgt cggttcctgg gcggcggaag
     1561 cgctggcgcg cacggggatt ggcgcaatca cgcttatcga tatggatgat gtgtgcgtca
     1621 ccaataccaa tcggcaaatt cacgctctgc gcgataacgt cgggctggca aaagcggaag
     1681 tcatggcgga gcgcattcgc cagattaacc cggagtgccg tgtaacggtg gtggatgatt
     1741 tcgtgacgcc ggataacgta gcgcaatata tgagtgccgg ttattcgtac gtgattgatg
     1801 ccattgatag tgtacgaccc aaagcggcgc tgattgctta ttgtcggcgc aataaaatcc
     1861 cgctggtcac gaccggtggc gcgggtgggc agattgaccc gacgcagatt caggttaccg
     1921 atctggcgaa aacgattcag gacccgctgg cggcgaagtt gcgcgagcgc ctgaaaagcg
     1981 attttggcgt agtgaaaaac agtataggta agctcggcgt ggattgcgtg ttttctactg
     2041 aagcgctggt gtacccgcag tcagacggta cggtgtgtgc gatgaaagcc acggcagaag
     2101 ggccgaagcg gatggattgt gcatctggat ttggcgcggc aacgatggtg accgccacct
     2161 ttgggtttgt tgcggtttct catgcgctga agaagatgat ggcgaaagca gcgcgtcagg
     2221 gttaaacaat caggtcggat gcgacgcgaa cgtcttatcc gacctggttc tgtgcttaaa
     2281 cctgcttcgc cgcagcgata attgcctcgc ttaacgcatt caacccctgg ctgcgtgagg
     2341 cgctaagctg cccacgcaat cccagctcat caaacaatgc cagcggcgac tgtgcctgta
     2401 attcggcggc ggttttcccc tcaacggcag tcaacaacac cgccaacagg ccgagcacaa
     2461 tgcgcccttc gctgtcgcca aagaagtgca ttttaccgtt ttcagccacg gtatatccca
     2521 gccagacgcg gttttcgcat ccggcaatct ctttagcctg cgcttttaac tcgtctggca
     2581 aagccggaag ctgtttcccc aacatgatca actggcgata tttatcttcc cattgcgtca
     2641 acggtgcgaa ggtattgcgt aacgtttctg cggttacggt tgtgccgaac ggatgtccgg
     2701 cgaattgcgg gtttgtcatt aatccaccaa taattccagc gcgcggtcaa cggcattcac
     2761 cagcgcatcc acatcactct ttgtattata tggcgcaaaa gaggcgcgca gtgtgccggt
     2821 tacgcctaat tctgccagta gcggctgagc acaatgttgc ccggcccgca aggcaatacc
     2881 gtactccgcc agtagcgtca ccatatcgct gtgatgaacg ccagcaaaat caaaggccag
     2941 caggctggaa tcctggcagc ggaatgaacg aaagcctgga cgtttcgcca gcgcatcttc
     3001 cgccagcgtt gctaagctat ggctccagtt ttcggcctgg ttgatatcgt aatctgccag
     3061 ccattccagc gccgcgctta atcctatgac accagccaca tttggcgttc ctgcttccag
     3121 tttccacggc gcagattgag tcgtgaagcc gtcaaaactc acttcgtgaa tcattttgcc
     3181 gccacccagc cagggcgaca tcgcttccag cagttctgat ttgccataca gcacgccgat
     3241 acccgtcggg ccatacagtt tgtgaccaga gaaagcatag aaatcgatat ccagttgctg
     3301 aacatccgcg gggaaatgca ccgccccctg agcaccatca accatcacca ccatccctgc
     3361 tgaatgagca aaggtaatcg ctcgcgccag atccgggcaa ccgccagtaa cgttcgacat
     3421 ctgactcaac gccagaatcc gactacgggg agtaatcagt tctggcaaca aatcgacatc
     3481 cggcagtcgc tgcgcattaa gcggcaattt caccactttg gctccagttt gttgggcgac
     3541 catcagccag gggacgaggt tggcgtggtg ttctgccacg ctgacaataa tctcatcgcc
     3601 cggttgcaga cgcggacgcg catagcattg tgccaccatg ttgatggatt cagtggtgcc
     3661 gcgcgtccag acgatagttt tatcatccgg tgcattcagt aattgcgcca ctttctctcg
     3721 tgcagcttca taacgcgcgg tcaggcgttg ggcttcggca aactggctgc gatggacgtt
     3781 tccggcgctc aggctgtaaa actgtcgagt ggcttcaacc acggcttcag gtttaagcgc
     3841 ggtcgcggcg ctgtcgagat agacgcccgc atcctgtagt gcgggaaact gggcgcgaaa
     3901 ctgcgcggga ttaaaaacgt tcatggtact cctcggcttg atgcaccgat cgtgacgcaa
     3961 aattcacttt gatacaagga gagtgctaac catcagaatt atctggatat cctggcgaag
     4021 ccgcgtaagt aacatatgct gaatagtgtt aggcgttaat tttagcctgt taatcaatac
     4081 tattaagatt tattaatcgc tttaaggaga agatgatgaa aaagactgcc gcaattattt
     4141 ctgcctgtat gctgactttt gccctgagcg cctgttccgg ttcgaactat gtgatgcaca
     4201 ccaatgacgg acgtaccatc gtctctgacg gcaaaccaca gactgataac gataccggta
     4261 tgatttcgta taaagacgct aatggcaaca aacagcagat caaccgtact gacgtgaaag
     4321 agatggtcga actggatcag taattcgcga tcgcaaggta aaaaaaagca ccgcaattag
     4381 gcggtgctac attaatcact atggacagac agggtaaatg tacaggaagt gaaaaaaggt
     4441 agctttgcta ccatggtctg aatcgcagac caattgcaaa cacaacaaca caacatcaca
     4501 accgtaagcc aaaagttcac cagaacacgc attccgataa aacttttcgt tccggctcag
     4561 gaagtgccgc cactataggt atttgctggt agaagctcaa cggacaattt ataatggctc
     4621 agattaaaaa aactaatagg ttacatagtg tgatctaatt gttaaattca tttaacatca
     4681 aagtttaata gccatgtcta aacgattacc accgctaaat gccttacgag tttttgatgc
     4741 cgcagcacgc catttaagtt tcactcgcgc agcagaagag ctttttgtga cccaggccgc
     4801 agtaagtcat caaatcaagt ctcttgagga ttttttgggg ctaaaactgt tccgccgccg
     4861 taatcgttca ctcctgctga ccgaggaagg gcaaagctat ttcctcgata tcaaagagat
     4921 attttcgcaa ttaaccgaag cgacgcgtaa actccaggcc cgtagcgcca agggggcgtt
     4981 gacggtcagt ttactcccca gtttcgccat tcattggttg gttccgcgac tttccagctt
     5041 taattcagct tatccgggaa ttgacgttcg aatccaggcg gttgatcgtc aggaagataa
     5101 gctggcggat gatgttgatg tggcgatatt ttatggtcgg ggcaactggc cggggctacg
     5161 ggtggaaaaa ctgtacgccg aatatttatt gccggtgtgt tcgccgctac tgctgactgg
     5221 cgaaaaaccc ttgaagacac cggaagatct ggctaaacat acgttattac atgatgcttc
     5281 gcgccgtgac tggcagacat atacccgaca gttggggtta aatcatatca acgttcagca
     5341 agggccaatt tttagccata gcgccatggt gctgcaagcg gctatccacg ggcagggagt
     5401 ggcgctggca aataacgtga tggcgcaatc tgaaatcgag gccggacgtc ttgtttgccc
     5461 gtttaatgat gttctggtca gtaaaaacgc tttttatctg gtttgtcatg acagccaggc
     5521 agaactgggt aaaatagccg cctttcgcca atggatcctg gcgaaagccg ctgctgaaca
     5581 agaaaaattc cgctttcgtt atgaacaata atttacgtag ggtacgacca tgaccagccg
     5641 ttttatgctg attttcgccg ccattagcgg cttcattttt gtggctctgg gcgcttttgg
     5701 cgcgcatgtg ttaagtaaaa ccatgggggc cgttgagatg ggctggatcc agaccggcct
     5761 cgaataccag gcgtttcata cgctggcgat cttaggtctg gcggtggcaa tgcagcgtcg
     5821 catcagtatc tggttttact ggagtagcgt tttcctcgcg ttaggcacgg tgttgttcag
     5881 cggcagcctt tattgcctgg cgctgtccca tctgcgtttg tgggcgtttg tcactccggt
     5941 tggcggcgtg agcttcctcg cgggctgggc gttaatgtta gttggtgcta tccgtttaaa
     6001 gcgcaagggc gtaagtcatg aataaggttg tattgctgtg ccgtccgggc tttgaaaaag
     6061 agtgcgccgc agaaattacc gataaagccg gccagcggga aattttcggt tttgcccgcg
     6121 tgaaagagaa ttcgggttat gtcatttatg aatgttatca acctgatgat ggcgataagt
     6181 taatccgtga gctgccgttc agttcattaa tttttgcccg ccagtggttt gtggtggggg
     6241 aactcctgca gcatttgccg ccagaagatc gtattacccc cattgtcggc atgttacagg
     6301 gcgtagtaga gaagggcggt gaactgcgtg ttgaagttgc cgataccaac gaaagcaaag
     6361 agttgctgaa attctgccgt aaatttactg ttccgctacg cgctgccttg cgcgatgccg
     6421 gggtgctggc gaactatgaa acgccgaagc gtccggttgt gcatgtattc tttattgcac
     6481 caggctgctg ctataccggt tactcataca gcaacaataa ttcgccgttc tatatgggca
     6541 ttccgcgcct gaaatttccg gcagaggcgc cgagtcgttc cacgctcaaa ctggaagagg
     6601 catttcatgt gtttattcct gcggatgagt gggatgaacg cctggcgaac gggatgtggg
     6661 cggtggattt aggcgcttgc cctggcggct ggacctacca actggtgaag cgcaacatgt
     6721 gggtttattc cgtcgacaac ggcccgatgg cgcaaagtct gatggatacc gggcaggtga
     6781 cgtggctgcg ggaagacggt ttcaaattcc gtccgacacg cagcaatatc tcctggatgg
     6841 tatgcgatat ggttgaaaaa ccggctaaag ttgcggcatt gatggcgcag tggctggtta
     6901 atggctggtg ccgtgaaacc attttcaatc tcaaactgcc gatgaaaaaa cgctacgaag
     6961 aagtatcaca caatctggcg tatattcagg cacagcttga tgaacatggc ataaatgctc
     7021 agattcaggc gcggcagttg tatcacgatc gcgaagaagt gacggtgcac gtccgccgca
     7081 tctgggctgc ggtgggtggt cgtcgcgacg agcgataaca ggcaaggccg gggcgtcgtc
     7141 ttcggcctgc taccctttcc gtcaggctgt taccaaagaa gttgcaacct ggcgctcatc
     7201 agaaataatg tgcgttacct catccagatg cccgatgcgg gcttcccctg aacgattaaa
     7261 tttactttta tcaatcaata acaacgattg cgcggcacgt tttaatagca tcgatttgta
     7321 atcagcgttg atcgcattgg agtcccacag tgcgccgctg ctatcgatcc cttcacaaga
     7381 aaaaataaac agatcgattt ccagcgattt aagttgggaa atcagcgagg gattgacgta
     7441 acagccatat ttgcgctcaa gtgtgccgcc ggaactgatc agttgaatgc gttcgcgttt
     7501 accgagttca tagcaaatcg gatggctatt ggtgaagacc tgaatgttga tgtcaggcaa
     7561 ctggcgtgcc agataccagc aagttgaact ggcgtctaag gctatcacca tcccttcttc
     7621 aatccacgcg agcgcctcgc gcgcgatatc tgctttatgc gcataatggc ttttcagcct
     7681 gatgtgaaag ggatcgccac tgtcttgatt ttgacggtgg atatatttag cgcgtccatg
     7741 attgcgcaga attttaccct gcgtctgtaa ttcattgaga tcgcgacgaa tggtttcttt
     7801 actgaccttt agctgttcag agagagcttc cgtggtcagg ctggtatggt tcagcagcag
     7861 gtcgactatc gcttgctggc gtgccgcttt catatttttc accccatcat tcgataaccg
     7921 cccgcgtcat gcgggcgtac cggtatgaga ttacggtgtt accccttttt ttaaaagaat
     7981 attcccgtac ttcgctcgtt cgcctgtgat aacgatcgca aaggcttttt gcgcccgttc
     8041 ataaaacgca aaacgattga tgcggatgat gtcaggacac ggggcttgta gtgaaagcgc
     8101 attacggtaa cgtcgttcta cttcaggatc gagagtgtca ccttctaccg ccgccatcat
     8161 caccagcggc ggtgcataac tgtccagttc aaataacggg ataatcgcct ggagcaagtc
     8221 gctcaccaac aggccatcag cgcggatcac ctgcggtccc atcgaatggg cgggaaagtg
     8281 agcatcggaa aaaataattt catctccatg tcccatctct gccagcactt tcaatagttc
     8341 gggagaaatt aacggcgaaa ttgttttcag catttcacac ttcctctata aattcaggtt
     8401 cagtttgcgg gtagaaataa cggtactgat aatgaatctg tgcgcgggct tcttcagggc
     8461 tgttaaattc ccctacgcca taccaaccga acagcgcagc tcctgcgacg gtcgtttcgg
     8521 cgtcgtcgag aacttttacc ggaatatcaa gcatattggc tttaatctga ttccacaatg
     8581 tgttgcgact tcctccaccg actaacaata attcagaggc cttaaagtgc ccgatttttt
     8641 ccagcatctg tagattgcgc tgtaattgcg cagttaaccc ttccagcgcc gcgcgataga
     8701 aatgcccccg cgtggtatta agcgtcactc cttgccagcc agcgttctga cacgacaata
     8761 aatcacactg catttttacg ccatccgcgc taggcgcgat aagacgagct tcttcaatca
     8821 acatttgcca gggtgtttca gccgtccaga acagttttct cacccattcc agcacgccgg
     8881 atgccagcca ttgcatacct gggttataca accctgcctg gctatccagt tcgcaggtgg
     8941 aaccggcgta ctgacttaac agcgaagtat caacctgggc gctacggacc attaaaattt
     9001 cccatgtacc ggaagagagc acgggttcat tttggtcggc accagcgcca aaaagggcga
     9061 actgggtatc gtgacctgcg gaaatcaccg gtatgccaac gggtaagccg agcattgctg
     9121 cggcgctgtt ctgtagcgta ccaatctgtt cacccgcttc caccagacga gggaagagtc
     9181 ggcgtggaat accagtggct tgtaaaattt gcggactgaa atcgcgttgc tggatatcca
     9241 gcatctggct ggttccggcc atcgtgatat cagtagtgaa ttcgccggtt aaacggtggt
     9301 taatcagcga cgaaataaag aaccaggcgt gcgtgcgttc cagcagttgt ggatgatttt
     9361 ctttcaacca caccaactta tataacgtat tgaaactaaa ggctccgacg ccagaaatag
     9421 cctgcaaccg ctgtgcggag atcaactgtt caatattgtc cataaccgct gctgttcgcg
     9481 gacatttcca gctaatgatc ggatagagca gattgccttg cttatctacc agagcgccat
     9541 ccacaccaaa ggtggtgacg gcgataccgc ggatgtggca ttcagtcagt tcactattga
     9601 tttgccgaca gcaatcagca aagcgttgca aaatggcgtc taaagaccac tggtgccagg
     9661 tgttgttttc catcgcgata tcgctggcat taggcgttga ggcgcgggca acaatttttc
     9721 cctgccgatt aaccgcgatg gccctgacat tggtcgcgcc acagtcgagt accaggataa
     9781 cttcttgttt cataatcgct cctgcaatac ttcaatatcc atgccgtgcg cagcccaggc
     9841 agaaggacga tacactttgg tctcttcaac gttgtgcata cataccggga tacgcagcat
     9901 ggaggcgaga gtgataaagt cagcgccaac gtggccgatg gtcagaaccc catggttagc
     9961 gccccagttc gccattaccg agtacacatc cgtaaacggc cctttaccgg tgaggcgcgg
    10021 tgcaaaccag gtggttggcc aggttgagtt ggtgcgtttg ttgaggatgt catgcacatc
    10081 cttcggcaat tccacgctcc agccttccgc gatttgcagt accggtccca ggcctttgat
    10141 gatgttgaca cgagtcatgg tgaacgggac gccgccttcg gtaaggaagc gggaagagta
    10201 accgccgcca cggaagtatt cgtggatcgc cgggcaccat tcggtagcgg cgaggcaagc
    10261 gtcagcctct tgctgagaga tttcccagtg cggcttcatc gtcgggttac cttcgctgtc
    10321 gcgttgttta caggaaccgt ccagcgcagc agaacctgag ttgatcaaat ggatgatgcc
    10381 gtgttctgcc agtccatcga gtttatgccc cgttacacgc tcaattgctt ctggtgacca
    10441 gtaggtacgc acatcggcaa atacctgagc ggtgccggtg agctggtgac ccattagcat
    10501 tgccacgccg ttaagactgt cgttttcggt cgccacgaca aagggttcgc gcacgccatt
    10561 ccagtcaaat gaactgttga ggatcgcttc ggcggtgtca ccattgggat attgatcggt
    10621 ccagtgacgt tgcccctgga agcccgcagc gatggcgttg tagccaagtg attcttccac
    10681 gcgaccaata tcggccagtt tgctgttgcc ttgcatcatg tcgcggatac acatcgccat
    10741 cagtaaactt tcgcgcagaa ctgcgcggct ttgctcggca ttgcgttgat actgtttgtt
    10801 attttcatct tcgccatagc ggaagttttt atcagcccag gccagtgcca tttccagttc
    10861 ggcttcgtcg taaatcttct gatcgatacg gcgacgcagt tcggtcatat ccaccgcctg
    10921 gactttcatt cccagccagg attcaaagaa gttgtgatca acgatggaac cggcgatacc
    10981 catcgaaacg ccgcccagcg acagatagct tttacctttc atgctggcga cggccaaacc
    11041 ggcgcgggca aagcgcagca gtttttcttc aacatcggca ggaatcgatg tgtcatcggc
    11101 atcctgaacg tcatgaccgt aaatggagaa tgccgggatg cctttctggc tgtgagctgc
    11161 cagagccgct gccaggtaaa cagcgccggg acgttcagtg ccgttaaagc cccaaatggc
    11221 tttcgggcgg gttggatcca tgtcgatggt ttcactgcca tagcaccagc aaggcgttac
    11281 cgtaatggtg aggcctacat tctggctgct gaatttttct tcgcaagcag cggcttcagc
    11341 catacccgcg atacaggtat cggaaatgac acactcgacg gcagctccgc aggcatggcg
    11401 cagtttctcg gtcagcagtg cggccgtagc tttcgccata ttcattgttt gttcttcaag
    11461 cgactcacga acacccatgc gacgaccgtc aataaccggg cggataccaa ttttcggtaa
    11521 gctgattttt ttcattacag attcctcact ttattcggaa aatatgttca gttagttgcc
    11581 gtttgagagc ggaaacgggc aaagataaag atgaccgcga agcagagtgc ggggatcagt
    11641 tcagcagtgg ggatgttgcc cgccgcgtca ctgacaaaac ccatgaccgg agtgacaata
    11701 ccgccgccaa taatggtcat aacgatgaag gacgaaccgt atttggtgtc ctggccgaga
    11761 ttcttaatgc ccagcgagaa gattgttggg tactgaatcg acataaaggc gctgcataaa
    11821 gtcagggcta ttaagcccac atgaccgcca gcgaaggctg agatcaggca cagtgccata
    11881 gcgattaatg cgtaggcggc caggactttg tgtggtgcga agcgactgat gagccaggta
    11941 ccggtgaaac gaccaataaa gaagcacacc atggttccgg ttaaatagtt agcggcaaag
    12001 cctgcagtca tacctggaat ttcttctaca gcgtagcgaa tcaaatagct ccagcaggcc
    12061 gtttgtgcgc caacgtagca gaattgcgct aatactgccc agcgccagtg gcgaatacgc
    12121 gccaggcgag aaagcgatgc ggagaacgat ccttgtttgg cgtcactgtg attatcactc
    12181 tgcaatgccg ggaatttcgt cagcatgatc agcagggcga ccagtaacac gatagccacg
    12241 atgatcatat aaggtgtctg taccgataat accaggctgt gtttatacgc actcaattgc
    12301 tctggagaca ttttatcgag aacgtcttgc gattgatgtg gcacgttaga caaaataaga
    12361 ctttgcccaa agacaaccgc gataattgcg ccaaacgagt taaatgtttg cgcaagattt
    12421 aagcggaagt gaccactgct ttccggccct aataccgtaa caaaagggtt tgcggcagtt
    12481 tccagacaac ctaatccggc tgcaataata aataggccaa ctaaaaataa ggtgtagttc
    12541 attatttctg cagcgggcca gaataatgca gcgcccaggg catataaaaa taacccagta
    12601 ata
//
LOCUS       DAJVUY010000125        12392 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.125, whole genome shotgun sequence.
ACCESSION   DAJVUY010000125 DAJVUY010000000
VERSION     DAJVUY010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12392
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.125"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(28..816)
                     /gene="phoH"
                     /locus_tag="OQQ72_003089"
     CDS             complement(28..816)
                     /gene="phoH"
                     /locus_tag="OQQ72_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCS2012737.1"
                     /translation="MGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEA
                     IGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK
                     DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIG
                     KVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP
                     RGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS"
     gene            complement(1438..2709)
                     /gene="efeB"
                     /locus_tag="OQQ72_003090"
     CDS             complement(1438..2709)
                     /gene="efeB"
                     /locus_tag="OQQ72_003090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HCS2012738.1"
                     /translation="MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGT
                     LSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLT
                     QGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
                     TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHA
                     ARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQ
                     FRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLAN
                     PRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALE
                     EYVKPIGGGYFFSLPGVKDANDYLGSALLRV"
     gene            complement(2715..3842)
                     /gene="efeO"
                     /locus_tag="OQQ72_003091"
     CDS             complement(2715..3842)
                     /gene="efeO"
                     /locus_tag="OQQ72_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HCS2012739.1"
                     /translation="MTINFCRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM
                     TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT
                     CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
                     IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR
                     LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI
                     SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY
                     RTKDGFETYDKLTDADRNALKGPITAQAEDLAQLRGVLGLD"
     gene            complement(3900..4728)
                     /locus_tag="OQQ72_003092"
                     /pseudo
     CDS             complement(3900..4728)
                     /locus_tag="OQQ72_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309290.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
     gene            4764..5066
                     /locus_tag="OQQ72_003093"
     CDS             4764..5066
                     /locus_tag="OQQ72_003093"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012740.1"
                     /translation="MQRKVNRSDSDYHYGKEKYKRNVYKMMLECKQREVMPGDINDYS
                     RVERWDCLQRTMCSCRMPRKRHIQPTKLSRLNASELPCKTDKRVYQAISSIRDYQI"
     gene            complement(5397..6905)
                     /gene="putP"
                     /locus_tag="OQQ72_003094"
     CDS             complement(5397..6905)
                     /gene="putP"
                     /locus_tag="OQQ72_003094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HCS2012741.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            complement(7064..7273)
                     /locus_tag="OQQ72_003095"
     CDS             complement(7064..7273)
                     /locus_tag="OQQ72_003095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012742.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            7328..11290
                     /gene="putA"
                     /locus_tag="OQQ72_003096"
     CDS             7328..11290
                     /gene="putA"
                     /locus_tag="OQQ72_003096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS2012743.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQLVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNCNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTYETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            complement(11330..11968)
                     /gene="rutR"
                     /locus_tag="OQQ72_003097"
     CDS             complement(11330..11968)
                     /gene="rutR"
                     /locus_tag="OQQ72_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HCS2012744.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFIIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            12256..>12392
                     /locus_tag="OQQ72_003098"
     CDS             12256..>12392
                     /locus_tag="OQQ72_003098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HCS2012745.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
BASE COUNT         2993 a         3433 c         3129 g         2837 t
ORIGIN      
        1 cgcccgggct ctgcaccgat aacacactta actgtatgca tgcagcgtac gttggcaaag
       61 tgccgaacgt acgcaatcct cttttccgaa ccggacgatc ccaaccattt catcttcttc
      121 gaaacgttcc agcgcgtcac ttaatccgga gcacacgccg cgaggcaaat cgcattgcgt
      181 gatatcaccg ttgacgataa ccgtcacgtt ctccccgagg cgggttaaaa acattttcat
      241 ttgcgcggca gtcacattct gcgcctcgtc aagaatgacg actgcatttt caaaggtacg
      301 tccacgcata taggcgaacg gcgcgatttc caccttccct atttccggtc gcaggcagta
      361 ctgcataaag gaagccccta agcgccggac cagcacgtcg tagaccgggc gaaaataggg
      421 agcaaacttt tctgcgatat caccaggtaa gaagccaaga tcttcatcgg cttgcagaac
      481 tggacgggtg acgataatcc tgtcgacatc cttatgtatc agggcctctg ccgcttttgc
      541 tgcgctgatc caggtttttc cgcacccggc ttcgcccgtg gcgaatatca gctgcttact
      601 ctcaatagcc ttcagatagt gcaattgcgc ttcatttcgc gcgaggatgg gcgaggtatc
      661 gcgactgtcg cgggccatac caatggcttc tacgccgctc atctgcacaa gcgaggtgac
      721 cgattcttct tcacgctgct tatggctgcg cgaatcccgt ctcagcacac gttttgcctc
      781 gcgacgagct ttgatcactg ctttttgtct tcccatggag agcaccttga gttgtttgta
      841 ttcatcacac gcgccgttgg cagcgcgatt atgcgcacga acatcagagg gttggcttcc
      901 ttgtaagcca tagtttgctt ttggataaaa tgccgaaaaa cggctacgcg caccgtttac
      961 ggcgtcggta acacatgaaa agaaaggatg aggttgaaaa tgcaaagtga cgagatgact
     1021 accggaggag aaaactccgc gagtggtggc gcgttgatta tctaaaacat gtccagtaca
     1081 ggacgttacc atccgcgatc tccatagtga ctgactatca ctgccgggaa cttccgctgc
     1141 tacttaataa gtacaacaga tctcgcattt tattgcaaca atatatttac ttatatttaa
     1201 ctataaaaca ctatttcagt gacattagtt tctactggaa agatgacaga gtgatgacag
     1261 tgatgaaaaa agctgtgtgc tttcagcagg atttgcatca ggcatcagtg cacgatcgcc
     1321 ggatgcggcg tgaacgcctt atccagccta ccaaacccgc actgattgta ggcatgataa
     1381 gacgcgcaag cgtcgcatca ggcatctgcg cacaaatgcc ttatccgcct aaaaacatta
     1441 aacccgcaat aacgcgcttc cgagataatc gttcgcgtcc ttcactcccg gcagcgaaaa
     1501 aaaataaccg ccgccgatag gtttaacgta ttcctccagc gcttcgccat tgagcctttt
     1561 ttgtactgtc aggaagcctt tttccagatc gtgttggtag cagacaaaca gcaaccccat
     1621 atccagttgt ccggagttgg tgacccccaa cgaataactg tagccgcgac gcagcatcag
     1681 gctggactca ctctccgccg tgcggggatt cgccagccgg atatggctgt ccagcgcgat
     1741 caccttccct tccgggtcgc tggcgtaatc aggcacatca tgctcatgct gcattcccag
     1801 cggcgcaccg gtttgcttat cacggccaaa aatcgtctgc tgttctttca gcggcgttct
     1861 gtcccaaaat tccactcgaa actgaatcaa gcgtactgcc tgatagctgc caccgattgt
     1921 ccacgcaggc tcctgctgat ctgccgttac ccacaccact ttttgcatca acttatcatt
     1981 ctggctatcg ggattggcag tgccgtcttt aaagcccagc aaattaatcg gcgtctcttt
     2041 gcctttacta cgcgctgcgt gatcggaaat aaacccttcc cgcttccagc gcacgctgag
     2101 caaatccggc gtgtgtttga tgatatcgcg cagcgcatgg atcaccgtgt cctgggtgtt
     2161 ggcgcaaatt tgtagcaaca catcaccatg gcataacgcc gcatccagcg agtcgttggg
     2221 gaaacgcgtc atcttctgca actttttcgg catctgtggc gcaaggccaa accgctcatc
     2281 aaacaatgag tgacccaccg ataacgtgat ggtgagatta tcgggcgcaa tgtagccgcc
     2341 aagaatgccg gaatcgagtg gtggcaggcg cggatttggc gtttctggtg ccgctccgcc
     2401 ctgagtcaga aaagcaaaac gctgagtcaa caagcgaaac aaccgttcaa gatcggcttt
     2461 atcgctggca agcacatcaa acgccaccag catcattgcg gcctgttgtg gcgtcaggat
     2521 ccctgcctga tgctcaccat aaaacggctg tttctcattg cgtgcatccg gtgaaagcgt
     2581 acccggcgca ctttgcgttt tttgtgcatg agcgaccgga caacttcccg ccagcgccag
     2641 cgcacctatc actttcagta aacgtcggcg tgacggttca ttcacgccgt tttcatcttt
     2701 atactgcata acgcttaatc cagtcccagc acaccgcgaa gttgcgccag atcttccgcc
     2761 tgcgcagtaa tcggtccttt cagtgcattc cggtcggcat cggtcaattt gtcgtaggtt
     2821 tcaaaaccgt ctttagtacg gtatttcgcc agaatggtat cgaccttttt aaagttggca
     2881 tcgacttttg ccagcagttc cgggttggct ttttgcagtt gtggacgcag caaatcgaca
     2941 attttctgcg agccttcaac gttagcctgg aaatcccaca gatcggtgtg gctgtagcga
     3001 tcttcttcac cgctaatttt gctggctgcc acttcctcaa tcagtccggc tgcgccgccg
     3061 accacttttg aaggtgggaa agccagttca ctgatgcgtt tttgcaaatc gaccacatct
     3121 gtataaagct gctcagcgta ctgatccatc cctttggtgg tgttgtcgcc aaacaatgct
     3181 ttttccagac ggtggaaacc agtgaatttt gggtcggcgg ctttttgctc gtaatcatct
     3241 tcacgggcgt caatgctgcc atccagatcg gagaacagtt cagcaatcgg ttcaatgcgc
     3301 tcatagtgct ggcgcgtcgg cgcatacagt gctttcgctt tttcgatatc gccagcttta
     3361 atcgcgtcgg taaaggcttt ggtgtcggtc accagctgcg tggtttccgc catgacatac
     3421 gctttatatg cagtaattgc accaccaaga cttaacagcg catcactttg cgccgcatcc
     3481 gccgttgcct cacctttgac gatcaacttc cctttcgggt tagtcagcag accgcaggtc
     3541 atatcgtatt cgccaggctg taaattcgcc gtcattttct ggctaaaacc aggggcgata
     3601 ttttcccgct cttccaccac catcacgcct ttgaggatct cccactccag cgccttctgg
     3661 ctatggttct gaataatgaa ctgtgttttc ccggcgttaa ccgtaatggt catcggttcg
     3721 cactgcttat ccgtcacggt cactttgacc tgcggcacat cagcggcgtt agccataaaa
     3781 gcagaagaaa acagcgcagc cacgctcaac tgcaatgcgt tacggcagaa gttaatggtc
     3841 atgacgagac tatcccttta aagtatgttg taactaagca agagtttgcg tcgtatttgt
     3901 tacgcggagc gagacgctgt cgcccctgcg cgtggtggca gagcaaatgc caccagcgcc
     3961 gggatgagat aaataaacca gacggcgact tcgctgacgc tcggcgcttc ctgatagcca
     4021 aaaatccctt ccatcagcgt gccaaacagc gagtgagttg agagcaccgc actcatatcg
     4081 aaggcgattt cctgaaagtg gttccacaat ccggcttcat gaaatgcgcg aatggcacca
     4141 gctgccagcc ctgcggcgac gaagagaata aacaggctgg tccatttaaa aaatgcacca
     4201 agattgaggc gaataccgcc ccagtagagc agaaagccga gcaccacggc tgtagcaaga
     4261 ccgagcattg cacccagcgg cggccagatc ccgacatctt gttgaaatgc cgccagcagg
     4321 aaaaagaccg actccagccc ttcccttgca acggcaaaaa agaccatcat caccagcgcc
     4381 cagccatgat gatttccacg ctacaatgca ctatcgactg cctgttccag ttgcacttac
     4441 gttgcgcgac actttgcgca tccagaaaac catccaggta aggatcacca cggcgatcac
     4501 cgccacgata ccttcaaaca gttcctgttc tttttgcgga aattcgccgg tggtttcgtt
     4561 aatgaagatc cccaggccca ggcacaacgc agcggcaagc aacacgccaa tccacatcac
     4621 accaatccat cggcctcgct gggtacgctt aagatagctg gcaatcaaac tgacaatcag
     4681 cgcggcttca agtccttcgc gcaacataat gagaaacgga acaaacatgc cacccaccct
     4741 taaacgtttt tctgagtcaa tctatgcaaa gaaaagtaaa tcgcagtgat agcgattatc
     4801 attacggtaa agaaaaatac aagcggaatg tttataaaat gatgttggaa tgtaaacaaa
     4861 gagaggtaat gccaggggat ataaacgatt attccagggt agaaagatgg gattgtttgc
     4921 aaagaaccat gtgttcttgc cggatgccgc gtaaacgcca tatccagccg acaaaactgt
     4981 ccagactcaa tgcatcagag cttccatgta aaactgataa gcgggtgtat caagcaattt
     5041 cgtccatccg cgattatcaa atctaacttt ttgcccggaa cataataaca gctcgggtgt
     5101 tggtggcgtc aaaatcgctg aagcgttccc cgaaggccgg gacagcccac atggatgtgg
     5161 gctgagggcg cgtcttacag gacgttacct cgcgcccgac ccggtagccg aaggggataa
     5221 gctgaaggta ccgcgcagcg gcgattttgt tcgccagagc ccgggggtgc acagggggcg
     5281 gcggcgattg gccgccccct gcgcgctccc tgcaccattc aatttatatg gcgaggcaca
     5341 ttaagggagc gcaacccgct gctgaagcca aacaaaaccg ccgcaggcta agtcccttag
     5401 ctttcctgca accgtgacgg cggagccgaa tgatagtgcg catcggcctc ggcaaagcgt
     5461 ttttgcatcg ccgctgacgg cgctttaccc agcaaactaa acactacaat cccgatactg
     5521 ccgaagatga agcccggaat aatttcgtac agtcccagcc agccgaactg cttccagacg
     5581 ataaccgtca gcgcaccgat gatcatcccc gccagtgcac cgttacgcgt catgcgtgac
     5641 cacatcaccg agaacagcac caccggacca aacgccgcgc caaagcctgc ccacgcgtag
     5701 ctcactaagc ccagcacgcg gttttccggg tttgccgcca gcgcaatcgc caccagcgcc
     5761 accaccagca ccatcacacg ccctacccac accagctctt tctggctggc atgtttacgc
     5821 agaaacgctt tgtataaatc ttcggtaatc gcactggagc acaccagcag ttggcaactt
     5881 aaggttgaca ttaccgccgc cagaattgcc gacagcagaa tcccggcaat ccacgggtta
     5941 aacagaattt gcgccagttc gataaacacg cgctcggcgt tctggtttac cgcgcctgct
     6001 accgccgggt gctcattaaa gtaagcaatc ccaaagaagc cgacagccac cgcccctgcc
     6061 aggcagagga tcatccaggt catactgata cgacgcgcat ggacaatgct gtggtgagaa
     6121 tccgccgcca taaaacgcgc cagaatgtgc ggctgcccga agtaacccag cccccaaccc
     6181 atcagtgaga taatggcaac aaagttcaga cctttgagca tatcaacgtt ttcgatgctc
     6241 ttttgtttga tcacttccag cgagtcacca aagccaccga cactgataat gacgataacc
     6301 ggtgtcagga tcagggcaaa aatcatcagg ctggcctgta cagtgtcagt ccagctcacc
     6361 gcgaggaaac cgccaataaa ggtgtaaagg atcgtcgccg cagctcccgc ccacagagcc
     6421 gtttcgtagc tcatgccaaa ggtactttca aacagacgcg cgcctgccac aatgcccgaa
     6481 gcgcaataaa tggtgaagaa cagcaaaata accagcgcgg agataatgcg caaaatgcgg
     6541 cttttatctt caaaacgccc ggtgaaataa tccggcaatg ttaaggcgtt attattgtat
     6601 tcggtatgca cacgcaaccg cccggccacc agcttccagt tgatccacgc gcctaatgtc
     6661 aggccaatgg cgatccagct ttcggaaatc ccggaaagaa aaaccgcgcc aggcaacccc
     6721 attaacagcc agccgctcat atccgacgca cccgccgata atgccgtcac aaatggccca
     6781 agactacgac cgcccagaat atagtcgtca aagtttttcg ttgatcgcca ggcgataaac
     6841 ccaatcaata tcatgccaaa gatatagaca caaaatgtca ccaacatcgg tgtgctaata
     6901 gccatctaaa gtctccaaaa aattattatc ggcaatgtcg aaacttgccg ttatatctgc
     6961 aaccggaacg gggtaacaga gtttattttt taccagggcg accgtatcct gccggaagcg
     7021 ctggttattc acaatcgatt taacacacca tttacattaa attttagtgc tcagcgacac
     7081 tatttttcat caggttgcac tctctcacat tttttgcggt tgcacctttc aaaaatgtta
     7141 actgccgcag agaaaaagtc tgagttattt ttttaatccc tgtcatatca atttctttta
     7201 ttaacatttc attcattttt aagcttgcta cgcaggtcac atttaacatg gttgcacaaa
     7261 gttgcaacat catggatatt tcacgataac gttaagttgc acctttcaga acaacaggag
     7321 taatggcatg ggaaccacca ccatgggggt taagctggac gacgcgacgc gtgagcgtat
     7381 taagtctgcc gcgacacgta tcgatcgcac gccacactgg ttaattaagc aggcgatttt
     7441 ttcttatctc gaacaactgg aaaacagcga tactctgcca gagctacctg cgctgctttc
     7501 tggtgctgcc aatgagagcg atgaagcacc gactccggca gaggaaccac accagccatt
     7561 cctcgacttt gccgagcaaa ttttgcccca gtcggtttcc cgcgccgcga tcaccgcggc
     7621 ctatcgtcgc ccggaaaccg aagcggtttc tatgctgctg gaacaagccc gcctgccgca
     7681 gctagttgct gaacaggcgc ataaactggc atatcaactg gccgataaac tgcgtaatca
     7741 aaaaaatgcc agtggtcgcg caggtatggt ccaagggtta ttgcaggagt tttcgctgtc
     7801 atcgcaggaa ggcgtggcgc tgatgtgtct ggcggaagcg ttgttgcgta ttcccgacaa
     7861 agccacccgc gacgcgttaa ttcgcgacaa aatcagcaac tgtaactggc agtcacacat
     7921 tggtcgtagc ccgtcactgt ttgttaatgc cgctacctgg gggctgttgt ttactggcaa
     7981 actggtttcc acccataacg aagccagcct ctcccgctcg ctgaaccgca ttatcggtaa
     8041 aagcggtgaa ccgctgatcc gcaaaggtgt ggatatggcg atgcgcctga tgggcgagca
     8101 gttcgtcacg ggtgaaacca tcgcggaagc gttagccaat gcccgcaagc tggaagagaa
     8161 aggtttccgt tactcttacg atatgctggg cgaagctgca ctgactgccg cagacgcaca
     8221 ggcgtatatg gtttcctatc agcaggcgat tcacgccatt ggtaaagcgt ctaacggtcg
     8281 tggcatctat gaaggtccgg gcatttcaat caagctgtcg gcgctgcatc cgcgctacag
     8341 ccgcgcccag tatgaccggg taatggaaga gctttacccg cgtctgaaat cactcaccct
     8401 gctggcgcgt cagtatgata ttggtattaa catcgatgcc gaagaggccg atcgtctgga
     8461 gatctccctc gatctgctgg aaaatctctg tttcgagccg gaactggcag gctggaacgg
     8521 catcggtttt gttattcagg cttatcaaaa acgctgcccg ttggtgatcg attacctggt
     8581 tgatctcgcc acccgcagcc gtcgccgtct gatgattcgc ctggtgaaag gcgcgtactg
     8641 ggatagtgaa atcaagcgtg cgcagatgga cggccttgaa ggctatccgg tttatacccg
     8701 caaggtgtat accgacgttt cttatctcgc ctgtgcgaaa aagctgctgg cggtgccgaa
     8761 tctaatctac ccgcagttcg cgacgcacaa cgcccatacg ctggcagcga tttatcaact
     8821 ggcaggtcag aactactatc cgggtcagta cgagttccag tgcctgcatg gtatgggcga
     8881 gccactgtac gagcaggtca cagggaaagt tgccgacggt aaacttaacc gaccgtgtcg
     8941 tatttatgcc ccggttggca catatgaaac gctgctggcg tatctggtgc gtcgcctgct
     9001 ggaaaacggt gctaacacct cgtttgttaa ccgtattgcc gacacctctt tgccactgga
     9061 tgaactggtc gccgatccgg tcactgctgt agaaaaactg gcgcaacagg aagggcaaac
     9121 tggattaccg catccgaaaa ttcccctgcc gcgcgatctt tacggtcacg ggcgcgacaa
     9181 ctcggcaggg ctggatctcg ctaacgaaca ccgtctggcc tcgctctcct ctgccctgct
     9241 caatagtgca ctgcaaaaat ggcaggcctt gccaatgctg gaacaaccgg tagcggcagg
     9301 tgagatgtcg cccgttatta accctgcgga accgaaagat attgtgggct ttgtgcgtga
     9361 agccacgccg cgtgaagtag aacaggcgct ggaaagtgcg gttaataacg cgccaatctg
     9421 gtttgccacg cctccggctg aacgcgcggc gattttgcat cgcgctgccg tgctaatgga
     9481 aagccagatg cagcaactga ttggtattct ggtgcgtgaa gccggaaaaa ccttcagtaa
     9541 cgctattgcc gaagtgcgcg aagcggtcga ttttctccac tactacgccg gacaggtgcg
     9601 ggatgatttc gctaacgaaa cccaccgtcc attagggcct gtggtgtgta tcagtccgtg
     9661 gaacttcccg ctggctattt tcaccgggca gatcgctgcc gcactggcgg caggtaacag
     9721 cgtgctggca aaaccggcag aacaaacgcc gctgattgcc gcgcaaggga tcgccatttt
     9781 gctggaagcg ggtgtacccc ctggcgtggt gcaattgctg ccaggtcagg gggaaaccgt
     9841 gggcgcgcaa ctgacgggtg atgatcgcgt gcgcggggtg atgtttaccg gttcaaccga
     9901 agtcgctacg ttactgcagt gcaatatcgc cagccgcctg gacgctcagg gtcgccctat
     9961 tccgctcatc gctgaaaccg gcggcatgaa cgcgatgatt gtcgattctt cagcactgac
    10021 cgaacaagtc gtcgtggatg tgctggcctc ggcgttcgac agtgcgggtc agcgttgttc
    10081 ggcactgcgc gtgctgtgcc tgcaagatga gattgccgac cacacgttga aaatgctgcg
    10141 cggtgcaatg gccgaatgcc ggatgggtaa tccgggtcgc ctgaccaccg atatcggtcc
    10201 ggtgattgat agcgaagcga aagccaatat tgagcgccat attcagacca tgcgtagcaa
    10261 aggccgtccg gtgttccagg cggtgcggga aaacagcgaa gatgcccgtg aatggcaaag
    10321 cggcaccttt gtcgccccga cgctgatcga actggatgac tttgccgaat tgcacaaaga
    10381 ggtctttggt ccggtgctgc atgtggtgcg ttacaaccgt aaccagctac cagagctgat
    10441 cgagcagatt aacgcttccg gctatggtct gacgcttggt gtccatacgc gtattgatga
    10501 aaccatcgcc caggtcactg gctcggccca tgttggtaac ctgtatgtta accgtaatat
    10561 ggtgggcgca gtggttggtg tgcagccgtt cggcggcgaa gggttgtccg gtaccgggcc
    10621 gaaagcaggc ggtccgctct atctctaccg tctgctggcg aatcgcccgg aaagtgcgct
    10681 ggcagtgacg ctcgcgcgtc aggatgcaga gtatccggtc gatgcacagt tgaaagccgc
    10741 attgactcag ccgctaaatg cactgcggga atgggcagca aatcgtccag aattgcaggc
    10801 gttatgtacg caatatggcg agctggcgca ggcaggaata caacgattgc tgccggggcc
    10861 gacgggtgaa cgcaacacct ggacgctgct gccgcgtgag cgcgtgttgt gtattgccga
    10921 tgatgagcag gatgcgctga ctcagctcgc cgccgtgctg gcggtgggca gccaggtact
    10981 gtggccggat gacgcgctgc atcgtcagct agtaaaggca ttgccatcgg cagtcagcga
    11041 acgtattcaa ctggcgaaag cggaaaatat aaccgctcaa ccctttgatg cggtgatctt
    11101 ccacggtgat tcggatcagc ttcgcgcatt gtgtgaagcc gttgctgcgc gggatggagc
    11161 aattgtttcg gtgcagggtt ttgcccgtgg cgaaagcaat atccttctgg aacggctgta
    11221 tatcgaacgt tcgctgagtg tgaataccgc tgccgctggc ggtaacgcca gtttaatgac
    11281 gatcggttaa acaggtagcc ggaggatgtt acaccctcct ccggcatctt taacgtggtc
    11341 gaatcccctc aataataatc cgctgcacgt tttcaaccgt ttgattgaaa aatacctcat
    11401 cgcgcaacgt tgcgcctgtc accgcctcca cctgaggggc gaaatcggcg taatgttgag
    11461 tggaagccca aataataaaa atcaaatgct gcggatcaat cggcgcgagt ttgccgcttt
    11521 tgacccaacc ggcaatcagc gccgatttct catcaattaa tgccttcaaa tcgcccgtca
    11581 gttcatccat taacagcggc gcgcctgcca gcatctccat acagaacagg cgcgaagcct
    11641 gcggataatc gcgtgagact tccagcttca gacggatgta ctctttgatc gccgccagcg
    11701 gggcgaaatc ttcacgaaac gcttttaacg gtgccagcca gatatcgaga atctgccgca
    11761 gcacggcaat atacagcgcc tcttttgacg gaaagtaata cagcagattg gtttttgaaa
    11821 cacccgccaa ctctgcgatc tgctccagcc ttgtgccgtg aaaaccgaat tgtgaaaaag
    11881 tgtccagtgc tgcgctaaga atcgcttttt tcttcgcgct tactgcgcgc gaacgtttac
    11941 ccgttgtttt cactgcgcct tgcgtcatgc gctctcccct cttgtagatt ggcaacagga
    12001 tagcaaaacc cccgcccggc ctcgaccttc tgcactctca tcgcgcacgg atgcatgttt
    12061 tatgtgcaac tgttttgacc gtttagtcca ctttttacca gatattttag ataacacaat
    12121 gctaacacat taataacatt cactttttaa aaactggcat ccgctttgca aacaagccaa
    12181 tacgcggctg aaaaggatat gcaggatgca gcgccccgtc tgactttcac tttacgagac
    12241 gaagagaggt tgatgatgaa aattggcgta ttcgtaccta ttggcaacaa cggctggctc
    12301 atttcgaccc acgcgccgca gtacatgccg acctttgaac tgaataaagc cattgtgcaa
    12361 aaagcggagc attaccattt cgatttcgcc ct
//
LOCUS       DAJVUY010000126        12044 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.126, whole genome shotgun sequence.
ACCESSION   DAJVUY010000126 DAJVUY010000000
VERSION     DAJVUY010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12044
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.126"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..413)
                     /locus_tag="OQQ72_003099"
     CDS             complement(<1..413)
                     /locus_tag="OQQ72_003099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS2012746.1"
                     /translation="MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTA
                     LALFDLLKPNYVLTTQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVV
                     VVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSVG"
     gene            569..1609
                     /gene="gpr"
                     /locus_tag="OQQ72_003100"
     CDS             569..1609
                     /gene="gpr"
                     /locus_tag="OQQ72_003100"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HCS2012747.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKDDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1649..2143)
                     /locus_tag="OQQ72_003101"
     CDS             complement(1649..2143)
                     /locus_tag="OQQ72_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HCS2012748.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2334..3218
                     /gene="yghA"
                     /locus_tag="OQQ72_003102"
     CDS             2334..3218
                     /gene="yghA"
                     /locus_tag="OQQ72_003102"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS2012749.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3490..3915)
                     /gene="exbD"
                     /locus_tag="OQQ72_003103"
     CDS             complement(3490..3915)
                     /gene="exbD"
                     /locus_tag="OQQ72_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HCS2012750.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3922..4656)
                     /gene="exbB"
                     /locus_tag="OQQ72_003104"
     CDS             complement(3922..4656)
                     /gene="exbB"
                     /locus_tag="OQQ72_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS2012751.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4908..6095
                     /gene="metC"
                     /locus_tag="OQQ72_003105"
     CDS             4908..6095
                     /gene="metC"
                     /locus_tag="OQQ72_003105"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCS2012752.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6235..6894
                     /locus_tag="OQQ72_003106"
     CDS             6235..6894
                     /locus_tag="OQQ72_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS2012753.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6934..7833)
                     /gene="yqhC"
                     /locus_tag="OQQ72_003107"
     CDS             complement(6934..7833)
                     /gene="yqhC"
                     /locus_tag="OQQ72_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001407451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YqhC"
                     /protein_id="HCS2012754.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            8027..9190
                     /gene="yqhD"
                     /locus_tag="OQQ72_003108"
     CDS             8027..9190
                     /gene="yqhD"
                     /locus_tag="OQQ72_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HCS2012755.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT
                     GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK
                     FIAAADNYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE
                     GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF
                     EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR"
     gene            9295..10122
                     /gene="dkgA"
                     /locus_tag="OQQ72_003109"
     CDS             9295..10122
                     /gene="dkgA"
                     /locus_tag="OQQ72_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HCS2012756.1"
                     /translation="MANPTVIKLQDGNVMPQLGLGVWQASNEEVIIAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            10322..11248
                     /locus_tag="OQQ72_003110"
     CDS             10322..11248
                     /locus_tag="OQQ72_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HCS2012757.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            11299..11556
                     /gene="yqhH"
                     /locus_tag="OQQ72_003111"
     CDS             11299..11556
                     /gene="yqhH"
                     /locus_tag="OQQ72_003111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HCS2012758.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            11636..>12044
                     /locus_tag="OQQ72_003112"
     CDS             11636..>12044
                     /locus_tag="OQQ72_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001603762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012759.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVDDAFVSAEIIQSTHLNGGRTHVLLQ
                     LVIKQNRTDIHRLLGLMLVRENDNHRWLIEDIDD"
BASE COUNT         3117 a         3055 c         3003 g         2869 t
ORIGIN      
        1 ccaacggaac ttaagccgtc aggtgccagg gcgatatacc ccgccttcgt cactcgccgt
       61 gccacatctt cgatatacgg attcagtcca cgattctcat gcaccaccac cacggctggc
      121 gttttgccgc tcatttttgc gggtttcacc agataacccc gtacctcgcc gtgaccattt
      181 ggcgaaggat acgtgatgta ctcagcaaca atctccgggt cggtaaactc tacctgagtc
      241 gtcagcacat aatttggctt gagcaaatca aacaacgcta atgccgtcat cccgcccacc
      301 gcatacttcg ccgcaaggtt gaggaactca cgtttcgaaa ttttcccgtg agcgtaatag
      361 tcgtagtaat ccaacaactc ttgtgggaaa tctttggcgg ttaaacgcgg catcgttgca
      421 ttcctcaact ggtgtttttt aagcaaagca taagcgcgtg tttttgccca gtttttcgtc
      481 actctgtgag ccagactacg ggatacgcgc tggcgaatcg ctaaactaga aacattgttt
      541 cgaaattgaa cggtggaaag gagaggtcat ggtctggtta gcgaatcccg aacgttacgg
      601 gcagatgcag taccgctatt gcggaaaaag tggtttacgc ctgcccgcgt tatcgctcgg
      661 tttatggcac aatttcggtc acgttaacgc gctggaatca cagcgtgcaa tcctgcgtaa
      721 agcgtttgat ttaggcatta cgcactttga tttagccaac aattacgggc cgcctccagg
      781 aagcgcagaa gagaactttg gtcgcctgct gcgggaggat tttgccgctt atcgcgatga
      841 actgattatc tctaccaagg ctggctacga tatgtggccc ggcccttacg gctctggcgg
      901 ttcacgtaaa tacctgctcg ccagcctcga ccaaagcctg aagcgtatgg ggcttgagta
      961 tgtcgatatc ttttactctc atcgcgtcga tgaaaatacg ccgatggaag aaaccgcctc
     1021 tgcgctggct catgcggtac aaagcggtaa ggcgctgtat gtcgggatct cctcttactc
     1081 gccagagcgg acgcaaaaaa tggtcgagtt gctgcacgag tggaaaattc cgcttttaat
     1141 tcatcaacct tcgtacaatt tactgaaccg ctgggtggat aaaagcggcc tgctggatac
     1201 cctgcaaaat aacggcgtgg gctgtattgc ctttactcct ctggctcagg gattgctgac
     1261 cggaaaatat ctcaacggca ttccgcaaga ttcacggatg catcgtgaag ggaataaagt
     1321 tcgtggtctg acgccgaaaa tgcttaccga agccaacctc aacagcctgc gcttattgaa
     1381 tgaaatggca cagcagcgtg gacaatcaat ggcgcaaatg gcgttaagct ggttgctgaa
     1441 agatgatcgc gtgacgtcgg tattgattgg tgtcagccgc gcggagcaac tagaggagaa
     1501 cgtgcaggcg ctgaataatc tgacatttag caccgaggag ctggcgcaga ttgatcagca
     1561 tatcgccgat ggcgagctga atctgtggca ggcgtcttcc gataaatgac ctgttaataa
     1621 cgggcgcgcg aaccgcgccc gaatcagatc agtgattatg acgagtcagt cggtcaagat
     1681 agcccatcac aaatgcagag agcacaaacg tcagatggat aatgacgtac cacatcagtt
     1741 tgttatccgg gacatttttc gcatccataa agacgcgcag taagtgaatg gaagaaattg
     1801 ccacaatcga cgctgctact ttgtttttca gcgacgttgc gtccattttc cccagccagt
     1861 tcagcttctc tttgttctcg gagatatcca gctgcgagac gaaattctca taaccggaaa
     1921 acatcaccat caccagcaaa ccgccaacca gcgtcatatc caccagcgac agcaacacga
     1981 ggatcaaatc tgattccgcc atcgagaaga tattcggcag tacgtgaata atctcctgga
     2041 agaacttcag cgccagggca actaacgcca gcgaaaggcc aaagtacacg ggggcaagca
     2101 gccagcgaga agcatacatt gcattttcaa gaaaacgttc catacattcc tgtcgtgtag
     2161 ttaaaacggg caacagtata tcgcaattga gtaaacagca cgcaacagca aatcaacata
     2221 tacgttaaac ctttgtcgca taattctgag gtttagggat cttcctggtt cccttatcaa
     2281 cgcatcgaga gcgtctaccc ttaaaagacg ttgaacctga agggagaaaa acaatgtctc
     2341 atttaaaaga cccgactacg cagtattaca ctggtgaata tcccaaacag aaacaaccga
     2401 cgccaggcat ccaggcgaag atgacaccgg taccggattg cggcgagaaa acctatgttg
     2461 gtagcggtcg cctgaaagat cgtaaagcac tggtgacagg gggcgattcc ggaataggtc
     2521 gcgctgccgc catcgcttac gcgcgtgaag gggctgacgt ggcgatcagt tatcttcccg
     2581 tggaagaaga agacgctcag gatgtgaaaa agatcattga agaatgcgga cgcaaagccg
     2641 ttctgctgcc aggcgattta agcgatgaga aattcgcccg ttcgctggtt cacgaagcgc
     2701 acaaggcgtt aggcgggctg gatattatgg cgctggtcgc cgggaaacag gttgccattc
     2761 cggatattgc agacctcacc agcgaacagt ttcaaaagac ctttgccatt aacgttttcg
     2821 cgctgttctg gctaacccag gaagcgatcc ccctgctacc gaaaggtgca agtatcatca
     2881 ccacttcgtc aatccaggca taccagccaa gtccgcattt actggactat gcggctacga
     2941 aggcggcgat tctgaactac agccgtggcc tggcaaaaca ggtcgcggag aaaggtattc
     3001 gggtgaatat tgtcgcgcca ggccctatct ggacggcact gcaaatttcc ggcggacaaa
     3061 cgcaggataa gatcccgcag tttggtcagc aaacgccgat gaagcgtgcg gggcaaccgg
     3121 cggaactggc ccctgtatat gtttatctgg caagtcagga gtcgagctac gtcaccgcag
     3181 aagtgcacgg tgtgtgcggc ggcgagcatt taggttaaaa aaatgcccgg ttgtgaaaag
     3241 caaccgggca tcattgtgaa ttcactctta cctgatgtgg cgaaaacgcc ttatccgcct
     3301 acaaacgcat gaagattcaa catgttgcaa tagattttgt aggcctgata agcgtagcgc
     3361 atcaggcatt gagcacctaa tgccggatgc ggcgtgaacg ccttatccgg cctacaaacg
     3421 cacgaagatt caacatgttg caatagattt tgtaggcctg atgagcgtag cgcatcaggc
     3481 aattctactt tacttcgctt tggcggtttc ttcgccgacc agacctatct tcaggtaacc
     3541 cgcctgatgc agcgtatcca ttaccttcat caacgtctcg taatcgacgg ttttatccgc
     3601 tcggaagaag atggtggtgt ctttcttgcc ttcggttaac gcattcaacg ccgtaatcat
     3661 tgtttcatcg gtgaccggat cgttaccgat aaacatcgag ttgtctgcct tcaccgacag
     3721 ataaaccggt ttttccgggc gcggctgcgg cgtgctggta gaagcaggca agttcacctt
     3781 cacatctacc gtcgctaacg gtgccgccac cataaagata atcagcagaa ccaacatcac
     3841 gtcgataaac ggcgtcacgt tgatatcatg catttcgccg ttatcgtcga ggttttcgtt
     3901 aagatgcatt gccatcggat attatcctgc gcgtaatttt tgtgcgacac gaaccggatg
     3961 cgcagcggcg ctggcttcca gatccaggtc acggctttgc agcaacaata cctgcgctgc
     4021 aacatcaccc agcatcgctt taaagccgcc aatctggcgt gcaaatacgt tatagataac
     4081 gaccgcagga atcgctgcca cgaggccgat tgccgttgct aacagagctt ctgcgatacc
     4141 cggcgcaacg actgccaggt tagtggtctg cgtttgcgcg ataccaataa agctgttcat
     4201 gatgccccag accgtaccaa acagaccaac gaacggagaa atcgcgccga tggttgccag
     4261 atagccgtta ccgcggccca tttgacgacc cactgcggcg acccgacgct ccagacggaa
     4321 gctggtacgt tctttaatac cttcgttatc gtcgctgcct tctgacagtt ccagctcatt
     4381 ctgcgcttca ttgaacaaat gcaggcttaa gcttttgcta ccaaaatcag cggcgatatc
     4441 gttggcctgg tttaaggaac gcgcttcagc cagcagttgc tgctcgcgct ttaggcgacg
     4501 cttctgattg aagaactcta cgctcttact gaagaagatt gcccaggtga ctacggaggc
     4561 caaaataagc ccaatcatca cgcacttaac gacaatatcg gcgtgctgat acatacccca
     4621 gacggaaagg tctgtctgca ttaaattatt acccactgtg tatctccagg acgcaagtca
     4681 caaaatctgc gcataataat atcaaaacga cgtcgaattg atagtcattc tcattactat
     4741 ttgcatactg ccgtaccttt gctttctttt ccttgcgttt acgcagtaaa aaagtcacca
     4801 gcacgccatt tgcgaaaatt ttctgcttta tgccaattct tcaggatgcg cccgcgaata
     4861 ttcatgctag tttagacatc cagacgtata aaaacaggaa tcccgacatg gcggacaaaa
     4921 agcttgatac tcaactggtg aatgcaggac gcagcaaaaa atacactctt ggcgcggtaa
     4981 atagcgtgat tcagcgcgct tcttcgctgg tatttgagag tatggaagcc aaaaagcacg
     5041 cgacgcgcaa tcgcgccaat ggcgagttgt tctatggacg gcgcggaacg ttaacccatt
     5101 tttccttaca acaagcgatg tgtgaactgg aaggtggcgc aggctgcgcg ctatttccct
     5161 gcggggcggc agcggttgct aattcgattc ttgcttttgt cgaacagggc gatcatgtgt
     5221 tgatgaccaa cactgcctat gaaccgagtc aggatttctg tagcaaaatc ctcagcaaac
     5281 tgggcgtaac gacatcgtgg tttgatccgc tgattggtgc cgatatcgtt aagcatctgc
     5341 agccaaacac taaaatcgtg tttctggaat cgccaggctc catcaccatg gaagtccacg
     5401 acgttccggc gattgttgcc gccgtacgca gtgtggtgcc ggatgccatc attatgatcg
     5461 acaacacctg ggcagccggt gtgctgttta aggcactgga ttttggcatc gatgtttcta
     5521 ttcaagccgc caccaaatat ctggttgggc attcagatgc gatgattggc actgccgtgt
     5581 gcaatgcccg ttgctgggag cagctacggg aaaacgccta tctgatgggc cagatggtcg
     5641 atgccgatac cgcctatata accagccgtg gcctgcgcac attaggtgtg cgtttgcgtc
     5701 aacatcatga aagcagtctg aaagtggctg aatggctggc agaacatccg caagtagcgc
     5761 gagttaacca ccctgctctg cctggcagta aaggacacga attctggaaa cgagacttta
     5821 caggtagcag cgggctgttt tcctttgtgc ttaagaaaaa actcagtaat gaagagctgg
     5881 cgaactatct ggataacttc agtttattca gcatggccta ctcgtggggc gggtatgaat
     5941 cgttgatcct ggcgaatcaa ccagaacata tcgccgccat tcgcccacaa ggcgagatcg
     6001 attttagcgg gaccttgatt cgcctgcata ttggtctgga agatgtcgac gatctgattg
     6061 ccgatctgga cgccggtttt gcgcgaattg tataacattg ccacttttgg acaattttgc
     6121 agacatttaa ttgtgaaaag tcttaaattg ttgcgtccgg gatcaaggcg tcccggacga
     6181 atcaggagta caataggcag ataaaggctt aaacgctgtt ccacaggaaa gtccatggct
     6241 gttattcaag atatcatcgc tgcgctctgg caacacgact ttgccgcgct ggcggatcct
     6301 catattgtta gcgttgttta ctttgtcatg tttgccacgc tgtttttaga aaacggcctg
     6361 ctgcccgcct catttttgcc aggcgacagc ttgttgatac tggcaggcgc attgattgcc
     6421 cagggggtta tggattttct gcctacgatt gcgattctga ccgccgcagc aagtctgggc
     6481 tgctggctaa gttatattca ggggcgctgg ttagggaata ccaaaacggt gaaaggctgg
     6541 ctggcacagc ttcctgctaa atatcaccag cgcgccacct gcatgtttga ccgccacggt
     6601 ctgctggcgc tgctggctgg acgttttctt gcatttgtcc gtacgctgct gccaaccatg
     6661 gcgggaattt ccggtctgcc aaaccgtcgc ttccagtttt tcaactggtt aagtggattg
     6721 ctgtgggtca gcgtggtaac cagttttggc tatgccttaa gtatgattcc gttcgttaaa
     6781 cgccatgaag atcaggtaat gacgttcctg atgatcctgc caattgcctt gttaaccgct
     6841 ggcttgttag gcatgctgtt tgtggtgatt aaaaaaaaat actgtaacgc ctgacgattt
     6901 tccccgttcc cggctgctgt accgggaacg tatttaattc ccctgcatcg cccgcattct
     6961 tgccgcatct tcccccggcg tcacaccgaa gtaacgttta aactcacggc taaattgcga
     7021 tgcgctttca tagccgacgc gcatcgctgc tgcgctggcc ttcatgccgt catggatgat
     7081 catcatccgc gccttatgca gacggtaatt cttcaaatac tgcaacggcg aggtgctggt
     7141 gacagactta aaattatggt ggaacgccga tacgctcatg ttggcttctg ccgccagttg
     7201 ctcgacgctc aggttttcgg tgtatttatt ctcaatccgt ttcagcacgc ggctaatcag
     7261 actgaagtga gtctggcgac tgaccagcgc cagtaacgcg ccgccgcaag gtccggtcag
     7321 cacgtagtac agaatttcgc ggatgatctg tttgccgaga atacgcgcat ccagtggtcg
     7381 ctccatcacg tcgagtaacc gctccgccgc gcataaaatc tcttctgata acgtggcgga
     7441 gttaatcccg ctggctgcca tcgacggctg gaaatgctca tcttcgccaa tgtccatcaa
     7501 cagttcctgt aactgcaaaa tatcgacatt gagacgcaac cctgccagcg gcacctctga
     7561 cgtggcatag gtttcgcact caaacggcaa cggcaccgtc agcagcaggt attcattggc
     7621 atcataacga aacacgcgtt cattgatata accgatttta tgcccggaaa agagaattat
     7681 gatgccaggc tcgtacatca ccggtgtacg tgcgaaaggc gtctcaccat acaacaaacg
     7741 cacatcgggc aacagttctg acaaactatt ttctttattt ttcagtttat taactttatc
     7801 cgccagcaag cggcaaatct cttcacgttt catatcgcgt aatttcttag gaataatgcg
     7861 gcaatttgat tgtgcgcaat tttgtagcat ttctccagca ctctggagaa ataggcaaga
     7921 cattggcaga aatgagcatt gagagccagg gcgctggcga tcacaatgaa aaacatcagg
     7981 cagatcgttc tctgccctca tattggccca gcaaagggag caagtaatga acaactttaa
     8041 tctgcacacc ccaacccgca ttctgtttgg taaaggcgca atcgctggtt tacgcgaaca
     8101 aattcctcac gatgctcgcg tattgattac ctacggtggc ggcagcgtga aaaaaaccgg
     8161 cgttctcgat caagttctgg atgccctgaa aggcatggac gtgctggaat ttggcggtat
     8221 tgagccaaac ccggcttatg aaacgctgat gaacgccgtg aaactggttc gcgaacagaa
     8281 agtgactttc ctgctggcgg ttggcggcgg ttctgtactg gacggcacca aatttatcgc
     8341 cgcagcggat aactatccgg aaaatatcga tccgtggcac attctgcaaa cgggcggtaa
     8401 agagattaaa agcgccatcc cgatgggctg tgtgctgacg ctgccagcaa ccggttcaga
     8461 atccaacgca ggcgcggtga tctcccgtaa aaccactggc gacaagcagg cgttccattc
     8521 tgcccatgtt cagccggtat ttgccgtgct cgatccggtt tatacctaca ccctgccgcc
     8581 gcgtcaggtg gctaacggcg tagtggacgc ctttgtacac accgtggaac agtatgttac
     8641 caaaccggtt gatgccaaaa ttcaggaccg tttcgcagaa ggcattttgc tgacgctgat
     8701 cgaagatggt ccgaaagccc tgaaagagcc agaaaactac gatgtgcgcg ccaacgtcat
     8761 gtgggcggcg acgcaggcgc tgaacggttt gattggcgct ggcgtaccgc aggactgggc
     8821 aacgcatatg ctgggccacg aactgactgc gatgcacggt ctggatcacg cgcaaacact
     8881 ggctatcgtc ctgcctgcac tgtggaatga aaaacgcgat accaagcgcg ctaagctgct
     8941 gcaatatgct gaacgcgtct ggaacatcac tgaaggttcc gacgatgagc gtattgacgc
     9001 cgcgattgcc gcaacccgca atttctttga gcaattaggc gtgccgaccc acctctccga
     9061 ctacggtctg gacggcagct ccatcccggc tttgctgaaa aaactggaag agcacggcat
     9121 gacccaactg ggcgaaaatc atgacattac gttggatgtc agccgccgta tatacgaagc
     9181 cgcccgctaa gctttttacg cctcaaactt tcgttttcgg gcatttcgtc cagacttaag
     9241 ttcacaacac ctcaccggag cctgctccgg tgagttcata taaaggagga acgtatggct
     9301 aatccaaccg ttattaagct acaggatggc aatgtcatgc cccagctggg actgggcgtc
     9361 tggcaagcaa gtaatgagga agtaatcatc gccattcaaa aagcgttaga agtgggttat
     9421 cgctcgattg ataccgccgc ggcctacaag aacgaagaag gtgtcggcaa agccctgaaa
     9481 aatgcctcag tcaacagaga agaactgttc atcaccacta agctgtggaa cgacgaccac
     9541 aagcgccccc gcgaagccct gctcgacagc ctgaaaaaac tccagcttga ttatatcgac
     9601 ctctacttaa tgcactggcc cgttcccgct atcgaccatt atgtcgaagc atggaaaggc
     9661 atgatcgaat tgcaaaaaga gggattaatc aaaagcatcg gcgtgtgcaa cttccagatc
     9721 catcacctgc aacgcctgat tgatgaaact ggcgtgacgc ctgtgataaa ccagatcgaa
     9781 cttcatccgc tgatgcaaca acgccagcta cacgcctgga acgcgacaca caaaatccag
     9841 accgaatcct ggagcccatt agcgcaagga gggaaaggcg ttttcgatca gaaagtcatt
     9901 cgcgatctgg cagataaata cggcaaaacc ccggcgcaga ttgttatccg ctggcatctg
     9961 gatagcggcc tggtggtgat cccgaaatcg gtcacacctt cacgtattgc cgaaaacttt
    10021 gatgtctggg atttccgtct cgacaaagac gaactcggcg aaattgcaaa actcgatcag
    10081 ggcaagcgtc tcggtcccga tcctgaccag ttcggcggct aacatgcaaa ttctcccggt
    10141 ggcggtaatg ttccgctacc ggacttttca gaaatcattt attcccctcg cgtcccgccc
    10201 gttgttactc ttccttgttc aggaatgcca aatataagga catcatcatg cagagccgga
    10261 agctcttaaa agaacaactc atctatatcc gggataaacg caacggagag gtgaaaaaca
    10321 gatgaaaata atacttctgt ttttagcagc cctggcaagt tttaccgtac acgcgcagcc
    10381 tccttcacag accgtagaac aaacagtccg gcagatttat cagaactata aatcagatgc
    10441 cagtacgcct tatttcggtg aaaccggaga gcgggcgata acttcagcgc gtattcaaca
    10501 ggcgcttacc ctgaacgaca atcttacgct gccgggcaat attggctggc tggattatga
    10561 tccggtttgt gattgtcagg attttggcga tctggtgcta gaaagcgttg cgataaccca
    10621 aactgacgcc gatcatgccg atgccgttgt gcgctttcgt atctttaaag atgataaaga
    10681 aaagaccacg cagacactga aaatggtggc ggaaaatggt cgttgggtca ttgacgatat
    10741 tgtcagcaat catggcagtg tcttacaagc agttaatagc gagaatgaaa aaacgctggc
    10801 cgctttagct tcgttgcaaa aagaacagcc ggaagccttt gttgccgaac tctttgaaca
    10861 tattgctgat tatagctggc cgtggacgtg ggtggtttcc gactcttacc gccaggcggt
    10921 taatgccttc tataaaacca ccttcaagac ggccaataat cccgatgaag atatgcaaat
    10981 agaacggcaa tttatttacg acaatccgat ctgttttggc gaagagtcgc tattttcacg
    11041 cgttgatgaa attcgagtcc tggagaaaac cgccgattcc gcccgcattc atgttcgttt
    11101 tacgctgacc aatggcaaca acgaagagca agaactggtt ttacagcggc gcgaaggcaa
    11161 gtgggaaatc gctgatttta tccgcccgaa cagcggcagc ctacttaagc agattgaggc
    11221 aaaaactgcc gccagattaa agcaatgagc tgaattaaat aacaattagc cggaacaata
    11281 aataaaaggg aacactatat gaaaacgatt ttcaccgtgg gagctgttgt tctggcaacc
    11341 tgcttgctca gtggctgcgt caatgagcaa aaggtcaatc agctggcgag caatgtgcaa
    11401 acattaaatg ccaaaatcgc ccggcttgag caggatatga aagcactacg cccacaaatc
    11461 tatgctgcca aatccgaagc taacagagcc aatacgcgtc ttgatgcaca ggactatttt
    11521 gattgcctgc gctgcttgcg tatgtacgca gaatgataaa aaaatccccg gcagcatgtc
    11581 agttgccggg ttataggctg tttgctaaaa aaaagccaaa cataaggaca tgattatgcg
    11641 acgctggcac acctgttttt ttattctgct gttctgtggc ttcagcggaa acgtgttgtg
    11701 caaagaatcg attaatgaag cgatagaacg tttgtaccaa ccattgacca gtaatgacga
    11761 tataccaata accgatgaat tcagtctcga tttgcgaagt aatatgagcg ctactcctgg
    11821 caaaatgaca ccctggctga ataataatct tttgtgtcgc tgtgtcgatg acgctttcgt
    11881 ttctgcagaa ataatccaaa gcacacacct aaatggcggc cgaacgcatg tactgttgca
    11941 gctggttatc aaacaaaatc gcacagatat ccaccggtta ctggggctaa tgctggttcg
    12001 tgaaaatgat aatcatcgtt ggctaataga agacatcgat gacg
//
LOCUS       DAJVUY010000127        12028 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.127, whole genome shotgun sequence.
ACCESSION   DAJVUY010000127 DAJVUY010000000
VERSION     DAJVUY010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12028
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.127"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..192
                     /locus_tag="OQQ72_003113"
     CDS             <1..192
                     /locus_tag="OQQ72_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS2012760.1"
                     /translation="RGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGT
                     NTLLACCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="OQQ72_003114"
     CDS             182..355
                     /locus_tag="OQQ72_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HCS2012761.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1476)
                     /locus_tag="OQQ72_003115"
                     /pseudo
     CDS             complement(404..1476)
                     /locus_tag="OQQ72_003115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
     gene            complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ72_003116"
     CDS             complement(1548..4292)
                     /gene="torS"
                     /locus_tag="OQQ72_003116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HCS2012762.1"
                     /translation="MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPMLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4375..5364
                     /gene="torT"
                     /locus_tag="OQQ72_003117"
     CDS             4375..5364
                     /gene="torT"
                     /locus_tag="OQQ72_003117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HCS2012763.1"
                     /translation="MRVLLFLLLSLFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRA
                     WKLCALYPSLKDSYWLSLNYGMQEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF
                     PDLQKQVANLPVIELVNALDDPLVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP
                     GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG
                     TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMIWQGELAVEQA
                     IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK"
     gene            complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ72_003118"
     CDS             complement(5337..6029)
                     /gene="torR"
                     /locus_tag="OQQ72_003118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HCS2012764.1"
                     /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGECYFLAADVC"
     gene            6149..7321
                     /gene="torC"
                     /locus_tag="OQQ72_003119"
     CDS             6149..7321
                     /gene="torC"
                     /locus_tag="OQQ72_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HCS2012765.1"
                     /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST
                     TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ
                     TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQM
                     KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK
                     GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD
                     VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHG
                     APEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDIAGKAHGDKKEEK"
     gene            7321..9869
                     /gene="torA"
                     /locus_tag="OQQ72_003120"
                     /pseudo
     CDS             7321..9869
                     /gene="torA"
                     /locus_tag="OQQ72_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9866..10465
                     /gene="torD"
                     /locus_tag="OQQ72_003121"
     CDS             9866..10465
                     /gene="torD"
                     /locus_tag="OQQ72_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HCS2012766.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ72_003122"
     CDS             complement(10558..10863)
                     /gene="cbpM"
                     /locus_tag="OQQ72_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HCS2012767.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ72_003123"
     CDS             complement(10863..11783)
                     /gene="cbpA"
                     /locus_tag="OQQ72_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HCS2012768.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2891 a         3088 c         3182 g         2867 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgaccagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga tcaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggagcgtgga cggacggtaa
     1201 ctgacctgtt gtaaggctat atttcagatt catcagaccg gcaatcggta gccagccttc
     1261 gatacctccc ggtctggcga caaatgtcgt gctacttgcc gtttcgtaat agcgcaccca
     1321 ataccagaac gtgatggcaa tataaatatt cattgccaac agtaataatt gcgtcgcttt
     1381 acgccaggtc gtggcattgc gccagtcatt ccacggtaat ttgccgcccg tcgtgcctgg
     1441 ccgccgctgc cagcgggttc tttttttctc tgccatgatt ttgtcagtcc gttaagttgc
     1501 ataccaaatg ccactatttt agttgttctt aactggctga tattgattca aatcgcgttc
     1561 aggtctttct tatgcaacca tgcttccaga gcggcaacac tgcgtgtaat ttcttcgtgt
     1621 ggaagggggg cagataatgg ctgctgctcc agttgtgcgc atagctggct ggcgatacgc
     1681 attcccaaac tcgagcaact gctttttagc tgatgcgcgg cacgctttat tttctcgcta
     1741 tcctgactgg cgcgggcaat gtcgatttca tcgagaagcg gcagggcatg ttgtgtaaat
     1801 aataccagcc attcgtggat cttctccgtc cccattaact gagcatcttc attgagttgc
     1861 gatacatcca gcgattgatc gttattgact tgcagttgga gatagtgcgc cagtaactga
     1921 ccgagcactt cacgcggcac cggtttaggg ataatcccgc ggaataatga actggtacgc
     1981 tggcgcagcg tttcgtcaat gacatgggcg ctaaagccaa tcaaaaccag cgacggatat
     2041 tgctgtgcca gttgtcgggc aagcgtaatg ccgtcgacat ccggcagatc aaaatccacc
     2101 agtgcggcag caaacggttc gctattttgc agtgtctcta aagcctgcgc ggcattgcca
     2161 acagcaacaa cctgcgcacc actggtgttc agcatctcaa cggtaattcg ctgggttagc
     2221 gggttatctt caattaacag caaacgtaaa ccgtcaagac gcaccgcctg attgactgtt
     2281 tttggcacgg gtgccgtggc aacacgtaac ggcaagcgta aacaaaaaca gcttccaacc
     2341 tccggcgtgc tggtggcgct cagttcgccg cccatcgcct gggccagacg gctactgata
     2401 gtcagtccca gcccggtgcc gccgcgtttg ccgcttacct gcacaaatgg ctggaagatt
     2461 tctgccagtt tcgcgggatc aataccgcag ccgctgtctt ccacttcgac cagccattgc
     2521 tcgccatcag tgcggctacg taaaacgatc tgcccttcgt cagtaaaacg cagggcgttg
     2581 ctcaacaggt tggttataac ctgacgaata cgtcgcggat cgcccattaa cgcggtcggt
     2641 acatcgtcgg caattgctgt tgccaggcga atcgggcgac ctttcacccg tccgctcatt
     2701 aattgcaggg tactttccag cagcgggcgc ggttcaaagg gctcatcgct gaccgaaaca
     2761 ttcttgccac ctgcttcgat agccgaataa tcgagaatat cgttgaggat ggtcagcaac
     2821 gattcgccag agtcggtaat cgcccgcaaa tcatcacgct gggcgttaag tgcggggtta
     2881 tctgccagca gttgagcagt gccgagaata ccgtacagcg gtgtgcggat ctcatggctc
     2941 atcgccgcca gaaaggccga ttttgcctgg ctggcttttt ctgcttccgc ccgtgcctgt
     3001 cggtgttcta tcaccagttc ctgcaattca gctgtacgcg ctttgacctg cgccgccagc
     3061 tgttcacggt ggcgattcag tgcatgaaca gtgctgcgaa acgcatccat cagccgcccg
     3121 atggtatcca gctcccgtac gccagcggtt tccgggaaag gggagtcaat atcaccgtcc
     3181 agcagccgtt gcagcgcctg cgtttgttcg gcaagtggac gcgtgactga gcgataaacc
     3241 acgcgccaaa ggatcagaat cagtgcgcaa agtgaaacca tccccagcaa taacaggctg
     3301 tattgcccgc gtgcactggc tttttccaga tgcgccagtc cgtgctgatt acgcagctca
     3361 atggtgtcga ccagctgact gacttcgcta ctaaactgcg cgaactgggc gatgttattt
     3421 tgtgcgagag tttgtaggtg attgctgatt tcactgtcct gctgatacag cgccagcaaa
     3481 tcgctatatt ggctaacggt agttaacgtt gttgcgacct gcgcacgaac acccggatct
     3541 tcaatgcgta tttgccgacg ttgcagaatt ttcaccgcat tattgagctg cttttccagc
     3601 attggtgcat ttttctggat ctgctccagc cccagattca tcaccatttg ctgcacccgc
     3661 agagcgctaa ggcgcagttc attcatctgg ttaacatact caagatcgat atcaatcagc
     3721 cgatcgagtg cactttcagc agcctgacgc tgatcttgtt cgatcaaatc gtaaatcccg
     3781 gcctgggtcg ctccagcgga agttgtcgca ttattcgcct gaccttgcgc caggcgtgcg
     3841 atctcatcgg cggcagcgac tatctgctga ctgagttgct gttgttgctg gcgtagttgc
     3901 agacgccgcc ccaccagttc cccttgctga cgtaacgaac gggagatctc ctgctcctgt
     3961 tgttcaatag cggtggtatc aaaaccttgt tcccgtaacg cttgcagcaa cgcattaatc
     4021 ttcaggcttt gtgcggtgag cattcgcccc tgcgcctgcc acatcttttc gttatcggca
     4081 ctggtcaggt tctgcgcggc gaaaagttcc caggcgctgg cttcgctcaa ctggcgcgcc
     4141 atattcatgg taggaatcaa tgcctgagtg ttgtcttttt ccacctggct gataaagcgc
     4201 aggttgtacc atcccaccag ggtactggtc agggttaaca gcgccatcag ggcaaagccc
     4261 atccagagtc ttcgggtcag ggttaaattc acggtcggtg cactttaggt gaaaaaggtt
     4321 gagtcgcaaa gcagaatgca tctagcataa agccttatta ttgattaggc tatcatgcgc
     4381 gtactgctat ttttacttct ttcccttttc atgttatcgg cattttcggc tgataacctg
     4441 ttgcgctggc atgatgcgca gcattacacg gtgcaagcct ctacgccgct taaagccaaa
     4501 cgcgcatgga aactgtgcgc gctttatccc agcctgaaag attcatactg gttatcgttg
     4561 aactatggta tgcaggaggc aggcggctac agccagttgg ctacccagca agcacaaatc
     4621 gaccagtgta aacagtgggg cgcagaggcc attttgctcg gtagtagcac tacgtcattt
     4681 cccgacctgc aaaagcaggt agcaaatctg ccggtgatcg aactggtaaa tgctcttgat
     4741 gatcccctgg tgaaaagccg cgttggtgta ccctggtttc agatgggcta tcaacctggg
     4801 cgatatttgg tgcaatgggc gcacggtaaa ccactgaacg tgctgttgat gcccggaccc
     4861 gataatgccg ggggcagtaa agagatggtc gagggttttc gcgcagccat tgccggaagc
     4921 ccggtgcgta ttgttgatat tgcgcttggt gataacgata ttgaaatcca gcgtaacctg
     4981 ttgcaggaga tgctggaacg ccacccagaa atcgacgtcg ttgccggaac ggccattgcg
     5041 gcagaggcgg caatgggtga agggcgtaac ctgaaaacgc cgcttaccgt ggtgtcgttt
     5101 tatctttcac atcaggtgta tcgcgggctg aagcggggaa gagtgattat ggctgccagc
     5161 gatcaaatga tctggcaggg ggaactggcg gttgagcagg ccatcaggca attacagggg
     5221 caatcggtgt ctgataatgt cagcccaccg attttagttc tgacgccgaa aaatgccgac
     5281 cgtgaacata ttcgccgctc gctgtcacca gggggatttc gtccggtcta tttttatcag
     5341 cacacatcag cggctaagaa ataacattca ccatgttgcg tcaccagtaa atccgcgctg
     5401 agtttatgac gtaaacgacg aattaacaca tcgacggtgc gcaggtcagg gttttccacc
     5461 cgacgcgcag aaagcatacg tagcagacgt tcacggctga gaatttcgcc cggattcgtc
     5521 acaaatgcca ccaacatttc atactctgcg cgggtcagtt taatcggctc gccatcccgc
     5581 tccagcgtat ggcgcgacac attcaggcaa taaccggcaa agcgatagca gttgtcctga
     5641 gtgtgcggtt gagcttgtcg cgcgaggtcg attcgccaga gcagattttt cacccgtact
     5701 accagttcgc gcagttccag cggtttggtg acgtaatcgt ctgcgcccat ttccagccca
     5761 acaatacggt caatccgatc gctgcgtccg gtaaccagaa taatccccac cgttgagcgt
     5821 tctcgcaggg cgcgggttaa catcaggcca ttttcatcgg gtaagttgat atccagcaga
     5881 attaaatcta ccggctgatt ctgcataatt tcccgcagcc cggcaccgct cgctgtaacg
     5941 gaaacggtat acccctcctg agtgaagtaa gattgtaatc gcgcctgggt aaccggctca
     6001 tcttcaacaa taacaatgtg atgtggcatc agagggtttt actcattctg ttcatattct
     6061 gccgtaagcc gttcatcctg accagtgccg ctgttcatat ttgctcatta agatcgcttc
     6121 actaaaccat aattttacag gggctattat gcggaaactc tggaacgcgc tacgccgacc
     6181 cagtgctcgt tggtcggtac tggcgctggt cgcaattggg attgtgattg gcattgcgct
     6241 gattgtattg ccacacgttg ggatcaaagt caccagcaca accgaatttt gtgtcagttg
     6301 ccacagtatg caaccggtgt atgaagaata taaacagtcg gtgcatttcc agaacgcctc
     6361 cggcgtgcga gctgaatgcc atgactgtca tatcccgccg gatattccag gcatggtgaa
     6421 gcgcaaactg gaagcgagca atgatatcta ccagaccttt attgctcact ccattgatac
     6481 acctgaaaaa ttcgaagcca aacgcgcgga acttgccgag cgtgaatggg cgcgaatgaa
     6541 agaaaacaac tcggcaacct gccgctcctg ccataactac gatgcgatgg atcatgcgaa
     6601 gcagcatcct gaagcggcac gtcagatgaa ggtggcagcg aaagataatc aatcctgcat
     6661 cgactgtcat aaaggtattg cccaccagtt accggatatg agtagcggct tccgtaagca
     6721 gttcgatgag ctgcgcgcca gtgctaatga cagtggtgac acgctgtact ctattgatat
     6781 taagccaatt tatgcggcga aaggcgataa agaagcctct ggttctctgc tgcctgcttc
     6841 ggaagtgaaa gtccttaaac gtgacggcga ctggctgcaa attgaaatta ccggctggac
     6901 ggaaagcgcc ggacgtcagc gtgtactcac ccaattccca ggtaaacgca tctttgttgc
     6961 ctcgattcgt ggtgatgtgc agcagcaggt aaaaacgctg gagaaaacca ccgttgccga
     7021 caccaatacc gagtggagca agttgcaggc cactgcgtgg atgaagaaag gtgatatggt
     7081 gaacgatatc aaaccgatct gggcttatgc ggattcgttg tacaacggca cctgtaacca
     7141 gtgccacggc gcaccggaaa tctctcactt tgatgctaac ggctggattg gcacgctcaa
     7201 cggcatgatt ggctttacca gtctcgataa acgtgaagaa cgcaccttgt tgaaatatct
     7261 gcaaatgaat gcgtctgaca tcgcaggtaa ggctcacggc gataagaagg aagaaaaata
     7321 atgaacaata acgatctctt tcaggcatca cgtcggcgtt ttctggcaca actcggcggc
     7381 ttaacagtcg ccgggatgct ggggccgtca ttgttaacgc cgcgcagtgc gactgcggcg
     7441 caagcggcgg atgtcatctc gaaagagggc attcttaccg ggtcgcactg gggggctatc
     7501 cgcgcgacgg tgaaggatgg tcgctttgtg gcggcaaaac cgttcgaact ggataaatat
     7561 ccgtcgaaaa tgattgccgg attgccggat tgccggatca cgtacacaac gcggcgcgta
     7621 ttcgttatcc gatggtacgc gtggactggc tgcgtaagcg ccatctcagc gatacctccc
     7681 agcgcggtga taaccgtttt gtgcgcgtga gctgggatga agccctcgac atgttctatg
     7741 aagaactgga acgcgtgcag aaaactcacg ggccgagtgc cttgctgacc gccagtggtt
     7801 ggcaatcgac ggggatgttc cataacgctt cggggatgct ggcgaaagct attgccttgc
     7861 atggtaatag cgttggtacg ggcggagatt actctaccgg tgctgcgcag gtgatcctgc
     7921 cgcgcgtagt cggttcgatg gaagtgtatg aacagcaaac ctcctggccg ctggtattgc
     7981 agaacagcaa aaccattatg ctgtggggct ccgatttgct gaaaaaccag caagcgaact
     8041 ggtggtgccc ggatcacgat gtttatgaat attacgagca actaaaagcg aaagtcgccg
     8101 ccggtgaaat tgaggtcatc agcatcgatc cggttgtcac atccacccat gagtatctgg
     8161 ggcgcgagca tgtgaagcac attgcggtta acccgcaaac tgacgtgccg ctgcaactgg
     8221 cgctggcgta tacgctgtac agtgaaaacc tgtacgacaa aaacttcctc gctaactact
     8281 gtgtaggttt tgagcagttc ctgccgtatc tgctgggtga gaaagacggt cagccgaaag
     8341 atgccgcatg ggctgaaaaa ctgaccggca ttgatgccga aaccattcgt gggctggcgc
     8401 ggcagatggc ggcgaacaga acgcaaatta ttgctggctg gtgcgtgcag cgtatgcagc
     8461 acggtgaaca gtgggcgtgg atgattgtgg ttctggcggc gatgctgggg caaattggcc
     8521 tgccaggtgg tggttttggt tttggctggc actacaacgg cgcaggcacg ccggggcgta
     8581 aaggcgttat tctgagtggt ttctccggct ctacgtcgat tccgcctgtt cacgacaaca
     8641 gtgactacaa aggctacagc agcaccattc cgattgcccg ttttatcgat gcgatcctcg
     8701 aaccggggaa agtgatcaac tggaacggta aatcggtaaa actgccgcca ctgaaaatgt
     8761 gtatttttgc cggaactaac ccattccatc gccatcagca gatcaaccgc attatttaag
     8821 gctggcgcaa gctggaaacg gttatcgcca tagataacca gtggacctca acctgccgct
     8881 ttgccgatat cgtactgcct gcgaccacgc agtttgagcg taacgatctc gaccagtacg
     8941 gcaaccactc caaccgtggc attatcgcca tgaaacaggt ggtgccgccg cagttcgagg
     9001 cgcgcaacga ctttgatatt ttccgcgagc tgtgccgtcg ctttaatcgc gaagaagcct
     9061 ttaccgaagg gctggacgaa atgggctggc tgaaacgcat ctggcaggaa ggtgtacaac
     9121 aaggcaaagg acgcggcgtt catctgccag cgtttgatga cttctggaat aacaaagagt
     9181 acgtcgagtt tgaccatccg cagatgtttg ttcgccacca ggcattccgc gaagatccgg
     9241 atctcgaacc gctgggcacg ccgagtggcc tgattgagat ctactcgaaa accatcgccg
     9301 atatgaacta cgacgattgt caggggcatc cgatgtggtt tgagaaaatc gaacgctccc
     9361 acggtgggcc cggctcgcag aagtatccgt tgcatctgca atctgtgcat ccggatttcc
     9421 gacttcactc gcagttatgt gagtcggaaa ctctgcgtca gcaatatacg gtagcgggta
     9481 aagagccagt attcattaac ccgcaggatg ccagcgcgcg cggtattcgt aacggtgatg
     9541 tggtacgcgt ctttaacgct cgcggtcagg tgttggcagg ggcagtagtt tctgaccgct
     9601 atgcacccgg cgtggcacga attcacgaag gggcatggta cgatccagat aaaggcggcg
     9661 agcctggtgc gctgtgcaaa tacggtaacc ccaacgtgct gaccatcgac atcggtactt
     9721 cgcagctggc gcaggcgacc agtgcgcaca ctacgctggt ggaaattgag aagtacaatg
     9781 gagcagtgga gcaggtgacg gcgtttaacg gccctgtgga gatagtggcg cagtgcgaat
     9841 atgttcccgc gtcgcaggtg aaatcatgac cacgctgaca gcacaacaga ttgcctgtgt
     9901 ttacgcctgg ctggcgcagt tgttctcccg tgaactggac gatgaacaac tgacgcaaat
     9961 cgccagtgcg cagatggcgg aatggttttc gttgctgaaa agcgaaccgc cgctggctgc
    10021 ggcggtgaat gagctggaaa actgtattgc cacgctgaca gtacgtgacg atgcccgtct
    10081 ggaactggcc gctgactttt gcggcctgtt tttgatgact gataagcagg cggcgctgcc
    10141 gtatgcatcg gcctacaaac aggacgagca agagattaaa cgcttgttag ttgaggcagg
    10201 gatggaaacc agcggcaatt tcaacgaacc ggcagaccat ctggcgatct atctcgagtt
    10261 gttgagtcat ctgcattttt cgctgggaga ggggaccgtt cctgcgcgaa gaatcgacag
    10321 tttgcggcaa aaaacactga cggcgctgtg gcaatggtta ccagagtttg ctgcgcgttg
    10381 ccatcagtat gacagctttg gtttttacgc ggcactaagc cagttattgc tggtgttagt
    10441 ggagtgcgac caccaaaaca aataacgtcg tttatgcgcc tgaaaagacg cgtttagcgt
    10501 cgcatcaggc attatggcgc agttgccgga tgcgtcatca catccggcaa acacacatca
    10561 cggatgagct acaaaccggg aaagccgctg gcgtagcagg cggttttcct gcttcaggtg
    10621 tgcaatatca tccattaacg tcagcgccac cgcgatcccc ggccagtcca gagccagttc
    10681 atgacgcagg cgtaccgcgc gttgcaccac aatggcggca tggtcgtcaa atacccaggt
    10741 tgtttcctgg atctcacgcg gttcaaccac ccccaaaccg acaatttcat tcaactcctc
    10801 ttcagagatg ccggtatgca ggcaaaattc ggtaatagta aaagtcaccg taacattagc
    10861 catcatgctt tcccccaatc tttacgtgga tcaaaagacg actgggcgtc tgccagttgc
    10921 tgccacagcg cggcagtgtt ttcatccggt ttcggcggca tcacgatttt cagtaccgca
    10981 tacagatcgc cggtctgttt tttgctcacc agacctttgc ctttaacgcg caatcgttgc
    11041 ccggcctggc tgcctggcgg gatagtcagc aaaatgcttt ctttcagtgt tggaacggtg
    11101 actttagcac ccagcgccgc ttcccacggg ctaaccggca ccacaatttc cagatcctgg
    11161 ccgacaatat cgaacagcgg atgtggcgca atatgaatca ccagccacaa atcgccattt
    11221 ggaccaccgt tttcgcccgg cgtcccctgg cctttcagac ggatgcgttg accattgccg
    11281 acgcccgccg ggatcttcac attcagcgtt ttcgggattt cctgttcgat catgccaaag
    11341 gcgttataaa ccggcaggtt atagctgatg gtacgcttat gctcagtcag cgtttcttcg
    11401 aggaataccg ccacttcgat ttcaatatcg tggccgcgtg cggcggggcg ttgacggctc
    11461 tggcgggcat gctgaccgaa aattgacgag aagatatcgt caaaatcttc ggcattaaaa
    11521 ctctgaccgt cgccatgatg gaactgacgg ttaaattgcg gatcgttgcg atgttgccac
    11581 atctgatcat actcagcgcg acgttgttca tcacttaaca cttcccaggc ttcagcgacc
    11641 tctttgaagc gggcttcggc atccggttct ttgctgacat caggatggta tttacgggcc
    11701 agtcgacgat aggcggtctt gattgtcttg agatcgtccg tcggtttcac gcccatgatg
    11761 gcgtaataat cctttaattc catagcgtta tctcgcgtaa atcaacacaa attgaaggaa
    11821 cccctgtaag gtaactccta taagtgtagg gtaatcctca aaatttcata tgccaacaca
    11881 gaatatgtta ttgaaatcat cgtggagagg aggtcgccat caatatgggt tgctgaacat
    11941 attttaaaca ggtgaaaaag ggtgagcgat ttttgatagt tgaaccaggc actttaagtt
    12001 taactagggc gtcattattt attaaatt
//
LOCUS       DAJVUY010000128        11967 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.128, whole genome shotgun sequence.
ACCESSION   DAJVUY010000128 DAJVUY010000000
VERSION     DAJVUY010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11967
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.128"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            558..1646
                     /locus_tag="OQQ72_003124"
     CDS             558..1646
                     /locus_tag="OQQ72_003124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310954.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HCS2012769.1"
                     /translation="MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAAR
                     AFILGDSAQNISRKVVISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISG
                     DAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITR
                     TPLEVQDCLLGMLSDRVMTVPELTGEASQLYAREGFNIIATANTRDRGVNEMSAALKR
                     RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEK
                     KTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVDCIAGTIVKDNEEDRAR
                     LRRYFEQRVATHKEAHWQAYYQARHRLP"
     gene            1657..3936
                     /locus_tag="OQQ72_003125"
     CDS             1657..3936
                     /locus_tag="OQQ72_003125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012770.1"
                     /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV
                     DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDL
                     PCWAQSEEVDDSPDTQEESQALLLRATRMDNSDTLWDHLFEDESQQIALPSALAHYFA
                     QLRGDFPGDALNRQREAFMARWIAWAVQRNNGDVLVVCGGWHAPALAKMWRECPQEIN
                     KPELPSLANAVTGCYLTPYSEKHLDVLAGYLSGMPAPVWQNWCWQWGLQQAGEQLLKT
                     VLTRLRQHNLPASIADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL
                     PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE
                     LTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEEHWKLTRPLSQHAAL
                     IEAACFGATLQEAARHKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLI
                     AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCAAIDRTLWLCESNGRPDEK
                     EFHAHLHSWQALCHILRDLHSGVNLSGVSLSAAVALLERRSQAIHAPALDRGAALGAL
                     MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS
                     DANFINALPDLRAVMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH
                     QQLEQQALASLQHWGVFHV"
     gene            3929..5065
                     /locus_tag="OQQ72_003126"
     CDS             3929..5065
                     /locus_tag="OQQ72_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS2012771.1"
                     /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW
                     LYGRDPERLQRGERSGGLGGSNLTTPEWFNSIHTLFPQQVIERLESDAVLRYGIEDVV
                     TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVRQVVEEIMARLAKEVRQAFS
                     GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLV
                     LLVDQSGSMVDSVIPSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ
                     LGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL
                     AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS"
     gene            5062..7062
                     /locus_tag="OQQ72_003127"
     CDS             5062..7062
                     /locus_tag="OQQ72_003127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HCS2012772.1"
                     /translation="MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHEN
                     GALIATFSDGVRTQLANGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEE
                     EWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
                     IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEG
                     KTCRQYVQQLSQALWLSGISQPLIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDA
                     FHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKL
                     DHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSF
                     QAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALR
                     EYLRQRPPACIRPLNQVDNLFILPVAECISLGWDSGRQTLDAQVISGEGEDNLLTLSL
                     PASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAWALDAET
                     APVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAV
                     GFYRLAHVLVQFRNTESEARVEAMNNGVLLCEQLFPMLQQQG"
     gene            7187..7648
                     /locus_tag="OQQ72_003128"
     CDS             7187..7648
                     /locus_tag="OQQ72_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HCS2012773.1"
                     /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT
                     YVYKGDKVLKQSSETKIQFASISATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYA
                     QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK"
     gene            complement(7689..8159)
                     /locus_tag="OQQ72_003129"
     CDS             complement(7689..8159)
                     /locus_tag="OQQ72_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HCS2012774.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(8206..8925)
                     /gene="yehT"
                     /locus_tag="OQQ72_003130"
     CDS             complement(8206..8925)
                     /gene="yehT"
                     /locus_tag="OQQ72_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HCS2012775.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKSLKEAIGL"
     gene            complement(8922..10607)
                     /gene="btsS"
                     /locus_tag="OQQ72_003131"
     CDS             complement(8922..10607)
                     /gene="btsS"
                     /locus_tag="OQQ72_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HCS2012776.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLQLPWRDEA"
     gene            10829..10894
                     /locus_tag="OQQ72_003132"
                     /pseudo
     CDS             10829..10894
                     /locus_tag="OQQ72_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
     gene            11122..11370
                     /locus_tag="OQQ72_003133"
     CDS             11122..11370
                     /locus_tag="OQQ72_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS2012777.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(11486..11755)
                     /locus_tag="OQQ72_003134"
     CDS             complement(11486..11755)
                     /locus_tag="OQQ72_003134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2012778.1"
                     /translation="MLLQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEHIAPLQD
                     AVDLEIATEEENSLLEAWKKYRVLLNCVDTSTAPDIEWPEEPDTM"
     gene            11812..>11967
                     /locus_tag="OQQ72_003135"
     CDS             11812..>11967
                     /locus_tag="OQQ72_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCS2012779.1"
                     /translation="MVKLMKKNTDDGAKIYTPITLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHFLEH"
BASE COUNT         2943 a         3129 c         3011 g         2884 t
ORIGIN      
        1 ctgtattccc ccttagatgc gtttcaagtt gcccgttact tcaacaaatc aatcaaccgt
       61 aacagagcca ctaatagctc cagtacagca atgagcacgg ttaacttttg tgtcagcgtg
      121 tccatccgct ctccttatta aggagcgcaa caccagcacc ttacccttac actgcctgtc
      181 gatactggtt tacgtatgtt ggaccacgat gttgcactcc ggatcagggc accacctgca
      241 gcaccacccg tccggtagcc aggacttgaa atagattcga tccggcgcaa cgtcccaacg
      301 gtctggatta taaatctcat tatcttaatt gcaacggggt ccagccgtgg ttataattcg
      361 ttcgttggaa cacgatgttg cacaggctgt ggtgttaggc ctgaaagtag taaataaaag
      421 aacctgcctc accagcaggt ttttttattt actgtgatct gctttccaga tatttttcga
      481 tcaaacaact aatgcgccaa acatttattg cgcgtaaaat atcgtttatt tcattaatac
      541 atttcaggga tgaatatatg tcaccgcaga ataatcatct gcagcgtccg cctgctgctg
      601 tgttatacgc cgatgaactg gcaaaattaa aacaaaatga taacgcacct tgcccgcccg
      661 gttggcagtt aagtttgcct gcggcccgtg cttttatcct tggcgatagc gcgcaaaata
      721 ttagccgtaa agtggtgatt agtccctccg ctgtcgaacg tatgttagtc actcttgcca
      781 ccggacgcgg tttgatgttg gtgggggaac ctggcaccgc aaaatctctc ctgtctgaat
      841 tactggcaac cgctattagc ggcgatgccg ggttaaccat ccagggcggc gcatctacta
      901 ccgaagatca aatcaagtac ggctggaact acgccctgct tatcaatcat ggtccatcaa
      961 cggaagcgct ggtccctgcc ccgctttacc agggaatgcg cgacggcaaa atcgtccgtt
     1021 ttgaagagat aacgcgtaca ccgctggaag tgcaagactg tctgttaggt atgctttctg
     1081 acagggtgat gacggtgccg gaactcactg gtgaagccag tcagctctat gcgcgagaag
     1141 gctttaatat tattgccact gccaataccc gcgatcgcgg cgtcaatgaa atgagtgctg
     1201 cgctaaagcg tcgcttcgat tttgaaactg tctttccgat tatggatttc gcccaggagc
     1261 tggaactggt cgccagtgct tcggcgcgtt tgctggctca tagcggtatt ccgcataaag
     1321 tgcctgacgc ggtactggag ttactggtcc gcaccttccg cgatctgcgt gccaacggcg
     1381 aaaagaaaac gtcaatggat acactaacag cgattatgtc caccgctgaa gccgtgaacg
     1441 tggcccacgc cgtaggcgtc cgcgcctggt ttttagcgaa tcgcgcaggt gagccagccg
     1501 acctggtgga ctgcattgcc ggaaccatcg tcaaagataa cgaagaagat cgcgctcgtc
     1561 tgcgccgtta cttcgaacaa cgagtcgcca cacataaaga agctcactgg caggcttatt
     1621 atcaagcccg ccaccgcctg ccgtgaggaa agatgcatga gcgagccgtt aattgtcggc
     1681 atccggcatc atagtccggc ctgcgcccgg ctggtgaaat cgttaatcga aagccagcgg
     1741 ccacgatacg tattgattga aggcccggct gattttaatg accgggtaga cgaactgttt
     1801 ttagcccacc agcttccggt agctatttac agttattgcc agtatcagga cggtgcagcc
     1861 cccgggcgtg gtgcctggac gccatttgct gaattttcgc cggagtggca ggcgctacaa
     1921 gccgcacgtc gtattcaggc acaaacttac ttcatcgatt tgccttgctg ggcgcagagt
     1981 gaagaagtgg acgattcgcc tgatacgcaa gaggaaagcc aggccttgct gctgcgtgcc
     2041 acccgcatgg ataacagcga caccctgtgg gatcacttgt tcgaagatga aagccagcaa
     2101 attgcattac cctctgcgct ggcgcactat tttgcccaac tgcggggcga tttccccggc
     2161 gatgcactca atcgtcagcg cgaagccttt atggctcgct ggattgcatg ggcggtgcag
     2221 cgaaataatg gcgacgtgtt agtcgtctgc ggtggctggc acgctcctgc actggcaaaa
     2281 atgtggcgcg aatgtccgca ggaaattaac aagccagaat tgccctcgct ggcaaatgcc
     2341 gttacaggtt gttatctcac cccctacagt gaaaagcacc ttgatgtgct ggcaggatac
     2401 ctttccggta tgcctgcccc ggtctggcaa aactggtgct ggcagtgggg cttacagcag
     2461 gccggtgaac aactgctaaa aacggttctc acccgtttgc gccagcacaa cttgcctgct
     2521 tcgatcgcgg atatggctgc cgcacatctg catgcaatgg cactggcaca gttgcgcggt
     2581 catacactac cgttacgcac tgactggctg gatgccatag caggctcgct gattaaagaa
     2641 gccctgaatg caccgttgcc gtggagctat cgcggcgtta ttcatcccga taccgatccg
     2701 attctgctaa cgttgataga cacattagcg ggtgacggat tcggtaaact tgccccttcc
     2761 acgccacaac cgcctctgcc aaaagatgtc acctgcgaac tggaacgtac cgcaatctct
     2821 cttccggcgg agcttacctt aaatcgcttt acccccgatg ggctggcgca aagtcaggtg
     2881 ttacatcggc tggcaatact ggagatccct gggattgtac gccagcaggg aagtacactg
     2941 acacttgcag gcaacggtga agaacactgg aaattaaccc gcccgcttag ccagcatgcg
     3001 gcattgattg aggccgcatg ctttggtgca acacttcagg aagccgcacg ccataaatta
     3061 gaagccgata tgctggacgc gggtggcatc ggcagtatca ccacatgtct tagccaggcg
     3121 gcgttagcgg gtctggcgtc cttcagtcaa caattactgg agcaactcac attattaatc
     3181 gcccaggaaa atcaatttgc cgaaatgggc caggcgctgg aagtgctata tgccttatgg
     3241 cggctggatg aaattagcgg tatgcaaggc gcgcagatat tacaaacgac gttatgcgcg
     3301 gctatcgatc gcacgctgtg gctgtgtgaa tctaacggca gaccggatga aaaggagttt
     3361 cacgctcacc tgcatagctg gcaagcgctt tgccatattc tgcgcgatct acatagcggc
     3421 gttaatttat ccggcgtttc gctttctgcg gcggtagcct tactggagcg acgcagtcag
     3481 gcgattcatg ccccggcgct ggatcgcggc gcggctcttg gcgcactaat gcgtctggaa
     3541 catcccaacg ccagtgccga agcggcgctg acgatgctgg cgcagttatc cccggcacaa
     3601 tccggcgagg cgctgcacgg tttgctggca ttagcccgtc atcaactggc ctgtcaacct
     3661 gcatttatcg ccggtttcag cagccatttg aatcaactga gtgatgccaa ttttatcaat
     3721 gccctgcccg atttacgcgc ggtgatggcc tggctaccgc cacgagaacg cgggacgctg
     3781 gcgcatcagg tgcttgagca ttatcaactg gcgcaacttc ccgtttcggc actgcaaatg
     3841 ccgttgcatt gtccaccgca agccattgca catcatcaac aactcgaaca gcaggcactg
     3901 gcatcgctgc aacactgggg agttttccat gtctgaactg aacgatcttc tgaccacccg
     3961 tgagctacaa cgctggcgat taattcttgg cgaagcggca gaaacgacgc tttgtgggct
     4021 ggatgacaac gcccggcaga tagatcacgc gctggagtgg ctgtatgggc gcgatcctga
     4081 acggctccag cgtggtgaac gctctggtgg attaggtggc tcaaatctca ccactcctga
     4141 gtggttcaac agtatccaca cgctgtttcc gcaacaggtg attgagcggc tggaaagcga
     4201 tgccgtactg cgctacggca ttgaagatgt ggtgacaaat ctcgacgtgc tggaacgtat
     4261 gcagccttcc gaaagcctgc tacgcgccgt tttgcacacc aaacatctga tgaaccccga
     4321 agtactggct gccgcccgca ggattgtgcg ccaggttgtt gaagaaatta tggcgcgact
     4381 ggcaaaggaa gttcgtcagg ctttttctgg tgtccgcgat cgccgtcgcc gctcatttat
     4441 tccactggcg cgaaactttg atttcaaaag tactctgcgc gccaacctgc aacactggca
     4501 cccgcaacac ggcaagttgt atatcgaatc cccccgcttt aacagccgca ttaaacgcca
     4561 aagcgaacaa tggcaactgg tcttactggt tgatcaaagc ggctcgatgg tcgattcggt
     4621 gatcccctct gcggtgatgg cggcctgttt gtggcagtta cccggcattc gtacccatct
     4681 ggtggcgttt gacacaagcg tcgttgatct cacggcagac gttgccgatc cggtagagtt
     4741 attaatgaaa gtacagttgg gcggcgggac caatatcgcc agtgccgtgg agtatggtcg
     4801 gcaacttatt gaacaaccag cgaaaagcgt cattatcctc gtgagcgatt tttacgaagg
     4861 gggttcatca tcattactga cgcatcaggt gaaaaagtgt gtccagagcg gcatcaaagt
     4921 gctgggactg gcagcgctcg atagcacagc aacaccttgc tatgaccgcg atacggccca
     4981 ggcgctggtt aatgtcggcg cacaaatagc cgccatgaca ccgggcgagc tggcatcatg
     5041 gcttgcggag aatcttcagt catgaattca ctacgtccgg aattattaga actgacaccg
     5101 caggccctga cggcgttaag caatgccggt tttgttaagc gcagtcttaa ggaactggaa
     5161 aatggcaacg tcccggagat cagccatgag aacggcgctt taatcgccac cttcagtgac
     5221 ggtgtccgta cccagctggc gaacggccag gcactgaaag aggctcagtg cagctgcggg
     5281 gccagcggta tgtgccgtca tcgcgtgatg ctggtgttaa gttatcaacg actttgtgct
     5341 accgcccagc ctacgggaaa agaagaggaa tgggatccgg caatctggct ggaagaactg
     5401 gctacccttc ccgatgccac ccgcaaacgc gcacaggcgc tggtcgctaa aggcatcacc
     5461 attgagttgt tctgtgcgcc gggtgaaatt ccctctgccc gcttaccgat gagcgatgtg
     5521 cgtttttatt cccgcagcag tattcgtttc gcccgttgtg attgtattga aggcacactt
     5581 tgcgaacatg tcgtactggc agtacaggcc tttgtccagg caaaagcgca gcaagcggaa
     5641 ttgactcatt taatctggca gatgcgcagc gaacacgtca catcatctga cgatccgttt
     5701 gccagcgaag aaggcaaaac gtgtcgtcaa tatgttcaac aactaagcca ggcattatgg
     5761 ctgagcggca tcagccagcc gcttattcac tacgaggccg ctttcagccg cgcgcagcaa
     5821 gcagcggaac gctgcagctg gcgatgggtg agtgaatcgc tacggcaact gcgcgccagc
     5881 gttgatgcct tccacgcccg cgccagccac tatcatgccg gagaatgctt acgtcagctt
     5941 gcggcattaa acagtcgatt aaactgcgca caagagatgg cccggcgcga cagtgttggt
     6001 gaagttcctc ctgtgccgtg gcgcacggtc gttggctctg gcattgccgg agaagcaaag
     6061 cttgatcatc tgcggctggt gtctttaggt atgcgttgct ggcaggatat tgagcattat
     6121 ggtttacgca tctggtttac cgatcccgac accggcagta ttttgcatct ttcgcgtagt
     6181 tggccgcgaa gtgaacagga aaactcaccg gcagctacgc gtcggctgtt tagttttcag
     6241 gctggcgcac tggcgggtgg gcaaattgtt tcacaagcag caaaacgcag tgccgatggc
     6301 gagctgctgt tagctacccg caaccgctta agcagcgttg tgccgctgtc gccagacgcc
     6361 tggcaaatgt tgagcgcgcc gttacgccag ccgggcattg tggctttgcg ggaatattta
     6421 cgccagcgtc cccccgcctg catacggcct cttaatcagg tggataactt atttattctg
     6481 ccggtcgctg agtgtatttc actcggttgg gacagcggcc gccagacgct ggatgcgcag
     6541 gtaatcagcg gcgaaggtga agataatctg ctgacgttat cccttccggc atctgcctgt
     6601 tctccttttg ccgttgaacg catggcggcg cttttgcaac aaacagacga ccccgtgagt
     6661 ctggtttctg gctttgtcag ctttgtagag gggcaattga cactggaacc acgggtgatg
     6721 atgacaaaaa cccgtgcctg ggcgctggac gcggaaactg cgcctgtggc accgctacct
     6781 tctgccagcg ttttgcctgt gccgtctacc gctcatcagt tgctgatgcg ctgccaggcg
     6841 ttacttattc aactgctcca taacggctgg cgctatcagg aacagagcgc tattagtcag
     6901 gcagagttgc tggcgaatga cctcaccgcg gtgggttttt atcggctggc acatgtgttg
     6961 gtacaatttc gtaatacaga aagcgaggca cgggtagaag caatgaataa cggtgttttg
     7021 ctttgcgaac aattattccc catgcttcag caacaaggat gaaatagtgc tttttactaa
     7081 gagttctact ccagttccgg actgctcacg ccacggtatt aggcatatcc tatatagccc
     7141 ctggtgagag tcaccagttt cttgattaaa taaaatggag ttttacatga aggctttcaa
     7201 taagctgttt tccctcgttg ttgcatctgt tctggttttc tctcttgctg gctgcggtga
     7261 caaagaagaa tcgaagaaat tcagcgccaa tctgaacggc actgaaattg ccattaccta
     7321 tgtctacaaa ggtgacaagg tgcttaagca atcttctgaa accaaaattc aatttgcctc
     7381 cattagtgca accaccaaag aagatgctgc caagacactt gagccgttaa gcgccaaata
     7441 caaaaacatc gcgggtgttg aagaaaaatt aacctatacc gatacctacg cgcaggaaaa
     7501 cgtgactatc gatatggaaa aagtggattt taaagccctg cagggtattt caggaatcaa
     7561 cgtttctgct gaagatgcca aaaaaggtat cactatggcg caaatggaac tggtgatgaa
     7621 agccgctggt tttaaagaag tgaaataatc tgtcggcggc catgtttcgt atggccgcca
     7681 tacccgtctt agcttttctt cacatgctgg cgcgctgcca gtccacgcag aaaataacgt
     7741 aaaaattgat cgccgcattc gcggaagttt ttatgatccg gtgcgcgcat catcgctgta
     7801 atttccggca tcgaaacgcg gaactgctgt tcggtgagga tagccagaat gtcatcggtt
     7861 ttcagcgaaa acgcgatgcg taattttttc agcacgatgt tgttattaat gcgacgttcc
     7921 ggctccagtg ccggagcaga ctcatccttg ccgcgttttt cataaatcag gccattgagg
     7981 aatgacgaca aaacaatgtc cggacaacgc tgaaaaccct cttcgtcttc tttacgtagc
     8041 cagacggcga tctgttccgc ggtggcttcg acattaccca gcgccagaat acgcaccagg
     8101 tcattattat tggctttcaa aatgtagcgc acgctgcgca gaatatcgtt acttagcatg
     8161 aggccttcag gtgttgatga ggcaaaaagc cattttagca gtcttttaca ggccaatcgc
     8221 ctcttttaag cttttcagat aacggcggct gaccggcacg gttaagccat tacgcaaaat
     8281 caactcggcc tggccgttat cttccagacg aatctcctgt aaatgcgcga ggttaaccag
     8341 atactgacga tggcagcgca gtagtggtgt acgactttcc agggtacgta atgtcaattc
     8401 ggtaaagccc tctttccctt cgtggctggt aacgtagaca ccgctcatcc gactgctgac
     8461 aaatgccaca tctttcattt gcagcaaata aatccgacta tgccccgtac aagggataaa
     8521 tttcagcgcc tgttgatttt ccggtaacag cgaaacatcc tgcttgctgc gctcctgacg
     8581 caatcgcgcc agcgttttct ccagtcgcgc ttcatcaatt ggcttcagca gataatcaaa
     8641 ggcatgttct tcaaaggctt taatagcgta ttcgtcaaac gcagtgagaa aaacaatata
     8701 cgggcgatgt tccgggtcaa gcatccccac catttccaga ccactgatgc gcggcatctg
     8761 gatatcgaga aacagcacat ccgggcgcag tttatgcacc gcgccgatcc cttccacggc
     8821 gtttgaacac tctccaacga tttcaatatc gctctgctcc tgcaaaaata cacgcaggtt
     8881 ctcccgtgct aacggttcat catcgacaat taagacttta atcatgcctc gtccctccat
     8941 ggtagttgta acgttattcg ggtgtaacta tcaggctcac aggcgacgct tattccatag
     9001 tcatcgccaa accgttcacg taaacgctta tccaccagat tcatccccag cccactggca
     9061 ttggttaccg gttgatacaa accggcattg tcttcgatct ccagcatcaa atgttgcccc
     9121 tcacgtcggg cgctgattgc cactcgccct gtatccagca gttgtgatgt cccatgttta
     9181 atggcgtttt ccactatcgg ttgcagggta aacgcgggca attgctgctg ggataattct
     9241 tgcggaatag caatgttgac ctgcaaccgc gactggaagc gcgccttttc aatttgcaga
     9301 taagcgttca catgttcaat ttcgtcggcg agagtaacaa actccgaagg ccgctttaag
     9361 tttttgcgga aaaaagtgga aagatactgc accagctggc tggcctgttc gctgtcgcgg
     9421 cggatcaccg ctttaatggt gttaagcgca ttaaacaaaa aatgaggatt cacctgggcg
     9481 tgaagcagtt tgatttctga ctgggtgagc atcgcttttt gccgctcata ttgcccggca
     9541 agaatctgcg ccgaaagcag ttgcgcaatc ccctcgccca gcgtgcggtt tattgaactg
     9601 aataaacggt ttttggcttc atacaatttg atggtgccca tcacccgctg attttcacca
     9661 cgcaacggaa ttaccagcgt cgaccccagt ttgcattgcg gatgcaaaga gcaacgataa
     9721 ggtacttcgt tgccatcagc gtagaccact tcaccggttt caatcgcttt taaggtgtaa
     9781 gtcgaagaaa tcggtttgcc gggtaaatgg tggtcgtcac caattccagt aaaggccagc
     9841 aatttctctc gatcggtaat cgcgactgca ccaatatcca gctcctgata cagcacctgt
     9901 gccactttca tgctgttcac ttcgttaaac ccctggcgca aaatgccttc cgtcgaggca
     9961 gccactttca gcgcagtggc agaaaaagcc gaagtgtatt tttcaaacat cgcgcgttta
    10021 tcgagcaata tacgcataaa cagcgccgcg ccgacggtat tggtgaccat cattggtgca
    10081 gcaatattac tcaccagacg caccgcatct tcataaggtc gggcgatcgc caggatgatc
    10141 aacatttgca ccatttcagc gacgaacgtg acggcaccgg cggtaatggg gttaaagact
    10201 ttatcagtac gcccgcgacg aatcaggatg ctgtgtacca ggccgccgag caatccttca
    10261 acgatggtcg agatcatgca acttagcgcg gtcatgcccc ccatcgaata tcgatgtaac
    10321 ccgccggtca ggccaaccag cccaccgacg accggaccgc cgagtaagcc gcccattacc
    10381 gcgcctatcg cacgggtatt ggcaatagaa tcgtcaatgt gcaacccaaa ccaggtgccc
    10441 atgatgcaga agatggaaaa gacgatgtag cagagaaatt tatgcggcag acgaaccgtg
    10501 acctgcatta acggtatgaa taatggcgtt ttactcatta accacgcaat gactaaaaaa
    10561 acgcacatct gctgaagcag cagcaacacc agattaaaat cgtacatacc cgcaaaccac
    10621 acttcccttt aaaacgcgta acatacattg cctgcgttta actttctttg aactcttgca
    10681 gaaaaatgag aattcgtgag tacgatcact caaaatcgcc tggcaaaaat aaaatcaccc
    10741 tatagatgca caaaaaacgg gcaaaactac ctggttcgca aaactgcgtc taaagttaaa
    10801 ccgggacctc gcgagcaagg gtgagacgat ggcgctttac acaattggtg aagtggcgtt
    10861 gctttgtgat attaaccctg tcacgttacg cgcgtgacgc aacattttaa aaaatcgacg
    10921 aagatcgtcc aggagcgccg tttttcaagg gttggataga tgattcgttt accatgtcga
    10981 cgaacttcga cgaatttcgc cgataaaaag tgtcccatac atgccccatt gatgccccat
    11041 aaacaatatc agaaattgat actggttatc catacagata aaaataacac ctgtacataa
    11101 ctacagttac aagagggtgt tatgcgtgtt gagatctgta tcgctaaaga aaaaatcact
    11161 aaaatgccaa acggtgctgt ggatgcgtta aaggaagaat taacccgacg catcagtaaa
    11221 cgttatgacg atgtagaggt gatcgtaaaa gccaccagca acgatggcct ttctgttaca
    11281 cgcaccgcag ataaggattc tgcaaaaaca tttgttcagg agactctgaa agatacctgg
    11341 gagtctgctg acgagtggtt tgttcactaa taaacacgta aaatcggtaa cggctggaaa
    11401 tcattcaata ctcgcactat cgaaagttta ccagccaacc gcagcacgtc ctgcatacgt
    11461 cgtgtctgcg gtttttcttt ttcgcttaca ttgtgtctgg ttcttccggc cactcaatat
    11521 caggtgcagt tgatgtatca acacagttca gcaacacccg atacttcttc caggcttcca
    11581 gcaacgagtt ttcttcctcc gttgcgatct ccagatctac agcatcctga agtggcgcaa
    11641 tatgctcact gaattcctgg atgtagaact gtgtggtgac ggtcttccag ccattcggct
    11701 cctgctgtat cgaagcatac caggctattt caatatcgct atgctgcagc agcatttaac
    11761 cccttgtaat tcatcgccat aattgattta attcacaaat aaaactataa tatggtgaaa
    11821 ttaatgaaaa aaaacacaga tgatggggct aaaatttaca caccaattac cctaaagctt
    11881 tatgactggt gggttttggg agtatcaaat cggcttgcat ggggatgtcc tacaaaggaa
    11941 caccttcttc cacactttct ggaacat
//
LOCUS       DAJVUY010000129        11925 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.129, whole genome shotgun sequence.
ACCESSION   DAJVUY010000129 DAJVUY010000000
VERSION     DAJVUY010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11925
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.129"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            216..1325
                     /gene="livK"
                     /locus_tag="OQQ72_003136"
     CDS             216..1325
                     /gene="livK"
                     /locus_tag="OQQ72_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HCS2012780.1"
                     /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID
                     FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD
                     QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA
                     NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK"
     gene            1373..2299
                     /gene="livH"
                     /locus_tag="OQQ72_003137"
     CDS             1373..2299
                     /gene="livH"
                     /locus_tag="OQQ72_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HCS2012781.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            2296..3573
                     /gene="livM"
                     /locus_tag="OQQ72_003138"
     CDS             2296..3573
                     /gene="livM"
                     /locus_tag="OQQ72_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     permease LivM"
                     /protein_id="HCS2012782.1"
                     /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR
                     WQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVA
                     WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA"
     gene            3570..4337
                     /gene="livG"
                     /locus_tag="OQQ72_003139"
     CDS             3570..4337
                     /gene="livG"
                     /locus_tag="OQQ72_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HCS2012783.1"
                     /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA"
     gene            4339..5052
                     /gene="livF"
                     /locus_tag="OQQ72_003140"
     CDS             4339..5052
                     /gene="livF"
                     /locus_tag="OQQ72_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HCS2012784.1"
                     /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGK
                     TTLLGTLCGDPRAASGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            5449..6120
                     /locus_tag="OQQ72_003141"
     CDS             5449..6120
                     /locus_tag="OQQ72_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000803216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HCS2012785.1"
                     /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL
                     AQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENRHLPGDRRRHVRRAGSGH
                     HDADL"
     gene            6050..6253
                     /locus_tag="OQQ72_003142"
                     /pseudo
     CDS             6050..6253
                     /locus_tag="OQQ72_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="with UgpEC is involved in the uptake of
                     glycerol-3-phosphate; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter permease"
     gene            6250..7095
                     /gene="ugpE"
                     /locus_tag="OQQ72_003143"
     CDS             6250..7095
                     /gene="ugpE"
                     /locus_tag="OQQ72_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HCS2012786.1"
                     /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA
                     PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATTTF
                     LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL
                     VDSEK"
     gene            7097..8167
                     /gene="ugpC"
                     /locus_tag="OQQ72_003144"
     CDS             7097..8167
                     /gene="ugpC"
                     /locus_tag="OQQ72_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol 3-phosphate ABC transporter ATP
                     binding protein UgpC"
                     /protein_id="HCS2012787.1"
                     /translation="MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKS
                     TLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK
                     IRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDE
                     PLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGT
                     PVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKM
                     TLGIRPEHIVLSSQAEGGVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGS
                     TLWLHLAENQLHLFDGETGQRV"
     gene            8164..8907
                     /gene="ugpQ"
                     /locus_tag="OQQ72_003145"
     CDS             8164..8907
                     /gene="ugpQ"
                     /locus_tag="OQQ72_003145"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS2012788.1"
                     /translation="MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVVGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE
                     RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQLAA
                     PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP
                     QRAAELLRWGVDCICTDAIDVIGPNFTAQ"
     gene            complement(8894..9334)
                     /locus_tag="OQQ72_003146"
     CDS             complement(8894..9334)
                     /locus_tag="OQQ72_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HCS2012789.1"
                     /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ
                     TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG
                     MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP"
     gene            9454..11187
                     /gene="ggt"
                     /locus_tag="OQQ72_003147"
     CDS             9454..11187
                     /gene="ggt"
                     /locus_tag="OQQ72_003147"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCS2012790.1"
                     /translation="MIKPTFLRRVAIAALLSGSCFSAVAAPPVSYGVEEDIFHPVRAK
                     QGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKN
                     GNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGT
                     MPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDK
                     LVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPIS
                     GDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADR
                     SEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAQPSSEIRPGKLAPYESNQTTHYS
                     VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANA
                     VGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEATNA
                     PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGASD
                     PRSVDDLTAGY"
     gene            complement(11225..11509)
                     /locus_tag="OQQ72_003148"
                     /pseudo
     CDS             complement(11225..11509)
                     /locus_tag="OQQ72_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417903.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YrhB family protein"
     gene            complement(11709..11864)
                     /locus_tag="OQQ72_003149"
     CDS             complement(11709..11864)
                     /locus_tag="OQQ72_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012791.1"
                     /translation="MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDMLIYLEFYP
                     NHKILIS"
BASE COUNT         2707 a         2955 c         3387 g         2876 t
ORIGIN      
        1 aaaggcactt ttttctgttt atctatcaat aaattcagaa tattatctgt tcttaatcga
       61 ctgaaagata gggattttaa tcactattat cacaaaatac tgcgctaaac ccttaatcag
      121 acaggcaaaa acagtgcagt ataaaaaaag aacagtctga tttgttaaca cataaaaaca
      181 aagcaacaca acatcacgaa tggggatttt tgactatgaa acggaatgcg aaaactatca
      241 tcgcagggat gattgcactg gcaatttcac acaccgctat ggctgacgat attaaagtcg
      301 ccgttgtcgg cgcgatgtcc ggcccgattg cccagtgggg cgatatggaa tttaacggcg
      361 cgcgtcaggc gattaaagac attaatgcca aagggggaat taagggcgac aagctggttg
      421 gcgtggaata tgacgacgcc tgcgacccga aacaagccgt tgcggtcgcc aacaaaatcg
      481 ttaatgacgg cattaaatac gttattggtc atctgtgttc ttcttctacc caacctgcat
      541 cagatatcta cgaagacgaa ggtattctga tgatctcacc gggagcgacc aacccggagc
      601 tgacccaacg cggttatcaa cacattatgc gtactgccgg gctggactct tcccaggggc
      661 caacggcggc aaaatacatt cttgagacgg tgaagcccca gcgcatcgcc atcattcacg
      721 acaaacaaca gtatggcgaa gggctggcgc gttcggtgca ggacgggctg aaagcggcta
      781 acgccaacgt cgtcttcttc gacggtatta ccgccgggga gaaagatttc tccgcgctga
      841 tcgcccgcct gaaaaaagaa aacatcgact tcgtttacta cggcggttac tacccggaaa
      901 tggggcagat gctgcgccag gcccgttccg ttggcctgaa aactcagttt atggggccgg
      961 aaggtgtggg taacgcatca ttgtcgaata ttgccggtga tgctgccgaa ggcatgttgg
     1021 tcactatgcc aaaacgctat gaccaggatc cggcaaacca gggcatcgtt gatgcgctga
     1081 aagcagacaa gaaagatccg tccgggcctt atgtctggat cacctacgcg gcggtgcaat
     1141 ctctggcgac tgcccttgag cgtactggca gcgatgagcc gctggcgctg gtgaaagatt
     1201 taaaagctaa cggtgcaaac accgtgattg ggccgctgaa ctgggatgaa aaaggcgatc
     1261 ttaagggatt tgattttggt gtcttccagt ggcacgccga cggttcatcc acggcagcca
     1321 agtgatcatc ccaccgcccg taaaatgcgg gcgggtttag aaaggttacc ttatgtctga
     1381 gcagtttttg tatttcttgc agcagatgtt taacggcgtc acgctgggca gtacctacgc
     1441 gctgatagcc atcggctaca ccatggttta cggcattatc ggcatgatca acttcgccca
     1501 cggcgaggtt tatatgattg gcagctacgt ctcatttatg atcatcgccg cgctgatgat
     1561 gatgggcatt gataccggct ggctgctggt ggcggcggga ttcgtcggcg caatcgtcat
     1621 tgccagcgcc tacggctgga gtatcgaacg ggtagcctat cgcccggtgc gtaactctaa
     1681 gcgcctgatt gcgctcatct cggcaatcgg catgtccatc ttcctgcaaa actacgttag
     1741 cctgactgaa ggttcgcgtg acgtggcgct gcccagtctg tttaacggtc agtgggtggt
     1801 ggggcatagc gaaaacttct ctgcctctat taccaccatg caggcagtga tctggattgt
     1861 tactttcctc gccatgctgg cgctgacgat tttcattcgt tattcccgta tggggcgcgc
     1921 ctgccgtgcc tgcgcggaag atctgaaaat ggcgagcctg cttggcatca acaccgaccg
     1981 ggtgattgct ttgacctttg ttattggcgc ggcgatggcg gcagtggctg gcgtactgct
     2041 cggtcagttc tacggcgtca ttaaccccta tatcggcttt atggccggga tgaaagcctt
     2101 taccgctgcg gtgctcggtg ggattggcag cattccaggg gcgatgattg gtgggctgat
     2161 cctggggatt gcggaggcgc tctcttctgc ctatctgagt acggaatata aggatgtggt
     2221 ttcatttgcc ctgctgattc tggtgctgct ggtgatgccg accggtattc tgggtcgccc
     2281 ggaggtagag aaagtatgaa accgatgcat attgcaatgg cgctgctctc tgccgcgatg
     2341 ttttttgtcc tggcgggcgt ctttatgggc gtgcaactgg agctggatgg caccaaactg
     2401 gtggtcgaca cggcttcaga catccgttgg cagtgggtgt ttatcggcac ggcggtggtc
     2461 tttttcttcc agcttttgcg accggctttc cagaaagggc taaaaagcgt ttccggaccg
     2521 aagtttattc tgcccgcgat tgatggctcc acggtgaagc agaaactgtt cctcgtggcg
     2581 ctgttggtgc ttgcggtggc gtggccgttt atggtgtcac gtgggacggt ggatatcgcc
     2641 actctgacca tgatctacat tatcctcggt ctcgggctga atgtggttgt tggtctttct
     2701 ggtctgctgg tgctggggta cggcggtttt tacgccatcg gcgcttacac ctttgcgctg
     2761 ctcaatcact attacggctt gggcttctgg acttgtctgc cgattgccgg gttaatggca
     2821 gcggcggcgg gcttcctgct cggctttccg gtgctgcgtc tgcgcggtga ttatctggcg
     2881 atcgttaccc tcggcttcgg cgaaattgtg cgcatattgc tgctcaataa caccgaaatt
     2941 accggcggcc cgaacggaat cagtcagatc ccgaaaccga ctttcttcgg ccttgagttc
     3001 agccgtaccg cccgtgaagg cggttgggac acgttcagta atttctttgg cctgaaatac
     3061 gatccctccg atcgcgtcat cttcctgtat ctggtggcgt tgctgctggt ggtgctaagc
     3121 ctgtttgtca ttaaccgcct gctgcggatg ccgctggggc gtgcgtggga agcgttgcgt
     3181 gaagatgaga tcgcctgccg ttcgctgggc ttaagcccgc gtcgtatcaa gctgaccgct
     3241 tttaccatca gtgccgcgtt tgccggtttt gccggaacgc tgtttgctgc gcgccagggc
     3301 tttgtcagcc cggaatcctt cacctttgct gaatcggcgt ttgtactggc gatagtggtg
     3361 ctcggcggta tgggatcgca gtttgcggtg attctggcgg caattttgct ggtggtgtcg
     3421 cgcgagttga tgcgtgattt caacgaatac agcatgttaa tgctcggtgg tttgatggtg
     3481 ctgatgatga tctggcgtcc gcagggcttg ctgcccatga cgcgcccgca actgaagctg
     3541 aaaaacggcg cagcgaaagg agagcaggca tgagtcagcc attattatct gtgaacggcc
     3601 tgatgatgcg cttcggcggc ctgctggcgg tgaacaacgt caatcttgaa ctgtacccgc
     3661 aggagatcgt ctcgttaatc ggtcctaacg gtgccggaaa aaccacggtc tttaactgcc
     3721 tgaccggatt ctacaaaccc actggaggca ccattttact gcgcgatcag catctggaag
     3781 gtttaccggg gcagcaaatt gcccgcatgg gcgtggtgcg taccttccag catgtgcgtc
     3841 tgttccgtga aatgacggtg attgaaaacc tgctggtggc gcagcatcag caactgaaaa
     3901 ccgggctgtt ctctggcctg ttgaaaacgc catccttccg tcgcgcccag agcgaagcgc
     3961 tcgatcgcgc cgcgacctgg cttgagcgca ttggtttgct ggaacacgcc aaccgtcagg
     4021 cgagtaacct ggcctatggt gaccagcgcc gtcttgagat tgcccgctgc atggtgacgc
     4081 agccggagat tttaatgctc gacgaacctg cggcaggtct taacccgaaa gagacgaaag
     4141 agctggatga gctgattgcc gaactgcgca atcatcacaa caccactatc ttgttgattg
     4201 aacacgatat gaagctggtg atgggaattt cggaccgaat ttacgtggtc aatcagggga
     4261 cgccactggc aaacggtacg ccggagcaaa tccgtaataa cccggacgtg atccgtgcct
     4321 atttaggtga ggcataagat ggaaaaagtc atgttgtcct ttgacaaagt cagcgcccac
     4381 tacggcaaaa tccaggcact gcatgaggtg agcctgcata tcaatcaggg cgagattgtc
     4441 acgctgattg gcgcgaacgg ggcggggaaa accaccttgc tcggcacgtt atgcggcgat
     4501 ccgcgcgccg ccagcgggcg aattgtgttt gatgataaag acattaccga ctggcagacg
     4561 gcgaaaatca tgcgcgaagc ggtagcgatt gtcccggaag ggcgtcgcgt cttctcgcgg
     4621 atgacggtgg aagagaacct ggcgatgggc ggcttttttg ccgaacgcga ccagttccag
     4681 gagcgcataa agtgggtgta tgaactgttt ccacgtctgc atgagcgccg tgttcagcgg
     4741 gcaggcacca tgtccggcgg tgagcaacaa atgctggcga ttggtcgcgc gctgatgagc
     4801 aacccgcgtt tgctgctact tgatgagcca tcgctcggtc ttgcgccgat tatcatccag
     4861 caaattttcg acaccatcga gcagctgcgc gagcagggga tgactatctt cctcgtcgag
     4921 cagaacgcca accaggcgct aaagctggcg gatcgcggct acgtgctgga aaacggccat
     4981 gtggtgctct ccgataccgg cgatgcgctg ctggcgaacg aagcagtgag aagtgcgtat
     5041 ttaggcgggt aataacacgt tgattgataa ggagtcaaaa gactcctttg agacaggtga
     5101 caaatgtaaa attgcctgat gcgctgcgct tatcaggcct actgggtgag ttgcaatata
     5161 ttgaatttgc acgatcttgt aggccggata aggcgtttac gccgcatccg gcatgaaacg
     5221 atgagtaatc tgtagagttt gattcagacc ttctattttt ccgcttatcc gtgccccatc
     5281 tcccattttc cctcacccac gccgtcaccg ccttgtcatc tttctgacac cttactatct
     5341 tacaaatgta acaaaaaagt tatttttctg taattcgagc atgtcatgtt accccgcgag
     5401 cataaaacgc gtgaattcgc gcattcggta caacaagaga gataaacgat gaaaccgtta
     5461 cattatacag cttcagcact ggcgctcgga ctggcgttaa tggggaatgc acaggcagtg
     5521 acgaccattc cgttctggca ttctatggaa ggggaactgg gtaaagaggt ggattctctg
     5581 gcccaacgtt ttaacgccga aaatccggat tacaaaattg taccgaccta taaaggcaac
     5641 tacgaacaga atttaagcgc ggggattgcc gcatttcgta ccggcaacgc tccggctatt
     5701 ttgcaggttt atgaagttgg caccgccacc atgatggcat cgaaagccat taaaccggta
     5761 tatgacgtgt ttaaagaggc ggggattcaa ttcgatgagt cgcagtttgt gccgacggtt
     5821 tccggttact actccgacag caaaacgggc cacttactct cccagccatt caacagctcg
     5881 actcccgttc tctattacaa caaagacgcc ttcaagaaag cggggttaga cccggaacag
     5941 ccgccgaaaa cctggcagga tctggcggac tatgccgcga aactgaaagc ctccggcatg
     6001 aagtgcggct acgccagcgg ctggcagggc tggatccaac tggaaaatcg acaccttccc
     6061 ggtgatcgac gccgccacgt ccggcgggcc ggttcaggcc accacgacgc tgatttataa
     6121 gatctaccgc gaaggtttta ccggactgga tctggcttcg tctgccgcac agtcggtggt
     6181 gttgatgttc ctcgtcatcg tgctgacggt ggtgcagttc cgctatgttg aaagcaaggt
     6241 gcgttaccaa tgattgagaa ccgtccgtgg ctgacgatat tcagccatac catgctgatc
     6301 ctcgggatcg cggtgattct cttcccgctg tacgtggcgt ttgtcgcggc gacgctggat
     6361 aaacaggccg tctatgccgc gccgatgacg ctcatccccg gcacacatct gctggaaaat
     6421 atccacaaca tctgggttaa cggggtaggt acgaatagcg cgccgttctg gcggatgttg
     6481 cttaacagct ttgtgatggc gttcagcatt acgctcggca aaattaccgt ctcgatgctc
     6541 tcggcatttg ccattgtctg gtttcgtttt ccgctacgta acctcttctt ctggatgatt
     6601 tttatcaccc tgatgctgcc ggttgaagta cgtatcttcc cgacggtgga agtcatcgcc
     6661 aacctgaaga tgctcgacag ctacgccggt ttaacgctgc cgctgatggc ctcggcgacc
     6721 accacgtttc tgtttcgcca gttctttatg acgctgccgg atgaactggt ggaagcggcg
     6781 cggatcgacg gcgcatcgcc aatgcgcttc ttttgcgaca tcgtttttcc gctctccaaa
     6841 actaatctgg cggcgctgtt tgtgatcacc tttatttacg gctggaacca gtatttgtgg
     6901 ccgttgttga ttattaccga cgtggatctc ggcaccaccg tggcagggat caaagggatg
     6961 atcgccactg gcgaaggcac cacggaatgg aactcagtga tggcggcgat gttgttaacc
     7021 ctgatcccac cagtagtgat tgttttagtg atgcagcgtg ccttcgtgcg cggcctggtc
     7081 gatagtgaga aataagatgg caggactgaa attacaggca gtaaccaaaa gctgggatgg
     7141 caaaacccag gtcattaaac cgctgaccct tgatgtggct gatggcgaat ttatcgtgat
     7201 ggtcgggccg tctggctgcg ggaaatcgac gctgctgcgt atggttgccg ggctggagcg
     7261 ggtgaccgaa ggcgatatct ggatcaacga ccagcgcgtg actgaaatgg agccgaaaga
     7321 tcgcgggatt gcgatggtgt tccagaacta cgcgctttat ccgcatatga gcgtcgaaga
     7381 aaacatggcg tgggggctta aaattcgcgg catgggcaag cagcaaattg ccgagcgcgt
     7441 taaagaagcg gcgcgcattc tggagctgga cggtctgctc aaacgtcgcc cgcgtgagct
     7501 atccggcggt cagcgtcagc gtgtagcgat gggccgcgcg attgtgcgcg atccggcggt
     7561 gttcctgttt gatgagccgc tctctaacct cgatgccaag ctgcgcgtgc agatgcgtct
     7621 tgaactgcaa cagttgcacc gtcgcctgaa aacgacttca ctctacgtta ctcacgatca
     7681 ggttgaagcg atgacgctcg cccagcgagt aatggtgatg aacggcggcg ttgccgaaca
     7741 gattggcaca ccagttgaag tctacgaaaa gcccgccagc ctgtttgtag cgagttttat
     7801 cggcagtccg gcgatgaacc tgctgacagg ccgcgtgaat aacgaaggca cgcatttcga
     7861 actggacggc ggtattgagc tgccgctaaa cggtggctac cgtcagtatg ccgggcgtaa
     7921 aatgactctc ggcattcgcc cggaacatat tgtgctaagc tcgcaggcag aaggcggcgt
     7981 accgctggtg atggacacgc tggagatcct cggcgcagat aacctggcgc acggacgctg
     8041 gggcgagcag aagctggtgg tgcgactggc gcatcaggag cgcccgacgg caggcagcac
     8101 gctgtggctg catctggcgg aaaatcagct gcatcttttt gatggtgaaa caggacaacg
     8161 agtatgagta actggcctta tccccgcatc gtcgctcatc gtggcggcgg taagctggcc
     8221 ccggaaaaca ccctggcggc aatcgacgtc ggggcaaaat acggtcataa gatgatcgaa
     8281 tttgacgcga agttatcgaa agatggcgag atcttcctgc tccatgacga caatctcgaa
     8341 cgcaccagca acggctgggg cgtcgtgggt gaactgaact ggcaggattt actgcgcgtg
     8401 gatgcgggca gttggtacag caaagcgttt aaaggtgagc cgctgccgtt gctttcgcag
     8461 gtggcggaac gctgtcgcga acatgggatg atggcgaata tcgaaatcaa acccaccact
     8521 ggcactggac cattaacggg caaaatggtg gcgctggcgg cacgccaact gtgggccggt
     8581 atgacgccgc cgctgctgtc atcgtttgag attgatgctt tagaagctgc acagctggcg
     8641 gcaccggaac tgccgcgtgg tttattgctt gatgagtggc gcgacgactg gcgcgaactg
     8701 accgcgcggc tgggctgcgt ctctattcat ctcaatcata agttactcga taaagcgcga
     8761 gtgatgcagt tgaaagacgc cggattacgg attctggttt ataccgtcaa taaaccccag
     8821 cgcgcggcag agttgctgcg ctggggcgtg gattgcatct gtaccgatgc gattgacgtg
     8881 attggtccga actttacggc ccaatagttt tcaacggaat gtcaggctgc ggcgtgctgg
     8941 gctgattcag catgtcgccg tttctcctct ccggcagcat atgctgctga ttcaacgaac
     9001 tatccggatt acggttgctg tttaacatcc cgccgttggt gttgggcagc atttgctgcc
     9061 gggcgggatt tcgctccccc ggctgtgact gcaacacccg ctgagaatta ttgtttatct
     9121 ggttttctaa atgctgctgt tgcaactgag tttgcgtttt cagttgctga ttcagcatcc
     9181 ctttttgctg gatttgctga gtttgcatct gggtttgcat ccgctgctgg ctgggtatct
     9241 gataccccgg ctggttaggg ttgttcagag tattaatggg ctgtgcaaag ccgacaaacg
     9301 gcaggagtgc cgtaagaatc agaagtcgtt tcatcgcgta tcctcctctg aagatatcct
     9361 ttaagtttac tcgcttcccg acaaaacgat gattaattca gagttatata ccaggcttag
     9421 ctggggttgc cccttaatct ctggagaata acgatgataa aaccgacgtt tttacgccgg
     9481 gtagccattg ctgctctgct ctcaggaagt tgttttagcg ccgtcgccgc gcctcctgtt
     9541 tcttacggcg tggaggaaga tatcttccat ccggtacgcg cgaaacaggg gatggtggcg
     9601 tctgtcgatg ccactgccac ccaagtgggg gtagatattc taaaggaggg cgggaatgcc
     9661 gttgatgccg ccgtggcggt gggctacgcg ctggcggtaa cgcatccgca ggcagggaat
     9721 ctgggcggtg gtggttttat gctgatccgc tcgaaaaatg gcaataccac cgctatcgat
     9781 ttccgcgaga tggcacccgc taaagcgacc cgcgatatgt tccttgatga ccagggcaac
     9841 ccggacagca aaaaatcact cacttcgcat ctggcttccg gcacgcccgg tacggtcgct
     9901 ggtttctcgc tggcgttgga taagtacggc actatgccgt tgaacaaagt ggtgcagccc
     9961 gcgttcaaac tggcacgcga tggttttatc gttaacgatg ctttggcaga cgatctcaaa
    10021 acctacggta gtgaagtgtt gccgaatcac gaaaacagca aagctatctt ctggaaagag
    10081 ggcgaaccgc tgaaaaaggg cgacaagctg gtgcaggcga acctggcaaa gagcctggag
    10141 atgattgccg aaaacggccc ggacgaattc tataaaggca cgatagcgga acagattgcc
    10201 caggagatgc agaaaaacgg tggcttgatc actaaagaag atttagcggc gtataaagcg
    10261 gtcgaacgca caccgataag tggcgattat cgcgggtatc aggtttactc catgccaccg
    10321 ccatcctccg gcgggatcca tatcgtacaa atcctcaata ttctggaaaa cttcgatatg
    10381 aagaaatacg gctttggcag cgccgatgcg atgcaaatca tggcagaagc ggagaaatac
    10441 gcctacgccg accgctcgga atatcttggc gacccggatt ttgtcaaagt accgtggcag
    10501 gcgctgacca ataaagccta tgccaaatct attgccgatc aaattgatat caataaagcg
    10561 cagccatcca gcgaaattcg ccccggcaag cttgcgcctt atgagagtaa tcaaactacc
    10621 cattactcag tggtggataa agatggtaac gcggtggcgg tgacctatac gctgaacacc
    10681 accttcggta cgggcattgt cgcgggcgag agcggtattc tgcttaataa tcagatggat
    10741 gatttctccg ctaaaccggg cgtaccgaac gtttacgggc tggtgggcgg tgatgccaac
    10801 gccgtcgggc cgaataaacg tccgctgtcg tcaatgtcac caacgattgt ggtgaaagac
    10861 ggtaaaacct ggctggtcac cggtagccct ggcgggagcc ggatcatcac tacagtgctg
    10921 caaatggtgg tgaatagcat cgattatggc atgaacgtcg ccgaagcgac caatgcgccg
    10981 cgtttccacc atcagtggtt gccggacgag ctgcgtgtcg aaaaagggtt tagcccggat
    11041 acgctcaagc tgctggaagc aaaaggtcag aaagtggcgc tgaaagaggc gatgggcagt
    11101 acacaaagca ttatggttgg gccggacggt gagttgtacg gcgcatccga cccgcgctcg
    11161 gtggatgatt taacggcggg gtactaaggt tagcggccct cttcgtggga agagggctat
    11221 tttgtcaggg caagccgaag gtagcctttt ttatttcgta atcctgtaga tattcttcca
    11281 gcggctttgc cgttcccaga gaatgaattt caccactgtc tttatcaata ataaaaggtg
    11341 cgttaccagc taagcgcgcg gcctcatctc cagtttcgag aaattctcgt gcttcgaaac
    11401 agaaatacca gccctagcta aagcgtccat gtagagtaat gacgaccggg agatctgcat
    11461 catcaaggta atggttcgct ttcgcgaatg cgtcgtgata agtaatcata attataataa
    11521 atattattgt tgagtgttat attattattc ctgtgtgata cattgagcaa agacgcgttc
    11581 atcttcgtca aagatattat taaatgctgg ttttgaaaaa agttcatcgg ataagatata
    11641 gtcacgaaat aagtatctgc taatatttta tgatttcttt ttcagaacgt cgaacgggat
    11701 tttcttattt aagatatcag aatcttatga ttcgggtaaa attctaaata aatcaacatg
    11761 tcattaaaat catcatagcc attagctatt tcggctaaaa tagagactac atgtcttcgg
    11821 tccatctcac ttaaggagtg tagttccgtt gtaagttttt ccatagcttg cactgctaaa
    11881 tttcgaacaa ggaattttct gctggtaatc tctaaaaaga tggca
//
LOCUS       DAJVUY010000130        11885 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.130, whole genome shotgun sequence.
ACCESSION   DAJVUY010000130 DAJVUY010000000
VERSION     DAJVUY010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11885
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.130"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(39..353)
                     /locus_tag="OQQ72_003150"
                     /pseudo
     CDS             complement(39..353)
                     /locus_tag="OQQ72_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
     gene            complement(468..866)
                     /locus_tag="OQQ72_003151"
     CDS             complement(468..866)
                     /locus_tag="OQQ72_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HCS2012792.1"
                     /translation="MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGL
                     GAILSTWLSNQQSNQSVSGEQLESAPGTNAVSDLGQKLGVDTSTASSLLAEQLPKIID
                     ALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ72_003152"
     CDS             complement(1106..3520)
                     /gene="gyrB"
                     /locus_tag="OQQ72_003152"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HCS2012793.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ72_003153"
     CDS             complement(3549..4622)
                     /gene="recF"
                     /locus_tag="OQQ72_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HCS2012794.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLVEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ72_003154"
     CDS             complement(4622..5722)
                     /gene="dnaN"
                     /locus_tag="OQQ72_003154"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCS2012795.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ72_003155"
     CDS             complement(5727..7130)
                     /gene="dnaA"
                     /locus_tag="OQQ72_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCS2012796.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            7427..7507
                     /locus_tag="OQQ72_003156"
     CDS             7427..7507
                     /locus_tag="OQQ72_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012797.1"
                     /translation="MTIDKNWLNRSNKDPGRSLRFTHQPV"
     gene            7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ72_003157"
     CDS             7737..7877
                     /gene="rpmH"
                     /locus_tag="OQQ72_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HCS2012798.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ72_003158"
     CDS             7894..8253
                     /gene="rnpA"
                     /locus_tag="OQQ72_003158"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCS2012799.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ72_003159"
     CDS             8217..8474
                     /gene="yidD"
                     /locus_tag="OQQ72_003159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCS2012800.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ72_003160"
     CDS             8477..10123
                     /gene="yidC"
                     /locus_tag="OQQ72_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HCS2012801.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ72_003161"
     CDS             10229..11593
                     /gene="mnmE"
                     /locus_tag="OQQ72_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HCS2012802.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            11836..>11885
                     /gene="tnaC"
                     /locus_tag="OQQ72_003162"
     CDS             11836..>11885
                     /gene="tnaC"
                     /locus_tag="OQQ72_003162"
                     /inference="COORDINATES: protein motif:HMM:NF019665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase leader peptide"
                     /protein_id="HCS2012803.1"
                     /translation="MNILHICVTSKWFNID"
BASE COUNT         2719 a         3254 c         3070 g         2842 t
ORIGIN      
        1 ggacaggggt atcgcttagt ttttcaattt cctatacgtg aaccgacttc gcgagagagt
       61 ttttccagga aacgatagtc gtcataactg agagcagttt gcgccacggt gctaccatca
      121 gcggccttct gtaccagcgc gccgttataa gtaatgcagt agtcgcccgg ctgttccata
      181 tgcagctctt tcaggtagtt gtgaacgcct gcataagggc gacccgtcgt tagcacgaca
      241 ttcacgccac gggcgcgagc tgcggcaatc gcatttttaa cggcgggtga aatggtgtga
      301 tcgggcagca gaagggtgcc atccatatcg atagcaatga gtttgatagc catgagttcc
      361 ccaggtagat tagttcctga cccatgctaa cgcgattccg ctcaaaaatc agtacaacac
      421 ccgagggaaa agggggatgc aacgcgggtt gcatgctccc catttgctta gcggaagagt
      481 ttccctttca gcagttccat acctgcggaa agcagatcgt tattggcttg tgaagacact
      541 tcaccttgcg gtgagagcgc atcaataatc ttcggcaatt gttctgccag taaactggaa
      601 gccgtactgg tatccacgcc aagtttttgc ccgagatcgg acaccgcatt tgtgccgggc
      661 gccgattcca gttgctcgcc gctaactgat tgattgctct gctgattact caaccaggtt
      721 gagagaatgg cccctaagcc gccactttgc agtttttcca gcagcacctg aatgccgccc
      781 tgctcctcaa cccaacttaa aatagcctga tatttccccg catcgccttt cagaaaggca
      841 ccgacaactt catcaaaaag ccccatgata atcacctgta aagcgttacg tgttgaccca
      901 aaaagtatag atctgcggga tgataattgc ggattgcaga aataaaaagg gcggagatga
      961 tctccgccct ttttttatag cttcttgccg gatgcggcgt taacgtctta cctggcctac
     1021 aaaatcatta aaattcaata cattgcaaga ttttcgtagg cctgataagc gtagcgcatc
     1081 aggcacgctc gcatggttaa cgccattaaa tatcaatatt cgccgctttc agggcgttct
     1141 cttcaataaa cgcacgacgc ggttctacgg cgtcgcccat cagcgtggtg aacaacaggt
     1201 cagcggcaat cgcatcctta acggtaacgc gcagcatacg acgactttcc gggtccatgg
     1261 tggtttccca cagctgttcc gggttcatct cgcccagacc tttataacgc tggatggaga
     1321 gaccgcgacg agactctttc accagccagt ccagcgcctg ctcgaagctg gctaccggct
     1381 gacgacgctc gccacgttcg ataaatgcat cttcttccag caagccacgc agtttctcac
     1441 ccagcgtgca gatacgacga tattcgccac cagtgataaa ttcgtgatcc agcggatagt
     1501 cagtatccac accgtgggta cgcacgcgaa caatcggctc gaacaggttt tgttcggcat
     1561 tggtgtggac atcaaacttc cactggctgc cgtgctgttc tttgtcgttc agttcgctga
     1621 ccagcgcgtt cacccagcgg gtaacggtct gctcatcaga gaggtcggct tccgtcagcg
     1681 tcggctgata gataagctct ttcagcattg ctttcggata acgacgctcc atgcggttga
     1741 tcattttctg cgtcgcgttg tactcagaca ccagtttctc taacgcttcg ccagccaatg
     1801 ccggtgcgct ggcgttggtg tgcagcgttg cgccgtccag cgcgatagag atctggtact
     1861 gatccatcgc ttcgtcgtct ttaatgtact gttcctgctt gcctttcttc actttgtaca
     1921 gcggcggctg agcgatgtag acgtgaccgc gttcaacgat ttccggcatc tgacgataga
     1981 agaaggtcaa cagcagcgta cgaatgtgcg agccgtcgac gtccgcatcg gtcatgatga
     2041 tgatgctgtg ataacgcagt ttgtccgggt tgtactcgtc acgaccgata ccacagccaa
     2101 gcgcggtgat aagcgtcgcc acttcctgag aagagagcat cttatcgaag cgcgctttct
     2161 caacgttgag gattttaccc ttcagcggca gaatcgcctg gttcttgcgg ttacgcccct
     2221 gcttcgcaga gccgcccgcg gagtcccctt ccaccaggta cagttcggaa agcgccggat
     2281 cgcgttcctg gcagtctgcc agtttgcccg gcaggcccgc taagtcgagc gcacctttac
     2341 ggcgggtcat ttcacgcgcg cgacgcgccg cttcacgggc acgggcagca tcgataattt
     2401 tgccaaccac gattttcgcg tcggttgggt tttccagcag gtattctgcc agcagttcgt
     2461 tcatctgctg ttcaaccgcc gatttcacct cagaagaaac cagtttgtct ttggtctggg
     2521 aggagaattt cgggtccggc acttttacgg aaacgaccgc aatcaggcct tcacgcgcat
     2581 cgtcaccggt ggcgctgact ttggcttttt tgctgtagcc ttctttgtcc atgtaggcgt
     2641 tcagggtacg ggtcatcgcc gcacggaagc ctgccaggtg agtaccgccg tcacgctgcg
     2701 gaatgttgtt ggtaaagcag tagatgtttt cctggaagcc atcgttccac tgcaacgcca
     2761 cttcgacgcc aataccgtct ttttcggtgg agaagtagaa gatattcgga tggatcggcg
     2821 ttttgttctt gttcagatat tcaacgaacg ccttgatgcc gccttcatag tggaagtggt
     2881 cttctttgcc gtcacgcttg tcgcgcagac gaatggaaac gccggagttg aggaacgaca
     2941 actcacgcag acgtttcgcc agaatttcat attcgaactc ggtcacattg gtgaaggttt
     3001 cgaggctggg ccagaaacgc accatggtgc cggttttttc agtctcgccg gtaaccgcca
     3061 gcggagcctg cggtacaccg tgttcgtaga tctgacggtg aattttaccc tcgcgctgga
     3121 taaccagctc cagtttttgc gacagggcgt ttactaccga aacaccaacg ccgtgcagac
     3181 cgccggacac tttataggag ttatcgtcaa atttaccgcc tgcgtgcaga acggtcatga
     3241 tcacttccgc cgccgatacg ccctcttccg ggtgaatacc ggtcggaatg ccgcgcccgt
     3301 catcctgtac agagacagag ttatcggcgt gaatggtgac gataatttct ttacagtgac
     3361 ccgcgagcgc ttcgtcgata gcgttatcta ccacctcgaa taccatgtgg tgcagaccgg
     3421 tgccgtcatc cgtgtcgccg atatacatac ccgggcgctt acgcaccgca tccagccctt
     3481 tcaggacttt gatactggag gagtcataag aattcgacat caacgtttct cgctcattta
     3541 tacttgggtt aatccgttat tttacccttt tccacggtaa acatcttcga attttcgtcc
     3601 gacatgtcta taacgtgttc agcactgatc gcgctgacaa agacctgtga ttgcgtcgct
     3661 tttaagcggc tggcaagcag cccgcgacgc tcatcatcaa gctcagaggc aaaatcatct
     3721 atcaggtaga gacaccgccg cccgctttca cgggtgagga actctccttg cgccagacgt
     3781 aaggcgcaca tcaacagctt aagctgccca cgcgataagg tatcttccac cggcgcaccg
     3841 tcggcgcgaa tgcgtaagtc cgctttatgc gggccatgcg cggtgtaggt tagctggcga
     3901 tcgcgttcaa aattacgttc cagcacctca gcatattctg tctctttctc ccagccgcgc
     3961 tggaaagaga aagtcagaga aaactcaggg agaaattgct tacaagtatc ggccatatca
     4021 gccgcgatac cggcgctata ctccgcgcgc caggtgctga tttgctccac cagcgggatc
     4081 agctctttat cccacgggcg tagctgttcg taacgtgtca cctggcgcag cgccgcattg
     4141 cgctgcttga gcaatcgctt gagattgctc caggcggtga aaaatccggg ttcgttgtga
     4201 aagcatgccc agtcgagaaa tgctcttctg tatttggggc cgccgttgag taaagtaaac
     4261 ccttctggcg ttatcagctg catcggcatc aggtgcgcca gctccgcgac tttatgcccg
     4321 tcagtaccgt cgatgcggac tttgctgtcg ccttgtttgt ctttggttaa gccaatcgcc
     4381 gtctcgcgct cttcgccctg taatcgccca tggagaacaa atgcctcctg ctcatggcga
     4441 atgacgcgac caatctgcaa actgcgaaac gcccgaccat ggccgagcgt atagatggct
     4501 tccagcacac tggttttgcc actgccgttg gcacctacca gaaagttaaa gccgggagat
     4561 aaggcgagat ccgcggtttc gatattgcgg aaatcgcgga tcaacaagcg ggtgagggac
     4621 attacagtct cattggcatg acaacataag ccgcgctctg gctggccgca tcttcaatct
     4681 gcacgctgga aaccgaatcg gtcagcatca tgcggacgtt ttcgcatttc agcgcgttca
     4741 gaacatccag cacatagctg acgttgaagc cgatttccat ctccgcaccg ctataggtaa
     4801 cgtcgaggat ctcttccgct tcttcctgtt ccgggttgtt ggcagtgatt ttcagctggt
     4861 tttcgctgac ataaagacgt acgccgcgga atttctcgtt agagagaatt gccgcacggg
     4921 caaacgcctg cttgagcaga tcgcagccag cttccagatg tttgtccggg ttcttcggta
     4981 gaacgcggcg gtaatccggg aagcgaccat ccaccagttt ggaggtgaag ataaagtcgc
     5041 caacgtgggc acgaatgtta ttgctgccaa tctgcacgcg cagcggattg tcgccgccgt
     5101 cgagcatacg catcagttca atcacgcctt tacgcggcac gatcaccgaa tggcttggca
     5161 aagattgacc aattggcatt gaacagactg ccagacggtg accatcggtc gctacggtgc
     5221 gcagttcttc gccttcggtt tcaaacagca taccgtttaa gtaatagcga acatcctgat
     5281 gcgccatcga aaactgggtc gcttcaatca gacgcttcat cgtcgcctgc ggcagggtaa
     5341 attcgacttc gctctgccag tcatcgaggt tcgggaaatc cgccgctggc agggtagaca
     5401 gcgaaaaacg gctacgcccg gagcgcacca gcatccgttc accttccagc tgcacggcaa
     5461 tttccgcgcc ttcaggcaga ccacggcaga tatcaaagaa tttgcgcgcc ggaacggtcg
     5521 ttgctcctgg ctcgtgtggc tgaaccagcg caacacgtgc caccatttcc atctcgagat
     5581 cagtaccggt cagcgacaac gtaccgtcag caacctgtaa cagcagatta ccgagaatcg
     5641 gtagcgtagg acgaccacct aacggaccgc tcacctgttg tagcggtttt aataaatgct
     5701 cacgttctac ggtaaatttc ataggtttac gatgacaatg ttctgattaa atttgaaaaa
     5761 tcttctttga tatcgtggct ctcttcacgc aactgctcga tcttacggca ggcatgaagc
     5821 accgtcgtgt ggtcacgacc accaaacgca tcgccaatct ccggcagact gtggttagtc
     5881 agctctttcg ccagcgccat cgccatctgg cgcggacgcg ccaccgagcg ggatcgacgc
     5941 ttggaaagga gatccgcgac tttgatcttg tagtactccg ccaccgtctt ctgaatattg
     6001 tcgatggtga ccagtttttc ctgcaatgcc agcaagtcgc gcagcgcctc acgcacgaag
     6061 tcgatggtga tcgcccgtcc ggtaaagttg gcattggcaa tgacgcggtt cagcgcccct
     6121 tccagctcac gtacgttaga tcgtagacgc ttggcgataa agaacgccac ttcgcccggc
     6181 aaacgaatgt cgttttcgtc ggcctttttc atcaggatcg ccacacgggt ttccagctct
     6241 ggcggttcga tcgccacagt cagtccccaa ccgaagcggg atttcaaacg atcctcaacg
     6301 ccgttgatct ctttcggata gcgatccgag gtgagaatga tctgttgatt accttccagc
     6361 agggcgttga aggtatggaa aaactcttcc tgagatcgtt ctttattagc aaaaaactga
     6421 atatcgtcga tcagcagtgc atctacggaa cggtagtagc gtttaaactc ttcgatcgcg
     6481 ttgttttgca gggctttaac catgtcctga acaaagcgct cggagtgcat ataaaccact
     6541 ttggcattcg gcttgcgcgc cataatgccg ttacccaccg catgcagcag gtgagtttta
     6601 cccagacccg tgccgccata aaggaacaac gggttatagg caccgccagg gttatccgcc
     6661 acctggcgag ccgccgcgcg cgccagttgg ttagatttac cttcaacgaa gttatcaaac
     6721 gtgtgtttga cgtttacgtt agaacgatag gtcggttctg ccggggccgg gacgttatcc
     6781 caacctgagc gcgtagaagg cgcagcacgt tgcggctgcg tttgcgccac ctgtgcaggg
     6841 gccgcgacgt tgctcgtcac tgccgcttgt ggcgtttgcg tcaccggttt ggtgccgact
     6901 tcaaaacgca gctgtggggc atccgctccg cagaaactgg ttagcagtcc attgatatta
     6961 ttaaggtact tgtcccgtac ccaatcgagg acaaaacggt ttggcgcgta cagggccagc
     7021 gtgttatcgc tcagttccgc ctgcaatggg cgtatccaca tactgaattc tgtggctggt
     7081 aactcatcct gcaatcgggc aagacactgc tgccaaagcg aaagtgacac ggcggactcc
     7141 actcgaacaa aagtcgataa tgactaaggc tgaaacattc atgattgttg acgtacgtcg
     7201 aaaagaccct gcttgagggt gacgcacgaa ccgctgtctg cggttatatg cccgatcaag
     7261 atcctgcaaa acgatcggga ccgcggatca tagcctaaac tgcgcaagag atcttctgtt
     7321 tctcacagat tttcccgatt tatccacagg actttccaga actcgctaag tgtaaacgat
     7381 cctgccgcga ggcgggcacg atttacgccg catattgaaa aatttaatga ccatagacaa
     7441 aaattggctt aatcgatcta ataaagatcc aggacgatcc ttgcgcttta cccatcagcc
     7501 cgtataatcc tccacccggc gcgccatgct ggtttccact ggtgtgaggt cgtacatttt
     7561 ccctgcgaaa aggtgcggaa aagcgcggta aataaggaaa gagaattgac tccggagtgt
     7621 acaattatta caatccggcc tctttaatca cccatggctt cggtgtccat cgtttcattt
     7681 ttcggcggat atccaataaa gccattgaat ttattcaagt ttaggtagaa atcgccatga
     7741 aacgcacttt tcaaccgtct gtactgaagc gcaaccgttc tcacggcttc cgtgctcgta
     7801 tggctactaa aaatggtcgt caggttctgg cacgtcgtcg tgctaaaggc cgcgctcgtc
     7861 tgaccgtttc taagtaataa agctaacccc tgagtggtta agctcgcatt tcccagggag
     7921 ttacgcttgt taactcccag tcaattcaca ttcgtcttcc agcagccaca acgggctggc
     7981 acgccgcaaa ttaccattct cggccgcctg aattcgctgg ggcatccccg tatcggtctt
     8041 acagtcgcca agaaaaacgt tcgacgcgcc catgaacgca atcggattaa acgtctgacg
     8101 cgtgaaagct tccgtctgcg ccaacatgaa ctcccggcta tggatttcgt ggtggtggcg
     8161 aaaaaagggg ttgccgacct cgataaccgt gctctctcgg aagcgttgga aaaattatgg
     8221 cgccgccact gtcgcctggc tcgcgggtcc tgatagccct cattcgggtc tatcaacgcc
     8281 tgattagtcc gctactcggg ccgcattgtc gtttcactcc aacctgttca agctacggaa
     8341 ttgaggcatt gcgcaggttt ggagtgataa aaggcagttg gttgacggtg aaacgcgtat
     8401 taaaatgcca ccctttacac cctggtggtg acgatcccgt cccgcccgga ccatttgata
     8461 ccagagaaca ctaacgatgg attcgcaacg caatctttta gtcatcgctt tgctgttcgt
     8521 gtctttcatg atctggcaag cctgggagca ggataaaaac ccgcaacctc aggcccaaca
     8581 gaccacgcag acaacgacca ccgcagcggg tagcgccgcc gaccagggcg taccggccag
     8641 tggccagggg aaactgatct cggttaagac cgacgtgctt gatctgacca tcaacacccg
     8701 tggtggtgat gttgagcaag ctctgctgcc tgcttacccg aaagagctga actctaccca
     8761 gccgttccag ctgctggaaa cttcaccgca gtttatttat caggcacaga gcggtctgac
     8821 cggtcgtgat ggcccggata acccggctaa cggcccgcgt ccgctgtata acgttgaaaa
     8881 agacgcttat gtgctggctg aaggtcaaaa cgaactgcag gtgccgatga cgtataccga
     8941 cgcggcaggc aacacgttta ccaaaacgtt tgtcctgaaa cgtggtgatt acgctgtcaa
     9001 cgtcaactac aacgtgcaga acgctggcga gaaaccgctg gaaatctcca cctttggtca
     9061 gttgaagcaa tccatcactc tgccaccgca tctcgatacc ggaagcagca acttcgcact
     9121 gcacaccttc cgcggcgcgg cgtactccac gcctgacgag aagtacgaga aatacaagtt
     9181 cgataccatt gccgataacg aaaacctgaa catctcttcg aaaggtggtt gggtggcaat
     9241 gctgcaacag tatttcgcga cggcgtggat cccgcataac gacggtacca acaacttcta
     9301 taccgctaat ctgggtaacg gcatcgccgc tatcggctat aaatctcagc cggtactggt
     9361 tcagcctggt cagactggcg cgatgaacag caccctgtgg gttggcccgg aaatccagga
     9421 caaaatggca gctgttgctc cgcacctgga tctgaccgtt gattacggtt ggttgtggtt
     9481 catctctcag ccgctgttca aactgctgaa atggatccat agctttgtgg gtaactgggg
     9541 cttctccatt atcatcatca cctttatcgt tcgtggcatc atgtacccgc tgaccaaaac
     9601 gcagtacacc tccatggcga agatgcgtat gctgcagccg aagattcagg caatgcgtga
     9661 gcgtctgggc gatgacaaac agcgtatcag ccaggaaatg atggcgctgt acaaagctga
     9721 gaaggttaac ccgctgggcg gctgcttccc gctgctgatc cagatgccaa tcttcctggc
     9781 gttgtactac atgctgatgg gttccgttga actgcgtcag gcaccgtttg cactgtggat
     9841 ccacgacctg tcggcacagg acccgtacta catcctgccg atcctgatgg gcgtaacgat
     9901 gttcttcatt cagaagatgt cgccgaccac agtgaccgac ccgatgcagc agaagatcat
     9961 gacctttatg ccggtcatct tcaccgtgtt cttcctgtgg ttcccgtcag gtctggtgct
    10021 gtactatatc gtcagcaacc tggtaaccat tattcagcag cagctgattt accgtggtct
    10081 ggaaaaacgt ggcctgcata gccgcgagaa gaaaaaatcc tgattcggtg agttttcgct
    10141 aaaataaggg cggtcagttg accgcctttt ttcttttcgt agggcggata agcaccgcgc
    10201 atccgccaca caaagcaaca ggaacatcat gagcgataat gacactatcg tagcccaggc
    10261 cacgcctccg ggacgtggcg gcgttggcat cctgcgcatc tccggcttca aagcccgtga
    10321 agttgccgaa accgtgctgg gtaaactgcc taagccgcgc tacgccgatt atcttccgtt
    10381 taaagacgcc gacggcagcg tgctcgatca ggggattgcg ctatggttcc ctggcccgaa
    10441 ctcgttcacc ggcgaagatg tgctggaact gcaaggtcat ggcggtccgg tgatcctcga
    10501 cctgctgtta aaacgcattc tgaccattcc cggcctgcgg attgctcgcc ctggtgagtt
    10561 ttccgaacgc gcgtttctta acgataaact tgacttagcc caggccgagg cgattgccga
    10621 tcttatcgac gccagttcgg aacaggcggc ccgttcggca cttaactcgc tgcaaggcgc
    10681 attctccgca cgggttaatc atctggtaga agccctcacc cacttgcgca tttacgtcga
    10741 agcggcaatt gatttccccg atgaagagat cgatttcctc tccgacggaa aaattgaagc
    10801 ccagctcaat gacgttattg ccgatcttga tgcagtgcgt gctgaagcac gtcagggtag
    10861 tttgttgcgc gaagggatga aagtggtgat tgccggacgt cctaacgccg gtaaatcgag
    10921 cctgttaaac gcgctggcgg ggcgtgaagc ggcaatcgta accgatatcg ccggaactac
    10981 gcgtgacgtg ctgcgtgagc atatccacat tgacggaatg ccgctgcata tcatcgatac
    11041 cgccgggcta cgtgaagcca gtgacgaagt agaacgtatt ggtatcgagc gcgcgtggca
    11101 ggaaattgaa caggccgacc gcgtgctgtt tatggtcgat ggcaccacaa cagacgccgt
    11161 ggatccggca gagatctggc cggaatttat tgcccgtctg ccagcgaaac tgccgatcac
    11221 cgtggtgcgc aataaagccg atatcaccgg cgaaacgctg ggaatgagtg aagtgaacgg
    11281 tcacgcgtta attcgtctct cggcaaggac tggtgaaggc gtggacgtgc tgcgtaacca
    11341 tctcaaacag agcatgggct ttgacaccaa catggaaggc ggcttcctgg cgcgtcgtcg
    11401 ccacctacag gcgctggaac aggcagcgga acatctacaa cagggcaaag cgcaactgtt
    11461 gggagcctgg gcaggtgaac tgctggcgga agagttgcgt ctggcacagc agaacttaag
    11521 cgaaatcacc ggggaattta cttcagacga cctgctgggg cggattttct ccagcttctg
    11581 tattggtaag taaccgcgct tacgaagccg tattctgact gtcagatgcg gcttcgcttc
    11641 attgttagca ctcctgttat tcctcaaccc tttttttaaa cattaaaatt cttacgtaat
    11701 ttataatctt aaaaaaagca tttaatattg ctccccgaac gattgtgatt cgattcacat
    11761 ttaaacaatt ttagaataga caaaattctt gagtattata ctgtagcctc gtgtctttcg
    11821 aggaataagt gcattatgaa tatcttacat atatgtgtga cctcaaaatg gttcaatatc
    11881 gacaa
//
LOCUS       DAJVUY010000131        11785 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.131, whole genome shotgun sequence.
ACCESSION   DAJVUY010000131 DAJVUY010000000
VERSION     DAJVUY010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11785
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.131"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            30..1415
                     /locus_tag="OQQ72_003163"
     CDS             30..1415
                     /locus_tag="OQQ72_003163"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HCS2012804.1"
                     /translation="MEGGWNEGGKGISIADVMTAGAHGVPREVTEGVIDGLNYPNHEA
                     IDFYHRYKTDIQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQ
                     GMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFASTVFTRYKEKVKYWMTFNEIN
                     NQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVHYELVASALAVQTGKSINPEFN
                     IGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVHARGYYPQHMLNYFARKGFNLD
                     ITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVSNPYIDTSEWGWQ
                     IDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRIDYFASHIREMKK
                     AVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYIDKDNEGKGTLERIRKASFYWY
                     RDLIANNGENI"
     gene            complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ72_003164"
     CDS             complement(1472..1690)
                     /gene="marB"
                     /locus_tag="OQQ72_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HCS2012805.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYNQHAM"
     gene            complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ72_003165"
     CDS             complement(1722..2105)
                     /gene="marA"
                     /locus_tag="OQQ72_003165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HCS2012806.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ72_003166"
     CDS             complement(2125..2559)
                     /gene="marR"
                     /locus_tag="OQQ72_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HCS2012807.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            2771..3436
                     /gene="marC"
                     /locus_tag="OQQ72_003167"
     CDS             2771..3436
                     /gene="marC"
                     /locus_tag="OQQ72_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HCS2012808.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TYH"
     gene            complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ72_003168"
     CDS             complement(3461..4651)
                     /gene="ydeA"
                     /locus_tag="OQQ72_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HCS2012809.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ72_003169"
                     /pseudo
     CDS             complement(4801..5915)
                     /gene="yneK"
                     /locus_tag="OQQ72_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(5993..6874)
                     /locus_tag="OQQ72_003170"
     CDS             complement(5993..6874)
                     /locus_tag="OQQ72_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2012810.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTIRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE
                     AFIQLLDVPDSAKQGYQ"
     gene            6975..8363
                     /gene="sad"
                     /locus_tag="OQQ72_003171"
     CDS             6975..8363
                     /gene="sad"
                     /locus_tag="OQQ72_003171"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HCS2012811.1"
                     /translation="MTITPATHAISINPATGEQLSVLPWAGANDIENALQLAAAGFRD
                     WRETNIDYRAEKLRGIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE
                     HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK
                     HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII
                     EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL
                     LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITVAKDAEHALELANDSEFG
                     LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNIQTVWKDRI"
     gene            8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ72_003172"
     CDS             8427..9353
                     /gene="glsB"
                     /locus_tag="OQQ72_003172"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HCS2012812.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            9353..9712
                     /locus_tag="OQQ72_003173"
     CDS             9353..9712
                     /locus_tag="OQQ72_003173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HCS2012813.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            9851..11269
                     /locus_tag="OQQ72_003174"
     CDS             9851..11269
                     /locus_tag="OQQ72_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS2012814.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVAMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLMVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            11496..11735
                     /locus_tag="OQQ72_003175"
                     /pseudo
     CDS             11496..11735
                     /locus_tag="OQQ72_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; incomplete; partial in the middle of a
                     contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
BASE COUNT         2989 a         2661 c         3029 g         3106 t
ORIGIN      
        1 tatggggcgg cgcggtagcc gcgcatcagt tggaaggtgg ctggaatgaa ggaggaaaag
       61 gcatcagtat cgctgatgtg atgactgctg gcgctcacgg ggtgccgcgt gaagtgacag
      121 aaggcgttat cgacgggctt aattatccca atcatgaagc aattgatttt tatcatcgct
      181 ataaaacaga tattcagtta tttgccgaga tgggattcaa atgctttcga acttccattg
      241 cctggacacg aatctttccg caaggtgacg aacaggagcc gaatgaagag ggtttacaat
      301 tttatgatga tctgttcgat gaatgcctta agcagggaat ggaacctgtg gtgacgcttt
      361 cacattttga gatgccttat catctggtga caaaatatgg tggctggcga aaccgtaaac
      421 tgatcgactt ttttatccgc ttcgcatcaa cggtcttcac gcgctataaa gaaaaagtaa
      481 agtactggat gacgtttaac gaaatcaata atcaggtgaa tttcagcgaa agcctgtgtc
      541 catttactaa ttccggtatc ttgtattcgc cagaggaaga tatcaatgag cgcgaacaaa
      601 taatgtacca ggcggtacat tacgagttag ttgccagtgc cctggcggta cagactggaa
      661 aatcgatcaa tcctgaattt aacattggct gtatgatcgc catgtatccc atctatcctc
      721 tgacgtgtgt acccaacgat atgatgatgg ccacgaaagc aatgcatcgt cgttactggt
      781 ttactgatgt tcatgctcgt ggatattatc cgcaacatat gctgaattac tttgccagga
      841 aaggattcaa cctcgatatc acaccagaag ataacgcgat tcttgccagt ggttgtgtcg
      901 actttatcgg ctttagctac tacatgtctt ttacgacaca attttcgccc gataacccgc
      961 aactggatta tgttgaacca cgagatttgg tcagcaaccc ttatatcgat acatccgaat
     1021 ggggatggca aattgatccg gcagggctac gttattcact caactggttc tgggatcatt
     1081 tccagttgcc gctgtttatt gtcgaaaatg gatttggtgc ggttgaccag agacaagctg
     1141 acggcacggt gaacgatcac tatcgcattg attactttgc ttcccatatt cgggaaatga
     1201 aaaaagccgt agttgaagat ggtgttgact taattggcta caccccgtgg ggctgcattg
     1261 acctggtttc tgccggaaca ggggaaatga aaaagcgcta cggaatgatt tatatcgata
     1321 aagacaacga agggaaggga acgctggaac ggatacgtaa agcgtcgttt tactggtatc
     1381 gggatctcat cgccaacaat ggcgaaaata tttgagactt gaggaagata ttacggagat
     1441 gtcaggctct gtgatcagag cctgacaata actacatagc gtgttgatta taatagggca
     1501 cgccgagcgc atccgactta tcactgccag tacccatgtg atttaaatca aacggtggtt
     1561 gttcctgcga tgggggaaca accacgacat tggcacaaga agtaacaact ggctgcgtgg
     1621 tttgttccgc aacgccctgc gcggaaaaga gaataagcgc agctgctatt gcggatgaaa
     1681 gtggtttcat gattgcctca gtgacgttgt cacgttatca actagctatt gtaatgattt
     1741 aatggatgta aaaagcgcga ttcgccctgc atattggtca tccggtattt atgtggcgga
     1801 acatcaaagt aatttttgaa ggttcgggtc agagtttgtt gcgactcgaa gccatatcgt
     1861 tctgccagat agagtatcgg ctcgttactt tccttcagct tttgcgcgat ttccgtcatc
     1921 ttacggctgc ggatgtattg gcctaatgaa tgaccggttt cttttttaaa catccgttgc
     1981 aggtgccatt tagagtaacc tgaacgctct gacactttct ccagtgacag tggcgattcc
     2041 aggttgtcct cgatccagtc caaaatgcta tgaatggtaa tagcgtcagt attgcgtctg
     2101 gacatcgtca tacctctttt ttgtttacgg caggactttc ttaagcaaat gctcaagtgt
     2161 tgccacttcg tccgccgtca ggttttttgt taattcttga tgcaggtcct ggccaactaa
     2221 ttgatggcat tgttcgcata ttgccgcgcc gctggtggta agttttacca gtacgccgcg
     2281 cttatcattc gggttcggca acctttcaac ccagccttta cagaccaggc gatccagcat
     2341 acgggtcagt gctccaaggt cgacagacaa cacttttttc agttcaaccg gagtaataca
     2401 cgccgcgcag cggatagagc agagcacctt aaactgtgcc gcggtaatat ccagcggaga
     2461 cagatactcg ttaagcagac gatctttctt ctgattaacc atatggatta agcgacccaa
     2521 tggaataatt tcattgaaca gatcgctggt acttttcaca ttagttgccc tggcaagtaa
     2581 ttagttgcag ggggtaatat tgcccaggca agtataagtc aaataaatga attgaccgat
     2641 gccacgtttt gctaaatcgg ttcaagtttt ggtcaatgcg atgcaaggtt agctaaagag
     2701 tgacacttta tccttgttta ccccttatac ttttcgctga taacccagat acactggata
     2761 acaaccacca atgttagatt tgtttaaagc aattggcctg gggctggtgg tgttactgcc
     2821 gttagctaac ccattaacaa ctgtcgcgtt atttcttggc ctggcaggca acatgaacag
     2881 tgccgaacgt aatcgtcagt cgttgatggc ctcggtgtac gtatttgcca tcatgatggt
     2941 ggcgtattac gccgggcaac tggtgatgga tacatttggc atttcgattc ccggtctgcg
     3001 aattgcaggc ggcttaatcg tcgcgtttat cggttttcgg atgctctttc cgcaacagaa
     3061 agcgattgat tcaccggagg cgaaaagcaa gtcggaagag ctggaagatg aacccagtgc
     3121 caatattgcc tttgtgccgc tagcaatgcc aagtaccgct ggtccgggaa ccatagcgat
     3181 gattattagc tcggcgtcca cagtgcgtca gagttcaacc ttcgctgatt gggtactgat
     3241 ggttgcgccg ccgctgatct ttttcctggt ggcggttatt ttgtggggaa gcctacgcag
     3301 ctccggcgca attatgcggc tggtgggcaa gggtggcatt gaagcgatct cccgtctgat
     3361 gggattcctg ctggtatgta tgggtgtgca gtttattatt aacggcatcc tggaaatcat
     3421 taaaacgtac cattaaaaaa ggcccgaatg ggcctttcaa ctattgcgtc tgttcttcga
     3481 gtgtcactgg ccagcggcga aatataatga ttgaccatat taacgcggca aaagcaggca
     3541 ccgcgcccac ataaccaatc atcgacattg accagtgcaa actcacctga ttacctacca
     3601 acgcacccgc cccgattcca atattaaata tgccggagaa tagcgccatc gcgacgtcgg
     3661 tagcatctgg tgccagcgcc agcactttaa cctgcatacc aagcccgatg atcatcatcg
     3721 cgatccccca gaaaatactc agcaccccga ggtgtatttc actgttcgcc gcaggtagca
     3781 gcagtgccag acacaccagc aacagcgcaa tcgccgtact caccaacgca gacgcatact
     3841 gattacccag tttaccgaaa atcacgctgc caataatgcc cgcaccaccg agtaataaca
     3901 gtaatgccgt ggcaaagttg gcgctgaatc ccgcaatgtt ttgcacaaaa ggctcgatat
     3961 agctgtatgc cgtgtaatgg gcggtgacaa ccaccacagt taacaaataa atgctcatca
     4021 atgccgggcg gcggaacaat agcgggaggc ttttcaatga accggaatgc tcactgggca
     4081 gtaagggaag taacttaatc aggcacaaaa gggtgataag cgccccaata ccaatcgcga
     4141 agaaggtcat tcgccaaccg aaatactgcc ccacaatgcg cccgagaggt aaacctaaga
     4201 ccatcgccag tgctgtaccg gtggcaatta aactcaaggc ctgtgcccgc ttcccggccg
     4261 gagccatacg gatcgccaga gacgccgtaa tcgaccagaa aatcgcatgt gcaaaagcca
     4321 caccaatgcg actgatcacc agaacggtaa agctccacga taaaaacgac agtacgtggc
     4381 tggcaataaa caccacaaac aggcagatca gtaatttgcg ccgttcaacc tgactggtca
     4441 ttaacataaa aggcaatgac attagcgcta ctacccatgc gtaaatggtc aacatgatgc
     4501 cgacctgagc ggtttgcatg tgaaaacttt gcgcaatgtc agagagcagg ccaacaggga
     4561 caaattcggt ggtgttgaag atgaaggcgg cgactgccag cgtaacgacc cgtagccacg
     4621 ccactttgcg ggaaacagtg tttgttgtca taacagatta tcgggtgagt tgcgaaaaag
     4681 tgatgaaatg atcttaaaac ggttaatgat gtgaatacaa tgcatttgtg atctggatcg
     4741 cgttttccgt ttctctgacg ctgattctgt tccgcgtcag agagtcggta acatcacggt
     4801 ttaatgacgt tcagggaggt ctggcgtttt ggcggttgcg ggtataggtg gtctgacagg
     4861 ggagcgaggc ctgtttttca ccaggtcttc gtgagtaact tttggcggcg tttcattttt
     4921 tacaaacagt ttgagggtcc tgcgcgccat atgcttgata attttatcat cacttaatga
     4981 tgctggcatc aacacgtcat tcagatcact ttcattggga ttcataaatt ggtgatagtg
     5041 caataacata ttggcgaaaa ataaaaaaaa gtcctgaaaa tgaggagatt cttgttctgc
     5101 taaaagggat aaaaagcaga tgcagacttc gggtagtaca tgtttgttag aacctaatga
     5161 atccatcagg ctttgcaata aatcctcttt taattcgccg tctgttatgt cgagaatggc
     5221 ggtgatcaag ttaggatctt tattgacgaa ccatctgtga acctcagagt tactccataa
     5281 tcgggggagt atgacaaaat taccgcgaga gataaaattc aggacaagca aatcaaactg
     5341 gcgtaagtaa tctgcagcgg tatggtgatc cggaggcagg ggttcaatat gtggtgtatg
     5401 cgcttttttg atggggacgc caaggtggat cattggaaat tgttcaataa aatcattcag
     5461 aaacagaaag agcacacgct cgacgccggt gtgaaatacg cgccccatag tgacaggctt
     5521 tgggttggga gcgcaaaaat attaatttct ccatcatggc gaaaattatc taaataaata
     5581 gggtttaaat ttattactac ctgaaattca atattttctt tgtgtcttcc attcttgacg
     5641 ggataagtga gtttaaactg aaccttttca ttgtatagtg tgtcgttacc ccgaaaagaa
     5701 gtcctctgaa tatatgataa gttatcaagg ttgttaaata tcttttttgt ggctgagttg
     5761 gtgtttaaag acgtgcgcca ctcttcatca catattatgg tactgagtgc atcaataaaa
     5821 ttctttaaaa cttcttttac ctgaggtgca atattacgta cgggaaaatc atcaggaaga
     5881 aatatgtaat tactgatgct tactggcgta accatatttg ccccatatag tcataagtca
     5941 tcggaacatc actatatagg gcatttgagc tgcaagaact atcaaaaata gctcattggt
     6001 aaccctgttt tgccgagtca ggcacatcca gtagttgaat aaatgcctca agcggacgcg
     6061 ttttcgcacc acgacgccag accagccagg ttgttaacca acgccattgc tcagctaacg
     6121 gccacgcttc aacctggtga tgccccggca tactttccag catagagcgt ggaataagcg
     6181 caatgcctgc tcctgcgacc acacaggcca acatcccgtg atacgactcc atctcgtgaa
     6241 tagttcccgg agcggcaccg tcagcatgaa accagctctc gaagtggcga cgatacgaac
     6301 aattggcgcg gaaggcataa atgttactgc cgttaacctg actggcgcgg attactggcg
     6361 catgaccttg tggcgtgacg atcatcagct cctcgcggta taccggtatc ccgtcaatgg
     6421 cagtatggtt aatgggccca tcaataaatg ccgcattcag ttttccctcc agcactcctt
     6481 ccagcatagt gccggaaggg ccggtggaaa gtgaaaactg aattttggga taacgatggt
     6541 tgaattccgc cagcgtggcc ggaatgcgca ctgctgcggt gctttccagc gaaccaagag
     6601 aaaataaacc ttgcggctca tcgccagcga caacgctccg cgcttcatcc actaacgcga
     6661 gaatttgttg gctatagcgt aaaaagttat gcccggcagg agagagacgt aaacgctgat
     6721 tctcgcgaat aaacagatct acccccagtt ctgtttccag ctggcgtaga cggatagtga
     6781 gattcgacgg cacgcgaagc actattgctg ctgcctgggt tatgctgcca gcttcggcaa
     6841 ccgcgttgaa catctccagt tgggtcagat ccataatatt ctcgattcgt gaataagtgg
     6901 cttaatatta ttcattttaa agcaagagta aatctgcgta tcttcatacc atgactcata
     6961 aaggagatac cccgatgacc attactccgg caactcatgc aatttcgata aatcctgcca
     7021 cgggtgaaca actttctgtg ctgccgtggg ctggcgctaa cgatatcgaa aacgcacttc
     7081 agctggcggc agcaggcttt cgcgactggc gcgagacaaa tatagattat cgtgctgaaa
     7141 aactgcgtgg tatcggtaag gctctgcgcg cccgtagcga agaaatggcg caaatgatca
     7201 cccgtgaaat gggcaaacca atcaatcagg cgcgcgctga agtggcgaaa tcggcgaatt
     7261 tgtgtgactg gtatgcagaa catggtccgg caatgctgaa ggcggaacct acgctggtgg
     7321 aaaatcagca ggcagttatt gagtatcgac cgttggggac gattctggcg attatgccgt
     7381 ggaactttcc gttatggcag gtgatgcgtg gcgcggttcc catcattctt gcaggtaacg
     7441 gctacttact taaacatgcg ccgaatgtga tgggctgtgc tcagctcatt gcccaggtgt
     7501 ttaaagatgc gggaatcccg caaggcgtat atggctggct gaatgccgac aacgacggtg
     7561 tcagtcaaat gattaaagat tcgcgcattg ctgctgtcac ggtgaccgga agtgttcgtg
     7621 cgggagcggc tattggcgca caggctggag cggcactgaa aaaatgcgta ctggaactgg
     7681 gcggttcgga tccatttatt gtgcttaacg atgccgatct ggaactggcg gttaaagcgg
     7741 cggtagccgg acgttatcag aataccggac aggtttgtgc agcggcaaaa cgctttatta
     7801 tcgaagaggg aattgcttct gcatttaccg aacgttttgt ggcagctgcg gcagccttga
     7861 aaatgggcga tccccgtgat gaagagaacg ctctcggacc aatggctcgt tttgatttac
     7921 gtgatgagct gcatcatcag gtggagaaaa ccctggcgca gggtgcgcgt ttgttactgg
     7981 gcggggaaaa gatggctggg gcaggtaact actatccgcc aacggttctg gcgaatgtta
     8041 ccccagaaat gaccgcgttt cgggaagaaa tgtttggccc tgttgcggca atcaccgttg
     8101 cgaaagatgc agaacatgcg ctggaactgg ctaatgatag tgagttcggc ctttcagcga
     8161 ccatttttac caccgacgaa acacaggcca gacagatggc ggcacgtctg gaatgcggtg
     8221 gggtgtttat caatggttat tgtgccagcg acgcgcgagt ggcctttggt ggcgtgaaaa
     8281 agagtggctt tggtcgtgag ctttcccatt tcggcttaca cgaattctgt aatatccaga
     8341 cggtgtggaa agaccggatc tgacgcgaca tattcagctc tgatatactc gcaggtcttt
     8401 tcagacctgc ggtccaggag tagaaagtgg cagtcgccat ggataatgca attttagaaa
     8461 acatcttgcg gcaagtgcgg ccgctcattg gtcagggtaa agtcgcggat tatattccgg
     8521 cgctggctac agtagacggt tcccgattgg gtattgctat ctgtaccgtt gacggacagc
     8581 tttttcaggc cggagacgcg caagaacgtt tttccattca gtctatttcc aaagtgctga
     8641 gtctcgttgt cgccatgcgt cattactccg aagaggaaat ctggcaacgc gtcggcaaag
     8701 atccgtctgg atcaccgttc aattctttag tgcaactgga aatggagcag ggtattccgc
     8761 gtaatccgtt tattaatgct ggtgcgctgg tggtctgcga tatgttgcaa gggcgattaa
     8821 gcgcaccacg gcaacgtatg ctggaagtcg tgcgcggctt aagcggtgtg tctgatattt
     8881 catacgatac ggtggtagcg cgttccgaat ttgaacattc tgcgcgaaat gcggctatcg
     8941 cctggctgat gaagtcgttt ggcaatttcc atcatgacgt gacaaccgtt ctgcaaaact
     9001 actttcatta ctgcgctctg aaaatgagct gtgtagagct ggcccggacg tttgtctttc
     9061 tggctaatca ggggaaagct attcatattg atgaacctgt ggtgacgcca atgcaggcgc
     9121 ggcaaattaa cgcgctgatg gcgaccagtg gtatgtacca gaacgcgggg gagtttgcct
     9181 ggcgggtggg gctaccggcg aaatctggcg ttggtggcgg tattgtggcg attgttccgc
     9241 atgaaatggc catcgctgtc tggagtccgg aactggatga tgcaggtaac tcgcttgcgg
     9301 gtatcgccgt ccttgaacaa ttgacgaaac agttagggcg ttcggtttat taatgcagtc
     9361 tctcgatcca ctcttcgcgc gtttatcccg ttcaaaattt cgctctcgct ttcgtctggg
     9421 catgaaagag cgtcagtatt gcctggagaa aggcgcgcca gtcatcgaac aacatgcggc
     9481 ggattttgtc gctaaacgtc ttgctccggc attaccggct aatgacggta agcaaacacc
     9541 catgcgcggg catccggtgt ttatcgctca gcacgccacc gcgacctgct gtcgcggttg
     9601 tctggctaag tggcataaca ttccgcaggg tgtttcgtta agcgaagaac aacaacgtta
     9661 tatcgtggcg gtaatctatc actggctggt tgtacagatg aatcagccat gagaattgcg
     9721 gaaaacgata aaatagcatt cccagggtac ctttatttgc cgccgctgtt agcgaacatg
     9781 ctatccttta tgagaattta cttattacgt tgagataatt gccacccgca attgtatgga
     9841 cagataatta atgcatgtac accccatttc aactttccgt ttgttccagg aaggtcatct
     9901 gctacgtaat agcatcgcta tttttgcgct aaccacgctg ttctatttta ttgttgcaga
     9961 gttacggctg gttcacgaac tttctctttt ctggccgctg aatggcgtaa tggcgggggt
    10021 gtttgcccgc tatgtctggc ttaatcgact gcattactat gcgatcagtt atgtggcgat
    10081 gctggtttat gatgccataa ccaccgaatg gggactggtt tcactggtta tcaatttctc
    10141 caatatgatg tttattgtta ccgtcgcctt actggtcgtg cgggataagc gtctggggaa
    10201 aaataagtat gagccagtaa gtgccttacg gctatttaat tactgtctga ttgccgcatt
    10261 attatgcgct attgtcgggg cgattggttc ggtcagtatt gatagtctgg atttctggcc
    10321 tttgcttgcg gactggttca gtgagcaatt ctcaacgggc gtgttgatcg tgccttgtat
    10381 gctgacgttg gctattcctg gagtgctgcc gcgctttaaa gcagaacaga tgatgcccgc
    10441 catcgcgctt attgtgtcgg ttattgcctc ggtagtcatt ggcggagcgg ggagtctggc
    10501 gttcccgctg cctgcattaa tctggtgtgc agtgcgctat acgccgcagg taacatgtct
    10561 gttgaccttt gtcaccggtg cggtggaaat cgtactggtg gcaaattcgg tgattgatat
    10621 ctcggtcggt tcgccgttct ccattccgga aatgttctcc gcacgtctcg gtattgccac
    10681 gatggcgata tgcccaatta tggtttcttt tagcgtggca gcgatcaatt cgctaatgaa
    10741 gcaagttgcg ctgcgagccg actttgattt tctgactcag gtttactcac ggtccggtct
    10801 ttatgaggcg ctgaaaagtc catcgctgaa acagacacaa catctgacgg tcatgctgct
    10861 tgatatcgac tatttcaaaa gcattaacga taactatgga catgaatgtg gcgataaagt
    10921 gttaagcgtg tttgcccggc atattcagaa gattgtcggt gataaggggc tggtggcgcg
    10981 catgggcggc gaagaatttg ctgttgcagt gccgtcggtg aatcctgtcg atggtctgct
    11041 aatggcggaa aaaatccgta aaggcgttga actgcaacca ttcacctggc aacaaaaaac
    11101 gctttatctc atggtaagta ttggcgtcgg tagtggtcgc gcatcgtacc gaacgctgac
    11161 cgatgatttt aataaattga tggtcgaagc cgatacgtgt ctgtatcgct cgaagaaaga
    11221 tgggcgcaac cgtaccagca ctatgcgtta cggtgaggaa gttgtctgac atctttattc
    11281 attccgcgcg atttgaatgc aatgtgttct accactttat gatccaggaa aaggcgtatt
    11341 tcctcgatta aaccatgatc cgcgccacac ttttctcata aaactgctca ttaatcatca
    11401 ggagttgatc aaaacagggg ttcggcgtat taaattttgc taacctgtcg caccaattca
    11461 agcgggttgt atgactaatc agaagggaac ccattgtgaa aacactaaat cgtcgcgata
    11521 ttcccggtgc acagtatcca gaacgtatca ttcagtttgg tgaaggtaac ttcctgcgcg
    11581 cctttgttga ctggcaaatc gatctcctga atgagcacac cgatctgaat tctggcgtgg
    11641 tcgttgttcg tccgattgaa acttcattcc cgccgtcact gagcacgcag gatggtctgt
    11701 acaccaccat tatccgtggc ctgaatgaga aggggtgaag tggtcaacaa aaactggcca
    11761 ccgagttaga gtttttccag tatcg
//
LOCUS       DAJVUY010000132        11775 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.132, whole genome shotgun sequence.
ACCESSION   DAJVUY010000132 DAJVUY010000000
VERSION     DAJVUY010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11775
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.132"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(11..661)
                     /gene="hxpA"
                     /locus_tag="OQQ72_003176"
     CDS             complement(11..661)
                     /gene="hxpA"
                     /locus_tag="OQQ72_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpA"
                     /protein_id="HCS2012815.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTCLEHIEATETEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(672..1166)
                     /locus_tag="OQQ72_003177"
     CDS             complement(672..1166)
                     /locus_tag="OQQ72_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HCS2012816.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACLRQYHLSANEINQ
                     IINA"
     gene            complement(1250..1705)
                     /locus_tag="OQQ72_003178"
     CDS             complement(1250..1705)
                     /locus_tag="OQQ72_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HCS2012817.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            2043..3245
                     /gene="ackA"
                     /locus_tag="OQQ72_003179"
     CDS             2043..3245
                     /gene="ackA"
                     /locus_tag="OQQ72_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HCS2012818.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            3320..5464
                     /gene="pta"
                     /locus_tag="OQQ72_003180"
     CDS             3320..5464
                     /gene="pta"
                     /locus_tag="OQQ72_003180"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS2012819.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNQEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            5654..7174
                     /gene="yfcC"
                     /locus_tag="OQQ72_003181"
     CDS             5654..7174
                     /gene="yfcC"
                     /locus_tag="OQQ72_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HCS2012820.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQITVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(7207..7749)
                     /gene="yfcD"
                     /locus_tag="OQQ72_003182"
     CDS             complement(7207..7749)
                     /gene="yfcD"
                     /locus_tag="OQQ72_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HCS2012821.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(7807..8358)
                     /gene="yfcE"
                     /locus_tag="OQQ72_003183"
     CDS             complement(7807..8358)
                     /gene="yfcE"
                     /locus_tag="OQQ72_003183"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HCS2012822.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(8414..9046)
                     /gene="yfcF"
                     /locus_tag="OQQ72_003184"
     CDS             complement(8414..9046)
                     /gene="yfcF"
                     /locus_tag="OQQ72_003184"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HCS2012823.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASVAMAEHLLALGQPNLFGEW
                     CIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            9182..9829
                     /gene="yfcG"
                     /locus_tag="OQQ72_003185"
     CDS             9182..9829
                     /gene="yfcG"
                     /locus_tag="OQQ72_003185"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HCS2012824.1"
                     /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL
                     RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF
                     WQVGELGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS
                     IADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS"
     gene            9886..10248
                     /gene="folX"
                     /locus_tag="OQQ72_003186"
     CDS             9886..10248
                     /gene="folX"
                     /locus_tag="OQQ72_003186"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HCS2012825.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            10269..11162
                     /locus_tag="OQQ72_003187"
     CDS             10269..11162
                     /locus_tag="OQQ72_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HCS2012826.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVVLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPYPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(11210..>11775)
                     /gene="rpnB"
                     /locus_tag="OQQ72_003188"
     CDS             complement(11210..>11775)
                     /gene="rpnB"
                     /locus_tag="OQQ72_003188"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS2012827.1"
                     /translation="GYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSA
                     FPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKA
                     LFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQE
                     MLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         2818 a         3122 c         2944 g         2891 t
ORIGIN      
        1 atcaggtgtt tcactgaata ataacatcgc catttagctg tttggtcaca gtaatttgct
       61 ccagactgtg gaggaccaaa tcgacctcat tcaggcgcgg ggtatctgcc ggagcgttaa
      121 ccgcaatgac atggcaaccc gccgccaggc cagaaagcac gccagcggga gcatcttccg
      181 ccaccacaca ctcctgcggc gcaagcccca gcagctgcgc acctaacaga tacgcatcag
      241 gttctggttt tccgcgcttc actcgctcag cggttacaaa cacctctggt gcgggaagcc
      301 cagctatttt atggcgcgct cgcgctaccg gcatggagcc agaagtcaca atggcccacg
      361 gaatacctgc tttattcaaa tgattgagta aggcgattgc ccccggaagc gcggtaatac
      421 cttcggtttc cgtggcctcg atgtgctcca gacacgtaaa ctcggcggca atatcagcct
      481 cggatttgcc cgccataaaa tggcgcaaag aggtgatcgc ctgtttaccg tgaatgaaag
      541 ccagcacctc ttccggcgct aacccatgac gtctggccca gttgctccac gcccgttcta
      601 ccgcaggcag ggaatccacc agcgttccat caagatcaaa cagaaaacct ttgcaccgca
      661 cgcgggcctc ctcaggcgtt gataatttga ttaatttcgt tggcgctcaa atggtactga
      721 cgcaggcagg catgccacac attaagcatg cgctgatatt tttcccacat tggcgtctgg
      781 gcgttaaaac catgagtccc agcgtcaaaa tgggtatagc gcccttccac attaaccata
      841 aagcggacat aaccgaggta acgtgcttca gtggcggcgt caaagccgag gaaggtgaca
      901 cgacgttcat cgatggattg ctggtcctgc aaattagacc aggaaacatg caacgcatga
      961 tacatctcca taatgtcgat gatagtgcgg caggtttctt ctttcagctc gccaaactcg
     1021 cgatccaatt cacgcatctg taatccgtaa ccacgctcaa taattgtttg caggcgacgg
     1081 taacgttcag catttgccgg atcgagcata gtcatcatct tgtactgatt agacaaaata
     1141 agacgttgcg cgttggtcat ttccattgtt gactcctgta tcactctact acggtgaaaa
     1201 aaaaagaagg ctgagtatgc cttcttttat atgcgtaatc aggggtcaat tacaaatcat
     1261 caaggaaagt tttatccagt tgtttgaagg cgcgcttaag cgtgtcagct aatgcctggt
     1321 aatcaggctt gccttcaacg ggtgccaaca cctgtccaga ctcctgcaat ttaccgcgaa
     1381 cttcataaaa ccagttgagg atagcagggg gtaatggcgt tacagaacgc ttgcccagcc
     1441 accataatcc ctgcatgggt aaacttaagg cgaacagcgc agtggcaact gccggcccaa
     1501 gctgaccgcc cagggcaatc tgccagcaga gagtaaatac ggcgatcggc ggcataaaac
     1561 ggatcgcata acgcgtcatc ttgataacgc gattttcgac aaagaccggg gcaaggcgtt
     1621 tttccagcgg ccacgtcttt gagtaatgct gtccccggcg aaacaagcta aaaaaattaa
     1681 cagaacgatt atccggcgtt gacatgcttc acctcaactt cacatataaa gattcaaaaa
     1741 tttgtgcaaa ttcacaactc agcgggacaa cattcaaaac attttgtctt ccatacccac
     1801 tatcaggtat cctttagcag cctgaaggcc taagtagtac atattcattg agtcgtcaaa
     1861 ttcatataca ttatgccatt ggctgaaaat tacgcaaaat ggcatagact caagatattt
     1921 cttccatcat gcaaaaaaaa tttgcagtgc atgatgttaa tcataaatgt cggtgtcatc
     1981 atgcgctacg ctctatggct ccctgacgtt tttttagcca cgtatcaatt ataggtactt
     2041 ccatgtcgag taagttagta ctggttctga actgcggtag ttcttcactg aaatttgcca
     2101 tcatcgatgc agtaaatggt gaagagtacc tttctggttt agccgaatgt ttccacctgc
     2161 ccgaagcacg tatcaaatgg aaaatggacg gcaataaaca ggaagcggct ttaggtgcag
     2221 gcgccgctca cagcgaagcg ctcaacttta tcgttaatac tattctggca caaaaaccag
     2281 aactgtctgc gcagctgact gctatcggtc accgtatcgt acacggcggc gaaaagtata
     2341 ccagctccgt agtgatcgat gagtctgtta ttcagggtat caaagatgca gcttcttttg
     2401 caccgctaca caacccggct cacctgatcg gtatcgaaga agctctgaaa tctttcccac
     2461 agctgaaaga caaaaacgtt gctgtatttg acaccgcgtt ccaccagact atgccggaag
     2521 agtcttacct ctacgccctg ccttacaacc tgtacaaaga gcacggcatc cgtcgttacg
     2581 gcgcgcacgg caccagccac ttctatgtaa cccaggaagc ggcaaaaatg ctgaacaaac
     2641 cggtagaaga actgaacatc atcacctgcc acctgggcaa cggtggttcc gtttctgcta
     2701 tccgcaacgg taaatgcgtt gacacctcta tgggcctgac cccgctggaa ggtctggtca
     2761 tgggtacccg ttctggtgat atcgatccgg cgatcatctt ccacctgcac gacaccctgg
     2821 gcatgagcgt tgacgcaatc aacaaactgc tgaccaaaga gtctggcctg ctgggtctga
     2881 ccgaagtgac cagcgactgc cgctatgttg aagacaacta cgcgacgaaa gaagacgcga
     2941 agcgcgcaat ggacgtttac tgccaccgcc tggcgaaata catcggtgcc tacactgcgc
     3001 tgatggatgg tcgtctggac gctgttgtat tcactggtgg tatcggtgaa aatgccgcga
     3061 tggttcgtga actgtctctg ggcaaactgg gcgtgctggg ctttgaagtt gatcatgaac
     3121 gcaacctggc tgcacgtttc ggcaaatctg gtttcatcaa caaagaaggt acccgtcctg
     3181 cggtggttat cccaaccaac gaagaactgg ttatcgcgca agacgcgagc cgcctgactg
     3241 cctgatttca caccgccagc tcagctggcg gtgctgtttt gtaacccgcc aaatcggcgg
     3301 taacgaaaga ggataaaccg tgtcccgtat tattatgctg atccctaccg gaaccagcgt
     3361 cggtctgacc agcgtcagcc ttggcgtgat ccgtgcaatg gaacgcaaag gcgttcgtct
     3421 gagcgttttc aaacctatcg ctcagccgcg taccggtggc gatgcgcccg atcagactac
     3481 gactatcgtg cgtgcgaact cttccaccac gacggccgct gaaccgctga aaatgagcta
     3541 cgttgaaggt ctgctttcca gcaatcagaa agatgtgctg atggaagaga tcgtcgcaaa
     3601 ctaccacgct aacaccaaag acgctgaagt cgttctggtt gaaggtctgg tcccgacacg
     3661 taagcaccag tttgcccagt ctctgaacta cgaaatcgct aaaacgctga atgcggaaat
     3721 cgtcttcgtt atgtctcagg gcactgacac cccggaacag ctgaaagagc gtatcgaact
     3781 gacccgcaac agcttcggcg gtgccaaaaa caccaacatc accggcgtta tcgttaacaa
     3841 actgaacgca ccggttgatg aacagggtcg tactcgcccg gatctgtccg agattttcga
     3901 cgactcttcc aaagctaaag taaacaatgt tgatccggcg aagctgcaag aatccagccc
     3961 gctgccggtt ctcggcgctg tgccgtggag ctttgacctg atcgcgactc gtgcgatcga
     4021 tatggctcgc cacctgaatg cgaccatcat caacgaaggc gacatcaata ctcgccgcgt
     4081 taaatccgtc actttctgcg cacgcagcat tccgcacatg ctggagcact tccgtgccgg
     4141 ttctctgctg gtgacttccg cagaccgtcc tgacgtgctg gtcgccgctt gcctggcagc
     4201 catgaacggc gtagaaatcg gtgccctgct gctgactggc ggctacgaaa tggacgcgcg
     4261 catttctaaa ctgtgcgaac gtgctttcgc taccggcctg ccggtattta tggtgaacac
     4321 caacacctgg cagacctctc tgagcctgca gagcttcaac caggaagttc cggttgacga
     4381 tcacgaacgt atcgagaaag ttcaggaata cgttgctaac tacatcaacg ctgactggat
     4441 cgaatctctg actgccactt ctgagcgcag ccgtcgtctg tctccgcctg cgttccgtta
     4501 tcagctgact gaacttgcgc gcaaagcggg caaacgtatc gtactgccgg aaggtgacga
     4561 accgcgtacc gttaaagcag ccgctatctg tgctgaacgt ggtatcgcaa cttgcgtact
     4621 gctgggtaat ccggcagaga tcaaccgtgt tgcagcgtct cagggtgtag aactgggtgc
     4681 agggattgaa atcgttgatc cagaagtggt tcgcgaaagc tatgttggtc gtctggtcga
     4741 actgcgtaag aacaaaggca tgaccgaaac cgttgcccgc gaacagctgg aagacaacgt
     4801 ggtgctcggt acgctgatgc tggaacagga tgaagttgat ggtctggttt ccggtgctgt
     4861 tcacactacc gcaaacacca tccgtccgcc gctgcagctg atcaaaactg caccgggcag
     4921 ctccctggta tcttccgtgt tcttcatgct gctgccggaa caggtttacg tttacggtga
     4981 ctgtgcgatc aacccggatc cgaccgctga acagctggca gaaatcgcga ttcagtccgc
     5041 tgattccgct gcggccttcg gtatcgaacc gcgcgttgct atgctctcct actccaccgg
     5101 tacttctggt gcaggtagcg acgtagaaaa agttcgcgaa gcaactcgtc tggcgcagga
     5161 aaaacgtcct gacctgatga tcgacggtcc gctgcagtac gacgctgcgg taatggctga
     5221 cgttgcgaaa tccaaagcgc cgaactctcc ggttgcaggt cgcgctaccg tgtttatctt
     5281 cccggatctg aacaccggta acaccaccta caaagcggta cagcgttctg ccgacctgat
     5341 ctccatcggg ccgatgctgc agggtatgcg caagccggtt aacgacctgt cccgtggcgc
     5401 actggttgac gatatcgtct acaccatcgc gctgactgcg attcagtctg cacagcagca
     5461 gtaatctcgt catcatccgc agctttgcgc tgcggatatc tgaaccggaa ataatcacta
     5521 tttccggttt tttattctct taatctgcat taatcctttc tgattatctt gcttaactgc
     5581 gctgcatcaa tgaattgcgc catttcactt tgcatactta ccactttgtt ttgtgcaagg
     5641 gaatatttgc gctatgtccg caatcactga atccaaacca acaagaagat gggcaatgcc
     5701 cgatacgttg gtgattatct tttttgttgc tattttaacc agccttgcca cctgggtagt
     5761 tccggtgggg atgtttgaca gtcaggaagt gcagtatcag gttgatggtc aaacaaaaac
     5821 acgcaaagtc gtagatccac actcatttcg cattctgact aacgaagcag gcgaacctga
     5881 gtatcaccgc gtacagctgt tcacgacggg cgatgaacgc ccgggcctga tgaacttccc
     5941 gtttgaagga ttaacctcag gatcgaaata cgggacagct gttggcatca tcatgtttat
     6001 gctggtgatt ggcggcgcgt ttggcattgt gatgcgtaca ggaaccattg ataacggtat
     6061 cctggcgctt attcgccata cccgcgggaa tgaaattctc tttattcctg cgctgtttat
     6121 tctgttttca cttggcggcg cggtatttgg tatgggagaa gaggccgtcg cctttgccat
     6181 tatcatcgca ccgctaatgg tccggctggg ctatgacagt attaccaccg tcctggtgac
     6241 ctatattgcc acgcaaatcg gttttgccag ttcgtggatg aacccgtttt gtgtggtcgt
     6301 tgctcagggg attgccggcg ttccggtgct ttctggctcc gggttgcgca tcgtggtgtg
     6361 ggttatcgcc actatgattg gcctgatctt taccatggtg tacgcctcac gagtgaaaaa
     6421 gaatcctctt ctgtcacgcg tgcatgagtc cgaccgcttc tttcgtgaaa agcaggcgga
     6481 tgttgaacaa cgtccgttta cctttggtga ctggctggta ttgattgtcc tgaccgccgt
     6541 aatggtctgg gtgatttggg gcgtgatcgt taatgcctgg tttattccag aaattgccag
     6601 ccagttcttc accatgggtc tggtgattgg catcatcggc gttgttttcc gccttaacgg
     6661 catgacggtt aataccatgg cttcatcctt taccgaaggg gcgcgaatga tgatcgcccc
     6721 tgccctgctg gtgggtttcg ccaaagggat tttgctgctg gtcggtaatg gtgaagcggg
     6781 tgatgccagc gtgttaaata ccatcctcaa cagcattgcc aatgccatta gcggtctgga
     6841 caacgcggtc gcggcctggt ttatgttgct cttccaggcg gtatttaatt tcttcgtgac
     6901 gtccggttct ggtcaggcgg cgttaaccat gccgttactg gcaccgcttg gcgatctggt
     6961 cggtgttaac cgtcagatta ccgtgctggc attccagttt ggtgatggct tcagtcacat
     7021 catttaccca acctcagctt cgttaatggc aactctcggt gtgtgcaggg tggacttccg
     7081 taactggctg aaggtgggcg cgaccctact tggactgctg tttattatgt ccagcgtcgt
     7141 agtgatcggc gctcagttga tgggctacca ctaaaaatgt taagagccgc aattgcggct
     7201 cttttttcat tctgccgttt cagtctctac ggcttcattt ttggcattgc gcttcatcca
     7261 caacgccagc gctttcagcg agtctggagt gaactcatcg cagcgtgcgg tgatttcttc
     7321 cggcgtcagc cagcaaactt cactgacttc atcttcctgt agggcgaagg gaccgtgaga
     7381 gacgcagctg aacaacgcgc cccagacacg gcaattttta tcttcgaaat agaactgccc
     7441 gtgctcggca aaggggacac cggcaatgcc caactcttct tccgcttcgc gacgcgcgga
     7501 ttccagcagt tgctcatcgg cctgaaccac accgcctgcg gtcgcatcta acatgccggg
     7561 taaaaagtct tttgtctcgg tacgacgctg gaccagaatt ttgcccatgc catcatgcac
     7621 gacgatgtaa gttgcacgat gacgcagaca ctgtgcccgc atttgttccc ggctggcttg
     7681 tgcaatgact tcgttctctt cattgacaat atccacccat tcagtacttg ccaaacgacg
     7741 ctgttccatt atcaggaaac cttctttttc tggcgctctt acggcgcatt ttgagttgtg
     7801 ggtaaattac ggattaatcg cgacctgcgc aatgatactt tgatcattga gtgcgattac
     7861 actaagtacg tcattatcca gcatgccata actcgccgga ttaccgcctt tcggaatact
     7921 caccgagccg gggttgaagt ggaaaatctc cccccgctgt tctgccactg gcagatgggt
     7981 atgaccgtac accagcacat cgttctggtt taaagcaggt agattttccg ggccaaaaag
     8041 atgaccatgc gtcaaaaaca gacgttgttt ttccagtaat acctgttgcc acggcgcggt
     8101 tatcgggaaa tgcagcagca tttgatccac ttcgctgtcg cagttgccgc gcacagcgat
     8161 aaccttatgt gccacttcat taagccgttc agcgactttg gctggcgcgt aaccctccgg
     8221 taaagcatta cgcgggccgt gattcaacac gtcgccaagg atcaccagcc actgggcacc
     8281 gctttgggca aacaactcca gaacacgttc cgtcgccggt aacgacccat gaatgtccga
     8341 tgcaaacatc agtttcatca ctcactcctc gtcgaaaaaa cgtaagctat gatactggat
     8401 tctgtcgttg ctatcagcca gattgcttcg ccgaaagtgc aataaaacgc tggacagacg
     8461 ctcgctgcca ctggaatgtc gcataatcca ccaggcgttc tggcacctca tcgccatgta
     8521 gtaccaggcg gttaatcatt agcgccagat cagtatcagc aatgcaccat tcaccaaata
     8581 aattcggctg acccagtgct aacaaatgtt ctgccatcgc gacactggct tttccctcgg
     8641 ccgttagtgg cgcttttttc gcccccgcaa agacaacatc cgtcggacgc tcttcgcgga
     8701 tgggcatcag atcgctgcgc agccaggcct gaatctgtcg tgcacgcgca cgattttcta
     8761 aatcaagcgg ataaatacgt tcccaggtcg gtggcgcaaa tcgatcttcc agatactccg
     8821 caatggcaga agattcactc aactcaaaat catcgatttg taataacggc acacggcgtg
     8881 tctgaccgta accttgccac gtcggctgca aatgttcacc gctgtcgagg tcgatggtct
     8941 tgatatgaaa cgacaggcct ttttcctgca acgccaccca agcggataac acataagggg
     9001 agaaaaagtg ggcatctgac caaagcgtga tagcgggttt actcattatg tcctcggcaa
     9061 taaaggaggc tggctatcaa actatagagc ctttttgtca ctgtcacgtg acgaatactc
     9121 acgtaagtcg ccgcgctttc tatacttgtg gtgttcagat gattaaacaa ccggagctgc
     9181 aatgatcgat ctctatttcg ccccgacacc caatggtcac aaaattacgc tgtttctcga
     9241 agaagcagag cttgattatc gcttgattaa ggtagacctg gggaaaggcg gtcagtttcg
     9301 tccggaattt ttgcgcattt cgcccaacaa caaaattccg gcaattgttg atcattctcc
     9361 tgccgatggc ggcgaaccgc taagcctctt tgaatctggt gccattttgt tgtatctggc
     9421 tgagaaaacg gggctctttt tgagtcatga aacgcgtgaa cgcgccgcca cattacagtg
     9481 gttattctgg caggtaggcg aactggggcc gatgcttggg caaaatcatc attttaatca
     9541 cgcagccccc caaaccattc cttacgctat tgaacgttat caggttgaaa ctcagcgtct
     9601 ttaccatgta ctaaacaagc ggctggaaaa ctcgccctgg ctgggaggcg agaactacag
     9661 cattgcggat attgcctgct ggccgtgggt taatgcctgg actcgccagc gaattgacct
     9721 cgcaatgtat ccggcagtca agaactggca tgagcggatc cgttcgcgcc ctgccaccgg
     9781 gcaggcactg ctaaaagcac aactcggtga tgagcgttcg gatagttaac agaaacaggt
     9841 tctcgtgtat tatttcatcc taagtaaaac aacggagaac ctgcaatggc acaacctgcc
     9901 gctattattc gtataaagaa ccttcgttta cgtacgttta tcggaattaa ggaagaagaa
     9961 attaacaacc gtcaggatat tgttatcaat gtgacgatcc actaccccgc cgataaagcg
    10021 cgcactagcg aagatatcaa cgatgcgctg aattatcgca ccgtaacgaa aaacattatt
    10081 cagcatgtag agaataaccg tttctctttg ttggaaaaat taactcagga tgtgctcgat
    10141 atcgcacgtg aacatcactg ggtgacgtat gctgaagtgg agatcgataa actgcacgcg
    10201 ctgcgctacg ccgattcggt atccatgacc ttaagctggc agcgttaacc gccatatcgg
    10261 gaggctgcat gaacatagtg atcaccggag ggacgggatt aattggtcgc catttgattc
    10321 cgcgtttgct ggagctgggc catcaaatca cggtagtgac gcgtaaccca cagaaagcca
    10381 gttccgttct cggccctcgg gtgacgctat ggcaagggct agccgatcaa agcaacctca
    10441 acggcgttga tgcggtaatc aacctggccg gagaaccgat tgctgataaa cgctggactc
    10501 acgagcaaaa agagcgtctc tgccaaagcc gctggaatat cacgcaaaaa ctggtcgatt
    10561 tgattaatgc cagcgacacg ccgccgtcgg tactcatttc cggctcggca acgggctatt
    10621 atggcgactt aggtgaagtg gtggttaccg aagaggaacc gccgcataac gaatttactc
    10681 ataaactctg cgcccgctgg gaagagattg cctgccgggc gcaaagtgac aaaacgcgag
    10741 tgtgcctgct gcgaaccggc gtggtactgg caccggacgg cggtattctc ggtaaaatgc
    10801 tgccaccgtt tcgtcttggc ctgggcgggc cgattgactc tggtcggcag tatctggcct
    10861 ggattcatat tgatgatatg gtcaacggta ttctctggct gctggataac gagctccgcg
    10921 ggccatttaa tatggtttcg ccctacccgg tacgcaatga acaatttgcc catgcgctcg
    10981 gtcacgcgct gcatcgcccg gccattttgc gcgtccccgc gaccgccatt cgactgttaa
    11041 tgggcgaatc ttcagtactg gtattaggtg gacaacgcgc gctgcctaaa cggctggaag
    11101 aagcgggttt tgcgtttcgc tggtacgatt tagaagaggc gctggcggat gtcgttcgct
    11161 gatgtggttt acagcaaaca tccgccagtt aactcccggt gttacaggat tagtggcttt
    11221 gcgcgataag atcgtctggt gaaagtcggg tcaccatcat aactaactct ctgtctaaac
    11281 ctctatccag catctcctga gcaatacgca gggcttcttc gtgtttgccc tgcattgcgc
    11341 cttcttcacg taatctgtca gcaatggtca tcagtttctc cttttcttgt ggtgcgcgtt
    11401 ccgctatctc accaataaat gcacgaaaac gctgggcatc ccctgtttgt aatacgtaat
    11461 taaacagggc ttttagctgt ctgtcattag tgttccctgt aactagcagc gaaacaattt
    11521 ggtcgactaa tcccaacaga tcgcgctgac gaatatgttt ctgaattaac tccaacagcg
    11581 ccattttgcg gtgttgcata atctcgtcat ccggcaccac ggtaatatcc accaacggaa
    11641 acgctgatga atatattttg cgggctatag caggctcggc aaattcatca agccagcaga
    11701 gtgaataagg ataaggactt ctgcaaccat gataaaacag catcgggatc accaatggaa
    11761 gctctttata gcccg
//
LOCUS       DAJVUY010000133        11755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.133, whole genome shotgun sequence.
ACCESSION   DAJVUY010000133 DAJVUY010000000
VERSION     DAJVUY010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.133"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(67..714)
                     /gene="ychE"
                     /locus_tag="OQQ72_003189"
     CDS             complement(67..714)
                     /gene="ychE"
                     /locus_tag="OQQ72_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HCS2012828.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF
                     ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN"
     gene            1192..3867
                     /gene="adhE"
                     /locus_tag="OQQ72_003190"
                     /gene_synonym="adhC"
     CDS             1192..3867
                     /gene="adhE"
                     /locus_tag="OQQ72_003190"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HCS2012829.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGILSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3991..4887
                     /locus_tag="OQQ72_003191"
                     /pseudo
     CDS             3991..4887
                     /locus_tag="OQQ72_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="OQQ72_003192"
     CDS             complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="OQQ72_003192"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCS2012830.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6391..6804
                     /gene="hns"
                     /locus_tag="OQQ72_003193"
     CDS             6391..6804
                     /gene="hns"
                     /locus_tag="OQQ72_003193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HCS2012831.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6948..7856)
                     /gene="galU"
                     /locus_tag="OQQ72_003194"
     CDS             complement(6948..7856)
                     /gene="galU"
                     /locus_tag="OQQ72_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HCS2012832.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="OQQ72_003195"
     CDS             complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="OQQ72_003195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HCS2012833.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="OQQ72_003196"
     CDS             complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="OQQ72_003196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HCS2012834.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQCREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            10181..10639
                     /locus_tag="OQQ72_003197"
     CDS             10181..10639
                     /locus_tag="OQQ72_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HCS2012835.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10689..11531
                     /gene="purU"
                     /locus_tag="OQQ72_003198"
     CDS             10689..11531
                     /gene="purU"
                     /locus_tag="OQQ72_003198"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HCS2012836.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
BASE COUNT         3174 a         2931 c         2672 g         2978 t
ORIGIN      
        1 cgggaacaaa gtaaaaataa tgacgaagta aacggagcat ggcagctccg tttcatttga
       61 aaggaattaa ttaagcaggc cggggaaaat ccccttaata ccagtaacga taaattcaat
      121 ccccaatgcc atcagcaata gccccataat acgcgtaatc acgttgatgc cggtctggcg
      181 taaaacccgt accagccaag gtgccatgcg gaacaatccc cagcaacata aagcgaacaa
      241 tgcaatagcc acaaagaaac caaacagata gctaatgctg tgataacgcg taccccagac
      301 gatggtagaa ctgatcgccc ctggccccgc catcaacggc aacgccaatg gcaccacacc
      361 aatgctttca cgtaccgcgg tttctgattt ttcttgcttg ttctgtttat cctcgccaag
      421 cttgccgctg atcatcgaca tcgctatcgt caccaccagg atgcccccgg cgatacggaa
      481 cgaatcaatt gatataccaa aaagttgcag aatcgtgtcg ccgagaaaaa gcgagatcca
      541 caagataatg gccacagaca ggttggctgt aaggttagtt ttgtttcgcg ctgccgctgt
      601 ctgataactg gtcatgctga taaagacggg aataatccct accgggttga ccagcgcaaa
      661 taacccgatg aaaaatttga agtaaacggg aaaatcaaaa aaggtctgaa tcacggttag
      721 ctccgaagca aaagccggat aatgttagcc ataaataagg ttgaaaagac gcgctgacaa
      781 tacgcctttt gacagcattt ttcacctcct aactacttaa aattgctatc attcgttatt
      841 gttatctagt tgtgcaaaac atgctaatgt agccaccaaa tcatactaca atttattaac
      901 tgttagctat aatggcgaaa agcgatgctg aaaggtgtca gctttgcaaa aaatttgatt
      961 tggatcacgt aatcagtacc cagaagtgag taatcttgct tacgccacct ggaagtgacg
     1021 cattagagat aataactcta atgtttaaac tcttttagta aatcacagtg agtgtgagcg
     1081 cgagtaagct tttgattttc ataggttaag caaatcatca ccgcactgac tatactctcg
     1141 tattcgagca gatgatttac taaaaaagtt taacattatc aggagagcat tatggctgtt
     1201 actaatgtcg ctgaacttaa cgcactcgta gagcgtgtaa agaaagccca gcgtgaatat
     1261 gccagtttca ctcaagagca agtagacaaa atcttccgcg ccgccgctct ggctgctgca
     1321 gatgctcgaa tcccactcgc gaaaatggcc gttgccgaat ccggcatggg tatcgtcgaa
     1381 gataaagtga tcaaaaacca ctttgcttct gaatatatct acaacgccta taaagatgaa
     1441 aaaacctgtg gtattctgtc tgaagacgac acttttggta ccatcactat cgctgaacca
     1501 atcggtatta tttgcggtat cgttccgacc actaacccga cttcaactgc tatcttcaaa
     1561 tcgctgatca gtctgaagac ccgtaacgcc attatcttct ccccgcaccc gcgtgcaaaa
     1621 gatgccacca acaaagcggc tgatatcgtt ctgcaggctg ctatcgctgc cggtgctccg
     1681 aaagatctga tcggctggat cgatcaacct tctgttgaac tgtctaacgc actgatgcac
     1741 cacccagaca tcaacctgat cctcgcgact ggtggtccgg gcatggttaa agccgcatac
     1801 agctccggta aaccagctat cggtgtaggc gcgggcaaca ctccagttgt tatcgatgaa
     1861 actgctgata tcaaacgtgc agttgcatct gtactgatgt ccaaaacctt cgacaacggc
     1921 gtaatctgtg cttctgaaca gtctgttgtt gttgttgact ctgtttatga cgctgtacgt
     1981 gaacgttttg caacccacgg cggctatctg ttgcagggta aagagctgaa agctgttcag
     2041 gatgttatcc tgaaaaacgg tgcgctgaac gcggctatcg ttggtcagcc agcctataaa
     2101 attgctgaac tggcaggctt ctctgtacca gaaaacacca agattctgat cggtgaagtg
     2161 accgttgttg atgaaagcga accgttcgca catgaaaaac tgtccccgac tctggcaatg
     2221 taccgcgcta aagatttcga agacgcggta gaaaaagcag agaaactggt tgctatgggc
     2281 ggtatcggtc atacctcttg cctgtacact gaccaggata accaaccggc tcgcgtttct
     2341 tacttcggtc agaaaatgaa aacggctcgt atcctgatta acaccccagc gtctcagggt
     2401 ggtatcggtg acctgtataa cttcaaactc gcaccttccc tgactctggg ttgtggttct
     2461 tggggtggta actccatctc tgaaaacgtt ggtccgaaac acctgatcaa caagaaaacc
     2521 gttgctaagc gagctgaaaa catgttgtgg cacaaacttc cgaaatctat ctacttccgc
     2581 cgtggctccc tgccaatcgc gctggatgaa gtgattactg atggccacaa acgtgcgctc
     2641 atcgtgactg accgcttcct gttcaacaat ggttatgctg atcagatcac ttccgtactg
     2701 aaagcagcag gcgttgaaac tgaagtcttc ttcgaagtag aagcggaccc gaccctgagc
     2761 atcgttcgta aaggtgcaga actggcaaac tccttcaaac cagacgtgat tatcgcgctg
     2821 ggtggtggtt ccccgatgga cgccgcgaag atcatgtggg ttatgtacga acatccggaa
     2881 actcacttcg aagagctggc gctgcgcttt atggatatcc gtaaacgtat ctacaagttc
     2941 ccgaaaatgg gcgtgaaagc gaaaatgatc gctgtcacca ccacttctgg tacaggttct
     3001 gaagtcactc cgtttgcggt tgtaactgac gacgctactg gtcagaaata tccgctggca
     3061 gactatgcgc tgactccgga tatggcgatt gtcgacgcca acctggttat ggacatgccg
     3121 aagtccctgt gtgctttcgg tggtctggac gcagtaactc acgccatgga agcttatgtt
     3181 tctgtactgg catctgagtt ctctgatggt caggctctgc aggcactgaa actgctgaaa
     3241 gaatatctgc cagcgtccta ccacgaaggg tctaaaaatc cggtagcgcg tgaacgtgtt
     3301 cacagtgcag cgactatcgc gggtatcgcg tttgcgaacg ccttcctggg tgtatgtcac
     3361 tcaatggcgc acaaactggg ttcccagttc catattccgc acggtctggc aaacgccctg
     3421 ctgatttgta acgttattcg ctacaacgcg aacgacaacc cgaccaagca gactgcattc
     3481 agccagtatg accgtccgca ggctcgccgt cgttatgctg aaattgctga ccacctgggt
     3541 ctgagcgcac cgggcgaccg tactgctgct aagatcgaga aactgctggc atggctggaa
     3601 acgctgaaag ctgaactggg tattccgaaa tctatccgtg aagctggcgt tcaggaagca
     3661 gacttcctgg cgaacgtgga taaactgtct gaagatgcat tcgatgacca gtgcaccggc
     3721 gctaacccgc gttacccgct gatctccgag ctgaaacaga ttctgctgga tacctactac
     3781 ggtcgtgatt atgtagaagg tgaaactgca gcgaagaaag aagctgctcc ggctaaagct
     3841 gagaaaaaag cgaaaaaatc cgcttaatca gtagcgctgt ctggcaacat aaacggcccc
     3901 ttctgggcaa tgccgatcag ttaaggatta gttgaccgat ccttaaactg aggcactata
     3961 acggcttcca caacagggag ccgttttctt atgccacttc tcaatgatct gctcgatttc
     4021 agtgaccatc cgcttatgcc tccgccctct gcacaactat ttgcagaaca ccttcccacc
     4081 gagtggatac aacactgcct gacgctttct gctcatgcga ccgttcgccg ccgtcgttta
     4141 ccgggggaca tggttatctg gatggtggtg caatgagcca attaccgatg ttgttcgccg
     4201 tctgaacctg agcgcggatg gcgaagcggg gatgaacctg ctggcccgca gcgctgtcac
     4261 ccaagcgcgt cagcgcgtgg gggccgcccc agtggaatgg ctcttccgcc agaccgcaca
     4321 gacaggggcg cggaacgtta cctgaaggat gactggcacg gcctgcaact ttttgccatt
     4381 gatggcgcac agttcaggac acctgataaa cccgagctgc gtgaatatta tgggtctgcc
     4441 aacacatcca ctaagcggca gaacgcctac ccggttatgc gtctggtggc cttaatgaac
     4501 ctgggaagtc acattctgct gaatgccgtg accgcacctt accggcagag cgaaactgtg
     4561 ctggcccact ccatgctcgc caccatcccg gataactcta ttacgttgtt tgataagctt
     4621 ttttacagcg aagacctgct gctaacgctg aaccagaagg gttgtaaccg ccactggcta
     4681 ctgcctgcgt ggaagaatat cgcatcagaa atgatagagc tgggaaacac ggcgtcacca
     4741 gggaccatcc cgaaacgact ggagcatctt cggggtgctc tggaagtggt gttcataaca
     4801 aaacgccccc gaccatcaag gccgaggtcg gttaagatat caaaaacccg ttatcctgtg
     4861 aaacatagtg ccgctcctct taagtgaacg gcattgccct tctggggccg tattttttgt
     4921 ttacccaaag caacttttcc ataaaccgac agcattagcc ttcatcatat ttgcgacgat
     4981 gtataacgcc taaatacagg gatattgtac tttacaggtc acaagtcaac gtcggtgctt
     5041 aagagccctg tgaggcgtat agcggcgtta aaaaactgcc gagaagggta tatagcccgg
     5101 aagaagtgcg taaaacgaac tgacaggata aaagtgccct gctcaccctg tcagtaaaga
     5161 aattcttatt aatcgtggcg atgcctttcc tgaatagccg ttaatgagcc gacttgtaac
     5221 gcctctttat agtgtttacg gcatacagaa acgtatcgtt cattaccacc aattaccacc
     5281 tgctcacctt cgttataagg tctgcctgct tgatcaagac gcagcaccat gcttgcttta
     5341 cggccacaaa aacagatggt ttttaattca accagtttgt cggaccatgc cagtaagtat
     5401 tggctgccaa taaataattc acctcgaaaa tcggtacgta aaccataaca aagtacgggt
     5461 atatcgagtt gatcgacaac ctccgataat tcatatactt gttgtctggt taaaaactgg
     5521 cattcatcaa ccagtacgca atgaattgcc tgctgttcat gttccgcacg aatctcatca
     5581 aataatgatg aattttggtt aaataatttt gcaggcgatg acaaacctat acgcgaactg
     5641 actttcccgg caccaaagcg atcatcaatt tctgccgtat atacgacagt gcgcatgccg
     5701 cgttcttggt aattgtatga agattgcaac aatgctgtag acttacccgc attcattgcg
     5761 gaatagtaga aatatagctg tgccatcagc cacaggccct caatgatatg aaataaagtt
     5821 ggctggagtt tatcataatt cgtcagtttt tcagctcaac agtatgcaca gaagtgggta
     5881 tatgcgttct cccttacgaa gccttgcata atccttctga gctatcatta caactgcctc
     5941 gcttgttata agcgggtaaa tgactgctgg taactattca caatctttaa cctgttgcgc
     6001 aagtaatagc cctctgttga cctccaggag atagtgcaat actaagtcca tgctcttatt
     6061 gcgactgttc tacttttcat cattcgctta atagggaatt ctcgtaaaca caactaatac
     6121 agaagactga aaggccgtca gcctacgata atctccccat aaaatgtgac atgaatcagg
     6181 aagttttaac ctcacgtgct gcgaaatcat cggtgtaaat agggctatat gccgcgtctt
     6241 ttctggctaa ttttatgaaa agatatttat tggcggcaca aaataaagaa caattttgaa
     6301 ttccttacat tcctggctat tgcacaactg aatttaaggc tctattatta cctcaacaaa
     6361 ccaccccaat ataagtttga gattactaca atgagcgaag cacttaaaat tctgaacaac
     6421 atccgtactc ttcgtgcgca ggcaagagaa tgtacacttg aaacgctgga agaaatgctg
     6481 gaaaaattag aagttgttgt taacgaacgt cgcgaagaag aaagcgcggc tgctgctgaa
     6541 gttgaagagc gcactcgtaa actgcagcaa tatcgcgaaa tgctgatcgc tgacggtatt
     6601 gacccgaacg aactgctgaa tagccttgct gccgttaaat ccggcaccaa agctaaacgt
     6661 gctcagcgtc cggcaaaata tagctatgtt gacgaaaacg gcgaaactaa aacctggact
     6721 ggccagggcc gtactccagc tgtaatcaaa aaagcaatgg atgagcaagg taaatccctc
     6781 gacgatttcc tgatcaagca ataatctttt gtagattgca attgctaaaa atcccgccat
     6841 cggcgggatt ttttattgtc cggtttaaga caatttaata agaataagct ataaaaaaac
     6901 ggcgtcgatt gttcaacgcc gtttcgtgga taacaccgat atggatgtta cttcttaatg
     6961 cccatctctt cttcaagcca ggctttaaat tccgtgccaa gggtgttatg acgaataccg
     7021 tattcaacga aggcctgcat gtaacctaat ttattaccgc agtcatggct cttccctttc
     7081 atatgatagg cttccaccgt ttctttttcg atcagcatat caattgcgtc ggtgagctga
     7141 atttcatcac cagctcccgg aggggttttt gccagcaacg gccaaatatc cgcgctaagt
     7201 acgtaacgac ccacaatagc gagattagac ggcgcaacat ccgctttcgg tttttctacc
     7261 acaccaacca tcggtacact ttcacccggc gctaattcaa cgcctttgca atccacaacg
     7321 ccatatgcgg tcacatcagc aacctgttca accatgatct ggctatgacc cgtttcatca
     7381 aagcggcgga tcatctctgc caggttatcc tgtgacaaat cggattcata ttcatccaga
     7441 ataacatcag gcaaaataac agctaccggt tcatcaccca ctaccgggtg agcacacaat
     7501 accgcgtgtc ccaggccttt cgccagcccc tgacgaactt gcataatagt cacgtgcggc
     7561 ggacaaatag actgcacttc atcaagcagt tgacgtttta cacgtttttc cagcattgct
     7621 tccagttcaa aactggtatc aaagtggttt tcaatcgagt ttttagatga gtgcgtaacc
     7681 agcacaattt cagtaatgcc agccgcaata cattcattca cgacgtattg aattaatggc
     7741 ttatcgacaa gtggcagcat ctctttcggg atggctttcg tcgccggcaa catcctggtt
     7801 cctaatcccg caacggggat aacggctttt ttgactttcg tattaatggc agccatttaa
     7861 attctcctgg actgttcgtg ttttgaacgt gttcatattt ctgtatcgca tcccagtata
     7921 tcagcacccc gaaggggcta agttctgaaa aggaggcgag ttagcataat taagacaatt
     7981 acttatacga atggcgacga tagtaccacc agccgacatt agcaggtaat gcaaatttag
     8041 tccgcgttat cgtttgctca ttctgcagac aacatcaagc gcagtcgacc accggttccc
     8101 catatttggc attgccaggc atcgcatcgc tggctcaatt gattcaaata agcgttacct
     8161 aaagtgccta acggaacacc attactgatt tgcacctggt gttcgccggt atttaacgtc
     8221 gcattcagac ccgcagaaac cagaatgaga tttttcagtt cgcgatgata atagccaact
     8281 aatagcggaa actgccccgg cagattggcc tgacggagta aatggtttac ctgcttcaat
     8341 aacgcgccca gctctggcaa ccgttgattt tggtgtgcaa gctgttcctg taataatccg
     8401 ttaaacaatg cgcgtaataa caaggcagca agtacgccat tatgtccagc tcgggtgaca
     8461 tcaaggcaat aaaatgccag atcgttttcc gaaagtgcgg caatatcaag caccaggccg
     8521 ggtttgtccg cggcaaccaa ttgacgataa ttaacccggc aatgggaaat cacctgctga
     8581 accggcggtt gtagttcctg taataatttc gccgctgcgg cagggttatc aaccgttgca
     8641 tcccaatcgc gaaaaagcct ttcctcttcc tcaacgcgcg aattaaacat gctgggatag
     8701 agacaggcaa aaaccatctc gcgcaagcga ttcagatctt taactggttt cagcaaaaca
     8761 tcttcaacgc ccagacgtaa cgctttggca atatctgcca tattttcagt ggcagatatc
     8821 accagaactg gggtctggtc gcctctgtta cgtatatgct ccagcagttt aagcccgttc
     8881 attcgtggca tcgcgatatc acatatcatc aggtctggag tgaaacctcc cagcaactca
     8941 agggcatcca ccccatcagc cgccagtacc gttgtcgctc ccaatgagga aaaccatgaa
     9001 tccagaagcg agcgaaatac ctgctcatct tcaacaatga gaatctgttt tccgaccaat
     9061 ggctgcgtca tgttctctcc cctgactggc tttactcaat agtggcatgc tattgccacc
     9121 tgcgcctgtc agaattaact taagtgtaga taaaaattct ggtcaaatgt tggtgcgtac
     9181 caacggcaaa agttcgtcca ttttcctttc cactgccagc tgtccggccg caatggcagc
     9241 gtgcgcgcga tggaaatcaa gcgtagatat ttgcgggcaa acaggttgaa tcagaatatc
     9301 gggcggatca cctgccatgc ggttcctttt aaggcggttc tccagcacct ggatagaagt
     9361 ggtcataatc tctgttgccg ttggcgctgt caccgcccga cgtgttgtta tactgcctaa
     9421 cctttctttc agacgcgcat gccacggcaa agattcacca ttctcgctat tttcttcact
     9481 gacattaaag gagagcaaat cttgttgcat caaatgagca tcgtgctgca ggtcgaccgc
     9541 tatcacaata tcagccccca atgcacgcgt gagggaaata ggaattgggt taactactgc
     9601 tccatcaacc agccagtagc cgttatgtgc aacaggtgcc atgagtcctg gaatactgca
     9661 tgatgcgcga atagcaagat ggagatcgcc ttcagtaaac cataattcac gtcccgtact
     9721 taaattggtg gcaacagccg caaagcgacg ggaacaattt tcgatctctg tttccggcat
     9781 tatttcgcgg cattgattga agacacgctc gccgcgcagt aacccaccgc gctgccagga
     9841 gagatccatc aggcgtaaaa catcccaata actgaaagag gtcacccaat cttccagcgc
     9901 agataatcga tcgcatgcat aggcagcgcc caccagcgaa ccaattgaac atcctgcaac
     9961 gatatcaatt tcaataccca ctttttttag cgcattaata acgccaatat gcgaccaacc
    10021 tctcgccgcg ccagatccca gcgccagccc tatttttatc tttctcatta ttcccgcaag
    10081 attcccctgg aatgcaatcg tagccacatc gctactgctc ggttaacata gtgctactca
    10141 ggcggttaat acgccgttat tgtttccagg gagattattt gtgtctcagc tttgtccctg
    10201 tggtagtgct gtcgagtata gcctatgttg ccacccttat gtgtctggtg aaaaggttgc
    10261 acctgatcca gaacatctca tgcgttcgcg ttactgcgct tttgtgatgc aagacgcaga
    10321 ttatttaata aagacctggc atccctcttg tggagcagcg gcgttacgtg ccgaattgat
    10381 ggccggattt gcgcatactg aatggttggg attgaccgta tttgaacatt gttggcagga
    10441 cgccgacaat atcggatttg tcagttttgt tgctcgattt accgaaggtg gcaaaacagg
    10501 tgcaataatt gaacgttcgc gatttttgaa agaaaacggt caatggtact atattgacgg
    10561 tacacgtccg cagtttggtc gcaacgatcc ctgcccttgt ggttcaggta aaaaatttaa
    10621 aaagtgctgc ggccaataat ggttgacggt acggtttagc aaacactctc aacaaggttt
    10681 ttccagcaat gcattcactc caacgtaaag ttctgcgtac tatttgtccg gaccaaaaag
    10741 gtctgatcgc acgtattacc aatatttgct acaagcacga gttaaatatc gtacagaaca
    10801 atgaatttgt tgatcaccgt accgggcgct tttttatgcg cacggaactg gaagggattt
    10861 ttaatgattc caccctgctg gcggatctcg atagcgcatt gccagaaggc tccgtgcgtg
    10921 agctgaatcc tgccggtcgt cgccggatag tgattctggt cactaaagaa gcgcattgcc
    10981 ttggcgattt gttgatgaaa gccaattacg gcggcctgga tgtcgaaatc gcggcagtta
    11041 ttggtaacca cgatacttta cgttctctgg ttgagcgttt tgatattccg tttgagctgg
    11101 taaaccatga agggttaagc cgcaacgagc acgatcaaaa gatggcagac gccattgatg
    11161 cttataaacc tgactatgtg gtgctggcga agtatatgcg ggtattaacg ccggaatttg
    11221 tggcacgctt cccgaataaa atcatcaata ttcaccattc attcctgcct gcgtttatcg
    11281 gcgcacgtcc ttatcaccag gcctatgaac gtggtgtgaa gattattggc gcaaccgctc
    11341 actatgtgaa tgacaatctg gacgaaggcc caatcatcat gcaggacgtt attcatgtcg
    11401 atcataccta cacagctgaa gatatgatgc gcgcaggtcg tgacgtcgag aaaaacgtct
    11461 taagtcgtgc gctatacaaa gtactggcac agcgcgtctt tgtttacggt aatcggacga
    11521 ttattcttta atcgccagca aaaataactg gttaccttta atccgttacg gatgaaaatt
    11581 acgcaaccag ttcatttttc tcaacgtaac actttacagc ggcgcgtcat ttgatatgat
    11641 gcgccccgct tcccgataag ggagcaggcc agtaaaaagc attaccccgt ggtggggttc
    11701 ccgagcggcc aaagggagca gactgtaaat ctgccgtcat cgacttcgaa ggttc
//
LOCUS       DAJVUY010000134        11708 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.134, whole genome shotgun sequence.
ACCESSION   DAJVUY010000134 DAJVUY010000000
VERSION     DAJVUY010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11708
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.134"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            400..1056
                     /gene="pphA"
                     /locus_tag="OQQ72_003199"
     CDS             400..1056
                     /gene="pphA"
                     /locus_tag="OQQ72_003199"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
                     /protein_id="HCS2012837.1"
                     /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPW
                     RDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGD
                     WFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQ
                     VLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ
                     "
     gene            complement(1057..1248)
                     /locus_tag="OQQ72_003200"
     CDS             complement(1057..1248)
                     /locus_tag="OQQ72_003200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HCS2012838.1"
                     /translation="MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCF
                     PIEDFIDGFWRPAQEYGDF"
     gene            complement(1353..1589)
                     /locus_tag="OQQ72_003201"
     CDS             complement(1353..1589)
                     /locus_tag="OQQ72_003201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HCS2012839.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(1707..3146)
                     /gene="rsmF"
                     /locus_tag="OQQ72_003202"
     CDS             complement(1707..3146)
                     /gene="rsmF"
                     /locus_tag="OQQ72_003202"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HCS2012840.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAAGVGLNWDENLRLWQRDKELWLFPVDIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(3226..5859)
                     /gene="yebT"
                     /locus_tag="OQQ72_003203"
     CDS             complement(3226..5859)
                     /gene="yebT"
                     /locus_tag="OQQ72_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HCS2012841.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLNNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVSGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISATGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5828..7111)
                     /gene="yebS"
                     /locus_tag="OQQ72_003204"
     CDS             complement(5828..7111)
                     /gene="yebS"
                     /locus_tag="OQQ72_003204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HCS2012842.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            7241..7738
                     /gene="msrC"
                     /locus_tag="OQQ72_003205"
     CDS             7241..7738
                     /gene="msrC"
                     /locus_tag="OQQ72_003205"
                     /EC_number="1.8.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine (R)-S-oxide reductase"
                     /protein_id="HCS2012843.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLTTLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7835..8533
                     /gene="proQ"
                     /locus_tag="OQQ72_003206"
     CDS             7835..8533
                     /gene="proQ"
                     /locus_tag="OQQ72_003206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HCS2012844.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            8553..10601
                     /gene="prc"
                     /locus_tag="OQQ72_003207"
     CDS             8553..10601
                     /gene="prc"
                     /locus_tag="OQQ72_003207"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HCS2012845.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10793..11674
                     /gene="htpX"
                     /locus_tag="OQQ72_003208"
     CDS             10793..11674
                     /gene="htpX"
                     /locus_tag="OQQ72_003208"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HCS2012846.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
BASE COUNT         3009 a         2884 c         3019 g         2796 t
ORIGIN      
        1 tgaatgaaaa tcagccggag atgattttac ataattgcta cggaattatt caatacagga
       61 attgcttgcg tctgcatgga ttgacctgaa attttcccga aaatttctct aaaaaactcg
      121 aaaaaaatgg taactggttg aatgtattaa tatgcaatgg tacgtgtcag ggattaaaag
      181 atgaacgtaa atttattcaa cgcattaatt ttaaagggtt ttattgtttg ttgacgaaaa
      241 caggaatcgt gttcggtctc tttttatctg ttaaaagcca gaagcatttc cttcgctgac
      301 tttatagtca accataacac acactctact gtctgagtcc agcgtttttt aacattcttg
      361 ttaagattat gtgatcttta gcacgggagg aaaatattga tgaaacagcc tgcgcccgtt
      421 tatcagagaa ttgcgggtca tcaatggcga catatctggc tttctggcga tatacacggt
      481 tgtcttgagc agttgcgccg caaattatgg cattgtcgtt ttgatccgtg gcgagattta
      541 cttatctcag tgggagacgt tatcgatcgt gggccgcaaa gtttacgttg tctgcagtta
      601 ctggaacaac attgggtttg tgcggtaaga ggcaatcatg aacagatggc gatggatgcg
      661 ctggcatccc agcagatgtc tttgtggttg atgaatggcg gcgactggtt tattgcgctg
      721 gcagataatc aacagaaaca agcgaaaacg gcgctggaaa aatgtcagca tttgcccttt
      781 attcttgaag tacacagtcg caccggcaag catgttattg ctcatgcgga ttatccagat
      841 gatgtttatg aatggcaaaa ggacgttgat ttgcatcagg tcttgtggag ccgctcgcga
      901 ttaggtgaac gccaaaaagg gcagggaatt acaggtgctg atcatttctg gtttggtcat
      961 acaccgttgc gacatcgcgt ggatattggc aacctgcatt atattgatac cggtgctgtc
     1021 tttgggggcg aactgactct tgtgcaattg caatgattaa aaatcaccgt actcctgtgc
     1081 aggtcgccag aaaccatcta taaaatcctc aatcggaaaa caaccgccct ggcggatccg
     1141 ttgatcgctc atagaataaa gacactgctg ttccgtgttg tagacatcca caacaatatc
     1201 ttcacaaccg ccatccaggt agcaaacaaa aagtaccagc gcgaacattt catccccgaa
     1261 gtgtggtgcc gtaccgttaa gtttaggaga gattttacaa cgggggaata accaggacaa
     1321 ataacccgcc atgccgacgg gttctttttg gatcaggcaa gacgcataat ccaggcatca
     1381 gattgttgat cgtaacgggt acggtaaagg acagagtgtt cgccatttag cagggcaggg
     1441 atactggttt cagcatccca ggcatcgagt tgcatacata aatcggggtc agatttacaa
     1501 ggaatggtta acgttcgatc acccggcgat tcaccgtgta attcgccgtc gtcgatttca
     1561 aaagcgccta tgcgcacact ggttttcatc ttcgtgctct ccatttagct gccggttgtg
     1621 gtacgaccag tccgatcgca ccatttttca gcctagttga ggcagccgaa tgtgccagtc
     1681 aaaaagtgcg ctttttttgt gcgctgtcag gcgttaccgg taaaaagttt cccatcgcgc
     1741 accagttcac gcggatagct gtttttcaat cgcgaaccaa tccgtttggc taaaccaatc
     1801 ggttgatgct ggaaagtaac caacacgtca tccgccactg gcgcggcttg cgggtaaaca
     1861 tcgcgcccgc gataccactc ctccgcttcc tgcggtgtca gttcaaaagc gttcacattg
     1921 tcgggggtgg caagggcaat aactgcttca tgctgccagc gataaccttt gttgtgcgtt
     1981 tcggcaagtt taatccccaa gcgagaaaat cggactttac cgatcagggc ttcaatgtcc
     2041 accgggaaca accacagttc tttgtcacgc tgccagaggc gcaggttttc atcccagttt
     2101 aagccaacac ctgcagccgc ctggcgaatt tgtccagctt cgcgatcttt caccgggctg
     2161 aacggaaaat taccgacttt gtatttgggg gcgggtaagg cgggaatcgc ctgagtttta
     2221 cgcagacgag caacgaagaa gccttcgcag tcgtaaattt gtgggaaaac atgcaaaaag
     2281 ccttcttcgg tcagcgcttt gtttgcacca gggaagagat cgccaagtgg taaaaactct
     2341 actgcgtcgg ggtaagtctc tttcagccac aggcaaacgg cttcgttttc ttcctggttt
     2401 aaggtacagg tcgagtaaac cagcgtacca ccaggacgta atgcatgaaa ggcgctgtcg
     2461 ataagctccc gttgtgtagc tgcgatttcc tgattgcttt ctggtgacca gttttttagc
     2521 gcatcgggat ctttacgcac cacgccttcg ccggagcagg gagcgtccag caaaatggca
     2581 tcaaacattt ctggcactgc cgcaccaaac acgcggccat caaaatgtgt gagcgcaaca
     2641 ttactgatgc cacagcggct gatattggca tgtaacactt ttacccgact ggcggaaaac
     2701 tcattggcaa ggattgcccc ttcgttattc atccgcgcgg caatttgcgt cgtttttgag
     2761 cctggcgcag cagcgacatc catcacccgc tgtggtgcat taccgtcagc aaacaaggcg
     2821 gcgacgggca acattgaact ggcttcctga atataaaaca ggccacttaa atgctcggcg
     2881 gtactaccca atggcaatgc atcttcattg tcgcgttcaa tccagaaacc ttcttcacac
     2941 cacggaattg gcgtaagcgt ccagccataa ggagcggtta attgcaggaa atcagcaacg
     3001 gagattttca gcgtattaac gcgaatgctg cggcgcaacg ggcgctgaca ggcggcaaga
     3061 aaatcatcaa atgagagcgt cgaaggcata gcttcgcgca tttgtgtcag aaacgcgtcc
     3121 gggaaataaa cggtgtgttg ggccacgagc atgtaccact ggcaaaaaaa caggcgcgca
     3181 gtttagcata aacgctccgg cgcaggcacg ccggagcagt gggcattatt tgggaagcgc
     3241 agttccccat tcacgccact ctttcggttc actttcctgc aacaggaagt gtttgccttc
     3301 ctgggctttc ggtgccagtg gcgtacccgg aggcgtggcg aaggcgatgc cgccacggat
     3361 aaactggtta aaggtgccgg ttttcactac gccgcccgtc agaccaaagt ccagactgta
     3421 acccgatgcc aaccagaaga cggaattgtt acgcaccagg tgttgatagc gtttactgat
     3481 gcgcatcgca atcatcacgc gatctgacaa tgtccccagc gtcattccgg taaccgtacc
     3541 tacttccaga ccacggaaca gcacaggcgt accaatacct aacgaaccgg cttccggtgc
     3601 ttcgacaata atgcttaagc catccaggta acgcgaatca gtaatagtag cttcttgcaa
     3661 ctcaaagtca cggcgaggat taccccgacc tggttcgaca ttgatatacg gctggaggat
     3721 agtatctaga tgctcaacgc ccgtggctga aatttgcggt gtgaccaccg agaagcgcgt
     3781 accgccgcgg gcgaaggtct ggacatactc cggatagagc accgcctttg cctgtacttc
     3841 attgcgcgcg gtaatcagat ccagcgtctg gatttgcccg atatcaatac cgagatagcg
     3901 aattggcatc ccgaccgcca gttttccggc atcgaaagcg tgaagcgtaa tctgcccact
     3961 aaccgcacgg gccgctgttt cggaagcata cagaattcgt ttgtcgcctt tacgctgact
     4021 ggcgctggca ccgctgaggt tatcgaagct aatggctccc tttaatgctc tggagagcgg
     4081 ggatgcctgt acggtcaggc cactaccatt cagctgaact ttcgccccgc cttctgccca
     4141 gaacacgcta ttgctggtca gaaggttgcg atactccggc ttaatatgca gatcgatatc
     4201 aaacgcgtta gctcgcggac gcacggtaat cacttcacca acttcaaatt tacggtacag
     4261 cactaccgat cctgcctgca catccggcag cgtctctgca ctcaaactca cggttgtggt
     4321 gggtaaatcg ctaaggctgt tctccagcgc tttttccaga ttggcataca gtggatagct
     4381 ggctttcatc tcacctttat cgcctggcag aatacgtatc ccgccgttaa tccattctga
     4441 ggcgctggca ccaagaaact caacgccatc cagccccacc ttcacgtcga cacggctgtt
     4501 gacgacaaat ttgctatcgc cttttaccag ttcgcgatgc tgaggctcga tggcgacggt
     4561 aaaggtaacg cctttgctgg tgagtttacg atcaataacc tggcctacct gcacgccgtg
     4621 aagaatgagc ggctgacccg tatcaatacc gtaactttcc ggcgcggtca gggtcagcgt
     4681 cagaacatca ggttcatgca gcagtgcttt ttcgcctggc acaacaacga actctttgcg
     4741 tggctcgcca tcgccgggta ccaactcgaa ggttttgcca gtcagcaggg cgctgagatt
     4801 ggcatcgcta agggataatt tcggattacg taattcgatg cgggtatttt cacgaagcag
     4861 ggtaacgacg ctgggatcaa ctgtcatttc cccagtgact ttaccaccag gatttaaatc
     4921 cagtttagtt agctgtccga cttccagtcc ctgatacatt aatggcgtcg agtcggcggt
     4981 taatccggcc ccactcggca gttccagttt gattattacg ccacgctggc tatgggcgag
     5041 gtcttcatac agaccaaagg tatcttccgc ctcggcaggt ttcgactctt ctggtgaatc
     5101 gaaggcaatc gcaccgttaa ccagtgccgc caggctttcc agtttcacct tcgcgccact
     5161 gatactgaca ttggcatcaa cgccggaaac gttccagaaa cggctacctt ttttcaccag
     5221 atcggtaaaa cgccgctcga tcaggacatc aatcaccacg ccttgtttgt tgggattgat
     5281 ggcatagtcg tagacttttc ccaccgggat cttgcggaaa tagaccaatg aaccgctgtt
     5341 cagcgaaccg agatcggggg cttgcaggtg gatcatcaga tcgccattgt tcagccgata
     5401 tttcggttgg gtatcgagtg cgacaaagtg atcctgctct ttacctgtac ccggcatcat
     5461 gccgatatag ttcccaccga cgagggcgtc cagcccggag acacctgcca acgatgcttt
     5521 tggcgtcacc agccagaatt gagtctcttc gcgcagcgca tctttcatat cggacttgat
     5581 gctgaccttg acttcaatct tacgaagatc gtcgctgagg ctgatatcct gcactgttcc
     5641 gacttcaacg ccctgataac gaacaggcgt acggcccggg acaataccat ccgccgacat
     5701 aaagtcgatg gtgacggtat tacttcggtc ctgataactg tcccaaatca gccaaccggc
     5761 aatcattagc gcgatgaaag gcagcagcca gaaaggtgag atacggcgtt tatttttaat
     5821 ctgcgcttca gtcgtcgaag cgggcgtttc ctgactcatg tgcatcccaa agtaagcggc
     5881 tgtccagcca ttccacagca agaatagtca aaattacggc tgcgccaaaa taaaacgcag
     5941 ccggtcccat agtaaaagcg aggatctgat cgcgattaat cagcgacatg gttaaagata
     6001 tgacaaacag gtcgagcatc gaccagcgtc caatccaggt caccatccgc agtaacagaa
     6061 tgcgtgtgcg taaaccttgc tggcatttaa aatgaatgct caacagtaaa gtgaacatga
     6121 cgatcacttt agtaaacggt accagaatac tggcgataaa cacgattccg gcgaccgcaa
     6181 tgttgctact tgccagcgac ataatcccgg aaagaatcgt atcttcctgc cggccaccat
     6241 tcagataaat gatagaaata ggcaataggt tggctggtaa caacaaaacg attgacgcta
     6301 acagcgccgc ccagcatttt tgcaaactat gacgacgacg caggcgtagc gggatatggc
     6361 aacgcgggca gcgaccacgc tgatcaggat agccggtaaa atggcaccca agacagacac
     6421 gaagtttctc gtccctacgc gtagcggggc gctgcggata atatcgctcc cacagctcct
     6481 caacattaag atgtgacaac gtcaccgtcg ttaaaatcac caacgccaca aaagagaaca
     6541 agccgacacc cgcctggata tgggcataat cctgtacctt tatagaagca acgccaatgc
     6601 cgaccaggta gatatccagc attacccact ctttaagacg ctcaagcatc agcagtaccg
     6661 gacgtaaatt cattcccagt cggttaccaa accataaata tgctatggag gacaccagaa
     6721 tgaggggggc accaataacg cagaaaaaga ccatcgcccc cgttatcgta tcgccctgtt
     6781 tggtcatttg ccagatgcct tgcatgacgt ttgcgtcgat acgaatacct aacagccaga
     6841 tatgcaacag cggttcgccc caggcaaacg gcatcagcaa cagcatggtg aaagccattg
     6901 ccgccaggcg cgttagcgac cagtcgcgcc cgtcgcgaat ttttgcctga cagcgcggac
     6961 aataggcact ctgatgagaa tttatctcgg gcaggctaaa cagcatgtca cattgcgggc
     7021 aacgttggta atcaccacgc ggcagttcct cgccgattga cctcactgtt atcttttttg
     7081 tcggcgtaat ttgtggtgtg ttaagagcca tgacgtgcca aatgtaataa gaattaacat
     7141 taatcttaac ccatgatggg aatgatcttg agcattaacg catttaatgc ttattttaat
     7201 aggctggcag ttccaggtaa gacaaacaag tgattatata atgaacaaaa cagaatttta
     7261 cgcggattta aatcgcgact ttaacgcgct gatggcggga gaaaccagtt ttctgacaac
     7321 gcttgcgaac accagtgcgt tgttatacga gcgtctcact gacgtaaact gggcaggttt
     7381 ttatttgctt gaggacgata cactggtact cggaccattt cagggcaaaa ttgcctgtgt
     7441 ccggataccc gtcgggcgcg gggtgtgcgg cactgcggtt gcccgcaatc aagtgcagcg
     7501 tatcgaggat gttcacgcgt ttgacgggca tattgcctgt gatgcggcga gtaattctga
     7561 aattgttctg ccgctggtgg tgaaaaatca gattattggt gttcttgaca tcgatagtac
     7621 cgtcttcggt cgctttacag acgaggacga gcaaggctta cgtcagcttg tggcacagct
     7681 tgaaaaagtg cttgcaacga cggattacaa aaaattcttt gcgagcgtcg caggataatc
     7741 aacggataac gtagcattta ctggtagcgt cattataatg acgcctgttc atgcctgcgc
     7801 ttgttggcta cgtccgttgt aatcaggaaa tttcatggaa aatcaaccta agttgaatag
     7861 cagtaaagaa gtaatcgcgt ttctggccga acgttttccc cactgtttca gtgcggaagg
     7921 tgaagcgcgt ccgctgaaaa tcggtatttt tcaggatttg gtcgatcgtg ttgccgggga
     7981 aatgaacctg agcaaaacgc aattacgatc cgctttacgt ctctacactt cgagctggcg
     8041 ttatctttac ggtgttaaac ccggcgcaac gcgtgtcgat cttgacggca acccatgcgg
     8101 tgagctggac gagcaacatg tagagcatgc tcgcaagcag cttgaagaag cgaaagcgcg
     8161 tgttcaggca cagcgtgctg aacagcaggc gaaaaaacgc gaagctgccg cagctgctgg
     8221 tgagaaagaa gacgcaccgc gccgcgaacg caagccacgt ccgaccacgc cacgccgcaa
     8281 agaaggcgct gaacgtaaac ctcgtgcgca aaagccggta gagaaagcgc caaaaacagt
     8341 aaaagcacct cgcgaagaac agcacacccc ggtttctgac atttcagctc tgactgtcgg
     8401 acaagctctg aaggtgaaag cgggtcaaaa cgcgatggat gccaccgtat tagaaatcac
     8461 caaagacggc gtccgcgtcc agctgaattc gggtatgtct ttgattgtgc gcgcagaaca
     8521 cctggtgttc tgaaacggag gccgggccag gcatgaacat gttttttagg cttaccgcgt
     8581 tagctggcct gcttgcaata gcaggccaga ccttcgctgt agaagatatc acgcgtgctg
     8641 atcaaattcc ggtattaaag gaagagacgc agcatgcgac ggtaagtgag cgcgtaacgt
     8701 cgcgcttcac ccgttctcat tatcgccagt tcgacctcga tcaggcattt tcggccaaaa
     8761 tctttgaccg ctacctgaat ctgctcgatt acagccacaa cgtgctgctg gcaagcgatg
     8821 ttgaacagtt cgcgaaaaag aaaaccgagt taggcgatga actgcgttca ggcaaactcg
     8881 acgttttcta cgatctctac aatctggcgc aaaagcgccg ttttgagcgt taccagtacg
     8941 ctttgtcggt actggaaaag ccgatggatt tcaccggcaa cgacacttat aaccttgacc
     9001 gcagcaaagc gccctggccg aaaaacgagg ctgagttgaa cgcgctgtgg gacagtaaag
     9061 tcaaattcga cgagttaagc ctgaagctgg caggaaaaac ggataaagaa attcgtgaaa
     9121 ccctgacacg ccgctacaaa tttgccattc gtcgtctggc gcaaaccaac agcgaagatg
     9181 ttttctcgct ggcaatgacg gcgtttgcgc gtgaaatcga cccgcatacc aactatcttt
     9241 ccccgcgtaa taccgaacag ttcaacactg aaatgagttt gtcgctggaa ggtattggcg
     9301 cagtgctgca aatggatgat gactacaccg ttatcaattc gatggtggca ggtggtccgg
     9361 cagcgaagag taaagctatc agcgttggtg acaaaattgt cggtgttggt caaacaggca
     9421 agccgatggt tgacgtgatt ggctggcgtc ttgatgatgt ggttgcctta attaaagggc
     9481 cgaagggcag taaagttcgt ctggaaattt tacctgctgg taaagggacc aagacccgca
     9541 ctgtaacatt gacccgtgaa cgtattcgtc tcgaagaccg cgcggttaaa atgtcggtga
     9601 agaccgtcgg taaagagaaa gtcggcgtgc tggatattcc gggcttctat gtgggtttga
     9661 cagacgatgt caaagttcaa ctgcagaaac tggaaaaaca gaatgtcagc agtgtgatca
     9721 tcgacctgcg tagcaatggc ggtggggcgt tgactgaagc ggtatcgctc tcaggtctgt
     9781 ttattcctgc gggtcccatt gttcaggtcc gcgataacaa cggcaaggtt cgtgaagaca
     9841 gcgataccga cgggcaggtg ttctataaag gcccgctggt ggtactggtt gaccgtttca
     9901 gtgcttcggc ttcagaaatc tttgccgcgg caatgcagga ttacggtcgt gcgctggttg
     9961 tgggtgaacc gacgtttggt aaaggcaccg ttcagcaata ccgttcattg aaccgtattt
    10021 acgatcagat gttacgtcct gaatggccag cgctgggttc tgtgcagtac acgatccaga
    10081 aattctatcg cgttaacggc ggcagtacgc aacgtaaagg cgtaacgcca gacatcatca
    10141 tgccgacggg taatgaagaa acggaaacgg gtgagaaatt cgaagataac gcgctgccgt
    10201 gggatagcat tgatgccgcg acttatgtga aatcaggcga tttaacggcc tttgggccgg
    10261 agctgctgaa ggaacataat gcgcgtatcg cgaaagatcc tgagttccag aacatcatga
    10321 aggatatcgc gcgcttcaac gctatgaagg acaagcgcaa tatcgtttct ctgaactacg
    10381 ctgtgcgtga gaaagagaat aatgaagatg atgcgacgcg tctggcgcgt ttgaacgaac
    10441 gctttaaacg cgaaggtaaa ccggagttga agaagctgga tgatctaccg aaagattacc
    10501 aagagccgga tccttatctg gatgagacgg tgaatatcgc actcgatctg gcgaagcttg
    10561 aaaaagccag acccgcggaa caacccgctc ccgtcaagta atatcaatca ggcacaagaa
    10621 attgtgcctg attttttaac agcggcaaga tgccgtaaat cagatgctac aaaatgtaaa
    10681 gttgtgtctt tctggtgact tacgcactat ccagacttga aaatagtcgc gtaacccata
    10741 cgatgtgggt atcgcatatt gcgttttgtt aaactgaggt aaaaagaaaa ttatgatgcg
    10801 aatcgcgctc ttcctgctaa cgaacctggc cgtaatggtc gttttcgggc tggtactgag
    10861 cctgacaggg atacagtcga gcagcgttca ggggctgatg atcatggcct tgctgttcgg
    10921 ttttggtggt tccttcgttt cgcttctgat gtccaaatgg atggcattac gatctgttgg
    10981 cggggaagtg atcgagcaac cgcgtaacga aagggaacgt tggctggtca atactgtagc
    11041 aacccaggct cgtcaggcag ggatcgctat gccgcaagtg gctatctacc atgcgccgga
    11101 catcaacgct tttgcaaccg gtgcgcgccg tgatgcctct ctggttgctg tcagcaccgg
    11161 tttgctgcag aacatgagcc cggatgaagc cgaggcggta attgctcacg aaatcagcca
    11221 catcgccaat ggtgatatgg tcaccatgac gctgattcag ggcgtggtga acaccttcgt
    11281 tatctttatt tcccgtattc tggcgcagct tgccgcgggt tttatgggcg gaaatcgtga
    11341 tgaaggtgaa gagagcaacg gcaacccgct gatctacttt gcggttgcaa cggttctgga
    11401 actggtgttt ggtattctgg cgagcattat caccatgtgg ttctcgcgtc atcgtgaatt
    11461 ccatgctgat gccggttcgg caaaactggt tggtcgcgag aaaatgattg ccgcgctgca
    11521 gcgcctgaaa accagctatg aaccgcaaga agcaaccagc atgatggctt tctgcattaa
    11581 tggtaagtcg aaatcgctca gtgagttgtt catgactcac ccgccgctgg ataaacgaat
    11641 tgaagctctg cgtacgggtg aatacctgaa gtaatatgaa gtaaatacta aaaagtgcgt
    11701 cctgatcg
//
LOCUS       DAJVUY010000135        11618 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.135, whole genome shotgun sequence.
ACCESSION   DAJVUY010000135 DAJVUY010000000
VERSION     DAJVUY010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11618
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.135"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(51..1037)
                     /locus_tag="OQQ72_003209"
                     /pseudo
     CDS             complement(51..1037)
                     /locus_tag="OQQ72_003209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310582.1"
                     /note="PtrB; oligopeptidase that cleaves peptide bonds
                     following arginine and lysine residues; incomplete;
                     partial in the middle of a contig; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
     gene            complement(1246..1905)
                     /locus_tag="OQQ72_003210"
     CDS             complement(1246..1905)
                     /locus_tag="OQQ72_003210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HCS2012847.1"
                     /translation="MANWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(2232..2588)
                     /locus_tag="OQQ72_003211"
     CDS             complement(2232..2588)
                     /locus_tag="OQQ72_003211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HCS2012848.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(2655..2949)
                     /gene="yebG"
                     /locus_tag="OQQ72_003212"
                     /pseudo
     CDS             complement(2655..2949)
                     /gene="yebG"
                     /locus_tag="OQQ72_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein YebG"
     gene            3083..4261
                     /gene="purT"
                     /locus_tag="OQQ72_003213"
     CDS             3083..4261
                     /gene="purT"
                     /locus_tag="OQQ72_003213"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HCS2012849.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEERLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(4317..4958)
                     /gene="kdgA"
                     /locus_tag="OQQ72_003214"
                     /gene_synonym="eda"
     CDS             complement(4317..4958)
                     /gene="kdgA"
                     /locus_tag="OQQ72_003214"
                     /gene_synonym="eda"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS2012850.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(4995..6806)
                     /gene="edd"
                     /locus_tag="OQQ72_003215"
     CDS             complement(4995..6806)
                     /gene="edd"
                     /locus_tag="OQQ72_003215"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HCS2012851.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(7041..8516)
                     /gene="zwf"
                     /locus_tag="OQQ72_003216"
     CDS             complement(7041..8516)
                     /gene="zwf"
                     /locus_tag="OQQ72_003216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HCS2012852.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            8854..9723
                     /gene="hexR"
                     /locus_tag="OQQ72_003217"
                     /gene_synonym="yebK"
     CDS             8854..9723
                     /gene="hexR"
                     /locus_tag="OQQ72_003217"
                     /gene_synonym="yebK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HCS2012853.1"
                     /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA
                     NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA
                     MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS
                     DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKQLLNLSDDR"
     gene            9851..11293
                     /gene="pyk"
                     /locus_tag="OQQ72_003218"
     CDS             9851..11293
                     /gene="pyk"
                     /locus_tag="OQQ72_003218"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HCS2012854.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(11353..11571)
                     /locus_tag="OQQ72_003219"
     CDS             complement(11353..11571)
                     /locus_tag="OQQ72_003219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012855.1"
                     /translation="MEYQADYYITINDSIKTWVQTQYSKDSGLPMAVIGHSVAEEAGM
                     RRLASYLDLHSGYPCIHFTGGCDYDWIE"
BASE COUNT         2821 a         2992 c         2900 g         2905 t
ORIGIN      
        1 ctgctcaaaa aaagaacaaa tggtagtgtc cgctattgcc agtacacctc aaccagccag
       61 tcggtaaaca gcgtaaaccc ttccagcatg atgttttcgc gtggcggaat taactcttcc
      121 cactgttgct catcacgcag gcgggtacgg tataagccaa agtttttgcc gtggcggttg
      181 gaacgcagat aaaaccgatg ctggtagtga tcaaggctgt attcgtgatc tttgcggcgc
      241 ggcagaaaaa caaacggctc ggcatcggcc atttccgcgt ccagcaggcg aacttcactg
      301 gtggtggcgc tggccaaatg aatgactaca tagtgcttcg aggtcgtttt atgcaggctg
      361 acgtaatagg tatcgtcttt ttcttcgtag atcagtttat cttgcgatgc tggcgtaccg
      421 atggcgtgac gccagacctg ataaggcagc agcgtcaccg gatgcttgcg aacatagtag
      481 aaagtccagg agtcatttgc ccagacaaag ctgggttcaa cgttatccag cagttccggg
      541 taccagttac cagtttccag attacgaaaa cgaatgccgt actggcgtcg ggaaagaaaa
      601 tcttctgcca gcgccataat ggtgttatcg ggcgtaatcg ccattccgcc catcgaataa
      661 aactcactat gagctgcgcg cttattggca tcgagcaatg tttcccactc atcccactct
      721 tcactgaatg ccgattgacg ctggtagata gcatattcac agcctggttc ataaatatgc
      781 cgatagcggt agccattttt gatgtagggc gcagaaactt ctcgttgcgg aatgcggtcg
      841 atgatttcct ttaagatgcg atcctgcaag gcttgttgtg aggccatcac ccgatgaccg
      901 taactatttt cttgttgcag gtagtccagg acttctggct gagaacgcgt atcgtcccgc
      961 agccagtagt aattatcgat gcgcgtatcg ccatgaagcg tcatggcgtg gggaatgcgg
     1021 gcggcttttg gtagcatgtt attgttcttt ctggttgaaa catcttataa gggtggcaaa
     1081 actcaccggg gatgcaagcg aaacagggga gtcattgctt agatgatgac aggtaatggc
     1141 gcggatatcg aatgttatgc agacagagaa aatcagcctg ttcaaatggc tgtgcgattc
     1201 tggatagccc gaaatagtca acttcaggct atccagagag cggaattatt ccgccaaagt
     1261 gcgtttttgc tgttcgagat cgcgttcaat gccgtcacga acatcctggg ggattttcag
     1321 cgcgtcaccc agtgcattca ggtaactgcg ttccataaaa tggtcaatat caatagccgc
     1381 gcaactcagg aaatagattt ccagcgcctc ttcttcattg cggaccccgg tagccaagcg
     1441 ttgtggatcc agcggttgtt cgattgcctg ctcaatgagt acacgcccct gctcttccac
     1501 gccggcttca cgcaattgct ggtcgattgc cgcacgttct ttggcatcaa tatgaccatc
     1561 acttttagcg gcaaagacca gcgcaaggat caaacgttct gtacgctcat ccagcggcgt
     1621 actttgcgcg ccaaactgcg gttcgtcctg atgcgccgcg cgaattttat ctttgtattt
     1681 attccacagc accgtacccg ctaccgctcc gccgccaacc agtaacgcgt tggtgccata
     1741 tttcgtaaga agtttacgtg ctgatttatt tgcgaccagc agcccagcca gtccgcctaa
     1801 tgcgcctggc actaacagtt tgcccaatcc ctgatccgca gacgaggaga tagaagaact
     1861 gctttgccca agcagggatt gcagttgatt taaccagtta gccatatttg ctcctcaata
     1921 accattttta gtgcctgtag catagcggat gaggatgtca gaaaatgtat atcgagacaa
     1981 aagatgcgca aataagcggg gcggtaggcc gttattcaaa gaaattcgcg ccaggtaagg
     2041 tatttactgt atatcaggtg ataagggtat tttaggtgaa agtagtttgt cgttttgagt
     2101 ggcattgttt gatgctgatt gcccgatgcg acgctgttgc gtcttctcag gcctacgatt
     2161 gtggtgcgtt ctggggcgga caaggcactc gcgccgcatc cgccaacggt caatcgaatt
     2221 atcagaagcc attaacgccg ctgatattcc gccattcccg ctttgcagtc cacgctgacc
     2281 tggtaatgaa tatcggcact tttaccacgc acggttagcg gtactgacca tttatcatct
     2341 ttaccctgaa tgtcctgcaa actgacccaa gccacgggat cggcctgacc gacaattttt
     2401 tgatcatctg cccaacgcgc cacgcgattt tgttgataat cacgttttac gctcgcggca
     2461 attccggcag catccagacc ttcacacttt gggaaagtga ccgacttgct ggtttcatta
     2521 ttggcagcga aaactgatgc gcaggcagaa accaacaaca gccctaaaaa cgcccctctt
     2581 tttttcatgt ttttctccat agcacaatga ttcaggagaa agcatggtac aaattgtcag
     2641 gagcgcaagt tgcttcaggc cgcgtgtgag gcatcttcct cttcggattc agcaccgacg
     2701 acctgtgggt ggggacggta atttgccggt tttcagaatg gtgctcagca catctttttg
     2761 ttctgccagc catagcgaaa gggcttcacg ttgctcgtct tccatttgca ctggagaatt
     2821 agtcagccag gtgtcaagca gatccgccgt atcaagcatt ttgtcataag catcggcttc
     2881 ctttttgctg gtaaacgaca ttttctcttc gccctcacga atgactacgt atttaacttc
     2941 aaccgccatt tgcagcctct cataataact gtgattttat acagtatatt tcttttcggt
     3001 tgagaaatca aaatcaacaa taaagacaca cgcaaacgtt ttcgtttata ctgcgcgcgg
     3061 aattaatcag gggatattcg ttatgacgtt attaggcact gcgctgcgtc cggcagcaac
     3121 tcgcgtgatg ttattaggct ccggtgaact gggtaaagaa gtggcaatcg agtgtcagcg
     3181 tctcggcgta gaggtgattg ccgtcgatcg ctatgccgac gcaccagcca tgcatgtcgc
     3241 gcatcgctcc catgtcatta atatgcttga tggtgatgca ttacgccgtg tggttgaact
     3301 ggaaaaacca cattatatcg tgccggagat cgaagctatt gccaccgata tgctgatcca
     3361 acttgaagag gaaagactga atgttgtccc ctgcgctcgc gcaacgaaat taacgatgaa
     3421 tcgcgagggt atccgtcgcc tggcggcaga agagctgcag ctgcccactt ccacttatcg
     3481 ttttgccgat agcgaaagcc ttttccgcga ggcggttgct gacattggct atccctgcat
     3541 tgtaaaaccg gtgatgagct cttccggcaa ggggcagacg tttattcgtt ctgcagagca
     3601 acttgctcag gcatggaagt acgctcagca aggcggtcgc gccggagcgg gccgcgtaat
     3661 tgttgaaggc gtcgttaagt ttgacttcga aattaccttg ctaaccgtca gcgcggtgga
     3721 tggcgtccat ttctgtgcac cggtaggtca tcgccaggaa gatggcgact accgtgaatc
     3781 ctggcaacca cagcaaatga gcccgcttgc ccttgaacgt gcgcaggaga ttgcccgtaa
     3841 agtggtgctg gcactgggcg gttatggtct gtttggtgtc gagctgtttg tctgtagtga
     3901 tgaggtgatt ttcagtgagg tctcccctcg tccacatgat accgggatgg tgacgttaat
     3961 ttctcaagat ctttcagagt ttgccctgca tgtacgtgcc ttcctcggac ttccggttgg
     4021 cgggatccgt cagtatggtc ctgcagcttc tgccgttatt ctgccacaac tgaccagtca
     4081 gaatgtcacg tttgataatg tgcagaatgc cgtaggcgca gatttgcaga ttcgtttatt
     4141 tggtaagccg gaaattgatg gcagccgtcg tctgggtgtt gcgctggcga ccgctgagag
     4201 tgttgttgac gccattgaac gcgcgaagca cgccgccgga caggtaaaag tacagggtta
     4261 aacccggcaa aaaaacgcta caaaaatgcc cgatcgtaga tcgggcgttt tgacttttac
     4321 agcttagcgc cttctacagc ttcacgcgcc agcttagtaa tgcggtcgta atcgcccgct
     4381 tccagcgcat ctgccggaac cagccaggaa ccaccgatgc acagcacgct tttcagcgcc
     4441 aggtagtcac ggtagttagc cggagaaata ccacccgtcg ggcagaaacg gacctgggag
     4501 aacggacccg cgatcgcctg cagggctttc acgccgccgt tagcttcagc cgggaagaat
     4561 ttgaactctt tcaaaccgta gtccataccc agcatcagtt cggaaacagt gctgatcccc
     4621 ggaattagag gaatagtccc ttcggtagca gctttcagca gcggctcggt cagacccggg
     4681 ctaattgcga actgtgcacc cgcttcagtg acttctgcca gctgctgtgg attcagcacc
     4741 gtaccggcac ccacaatcgc ttcaggcact tctttggcga tagcacggat agcgtcaact
     4801 gcacactcgg tacgcagagt cacttccaga acgcgcaccc caccagcaac caacgctttt
     4861 gccatcggca ctgcgtgttc cagttttttt accacgataa ccggtacaac cgggccggtg
     4921 gtcaggattg attctgcact tgttttccag tttttcatca gagttttctc tcgcctgatt
     4981 acaaatttgt cgtcttaaaa agtgatacag gttgcgccct gttcggcacc ggacagtttt
     5041 tcacgcaagg cgctgaataa ttcacgtcct gtccccacgc gtgacgcgct caggtcagga
     5101 atgtgcggtt cgcgagcagc cagttccgct tcgtctacca gcagcgtcag ttcgcctgtc
     5161 tgtccattca cacgaatgat gtccccgtcg cgcacttttg ccagcagccc gccatcgtag
     5221 gcttctggtg ttacgtggat agctgacggc actttacctg aagcgccgga gagtcgtcca
     5281 tcggtaacta acgcaatttt gaaacaccgg tccaataata caccaagtgg cggcatgagt
     5341 ttatgtaatt ctggcattcc gttcgctttt ggcccctgat gacggacaac aacgacacaa
     5401 tcgcggtcca gcaaacccgc ttcaaaggcc ggcataacgt catgctggct ttcaaaaaca
     5461 accgctggcg cttcaatcac ctggttctca accggcacgg cagaggtttt cataaccgca
     5521 cggcccaggt taccgcttaa cacttttgtc ccaccatgat gagagaaagg ttgttcgaag
     5581 gaagcgatca cattgctgtc gagtgatttt tccgcccctt cccgccagtc cagttcacca
     5641 ttattcagcc atggttcaag ggtataacga gacagaccaa agcctgccac cgtattgaca
     5701 tcttcatgca gcaggcctgc tttgagcagt tcacgcacca gaaccggtac gccacctgcc
     5761 gcctggaagt ggttaatatc ggccggaccg ttcgggtaga gacgtgccat cagcggtaca
     5821 acatcagaaa ggtcagagaa gtcatcccag ttaatctgaa taccggccgc gcgcgccatc
     5881 gccaccaggt gcatggtgtg gttagtggaa ccaccggtcg ccagcagtgc aacgataccg
     5941 ttcaccacca ctttctcatc gatcatctta ccgatcggca tccattcatt accattaccg
     6001 gtcatgcgtg taacctgacg cgcagcggca gcggtcaaag catcgcgcag cggagaatcc
     6061 ggatgaacaa aagaagagcc tggcgactgc atccccataa attccaccac catctggttg
     6121 gtgttggcag taccgtagaa agtacatgtt cccggcgcat ggtaagacgc ggcttctgac
     6181 tccagtaagg ccatgcggtc cactttacct tcggcataaa gctggcgaat acgcactttt
     6241 tctttatttg gcaaaccgct tgccatcggt ccagacggca caaacaccgc aggcaaatga
     6301 ccaaacgaca gggctgccat cgtcagaccc gggacaatct tgtcgcacac accgaggaac
     6361 agagcaccat caaacatgtt atgggacagc cccaccgccg cagacatcgc tatcacttcg
     6421 cggcttagca gcgacaattc cattccatcc tgcccctggg tgacaccatc acacatcgcc
     6481 ggaacaccgc ccgcaacctg accaaccgca ttcgcttcat gcagggcttt acgaatgatt
     6541 tctggatagt gttcataagg ctggtgcgcg gagagcatgt cgttatagga ggtgatgatg
     6601 gcgatattgt tacgcaacat gcttttcaaa gaggctttgt cttctggctg gcaggcagcg
     6661 aaaccgtgtg ccaggttacc gcatgccaac tgcgaacgat gaacggtcga cgttttcgct
     6721 tgttctatcc gggcgagata agcagagcga gtctcgcgcg aacgttcaat gattcgattt
     6781 gttacgcgta acaattgtgg attcataaag gctcctgaaa ttgagttgtc agagcaggat
     6841 gattcacaac gcgtttcatt cagaggattt atgagtgaaa cgcctgtaac cggagctcat
     6901 agggcaaaaa cgtttcagtc agtgtaataa aaaaagcctc gtgggtgaat ccgcacgagg
     6961 cctgaaagtg taaaaattgt tctacaatct gtgcaagatc atgttaccgg taaaataacc
     7021 ataaaggata agcgcagata ttactcaaac tcattccagg aacgaccatc acgggtaatc
     7081 atcgccaccg aggcaacggg tccccaggtt ccggcctgat acggtttcgg cgcatcattg
     7141 tccatcgccc acgcctcagt aatggagtct acccatttcc aggcttcttc cacttcatca
     7201 cgacgtacaa acagtgcctg aataccacgc atggtttcca gcagcagacg ttcataggca
     7261 tccgccagat gcgtctgatt aaaggtttct gaatagctca gatccagctt ggtgatttgc
     7321 aggttatgtt tgtggtcaag gccaggaact ttattcagta cctggatatc cacgccttca
     7381 tcaggttgca gacggatagt cagtttattc tgcggcagat cctgccacga ctctttaaac
     7441 agattcagtt caggtgtttt gaaatagacc acgacttcag aacatttggt cggcagacgt
     7501 ttaccagtac gcaggtagaa tggcacaccg gcccagcgcc agttatcaat gtcgacgcgg
     7561 atcgccacga aggtttctgt attgctgctc ttgttcgcac cctcttcttc cagatatccc
     7621 ggcacttttt tgccctgggc gaagcccgca gtatattgcc cacgtacggt tttttcgcgt
     7681 acgttggagc ggtcgatgcg gcgcagggac ttcagtactt tcactttttc atcgcggatg
     7741 ctgtctgcgc tcaggtcaga tggcggagac atcgcaatca tgcagagaat ttgtagcagg
     7801 tggttctgaa tcatgtcacg catctgaccg gctttatcaa aatagcccca gcgcccttcg
     7861 atccccactt cttctgccac ggtaatctca acatgatcaa tggtgcgatt gtcccagtta
     7921 ttcacaaaca gggagttagc aaaacgcagc gccaacaggt tcagcaccgt ttctttacca
     7981 agatagtggt cgatacggta aacctggcac tcctcgaagt attcgccaac ctgatcattg
     8041 atttcctgcg aggtcgccag cgacgtcccc agcggtttct ccatgactac gcgtgccggt
     8101 ttagcattca gttttgcctc gccaagccct ttgcaaattg cgccaaaagt gctgggcggc
     8161 atggcaaagt agttaatggt gatacgattt ttttgatcca gcatcgcgcc gagacggttg
     8221 aatgcagcag tgtcattgac atcgagatta caaaaatcca gacgtgcact cagggtgtcc
     8281 cataaacctt catcaatggt ttctttcatg aaagtttcga gcgcctcgcg gacaactttg
     8341 gtatatgccg ctttatccca gtcagcacgc cctacgccga taatccgggt gtccgggttg
     8401 agctgaccgg ctttttccag ttgatacagg gaaggcagca atttacgacg cgcaaggtcg
     8461 cctttcgcgc cgaaaatgac caggtcacag gcctgggctg tttgcgttac cgccatgtca
     8521 ttctccttaa gttaactaac ccggtactta agccagggta tacttgtaat tttcttacgg
     8581 tgcactgtac tgcttttacg agcttgcgaa aactgtaaac gcttatccac ccgtgcgatt
     8641 acgggaaaag cgcgcaaagc gcggcaaaac tgataaaaaa atcatcgttt tccattcggt
     8701 aaaaatctga cactgatcat gttatgaaaa aaaataacaa cttttttatc tgcttttgtc
     8761 attaacacgg cacacaggcg taatatctga caaaactgca tttcgatttc tttcagtgcg
     8821 gaaatcgtca ttacccgtga gtctctttac atcatgaata tgctggaaaa aatccagtct
     8881 cagctggaac atttgagcaa atcagagcgc aaagttgccg aggtcattct ggcttcgccc
     8941 gataacgcga tccattcgag tattgctgct atggcactgg aagccaatgt tagcgaaccg
     9001 acggtgaatc gtttctgtcg cagcatggac acgcgcggtt ttcctgattt taaacttcat
     9061 ctggcacaga gtctggcgaa tggcactccc tatgttaatc gcaatgtcaa tgaagatgac
     9121 agcgttgaat catacacagg gaaaatattt gagtccgcaa tggcaacgct tgatcatgtc
     9181 cgtcattcac tggataaatc tgccatcaac cgcgccgtcg acttgctcac tcaggcaaaa
     9241 aaaatcgcct ttttcggatt aggctcttca gccgccgttg cccacgatgc gatgaataag
     9301 ttctttcgtt ttaatgttcc ggtggtgtac tccgatgata tcgtgctgca acgcatgagt
     9361 tgtatgaatt gtagcgacgg agacgtggtg gtgctgattt ctcacactgg aagaacaaaa
     9421 aatctggtcg agctggcgca gctggctcgc gaaaacgacg caatggtgat tgccctcacc
     9481 tctgcgggta ccccgctcgc ccgggaagca acgctggcaa ttaccctcga cgtaccggaa
     9541 gatactgaca tttatatgcc catggtttct cgacttgcac agctgaccgt gatagatgtg
     9601 ctggcgacag gatttacttt gcgacgcggt gcaaaattca gagataactt gaagcgggtc
     9661 aaggaagcgc tgaaggaatc gcgttttgat aagcagttac ttaatttaag tgacgatcgc
     9721 taaaaacgac tgtcactgtc ctaatcttat acgacatccg aatgagatta atttatcgcc
     9781 atcgcggcgt tatttcattc ggatttcatg ttcaagcaac acctggttgt ttcagtcaac
     9841 ggagtattac atgtccagaa ggcttcgcag aacaaaaatc gttaccacgt taggcccagc
     9901 aacagatcgc gataataatc ttgaaaaagt tatcgcggcg ggtgccaacg ttgtacgtat
     9961 gaacttttct cacggctcgc ctgaagatca caaaatgcgc gcggataaag ttcgtgagat
    10021 tgccgcaaaa ctggggcgtc atgtggctat tctgggtgac ctccaggggc ccaaaatccg
    10081 tgtatccacc tttaaagaag gcaaagtttt cctcaatatt ggggataaat tcctgctcga
    10141 cgccaacctg ggtaaaggtg aaggcgacaa agaaaaagtc ggtatcgact acaaaggcct
    10201 gcctgctgac gtcgtgcctg gtgacatcct gctgctggac gatggtcgcg tccagttaaa
    10261 agtactggaa gttcagggca tgaaagtgtt caccgaagtc accgtcggtg gtcccctctc
    10321 caacaataaa ggtatcaaca aacttggcgg cggtttgtcg gctgaagcgc tgaccgaaaa
    10381 agacaaagca gacattaaga ctgcggcgtt gattggcgta gattacctgg ctgtctcctt
    10441 cccacgctgt ggcgaagatc tgaactatgc ccgtcgcctg gcacgcgatg caggatgtga
    10501 tgcgaaaatt gttgccaagg ttgaacgtgc ggaagccgtt tgcagccagg atgcaatgga
    10561 tgacatcatc ctcgcctctg acgtggtaat ggttgcacgt ggcgacctcg gtgtggaaat
    10621 tggcgacccg gaactggtcg gcattcagaa agcgttgatc cgtcgtgcgc gtcagctaaa
    10681 ccgagcggta atcacggcga cccagatgat ggagtcaatg attactaacc cgatgccgac
    10741 gcgtgcagaa gtcatggacg tagcaaacgc cgttctggat ggtactgacg ctgtgatgct
    10801 gtctgcagaa actgccgcag ggcagtatcc gtcagaaact gttgcagcca tggcgcgcgt
    10861 ttgcctgggt gcggaaaaaa tcccgagcat caacgtttct aaacaccgtc tggacgttca
    10921 gttcgacaat gtggaagaag ctattgccat gtcagcaatg tacgcagcta accacctgaa
    10981 aggcgttacg gcgattatta ccatgaccga atcgggtcgt accgcgctga tgacctcccg
    11041 tatcagctct ggtctaccaa ttttcgccat gtcgcgccat gaacgtacgc tgaacctgac
    11101 tgctctctat cgtggcgtta cgccggtgca ctttgatagc gctaatgacg gcgtagcagc
    11161 tgccagcgaa gcggttaatc tgctgcgcga taaaggttac ttgatgtctg gtgacctggt
    11221 gattgtcacc cagggcgacg tgatgagtac cgtgggttct actaatacca cgcgtatttt
    11281 aacggtagag taatctcacc tgccccggcc gctgatggcc ggggtattta gcaacacata
    11341 aattaggact acttattcaa tccaatcata atcacagccc cctgtaaaat gaatacaggg
    11401 atagcctgaa tggagatcta aatagcttgc aagacgtcgc atacccgctt cctctgcaac
    11461 actatgtcca ataactgcca tcggtaagcc actatctttg gagtattgtg tctgcaccca
    11521 tgttttaatt gaatcgttaa tcgtaatata ataatcagcc tgatattcca tatattgtat
    11581 tggatcacaa aaacagcctg ccccaatgcc aacagttc
//
LOCUS       DAJVUY010000136        11513 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.136, whole genome shotgun sequence.
ACCESSION   DAJVUY010000136 DAJVUY010000000
VERSION     DAJVUY010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11513
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.136"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            101..307
                     /locus_tag="OQQ72_003220"
     CDS             101..307
                     /locus_tag="OQQ72_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS2012856.1"
                     /translation="MEAIRKIIFRQEVKKIIHIKADSTLQSMINAGEFPQGFRVGLRR
                     RGWYEDDVLAWQKEREQEARGTAA"
     gene            322..987
                     /locus_tag="OQQ72_003221"
     CDS             322..987
                     /locus_tag="OQQ72_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001329530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012857.1"
                     /translation="MTNTKKAAPIWSRLSEQLTRCALCVYDPKHKHGDDSRYQAGGQC
                     NQSGSVRCHTCNERFSLYSLRNCSRAKAHGANLSDSCSIFLRRLFRAGDNVLVNSLSV
                     IVLSCIAMRRNTSHHGADSFYPLGSMPRRFSSVRPNSLSQLARLMPSLCASLSNCSFS
                     SGEIRILNCGDCPSPLGLLSRLIIDKWSPIELAFPLLGGHLNTRALKKAKPRKCHYHS
                     QGF"
     gene            1013..1213
                     /locus_tag="OQQ72_003222"
     CDS             1013..1213
                     /locus_tag="OQQ72_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000226783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS2012858.1"
                     /translation="MVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARS
                     RCPSGCVAVFAARIRQGETYAQ"
     gene            1203..1424
                     /locus_tag="OQQ72_003223"
     CDS             1203..1424
                     /locus_tag="OQQ72_003223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001372127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012859.1"
                     /translation="MHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFAL
                     ECIRYIATRSLNDAKNILVADCENGGGYA"
     gene            1417..1650
                     /locus_tag="OQQ72_003224"
     CDS             1417..1650
                     /locus_tag="OQQ72_003224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012860.1"
                     /translation="MRDDRFNSLKQEFPGVPDDAADALSSMPELIRAAFFLLSTREYK
                     STGLDVLNIAADYAEYVAEARYRRKFPEDVSHA"
     gene            1643..1876
                     /locus_tag="OQQ72_003225"
     CDS             1643..1876
                     /locus_tag="OQQ72_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012861.1"
                     /translation="MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR
                     IATALITLLEPVIMELQEIDLLHDRYKEQHTGE"
     gene            1882..2181
                     /locus_tag="OQQ72_003226"
     CDS             1882..2181
                     /locus_tag="OQQ72_003226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS2012862.1"
                     /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGTVMIKGVEERRVTY
                     RREGYEYDCVMPVYQFRRDFSLVQTAPHNVPTSNARARANIQKLKTMINGFRGKK"
     gene            2178..3578
                     /locus_tag="OQQ72_003227"
     CDS             2178..3578
                     /locus_tag="OQQ72_003227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS2012863.1"
                     /translation="MKSAPNLKKQPYDKMTEVIIFAGSDAWAHAKQWQEQDGRLAGDN
                     VPPVVLADDQLDELADLRIIDEGRYCVRLYKAGHIRPSNINAIAHKLAAAGVTDANYY
                     PEGMHSHMRENWREYLERVRGKEPVEEKNHQRKTTLPMSVGSTGYDTQLDYVVKGIIP
                     AVSLCSIYGASGSYKSFLAGSWACHVATGRQWGGRRVAHGAVLYVVGEGGIGVPRRVK
                     AWEVVHDEQVKNLYLVNRPIFPAAPLDVDEMVIAARQVERETGKPVRMIILDTLARCF
                     GGNDENDSRDMGAFIRGCDELKRRTGATVLVVHHSGKDETKGARGSSAFRASLDAEYR
                     IRREDAGSKALVISCTKMKDAEELKEAAYDLRVVELFTDADGELITSLVVVDDPRPPV
                     ELERIEEAGNKTENHTALWGCIRSRTQNGDKCTIPLLRDDMKKLGYEMKNFRRWLYKL
                     EKDGVISIDGDDVAPL"
     gene            3779..4030
                     /locus_tag="OQQ72_003228"
     CDS             3779..4030
                     /locus_tag="OQQ72_003228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012864.1"
                     /translation="MTQKRRDRTEPKYKALDMTEHTLKVAIRTIDRHTREGYAKEHPD
                     LISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVEL"
     gene            4027..4437
                     /locus_tag="OQQ72_003229"
     CDS             4027..4437
                     /locus_tag="OQQ72_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS2012865.1"
                     /translation="MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQ
                     ATLWLSVIAFGKQADFLAKHQKGDVASVSGTMQVSQWTGQNGETRQGWQVIADSVISA
                     RAARPGGNRRKTTGTQGNQPPAGGDDPYGDDISF"
     gene            4448..4720
                     /locus_tag="OQQ72_003230"
     CDS             4448..4720
                     /locus_tag="OQQ72_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HCS2012866.1"
                     /translation="MVHDRIAEELEAKGFYRRAAARWGEVMQLVETDKERHHITMRRL
                     ECSRKAQRAPEPPDNFGDLKKAVDRTYAEMGIDGAGDEIWRNYQDS"
     gene            4846..5070
                     /locus_tag="OQQ72_003231"
     CDS             4846..5070
                     /locus_tag="OQQ72_003231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309616.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012867.1"
                     /translation="MPMKFDEILKQRDKYHADNMETMSINDYRAFLETGALIEKDQHG
                     FVRCALSGEMLAVNPEQIDALIEFLKEIRD"
     gene            5322..5528
                     /locus_tag="OQQ72_003232"
     CDS             5322..5528
                     /locus_tag="OQQ72_003232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000796968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012868.1"
                     /translation="MAEEKKGGVSVYISPEIVEVLKQRHKKNYEAGVAAGLDPLMTPE
                     PSIGSLVRSYLLAALGMHKNYGGE"
     gene            5528..6583
                     /locus_tag="OQQ72_003233"
     CDS             5528..6583
                     /locus_tag="OQQ72_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS2012869.1"
                     /translation="MAGKATALNTNQLFMYLNRGDIADFKFSPLFTTLFFPNVATFST
                     QNIMLDTLDIEEVTMSAFCSPMVGSQVQRDKGYETSTIKPGYMKPKHEIDPTKTIMRM
                     AGEDPAQLNDPTYRRMRLITGNMRRQINAIKARVEWLAVNAVTTGKNIIEGEGIERYE
                     IDWKIPEKNIIEQSDGKKWSEHDKDIYDPIYDIELYADQAGCPANVMIMGAEVWRTLR
                     SFKKFRELYDLSRGSESAAEMACKNLGEVVSFKGYLGDIALIVYSGKYTDSDGTEKYF
                     LEPDLLVLGNTNNKGLVAYGAIMDQEAVRTGATQNMYYPKNWIEDGDPAIEYVQTHSA
                     PQPVPADIRKFVTVKIG"
     gene            6620..6898
                     /locus_tag="OQQ72_003234"
     CDS             6620..6898
                     /locus_tag="OQQ72_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004977729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS2012870.1"
                     /translation="MQAVSRYQRHWYILPLMLVDNGEFKPWDGQESGKAVYLTSYLVD
                     TSKQKSAQCYKTGIFNIAAVNWPESVDTDAKKCAAFAGSGVSVQPLAR"
     gene            6911..7324
                     /locus_tag="OQQ72_003235"
     CDS             6911..7324
                     /locus_tag="OQQ72_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HCS2012871.1"
                     /translation="MATNESIMALPLASKFKAEARAMADRGLSTYEAVYQLNKLEEQD
                     KPRADAIMALHEHKDYQPLLRAMANVPCIDVDTAKNILNMTIEQERPKVAPELTAAFE
                     NFMDMHSPQTVSAGMAYDGRNPGDDGDIDRILKTI"
     gene            7486..7920
                     /locus_tag="OQQ72_003236"
     CDS             7486..7920
                     /locus_tag="OQQ72_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000565611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012872.1"
                     /translation="MIDKACFVSQQEIAEHFKVNRTTIRAWTKQGMPYLNADRGKSGG
                     YHIGHTLLWSSGKSRLEAIRYHVETSALEKIMFARLLSSERDEYSSEETEHRFDEGLQ
                     IYGYSPEDVSKARNKMAGFLAGWRHAVSVRRASMEQSADTEQ"
     gene            8201..8482
                     /locus_tag="OQQ72_003237"
     CDS             8201..8482
                     /locus_tag="OQQ72_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012873.1"
                     /translation="MTEAEILGLIRRAGGISQQTDEQATQPDSVTAENYARVVAEVMR
                     RDGIQLNDVDMRNIRIRVLEMLAYNRRVALYRETEKITYHWKKPERLRR"
     gene            complement(9157..>11513)
                     /gene="yejO"
                     /locus_tag="OQQ72_003238"
     CDS             complement(9157..>11513)
                     /gene="yejO"
                     /locus_tag="OQQ72_003238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HCS2012874.1"
                     /translation="GGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYG
                     AANDPTIKGGRLIVEKDGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVME
                     AFGINRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATGV
                     DKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILD
                     EHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGTM
                     VNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSVW
                     AIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGNG
                     NFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLG
                     NAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVR
                     ERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIR
                     GLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMS
                     NGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVG
                     NTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAGT
                     PGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
BASE COUNT         3137 a         2753 c         2914 g         2709 t
ORIGIN      
        1 ggtgtatacc gtttaaaaac ggtgggaact gtttttaccc atatccgatg atttaccgta
       61 tttgtcaccg gaatacaccg gattcacaag gtaaatcacg atggaagcaa tcagaaaaat
      121 tatctttcgc caggaagtaa aaaaaattat ccacatcaag gcagacagca cgctgcaaag
      181 catgatcaac gccggagaat ttccgcaggg ttttcgcgtt ggtttacgcc gtcgcggatg
      241 gtatgaggat gatgtgttgg cctggcagaa agaacgcgaa caggaagcac gcggaacggc
      301 tgcttaacgg gtatcacaga tatgacaaac acgaaaaaag cggccccgat atggagccgc
      361 ctttctgaac aattaacccg ctgcgcctta tgtgtatatg atcccaaaca taagcacggg
      421 gatgatagcc gctatcaggc tggtgggcaa tgcaatcagt ctggttcagt tcgttgccat
      481 acctgcaatg agcgcttttc cctatactct ttaaggaatt gctcaagggc aaaagcacat
      541 ggtgcgaatc tttctgattc atgctctatc tttctgcgcc gtcttttccg tgccggtgat
      601 aatgttttgg tcaattcttt atcggtcatt gtgttgtcct gcatagcaat gcgccgtaat
      661 acctcacacc acggcgctga tagtttttat cctttgggtt ctatgccgcg ccgctttagt
      721 tcagtgcgcc ccaactcttt aagccagttg gctaggctta tgccgtcgct ctgtgcttct
      781 ttgtcgaatt gctcttttag ctctggagaa attcgcattc tgaattgtgg ggattgcccg
      841 tcccctttag ggcttttatc gcgtttgatt attgacaagt ggtcacctat tgaattagcc
      901 tttccattgt taggtggcca ccttaacaca agagcactta aaaaagcaaa gccccgcaag
      961 tgtcattacc actcgcaggg cttctaacca acaacgtaaa ctaggagccg ttatggttgc
     1021 cgtaaatcat ataccacacc ttgtacacac acaaacggcc tttgtgtggc gttttctggc
     1081 cctgagtgcc ggagaatctc aaatcatcca cgtaaccgcc tggacggaac gcgaagcgcg
     1141 tagccgttgc ccgtccggtt gtgttgctgt attcgccgcc cgtattcgtc agggggaaac
     1201 ctatgcacaa taaaaccaca ccgaacgcag cagccgccgc actcactacg ctgatgcacg
     1261 cgcttattga tattgaatgc actgcagagc ttgcgcaggg agaagaacag aaagaccgga
     1321 cacagttcgc cctggaatgt atccgataca tcgcaacgcg gtcgctgaat gacgctaaaa
     1381 atattcttgt tgctgattgt gaaaatgggg ggggttatgc gtgatgatcg ttttaattcc
     1441 ctgaaacagg aatttcccgg cgttcctgat gatgcggctg atgcgctttc gtcaatgcca
     1501 gaacttatta gagcggcttt tttcttactt tccacgagag aatataaatc aacggggctt
     1561 gatgtactga atatcgccgc cgattatgcg gaatatgtgg cagaggcgcg ttacagaaga
     1621 aaatttcctg aggatgtaag ccatgcgtga tatttaccac gaaacaatag accgcgcatt
     1681 tcttgcactt tctcacagtg aaaacatgct ggaaatattg cgcatatggc ttgaaacact
     1741 tggcgacaat gaacgcgaca aacaaaaatc aagaattgcc acggcattaa taacgcttct
     1801 tgagcctgta ataatggaac tgcaagaaat agatctattg cacgacagat ataaagaaca
     1861 gcacaccgga gaataaaaat aatgaaactt aaatattctg gcttaactgc cagtggcaac
     1921 actcacccta aatttacgcg cggtgatatt taccgcgacc agtacggcgg cacggtaatg
     1981 attaagggcg tggaagaacg gcgtgtaacc taccgccgtg aaggttacga atatgattgc
     2041 gtgatgcctg tttatcagtt ccggcgtgat ttttctctgg tacagaccgc gccgcataac
     2101 gtgcccacca gcaacgccag ggcacgggca aacatccaga agctgaaaac catgattaac
     2161 ggattcaggg gcaagaaatg aaaagcgcac cgaacttaaa aaaacagcct tacgacaaga
     2221 tgaccgaagt cattattttt gcgggtagtg atgcctgggc acatgcaaaa cagtggcagg
     2281 aacaggacgg gcgactggct ggcgataatg tgcctcccgt tgtgctggct gatgatcaac
     2341 tggatgaact ggcagacctg agaatcatcg acgaggggcg ctattgtgtc cggctgtaca
     2401 aggcaggcca catcaggcca tcaaatatta atgccattgc gcacaagctg gcggcggcgg
     2461 gtgtaactga tgcgaattat taccccgaag ggatgcacag ccatatgcgg gagaactggc
     2521 gcgaatacct ggaacgggtg cgcgggaaag agccggtgga agaaaaaaac caccagcgaa
     2581 aaaccacgct accgatgagc gttggatcta ccggatacga cacgcaactg gattacgtgg
     2641 ttaaggggat tattccggcg gtatcgctat gcagcatata cggggctagc gggtcctata
     2701 aatcattcct tgccggatcg tgggcgtgcc atgttgccac tggtcgccag tggggaggcc
     2761 gcagggttgc acatggtgcg gttctctatg tggttggtga aggcggtatc ggcgttccgc
     2821 gtcgtgtaaa agcctgggag gttgtgcacg atgagcaggt gaaaaatctg tatctggtaa
     2881 accgccccat ctttccggct gccccgcttg atgttgatga aatggttatc gctgcccgtc
     2941 aggtggagcg ggaaacgggt aaacctgtac gcatgattat tctggatacg ctggcgcgtt
     3001 gctttggtgg gaatgatgaa aatgattccc gtgatatggg ggcgtttatc cgtggttgtg
     3061 acgaactgaa acgacgcaca ggggccacgg tgctggtggt tcaccattcc ggcaaggatg
     3121 agacgaaagg cgcgcgcggt tccagtgcat ttcgtgcttc gctggatgct gaataccgga
     3181 tacgcaggga ggacgcagga agcaaagcgc tggttatctc atgcaccaaa atgaaggacg
     3241 cggaggaact caaagaagcc gcatatgact tacgcgtggt ggagcttttt accgacgctg
     3301 acggtgaatt aatcacgtcg ctggtggtgg tggatgatcc gcgccctcct gttgaactgg
     3361 agcgcatcga ggaggcaggg aacaagacgg aaaaccatac cgcgctatgg gggtgcatcc
     3421 gttcacgcac acagaacggc gacaagtgca cgatcccgct gttacgtgat gacatgaaaa
     3481 agctggggta tgaaatgaaa aacttccggc gctggctgta caagctggaa aaagatgggg
     3541 ttattagtat cgatggggat gatgtagcgc cgctataaaa gtgaggagca aaagcgaggg
     3601 ggatagaaag agggccaaaa ttagcccgct ctccctcact tttcgacctg tatacatcct
     3661 caaaagtgag gggtaaaaaa atacttataa aacacacaca tagaaaaacc gaaaatccca
     3721 actgcgacga agtgagacgc ttgaaaaagt gaggcgaaaa agtgagaggt tgcgagaaat
     3781 gacccaaaaa cgcagagaca gaacagagcc aaaatataaa gcgttagaca tgactgagca
     3841 caccttaaag gtggcaatca gaacgataga ccgccacacg cgggaaggat acgcgaagga
     3901 acatcccgac ctgataagcg cattcatgac cacggcggcg gcaaactttg ccacgctgac
     3961 agaacgggag attgccgaag cggaacaggt aacaaccatc aacgttaaaa ccggagaggt
     4021 ggaattatga cggcacagat agccgcttac gggcggctgg tggacgaccc gcaggtaaaa
     4081 cagaccagca agggcacacc gatgacgctg gcgcgtatgg cggtatcttt gccatgcagc
     4141 caggcacagg acggacaggc gacgttatgg ttatcggtca tcgcatttgg caaacaggcc
     4201 gacttcctgg ctaaacatca aaaaggcgat gttgccagcg tatccggcac gatgcaggta
     4261 agccagtgga ccggacagaa cggagaaacg cggcagggct ggcaggttat cgcagacagc
     4321 gtaatcagtg cccgcgcggc acgtccaggc gggaacagac gcaaaaccac aggcacacag
     4381 ggtaatcagc caccagcggg aggcgatgac ccttacggtg atgatatttc gttctgaggg
     4441 ggtgacgatg gtacatgacc gcatagcgga ggaactggag gcgaaaggct tttaccggag
     4501 ggcggcggcg cgatggggtg aagtcatgca gctggtggag acagacaagg aacggcatca
     4561 catcacgatg cgacggctgg aatgttcaag gaaggcacag agggcaccgg agccgccgga
     4621 taatttcgga gacctgaaaa aggcagtcga tcgcacttat gccgaaatgg gtatagatgg
     4681 tgctggtgat gaaatatggc gcaattacca ggacagctaa tcaaacagcc ggagaaatcc
     4741 ggcttttttg caccagttga aacggtatgg cgcattaccg ggttttcgtc acggtcaggc
     4801 atagttacta tctgaaacaa acagacacaa cagaggaaaa aaacaatgcc gatgaaattt
     4861 gatgagatat taaaacagcg tgataaatac catgctgaca acatggagac gatgagcatc
     4921 aatgattacc gcgcattcct ggagacgggc gcactgattg aaaaggatca gcatggtttt
     4981 gtgagatgtg ctctatccgg tgaaatgctg gcggtaaatc ctgaacagat agatgcattg
     5041 atagaatttc tgaaagagat cagagactga tccagcacac agcacacata gccggagcaa
     5101 tccggctttt ttgcgcccaa aaaaagcccg ataaggtcag agggttctta tcgggctttt
     5161 gcatatgagg tttttggatg cactggcgtt cgtgatcggg ataatcattt cataatttgc
     5221 aacataactc aatattattg cataaaatgc aattctgatt ataatcagga ctggataaac
     5281 atccagttat gattttttta gtcgaagagg aatttcttac tatggctgaa gagaaaaaag
     5341 gcggtgtttc ggtgtacata agccccgaaa tcgtggaggt gctcaagcag cgccacaaaa
     5401 aaaactatga ggctggcgtg gcggctggac tggatccgct gatgacgccg gagccgtcga
     5461 taggttcact tgtacgctct tatttacttg cggcgcttgg gatgcataaa aattatgggg
     5521 gtgaataatg gcaggcaaag caacggcact taacactaac cagcttttta tgtacctgaa
     5581 tcgcggggat attgcggatt ttaaattcag ccctctgttt accacgctgt ttttcccgaa
     5641 cgtggcgaca ttcagcacgc aaaacatcat gctggatacc ctggacattg aagaagtcac
     5701 catgtcggcg ttttgttcgc ctatggtggg tagccaggtt cagcgcgata aagggtacga
     5761 aaccagcaca atcaaacctg gctacatgaa gccaaagcac gaaatcgatc caacgaaaac
     5821 catcatgcgc atggctggag aagatccggc acagcttaac gaccctacct atcgccgtat
     5881 gcgcctgatt actggcaaca tgcgccgcca gataaacgcc attaaggcac gcgtggaatg
     5941 gctggcggtg aatgcggtaa cgaccggaaa aaacatcatt gagggcgaag gcatagaacg
     6001 ctatgaaatc gactggaaga taccggaaaa aaacatcata gagcagtccg acggcaaaaa
     6061 atggtccgag catgataaag atatttacga tccaatctat gacatcgaac tatacgcaga
     6121 tcaggcaggt tgccccgcca acgtcatgat tatgggcgct gaggtatggc gcacgttacg
     6181 cagctttaaa aaattccgtg aactgtacga tctttcccgt ggttcagaat ccgccgcaga
     6241 aatggcctgt aaaaacctgg gcgaagtggt gagctttaaa ggctatctgg gcgatattgc
     6301 tcttattgtc tattccggca aatacactga cagcgacggc accgaaaaat atttccttga
     6361 gcctgatttg ctggtcctgg gcaacaccaa caataaaggg ctggtggcct atggtgcgat
     6421 tatggatcag gaagcggtaa gaacgggcgc aacgcaaaac atgtactacc cgaaaaactg
     6481 gattgaggac ggcgatccgg cgattgagta cgtgcagaca cacagcgcac cgcagccggt
     6541 tccggcagat attcgcaaat ttgttaccgt caaaattggt taacggggga ttatatggac
     6601 actccatata ttgagttatt tgcaggcagt cagcaggtat caacgacact ggtacatttt
     6661 gccgctgatg ctggtggaca atggcgagtt taagccgtgg gatggtcagg aatctggcaa
     6721 ggctgtttat ctgacttcgt acctcgtgga cacgtcaaag cagaaatcag cacagtgtta
     6781 caagacgggg atattcaata ttgccgccgt taactggcct gagagcgtcg acaccgatgc
     6841 gaaaaaatgc gccgcctttg cgggttctgg cgtatccgtt cagccgctgg cccgataagc
     6901 agggggaacg atggcaacga atgaaagcat catggcgcta ccgctggcga gtaaatttaa
     6961 agccgaagcg cgggcaatgg ctgacagagg tttatcaacc tacgaggccg tatatcaact
     7021 caacaaactg gaagagcagg acaagccgcg cgctgatgcg attatggcgc ttcatgagca
     7081 taaagactat cagccgctgt tgcgtgcaat ggcaaacgtg ccttgtatcg atgttgatac
     7141 ggctaaaaac atcctgaaca tgaccataga gcaggaacgc ccgaaggttg caccagagct
     7201 taccgcagcc tttgaaaact ttatggacat gcacagccca caaaccgtat cagctggcat
     7261 ggcatacgat ggcagaaacc caggcgatga cggcgacatc gatcgcatac tgaaaaccat
     7321 ctgagacaag gccggagaaa tccggctttt ttgcgggtcc ttcctggaat tatggcccgt
     7381 tacggggcgg cgacctcgcg ggttttcgct atttatgacg tttttccgtg aaggtgacac
     7441 caccaccact tgattaatat ttaaccatgc agttaaggta acattatgat tgataaagct
     7501 tgttttgtaa gtcagcagga aatagctgaa catttcaagg ttaacagaac cactattcgc
     7561 gcatggacca aacaggggat gccgtatctt aatgcggatc gcggaaagtc tggcggttat
     7621 cacatcgggc atacattgct ttggtcttca ggtaaaagcc gtcttgaggc catcagatat
     7681 cacgtagaaa ccagtgcgct ggaaaaaatt atgtttgcca ggctgctttc atctgagcgt
     7741 gacgagtact ccagtgaaga aacagaacat cgatttgatg aaggtttgca gatttacggc
     7801 tattcaccgg aagatgtgag caaggcacga aataaaatgg ctggctttct ggctgggtgg
     7861 cgtcatgccg taagcgttcg ccgtgccagc atggagcaat cagccgatac agaacagtaa
     7921 agccgataac ttgttaatca ctcgcagcaa tgcatgtgat ttgtgcacac tttcggttaa
     7981 ctggttcgat gtccggtttt agtgtctgtt ttttgcgcat gtccggttca tggaaagcat
     8041 gtttttatat ttttcatatg gttaacttgt agagaaaccg gacatggatc ccgaaaaatt
     8101 ttcataaata gtgaaaacgc gcgaggtcgc cgccccgtaa cgggtccata attccaggaa
     8161 ggacccgacg acaccagaca atcagaacga taggtgcaca atgacagaag ccgaaatact
     8221 gggattaatc cgccgtgctg gtggaatcag ccagcagact gacgaacagg ccacgcagcc
     8281 ggacagcgtg acagccgaaa attatgcgcg tgttgttgct gaggtgatgc gccgtgatgg
     8341 tatccagctt aatgatgtgg atatgcgcaa catacggatc cgcgttcttg aaatgctggc
     8401 ctacaatcgc cgcgtggcac tgtatcggga aacggagaaa attacatacc actggaagaa
     8461 gccggagcgg ttgcggcggt aactggttga tattttcgaa attcgccagc ggcgaacatc
     8521 ggggaaacca gcctaacccg ttgatatttt cgggaacctc aaattgagga ggtcggaaac
     8581 ataacccgtc atattctgga tgctgataat taccacgcag cccattaagg cctaacccgt
     8641 tgattctttc ggaaacagcc attggcgtaa tccggcgcgg taacttgctg aacttaaagc
     8701 aaagcgcaaa attgcgctgg ctggtgggca tgatgccgat atggtgatcc ccataacgga
     8761 aatatccacc agcacggcaa cggcagaata gccacaacac agaaaaacca cgaatatggg
     8821 gtttttgtta tggcatgggc atgatgaccg cccctgctct gaatggtgga aatcaccacg
     8881 cagatcatcc accagcttcg tttttataaa ttaaacatcc gggaaaatcc gaccctgaat
     8941 tgtgcatttt ttcagcaaat cattttagtt atacgtttgg ttatacggtt taaaagttga
     9001 atcatataca ttattttaaa tcatgaagtt acacgctcaa ttaaactact ctcgtgaatc
     9061 ccaagaaaaa accaaccttt acggttggtt tttttatatc tgcaattaat ttgataaaca
     9121 gaccgtgaca catcacagcc tgtttatttt ctgttatcag aacgtccaga ccactcccgc
     9181 ctgagtattc cacggcgatt ctacccctgc gccattgcca tagctgactg acaaatgacc
     9241 gcttaacgtc ggggtaaacg atgaccttat cccagcctga taaacgccag gggttccagc
     9301 cacatcatta ttaaatttgc catcgtcatt aactttcaca tggttagaat cggcgtattc
     9361 ctgacgtacg gcggctttca gccagggttc cagcgtcgta ccattttgca ggtccatgtg
     9421 atagcttacc gccgttcccg cttcagcgcg taatatccgg gtatttccca catcagcgcg
     9481 catgccgttt gataacgtgt agtcctgacc atctgtggta aagccggtaa aggccagata
     9541 gggtctaaca ctccacaatc cgtcaaccca acggaacccg ctctcaacat gagcacccgc
     9601 gccgttacta ttgtaatcgc caaacgctgt tgccccatta ctcatcttgc catggatggt
     9661 gttggcaaaa cggtcaactt tcaccacccc atcaacatag gcaccgttct gatgctccca
     9721 accggcataa gcccccaggg tatagctatc gatattacct tttccgccgc gatcaaaacc
     9781 aatatcagaa tgagagtaac caaagaacaa gccgcgaatt gtactgcttt cttcacggga
     9841 gaaacggcta tcgataccga gcgtcaggcc cgtcaatgtt tgctcaaaac cagctcccgc
     9901 atcagtggtc acgttgttgc gggtgttaat tgccgaactc cacatcgccg tatcgtaact
     9961 aacgcttttt acgctaccaa gacgctcacg cacggtgtcc agttctgcat caaataccag
    10021 cggttgtgcg gccgccatat tcagcacatc agtggttgaa ggggtaattt gcgcgcgatt
    10081 ctctgccaaa ctccagctat ggttgccatt atccagcaag gtatattcat acgtaccgat
    10141 atcaacaacg cctccggcat tgcccaacgt aaatgcagca tcaccgccgc ccgttgttac
    10201 cagtgtaagg ctatctcctg ctgccgggct ggcaccggtg tccgtcacga atattttgaa
    10261 atcacctgtt gcctgaccgg tgacgttgag ctgatcgctc tgatgattag ccatatcggt
    10321 acgcatataa aaattgccgt ttcccgacag ggtattggtg gtcaacgtaa tgaaattttc
    10381 cgcacttgcc gtcactgatg aacgagtcac tggctcatcc atcataatca catttgcgtc
    10441 agacatcgca aggttggcta agttgaggag ggtgttttgg ttcgtcgtag tgatatcggc
    10501 aatgatggcc catacgctat tttcgagcga aacgtccgct ttgctggtat ccacggcacc
    10561 atgcgttcta aaagaagcgc cctcagaaac cactacctta cccaccaaca tagcgggtgc
    10621 ataatttatt tgcggcttca tgacctcaag aatgccatca ttccctctga ctgacacgtt
    10681 aaccattgtg ccagcccaga cattagcgcg gccattgttg ataaccatat tttcagagat
    10741 ggctttagag gaatacgtga tacttccatt ctggtctgat cgaccgagat catataccgc
    10801 atttgcctgc actttcgtac cagtatcctt tcccagcgat tgcatagtgg catgctcatc
    10861 aaggatagta tcaatggcct gcgtgtcctc cataacaatg agcccggaac catcatccag
    10921 ttcataattt tttgacacac catcttttat actaaattgg cctttactgt ttgtaccact
    10981 cacttccagc gcattcgttg agacaattaa ttttccgcct gcttttttat caacgccagt
    11041 tgcagtcccg ccatccataa cctccagtaa gccgccacta tctacagtag tattataagc
    11101 gaagtcattt tcttcaactc gcaaacttcc gccgttttcc aacagcatat tgttagcaat
    11161 accattcttg atttcgaact gaccgagacg gtttattccg aatgcctcca tgacccgcgt
    11221 gcttgcttta atagcaccgc ctgctttctg atctaccgca atcgctaatc ccccctcttt
    11281 aacctccagt aatcctccct tttcgatagc ggcaaggacg gtaatcccat ctttttcaac
    11341 gattaagcgc ccgcctttaa tcgtgggatc attcgctgcg ccataaacct gtagcacacc
    11401 attattgagg gtagtctggt ttgccgcgcc acccatttga acaatttgat aaccgtcatt
    11461 taatactgag tattctgcgg taccattcat ttcaatgtac tgataccctc cgt
//
LOCUS       DAJVUY010000137        11395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.137, whole genome shotgun sequence.
ACCESSION   DAJVUY010000137 DAJVUY010000000
VERSION     DAJVUY010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.137"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..911
                     /gene="gap"
                     /locus_tag="OQQ72_003239"
     CDS             <1..911
                     /gene="gap"
                     /locus_tag="OQQ72_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS2012875.1"
                     /translation="INDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVY
                     AEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNV
                     NDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRG
                     KDLRASRAAAENIIPHTTGAAKAIGLEIPELSGKLKGHAQRVPVKTGSVTELVSILGK
                     KATAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLV
                     KTVAWYDNEYGFVTQLIRTLEKFAKL"
     gene            complement(953..2393)
                     /gene="aldA"
                     /locus_tag="OQQ72_003240"
                     /pseudo
     CDS             complement(953..2393)
                     /gene="aldA"
                     /locus_tag="OQQ72_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            complement(2548..3390)
                     /locus_tag="OQQ72_003241"
     CDS             complement(2548..3390)
                     /locus_tag="OQQ72_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001027928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HCS2012876.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVLYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRRTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLRQKLPVCEPLV
                     CKRA"
     gene            complement(3662..7564)
                     /gene="hrpA"
                     /locus_tag="OQQ72_003242"
     CDS             complement(3662..7564)
                     /gene="hrpA"
                     /locus_tag="OQQ72_003242"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HCS2012877.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSGTIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            7765..8370
                     /gene="azoR"
                     /locus_tag="OQQ72_003243"
     CDS             7765..8370
                     /gene="azoR"
                     /locus_tag="OQQ72_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HCS2012878.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(8421..9737)
                     /locus_tag="OQQ72_003244"
     CDS             complement(8421..9737)
                     /locus_tag="OQQ72_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HCS2012879.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWPFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWPVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGAFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(9727..11395)
                     /locus_tag="OQQ72_003245"
                     /pseudo
     CDS             complement(9727..11395)
                     /locus_tag="OQQ72_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         2843 a         3096 c         2708 g         2748 t
ORIGIN      
        1 ctattaatga tctcacttcc ccaaaaattc tcgcctacct gctgaaacat gattcaaact
       61 acggaccatt cccctggagc gttgatttta cggaagattc acttatcgtt gatgggaaaa
      121 gtatcgcggt ttacgccgaa aaagaggcta aaaatattcc gtggaaagcg aaaggtgcag
      181 aaatcattgt cgaatgtact ggcttttata cctccgccga gaaatcgcag gcgcatcttg
      241 atgctggtgc gaagaaggtg ttgatttccg cccctgccgg tgaaatgaaa actatcgttt
      301 ataacgtcaa tgacgacact ctggatggca acgacaccat tgtttccgtg gcgtcatgca
      361 ccactaactg tcttgcgccg atggccaaag ccttgcatga cagtttcggg atagaagtcg
      421 gcacgatgac gaccattcat gcctatactg gcacccagtc actggtggat ggcccacgtg
      481 gtaaagattt acgtgcttca cgcgcagcgg cagaaaatat cattccccac actacggggg
      541 cggcaaaagc cattggtctg gagatcccgg aactgagcgg caaactgaaa ggtcatgcgc
      601 aacgcgtgcc ggtgaaaaca ggttcggtca ctgaactggt atcgattctc ggaaaaaaag
      661 cgactgccga agaggtgaat aacgcactta aacaagcaac caccaataac gagtcatttg
      721 gttataccga tgaagaaata gtctcttccg atatcattgg cagccatttc ggttcggtgt
      781 ttgatgccac gcaaacggaa attaccgccg tgggcgattt acaactggtg aaaacggtcg
      841 cctggtacga taacgaatat ggcttcgtca cgcagcttat tcgcaccctc gaaaaattcg
      901 ctaaactctg acgcgcacag gcggaggaaa aaacctccgc ctcttttact cattacgact
      961 gtaaataaac cacctgggtc tgcagatatt catgcaggcc atgtttacca tctgcgccgc
     1021 caataccgga tttacgccat ccggcgtgga agccttgcat agcttcgaag ttttcacggt
     1081 tgatgtaagt ttcaccaaac ttcagccctt taatggcttt catcgcgacg ttcagatttt
     1141 gggtatagat ttgatgaggt caggccgtaa tcactgtcat tagccattga gatagcctct
     1201 tccagcgtgt caaatgcgac caccggcaga accgggccaa aggtttcctc atgcataatc
     1261 gacatttcct ggcgaacatc cagcagcaat gtcggcggat aataatatcc tttcccctct
     1321 accgctttgc cacccaacgc cactctcgcc ccttcttcta ctgcgcgcgc cactttttgc
     1381 tcaacccttt ccaacgccgc ggcgttaatc aacggcccca tcgcaatgtc gttgcgttca
     1441 gcggggttac caaattgaac cgcctgcatc gcttcaccca gccgattgac gaactgatca
     1501 taaatgcctt tctgtacata aacacgttct gcacagttac acacttgccc actattaatg
     1561 acgcgtgaat caacgatggc tttgactgcc agttcaagat cggcatcgtc cattacgata
     1621 gctggtgctt taccccccaa ttccagacac actttggtga tgtttttcgc cgcagtcgcc
     1681 atgatcttct cacctgcaga gacgctgcct gtcatactga ccattgcgac ctttgggtta
     1741 cccgccagtt cttgcccaac ggtttcacca cgccccagta caaggttaaa cacgccgcgc
     1801 ggaaggccta tttcatcgac gattttggcg aatgcaatcg cattgtttgg cgtaaattca
     1861 ctaggtttaa tgacgatggt attaccggtc aaaagagcgg gagccatttt gcgggcaatg
     1921 aggaagaacg ggaagttcca cggcagaatg ccggtagtca caccaagcgc acgtttaaac
     1981 aaaagaatat tttctcctgg acgatcgctt tgaataatct cgccctcgta acgccgtgcc
     2041 cactccgcca tgtaatcgat atagtcggca gtaaaagcca cttcgacttc agccagctgc
     2101 tggatcttgc ccccttcttc aacaatcagc gcactgattt cactggcgcg ttcgcggatc
     2161 ccggcggaga ttttgcgcaa ccaactggcg cgttcaatag caggcaacgc ttcccattct
     2221 ggttgtgcac gttctgctgc atcgattgcc ttacgggcat cctcggcctg accatcgggt
     2281 atgcgggaaa tgacagcctc tgtagcaggg tttaccacat caatccatgc gtctccacgc
     2341 caggtaacaa actgtccatc gatatacata ggatgttgaa cgggtactga catgggcgac
     2401 tcctgtgatt tatatgtttg ttcttggtaa atacattgtt aattaacatc aatcatcata
     2461 gagacggcat cgtgaaagga caattctgtg aagggcttca taaaaacaag tgtaaaagga
     2521 ataaaaggca gaaataaaag tcaggagtca tgcccgtttg caaacaagtg gttcacaaac
     2581 gggcaatttt tgacgtaacg agcgactttc catcgcctcg atgagcaccg catcgtgttt
     2641 aagcgtttgc catgcatgga tgacttctgc cggaaaatca acgtgaacga taaaatctcg
     2701 cccgcgggga ccgtagccat cgctatcatc gcgtaaacgc ggcagctcgc cagtgagtag
     2761 tgagagataa cgctcaaccg gccataatcc ttgtaactga ttaataaaga ttacactgtc
     2821 tgcgttattt cctaactgag gaacgaatcc gggataactt aaccagcgtg gcgcatcggg
     2881 attgtcccca gtcatacggc ggaacgtcgc catcgtgcgc cgctgcatgg tggggtcctg
     2941 aacaacgata gccgtatgaa ctcgttctac ggcctgatta aatagcgcga tgctaaagcg
     3001 tgcgttttca ccgcagtttg ttgactggtc ttcaatccag attttttcat gcggaatgtg
     3061 ccagaactga tgagcgatat ccgccaggat ggtcgcttct gctctgccag tggtgcggat
     3121 agtgttgtag tgcggatgct gtgcgatggc gctatacaaa aaagttgtcg agtgaccgat
     3181 accaccacta atcagtaaag gaatttgctg atcgcgagca atcttacatg ccgcgtcgat
     3241 agtcggcata accgcattgc ctgcaaggat cacgcaatcg gcctgataca gcacctcacc
     3301 ggagaaatca tcctgcgcca gccactgtcc gataacattt atggcatcta tagttgccgg
     3361 cgaaagcgtc ggaaacgggg taatgttcat ggttcctcct tatcgttccc ttaagaatac
     3421 tgcgtgagat aatagtgaga agctgagcac tctgaaagga ggaagtcgta tgtccttaac
     3481 cgccactccg caagcctgac atatctttta aggaaatgct gtagataaac attattcatc
     3541 ttgcagcaga gaattgtatt tttctgaatt cctgaatttt tacccttacc gttttagaat
     3601 taataaaaaa cccggcgcta aatgcttacc gggttttaga tttattaggc aaatagcagg
     3661 gttaaccgct aatctgctcc atcgcctgca aaatacgctt atctgaaatc ggataaggcg
     3721 taccaagttg ttgagcgaag taactaacgc gcagctcttc tatcatccaa cggatctctt
     3781 tcacgtcttc atcctcacga cgtgcaggcg gcagtttgtt gatccattgc tgccacgcct
     3841 gctggacgtt ttcgactttc agcatctgtg cacgatcgcg atgtggatca accgccagtt
     3901 tttccagtcg tttttcaatc gcctgcaaat atcgcagcgt gtcgcccagc cgtttgaagc
     3961 cgttaccagt gacaaaaccg cgatatacca acccgcccat ctgcgcttta atgtcagaaa
     4021 gccccagtgc catggtcata tccacccgcc ctttcagacg tttgttgata ttgaacactg
     4081 ccgtaagaat ttgctcgacc tgcttcgcaa tatctaccac cgtgtcgttc agttcggcac
     4141 gcactttctc atgcagcgca gcaaagcctt cttccgtcca gaccgggcca ccattggcgt
     4201 cgatcagttg atccacaccg caggagatac agtcgtcgat cagctccagc actttgccat
     4261 acgggttgaa gtacagtccc agcttggctt tgttcggtaa cttttcatgt aaatacttga
     4321 tcggcgaggg aatatttagc agcagtagac ggcgaagacc attccacatt gcctgttttt
     4381 gctccagcgg gttatcaaac agtttgatcg ccacgctgtc gcgttcatcc accagcgccg
     4441 gccacgcctt cactttatag ttgccacgct tctgttcgta actttccggc agctgaccaa
     4501 aactccagat atgtaagccg ctctgctcga taccgtcatc cgccaccgcg gacagcgttt
     4561 cctgcacttt gcctttcagc gcatctttca gatcttgtag cgagcgccct tcttttagct
     4621 tcttgttttt gtcatccacc acgcggaagg tgattttcag gtgatcgggc acctgatccc
     4681 agtgccagtc ttcgcggtca acggtaacgc cggtcatccg ccgtaactcg cgctcaaggc
     4741 tgtcgagcaa cggtaactcc agcggtgtga cgcggcctaa aaacgcttcg gcgtagtttg
     4801 gtgcaggcac aaaattacgg cgtaccggtt tcggcaacga tttaatcaga gcaatcacca
     4861 attcgcggcg cagaccgggg atctgccatt caaacccgct ttcctcaacc tggttaagta
     4921 acggcagcgg aatatgtacg gtcacaccgt ccgcgtctgc gcctggctca aactgatagc
     4981 tcaaacgcag cttgagattg ccctgatgcc agaagttcgg gtaatccagc ttgctgattt
     5041 tttccgcccc ttctttgatc aacatgctct tttcaaagtt gagcaaatca ggcgtttcgc
     5101 ggctgacttt tttccaccag ctatcgaagt gacgagcgga gattacatcg tggctgatgc
     5161 gctggtcgta gaactcaaac agcgtttcgt catcaaccag aatatcgcgg cgacgtgatt
     5221 tgtgttccag ctcttccact tcggcccgca gtttcaggtt ttcacggaag aatgcgtgac
     5281 gcgtctgcca gtcaccttcc accagcgcat ggcgaataaa gagttcacga cataacgccg
     5341 gatcgatctg gctgtagttg accttgcgcg cggcaacaat cggcaaacca taaacagtga
     5401 ctttttccgt tgccatcacc gcgccctgcg cccgttccca gtgcggttcg ctgtaggtac
     5461 gtttaatcaa atgctgagcg acaggctcca cccattccgg gtcgatacgc gcagcaatgc
     5521 gcccccacag gcggctggtt tctaccagtt ccgccaccat tacccatttc ggcggttttt
     5581 tgaataaacc agaaccgggg aagatggaga aacgcgcgtt acgtgcgccg gtatattctt
     5641 gtttatcggc atctttcatg ccgatatggg aaagtaaacc cgtcagcaac gcaatgtgaa
     5701 tttcgcgata ctccgccggt tcgctgttaa ccggaatgcc aagttctttc accacctgac
     5761 gcaactgggt gtagatatcc tgccattcgc gcacgcgcag atagttgaga taatcggtac
     5821 gacacaggcg acggaaggcg tttgaagaaa gcgccttttg ctgctcgcca agataattcc
     5881 acagatttac aaacgcgagg aagtcggatt ctttgtcgtg gaagcgacga tgtttttcgt
     5941 ccgatgcctg ctgtttgtcc atcggccgct cacgcgggtc ctgaatggag agcgcggacg
     6001 tgataatcat cgcctcacgc acgcagccat gtttctgcgc ttccagcacc atacgcgcca
     6061 gacgaggatc gaccggcagt tgcgagagct ggcgaccgag cggcgtcagt ttataggcgc
     6121 tggcctgttc atccgtggtg atcgcgccca gttcttcgag cagacgcacg ccatcctgga
     6181 tattgcgttt atccggtgct tcgacaaacg ggaacgcagc gatatcgccc agccccagcg
     6241 cggtcatctg caaaataacc gaggccaggt tggtacgcag aatctccgga tcggtaaact
     6301 ccgggcgcga gaggaaatcg tcttcggaat agagacgaat acagatccct tcggacacac
     6361 gaccacaacg gcctttacgc tgattggcag acgcctgtga aatgggttca atcggcaaac
     6421 gctgcacttt ggtgcgatag ctgtagcggc tgatacgcgc cgtaccgggg tcgataacgt
     6481 atttaatccc cggtacagtc agcgaggttt ccgcgacgtt ggtcgccagc acaatgcgtc
     6541 gcccgctgtg cgactggaac acgcggttct gttcgctatt cgaaagccgc gcataaagcg
     6601 gcaagatttc ggtatggcgt aagttcagct tgttcagcgc atcggcggta tcgcgaattt
     6661 cccgctcgcc gctcataaag atcagaatgt cgccagggct ttcctggctc agttcgtcta
     6721 cggcgtcaaa aatcgcctgc aactgatcgc gctcggtgtc atcggcttct tcaacaatcg
     6781 ggcgatagcg cacttccacc ggataggtcc gaccggagac ttcgataatc ggcgcattat
     6841 taaagtggcg agaaaagcgt tccgggtcga tagtcccgga agtgataatg atttttaggt
     6901 caggacgccg cggcagcaac tctttcaaat agccgagcag aaaatcgata ttcaggctgc
     6961 gttcgtgtgc ttcgtcaata atgatggtgt cgtactgcat cagcaggcgg tcttgctgga
     7021 tctccgccag caggataccg tcggtcatca gcttgaccat cgtgttatca cttacgtgat
     7081 cgctgaaacg cactttgtaa ccgatgcaac cgcctggctc cgttttcagc tcttccgcaa
     7141 tacggttcgc caccgttctt gccgccagac gacgcggctg ggtatggccg atcagtcctt
     7201 taatcccgcg ccccagctcc atacagattt tcggtagctg ggtcgtttta ccggaaccgg
     7261 tttccccggc gacgatcacc acctggtgat cacgaatcgc ttcgagaata tcctgttttt
     7321 tctgactaac tggcaaattg tccggataag tgatttccgg tcgtgccgct tcacgcagca
     7381 ggactttccc tgccgcctgg tcaatctctt tcgccatctc ctggaaaatg gcctgttgtg
     7441 catcaggatt tttaaccttc ttaacaccat gcagacggcg agaaaaacgc agtctgtcgc
     7501 gcagcatcaa cgaatccagc cgctgctgca aagcagtaaa ggtcaatttt tgttgttctg
     7561 tcataacgtt agtgggcagt agtctgcctg attaattttc ttttaaatga tagatataga
     7621 gtaccacatc gcggctttct atgcgttgtt caataaattc gaacataggc ttcgatttat
     7681 tgcgctatct ctgtggcagg attgtgaata aagtgtcagc aagcaacggg gcatcgccaa
     7741 ttcaaacatc tataaggaaa caccatgagc aaggtattag ttcttaaatc cagcatcctg
     7801 gcagggtact ctcagtctaa tcagttgtcc gattattttg ttgaacaatg gcgcgaaaag
     7861 cactccgctg atgaaatcac cgttcgcgac ctggctgcaa atccgattcc ggtactggat
     7921 ggcgaactgg ttggcgctct gcgtccgagc gatgcgccgc tgactccgcg tcagcaggaa
     7981 gctctggcgc tttccgatga gctgattgcc gagctgaaag cccacgacgt tatcgttatt
     8041 gcggcaccga tgtataactt caacatctca actcagttga aaaactattt tgacctggtt
     8101 gcacgcgcag gcgttacttt ccgctatacc gagaacggtc cggaaggtct ggtaacgggt
     8161 aaaaaagcca tcgttattac cagccgcggt gggatccaca aagatggacc aacggacctg
     8221 gtgacgccgt atctgtccac gttcctcggc tttatcggca ttaccgatgt gaaatttgtc
     8281 ttcgccgaag ggatcgcata cggtccggaa atggcagcga aagcgcagtc tgacgcgaaa
     8341 gcggccatcg acagcattgt tgctgcataa ccggacacga tcttgatgtg gactgtagtt
     8401 cagtccacat ctcaatccac ttacctgttt tcccataatt tcagcatcgc tttgtgatct
     8461 tccttaagca caatatgcga acgtctggct cgaatataac taatcgcttc atcaacggtt
     8521 ttacagtgtc cgtaacataa caaccatgcc gccactacca gcgcactgcg cgataatccc
     8581 aacgcgcaat ggaccagaac gctgccttgc tcttcgcgta atgtttccag catcgccacg
     8641 gcctgtcgga gctccccctc ttccggaacc accagatcca gcatcggtac acagaaatag
     8701 agtcgatctt ttgtcgctcg tccccgaggg aattcaaagg tgacgtccag aaccgcattc
     8761 tgtgccggaa tatgtcgtgg aaacgcccct aaataaacac cagcagtaat tttgctcacc
     8821 ggctccaggc gacgacaaaa ccaacgcata gacagccaca tcccgatgcg ccagggcaat
     8881 gtcagccagt aaacggcggg cgggagtttc ccctgactat ctttccctgt tgttatcgcg
     8941 ccaagcccac cgtacccacg gccaataatg agtagcgata atactggcca acataaccag
     9001 actggccacc ataactgaat catcaccatt agctccatca acacaatgca cgagcccgcg
     9061 cctacgacat atggcagtgc tattttgatt cgacgttgat caggtttctg ataattccaa
     9121 cgacgatcga cgggcaccat ccagtcaatc aacataccta ccgccagccc tgtgatgaca
     9181 tcaataaaat gatgctgcca ggtcgtcaga gtagaaatag cgatgagtaa aaaccatccg
     9241 ccacagactt tacgccacct ctcagccaga tgctgacgaa agtgacgcca aagtagccag
     9301 cagagaataa tatgcagcga aggagactgg ttataaggca gatcaaacag ttcaagttgc
     9361 gaaaatggcc atcccgtcac cccactcact tcaggacgga taaaactaaa cttcagcgga
     9421 tagagcaaaa aaccgcagca ggccattacc gttgccagaa taagccggtg gacaagtcgg
     9481 cgctgttcga atgtcgtgct acaaacgaac agcgaaaatc catataaaag atccagactc
     9541 cagtaaggaa caatagtcca gggaagaaaa gggatcgccg tttcccaacc gaatacctga
     9601 ctggggatat catggctgtt aaggtcctga accgcggtga actgattaag agatccatag
     9661 gtgaagaaaa aaaacggggc cagcaacaat aaccagccag cgccttgtag caatacgttc
     9721 cgacgttcag ttatcacgac gcaccgccat cgaaaccgta aaaatacccc actcatcaat
     9781 ccgttgtgtg catttatcaa atccggcatc acgcacgagt gaatccatct ccccttgcga
     9841 acgcacgcgc attacccacg gtttaccatc tttatgactg gttaacaccc cggcaatcat
     9901 ctccagttga gggtgccacg gctgcccggt gtagatgaga atgccgaccg gttcgatggc
     9961 attggcaaga cctgcgagtg agttttttac ctgctcattt tcgggaaaaa gctcatacag
    10021 tccagagaca attgccagcg taggccgcgg agttaacgcg ctgagttcct ccgggttaaa
    10081 cgcatcgccc tgttcaaaac gcacccgccc agacattccc cgttgggcaa tcatctcttg
    10141 cccctgtgca acatttaact cgctgtaatc acgtaacaaa atatcgctta cggcaggctc
    10201 gtttgccagc gcatccagta catagcgccc atgccctgcg gcaatgtcaa ccacgcggac
    10261 ggctaaacct ttggcgtgga gatcggcaac ggcttgttta atcagtattt gtaaatgggt
    10321 tttgcgctgg cgaataccgc gccagccaac actgttcagg tagattttgt cgattaagcg
    10381 cccgaatgcg ttactacctt gcggttgatt ttgatagaca taatccagcg aactgcctga
    10441 atcaaagccg gtgctcattc cgagatgcag gcccgcagag tgcgtcccga acaatttcat
    10501 cgcctttcgc ataaagcgat acgctaaatc aaccggcgat aatagcacgg gtccaccaga
    10561 aagtagccgc cattgatccg ctgatggtcc tgtgcagtct tcatgctgat aatcaaattt
    10621 ttgcgatttg ttagcatata aacgactaat aaagctttgc attttttcaa atgccagcgc
    10681 cctgttctct tcacccaacg tgtcgtgata aaagcctggc agcagatgca gctctttcag
    10741 agggctacgt aatctctgat aaaaatcaat ctgcggttgg cgatgcacca catagtcatc
    10801 acctgatatc agaagttgcg tggggagcgt aatcgccgcc gcatctctaa taatacgttc
    10861 agacgtttta tagagatcga gcaagatatt gacggcaatc gcccgtgtga tcagcggatc
    10921 attattgaaa ctcgccaccc gttgccgatc gtgggtcaaa tagcgtcctt tcacatagga
    10981 attaataaaa aacagaccac gcagacgatg ccataacgcc agcgcaggac gtgccagcgg
    11041 cacatacaat ttaaccttaa aggccggaga agccagcacc agcccgcgaa ttgcaggcgc
    11101 ataatcatga acctatgtgg caaccagcac tgcgccgacg ctttgcgcga tcacaaccac
    11161 ctcttccagt ccaacctagc tgtcgctggc agcaaaacgg acaaattcat cgacatcctg
    11221 cactgaacgc gcaagagatg ggctataacc acgcggcccc gaagtttttc catgcccccg
    11281 agcatcccat gcataaaaag cagtatctgg catcgccagt tcatcaacga tatgttgtag
    11341 acgaccagaa tgttcatggc cacgatgaaa taagacaatg acctttttcg cccct
//
LOCUS       DAJVUY010000138        11330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.138, whole genome shotgun sequence.
ACCESSION   DAJVUY010000138 DAJVUY010000000
VERSION     DAJVUY010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.138"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            86..523
                     /locus_tag="OQQ72_003246"
     CDS             86..523
                     /locus_tag="OQQ72_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001524956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HCS2012880.1"
                     /translation="MKTIKPESIALFCLLSGDVDLAKHLADILPITCFVGEDWQQDFQ
                     PLDGGPVQSLSDSYSDYSVLLLIAAESEISVPEWLAHSEGTTVILIAEHNARLLTGPA
                     GGAVALIHYLNEICHSRETAVNDAFCRTLTRGSLAIPQCHLLS"
     gene            657..1201
                     /gene="cobU"
                     /locus_tag="OQQ72_003247"
                     /pseudo
     CDS             657..1201
                     /gene="cobU"
                     /locus_tag="OQQ72_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
     gene            1198..1941
                     /gene="cobS"
                     /locus_tag="OQQ72_003248"
     CDS             1198..1941
                     /gene="cobS"
                     /locus_tag="OQQ72_003248"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HCS2012881.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILALLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            1953..3032
                     /gene="cobT"
                     /locus_tag="OQQ72_003249"
     CDS             1953..3032
                     /gene="cobT"
                     /locus_tag="OQQ72_003249"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HCS2012882.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGVPHVGKKAVLVMCADHGVWEEGGAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVYVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRHQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAIVSTITGRAPEEVVGIGANLPTDKLANKIDVV
                     RRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALAAC
                     QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA
                     IYNNMGELAASNIVLPGNTTSDLNS"
     gene            3094..4029
                     /gene="ldtA"
                     /locus_tag="OQQ72_003250"
     CDS             3094..4029
                     /gene="ldtA"
                     /locus_tag="OQQ72_003250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS2012883.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSYTVTVP
                     DHNTQPLETFAAQNGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYEFDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVPISSGSRQMF"
     gene            complement(4085..4160)
                     /locus_tag="OQQ72_003251"
     tRNA            complement(4085..4160)
                     /locus_tag="OQQ72_003251"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4125..4127),aa:Asn,seq:gtt)
     gene            4487..4858
                     /locus_tag="OQQ72_003252"
                     /pseudo
     CDS             4487..4858
                     /locus_tag="OQQ72_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            4857..5291
                     /locus_tag="OQQ72_003253"
                     /pseudo
     CDS             4857..5291
                     /locus_tag="OQQ72_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Catalyzes the hydrolysis of AMP to form adenine and
                     ribose 5-phosphate using water as the nucleophile;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
     gene            5634..6350
                     /locus_tag="OQQ72_003254"
     CDS             5634..6350
                     /locus_tag="OQQ72_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS2012884.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(6806..6881)
                     /locus_tag="OQQ72_003255"
     tRNA            complement(6806..6881)
                     /locus_tag="OQQ72_003255"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6846..6848),aa:Asn,seq:gtt)
     gene            complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="OQQ72_003256"
     CDS             complement(6982..8625)
                     /gene="yeeO"
                     /locus_tag="OQQ72_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
                     /protein_id="HCS2012885.1"
                     /translation="MLRHILTAKNLLSNPIFKFPNCLPFLSTVCCICRQFVGENLCSF
                     ADSPSLFEMWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIF
                     MENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLG
                     KRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKVLALTYLEL
                     TVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV
                     GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVE
                     SVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVG
                     QIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALF
                     MPIWSASWGLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMF
                     ADWAVRAVLFYWRMVTGRWLWKYPRSEPQKCEKKPVVSE"
     gene            8630..8705
                     /locus_tag="OQQ72_003257"
     tRNA            8630..8705
                     /locus_tag="OQQ72_003257"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8663..8665,aa:Asn,seq:gtt)
     gene            8867..10129
                     /locus_tag="OQQ72_003258"
     CDS             8867..10129
                     /locus_tag="OQQ72_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS2012886.1"
                     /translation="MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRF
                     SGKESRVSLGAYPLVSLAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVA
                     LAWHKTNKKWSPDYAARILASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEV
                     ASRTRQQLCNIMRYAVQQGFTENNLAQHLEGVTAPPVKNHYPALPLERLPELFERIGD
                     YQQGRQLTRLAVVLTLHLFIRSSELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRG
                     AKMRTPYIVPLSRQAIAILKQIKEISGHLELVFPGDHNPYKPMSENTVNRALRLMGYD
                     TKTDVCGHGFRTMACSALVETELWSRDTVERQMSHQERNSVRAAYIHRAEHLDARTAM
                     MQWWSDYLDVSREGYVAPYIYARRHKAA"
     gene            complement(10848..>11330)
                     /locus_tag="OQQ72_003259"
     CDS             complement(10848..>11330)
                     /locus_tag="OQQ72_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="HCS2012887.1"
                     /translation="MAAALELSRLMGLRSQEVVQSAQSLRTWKQSLERGEPRLTVVFG
                     TKGGRPRETVILDAVAIRKALDNALVVAEDRHGRLIDKPDLKSAMKYWHSQASRLGLT
                     GTYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVAQVYGRKDTD
                     "
BASE COUNT         3009 a         2646 c         2760 g         2915 t
ORIGIN      
        1 gggctgcatt caaggtgtgg caatattgtt tcatggctta tcaaccagag cgccattaca
       61 ggaaattaag tggagggcga gaggcatgaa aacgataaaa cccgaatcga tagctctttt
      121 ttgcctctta tctggagatg tggatctggc gaaacatctg gctgatatat tgccaataac
      181 ctgttttgtt ggtgaggact ggcagcaaga tttccagcct cttgatggtg ggcctgtgca
      241 atcgttatca gattcgtata gcgattattc agtgctgcta ttgatagcag ctgaaagcga
      301 gatatccgta ccagaatggc tcgctcattc tgagggaacg acggtaattt tgattgcaga
      361 acacaatgcc cgtttgctga ctggtccggc tggtggggct gtagcattaa tccattatct
      421 gaatgaaatc tgtcattcca gagaaaccgc tgtcaatgac gcattttgtc ggacgttaac
      481 acgaggaagt ctggctattc cgcaatgcca tcttctttcg taatggattg agaatgctgg
      541 atttttaatt atattacgcg cagtattaat cgcgtaaatg ttttgcggtc agcaacggtg
      601 ggggatccat tgttctgttc aatgaatacc atcatacaat tgaatcagga gtcggtatga
      661 tgatttcggt gacggggggc gtacggagcg ggaagagtcg ccacgcagag gcgcttattg
      721 gggactcttc acaggttctg tatacgccac ctcgcaaatc cttgatgatg agatggctgc
      781 acggatagaa catcatcggc aaggccgccc gacgcactgg cacacagtgg agcgctggca
      841 acatcttgat gaattaattc atgcagacat taacccgcat gaggctgtat tgctggaatg
      901 cgttaccacc atggtgacta atctgttgtt tgattatggc ggcgataaag accctgatga
      961 atgggattat caggcgatgg aacaggcgat taatgctgag attcagtcgt tgattgctgc
     1021 ctgccaacgt tgtcccgcaa aggttgtatt agtgactaac gaagtgggaa tggggattgt
     1081 gccggagagt cgtctggcac gacattttcg tgatattgcc gggcgggtaa atcagcagct
     1141 ggccgctgcg gcaaatgaag tatggttggt ggtttcgggt attggagtaa aaatcaaatg
     1201 agtaaattat tttgggcgat gctctctttt attacgcgtc tgcctgtacc gcgtcgctgg
     1261 tcccagggac tggatttcga gcattattct cgcggtatta ttacttttcc tttaattgga
     1321 ttattgcttg gcgcgattag cgggctggtc ttcatggtgc tgcaggcatg gtgtggcgta
     1381 ccactggcgg cactgtttag cgtacttgtg ctggcgctga tgaccggggg attccacctg
     1441 gacggcctcg ccgatacctg tgatggcgta ttttctgcac gtagccgcga tcgcatgttg
     1501 gaaatcatgc gtgatagccg tttaggcacc cacggcggtc tggcattgat ttttgttgta
     1561 ctggcaaaga ttctggtatt aagcgagttg gctctgcgtg gcgaaccgat ccttgcattg
     1621 ctggcggcag catgtgcggt cagccgcggg actgccgcat tattgatgta tcgtcatcgt
     1681 tatgcccggg aagaaggact tggcaatgtg ttcattggca aaattgatgg gcgacaaacc
     1741 tgcgtcacac tcggcttagc cgctattttt gctgccgtat tattgccggg tatgcatggt
     1801 gtggctgcta tggtggtgac gatggtggcg attttcatcc tcggtcagct tctcaaacgt
     1861 acgctgggcg ggcaaaccgg cgatacgctg ggagctgcta tagagcttgg tgaactggtc
     1921 ttcctgctgg cactgctata aagagacgtg acattcaaac acttgccgat ttactgaata
     1981 cgatccctgc tatcgatcct gccgctatgt cgcgtgcaca acggcatatc gacgggttac
     2041 tcaaacctgt tggtagcctg ggaaggctgg aggcgcttgc catacaactg gcaggaatgc
     2101 cggggttgaa tggcgttccg catgtgggca aaaaagcggt actggtcatg tgtgccgatc
     2161 acggcgtctg ggaggaaggg ggcgctattt ccccaaaaga agtgacagcc attcaggctg
     2221 aaaatatgac ccgcggaaca accggcgtgt gtgtgctggc agcacaagcg ggcgctaacg
     2281 tctacgtaat tgatgttggt attgatactg ctgagcctat ccccgggctt atcaacatgc
     2341 gtgttgctcg aggtagtggc aatattgctt cagctccggc aatgagtcgc catcaggcag
     2401 aaaagttgct tttggacgtc atatgttata cgcgggagct ggcaaaaaac ggtgttacgc
     2461 tgtttggtgt aggtgaactg gggatggcaa acacgacacc ggcagcggca atagtcagca
     2521 caatcactgg ccgggctcct gaagaagtgg ttgggattgg cgcaaacctg ccgacagata
     2581 aactggctaa taaaattgat gttgtgcgcc gggcgattac gttgaatcaa ccaaatccgc
     2641 aggatggcgt tgatgtcctg gcaaaagtgg gtggatttga tttggtcgga atggctggcg
     2701 tgatgttagg cgctgcgtcc tgcggtttac ccgtgttgct ggatggattt ctttcttatg
     2761 ctgctgcgct cgcagcctgt cagatgtctc ctgcaatcaa accgtatctc attccttctc
     2821 acctgtcggc agaaaaagga gcgcgtatag cgctgtcgca tttggggctg gagccttatc
     2881 tcaatatgga gatgcgttta ggtgagggga gtggcgcagc tctggcgatg cccatcatcg
     2941 aagctgcctg tgcgatatat aacaacatgg gcgaacttgc tgccagtaat attgttctac
     3001 cggggaatac gacttctgat ttgaacagtt aaaaacgaaa agtctgataa aagctatact
     3061 taacggatag ctttcgcgac ttaggaaagg gacatgatgc gtcgtgtaaa tattttttgc
     3121 tcatttgctc tgctttttgc cagccatact agcctggcgg taacttaccc attacctcca
     3181 gagggtagcc gtttagtggg gcagtcgtat actgtaactg ttcctgatca caatacccag
     3241 ccgctggaga cttttgccgc acaaaacggg caagggttaa gtaacatgct ggaagcgaac
     3301 ccgggtgctg atgttttctt gccgaagtcc ggctcgcaac tcaccattcc gcagcaactg
     3361 attttgcccg ccactgttcg taaagggatt gtggttaacg tcgctgagat gcgtctttat
     3421 tactacccac cagacagtaa tactgtggaa gtctttccta ttggtatcgg ccaggctggg
     3481 cgagaaaccc cgcgtaactg ggtgactacc gttgaacgta aacaagaagc tccaacctgg
     3541 acgccaacgc cgaacactcg gcgcgaatat gcgaaacgag gggagagttt gcccgcattt
     3601 gttcctgcgg gccccgataa tcccatgggg ctgtacgcga tttatattgg caggttgtat
     3661 gccatccatg gtaccaatgc caattttggt attgggctcc gggtaagtca gggctgtatt
     3721 cgtctgcgca atgacgatat caaatatctg tttgataatg ttcctgttgg gacgcgtgtg
     3781 caaattatcg accagccagt aaaatacacc actgaaccag atggctcgaa ctggctggaa
     3841 gttcatgagc cgttgtcgcg caatcgtgca gaatatgagt ttgaccgaaa agtgccattg
     3901 ccggtaaccc catctttgcg ggcgtttatc agcgggcaag aagttgatgt aaatcgcgca
     3961 aatgctgcgt tgcaacgtcg atcgggaatg cctgtgccaa ttagttctgg ttcaagacag
     4021 atgttttaag agcgttggta attagaaagc aaaaagcctg ctagaaagca ggcttttttg
     4081 aatttggctc ctctgactgg actcgaacca gtgacatacg gattaacagt ccgccgttct
     4141 accgactgaa ctacagagga atcgtgtgaa cggggcgcat attaatggca gtgcatggtg
     4201 atgtcaaagg gtgaaatgca tttttttgtt tgtttgctgt caatttcaac aaagtggtga
     4261 gctttcaatc ttattgggta atgaaccatc gtggtgcata ccctcctttt atagggcagg
     4321 ggaacgcgac agctgattaa aggagcaaat gacgaatcta tcataatctc ttatttgaca
     4381 gttggttagc ttgtacatca acgccaaaat aaaactggca agcatcttgc aatctggttg
     4441 taagtaatgg cggcacttgg gccgattctt aaaaaccgga ggcaacatga acttcagacg
     4501 cctgaaatac ttcgtaaaaa ttgtagatat tggtagcctg acccaggctg ctgaagtatt
     4561 gcatatcgca caaccagcgc tcagccagca ggttgccaca ctggaaggtg agttaaatca
     4621 acaacttttg atccgtacaa agcggggcgt tacgccaaca gacgccggaa aaattctcta
     4681 tacccatgcg cgggccattt tacgtcagtg tgaacaggcc caactggcgg tgcataacgt
     4741 tggtcaggca ttatcggggc aagtctcgat tggctttgca ccaggaaccg ctgcgtcatc
     4801 catcaccatg cccttattac aggcggttcg cgctgaattt ccggagatcg ttatctatcc
     4861 cgagcattgc tgaagtgcaa cgtgcgcttt atgacgccac caagctggtg agcggcaggc
     4921 ccggtgagga agtcaaacag cggctacgta ctggtactgt ggtaaccaca gatgacagga
     4981 actgggaatt acgttactca gcttctgcac ttcgttttaa cttaagccgg gccgtagcaa
     5041 ttgatatgga aagtgcaacc attgccgcgc aaggatatcg tttccgcgtg ccatacggga
     5101 cactactgtg tgtttcagat aaaccgttgc atggcgagat taaacttccc ggccaggcta
     5161 accgttttta tgaaggcgct atttccgaac atctgcaaat tggcattcgg gcgatcgatt
     5221 tgctgcgcgc agaaggcgac cgactgcatt cgcgtaaatt acgaaccttt aatgagccgc
     5281 cgttccgata ataagttctg aaccttctta tcagaaatag atgtgaagga gtaagtaaga
     5341 cacctggcaa atagcctgca ataatcgtgg gctgtttgct tccttgggcg gatacgtgtt
     5401 ttattatcgt cttaatgatt tccacatatt aaaagcaagt atgctttcaa aacacaatta
     5461 taaaaaatcc cgccaacaat ataagttttt ataaaattaa atataagatt atggctttag
     5521 aatattttta tttctaatag acgagatttt tcctgttatg atataatatg ccgaattaac
     5581 acatgttaac gatttaccag taatgtaaat aaattttcga ggagatcatt ccagtgggac
     5641 gtaaatgggc caatattgtt gctaaaaaaa cggctaaaga cggtgcaacg tctaaaattt
     5701 atgcaaaatt cggtgtagaa atctatgctg ctgctaaaca aggtgaaccc gatccagaat
     5761 taaacacatc tttaaaattc gttattgaac gtgcaaagca ggcacaagtt ccaaagcacg
     5821 ttattgataa agcaattgat aaagccaaag gcggcggaga tgaaacgttc gtgcagggac
     5881 gttatgaagg ctttggtcct aatggctcaa tgattatcgc cgagacattg acttcaaatg
     5941 ttaaccgtac gattgctaac gttcgcacaa ttttcaataa aaaaggcggc aatatcggag
     6001 cggcaggttc tgtcagctat atgtttgaca atactggtgt gattgtattt aaaggatcag
     6061 accctgacca tatttttgaa attttacttg aagctgaagt tgatgttcgt gatgtgactg
     6121 aagaagaagg taacattgtt atttataccg aacctactga ccttcataaa ggaatcgcgg
     6181 ctctaaaagc agctggaatc actgagttct caacaacaga attagaaatg attgctcaat
     6241 ctgaagttga gctttcccca gaagatttag aaatctttga agggcttgtt gatgcccttg
     6301 aagatgacga cgatgtacaa aaagtttatc ataacgtcgc aaatctctaa ttatatatta
     6361 aagaaatctg tctttatggc agatttcttt aatctcatat aatccttata aaaaatataa
     6421 tgttcaactc gtcatattgc ttataaaaaa tcctcgttcc cagagaaata atatttatta
     6481 taattccagt tcttcttttt ctgattacag aaggcaaagt gacaattacg catagtttcc
     6541 cgataaagac gcgacagcta catcccgcat aaggcatttt tctctttatc cttgtacggt
     6601 acttcatgga acagagtttt tgaccttgcg aatcgtgatg tctgttgggg aggggcaatt
     6661 tgctcactga agcgtgagac tcgattaagc gcacgaaaca cagaaatcaa aaatcccggg
     6721 cactttttta caaggtaacc gggtaaaaat aatttttatt ttttaactgt tttgagactc
     6781 atagagatgt ctcaaaacta aaatttggct cctctgactg gacttgaacc agtgacatac
     6841 ggattaacag tccgccgttc taccgactga actacagagg aatcgtgaga acgaggcgaa
     6901 tattagcgat gcccacccac aatgtcaaag cctgttattt aaatttgaaa tcgtttgctg
     6961 aaataatctg cattttgtcg tttattccga cacaactggc tttttttcac acttttgcgg
     7021 ttcggatcga gggtatttcc acagccaacg tccagtaacc attcgccagt aaaacagcac
     7081 ggcccgcaca gcccagtcgg caaacattcc catccagaca ccaaccacac cccagccaag
     7141 catgatgccc agcacataac cgacgacaac ccggcaaccc cacatgctca acatagaaac
     7201 ccacatggcg taacgggcat cgcgagcacc tttaaatcca gcgggtagcc cccatgaggc
     7261 ggaccaaata ggcataaata aagcatttag ccaaatcaga atcacaacga catgtttaac
     7321 ctgtggatcc tgggtgtaaa acgatgccat aaccccggca aagggagccg ttagccaggc
     7381 gatggccgtt aatccaagag tggaaagcca gaacacatgc cgcaactgaa tctctgcttg
     7441 cgctatctgc cctaccccca accttcggcc tgtaatgatc gtagaagcag agccgagcgc
     7501 acttccgggt aagttgataa gagccgcaat tgaaaacgcg ataaaatttc cggcaataac
     7561 actggtcccc atcccggcaa cgaacatttg ggttaataac cgaccactgg taaataacac
     7621 tgattcgaca ctcgcgggaa taccaatccc catgacttcc cagataatgc taaaattcag
     7681 cggtttaaaa tagctcttta acgaaatcct tagcgcagga ttaaaaccaa tcgccagcac
     7741 ccacaaaatt gcaactgcgc caatataacg agaaatggtt aaacccagcc ctgccccgac
     7801 aaatcccagt cccggccagg agaaaaggcc gtaaatcaat atgccgctaa taataatatt
     7861 aagaatattc aggctaccgt taatcaatag cggtattttc gtattccctg caccacgaag
     7921 tgccccgcta ccaataagag tgatggcagc tgctggataa ctgagtaccg tcagctccag
     7981 ataagtcaac gccagtactt taacttctgt cgtggcatca cccgcgacga aatcaataat
     8041 ttgttcgcca aaatgatgaa taagcgttgc caacagtacg gcaaacaacg tcatgatcac
     8101 caatgactgc cgcgtcgcca ccctcgctcg tcgtcgatcc cgcttaccga gactaaatgc
     8161 cacaacgaca gtagtaccaa gatcgatagc agcaaaaaaa gccataatga ccatattgaa
     8221 gctgtccgcc aatcccacgc cggccatcgc atcttttccc agccagctga ccagaaaagt
     8281 gctcagaacc cccatcaaca ggacacaggc attctccatg aagataggaa cagcaagcgg
     8341 ggttatctcg cgccagaaca acactttgta gctcttgcgt ttagcgtgcc agcgagtgcc
     8401 gtgaacaacc tggcgtaaag cagaggagat attcaaagcc gaccttaatt gcagaaagtg
     8461 aaaccacatt tcaaataatg agggagaatc agcaaagctg caaagatttt cgccaacaaa
     8521 ttgtctgcaa atgcaacaaa ctgttgatag aaacggcaaa cagttgggga atttaaaaat
     8581 cgggtttgac aaaagatttt tcgccgttaa gatgtgcctc aacagcgatt cctctgtagt
     8641 tcagtcggta gaacggcgga ctgttaatcc gtatgtcact ggttcgagtc cagtcagagg
     8701 agccaaattc cgattcttac gctatcttat tagtccttat ttgatattga ttcaataagt
     8761 tagcgtgaaa atctttccag atgtgtattc agttttccct ccgcatccgg ttaatttggt
     8821 ggtcagattt gggggcaggt tggttcgatt ctggagtgac ccccaaatgt ctttaaacga
     8881 ttcaaaaatc cgtaacttaa aaccctcttc aaaacccgta aaactgtctg attcgcacgg
     8941 tctgtatctg ctggtcaatc agggcggttc gcgtatctgg tatctcaagt atcgcttcag
     9001 tggtaaagag tcccgcgtca gtctgggcgc atatcctctg gtttcacttg ctgaagcaag
     9061 acaacgacgt gacgatatcc gtaagctact gacgcagaat attaaccccg cccaccagcg
     9121 catgtctgat aaagccgcag cgtcaccgga aaagtatttt aaagccgtgg cgcttgcatg
     9181 gcacaaaacc aacaaaaaat ggtcgcctga ttatgccgcg cgcatcctcg ccagcatgga
     9241 aaatcatatc tttccggcga ttggtcatct gcctgtcact acgctgaaaa cgcagaattt
     9301 cactgcgtta ctgcgggtta ttgaggataa aggttttctg gaagtcgcgt cccgaacccg
     9361 gcagcaactc tgcaacatca tgcgttacgc cgtacagcag ggattcaccg aaaacaacct
     9421 ggcgcagcat ctggaaggcg tcaccgcgcc gccggttaag aatcactatc ccgccctgcc
     9481 gctggagcgg ttgcccgaat tgtttgagcg cattggcgac tatcagcagg gacggcagct
     9541 tacgaggctg gcggtggtgt tgactctcca cctgtttatc cgttccagcg agctgcgctt
     9601 tgcccgctgg ggtgagatag atttcagaaa caaaatctgg accatccccg ccacaaggga
     9661 agcgattgag aaagtccgtt tctctggccg tggcgcaaaa atgcgtactc catatatagt
     9721 gccgctttct cgtcaggcta tcgccattct gaagcagata aaggaaatct ccggccatct
     9781 ggaactggtg ttccccggcg accataaccc gtataagccg atgagcgaaa acactgtcaa
     9841 ccgggcgttg cgtcttatgg gctatgatac caaaactgat gtctgtgggc atggattccg
     9901 gacaatggcg tgtagcgcat tagtggaaac tgaactctgg tcacgggata ccgtggagcg
     9961 gcagatgagt catcaggagc gcaacagcgt tcgggcagcg tatatccacc gggctgaaca
    10021 tctcgacgcc cgtacagcca tgatgcagtg gtggtcggat tatctggatg taagtcgcga
    10081 ggggtacgtt gcgccgtata tttatgcgcg gcggcataag gcggcctgag acagtggcta
    10141 tataatttgt taaaaatgaa aaagcagatc ctgattgaat ccggatctgc tttttacatt
    10201 aggcaatcgc tgccagacaa tctgcaccag aaacgccata actgcaccag ttcagtacca
    10261 ccgcttacct gcgccagtct gccgtcgcct gtctgtgtca ggactgcgcc agatcttatc
    10321 gaataaacat caaactgcgc cagtgttacg gccctttcag ccctttggcc ttttccggtc
    10381 tggcgctgtt acccttagcc gccccttacc ctttccggcc tttttccttt gctggcgcaa
    10441 tcgccagaaa aatcgtcaag ctgcaccaga agcctgccaa taggtcatac cgttcagaag
    10501 catcgttatt gagaggaaac cgtacaaaaa atttctacgt agaaattttt tcggtggata
    10561 acgatgaata aagagtattt tataatgtga tggctatcaa aaatcgacca tccaaaaata
    10621 attcattgtt cattgattta taatgaataa ccatgaattt aatagtcgat gattattgtt
    10681 tttatcagta ttgataggaa agtatacaaa aaattttggc cccaaaattt tttgtacgaa
    10741 aaccgatgaa taacgcgaaa ttaataggaa accatccaaa attatttggg gcaaataatt
    10801 ttgcccgaaa accgatggat aactcgatct tttcaaagca acggctatca atcagtatcc
    10861 tttcttccgt aaacctgcgc cacataccgc ccgcgcccgt cgccgtgtcc caaatccatc
    10921 gccgtcattg ccagcgcttc tttctcactg aatccctgcg ccagataatg acgaatggca
    10981 tcctgcgccc acgcatagcg caacgagtgc ggggaatatg tgccagttaa cccgagacgt
    11041 gacgcctggc tgtgccagta tttcatcgcg cttttcaggt cgggtttatc tatcagcctg
    11101 ccgtggcgat cttctgccac aaccaacgca ttatccagcg cttttctgat agcgacagca
    11161 tccagaataa cggtttctcg cggacgcccg cctttggtgc cgaacaccac ggttaaacgg
    11221 ggctcacccc gctccagcga ttgcttccac gttcttaatg actgcgcact ttgcaccacc
    11281 tcctgcgaac gtaatcccat cagccttgag agttccagcg ccgctgccat
//
LOCUS       DAJVUY010000139        11227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.139, whole genome shotgun sequence.
ACCESSION   DAJVUY010000139 DAJVUY010000000
VERSION     DAJVUY010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.139"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            63..662
                     /locus_tag="OQQ72_003260"
     CDS             63..662
                     /locus_tag="OQQ72_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2012888.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTKTDRPG
                     LKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGR
                     FFFHVMGALAEMERELIVERTLAGLAAARARGRTGGRRPKLTKEQHEQIARLIKNGHD
                     RKQLAIIYGIGTSTIYRYHPVGDIQTEETTGQTQENENR"
     gene            complement(691..1179)
                     /locus_tag="OQQ72_003261"
     CDS             complement(691..1179)
                     /locus_tag="OQQ72_003261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001761054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012889.1"
                     /translation="MMMIYGMFVFELRTLPHQQLQQNKSWRHVKNERVNRSASWQYIG
                     AGDDRIVLSGVLYPEITGGEVSLSLLTTQAYTGRPWPLIDGVGQIYGMYVLTETNTTR
                     SEFDRYGKAKKIEFSLTLERCDEDLRERLQSSSFSDMLSGFKDKVTSSLNSAASSVKG
                     LF"
     gene            complement(1192..3999)
                     /locus_tag="OQQ72_003262"
     CDS             complement(1192..3999)
                     /locus_tag="OQQ72_003262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000853438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS2012890.1"
                     /translation="MKTLDIRVAFSAVDRLTRPAENARRLMGQFGDSIQRTQGAIKNL
                     ERQARSFERARDAVSKADAGIVKARRQLNALNQLQRTGTVLSEKQQKLMQQLSTRLER
                     LNESRTREIQKMRELGGELKRHGISLTGSDNTIQQAIRRTEQYNNQLERERQALARVT
                     RARERYSRAQETAGKLKTGGALAIGAAAAGGYAAGRFLQPAIGFGKEMSRVQALTRID
                     QNSPQFKALREQALKLGSETQFTAGDAASGQAFLAMAGFTPQAIQAALPGVLSMATAG
                     GMDLGETADIGSNILTQFGLSADQMDRVGDTLTAAFTRTNTDLRALGETMKYAGPVAG
                     KLGISLEQAAAMAGVLANMGIRGSDAGTAMRASLARLASPPKAAAEALKELGVSVSDA
                     GGKMRPMEDVLADLYKATRKYGEVDRVSFFKDIAGEEAFTSFMALVDAAGDGSLPKLR
                     KELEGARGEAERTAKVMANNLDGDLKSLSSAWEGLRIRIADLIDGPLRSVTQWLTRVV
                     SKVTALAQAHPALTRQLLIAGGALLAMTATVGSLSLAIGVLAGPLAKLRLGFSLLTGS
                     MNAVRVLPALWGMVTGSVSLLGGAIGALFSPVGLIVAALAGAAVLIWKYWDPIRAFFA
                     GVFSGIMERLTPLRETFERFGPVFDAIGSGISQVFNWFKSLLSPMESSKETLDKCTSA
                     GEIFGNVLGGALQLVLTPAKMLLDTLAWILEKLGVLPDEAERARKKIEDAQRAAILQD
                     KVALLQGDLAKINPPKPVENGNGTGGDNPKDNKPLTDSNTGTLRRLSKIADNTGKLVE
                     ETKKRIGPGDIVFKNLPRALAVRGEWQERKIAQVSKPAPAINITPVVPAPLPPALVPV
                     VAASSRPVAEAIRSPVASVPVTSRNREPVAFGFGGEIHVHLHNVVTQNPRELAKLVGE
                     MVRAEMERRARAGRGCFYDKD"
     gene            complement(4037..4141)
                     /locus_tag="OQQ72_003263"
     CDS             complement(4037..4141)
                     /locus_tag="OQQ72_003263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000333494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS2012891.1"
                     /translation="MCFEHIEDLVADIAAIFNWSPAEIFMMTPGEVVS"
     gene            complement(4150..4524)
                     /locus_tag="OQQ72_003264"
     CDS             complement(4150..4524)
                     /locus_tag="OQQ72_003264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2012892.1"
                     /translation="MKDIDTETRNNTVADNVTAVEDMAVERGVKLTRPIERGGEKITY
                     VEITGAIEQAGSLRGLSLSDVLNLKADTMFTLLPRVTSPRLDEVMIKKMSSRDFIQLC
                     AVAVNFMSEPDSGAKSVQETAA"
     gene            complement(4580..5090)
                     /locus_tag="OQQ72_003265"
                     /pseudo
     CDS             complement(4580..5090)
                     /locus_tag="OQQ72_003265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310671.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
     gene            complement(5090..6274)
                     /locus_tag="OQQ72_003266"
     CDS             complement(5090..6274)
                     /locus_tag="OQQ72_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HCS2012893.1"
                     /translation="MSETRFHGARVTENTDLVTAINDVDSSVIGIVATADDADAKLFP
                     LNKPTLLTRVNDVLGKCGTTGTLYRALKAIADQVSTKVIVVRVAEHKEEDGKTQDQLV
                     IGGSEDDGSYTGMYALLVAEQDESIGYRPRILAAPELDTEAVTKSLCVIADKLRAFVY
                     ASCHGCNTMAEAITYRQKFNEREVMLLWPDFIAYNPKNGKNETFPAPAYACGLRAYID
                     HEQGWHKSLSNVPVKNVLGMSRHVFWSLQAEDSDANSLNNKEITTIIRRNGFRFWGNR
                     TPETNAYIFEVYTRTAQVLADSIAEAQFETIDSPLTPANVKDVISAIRAKLDSLVTAG
                     KLIGAECWYDVVDNSTTDLRQGRVRIRYKYTPVPPLEDMELYQTFTDEYFEPAFAVLG
                     GA"
     gene            6432..7541
                     /locus_tag="OQQ72_003267"
                     /pseudo
     CDS             6432..7541
                     /locus_tag="OQQ72_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494339.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
     gene            7790..10909
                     /locus_tag="OQQ72_003268"
     CDS             7790..10909
                     /locus_tag="OQQ72_003268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2012894.1"
                     /translation="MIGQFLSATEILAKNYVRNKMVKNPFYSNLKWNFIEKNIIRLTS
                     SPVKSVLCISAFSFVLLYVGYLNELFIKNNLLHYFPFRHSLTEWQTTILSGQLTIIGI
                     VYPLVIGLVSVLFQKKADRKIAQTAYQRYSGFMLAGLSGLFLSGFILLSVLIKTVFGS
                     YLYGIACLISILWLLINIVLSIWFFIVSLEILDDVKRQIIIKRYIAFEIVMPHICNKI
                     SAKLRLYPIYQKHNYSNLEITQADYKGEYISVASSYSKEDELSLYHRPFQLTLNLINY
                     QLKKKNHFASFVIGDNRTKETESTGKILFSVKNIKPDSLLIKILKQCFYRAPIKGGDF
                     SVSLTMQAITADTYMYLRDSDLISFDNAISALINNFNNLCDLYFFQDDNTNNNFLLIT
                     TELFERSFQYEFSDEVYKISNNSMDKINLSERFFELCLWSGVRIINNRKHLISNELCI
                     YMGITRSQWSILTEWFRNNQSLLNASLRSRYNRILRTYITVWEQYQESINFRFCNTEN
                     SDLFELFCKTQLQELPSMIIDATQTRDPSTIDTAVDLINRWQHSMNIDSHSVEKYSYK
                     GQLFNPVFFISKKLNFNSDREWFNIAIINALTDMRICTCLYLTSRINTSDKLMTHYIK
                     LILEGKLIDQTGGYETPTEEIDNASQLIKILIRICLWTWSENMEHNGWMNSLARRLRD
                     YDKTDMVMGRVYSNVFDCGFIDMEQSWVQLLLIFSKKNDSVSKEIKEAIENNYITYRE
                     KQRLIGVLSKICNSIEYTQIKLTLTLDDLQTKKENLRKLLQEHINMLKKDLDMRLQDA
                     AIDVHRLDSTARKTSEHLRKRIKKTLPLSLFKSIDFKQASDCFTKHKISIKIDKEPYA
                     EGIESIPYINEGDIQADLILKDIQRIILSNLFSTGCSQHTVIEDFNMLIDHIKSSADL
                     AGKLVLVMSKEIFQQYNRMLFDNPNLRELMRKNDDGSMNITTESGTRKVYFLPFVNQP
                     FSLVVKDNYFTKLIIREYDNNKLVNVTSENIKSDSDKFKLTLNYELNIVFEGNADLKI
                     AHSQRVTSE"
     gene            11045..>11227
                     /locus_tag="OQQ72_003269"
     CDS             11045..>11227
                     /locus_tag="OQQ72_003269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001512982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS2012895.1"
                     /translation="MFRCPLCGASARIRTSRPENDSNTVRQKYYQCNNLECGVCFSTL
                     EAFHKFTSKHASPIHSS"
BASE COUNT         3073 a         2815 c         2511 g         2828 t
ORIGIN      
        1 ttaaataatg gccgtttctg gcctgcatgg catgatttgc gcttttggac gggagattca
       61 gtgtgctgat tggctatgta agggtatcaa caaatgacca gaatacagac ctgcaacgaa
      121 acgctcttgt ttgtgcagga tgtgaacaaa tatttgaaga taaattaagc gggacaaaga
      181 cagaccgacc gggattaaaa cgcgctttaa agcgccttca aaaaggtgac acgctggttg
      241 tctggaaact ggatcgcctc gggcgaagca tgaaacatct gatttctctc gtcggggaac
      301 tacgggagcg agggattaat tttcgcagtc tgaccgacag catagacaca tcttctccaa
      361 tggggcgttt tttcttccac gtgatgggtg ccctggctga aatggaacgt gaattaattg
      421 ttgaacgtac actggccggg ctggcggcag cgcgcgcaag ggggcgcaca ggcggacgtc
      481 gaccgaagct gacaaaagaa cagcatgagc aaatagcaag gctaatcaaa aacgggcacg
      541 acagaaaaca actggcaata atttacggca ttggcacatc gacgatttat cgttatcacc
      601 ctgtaggcga tatacagact gaagaaacaa ccgggcagac tcaggaaaat gaaaaccgct
      661 aatctgacca ttagcggttt ttgtgttaaa tcagaacagc cctttaactg aactggccgc
      721 gctgttaaga gatgatgtca ccttatcttt gaagccggac agcatatcac tgaacgatga
      781 ggattgcagg cgctcccgca aatcctcatc acagcgttca agagtcagtg aaaattctat
      841 ctttttcgcc ttaccgtagc gatcaaactc ggagcgggtc gtattcgttt cagtcaggac
      901 atacatgccg taaatctgcc cgacgccatc aatcaaaggc cagggtcgtc ctgtatacgc
      961 ctgcgtagtc agcagcgaca gcgacacttc gccacctgta atttcaggat aaagcacacc
     1021 agaaagaacg atgcgatcat cacctgcacc gatatactgc cagcttgctg aacggttaac
     1081 gcgttcattt ttcacatgcc gccagctttt gttttgctgt aactgctgat gcggcagcgt
     1141 gcgcagctca aaaacaaaca tgccgtagat catcatcatg gccatgactc ctcaatcttt
     1201 atcgtaaaaa cagccacgcc cggcacgggc gcgccgttcc atttctgccc tgaccatttc
     1261 accgaccagt ttcgccagtt cgcggggatt ctgcgtaaca acgttatgca gatgaacatg
     1321 aatttcacca ccaaatccga aggcaacagg ctcccggtta cgggaagtta caggaactga
     1381 tgccactgga gatcgtatag cctccgccac cgggcgggag ctggccgcaa caacagggac
     1441 cagcgccgga ggcagcggag ccggaaccac gggtgtgata ttaattgcgg gggcaggctt
     1501 actgacctgc gcaatcttcc gctcctgcca ctccccacga acagcaagtg ctcggggcag
     1561 gtttttaaag acaatatcgc cggggccaat gcgttttttc gtctcctcaa ccagcttacc
     1621 tgtgttatca gcaattttgc tgagtctgcg cagcgtaccg gtattgctgt ctgtgagcgg
     1681 tttattgtct ttggggttat cacctccggt gccattgcca ttttccacag gcttcggcgg
     1741 attgattttc gccagatccc cctgaagcaa ggcaaccttg tcctgaagaa tggccgcacg
     1801 ctgtgcgtct tcgattttct tgcgcgccct ttccgcttca tccggaagca caccaagctt
     1861 ttcaagtatc cacgccagcg tatccagcaa catttttgca ggtgtcagaa caagttgtaa
     1921 cgcaccgcca agaacgttac cgaatatctc gccagcactg gtacatttat ccagagtttc
     1981 cttgctggac tccatcggtg acagcagcga tttaaaccag ttaaacacct ggctgatccc
     2041 actcccgatt gcgtcaaaaa caggaccaaa ccgttcaaag gtttcgcgca acggggtcag
     2101 cctttccata atcccgctga acaccccggc aaaaaatgcc ctgatgggat cccagtattt
     2161 ccagataaga acggcagctc cggcaagcgc agccacgata agaccaaccg gactgaacaa
     2221 cgccccgata gcgcctccca gtaaagaaac ggaacccgtc accattcccc atagtgctgg
     2281 cagaaccctg acagcattca ttgatccggt caggagggaa aaaccaagac gcagttttgc
     2341 cagcgggcca gcaagcacac caatagccag cgacaacgag ccaaccgttg cagtcattgc
     2401 cagcaatgca ccgcctgcaa tcagtagctg gcgcgtcagt gcgggatggg cctgcgccag
     2461 cgccgtcacc tttgatacca cacgcgtgag ccactgcgtg acagaacgca gcggaccgtc
     2521 aatcagatct gcaatgcgga tgcgcaaccc ttcccatgca ctgctgagtg atttcagatc
     2581 gccgtcaagg ttgttggcca taacctttgc cgtgcgttca gcctcaccgc gcgcgccttc
     2641 aagttctttt ctcagtttgg gtaaggagcc gtcacctgcc gcatcaacga gggccataaa
     2701 tgatgtgaaa gcctcttctc cggcaatgtc cttaaagaac gatacccggt caacttcccc
     2761 gtatttgcgg gtagctttat aaaggtcagc cagcacatcc tccatcgggc gcattttgcc
     2821 cccggcatcc gagacagaca cgccaagctc tttcagcgcc tctgctgccg cctttggcgg
     2881 tgatgccaga cgagccaggc tggcacgcat tgccgtacca gcatcactcc ccctgatacc
     2941 catattcgcc agcacgcccg ccatcgctgc ggcctgctcc agagatattc ccagcttacc
     3001 cgccaccgga cctgcatatt tcatggtttc acccagtgcg cgaaggtcag tgttggtacg
     3061 ggtaaacgct gcggtgagtg tgtcgccgac ccggtccatc tggtcagcag aaagaccgaa
     3121 ctgcgtcaga atatttgagc caatatccgc cgtctcaccg aggtccatac cgccagccgt
     3181 tgccatgctc agtacgccag ggagcgcagc ctgaatggcc tgtggtgtaa agccagccat
     3241 tgcaagaaat gcctgtccac tggcggcatc gcctgcggtg aactgcgttt cagagccaag
     3301 ttttaacgcc tgctcacgca gcgccttaaa ctgcgggctg ttctggtcga ttcgcgtcag
     3361 tgcctgaacg cgggacatct ctttgccgaa cccgatcgca ggctgcaaaa aacgcccggc
     3421 agcatagccg cccgccgctg ccgcaccaat tgccagcgca ccacctgttt tcagttttcc
     3481 cgctgtttcc tgcgcgcgcg aataccgctc acgcgcccgt gttacacgcg caagcgcctg
     3541 ccgttcgcgt tcaagctggt tgttgtactg ttcggtgcgt ctgatggcct gctggatggt
     3601 gttatcgctg cctgtcaggg aaatgccgtg gcgtttcagc tctccgccaa gctcccgcat
     3661 tttctgaatt tcccgtgtgc gcgattcatt caggcgttca agccgggtgc ttaactgctg
     3721 catcagcttt tgttgttttt cgctgagcac tgtacccgtg cgttgtaact gattaagggc
     3781 gttaagctgg cgtcgtgctt tcacgatgcc agcatccgct ttactgacag cgtcacgggc
     3841 gcgctcaaat gatcgcgcct gacgctcgag atttttgatc gccccctgcg ttcgctggat
     3901 ggagtcacca aactgcccca tcaggcggcg ggcgttttcg gcaggccggg tcagcctgtc
     3961 aacggcgctg aaagcgaccc ggatatcaag agtcttcatt gtctgcattc ccgctacgaa
     4021 gtgccgcccg ctcacgtcag ctaaccactt cgccgggcgt catcatgaag atttcggcgg
     4081 gcgaccagtt aaaaatggcg gcaatatccg ccaccagatc ttcgatgtgc tcaaagcaca
     4141 ccagggtgat tacgctgccg tctcctgcac gctcttcgcg ccagagtctg gctcgctcat
     4201 aaaatttaca gccacagcgc acaactgaat aaaatcgcgt gacgacattt ttttaatcat
     4261 cacttcatcc agtcgtggcg aggtcacgcg aggcaacagc gtgaacatgg tatccgcttt
     4321 cagattcagc acatcagaca gcgacagacc acgcagggat ccagcctgct caatagcccc
     4381 ggtgatctcc acatacgtga ttttttcgcc accacgctca attggtcggg tcagttttac
     4441 gccacgttcg acagccatat cctcaactgc cgtcacatta tccgccacgg tgttattccg
     4501 ggtttcagta tcgatgtctt tcatctgttg tctccttttc agtcagaggc gacgcactgc
     4561 gccgccagca tattacttat cagccaagcc caagcgcgga acggatgcga tcgggcacaa
     4621 tgtccttgcc gtccttccgg taaatgaagt tcagcaggtc aatctcccac aacgggcgat
     4681 cgttaacact cagcttgtag taggtgtttt aatggcgtaa gtgtgtgatg tggcttcgcc
     4741 ctgtttggct tcccccatat caatttccgt cacacgtccg cgcatttcga cttcatacag
     4801 gtcgctttct gcatcggtgt agtattcacc cgcaaaacgc agcagcgtgc cgtcaatcgt
     4861 gccgccatac ttaaggaaca gctcacgaac tgcgccccca tgacaaagct cgcatcaagc
     4921 gcggagtcgt ccagaccgag atcaatactt accgcaccca tcatgccacc accccggtag
     4981 ctgtcggttt tgcgcgtcag cttaggcaga gtgacggacg tcacattacc cacttcgttt
     5041 tcaccatcca caaacagcgt aaaaaagcga agatgttttg gcacagccat caggcacctc
     5101 ccagcaccgc aaatgcgggt tcaaagtatt catcagtaaa cgtctggtaa agctccatgt
     5161 cttccagtgg cggaacgggc gtatatttgt agcgaatacg cacacgtccc tgacgtaaat
     5221 ccgtggtgct gttatccacc acgtcatacc agcactccgc gccaatcagt ttcccggcag
     5281 tcaccagtga atccagtttt gccctgatgg cactgataac atccttcaca ttcgcaggcg
     5341 tcagtggact gtcgatggtt tcaaactgcg cttccgcaat tgaatcagcc agcacctgtg
     5401 cggttcgggt atacacctca aagatgtagg cgttcgtttc cggtgtgcgg ttaccccaga
     5461 agcggaaccc gttgcgacga ataatggtcg tgatttcttt gttgttgagg ctgttggcat
     5521 cgctgtcttc ggcctgcaac gaccagaaca catgcctcga catccccagc acatttttaa
     5581 ccggaacgtt ggacagcgat ttgtgccatc cctgttcatg gtcaatgtac gcacgaaggc
     5641 cgcacgcata ggcaggcgcg gggaacgttt cgtttttgcc atttttcggg ttgtaggcga
     5701 tgaagtccgg ccataagagc atcacctcac gttcgttgaa tttctggcgg taggtaattg
     5761 cctcggccat cgtgttacag ccatgacatg aggcatacac aaacgcgcgc agtttatctg
     5821 caatcacgca cagggatttt gttaccgcct ccgtgtccag ctccggcgcg gccagaatac
     5881 gcggacggta tccgatgctt tcatcctgct ctgcaacaag cagcgcatac atccccgtat
     5941 agctgccgtc atcctcagaa ccaccgataa ccagttgatc ctgcgtcttt ccgtcttctt
     6001 ctttgtgttc agccacgcga acgacgatca cctttgtgct cacctggtct gcgatggcct
     6061 taagcgcacg ataaagcgtc cccgttgtcc cgcattttcc cagcacgtca ttgacgcggg
     6121 tcagcagtgt gggcttgttc agcgggaaca gcttcgcgtc cgcatcatcc gccgttgcca
     6181 cgataccgat aacgctggaa tcaacatcgt taatcgctgt taccaggtcg gtattctccg
     6241 taacacgggc accatgaaaa cgagtttcac tcatagcttc agccccttgt atccgttaaa
     6301 tgattcagca acaatcatca cccaccacgc gcgtaatctc acccctgcgc cgttctcccg
     6361 ccacggcgac aacaaaaagc agtaaccccc tccgcacgca catgcgacca tgccgcacag
     6421 ggagggagca gatgaccgac accaccatgc aattgctcag tcagggcacg gcccccgtga
     6481 aaatgccgga ttttgatatt ctctcggagg gtaaaacgct gtcaggcgtg gcggagcgcc
     6541 tgatgagcct gtaactgacc gacaaccggg gatttgaggc ggaccagctc accatcacgc
     6601 tggatgatgc ggatggtcag ttgcagctac cgccacgggg cgcgcgtctg acggttctca
     6661 ttggctggaa aggggaaccg ctgacagaaa aaggcactta cattgttgat gaaatcgctc
     6721 acgaaggacc gccggacagg ctgactgttt cagccagaag cgcagatttt cgggatgaat
     6781 ttaacgttaa acgtgaggtg tcctggcatg atgtgaccgt tgagcgtgtg gtatccgcca
     6841 tcactcatcg gtacggtctg aaaccgcaaa tcagcgaaat gctgatggat atcgaaatcg
     6901 accacgccga ccagaccgaa gaaagcgaca tgtcctttct tacgcgcatg gcggaaatgc
     6961 tgggagcaat cgccacggta aaaagcggca atctgttatt catcatgcca ggtggtggcg
     7021 tgaacgcaca ggggcagccg ttgccctcgt tcgccattac acgcagcagc ggcgatcgcc
     7081 atcagttccg cattgctgac cgcgaggcgt atacgggggt acgcgcctac tggcttgatc
     7141 ttaattacgg gaaaaagaaa aaagtcagcg tgaaacgccg caaaccgcca aaacccaaaa
     7201 aggagaaaag cagcagtcgg gaaggcgact atatggaagg tgcggaaggc aacgtgtttg
     7261 tgttacgcaa gacttatcag aacgagcagg cagcaagacg cgcagcggcg gcaaagtggc
     7321 agcagctaca acgcggagcc gcatcattct ccatcacgct ggcgcgtggt cgtgcagaac
     7381 tctatcccga aatgcatggc acagtgacag gctttaaaag cgagattgat tatcaggact
     7441 ggactattgc aaaagccgag cacaccattg ataacagcgg ctttaccacg cagcttgaac
     7501 ttgaagcaaa aatcccggaa tggatagcag aaacagaata aatctcttaa aaatattatt
     7561 tttgagatgt gcttctacac tgacagtaag aacaaaagat aatgtatcag cccactagat
     7621 gtcagaggtt ggggcatcaa ccagatgcta acaataatac ggatgttttt cccacatgac
     7681 agaggaagtc aagtataatc ttcacagtcc atcccgtcca agggaatatg actcaatagt
     7741 aaaagttcca gtttagttag tagacccaca ctttatagaa gagtaattca tgattggaca
     7801 atttttaagt gcaacagaga ttttagcaaa gaactatgtt cgtaataaaa tggttaaaaa
     7861 tccattttat tcgaatttaa aatggaattt tattgaaaaa aacatcataa gattaacatc
     7921 ctcaccggtt aaatcagtac tttgcatatc agctttttca tttgtactac tttatgttgg
     7981 atatttaaac gaattattta taaaaaataa tcttttacat tatttcccgt ttaggcattc
     8041 attaaccgaa tggcaaacaa ccattttaag tggccaattg acaattattg gtattgtata
     8101 cccccttgtt ataggtttag taagtgtctt attccaaaaa aaggcagata gaaaaatagc
     8161 ccaaactgct tatcagcgtt actcaggatt catgcttgct ggactcagcg ggcttttctt
     8221 atcaggattt atacttctca gtgtactaat taaaactgtc tttggaagtt atctttatgg
     8281 tatagcttgt ctaatcagca tattatggct tttgataaac atagttcttt ctatttggtt
     8341 ctttatcgtg agtcttgaaa ttcttgatga tgtaaaacgg caaataatta taaagcgata
     8401 cattgccttc gaaatagtaa tgccccatat ttgtaacaaa atctcagcca agcttaggtt
     8461 ataccctatc tatcaaaaac ataactattc aaatttagaa atcacgcaag ccgattacaa
     8521 aggagaatac atatctgtgg ctagcagtta ttctaaggaa gatgagttaa gtttatatca
     8581 ccgtcctttt caacttactc ttaatcttat taattaccaa ctaaaaaaga agaatcattt
     8641 tgcgtcattt gtcattggtg ataatcgtac aaaagaaaca gaatccacgg gtaagatact
     8701 ttttagcgtt aaaaatatca aaccagacag cttattaata aaaatactta agcaatgttt
     8761 ttatagggct ccgattaaag gaggagattt ttccgtaagt cttacaatgc aggctataac
     8821 agcagatacg tatatgtatc tgcgggattc tgatctcatt agttttgaca atgctatctc
     8881 tgcattaatt aataacttta ataatctctg cgatttgtat ttttttcaag atgataatac
     8941 caacaataac ttcttactga tcactacaga attatttgaa cggagttttc aatatgagtt
     9001 ttcagatgaa gtttataaaa tatcaaataa ttccatggat aaaattaatc tttctgaaag
     9061 attttttgaa ttatgtcttt ggagcggagt gcgtattatc aataatagaa aacatcttat
     9121 cagcaatgaa ctttgtatct atatgggaat tactcgttca caatggtcaa tattaacaga
     9181 atggttccga aacaaccaat cactcttaaa tgcctcgctt cgttcacgtt ataatcgtat
     9241 attaagaacc tatatcactg tttgggagca atatcaagaa agcataaact ttcgtttctg
     9301 caatacagag aattcagatt tatttgaatt attttgcaaa acgcaactac aagaacttcc
     9361 atcgatgatt attgatgcaa cacagactcg cgatccttct actattgata cagccgtcga
     9421 tcttattaac cgatggcagc actcaatgaa tattgacagc cattcggtag aaaaatacag
     9481 ttacaaaggc cagcttttta acccggtttt tttcatatcc aaaaaactaa acttcaattc
     9541 agacagagag tggttcaata ttgccatcat aaatgcgttg actgacatgc gtatatgcac
     9601 atgtctttat ctgacatcaa gaatcaatac ttctgacaaa ctaatgacac attacattaa
     9661 acttatttta gagggtaaac ttattgacca aaccggtgga tatgaaactc ccactgaaga
     9721 aattgataat gcaagccaac taatcaagat attaattaga atctgcctgt ggacatggtc
     9781 tgaaaatatg gagcacaatg ggtggatgaa tagtttagca aggcgtttac gtgactatga
     9841 taaaacagac atggtgatgg gcagagttta cagtaatgtt tttgactgtg gatttattga
     9901 tatggaacaa tcatgggttc agctattatt aattttttct aaaaagaacg atagcgtatc
     9961 aaaagaaata aaagaagcaa tagaaaacaa ctatataaca tatcgtgaga agcaacgact
    10021 cattggagta ttatcaaaaa tttgtaactc catcgaatac actcaaatca agctgacttt
    10081 aacattggac gatctccaaa caaaaaaaga aaacttaaga aagttgcttc aagagcatat
    10141 taacatgcta aagaaagatc ttgatatgag acttcaggat gctgccatag atgtacatcg
    10201 actagatagc actgcacgta aaacatcaga acatcttcgt aaacgcatca agaaaacgct
    10261 ccctctttca cttttcaaat ctattgattt taagcaggct agcgattgtt tcacaaaaca
    10321 taagatatct attaagatag ataaagaacc gtatgccgaa ggaatagaat ccatccctta
    10381 tatcaatgaa ggtgatattc aagcagactt aattctcaag gacatccaga gaataatact
    10441 ttcaaattta tttagcactg gctgttcgca acataccgta atagaagatt tcaatatgtt
    10501 gattgatcac ataaaatcat ctgctgactt ggctggcaaa ctggttcttg tgatgagtaa
    10561 agagatcttt cagcaatata atcgtatgct tttcgataat cccaacctca gagaactaat
    10621 gagaaaaaat gatgatggct ctatgaacat aactactgaa tccggtaccc gtaaggttta
    10681 cttcttacca tttgttaatc aaccattttc tcttgtggta aaggataact acttcactaa
    10741 attaattatt agagaatatg ataataataa gttagtaaat gtcacttcag agaatatcaa
    10801 aagtgactca gataaattca agctaactct taactatgag ttgaatatag tatttgaagg
    10861 aaacgctgat ttaaaaatag ctcactcgca aagagtgaca tcagaataat atctttgacg
    10921 gcgctcctta gagtgccgtt cgtttattaa ctaatgctaa aaatcattat atagagaaag
    10981 tcatgtttaa atcttagaga atacaaccta gaatagtgta agcactacaa taagagaggt
    11041 cgctatgttc cgttgtccgc tttgtggcgc atctgcccgt atccgcacca gtcgtccgga
    11101 aaatgattca aacaccgtga gacaaaagta ttatcagtgt aacaatctag aatgcggcgt
    11161 atgtttctca acactggaag ccttccacaa attcacttca aagcacgcct cccccattca
    11221 ctcatca
//
LOCUS       DAJVUY010000140        10904 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.140, whole genome shotgun sequence.
ACCESSION   DAJVUY010000140 DAJVUY010000000
VERSION     DAJVUY010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10904
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.140"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..185
                     /locus_tag="OQQ72_003270"
     CDS             <1..185
                     /locus_tag="OQQ72_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415678.1"
                     /note="interacts RssB preventing the degradation of the
                     stress sigma factor RpoS; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS2012896.1"
                     /translation="KLGIILQEKEYPITIYNIAPFNKNLWSLLKSSQECPPGESKITN
                     KCLHNSCIIKICSICY"
     gene            complement(253..1503)
                     /gene="icd"
                     /locus_tag="OQQ72_003271"
     CDS             complement(253..1503)
                     /gene="icd"
                     /locus_tag="OQQ72_003271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCS2012897.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            1675..2328
                     /gene="rluE"
                     /locus_tag="OQQ72_003272"
     CDS             1675..2328
                     /gene="rluE"
                     /locus_tag="OQQ72_003272"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HCS2012898.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            2338..2799
                     /gene="nudJ"
                     /locus_tag="OQQ72_003273"
     CDS             2338..2799
                     /gene="nudJ"
                     /locus_tag="OQQ72_003273"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HCS2012899.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI"
     gene            2853..3959
                     /gene="mnmA"
                     /locus_tag="OQQ72_003274"
     CDS             2853..3959
                     /gene="mnmA"
                     /locus_tag="OQQ72_003274"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCS2012900.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            3995..4636
                     /gene="hflD"
                     /locus_tag="OQQ72_003275"
     CDS             3995..4636
                     /gene="hflD"
                     /locus_tag="OQQ72_003275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HCS2012901.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            4640..6010
                     /gene="purB"
                     /locus_tag="OQQ72_003276"
     CDS             4640..6010
                     /gene="purB"
                     /locus_tag="OQQ72_003276"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCS2012902.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            6178..6849
                     /gene="phoP"
                     /locus_tag="OQQ72_003277"
     CDS             6178..6849
                     /gene="phoP"
                     /locus_tag="OQQ72_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HCS2012903.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            6849..8309
                     /gene="phoQ"
                     /locus_tag="OQQ72_003278"
     CDS             6849..8309
                     /gene="phoQ"
                     /locus_tag="OQQ72_003278"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HCS2012904.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            8385..9506
                     /gene="roxA"
                     /locus_tag="OQQ72_003279"
                     /gene_synonym="ycfD"
     CDS             8385..9506
                     /gene="roxA"
                     /locus_tag="OQQ72_003279"
                     /gene_synonym="ycfD"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[50S ribosomal protein L16]-arginine
                     3-hydroxylase"
                     /protein_id="HCS2012905.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(9555..10781)
                     /gene="pepT"
                     /locus_tag="OQQ72_003280"
     CDS             complement(9555..10781)
                     /gene="pepT"
                     /locus_tag="OQQ72_003280"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCS2012906.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
BASE COUNT         2697 a         2788 c         2725 g         2694 t
ORIGIN      
        1 ttaagcttgg tattatcctt caggaaaaag aatatcctat tactatttat aacattgcac
       61 cattcaacaa gaatttatgg agtttactca aaagcagtca agagtgtcct ccaggagaaa
      121 gcaaaataac aaataaatgt ttacataata gttgcattat aaaaatatgc tcgatatgct
      181 attaataata tccacataaa taaaacaacg ggcgtgttat acgcccgttt caatatttaa
      241 ctcatggaga gattacatgt tttcgatgat cgcttcacca aactctgaac atttcagcag
      301 cttagcgcct tccatcagac gttcaaagtc ataagttacg gttttcgcgt tgatagcacc
      361 ttccatacct ttaacaatta aatcagccgc ttcagtccac cccatatggc gcagcatcat
      421 ctcagcggag aggatgatag agcctggatt tactttgtcc tgaccggcgt atttcggcgc
      481 agtaccgtgg gtggcttcaa acagggcgca ttcgtcaccg atgtttgctc caggagcgat
      541 accgataccg ccaacctgcg ctgccagggc gtcagaaatg tagtcaccgt tcaggttcat
      601 acaggcgata acatcatatt cagccggacg cagcaggatc tgttgcagga atgcatcagc
      661 aatcacgtct ttaatgacga tctctttgcc ggtgttcggg tttttaactt tcagccacgg
      721 gccgccgtcg atcagttcac cgccaaactc ttcacgcgcc agctggtagc cccagtcttt
      781 aaacgcgcct tcggtgaact tcatgatgtt gcctttgtgc accagagtca cagagtcacg
      841 atcgttagca attgcgtatt cgatcgctgc acgaaccaga cgtttggtgc cttcttccga
      901 acacggctta ataccgatac cacaatgttc cgggaagcga attttcttca cccccatctc
      961 ttcacgcagg aatttaatca ctttctcggc gtcggcagag tctgctttcc attcgatacc
     1021 cgcataaatg tcttccgagt tttcacggaa gataaccata tcggtcagtt cagggtgttt
     1081 aaccgggctt ggagtgccct gatagtaacg taccggacgc aggcagatgt agagatccag
     1141 ttcctggcgc agggcaacgt tcagagagcg aataccgcca ccaacaggag tggtcagcgg
     1201 acctttaatg gcaacgcgat attcacgaat cagatcaagg gtttcagcag gcagccagac
     1261 atcctgacca taaacctgtg tggatttttc accggtgtaa atttccatcc aggagatttt
     1321 acgctcgcct ttataggctt tctcgactgc agcgtcgacc actttcagca tggctggggt
     1381 tacatctaca ccgattccat caccttcaat gtaagggata atcggatttt caggaacgtt
     1441 gagtttgccg ttttgcaggg tgatcttctt gccttgtgcc ggaacaacta ctttactttc
     1501 cattcacctc tccttcgagc gctactggtt tgctcgtctg ccaccacgtt gcatatgcgt
     1561 ttgcgtcctg cgatacggat gctttagagc aattttttgt taatgatttg taattggctt
     1621 gtcaatacta ccctattgtt tgccgtcatg aaagatgcgc gttattaggc tataatgcgg
     1681 caattcataa tctctgaaaa taccatgcaa aaaacttctt ttagaaatca cctggttaag
     1741 cgattcagct cgcaacgttc taccaggcgt aaacctgaaa accagcccac gcgtgtgatc
     1801 ctgttcaata aaccctacga tgttcttccg cagttcaccg atgaagccgg acgcaaaaca
     1861 ttaaaagaat tcatcccggt tcagggcgtt tatgcagcag gtcgtcttga ccgcgatagc
     1921 gaagggttac tggtgctgac caataacggc gcgttgcagg cgcgtttaac ccagccgggc
     1981 aaacgcaccg ggaaaatcta ttatgtgcag gtggaaggta ttcccacaca agacgcactt
     2041 gaagccttgc gcaatggcgt aaccttaaat gatggcccta ccctgcccgc cggcgcggag
     2101 ctggttgacg aaccagcgtg gttatggccg cggaatccac caattcgtga acgcaaaagt
     2161 attcccacca gctggctgaa gatcacctta tatgaaggac gtaatcgcca ggtgcgccgc
     2221 atgaccgccc atgttggttt ccccacgctg cgactgattc gttatgcgat gggtgattac
     2281 actttggata accttgccaa tggcgaatgg cgagaagcaa cagaataagg atgcacaatg
     2341 tttaaaccac acgttaccgt tgcttgcgta gtgcacgcag agggtaaatt tttagtcgtt
     2401 gaagagacga ttaatggtaa agcgttatgg aaccaacctg ccgggcatct ggaagccgat
     2461 gaaaccttag tggaagctgc cgcccgtgag ctatgggaag aaaccggcat cagcgcgcaa
     2521 ccgcaacact ttattcgtat gcatcagtgg attgcgccag ataaaacgcc gtttttgcgt
     2581 ttcctctttg ccattgagct tgagcaaata tgcccgaccc agcctcatga cagcgatatc
     2641 gactgctgtc gttgggtcag cgccgaagaa attttaaagg cgtcaaatct tcgttcgccg
     2701 ctggtggcgg aaagtatccg ttgttatcaa agcgggcaac gctatccgct ggagatgatt
     2761 ggcgatttta actggccttt tacaaagggt gtcatctaaa aggctgcgtg atagaatacg
     2821 ccgccttgaa gttcaatgtc gtgagtgatc caatgtctga aaccgcaaaa aaagtaatcg
     2881 tcggcatgtc cggcggtgtc gattcctccg tttctgcctg gctgttgcaa caacagggat
     2941 atcaggttga aggcctgttt atgaagaact gggaagaaga cgacggtgag gaatattgca
     3001 cagcggcagc ggatctggct gatgcccaag ctgtctgcga caagctcggc attgaactgc
     3061 acaccgttaa ctttgctgcc gagtactggg acaacgtctt cgaactgttc cttgccgaat
     3121 ataaagccgg tcgcacgccg aatccggata ttctgtgcaa caaagagatc aaatttaaag
     3181 ctttcctcga atttgccgcc gaagatttag gtgccgatta tatcgctacc ggtcattacg
     3241 tacgtcgggc cgatgtcgat ggcaagagcc gcctgctgcg tggtctggac agcaataaag
     3301 accagagcta cttcctttat acgctcagcc atgagcagat tgcgcaaagc ctgttcccgg
     3361 tcggcgaact ggaaaaaccg caggtgcgta agattgctga agatcttggt ctggtcaccg
     3421 cgaagaaaaa agactctacc ggcatttgct tcattggcga acgtaaattc cgcgagttcc
     3481 tgggccgtta tctcccggcg caaccgggca aaatcattac cgtcgatggc gatgaaattg
     3541 gtgagcacca ggggctgatg tatcacactc tcggtcagcg taaaggtctg ggtatcggtg
     3601 gcaccaaaga aggcaccgaa gaaccgtggt atgtggtgga caaagacgtc gaaaacaaca
     3661 ttctggttgt tgcgcagggc catgaacacc cgcggctgat gtctgtcggg ttgattgccc
     3721 agcagttgca ctgggtcgat cgcgaaccat tcaccggtac tatgcgttgc tcggtaaaaa
     3781 cccgctatcg ccagaccgat atcccttgca ccgtcaaggc gctggacgat gatcgcattg
     3841 aagtgatttt cgatgaaccg gttgccgccg tgacgccggg ccagtctgcc gtcttctata
     3901 acggtgaagt gtgcctcggt ggcggtatta ttgagcagcg tctgccgctg ccggtctgat
     3961 tattatcttt acttaaaaca aggaagcagt gaacgtggca aagaattact atgacatcac
     4021 cctcgccctg gccggtattt gtcagtcggc acgcctggtg caacaactcg ctcaccaggg
     4081 gcattgtgat gccgatgcgc tacacgtctc actcaacagt attattgata tgaaccccag
     4141 ctcgacgctg gcggtttttg gcggtagcga agccaacctg cgcgtcgggc tggaaaccct
     4201 gctcggcgtg ctcaatgcca gcagtcgcca gggcttaaac gccgaattaa cccgctacac
     4261 actcagcttg atggtgcttg agcgcaaact ctcctcagcg aaaggcgcgc tcgacactct
     4321 gggcaaccgg atcaacggcc tgcaacgcca gctcgaacac ttcgatttac agtccgaaac
     4381 gctgatgagc gcgatggctg ctatctatgt tgatgtgatc agcccgcttg gcccgcgcat
     4441 tcaggtcacc ggttcccctg ctgtactgca aagcccacaa gtgccggcga aagttcgcgc
     4501 aaccctgctg gcaggcattc gcgccgccgt gctctggcac caggtcggcg gcggacgtct
     4561 gcaactgatg ttttctcgta atcgcctgac cactcaggca aaacaaattc ttgctcattt
     4621 aaccccggag ttgtgatcta tggaattatc ctcactgacc gccgtttccc ctgtcgatgg
     4681 acgctacggc gataaagtca gcgcgctgcg cgggattttc agcgaatatg gtttgctgaa
     4741 attccgtgta caagttgaag tacgttggct gcaaaaactg gccgcgcacg cagcgatcaa
     4801 ggaagttcct gcttttgctg ccgacgcaat cggttacctt gatgcaattg tcgccaattt
     4861 cagcgaagaa gatgccgcac gcatcaaaac catcgagcgt accactaacc acgacgttaa
     4921 agcggttgag tatttcctga aagaaaaagt ggcggagatc ccggaactgc acgcggtttc
     4981 tgaattcatc cactttgcct gtacttcgga agatatcaat aacctctccc acgcattaat
     5041 gctgaaaacc gcgcgtgatg aagtgatcct gccgtactgg cgtcaactga ttgatggcat
     5101 taaagatctc gccgttcagt accgcgatat cccgctgctg tctcgtaccc acggtcagcc
     5161 agccacgccg tcaaccatcg gtaaagagat ggcaaacgtc gcctaccgta tggagcgcca
     5221 gtaccgccag cttaaccagg tggagatcct cggcaaaatc aacggcgcgg tcggtaacta
     5281 taacgcccac atcgccgctt acccggaagt tgactggcat cagttcagcg aagagttcgt
     5341 cacctcgctg ggtattcagt ggaacccgta cactacccag attgaaccgc acgactacat
     5401 tgccgaactg tttgattgcg ttgcgcgctt caacaccatt ctgatcgact ttgaccgtga
     5461 cgtctggggt tatatcgccc ttaaccactt caaacagaaa accattgctg gtgagattgg
     5521 ttcttccacc atgccgcata aagttaaccc gatcgacttc gagaactccg aagggaatct
     5581 gggcctttcc aacgcggtat tacagcatct ggcaagcaaa ctgccggttt cccgctggca
     5641 gcgtgacctg accgactcca ccgtgctgcg taacctcggc gtgggtatcg gttatgcgct
     5701 gattgcgtat caatccaccc tgaaaggcgt gagcaaactg gaagtgaacc gtgaccatct
     5761 gctggatgag ctggatcaca actgggaagt gctggctgag ccaatccaga cagttatgcg
     5821 tcgctatggc atcgaaaaac cgtacgagaa gctgaaagag ctgactcgtg gtaagcgcgt
     5881 tgacgccgaa ggcatgaagc agtttatcga cggtctggcg ttgccagaag aagagaaagc
     5941 ccgcctgaaa gcgatgacgc cggcaaacta cattggtcgc gccatcacca tggttgatga
     6001 gctgaaataa actcgtatca gtgccggatg gcgatgctgt ccggcctgct tattaagatt
     6061 atccgctttt tattttttca ctttacctcc cctccccgct ggtttattta atgtttaccc
     6121 ccataaccac ataatcgcgt tacactattt taataattaa gacagggaga aataaaaatg
     6181 cgcgtactgg ttgttgaaga caatgcgttg ttacgtcacc accttaaagt tcagattcag
     6241 gatgctggtc atcaggtcga tgatgcagaa gatgccaaag aagccgatta ttatctcaat
     6301 gaacatttac cggatattgc gattgtcgat ctcggattgc cagacgagga cggtctgtca
     6361 ctgattcgcc gctggcgtag caatgatgtt tcactgccga ttctggtatt aaccgcccgt
     6421 gaaagctggc aggacaaagt cgaagtatta agtgctggtg ctgatgatta cgtgactaaa
     6481 ccatttcata ttgaagaggt gatggcgcga atgcaggcat taatgcggcg taatagcggt
     6541 ctggcttcac aggtcatttc gctaccaccg tttcaggttg atctctctcg ccgtgaatta
     6601 tctattaatg acgaagtgat caaactgacc gcgttcgaat acaccattat ggaaacgttg
     6661 atacgcaata atggcaaagt ggtgagcaaa gattcgttaa tgctccaact ctatccggat
     6721 gcggagctgc gggaaagcca taccattgat gtactgatgg gacgtctgcg caaaaaaatt
     6781 caggcacaat atccgcaaga agtgattact accgttcgcg gccagggcta tttgttcgaa
     6841 ttgcgctgat gaaaaaatta ctgcgtcttt ttttcccgct ctcgctgcgg gtacgttttc
     6901 tgttggcaac ggctgcggta gtactggtgc tttcgcttgc ctacggaatg gtcgcgctga
     6961 tcggttatag cgtcagtttc gataaaacta cgtttcggct gttacgtggc gagagcaatc
     7021 tgttctatac ccttgcgaag tgggaaaaca ataagttgca tgtcgagtta cccgaaaata
     7081 tcgacaagca aagccccacc atgacgctaa tttatgatga gaacgggcag cttttatggg
     7141 cgcaacgtga cgtgccctgg ctgatgaaga tgatccagcc tgactggctg aaatcgaatg
     7201 gttttcatga aattgaagcg gatgttaacg ataccagcct cttgctgagt ggagatcatt
     7261 cgatacagca acagttgcag gaagtgcgag aagatgatga cgacgcggag atgacccact
     7321 cggtggcagt aaacgtctac ccggcaacat cgcggatgcc aaaattaacc attgtggtgg
     7381 tggataccat tccggtggag ctaaaaagtt cctatatggt ctggagctgg tttatctatg
     7441 tgctctcagc caatctgctg ttagtgatcc cgctgctgtg ggtcgccgcc tggtggagtt
     7501 tacgccccat cgaagccctg gcaaaagaag tccgcgaact ggaagaacat aaccgcgaat
     7561 tgctcaatcc agccacaacg cgagaactga ccagtctggt acgaaacctg aaccgattgt
     7621 taaaaagtga acgcgaacgt tacgacaaat accgtacgac gctcaccgac ctgacccata
     7681 gtctgaaaac gccactggcg gtgctgcaaa gtacgctgcg ttctctgcgt agtgaaaaga
     7741 tgagcgtcag tgatgctgag ccggtaatgc tggagcaaat cagccgcatt tcacagcaaa
     7801 ttggctacta cctgcatcgt gccagtatgc gcggcgggac attgctcagc cgcgagctgc
     7861 atccggtcgc cccactgctg gacaatctca cctcagcgct gaacaaagtg tatcaacgca
     7921 aaggggtcaa tatctctctc gatatttcgc cagagatcag ctttgtcggt gagcagaacg
     7981 attttgtcga ggtgatgggc aacgtgctgg ataatgcctg taaatattgc ctcgagtttg
     8041 tcgaaatttc tgcaaggcaa accgacgagc atctctatat tgtggtcgag gatgatggcc
     8101 ccggtattcc attaagcaag cgagaggtca ttttcgaccg tggtcaacgg gttgatactt
     8161 tacgccctgg gcaaggtgta gggctggcgg tagcccgcga aatcaccgag caatatgagg
     8221 gtaaaatcgt cgccggagag agcatgctgg gcggtgcgcg gatggaggtg atttttggtc
     8281 gccagcattc tgcgccgaaa gatgaataaa tatgtccata cttcacgcat tacgttaagc
     8341 atccgttata atcggttgca gataccagcc tgtggatgct taacatggaa taccaactca
     8401 ctcttaactg gcccgatttt cttgaacgtc actggcagaa acgcccggtg gtgttaaaac
     8461 gcggctttaa taattttatt gacccgatct ctccagacga gttggcgggt ctggcgatgg
     8521 aaagcgaagt tgacagtcga ctggtcagtc accaggatgg caaatggcag gtcagccacg
     8581 gcccgttcga aagctacgat catctcggtg aaaccaactg gtcattactg gtacaggcag
     8641 tgaaccactg gcatgagccg accgccgcgc tgatgcgacc gttccgtgaa ctaccggact
     8701 ggcgtattga tgatctgatg atttcttttt ctgtacctgg cggcggcgtc ggcccgcatc
     8761 tcgatcagta cgacgtgttt atcattcagg gtaccggacg tcgtcgctgg cgagtgggcg
     8821 aaaagctgca aatgaaacag cactgcccac atccggatct gttacaggtc gatccgttcg
     8881 aagccatcat cgatgaagag ctggagcctg gtgatattct ttatattccg ccaggattcc
     8941 cgcatgaagg ctacgcgctg gaaaatgcga tgaactattc cgtgggcttt cgcgcgccaa
     9001 atacacggga actgattagt ggatttgccg attatgtgct gcaacgtgaa ctgggcggca
     9061 actactacag cgatcctgat gttccacctc gcgctcatcc tgcggatgtt ctgcctcaag
     9121 agatggataa actgcgtgag atgatgctcg aattgatcaa ccagccggaa cactttaagc
     9181 aatggtttgg cgagtttata tcccagtcac gtcatgaact ggatatcgcg ccgccggaac
     9241 cgccttatca gccagatgaa atctacgatg cgctgaaaca aggtgatgtg ctggtgcgcc
     9301 tgggtggtct gcgcgtattg cgcattggcg acgacgtgta tgccaatggt gagaagatcg
     9361 attccccgca ccgtccggca ctggatgcac tcgccagcaa cattgcgctg actgcggaga
     9421 attttggcga tgcgctggaa gatccgtcat tcctcgcgat gctcgcggcg ctggtcaata
     9481 gcgggtattg gttcttcgaa gggtaagttt ggatttaagc cggatgcggc atcacatgcc
     9541 gcatcccttt tcgcttactt ccgttgcgcc gttaactcgg caatacggac gatcacctgc
     9601 accgcttttt ccataccttc cagagtcaca aactcatgct taccatgata gttgtaaccg
     9661 ccagtgaaca agttcgggca cggtaatccc ataaacgaca actgcgcgcc gtcggtaccg
     9721 ccgcggatcg gtttcagttc cggttcaata tcgcagtcac gcattgcctg ctgggcgata
     9781 tcgagaatat gcggatgctc aaccactttc tcgcgcatat tgtagtaact gtcttcaatc
     9841 accagttcaa tgtagcaatc aggatgtaac cctttgccca cttttttggc gatctccatc
     9901 attttacatt tacgcgcttc aaactgttta cggtcgaaat cacggatgat gtagtgcata
     9961 tcggcccgtt caacggtgcc tttcatgccc gccaggtgat agaaaccttc atagccttct
    10021 gtcatttccg ggctttcatc cgccggaact tccgcatgaa tacgtgccgc cagcgacagc
    10081 gcatttacca tcactccttt cgccgtgccc ggatgaacat tgttaccgac aattttgata
    10141 ttgaccgatg cggcgttgaa gttttcaaac tccagttcgc ctacgccacc accgtcaaca
    10201 gtgtaagccc agcgggcatc gaaggcatca acatcaaaat gtttcgcccc tttgcccact
    10261 tcttcatccg gggtaaaggc gacgcgaata tcaccatgcg gaatgttttt ctgttgcaat
    10321 accgccagcg cggtcatgat ttctgcaata cctgctttgt catcggcacc taacaaggtt
    10381 ttaccatcgg tggtaatcaa tgtctgaccc agtagctgat gcagcaccgg gaacataacc
    10441 ggtgataaaa cttcatcgcc gatacccagc gcaatatcgc caccgcgata gttttcaaca
    10501 atttgcggat taacattttt gccgctgcaa tccggtgagg tatccacatg agaaataaag
    10561 ccaatcgccg ggatatcgcc agggacgtta gccggtaacg tcgccatcaa agtgcccttc
    10621 tcacttaagg tcacattgat aagccccatt tcttcgagct gctctttcag cagatgcaat
    10681 aacttccatt ggccttccgt gctgggaacc tgtctcaccc ctgcttttga ttgggtatcc
    10741 agagacacgt agttcaaaaa tcgctcaagt agtttatcca tgtagtcacc ctcacttttt
    10801 gtgacaacat tattaagaag caagaaaaga caaatattgc gtcaggtcac ttttacccct
    10861 gcaagcggga atatttatca gcattacctt aatgaatata aagc
//
LOCUS       DAJVUY010000141        10899 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.141, whole genome shotgun sequence.
ACCESSION   DAJVUY010000141 DAJVUY010000000
VERSION     DAJVUY010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10899
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.141"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            296..1171
                     /locus_tag="OQQ72_003281"
     CDS             296..1171
                     /locus_tag="OQQ72_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HCS2012907.1"
                     /translation="MRKFILISMITLASVSLGACRQNATIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKNMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1179..1955
                     /locus_tag="OQQ72_003282"
     CDS             1179..1955
                     /locus_tag="OQQ72_003282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000981087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCS2012908.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSGTLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2124..4385
                     /locus_tag="OQQ72_003283"
     CDS             2124..4385
                     /locus_tag="OQQ72_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS2012909.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4454..5629
                     /gene="senB"
                     /locus_tag="OQQ72_003284"
     CDS             4454..5629
                     /gene="senB"
                     /locus_tag="OQQ72_003284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HCS2012910.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            6088..6438
                     /locus_tag="OQQ72_003285"
     CDS             6088..6438
                     /locus_tag="OQQ72_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS2012911.1"
                     /translation="MPSGRHTARIRTGHDSGTVSPFVHSTLSPLVPVYPVFITVIADH
                     DKPQPSGCLLESQGSLCPICRQRITHETGWNVHHKVKKVMGGGEELSNLVLLHPNCHR
                     QLHSCEAGSLKKGL"
     gene            6581..6802
                     /locus_tag="OQQ72_003286"
                     /pseudo
     CDS             6581..6802
                     /locus_tag="OQQ72_003286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6823..6885)
                     /locus_tag="OQQ72_003287"
                     /pseudo
     CDS             complement(6823..6885)
                     /locus_tag="OQQ72_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7336..8748
                     /gene="ospC1"
                     /locus_tag="OQQ72_003288"
     CDS             7336..8748
                     /gene="ospC1"
                     /locus_tag="OQQ72_003288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HCS2012912.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(8852..9000)
                     /locus_tag="OQQ72_003289"
                     /pseudo
     CDS             complement(8852..9000)
                     /locus_tag="OQQ72_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9076..10773
                     /gene="ospD3"
                     /locus_tag="OQQ72_003290"
     CDS             9076..10773
                     /gene="ospD3"
                     /locus_tag="OQQ72_003290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HCS2012913.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGKLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
BASE COUNT         3389 a         2297 c         2300 g         2913 t
ORIGIN      
        1 ttttcttcga catgtacatc aggcgcggaa ctcatcgggg cgcgggaatg aaatcccatt
       61 cagactccgg atagattcaa gcaagcccac ttatcgtcaa aatcggtgtt gcaaaaacgg
      121 gagtgaccat agatccgttt tccaagcgga ccccataata tcggctggta aacatcactc
      181 gctagtgcat tctttttgtt ggtaatgata attatttaca tttattcttt gatgttttat
      241 cataattaat gttttatcaa taaatatatg gaaatatatt gtttcagatg ggaatatgag
      301 aaagttcatc cttatttcta tgataacgtt agctagtgtt agtctgggag cctgcagaca
      361 gaatgccacc ataaagcagg atgcgccagg gcagaaagct ttcctgattg acgggcagat
      421 ttacgatttg cacagtggca aaattatttc tagcagcgag cttttggcgg atcttgctac
      481 cgctcgacat cttattattg gtgaaaaaca cgataatgcc gagcatcatc agattgagct
      541 ttggcttatt caaaatctgc tcatccagcg accacagggg agtgtgttgc ttgagatgtt
      601 gacgtcagac caacagcccc gagttaacca agttaaatgt tggctgaaag ataatcctgt
      661 ggttcgagat agccgtgttc aggaactact taactggcaa aaagggtggt cctgggagat
      721 gtatggcgac atcgtcatgc agctattacg tgggccttac ccgctgctca atgccaacat
      781 tggccgggag cagatgttgg cactgtacaa aaaaaacgaa tttcctaaag gaaaaaaatc
      841 cactgcacct gtggtacaag aagctctgcg tgaaaccatc atagctatgc atgaaggcaa
      901 ccttgaaagc cagcaactga cgtcaatgct ctctgttcag cagcagcggg atcgctacat
      961 ggcccgccag cttctgagtg ccccggtacc gtcgttgttg attgcaggtg gttatcacgc
     1021 gtcaaaaaac atgggcgtac cgttacacat ggaagatctt gccaccggca cccatccagt
     1081 ggtgttgatg cttgcagaaa aaggaatgaa catcacagta gatcatgctg actacgtgtg
     1141 gtttgtagcg ccagatacaa caaaaaggta aaccatggat gatgaatatt ctccacttcc
     1201 cacagtcggt aaaatggagc agctggttta tctgttctct actgcttcat ggactgattt
     1261 tccttacgtt tatctggcgt ttttccgaag ttcagcccgc tatgtctcct gcaccggcga
     1321 tcatgctgca atgggcagaa attatagagg ctccttcttc tccactttcg cttccggtgg
     1381 gaatcgctca acaggagtcc gcagtgacag aagaaaagca acaaactgag gacagacaac
     1441 aacgtcctgt cactgaagac agtgatgcaa ccattgaaat aactaggaag aaaaagtcat
     1501 ccgatggaga aaagaaaaag acacgtccac ctcgtaagat aaaggctcaa accagcgaca
     1561 gcaaccccac agccgtttcc agtaatgctg cacctcaggc tctggtcgaa tcgtcccgta
     1621 ttgctgcgcc ttttaacagt gactcaacaa agcgagataa ttctgaggca tcttgggaaa
     1681 gcagagtaaa aggccacctt aaccgttata aacgttaccc tggcgatgcc agaaaacgtg
     1741 cacgaaccgg cacagccgtt gtgactttta ccgtaaacac ggaaggcact attgtcagta
     1801 gtttcttgga aatctcgtca ggaacccttt ctcttgaccg cgaagctatt gctgttttag
     1861 aacgcgctca accacttccc aaaccaccgc ctgaaatatt ggagggagga ttatttaaag
     1921 taaaaatgcc gattaccttt aagttgaagg agtaaaggga taattggccg ttcaagttca
     1981 tttaactgaa atttaatttt catttttatg ctgaacattt tatcaaactt ttccactgtc
     2041 gaaaaaatca aaaagacagt agatcataat taataaacaa atagttatac ttatctttat
     2101 taatattata tccaaggaaa tttatgaacg ttataaaact ggctatcggc tcaggcatat
     2161 tattgctcag ctgcggtgct tactcacaat ccatcagtga aaaaactaat tccgacaaaa
     2221 aaggagcggc agaattcagt ccgctcagcg tttctgtcgg gaagacgacc agtgagcagg
     2281 aagctctcga gaaaacaggc gcgaccagtt cccggacaac ggacaaaaac ctgcaatcac
     2341 ttgacgcaac agtgcgtagt atgcctggta cttatactca aatagatcct ggtcagggag
     2401 caatcagtgt gaatattcga ggcatgagcg gatttggtcg tgtaaacact atggtcgatg
     2461 gtattaccca gagtttttac ggaacctcta cctccggaac aacggcgcat ggttcaacta
     2521 acaatatggc tggcgtactt atagatccta acttactggt agcagttgat gttacacgcg
     2581 gtgacagcag tggctctgaa gggatcaacg cccttgccgg tagtgcaaat atgcgtacta
     2641 ttggcgttga cgatgtaata tttaacggta atacatatgg ccttcgttca cgtttctctg
     2701 tcggtagtaa tgggctggga cgcagcggaa tgatcgccct tggtggaaaa agcgacgctt
     2761 ttacggatac gggaagcatt ggcgttatgg ctgctgtgag tggcagttct gtgtactcta
     2821 atttctcaaa tggttctgga attaacagca aagagtttgg ttatgataaa tatatgaagc
     2881 agaaccccaa atcccaactg tataaaatgg atatcagacc agacgaattt aacagcttcg
     2941 aactttccgc tcgaacctat gaaaataaat ttacacgtcg tgatataacc agtgacgact
     3001 attacattaa atatcattac accccttttt ctgaattaat tgactttaac gtaacggcca
     3061 gtaccagtcg cggtaatcaa aagtatcgtg atggctcgct gtatactttc tacaaaacct
     3121 cagcgcaaaa tcgttctgac gcgctggata tcaacaatac cagccggttc actgtcgcgg
     3181 acaatgaact ggagtttatg ctgggcagca aactgatgcg tacccgctat gaccggacca
     3241 ttcactcagc ggcgggcgac ccgaaagcga atcaggaatc gatcgagaac aatccgttcg
     3301 caccctccgg ccagcaggat atttcagcgc tgtataccgg gctgaaggtt acgcgcggca
     3361 tctgggaggc agatttcaat ctcaactaca cacgtaacag gatcacaggg tacaagcccg
     3421 cctgcgattc acgcgttatc tgcgtgccac agggtagcta cgatattgac gataaagagg
     3481 gtggcttcaa cccttcagtt cagctttctg ctcaggtaac accatggctt cagccgttca
     3541 ttggctacag caaatccatg cgcgccccga acatccagga gatgttcttc tctaattcag
     3601 gaggcgcatc catgaaccca ttcctgaagc ctgaacgtgc agaaacctgg caggcgggtt
     3661 ttaacattga taccagagat ttactggtcg aacaggatgc cctgcgcttt aaggctctgg
     3721 cgtaccgcag caggatccag aactacatct acagcgagtc ttatctggtt tgttctggag
     3781 gtcgtaaatg cagtatggct gaggtgattg gcaatgactg ggagggcatt agcgatgaat
     3841 acagcgacaa tatgtacatc tacgttaact cggcaagcga cgttattgca aagggcttcg
     3901 aactggagat ggattatgat gcaggttttg cttttggccg actctctttc agccagcagc
     3961 aaacagacca gccaacctcc atcgccagca cctactttgg cgcaggggat atgaccgaac
     4021 tgcccagaaa atacatgacg ctggatactg gtgttcgctt cttcgataac gcgttgaccc
     4081 tgggcactat cataaaatac acaggcaagg ctcgtcgcct gtcgcctgat tttgagcagg
     4141 acgaacatac cggcgcaata atcaaacagg atttgccgca gatcccaacg attatcgatc
     4201 tctatggtac ttacgagtac aaccgcaacc tgacactgaa actttcggta caaaacctga
     4261 tgaacagaga ttattcggag gcgctgaata agctcaacat gatgccaggt cttggtgacg
     4321 agagccaccc agccaattcc gcgcgtggca gaacatggat atttggcggg gacattcgtt
     4381 tctgatgaca atttccgcca ggttcagaca atacgttttc tctcttatgt caattttatt
     4441 gcaggaacga aaaatgaata tttttacttt atccaaagca ccgctatact tgttaatttc
     4501 actattttta cccacgatgg ccatggctat cgatccacct gaacgcgaac tttcgcgatt
     4561 tgccctgaaa acgaattacc ttcagtcccc tgatgaaggc gtctatgaac tggcgtttga
     4621 taatgccagt aaaaaggtgt ttgcagcagt caccgatcgt gtaaatcgtg aagccaataa
     4681 aggctatctg tattcgttta attcagattc gctgaaagtc gaaaataaat acacgatgcc
     4741 ataccgggca ttttcgctgg cgataaatca ggataaacat cagctctata tcggacacac
     4801 ccagtcagcg tccctgcgta tcagtatgtt tgacacccca accggtaaac tggtaagaac
     4861 cagcgacagg ttaagtttta aagcggcaaa cgctgcagat tcgcgttttg agcatttgcg
     4921 ccatatggtt tacagccagg attccgatac cctgtttgtg agttatagca atatgctgaa
     4981 aacggccgag ggcatgaagc ctctgcataa gctgttaatg ctcgacggga cgacgcttgc
     5041 cttaaaaggc gaggttaagg atgcttacaa aggtacagcg tatggtctga cgatggatga
     5101 aaaaacacag aaaatctacg ttggcggaag agattacatc aacgaaattg atgcgaaaaa
     5161 tcagacgctg ctgcgtacca tcccgttgaa agatccgaga ccacaaatca caagtgtgca
     5221 gaatctggcg gtggactccg cttctgaccg tgcctttgtg gtggtattcg accatgacga
     5281 tcgttccggt acaaaagatg gcctctatat ttttgactta cgcgacggta aacagcttgg
     5341 ctatgtgcac acaggagccg gagctaacgc ggtgaaatac aatccgaaat ataacgaact
     5401 gtatgtcacc aacttcacta gcggcaccat cagcgtagtg gatgccacca aatacagcat
     5461 cacccgtgaa tttaacatgc cggtctaccc aaaccagatg gtgttgtcgg acgatatgga
     5521 taccctttac attggcatca aagaaggctt taaccgcgat tgggatcctg atgtgtttgt
     5581 ggaaggagct aaagaacgta ttctgagcat tgatttgaaa aagtcgtgat cgggggaaaa
     5641 aacatgggat aaaaactccg ttattccact aaactggccg gactaggaaa agcaaacatc
     5701 tctgtcctgc cggtacgcct gttacgccgc tccatgaggc tgaggaatct ccagaaaacg
     5761 agacaggcac agcattgtac gatcaactga tttgtgccaa taattcaatg aaatcacagc
     5821 tatgcctgtt cacgtatagg aaattgaaaa actaagcgat accactgtcc gcgtcttatg
     5881 cctcgtgcgg taagctgttt ttcacatcac gccggtgttt ttttctttct gtggacggtt
     5941 ttaatactgt aatcggccgt tttttatact taccccgatt cccgggcgca cttatcctgc
     6001 atcaccccgg gatatacctc agcagactga tatcccgcgc gtttttcttc agcccctcca
     6061 cattcagtcc cgcgatgacc cggcggtata ccatccggcc gccacacagc acgcattcga
     6121 acgggtcacg actcaggaac tgtttcacca tttgtgcata gcacactttc gccactggtt
     6181 ccggtttatc ctgtttttat aacggtaatt gcagaccatg acaaaccgca gccgtcaggc
     6241 tgcctactcg agtcacaagg ctctctgtgt ccgatatgcc ggcagcgcat tacccatgaa
     6301 actggctgga acgtacacca taaggtgaag aaagttatgg ggggcggtga agaattatct
     6361 aaccttgtct tgttacatcc aaattgccat cgacagttac acagttgtga agccggctct
     6421 ctcaaaaagg gcttataaag gcttgagcgg tgtaccggga aaccggtatg caccgttctt
     6481 aggggagggc agtccagcaa tgaactgtcc ttacccgaca aacatccaaa acgaacggaa
     6541 cgtgctggaa tccgcatata acccgttgta aagtgaggaa atggacacct cacttgctca
     6601 tgagaacgcc cgcctgcggg cactgttgca gacgcaacag gacactatcc accagatggc
     6661 tgaatacaac cgcctgctct cacagcggat ggcggcttat gcttccgaaa tcaaccgact
     6721 gaaggcgctg gttgcgaaac tgcagcgtat gcagttcggt aaaagcccag aaaaacttcg
     6781 cgcaaaaacc gaacggcaga ttccattttc acgggcgatc tacgccacac aggctctggg
     6841 ttgcagtgac tgctccatta aggcgatttt gaactcataa gggaagtaac aaaaaaactg
     6901 caaaagtaca ataattatat atggccaaac taacctctat taaaaaaaca tcagtttttc
     6961 acacttagtt gagcttcatg aaaaaatcat cgaggatttc attgcagaat acacattcca
     7021 ctaactggaa gcactccata agaggaatca gagaaagtat cgttttttta tagtaaaatt
     7081 cattgctgtt caataaaatt gatataatta ttaaattatg gaaataattt cacaaaaaag
     7141 attaacttga gttcttaagc atcggatttt agatattttg aaatatctgg catcacataa
     7201 catcaaaagt atataatacc cttatctaat tacatgcagt atattgtata tatactcaaa
     7261 aattgtaatt cataccctac tatatcttgt ggggaaagat attaattaaa actgttttca
     7321 tataaggttc attttatgaa tatatcagaa acactgaact cagcaaatac ccaatgcaat
     7381 atagattcta tggataacag attacataca ttgtttccaa aagtgacatc agtgcgaaac
     7441 gctgcacaac aaactatgcc agatgaaaaa aatttaaaag atagtgcaaa tattattaaa
     7501 gatttcttta ggaaaactat agcagcacaa agttatagta gaatgttctc tcaaggctct
     7561 aactttaaat ctttaaatat agcaattgat gcaccatcag acgctaaagc ctcatttaag
     7621 gctattgagc accttgacag attatcgaag cattatatat ctgaaataag ggaaaaactt
     7681 catcctcttt ctgcagagga actcaatttg ctttcgctaa ttattaattc tgatttaatc
     7741 ttcagacatc aaagtaattc tgatttgtct gataaaattt taaacattaa gtcattcaat
     7801 aaaattcagt ctgaaggaat atgcacaaaa cgaaacacat acgctgatga tataaaaaaa
     7861 atagctaatc atgactttgt gttttttggc gttgaaatct ctagccatca gaaaaaacac
     7921 cccctgaata caaaacatca cactgttgat tttggtgcaa atgcgtatat cattgatcat
     7981 gactctccat atggatatat gacattaacc gatcactttg ataatgctat tccacctgtt
     8041 ttttaccatg agcaccaatc atttttagat aaattttcag aggttaataa agaagttagt
     8101 cgatacgtac atggaagtaa aggaattata gatgtaccaa tattcaatac taaagatatg
     8161 aagttagggc tcggattata cctgattgac tttattagaa aaagtgaaga ccaaagcttc
     8221 aaggagtttt gctatggaaa aaatcttgcc cctgtggatc tggatagaat cataaacttt
     8281 gtttttcagc cagagtacca tatacctagg atggtaagta cagaaaactt caaaaaagtt
     8341 aagattagag aaatatcctt agaggaggct gttacagcat ctaattacga agaaattaac
     8401 aagcaggtca ctaacaaaaa aattgctctc cagactcttt ttctttcgat tactaatcaa
     8461 aaagaggatg tcgccttata tatattatct aattttgaga taactagaca agatgttatt
     8521 tccataaagc atgagttgta tgatattgag tatctactta gcgctcataa ttcaagctgt
     8581 aaagtacttg agtattttat caataaggga ttggttgatg taaacacaaa gttcaaaaaa
     8641 actaatagtg gggattgtat gttggataac gcaataaaat atgagaatgc agaaatgata
     8701 aaactattat tgaaatatgg tgcaacatct gacaataaat atatttaatc aaaattgaat
     8761 atcgtttagc aaaaggcagt atttgcacaa aatatcgata tattgtttat tgtcagtatg
     8821 gctcaatgtg ataatagttg gaaagtttga tgggtttcgc cccgttgtag cggtagtcga
     8881 gctggaaggt cttcaggcac tgcttacagc gatagagcag cccccctgaa ctggaatggc
     8941 cgttccggat accccctgag tttcagagta acggggacaa accacatcaa tctttgccat
     9001 caatcatcca aagggcaaag agtacaacaa cactaagtct gcgtcacaac ccatcaatga
     9061 aaggaatata tacatatgcc atcagtaaat ttaatcccat caaggaaaat atgtttgcaa
     9121 aatatgataa ataaagacaa cgtctctgtt gagacaatcc agtctctatt gcactcaaaa
     9181 caattgccat atttttctga caagaggagt tttttattaa atctaaattg ccaagttacc
     9241 gatcactctg gaaaacttat tgtctgtcga cacttagctt cctactggat agcacagttt
     9301 aacaaaagta gtggtcacgt ggattatcat cactttgctt ttccggatga aattaaaaat
     9361 tatgtttcag tgagtgaaga agaaaaggct attaatgtgc ctgctattat ttattttgtt
     9421 gaaaacggtt catggggaga tattattttt tatattttca atgaaatgat ttttcattcc
     9481 gaaaaaagca gagcactaga aataagtaca tcaaatcaca atatggcatt aggcttgaag
     9541 attaaagaaa ctaaaaatgg gggggatttt gtcattcagc tttatgatcc caaccataca
     9601 gcaactcatt tacgagcaga gtttaacaaa tttaacttag ctaaaataaa aaaactgact
     9661 gtagataatt ttcttgatga aaaacatcag aaatgttatg gtcttatatc cgacggtatg
     9721 tctatatttg tggacagaca tactccaaca agcatgtcct ccataatcag atggcctaat
     9781 aatttacttc accccaaagt tatttatcac gcgatgcgta tgggattgac tgagctaatc
     9841 caaaaagtaa caagagtcgt acaactatct gacctttcag acaatacgtt agaattactt
     9901 ttggcagcca aaaatgacga tggtttgtca ggattgcttt tagctttaca aaatgggcat
     9961 tcagatacaa tcttagcata cggagaactc ctggaaactt ctggacttaa ccttgataaa
    10021 acggtagaac tactaactgc ggaaggaatg ggaggacgaa tatcgggttt atcccaagca
    10081 cttcaaaatg ggcatgcaga aactatcaaa acatacggaa ggcttctcaa gaagagagca
    10141 ataaatatcg aatacaataa gctgaaaaat ttgctgaccg cttattatta tgatgaagta
    10201 cacagacaga tacccggact aatgtttgct cttcaaaatg gacatgcaga tgctatacgc
    10261 gcatacggtg agctcattct tagcccccct ctcctcaact cagaggatat tgtaaatttg
    10321 ctggcctcaa ggagatatga caatgttccc ggacttctgt tagcattgaa taatggacag
    10381 gctgatgcaa tcttagctta tggtgatatc ttgaatgagg caaaacttaa cttggataaa
    10441 aaagcagagc tgttagaagc gaaagattct aatggtttat ctggattgtt tgtagccttg
    10501 cataatggat gtgtagaaac aattattgct tatgggaaaa tacttcacac tgcagacctt
    10561 actccacatc aggcatcaaa attactggcg gcagaaggcc caaatggggt atctggatta
    10621 attatagctt ttcaaaatag gaattttgag gcaataaaaa cttatatggg aataataaaa
    10681 aatgaaaata ttacacctga agaaatagca gaacacttgg acaaaaaaaa tggaagtgat
    10741 tttctagaaa ttatgaagaa tataaaaagc tgaatattat ctcgtggtga tacactgaat
    10801 ttgaggtaac cggctcattt aaaccgtctg gtctgttacc tccggttcca caaaaataat
    10861 gtccatcatt ttgaagtgga cactatcgta tggaatacc
//
LOCUS       DAJVUY010000142        10697 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.142, whole genome shotgun sequence.
ACCESSION   DAJVUY010000142 DAJVUY010000000
VERSION     DAJVUY010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10697
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.142"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(88..237)
                     /gene="hokB"
                     /locus_tag="OQQ72_003291"
     CDS             complement(88..237)
                     /gene="hokB"
                     /locus_tag="OQQ72_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokB"
                     /protein_id="HCS2012914.1"
                     /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM
                     ACTSR"
     gene            636..2249
                     /gene="trg"
                     /locus_tag="OQQ72_003292"
                     /pseudo
     CDS             636..2249
                     /gene="trg"
                     /locus_tag="OQQ72_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415938.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein Trg"
     gene            complement(2287..3209)
                     /locus_tag="OQQ72_003293"
                     /pseudo
     CDS             complement(2287..3209)
                     /locus_tag="OQQ72_003293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            3426..4769
                     /locus_tag="OQQ72_003294"
     CDS             3426..4769
                     /locus_tag="OQQ72_003294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS2012915.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GGPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEYRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            4994..6649
                     /gene="opgD"
                     /locus_tag="OQQ72_003295"
                     /gene_synonym="mdoD"
     CDS             4994..6649
                     /gene="opgD"
                     /locus_tag="OQQ72_003295"
                     /gene_synonym="mdoD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein OpgD"
                     /protein_id="HCS2012916.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS"
     gene            6789..7013
                     /locus_tag="OQQ72_003296"
     CDS             6789..7013
                     /locus_tag="OQQ72_003296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HCS2012917.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            7076..7612
                     /gene="rimL"
                     /locus_tag="OQQ72_003297"
     CDS             7076..7612
                     /gene="rimL"
                     /locus_tag="OQQ72_003297"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HCS2012918.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(7607..8587)
                     /locus_tag="OQQ72_003298"
                     /pseudo
     CDS             complement(7607..8587)
                     /locus_tag="OQQ72_003298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8711..9703
                     /gene="tehA"
                     /locus_tag="OQQ72_003299"
     CDS             8711..9703
                     /gene="tehA"
                     /locus_tag="OQQ72_003299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HCS2012919.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE"
     gene            9700..10293
                     /gene="tehB"
                     /locus_tag="OQQ72_003300"
     CDS             9700..10293
                     /gene="tehB"
                     /locus_tag="OQQ72_003300"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HCS2012920.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK"
     gene            10596..>10697
                     /locus_tag="OQQ72_003301"
     CDS             10596..>10697
                     /locus_tag="OQQ72_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HCS2012921.1"
                     /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSGF"
BASE COUNT         2737 a         2495 c         2712 g         2753 t
ORIGIN      
        1 aacatgcact aactgaagtg taaaaggggt gccatgagaa aatgaatctg ctagtcagat
       61 gcgcggggaa aatccccgcg cttgccctta cctggacgtg caggccatga gcgcagcaac
      121 ctccttatca ccgtcccgga accgcagttc gtagagcgtt tgtcgggtca ggagtgtgaa
      181 tgtcagaatc gtaatgcaga taatgagcag acacaccacc agagggttgt gcttcatagc
      241 ctttctcctt gccggatggc gggtaagagg ctaagatctg aattgctagg ttcattcgtt
      301 ggcctcggtt gatagaaata tcggtcgggg ccttcgtctt tctgattccc ggttagcctg
      361 aaaacagaaa gtctcaggca cccgcaggca tcctatgagg tttccttagg gacgaaaata
      421 atcacttcac gaaattgcgt gctgttttcc agaatttttc gtcattcgga ttagccagtt
      481 tagccattcg ttactctctt cattccaata gcattaattt tctctgcaat aattgttgta
      541 aaaatgtgac gcaaagaggt ttttggtcat aagtaattac cgtcaagtgc cgatgacttt
      601 ctatcaggag taaacctgga cgagagacaa cggtaatgaa tacaactccc tcacagcgat
      661 taggtttttt gcatcacatc aggctggttc cgttatttgc ctgcattctt ggcggtatct
      721 tagttctatt cgcattaagt tctgctctgg caggccgatc gcgatcagcg tgatgttact
      781 gcggagattg agattcggac cgggttagcg aacagttcag attttttgcg ttcagcccgg
      841 atcaatatga ttcaggccgg ggctgcgagt cgtattgcgg aaatggaagc aatgaagcga
      901 aatattgcgc aagccgaatc ggagattaaa cagtcgcagc aaggttatcg tgcttatcag
      961 aatcgaccgg tgaaaacacc tgctgatgaa gccctcgaca ctgaattaaa tcaacgcttt
     1021 caggcttata tcacgggtat gcaacctatg ttgaaatatg ccaaaaatgg catgtttgaa
     1081 gcgattatca atcatgaaag tgagcagatc cgaccgctgg ataatgctta taccgatatt
     1141 ttgaacaaag ccgttaagat acgtagcacc agagccaacc aactggcgga actggcccat
     1201 cagcgcaccc gcctgggtgg gatgttcatg attggcgcgt ttgtgcgtgc cctggtcatg
     1261 acgctgataa catttatggt gctacgtcgg atcgtcattc gtccactgca acatgccgca
     1321 caacggattg aaaaaatcgc cagtggcgat ctgacgatga atgatgaatc ggcgggtcgt
     1381 aatgaaatcg gtcgcttaag tcgtcattta cagcaaatgc agcattcact ggggatgaca
     1441 gtagggactg ttcgacaggg cgcggaagag atttatcgtg gcaccagcga aatttcagct
     1501 ggcaatgcgg acctgtcatc tcgcaccgaa gaacaagcgg cggctatcga acaaactgcc
     1561 gccagcatgg agcaactcac tgcgacggtg aaacagaatg cggataacgc gcatcatgcc
     1621 agcaaactgg cgcaagaggc ttctattaaa gccagcgatg gcgggcagac ggagtaaaaa
     1681 cgatgggcgc tatctccacg agttcgaaga aaatttctga gatcaccgcc gtcatcaaca
     1741 gtattgcttt ccagacgaat attctggcac tgaatgctgc cgttgaagcc gcgcgagcgg
     1801 gtgagcaagg gcgtggattt gccgttgtcg ccagcgaagt acggacactc gcaagtcgca
     1861 gcgctcaggc ggcgaaagag attgaaggct tgatcagtga atcagtcagg ttaattgacc
     1921 tggggtcgga tgaggtggca acggccggga aaaccatgag cactattgtt gatgccgtcg
     1981 cgagtgtcac acatatcatg caggaaatcg ccgccgcctc ggatgaacaa agtagaggca
     2041 taacgcaggt tagccaggcg atttctgaaa tggataaggt gacgcaacag aatgcttctc
     2101 tggtagaaga ggcctcagcg gcggcggtgt cccttgaaga acaggcggca cgattaactg
     2161 aggcggtgga tgtattccgt ctgaacaaac attctgtgtc ggcagaacct cgcggagcgg
     2221 gtgaaccagt tagtttcgct acggtgtgaa aatgttcaag gagggatcga cagatccctt
     2281 cacctttcag aacggcattg attttcgaat agcgttaatc atcaactggc aaccagaaga
     2341 gaacatcgca tctacgcggg tcagtattcc aatcggttcg cctgcaccat gtcccggaac
     2401 aggctgggcc accagcgtgg catgacgcag gtcgtctttt accgcgccag aagggacaaa
     2461 ccacacgtag tcgtattcaa ccgtaagttg acgagatagc gaagcagaca gcgtttcgat
     2521 acaacccgaa ggaattttac atccctggct ctgtactaat gcatctgaat gctggcgtgg
     2581 cgcagtgcct tctggtgata caacgaccgg ccatttcagc actcggctta gcgttacgtt
     2641 ctcctgaagt agcgggtgat tagggcggac aaccagcttc agcgattcaa gaaacagcag
     2701 ttcgtaatta agcccggtca tcagttcagg atctgacatc cgaccaatgc cgatatcgat
     2761 ttccccggtt ttcaaacccg ccagaatcat agggttactc attgtcgcaa cttgcaaggt
     2821 cgtctctttt tgttgctgat gaaactgacc tataaccgaa ggtaatatcc ccagtgccgc
     2881 agtaggtagt gcaccaatcc tgacgacatc attattaaga ccttctttac gatgaagcga
     2941 ctgtccggca gtgttgatgg cgtcaagaac tctgactgca tgcgttaaaa attgttcgcc
     3001 gggtaaggta agttgcgccc cctgacgacc acgctcaaac aagcgagcgc ccgtcagctg
     3061 ctacagttca ttcaatgtct tagagagcgc aggttgactc aaattaaggg tttcagccgc
     3121 gcccccaaag ttccttgttg tgcgacagct acgaatgtat gaaggtggcg caaacggatg
     3181 cgctgactaa acagactatt tttttccata agcgatgtta aaaacgaagc ggtgtcgctg
     3241 acaagtgaag ttgtttgatt atgataactt gattgcaaaa tataattaac aattaaagca
     3301 attgtgttac agcaaaatgg ataatattga tgttttcgcg gcgagatcac agtttgtaaa
     3361 ttcttcccgc cagagtgaat gcggttacct acactccaga ttactgacca ctggaggcag
     3421 acactatggc gaacagcatc acggcggatg agattcggga acagttttcg caggcaatgt
     3481 cagccatgta ccagcaagaa gttccgcagt acggcacgct gctggaactg gtagctgatg
     3541 tgaatctggc tgtgctggaa aacaatcctc aactgcacga aaaaatggta aatgcagatg
     3601 agctggcgcg actgaatgtt gaacgtcatg gggcgattcg cgttgggact gcacaagagc
     3661 ttgctactct tcggcggatg tttgccatta tggggatgta cccggtgagc tattacgatc
     3721 tctcgcaggc aggggggccg gtacattcga cagcatttcg gcccattgat gatgcttctc
     3781 tggcgcgtaa tcccttccgc gtttttacct ccttactccg ccttgagctt atcgagaacg
     3841 aaattttgcg ccagaaagcg gcggagattc tgcgtcagcg cgatatcttc accccacgtt
     3901 gtcgacaact gttagaggaa tatgagcagc agggcggttt taacgaaaca caggcacagg
     3961 aatttgtgca agaggccctg gaaacgtttc gctggcacca gtcagcaacg gtagatgaag
     4021 aaacctatcg cgccttgcac aacgaatatc ggttgattgc tgatgtggtc tgttttcctg
     4081 gatgccatat caaccacctg acgccacgta cgctggatat tgaccgggtg cagtcgatga
     4141 tgcctgaatg cggaattgaa cccaaaattc tcatcgaggg gccgccgcgc cgcgaggtac
     4201 cgattttact acgccagacc agctttaaag cactggaaga gacggtgttg tttgcggggc
     4261 agaaacaggg cacgcatacc gcgcgctttg gtgaaattga gcagcgtggc gtggcattaa
     4321 cgccgaaagg gcgacaactg tatgatgatc ttctgcgtaa cgctggaacc gggcaggata
     4381 atctcactca ccaaatgcat ttacaggaaa ccttccgcac ttttcctgac agtgagtttt
     4441 taatgcgtca gcaagggttg gcatggttcc ggtaccgtct gacgccttcg ggtgaggcgc
     4501 atcgtcaggc gattcatctt ggagacgatc cacagccttt aattgaacgt ggttgggtag
     4561 tggcgcaacc catcacctat gaagatttct tgcccgttag cgcggcgggg atcttccagt
     4621 caaatctggg taatgaaacg cagacacgca gtcacggtaa tgccagtcgc gaagcatttg
     4681 agcaggcgtt gggttgtccg gttttggatg agttccagct ttaccaggaa gcggaagaac
     4741 gcagtaaacg tcgctgtggt ttgctttaaa ttctgaccat ccgcctttgc aaaaatttgc
     4801 ctgattttac aaacgaatca ggctcatccc atcgacataa aaaaaatgcc gatttatgca
     4861 tattctctca gttcaacaat tggattatta ataaatattg tctagagtga gcggtcataa
     4921 ataagcactt tcttgccgct gaaaacgacc agcgcgggac cattcacaac accagaagga
     4981 ctcactttca ggtatggatc gtagacgatt tattaaaggt tcaatggcta tggccgccgt
     5041 gtgcggtacc agcggcattg cttctctttt ttctcaggcg gcattcgcgg cagattctga
     5101 tattgccgac gggcaaaccc agcgttttga cttctccatt ctacagtcaa tggcgcacga
     5161 cttagcgcaa acagcgtggc gtggtgcgcc tcgtccgtta cctgacacgc tggcgacaat
     5221 gacgccgcag gcttataaca gtattcaata cgacgccgaa aaatcgctct ggcataacgt
     5281 tgagaaccgt caactggacg ctcagttctt ccatatggga atgggattcc gtcgccgcgt
     5341 tcgtatgttt tctgtagatc cagcaacaca tctggcgcgt gaaattcact ttcgcccgga
     5401 gttgttcaaa tacaacgatg cgggtgttga tacaaaacaa ttagaagggc aaagcgatct
     5461 cggctttgcc ggttttcgcg tgtttaaagc ccccgaactg gcgcgccgtg atgtagtatc
     5521 atttctcggc gcgagttatt tccgcgccgt tgatgataca tatcaatacg gtttgtcggc
     5581 ccgcggcctg gcgatcgaca cttacaccga cagtaaagaa gagttccccg actttaccgc
     5641 cttctggttt gatacggtaa aaccgggggc aactaccttt accgtttatg cgttgctcga
     5701 tagcgccagc attactggtg cctataagtt cactatccat tgtgagaaaa gtcaggtgat
     5761 tatggatgtg gaaaatcacc tgtatgcgcg caaagacatt aaacagctgg gcattgcgcc
     5821 gatgaccagt atgttcagct gcggtactaa tgaacgtcgg atgtgcgata caattcatcc
     5881 gcaaattcat gactctgatc gtctgtccat gtggcggggc aacggcgagt ggatttgccg
     5941 tccgctgaat aatccgcaaa aattgcagtt caatgcttac accgacaaca acccgaaagg
     6001 gtttggttta ttgcaactgg atcgtgactt ctcccattat caggacatta tgggctggta
     6061 taacaaacgc ccaagtctgt gggtggaacc gcgtaacaag tggggtaagg gcaccatcgg
     6121 cctgatggaa atcccaacaa cgggcgaaac gctggataac attgtctgtt tctggcagcc
     6181 agaaaaagct gtaaaagcag gtgatgagtt tgcattccag tatcgtctgt actggagtgc
     6241 gcaaccgcct gttcattgcc cattagcgcg cgttatggcg acgcgtaccg gcatgggcgg
     6301 tttcccggaa ggttgggcgc caggtgaaca ctatcccgaa aaatgggcgc gtcgttttgc
     6361 cgtcgatttc gttggtggtg atctgaaagc tgccgcgcca aaaggcattg agccggtgat
     6421 tacgctttcc agtggggaag cgaagcaaat cgaaattctc tatattgaac ccatcgatgg
     6481 ttatcgtatt cagtttgact ggtatccgac ttcggactcc actgatccgg tcgatatgcg
     6541 gatgtatcta cgttgtcagg gggacgctat cagtgaaaca tggctgtatc agtatttccc
     6601 gccagcgccg gataaacgtc agtatgttga cgaccgcgtg atgagttaat cgttttttct
     6661 tcggcacctt cttcgggagg tgccgtctgg ttaaacacga tcccgctcgc atttttccct
     6721 aagttaaatg agtaatctga tggtgtgtat ttcagataca ccttgtcagc cactaacagg
     6781 gagtgcgtat gtttccagaa taccgagatt taatatcccg tctgaaaaac gaaaatcctc
     6841 gctttatgtc cttgttcgat aaacacaata aacttgatca tgaaattgcc agaaaggaag
     6901 gtttcgacgg tcgagggtac aatgcggaag tggtccgcat gaaaaaacaa aagctacagt
     6961 taaaagatga gatgctcaaa atcctgcagc aggagagcgt caaaggggtg taaactttcc
     7021 taagccgcca gccaggcggc ttttttaaca acagcatgga ttgactggag ataagatgac
     7081 tgaaacgata aaagtaagcg aatcacttga attacatgct gttgcggaaa gtcacgtcac
     7141 acctctttat cagttaatct gtaaaaataa aacctggtta cagcagtcgc taaactggcc
     7201 gcagttcgtt cagagtgaag aggacacgcg aaaaacggtg cagggtaatg tgatgttgca
     7261 tcaacgcggc tatgccaaaa tgttcatgat tttcaaagaa gatgaactta tcggcgttat
     7321 ctcgtttaat cgtattgaac cactgaataa aactgctgaa atcggctact ggctggacga
     7381 atctcatcag gggcagggga tcatttctca ggcgctgcag gcattgattc atcattacgc
     7441 tcagtctggt gaacttagac gcttcgtgat caaatgtcgg gtggacaatc cgcaaagcaa
     7501 ccaggtcgct ttgcgcaatg gttttatcct tgaaggttgc ctgaaacagg ctgagttcct
     7561 gaatgatgcc tatgatgatg tgaacttata cgcgcgtatt atcgattcat aataaccctg
     7621 ccagcggcgt tcgcgtaatg cgctcctcgc cgttaatgac ttttggacca cggacatgaa
     7681 ccgtgtcgcc atcaaaggct tcaacgacgg cgtggtcggt taactccaca tggttttcaa
     7741 ttatcaccgc acctgaaata cggctctcac cttgtattac aacgtgctcg tcgagcagaa
     7801 tcggttcacc acgtaccacg gcatttccgc caatcaagac atgatgtttt aacacacaat
     7861 taccttccac aatggcatat tccgccacct gcgaactgta atgaatcgtc ggaatggcat
     7921 cttcttctat gccagctttc acctgcgcgt gaccgtagac tttagcgcaa tcgcatagcc
     7981 agacgttgtt ctcttcatta ccttcaacac tggcaaaatc aaaaacttcg gcgcgatgtt
     8041 caataaaagc ataccggacg acggcatcgc cataaatttg tgcctggtgg acaatacgcg
     8101 aggcgctaac ccttgcgcga tcataaattt ggagcaggag ttgatggtcg ggcgttaagc
     8161 cttgtgcggc gacgatcata gaatgttgat caattaaggc gtgaccaaat attctacatt
     8221 gcccgtaaac taatgagtca tgaatggtga cactgtcact tatatatgca ccctgactga
     8281 tttcactatt atcgatccag acgttatccg ttgcgtaaac ctctccccac agcacgctgg
     8341 tgccggtgat acgcgtatta ccagaaatca ccgttccgcc gaacgcaata gcattctggt
     8401 cgtaaatcca gcaatttcct tcctatgcta acaccgtttc gcgatcgatc cagccgccag
     8461 cggttcctgc tatcacatcg ttaaaatcgc taatggcgat aatctgccgt aataacacac
     8521 tttttttagt gccatcttcc tgataactaa aggctcgctg ttcttcactt agacgatatt
     8581 tgcgcatagc gttttctcac aggtgactta ctatgaccgt agcaaattct gcggctctgg
     8641 ctatgctcga gaaaattcca taaaatgcat ttcaaatata ctttataaat taaacaaaat
     8701 gagtaagaag atgcagagcg ataaagtgct caatttgccg gcaggctact ttggtattgt
     8761 gttggggacg atagggatgg gatttgcctg gcgctatgcc agccaggttt ggcaggtcag
     8821 ccactggtta ggggatgggc tggtgattct ggcgatgatc atctggggat tattaactag
     8881 cgcatttatt acccgactca tacgctttcc gcatagcgtg ctggcggaag ttcgccatcc
     8941 agtgctgagc agttttgtga gtttgtttcc ggcaacgacg atgctggtgg cgattggttt
     9001 tgttccgtgg tttcgcccac tggcggtgtg cctgttcagt tttggtgtcg tggttcagtt
     9061 ggcttatgcc gcctggcaaa ctgcgggatt atggcgcgga tctcaccctg aagaagctac
     9121 catgcctgga ctgtatctgc cgacagttgc caacaacttt atcagcgcaa tggcctgtgg
     9181 tgcgttgggc tacaccgacg ccggtctggt gtttttaggc gcaggcgttt tctcatggct
     9241 aagccttgaa ccggtgatat tgcagcgtct gcgcagttcg ggagaattac ccacggcact
     9301 gcggacatca ctcggcattc agctcgctcc tgcgctggtg gcctgtagtg cctggttgag
     9361 cgtcaacggc ggcgagggtg atacgctggc gaaaatgctt tttggttatg gactgctgca
     9421 actgctgttt atgctacgtc tgatgccatg gtatctctcc cagccattta atgcttcatt
     9481 ctggagtttc tcgttcggcg tatctgcact ggcaaccacc ggtttgcatc tggggagtgg
     9541 cagcgaaaat ggatttttcc atacgctggc ggtaccgctg tttatcttta ccaattttat
     9601 tattgcaata ctgctcatcc gtacttttgc gcttctgatg cagggaaaat tgttagtcag
     9661 aaccgagcgc gctgttttaa tgaaagcaga ggacaaagaa tgatcattcg tgacgaaaac
     9721 tattttactg ataaatatga attaacccgc acacactctg aagtactgga agcggtgaaa
     9781 gtggttaaac cgggtaaaac gctggatctg ggctgtggca atggtcgtaa cagtctttac
     9841 ctggcagcca atggttatga tgttgacgca tgggataaaa atgccatgag tatcgccaat
     9901 gtagagcgca ttaaatccat tgaaaatctg gataatttac acacccgagt cgttgatctg
     9961 aataacctca catttgatag acagtacgat tttattcttt cgactgtggt actgatgttc
    10021 cttgaggcta aaaccatccc agggctgatt gccaatatgc aacgttgcac taaacttggt
    10081 ggttacaacc tgattgtggc ggcgatggat accgctgatt atccatgtac cgtcggcttc
    10141 ccgtttgcct tcaaagaggg agaattacgt cgatattacg aaggctggga gagggtgaaa
    10201 tacaatgaag acgtcggcga gctgcaccgc accgacgcca acggtaatcg tattaaactg
    10261 cgtttcgcca cgatgctggc acgtaaaaaa tgacccgcta agaataaggc gcgtgaaaat
    10321 tccccacgct gagatgattt actgttcttc ttttcggtaa gcatattttt tatcgaaggg
    10381 atgtgaaatt aatcacagta gtcgaagttt tttagcagct taacttactg aaatttaact
    10441 actgatgatt gacttagccc ctttttcggc attgactatg tcgtctgaaa aggggctgaa
    10501 aaatttattt tcaccaacac tttttttgcc acaacacgaa gcggcgcttt ttgctataat
    10561 ttaaaaagta atataatcat ctcaggaaac tattcatgcg taccacatca tttgcgaaag
    10621 ttgcagcttt atgcggcttg ttggctctgt ctggttgtgc ctctaaaatc acccagccag
    10681 ataaatattc tggtttt
//
LOCUS       DAJVUY010000143        10660 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.143, whole genome shotgun sequence.
ACCESSION   DAJVUY010000143 DAJVUY010000000
VERSION     DAJVUY010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10660
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.143"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ72_003302"
     CDS             311..1609
                     /gene="kgtP"
                     /locus_tag="OQQ72_003302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HCS2012922.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM
                     HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS
                     SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV
                     ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL"
     gene            complement(1606..1929)
                     /locus_tag="OQQ72_003303"
     CDS             complement(1606..1929)
                     /locus_tag="OQQ72_003303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417081.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HCS2012923.1"
                     /translation="MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNE
                     YSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVW
                     QLTRH"
     gene            complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ72_003304"
     CDS             complement(1975..3330)
                     /gene="pssA"
                     /locus_tag="OQQ72_003304"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HCS2012924.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYKAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ72_003305"
     CDS             complement(3444..6104)
                     /gene="pat"
                     /locus_tag="OQQ72_003305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HCS2012925.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ72_003306"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
     CDS             complement(6136..6834)
                     /gene="tapT"
                     /locus_tag="OQQ72_003306"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HCS2012926.1"
                     /translation="MTENTVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREALAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ72_003307"
     CDS             complement(6903..7322)
                     /gene="trxC"
                     /locus_tag="OQQ72_003307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HCS2012927.1"
                     /translation="MNTVCTHCQSINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            7529..8566
                     /locus_tag="OQQ72_003308"
     CDS             7529..8566
                     /locus_tag="OQQ72_003308"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS2012928.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ72_003309"
     CDS             complement(8614..9303)
                     /gene="ung"
                     /locus_tag="OQQ72_003309"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCS2012929.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ72_003310"
     CDS             9608..9991
                     /gene="grcA"
                     /locus_tag="OQQ72_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007728348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HCS2012930.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ72_003311"
     CDS             complement(10047..10634)
                     /gene="eamB"
                     /locus_tag="OQQ72_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HCS2012931.1"
                     /translation="MTPTLLSAFWTYTLITAMTPRPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2653 a         2704 c         2739 g         2564 t
ORIGIN      
        1 aaaggccatc cgtcaggatg gcctttttgc attggcgcag aaaaaatgac tgatgcgacg
       61 ctgcgcgtct tatactccca catatgccag attcagcaac ggatgcggtt tccccaactt
      121 gcctacttcc atacgtgtcc tccttaccag aatttatcct taagctcctc aataaccatt
      181 ttcctgctaa ctaaattcat ggttaatgtt gcataataat acgtaacaaa tgtataacat
      241 tttctttacc aaaagaaata aacaaaagtg accaacaaaa gcatcggatt acggcaggag
      301 acataatggc atggctgaaa gtactgtaac ggcagacagc aaactgacaa gtagtgatac
      361 tcgtcgccgc atttgggcga ttgtgggggc ctcttcaggt aatctggtcg agtggttcga
      421 tttctatgtc tactcgttct gttcactcta cttcgcccac attttcttcc cttccgggaa
      481 cacgacgact caactactac aaacagcagg tgtttttgct gcgggattcc tgatgcgccc
      541 aataggcggt tggctatttg gccgcatagc cgataaacat ggtcgcaaaa aatcgatgct
      601 gttatcggtg tgtatgatgt gtttcggatc gctggttatc gcctgcctcc caggttatga
      661 aactataggt acgtgggctc cggcattatt gcttctcgcg cgtttatttc agggattatc
      721 cgttggcgga gaatatggca ccagcgccac ctatatgagt gaagttgccg ttgaagggcg
      781 caaaggtttt tacgcatcat ttcagtatgt gacgttgatc ggcggacaac tgctagccct
      841 actggttgtc gtggttttac aacacaccat ggaagacgct gcactcagag agtggggatg
      901 gcgtattcct ttcgcgttag gagctgtgtt agctgttgtg gcgttgtggt tacgtcgtca
      961 attagatgaa acttcgcaac aagaaacgcg cgctttaaaa gaagctggat ctctgaaagg
     1021 attatggcgc aatcgccgtg cattcatcat ggttctcggt tttaccgctg cgggctccct
     1081 ttgtttctat accttcacca cttatatgca gaagtatctg gtaaatactg cgggaatgca
     1141 tgccaacgtg gcgagtggca ttatgactgc cgcattgttt gtattcatgc ttattcaacc
     1201 actcattggc gcgctgtcgg ataagattgg tcgccgtacc tcaatgttat gtttcggttc
     1261 gctggcagcc atttttaccg ttcctattct ctcagcattg caaaacgttt cctcgcctta
     1321 tgccgctttt ggtctggtga tgtgtgccct gctgatagtg agtttttata catcaatcag
     1381 tggaatactg aaggctgaga tgttcccggc acaggttcgc gcattaggcg ttggtctgtc
     1441 atatgcggtc gctaatgcta tatttggtgg ttcggcggag tacgtagcgt tgtcgctgaa
     1501 atcaatagga atggaaacag ccttcttctg gtatgtgacc ttgatggccg tggtggcgtt
     1561 tctggtttct ttgatgctac atcgcaaagg gaaggggatg cgtctttagt gacgggtcag
     1621 ttgccagacg gtatagccgg tgcttgcacc ggcgacatcc caggccaaat ccttccagct
     1681 ccagccgctc ccttcggggc ggctatccca aagctctttt gacgccccca aactgacaga
     1741 gaacatcaat ccaaacatgg cactgcgatc ccggctcatc ccctgatgct gtgaatattc
     1801 atttccggcg gcggaaagca tcgccgaggc gataaagtgt tgagctttat cctgcccgct
     1861 ccagctatcg ttagccatat ggctgcatcc agaaagtaac aatagcgaac agacaaaaag
     1921 aatacgcaaa acgtggcctc caaaaaacaa accccgtaca ggacggggtt gtgattacag
     1981 gatgcggcta attaatcggt cgatgcggat acggcgcaaa cggcggatga gtttacgaac
     2041 cttcaccgga taatcggcaa tactttgcag atcgcgatag tgcttaacga tggtggtatg
     2101 ctcgcggatc agctccagtt ctttctctcg ctgcggcgca agctccagtt gtggatcgtg
     2161 gatcaaaatg gcgttttcca gatccagacg ccaggcgcgc gggttcaggt tattaccggt
     2221 gatcaacatc cacttatcat caacccacat ccctttcagg tgataggtgt tgtcgtcatc
     2281 tttccataac cgaaccacta gctggtcagt attgacgtaa tactgcaaac ggctcaggaa
     2341 aagacgcaga ttgatctcat agagataagg caatgcgcca attatcttga aaggttcatc
     2401 ttccggaatg tagaagtcgt tcgcggtttt atcaccaaca ataatttcga cctttttccc
     2461 ttcgcgcagc aactggataa tattgcgcac aaggattgct ggcaggttga agtatggcgt
     2521 acagatggtt agtttctgct cggcacaagg cataagatgg aaaatggtct tgttcaacag
     2581 actcgatttc cccagcccca ctagcggcgt tacggaaagc tgatcgttgt cggcatcgcc
     2641 ctggaaatga taagcggcat cacgcagctc ctggcggaac agacgaatat cgttcttgat
     2701 ttccgggctt tttggccgat taacatcatc cagacgatta acgccgcggc cattcataat
     2761 attctgtgta acccattcaa acataatgtc tgacatctta cggttacgga taagatgata
     2821 acggtcgtag cgatatttat cgtgctgatg caggtaaaca tcgttcaggc tggcaccgct
     2881 ataaagtacg ctatcgtcga tgataaagcc tttaaagtgc agaacaccaa gggcttcacg
     2941 ggtattgatt ggaacgccat aaaccggaac atctacgccc gaattttcct gcgccatgcg
     3001 gcagtaccag tcagcgttag tgttagatgc cgcagcgcca atgcgtccac gttgtgcacg
     3061 atgccagtcg accagcaccc gcacatccag ttccggacgc tgccttttag ctttatacaa
     3121 cgcgttcaga atgcctttgc caccgtcatc ctgttcgaga tacagggcga caatgcaaat
     3181 gcgctgcttc gcgctggcta ttttttccag cagcgtctcc cggaagtcgg cgggagcgta
     3241 aaagaaatcg acatcatcaa ctgattgaga aatcttgggt agttgggcaa ggtgttgttg
     3301 atgtttatta cgcttaaatt ttgacaacat cacagtgcat ttcttctctg ttcattgaag
     3361 gatcctctgt gcaatgcaga cgacataagc gggcaataat aacaccagtc ccgattaagt
     3421 agtcaacatt tccagtacct tactcatgat tcctcgcgtt gggcaagatt tagcgtaagc
     3481 ccaacgatcc cctcttcgag ctggatatca acgttaaacc cgagcttgcg ggctagcgcc
     3541 accatgccac gattgtttgg catcgtaata ccattcagac gttgtagtcc gtgatctcgc
     3601 gtataggtaa tcaacttttc cattaagcgt cgacctaagc ctaacccttt gagatccgag
     3661 cgaaccagca cagcaaattc ggcatcgatg ttatcaggat cggaaatcgc acgcgtgacg
     3721 ccgaggatct cttccgtttg atcaatacgt cgtaccgcta caaacgccat ttcccgatcg
     3781 tagtcgatct gtgtcatgtt ggctaaatct tcatgggtaa attcgttgat ctcgctaaag
     3841 tagcggtaat aaagatcttc tttggtgact cgcgaaatga attgctgaag ttgtggctca
     3901 tcttctggca aaatcgggcg gaacaagcag cgttcaccgt ttttcaattc tacccattct
     3961 tccagctgat gcggataagg gcgcactgcc agccgactct cgttatcgcc ttcaaacggc
     4021 gagatatcca gcgtgacatc cagcgcggta aattcactgc cagaagccag caaaggatga
     4081 atatccagac gctgaatttc cgggcaatcg acaatcaagt tggaaacctg caccagaagc
     4141 tggctcaagc ctgcaacatc caatgggcgt agcgcactgc gcgcacgaat ctttttactt
     4201 ttgatcccct gaataaccag atagcgggcc aggttcatgt tcagcggcgg cagtgcgacg
     4261 acggcttgat cttcaggacg ccactccaca ccgccttcac ccagcatgat caacggcccg
     4321 aaaaccggat cgtgcccaac cacaacccgc aactcctgag cgccagcacg gttagccata
     4381 ctttgcacca acaggccgtg gatccgcgcc tgcggccagg ccatttttac gcgatcgaaa
     4441 atggcgtttg ccgcttgctg gacttcattg gctgtacgca agtacagcat gacgccctga
     4501 acttccgatt tatgtggaat atccggcgaa cgcaatttca gcgccaccgg ataaccaatc
     4561 tgttcggcaa tatgcaccgc ttcggtgcta tcgctggcaa tccaggtagg gagcgtgttc
     4621 atgccatacg cttgcaggat gggctgaact tcatgggtat cgagcgacgt agccccttcg
     4681 gcaatcgcct gttgcaacag aagatgcgct tctgcggtat tggaagtcag attgctgggc
     4741 aacgccggcg tttcgcgtag ttgcttctga ttacgccggt actccaccat atgcataaaa
     4801 gcagtgatgg ttccttccgg ggtacggtag gtcggcagcc cggcttcgct gaataaacgt
     4861 cgtgcctctt gcgaggagtg ctcgccgcac cagttcgtca gcaaagagac atatttgctg
     4921 cggggatgat gctttaccgc ttcaattaat acttgcgcgc tttctgttgc gggagcagcg
     4981 gcgctgggcg aatgaataac catcagcgcg tcaaaatcct ggctgtggag cagaatatcc
     5041 agcgttttaa tatagtgctc actgctggcg tcatcgcgta gatcgagcgg gttagatatt
     5101 gccacatgtt ctggcagtgc atcgcgcagt ttctggcagg tttcttcgct tagcgttgcc
     5161 agcttgccat tgcgtgacca taaggcatcc agcgccagcg cggcaggcgc agcaccgttg
     5221 ctgataatca tcagccggtc gccacgtagc gggcgcatat ggctaagggt ttccaccgcc
     5281 gaaaacagct cgtgggtgtc ctgtacccgc aacaaaccgg cacgctgaat agccgcatcc
     5341 catgccgggt ccattcctgc cgtggtgttg agcagtcgct gtgccgccgg gctacgtccg
     5401 cttttaatca ccagaatcgg tttattacgc gaggcactac gggccgccga aacaaagcgt
     5461 cgcgcgtcgc ttaactgttc gagatagagc aggatggcgc tggttttact gtcgcgtgcc
     5521 agatagtcaa gcaattcatc aacgtcgata tccaggctgt cgccgagcgc aataaagtag
     5581 gaaaagccca tcttacgctg ttgcgcccag tcgaggatgg tgttggagac ggcagccgat
     5641 tgcgaaataa acgccagctt gccgcgttta atcggcacag gcgaaaagct ggcattcaga
     5701 ccttgccagg gagccagtaa acccagactg tttggtccaa gcaggcgcat gttatggcgc
     5761 agggcgcagg cgcggagatc ttcgtgttgc gatgccgggg cggaaagaat aatgcaggtt
     5821 ttacagcctt tctcgccgag ctcttccaga agagcaagat tacggctggc attggtacat
     5881 aaaaccgcaa ggtcgggtgt aaagggcaag ctggcaatat ccggccaggc caacacaccc
     5941 aacaccgctt tccaggctgg cgtcaccggg agtaccggtc cgttaaagcc tcccgccagc
     6001 aggttacgca tcatcaggta acctgcgcga ttgggtttca tcgacgcgcc aattaccgct
     6061 atcgattttg gtcgcagtag tgcttccagt cctcgctgac tcataccggt ctcccgcaga
     6121 agtgaccgaa tgattttaaa cgctttctaa ctgttctgct gtgatgctac ccagatgttg
     6181 cgttttccct gccagatagc gtgttttaaa gcgggtaaaa tgctcgccta accctgctgc
     6241 cgccccggta tcgccggcca tatctaacag tgcgatggct acctcggcag tacaatattg
     6301 gccttcagcc agggcttcac gcaggcgata ggcagaaagc cgggaaagat cgacggaaat
     6361 gacgggaaga ttatccagat acggactttt acgaaacatc ttgcgagctt ccggccaggt
     6421 accatcgagc atgataaaca gcggtggctt accggcaggt ggtgtgaaga tcacttcccg
     6481 ttgctcatca gcatacgagg cgggaaagac caccattggc tgataatccg ggttttgtac
     6541 cagatccagc aaatcctgcg agggttcggt acgcgaccat tgaaacgcaa cggtatcagg
     6601 caaaatatca gcaatcagac gcccggtatt actgggcttc attggctcgg tgtcgaacat
     6661 cagcaaacag aagcgacttt ttgcttgtgc tggggtaatt gtcgaacaga gacataattt
     6721 ctctggcaaa agacagcgtt ggcagcgacg aacgcgatta ccgcgggcaa gaaaaggacg
     6781 tgttgcgcgc gcaatacgct cggcgcgtaa ctggagaaca gtgttttcgg tcataagaga
     6841 gcgtcgaaaa aacgccattg tcgcagagga gaaaacgggg cacaagatgc gccccggtaa
     6901 gattaaagag attcgttcag ccagctatcg aacggagctt tcggtactgc gccattaagc
     6961 atgtcgacaa cctgaccgtt tttgaaaatc atgatcgtcg gtatactacg aattccaaag
     7021 cgactgctca attcacgttc agcttcggta ttcactttca caaagcgcac tttaccgcta
     7081 cgctcttgcg cgacatcttc aaaaattggt gcgaaattac ggcaggggcc gcaccacggt
     7141 gcccagaagt cgatcaccac aggtagatca tccttcagca atttgtcgag tgtttcaccg
     7201 gtcgcattaa tcacctctcc gtcaaacaag tcgtgaccgc agcgtccgca ttttgccgca
     7261 tcttcgatcc gatcgtcggg aatgcgattg atggactgac aatgggtaca aacggtattc
     7321 ataactaacc tcgggatgag taaggagact tatcggcaac gacgccggta tgtttctaat
     7381 atgttacata ttatcgggga cattgttcca gacaacaatc tgttttattc aataggtatg
     7441 atagtcgcag gctttggtac gaaatcatgg agaaccgcgc ggacttcggg taatctgcgc
     7501 gcttcgcgca gcgctggtgg agaaaagcat gaacgatgaa atgaaaggta aaagcggcaa
     7561 ggtcaaagtg atgtatgtcc gcagtgatga tgattctgat aaacgtaccc acaacccgcg
     7621 taccgggaaa gggggcgggc gtccaggaaa atctcgtgct gacggtggcc gtcgccccgc
     7681 ccgcgatgac aaacagagtc agccccgtga ccgcaagtgg gaagattcgc cgtggcgcac
     7741 ggtttcccgc gcgccgggtg atgagacgcc ggaaaaggcc gatcacggtg gcatcagtgg
     7801 taaaagtttt attgatccgg aagtgttgcg tcgtcagcgt gcggaagaaa cccgcgtcta
     7861 cggcgaaaac gcctgtcagg cactgttcca gagccgtccg gaagcaattg ttcgcgcctg
     7921 gtttatccag agcgtaacgc cacgttttaa agaagccttg cgctggatgg cggcaaaccg
     7981 caaagcgtac catgtggtgg atgaagctga attgacaaaa gcgtcaggca cggaacatca
     8041 cggcggcgtt tgcttcctga tcaaaaagcg taacggtaca accgtgcagc agtgggtaag
     8101 ccaggcaggc gcgcaggatt gcgttctggc actggaaaac gaatctaacc cgcataacct
     8161 gggtggcatg atgcgcagct gcgcgcactt cggcgtgaaa ggtgtcgtgg tgcaggatgc
     8221 ggcactgctg gagtcggggg cggctatccg taccgcagaa ggcggcgcag agctcgttca
     8281 gtcgattact ggcgacaaca ttgttaacgt gctggatgat ttccgtcagg caggttacac
     8341 cgtagtgacc acttccagcg agcagggtaa accgctgttc aaaactagtc tgccagcgaa
     8401 aatggtactg gtgctgggtc aggaatatga agggttaccg gatgccgcac gcgatccgaa
     8461 cgatctgcgc gtgaagattg acggtacggg caacgttgcc gggctgaata tctctgtcgc
     8521 aaccggcgtt ttgcttggtg aatggtggcg tcagaataaa gcctgataaa tcagccgggt
     8581 ggcaactctg ccatccggca tttccccgca aatttactca ctctctgccg gtaatactgg
     8641 catccagtca atcggcgtct cgccacgttg ttccagccac tgatttgcca gcacaaaatg
     8701 gttgcagcca aagaatccac gatgcgccga aagcggcgac ggatgcggtg ctttcagtac
     8761 atgatggcgt tgcttatcta taatcgcccc tttcttttgc gcatgtgatc cccacaacaa
     8821 aaacaccacg ccttcgcggt gctggttaat caggctgatg actttatcag taaacgtctc
     8881 ccaaccgagg ctggcgtggg aatgcgcctg acctgcgcga accgtcaaca cagtattgag
     8941 cagcagaacg ccctgacgcg cccagctttc gagatagcca tgattagggc gggtgaagcc
     9001 cggaatagta ttttccagct ctttatacat attcaataat gacggaggaa tggcaatgcc
     9061 gggacgaacg gaaaatgcca gaccatgcgc ctgtcccggt ccgtgataag gatcctggcc
     9121 gagaatcacc actttaacgt cacccaactc ggtaaagcgg aacgcgttaa agacatcttt
     9181 ttgtggtgga tagatagtga cgccggactg ccgctcgctg gcgacggtct gaagggtatt
     9241 aagaaaataa ggttgttgct tctcttcagc cagcacgtca tgccaggtta attcgttagc
     9301 catctcgctc tcctgcgaat cttcaatccg cctagcttaa ctgcttcttt ctacagaaca
     9361 aaatcatgct cattttttag acttaaacga gtgcaaaaaa atgtaaattg gtaaaatttc
     9421 acacccgcat aagttgatgt aaaacaataa aatccattta cgaccacaat cgatgtgtgg
     9481 tttttattga tttaaatcaa agaatcaagg gtggttgagg agtatatata cactcaagca
     9541 acaatggttt taccaattag ccgcgacagg ctgaacaaat caaataattt tgccggggag
     9601 gcatcacatg attacaggta tccagattac taaagccgct aacgacgatc tgctgaactc
     9661 tttctggctg ctggacagcg aaaaaggcga agcacgttgc atcgttgcaa aagcaggtta
     9721 tgcagaagat gaagtggttg cagtaagcaa actgggtgac attgaatacc gtgaagttcc
     9781 agtagaagtg aaaccagaag ttcgcgttga aggtggtcaa cacctgaacg ttaacgttct
     9841 gcgtcgtgaa actctggaag atgcagttaa gcatccggaa aaatatccgc agctgaccat
     9901 ccgtgtatcc ggttatgcag ttcgctttaa ctctctgact ccggaacagc agcgcgacgt
     9961 tatcgctcgt acctttactg aaagcctgta aggcttaagt agcaagttac taagcggaag
    10021 agggcgacct cttccgcttt ttttcgttaa tagaaaatgc gtaccgcgca atagaccagc
    10081 aacagggcaa gcacgatatt taactggcga ccatactggc gaaacaatcg ctgaaacaga
    10141 tgccccgcca gcgcccagca cacattgcca aacgtcccaa tcatcgccag caaaacgctg
    10201 acgccaacta cccagcttag cgcctgtgtt tgcggcagaa caaacgtcga cagtgccgta
    10261 acaccgtaca aaatgatttt gacgttcaca aactgcaaag caaagctggc ccaaaagctg
    10321 attggttttg cctgaagtcc gtcttccttt gttgggctgg tggcgatttt ccacgccagc
    10381 cagacaatat atgccgcccc cgcccaactc aaaaggtgta ccgctgccgg gtcaatcact
    10441 gccagtgaaa atgaaatgcc cgcacacagt aacatcacaa tcaaaaatcc cagactcatc
    10501 cctgccagca cgcgggtact ttgacgaaat ccatgcgacg tagcagagct aagggcgaga
    10561 atattgttcg gtcttggcgt catagcggta atcagggtgt aagtccaaaa agcacttaaa
    10621 agggtcggtg tcacttgtta tctcctctgt tttggtagac
//
LOCUS       DAJVUY010000144        10464 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.144, whole genome shotgun sequence.
ACCESSION   DAJVUY010000144 DAJVUY010000000
VERSION     DAJVUY010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10464
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.144"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ72_003312"
                     /pseudo
     CDS             complement(28..1926)
                     /gene="espL1"
                     /locus_tag="OQQ72_003312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector EspL1"
     gene            2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ72_003313"
     CDS             2448..4376
                     /gene="thrS"
                     /locus_tag="OQQ72_003313"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCS2012932.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4380..4922
                     /gene="infC"
                     /locus_tag="OQQ72_003314"
     CDS             4380..4922
                     /gene="infC"
                     /locus_tag="OQQ72_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCS2012933.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQRVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ72_003315"
     CDS             5019..5216
                     /gene="rpmI"
                     /locus_tag="OQQ72_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCS2012934.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ72_003316"
     CDS             5269..5625
                     /gene="rplT"
                     /locus_tag="OQQ72_003316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCS2012935.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     misc_feature    5742..5866
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ72_003317"
     CDS             5748..5792
                     /gene="pheM"
                     /locus_tag="OQQ72_003317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheST operon leader peptide PheM"
                     /protein_id="HCS2012936.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ72_003318"
     CDS             6075..7058
                     /gene="pheS"
                     /locus_tag="OQQ72_003318"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCS2012937.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK"
     gene            7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ72_003319"
     CDS             7073..9460
                     /gene="pheT"
                     /locus_tag="OQQ72_003319"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HCS2012938.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ72_003320"
     CDS             9465..9764
                     /gene="ihfA"
                     /locus_tag="OQQ72_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HCS2012939.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10068..10208)
                     /locus_tag="OQQ72_003321"
     CDS             complement(10068..10208)
                     /locus_tag="OQQ72_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HCS2012940.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2751 a         2368 c         2667 g         2678 t
ORIGIN      
        1 taagttggca gcattaccaa tagttggtta taaatacgtc tttagttcat cagcactaaa
       61 actcaggctt tggctgatta catttatagc agcataatat gtttctacag ttttataatg
      121 attatgatga atggctatat gaacagctga catgttgtca tgatttttag cggccaacag
      181 tgtgaataac tgacgttgac taaaagaata tttttttgca aaaatattca gcgtcgatat
      241 ataagataac acgacgtctt cattaccctt gctcatggcg atgtataata caggggttcc
      301 atgtgctgta gcgcctttta ataaatccat gatgttagct ttgctcaact tgtatttaaa
      361 ggcgatgcca ttaattttag agaggaaccg tgtgacacac aaagggtgat tattttccat
      421 tgcagcaaac aaccctagtt caccatcacg tgttttcatt gctaaaatat ccatcactat
      481 ttttttgttt aaaagctctt gtgctattgg agtggttaat gcattcagaa agatatcgat
      541 tgtttcatcg aacccataca acatggagat atagagccca ggtgtttcgt tagcactttt
      601 agtttgcagt aatttaacca gattatcttc atgaatgata tgattgtata tcagtgactg
      661 aatttcttgc ataaatattt ttacgttgtc agtatgtccg ttcatcatag ccagaaataa
      721 agcaggtgta ccaacgctat tctgcgcagt tattatttca atgatttctt tttcagggag
      781 tatgggcaac tgtttgaata atgtaataag ctgttgagtc tggcctgtgg ccattattaa
      841 caacattgcc gatggatgta taggggcaaa tggcattcgt gatgcaatac ccgcgaaaat
      901 agcccctgga actcccacag gtaatagggg cagaatagca attgcacagt tgcgaacata
      961 cctatcagcc caggtctgag catcgggacc tgaactgatg aacttatcaa gcgaaagaaa
     1021 gccccgtgct gtcctgtggg tgcctctgac ggcaacgttg gtatcgttcg ggtcgtagac
     1081 ggacactaca tagtttaatt gtccatacac taactgcttt attcgtagcc ttactgacaa
     1141 agtatgattg tctatatata aaatcgcgga catatgactg acattgtttg ccatcattcg
     1201 acaaaagaaa atatctaaag cgaagccaaa atccttactc gcgataacgc gactccctgc
     1261 aggaggatgg cgaagtaatg ctctgaactc cgcatcccgg actaagggga catgctgctg
     1321 tatggattca acggaggagt aatgtttaat caggttgact ttgccttttc catttctcaa
     1381 tgaatcaagg gcgtattgca atgacagatg gcgacaaaaa atagcgtcag aaggagattg
     1441 caaaaaacat gcactaccat tgagatttac tgttggttgt atagtttttt ctctatggat
     1501 ttttttagac agtttcatac aatggttacg atcttcggca gttaactgtt cctgctcaat
     1561 ataatccagt atgcttcaca aatggttagc cttaataggc gtggtttcca gaaataaggg
     1621 aatgatttct tttttatagt gtaatgtaat aagtatattt tctgcatgga tgggtgaagt
     1681 ggcaaagtta atgataaaaa gggcagtgga gtaacaattt tgtgatattt ttcgacagtt
     1741 tgcggtaaat tcctgagtaa tacagtatga cagcatcgaa cttaagtcag aggtatcaag
     1801 tagggtgatg agttggcgcg caaattgatt aataagctct gatgaaggcg ttggtatgtc
     1861 gctatcgatg tgcaatctat gaggagactt ataatgagtt ctgataatga tatcgttttg
     1921 actcataatc tattcacctt atatatactg gaggttttga ggatgatgat taattattat
     1981 cgccagaacg aaatgtgcac gaaaaattgc tataagaatt gtgtcacttt tatcattgtg
     2041 atatgaccac ttcgtcatta atctcatgat cgtttaaata ctaccgccaa atcacgcaac
     2101 gaactttgct ggattcagtt tatgctgctg taaatccgct cgcagtaaac ctttcagacg
     2161 caccgtgatg ttatcagtgg ttctttaagc gttttgctgg tgtactcact acaaacgaat
     2221 tgcgaatcga atcaatgtga aacggaaagg tacaatctcc ctttttttag tgttaacatc
     2281 gttcaaccgg gtggaaggtg agaggttaat gtctttcatt tgtgtacctg attgcgaacc
     2341 aatttagcat ttgttggcta gatggtttcg caatgaactg ttaataaaca aatttttctt
     2401 tgtatgtgat ctttcgtgtg ggtcaccact gcaaataagg atataaaatg cctgttataa
     2461 ctcttcctga tggcagccaa cgccattacg accacgctgt aagccccatg gatgttgcgc
     2521 tggacattgg tccaggtctg gcgaaagcct gtatcgcagg gcgcgttaat ggcgaactgg
     2581 ttgatgcttg cgatctgatt gaaaacgacg cacaactgtc gatcattacc gccaaagacg
     2641 aagaaggtct ggagatcatt cgtcactcct gtgcgcacct gttagggcat gcgattaaac
     2701 aactttggcc gcataccaaa atggcaatcg gcccggttat tgacaacggt ttttattacg
     2761 acgttgatct tgaccgcacg ttaacccagg aagatgtcga agcactcgag aagcggatgc
     2821 atgagcttgc tgagaaaaac tacgacgtca ttaagaagaa agtcagctgg cacgcagcgc
     2881 gtgaaacttt cgccaaccgt ggggagagct acaaagtctc cattcttgac gaaaacatcg
     2941 cccatgatga caagccaggt ctgtacttcc atgaagaata tgtcgatatg tgccgcggtc
     3001 cgcacgtacc gaacatgcgt ttctgccatc atttcaaact aatgaaaacg gcaggggctt
     3061 actggcgtgg cgacagcaac aacaaaatgt tgcaacgtat ttacggtacg gcgtgggcag
     3121 acaaaaaagc acttaacgct tacctgcagc gcctggaaga agccgcgaaa cgcgaccacc
     3181 gtaaaatcgg taaacagctc gacctgtacc atatgcagga agaagcgccg ggtatggtat
     3241 tctggcacaa cgacggctgg accatcttcc gtgaactgga agtgtttgtt cgttctaaac
     3301 tgaaagagta ccagtatcag gaagttaaag gtccgttcat gatggaccgt gtcctgtggg
     3361 aaaaaaccgg tcactgggac aactacaaag atgcaatgtt caccacatct tctgagaacc
     3421 gtgaatactg cattaagccg atgaactgcc cgggtcacgt acaaattttc aaccaggggc
     3481 tgaagtctta tcgcgatctg ccgctgcgta tggccgagtt tggtagctgc caccgtaacg
     3541 agccgtcagg ttcgctgcat ggcctgatgc gcgtgcgtgg atttacccaa gatgacgcgc
     3601 atatcttctg tactgaagaa caaattcgcg atgaagttaa cggatgtatc cgtttagtct
     3661 atgatatgta cagcactttt ggcttcgaga agatcgtcgt caaactctcc actcgtcctg
     3721 aaaaacgtat tggcagcgac gaaatgtggg atcgtgctga ggcggacctg gcggttgcgc
     3781 tggaagaaaa caacatcccg tttgaatatc aactgggtga aggcgctttc tacggtccga
     3841 aaattgaatt taccctgtat gactgcctcg atcgtgcatg gcagtgcggt acagtacagc
     3901 tggacttctc cttgccgtct cgtctgagcg cctcctatgt gggcgaagac aacgagcgta
     3961 aggtaccggt aatgattcac cgcgcaattc tggggtcgat ggaacgtttc atcggtatcc
     4021 tgaccgaaga attcgctggt ttcttcccga cctggcttgc gccagttcag gttgttatca
     4081 tgaatattac cgattcacag tctgaatacg ttaacgaatt gacgcaaaaa ctatcaaatg
     4141 cgggcattcg tgttaaagca gacttgagaa atgagaagat tggctttaaa atccgcgagc
     4201 acactttgcg tcgcgtccca tatatgctgg tctgtggtga taaagaggtg gaatcaggca
     4261 aagttgccgt tcgcacccgc cgtggtaaag acctgggaag catggacgta aatgaagtga
     4321 tcgagaagtt gcaacaagag attcgcagcc gcagtcttaa acaattggag gaataaggta
     4381 ttaaaggcgg aaaacgagtt caaacggcgc gccctaaccg tatcaatggc gaaattcgcg
     4441 cccaggaagt tcgcttaaca ggtctggaag gcgagcagct tggtattgtg agtctgagag
     4501 aagctctgga gaaagcagaa gaagccggag tagacttagt cgagatcagc cctaacgccg
     4561 agccgccggt ttgtcgtata atggattacg gcaaattcct ctatgaaaag agcaagtctt
     4621 ctaaggaaca gaagaaaaag caaagagtta tccaggttaa ggaaattaaa ttccgtcctg
     4681 gtacagatga aggcgactat caggtaaaac tccgcagcct gattcgcttt ctcgaagagg
     4741 gtgataaagc caaaatcacg ctgcgtttcc gcggtcgtga gatggcgcac cagcaaatcg
     4801 gtatggaagt gcttaatcgc gtgaaagacg atttgcaaga actggcagtg gtcgaatcct
     4861 tcccaacgaa gatcgaaggc cgccagatga tcatggtgct cgctcctaag aagaaacagt
     4921 aaggccttca agtagcactg tctgtggagc cttcgggctt cacaggcttt gttcgccttt
     4981 gtttcgttta ttaacaatgc gaagtggaag ttattaaaat gccaaaaatt aagaccgtac
     5041 gcggtgctgc taagcgcttc aaaaaaaccg gtaaaggtgg ttttaagcac aagcacgcta
     5101 acctgcgtca cattctgacc aaaaaagcga ccaaacgtaa acgtcacctg cgtccgaaag
     5161 ccatggtttc caaaggcgat ctgggcctgg taatcgcgtg cctgccgtac gcataagccg
     5221 ttaacgtttt taacttttta attagaatat agatacagga gagcacatat ggctcgcgta
     5281 aaacgtggtg ttattgcacg cgcacgtcac aagaaaattt tgaaacaagc taaaggctac
     5341 tacggtgcgc gttctcgcgt ataccgcgtt gccttccagg ctgttatcaa agctggtcag
     5401 tatgcttacc gtgaccgtcg tcaacgtaag cgtcagttcc gtcaactgtg gattgcacgt
     5461 atcaacgcag cagcacgtca gaacggtatt tcttacagca aattcatcaa tggcctgaaa
     5521 aaagcctctg ttgaaatcga ccgtaagatc ctggctgata tcgcagtatt cgacaaagta
     5581 gcgttcaccg ctctggttga aaaagcgaaa gcagctctgg cataagccag ttgaaagagg
     5641 gagctagtct ccctcttttc gtttcaacgc catcaaaaca ttgactttta tcgccgtagc
     5701 cttttcaata aaggtctttt gaagagtacc aaaaggtaac gcaagcaatg aatgctgcta
     5761 ttttccgctt ctttttttac tttagcacct gaatccagga ggctagcgcg tgagaagaga
     5821 aacggaaaac agcgcctgaa agcctcccag tggaggcttt ttttgtatgc gcgttttgaa
     5881 aaataaaaag ccagtctatc aggcgtaatt gtcgcagcca gtctggatac ggccagcgcg
     5941 gagaaaccgg agcgtattta agtacgtgag aatttcgagc actgcccggg accaaaatgg
     6001 caagtaaaat agcctgatgg gataggctct aagtccaacg aaccagtgtc accactgaca
     6061 caatgaggaa aaccatgtca catctcgcag aactggttgc cagtgcgaag gcggccatta
     6121 gccaggcgtc agatgttgcc gcgttagata atgtgcgcgt cgaatatttg ggtaaaaaag
     6181 ggcacttaac ccttcagatg acgaccctgc gtgagctgcc gccagaagag cgtccggcag
     6241 ctggtgcggt tatcaacgaa gcgaaagagc aggttcagca ggcgctgaat gcgcgtaaag
     6301 cggaactgga aagcgcagcg ctgaatgcgc gtctggcggc ggaaacgatt gatgtctccc
     6361 tgccaggtcg tcgcattgaa aacggcggtc tgcatccggt tacccgtacc atcgaccgta
     6421 tcgaaagttt cttcggtgag cttggcttta ccgtggcaac cgggccggaa atcgaagacg
     6481 attatcataa cttcgatgct ctgaacattc ctggtcacca cccggcgcgc gctgaccacg
     6541 acactttctg gtttgacact acccgcctgc tgcgtaccca gacctctggc gtacagatcc
     6601 gcaccatgaa agcccagcag ccaccgattc gtatcatcgc gcctggccgc gtttatcgta
     6661 acgactacga ccagactcac acgccgatgt tccatcagat ggaaggtctg attgttgata
     6721 ccaacatcag ctttaccaac ctgaaaggca ctctgcacga tttcctgcgt aacttctttg
     6781 aggaagattt gcagattcgc ttccgtcctt cctacttccc gttcaccgag ccttctgcag
     6841 aagttgacgt catgggtaaa aacggtaaat ggctggaagt gctgggttgc gggatggtgc
     6901 atccgaacgt gctgcgtaac gttggcatcg acccggaagt ttactctggt ttcgccttcg
     6961 ggatggggat ggagcgtctg actatgttgc gttacggcgt caccgacctg cgttcattct
     7021 tcgaaaacga tctgcgtttc ctcaaacagt ttaaataagg caggaataga ttatgaaatt
     7081 cagtgaactg tggttacgcg aatgggtgaa cccggcgatt gatagcgatg cgctggcgaa
     7141 tcaaatcact atggcgggcc tggaagttga cggtgtagaa ccggttgccg gtagcttcca
     7201 cggcgtggtc gttggtgaag tggttgagtg tgcgcagcat ccgaacgctg acaaactgcg
     7261 tgtgacaaaa gtgaatgtcg gcggcgatcg cctgctggac atcgtctgtg gtgcgccaaa
     7321 ctgccgtcag ggcctgcgtg tggcggtagc taccattggt gctgttctgc cgggtgattt
     7381 caaaattaaa gcggcgaaac tgcgtggcga accgtctgaa gggatgctgt gctccttctc
     7441 tgaactggga atttctgacg atcacagcgg cattatcgaa ctgcctgcag atgcgccgat
     7501 tggcactgac atccgcgaat acctgaaact cgatgacaac accatcgaaa tcagcgtaac
     7561 gccaaaccgt gccgactgct taggtatcat tggtgttgcg cgtgacgttg ccgtgctgaa
     7621 tcagctgccg ctggttgaac cggaaatcgt tccggttggt gcgaccatcg acgacacgtt
     7681 gccgattaca gtcgaagcgc ctgaagcctg cccgcgctat cttggccgtg tggtaaaagg
     7741 cattaacgtt aaagcgccaa ctccgctgtg gatgaaagaa aaactgcgtc gttgcgggat
     7801 ccgttctatc gatgcagttg ttgacgtcac caactatgta ctgctcgaac tgggccagcc
     7861 gatgcacgct ttcgataaag atcgcattga aggcggcatt gtggtgcgga tggcaaaaga
     7921 gggcgaaacg ctggtgctgc ttgatggcac tgaagcgaag ctgaatgctg acactctggt
     7981 catcgccgac cacaacaagg cgctggcgat gggcggcatc tttggtggcg aacactctgg
     8041 cgtgaatgac gaaacgcaaa acgtcttgct ggaatgcgct ttcttcagcc cgctgtctat
     8101 caccggtcgt gctcgtcgtc atggcctgca tactgatgcg tctcaccgtt atgagcgtgg
     8161 cgttgatccg gcactgcagc acaaagcgat ggaacgtgcg acccgtctgc tgatcgacat
     8221 ctgcggtggt gaggctggtc cggtaattga tatcaccaac gaagcaacgc tgccgaagcg
     8281 tgcaaccatc actttacgtc gtagcaaact ggattgcctg atcggccatc atattgctga
     8341 tgaacaggta actgacattc tgcgtcgtct cggctgcgaa gtgaccgaag gcaaagacga
     8401 gtggcaggca gttgcgccga gctggcgttt cgatatggag attgaagaag atctggtcga
     8461 agaagtcgcg cgtgtttacg gctacaacaa catcccggat gagccggtac aggcaagcct
     8521 gattatgggt actcaccgtg aagctgacct gtcgctcaag cgcgtgaaaa cgctgctcaa
     8581 cgacaaaggc tatcaggaag tgatcaccta cagcttcgtt gatccgaaag tgcagcagat
     8641 gatccatcca ggcgttgaag ccttactgct gccaagcccg atctctgttg aaatgtcagc
     8701 aatgcgtctt tctctgtgga ccggcctgct ggcaaccgtg gtgtacaacc agaaccgtca
     8761 gcagaaccgt gtgcgcattt tcgaaagcgg tctgcgtttc gtaccagata ctcaggcacc
     8821 gttgggcatt cgtcaggatc tgatgttagc cggtgtgatt tgcggtaacc gttacgaaga
     8881 gcactggaac ctggcaaaag agaccgttga tttctatgat ttgaaaggcg atcttgaatc
     8941 cgttctcgac ctgaccggta aactgaatga ggttgagttc cgtgcagaag cgaatccggc
     9001 actgcatccg gggcaatccg cagcgattta tctgaaaggg gaacgtattg gttttgttgg
     9061 agttgttcat cctgaactgg aacgtaaact ggatcttaac ggtcgcactc tggtgttcga
     9121 actggagtgg aacaagctcg cagaccgcgt ggtgcctcag gcgcgcgaga tttctcgctt
     9181 cccggcgaac cgtcgtgaca tcgcggtggt ggtcgcagaa aacgttcccg cagcggatat
     9241 tttatccgaa tgtaagaaag ttggcgtaaa tcaggtagtt ggcgtaaact tatttgacgt
     9301 gtaccgcggt aagggtgttg cggaggggta taagagcctc gccataagcc tgatcctgca
     9361 agataccagc cgtacactcg aagaagagga gattgccgct accgtcgcca aatgtgtaga
     9421 ggcattaaaa gagcgattcc aggcatcatt gagggattga acctatggcg cttacaaaag
     9481 ctgaaatgtc agaatatctg tttgataagc ttgggcttag caagcgggat gccaaagaac
     9541 tggttgaact gtttttcgaa gagatccgtc gcgctctgga aaacggcgaa caggtgaaac
     9601 tctctggttt tggtaacttc gatctgcgtg ataagaatca acgcccggga cgtaacccga
     9661 aaacgggcga ggatattccc attacagcac ggcgcgtggt gaccttcaga cccgggcaga
     9721 agttaaaaag ccgggtcgaa aacgcttcgc ccaaagacga gtaatctgat ctaactaaaa
     9781 aggccgctct gcggcctttt ttctttcaat aactaattga tttataatgt tttatatctc
     9841 ttcgttccac gatgcgtcca catttagtgg ggggagggga gtaagcccgc tacattgtgg
     9901 gctttgtctt atagtctgat cactgtttca agtcggtgag gacaccaaaa agaacccccg
     9961 cagtttttac gctgcgggtt tgttgttcat gtctgtgaga tagggtgcct tatcgacctt
    10021 accctggcaa ccgattgacg ggggattgct cccccgtcgc ggtttcctta ctgcttacac
    10081 tgtaagaacg ccgcaaactc cgctccccag aagctcatcc gtatttcgca cagcgaaccg
    10141 tgcagcatcc agatgatgag gattgccgtc acgcagaacg tgatggccgt aagcgatttt
    10201 tgcgacatag cgcttgctcc tttttcgggg aggcgctaac ctatcacttg cttagggtag
    10261 acggttaggg cctcggttaa acaaaaatgt tttccggggc ctttccacat ctggccttca
    10321 ggtattccct ccgaccatca gccgaaaggc acccgcgcgt aatctatcgc ttttttgtta
    10381 ctccggcaat tctgctcgtt aattctgagg taagggcaaa ctcatctgat tgtttcctct
    10441 gtgtgaagtt ggcagttcat gcca
//
LOCUS       DAJVUY010000145        10442 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.145, whole genome shotgun sequence.
ACCESSION   DAJVUY010000145 DAJVUY010000000
VERSION     DAJVUY010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10442
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.145"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(550..912)
                     /locus_tag="OQQ72_003322"
     CDS             complement(550..912)
                     /locus_tag="OQQ72_003322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HCS2012941.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMAGFSKTAF"
     gene            1197..1406
                     /locus_tag="OQQ72_003323"
     CDS             1197..1406
                     /locus_tag="OQQ72_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012942.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1418..2005)
                     /gene="mtlR"
                     /locus_tag="OQQ72_003324"
     CDS             complement(1418..2005)
                     /gene="mtlR"
                     /locus_tag="OQQ72_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol operon repressor MtlR"
                     /protein_id="HCS2012943.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(2005..3153)
                     /gene="mtlD"
                     /locus_tag="OQQ72_003325"
     CDS             complement(2005..3153)
                     /gene="mtlD"
                     /locus_tag="OQQ72_003325"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS2012944.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3383..5296)
                     /gene="mtlA"
                     /locus_tag="OQQ72_003326"
     CDS             complement(3383..5296)
                     /gene="mtlA"
                     /locus_tag="OQQ72_003326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HCS2012945.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLT
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA
                     TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGRK"
     gene            5833..6195
                     /locus_tag="OQQ72_003327"
     CDS             5833..6195
                     /locus_tag="OQQ72_003327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HCS2012946.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            6198..7334
                     /locus_tag="OQQ72_003328"
     CDS             6198..7334
                     /locus_tag="OQQ72_003328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS2012947.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVQGTIELDPND
                     DIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
     gene            complement(7794..8231)
                     /locus_tag="OQQ72_003329"
     CDS             complement(7794..8231)
                     /locus_tag="OQQ72_003329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000763815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012948.1"
                     /translation="MADKAILWALISASTKEERKACSLSYFACKAAEAELGLAYMAAN
                     DNKEFLTSLSNIMRYKIDAGLSESYTCYLLSKGKIIRPYLKNLNPLQLAADCIETVNK
                     IKDKNKKIIDINSVNICSDDKNIKLRVNSTIMAIDDSIKCIDE"
     gene            complement(8939..9400)
                     /locus_tag="OQQ72_003330"
     CDS             complement(8939..9400)
                     /locus_tag="OQQ72_003330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HCS2012949.1"
                     /translation="MKACLLLFFYFSLIDQLHGADVKIKENESVMGSTAMTYDLSEEK
                     LMKLKYKSQHGDSEASFRLYQYYCFTKNNIDKQLRFLERSASQGNVTAQFNYGVFLSD
                     TNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP"
     gene            complement(9412..>10442)
                     /locus_tag="OQQ72_003331"
     CDS             complement(9412..>10442)
                     /locus_tag="OQQ72_003331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS2012950.1"
                     /translation="KTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRV
                     SEESRRWLASCGLTVAQMQSQMDPVYTPARKIHLYHCDHRGLPLALISTEGATAWCAE
                     YDEWSNLLSDENPHHLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKG
                     GWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIES
                     ATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTSKGQNSFASQLAKELHTNVIGPDT
                     LWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGT
                     PEKPSDIR"
BASE COUNT         2660 a         2504 c         2383 g         2895 t
ORIGIN      
        1 accttaaaat caccatcata cactaaatca gtaagttggc agcattaccg agttgtccat
       61 tgtattattg gtgatttatg ttgctttaca ttaatgacag tgatgtgtgt cgattaaata
      121 ttgttttaag cattcatcat aaaaatgtat cattcgtttc aaaagatgtc tgtgtttgta
      181 tgaatatatt attttcgtgg attctaatga tgattattaa taaatgtcaa atatgaaaga
      241 aaccatgtct gggaaaaaat ttacagataa tttattgtat gaatatgatg attaaaattt
      301 cacaattaaa tccgaaaaaa agagacgtaa ctgcttgtta attaataaat gatatcttct
      361 atatattttt attgtttata ggtggctatt tcggtaaaaa tgcattttca gaatatcaac
      421 cagcggtaaa tcgacgtaaa gggagtgaat tgtttggtaa ttaggcgagt agacaggaga
      481 gtccccgcat tgaccagcta aggcaagcca gatgcgggtt gatatgatcg aaccagtcgt
      541 ctgaggcgct taaaacgcag tcttagagaa tccagccatc tcctgcaggc ccatttcacg
      601 gcccagcgcg gtcattgggt gcacaaccac cagtccgcga acacttttct tcagcttgcc
      661 catatcagcc tgctcttttt tggtaattgc gcgctgaaac ggcatcttca tcagcttctg
      721 tgcttcttta ctcagttttt ggctatgaac ctcacgcagg cgagcaattt ctgcttccag
      781 cgtggctttc tctttttcca gctcggcata tttgtctgcg gcttcaacca gcgacagatc
      841 ggcctgctgg tggcggatgg cgtccaggcg atcgctgaga cgtttgattt cgtttttttc
      901 gacttctttc atgtgatggc ttctgataaa gataaattta tagcccctag tatgcgcgac
      961 caggtgcttt gttcacaact gatgacattg taatagttct gcaacgtaat cattaacatg
     1021 ctcaaaaact acgcaattcg ttgattaatt aagaaatcta tagaaaaaag ataataaaca
     1081 gcagcggatg attattgagg attcagcacg ttttccttaa tgtcatcttt accgggaacc
     1141 taaactaaaa ttggtggccg cgcattcccg gcgcggggta atacggagat atcatcatgg
     1201 gcaaattagg tgaaaacgtt ccgcttctta tcgataaagc cgtagatttc atggcatcaa
     1261 gccaggcgtt ccgggagtat ctgaaaaaac ttcctccccg taacgcgatt ccgtccggaa
     1321 tacccgatga aagcgtgccg ttatatctac aacgtctgga gtattatcgt cggctttatc
     1381 ggccgaagca ggtagagggg cagtaagcag acgttgctta cttttgaaag gcttttttta
     1441 agctgatttt ggaaatcagc tcagtcagtg aaaggaccat tgttgatcgc acagcctgtt
     1501 gatagcgctg aatttgcatt gcatacaaac tggagtctgc tggttcaaac tgtggcggcg
     1561 gtggtaacgc cgccacgcag tgcagttcac caaagggtcc aaggatttcg tcgtcggtaa
     1621 aggcgtactc gttgccgtcg tgatttagct cttcacgcaa tgccatcagc agttccgcat
     1681 cttcgtattc ctggcggtta atgacgccca acccgtaaat gagttttaaa cgcacagaaa
     1741 gatcgcccag cggaccgtcg ccgtcgagta acggttctac agcatacttc accgcgtaat
     1801 cgtctttgcg gaatacctga agcaccagaa gatttaccgc ctcggtcaaa agctcgacgg
     1861 cggtgatcag aaagcttcgc acggttttgc cagcattcag acgctcaagc acacggtttt
     1921 caaaggcctg ggtttgttcc attgttgcct gcatatctga caatctgtta ttcgggcgca
     1981 gggtgtcctg cgcctggtcc accattattg cattgcttta taagcggtta ccgcctcgga
     2041 tacaacctca ctgttggcat caagaccgga aatctgtgcc agcgccgcct gcggaccttt
     2101 gtcagcgatc agtgctgcca gttcctgagc ctgcggatca tcttcactgc ggaagtgcat
     2161 tgcaccagca atcccctgaa tcagattctt gtgcggaagg ctgtattcca gcgtaccgag
     2221 cagtggcttg atcagacggt cgccagcact cagtttacgc agcggctgac ggcctacgcg
     2281 ctctacatca tctttcagat acgggttctc aaaacgaccg aggattttct ggatgtacgc
     2341 cgcatgtttg tctgcgtcaa agccgtagcg cttgatcagt accgcaccac tttcttccat
     2401 cgcacctttt accaccgcgc ggattttctc gtcgagaata gcgtcacgaa tggtctgatg
     2461 accggccagt tttccgaggt acgcggttat agcatgaccc gtgttcaggg tgaagagttt
     2521 acgttcgaca aatgccatca ggttgtcggt taactccatg cttgggatgt tcggcagtgc
     2581 gcctttgaac tgcgttttat cgacaatcca ttcgctgaaa gtttctaccg tcacttccag
     2641 cggatcgtta gttgccgaag ccgaaggcgg tacgatgcgg tcaacggcgg aatcgacaaa
     2701 gccaacgtgt tcttctaccc acgctttggc gtcttccggc agggcgttca tcacatggcc
     2761 tttcagctgc gtggtaccgc gtaccatgtt ttcacaggcg atgatgttca gcggggattc
     2821 attaccttgt tctttgcgtt tcaccagccc tttggcgata gccggagcaa tacgttccag
     2881 cacaaccggg ccaacggcgg tagtgactaa atcgacctga gcaatcagat caacgacatc
     2941 atcaccaatg ctgctgacag cattgacgcc ggaaacggta tctacctgct cggtttcacc
     3001 aaccacatga acctgatagc tatgacgggc attcagggca tcaagtacca cctgattgac
     3061 atcggcaaac gtcagttgga tacccgcgtc tgccagcagt ttaccgataa agccacgacc
     3121 gatattacct gcgccaaaat gtaatgcttt catagtatta accttcatca atgtttttac
     3181 ccgagagggc tggggtgagg cttttccctc acccaaaccc tctccgtgag gagaggggca
     3241 gcgccggatg cggcgtaagc gccttatccg gcctacaaga acgtgcaaat tcaacaaatc
     3301 gtgatgcatc ctgtaggcct gataagcgta gcgcatcagg caattaaccc caccttctcc
     3361 atgtggagag ggtgggattg gattacttac gacctgccaa cagttccagc acttcatcca
     3421 cgctggtggt gtgtgccaga cgctcgatga cggactcatc atccagtgca ttggtcaggc
     3481 tggtgataac ctgaatgtgc tcgttgttac gggctgcaat accaatcacc agacgggcaa
     3541 tgtcatcttc ctcttcaccg aagcgcacgc cttccgggta ctggcagaac accacgcccg
     3601 ttttcagtac gcgatctttc gcttcaaccg taccgtgtgg caccgcgata gactcaccca
     3661 gataagtcgg ggtcagtttt tcacgatcca gcatcgcctg aacgtattcc ggctcaacgt
     3721 aaccgccttt caccagctgc tcgccagcaa aacgaatcgc ttcttctttg gttgctgctt
     3781 tgcgaccgag gaagatgttc tccgcgccca gtttgaacag gttagcactg gaatcgtcaa
     3841 agctgtcttt cagactgtct ttcactttca cttcgttttc agtatggcgc tgggcagcaa
     3901 ccagacgttc ggttaggctg gtgtacaggc cgctgtcgag gaagttggtc agcgaaatat
     3961 gctgtgcctg cggaacctgg cgcatagcgc gttcggtcag gtcacggtga gtgatgacga
     4021 ggtccacatc tggcggcagg ttgttgatcg cgctgttagt gaccgaaatc tgcgacagac
     4081 ctgcatcctg aattttctta cgcagcacgc ctgcgcccat cgcacttgaa cccataccgg
     4141 catcacaggc aacgatgatt ttacgtacgt ggctcaggtc gttagtcaca tcgcccgcag
     4201 acagcggaga tgtgccttta gactcagctt tcatgtcctg catacgacga gttgctgctt
     4261 caatatcatc ttcttctttc actttgctgg ttttcagcaa aatagcagag acaacgaagg
     4321 agacagccat cgccgcacac acacccgcga tgttagcgaa ataagcccct tttggtgtca
     4381 tcgccagtac agcaaggata gaacccggag atgccggaga aaccagacca ccgcccagga
     4441 tagtcagcgt gaacacgcca gtcataccgc cgaggatgac tgcgaggatc agacgcggat
     4501 tcatcagcac atacgggaag tagatttcgt ggataccacc caggaagtgg atgattgccg
     4561 caccgcccgc agactgttta gcgctaccac gaccaaagaa catgtacgcc agcagcacgc
     4621 ccatacctgg acctgggtta gcttcaatca ggaagaagat tgatttaccc agttcatggg
     4681 actgctgaat acccagcggc gagaagatac cgtggttaat ggcgttgttg aggaacagga
     4741 ttttcgccgg ttcaacaaag atagacgcca gcggcagcat gtcatggaca accatgaagt
     4801 taacgcccgc agccagcatt ttggacaggg cttcaacaat cgggccaatg ccgaggaatg
     4861 ccagaatagc gaggatcatc ccgatgatgc ctgcggagaa gttattcacc agcatctcaa
     4921 aaccggattt gatcttaccg tctacccagc ggtcgaagtg cttaatgcac cagccgccca
     4981 gcggacctgc aatcatagaa ccgaggaaca tcggcatgtc tgcgccgacg ataacgccca
     5041 tggtggtgat ggcaccgact acgccgccac gttcgccgcc taccagctta ccaccggtat
     5101 aaccgatcag cagcggcagg agataagtga tcatcggccc gaccagcttc gccagcgtct
     5161 cgttcgttaa ccaccctgtt ggaataaata acgcggtgat gataccccac gcgataaacg
     5221 cgccgatatt tggcatcacc atgttgctga ggaaacgacc aaagctttgc actttgatct
     5281 taatatcgga tgacataaaa acaccccttc ttatgtttgc tgtcgcgcag gctggaagcc
     5341 cgaggttttt tgttaatgtg gcggcagagg tagccggacc ttgtagatac tgcgaaatct
     5401 ggcactgaat cggttaactg tccagtcgac ggccttttgt gtgatattaa tcacataaat
     5461 ataggaggta gagaggtaat tgacgtgacg ttcatcacaa aacgcttgtg taaaaaagca
     5521 acaaggcggc gattttcgct aaaaatggca tttaaatgtg agtagtatca catttttgtt
     5581 ttgatggttt gttgaatctt tgtgatctga atcacaagat attttcttac ggcgttcacc
     5641 tgatgtgatc tacagcatgt tatgccttcg tcatacaatc gttatgtaac taagcaactc
     5701 atcacctcta aaaattattc tttggtgtta tggcgagaat cgcgaacccg gattattgtc
     5761 aaaatatcag cctgactccc ttctggctgc cagcccaaaa acaacactga taaacgtgaa
     5821 tccgaggcag atatgtttct aaactatttc gcgttgggag tgctgatctt cgtctttctg
     5881 gtgatttttt atggaatcat cgcgatacat gacatccctt atctgattgc caaaaagcgc
     5941 aatcaccccc atgccgacgc tattcatacg gcgggctggg tgagcctgtt tactctgcat
     6001 gttatctggc cgtttctgtg gatctgggcg acgctctatc aaccggagcg tggctggggt
     6061 atgcagtcac atgttgcgtc gcaggagaaa gcgactgacc cggaaatcgc ctcactttct
     6121 gaccgaattt cccggctgga gcatcaactc gccgccgaga aaaagactga ctattccacg
     6181 ttcccggaga tctaattatg gatctattga ttgttttaac ttacgtggcg ctggcgtggg
     6241 cggtctttaa aatcttccgc attccggtaa atcagtggac gctggcgacg gcggcgctgg
     6301 gaggcgtgtt tctggtgagt ggtttgattt tgttgatgaa ctacaaccac ccttacactt
     6361 ttaccgcgca aaaggcagtg atagcgatcc ctatcacgcc acaggtgacg ggaattgtta
     6421 ctgaagtcac tgacaagaat aatcagctta ttcaaaaggg cgaggtgctt tttaagctcg
     6481 acccggttcg ttaccaggcg cgagttgaca gacttcaggc tgacctgatg acggcgacgc
     6541 ataatataaa gacgctgcgt gcgcagctca ctgaagcgca ggccaacacc acccaggttt
     6601 cagcggagcg cgaccgtctg tttaaaaatt atcaacgtta cttgaaaggc agccaggcgg
     6661 cggtgaatcc gttctcggaa cgtgacatcg acgatgcgcg gcaaaatttc ctcgcgcagg
     6721 atgcgctggt gaaaggctcg gtggcggagc aggcgcagat ccagagccag ctcgacagta
     6781 tggttaacgg cgagcaatcg cagattgtga gcttaagagc gcaacttact gaagcaaaat
     6841 ataaccttga gcagactgtc attcgcgcgc cgagcaatgg ctacgttact caggtactga
     6901 tccgcccagg tacatacgca gctgccttgc cgctgcgtcc ggtgatggtc ttcatccccg
     6961 agcaaaaacg gcaaattgtc gcccaatttc ggcaaaactc gctgttacgt ctgaaacccg
     7021 gcgatgatgc ggaagtggtg tttaacgcgc tacctgggca ggtgtttcac ggcaaactga
     7081 ctagtatttt acctgtcgtg ccaggcggtt cttatcaggc gcagggggga ttgcaatcat
     7141 taacggtcgt gcccggcacg gacggtgtgc agggaaccat tgaactggac cctaacgatg
     7201 atatcgatgc cttacccgac ggcatctacg cccaggtggc ggtttactcc gaccatttca
     7261 gccatgtttc ggtgatgcgg aaagtgctgc taagaatgac cagctggatg cattatcttt
     7321 atttggatca ttgaggggga ggggggagat tatggaactt tgctccttgt aaggactaat
     7381 tatttttgca tattacttca ttagctgcga tgatttttct ttaatattca ttatgttaat
     7441 aagttctgga tgagtgtgct ctcattggat tttttatccg tcttgttctg ccgcaggatg
     7501 agactataca tcgtcgagat cgcaatgatg atatgagttg ttcctcctgc gacggctcta
     7561 atcaaaaaag agcaggagtg cttttccatc tattgcgatg atggctttat tatctgaagg
     7621 atgacagtca catttaaaaa atatttaatc tatagatcac aatgtagggt catggaatat
     7681 atgtatacaa ctattttctt cttcactttt aattatcgta ttcattataa aactaagtta
     7741 aaaaaactcc tggagagtga gttattaata tatttttaaa taaaattaag ttatcattca
     7801 tcgatgcatt ttatagaatc atcaatggcc ataatagtac tattaactct caattttata
     7861 tttttatcat cactacaaat attaactgaa tttatatcaa tgattttttt attcttatct
     7921 tttattttat ttactgtttc aatgcaatca gcggcaagtt ggagtggatt tagatttttc
     7981 agatatggtc ttatgatctt tcccttactt aataaatagc atgtatagga ttcggaaagt
     8041 ccagcatcta ttttgtacct cattatatta gataaggatg tgagaaattc cttgttatca
     8101 ttcgcagcca tatatgccag tccgagttca gcctctgcgg ccttacaggc aaaatagctt
     8161 agtgaacacg cttttcgttc ctctttagta ctggctgata ttagtgccca taatattgct
     8221 ttgtctgcca aatctaactc tctctgaaat tgtcttgcag taactgcact cgcagaaata
     8281 gagaaaaaaa tacaattgtt aataaccttg ccatattttt ttagtccgta actgttaatg
     8341 tgctatctgg ctctgaaaat attaactcat ttaatttttg catgtcatta gataaaccag
     8401 ttatacaacc ctcggaacag aatcgaggtc ctaaagacgg accaaaagcg tttaaacaac
     8461 tatgtattga aaatccattg cgattataag ttcctgtatt aactgacggt actaatcgta
     8521 tgccgtcagg ttttctattg cttgctcccg ggtcattaac attccaactc cataggcctt
     8581 gaggtattgg ccatctattt ataaatgtgt acaacgggga ttatttttac attgcatatt
     8641 attaccagaa gcgactggaa tactaagcac atcataaaaa ttatcatcac atggtatatc
     8701 tgaaacacac gaaagcatac ctaaagttat gctgtataaa caggtggcta atcccaaggg
     8761 gatcgattcc agaaatcggg ttcaacggat actgataaaa attccaccta ccttccagcc
     8821 caatcggagc ctgagtgtta taccgcccct gctgcggtta atgttaccga taatagttat
     8881 agtacagccc tgattcatca tcatactact gctgcggcag tctgatgaac tattgctttt
     8941 acggattctc cttattcttc cttctatcca ttcgctttag ctttttgagc tcttgaagtt
     9001 tgctctttgc atcaatatta ccgttattta cagcgaattc catccaataa atagctctat
     9061 tcaaattata atattctgat aatgttggat ttgtatctga taaaaagacc ccataattaa
     9121 actgcgctgt aacattcccc tgagatgctg atctttccaa gaatcgcaat tgtttatcaa
     9181 tattattttt agtaaagcag taatattgat atagtcgaaa tgatgcctct gaatcaccat
     9241 gttgtgattt atacttcagt ttcatcagct tttcttcact taaatcatag gtcattgctg
     9301 tagatcccat cacactttcg ttttctttta ttttcacatc agcaccatgc aattgatcaa
     9361 taagagaaaa ataaaaaaat agtaacaagc atgctttcat acatctacaa cctatcttat
     9421 atcactgggt ttttctggcg taccttgcat attagaaatg gggtgcccag atggcccata
     9481 tgttatccaa ttaccaaggt cttttgttgt tatagccatt agatccttat ttgaattaag
     9541 gttcgttggt gctgttagca ctgtatccat ttttaactta ccattagttc ctcgccccca
     9601 ccacgtccat agcgtgtcag gtcctattac atttgtatgt aactctttag ctaattggct
     9661 agcaaatgaa ttttgtcctt tacttgtatt acaagaaaat aaccaaactg tcatcccatc
     9721 tttataattc ccatcaaatt taattagata tgctagatct ttagctgtca tgatactgcg
     9781 cgttgcggat tcaatagatg tgggggtacc atgccccccg attgtgaaaa cgcctgggat
     9841 attaatctca tcagctacag aatggataag atcactttcg gggtataaat ttatatcaac
     9901 caaaccttgc ggatctacat ttatgaccgg attcaacgga tactgataaa aattccatcc
     9961 ccccttcagc ccaatcggat cctgagtgat ataccgcccc tgcagcgggt cataatagcg
    10021 gtggcggttg taatacaggc cggactcctc atcatactgc tgacccggca ggcgaatgag
    10081 ctgctgcaga tgatgcgggt tctcatcact cagcaggttg ctccattcat catattctgc
    10141 gcaccacgct gttgcccctt ccgtgctgat gagcgccagc ggcaggccgc gatggtcgca
    10201 gtggtacagg tggatttttc gcgccggcgt gtacaccggg tccatctggc tttgcatctg
    10261 cgccaccgtc aggccgcacg atgccagcca gcggcggctt tcctcactca cccggtcagc
    10321 caggatttca ctttccagcc ggtcgagcat ctgcaccagc accggcggga acaccacact
    10381 gccaccgtct tcgccgccgg actgctgaag ggtatccgcc aggctgcggc gctgcgtttt
    10441 cg
//
LOCUS       DAJVUY010000146        10424 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.146, whole genome shotgun sequence.
ACCESSION   DAJVUY010000146 DAJVUY010000000
VERSION     DAJVUY010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10424
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.146"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            141..2009
                     /gene="kup"
                     /locus_tag="OQQ72_003332"
     CDS             141..2009
                     /gene="kup"
                     /locus_tag="OQQ72_003332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HCS2012951.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP
                     FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW
                     NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSLTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ72_003333"
     CDS             2176..2595
                     /gene="rbsD"
                     /locus_tag="OQQ72_003333"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HCS2012952.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ72_003334"
                     /pseudo
     CDS             2603..4072
                     /gene="rbsA"
                     /locus_tag="OQQ72_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ72_003335"
     CDS             4077..5042
                     /gene="rbsC"
                     /locus_tag="OQQ72_003335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HCS2012953.1"
                     /translation="MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTIN
                     NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA
                     AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
                     FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNK
                     IKIIVYSLCGLLASLAGTIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV
                     GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ"
     gene            5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ72_003336"
                     /pseudo
     CDS             5067..5953
                     /gene="rbsB"
                     /locus_tag="OQQ72_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ72_003337"
     CDS             6079..7008
                     /gene="rbsK"
                     /locus_tag="OQQ72_003337"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS2012954.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR"
     gene            7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ72_003338"
     CDS             7012..8004
                     /gene="rbsR"
                     /locus_tag="OQQ72_003338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HCS2012955.1"
                     /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ72_003339"
     CDS             complement(7970..9397)
                     /gene="mdtD"
                     /locus_tag="OQQ72_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtD"
                     /protein_id="HCS2012956.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     WATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9420..10112)
                     /locus_tag="OQQ72_003340"
     CDS             complement(9420..10112)
                     /locus_tag="OQQ72_003340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS2012957.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KTCQALLRSPDK"
BASE COUNT         2550 a         2515 c         2751 g         2608 t
ORIGIN      
        1 aaggggggta tttttctttg agccaggtta atgtggccgc atttaggagt acgattttgc
       61 cgttaatcgt gcatactgtg cgcttttttg tgggccaagg gactaagcac acatttcata
      121 tttcaacgaa agactagtct atgagcactg ataataagca atcattgccc gcgattaccc
      181 tcgcggcgat tggagttgtc tacggcgata ttggtaccag cccgttatat acacttcgtg
      241 aatgtttgtc cggccagttt ggttttggcg ttgaacgcga tgccgtgttt ggctttttat
      301 cgctgatctt ctggctgcta atctttgtgg tttccattaa atatctcacc ttcgtgatgc
      361 gggcagataa cgccggtgag ggggggatcc tgacgttgat gtcgcttgcc gggcgtaata
      421 cgtcggcgcg aaccacatca atgctggtga ttatggggct aatcggcggc agctttttct
      481 atggtgaagt cgtcataaca cccgctattt cggtgatgtc agccattgaa ggtctggaaa
      541 tcgtcgcccc gcagctggat acctggatag ttcccctctc aattatcgtt ctcactttat
      601 tatttatgat tcaaaaacat ggcacggcta tggtcggtaa gctgtttgcg ccgatcatgc
      661 tgacctggtt tttgattctg gcaggactgg ggttacgtag cattattgct aacccggaag
      721 tgctgcatgc gctgaatcca atgtgggcgg tgcatttctt ccttgaatac aaaacggttt
      781 cttttattgc attaggggca gtggtgttgt cgattacggg ggtcgaggcg ctgtatgctg
      841 atatggggca ctttggtaag ttccctattc gcctggcgtg gttcaccgtc gtattacctt
      901 ccttgaccct taattacttc ggtcagggag cgctgttgtt aaagaacccg gaagcgatta
      961 agaacccgtt cttcctgttg gcaccggact gggcgctgat cccgctgctg atcatcgccg
     1021 cactggcgac ggtaattgcc tcgcaggcgg ttatctctgg cgtcttctca ttgacgcgtc
     1081 aggcggtacg tctgggatat ttgtcgccga tgcgcattat tcacacctcc gaaatggagt
     1141 cagggcaaat ctatattccg tttgtgaact ggatgctcta tgtcgcggtc gtgattgtga
     1201 ttgtcagctt tgagcactcc agcaacctgg cggcggcgta cgggattgcg gtgaccggaa
     1261 ccatggtgct gacgtctatt ctctcgacta ccgtggcacg tcagaactgg cactggaata
     1321 agtattttgt tgcgctgatc ctgattgctt tcctttgtgt cgatattcca ttgttcaccg
     1381 ctaacctcga taaactgctc tccggcggtt ggttgccatt gagcctcggt acggtgatgt
     1441 ttatcgtgat gaccacctgg aagagcgagc gtttccgctt gctgcggcgg atgcatgaac
     1501 atggtaactc tctggaagcg atgattgctt cgctggagaa atcaccgcct gttcgcgtgc
     1561 ccgggaccgc ggtgtatatg tcgcgtgcaa tcaacgtcat tccctttgcg ctgatgcata
     1621 accttaaaca taacaaggta ttgcatgagc gggtgattct gttaactctg cgtaccgaag
     1681 acgcgccata tgtccataat gtccgtcggg tacagattga acaactgtcg ctcactttct
     1741 ggcgcgtggt ggcaagttat ggttggcgag aaacgccaaa cgtggaagaa gttttccacc
     1801 gctgcggtct ggaaggatta agttgccgga tgatggaaac ctccttcttt atgtcgcatg
     1861 agtcgttgat cctcggcaaa cgcccgtggt atttgcgtct gcgcggcaag ctgtacttgc
     1921 tgctgcaacg taatgcgctg cgtgcaccag atcaatttga aatcccgcca aacagggtta
     1981 tcgaactggg tactcaggtc gaaatctaac gccagacgcc tcctttctcc ataagggggc
     2041 gtttttgttt tcatggttaa tcaccatgta aaacgtttcg aggttgatca catttccgta
     2101 acgtcacgat ggttttccca actcagtcag gattaaactg cgggtcagcg aaacgtttcg
     2161 ctgatggaga aaaaaatgaa aaaaggcacc gttcttaatt ctgatatttc atcggtgatc
     2221 tcccgtctgg gacataccga tacgctggtg gtgtgtgatg ctggtttacc catccccaaa
     2281 agtacaacgc gtatcgatat ggcattaacc cagggtgtac cttcttttat gcaggtgctg
     2341 ggcgtcgtta caaatgaaat gcaggtcgag gctgccatta tcgcggaaga gatcaaacaa
     2401 cataatccgc aactccacga aacgttgctc actcaccttg agcagctgca aaaacaccag
     2461 ggaaatacca ttgaaattcg ttacaccacg catgaacaat tcaaacaaca aaccgcagaa
     2521 agtcaggcgg taattcgcag cggagaatgt tctccgtatg cgaatatcat tctctgtgct
     2581 ggcgtgacgt tctgaggccg tcatggaagc attacttcag cttaaaggca tcgataaagc
     2641 cttcccgggc gtaaaagccc tctcgggcgc tgcgttaaat gtctatccgg gccgcgtgat
     2701 ggcgctggtg ggcgaaaacg gcgcgggtaa atccaccatg atgaaagtgc ttactggtat
     2761 ctatgctcgc gatgccggca cgcttttatg gctggggaaa gaaacgacat ttaccgggcc
     2821 gaaatcttcc caggaagccg ggattgggat tatccatcag gaactgaacc tgatcccgca
     2881 gttgaccatt gccgaaaaca ttttcctcgg tcgtgagttt gttaatcgct ttggcaaaat
     2941 tgactggaaa accatgtatg ccgaagcgga taaattgctg gctaaactta acctgcgctt
     3001 taaaagcgac aagctggtgg gcgatctttc catcggtgac cagcaaatgg ttgaaatcgc
     3061 caaagtgctg agctttgagt cgaaagtcat cattatggat gaaccgaccg atgcgctgac
     3121 cgataccgaa accgaatccc tgttccgcgt catccgcgaa ctaaaatcgc aaggccgcgg
     3181 tattgtctat atctcccacc gcatgaaaga aatcttcgag atttgcgatg ccgttaccgt
     3241 ttttcgtgac gggcaattta ttgctgagcg cgaagtggca tcactgaccg aagattcgct
     3301 gattgagatg atggtgggtc gcaagctgga agatcaatat ccacacctgg acaaagcgcc
     3361 gggagatatc cgcctgaaag tcgataatct ctgcggacct ggcgttaacg atgtctcttt
     3421 tactttacgc aaaggcgaaa ttcttggcgt ctctggtttg atgggcgcag gtcgtaccga
     3481 actgatgaaa gtgctctacg gcgcactacc gcgcaccagc ggttacgtca ccctggatgg
     3541 gcatgaagtc gttacccgtt caccgcagga tggcctggca aacggcattg tgtatatctc
     3601 cgaagaccgt aaacgtgacg gtttagtgtt gggcatgtca gtaaaagaga acatgtcgct
     3661 gacagcgctg cgctacttca gccgcgctgg cggcagtttg aagcatgccg atgaacagta
     3721 ggctgtgagt gatttcattc gtctgtttaa tgtgaaaaca ccgtcgatgg aacaggcaat
     3781 tggtctgctt tccggtggca atcagcaaaa agtgttgatc cttgatgaac ctacccgtgg
     3841 cgtagatgtc ggcgcgaaaa aagagatcta tcaactgatt aaccagttca aagccgatgg
     3901 cttgagcatc attctggtgt catcggagat gccagaagta ttaggcatga gcgatcgcat
     3961 catcgtcatg catgaagggc atctcagcgg ggaatttact cgtgagcagg ccacccagga
     4021 agtgttaatg gctgccgctg tgggcaagct taatcgcgtg aatcaggagt aaaaaaatga
     4081 caacccagac tgtctctggt cgccgttatt tcacgaaagc gtggctgatg gagcagaaat
     4141 cgcttatcgc tctgctggtg ctgatcgcga ttgtctcgac gttaagcccg aactttttca
     4201 ccatcaataa cttattcaat attctccagc aaacctcggt gaacgccatt atggcggtcg
     4261 ggatgacgct ggtgatcctg acttcgggca tcgacttgtc tgtaggttct ctgttggcgc
     4321 taaccggcgc agttgctgca tctatcgtcg gcattgaagt caatgcgctg gtggctgtcg
     4381 ctgctgctct cgcgttaggt gccgcaattg gtgcggtaac cggggtgatt gtagcgaaag
     4441 gtcgcgttca ggcgtttatc gctacgctgg ttatgatgct tttactgcgc ggcgtgacca
     4501 tggtttatac caacggtagc ccagtgaata ccggctttac tgagaacgcc gatctgtttg
     4561 gctggtttgg tattggtcgt ccgctgggcg taccgacgcc agtctggatc atggggattg
     4621 tcttcctcgc ggcctggtac atgctgcatc acacgcgtct ggggcgttac atctacgcgc
     4681 tgggcggcaa cgaagcggca acgcgtcttt ctggtatcaa cgtcaataaa atcaaaatca
     4741 tcgtctattc tctttgtggt ctgctggcat cgctggccgg gaccattgaa gtggcgcgtc
     4801 tctcctccgc acaacccacg gcggggactg gctatgagct ggatgctatt gctgcggtgg
     4861 ttctgggcgg tacgagtctg gcgggcggaa aaggtcgcat tgttgggacg ttgatcggcg
     4921 cattaattct tggcttcctt aataatggat tgaatttgtt aggtgtttcc tcctattacc
     4981 agatgatcgt caaagcggtg gtgattttgc tggcggtgct ggtagacaac aaaaagcagt
     5041 aataacgact acaggacatc ttgaatatga acatgaaaaa actggctacc ctggtttccg
     5101 ctgttgcgct aagcgccacc gtcagtgcga atgcgatggc aaaagacacc atcgcgctgg
     5161 tggtctccac gcttaacaac ccgttctttg tatcgctgaa agatggcgcg cagaaagagg
     5221 cggataagct tggctataac ctggtggtgc tggactccca gaacaacccg gcgaaagagc
     5281 tggcgaacgt gcaggactta accgttcgcg gcaccaaaat tctgctgatt aacccgaccg
     5341 actccgacgc agtaggtaat gctgtgaaga tggctaacca ggcgaacatc ccggttatca
     5401 ctcttgaccg ccaggcaacg aaaggtgaag tggtgagcca cattgcttct gataacgtac
     5461 tgggtggcaa aatcgccggt gattacatcg cgaagaaagc gggtgaaggt gccaaagtta
     5521 tcgagctgca aggcattgct ggtacatccg cagcccgtga acgtggcgaa ggcttccagc
     5581 aggccgttgc tgctcacaag tttaatgttc ttgccagcca gcagattttg atcgcactaa
     5641 aggtttgaac gtaatgcaga acctgttgac cgctcatccg gatgttcagg ctgtattcgc
     5701 gcagaatgat gaaatggcgc tgggcgcgct gcgcgcactg caaactgccg gtaaatcgga
     5761 tgtgatggtc gtcggatttg acggtacacc ggatggcgaa aaagcggtga atgatggcaa
     5821 actagcagcg actatcgctc agctacccga tcagattggc gcgaaaggcg tcgaaaccgc
     5881 agataaagtg ctgaaaggcg agaaagttca ggctaagtat ccggttgatc tgaaactggt
     5941 tgttaagcag tagttttaat caggttgtat gacctgatgg tgacataaat acgtcatcga
     6001 cagatgaacg tgtaatataa agaaaagcag ggcacgcgcc accctaacac ggtggcgcat
     6061 tttatggaca tcccgaatat gcaaaacgca ggcagcctcg ttgttcttgg cagcattaat
     6121 gctgaccaca ttcttaatct tcaatctttt cctactccag gcgaaaccgt aaccggtaac
     6181 cactatcagg ttgcatttgg cggcaaaggc gcgaatcagg ctgtggctgc tgggcgtagc
     6241 ggtgcgaata tcgcgtttat tgcctgtacg ggtgatgaca gcattggtga gagcgttcgc
     6301 cagcagctcg ccactgataa cattgatatt actccggtca gcgtgatcaa aggcgaatca
     6361 acaggtgtgg cgctgatttt tgttaatggc gaaggtgaga atgtcatcgg tattcatgcc
     6421 ggcgctaatg ctgccctttc cccggcgctg gtggaagcgc aacgtgagcg tattgccaac
     6481 gcgtcagcat tattaatgca gctggaatca ccactcgaaa gtgtgatggc agcggcgaaa
     6541 atcgcccatc aaaataagac tatcgttgcg cttaacccgg ctccggctcg cgaacttcct
     6601 gacgaactgc tggcgctggt ggacattatt acgccaaacg aaacggaagc agaaaagctc
     6661 accggtattc gtgttgaaaa tgatgaagat gcagcgaagg cggcgcaggt actgcatgaa
     6721 aaaggtatcc gtactgtact gattacttta ggaagtcgtg gtgtatgggc tagcgtgaat
     6781 ggtgaaggtc agcgcgttcc tggattccgg gtgcaggctg tcgataccat tgctgccgga
     6841 gataccttta acggcgcgtt aatcacggcg ttgctggaag aaaaaccatt gccagaggcg
     6901 attcggtttg cccatgctgc agctgcgatt gccgtaacac gtaaaggcgc acaaccttcc
     6961 gtaccgtggc gtgaagagat cgacgcattt ttagacaggc agaggtgacg cttggctaca
     7021 atgaaagatg ttgcccgcct ggcgggcgtt tctacctcaa cagtttctca cgttatcaat
     7081 aaagatcgct tcgtcagtga agcgattacc gccaaagttg aagcggcgat taaagaactc
     7141 aattacgcgc catcagccct ggcgcgtagc ctcaaactca atcaaacaca taccattggc
     7201 atgttgatca ctgccagtac caatcctttc tattcagaac tggtgcgtgg cgttgaacgc
     7261 agctgcttcg aacgcggtta tagtctcgtc ctttgcaata ccgaaggcga tgaacagcgg
     7321 atgaatcgca atctggaaac gctgatgcaa aaacgcgttg atggcttgct gttactgtgc
     7381 accgaaacgc atcaaccttc gcgtgaaatc atgcaacgtt atccgacagt gcctactgtg
     7441 atgatggact gggctccgtt cgatggcgac agcgatctta ttcaggataa ctcgttgctg
     7501 ggcggagact tagcaacgca atatctgatc gataaaggtc atacccgtat cgcctgtatt
     7561 accggtccgc tggataaaac tccggcgcgc ctgcggttgg aaggttatcg ggcggcgatg
     7621 aaacgtgcgg gtctcaacat tcctgatggc tatgaagtca ctggtgattt tgaatttaac
     7681 ggcgggtttg acgccatgcg ccaactgtta tcacatccgc tgcgtcctca ggccgtcttt
     7741 accggaaatg acgctatggc tgttggcgtt taccaggcgt tatatcaggc agagttacag
     7801 gttccgcagg atatcgcggt gattggctat gacgatatcg aactggcaag ctttatgacg
     7861 ccaccattaa ccactatcca ccaaccgaaa gatgaactgg gggagctggc gattgatgta
     7921 ctcatccatc ggataaccca gccgaccctt cagcaacaac gattacaact tactccgatt
     7981 ctgatggaac gcggttcggc ttagatttac gctgtctttt gatcaaatta ttaccatcgg
     8041 ttgttttcag aagcatgaac attgctgctg aagcaacagt aataatgccc atcgtgataa
     8101 acgtatagtg gaattgttcg acagtcgttg tgccttccat cccttcataa acgcgaagga
     8161 cggccgcact tacagcaacg cctaaactaa tcgacagttg ctgcgtgacc gccagaacac
     8221 tgttaccgct gctggcgttg tcatcggtca gatcggcaag tgtgatggta ttcatcgcgg
     8281 taaattgcgt cgacatagcc atccctaata taaacaacgg caagatcagc atccatatcg
     8341 ccattgccgg tgattgcaaa gagaactgag cgatcattag cccaataatc accgtgatcc
     8401 ccactaacgt atggcgatag cccagacgac gtaagacttg ggtaaccatc gattttgcaa
     8461 taatggaacc taacgctgtc ggtgccatca tacagccggc aataaacgcc tgataaccaa
     8521 atcctacctg taacatcaat ggcataagga acggtacact accggtcccc agacgggttg
     8581 caatattgcc tacgataccg atcgagaaag tgcgggtttt aaataaatct aatgaaatta
     8641 atgggtttgg cgtgtgtcgc gcatggagaa tatagagaag cagtaacccg atgctggtga
     8701 caattaccgt caaggcaatc cagctggcga caatcttttc cccgaatagc tctattccgc
     8761 ttgagaagag aacaaggctg aggccaaaca gcaaaaagcc agtgatatcg aatctgcgtc
     8821 gtgcggtggt gaaattgggc atatgtttgc gcgcgtaaag aaggcccgca atacctatgg
     8881 ggatattgat taaaaatatc cagtgccagg ttgcccaggt gaccagcacg ccgccaagaa
     8941 cggggcctaa aattggcccc accagacccg gcatggcgac aaaattcaat acaggaagaa
     9001 gttcattacg aggataagca cgcagtaagg ccagccgagc aacaggcatc atcattgcgc
     9061 cgcctatccc ctgaataacc cggaagacaa ccagctgtgg tagcgaatta gaaagtgcgc
     9121 aggccagaga acccaacgtg aacagactca cggcaagggt aaaaatgcga cgcgtaccga
     9181 agcgatcggc tagccatccg cttaccggaa taaacatcgc caccgtcagc gtataactga
     9241 tgatggctga ttgcatcgcg agaggagaac gattaaggct atgagcgatt gcgggtaagg
     9301 cggtattcag aatagtggca tcaagtgcct gcatgaagaa ggccatcgcc gcgatccacg
     9361 gcaaacccgc catactacgc ttctttttat cgctcattca atgtcctgtt atcgggttat
     9421 cacttatcag gtgagcgtag cagcgcctga caagttttaa atgccgcgtc gccatcgctt
     9481 tggataatcg catcgacaat cgcctggtgc agatccagct ttatcactgt gtcgctggta
     9541 attgacgtga agtaagtgtg ataaaccgaa tggaatagcg aggcgaatga ggtcaaaaac
     9601 ggattggcgc tcatttcata gatatgctca tgccaggcca tatcgacttc gatccagcgt
     9661 tcacggcgaa agttcttttt taatgccgcc atttcggcca ttaacgtatt gagatgcgcc
     9721 ttctgttccg cggtgccaac cgttgctgcc agtaggcagg cttgcggctc cagacagata
     9781 cgcataacca gaaagtgatc gatgacctga tgaaagttct cttctgtcat ccaccaggta
     9841 agcaattcct gatcaagaaa attccagttt gattgtggca tgacccgggt accaattcgc
     9901 ggtcgcggta aaaccatccc ttttgccgtt aacgttttga ccgcttcgcg taccgctgta
     9961 cgactcactc caaattgctc gcccagctca atctcaccag gcaaaatggt gccgggttca
    10021 tattcacctt ttaagatgcg ttgcgccagc ttctcagcca gaacatacga aaggtttttc
    10081 tgtgcagcta actgttgtgc gcttaaaggc attactaatc ttcctttttc tttttattcc
    10141 tccttagtat gccaccagga agtgtgatta cggttgcaaa aacggcaaat tgcttgtttt
    10201 atggcacatt aacggggctt ttgctgaaaa agtgcgcggt cagaaaatta ttttaaattt
    10261 cctcttgtca ggccggaata actccctata atgcgccacc actgacacgg aacaacggca
    10321 aacacgccgc cgggtcagcg gggttctcct gagaattccg acagagaaag caaaaataaa
    10381 tgcttgactc tgtagcggga aaacgtatta tgcacacccc gcgc
//
LOCUS       DAJVUY010000147        10370 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.147, whole genome shotgun sequence.
ACCESSION   DAJVUY010000147 DAJVUY010000000
VERSION     DAJVUY010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.147"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(37..1032)
                     /gene="gapA"
                     /locus_tag="OQQ72_003341"
     CDS             complement(37..1032)
                     /gene="gapA"
                     /locus_tag="OQQ72_003341"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS2012958.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
     gene            1374..1787
                     /gene="msrB"
                     /locus_tag="OQQ72_003342"
     CDS             1374..1787
                     /gene="msrB"
                     /locus_tag="OQQ72_003342"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HCS2012959.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            1829..2101
                     /locus_tag="OQQ72_003343"
     CDS             1829..2101
                     /locus_tag="OQQ72_003343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HCS2012960.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="OQQ72_003344"
     CDS             complement(2262..2903)
                     /gene="pncA"
                     /locus_tag="OQQ72_003344"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HCS2012961.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="OQQ72_003345"
     CDS             complement(2914..3930)
                     /gene="ansA"
                     /locus_tag="OQQ72_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HCS2012962.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="OQQ72_003346"
     CDS             complement(4097..5953)
                     /gene="sppA"
                     /locus_tag="OQQ72_003346"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HCS2012963.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDHNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPSAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6114..6665
                     /locus_tag="OQQ72_003347"
     CDS             6114..6665
                     /locus_tag="OQQ72_003347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HCS2012964.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTPFVTYF"
     gene            6782..7825
                     /gene="selD"
                     /locus_tag="OQQ72_003348"
     CDS             6782..7825
                     /gene="selD"
                     /locus_tag="OQQ72_003348"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HCS2012965.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            7830..9791
                     /gene="topB"
                     /locus_tag="OQQ72_003349"
     CDS             7830..9791
                     /gene="topB"
                     /locus_tag="OQQ72_003349"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS2012966.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            9918..>10370
                     /locus_tag="OQQ72_003350"
     CDS             9918..>10370
                     /locus_tag="OQQ72_003350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012967.1"
                     /translation="MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGF
                     YLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQ
                     AKGIEPLSIEKLQALQLITPYRFYHKQWSETLEFWPRKPEPGKDTFQYH"
BASE COUNT         2611 a         2534 c         2736 g         2489 t
ORIGIN      
        1 gaagtcgctc tttttagatc acagtttcat ctcaacttat ttggagatgt gagcgatcag
       61 gtccagaact ttgttggagt aaccggtttc gttgtcgtac caggatacca gtttcacgaa
      121 gttgtcgttc agagcgatac cagctttagc atcgaacacg gaagtgcaaa cttcgccgtt
      181 gaaatcggta gatactacgt catcttcggt gtagcccaga acgcctttca tttcgccttc
      241 agcagcggct ttaacggcag ctttgatctg ctcgtaagtt gcagcttttt ccagacgaac
      301 ggtcaggtca actacggata cgttcggggt cggaacgcgg aacgccatac cagtcagttt
      361 gccattcagt tctggcagta ctttacctac agctttagca gcaccggtag aggacgggat
      421 gatgttctgg gaagcgccgc ggccgccgcg ccagtctttg tgagacgggc catcaacggt
      481 tttctgagta gcggtagtag cgtgaacggt ggtcatcaga ccttcgatga tgccgaagtt
      541 atcgttgata actttagcca gcggagccag gcagttggtg gtgcaggaag cgttggaaac
      601 gatgtcctgg ccagcatatt tgtcgaagtt agcgccttta acgaacatcg gagtgttgtc
      661 tttagacgga ccagtcataa ccactttctt cgcaccagcg gtgatgtgtt tacgagcagt
      721 ttcgtcagtc aggaacagac cagttgcttc agcgacaacg tcaacaccaa cttcgtccca
      781 tttcaggtta gccggatcac gttcagcggt aacacggatt tttttaccgt taacgatcag
      841 atgaccgtct ttcacttcaa cggtaccgtc gaaacggccg tgagtggagt catatttcag
      901 catgtatgcc atgtaatcag cgtctaacag gtcgttgatt gcaacgatct cgatgtcaga
      961 acgtttctga gcagcacgga aaacaatgcg accgatacgg ccaaaaccgt tgatacctac
     1021 tttgatagtc atatattcca ccagctattt gttagtgaat aaaaggttgc ctgtaaaatt
     1081 acaaaaacct tacgcagcgt caagcggaat cgtgtcaatc attgcgacaa atcaatcctg
     1141 tgcctaagca ttatgcgact gactcgcctc actcttcctt tgggcttgaa accacatggg
     1201 gtcggcgccc cgaattttaa agggcaatta cgataaaaat gtgattttca tcacgattta
     1261 ggtgcagcca tttcgtcgag atcaagttta ggacaaaatt ttgccagttg gtgttaatgt
     1321 tttgttagaa tcagtcacgt aatgtgagca cgattaaagt gagatgtgag caaatggcta
     1381 ataaaccttc ggcagaagaa ctgaaaaaaa atttgtccga gatgcagttt tacgtgacgc
     1441 agaatcatgg gacagagccg ccatttacgg ggcgtttact gcataacaag cgtgacggcg
     1501 tatatcactg tttgatctgc gatgccccgc tgtttcattc cgaaaccaag tatgattccg
     1561 gctgtggctg gcccagtttc tacgaaccgg tgagtgaaga atccattcgt tatatcaaag
     1621 acttgtcaca tggaatgcag cgcatagaaa ttcgttgcgg taactgtgat gcccatctgg
     1681 ggcatgtctt tcccgacggg ccgcaaccaa caggcgaacg ttattgtgtt aactctgctt
     1741 ctttacgctt cactgatggc gaaaacggcg aagaaatcaa cggttgaaaa aacgattcag
     1801 caacttattc cacaggagcg gaaaaattat gaatcttgat gacattatca acagcatgac
     1861 gcctgaggta taccagcgtt tgtcgaccgc cgttgaactg gggaaatggc ctgatggcgt
     1921 tgcgttgacc gaggaacaaa aagagaattg cctgcaactg gtgatgctgt ggcaagcccg
     1981 ccataatacc gaagcacagc atatgacaat tgacacaaat ggtcagatgg tcatgaagag
     2041 caaacagcag ttaaaagaag attttggtat ctcagcaaag cctattgcta tgtttaagtg
     2101 aatgagttat ctagtattta agcctgttat taagggaggg caaatatact tgttcggacg
     2161 tcgtgtttta gctgcaagta ggttaaatgc aacactgaca agtattatct ggcctacaat
     2221 gtcattgagg aaatgtaggc cagagatgaa ttcaactaat attacccctg tgtctcttcc
     2281 cagtctgcca gcgtatatag cgttgcccca gctgctgaca tctccataaa cgcgtgtgca
     2341 ctgtcctggg gctggatatt cacgccacga caaccatcgg taatcacgtt caccttataa
     2401 cctaactgta acgcgtccag cacggtaaac ttcacgcaat agtcagtagc caggcccata
     2461 acgatcaatt catcgatttc atgatcgcgt aaccagtcat cgagagaggt tttctgccga
     2521 cggccgttat caaaaaaggc actgtaactg tcaactaaag gattttcgcc tttatggaac
     2581 accgctgcga tcgctttttg gttcagtaac ggatgtaatt gtgcgccttc actgttctgc
     2641 acacagtgat ctggccagaa ggtttgtggc aaaccgtcga gttggcctgg cgtataaggc
     2701 tctacaccgt gctgactggc aaaactgccg tgattcgccg gatgccagtc ctggctggcg
     2761 ataaccgctt ctccgcgcga ctggcaccag tcaataaggc ggttagcaac ctccaccgta
     2821 ctgtcacctt ccggtacggc gagcgcgcca ccagcacaga aatcattttg taaatcgacc
     2881 agtaacaggg cgcgatgggg cattgcagtc tccttaatca tccggcgtca gttcgccgcg
     2941 caggttttgg ctcatggcct tgcgaatggt ttcagtatcc agttcctggc tcagcaggta
     3001 atgcagtttg gttagcgtgg cttctacagt catatctgca ccgccaataa cgccggcatg
     3061 ggcgagggcg ttaccggtgg cataaccacc catattcact ttaccggaca tacattgtgt
     3121 caggttgacc accacaatac cgcgatcgct ggcttcttgt aattcctgca ggaaggcttt
     3181 gttttgtggc gcattaccca cgccatagga gcgcagaatc aatgctttca ctggttggcg
     3241 cagaaaattg cgcacgacat cagcagaaat ccccggataa atcgtcacta cgccaattgg
     3301 ttgtggcgtg attggatgaa cgattaattc cccttcaccg tgcggggcgg gtggcgtatt
     3361 caaacgacga atatggatac cagcttccag taacggagga aggtttggag aggcaaacgc
     3421 atcaaaacca tcggcatggg ctttggtagt gcggttgccg cgatacaatc ggttattgaa
     3481 aaagagcgtt acttcgttga tcggataatt cgccgcaacg tacaacgcat tcagcagatt
     3541 aatttgtccg tcagagcgta actcagccag cgggatttgt gaccctgtca caatgaccgg
     3601 tttaccgaga ttctcgagca tgaacgacag cgcagaggcg gtatacgcca tcgtgtcggt
     3661 accgtgtaga atgacaaaac catcatagtc gtcatagtgc gctttaatat cttcagcaat
     3721 atgctgccag tcatccggcg tcatatcaga agaatccatc aacggcgtat attcatgaat
     3781 ggtgaaatct ggcatctccg ggcgatggaa ttccggcatc agcgccagtt ggcgttgtag
     3841 atgacctgac accggaatat aaccctgctc ggaacgctgc atcccgatgg tcccgcccgt
     3901 gtaggcgacg taaattgatt tcttttgcat gatattgata tgaatgatat cgaaagagca
     3961 aaagtatata cgtgaggcag gaggagcgca cctgatacta tgcggataag gaaatatggg
     4021 gcgagacagc gggaagagga ttcgtcgagg taaaaaataa tgtggccgac gatctgtcgg
     4081 ccactcagta caagacttaa cgcacgttgg cgcaggtcag gcaaaacgca taacggtttt
     4141 gtgggtcgtt aaacgcggcc agcttgtcgc tttcactttt aacggtagag gctaccgagg
     4201 caagcggtgc aggtaacatg gcctggaacg catctggcaa cattgcccgg acagaaccag
     4261 acatgttgtc catcactttg tcgaagaagg tcggttcatc aacgtagtat tccagatgcc
     4321 actgtttcac ttttgcgagc tctgctgctt tggcaaccgc atcatcgaaa tccccgagac
     4381 tatcgaccag cccgttagct tttgcatcct gaccggtcca gacgtggccc tgggcgattt
     4441 tatcaatttg ctccggcgtc gaatgacgcg catcagcaac cagcgtgata aagcgtttat
     4501 agccattctc aatgcttaat tgcatcatct gctgcgcttc cggcggcagt gccctggtga
     4561 tagaaacatc cgccagcggt gaagttgaga caccatcagt atgaacacca atcgaatcca
     4621 gactattttc tacggtggtg atcacgccga agataccgat agaaccggtc agggtgctgg
     4681 ggttagccac aatgtaatta gctggcgtgg aaatccagta accaccagat gccgccatgc
     4741 cgcccatcga tacaaccaca ggcttacccg ctgcccgggc tgctgccagt tcagcgcgaa
     4801 tcacttcaga cgcggtaacg ctgccgcctg ggctattaac acgcaggaca atcgctttca
     4861 ctttcgggtc aaggcgagcg tcgcggattt gtgccgcagt ggtatcaccg ccaacattcc
     4921 cctgagtttc ctcgccatcc ataattgcgc cattagcgaa gacgacaccg atgctgtcac
     4981 cggtatctgc cggcgttttc aatgcgtaat cgtaataact gatggcgcga taatttttat
     5041 cagtcttact ccagccgaac tctttggtca gagctttttc gatttcggca ctcgatgcca
     5101 gtgcatcgac cagcttgttt tccagtgcat atttcgcggt atcgccaccg gttttggtta
     5161 aaccctcaag caacccttgc gcgctaggga atacctgctg agcagggatc tgccggttag
     5221 cggcaacagt attcagatag ttttgccaca gctcaccaat ccagcggctg tcagcttcgc
     5281 gggctgccgg tgacatatca tcacgaataa acggttcaac ggcagattta tacgtaccca
     5341 cgcggaacac atgggtggaa actttcagct tatccagcaa cgatttgtag tacagaccgt
     5401 tggtagcaaa accgtgcaga tcaaccacgc cttgcggtga cagccaaatt ttattggcga
     5461 aactggcgag ataatattgc ccctggctgt agttctcgcc aacggcataa accggtttcc
     5521 cgctgtcacg aaactctttc agggctttgc cgatgtactg catagacggc tggtcgccgc
     5581 ctgcgaagtt tttcagatcc atcacgatac cggtgatatt gtggtcgtcc ttcgcctggc
     5641 gaatggtgtt gacgatatca aacagtgagt tttcctgcag acgatcggaa ctggcaccaa
     5701 gcagctggcg gcttaattta ctaaaccgct gagaactgtc gggtttatcg acgatcacac
     5761 cggaaatgtc cagcagcagt gcgccacgac tggccgtttc tttcgaatca ccaccactga
     5821 cctgcatcca gatccccaca ccaaccagta cgaggaaaat aaagaacagg ttaagtacca
     5881 tttcacggac gaaattcagc agacgccacg tccatttaaa aaatccggca ataaatcgcc
     5941 aaagggttcg catgtattct cccaacttaa ggtcacacct gtcacaggcg caatagatgt
     6001 ggttatcgta atgacccaac cgacacttgt cagcaggaat tgcggactgt gctgtaacaa
     6061 aatccactct cgtgttaatt ttgtgaataa atatcacgac aggagttaat caaatggatg
     6121 cactcgaact attgatcaat cgccgtagcg cctcccgcct ggctgaaccc gcgccaacgg
     6181 gtgaacaact gcaaaacatc ctgcgtgcgg gtatgcgtgc gccggaccat aagtccatgc
     6241 aaccgtggca tttttttgtg attgaagggg aagggcgcga gcgtttcagc gccgtactgg
     6301 aacagggggc gattgctgcc ggtagtgatg acaaagctat cgacaaagcc cgtaatgcgc
     6361 cgttccgcgc accgctcatc atcacggtgg tggcgaaatg cgaagaaaat cataaagtcc
     6421 cgcgatggga acaggaaatg tctgccggat gcgcggtcat ggcgatgcaa atggcagccg
     6481 ttgcccaggg atttggcggc atctggcgca gtggcgcatt aactgaaagt ccggtagtgc
     6541 gtgaagcatt cggttgccgt gagcaggata aaattgtcgg ttttctctac ctcggcacgc
     6601 cgcagttgaa agcatctacg tcgattaacg tcccggaccc gacgccgttt gtaacttatt
     6661 tctgataatt gtcgcgaaac tgtctggatt gtgagcaaag gcgcaggaat tcagacactc
     6721 tcacttatca cttcacggaa tgagggttac catacccgga ttgcattgac aggagatgtc
     6781 catgagcgag aactcgattc gtttgaccca atacagccac ggagctggtt gcggctgtaa
     6841 aatttcccca aaagtgttgg aaaccatcct gcacagtgag caggcgaagt ttgttgatcc
     6901 gaatttgctt gtgggtaatg agacccgcga cgatgcggcg gtgtacgatc tgggcaatgg
     6961 caccagcgtt atcagtacca ccgacttctt tatgccgatc gttgataatc ctttcgattt
     7021 tggccgcatt gcggcgacta acgccatcag cgatatcttc gcgatggggg gcaaaccgat
     7081 tatggcgatt gcgatcctcg gctggccgat taacaaactt tccccggaaa ttgcccgcga
     7141 agtaaccgaa ggtggacgct atgcatgccg tcaggcgggt attgcgctgg ctggcggtca
     7201 ctccatcgat gcgccggagc cgatttttgg tctggcggta acggggatcg taccgaccga
     7261 gcgggtgaag aaaaacagca ccgcacaagc cggatgcaaa ctgttcctga cgaaaccgct
     7321 ggggatcggc gttcttacca cggctgagaa aaaatcactg ctgaaaccag aacatcaggg
     7381 actagcgacg gaagtgatgt gccggatgaa catcgcaggc gcgtcctttg ccaacatcga
     7441 aggcgtaaaa gcgatgaccg acgttacggg ctttggtctg ctgggccatt tgagcgaaat
     7501 gtgtcagggc gcaggtgtgc aggcgcgcgt tgactatgac gcgatcccaa aattgccggg
     7561 ggttgaagag tacattaagt tgggcgcagt gcctggcggc accgaacgta actttgccag
     7621 ctacggtcat ctgatgggtg aaatgccgcg tgaagtgcgc gatttgctgt gcgatccgca
     7681 aacttctggc ggtttgctgc tggcggtcat gccggaagca gaaaatgagg tcaaagctac
     7741 agccgccgag tttggcattg aactgacggc aattggcgaa ctggtgccag cgcgcggcgg
     7801 tcgtgccatg gttgagattc gttaattcaa tgcggttgtt tattgccgaa aaaccgagtc
     7861 tggcgcgcgc cattgctgat gtcctgccca aaccgcaccg gaaaggcgat ggctttatcg
     7921 agtgcggtaa tggtcaggtg gtgacctggt gtatcggtca cctgcttgag caggcgcagc
     7981 cagacgccta cgacagccgc tatgcgcgct ggaatcttgc ggatttgccg attgtcccgg
     8041 aaaagtggca attacagccc cgaccctccg tgaccaaaca acttaacgtc atcaaacgct
     8101 tcctgcatga agccagcgaa atcgttcacg ccggggaccc ggatcgtgaa gggcaactgc
     8161 tggtggatga agtgctggac tatctgcaac tggcaccgga aaagcgccag caggtgcagc
     8221 gttgcttgat aaacgacctg aacccgcagg cggttgagcg ggcgatcgac cgtcttcggt
     8281 ccaacagtga gtttgtgcca ttgtgcgttt ctgcgctggc gcgagcgcgt gccgactggc
     8341 tgtacggcat caatatgacc cgtgcgtata ccattctcgg tcgcaatgcc ggttatcagg
     8401 gcgtactttc cgtgggacgc gtgcagacac ccgtgctcgg gctggtggtg cgccgcgatg
     8461 aagagattga aaacttcgtg gcgaaagact tctttgaagt caaagcacat atcgtgacac
     8521 ctgccgatga gcggtttacc gctatctggc aaccgagcga agcgtgtgaa ccgtaccagg
     8581 atgaagaagg gcgcttgtta catcgtccac tggcggagca tgtggttaac cgcattagtg
     8641 gtcaaccagc aattgtcacc agctataacg ataaacggga atcagaatcc gcgccgctgc
     8701 ctttttcgct ttcggcgttg cagattgaag cggcaaaacg ctttggtctg agcgcgcaga
     8761 acgtgcttga tatctgccag aagctgtacg aaacgcacaa gctaatcact tatccgcgtt
     8821 ccgattgtcg ctatttgcca gaagaacatt ttgccggacg ccacgcggtg atgaatgcca
     8881 tcagcgttca tgcaccagat ctgttgccgc aaccagtggt agatccagat atacgcaacc
     8941 gctgttggga tgacaaaaag gtcgatgcac accacgccat catcccgacc gcacggagtt
     9001 ctgcgatcaa cctgacggag aacgaagcga aggtctataa cctgattgcc cgtcagtact
     9061 tgatgcagtt ctgcccggat gcggtgttcc gcaagtgtgt tatcgaactg gacattgcca
     9121 aaggcaaatt tgtcgctaaa gcgcgttttc ttgctgaagc aggctggcgc acgctgttag
     9181 gcagcaaaga gcgcgatgaa gaaaacgacg gtacgccatt gcctgtggtg gcgaaaggcg
     9241 atgagttgct gtgtgaaaaa ggtgaagtgg tagagcggca aacccagccg ccgcgccatt
     9301 ttaccgatgc aacactgctt tcggcgatga ccgggatcgc gcgctttgtg caggacaaag
     9361 atctgaaaaa gatccttcgt gcgaccgatg gtctggggac agaagcaacc cgtgccggga
     9421 ttattgaact gctgttcaag cgtggttttc tgaccaaaaa agggcgctat atccactcta
     9481 ccgacgccgg aaaagcgtta ttccattcgc tgccagaaat ggcgacgcga ccggacatga
     9541 ccgcgcactg ggaatcggtg ctgacgcaaa tcagcgaaaa gcagtgtcgc tatcaggact
     9601 ttatgcagcc gctggtgggg acgctatatc agcttattga tcaagccaaa cgtacgccgg
     9661 tgcggcagtt tcgcggcatt gtggctccgg gcagtggtgg cagtgctgat aagaaaaagg
     9721 ctgcaccgcg taaacgtagt gcgaaaaaaa gtccgccagc agatgaagtc ggaagcgggg
     9781 cgatagcgta agcgagtgaa tctttcgtgc tattcgagtc atattctgaa atatccagcg
     9841 aatcaagaaa attcgttgga tatttttttg catggataaa attatcgcct ctaaagtatg
     9901 taataacagg gaatgtgatg aaaaaagttt tattacaaaa ccatcctggg agcgagaagt
     9961 attcttttaa tggctgggaa atatttaata gtaattttga acggatgatt aaagaaaata
    10021 aggccatgct gctttgtaag tgggggtttt atttaacatg tgttgtcgct gtaatgtttg
    10081 tgttcgcagc gataacatcc aacggtttga atgaaagagg cctgattacc gcgggatgct
    10141 cttttcttta tctattaatt atgatggggc ttattgttcg ggccggtttt aaagcaaaaa
    10201 aagaacaact gcattattat caggctaaag gtattgagcc gctcagtatc gagaagttac
    10261 aggcgctaca attgatcaca ccttatcgat tctatcataa gcaatggtct gaaacgctgg
    10321 agttctggcc gcgaaagcct gaacctggca aagatacctt ccaatatcat
//
LOCUS       DAJVUY010000148        10320 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.148, whole genome shotgun sequence.
ACCESSION   DAJVUY010000148 DAJVUY010000000
VERSION     DAJVUY010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10320
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.148"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            121..987
                     /gene="folD"
                     /locus_tag="OQQ72_003351"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="OQQ72_003351"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HCS2012968.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ72_003352"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ72_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HCS2012969.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="OQQ72_003353"
     CDS             1309..1830
                     /locus_tag="OQQ72_003353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS2012970.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQMIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ72_003354"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ72_003354"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCS2012971.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ72_003355"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ72_003355"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HCS2012972.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ72_003356"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ72_003356"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HCS2012973.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="OQQ72_003357"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="OQQ72_003357"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCS2012974.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="OQQ72_003358"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="OQQ72_003358"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCS2012975.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YMGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7363)
                     /locus_tag="OQQ72_003359"
                     /pseudo
     CDS             complement(6472..7363)
                     /locus_tag="OQQ72_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
     gene            complement(7360..8175)
                     /locus_tag="OQQ72_003360"
     CDS             complement(7360..8175)
                     /locus_tag="OQQ72_003360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HCS2012976.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWRHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP"
     gene            complement(8186..9445)
                     /locus_tag="OQQ72_003361"
     CDS             complement(8186..9445)
                     /locus_tag="OQQ72_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HCS2012977.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGGCLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
     gene            complement(9455..10320)
                     /gene="fdrA"
                     /locus_tag="OQQ72_003362"
                     /pseudo
     CDS             complement(9455..10320)
                     /gene="fdrA"
                     /locus_tag="OQQ72_003362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415051.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT         2271 a         2934 c         2771 g         2344 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctt
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacatccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggcttattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcagatgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaatccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatatgggc gtgatggcga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccga tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgaatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt ccccagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgcagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gcctcatccc ctggctttcc gccaccagca
     7141 catccagcgg atacggttct acctctttcc acgccagatt ctgtaacgcc agcagcccca
     7201 cctgcggccc gttgccgtga acaatcgcca gccgataaga acgggccagg cgtgccagcg
     7261 cgggtacagc actggcgata ttgcgatatt gattttccgc cgtcagcgcc tcaccgcgct
     7321 ggagtaaggc gttgccccca agagctacaa ccagtgtttt catggttttc cttgtaataa
     7381 ttgttggcca agccagaacc ccagcagcgt atctgcccct gacgtatgcc ccagcgccag
     7441 cagcgaatca atcgcaacag cggtacgttt cgggcaactc agagcatgga caaagtgcag
     7501 gagtggcgag gcgaaatatc cttgcgcggc ataacgtaaa taactgacgc tcaccgctgt
     7561 ggtaacgagt tgaagattgt cggaacaggc aaaaaacggg cgaccggcgc gcgcatctaa
     7621 agcgccataa taccaagccg ccagcagcat tccgctcaac gtgtcatcat gacttggcgt
     7681 taatccgggg cctttaccca gccagtgccg ccagtcggtc ttaacgccat tgagcgcggc
     7741 ctgaaaacag tgacgaaact ggcgtaattc agcggtcagc ggatcgcttg ccgccatcgc
     7801 cagtggtccg aaaagtccgg tttcctccgc gcgttgcatc catgcagctg caagcggttg
     7861 aggatgcgaa ggcggcgtaa tacgcagcaa acaataacgc tgtggctgtt taaccgtgaa
     7921 acgcccgagg cgaatccctt gagccacaac ctgtggtcgt tcattgccgc ataatccacc
     7981 gcataacgca tcgaattgcg cgcggcgaag cacccatcct ccggggccga aaccactacc
     8041 ctgacgatgc agcgttaaca gttcgccgct ttccgtcatc aggttaatcg cccgccgcca
     8101 cactcccgct aaccgccagg actggcgata attcggtgcg ctactgctgg caagcagagg
     8161 atggatgatc gtcattgcgc gttcctcaac caatccccat gctttcagcc agtgcttcca
     8221 gcgcctgttc aaagcacgcc agcggtgccc gcacggtgcc tgcgccaatc tgcccgatcc
     8281 ccgcctcttt atgggcgata ccggtattga tgagtggcgt aatgccggtt tctaccacgc
     8341 gacgaatatc cagccccagg cacgcgccct gaaaatccca gcctgggatc tgcaactgca
     8401 tattgcgttc aaggtaaatt tccgccatct cttcagatac cgccctggcc gcttccatgc
     8461 cacccgcacc gacaaagcgc gttacgccag gcgctgcgat cattgccgca cctccgatac
     8521 caaaggtttc ggtaatcgcg ctatcgccca tatccgggtt cgcctgctcc tgcgagaagc
     8581 cggtgaaaaa cagaccttgc ggagtgttta caggcgcagt aaaccagcgt tcacccagcc
     8641 cgcttacccg aatcccgaac atattgccgt tgcgggtcat agccgtaacg atgctgcctg
     8701 cgcggatcat cgcgccagca tccatcgccg ccttgcagta ggccatcgcg aggttgagga
     8761 agaactgatc ggtcacgctg aggaaatcga tcacttccgc aatgtgctgt ttatcatgat
     8821 cgaggcgagc aatttgtggg gccagcgtac gcattaacag tgctgaggaa gcaatattgc
     8881 gttgatggaa ctcatcgccc atcgtaatgc cctgcgccat catcgccgtg agatcgatac
     8941 cgcgctccat gcgccccagc gccgcgctta atactggcat taacacatcg cgcatccagc
     9001 gatggcgagt caggacatct tcgccgtaag cgccaaaacg catcactttg ccgatacctt
     9061 cgttgaggtt gcagtacgcc cggttgccgt cggtcacgtt ctcgaccacc agcatcggca
     9121 tactggcaga agtaatgccg cccattggcc cgacggcatt cacatggtga caaggaatga
     9181 agttcacttc cccctgctcc agcatcgcca gtgcctgcgc ttcatctttc gcccagcctt
     9241 cgaacagaca tccgcccacg cacgcccctt tcatgggtcc ggtcatctcc tgccagcgca
     9301 ttggcggccc ggcgtgaagc agtgttttgc cctcgtttag ttcgctgata agtgaaaaag
     9361 ccggttgcac atccagccag tgtggacgag cacgacgaat ttgttcgata accgcagcat
     9421 tggcttgcgc cactgatgta aacatgggaa ccccttattg caaacgttct aataaacgag
     9481 ccagtttttt attgccgccg gcgactggcg accattggta atgcacaacc ggtttgctgg
     9541 cgctttgtag ctccagcgca aagctgcgta atccgatgtt aatcacggcg acgttttcca
     9601 gtaatgacgg tgtatgttgc tgtgcggcag gcgagagcgg ataaattaac gctgccgcca
     9661 gcaaggtggc ttccggcagc gaactcacta ccgcgatccc cgcatcttcc agcgtggcga
     9721 tttgctgcga gcggcattgc gggtcacgtt cagtgcctgt caccgtggca atggcataca
     9781 gtggttgatt atctgaacgc gcggcacagg ctttttgcta ggcgcttacc agcgaggcgg
     9841 caggatcggc agtcgcaccg aagccaatca cgacatcaag tagcaatacg cgcacttgtg
     9901 gtttagcgcc gagatcggca attaactggt tgcgtaaggc tgggtcgatc atcggatggg
     9961 gacgcccgac ggtgtagaaa tcatcgccga ggtcaataat ctggtgacca tcggcgtcga
    10021 gcatcatgcc gtgatgatgg gtatcgtcgg cttccacgcc aaggtgtcca gcaagtaatc
    10081 ccgccgcttc ggcagccagc gtaccgccgg tatacaaacc gcaaataaat ccgctgctga
    10141 caggcgctat tgcgttacgt cgcgccgtga cgcgtgaaag caggcaagcc aggcgtgcgg
    10201 cctcatccag cgaggaggca aaccagacat tctcgtcgcg ggccaccgcc ggggtataac
    10261 ctaaaaacag cgccaccatc ggtttgccgg ttgctttcat ggcattaaca attttcagac
//
LOCUS       DAJVUY010000149        10146 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.149, whole genome shotgun sequence.
ACCESSION   DAJVUY010000149 DAJVUY010000000
VERSION     DAJVUY010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.149"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..236
                     /locus_tag="OQQ72_003363"
     CDS             <1..236
                     /locus_tag="OQQ72_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS2012978.1"
                     /translation="TLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLV
                     YEKTYTAELSSIAGTPIEAGPFDTVVLFKINYN"
     gene            388..1434
                     /locus_tag="OQQ72_003364"
     CDS             388..1434
                     /locus_tag="OQQ72_003364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HCS2012979.1"
                     /translation="MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRG
                     ITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAILLVTLLSSAIVGWLL
                     VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTCM
                     MLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLPSGTMLIPMLAGAVLQ
                     SGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGM
                     AWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPA
                     IARFISTYAPKRSA"
     gene            complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ72_003365"
     CDS             complement(1431..2222)
                     /gene="nei"
                     /locus_tag="OQQ72_003365"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HCS2012980.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ72_003366"
     CDS             complement(2258..2992)
                     /gene="pxpA"
                     /locus_tag="OQQ72_003366"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HCS2012981.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQAAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ72_003367"
     CDS             complement(2982..3914)
                     /gene="pxpC"
                     /locus_tag="OQQ72_003367"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HCS2012982.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ72_003368"
     CDS             complement(3908..4564)
                     /gene="pxpB"
                     /locus_tag="OQQ72_003368"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HCS2012983.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV
                     EAIPGMNNITVILRNPESLALDAIELLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ72_003369"
     CDS             complement(4587..5330)
                     /gene="ybgI"
                     /locus_tag="OQQ72_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HCS2012984.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ72_003370"
     CDS             5601..7082
                     /gene="dtpD"
                     /locus_tag="OQQ72_003370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HCS2012985.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGSFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ72_003371"
     CDS             complement(7124..8542)
                     /gene="phrB"
                     /locus_tag="OQQ72_003371"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HCS2012986.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(8539..9048)
                     /locus_tag="OQQ72_003372"
     CDS             complement(8539..9048)
                     /locus_tag="OQQ72_003372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HCS2012987.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
     gene            complement(9333..9707)
                     /locus_tag="OQQ72_003373"
     CDS             complement(9333..9707)
                     /locus_tag="OQQ72_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2012988.1"
                     /translation="MFTKLSIAILLAFSAYVHAETSAPIFFEDVGSIDSWFSIKYQKY
                     ENVKDEQYPEILIYYGVKGSGINRVDGWFFSCAKAGRTCSLIFMADFGESRYFKPAKI
                     AMNKNNLIIRTSDVEIAFKITK"
     gene            complement(9692..>10146)
                     /locus_tag="OQQ72_003374"
     CDS             complement(9692..>10146)
                     /locus_tag="OQQ72_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS2012989.1"
                     /translation="LGLIDKPAPVFNRDLNSDPYYLAVNNCYSYALNRYGNPGSRIFG
                     GGGLQPGELSGKEFSKLTCGSIFEASKNDGAKDLDNGSCPSGYHKAQLFIRPHNFIGM
                     GGDYHWYRQDANGEWSDKQGVGAIRFRGKDPFPPIDYPEKCGTIFLPN"
BASE COUNT         2366 a         2754 c         2437 g         2589 t
ORIGIN      
        1 aaacgttggt tgaagaagat aaagcattgt tgattggtaa tggtctgaag ctacgtttgc
       61 tggatgaaaa cgcctcgcct tataccttca ataaatatgc tgaatacgcc gatttcacca
      121 gcgacatgtt ggtctacgaa aaaacctata cagctgaact ttcgtccatt gcaggtaccc
      181 ccatcgaggc tgggcccttc gatacagtgg tgctttttaa aattaactat aactgatttg
      241 ccatgatgcc ctttgcagcc ggaaagggca tctctttcag aaaattgctg attttcctct
      301 tttccttgat tactgttatt ttttcctggc ccggctttct ttatgctgta tcgatacacc
      361 aaagagaaaa taatgaggga gcgaaggatg ccagttttgc agtggggaat gttatgtgtg
      421 ctatcacttc tcctttctat tggtttcctc gcggtacatc tcccggcggc gctattactt
      481 gggccgatga tcgccgggat catcttcagt atgcgcggaa ttactctgca acttccccgc
      541 tccgcttttc tcgccgcgca ggccattctt ggctgcatga ttgcgcaaaa cctcactggt
      601 tcgattctca ccacgctggc cgccaactgg ccgatcgtgc ttgctatttt actggtgacg
      661 ctgctttcca gcgccatcgt gggttggtta ttggtgcgct atagctcact gcctggaaat
      721 accggtgcct ggggttcttc tccaggcggc gcagcggcaa tggtcgctat ggcgcaagat
      781 tacggcgcag atattcgcct ggtggcgttt atgcaatatc tgcgagtgct gttcgtcgcg
      841 ggggccgctg ttctggtcac ctgcatgatg ctgggtgata acgctgaagc ggttaaccag
      901 caaatcgtct ggttcccgcc agtgagcatt aatctcctgc ttacgatttt gctcgcagtc
      961 gttgccggta cggcgggatg catgctgcgt cttccttccg gcacgatgct catcccgatg
     1021 ctggcgggcg cagtgctcca gtctggtcag ctcatcacca tcgaactacc ggaatggctg
     1081 ctggcgatgg cgtatatggc aattggctgg cggattggtc ttggtttcga taaacaaatc
     1141 ttactgcggg cactacgccc actaccgcaa atcctgctgt cgatttttgc tctgctggct
     1201 atttgtgcag gtatggcgtg gggactgacc cggtttatgc atattgattt tatgactgcc
     1261 tacctcgcca ccagtcccga cgggcttgat accgtggcgg tcatcgccgc agggagcaat
     1321 gccgatatgg cgcttattat ggcgatgcaa accctgcgcc tgttcagtat tttgctgacg
     1381 gggccagcca ttgcgcggtt tatttcaacc tatgcgccga agcggtcggc ctagtgctgg
     1441 cagcctggac accagtaaaa cgggcgcgag gacaacgtgg ttttctcaat gatgccgcca
     1501 cagcgttcgc acagttcgcc atcacgatga aaaaccttaa agcgaaacag cgccccatga
     1561 tgcttattct catccacctg cccccgcgta gcgtaagaaa accgaggaat ctccagtaac
     1621 gcgtgtgcga gtgcatccag ttgcgccgca ttgagatctt tcgctttatg atttccagtc
     1681 aacccaacct gccagaggat ctccacccgc aaataattgc caagcccagc cagaaacgcc
     1741 tgatcgagca gtaatcctgc aaactgacgg ttacgaaagc gcggtgacaa taaccgttcc
     1801 tttaccacct ccggcgtcag attcggatcc agcacatcgg gaccaacgcg ttgtaaaaac
     1861 ggatgcgtgg tcagttgttc cggcctcaac atctcaatat ccgaggcgct ataaagcaga
     1921 atggttttgt cagccgtttg cagttttacc cgcaatactc gcgtggtctg cggctcttcg
     1981 ccggtatcaa ccacgcgcca gacgccgtaa agctgattat ggctgtagag cgttaagtcg
     2041 ttggaaaaat gagttaacaa cgccttacca cgcgttccca catgggtaac gtgttgaccg
     2101 ataagttgtg attgataagt ttttaactgc gggaaggcaa accagacatc agttagtggt
     2161 ttgcctttga tcgccgcctc caggttatcc gctgcacggc ggatctccgg gccttcaggc
     2221 atggtgatat ccttttttca ttctttatta atcggggtta tgctgcgaca acaatctcct
     2281 tttcggcaaa tgtagagcgt agtcggcggg cgaacgccag tgcgtgctcg ccgtcgccat
     2341 gcaggcagac tgtttgcgcc gtgaccgttg cccattcgcc ggtgatactt ttgactctgc
     2401 cgtgttgcac catctctagc gtttgcgcca gcgcctgttc ttcgttttca atcaacgcgc
     2461 ctggctgact tcgcggcacc agcgagccgt cagcctgata accgcgatcg gcaaacactt
     2521 cctcgcgcgt tgtcaggcca tattgcttgc ctgcacgaat cagctcgctt cctgccagcc
     2581 caacgagaac caatgctgga tcgcaagcgt ataccgctct ggcgatggcg tctgccagtt
     2641 gtgcttcttt cgccgcctgg ttgtacaaca tgccgtgcgg tttgacatga cgcattacgc
     2701 cgccttgcgc acgggcaatc gttgccagcg cgccaatttg atacagcgtc tgggcgtaaa
     2761 cggtttctgg cggcagctgc atggcgctgc gaccaaaatt ttccctgtcg ggaaaactcg
     2821 ggtgagcgcc aatcgcgaca ccatttttta ttgcttcacg cacgcaagcc tgcatggttt
     2881 gggcatcgcc tgcatgaaat ccacaagcaa tattggcaga ggaaaccagc gttaatagct
     2941 ctgcgtcgct ggcgcagcct tcgcccagat cggcgttcag gtcaattttc attgtgtagc
     3001 cgccacgcta attgttcgaa ataacgttgt tgatcttgcc gcgctttcag tgcctcttcc
     3061 agtgaacact ggacaaaatg aatcggctga ccgagcggaa tttgcgccag atggtacata
     3121 tcagcctcaa tgatacaggc aatacgcggg taaccaccgg tggtctgtgc gtcgttcatc
     3181 aacacaatcg gctgcccgtt atgcggcacc tgcaccacac ccggtaacaa accgtgagat
     3241 aacagttcgc gatcggtggt gcgttttaaa atttgcccct gtaagcgata gcccatgcgg
     3301 ttactttgcg ggctaagctg ccagggcgaa cgccagaatg catcctgcga ggcgcgatcg
     3361 aactcatgat attccggccc cggcaaggcg cgaatgcggt tgccccacag cagctgttta
     3421 acgccctgcg cttccataaa atcacgcttc gatttgccaa tcgggagtcg gtcaccatcc
     3481 ttcagtaaac ggccttccag cccgccaatc cccacgttga gatcggtgct gcatgacccc
     3541 attaccggcg gaacatcaat accacccgcg accgccagat aactgcgcat gccgtgctgc
     3601 gggcgtttaa gcgttaaacg ctggcctgct ttcatcggca agcgccagcc ggtccagacg
     3661 gcgttatcat ccagccgcgc ttcgcaaccg gcacccgtca gagcaaacca cccatcagtt
     3721 tcgaactcaa ccgttaactg accgagcgtg atctccagcg cgggggcatt ggcgtcatta
     3781 cccaccagca ggttagcaat gcgtaacgca ggcatatcca gtgcgccgca gtggctgata
     3841 cccgactggc gaaaaccgtg acgaccgcca tcctgcacag tggtatacat gcccgcacga
     3901 ataatcttca gcatactccc tccttctgcg gtacaaagcg cacgctgtct cccggacgta
     3961 ataagatggg ttcgtcacgc gccggatcaa acaggctgag tgaggtatga ccaatcaact
     4021 gccagccacc cggcgttgcc agcggataaa caccagtctg cggcccgccg atcccgacag
     4081 aacctgccgg aacgagcaag cgcggttcag cgcgccgtgg cgtgtgtagt tgttccggca
     4141 aactcccgag atacgggaag cccggttgaa aacctaaaaa ccagaccacg tattccacgg
     4201 aggagtgcaa ttcaacaacc tgtttttcgc tcaacccgca atgcgccgcg accaccgcca
     4261 aatccggtcc gcctgcacca ccgtaaacca ccggaatttc aataaagcga gactcaggtt
     4321 ccagggcctc gctctcctcc caccagcgtt gcaaaagctc tatggcatcc agcgccagcg
     4381 actcaggatt acgcaaaatc accgtgatat tgttcatgcc gggaatggct tcaaccacat
     4441 tcggcatatc caccagacgc tgcgccagtc gccagatccg tttctggcta gccagcgtca
     4501 ccggcggttc cagttccagc actaccgccg tttcacctat cagataacaa cgcgctcgtt
     4561 gcactttcga tccctctgat tattcgttat gcaggattag gaatatcaat aaaggtcaca
     4621 tcaagatcgg tattttcatt cagccactcg ctcaatgcgc gaataccacc acgttcagtg
     4681 gcatggtgac ctgcagcata aaaatgcaat ccctgctcgc gggctgaatg aatggtctgt
     4741 tcagaaactt cgccagtaat aaaagcatcc acgccaaaac gcgcggcgct atcgataaaa
     4801 ctttgcccgc cgcccgtgca ccaggcgacg cgctggacca cctcaggtcc ggtatcgcca
     4861 caccataacg gcttacgtcc cagacgcgct tcaatccagg aggctagttc cagtcccggc
     4921 acaggcatgg tcagctctcc ccacggcacc aacggctcaa tttcgcccat gaccgtgatc
     4981 cccagtaacg ccgccagctg tgcgttattg cccagctcag gatgtgcgtc aagcggcaaa
     5041 tgccagccat acaggttgat atcattcgcc agcaacgttt ttaaacggtt acgcttcatt
     5101 ccgcgaatga ccggagactc tcctttccag aagtagccat gatgcacaat gaccgcatcc
     5161 gcgcccagac gcactgcctc atcgagcaaa gcctggctgg cggtgacacc ggtaacaatt
     5221 ttttgcaccg tctctttgcc ttccacctgc aaaccattcg gcgcgtaatc actaatcgcc
     5281 gcgctgttca gtttttcgtt aatcagttgt tccagttcgg tgtttttcat cttcgcgcct
     5341 tccgtattct gatagctaca ccgttaacat agcgttacct cgcctgttcg tcgatagcca
     5401 atcttttgac atattaataa acaaacccga cgccaaaaga cgcaaattgt ttatatcatc
     5461 acgcttcagc taatgtatat ttatgcaatc agacagcata ttgcataaat aatcagatct
     5521 gtatcaaagt tttaacttta aggaaacaca agcacgccgc gcaactatta cgtgacgttg
     5581 ccgtcaattg tggaattatt atgaataaac acgcatcaca gccgcgcgct atttactatg
     5641 tcgttgcgct gcaaatctgg gaatatttta gcttttacgg catgcgtgcc ctgctgattc
     5701 tctatctcac caatcaacta aaatacaacg atactcacgc ctacgagtta tttagcgcct
     5761 actgttcgct ggtgtatgtc acgccaatcc tcggtggctt tttggcggat aaagttctcg
     5821 gcaatcgcat ggcggtgatg ctgggggcgt tattgatggc gatcggtcat gtggtgttgg
     5881 gtgccagtga gatccatccg tcattcctct atctgtccct ggcgataatt gtttgtggct
     5941 atggtctgtt taaatccaat gtcagttgcc tgctcggcga gctgtatgag ccaaccgatc
     6001 cgcgtcgtga tggcagtttc tcgctgatgt atgcagcggg taacgtgggg tctattatcg
     6061 cacctattgc ctgtggctac gcccaggaag agtacagctg ggcgatgggc tttggcctgg
     6121 cggcggtggg tatgatcgcg ggtctggtca ttttcttatg tggcaatcgt catttcacac
     6181 atacccgcgg cgttaataaa aaagtactgc gtgcgacaaa ctttctcctg cctaactggg
     6241 gatggctgct ggttctgctg gtggcaacgc ctgcgctgat taccgtattg ttctggaaag
     6301 agtggtcggt atacgcctta attgtcgcga ctattattgg cctgggtgta ctggcaaaaa
     6361 tttatcgcaa agcagaaaac cagaaacagc gtaaggagct ggggctgatt gtgacgctca
     6421 ccttcttcag tatgttgttc tgggccttcg cacaacaggg cggcagctcg attagccttt
     6481 atatcgaccg cttcgttaac cgcgatatgt ttggttatac cgttccgact gctatgttcc
     6541 agtcgattaa tgccttcgca gttatgctgt gcggtgtgtt cctggcgtgg gtggttaaag
     6601 aaagcgtcgc aggtaatcgt accgtgcgca tctggggaaa atttgctctt ggtctcggcc
     6661 tgatgagcgc cgggttctgc attctgacct taagcgcccg ctggtccgca atgtatggtc
     6721 actcttctct gccactgatg gtattaggcc tggcggtgat gggctttgcg gaactgttta
     6781 tcgacccggt tgccatgtcg caaattacgc gcattgaaat ccccggtgtg accggcgtat
     6841 taaccggcat ttatatgctg ctttccggcg cgattgcgaa ctatctcgcg ggcgtgattg
     6901 ccgatcagac atcgcaggct tcgtttgatg cttccggggc gatcaactac tccatcaatg
     6961 catatattga agtatttgat caaattacct ggggcgcact ggcgtgtgta ggactggtac
     7021 tgatgatttg gctgtatcag gcgctgaaat tcagaaaccg cgcgctggcg ctggagtcat
     7081 aataggccag caccatacct gataaaacgc tcgctgcgtt ttatcaggct cctttcctcg
     7141 cttcttcgta cgctgccagc gttcgcagcc ttgcctcttt gtgatcaact atcggttgcg
     7201 gataatccag catcacacct gctttctgcg cccacttcca cggctcatgc accgctttcc
     7261 ctggtacatc gcgcagctcc ggtaaccatc gacgaataaa ctcgccctca cggtcaaatt
     7321 tctcgccctg ggttgtcggg ttgaaaatac gaaaatacgg cgctgcatcg gttccggttg
     7381 aagcggccca ctgccagcca ccgttattgg ctgccaaatc accatcaatc agctgcgaca
     7441 tgaaatatcg ctcgccttcg cgccagtcga tcaacaaatc tttcaccaga aaactggctg
     7501 taatcatccg tagccggtta tgcatccagc cagtgctgtt aagctgacgc atggcagcat
     7561 cgacaatcgg gtatcccgtt ttgccttcct gccaggcctg taaatgtgcg ggattgctct
     7621 gccactgcac acgatccgtc caggcaataa acggacaatg tttacacaac gaggggtaat
     7681 acgtcatcag atgacggtag aactcgcgcc agatcagctc actaagccag acactaccgg
     7741 ccccaccgtc cagcgcctgc ggctgttccg ccaacaagcg atgcaaacac tggcgaggcg
     7801 ataacccgcc cgttgccagg ctggcggaca aacgactggt gccttccact gccggaaaat
     7861 ctcgttgttg ctcatattct ccggcaccgt tctggcaaaa ctggcgtaat tgcgcaatcg
     7921 ccgctttttc ttccaccggg aaatgcgcag tatcgaaaga ctgacgagga taattcagcg
     7981 taatggatgg cgagggctct atcgatccgc tactacgaac ttttggcgca gcgacgcact
     8041 ccggcatccc ttcccgcagc cgtttcagcc aggcattctt aaaaggcgta aagactttgt
     8101 acatctcgtg attaccggtc atcaccgcgc caggcggcag gatcacgctg tcatcaaatc
     8161 cttcacacac cacgttacgc agcgctcttt caacttccac atcccgcgcc cgctcattca
     8221 cttcatactg atagttataa aacaggtggg taacgctgtt ttccgcgcac acctgtttaa
     8281 ctatttcgac actggcgaca aagtcatcca cttcacggaa caataaagga ataccttttt
     8341 ccgcaagcgc tatttgtagc ccattcagtt gagcattgat aagttcagcc tgacgcggcg
     8401 acatgttatg cgtcgcccac tggcgtggtg tagcgatata caacgccagc acgcgtgcag
     8461 acgaattgct gcaggcggca gccagtgcga gattatcgtg caaacgtaaa tcctggcgaa
     8521 accagaccag atgggtagtc ataaaactcc tgaatggcgc aagttaatca cacgcggcca
     8581 aagttcgaaa taacgctgcc ctgaaagcca ggcgtcagga taaagcgcca tatagtgttt
     8641 gatacgcatc agcggcgcaa gaagtggttg ctcgccacgg cgataactgt cgataagcgc
     8701 agccagctgc tggcgttctg tggaatcaat atgcgggcga aaataaccct gaacgtgcat
     8761 caaaacattg gtgtgatcgc gcgggttggc ggggtgagaa agcaaaacaa ctacgcgttg
     8821 gcggtactgg ttgtaatagt catccagatt ttgccactgg tgaatatcag ccacgaacgg
     8881 gccaagtttg cggtactccg gctgagaatg cgccagaaag acgagtttat agcggctgtg
     8941 ataatcgaga agcgccccgc gcgttaagcc atgttctttc agtcgatgta actcatgaag
     9001 ggcaaagata cggattaggg tgctgtcatc aaatcgttgt agattcatta ctgctcctga
     9061 acggtataaa ggagtaagtg tagacgatgg taaatgaatt ttatggggca gagtttttgc
     9121 ggggaagtat tttgttggta aaaatattat caacttcatc tgagcgagaa ttattctact
     9181 atttcccgag ctgcattcat tttttgtatt ttttattttt agaaaataac agttctcaaa
     9241 gcttaattac ctcactatta attgtatttc aaactaacaa tcgcactcca ttttctctct
     9301 ttaaaaaaca taaacactgt taaaacaaat atttatttcg ttatcttaaa tgctatttct
     9361 acatcactcg tccttataat caaattattc ttattcatag ctatttttgc aggtttaaaa
     9421 tagcggcttt caccaaagtc agccatgaaa attagactac aagttctccc agcctttgca
     9481 catgagaaaa accacccatc aactctattt attcctgaac ctttaacacc ataataaatc
     9541 agaatttctg ggtattgttc atccttcacg ttttcatatt tttggtattt aattgaaaac
     9601 caagagtcta tactgccaac atcttcaaaa aatattggag ctgatgtttc cgcatgaaca
     9661 tatgcagaaa atgctaacaa aatggcaata cttagtttgg taaaaatatc gttccacact
     9721 tttcaggata atctattggg gggaagggat cttttcctct aaatctaatt gctcccactc
     9781 cttgtttgtc agaccattcg ccatttgcat cctgacgata ccagtgataa tcccctccca
     9841 tgcctataaa attgtgagga cgaataaaca attgagcttt atggtaacca gatggacaac
     9901 tcccattatc taaatccttg gcaccatcat tttttgacgc ttcaaaaata ctaccgcaag
     9961 tgagtttaga aaactctttt ccagataatt ctccaggttg taatcctccg ccgccaaaaa
    10021 tcctactccc agggtttcca tacctattta gagcatatga ataacaatta tttacggcaa
    10081 gataatacgg atctgaattt aggtctcgat tgaatactgg agcaggttta tcaattaagc
    10141 ccagcg
//
LOCUS       DAJVUY010000150        10117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.150, whole genome shotgun sequence.
ACCESSION   DAJVUY010000150 DAJVUY010000000
VERSION     DAJVUY010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10117
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.150"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            205..357
                     /gene="hokA"
                     /locus_tag="OQQ72_003375"
     CDS             205..357
                     /gene="hokA"
                     /locus_tag="OQQ72_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HCS2012990.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ72_003376"
     CDS             complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ72_003376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HCS2012991.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1038..1328)
                     /locus_tag="OQQ72_003377"
     CDS             complement(1038..1328)
                     /locus_tag="OQQ72_003377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HCS2012992.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1761..2471
                     /locus_tag="OQQ72_003378"
     CDS             1761..2471
                     /locus_tag="OQQ72_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HCS2012993.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ72_003379"
     CDS             complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ72_003379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HCS2012994.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3599..4258)
                     /locus_tag="OQQ72_003380"
     CDS             complement(3599..4258)
                     /locus_tag="OQQ72_003380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HCS2012995.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTTPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ72_003381"
     CDS             4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ72_003381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin sulfoxide reductase"
                     /protein_id="HCS2012996.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDGETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVHVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQLGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRCSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTASGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDALARGIQD
                     GDTVRLWNARGQILAGVVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6713..7153)
                     /locus_tag="OQQ72_003382"
     CDS             complement(6713..7153)
                     /locus_tag="OQQ72_003382"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS2012997.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ72_003383"
     CDS             complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ72_003383"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HCS2012998.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7871..8569
                     /locus_tag="OQQ72_003384"
     CDS             7871..8569
                     /locus_tag="OQQ72_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS2012999.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8797..9999
                     /locus_tag="OQQ72_003385"
     CDS             8797..9999
                     /locus_tag="OQQ72_003385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013000.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2427 a         2435 c         2592 g         2663 t
ORIGIN      
        1 ttttttagga ttatatcaag gagaagaaac aaacttatta agctagaata gctacgggtg
       61 cttgagactg tttgtctcag gtattcaccg aaaggcagac agagaaaagc cccacctgac
      121 tataaatcaa agtgaggcta ccctatgcct gaacaccata aggttagcct cttactcgtt
      181 ggaaatcaac acagggggct gggaatgccg caaaaatacg gattactttc attaatagtg
      241 atttgtttca cgcttttatt tttcacctgg atggtaagag attcactgtg tgaattgcat
      301 attaaacagg ggcgttatga gctggcggca tttttagcct gcaatttaaa agagtaagag
      361 tcttcggcgg gaaattattc ccgcctttct tacggcgttg cgcattctca ttgcacccac
      421 atttattctt cacaaaaata ataatagatt ttactacgcg atcgattatt tatttcctga
      481 aaaaaaataa aaaaaatccc cgccaaatgg cagggatctt agattctgtg cttttaagca
      541 gagattacag gctggttacg ttaccagctg ccgggccttt agcgccgctt tcgatggtga
      601 aggacacttt ctgaccttcg tccagagatt tgtaaccatc gttctggata gcagagaagt
      661 gtacgaacac atctttagag ccatcgtcag gagtgatgaa gccgaagcct ttgtcagcgt
      721 tgaaccattt tacgatacca gtcattttac cggacatagt gtattacctt taataattaa
      781 gtgtgccttt cggcgatatg gcgtgcttta cagattttga agcgttaaag gaatgtgcac
      841 tacgaggggt atcaacgata actcttgaag ggacttgcct tactacactg ctttaatggt
      901 ctgtacgtca aaccgttgat gtgcattaag ccacgcattg gcgggtgatg caacaattat
      961 ttttcatatt tatgattaat cggttggaaa acggtcctgt catcaggacc gtaaacagca
     1021 ataaagtgga taaaagtcta ttccatcaac tgcttactta atgccgggtt ggcttgaatc
     1081 aaacgcatca attttagttc ggcacttgaa ggcttcacgc gtctggattc ccattccttt
     1141 accatggcga ctgatatgcc caaaacccgg gcgaaatcat cgatttttaa ccctgtccct
     1201 tttcgtaact gctcaatttc ggtacaggac gttgttctgt gcgtcagggt aattttctgc
     1261 gtttcatctt taaaaacaat ctgttccagg ctgctcaaca gctcatgcat tggatcttta
     1321 tattccattg aaaactcctc aaatcacact gcgggatcgt gaattgcatc gaagctcatt
     1381 aagaatagtc gggaaaagca gacacagcgg ggtgaagtca gggcatgctc tggctatgat
     1441 tcgattcagc cagtcattta gcgtgactta tagccaccta acgatctgat aaatgccgat
     1501 atatctctta ccactcctgt tttgtaaaga tttcgaaaat ctaaagttct gcgaaggcgt
     1561 aaatctcggg ctacaaaaaa gcaacggcaa tatcattttt taacaatgaa acaacaaatt
     1621 aaccttgttt cattttctcc atgattttac caggaagatt acgtagaaag ggtatcctgc
     1681 aagcctgtcc tggactatcc ttgtcacgtc agacacgcgt gtgtcgttgt gcgctttttt
     1741 tgggtgaaag gagtaagaaa atggcgacag gaaagtcctg ctctcgctgg tttgcgcctc
     1801 ttgcggcgtt attaatggta gttagcctga gtgggtgttt tgataaagaa ggcgatcagc
     1861 gtaaagcgtt tatcgacttc ctgcagaata cagtgatgcg tagcggtgaa cgtctaccaa
     1921 ccctgactgc cgatcagaaa aaacagtttg gtccttttgt ctctgattac gcgattctgt
     1981 atggttattc tcagcaggtg aatcaggcga tggattccgg tctgcgcccg gtcgtagaca
     2041 gcgttaacgc aattcgcgta ccgcaggatt acgttacgca aagcggtccg ctgcgtgaaa
     2101 tgaacggttc gctgggtgtg ctggcgcaac aactgcaaaa tgcgaagttg caggccgatg
     2161 ctgcgcactc tgcgctaaaa cagaccgatg atttgaaacc ggtctttgat caggcattca
     2221 ccaaagtggt aacgacgcca gctgatgcat tgcaaccgtt gattccggtt gcacaaactt
     2281 tcacgcaaca actggtgatg gttggagact acattgctca acaaggtact caggtgagct
     2341 ttgtagcaaa tggtatccag ttcccgactt cgcagcaggc aagtgaatat aacaaactga
     2401 ttgcgccgtt accggcacaa catcaggcgt ttaatcaggc ctggactaca gcagttactg
     2461 caacccaata aagagtaaaa gcccgagcga ttatcgggct ttacttcacg cagtcgcggc
     2521 ttagtccgcg acgtgcggat tcacacagtt cttctcaacc tttccttgta acgcatcaat
     2581 caaattatcc acggcacagg cggccatgcc ataacgcgtc tcatgggtgg cagatccaat
     2641 atgcggtact gcgacgacgt tggccattga gagcaacggc gaatctacgg acagtggctc
     2701 ttgttcgaag acatccagcc cggcggcgtg aatttcgcct ttctgcaatg ctgcgatcag
     2761 tgcattttcg tcaaccaccg ggccacgtcc ggcattaatg aaaatggcgg agggtttcat
     2821 tttggcgaat tgttctgcgc caaacagatg atgcgtctca tcagttaacg gcaggatcag
     2881 gcaaacgaaa tctgactctt gtaacagagt atccaaatcg cagtagcggg cgttgaagcg
     2941 ttcttctgct tctttatggt ggcggcgcgc gttatagagg atgggcatgt tgaagccaaa
     3001 gtgcgcacgt tgtgccagcg ccatgccgat ccgtcccatc ccgacaatgc ccagtgtttt
     3061 atggtgaacg tcagtgccgt accagtccgg gcctatgctc gcggtccatt cgcctgcttt
     3121 tacccgttct gctacctcca caacccgacg agcggtagac aacaccagcg ccatcagcgt
     3181 atcggcgacg gtttctgtta atacggttgg cgtgtgcatc agcagaattt ttcgggcggt
     3241 aagcgcatcg acatcaaaat tgtcatagcc gacggagatc gttgatgtgg cacgcagttt
     3301 cggcattttt tccagcaatg cggcatctac attctcgttt gaacccagta aaccttcagc
     3361 ttcggcaaaa attgctgcat tttgttcgac ggtttgtggg ctgaggtttg ccacctggtg
     3421 aacggtgaaa tgctcttgca ggcgttgcag taaatcatca ggtaaggctt tgtagaggat
     3481 aacggacggc ttcatgcttc tctccattca ctgataaggc gctcacctta gcctgaaata
     3541 tgatgaagga aaactgaaga atgccaggtg atttctgcat cacctggcat gaaagggatt
     3601 acagcgggct taaggtaatt tctacacggc ggttttgcgc cttaccttct gcggtgctgt
     3661 tgctggcgat tgggttagcc gggccaaggc cctgagtacg gatgcggctg gcgtccacgc
     3721 cctgggtgat caacgcgctg gcaacggaat ccgcacgctg ctgggagaga cgcatgttca
     3781 ggtcgtgacc ccccgtgctg tcggtataac caatcacgtt aaccgccgtt ttcggatact
     3841 ctttcagcac cattgccacg ccggtcaggg tgttagcgcc tgccggtttc agggtcgcgc
     3901 tgctgctgtc gaaggtcaca ttgttcggca tattgaggat aatgttatcc ccgctgcggg
     3961 ttacgctaac accagtgccg cgcattttgt cacgcagctt cgcttcctgc acatccatgt
     4021 aataacccac gccgccgccc agagctgcgc ctgctgctgc gccaatcagc gcgcctttac
     4081 cgcgatcttt cttcgaagaa gagagcgcac caatacccgc gcccacgaga gagtccagac
     4141 ctgcgccgat agcagatttg cctgcttcgc gttcgccggt gtaaggggta gttgtgcagc
     4201 cagataccgc cagagcgcca ctcactacgg cggcaataag ataaacacgt ttcttcattg
     4261 ttaatcctta ataacctttt tattctttgc cacgggttcc gtggcgggag attatgccgc
     4321 gtgaacatga agattattcc tgggaatact cggaaatttg taagtaatat ttaactgctc
     4381 aatacatcta acctttcagg agtcttcggt ttggccaact catcctcacg atattccgtt
     4441 ctgactgccg cccactgggg gcccatgctg gttgaaaccg acggcgaaac cgtgtttagc
     4501 tcgcgtggcg cgttagccac aggaatggaa aactccttgc agagcgcggt tcgcgaccag
     4561 gttcacagca atacgcgggt acgatttcca atggtgcgca aaggctttct cgcgtcaccg
     4621 gaaaacccgc aaggcattcg tgggcaggat gaatttgttc acgtgagttg ggatgaggcg
     4681 ctggatctta ttcaccaaca acataaacgc attcgtgagg cttatggtcc ggcatcgatt
     4741 tttgctggtt cctacggctg gcgttcaaac ggcgtgctgc ataaggcctc gacattatta
     4801 caacgctata tggcgctggc aggcggttat accgggcatc tgggggatta ttcgaccggt
     4861 gcggcacagg cgatcatgcc gtatgtcgtg ggtggcagcg aagtttatca acagcaaacc
     4921 agttggccgc tggtgctgga acatagcgat gtcgtggtgt tgtggagtgc taacccactc
     4981 aatacgctga aaattgcgtg gaatgcatct gatgagcagg ggctttctta cttttccgca
     5041 ctgcgtgaca gcgggaaaaa gctgatctgt attgatccaa tgcgatcgga aaccgtcgat
     5101 ttctttggcg ataaaatgga gtgggtggca ccgcacatgg gcaccgatgt tgcgctgatg
     5161 ctggggatcg cccatacgct ggtggaaaat ggttggcacg acgaagcgtt tctggcgcgt
     5221 tgcaccacag gttatgccgt cttcgcctct tatttgctgg gcgagagtga cggaatagcc
     5281 aaaaccgccg aatgggcggc agggatttgt ggggttcacg cagcgaaaat tcgcgagttg
     5341 gcggctcttt tccaccaaaa cacgaccatg ctgatggctg gctggggaat gcagcgccaa
     5401 cagcttggtg agcaaaaaca ctggatgatc gtcacgctgg cggcaatgtt ggggcaaatc
     5461 ggcacacccg gcggcggttt tggtctttct tatcattttg ccaatggtgg taatcccacg
     5521 cggtgttctg cggtgctctc ttccatgcag ggtagcttgc cgggtggcag cgatgcggta
     5581 gataaaatcc ctgttgcccg tattgttgaa gcactggaaa accctggctg cgcataccaa
     5641 cacaatggca tgaatcgcct cttcccggat attcgcttta tctggtgggc gggtggcgcc
     5701 aacttcaccc atcatcagga cactaatcgc ctgatacgag cttggcaaaa accggagctg
     5761 gtagttatct ccgaatgctt ctggacggcg gcggcaaaac acgcggatat cgttctgcct
     5821 gcgactacct cttttgagcg taatgatctc accatgaccg gcgattacag taatcagcat
     5881 ctggtgccga tgaagcaagt ggtgccgcca cgctatgaag cgcgtaatga ttttgatgtt
     5941 tttgccgagt taagtgaacg ctgggagaag ggcggttatg cacgttttac ggaaggaaaa
     6001 agtgagttgc aatggctgga aacgttttat aacgttgccc gacagcgcgg ggcaagccag
     6061 caggttgaat tgccgccatt tgctgagttc tggcaagcca atcagttaat tgagatgccg
     6121 gaaaacccgg acagcgagcg gtttattcgc ttcgctgatt tttgccgcga tccgcaggcg
     6181 catccattaa aaaccgccag cggtaagatt gaaatcttct cgcagcgtat tgccgattac
     6241 gcttatccgg attgcccggg gcatccaatg tggctggagc cggacgaatg gcagggcaat
     6301 gccgaaccgg aacagttaca ggtactttct gctcatccgg cgcatcgtct gcacagccag
     6361 ctgaattaca gttctctgcg cgaattgtat gcggtggcaa atcgtgagcc tgtcaccatt
     6421 catcctgacg atgccctggc gcgcggcatt caagatggcg atactgttcg gctgtggaac
     6481 gcacgcgggc aaattcttgc cggagtggtc attagcgagg gaattaaacc tggcgtgatt
     6541 tgtattcacg aaggggcatg gccggatttg gatttaaccg ctgacggtat ttgtaaaaac
     6601 ggcgcagtca acgtgctgac caaagatctc cccagctcgc ggctggggaa tggctgtgcg
     6661 ggtaatacgg cgctggcatg gctggaaaaa tacaacggtc cggaactgac acttacagcg
     6721 tttgaaccac cggccagctc ataatccagg tgggtagttg ggtttcatcc tgccatgcgc
     6781 aatcgacaat gtgaaaaccc tgcgcctggt aaaaatttat cgccggttga tttttttgat
     6841 aaacctccag catcaggtgg ggatggcgct gctgcacata ttgcatcagc gccttaccaa
     6901 taccgcgcct gacggccttc ggtgcgacaa acatcgctgc cagaaatcgg ccttccataa
     6961 tgctgacaaa accgagaagc ttactgtctt cttcccagac ccagttttgc gcattggcaa
     7021 gatacgcatc ccgcaccagc ggaatgcaat cacgccagta attcgctttt ataaagggat
     7081 gtccccaggt tgtactttcc agccacagtt cgaggatcgc ggggagttct gaacgttgcg
     7141 cttcccgaat catggtttat ttcccggata gcaacagcag ccaaccacat gatcattcac
     7201 cagcccacat gcctgcataa aggagtaaca gattgtggta ccgacaaact taaaaccacg
     7261 ttttttcagt gctttagata gggcgtcgga ggcgggcgta gatgtgggga tttcgctcaa
     7321 cgttgtggct tgtgtcacct gtggctgatg atttacaaac gaccagacaa agtcggcaaa
     7381 cggttcgccg ttctgttcca tttgcaggta cgcccgcgca ttaccaataa ttgcctgaat
     7441 tttcccgcga tggcggataa tcccggcgtc ctgtaccagt ctttcgacat cctcttcctg
     7501 cattgctgcg accttcaccg gatcgaactg atgaaagcag gcgcgatagt tttcgcgttt
     7561 tttgaggacg gtgatccacg ataacccagc ctgctgccct tcaaggcaga tcatttcgaa
     7621 cagtttttta ctgtcagttt caggcacgcc ccactcatta tcatggtagg caatataaag
     7681 cgggtcctga ctcacccagc cgcaacgttc catactttcc ctcgctatgt acccgatcgt
     7741 aaaaatttca gccgcttttc ttgacgcatc ggtgaaaaag tcaatattta atacagggct
     7801 actatgcccg atatccttca tacaatgaca ataatattgc cgaattcggc tcttccctgg
     7861 agtcgtgtta atgatcataa aaaaaagcgg tggtcgctgg cagctaagcc tgctggcgag
     7921 cgtggtaatc agcgcctttt ttctcaacac agcttacgcc tggcaacaag aatatatcgt
     7981 tgatacgcaa cccggacatt ccacagagcg ttacacctgg gatagtgatc atcaacctga
     8041 ttacaacgat attttgtcgc aacgtattca aagtagccaa agggcgctgg gactggaagt
     8101 caatctggcg gaagaaactc ctgtggatgt gaccagcagt atgagtatgg gctggaattt
     8161 tcctttatat gaacaggtta caaccggccc ggtcgcggca ttacattacg atggcacaac
     8221 cacctcgatg tataacgagt ttggcgacag tactaccacg ctgaccgatc cgttatggca
     8281 tgccagcgtg agtagcttag gctggcgtgt tgactcccgg cttggcgatc tccgaccctg
     8341 ggcgcaaatc agctataacc agcaatttgg cgagaatatc tggaaggcgc aatcaggcct
     8401 gagccggatg acggcgacaa accagaacgg caactggctg gatgtcaccg taggcgctga
     8461 tatgttgctc aatcaaaata ttgccgccta tgccgcgcta actcaggcag aaaataccac
     8521 taataatagc gactatctgt atacgatggg ggttagcgcc agattttaac gtaacagtca
     8581 caattgaaac cattgaataa caatagttgt ggtgatagtg ggtgctaact tacaaataat
     8641 aaatttggtg aataattgtc gcgtcattca ttcctgaact aaggcatttc attccgttct
     8701 gatggcattt catgccgttt ttccccaggc ataaaatgca cttcgttatg gttgtcggca
     8761 gagatttttc ctttttatta ctgcaggaat actgccatga caccttcaaa ttatcagcgt
     8821 acccgctggc tgacactcat cggtactatc attacccagt ttgcgctggg gtcggtttat
     8881 acctggagcc tgtttaatgg cgcgctttct gccaagctgg atgcgccggt aagccaggtc
     8941 gctttctctt tcggcttgtt aagtctgggg ctggcaattt catcttctgt tgcggggaaa
     9001 ttacaggaac gttttggcgt taaacgcgtc actatggctt ccggcatttt gctaggatta
     9061 ggcttcttcc tgacagcgca ttctgacaac ctgatgatgc tgtggttaag cgccggtgtg
     9121 ctggtcggtc tggcggatgg cgcgggttac ctgctgacgc tctctaactg cgtgaagtgg
     9181 ttcccggagc gtaaaggtct gatctccgcg ttcgctatcg gttcttatgg tcttggtagc
     9241 ctgggtttca aatttatcga cacgcagctg ctggaaacgg tgggtctgga aaaaacattt
     9301 gtgatttggg gagcgattgc gctggtgatg attgttttcg gcgcaacgtt aatgaaagac
     9361 gcaccaaaac aggaagtgaa aaccagcaat ggtgtggtgg agaaagatta cacgctggca
     9421 gagtcgatgc gtaaaccgca gtactggatg ttagcggtaa tgttcctgac tgcctgcatg
     9481 agcggcctgt acgtgattgg ggtagcgaaa gatatcgccc aaagtctggc acaccttgat
     9541 gtggtttccg cagccaatgc agtaacggtt atttccatcg ctaacctttc aggtcgtctg
     9601 gtgctgggca ttctgtctga caaaattgcc cgtatccgtg ttatcaccat tggtcaggtg
     9661 atttcgctgg tgggtatggc ggccctgctg tttgcaccat taaatgcagt gacgttcttt
     9721 gcagcgattg cctgcgtggc atttaacttt ggcggcacta ttaccgtctt tccatcactg
     9781 gtcagtgagt tcttcggcct caataacctg gcgaaaaact acggtgtgat ttacctcggt
     9841 ttcggtatcg gtagcatttt tggttcgatt atcgcctcac tgtttggcgg tttctatgtg
     9901 accttctacg tgattttcgc cctgctgatt ctgtcattgg cgctttctac gacgattcgt
     9961 cagccagagc agaaaatgtt gcgtgaggcg catatttaga aatatgttgc tactgaaata
    10021 aatacgagga gggagacttc aaagtctccc ttttttatgg acgcatatta aaagaacaat
    10081 aatattcata ccacaaatat attttattta tatatta
//
LOCUS       DAJVUY010000151        10001 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.151, whole genome shotgun sequence.
ACCESSION   DAJVUY010000151 DAJVUY010000000
VERSION     DAJVUY010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10001
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.151"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(266..1609)
                     /gene="gdhA"
                     /locus_tag="OQQ72_003386"
     CDS             complement(266..1609)
                     /gene="gdhA"
                     /locus_tag="OQQ72_003386"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HCS2013001.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVGAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1845..2117
                     /locus_tag="OQQ72_003387"
     CDS             1845..2117
                     /locus_tag="OQQ72_003387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HCS2013002.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEEILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(2083..2490)
                     /gene="nudG"
                     /locus_tag="OQQ72_003388"
     CDS             complement(2083..2490)
                     /gene="nudG"
                     /locus_tag="OQQ72_003388"
                     /EC_number="3.6.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
                     /protein_id="HCS2013003.1"
                     /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVELDES
                     QQQALVRELNEELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV
                     WCSPEEALQYPLAPTDIPLLEAFMALRAARAAD"
     gene            2577..3188
                     /locus_tag="OQQ72_003389"
     CDS             2577..3188
                     /locus_tag="OQQ72_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416272.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS2013004.1"
                     /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP
                     FLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFIL
                     AAPEQNALAGGWLLFAFISTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET
                     ILLFVLGCLFPAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ"
     gene            complement(3197..4504)
                     /gene="ynjE"
                     /locus_tag="OQQ72_003390"
     CDS             complement(3197..4504)
                     /gene="ynjE"
                     /locus_tag="OQQ72_003390"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YnjE"
                     /protein_id="HCS2013005.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS
                     ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDSSK"
     gene            complement(4571..5224)
                     /locus_tag="OQQ72_003391"
     CDS             complement(4571..5224)
                     /locus_tag="OQQ72_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS2013006.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(5224..6759)
                     /locus_tag="OQQ72_003392"
                     /pseudo
     CDS             complement(5224..6759)
                     /locus_tag="OQQ72_003392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(6732..7898)
                     /locus_tag="OQQ72_003393"
     CDS             complement(6732..7898)
                     /locus_tag="OQQ72_003393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS2013007.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WDDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(7908..8456)
                     /locus_tag="OQQ72_003394"
     CDS             complement(7908..8456)
                     /locus_tag="OQQ72_003394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS2013008.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(8456..9163)
                     /locus_tag="OQQ72_003395"
     CDS             complement(8456..9163)
                     /locus_tag="OQQ72_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS2013009.1"
                     /translation="MMKMQSRKIWYYCITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFISTGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(9178..9855)
                     /gene="ydjY"
                     /locus_tag="OQQ72_003396"
                     /pseudo
     CDS             complement(9178..9855)
                     /gene="ydjY"
                     /locus_tag="OQQ72_003396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(9860..>10001)
                     /locus_tag="OQQ72_003397"
     CDS             complement(9860..>10001)
                     /locus_tag="OQQ72_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS2013010.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         2386 a         2725 c         2583 g         2307 t
ORIGIN      
        1 atatctgctg ctatcgcaga aagttaacgg atgctgaact tgaagcgtgt tatcgttacg
       61 acaagcagtt ttgggagcac tacagtaaga aatgccgttg gcccataaga aatgttccct
      121 ggggagcatc atccgttaaa tactcataaa cgcctgaaat tttgccgggg gcgctgcgct
      181 tgcccggcct acattagagc gtaactgcaa tgaattgtgc ccatttgtag gcctgataag
      241 cgtagcgcca tcaggcattt acaacttaaa tcacaccctg cgccagcatc gcatcggcaa
      301 ccttcacaaa accggcaatg ttcgcgccct gcacgtagtt ggtttgctca ccttcaccac
      361 catgctcaac acaggcatgg tggatatcca gcatgatgtg atgcaaacgt gcgtcaactt
      421 tctcggcttt ccagcccagg cgcgcagcgt tttgcgccat ttcaaggcct gacgttgcta
      481 caccgccagc attagccgct ttacccggtg caaacagtac gcctgcctgc tggaacagtt
      541 cagtcgcttc gatggtggtc ggcatatttg ccccttcggc gacggcttta acgccattgg
      601 cgataagctg atgcgcggcg ccaacatcca gttcgttctg ggtggcgcaa ggcagggcga
      661 tatcaaccgg tacagaccac ggctgttggc cttcgagata gaccagacca aattctttgg
      721 cgtaatctgc cactcgacca tcgcggctgg ctttgatttc gataagacgt gccagtttct
      781 ctttcgtgaa tccgctttca tcaactacag tgccgctgga gtctgacgca gtgatcacac
      841 gagcaccaaa ttccatcgct ttttcgatag cgtactgggc gacgttgccg gagccagaaa
      901 cggaaacgcg catcccttca aaacccatac cgtggcgttt taacattgct tctgtgaaat
      961 aaaccagacc gtagccggta gcttccgggc gaataagact accgccaaat gaaaggccct
     1021 taccggtgaa gacgcaggcg gtattgttgg agagcttttt catcatcccc gccataaagc
     1081 cgacttcacg accaccaacg ccgatatcac ctgccggaac gtcagtatcc gcgcccagat
     1141 gacgataaag ctcggtcatc agcgcctggc agaaacgcat cacttcgctt tcgcttttac
     1201 ctttcgggtc aaaatcgcta ccgcctttac caccgcccat cggcagggta gtcagggcat
     1261 ttttgaaggt ttgttcgaag ccgaggaatt tgagaatgga gaggttaact gacggatgga
     1321 agcgcatacc gcctttgtac gggccgatgg ctgagctgaa ctgcacacgc catgcacggt
     1381 tgacctgtac ctggttgcga tcatcaaccc ataccacgcg aaactggatc acgcgctccg
     1441 gttcaaccag acgctccagt aatgacatct ggcgatattt tggattttgt tcaagaaaag
     1501 gccagagtgt ggtcattact tcacgaacgg cttgcgcgaa ctcggtttga ttcgggtcgc
     1561 gcttttggac atggttgagg aatgactcca gagaatatgt ctgatccata gatataaaac
     1621 ccttatatat taatacgatt gtgcttatgt tgtttatgtc atgtgctttt gcagttttcg
     1681 actataccat caagaatgtg acggtaagca agaaaaaaat gacccaggaa agcaaattaa
     1741 taacgagagt aatctcataa ccaaatgcga taactcagac gctaaagttt tgccacccgg
     1801 ctaccgttat cagttgcaga gacaataacg ttaaggagtt ccctgtgagt cgagcattgt
     1861 tcgccgtagt attagcattt ccattaattg cactggctaa cccgcattat cgtccggacg
     1921 tggaggtaaa cgtaccgcca gaagtgttca gttcaggcgg gcagtcagcg cagccctgta
     1981 ctcagtgctg cgtttatcag gatcaaaatt attctgaagg ggcggtaatt aaagccgaag
     2041 aaatactgct gcaatgccag cgggatgaca aaacccttag cactaatccg ctgctctggc
     2101 ggcgcgtaaa gccataaacg cctctaatag tggaatgtca gtaggggcca gcggatattg
     2161 cagcgcctct tcaggtgagc accagaccag cgcctgatgt tcatgtgcct gtaacgtccc
     2221 gtggaagtcg ggtacgtgcc aggcatgaag atggataatc cggcccgaaa cttctcgctg
     2281 atggctggca acatactcac ccacagttgc ttcgatgccc aattcttcgt ttaactcacg
     2341 caccagtgcc tgctgctggc tttcatccag ctcgacttta ccaccggcaa actcccataa
     2401 tcccgcctga tcgctctggg cggggcgttg cgcgagtaaa attttgccat cacgttcaat
     2461 gatggcggca acaacttcaa tcattttcat aaattacaca cgggcagata agcgaaaaat
     2521 gccataatat ccgcactgtt gctcaatcag aaaggcttta tatttaagga gtgcctgtgc
     2581 tagaccgcca tcttcatccc cggattaaac cgttgttgca tcagtgcgtg cgggttcttg
     2641 ataaaccggg cattacgcca gatggtttaa cattagtggg atttgccatc ggcgtgctgg
     2701 ctctgccgtt tctggcgctg ggctggtatc tggcggcgct agtcgtcatt ttgttgaaca
     2761 ggctgcttga tggtctggac ggtgcgctgg cgcggcgcag agagcttacc gacgcgggcg
     2821 gctttcttga tatttctctc gattttctct tttacgcgct ggtgccgttt ggctttattc
     2881 ttgctgcacc ggagcaaaat gcgctggcag gcggctggtt gttgtttgcg tttatcagca
     2941 cgggcagcag ttttctcgcc tttgctgcac tggcagcaaa acatcagatt gataaccccg
     3001 gttatgcaca taagtcgttt tactatctgg ggggattaac cgaaggcaca gaaacgatct
     3061 tactgtttgt gctgggatgt ttattccctg catggtttgc gtggatcttc ggtgcgttgt
     3121 gctggatgac gacctttacg cgggtgtgga gtgggtatct gacgctgaag tcgctccagc
     3181 gtcagtaatt gcaatgttat ttgctactgt ccgggccgcg ttcaccggtt gctaccggat
     3241 tttttggatc gctgctccat tcgtaccagc cgccgtcata cacggaaaca ttcttccaac
     3301 ccatggcgcg tgcgtacata aaggtttcgg acgcgcgcca gccggtgccg cagtagaatg
     3361 aaacttgctg ctctggtttg atattccacg ctttccacat agcggtaata tcatcggcgc
     3421 tgcgcatggt gccatccggg ttatgaaaat cttccatatg cgtcgagtcg ctaccagcgt
     3481 gtccccaacg tgctccggct atttcacctt ttggtttaat atagctgtaa ccgctggtcg
     3541 taccgataaa ttctggccac gaacgaatgc tcaccagcga tgcatcctgg cgatgcagca
     3601 gtccacgggc ctgttccata tcgagcatca actgcggttg tgccgggatc ttcacgccga
     3661 aatccggttc cgctttcact ttcggtggcg ttcctcgctc aacaggcagt cccgcgtcgg
     3721 accaggtttg ccagccgcca tccagcagac gcacatcttt cacgcctgcg tagagcataa
     3781 tttgcgccac acgcgctcca gcgtatacgt cacgcccgta cagaatgacc gtggtgtcat
     3841 ggcgaatgcc gtgttttgcc agcatcgctt ttagttgttc atcagaaact ttgttccaca
     3901 gcggttcgct ttccacttcg ttggtatcga tgtagtcagc accgggaata tggctgataa
     3961 ggtaaagctt aggagcgccc caggccgctt caatgacttt ccagtcaccg gcaggtttcg
     4021 ccgtaacctc tttaccttgt tgcaggtcgt gcagccattg cggataaacc agctgctcaa
     4081 agtgcggcag tttttgtaga cgggaaggtt cgcttagcgc gtcactcaga atggagatat
     4141 gcgtaaaacc tgctttttgc agtcgcgttt tgacggcgtc gacatctttg tcattaccgt
     4201 acagcgccac cggggcatcg gctttcaggt tatgttgctt gatccacgcg ttgagctgtt
     4261 cggtgctcat tttgtcgagc cagctggcag agaggtttaa ggcggcaggt tcatgaccag
     4321 aagggccatt taaggtttgt ggccagccgt tataaaacgc gctggggcga gtatctatcg
     4381 ctttgccatt ttgttgttga agctggtcaa gtgtaagagg cttcgccagt tcagcggccc
     4441 acgaagaagc gcaagccagc cctaaagcca ttgccagcgc ggtcatttga gaaacacgtt
     4501 tcatcgaaaa tcccgacatt gtagttttga gtgcgccatt ctgaactgac gcattgagaa
     4561 aaactttgcg ttatcgcagt ttgttgtaat tttctgacca ctgcgccata tccagaacag
     4621 aactatcagc aggaacatcc tggagatcgt gcgttacctg aacgacgggg atcgccagtt
     4681 cgcgaacttc gctgaacacc cactggcgaa aattatcgcg cagagccaca tcaagacggc
     4741 tgaatggctc atccaggagt aacgcttttg gctgagcgag aagggcgcgc agcagggcca
     4801 cccgcgctcg ctgaccgcct gataatgtcg cagggtcctg gtgataagtt tcagccagtc
     4861 ccgctcgatc aagcgcgtct ttcacggcat tgcgcctggc agtccccttg agcgtcgacg
     4921 gtagcgccag cagtaaattt tgcccgacgc tgaactggtc aaataacagt gcatcctgga
     4981 aaagaatgcc aatctgacgc tgtgcggtgg gtagcatgtc aatccgttgc tcattgagcc
     5041 atagctcacc tgtacaagaa aactgtccag ccagtgcacc aatcatccat gaaaacagag
     5101 tggattttcc acagccagac ggccccatta acgtgacgat gtcaccttta tcaaccgtaa
     5161 agttaacgtt tgtcagcaag cggctttctg gtaaacgtag cgaaacattt ttcacgcaga
     5221 gcattagcgg agtccttgtc tgacataacc tacccatttt gcgactaacg cggtcagggc
     5281 aaaaataata agcggtaaca acagttgcca taaagcctgg gcggcgagaa taccgttgct
     5341 gccgccgctg cttaatgcca ccgcctcagt ggtgagcgtc ggaaaacgcc ccgcgcccag
     5401 ccacagcgtc ggcatatact gcgcaatact gactgaaaat cccaccgcga aggcaatcag
     5461 cacagggcgc aacatgagtg tgcatttcac gtaaaagaag attttggccc gctaccagcc
     5521 cagtgtttgc gcaatcaaaa ttaaccgtga atcaatgcgc tgccaggcgg gttgcaggat
     5581 aaacagcatc cacggcatta cccacagcag atgcccccag accaccgccg tccagcttcc
     5641 atccaggttc agccatagcg ccagcgtgta ctggcccgcc accagtggca gagcgggcaa
     5701 tagaatgggc aaccatagcc acaactggcg acgctgtggc ccccattcca gccacagcag
     5761 taacaggagc aaagcgatga atgttgctac cagccccatt gtcagactgt tgatgagtgc
     5821 ttcactattg atcgtcgact gatccgcgag gatcgccagc agaaccacac acagcacacc
     5881 ggttaagggt aaaaaactcg ccagcgtagt gcctggtaat aaaggtgtgg caggcttgcg
     5941 aatgccatct acgcggggaa tagtgcgccg ccagctgcgc catagcagat agctcagcaa
     6001 aacgtaggcg gcgagtaaca gcatcagcag cagactggcg agtgcgcctt tcgtttgttg
     6061 atccgcgtcg ccctgagtta accactgcca gctaattact gccagcgtcg gtggattacc
     6121 tggcccaaga ataatcgcca catccacgac cgaaagcgac caggcaacaa tcgccagcat
     6181 cgccattgcc agcgaaggcg cgacggaggg caacagcagc cagttcaggc attgccagcg
     6241 gctgtagccc agcgaatcca gcacaatgac ctgctgcaac agccgttttt cgctcaatac
     6301 tgccgctaag atccacagca gaaatgcgct ttctttcact gcaagggtga ggcccagacc
     6361 gatgccaaat cggtccattg gcggagtgaa atacgggaaa tagtcatata gcagccctcc
     6421 gtcagcaaag agcagcaggg cgctggtggc aaaagccaca tggggaatgg cgagcagcca
     6481 cggcagacgg gcgcacatac gctgccattt cggcccaggc catagcgcca caatcaccag
     6541 cagggcaatc aacaatgccc cgaccgccgc gatggttgtc gacaccagcg ttgccagtaa
     6601 tgcatgcggt aactgtggat cggcaaataa cgcctgccag tgtgtcaacg acaacgcagg
     6661 cgatatcagc gtgagagctg ccgggatcag cggtgcataa atcaccgcca ccatcgccca
     6721 cagcaaaaag attaatgcgt accgtaacgg cgtaaccatt cttgttccag tgcattcacc
     6781 catcctgcgt gcggttcagc cagtaccggc ggcagatcct gcggcattct tgattgcaat
     6841 atttcgcgct gcccgtcagg cagtttttgc ggatcgagaa cagaaggatc gtcccagaca
     6901 acgggatctg ctttacgcag ttgcgcatcg ggtgagagca gaaaattggc aactaccttc
     6961 gccgcagcac tggcattcgc gttggctgga atggtgacga aatgcacgtt gccaatcatc
     7021 ccctcgcgaa agccaaaact gtaactgctt gccggcaaat cgccgctggc gattttttgc
     7081 tgcgcatgcg cggggttaaa ggtcagcgac aggcgcaatg tgccggcttt cagcagagca
     7141 tccatccgcg cgggcgaagg cgggaaatcc tttccttcgc gccacaaata cggatgcagt
     7201 gcatcaagat attgccacaa gggcgcagtg acacgggcga aagtcgcatc gtccggcgct
     7261 tcttttaatg cggcgggatc tggcgtcagc ataatcagca actgttcaag aaacgccgtg
     7321 ccggtaaagt ccggtgggcg cggataagta accgtgccgg gattggcttt agcaaactcc
     7381 agtaaggctt gcggcgtttg tggtggctgt ggcgtaacat cgcggcgggc gataaacgtc
     7441 agttgtgcgc cgccccaggg cgattccgca ccttgtgtcg gcactgaaaa atcttcccgc
     7501 accggcagct gtgtgtcgac atagcgccag ttgggcagag tctccgccca gcccgtttgt
     7561 aataaattgg cctcttttaa ggtgcggaag ttttcgccgt tcacccagag cagatccacc
     7621 gagccgcccg ttttacgacc ggcagcagct tcggtctgaa tgcgcttcac cgcgtctgcg
     7681 gcatccgcga gacgaacaat cttcaggttt atagcgtaat gggttttcat ctcgccgcta
     7741 acccagtcga gatagcggtt aattgcggta tcgccgcccc aggcgttaaa ccagacggtt
     7801 tgccctttgg cctcattttt aatttcctgc cagtcactgg catgtgttgc caaagaaaac
     7861 agcgataaca atcccagcaa ccacccacaa tggcgcatct tctctcctta agaacgtttt
     7921 tccggaatac ggcacagccc ctgagcggga atgtccatgg cagaattaaa acgagccgac
     7981 aggttttgca ggccgatcaa tgccgtcagt tcggtgagcg cctgagcgtc aaaatgcgca
     8041 gccagtcggg tacgcagggc atcatcgact gttggcggtg tgacgcttgc ggcttcggcg
     8101 tactccagcg ccagccgttc ttcatcgcta aagagcgggc tttgccgcca gtcagccact
     8161 gccagcagtt tatcggtgct gccggtacgc tcggcgactt tcatactggt gatatccaca
     8221 caaaactcac acaggcacat ttgcgcaatg cgcgcgctga caagcgatcg cactaccgga
     8281 tcgagcggtg agcgtttgcg ctccagccac ccaacaaaca ttgacaccaa ataaaagata
     8341 aacgggatcc gcccccacca gcgaatcggg cttagcacct cgccgtaatg gcgacgatgc
     8401 agccacgcct gcggacgtaa aatgaaagga attttgctaa gcggcggtaa acccatcagt
     8461 cattcctctt ctggcgctca agccatattt tcttcgccat aaaaatcacc acggtcaggg
     8521 caaacagaat aaacagtccg gtgacaaacc agaaagtacc gcctgttaac atgctgcccg
     8581 cccaggaata aacaatagtc gccggtaatt gaccaagccc ggtggagata aaaaacgagc
     8641 gaaaacgtat tgaagtcaga ccggcagcat agctgattgg atcgaaaggg acaaaaggca
     8701 ataaccgaca gaccaggatg gtgtgtttgc cgtagcgagt gaaaaagccg tccatactgt
     8761 caagcacggt tttgccggtt aatttttcca ccacttcgcg gcccatcact ctggcgataa
     8821 aaaagcacag cgccgcgccg gccatcgaac tggtccacga cagcaagccg ccccagaacg
     8881 cgccaaacag cgacgcattg gcaaaggtga tcaaaaacgc aggtagcggt gcagcaatgg
     8941 cctgtaaaat catcaacaag aacgagacaa ctgccgccag tgcgccgtaa gactgaataa
     9001 agcgttctat accctgttgg tccacggcgg caaacgccgc aacgctgcga ttgataaact
     9061 catggacgcc gggaagcagc gcccatgcga gcagcatagc gaacaacagg atgatgaggg
     9121 ttatacagta gtaccagatt ttacgcgatt gcatcttcat catcctttat cctggcttta
     9181 ttcggtgatt ttaaaggtaa ccgttgccag cgtgttatcc gccgggagaa ctgaggcatt
     9241 gcctttgaat ttcacttcgc cgcgtttttc caccgcacca taagtgtatg ttgcattgct
     9301 gacgatgccg accgggcagc tatccagaca caccagtcaa cccgttttct tctcttctgc
     9361 tgccgttaaa ttaccgccaa agcgcatgtc cagtttcttg ccattactgt caacaatcac
     9421 ttcatcgaag gaatacgctt ttgccgcccc ttgccagttg accgaaatat ccagtttgct
     9481 gcctgtgaca tgagtcgttt ctttattatc catcgtcatg ttttcgcccg gcgtaccacc
     9541 tgcctctttc agggcttcat aaaatgcttt cggggtcgca taagccataa acagcgattt
     9601 atgtccgttg gagccatctt taaacacaat accgtgacga gtgtcgtcgg tgaggaaacg
     9661 accattaatt tgcaccagca tggttaccgt atggttattg gcatcgacgc gcagcggttg
     9721 gctgttcgaa agtccgtcgt attccacttt tgccgccgaa ttctcttttt gatcgcagcc
     9781 gctaagcccg gcaacagcca gtaagcagag tgcagccagt ccttttttcc atgacactga
     9841 ataatgttgc gacatcgttc tatccttcat tttttgggtg agtaagcggg ctgcggcgcg
     9901 aagcagacag atccacatgt ttgtgtcggg cgtagagttt tgcgagctgg acgagaataa
     9961 acagcgccag gcccgccaga cagagttgta aaataaagcg c
//
LOCUS       DAJVUY010000152         9997 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.152, whole genome shotgun sequence.
ACCESSION   DAJVUY010000152 DAJVUY010000000
VERSION     DAJVUY010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9997
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.152"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(230..2089)
                     /gene="gss"
                     /locus_tag="OQQ72_003398"
     CDS             complement(230..2089)
                     /gene="gss"
                     /locus_tag="OQQ72_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HCS2013011.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2294..3160
                     /gene="yghU"
                     /locus_tag="OQQ72_003399"
     CDS             2294..3160
                     /gene="yghU"
                     /locus_tag="OQQ72_003399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HCS2013012.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPICVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS
                     DFETNTEDKRQG"
     gene            complement(3283..3531)
                     /gene="hybG"
                     /locus_tag="OQQ72_003400"
     CDS             complement(3283..3531)
                     /gene="hybG"
                     /locus_tag="OQQ72_003400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HCS2013013.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3544..3885)
                     /gene="hypA"
                     /locus_tag="OQQ72_003401"
     CDS             complement(3544..3885)
                     /gene="hypA"
                     /locus_tag="OQQ72_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS2013014.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3878..4366)
                     /gene="hybE"
                     /locus_tag="OQQ72_003402"
     CDS             complement(3878..4366)
                     /gene="hybE"
                     /locus_tag="OQQ72_003402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HCS2013015.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4359..4853)
                     /locus_tag="OQQ72_003403"
     CDS             complement(4359..4853)
                     /locus_tag="OQQ72_003403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS2013016.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4853..6556)
                     /gene="hybC"
                     /locus_tag="OQQ72_003404"
     CDS             complement(4853..6556)
                     /gene="hybC"
                     /locus_tag="OQQ72_003404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HCS2013017.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6553..7731)
                     /gene="hybB"
                     /locus_tag="OQQ72_003405"
     CDS             complement(6553..7731)
                     /gene="hybB"
                     /locus_tag="OQQ72_003405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HCS2013018.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTREELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7721..8707)
                     /gene="hybA"
                     /locus_tag="OQQ72_003406"
     CDS             complement(7721..8707)
                     /gene="hybA"
                     /locus_tag="OQQ72_003406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HCS2013019.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8710..9828)
                     /gene="hybO"
                     /locus_tag="OQQ72_003407"
     CDS             complement(8710..9828)
                     /gene="hybO"
                     /locus_tag="OQQ72_003407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HCS2013020.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
BASE COUNT         2419 a         2756 c         2505 g         2317 t
ORIGIN      
        1 ggcaaagtga aatatcattt tttaacgata aaaagagtgt tatttcttgt gtatcagaca
       61 ataagcattc attcaaaacc tttagaaata atcaaaacac aggtattcca ctggttaata
      121 tattcacata tgaaatgaat aaatattaga acatataaat attgaatatt ttgattaatc
      181 cccgtactga ttattcttca taatcagtac ggggttgcta caacatgtat tactttttca
      241 ccacaattaa cggttcaata tcactctctt ttttgatgac cagtgattca tcaccgcgca
      301 aacacgtccc accgtagttg ccgcccacgg tgaaggtaca tacctgaatg tatttaccgt
      361 ccactttcgg caaacaccac agttgctgat agatgttttt ctgctcggca aatttaccgc
      421 tggttttgtc cagcacctct tcatgatggc tgaccaggtc gatattgcta ccacagcgac
      481 cggcaatcgg tttcactgcg taacctgttt tcaccaattc atcattaaca gtgaaatcgg
      541 tatccagcag gtaacgatgg tgcgggaaca gcgaccagag gatcggcaga atcgctttgt
      601 tgccggggat caccgtccac agcggctcaa agactagcac ttccgggcgc agcaatacgt
      661 cgataagacg cacttcgttt tgcggatgac cggtacggat tggcaccgca gcaaactcac
      721 ggtcgctaac ttcacgaatc tgatcaaacg cggtttccca cgcccaggtt ttccacacgc
      781 agttaaccag tcgcccttcc ccatcaatca gttgcccggc agcatcccag cccagttcat
      841 ccaatccacg caagatacgc gtttcaaagc ccgcctggtg cagcgcctgc tccataaact
      901 gcgcgtgata gttttcctcg atatctttgt cctgcatgat atggacaaac ggacgtgcac
      961 gactgtgttt ccaggcacca gccaattcgt taatcagccc ttccgccgga ttgaagccgt
     1021 tgcctttata gccctgctcc gcccaacgtt cgaggatcaa gcccgcttcg gtatgacagg
     1081 aggcggagtc ggcgttgtac tcgtaaacct tcaggccacg ctcatccatg cagaaatcca
     1141 tacgaccagt gatcatatgg tgacggcgac gctgccagga gagacgcaaa cgtggccaga
     1201 ggattttcgg aatgtcgaac agcgccagca ggttgtcatc tttcagtacc ttgtcggttg
     1261 cgtgaagata catcaggtgc agctcgttgg tggctttaat tagctcctgc tcggcactct
     1321 cggtaatggt gtagtaatga taaggatcct gattgatcac ctgaccgttg gcctgcacat
     1381 aggcgttttg cagcggatct ttttcatcca gccatttacc gtcaaactgg cctttgtttt
     1441 ccaggcgcgc tccgctgatt ttcagcagct cgcctgcaat ttccggctgc ggtaagctgt
     1501 attcagtatc ttccgtctgg atcatccagc ccagaatggt ggtgtcatca aaagtgtctt
     1561 tcagggtata gcagccgttt tcgaccacca tctccagctc acgcgtccac tgttgccctt
     1621 gcggcaacgg ggaatgaatc acgttctgtt ccgcaatacg gactttgttg ccatgcaatt
     1681 gggtaatgat ggcgacatgg ccagtgtctt taaattcacc gcctttatcc cagataagaa
     1741 gcgcacccgc gaccggcgca cgcggcgagc cgttaggaaa tgcctgcaat ggcaggatgt
     1801 tgtcattaac cacttctcgc aggaagcgca gcgagaaaat ctcccacgcc atacccacgt
     1861 cagtaaagac cacaccgtaa ttcagaaaga gaaaacggcg agcaaattca acgcattgcc
     1921 acttgtggcc catatattcg tcgtcgatat agctacggaa tacggcgtca tcttcgtatt
     1981 cctgcggatc gagagaactg taatctgaag agtagattgc taccccacct ggggcgtagc
     2041 ccaataatgt cccgaacggg gcatcctggc tggtcgttcc tttgctcatc actttacctt
     2101 taacaataca acctaagcag ttggcgtaat tgttgtgctc tgattacctg ctcagcgaca
     2161 ttaaccggac agaggtcaga ctaatcatac acctcatcgc agcggctggc gcaaagggtt
     2221 aaaaaattca cattctgtac agcaagtgac ctgccacact gcttcaacac taccactcag
     2281 aaggcaactc actatgacag acaatactta tcagcccgcg aaagtctgga cgtgggataa
     2341 atccgctggc ggcgcgttcg ccaatatcaa tcgcccggtt tctggtccga cgcatgaaaa
     2401 aacgctgccc gttggcaaac acccattgca actttattcg ctgggaacgc cgaacggtca
     2461 gaaagtaacg attatgcttg aggagctgct ggcgctgggc gttactggtg cagagtacga
     2521 cgcctggctg attcgtattg gcgatggcga tcaattctcc agcggctttg tcgaagtgaa
     2581 cccaaactcg aagatcccgg cgctgcgcga tcatacgcat aatccgccga tctgtgtgtt
     2641 tgaatctggt tcgatcctgc tttatctggc ggagaaattt ggctacttcc tgccgcagga
     2701 tttggcaaag cgtactgaaa cgatgaactg gctgttctgg ttacagggcg cggcaccgtt
     2761 cctcggcggt ggttttggtc acttttacca ttacgcaccg gtaaagattg agtacgccat
     2821 caaccgcttt accatggaag ccaaacgtct gctcgacgtg ctggataagc aactggcgca
     2881 gcataagttt gttgcgggcg atgagtacac cattgcggat atggcgattt ggccgtggtt
     2941 tggcaacgtg gtgttaggtg gtgtgtatga tgccgctgag tttcttgatg cgggcagtta
     3001 taagcatgta caacgctggg cgaaagaagt aggcgaacgt ccggcggtga aacgtgggcg
     3061 tattgttaac cgcaccaacg gaccgctgaa tgagcagttg catgagcgcc atgacgccag
     3121 tgatttcgag acgaatacgg aagataagcg tcaggggtaa gggttggtgt tcgtcgcagc
     3181 aagccatcca ggccggataa ggcgttcacg ccgcatccgg caatcgtgca caatgcctga
     3241 tgcgacgctg ccgcgtctta tcaggcctac gaaagctaat catcacgcgc tggtaatgtc
     3301 gtaatccatt tggcgcagtg cgtctaatgt ggctttggct tcatcttcgt cgatgatgct
     3361 catggcaaat ccgacgtgta ccagcaccca ctggcccagt agatcggcag ggttaccttc
     3421 acaaatcagg gcgatattca cgtcgcgctt gataccacat acttcaacct gcgcaagctg
     3481 gtgaatatct tcaccgacag ccagcacctg gcctggaacg ccaatacaca ttattaactc
     3541 cggttattca acttcaatac ttttgacgat cagcgaatcg ccggtatcga cacgcaaccg
     3601 ctcgccgtga cagagcggac actgcgcatc gtgctgatga atctccacca cctggctgca
     3661 atcccagcac caggcctggg cgggtttata gacgatatgt aaatcgcacc cttgcgccac
     3721 cgttccgtgg cagacaattt caaaactaaa acggacggcg ctctcctcaa cgcaggagag
     3781 cgcgccaatt tccagccaca cggcggtgac gcgcttaaca tcgtgctgct ccgcctgccg
     3841 ttggataatt tcaacggcgc tctggcaaag cgacaactca tgcattttcg ccactcctgc
     3901 gaccaaacag cagggcgcga cgccctgcgt gtggtacatc cggattcgtg actggcagcg
     3961 aaaggatcat tcgtgcgcag tcatccgtca ggcgttggcc ctcttcaatc gacatactgt
     4021 gcgaaagcgg tgacatcagc gaacaggaga ggtattgcga aacaccgtcc agttcgccaa
     4081 cggtaaaggt catggtgcca tacggcagtt gcagaccaat tttttcactc actttgcgca
     4141 gcggccagag ttgatccggg ccggggaaga taactgcact cagcatccac ggggtgatca
     4201 cacaccccgt ccactgacct tcgaacagcg taaaatcaga aacatacacc ggcattgaag
     4261 gatgcagaaa agagagatcg tgcatcgaac gccgggcaat ttcttcaaac gctgcctgta
     4321 cttgcgcctt cggggaggtc tggaaacctg ctatctcttc agtcatgaat cgcctcccgt
     4381 gggatggctt ccacgcctga ttcgcgcagc gcagccagaa cctgctcaag cgcaggttca
     4441 atcattgctt caaccgtcgg cgttaagccg atgtgtggct ccagcgattc cgggatcacg
     4501 ccgaccaggg tcagcttttt cggaaactca ccggtgaagc gcagggccga caatacgtcg
     4561 gccaggccaa gctgatgcgg agagattttg ttggtaaaca acgccggaac ttcttcatcc
     4621 cgcaggatca tcatcgttcc cggcgtgttc tttttcgaca caatggcatc cgcaataatc
     4681 agatgatcgc gatttgccat gtcgccaagc agctccattc ccgccgtgcc gccatcgagg
     4741 atctcaacat aatccggcag aatgtatcgt tgctctaacg cttcgacaat ccgcacaccg
     4801 atggcttcat cggtcagcaa aatattgccg acccctaaga ctaaaatacg cattacagaa
     4861 ccttcactga aaccacttcg ttgccgtcgg catccactac gtgtaccgca caggccatgc
     4921 acgggtcgaa ggagtgaatg gtacgcacca cttccagcgg tttattcgga tcagcaaccg
     4981 gtgtacccac cagcgactgc tcgtaaggac cgacgtcatc attgaagtta cgcggaccag
     5041 agttccaggt tgatggaaca actgcctggt agttactgat aataccgtct ttaataacca
     5101 tccagtgaga gagcataccg cgcggcgctt cgaggaagcc aacacctttg aactcacccg
     5161 ttgccggaat gttcggtttc acaaaggtgg tgtgatcgcc tttgccgata ttggtgatca
     5221 gtgcactgta ttgattttgc aggatatcct gcaattcgca gcagtgaacg gtacgaccaa
     5281 taatacggcc cagcgtggag tgcagctgcg ccacttccag cgtgttgcca gtcagtttct
     5341 gataaatcgc aacgatttca ttcagtttgt tctgggtaga ttcgcgacct gccgccagtt
     5401 tcaccagcat attagccagc ggacccactt ctaccgtttt gccgtagaaa gtcggtgatt
     5461 tcacccagga atatttcccg tcgtcagacc aaccatcata agccggaatg gtggtacctt
     5521 cccacggtgc ctgcggcgct tcgtctttat accaggagtg cttcgcgctt tcctgaatgc
     5581 ctttgatcag gtattcatcg gaatgagaag tgatcggacg atacgaggac agatccgcat
     5641 tctcaatgta gccgcccggg aacaggaagc tgccgttttt actgtcggtc gggaattccg
     5701 gcacgctcag gtagttcacc gcacctttac cgcgcgtcag ccattccggg tagaacgcgg
     5761 caataactgc ggtatcaacc ttataaacct gttcaacaaa gtcgctcagc ttgtcgatga
     5821 aagacttgat gtacatcagg cgctcaaggt tcagcacgcc caaaccgtcg aggttgatcg
     5881 ggttcgcgac accacctacc gccaggttct gaatgtgcgg cgttttaccg cccagcagcg
     5941 ccacgacgcg gttagcgtca cgctggcact ccagcgcctg caggtagtgc gctaccgcaa
     6001 tcaggttcac ttccggcggc agtttcatcg ccgggtgacc ccagtagcca ttggcgaaaa
     6061 tacccaactg accgctggca accagatctt tgatcttgtt ctgaacttta gtgaactctt
     6121 ccggactgtt cagatgccag gtcgaaacgc ctttcagcat ttcggaggct ttggttgggt
     6181 cagcttgcag tgcagaagtg atgtccaccc agtccagcgc cgaaagctga tagaaatgaa
     6241 cgatatggtc atgcgtggtg tgcgcagcca gaatgatgtt acggatgtat tgcgcgttaa
     6301 ccggaacgtc gatattcagc gcactttctg ccgcacgaac ggaagacagc gcgtgagtgg
     6361 tagtacatac gccacagata cgttgcacaa tcatccatgc atcgcgcgga tcgcggtttt
     6421 tcacgatctc ttccatgccg cgccacatgg taccggaagc ccatgctttc gaaacgacgc
     6481 cattttcgat ttcgcaatcg atgcgtaaat gcccctcaat acgggttacc ggatcaatag
     6541 taattctctg gctcatgctt tgctcgcctc atgacgatta tgatcgtttt gttttaaagg
     6601 aggaagtatc ggcagtagac gaatgagtac gatgtaagcg caaatctcaa tagccacaaa
     6661 accaatagaa atcaacagtt cttccctggt cgggaagtag gcgtaaccgc cgcccgggtt
     6721 gaatgccacc agcgaatagg tcagacgcca ggttgcacaa cctaacagtg cgctcagtgc
     6781 tgacaggaac agcatgcggg aatcattacg cagcttcgcc acacgcagaa cgaccagcgg
     6841 gaagagcatc agcaggactt caatccagaa catcacggag tagaagtcac cggcaaacgc
     6901 taacgacagc ttgtcgcgat agataagctc gccaaagcgc agcacgataa aaatcgccag
     6961 caacacactg atggtgttgg tcagcttgac gaacagactc ttttcatccg gaccgttgcc
     7021 acgcagaccc gcctgcacca gcgaaccttc aaagatgaca atcgagaagc ccatgatgaa
     7081 cgccgtcagc agcgagaaca gcggcaacat ttcatagctc tgccacaacg gatgcacctt
     7141 gtagcccgcc gagatcatca gtgaccccat tgaagactgg tgcatggtcg gcaacagcgc
     7201 gccaagtgca atgatgaaga acatcacctt gttcagacgc ttgagagaaa ccttccagcc
     7261 cagacgttca aacagtgccg gagcaaactc cagtgccatc acgccgatat agatggtcat
     7321 acagaccgcc gtctcgaaca gtaccgagtt cacgttgaag tgacccggaa tgtagaagta
     7381 cggcaggttc cagtagcgac ccacgtcgat agtgatcgac aagccaccca gtgagtaacc
     7441 aaacagactc gccaacagcg ccggacgcac cagcggatgg tattgcccac ggttaaagac
     7501 gtataccgcc cacgccagcg cccagccgcc acaggcaaag ccggtaccaa tcagcaggtc
     7561 aaacgcgatc cacacgcccc acgggaagcc gccgttcagg tcagagacag agcccagacc
     7621 gaacaccaga cgcttcacaa tcaggagcat acagatgacg attaacggtc caaaaatcat
     7681 gaccggttta ctgatgattt tgccgcccag cggttgtgga tcatgactca tgatcgtctc
     7741 ctccgtcgtg atggtcgttt ttggtgttgc gacgaaccag cacggttaag cccgccagca
     7801 cagccagtgg tagcatcatg cctttataca gggtgtgttg aatattttcg gaacgcgcac
     7861 cggtagaaag atcgtccagt ttcggcaggt cgagattttc ataaggcaca cccgtcagta
     7921 ccagaacctg agtaccgccg ccctctttct cgccgtacag atgcggataa tatttcggca
     7981 ccgtatgcag gtaagtgtcg ccagatttca gcgtctgacg cggatagtgg tattcgctgc
     8041 caggcttcag cgccagacgt tttttcgcct ccgccatcag ctcttcacgc gtaccgaaaa
     8101 tcaccgcgcc cgccgggcac acttctacgc agccaggcag accgccttta tcgagacgtt
     8161 ccacaccttt ctggttgcac agctcgcact tatgcagcgc accaaacggg ttgttgtagt
     8221 cgtacttcgg cacgttgtac ggacaggcga ccatgcagta acggcaaccg gtgcacacgt
     8281 ctttgtcgta atggacaatg ccggttttcg gatctttttt cagtgcagag accgggcaca
     8341 cagagacaca gttcggatcg acgcagtgca tacactgttt cttaatgtac gcgtagccgt
     8401 tctcctcctg gtctttgttg acccctgtgc cgctggtcca cacctgaatg atgttattgg
     8461 tatacggcga cagtttgtcg ttgttcgacc aggtctgttc cccttgcggg ttacgttcag
     8521 ggaagttgat atcctgacac ttggtgacgc aagcctggca gcctacgcac aaggtcgagt
     8581 cgtacaacat ccccagcgat cccggaattg gcgggcggtt ttcagcagcc gcatgactga
     8641 cagacggcag cgcgcccgtc agcaatgccc cgcaggaggc tgctttaata aaattacgtc
     8701 tgttcacggt tattctcccc gtgagtcagc gttatctttc ttttgctgac gacccagttc
     8761 acgcaccgcc atcacgctga caccggcaac cagcccaacc acaccgccga gcaaaccaat
     8821 agcgcctgca gagacgttac cgccctcttt agcgttaaca tccggtttct gtgaacgcgg
     8881 agtctgattt tcgacgttgg caagctgatg gatgccttta tggaagccga taccttcttc
     8941 gttacagcca tagcatgggt gaccaatcgc taccggccac acgccgccaa catcgcagaa
     9001 ttgcagcgtt gagcagttgc cgtaagtttc tggcccttta cagccgaggt ggtacaggca
     9061 ccagccttca cggtggcctt catcaccgaa ctctttggca aaacgaccag catcgaagtg
     9121 cgggcgacgt tcgcagtgtt cgtgaatcag acggccatag gcgaaggtcg gacgattttt
     9181 gtcatccagt ttcggcggtt tgccgtaagt gatgatgtgc gcaacggtcg cgaggaagtt
     9241 gtgcgggttc ggcgggcagc ccggaatatt gataacggtt ttgcctggca gaacttcttg
     9301 caggctgact gcgccagttg ggttaactcc agctgcggca acaccgcccc acgcagagca
     9361 ggaaccgata gcgataatcg ctgctgcgcc ttctgccgct ttgcggatgt gatccacaat
     9421 cggctcacca gcaaccatgc aataaatacc gttatctttt aatgggatgg aaccatccac
     9481 aaccaacaca tactgccctt tgtacttctc aagtgcgtta tgtttgttct cttcgacctg
     9541 atgaccgaag gcggcggaaa gcacttcgtg atactccaga gagatagtct ccagcacgag
     9601 gttttctacc gttggatgcg ttgcacgaag cagagattcc gtacaaccgg tgcactcctg
     9661 cgcgccaatc cagataactg gcggacgctg cgggttagta accgattcgg ccatctctgc
     9721 agcggctttg ctacttaacc ccatggtggc ggctaatgct gcacaaagct tcatgaaatc
     9781 acgacggtta atgccgtgag aatggatgag ggtgttatct ccagtcattt atagttattc
     9841 cgttgcgaag acctggcata tattttgcct caatcgcaaa atcaataatg cgatcgatgc
     9901 gccatttacc acacatttat tatggttatc gatatcatga tactgcggcg gggcgctaaa
     9961 acgaagggaa gaagcattag tgtaattaat taaagca
//
LOCUS       DAJVUY010000153         9972 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.153, whole genome shotgun sequence.
ACCESSION   DAJVUY010000153 DAJVUY010000000
VERSION     DAJVUY010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9972
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.153"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            163..420
                     /locus_tag="OQQ72_003408"
     CDS             163..420
                     /locus_tag="OQQ72_003408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000177060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013021.1"
                     /translation="MTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFP
                     LAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV"
     gene            complement(978..1745)
                     /gene="fecE"
                     /locus_tag="OQQ72_003409"
     CDS             complement(978..1745)
                     /gene="fecE"
                     /locus_tag="OQQ72_003409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter ATP-binding
                     protein FecE"
                     /protein_id="HCS2013022.1"
                     /translation="MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTL
                     LNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRN
                     PWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVV
                     LLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMA
                     QGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR"
     gene            complement(1746..2702)
                     /gene="fecD"
                     /locus_tag="OQQ72_003410"
     CDS             complement(1746..2702)
                     /gene="fecD"
                     /locus_tag="OQQ72_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter permease
                     subunit FecD"
                     /protein_id="HCS2013023.1"
                     /translation="MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHY
                     YVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLL
                     MPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR
                     PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLG
                     VSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTG
                     ALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR"
     gene            complement(2699..3697)
                     /gene="fecC"
                     /locus_tag="OQQ72_003411"
     CDS             complement(2699..3697)
                     /gene="fecC"
                     /locus_tag="OQQ72_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dicitrate ABC transporter permease FecC"
                     /protein_id="HCS2013024.1"
                     /translation="MTAIKHPMLLWGLPVAALIIIFWLSLFCYSAIPVSGADATRALL
                     PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAA
                     LAMALTSALSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALS
                     AFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQL
                     NLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAG
                     FDQRNVLPVSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRRG"
     gene            complement(3694..4596)
                     /gene="fecB"
                     /locus_tag="OQQ72_003412"
     CDS             complement(3694..4596)
                     /gene="fecB"
                     /locus_tag="OQQ72_003412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate ABC transporter
                     substrate-binding protein FecB"
                     /protein_id="HCS2013025.1"
                     /translation="MLAFIRFLFAGLLLVISHAFAAMVQDEHGTFTLEKTPQRIVVLE
                     LSFADALAAVDVSPIGIADDNDAKRILPEVRAHLKPWQSVGTRAQPSLEAIAALKPDL
                     IIADSSRHAGVYIALQQIAPVLLLKSRNETYAENLQSAAIIGEMVGKKREMQARLEQH
                     KERMAQWASQLPKGTRVAFGTSREQQFNLHTQETWTGSVLASLGLNVPAAMAGSSMPS
                     IGLEQLLAVNPAWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVASVDSNTWARMRG
                     IFAAERIAADTVKIFHHQPLTVVK"
     gene            complement(4641..6965)
                     /gene="fecA"
                     /locus_tag="OQQ72_003413"
     CDS             complement(4641..6965)
                     /gene="fecA"
                     /locus_tag="OQQ72_003413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) dicitrate transport protein FecA"
                     /protein_id="HCS2013026.1"
                     /translation="MTPLRVFRKTTPLVNAIRLSLLPLAGLSFSAFAAQVNIAPGSLD
                     KALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSW
                     TLEPAPAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRI
                     PGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPIS
                     LGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPK
                     ETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLL
                     QYYDGEADMPGGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGF
                     YTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYVNESTHE
                     MRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQ
                     NNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVE
                     PEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQAR
                     YDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYKPGNWTF
                     NLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKN
                     IFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF"
     gene            complement(7052..8005)
                     /gene="fecR"
                     /locus_tag="OQQ72_003414"
     CDS             complement(7052..8005)
                     /gene="fecR"
                     /locus_tag="OQQ72_003414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fec operon regulator FecR"
                     /protein_id="HCS2013027.1"
                     /translation="MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQ
                     DNQWAWQQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQSE
                     TGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTA
                     KDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNA
                     GESLQFSASEFGAVKPLDDESTSWTKDILSFSDKPLGEVIATLTRYRNGVLRCDPAVA
                     GLRLSGTFPLKNTDAILNVIAQTLPVKIQSITRYWINISPL"
     gene            complement(8002..8523)
                     /gene="fecI"
                     /locus_tag="OQQ72_003415"
     CDS             complement(8002..8523)
                     /gene="fecI"
                     /locus_tag="OQQ72_003415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FecI"
                     /protein_id="HCS2013028.1"
                     /translation="MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQD
                     TFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPE
                     ERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKA
                     VEHCLLFRLEYGL"
     gene            8821..9003
                     /locus_tag="OQQ72_003416"
                     /pseudo
     CDS             8821..9003
                     /locus_tag="OQQ72_003416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012767718.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            8997..9101
                     /locus_tag="OQQ72_003417"
                     /pseudo
     CDS             8997..9101
                     /locus_tag="OQQ72_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612091.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            9441..9698
                     /locus_tag="OQQ72_003418"
     CDS             9441..9698
                     /locus_tag="OQQ72_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm development YmgB/AriR family protein"
                     /protein_id="HCS2013029.1"
                     /translation="MHSDYYNMVFGEKLANILYEANSQFFYERNVIEEAVNALFCERE
                     IINNKNIIKKLMFFLSDVNHTKKDVVQSALNIIIDITSGDI"
BASE COUNT         2314 a         2657 c         2727 g         2274 t
ORIGIN      
        1 aatataatgg tgggttacca ccaaacgaat cagaaaaccg atactggaaa aactctaacg
       61 cggaggccag ttttagttga ccacaacaga ctacctgaag ggagccgcgg tcgcctagca
      121 gttgcagtag caggagatca tccagccgca gtacaggtca cgatgactct ggttaatgat
      181 accggctttg accccgtatt ttccggctct atcgctgaat catggcgtca gcagccgtgc
      241 acaccatcct attgttgtga ctgggaggct gccaccatgc ttcgcgcttt ccctctggcg
      301 aaaaagggag aaggacgggc ccgtctgcct tcactttatg ccagcttcgg taagctgggt
      361 gagacaccga ctcatgaaga tatcattgat aacaatcgat ccatcaactg gcctgtataa
      421 cgtggctgcc ggtgattaag aaagctgcac ctacctaagt agtagcaaac gcacactttt
      481 tagaaaaatc gatggtcaga aactggatta gcaattccgt tccagggttg cttttgattt
      541 acgttggcgt ctgatcattg atttatcctc aaaagcccaa cctcattggt aatgaaccag
      601 ctccgtgaat gtccgctctg gcacagagcg aaattttttg atctcccccc ctgaaatcta
      661 aacttagtca tgtcacgttt ttgggtttct aaaattttaa cttcgcgttt ttcgttgccg
      721 taagggttat acagaaatgt ccgttaagca gagttcaaaa ttgattgccg tgatcacgac
      781 tggtttgaaa gccgcgccca agcctgtaca gctctggttt gcgttgatta tgaacctgtc
      841 agcctaaagc aagcggatgg acgatgagta ttggtaatct ttcagagtcc ggaaaagttc
      901 agccccagtc tgaacaggct tgctggcgcc agtccagttt cattcagtcg tggtttggtt
      961 cttacggcct gtgcaatcta cctcattagg cacatcggcc tgccagatac cggctcgggg
     1021 tgtatttccg cttccacgct gaatactgtt ctcagcaatc ctggggtcat cacctcttct
     1081 ggtgtgcctt gcgccataac atgtccgttt gccattacca ccagttgatc gcagtaccgg
     1141 ctagcctgat taaggtcgtg cagcacagcg accaccgttt tcccctgagt ccggagttcg
     1201 cccatcaacc gcatcaggtc cacctggtga ttgatatcaa gataggtggt tggctcatca
     1261 agtaatacaa cgggcgtatt ctgggccagg accatcgcca gaaatgcgcg ctggcgctga
     1321 ccgccggaaa gctcggttaa ccgacgaacg gcaagatgat tgatccgggt ctggttcatg
     1381 gcgacattaa ctcgtgcatt gtcttcagcg gagagacgcc cccagagtga cagccaggga
     1441 ttacgaccat acgaaaccag ctcctggact gtgatcccct ctggcgttaa atggtgctga
     1501 ggcagcagcg aaagcctgcg ggccaactgg cgtgatgaga gcatatttat gggattatcg
     1561 ccgagaaata cggtgccaga ctgcggcatt aaaagccgcg aaaaacagtt taacagcgtc
     1621 gatttcccgc aaccgttagg gccgatcagg gcggtgatct tccccgttgg cagtgagagt
     1681 gaaacgtcgt taagtacctt gtctgtcccg taactgaccg tcagattttc agttcgtaaa
     1741 gtcatttatc gcattctcac aagcaaccag acaaaccacg gcgcaccgat aatggcggtc
     1801 agcacgccaa ccgggagctc cagtggggga tgaataattc tcgccagcag atcggcaacc
     1861 accaacagca acgcacctgt cagggctgaa acaggcagca gtctgcggtg acgtccaccg
     1921 gtgatgctac gcatcatatg cggcaccacg agaccaataa agctaatcgg gccgcaggcg
     1981 gccacgccgg tagatgtcat ggcgacagct agtaacaaag cccagaatcg ggtatggggc
     2041 accgacacac cgagcgtggt ggcgcgcgca tcgccgagtg caaggaggtc gagatcgcgg
     2101 caaaaactca ggctcagcgg cagaaataaa atcatcagcg ggatggcaat cttcacaaag
     2161 ctccagtcac ggccccataa gctgccggtc agccacagca gggcgttgtt cacatcctgc
     2221 gggcgcgaga gcatcagata atccgtcagg ctggcccagc atgcagaaag cgccacgccg
     2281 gtgagcgcca gcttcatcgg ctggtgggtc tttgccagca tcttcagtaa tatcaacccc
     2341 gccatgccgc ccgcaaaggc cagcagcggc agcaccatca cgggcagtga cggcataaga
     2401 agtagagccc ccacagaggc caggctggcg gcatggttaa cgccgagaat atccggtgat
     2461 gccagagggt tgcgcacaat cccctgtatc agcacgcccg ccacggcgag ggctgcaccg
     2521 acaaacagtg ccagcagcaa gcgcggcagt cggtactcca tcaatacata ataatgctcg
     2581 cgtccggcct gccagtcggt cagcagcgcg cgccacggca cggggatcac tcccatatgg
     2641 agtgataaca gcgcacagcc cgccagggca agggtgatga aaataaccag cgcaattttc
     2701 atcctcgcct cctcacaagc cagacaaagc aagggctgcc aatcagcgcc agcactgcgc
     2761 ctgcgggcag atctccgggg aaggccagcg cgcgtgcgag tacatctgcc agcagcatca
     2821 gcgtggcccc cagcagcatg ctcactggca gtacgttgcg ctgatcgaag cctgcccaga
     2881 agcgcgccag atgtggcacc agcagaccga taaacgccac cggacctgcc acgctgacgc
     2941 acgcaccaac cagaagcagc actaacatat tgatgaccaa acgtagcctc gtcaggttca
     3001 ctcccagcgt atgggcggtg ctgtcgctga ggttgagcag gttcagttga ttcgccagca
     3061 gtaacacgac agggactgca gtgaccacca ccggcaagag ctgccagaca tcctgccagc
     3121 gggcgtggga cactccgcct gccagccagt aaaagatgcc gtaagcatga tcttcggcca
     3181 gcagcagggt gatgcgggta aggcccatac aaaaggccga cagcgcgata cccgcgagga
     3241 tcagtttgtt tctgtcatgg gtatgacgaa atccgcctcc tgcggtcatg accagcagcc
     3301 agctcacgcc gcccccgcat gccgcgatga acgacagaga atagcctgca atcggcgtcg
     3361 gactcagcgc gctggtaagc gccatagcca gcgccgcgcc gctgttaatg ccgagcagtg
     3421 aaggagaggc cattgggttg tgggtcaggg tttgcagcag cgtgcccgcg agcgccaggc
     3481 ttgcgccgat cagaacggcg accaggcttc gtggcaaacg aaggttttgc accagcgctt
     3541 ctggtagcgt tggcgtgtgt ccaggcagca gggcgcgggt tgcatctgct ccggaaacag
     3601 gaatggccga gtagcaaaac agactcagcc agaaaataat aataagtgct gcaacgggaa
     3661 gcccccacag cagcatcggg tgttttatcg cggtcatttc acaacggtaa gcggctgatg
     3721 gtggaagatt tttaccgtgt cagcggcaat acgctctgca gcaaaaatac cgcgcatccg
     3781 cgcccaggtg ttactgtcga ccgaagcaac ctgctgcttc tgcgcggcgg ttaacatctg
     3841 ccagagcgga tcttgttgcc agcgtttaac aatgctctct tcgcgatagt gggcaaccag
     3901 cagccaggca ggattgaccg ccagcagttg ctccaggccg atggacggca tggacgaacc
     3961 cgccatcgca gcgggaacgt tcagccccag agaggccagc acgctgccgg tccaggtctc
     4021 ctgagtatgc aggttgaatt gctgttcgcg tgatgtgcca aaggccacgc gtgtcccttt
     4081 gggaagctgg ctggcccact gcgccatcct ctctttatgt tgttccagac gtgcctgcat
     4141 ctctcgcttt ttacccacca tttcgccgat gatagccgca gattgcaaat tttcagcgta
     4201 ggtttcgttg cgggacttaa gcagcagtac cggcgcgatt tgctgcaagg cgatgtaaac
     4261 ccccgcatgg cgactgctgt cggcaatgat caggtctggt ttcagagcgg caatggcttc
     4321 caggctcggc tgcgcgcgcg ttccgacgga ctgccacggt ttcaggtgcg cacgcacttc
     4381 gggcaggatg cgttttgcat cgttatcgtc ggcaataccg atcgggctga cgtccacggc
     4441 ggccagcgca tcggcgaacg agagttccag caccacaatc cgttgtggcg ttttttcgag
     4501 tgtaaacgtg ccgtgttcgt cctgaaccat ggcggcaaag gcgtggctga tcaccagcag
     4561 caggcctgca aaaagaaaac ggataaatgc caacataatc acattccagc taaaagcccg
     4621 gcaagccggg cgttaacaca tcagaacttc aacgacccct gcatatacag cgtgcgcggc
     4681 tggcctgcat agatgccttt gttgttgtcg tcataagagc ggatgaagta gtcctggtcg
     4741 aagatgtttt tcacaccgaa tgccaggttc agatctgcca tctgcgggcc aaagtcatac
     4801 gccacgcgtg caccccagag catgaagccg ggaatgcggc cggtactgcc gtcggcgctc
     4861 tctttcaccg tattggcgtt atccgcaaac tggctggact ggaaatcgct gttcagattg
     4921 aacgtccagt ttcctggctt gtagtccacg cccagcgtgc ctttatgttt cggggagaat
     4981 ggtaccagat tgccgtaggt gtcgcctttc tcgcggattt ccgcgttcac atacgcatag
     5041 ctggcgtaga tggaaacgtt atcaagcgtt ggcgttagcg tacccagatc gtaacgtgcc
     5101 tgcgtttcca gcccggtatg gcgcgttttg ccacgtgcag tgacggtgtc gttggtctgg
     5161 ttggagtcgt actgattgtt aaagttaatc aggaacagcc ccatttccgc cgtcagcgcg
     5221 ccgtcgtcgt agcgggtacc gagttcccag gttcgcgctt tttccggttc cacattgccg
     5281 ctttgcacag ccttgccaat ctggctgtac tgtacggtgc cgaacgagcc ttcagtgttt
     5341 gcataaagat tccagctgtc agtcaggtga tagagcacgt tcaacgccgg aagcggtgcg
     5401 ttatagctca cttcttcgtg cgtgcctgtg atggcgttgt tctggtatga ctcgatatgt
     5461 tcgaaacgca tacccggcgt gatggtccag ttgccgatgt cgattttgtc atccagatac
     5521 caggcgtgcg cctcggtgcc ggaacgcgta tcgcggtcgt aagggcttga gccggacggc
     5581 aactgcccgc tgctggtggc ggtgtagtaa cgcatttcat gcgttgattc attcacatag
     5641 cgatagccca cgcccacttc gtgcgcggaa gggccgatca taaagatctg gctgtagcgt
     5701 ggctcaatac cgcgcaccca gtagttacgc ggcgagaggg tgatgcgttt gccttgctcc
     5761 aggtagccgc tgcgcagggt ttgggtgtag aacccctgaa tgttgaattt atgctggctg
     5821 tctggctgga actggtagcc caggctcgcc agcttgcgac gaccccagaa gcggtcatac
     5881 gggcgggtgg attgccagcg atcggcgtcg taatccgcgc gagacaggcc accgggcatg
     5941 tcggcttcac cgtcgtaata ttgcagcagg ctgttgaagg tgtgcacctc atccggcgca
     6001 tatttgcttt tcagcatcag gtcgtcgatg cgggtggcgc tgtgctcgcg ccagtcactg
     6061 ccgcgcgtgc cggagtagag cagcgcggtg ccaaaaccgt tgtccgctgt gccgcccacc
     6121 atcaggttgt gcgtctcttt cgggttgttt tgtgaagagg ttgggctgag ctgaccttcc
     6181 acgcccgcct cgataccaaa gtcctgcgga atggcacggg taacaaagtt caccacgccg
     6241 cccacgctct gcggtccgta acgcaccgca ccaccaccgc gtaccacgtc aatggcatcc
     6301 atgttgccga gcgaaatggg agccagtgaa agctgcggct gaccgtaagg ggcgaagggg
     6361 acggggatgc cgtccatcag gacggtcgag cggctggcga ggcgcgggtt caggccccgg
     6421 atgccaaagt tcatcgccag gtcgtggctg ccggtgccgt tgttttccgg cgcgctgacg
     6481 ccagggatgc ggttaagtac ctcacgcatg gtggttgcgc cggttttggc gaaatcctca
     6541 cggcggatca cgtcacgcgc gccagcatgt tcaaatacgt cgttttcacg cgcatcaccc
     6601 agccagtcgc cgaccacggt cagggcatct tcttttggtg cgggcgcggg ctccagcgtc
     6661 cagctgttat ttcccagcgg ttttacctgc agtccgctgc cgtccagcag ttgttgcagg
     6721 ccgctctcga cgtcgtaatc gccgtgcagg ccgttgctct gcttgccgcg cgtcaggctg
     6781 gcgtcaaccg agagggtaaa tccgctgtgt gcggcatact gattgagcgc tttatcgagc
     6841 gatcccggtg cgatattaac ctgtgcagca aaagcggaaa acgagagacc ggccagcggc
     6901 agcaggctca ggcgaatggc gttaaccaaa ggtgttgttt tacgaaaaac gcgtaacggc
     6961 gtcatacctt ccccatcatc atttttgttg tgttcagcta tgagtcgaac gagaagggta
     7021 aaaaggacaa tcgaaataag aattattttc cttacagtgg tgaaatgttt atccagtacc
     7081 gcgtaataga ctgaatttta acgggaagcg tttgcgcgat aacgttcagg atcgcatcgg
     7141 tatttttcag cgggaacgtc ccgctcaggc gcagcccggc aacggcggga tcgcagcgca
     7201 gcacgccgtt gcggtaacgg gttagcgtgg ctatcacctc acccagcggt ttatcgctga
     7261 agctcaggat gtccttcgtc cagcttgtac tctcgtcatc cagcggtttc actgcgccaa
     7321 actcagaggc gctgaactgc aggctttcac cagcgttcac gatgcgtttt tgcgcggggg
     7381 cactggcgag aagcacttcc acagcgtgct gctgaacgtc aagctgcgtg aaattatcct
     7441 gctggcggac ggtaaattct gtccctaaag cagtgagctg gccctgacgg gtcaggacac
     7501 ggaaggggcg ttgcagggca tctttcgcgg tagtaatggc gatttcaccg taccagagcc
     7561 ggacggtgcg ctgatgcgca tcaaaacgca catccgccgc gctttgggta ttcagcgtga
     7621 gcagggagcc atcttccagt tgctgacggc tgactgtgcc tttggcggtg cggtaatctg
     7681 cccgcagacc ttcgccggtt tccgactgcc agagctgcca gcctccgcca gcgccgagca
     7741 acagcagtaa tcctttcatc acgtgacggc gggtgaggcg ggtatcgtgc aacgcccggc
     7801 tggcaacgtc gccaggcaca ccgccaagct ggttgcgcag gttttcaacc tgctgccagg
     7861 cccactggtt atcctgatcc tgttcatacc actgttgcca gcgcgcttcc tgttgtgggc
     7921 tgacgcgctc gccgcttagc acggcatacc agtgggaagc tgaacgcagc gcctgacggc
     7981 gggaatcggt taacaaagga ttcataaccc atactccaga cggaacagca ggcagtgctc
     8041 gacggctttc gccacgtatt ttttcacgga gctgatggaa acaccgagtt tgtgcgcaat
     8101 ctcgctgtat gtcagaccat ccagttgcga aagcagaaac gcttcacgtg ttttgccgtt
     8161 tagcccgtcc agcatgctgt cgaggagttg tagggtctcg agttggcttt cgcgttcctc
     8221 aggtgaaggc gctcccccct ccggcataag cgccagcatc tccagatacg ctttttccag
     8281 cgcgtttcgg cgaaacaggt ccaccatcac gcgtttggcg atagtgcaga ggaaggagcg
     8341 aggatcgcgg atcgtcgaga gcgtttcgct gaccattacc cgcaaaaaag tgtcctgggc
     8401 aatgtcatct gcatcaaaag cagactggag tttgcgcgtc agccagcttt tcaaccagcc
     8461 gtgatgtgtg ccataaagcg actcgaacgt taaggaagct gtggtagtgg cgcggtcaga
     8521 catgcggagt gcatcaaaag ttaattatca cgtagtcata ttaatatgag aatggttatc
     8581 attacaattg gaaataaaat tgtttccaat agacattttt aacatgttgt ttttctaagt
     8641 gttataaggt aggtataaaa tgggatggag cctctgcttc tgacatgtgt cggtcagaat
     8701 gactcatgat gtggtctgct attattgaca tcctcactgc cctaaaggat ggggatttcg
     8761 gtaatgatct tacccagcaa tagtggacac gcggctaagt gagtaaactc tcagtcagag
     8821 gtgactcaca agacaaaaca gtttcaacca gtaaaaaaac gtaaacacca ttcgcatgaa
     8881 tttcgtagtt aagatctgaa gcttgcagaa tgcatcggtg ttactgccgg agtccgtgaa
     8941 cttagtctgc atgaatcacc acagctttac atctgtcgca gtaaacagca aaatcagcaa
     9001 acttacttaa ttatatcgag tgcgattaca atcgctggcg atggtacagt tggtgtggcg
     9061 gtctcagtcc ggaacaattt gaaaatcata atctcactta aaacggcatc cattttacaa
     9121 aagatggccg tctgtgtatt tgtaatgaat accttctaca tgtttagagt gcataatcca
     9181 cgacaaggcg atatcctaaa aattagctag caggcaactt tgatggcata gataatgttt
     9241 ttagtaaaaa agagttgact gaatataata cagcctcttc ctacataaga aggaatgtgc
     9301 tcacaaaaaa aaaccattag tctgcttcct gttcttacaa taatcagtat tatgtatttt
     9361 atttatatag caaaatatgc ttgttacacc tgtcataatt aggcatggta aaattattga
     9421 ctgaaccctg ggggagaaag atgcacagtg attattataa tatggttttt ggtgaaaaat
     9481 tggccaatat tttatatgaa gctaactctc aattttttta cgagagaaat gtcatagaag
     9541 aggcagtcaa cgctttattc tgtgagcgtg aaataataaa caacaagaac ataataaaga
     9601 agctgatgtt ctttttgtca gatgttaatc acaccaagaa agatgttgtt cagagcgcac
     9661 ttaatattat cattgacatt acatcaggtg atatttgaga ttttacataa aagataatct
     9721 ctcaaggagt cttatctgaa aacgaaatat atagtccctc tcgttttgta atatcgattg
     9781 gctttgttga atcggttacg taccccggag ccggtcatat tttcaggtaa tacacacgct
     9841 ttcagacatt tcggctttcg tcatttttgt atcatgggca tagcttctgc tacctgacca
     9901 tcataatcac gcagcttcag tgaagcagtg accacctgtt taacccggtg tatcgttatg
     9961 atcttatcca gc
//
LOCUS       DAJVUY010000154         9957 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.154, whole genome shotgun sequence.
ACCESSION   DAJVUY010000154 DAJVUY010000000
VERSION     DAJVUY010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9957
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.154"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            259..456
                     /locus_tag="OQQ72_003419"
     CDS             259..456
                     /locus_tag="OQQ72_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013030.1"
                     /translation="MEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSK
                     VMIISLFDSTVMPDKYRHNGK"
     gene            complement(406..1599)
                     /locus_tag="OQQ72_003420"
     CDS             complement(406..1599)
                     /locus_tag="OQQ72_003420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013031.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            1735..3459
                     /gene="iucA"
                     /locus_tag="OQQ72_003421"
     CDS             1735..3459
                     /gene="iucA"
                     /locus_tag="OQQ72_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HCS2013032.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3460..4407
                     /gene="iucB"
                     /locus_tag="OQQ72_003422"
     CDS             3460..4407
                     /gene="iucB"
                     /locus_tag="OQQ72_003422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HCS2013033.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4407..6149
                     /gene="iucC"
                     /locus_tag="OQQ72_003423"
     CDS             4407..6149
                     /gene="iucC"
                     /locus_tag="OQQ72_003423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HCS2013034.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6146..7483
                     /gene="iucD"
                     /locus_tag="OQQ72_003424"
     CDS             6146..7483
                     /gene="iucD"
                     /locus_tag="OQQ72_003424"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HCS2013035.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVITLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7489..9684
                     /gene="iutA"
                     /locus_tag="OQQ72_003425"
     CDS             7489..9684
                     /gene="iutA"
                     /locus_tag="OQQ72_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HCS2013036.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2395 a         2564 c         2646 g         2352 t
ORIGIN      
        1 cataaaaaac atgtcagtga aaaagaaacc tggcgttggg ttgaaggata taataaagca
       61 acagaactgg ctcgccaatg ccctgatacc catgtattgt caatttctga tcgtgaaggc
      121 gatttttatg acctgtttga acgcgcagag cagactcccg gaataaaagc tgactggctt
      181 gtcagaatga aatttaataa cagagcaacg ctgaatatta atggtaaacg ggatcatagg
      241 ttgttgcacg aaagaatcat ggagattaca ccgcagcaac tggttgaatt cactatacct
      301 gatgggcggg ggcagcaagc cagaacactg cctgacatgc tttcatcaga cgcaggtcct
      361 ctctcatatc ctctgattta ctccagtaag gtgatgatca tatctttatt tgatagtacg
      421 gtaatgccag ataaatacag acacaatggt aaataatata gttgcaaata atgctgccat
      481 aatcagcgcg attgcgacac ctgttttcga taccagcggc accagcaaag cgcacagtcc
      541 atagccaagt gtgtgactgg tagcgagcca gcccgcgcct gcgccatcag ccagcttatc
      601 attcagtaga agttgataag cgggtgttgc cagagctgct ccaaatgaca gcactgcaca
      661 gcccgggtaa aacaaccata gctgttcgga gagcatgata gccagaccac cactcatcaa
      721 cactccggca ctcaggagca gggccaccgg agtcaggcgc tgcggacgga ctaccccgaa
      781 ctgcgcgata agcgcagcta ctgcggacag acccaacagc caggccacct gttggctaat
      841 ggcggtggta tccgtgacga actggcgagt aagggcaggc gaaagtccaa gctgcatcat
      901 gctcaccgcc gcagccagta atattgcgca aagcagataa ggcagacaat cccgcttcag
      961 actgacgctc ttgcactccg gtgtgggctg tggtggtgtg ccgggcaacc gcagcagcat
     1021 cagcagcgcc agcactggtg ctgccatcag tagccccagt ggcgccagag gatgaatggc
     1081 cagcattgct gccgcgcaca gcggcccgaa tagcctgccg caactcaggc cggagctgat
     1141 ggttgccaga gcggccatgc gattcccttc tccagctctc tgcaatgccc agacctgaca
     1201 ggctggcacc attgccgaca cggtcagccc gtaggcgatc cgggcgatga ttaatattcc
     1261 cagtcccacc gctgttgtta tggcgctggt agccatcagc acgcttccca gccctagcag
     1321 ggtaaagctt atgccatatc ctcccagagc ccacaacacc acaggtttac tgccagtacg
     1381 ggaaatttgc tttccccacc acggggacga tggcagaaac agcattgagc caagcatcag
     1441 cagggcagcc catacagaca gactcagatt tgtctgtatg accagaacag ggagcacaac
     1501 cagcagaccg ttctgtccga taccgagaag cccggcactg aacgcaagtg gccagcagga
     1561 cagtgttttt tggggcgtat cttcgatccc tggtgacatt ataatgcttc aactccatgt
     1621 attaattgtg tttatttgta aaattaattt atctgacaat aacatttatt gttgataatg
     1681 agaatcatta tcgacataat tgttattatt ttactgtgtg ggagctgttt gactatgacc
     1741 ctgccctctg aaaaaccagc cacagatgtg gctgcgcagt gcttcctgaa tgcactgatt
     1801 cgtgaaacca cagactggaa actgacagaa tacccgccag acgaattgct catcccgctg
     1861 gatgagcaga aatcgctcca tttcagagtg gcttatttct ccccaaccca gcatcaccgc
     1921 tttgcatttc ctgcacgtct ggtcacggca tcaggcagtt atcctgtcga ctttaccact
     1981 ctctcccggc ttattattga taagctacgc catcaactgt ttctgcccgt tcccctctgc
     2041 gaaactttcc accagcgcgt gctggaaagc catgtccata cgcaacaggc aattgatgcc
     2101 cgtcatgact gggccgctct gcgtgaaaaa gcgttgaatt ttggcgaggc tgagcaggcg
     2161 ctgctgacag gacacgcttt ccaccctgcg cctaagtctc atgaaccgtt taaccggcgg
     2221 gaggctgaac gctacctgcc tgatatggca ccccacttcc cactgcggtg gttttcggtg
     2281 gataaaacgc aaatcgccgg tgaaagtttg catctcaacc ttcaacagcg gctgacgcga
     2341 tttgccgcag agaatgcgcc tcagttactc aacgaattaa gtgacaacca atggctgttc
     2401 ccgttgcacc cgtggcaggg ggaatatctt ttgcagcagg ggtggtgcca ggcacttgtt
     2461 gctaaagggc tgattaaaga cttaggtgag gccggcacgt cgtggctgcc gaccacctct
     2521 tcccgttccc tctactgtgc caccagccgc gatatgatca agttctccct gagcgtacgg
     2581 ctgaccaact ccatccgtac tctgtccgtg aaagaagtga agcgtgggat gcgcctggca
     2641 cgcctggctc aaaccgacgg ctggcagatg ctacaggtcc gcttcccgac tttccgggta
     2701 atgcaggagg atggctgggc cgggctgctc gatcttaacg gcaacatcat gcaggaaagt
     2761 ctgtttgccc tgcgtgaaaa tctgctggtg gatcagccga aaagccagac taacgtactg
     2821 gtctccctga ctcaggccgc acctgatggc ggtgattcgc tgctggtttc ggcggtaaaa
     2881 cgcctgagcg atcgcctcgg tatcactgtg caacaggccg cccatgcatg ggtcgatgca
     2941 tactgtcagc aagtgctaaa gccgctgttt acggctgaag cggattacgg cctggtgctg
     3001 ctggcgcatc agcaaaatat tcttgtccag atgcttgggg atctgccggt cggatttatt
     3061 taccgtgact gtcagggcag cgcttttatg cctcacgcga cagactggct cgattctatt
     3121 ggcgaggcgc aggcggaaaa tattttcacc catgagcagt tgctgcgcta tttcccttat
     3181 tacctgctgg ttaactccac ttttgctgtg accgctgcgc tgggggctgc cgggctggac
     3241 agcgaatcga atctgatggc tcgtgtacga gcatcgctgg ctgaagtgcg tgatcaggtg
     3301 actcataaaa cctgtctcaa ctacgtgctg gaaagtccgt actggaacgt aaaaggtaac
     3361 tttttctgtt atctgaacga tcataacgag aacaccattg ttgacccttc ggtgatctat
     3421 ttcgatttcg ctaacccgct gcaggctcag gaggtctgaa tgtctgaggc aaacattatt
     3481 cacagcagat atggactgcg ctgtgaaaaa ctcgacaagc ccctgaatct tggctgggga
     3541 ctggacaata gcgcggtgtt gcactgtccc ggggagctgc cgacagggtg gctgtgcgat
     3601 gcgctggatc agatatttat cgccgcacca caactgtcag cagtggctct cccctgggcc
     3661 gaatggcgtg aggagccaca ggcgctgacg ctttttgggc aggtaaaaag cgacattatc
     3721 catcgtactg ccttctggca gttaccgtta tggttgagtt caccggcaaa ccgggcctcc
     3781 ggtgaaatgg tttttgatgc agagcgtgag atttatttcc cgcagcgccc accccgtcca
     3841 cagggtgagg tttaccgccg ttacgatcca cgtattcgca ggatgctgag tttccgcatt
     3901 gccgatcccg tttctgatgc agaacgtttc acccgctgga tgaatgatcc gcgcgttgag
     3961 tatttctggg agcaaagtgg ctcactggag gtacagaccg cctatctgga gcgccagctc
     4021 accggtaaac atgcattccc gctgattggg tgcttcgacg atcggccatt cagctatttc
     4081 gaaatctact gggcggcgga agaccgcatt ggtcgtcact attcgtggca gccctttgac
     4141 cgtggcctgc atctgctggt tggtgaacag caatggcgcg gggcccacta tgtgcaaagc
     4201 tggctgcgcg ggctgacaca ttacctgctg ctggatgagc cccgtacgca gcgcacagta
     4261 ctggagccac gcaccgataa ccagcgcctg ttccgccatc ttgagcctgc gggataccgg
     4321 acaattaaag agttcgactt cccacataag cgctcgcgca tggtgatggc ggatcgtcat
     4381 cacttcttca cggaggtcgg tctgtaatga atcacaagga ctgggatttt gttaaccgtc
     4441 ggctggtggc aaaaatgttg tctgagatgg agtatgagca ggttttccac gcggaatctc
     4501 agggcgatga ccactactgc attaacctgc cgggagcaca atggcgcttc atcgctgaac
     4561 gtggtatctg gggctggctg tggattgatg cccaaacgtt gcgctgcacg gacgaaccag
     4621 tactggcgca gacgctgctg atgcagctaa agccggtgct gtcaatgagt gatgccactg
     4681 ttgcagagca tatgcaggat ttgtatgcca cgctactggg cgacctgcaa ctgctgaagg
     4741 cccgtcgcgg actgagtgcc agtgacctga ttaatcttga tgccgatcgt ctgcaatgcc
     4801 tgctgagcgg tcatcctaaa ttcgttttta ataaaggtcg ccgtggctgg ggcaaagagg
     4861 cgctggaacg atatgcgcca gagtatacca acaccttcag actgcactgg ctggcggtaa
     4921 aacgtgaaca tatgatctgg cgctgcgata acgatctgga tattcagcag ttgttgactg
     4981 ccgcaatgga tccgcaggag tttacacgct tcagtcaggt ctggcaggaa aacgggctgg
     5041 atcacaactg gctaccgctg ccggtacatc cgtggcagtg gcagcaaaaa atcgccacag
     5101 acttcatcgc tgattttgtc gaaggcagga tggtgtctct cggcgagttt ggcgaccagt
     5161 ggctcgccca gcagtcgctg cgtaccctga ccaacgccag ccgccgggga gggctggata
     5221 tcaagctgcc gctgaccatc tacaacacct catgctaccg ggggatccct ggcagatata
     5281 tcgctgccgg accactggct tcacgctggc tgcaacaggt ttttgcgacc gacgccaccc
     5341 tggtgcaaag cggcgcagtg atccttggtg aaccggcggc aggctatgtg tcccatgaag
     5401 gctatgccgc gcttgcccgg gctccctatc gctaccagga aatgcttggt gttatctggc
     5461 gggagaatcc gtgccgctgg ctgaaaccgg atgaaagtcc tgttctgatg gcaacactga
     5521 tggagtgcga cgaaaacaat cagccgctgg caggcgcata tatcgaccgc tccggactgg
     5581 acgctgaaac ctggcttacg caattgttcc gggtggttgt ggttccgctg tatcacctgc
     5641 tttgccgcta cggtgtcgcg cttattgcac acggacaaaa tataacgctc gccatgaaag
     5701 agggggtacc acagcgtgtt ctgctgaaag acttccaggg cgatatgcgg ctggtgaaag
     5761 aagcgtttcc cgaaatggat tctttgcctc aggaggtgcg tgatgccaca tcccgtctga
     5821 gtgcggacta cttaatccat gatttgcaga cgggtcactt cgtgacagta ctgcgtttta
     5881 tttcgccact gatggttcgt cttggcgtac ctgaaaggcg attttatcaa ctgctggcag
     5941 cagtgttgag tgattacatg aacaaacatc cacaaatggc agagcgtttt gcgcttttct
     6001 cactcttcag gccacaaatc attcgcgtgg tgctgaaccc ggtaaaactg acctggccgg
     6061 acctggatgg cggcagtcgc atgctgccga attaccttga gaatctgcaa aatccgctgt
     6121 ggctggtaac tcaggaatat gaatcatgaa aaaaagtgtc gattttattg gtgtcgggac
     6181 agggccattt aatctcagca ttgctgcatt gtcacatcag atcgaagaac tgaactgtct
     6241 cttctttgac gaacatcctc atttttcctg gcatccgggt atgctggtac cggattgtca
     6301 tatgcagacc gtctttctga aagatctggt cagtgcagtt gcacctacaa atccctacag
     6361 ctttgttaac tatctggtga agcacaaaaa gttctatcgc ttccttacaa gcaggctacg
     6421 tacagtatcc cgtgaagagt tttctgacta tctccgctgg gctgctgaag atatgaataa
     6481 cctgtatttc agtcataccg ttgaaaatat tgatttcgac aaaaaaagtc gattgtttct
     6541 ggttcagacc agtcggggag aatattttgc ccgcaatatc tgccttggta caggaaaaca
     6601 accttattta ccaccctgtg tgaagcatgt gacacaatcc tgtttccatg ccagtgaaat
     6661 gaatcttcgt cggccggacc tgagtggaaa acggataacc gtggttggtg gaggacagag
     6721 tggtgcagac ctgttcctta atgcattacg cggggaatgg ggagaagcgg cggaaataaa
     6781 ctgggtctca cggcgtaata attttaacgc actggatgag gctgcttttg ctgatgagta
     6841 ttttacacct gaatatattt caggcttctc cggactgaag gaagatattc gccatcagtt
     6901 actggatgag cagaaaatga catcggatgg catcactgcc gattctttac tgaccattta
     6961 tcgtgagttg taccaccgtt ttgaagttct gagaaaacca agaaatatcc gtctgctacc
     7021 cagtcgctcg gtaataactc tggaaagtag tggtccgggc tggaggttat tgatggaaca
     7081 tcatctggat cagggcagag agagcctgga aagtgatgtg gtgattttcg ccacaggtta
     7141 ccgttctgca ttgccacaaa tacttccctc actgatgccc ttgatcacca tgcacgataa
     7201 gaacaccttt aaagtgcgtg atgacttcac tctggaatgg agtggcccga aagaaaataa
     7261 catctttgcg gtcaacgcca gcatgcaaac tcatggcatc gccgaacccc agctcagcct
     7321 gatggcctgg cgatctgcac gtattcttaa tcgcgtactg gggcgtgatt tattcgatct
     7381 cagtatgccg cccgcactga ttcagtggcg cagcggcagc cggaaaaaac cgcagccgga
     7441 ggctgcttct ttaactcact atacagcaaa tattcaggaa taacgatgat gcgcaaaaag
     7501 tatatgcccc gggctcttgg tccgctgctt cttgtcgtgc tgtcaccagc tgtcgcccag
     7561 caaaatgatg ataatgagat catagtgtct gccagccgca gcaatcgaac tgtagcggag
     7621 atggcgcaaa ccacttgggt tatcgaaaat gccgaactgg agcagcagat tcagggcggt
     7681 aaagagctga aagacgcact ggctcagtta atccccggcc ttgatgtcag cagccagagt
     7741 cgaaccaact acggtatgaa catgcgtggc cgcccgctgg ttgtcctgat tgacggtgtg
     7801 cgcctcaact cttcacgttc cgacagccga caactggact ctgtcgatcc ttttaatatc
     7861 gaccatattg aagtgatctc cggcgcgacg gccctgtacg gtggcgggag taccggaggg
     7921 ttgatcaaca tcgtgaccaa aaaaggtcag ccggaaacca tgatggagtt tgaggctggc
     7981 acaaaaagtg gctttaacag cagtaaagat cacgatgagc gcattgccgg tgctgtctcc
     8041 ggcggaaatg accatatctc cggacgtctt tccgtggcat atcagaaatt tggcggctgg
     8101 tttgacggta acggcgatgc caccctgctt gataacaccc agaccggcct gcagcactcc
     8161 aatcggctgg acatcatggg aaccggtacg ctgaacatcg atgaatcccg gcagcttcaa
     8221 ctgataacgc agtactataa aagtcaggga gacgacaatt acgggcttaa tctcgggaaa
     8281 ggcttttccg ccatcagcgg gagcagcaca ccatacgtca gtaaggggct gaattctgac
     8341 cgcattcccg gcactgagcg gcatttgatc agcctgcagt actctgacag tgatttcctg
     8401 ggacaggaac tggtcggtca ggtttactac cgcgatgagt cgttgcggta ctacccgttc
     8461 ccgacggtaa atgcgaataa acaggcgacg gctttctcct cgtcacagca ggataccgac
     8521 cagtacggca tgaaactgac tctgaacagc caactgatgg acggctggca aatcacctgg
     8581 gggctggatg ctgagcatga gcgctttacc tccaaccaga tgttcttcga tctggctcag
     8641 gcaagtgctt ccggagggct gaacaaccat aagatttaca ccaccgggcg ctatccgtca
     8701 tatgacatca ccaatctggc ggccttcctg caatccagct atgacattaa tgatattttt
     8761 accgttagcg gtggcgtacg ctatcagtat actgagaaca gggtagatga tttcatcgac
     8821 tacacgcagc aacagaagat tgctgccggg aaggcgatat ctgccgacgc cattcctggt
     8881 ggttcggtag attacgataa ctttctgttc aatgctggtc tgctgatgca catcaccgaa
     8941 cgtcagcagg catggttcaa tttttcccag ggggtggcat tgccggatcc ggggaaatat
     9001 tatggtcgcg gcatctatgg tgcagcagtg aacggccatc tttccctgac aaagagcgtg
     9061 aacgtcagcg acagtaagct ggaaggcgtg aaagtcgatt cttatgaact gggctggcgc
     9121 tttaccggtg acaacctgcg gactcaaatc gcggcatatt actcgctttc caataagagc
     9181 gtggaaagga ataaagatct gaccatcagt gtgaaggacg acaggcgccg tatttacggc
     9241 gtggaaggtg cggtggacta cctgatcccg gatactgact ggagtaccgg tgtgaacttc
     9301 aatgtgctga aaaccgagtc gaaagtgaac ggtcaatggc aaaaatatga cgtgaaggaa
     9361 tcaagtccat cgaaagcgac agcttacatt aactgggcgc cggaaccgtg gagtctgcgt
     9421 gtacagagca ccacttcttt cgacgtaagc gatgcagagg gtaacgatat taatggttac
     9481 actaccgtcg attttatcag tagttggcag cttccggtgg gaacactcag cttcagcgtt
     9541 gagaacctct tcgaccgtga ctataccact gtctggggac agcgtgcacc tctgtactac
     9601 agcccgggtt acggccctgc ttcactgtac gactacaaag gccggggccg aacctttggt
     9661 ctgaactact cagtgctgtt ctgacgggga tgcttttgca acaagggtat gctgtaaaca
     9721 acatggtcct tggtggccat gttgtttaca gccagtataa tatacagcct taacaagata
     9781 ttccgtctcc ggaatggact gttcaccact gaataacatt atttctgttt tatggatctt
     9841 tgactgaaat ttatcgcata tcctcatttc attgtccgtc tgaaaactaa ccttacaagt
     9901 aagcgtcgtc tcagcaccgt ctggcagatc ctgaaattcc tgagaggatg atctgcg
//
LOCUS       DAJVUY010000155         9895 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.155, whole genome shotgun sequence.
ACCESSION   DAJVUY010000155 DAJVUY010000000
VERSION     DAJVUY010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9895
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.155"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ72_003426"
     CDS             complement(55..1338)
                     /gene="aroA"
                     /locus_tag="OQQ72_003426"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCS2013037.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ72_003427"
     CDS             complement(1409..2497)
                     /gene="serC"
                     /locus_tag="OQQ72_003427"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCS2013038.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(2696..3388)
                     /locus_tag="OQQ72_003428"
     CDS             complement(2696..3388)
                     /locus_tag="OQQ72_003428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HCS2013039.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            3518..5278
                     /locus_tag="OQQ72_003429"
     CDS             3518..5278
                     /locus_tag="OQQ72_003429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HCS2013040.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            5684..6541
                     /gene="focA"
                     /locus_tag="OQQ72_003430"
     CDS             5684..6541
                     /gene="focA"
                     /locus_tag="OQQ72_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HCS2013041.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ72_003431"
     CDS             6596..8878
                     /gene="pflB"
                     /locus_tag="OQQ72_003431"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS2013042.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ72_003432"
     CDS             9070..9810
                     /gene="pflA"
                     /locus_tag="OQQ72_003432"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HCS2013043.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
BASE COUNT         2534 a         2488 c         2354 g         2519 t
ORIGIN      
        1 atgtgccgac gttttgataa agaaatattt ggctatttat tgcccgttgt tcattcaggc
       61 tgcctggcta atccgcgcca actgctcgaa ataatccgga aatgttttgg ccgtacattt
      121 gggatcaaga atcgtcactg gtgtatctga caacgccacc agcgagaaac acatcgccat
      181 ccggtgatca ttgtatgtcg cgatctcggc aaagttcagt ttttccggtg gagtgatacg
      241 aatgtaatcg tgcccctctt ctacttccgc accgacttta cgcagttctg ttgccatcgc
      301 aaacaggcga tcggtttctt taacacgcca gttatagata ttgcgcagcg tggtggtgcc
      361 ttttgcaaat aacgccgccg tggcaatggt catcgccgca tcgggaatat ggttcatatc
      421 catatcaata gcgttcagtt caccacgcgt gcaggaaata taatcatcgc cccagcaaat
      481 ggtcgcgccc attttttcca gcacatcagc aaagcgaata tcaccctgca tactgttacg
      541 tccaataccg gtcactttta cagtgccgcc tttgattgct gctgctgcca gaaagtaaga
      601 agccgaagat gcatcgcctt cgaccaaata agtacccgga gactgataag actgtccgcc
      661 ttttacgaca aattgttgat agtgctgatt ttcaatttca acaccaaacg tcttcatcag
      721 attgagtgtg atgtcgatat aaggtttaga aaccagatcg cctttaatac gaatcaccgt
      781 atcttccggc gcaagaggcg cagtcattaa cagtgcggtg aggaattggc tggaaacgga
      841 gccatcaacg tcaacgttgc cgccagtaaa gccgccctgt aaacgcaacg gcggataatt
      901 ttcttgttcc aggtaagtga tcttcgcccc gcccaggcgc agcgcatcca ccagatgacc
      961 aatcgggcgt tctttcatac gcggctcacc ggtcagcaca atatcattgc tacccagaca
     1021 aagagctgcc gccagcggac gcattgccgt tccggcgtta ccgaggaaca actccagggc
     1081 accttctgcg tgtaatggac cgccgttacc gataatttcg caacgcgtac gatcggctga
     1141 aagcgtatag cttaccccta acgctgttaa tgcattcagc atatggcgca cgtcatcgct
     1201 atccagcaga ttggttaata ctgttttgcc gtgtgctaat gccgccagca ataaagcgcg
     1261 gttagaaacg ctcttggaac cgggcagatt aatagtgcca tcgacacgag cgatgggttg
     1321 taacgtcagg gattccatga actcaactct ctacaacaga aataaaaacc ccacaggctg
     1381 gctgtgggga ttaagcaaaa tttcggcatt aaccgtgacg gcgttcgaac tcaaccatga
     1441 agtctgtcag cgctttaacg ccttccagcg gcatggcgtt ataaatagaa gcgcgcattc
     1501 cgccgaccac acggtgacct ttcagtgcat gaaggccagc agcaaaagac tcttcaagga
     1561 acaatttgtc aagcgcactg tccgccaact ggaacggcac gttcatccgc gaacggttag
     1621 ctttcgccac gtcattgcgg tagaaatcgc tgttatcaat caccccatat agcagttctg
     1681 ctttttgctg attgatttta tccatttcag ctacaccgcc gttcgctttc agccatttaa
     1741 agaccagacc agatagatac caggcaaatg tcggcggcgt gttaaacatg gagccgttat
     1801 cgttgaagat ggaataatcc agtatcgacg gacacgcgat attcgctttg cccagcaaat
     1861 cttcacgaac gatgacgatt gtcaggccag ccgggccgat atttttctgc gcgccagcgt
     1921 aaatcacgcc ataacggctg acgtcaatcg gacgggaaag aatggttgaa gagaagtcgg
     1981 cggcgaccac cacatctttg ccgaagtctg gcgtttcgtc gatggcgata ccgtcgatgg
     2041 tttcattcgg gcagtaatgc atataagcag cattatcaga gagttgccat tcacgcattg
     2101 gcttaaccgc gcgcagacca tcaacagtca ctttggcgtc aaagacatta ggcgtgcagt
     2161 attttttcgc ttctttaatg gcacttgccg cccagtaacc ggcatcaaca taatctgcgg
     2221 tggttttatc accgagaata ttcagcggta ccgcagcaaa ctgaccgcga ccaccgccat
     2281 ggcagaataa taccttgtag ttggagggga cattaagaag atcgcgaaaa tccttctcgg
     2341 cttcctctgc aacctgaatg aactctttgc cacggtgact cacttccatc accgacgtac
     2401 caagaccgtt ccagtcgcgc agttcctgtt gagcctgttt aagcacctct gccggtagca
     2461 ttgccggacc agaactaaaa ttgaagattt gagccatttc ccctcaccac gttgcgttgc
     2521 tattaacccg cggtcaatcg attgcgacca caggtaatac attattcctg tggctatcgg
     2581 ttttatcatt cagtgacaca catcgcaatg agtaaaaccg ttgagggcaa aaatgaggct
     2641 tgcatcacac aaaagaatct ctcggattat tagcaaaaag ccgatgtttt tactgtcagg
     2701 tcacccgttt tgcccgactt gccttcgtcc attctggatt tgcacagcgc ggacataatt
     2761 gtttttcccc cgctttcata tgaatgattt cactacaacg aatacaggca tagtccgccg
     2821 actccggcac cactttgtaa cgctgcgtac aatcactggg taaaataagt aaacccggtt
     2881 tcaccttgtc atcttcaaag aaatagacac tgatttgccc gttggtttcg agaatcgcca
     2941 gacgtacctg ccccagctgc tccacgccac gcaatcgtag ctccataaag aactcaaatt
     3001 ccgtcatgtt ggagttattg agtttcgacc aggccagctc gccatcttca ataataacaa
     3061 ccggcttacc ttccagtaga tcttccagtt tttcactgtg cgccatcaac cacattacca
     3121 ggcggtataa caacgccaga gtgataaaga cgataagtac cggcaccatc ggcacatcat
     3181 cataaaacgc cacatctccc gccgctgaac ccagcgtgag aatgattaac acttcaaaca
     3241 gcgacatctg tcgcacaccg cgtcttccgg tcattttgag gaacaaaaaa accagtacaa
     3301 aggtataaag actacgtagt gcaacttcgc caaggaaatc aaaaggcact ttatcaaatg
     3361 ccatacggtg gagatcgaac gccttcattt ttatgctctt atcgtggttt attcgctaaa
     3421 agcatagtca acagttcatc ggcatggcgg cggtgatagc gcctttgaga taaaacccgt
     3481 attattgcgc gctttccgta cgactaaagt gattttcatg acgcaaacat ttatccccgg
     3541 caaagatgcc gctctggaag attccatcgc tcgcttccag caaaaacttt cagacctcgg
     3601 ctttcagatt gaagaggcct cctggctgaa tcctgtgcct aacgtctggt ctgtacatat
     3661 tcgcgacaaa gagtgcgcac tgtgttttac caacggtaaa ggcgcaacca aaaaagcggc
     3721 gctggcttct gcacttggtg aatatttcga gcgtctctca accaactact tttttgctga
     3781 tttctggctg ggcgaaacca tcgccaacgg tccgttcgtg cattatccca acgaaaaatg
     3841 gttcccactg accgaaaatg acgatgtgcc agaaggacta ctcgatgacc gtctgcgcgc
     3901 gttttatgat ccggagaatg aactgaccgg cagcatgctg attgacctac aatccggtaa
     3961 cgaagatcgt ggtatttgcg gcctgccgtt tacgcgtcag tccgacaatc agaccgttta
     4021 tattccgatg aatatcattg gtaacctgta cgtctccaac ggtatgtccg caggtaatac
     4081 ccgcaacgaa gcacgcgttc agggattgtc tgaagttttc gaacgctacg tgaaaaaccg
     4141 cattattgct gaaagcatca gcctgccaga gatcccggca gacgtgctgg cgcgttaccc
     4201 agcggtggtt gaagcgatcg aaacactgga agcagaaggt ttcccgatct tcgcatatga
     4261 tggttccctt ggcggccagt atccggtgat ttgcgtggta ctgttcaatc ctgctaacgg
     4321 tacctgcttt gcctctttcg gtgcgcatcc tgattttggc gtagcactgg aacgtaccgt
     4381 gaccgagctg ctgcaaggtc gtggcctgaa agatttggat gtgtttactc cgccaacctt
     4441 cgatgatgaa gaagtcgctg aacataccaa cctcgaaacg cactttatcg attccagcgg
     4501 tttaatctcc tgggacctgt tcaagcagga tgccgattat ccgtttgtgg actggaattt
     4561 ctccggcacc acggaagaag agtttgctac gctgatggct atcttcaaca aagaagataa
     4621 agaagtttat attgccgatt acgagcatct gggcgtttat gcttgccgta ttatcgtgcc
     4681 tggcatgtcc gatatttatc cggctgaaga tctgtggctc gcgaataaca gtatgggcag
     4741 ccatttacgt gaaacgattc tttcgctacc aggcagcgag tgggaaaaag aagattacct
     4801 gaacctcatc gagcaactgg atgaagaagg ttttgatgac tttacccgcg tgcgtgagct
     4861 gttgggtctg gcgaccgggt cggataacgg ttggtacacc ctgcgtatcg gtgaattaaa
     4921 agccatgctg gcgctggctg gtggcgatct ggaacaggct ctggtctgga ccgaatggac
     4981 gatggagttt aactcatcag tatttagtcc ggaacgcgcc aactattatc gctgcctgca
     5041 aacgttgtta ttactggcac aggaagaaga tcgccagccg ctgcaatatc tgaatgcgtt
     5101 tgttcgcatg tacggcgcag atgccgtgga agccgccagt gcggcaatga gcggcgaagc
     5161 ggcgttttac ggcctgcaac cggtagatag cgatctgcac gcgtttgctg cacatcagtc
     5221 gttgttgaag gcctacgaaa agctgcagcg cgccaaagca gcattctggg caaaataaaa
     5281 tcaaatagcc tacgcaatgt aggcttaatg attagtctga gttatattac ggggcgtttt
     5341 tttaatgccc cgctttacat atatttgcat taataaaata attgtaatta taaggttaaa
     5401 tatcggtaat ttgtatttaa taaatacgat cgatattgtt actttattcg cctaatgctc
     5461 ccttttaatt aactatttta gcggaggatg cggaaaaaat tcaactcatt tgttaatttt
     5521 taaaatttat ttttatttgg ataatcaaat atttactccg tatttgcata aaaaccatgc
     5581 gagttacgga cctataagcc aggcgagata tgatctatat caatttctca tctataatgc
     5641 tttgttagta tctcgtcgcc gacttaataa agagagagtt agtgtgaaag ctgacaaccc
     5701 ttttgatctt ttacttcctg ctgcaatggc caaagtggcc gaagaggcgg gtgtctataa
     5761 agcaacgaaa catccgctta agactttcta tctggcgatt accgccggtg ttttcatctc
     5821 aatcgcattc gtcttctata tcacagcaac cactggcaca ggcacaatgc ccttcggcat
     5881 ggcaaaactg gttggcggca tttgcttctc tctggggctg attctttgtg ttgtctgcgg
     5941 agctgatctc tttacttcca ccgtgttgat tgttgttgct aaggcgagtg ggcgcatcac
     6001 ctggggtcag ttggcgaaaa actggctaaa tgtctatttt ggcaacctgg tcggcgcact
     6061 gctgtttgta cttttaatgt ggctttccgg cgagtatatg accgcaaatg gtcaatgggg
     6121 actaaacgtc ctacaaaccg ccgaccacaa agtgcaccat acttttattg aggccgtctg
     6181 tcttggtatc ctggcaaacc tgatggtatg tctggcagta tggatgagtt attctggccg
     6241 cagcctgatg gacaaagcgt tcattatggt gctgccggtc gcgatgtttg ttgccagcgg
     6301 ttttgagcac agtatcgcaa acatgtttat gatcccgatg ggtattgtaa tccgcgactt
     6361 cgcatctccg gaattctgga ccgctgtcgg ttctgcaccg gaaaattttt ctcacctgac
     6421 cgtgatgaac ttcatcactg ataacctgat cccggttacg atcggtaata ttatcggcgg
     6481 tggtttgttg gttgggttga catactgggt catttacctg cgtgaaaacg atcaccatta
     6541 atggttgtcg aagtacgcag taaataaaaa atccacttaa gaaggtaggt gttacatgtc
     6601 cgagcttaat gaaaagttag ccacagcctg ggaaggtttt accaaaggtg actggcagaa
     6661 tgaagtaaac gtccgtgact tcattcagaa aaactacact ccgtacgagg gtgacgagtc
     6721 cttcctagct ggcgctactg aagcgaccac caccctgtgg gacaaagtaa tggaaggcgt
     6781 taaactggaa aaccgcactc acgcgccagt tgactttgac accgctgttg cttccaccat
     6841 cacctctcac gacgctggct acatcaacaa gcagcttgag aaaatcgttg gtctgcagac
     6901 tgaagctccg ctgaaacgtg ctcttatccc gttcggtggt atcaaaatga tcgaaggttc
     6961 ctgcaaagcg tacaaccgcg aactggatcc gatgatcaaa aaaatcttca ctgaataccg
     7021 taaaactcac aaccagggcg tgttcgacgt ttacactccg gacatcctgc gttgccgtaa
     7081 atctggtgtt ctgaccggtc tgccagatgc atatggccgt ggccgtatca tcggtgacta
     7141 ccgtcgcgtt gcgctgtacg gtatcgacta cctgatgaaa gacaaactgg cacagttcac
     7201 ttctctgcag gctgatctgg aaaacggcgt aaacctggaa cagactatcc gtctgcgcga
     7261 agaaatcgct gaacagcacc gcgctctggg tcagatgaaa gaaatggctg cgaaatacgg
     7321 ctacgacatc tctggtccgg ctaccaacgc tcaggaagct atccagtgga cttacttcgg
     7381 ctacctggct gctgttaagt ctcagaacgg tgctgcaatg tccttcggtc gtacctccac
     7441 cttcctggat gtgtacatcg aacgtgacct gaaagctggc aagatcaccg aacaagaagc
     7501 gcaggaaatg gttgaccacc tggtcatgaa actgcgtatg gttcgcttcc tgcgtactcc
     7561 ggaatacgat gaactgttct ctggcgaccc gatctgggca accgaatcta tcggtggtat
     7621 gggcctcgac ggtcgtaccc tggttaccaa aaacagcttc cgtttcctga acaccctgta
     7681 caccatgggt ccgtctccgg aaccgaacat gaccattctg tggtctgaaa aactgccgct
     7741 gaacttcaag aaattcgccg ctaaagtgtc catcgacacc tcttctctgc agtatgagaa
     7801 cgatgacctg atgcgtccgg acttcaacaa cgatgactat gctatcgctt gctgcgtaag
     7861 cccgatgatc gttggtaaac aaatgcagtt cttcggtgcg cgtgcaaacc tggcgaaaac
     7921 catgctgtac gcaatcaacg gcggcgttga cgaaaaactg aaaatgcagg ttggtccgaa
     7981 gtctgaaccg atcaaaggcg atctcctgaa ctacgatgaa gtgatggagc gcatggatca
     8041 cttcatggac tggctggcta aacagtacat cactgcactg aacatcatcc actacatgca
     8101 cgacaagtac agctacgaag cctctctgat ggcgctgcac gaccgtgacg ttatccgcac
     8161 catggcgtgt ggtatcgctg gtctgtccgt tgctgctgac tccctgtctg caatcaaata
     8221 tgcgaaagtt aaaccgattc gtgacgaaga cggtctggct atcgacttcg aaatcgaagg
     8281 cgaatacccg cagtttggta acaatgatcc gcgtgtagat gacctggctg ttgacctggt
     8341 agaacgtttc atgaagaaaa ttcagaaact gcacacctac cgtgacgcta tcccgactca
     8401 gtctgttctg accatcactt ctaacgttgt gtatggtaag aaaactggta acaccccaga
     8461 cggtcgtcgt gctggcgcgc cgttcggacc gggtgctaac ccgatgcacg gtcgtgacca
     8521 gaaaggtgct gtagcgtctc tgacttccgt tgctaaactg ccgtttgctt acgctaaaga
     8581 tggtatctcc tacaccttct ctatcgttcc gaacgcactg ggtaaagacg acgaagttcg
     8641 taagaccaac ctggctggtc tgatggatgg ttacttccac cacgaagcat ccatcgaagg
     8701 tggtcagcac ctgaacgtta acgtgatgaa ccgtgaaatg ctgctcgacg cgatggaaaa
     8761 cccggaaaaa tatccgcagc tgaccatccg tgtatctggc tacgcagtac gtttcaactc
     8821 gctgactaaa gaacagcagc aggacgttat tactcgtacc ttcactcaat ctatgtaatt
     8881 agatttgact gaaatcgtac agtaaaaagc gtacaataaa ggctccacga aagtggggcc
     8941 ttttttagca cgagagcctt ttttgtcagc tatctatact ttaaggtgac tgccaaaaca
     9001 gactcgacgt agccttcgag ctgcgcacca acacggcctc agatgggcca catctggaga
     9061 aacaccgcaa tgtcagttat tggtcgcatt cactcctttg aatcctgtgg aaccgtagac
     9121 ggcccgggta ttcgctttat cacctttttc cagggctgcc tgatgcgctg cctgtattgt
     9181 cataaccgcg acacctggga cacgcatggc ggtaaagaag ttaccgttga agatttgatg
     9241 aaggaagtgg tgacctatcg ccactttatg aacgcttccg gcggcggcgt taccgcatcc
     9301 ggcggtgaag caatcctgca agctgagttt gttcgtgact ggttccgcgc ctgcaaaaaa
     9361 gaaggcattc atacctgtct ggacaccaac ggttttgttc gtcgttacga tccggtgatt
     9421 gatgaactgc tggaagtaac cgacctggta atgctcgatc tcaaacagat gaacgacgag
     9481 atccaccaaa atctggttgg agtttccaac caccgcacgc tggagttcgc caaatatctg
     9541 gcgaacaaaa atgtgaaggt gtggatccgc tacgttgttg tcccaggctg gtctgacgat
     9601 gacgattcag cgcatcgcct cggtgaattt acccgtgata tgggcaacgt tgagaaaatc
     9661 gaactcctcc cctaccacga gctgggcaaa cacaaatggg tggcaatggg tgaagagtac
     9721 aaactcgacg gtgttaaacc acctaagaaa gagaccatgg aacgcgtgaa aggcattctt
     9781 gagcagtacg gtcataaggt aatgttctaa tttccccgta aagcggcaac tttattgagt
     9841 tgccgctttt ttattccgcg cttcattctg ctacagtgtt tttaacacat tttat
//
LOCUS       DAJVUY010000156         9787 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.156, whole genome shotgun sequence.
ACCESSION   DAJVUY010000156 DAJVUY010000000
VERSION     DAJVUY010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9787
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.156"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(187..528)
                     /locus_tag="OQQ72_003433"
     CDS             complement(187..528)
                     /locus_tag="OQQ72_003433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HCS2013044.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(531..4310)
                     /gene="tamB"
                     /locus_tag="OQQ72_003434"
     CDS             complement(531..4310)
                     /gene="tamB"
                     /locus_tag="OQQ72_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HCS2013045.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     PVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(4307..6040)
                     /gene="tamA"
                     /locus_tag="OQQ72_003435"
     CDS             complement(4307..6040)
                     /gene="tamA"
                     /locus_tag="OQQ72_003435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HCS2013046.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSCGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            6246..6884
                     /gene="msrA"
                     /locus_tag="OQQ72_003436"
     CDS             6246..6884
                     /gene="msrA"
                     /locus_tag="OQQ72_003436"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HCS2013047.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNEPDGME
                     IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            7207..8550
                     /locus_tag="OQQ72_003437"
     CDS             7207..8550
                     /locus_tag="OQQ72_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS2013048.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(8612..8818)
                     /locus_tag="OQQ72_003438"
     CDS             complement(8612..8818)
                     /locus_tag="OQQ72_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HCS2013049.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            9143..9697
                     /locus_tag="OQQ72_003439"
     CDS             9143..9697
                     /locus_tag="OQQ72_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HCS2013050.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
BASE COUNT         2260 a         2683 c         2408 g         2436 t
ORIGIN      
        1 actcaccgtt caaagcgtgc ccccgtttta cccctgcaca tttgtgaacg ccagcagagt
       61 tttttatgcg attgcagata tggaaagcgg ctcggagaga aaagcaaaag atggaaaagt
      121 tacaaaaaaa aatcgcgaga tacatcgcat aaaacaacgc cacccgaagg tggcgtgctt
      181 ttattattac ttatccctgt ctaaccagtc gccgctttca attagcttta atccctcgac
      241 gggtcgttga taaacgtaca tccatgcact cccgtacggc gtctgaatca actggcgcgc
      301 gtattcaccg cccctggtgc gcaaggcatc aagttcggcc agcgtggcgt tgtcaatacg
      361 ataaacttca ccgtgtaccg ttccgttccc cggaactgcg cctggatagt ggcccaggct
      421 atacaactgg tagttatcga tactgaaatc gcccagtaac tgggcattgg tcatccagtg
      481 actgttgcct tgtttgtggc gtaaactgcc gtagacaaat attcgcattg ctaaaactcg
      541 aactgataga gcaaatccag tgcctggtct acaccagaca cggcttccag atatagctta
      601 ggcatcaggc gataacgtaa cgtgagtgtt gctatagagt caaatatacc cacgccgtat
      661 ttcacttgca ggcctggcaa tacatagccg ctgaccacta cctgggagga gtcgcctact
      721 ccctgggtgt cgagcgctaa attgcttacg ccaaacgtct cgccgatttt acccacaatc
      781 tggccacttt gcgcaacccc cagaccaatc agcatcgagg tcattgccgc actgtcgctc
      841 tgatcgctct ccagcccttg tccacgtagc aaataagaca atgcagcttg ttgcgacatc
      901 gccgggtcag agaagatctc cgctttcggt tcgtccgcca gaccagtgac gcgaactccg
      961 gcgattacgt cgtcttctgt agcatccggg ttacgaatag cttcaatatt aagatacggt
     1021 tgatctggcg gaccagagaa cagtagctca cccttacgca caatcagatc ctgaccatag
     1081 gcatggaagc gcccttcagg gatgttgatc tgcccgttca ggcccagccc ttgtttgtcc
     1141 tgaacgacgt taagatcgcc cgtcagccgc gctttcaggc caaaggcgtc aatgcgcaca
     1201 ttgttgccaa cgtggacaat caggttactg ttaatcggaa tcgacgccgt tttcggctct
     1261 tccggttgca ggttatcgtt aagcatcacc acatcgctgg agacgcctac tgcgctttcc
     1321 ggcagatcgt gcaccacgat gcgcgcccac gggacatcca cgcgaccatc gagggtaaac
     1381 aggtttggtg tagcctcgaa tacaacatct ggcgatacat ccattcgtac catcggcggc
     1441 acggtgatcc gcactttact gcctttcgcc gttactcgtg cccgccagtt ttcaatttgg
     1501 ctccagtcgg catcaccgtt caggtagatt tcaccctgct gggtccgtac tgtaccggca
     1561 agcgtcgagc gcataccgtt aaagttgacc gcaagctggc tcggctgcat atcaaacggc
     1621 ataaagttgc cgtcgatatc cacacccgta acctgaagct gaccaaacaa ctgcgggctt
     1681 tgcacatcac cacccagacg caagttggca ctcaccatcc ccgctgcttt ttccccacga
     1741 gtaaagatgg ggtttatcat cgcaaggttg aagttacgga tattgacgtt gccaccaaga
     1801 ttacggcggc cttgcggatc ggtcaccagc acctgtccat caaactggcc gttattggtc
     1861 aggcggatgg tccagcccaa ttcggcacgg ttgttacgca attccgccgt cagattcagt
     1921 gtctgaaacg ccaccggcag cgccgcatcg ttgacggttt gcgttacctg cacgttacgc
     1981 cccgaaaggg tgatactgcc ctgcggcagc ccctctttcg tggtgtccca ggcaacatcc
     2041 gctttacccg tgaagatacc gctggcctga gtggtttctg gcataaacgg tttcagcatg
     2101 gcgaagtcga agcggttgag attcaccacc gcacgccctt cggcccccgc atcgatagtt
     2161 tgcggcacgc acagttccgc attcgggtta agccagcagt gtggcccgat gctgattttt
     2221 tgctccttat tgcggtaatc cagcgcaata tcgcgggtca gcgaccacgg gccgaccagc
     2281 gtctggaagc gggtattgct aagagttccc ttccagcgtt cttctttgcg atcaaaactt
     2341 cctgccagat taagctgccc ggagacaggc tcgccctgaa tccgcaactg tagctcgtgc
     2401 tgcttttcgc tgcctttggc attcagggtg acgaggttga tatttacatc cggctgcgaa
     2461 atttgctcaa cgcgtacgtc gagtttcccg gcgatctgat cggtggattt aatgtcgcct
     2521 tccacgcgaa cctgcgtcac ggaaagttcc tgccagcgca ggccgcgcgc ggtgatatct
     2581 gccagtagtt gtggcgcttc caccgtgccg cgtactttca ccagcccttt cgctgtaccg
     2641 ccaagccccg gcagcgcgtt atccagcccc ggcgcgttga tggtggcatc aagattgaga
     2701 tcttttaccc ccagctcgcc tttcacttcg gcactgtttg gccccagttc cagatgaagc
     2761 ccagggatca tccactgcat ataactgttg cctttcagcg tgccgtcaac gttcactttg
     2821 ttctgtttga cgttaccggt cagcttcagt tctggcacct ccatctgcca ggtgccgccg
     2881 tacaggctac cgcgggtttt aatcaagcca ttgagtttcg acggccactc cgggaactct
     2941 ttggcggtgt taatgccatt aagcgttagc tcaccgcgcc aactaatggc ctgctgccag
     3001 tcgagcaacg ccttgagttc agttttccct tccagcgccg cgacggtgag tttgtcgaga
     3061 ttgacctgct gttcattacc tttggcatca agggtaatgg tggctggcgg gatctcctgt
     3121 cccttcactg ccgtacgcat agagagcgtg taatcggtca ttttgccggt aagtttcagt
     3181 ttcagatcat ccgcctgata ctgcttctca ccagtgaacg gccagtaaag ctgtttgctg
     3241 ttcacttcca cgttgagcgg caatccggct tccgccagtc gcgtctgggc gcgtaaatcc
     3301 atatccaccg gaccggaaag attaacgcca atctccagct gttcgcgcag cgcgccgccc
     3361 acttttagct tcactttttc acctttcaac ggctccacgt tcagtgtgct gttgagggtg
     3421 atatccaccg gccagttgtc tgacagctgc gccgtgccgc tggcgttgac gatcccctgg
     3481 ttggaatcga tatccagggc gtccagttta gtattgccgt caatgctgct cactttcagc
     3541 agcatggtgc gcacggtgat gtccgtgtcg cccgtcacgc gtaactgctc gcctttaaac
     3601 tcttcaatgt tcaggttaag cggcaaatgc aagtcggtca tttccggcaa taccgggcga
     3661 gaaaagagat ctttcagcgt ttcgccgagc ggcttttcat ccggctgcgg attttcaatt
     3721 ttcggttcga ccacttcttc ctgcgccact tccgccactt tcggcagagc aatcagcagg
     3781 cctttcagcg acgtcggttt cagggtcagg gttttctcct gccagttcag gccggaggtg
     3841 aagtccatca ccgacaccgt ggtgtcatca atcttgatgt tgacgttgtc cagcgccacc
     3901 cgtgtcaggg tgatgggata cggcgtggag agatccagcg gaccgctatc ttcctcttct
     3961 tcaacctgtt cagaaggagg cattttttta ctgtcgatgt tgacctgaat gtctttcagc
     4021 gccaggtcat taatacaaac gctactgttc cacaggcact caagaccgac cgccagatgc
     4081 agattacccg cttttaccgc cacgcctggc tgctcataac gaacgtcaga caaggtgaga
     4141 tcgcgccagc cgccggtgac cttgccaata tccagtcctg gcacccagcg atccgccgct
     4201 ttaaatacaa gatgcaggcc gctggtggtg cccaccagaa acgccaccga tcccagcaac
     4261 agtaagataa cgataaccac gccgaggctg atttttttcc ataaactcat aattctggcc
     4321 ccagaccgat gtaaaactgt aacccgtgtt cgtctttatc cgcgaccggt acggcaaaat
     4381 cgagtttgat tggcccgacc ggcgattccc agcgcacgcc gaccccggta ccggttttaa
     4441 agtcgctgcg gcgaatatcg cttaccgctt cgccactatc gacaaacacc gcgccccacc
     4501 attttccggt cacgttgtac tggtattcca gcgatccggt tatcaacttc gaggcccctt
     4561 tcaggtcacc gttggcgtat ttcggggcga tagatttgta tttgtagccg cgaatactgc
     4621 gatcgccccc ggcgaaaaaa cgcagatccg gcggtacttt gtcgaaatca ccggtttcaa
     4681 tccagcccag cgtgccgcgt gtaacgaaac gatggcgatc gtacagtgtg cggatccaga
     4741 cgttctgcgc ctggaaaacg gagaaatcga catctgagcc ccaggccgtg ttggagtagt
     4801 cgatagagta gcgttgcgag tcgccccagg ttggcatcag gccaccacaa gaacgcgtgc
     4861 ggctaatcat caccccagga taaaacagca tcgtggtgtt ggtaatttca ccctgagtaa
     4921 agtggtcgag actccagcgc aggttaatgg cacgctgcca accgctggag agatcccagt
     4981 agcgagaagc caccagcgta gtggagtcag attcggtatc gttcaggtca gtgcgcttaa
     5041 aaccgccctg caccaaataa tattgttcca gtggattctt cagcagcggc attttatagc
     5101 tgaagtcgag ggtctgttcc ggcgcggaaa tactggtact ggtggtcaaa ctgtgaccgt
     5161 atgagttcat ccacggcttt ttccacgtcg ctttcacgcg cggtcccacg tccgtagagt
     5221 aaccgacccc ggtttcgatg gtgttttctg ttcgcggcga aaccacgccc gtcaatggta
     5281 atactttcgt ttcgcgcgct ttatcaaatt gtggagccac caccaccgag ttaaaccagc
     5341 cggtagcaga aagtcggcgg ttcagttccg ccagatcttt cgattcatac tcatcgccct
     5401 ctttaaacgg caccagattt tgcaggtatt catcgcggat ttgtgatcct tcaaaggtca
     5461 catgcccaaa gcggtaacgt tcgccactgt tataatcaat atcccagaag gctttatgca
     5521 ggccgagcgc aatgcccagc tgcgctttgg taaattcgct atcgaaataa cctttacgca
     5581 acgcaatact ggttaaggac tttttgaaat tttcataatc gccctggttc agtaccgtac
     5641 caatagccgg gcgagtatcg agcaatttca aatagtcttt atcggtccgc gcgccgccgc
     5701 gcaataccac atcggtgccg ccaattaaca ccggcacacc tggcgtgact ttggcgatca
     5761 atacctgccg ccctttcttt ggcggtggac ggagatcaaa ttcaatggtc ggctggtaat
     5821 aacccagcgc tttcagacct tcacggatgg catcatcgac gcgtgcgcga aagcggcggt
     5881 ctggcgtcac ttcatcactt tcaatcgtag aaagctgcgc acgaacgttc ttttccagct
     5941 gtcccgataa cccctcgacc tgtagacgga cgttcgcggc gacggcagat ccgcttaagc
     6001 agagtaagct tacacagcat aactgtcgga tatagcgcac attttctcct gaatatcctt
     6061 ttttcctgcc cctggaacgc cgttaaacgg cttaacaaaa atccagtaat atggattaaa
     6121 aagcagacta aaccccaaat atttcttatg ttttacttta gacctattca cggtggttat
     6181 tgtgtgcaaa tacgcctctt gttacaacct taaccccaat gaccgatttt cgggagagcg
     6241 acaccatgag tttatttgat aaaaagcatc tggtttcccc cgccgatgcc ctgcctggac
     6301 gtaacacccc gatgcccgta gccacgctgc atgcggtcaa cggtcactca atgaccaatg
     6361 aacctgacgg aatggagatt gccatttttg cgatgggttg tttctggggt gtggagcgtc
     6421 tgttctggca gttacccggc gtttacagca ccgccgcagg ctataccggc ggctatacgc
     6481 caaatccgac ttatcgggaa gtgtgctccg gtgatacggg tcatgccgaa gcggtacgca
     6541 ttgtttacga tccttccgtc atcagctatg agcagttgct acaggtattt tgggagaatc
     6601 acgatcccgc ccagggaatg cgtcagggca atgaccacgg cacgcagtat cgttcagcga
     6661 tttatccgct gaccccagaa caggatgccg cagctcgcgc cagtctggaa cgttttcagg
     6721 cggcgatgct tgccgccgat gacgatcgtc acatcaccac ggaaatcgct aacgccacac
     6781 cgttttatta tgccgaagat gaccaccagc aatatctgca taaaaaccca tatggttact
     6841 gtggaattgg cggaattggc gtctgtctgc cgccggaagc atagcgttac gggtacaaat
     6901 gtagtttgtt gataaagtgc tctttgtcta tgcctgatgc ggcttaaacg acttaccagg
     6961 cctacaaaat cgtccaaatt caatatattg caaggactgc gtaggcctga tcggcatagc
     7021 gcatcaggca gtattgcatt tatcagcagt ctgaatttta accctctggc gactttacag
     7081 taccttacgc tatactagcc actgaaaatt ccggttcact ttcttcgaat cggctttcaa
     7141 tgtgtatttc acacaaatta atcaactttc ccttccgagg atctggcctg aaaggtcgga
     7201 taagatatgt taaacagtat tttagtcata ctctgcttga tcgctgtaag tgcgttcttc
     7261 tcgatgtccg agatctcgct tgccgcctca cgcaaaatca aacttaaact gctggctgat
     7321 gaaggcaata taaatgccca acgcgttctg aatatgcagg aaaatcccgg catgttcttt
     7381 accgtggtcc aaatcggtct gaacgcagtg gcgattctcg gcggtatcgt cggtgatgcg
     7441 gcattttctc cagcttttca cagcctgttc tcccgctata tgtcggcaga gctctctgag
     7501 caactgagct ttattctctc tttctcgtta gtgactggca tgtttatcct gtttgcggat
     7561 ttaaccccga aacgcatcgg tatgattgcg ccagaagcgg tggctttgcg tatcatcaac
     7621 ccgatgcgct tctgcctgta cgtttgcacc ccgctggtgt ggttcttcaa cggcctggcg
     7681 aacatgatct tccgtatttt caaactgcca atggtacgta aagatgacat cacttctgat
     7741 gacatctacg cggtagtgga agccggtgcg ctggcgggcg tgttacgtaa acaggaacac
     7801 gagctgattg aaaacgtctt tgagctggaa tcccgtaccg ttccgtcttc aatgacaccg
     7861 cgtgaaaacg tgatttggtt tgatctccac gaagatgagc aaagcctgaa gaataaggtg
     7921 gcggaacatc cgcactctaa gttcctcgtc tgtaatgaag atattgacca catcatcggt
     7981 tatgtcgatt ctaaagacct gctgaaccgc gtgctggcta accaaagcct ggcactgaac
     8041 agcggcgtac aaattcgcaa cacgctgatt gtgccggata cgttaaccct ttcagaggcg
     8101 ttggaaagtt ttaaaaccgc aggtgaagac ttcgcggtga tcatgaacga gtacgcgctg
     8161 gtggtgggga tcatcaccct caacgacgtg atgaccacgc tgatgggcga tctggtcggt
     8221 caggggctgg aagagcagat tgtcgcccgt gatgagaact catggctgat tgacggcggc
     8281 accccaattg acgacgtcat gcgcgtgctg gatattgacg agttcccgca gtcgggcaac
     8341 tacgaaacca tcggcggctt tatgatgttt atgctgcgta agatcccgaa acgcaccgat
     8401 tcggtgaaat tcgccggcta caaatttgaa gtggtggata tcgataacta ccgcatcgac
     8461 cagctgctgg tgacccggat cgacagcaag gccaccgccc tttcgccaaa actgcctgac
     8521 gctaaagata aagaagaaag cgtcgcgtaa cccccagaaa catcaacggc tcctgaatca
     8581 ggagccgtct tattactgca tagcactttg gttaagccat ctctgtttgc agacgcataa
     8641 cctgacggtt aacttcggac atcactgaca aatgcagctt atccttcact tttgggataa
     8701 gaatcttacc cttatcaaat tcaaaagcgc caacgtcctt gatgtataac cgtccacgga
     8761 acaggatctt tacgtacttc gccacctgaa gtgggttgta ccgttggaaa attttcattg
     8821 ttatctcctg ctgagtatta cgcctgtgcg gtgccacaat cggcccaact attatgagac
     8881 gcaaatttta atgcttagtg actatagact atccgggcaa tgtttccacc gcgtataact
     8941 ttttttacct aaaggttaca attattcaga attatctttt taccgaagcg cggtcttcag
     9001 tataagcatt catttttcat atgatttgtg cgcttgaccg caaactggca tcacacttgc
     9061 gggaaattcg ataaatagca catatgatta aaactcagat ccaagtggtc ggatcacctg
     9121 catatcataa gaaggaaaca ccatgaccct acgcaagatt ctggcactca cctgcctgct
     9181 gttgccgatg atggcttccg cacatcagtt cgaaaccggt cagcgagtgc cgccgattgg
     9241 cattaccgat cggggcgagt tggtgcttga taaagatcag tttagctaca aaacctggaa
     9301 cagcgcgcag ttagtgggaa aagtgcgagt actgcaacat attgctggtc gcacctctgc
     9361 aaaagagaaa aacgcgacgc tgattgaagc gattaaatca gcaaagttac cgcacgatcg
     9421 ttaccagacc accaccattg ttaacaccga cgacgcaatt ccgggttccg gcatgtttgt
     9481 gcgcagcagt ctggagagta ataaaaagct ttatccctgg tcgcagttta ttgtcgatag
     9541 caatggcgtc gcgcgcggtg cctggcagct ggatgaagaa agttccgctg tagtggtgct
     9601 ggataaggat ggtcgcgtgc aatgggccaa agacggggcg ctcacacagg aagaggtgca
     9661 gcaagtgatg gacctgctgc aaaagttgct caaataatgg caataacata aattctgcaa
     9721 aaataatttt cccctatcgt tatctatggg ataggggaat taggtctctg agctcttaca
     9781 ccgaact
//
LOCUS       DAJVUY010000157         9755 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.157, whole genome shotgun sequence.
ACCESSION   DAJVUY010000157 DAJVUY010000000
VERSION     DAJVUY010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.157"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1005
                     /locus_tag="OQQ72_003440"
     CDS             <1..1005
                     /locus_tag="OQQ72_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312656.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HCS2013051.1"
                     /translation="PKSEKYVFIHGPENPDETWYYDFHHRRGVIAEGGKVSNLDAMDI
                     TAPYTPGALRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQ
                     KQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEEGWVGNHALAFIGDTLSPKGEKV
                     PELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPR
                     HWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPRQLTHNKTDIQSAFNWHPSGEWL
                     GFVLDNRIACAHAQSGEVEYLTESHANPPSADAVVFSPDGQWLAWMEGGQLWITETDR
                     "
     gene            complement(1007..1339)
                     /locus_tag="OQQ72_003441"
     CDS             complement(1007..1339)
                     /locus_tag="OQQ72_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS2013052.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSHVEKSEANAQATNAVI
                     PPARMPDN"
     misc_feature    1579..1651
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01832"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ROSE (Repression Of Heat Shock gene Expression)
                     occurs in the 5'-region of heat shock genes and acts as an
                     RNA thermometer to modulate expression; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF01832"
     gene            1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ72_003442"
     CDS             1645..2058
                     /gene="ibpA"
                     /locus_tag="OQQ72_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HCS2013053.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     gene            2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ72_003443"
     CDS             2170..2598
                     /gene="ibpB"
                     /locus_tag="OQQ72_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HCS2013054.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            2794..4455
                     /locus_tag="OQQ72_003444"
     CDS             2794..4455
                     /locus_tag="OQQ72_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HCS2013055.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAPALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(4452..5168)
                     /locus_tag="OQQ72_003445"
     CDS             complement(4452..5168)
                     /locus_tag="OQQ72_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS2013056.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            5463..7079
                     /locus_tag="OQQ72_003446"
     CDS             5463..7079
                     /locus_tag="OQQ72_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS2013057.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMIWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGGWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            7079..8402
                     /locus_tag="OQQ72_003447"
                     /pseudo
     CDS             7079..8402
                     /locus_tag="OQQ72_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312649.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
     gene            complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="OQQ72_003448"
                     /pseudo
     CDS             complement(8533..8964)
                     /gene="tnpA"
                     /locus_tag="OQQ72_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            8972..9755
                     /locus_tag="OQQ72_003449"
                     /pseudo
     CDS             8972..9755
                     /locus_tag="OQQ72_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2307 a         2436 c         2558 g         2454 t
ORIGIN      
        1 ccgaagtcag agaaatatgt tttcatccat ggcccggaaa atcctgatga aacatggtat
       61 tacgatttcc atcatcgacg cggagtcatt gctgaaggcg gcaaggtgag caatctcgat
      121 gcaatggata ttaccgcgcc gtatacgcca ggagcgctgc gcggcggcag ccatgtgcat
      181 gtctttagcc cgaacggtga aagggtgagc tttacctata acgaccatgt aatgcatgaa
      241 ctcgatccgg cgctggattt gcgaaacgtc ggtgttgctg cgccgtttgg cccggtcaac
      301 gtacaaaagc agcatccgcg tgaatacagc ggtagccact ggtgcgtgct ggtgagtaaa
      361 accacgccca cgccgcagcc tggcagcgat gaaatcaatc gtgcttatga agaaggatgg
      421 gtaggaaatc acgcgctggc gtttattggc gacacacttt cgccaaaggg cgagaaagtg
      481 ccggagctgt ttatcgttga gttaccgcaa gatgaagctg gctggaaagc ggcaggtgat
      541 gcgccgttaa gtggaacgga aaccaccctg cccgcgccac cgcgcggcgt cgtgcagcga
      601 cgtttaacct ttacccacca tcgggcttat ccggggttag tcaacgtccc gcgccactgg
      661 gtgcgctgta atccgcaggg tacgcaaatc gcgtttttaa tgcgtgatga taacggcatt
      721 gtgcaactgt ggcttatctc gccacagggc ggcgagccgc gccagttaac ccataacaaa
      781 acggatattc agtctgcatt taactggcat ccgtcaggag aatggttggg ctttgtgctg
      841 gataatcgaa ttgcttgtgc ccatgcgcaa agtggcgagg ttgagtattt aaccgaaagc
      901 cacgccaatc caccttctgc ggacgccgtg gtcttctcgc cggatggtca atggctggcg
      961 tggatggaag gcggccagct gtggatcacc gaaactgatc gctaaatcag ttatcaggca
     1021 ttctggccgg tggaataacc gcattggtgg cttgcgcgtt ggcttcgctt ttttcaacgt
     1081 gtgagcgcac cgagctgtct ttgcggaaca catcccacgg cagtaaaagc gtgtccatca
     1141 cagcggtaaa cggcatatcg agaatcgcca gcgacttagt gccccagttg gtttcatcgt
     1201 cgccaatcat ggttgcgctg gcgcgggtgc cgggatacgt tccttctttc cctccggtat
     1261 gggacatcac gctggagcat cctccgagta atgtcattcc gctgcatatc atgaacgcta
     1321 acaacacatt tcttatcata ataaattcat ctgttgatcg tgggtgttgg cctgatgagt
     1381 tatagcgatc ccttgctgaa aataacatca tcattacgtc gcactgtggc ggctatcgca
     1441 ctttaacgtt tcgtgctgcc ccctcagtct atgcaataga ccataaactg caaaaaaaag
     1501 tccgctgata aggcttgaaa agttcatttc cagacccatt tttacatcgt agccgatgag
     1561 gacgcgcctg atgggtgttc tggctacctg acctgtccat tgtggaaggt attacattct
     1621 cgctgatttc aggagctatt gattatgcgt aactttgatt tatccccgct ttaccgttct
     1681 gctattggat ttgaccgttt gtttaaccac ttagaaaaca accagagcca gagtaatggc
     1741 ggctaccctc cgtataacgt tgaactggta gacgaaaacc attaccgcat tgctatcgct
     1801 gtggctggtt ttgctgagag cgaactggaa attaccgccc aggataatct gctggtggtg
     1861 aaaggtgctc acgccgacga acaaaaagag cgcacctatc tgtaccaggg catcgctgaa
     1921 cgcaactttg aacgcaaatt ccagttagct gagaacattc atgttcgtgg ggctaacctg
     1981 gtaaatggtt tgctgtatat cgatctcgaa cgcgtgattc cggaagcgaa aaaaccgcgc
     2041 cgtatcgaaa tcaactaatt ccctaaggcc gcctgacgcg gcctgacatc tccatgctcg
     2101 ccgtcaggga gcatatgcga atcttcggat ttgcaggtac ttactcgctt cttagaagga
     2161 gaaatgacta tgcgtaactt cgatttatcc ccactgatgc gtcaatggat cggttttgac
     2221 aaactggcca acgcactgca aaacgccggt gaaagccaga gcttcccgcc gtacaacatt
     2281 gagaaaagcg acgataacca ctaccgcatt acccttgcgc tggcaggttt ccgtcaggaa
     2341 gatttagaga ttcaactgga aggtacgcgc ctgagcgtaa aaggcacgcc ggagcagcca
     2401 aaagaagaga aaaaatggct gcatcaaggg cttatgaatc agccatttag cctgagcttt
     2461 acgctggctg aaaatatgga agtctctggc gcaaccttcg taaacggttt actgcatatt
     2521 gatttaattc gtaatgagcc tgaacccatc gcagcgcagc gtatcgctat cagcgaacgt
     2581 cccgcgttaa atagctaact agctattctc tttgccccgc cattctggtg gggctttttt
     2641 tgtctttctt cttcaacaat gcgttaaatt tcgactgttt aagatatttc ggcacgttct
     2701 ttcccgtgat aatgtgcgct ataaggcaaa tctgcttcac cgattcagcc ataatccgta
     2761 gcaattaaaa tgttatctca agagaaatgg acgatgagtg atatagcatt aacggtcagt
     2821 attctggctt tggtggcagt cgtcggtttg tttatcggca acgtcaaatt tcgcggcata
     2881 ggattaggta ttggcggcgt gctgtttggt gggatcatcg tcggccattt tgtttctcag
     2941 gcggggatga cattaagtag cgatatgctg catgttattc aggaatttgg cctgatcctg
     3001 ttcgtttata ccatcgggat tcaagtaggg ccgggcttct ttgcctcatt gcgcgtctcc
     3061 ggattacgcc tcaacctgtt tgctgttctg atcgtcatca tcggtggtct ggttaccgcc
     3121 atcctgcata aactgtttga tattccactg ccggtagtgc tggggatttt ctccggtgcg
     3181 gttaccaata cgccagcgct gggggcaggg cagcagatct tgcgcgacct gggtacacca
     3241 atggaaatgg tcgatcagat ggggatgagt tacgcgatgg cgtatccatt cggcatttgc
     3301 gggattttgt tcaccatgtg gatgttgcgg gttattttcc gcgtcaatgt cgagacagaa
     3361 gctcagcagc acgagtcttc acgcaccaat ggcggcgcgc tgatcaagac tatcaatatt
     3421 cgcgttgaga accctaacct gcatgattta gctattaaag atgtaccgat tctcaacggc
     3481 gacaaaatta tctgctcgcg tctgaaacgc gaagaaaccc taaaagttcc ttcgccagat
     3541 accattatcc aactgggcga tttgctgcat ctggtggggc agccagcgga tttacataat
     3601 gcgcaactgg tgattggtca ggaggtcgat acttcgctgt ccacgaaagg cactgatttg
     3661 cgcgtcgagc gtgtggtggt caccaatgaa aacgtgctcg gaaaacgtat tcgcgacctg
     3721 cactttaaag aacgctatga cgttgttatc tcgcgcctga accgtgccgg ggtcgaactg
     3781 gtcgccagtg gcgatatcag cctgcagttc ggcgatatcc tcaatctggt ggggcgtccg
     3841 tccgcaattg atgccgttgc caatgtgctg gggaatgcgc agcaaaaact gcaacaggtt
     3901 cagatgctgc cagtgtttat tggcatcggg cttggcgtat tgttaggttc tattcccgtc
     3961 tttgtgcctg ggttcccggc cgcgttgaaa ctggggctgg cgggcggtcc gctgattatg
     4021 gcgttgatcc tcgggcgtat cggcagtatc ggcaagctgt actggtttat gccgccaagt
     4081 gccaacctcg cgctgcggga gctggggatc gtgctgttcc tctcggtcgt tggtctgaaa
     4141 tctggtgggg attttgtgaa taccctggtc aatggcgaag ggctaagctg gattggttat
     4201 ggtgccctga tcaccgccgt tccgctgatt actgttggca ttctggcgcg gatgttagcc
     4261 aaaatgaatt acctgaccat gtgcgggatg ctggcaggtt ccatgaccga tcctccggcg
     4321 ctggcgtttg ctaataatct tcatccaacc agtggtgcgc cggcgctctc ttacgccact
     4381 gtctatccgt tagtgatgtt tctgcgaatt atcacccccc aattactggc ggtgctcttc
     4441 tggagtatcg gttaactctt ttccgggtgg agtcgccgta aatggtactc cacctggtat
     4501 tcgctggcat ttctgaacat cactgaataa ttcaaaaact ccccgctctc gctatatgac
     4561 aacgaggtga tccgcagcag tggcgtgtgt tccgctacct tcatttgccg cgccagcagt
     4621 ctatcggcga gcaccggcgt caggctttca taattaccgc caatcaaaat cccacactct
     4681 tgttcaatat attcaaactt cgacccttcc agatgttgca gcgaaagatt acggaacagt
     4741 ttaaccggca tatagctgtc ttccagcatc agcggtttcc cttccacaaa acgaacgcga
     4801 cgggagaagt agatctgctc gttgatttga atccgtaact ggctggcaat ggccggaggc
     4861 gcaggcatga tttcaaaaat cagcacctgg ctggtgaccg tttttccctg ccgttttaac
     4921 acctccacca gtccggtcag gctggcggtt tgatgcagca catctttgcg caccaggtaa
     4981 gtgccgctgc cgtggcggcg gaccaccagc ccccacgcta ccagcaggtc aatcgcttta
     5041 cggatggtca tccgggatac tgcaaattct tccgccaact ttttttcacc gggaagaagg
     5101 ctgtttagcg tgaaatccgc ggaattaagt cgaattctta accgctccgc aatgcttttg
     5161 tagatcatct ctagatctct tttttgcctg caagcccggg taatgcgccc acaagttctg
     5221 cttaatcgat tgaaaaaaca tcttttttta aagatgtgtt cgatgctgtg taccagtgct
     5281 cacagatgtc tactttttcg cgaaaacgta gatctctacc gcccaacgaa aagcatgaaa
     5341 gcgatcacga atcccattgg gtcgtcatgt tctgccgatc gcatcttcct atcctcgctc
     5401 caggcctgcc gcataaccaa tcaggcttcc tacttacaga attgagaaaa gaggatgtgg
     5461 aaatgctcag tcaaattcaa cgctttggcg gcgcgatgtt cacgccagtg ctgctgtttc
     5521 ccttcgccgg gattgtggtg ggtcttgcca tcttgctgca aaacccgatg tttgtcgggg
     5581 aatcactgac cgatccgaac agtttattcg cgcaaatcgt acacattatt gaagagggcg
     5641 gttggacggt attccgtaat atgccgctga tttttgctgt cggtttaccc attggccttg
     5701 ctaagcaagc gcaggggcgt gcttgtctgg cggtgatggt gagtttcctg acctggaact
     5761 atttcatcaa cgcgatggga atgatctggg gaagctactt cggcgtcgat ttcactcagg
     5821 acgcggtggc aggtagcggt ctgacaatga tggccgggat taaaaccctc gataccagca
     5881 ttatcggcgc aattatcatt tccggcattg tgacggcgct gcataaccgt ctgttcgata
     5941 aaaaactgcc ggtttttctc ggcattttcc aggggacgtc ttatgtggtg attatcgcct
     6001 tcctggtgat gatcccctgt gcctggctga cgttgctcgg ttggccaaaa gtacaaatgg
     6061 ggattgaatc tctgcaagcg ttcctgcgtt cggcgggtgc gcttgggggg tgggtttaca
     6121 ccttcctcga acgtattctg atcccaaccg gtttacacca cttcatctac ggacagttta
     6181 tctttggtcc ggcagctgtt gaaggcggca ttcagatgta ctgggcgcag catctgcaag
     6241 agttcagtct gagcgccgag ccgctgaaat cgttgttccc ggaaggcggt tttgccctgc
     6301 acggtaactc aaaaatcttt ggtgccgtgg gcatttcttt agcgatgtac ttcactgccg
     6361 caccggaaaa tcgggtaaaa gtggcgggct tgctgattcc cgcaacctta accgccatgc
     6421 tggtgggaat taccgaaccg ctggaattta ccttcctgtt catttcaccg ttgctgtttg
     6481 cggtacacgc cgtgctggcg gcctcaatgt cgaccgtgat gtatctcttt ggtgtggtgg
     6541 gcaacatggg cggaggtctg attgaccagg ttttaccgca aaactggatc ccgatgttca
     6601 gcaaccacgc ggatatgatg ctgacccaaa tcgccattgg gttgtgcttt accctgctgt
     6661 acttcgtggt tttccgcaca ctgattctgc aattcaacat gtgcacgccg ggacgtgaag
     6721 atgcggaagt gaaactctac tcaaaagccg aatacaaagc ctcgcgaggc caaaccaccg
     6781 ctgcagagcc aaaaaaagag ctggatcagg ctgccggtat cctgcaagcc ctgggcgggg
     6841 tcggcaatat ctccagcatt aacaattgcg cgacgcgttt acgtattgca ctgcatgaca
     6901 tgtcacaaac gctggatgac gaagtcttta aaaagctggg agcgcacggc gtcttccgta
     6961 gtggcgatgc cattcaggtg atcattggtc tgcatgtatc ccagctgcgt gaacagctcg
     7021 atagcttaat taattctcat caatcagcag aaaatgttgc cattacggag gcagtataat
     7081 gaccaaattc tcagtggttg tcgcaggcgg tggaagcacc tttacgccag gcatcgtgtt
     7141 gatgctcctg gcgaatcagg accgtttccc gcttcgtgca ctgaaatttt atgataacga
     7201 tggtgcgcgg caggaagtga ttgccgaagc ctgtaaagtc atccttaaag agaaagcgcc
     7261 ggacattgcg tttagttaca ccaccgatcc tgaagtggca ttcagcgacg ttgattttgt
     7321 catggcgcac atccgcgtcg gcaaataccc gatgcgcgaa ctggatgaaa aaatcccgct
     7381 gcgccacggc gttgttggtc aggaaacttg cggacccggc ggaatagcgt acggcatgcg
     7441 ttccattggc ggcgtcctgg aactggtgga ttatatggaa aaatattcac caaatgcctg
     7501 gatgctcaac tactccaacc cggcagcaat tgtcgcagaa gccacgcgtc gtctgcgccc
     7561 gaatgcgaaa atcctcaaca tctgtgacat gccaatcggt attgaaagcc ggatggcgca
     7621 aattgttggg ctgcaagatc gcaaacagat gcgcgtgcgc tactacggcc tgaaccactt
     7681 tggctggtgg acatcaattg aagatttgca gggcaacgac ctgatgcccc agctgcggca
     7741 atatgtctct aagcacggtt atgttccacc gcagcaagat acacatactg aagcgagctg
     7801 gaacgacacc tatgcaaaag cgcgggatgt ccaggcactg gacccggata cattgccgaa
     7861 cacctatctg aaatattatc tcttcccgga ttatgttgtt cagcattcca accctgaaca
     7921 tacccgcgcg aatgaggtga atggaacatc gcgagaaaca ggttttcgat gcttgccgcg
     7981 ccattacagc ggcaggaaat tcagcggcgg ccaagctgga gattgacgaa catgcgtcat
     8041 acatcgtcga tctggcggcg gcaattgcct tcaacactca ggagcggatg ttgctgattg
     8101 tgcctaacaa cggggcaatc cataactttg atgatgaagc gatggtcgag atcccgtgtc
     8161 tggtcgggca caacggacca gaaccactgg tggtcggcga tatcccgcag tttcagaaag
     8221 ggttaatgag tcagcaagtg gcggtggaaa aactggtcgt ggacgcctgg gaacagcgtt
     8281 catatcagca cctgtggcag gcgattacgt tatcgaaaac ggtaccgagc gcctcggtcg
     8341 ccaaagctat tctggatgag ttgctggagg ccaacaaagc gtactggcca gagttacgtt
     8401 aattgtgtgg actggcatcc gttgggtgct ggtccgtatt ctttagcacg gctgacggcg
     8461 cataaccaaa tttatccggt gcgccgtaaa accccgtcct tcagggcggg gatataaggc
     8521 gcggttttcc acctaaccag gtgtttgctg ttgttcaatg tattggcgga tgacggatat
     8581 tggcgcacct ccgcagctat tggcaaaata gccaggactc cacaaaacgc ctttgtagta
     8641 atacctgact gcaatatctg gtcgatctcg tcgcagtaac ctacccgata cgcctttgag
     8701 gctgtttacc agactggata tcgccagttt gggaggatag ttaattaaca aatggacgtg
     8761 atctggttcg ccatccattt aaaccagttc agcttcaaaa tcagcacata catttgaaaa
     8821 gtaagtgcgt agtttttctg tcgcgtcata gtcaaaaatc tgacgtcggt atttggtgac
     8881 aaagaccagg tgaacatgca tcaggaaaac acaatgcctt ccacgccgga tatcggtttc
     8941 ttttttcaca gaccaaagta tcatttggcc tgtgaaacga ctacaagcat ttaaattcca
     9001 gttaagaccc ggtggtcaac aggagcgtga aatgaggcgc ttcgcaggcg catgtcgttt
     9061 cgttttcaat cgtgctctgg cacgtcagaa tgagaatcat gaggccggta ataaatacat
     9121 cccttacggg aaaatggctt cctggctggt tgagtggaaa aatgccactg aaacgcaatg
     9181 gcttaaagat gccccgtcac agccattgca acagtcactg aaagaccttg agcgggctta
     9241 caaaaacttc ttccagaatc gggctgcttt tccccgattc aaaaagcggg gacagaatga
     9301 tgtattccgc tacccgcagg gcgttaagct cgatcaggaa aacagccgta tttttctgcc
     9361 gaaactgggc tggatgcgct accggaacag ccgttaggtc acgggtgttg tgaaaaatgt
     9421 cactgtcagc cagtcctgcg gtaagtggta catcagtatt cagacagaaa gtgaagtatc
     9481 aactccggtt cacccttcag catcaatggt cgggctggat gctggcgtgg ctaaactcgc
     9541 cacgctgtca gatggcacag tctttgagcc tgtaaacagt tttcagaaaa accagaagaa
     9601 gctggcgaga cttcagcgac agttaagccg caaggtcaaa ttcagcaaca actggcagaa
     9661 gcagaaacgc aaaatacagc gactgcattc ctgtatcgca aatatccgca gggactacct
     9721 tcacaaagtc acaacgaccg tcagcaaaaa ccacg
//
LOCUS       DAJVUY010000158         9737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.158, whole genome shotgun sequence.
ACCESSION   DAJVUY010000158 DAJVUY010000000
VERSION     DAJVUY010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.158"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..467
                     /locus_tag="OQQ72_003450"
     CDS             <1..467
                     /locus_tag="OQQ72_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001589353.1"
                     /note="type IV secretion system coupling protein; similar
                     to F plasmid TraD; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HCS2013058.1"
                     /translation="ERPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDV
                     PEVVSGEDVTQAEQPQQPVSPVINDKKSDSGVNVPAGGIEQELKMKPEEEMEQQLPPG
                     ISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVNINVHRERGEDVEPGDDF"
     gene            complement(476..874)
                     /gene="vapC"
                     /locus_tag="OQQ72_003451"
     CDS             complement(476..874)
                     /gene="vapC"
                     /locus_tag="OQQ72_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HCS2013059.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(874..1101)
                     /gene="vapB"
                     /locus_tag="OQQ72_003452"
     CDS             complement(874..1101)
                     /gene="vapB"
                     /locus_tag="OQQ72_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HCS2013060.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            1183..6460
                     /gene="traI"
                     /locus_tag="OQQ72_003453"
                     /pseudo
     CDS             1183..6460
                     /gene="traI"
                     /locus_tag="OQQ72_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_490592.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
     gene            6480..7226
                     /gene="traX"
                     /locus_tag="OQQ72_003454"
     CDS             6480..7226
                     /gene="traX"
                     /locus_tag="OQQ72_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus acetylase TraX"
                     /protein_id="HCS2013061.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            7281..7841
                     /locus_tag="OQQ72_003455"
     CDS             7281..7841
                     /locus_tag="OQQ72_003455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HCS2013062.1"
                     /translation="MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            7972..8184
                     /locus_tag="OQQ72_003456"
     CDS             7972..8184
                     /locus_tag="OQQ72_003456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HCS2013063.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            8428..8889
                     /locus_tag="OQQ72_003457"
     CDS             8428..8889
                     /locus_tag="OQQ72_003457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HCS2013064.1"
                     /translation="MRKYIPLVLFIFSWPVLSADIHGRVVRVLDGDTIEVMDSLKAVR
                     IRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRILGQVYAPDGMNIN
                     QFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPPWIWRHRK"
     gene            8935..9144
                     /gene="hha"
                     /locus_tag="OQQ72_003458"
     CDS             8935..9144
                     /gene="hha"
                     /locus_tag="OQQ72_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS2013065.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNSERESFNSAA
                     DHRLAELIIGKLYDRIPKEIWKYVR"
     gene            9183..>9737
                     /locus_tag="OQQ72_003459"
     CDS             9183..>9737
                     /locus_tag="OQQ72_003459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HCS2013066.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQTTLLTEREVSFMKGLFRIVDMTRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTT"
BASE COUNT         2303 a         2393 c         3057 g         1984 t
ORIGIN      
        1 aggaacgacc gaaggtcgct ccggagttta ttccgcgtga catcaacccg gaaatggaga
       61 accgtctgag tgccgtactt gccgcaaggg aagcagaagg tcgtcagatg gccagcctct
      121 tcgaaccgga tgtcccggag gttgtttccg gagaagacgt gactcaggct gaacagccgc
      181 aacagccggt gtctcctgtc atcaacgata agaagtcaga ttcaggtgtg aatgttccgg
      241 caggggggat cgagcaggag ctgaaaatga aaccggaaga agagatggaa cagcaactgc
      301 cacccgggat cagtgaatcc ggtgaagtgg tggatatggc cgcttatgag gcatggcagc
      361 aggaaaatca tccggacacc tggcagcaga tgcagcgtcg tgaagaggtg aacatcaatg
      421 tgcaccggga acgcggggag gatgttgagc cgggagatga tttctgatga acaggtcagc
      481 tccagtcttc agttctcagg ccgcccacac gttcaaattc ccgggtgtta ttagtcacaa
      541 taatcagccc ccgactgcgg gcatgacctg cgatcatttg atcaaatggc ccgacagggc
      601 gtccctgacg ggcaagttct gctcttatct ggccggtgtg tgtggctgca gcagcgtcgt
      661 aatccagaac atcaatgcgg gaaacaaatc cctcgatcac agcgagatta cgttcaggca
      721 tctggctttt ttctgcacca tatatcagct ccatcagggt gaccgaactg atacacattc
      781 tcccctggtt caggttaaaa cgctccctga cgctggcggg tttgttcttt atcgtaaaaa
      841 tgcagatgtt ggtatcgagc ataaacttca gcatcagaat gactcccttt cctgcatgcc
      901 gggctgttcc ctgttatcca taaaatcggc gctgacgctg tgtccgtcga accattcgtc
      961 ccatgtctct ccggctggcg taatgattct ggttcgtccg acagcaatca cttcaacgcg
     1021 ttttacgttt tccggcaatg caaccgcttt tggcagtctg accgcctggc tgcggttgct
     1081 gagaaatacg gtggtttcca ttatttgcct ccttatgtgg atatgtcttg tgtatatcca
     1141 ttgtgggatt gatgccggga tatgtcaaag ggatatacgt ttatgatgag tatcgcgcag
     1201 gtcagatcgg ccggaagtgc cggtaattat tataccaaca aggataatta ctatgtgctg
     1261 ggcagcatgg gagaacgctg ggccggccag ggggctgaac aactggggct gcagggcagt
     1321 gtcgataagg atgtctttac ccgccttctg gagggcaggc tgccggacgg ggcggattta
     1381 agccgcatgc aggatggcag taacaggcat cgtcccggct acgacctgac cttctccgct
     1441 cccaaaagtg tctccatgat ggccatgctc gggggggaca aacgtcttat tgaagcacat
     1501 aaccaggccg tggattttgc tgtccgtcat catccgtgtg gaggcactgg cctccacacg
     1561 gatgatgacg gacggacagt cagaaacggt gctgaccggt aatctggtga tggcactgtt
     1621 taaccacgac accagtcgcg atcaggaacc acagttacac acgcatgcgg tggtgactaa
     1681 tgttacgcag cataacggcg aatggaagac actgagcagt gacaaagtgg ggaaaacggg
     1741 gttcattgag aatgtgtacg ctaatcagat tgcctttggc aggctctacc gggaaaaact
     1801 gaaagagcag gttgaggcgc tgggctatga aactgaagtg gtcggtaagc acggtatgtg
     1861 ggaaatgccg ggtgtaccgg tggaggcctt ttccggacgc tcacagacta tccgggaggc
     1921 cgtcggggaa gacgcctcgc tgaaatcccg ggatgtggcg gcgctggata cgcgtaaatc
     1981 caaacagcac gtcgatcctg aagtcagaat ggccgagtgg atgcagacgc tgaaggaaac
     2041 cgggttcgac atccgggcat atcgtgacgc agcggaacaa cgggcatata cccgcacgca
     2101 gacacccgga cccgcttcac aggacgggcc ggatgtgcag caggcggtga cacaggccat
     2161 tgccggatta agtgaacgca aagtgcagtt tatgtatacg gacctgctgg ccaggacggt
     2221 cggcatactg ccgccggaaa atggtgtgat tgaacgggca cgcgccggta tcgatgaggc
     2281 catcagccgt gagcagctta tccccctcga tcgtgagaag gggctgttca cgtccgggat
     2341 tcatatgctc gatgagctgt cagtccgggc actcagtcgt gacatcatga aacagaaccg
     2401 ggtgaccgta catccggaga aaagtgtccc ccggacggcc ggttacagct atgccgtcag
     2461 tgttctggca caggaccgtc cgtcgctggc cattgtgtcc gggcagggcg gtgcagccgg
     2521 gcagcgtgag cgggtggctg aactggtcat gatggcccgg gagcaggggc gggaggtgca
     2581 gattatcgct gctgaccgtc gctcgcagat gaacctgaag caggatgaac ggctgtccgg
     2641 tgaactgata accggacgtc gtcagttgct ggaaggcatg gccttcacgc cgggcagtac
     2701 cgttatcgtc gaccagggcg aaaaactctc cctgaaagag acgttaaccc tgctggatgg
     2761 tgccgcacgt cataacgtac aggtcctgat aactgacagc gggcagcgaa ccggtacagg
     2821 cagtgcactg atggccatga aggatgccgg ggtgaacaca tatcgctggc aggggggaga
     2881 acagcgaccg gccaccatca tcagtgaacc ggaccgttat gtccgctatg cccggctggc
     2941 cggagatttt gcggccagcg tgaaagccgg agaagagagc gtggcacagg tcagcggagt
     3001 acgggaacag gccatactga cacaggccat tcgcagtgag ctgaaaacac agggcgtgct
     3061 cggacacccg gaggtaacca tgaccgccct gtcaccggtc tggctggaca gccggagccg
     3121 ttatctgcgg gatatgtacc gcccgggaat ggtgatggag cagtggaacc cggagacacg
     3181 cagtcatgac cgctatgtga cagaacgtgt gacggcgcag agtcacagcc tgaccctgcg
     3241 gaatgcgcag ggcgaaacgc aggtggtgcg tatttcttcc ctggacagca gctggtcgct
     3301 gttccggccg gaaaaaatgc cggtggcaga cggtgagcgt ctgagggtga cagggaaaat
     3361 tcccggactc cgcgtctccg gcggtgaccg cctgcaggtg gcatccgtca gtgaagatgc
     3421 gatgacggtt gttgtgccgg gacgggctga accggccacc ctgcctgtga gcgattcacc
     3481 gttcacggca ctgaagctgg agaacggctg ggtggaaacg cccgggcatt ccgtcagcga
     3541 cagtgcgacg gtttttgcct ccgtcacaca gatggcaatg gacaatgcca ccctgaacgg
     3601 tctggcccgc agtggtcgtg atgtccggct gtattcctca ctggatgaaa cccgtactgc
     3661 ggaaaaactt gcccgccatc cttcctttac ggtggtttct gagcagataa aggcgcgtgc
     3721 cggtgagaca ttgctggaaa ccgctatcag tctgcagaaa gccgggcttc acacgccggc
     3781 acagcaggcc attcatctgg cccttcctgt gctggaaagt aaaaacctgg ccttcagcat
     3841 ggtggacctg ctgacagagg cgaagtcgtt tgctgcagaa ggaaccggtt ttgctgacct
     3901 gggaggggaa atcaatgcgc agataaaacg gggtggttta ctgtatgtgg atgtggcaaa
     3961 aggctatggc acaggcctgc tggtttcccg tgcgtcgtat gaggcagaaa agagcattct
     4021 tcgccatatt ctcgaaggta aggaggcggt cacgccgctg atggagagag tacctggcga
     4081 actcatggag aaactgacat caggacagcg cgccgccgcc cgtatgatac tggaaacgtc
     4141 cgaccgtttc acggtggtgc agggctatgc cggtgtgggt aagaccacac agttccgggc
     4201 ggtgatgtca gccgtgaaca tgctgccgga gagtgaacgt ccccgtgtcg tggggctggg
     4261 gcccacacac cgtgcggtcg gggagatgcg cagcgccggc gtggatgcac agacactggc
     4321 gtcctttctg catgacacgc agctgcagca gcgcagcgga gaaacgccgg atttcagcaa
     4381 cacgctgttc cttctcgatg agagctctat ggtgggcaat accgacatgg cacgggcata
     4441 cgccctgatt gcggccggtg gcggtcgggc tgtggccagc ggtgacacgg accagctgca
     4501 ggccatcgcg cccggtcagc ctttccgtct ccagcagacg cgcagtgctg ccgatgtggt
     4561 catcatgaag gagattgtgc gtcagacgcc ggaactgcgg gaggcggtat acagcctgat
     4621 taaccgggat gtggaaaggg cgctgtccgg gcttgagcgt gtgaaaccgt ctcaggtgcc
     4681 acgtctggag ggcgcatggg caccggagca ctccgtgacg gagttcagtc acagccagga
     4741 agcgaaactg gcagaagcgc agcagaaggc gatgctgaaa ggcgaggctt ttccggatgt
     4801 ccccatgaca ctgtatgcag ccattgtccg cgactatacc ggcaggacac cggaagcacg
     4861 ggagcagacg ctgattgtca cgcacctgaa tgaggaccgg cgcgtactga acagcatgat
     4921 tcatgatgca cgggaaaagg ccggagaact ggggcaggtg caggtcatgg tgcctgtcct
     4981 gaacacagcg aatatacgcg acggggagct gcgtcgtctc tccacctggg agaataaccc
     5041 ggatgccctt gccctggtgg ataatgtgta tcaccggatt gccggtatca gcaaggatga
     5101 cgggctgata accctgcagg atgcggaagg taacacgcgg ctgatttcgc cccgggaggc
     5161 ggtggctgaa ggcgtcacgc tgtacacccc ggacaccatc cgggtgggga ccggtgacag
     5221 gatacgcttc acgaagagtg accgggagcg cggttatgtg gccaacagcg tctggacggt
     5281 gacagcggtt tccggtgaca gtgtcacact ttctgacggt cagcagaccc gtgtgattcg
     5341 ccccggtcag gagcgggcag agcaacatat tgacctggcc tatgccatca ccgcccatgg
     5401 tgcacagggg gcgagtgaaa cctttgccat cgcgcttgaa ggcacggaag gtaaccggaa
     5461 actgatggcc ggctttgagt cagcctacgt ggccctgtcg cgtatgaagc agcatgtgca
     5521 ggtgtacacc gataaccgtc agggctggac ggatgccatc aacaatgccg tacagaaagg
     5581 aactgcccac gatgtgtttg agccgaaacc ggaccgggag gtcatgaatg cagagcggct
     5641 gttcagtacg gcgcgggagc tgcgggacgt ggcggcaggc cgtgccgttc tccgtcaggc
     5701 ggggctggcc gggggagaca gtcctgcacg gtttattgct ccgggacgta aatatccgca
     5761 accgtatgtg gcactgccgg cgtttgaccg taacggcaag tccgccggta tctggctgaa
     5821 cccgctgacc acggatgacg gaaacgggct gcggggattc agcggtgaag gtcgggtaaa
     5881 aggcagcggg gatgcgcagt tcgtggctct gcagggcagc cgtaacggag aaagcctgct
     5941 ggctgataat atgcaggatg gcgtccggat tgcccgtgat aatcctgaca gtggtgtggt
     6001 ggtaagaatc gccggtgaag gccgtccgtg gaatcccggt gccatcaccg gtggccgcgt
     6061 gtggggggat atcccggaca acagcgtcca gccgggagcc ggaaatggcg aaccggtcac
     6121 ggcagaggta ctggcacagc ggcaggctga agaggccatc cgccgtgaaa cggaacgtcg
     6181 cgcagatgaa attgtccgta aaatggcaga gaacaaacct gacctgccgg acggcaaaac
     6241 agagcaggct gtcagggaaa ttgccgggca ggagcgtgac cgggctgcca taactgaacg
     6301 ggaagccgcg ctgccggaga gtgtactgcg tgaaccacaa cgggtgcggg aagcggtccg
     6361 ggaagttgcc cgggaaaatt tgctgcagga gcgtctgcag cagatggagc gggatatggt
     6421 tcgtgacctg cagaaagaga aaaccccggg cggagactga tacaggaaga caaacactga
     6481 tgacaacgga taacacgaac acgacacgta acgattcact ggctgcacgg accgatacct
     6541 ggttgcagtc atttctggtc tggtcacccg gacagcggga tatcatcaaa acggtggcac
     6601 tggtgctgat ggtactggac cacatcaatc tgatattcca gctgaagcag gaatggatgt
     6661 ttctggccgg gcgaggagcc tttccgcttt ttgccctggt gtgggggctg aatctgtccc
     6721 gtcatgcgca tatccggcaa ccggccatta accggctgtg gggatgggga attattgccc
     6781 agttcgcata ttatctggca ggctttccct ggtatgaggg gaatatcctg tttgcctttg
     6841 cagtggcggc acaggtgctg acgtggtgtg aaacgcgcag tgggtggcgt acagcagcgg
     6901 ccatactcct gatggccctg tgggggcctt tgtccggcac cagttacggt attgccgggt
     6961 tgctgatgct ggcagtcagc aaccggctgt accgggcgga agacagagcg gaacgtctgg
     7021 cgctggtcgc ctgcctgctg gctgttattc cggcgcttaa ccttgccacc agtgatgcag
     7081 cggcggtggc cggtcttgtg atgacggtgc tgaccgttgg tctggtgttg tgtgccggaa
     7141 aatcattacc ccgtttctgg cccggagact ttttcccgac gttctatgcc tgtcatctgg
     7201 ctgtgctggg cgttctggcg ctgtgacggg tgtggtatct ttggccgcaa gaggatgatt
     7261 cgtcagaggc agaacacagc atgacagagc agaagcgacc ggtactgaca ctgaagcgga
     7321 agacagaggg aacagcgact gtccgcagcc ggaaaaccat catcaatgtc accacgccac
     7381 caaagtggaa ggtgaaaaag cagaagctgg ccgagaaagc ggcccgtgaa gcagagctgg
     7441 cggcaaaaaa agcgcaggcc agacaggcgc tgtccattta tctgaacctg cccacgctgg
     7501 atgaggctgt gaataccctg aagccctggt ggccgggatt atttgacggt gacacgcccc
     7561 ggcttctggc ctgcggtatc cgggacgtgt tactggaaga cgtggcgcag cggaatatcc
     7621 cgctctcgca taaaaaactg cgcagggcgc tgaaggccat cacccgttca gaaagctatc
     7681 tgtgtgccat gaaagccggt gcctgccggt atgacacgga agggtatgtg acggagcata
     7741 tttctcagga ggaggaagcg tatgcgggag cgcgtctggc gaaaattcgt cgccagaacc
     7801 ggataaaggc agaacttcag gccgtgcttg atgagaaata aaaaaagcct cccccagaga
     7861 gaggaggcag ggaaataagg cttaaaagga aataacttcc gcttccgaaa ggaagccagt
     7921 ccactgaatt atttatcaca ataatactga caactaaagg gggacaagaa aatgaatgga
     7981 ttcagaaaca gttcacggaa cggccaggtc tggcgttacc agcgtgccgg cgggcgggcc
     8041 gttattctgg aagtcagtgg acgctggatg gaagcggcag aagcatggcg acgggctgcc
     8101 tgtgttgcgc ctaggacaga ctggcagcag tttgcccgga aaagggctga acactgccac
     8161 cggcgctgcc ggggaagggg gtaacgaaaa aagcagcctt cattactcca ggagtcagaa
     8221 ggctgaaagg agtttatgag atttgcttct taatatccgg tcgggcagta tgaccggaca
     8281 gttctgagta gcacagagtc ttttccgcat taagtcgatt ttttatattt tgtgattaat
     8341 ttcacaaaat aaggtgttat tcaatgtgtg ctgccctatt caggggggct gaaatacagg
     8401 tgccatttat ctgatatgga gaataacatg aggaaatata ttccactggt attatttatc
     8461 ttttcatggc cggtattgtc tgcagatatt catggacggg ttgttcgtgt actggacggt
     8521 gataccatcg aggtcatgga ctcactgaag gcggtgcgga tcaggctggt aaatattgat
     8581 gcaccggaaa agaaacagga ttatggccgg tggtcaacag acatgatgaa atcactggtt
     8641 gcaggaaaaa cggttaccgt cacatatttt cagcgagatc gttatggtcg tattctcggg
     8701 caggtttatg caccagacgg aatgaatatt aatcagttta tggtccgggc cggggctgcc
     8761 tgggtatatg agcagtacaa cacagatccc gtgctacctg tccttcagaa cgaagccaga
     8821 caacaaaaac gtgggctctg gtcagatgct gatccggttc ccccctggat atggaggcac
     8881 cgtaaataaa gcgatggcaa tcctatcatt catctgttct cagcgggaat aaaaatggca
     8941 aaaacaaaac aggaatggct gtatcagtta cggcgatgtt catcagtcaa tacgctggaa
     9001 aaaattattc ataaaaacag agacagttta tcaaacagtg aacgtgaatc atttaattca
     9061 gcagcagacc accggctagc ggaattaatc atcggaaagt tatatgacag gataccaaaa
     9121 gagatatgga aatatgtaag gtaataattc agcaataatt aattgccagg agcagataaa
     9181 taatgaagtt gattattttt attctcattg ttctgattat tgcagcgcta cttatccgga
     9241 ttatcctcag aagtgtaaat cagcattctc ctttgctgat gcaattgcat gcggcaggta
     9301 tacggaccgg tgatgcagag cgaatactgt ccagcggtga atactggcaa cgtcagacga
     9361 cgctgctgac agaaagggaa gtcagtttta tgaaaggact gttcagaatt gtggatatga
     9421 cgcggtggta tctgtgtccg caggtacggg tcgcggatat cgtccagctg aacgggaata
     9481 tccggccacg atcacgccag tggtggcagt tattcaggat ggtgtctcag tggcatgttg
     9541 atgtggttat cgttgagctg cgttcgttca gtattgttgc agcagtagag ctggatgatg
     9601 ccagccattt acgaccggaa cgcagacgcc gggatattct tctggaagag gttctgaggc
     9661 aggctggtat tccgttgctc agaagccacg atgccagaaa actgctgcag atgaccggag
     9721 aatggctgaa tacaaca
//
LOCUS       DAJVUY010000159         9725 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.159, whole genome shotgun sequence.
ACCESSION   DAJVUY010000159 DAJVUY010000000
VERSION     DAJVUY010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9725
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.159"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            120..740
                     /gene="fklB"
                     /locus_tag="OQQ72_003460"
     CDS             120..740
                     /gene="fklB"
                     /locus_tag="OQQ72_003460"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS2013067.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            1049..2461
                     /gene="cycA"
                     /locus_tag="OQQ72_003461"
                     /gene_synonym="dagA"
     CDS             1049..2461
                     /gene="cycA"
                     /locus_tag="OQQ72_003461"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HCS2013068.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFLG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(2506..3168)
                     /gene="ytfE"
                     /locus_tag="OQQ72_003462"
     CDS             complement(2506..3168)
                     /gene="ytfE"
                     /locus_tag="OQQ72_003462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HCS2013069.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYNMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(3276..4241)
                     /locus_tag="OQQ72_003463"
     CDS             complement(3276..4241)
                     /locus_tag="OQQ72_003463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS2013070.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLAWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIVVRAKPEKPLTESVSES"
     gene            complement(4349..5209)
                     /gene="qorB"
                     /locus_tag="OQQ72_003464"
     CDS             complement(4349..5209)
                     /gene="qorB"
                     /locus_tag="OQQ72_003464"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HCS2013071.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            5298..5678
                     /locus_tag="OQQ72_003465"
     CDS             5298..5678
                     /locus_tag="OQQ72_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS2013072.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDERAA"
     gene            complement(5807..7750)
                     /gene="cpdB"
                     /locus_tag="OQQ72_003466"
     CDS             complement(5807..7750)
                     /gene="cpdB"
                     /locus_tag="OQQ72_003466"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HCS2013073.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS
                     GKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD
                     GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDRHIAFASPDE
                     NRSVLTAWIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKG
                     QYPMNKVATDDIGFAIYQVDLSK"
     gene            7940..8680
                     /gene="cysQ"
                     /locus_tag="OQQ72_003467"
     CDS             7940..8680
                     /gene="cysQ"
                     /locus_tag="OQQ72_003467"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HCS2013074.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
     gene            8892..>9725
                     /locus_tag="OQQ72_003468"
     CDS             8892..>9725
                     /locus_tag="OQQ72_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013075.1"
                     /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNNFFNNIQHAFKKKDWV
                     SNYDSLLTLWEFFRCATQIDKDSYQVLSSKNETVKAMDKFLISFSLKDNGAEYTMTLR
                     GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQ
                     AIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLG
                     FALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAGCQQVELAEQVDAIVSANLAVDS
                     DI"
BASE COUNT         2363 a         2353 c         2487 g         2522 t
ORIGIN      
        1 gatattgcta ttgtttcttt ttccccggga tttgtcatca ttcctgtgac aaagttttac
       61 ccaaagaagt gtggctgata tgctgcccgc tacttttata ccctaagaaa ggaaatacga
      121 tgaccacccc aacttttgac accatcgaag cgcaagcaag ctacggcatt ggtttgcagg
      181 tagggcaaca actgagtgaa tctggcctgg aagggctgct gccagaagca ctggttgcag
      241 gtattgccga tgcgctggaa ggcaaacatc cggctgttcc ggttgatgtg gtgcatcgcg
      301 cgctgcgtga aatccacgaa cgcgccgatg ccgttcgtcg tcagcgtttc caggcgatgg
      361 ctgctgaagg tgtgaaatac ctggaagaaa acgccaaaaa agaaggtgtg aatagcaccg
      421 aatctggcct gcaattccgc gtgatcaacc agggtgaagg cgcaattccg gcacgtaccg
      481 accgcgttcg tgttcattac accggtaaac tgatcgacgg caccgtgttt gacagctccg
      541 ttgctcgtgg tgaacccgct gaattcccgg ttaacggcgt gatccctggc tggattgaag
      601 cactgactct gatgccggta ggttctaaat gggaactgac tatcccgcag gaactggcat
      661 atggcgagcg cggcgcaggt gcatccatcc ctccgttcag caccctggtg tttgaagtcg
      721 aactgctgga aatcctctaa gcagcgcatt ctgttcccct cgaaccagag gggagcaggc
      781 attcagcaat aaacccttca gtttgccaaa cggcgctatt ttgtgttgca aagaccccgt
      841 aagcgtgtat ttttgtgaga tgtttcgcgt tatcaccgtg atatgacact cactttaaac
      901 ataaaattaa cattagatct aaatcttagt attcatcccg cgtattgtta cctaatatcg
      961 atgagtcccg atacagattc gtcgtatcat agactgacta aaggccgtag agcctgaaca
     1021 acacagacag gtacaggaag aaaaaaacat ggtagatcag gtaaaagtcg ttgccgatga
     1081 tcaggctccg gctgaacagt cgctacggcg caatctcaca aaccgacata ttcagcttat
     1141 tgccattggc ggtgccattg gtacggggtt gtttctgggg tctggcaaaa cgattagcct
     1201 tgccgggccg tcgatcattt tcgtttatat gatcattggt tttatgctct ttttcgtgat
     1261 gcgggcaatg ggggaattgc tgctttcgaa tctggaatac aaatctttta gtgacttcgc
     1321 ttccgattta ctcgggccgt gggcaggata tttcactggc tggacttact ggttctgctg
     1381 ggttgtaacc ggtatggcag acgtggtggc gatcacggct tatgctcagt tctggttccc
     1441 cgatctctcc gactgggtcg cctcgctggc ggtgatagtg ctgctgctga cgctcaacct
     1501 tgccaccgtg aaaatgttcg gtgagatgga gttctggttt gcgatgatca aaatcgtcgc
     1561 catcgtgtcg ctgattgtcg tcggcctggt catggtggcg atgcactttc agtcaccgac
     1621 tggtgtggaa gcgtcattcg cgcatttgtg gaatgacggc ggctggttcc cgaaaggttt
     1681 aagtggcttc tttgccggat tccagatagc ggttttcgct ttcgtgggga ttgagctggt
     1741 aggtacaaca gctgcggaaa ccaaagatcc ggagaaatca ctgccacgcg cgattaactc
     1801 cattccgatc cgtatcatta tgttctacgt cttcgcgctg attgtgatta tgtccgtgac
     1861 accgtggagt tcggtagtcc cggagaaaag cccgttcgtt gagctgtttg tgttggtagg
     1921 tttgcctgcg gctgccagcg tgatcaactt tgtggtgctg acctctgcgg cgtcttccgc
     1981 taacagcggc gtcttctcta ccagccgtat gctgtttggt ctggcgcagg aaggtgtggc
     2041 accgaaagcg ttcgctaaac tttctaagcg cgcagtacca gcgaaagggc tgaccttctc
     2101 ctgcatctgc ctgctcggtg gcgtggtgat gctgtatgtg aatcctagcg tgattggtgc
     2161 gttcacgatg attacaaccg tttccgcgat tctgtttatg ttcgtctgga cgattatcct
     2221 ttgctcgtac ctggtgtacc gcaaacagcg tcctcatctg catgagaagt cgatctacaa
     2281 gatgccgctc ggcaagctga tgtgctgggt atgtatggcg ttctttgtgt tcgtggtcgt
     2341 gttgctgaca ctggaagatg acactcgcca ggcgctgctg gttaccccgc tgtggtttat
     2401 cgcactgggg ctgggctggt tgtttattgg taagaagcgg gctgctgaac tgcggaaata
     2461 accgcattat catgctggat ggcgcaatgc catccagctt ttagatcact cacccgccag
     2521 cgcgcgtggg aacagtacat tgttttccag actgatgtga tccatcaggt catcaatcag
     2581 ttcattaatg ccgttataca tcgctttcca ggtggtgcag gcttctggcg gcggtgtgac
     2641 gttattggta gtgtgtttga tcacttccag cagttcgccc gcttcatcgt gctcgctttc
     2701 cattacgctg attggcccca ttgcctggct gcccatgcct tgtttgatca tcgggaagag
     2761 gatctgctct tctttcatca tgtggctgga aagctcttca tgcagcatgg tcaggtattt
     2821 tgtcagccct tttggcacgc tcggtttgtc ggcgtgaacg cgctcgactt tagtcgcttg
     2881 caggatcagc tccggcagtt gctcgcggtg acgatcgtgg tagcgcacga tgatatggtc
     2941 aatgatttct gccagcgggg cgctacgcca gtctttctca atcggttgtt cagcaagctt
     3001 tgccagttca gcttcaatga cctcaacatc cagttcttta cgtgccgccg cgcgcgccag
     3061 cgtctgctta ccgccacagc agtaatccat attatattta cgaaacagag ctgaagcgcg
     3121 aggaatagag agcgccagtt cacctaaagg ttggtcgcga taagccatag ctgatacctc
     3181 attcttaata agataagatg tattttaaat acatctttaa ggcaaaagct ataaccctta
     3241 cgtagcagag gcttatttaa ctcacagcca gtatgtcaac tttctgagac agattcagtt
     3301 aaaggctttt ccggttttgc tctgactaca atgaccacgc caaccactaa cagcgcgata
     3361 ccgctcagcg tcatcagcgg cggcatttgc tggcgtatca aaaaggtgta cagcaaacct
     3421 gccagtgttt cgaaaacgat cagcggcccg agaatcactg tcggtaatcg ctggctggcg
     3481 acgttccagc agagtgcgcc aacccatgag caaagcacgg ctatcgcaac catcagacta
     3541 ataaacacca gcggacgggg gccaaaaggt agggagaagt ccggcgtttg cgtattcagc
     3601 cagtaacagg cgacgagata gccgatgaga gaaaccggca gtgtgaccag cgcctgcgcc
     3661 gtcgcccaca tcatcggatg tttgtcggga ttctcccgca gccagcgggc gttgcgcagg
     3721 gcataccatg cccagcagac cacggaaact aacgctagca cgatgcctga ggtataacgt
     3781 gcccagtcaa aatcggggag tccgtggttt aactcagcaa tattcacaca cgccaggccg
     3841 atgccaatac aaaccagtgc cggggcgagt tttccccacg cgagtttgcc gtcgcgctgg
     3901 ctataaagca gattggcaaa aacgggaatc accaccggca gggtgccgat aatcatcgtg
     3961 gaaacaggcg caccagtacg ttgaatggca ctggcaaggc agaagtaata gatgaggttg
     4021 cccatcatag tgagcatcaa ggcggtaagc cagtcgcgac gcgccaactg acgcagacgc
     4081 acgcgtccca gccaggcaat gggcagcgca attaacccta acgccagata acgccccatc
     4141 gactgcaaca tcgccgggta ttccggtacg atcaacggcc cgacaaaaat aagcccccac
     4201 atcaaccctg ctaacagggc gtacagcacg ccgctaatca ttactggcat ccattggtct
     4261 gtcagaagaa agttcaggaa gcagacatga ttgctcccgg catcccgtca ttattagaga
     4321 ggatgcggga ggatgccact ttaattaact agttattaac attaaaaaga tggcttacgc
     4381 tttcggctaa cgttgtcgtt gggcggccaa tcaatttgct aagcgttttg ctgttatcaa
     4441 acagaccacc tttcgatgcg ccaacgtcag aatccgccag catatccgcc agtccgtcgg
     4501 gcagtccgac gcttttcagt gccgcggcga aatcggcttc gctcagattt tgataggtaa
     4561 cctgtttgcc gctctgtttg gtcagctctg ccgctaactg tgtcaacgtc caggcactat
     4621 cgcccgccag ttcgtaaacc ttgccttcgt gaccggcttc gctaatcacg cgtgccgcag
     4681 ctgccgcata atctgcccgc gttgctgagg cgattttgcc atcgcccgcc gcaccgataa
     4741 atacgccgtg ttccagtgct gccggggcgc tggcgaggta gttttcgctg taccagccgt
     4801 tgcgcagcag ggtgtaaacg atgccagaat cagccaacat tttctccgtc tcaatgtgct
     4861 catcggcgag gccgagcggg gaggtatctg catgtagcag gctggtataa gcgataaatt
     4921 tcacgccagc cgcctttgcg gcattaataa cattacgatg ctgcggggca cgttgaccca
     4981 cttcgctgga agagatcagc agtagttttt ccactccctg aagtgcagat gtcagtgcgg
     5041 cttcatcgcc gtagtcagcc tgacgcacgg taatgccttg tgctgccaga gcctgggctt
     5101 ttgccggatt acgaacgata gccactattt ggctggcagg aaccgttttc atcaaggatt
     5161 caataatata gtgaccaagt tggccagtgg caccagtaat agcgatcatg ggaagtctcc
     5221 atcgttttgt cttgtgttta aatacgctaa cacctaaact tacttttagt aagtacgtac
     5281 aaaaaggtaa gtatgaaatg agtcaggtta gcctgtcgca acaactgaaa gagggtaatc
     5341 tctttgcgga acagtgcccg tcgcgcgagg tgttgaaaca cgtcaccagc cgttgggggg
     5401 tgttgattct ggtggcgcta cgcgaaggta ctcatcgctt tagcgacctg cggcgcaaaa
     5461 tcggcggggt gagcgaaaag atgcttgcgc agtcgttaca ggcgttagaa caggatggtt
     5521 ttcttaaccg tatcgcgtat ccggtggtgc caccgcatgt ggaatatagc ctcacgccgc
     5581 tgggcgagca ggtgagcgaa aaggttgctg cactggcgga ctggattgag ttgaatttgc
     5641 ccgaggtgtt ggcggtgcgg gatgaacgtg cggcataact gccggatgcg ctgagcttat
     5701 ctggtctacg gtgcatggct ggtagggcgg ataagatgcg ccagcatcgc atccgccaat
     5761 aaatgccgga tgcggttgat aatttataga ccgaaaaaga agtgttttac ttactcaaat
     5821 ccacctgata aatcgcaaac ccgatatcat cggtcgcgac tttattcatc ggatattgcc
     5881 ctttctcttt aataaacgct gcggctttat ctgacgggga agtttcgaaa cggatatcca
     5941 gtttcttatc gccagctatc ggtgctaaac gccagttgtt atctgccgcc gggtgaattt
     6001 ctcccgcacg tttcgactca tcagcaatcc acgctgtcag caccgagcgg ttctcatccg
     6061 gtgaagcaaa agcgatatgt ctgtcgcccg taccggcaaa tttgccgccg taagcgcgat
     6121 agttattggt ggcaacgagg aacatagcgt tcggatcaat cggcttgcca ttaaaggtca
     6181 ggttcttaat ccgctctgca ttggcattaa tcatctggca ctcgccgtca tagcgggcgg
     6241 gttgggtaac atcaatctga taattcacac catcaataac atcaaagtta taagtgcgga
     6301 aaccatccca gttgatgagt gactgtggtt tcgtgctgtt aggatcaatc tggttaaact
     6361 gtccggcgga gcactccagc cactctttca cctctttacc gctggctttc actacaatca
     6421 gcgtattggg gtagagataa agatcggcgg cattacggaa ggtcaactgg cctttttcca
     6481 cctccacata gcttgccggg tcatttttgc gaccaccaac tttaaacggt gcggcagctg
     6541 aaagcaccgg cagttttgcc agatccggat cgccctgaat gtaatgttcg acatacgctt
     6601 tttgcgcgtt gttcacgact tgcacggtcg gatcgtcctg caccagcgcc agatagctat
     6661 acatattgtc ggcagattta ccgattggct tgctgacgaa ctggcgtgtg gcatcgtgat
     6721 cggctttgag tgtttctacc agcttgctgt cttccgccgc gagggatttt ttattggcga
     6781 tgtcgtaaat cggccgtgct tccgctttcg cctgcgtcac ctgccattta ccgctgtcat
     6841 tactgagttg taagtcgacc accccaagat gatcgcccca catgcccggc attaccgccg
     6901 gaacaccatt cagcgtgcct ttggtgatat cagcctcttc gatatcagca aaatctttac
     6961 ccgggaaaac ggcgtgagca tggccaaaca taatggcgtt aacgcccgga atttcactga
     7021 ggtaataaac tgagttttcc gccattactt tatacggatc ggcagacagc ccggaatgcg
     7081 ccagaacgac aacgacatcg gcacctttct cgcgcatttc aggcacgtat ttgcgcacgg
     7141 tttcggtaat atcattcacc gtcacttttc cggataaatt agctttatcc cagcccatga
     7201 tttgcggcgg cacgacgcca atatagccaa tcttcagcgt ctgttttttt ccgtctttat
     7261 cgaccacttc ggtatcttta attaaatacg gtgtaaacat tggctgtttg gttctggcgt
     7321 caatgacgtt ggcatttaca taagggaatt tcgctcccgc cagcgcattt ttcaggtaat
     7381 ccagaccgta gttaaattca tgattgccga gtgtaccgac cgtataatcc agcgtattca
     7441 gcgccttata aaccggatga acatcacctg cttttaatcc tttcgccgac atgtaatcgg
     7501 ccagcggact cccctgaatc aaatcgccgt tatcgaccag tacgctgttt ttcacttcat
     7561 tgcgggcatc gttaatcagg cttgccgtac gtaccagtcc gaatttttcc gtggcggtgt
     7621 ctttgtaata atcgaaatcc atcatgttgc tatgcagatc agtggtttcc atgatacgca
     7681 gatcgaccgt cgctgcattc acactggcgg caatcagcgt ggccaggagc gttgcgctaa
     7741 acttaatcat cagggacatc cttttatcat cgggaatacg aaagaaaagg gagaataaac
     7801 gtcttactta tagaacagtg aagaatgcca caattttacg ctttgaaaat gatgacacta
     7861 tcacagttgg cgcattcatt aacgataggg tataagtaaa acaataagtt aacaccgctc
     7921 acagagacga ggtggagaaa tgttagatca agtatgccag cttgcacgga atgcaggcga
     7981 tgccattatg caggtctacg acgggacgaa accgatggac gtcgtcagca aagcggacaa
     8041 ttctccggta acggcagcgg atattgccgc acacaccgtt atcatggacg gtttacgtac
     8101 gctgacaccg gatattccgg tcctttctga agaagatcct cccggttggg aagtccgtca
     8161 gcactggcag cgttactggc tggtagaccc gctggatggt actaaagagt ttattaaacg
     8221 caatggcgaa ttcaccgtta acattgcgct cattgaccat ggcaaaccga ttttaggtgt
     8281 ggtgtatgcg ccggtaatga acgtaatgta cagcgcggca gaaggcaagg cctggaaaga
     8341 agagtgcggt gtgcgcaagc agattcaggt ccgcgatgcg cgcccgccgc tggtggttat
     8401 cagccgttcc catgcagatg cggagctgaa agagtatctg caacagcttg gcgaacatca
     8461 gaccacgtcc atcggctctt cgctgaaatt ctgcctggtg gcggaaggac aggcgcagct
     8521 gtacccgcgc ttcggaccaa cgaatatttg ggacaccgcc gctggacatg ctgtggccgc
     8581 agctgccgga gcgcacgttc acgactggca gggtaaaccg ctggattaca ctccgcgcga
     8641 gtcgttcctg aatcctgggt tcagagtgtc tatttactaa attcagatgg cagaaacagt
     8701 gtatttcctg attctgccat cctgatttct cccaacctaa aaagttataa ataaaaagag
     8761 attgtattta aagtgcaaaa attcaattgc taataagtta cattttaata atgagcgttt
     8821 tttgatagtt tacttctata atgagatatt taatggcgac ataaaataac caaataaaat
     8881 aaggtagcca tatgttaccc aggatcagac acaataattt tattggtgcg gtggagttat
     8941 tcgtaaaatc atcgcataca aaaacacatt caaacaattt ttttaataat attcagcatg
     9001 catttaagaa aaaagattgg gtttcgaatt atgatagcct gttaactttg tgggagtttt
     9061 ttcgttgcgc aactcagatt gataaagata gttatcaagt gctttcatca aaaaatgaaa
     9121 ctgttaaagc catggataag tttcttatca gtttcagcct taaagataac ggtgccgaat
     9181 atacaatgac attgcgaggc agtggatttg aatacgaaga aatccccata acaataaatg
     9241 agtataactc attcatggat ttcaaaaacc gtgaatttcc gttagaacaa aacagaagat
     9301 tgtatgcttg ggatattctg cagaaaaaac agtctgacat accgaaaagg attaaaggtt
     9361 atattcacca ggcgattggt gacgtgtctt taggttatgc cttattggag gatatagtaa
     9421 gcaaattaaa acggggtaaa tttgaactcc aaataccagg aggtggaatt aaagaatgcg
     9481 atggatggta tatttacgaa aaaataattg atgataattt tgccatagtc atagaatctt
     9541 tgggctttgc gcttaaaatc tatggagggg atgaacgttt tcgtaatggt tcctctgttg
     9601 ttttggagga tgaagattac tctcttattt ataattttct ggttaatgca ggttgccaac
     9661 aagtcgaatt agccgaacaa gtggatgcga tagtaagtgc gaatctggcc gtagatagtg
     9721 atatt
//
LOCUS       DAJVUY010000160         9651 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.160, whole genome shotgun sequence.
ACCESSION   DAJVUY010000160 DAJVUY010000000
VERSION     DAJVUY010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9651
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.160"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..1091)
                     /gene="fdeC"
                     /locus_tag="OQQ72_003469"
                     /pseudo
     CDS             complement(1..1091)
                     /gene="fdeC"
                     /locus_tag="OQQ72_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308363.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="intimin-like adhesin FdeC"
     gene            2207..2308
                     /locus_tag="OQQ72_003470"
     CDS             2207..2308
                     /locus_tag="OQQ72_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013076.1"
                     /translation="MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY"
     gene            2672..2935
                     /locus_tag="OQQ72_003471"
     CDS             2672..2935
                     /locus_tag="OQQ72_003471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HCS2013077.1"
                     /translation="MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPY
                     VTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGS"
     gene            2935..3075
                     /gene="ykgO"
                     /locus_tag="OQQ72_003472"
     CDS             2935..3075
                     /gene="ykgO"
                     /locus_tag="OQQ72_003472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HCS2013078.1"
                     /translation="MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK
                     KR"
     gene            complement(3110..3337)
                     /locus_tag="OQQ72_003473"
                     /pseudo
     CDS             complement(3110..3337)
                     /locus_tag="OQQ72_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414829.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4160..4702
                     /gene="ecpR"
                     /locus_tag="OQQ72_003474"
                     /gene_synonym="matA"
     CDS             4160..4702
                     /gene="ecpR"
                     /locus_tag="OQQ72_003474"
                     /gene_synonym="matA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECP biosynthesis operon DNA-binding
                     transcriptional regulator EcpR"
                     /protein_id="HCS2013079.1"
                     /translation="MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD
                     FVFINLNTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG
                     LSRDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV
                     YTHRRNAEAKLYSKIYKLVQ"
     gene            4728..5363
                     /gene="ecpA"
                     /locus_tag="OQQ72_003475"
                     /gene_synonym="matB"
     CDS             4728..5363
                     /gene="ecpA"
                     /locus_tag="OQQ72_003475"
                     /gene_synonym="matB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="common pilus major fimbrillin subunit EcpA"
                     /protein_id="HCS2013080.1"
                     /translation="MTHWDITSSIQLGKKCNEKKVLAIALVTVFTGMGVAQAADVTAQ
                     AVATWSATAKKDTTSNLVVTSLGSLAFQYAEGIKGFNSQKGLFDVAIEGDSTATAFKL
                     TSRLITNTLTQLDTSGSTLNVGVDYNGAAVEKTGDTVMIDTANGVLGGNLSPLANGYN
                     ASNRTTAQDGFTFTIISGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS"
     gene            5421..6089
                     /gene="ecpB"
                     /locus_tag="OQQ72_003476"
                     /gene_synonym="yagY"
     CDS             5421..6089
                     /gene="ecpB"
                     /locus_tag="OQQ72_003476"
                     /gene_synonym="yagY"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone EcpB"
                     /protein_id="HCS2013081.1"
                     /translation="MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNS
                     TDSGRLINIRLERLSSPLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPAD
                     EKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLT
                     NTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKF
                     IPVK"
     gene            6115..8638
                     /gene="ecpC"
                     /locus_tag="OQQ72_003477"
                     /gene_synonym="yagX"
                     /pseudo
     CDS             6115..8638
                     /gene="ecpC"
                     /locus_tag="OQQ72_003477"
                     /gene_synonym="yagX"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher EcpC"
     gene            8628..>9651
                     /gene="ecpD"
                     /locus_tag="OQQ72_003478"
     CDS             8628..>9651
                     /gene="ecpD"
                     /locus_tag="OQQ72_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial adhesin EcpD"
                     /protein_id="HCS2013082.1"
                     /translation="MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENN
                     SDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDM
                     WLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLS
                     DAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANL
                     RLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSLSGLSCKMVNYTLQTNGLSNTSI
                     HIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNF
                     FKQMVNL"
BASE COUNT         2624 a         2369 c         2256 g         2402 t
ORIGIN      
        1 atacggatca cttcagattt gcggtactca agaacgatgt tgttattacg ctcaaccagg
       61 tcatagcggc tgcctgccag cattcgacgc tcgcgaatgc tgtctgtatc gagttgtttc
      121 tccagaggtt cgccaatccg ataattaact tccaggccaa agcgagtgtc attctcccca
      181 ctcttgccct gcttatgccc ggcactcagg gtcagaagag gcacaggcgt gtaattcact
      241 tcagcggaaa tcgcatgtgg atctttctgg cgtttatctt tgccaaacag cccaacttca
      301 tcgccataat actgctcata catcaggctt gcgccaagct gcggtcaggc gggtaaatag
      361 ccctcagcac gaatatccca gccattcgcc gggcgttcct gataatcctc aatatccggc
      421 gattttttcc agccagaagc ccgaatataa ccattggcgc tcagtttcag ataatcgcgc
      481 cagtattccg caccaacacc aatgcgggta tgactacggg ataaatcatg gtcgataaag
      541 gtgttcaccc cccccattca gtcatttcct gaaaaatgac gccagccaaa accaatattt
      601 gactgagtac gatcgtctgt acgatgtatt gccccctgag tgaacaacat atttgtcggc
      661 gtatcataaa tcggataaag catttccagc gaagaatcct tcagcgagaa atctttatcg
      721 acattcagtt tgacgcgcgc tgtaccatat ttcccgagcc actcctgtat ttcctggtta
      781 gctttagcgg tggccattcc ggtaataaaa ttacgtgtcg catcgctatc tggctgactg
      841 cttaaaaatg tcccggcatt tgcggcaaac gacgcgacat ttttctccac gttattatca
      901 gcagttaccg tagtatttcc catgctcaac cgtggctgaa ccgcatgctg cgcacgtgcc
      961 gccattactg gggtaaaggt gacagcgagt ggaaaaagaa cctgaacaga gatatttgcc
     1021 cacgccacgc agcgggccag aactgaataa cgaaatcgtg gttgtttatg acctgtttta
     1081 taacgtgaca ttgagataat ttcctgatga acgaattaac gaacataggc agacacaaat
     1141 aatggcgtct gcttgtcaga aaaaccgggg atttcccggt ttccttttcc gcagaaaagg
     1201 aaataccttt atgtaagaaa gtgcaccgcc acctgatata tccagtgtct gtagccactc
     1261 atcaggtggt tgggcgcggg attatatttt tatttatggg taaaaattta gctttttgtg
     1321 caagtcatta aatagatacc taagttatat ttcttactct gcggacagtg aataattcat
     1381 tattcagact gaataataat gacctgcctt taattagcaa ctattggaaa tacgtcgaag
     1441 taggtatata cgccaggata aaccgatata tttattatgg atattcattt tccttcatcg
     1501 gactgtaaat tgcggggata tcgaacttac actactcatc gcaacactca aacagattta
     1561 tgaatttcgt tcataacccc tgacaaatcc tgccgtctaa tcgagctttt ccctttacgt
     1621 tatgcttctc atgaacgaga acacaactta ttcatgaatt aaccattccg gataaactat
     1681 ggaatcaaat tcaggcatcg aaaggaactg gctggtttcc gttaatagat taaatatcta
     1741 ttactctccc gagagtaaaa ctatcaaatc aatgagtaac cgatacagcc tcacaaattc
     1801 tttcagataa ttaacccgtc actgcggcac gttctctcgt aaggcgtgcc tgcagtgtaa
     1861 tccagtatgt atccggcata gttgacggtt taatagaact caattcctct ccctggtcac
     1921 caacaacgat atcttgtata acaccccagg agatacgaca ttatgatgag atgcgatatg
     1981 ctcctcagca ccaatcaacg ccaggactgg gccagtcttg agatcagact cattcccggg
     2041 actgacttca gtcgacatat atcaatgacg ttggtgcaat aaaagatagc cgatgtaata
     2101 catctattca aatttgtgat acatgtcaaa aaactggttg accaaactcg ttatttatat
     2161 aagggcactt acgaagtgcg ctctttttta aagcgaggaa gtaccaatga aagagaataa
     2221 agtacaacaa atcagtcata aactaattaa tatcgttgtt tttgtcgcaa ttgtagaata
     2281 cgcctattta tttctccatt tctattaata acggcaataa actgttcact tcagtgatat
     2341 ttaaaatatg cattctctcc ctttttgtaa gtaattatta tatccgtggg agaggaatac
     2401 acgctgtcag gtaatcaatc atactgcgat aaatcatcgg ccagtaaagt ggagataacc
     2461 tccattgtcg aaaaatccat actctcagcg aaaccatcat caatcactca tccaggcgtt
     2521 tatgggagcg tcgccaacgg ctgttaacaa tgccagactt ccccgttgcg gaaattccac
     2581 ataccactaa tggtcacagg gattgggtgt tgaaatgatc cggatgagca tgtatcttta
     2641 tggttatgct ataacataac aggtaaaaat gatgaagccc aatatccatc ctgagtatcg
     2701 tactgtggtg ttccacgaca ccagtgttga tgagtacttt aaaatcggct cgactatcaa
     2761 aacagaccgt gagattgagc tggatggcgt aacgtatccg tacgtgacaa ttgatgtctc
     2821 ttctaaatcg cacccgttct atacagggaa gctgagaaca gtggcatcag aaggaaatgt
     2881 tgcacgattc acccaacgtt ttggtcgttt tgttagcacg aaaaaggggt cgtgatgaaa
     2941 gttcttaact ctctgcgtac cgcaaaagaa cgccatccag actgtcagat tgtgaagcga
     3001 aaaggacggc tatatgtgat ttgtaaatct aatccacgtt ttaaggccgt tcaggggcgt
     3061 aagaaaaaac gttgattcaa aattcgacgg attaacgata tttgtctgat taataatcag
     3121 atcggattaa tgttggtgtg tttataacac caacattaat tttcctgggg atatattctt
     3181 cctgttcatt tgaggccaac tgcctgacgt ttctctacga atattccatt atcttaatgt
     3241 tgacttgttg accagcttcg cccctgtatg ctggcatcaa ctctctttta gactgaacac
     3301 gccactcagt ctcctccctt tgcggcgcag cctgcatttt cactcaaact gttaagatga
     3361 taaatgtggt aaatctgttg gtactaacat aaaaacgttt acgccacagg aacagtctga
     3421 tccaccggta accccgtcgc cgacgttcga gtgccagtta gagtaacgcg cacagataac
     3481 tgcactcagt gccctgacaa agaggccatc gttcctgtga cagctggcag ccttcgttta
     3541 acttcactta atctggctct tgagggctta ccgaacagat gacgtacata cgcccgttca
     3601 attttccatc acttattgta atgaacacct ataaccattt tgtgcggcat gttaatccat
     3661 taaaatttct tactgattgg caaatcatct tcaatgacag ctcattatag ttttatattc
     3721 tatcccttac ccttaaaact tgttttttta ctagtccatc acacagcgca ttaagactat
     3781 tcctaacact tcagggcaaa gttcctgacc aatataaaat gcaagtaaga attgaacgtt
     3841 atattgccaa taaccttatg aaaccaaatg tctttttctt cttatcaaaa aagcaatatt
     3901 ttcagttttt ctaaatattg acttaaccat tgaattcctt ttccgttcac atattgacac
     3961 tcatcgaaaa aaaaacataa atttaagccc aatcgaaaat aattaaactt aatctcgttt
     4021 aacctttatt gatatgtact acgtatctta tttacttccg gtttactaag gaaactgaat
     4081 gcacctgtaa aaattacagg tttggaaagt agtgacatgg caaagtgatt acagtaggga
     4141 ctatgaggtt aaaaaccata tggaatgtca aaaccgttct gataaataca tctggtctcc
     4201 ccatgacgcc tacttctata aaggactatc tgaactgatt gtggatatcg acagattaat
     4261 ttatctgtcg ttggagaaaa ttagaaaaga tttcgtgttt atcaatctca atacggattc
     4321 tttatctgaa tttataaacc gtgataatga atggttatcc gcggtaaagg ggaaacaggt
     4381 cgtattgatt gcggccagaa agtcagaagc cttagctaat tattggtact acaacagcaa
     4441 tattaggggc gtggtatacg ctggactgag tcgtgatatt agaaaagaac tggcctatgt
     4501 gattaatggc aggttcctga gaaaagatat taagaaagat aaaatcacgg accgggaaat
     4561 ggaaattatc cgcatgacgg cccagggaat gcaacctaaa tcgattgcca gaattgaaaa
     4621 ttgtagtgtg aagacagtgt atacccatcg gcgtaatgct gaggccaagc tgtactcaaa
     4681 aatatataag ttggttcagt aaactccagg caagttagtt ttaaaaaatg actcactggg
     4741 acatcacgtc ctcaattcaa ctcgggaaga aatgcaatga aaaaaaggtt ctggcaatag
     4801 ctctggtaac ggtgtttacc ggcatgggtg tggcgcaggc tgctgacgta acagctcagg
     4861 ctgtagcgac ctggtcggca acagccaaaa aagacaccac cagtaatctg gttgtgacgt
     4921 cactcggtag cttggcgttc cagtatgccg aaggcattaa aggttttaac tcacagaaag
     4981 gtctatttga cgtggctatc gagggtgact caacggctac cgcctttaaa ctgacctcac
     5041 gtcttatcac caacacatta actcagttgg atacctcagg ttccacactg aatgtgggcg
     5101 tggattataa cggcgcggca gtcgaaaaaa ctggcgatac cgtgatgatc gataccgcca
     5161 acggcgtact gggcggcaac cttagcccgc tggctaacgg ttacaatgcc agcaatcgta
     5221 ccaccgcaca ggatggtttc accttcacca tcatcagcgg caccaccaat ggtaccaccg
     5281 cagtaaccga ttacagcact ctaccggaag gcatctggag cggcgacgtt agcgtacagt
     5341 tcgacgcgac ctggaccagt taatctctct gatgtaccag caggggtagc ccccctgctt
     5401 tattcctgga cggaattgtt atgaaaaagc accttctgcc tctcgctctg ctgttttccg
     5461 gaatatctcc ggcccaggcg ctggatgtcg gcgatatatc atcgtttatg aacagtgaca
     5521 gcagcacgct gagcaaaacg atcaaaaaca gtaccgacag tggtcgcctt atcaatatcc
     5581 gtctcgaacg gctctcttca ccgcttgacg acgggcaggt tatctcaatg gacaagccgg
     5641 atgagttgct actcactccc gccagcttgc tgctacccgc ccaagccagc gaagtgatcc
     5701 gcttcttcta taagggaccc gcagatgaaa aagagcgcta ctaccgcatt gtctggtttg
     5761 atcaggccct cagtgatgcg cagcgcgata atgccaaccg cagcgctgtg gccactgctt
     5821 ccgcccgcat cggcaccatt ctggtcgtcg cccctcgtca ggcgaactac cactttcagt
     5881 acgccaacgg ctccctgaca aatacaggaa atgcgacgct gcggatcctc gcctacggcc
     5941 cctgcctgaa agccgccaac ggtaaggagt gtaaagagaa ttactacctg atgccgggca
     6001 agtcgcgtcg ttttacccgc gtggacactg cggataacaa aggacgggtt gcactttggc
     6061 agggtgataa gttcattccc gtgaaataga tagctgtgca gatggataac gacaatgcct
     6121 ttacgacggt tctccccagg actgaaagcc cagtttgcct tcggcatggt ctttttgttc
     6181 gttcagcccg atgccagcgc tgctgacata agtgcgcagc aaataggtgg ggtgattatt
     6241 ccgcaggcct tcagtcaggc gcttcaggac ggcatgagcg tcccgctcta tattcatctc
     6301 gccggtagtc agggtcgcca ggacgatcag cgaatcggca gcgcttttat ctggctggat
     6361 gatggacagc tacgcatccg gaaaatacag ctggaagaga gtgaagataa cgccagtgtc
     6421 agcgaacaaa ctcgacagca gctgatggct ctggcgaacg ccccgttcaa tgaggccctt
     6481 accatcccct gactgacaac gcgcagttgg atctcagctt gcgccaactg ctgctgcagc
     6541 tggtggtcaa gcgcgaagcg ctgggcaccg tactacgctc acgtagcgaa gacatcgggc
     6601 agtccagtgt taacaccctc agcagtaatc tgagctataa cttgggcgtc tataacaacc
     6661 agttgcgtaa cggcgggagc aacacatcca gctatctgtc gctgaataac gttactgcgc
     6721 tgcgcgaaca tcatgtggtg ctcgacggct cgctgtacgg gatcggtagc ggtcaacagg
     6781 acagtgaatt atataaagcg atgtatgaac gcgattttgc cggtcaccga tttgccggtg
     6841 gaatgctcga cacctggaac ttgcagtcat tagggccgat gaccgccatt tcagcaggga
     6901 agatttacgg cctttcctgg ggaaaccagg ccagctccac catcttcgac agcagccagt
     6961 cagccacgcc agtgatcgcc tttttaccgg cggcgggcga agtacatctc acccgtgatg
     7021 ggcggctact aagcgttcag aacttcacta tgggcaatca tgaagtggat acccggggtc
     7081 taccgtacgg tatttacgat gtggaagttg aggtgatcgt taacggtcgc gtgatcagca
     7141 aacgcactca acgggtcaat aagctgttta gccggggcgc ggcgtcggtg caccactggc
     7201 gtggcaggta tggggcggta gctttcatat ggatcgctgg tcggaaaacg ggaaaaagac
     7261 gcgaccagct aaagagagtt ggctagcagg tgcctcgacc tccggctcat tgagtacgct
     7321 tagctgggcg gcaacgggat atggatacga taatcaggcg gtgggtgaaa cccgtctgac
     7381 gctgccgctt gggggggcga tcaacgttaa cctgcaaaat atgctggcca gtgacagctc
     7441 atggagcagc atcggcagca tcagcgctac tctaccggga ggctttagtt cgctgtgggt
     7501 taaccaggaa aaaacccgta ttggcaatca attgcgacgt agcgatgccg acaaccgtgc
     7561 aatcggcggc acactcaacc tgaactcact gtggtcgaag ctgggcacat tcagcatcag
     7621 ctacaatgat gaccgccgtt acaacagcca ttattacacg gcagattact atcaaaatgt
     7681 ctacagcggt acctttggtt cgcttggcct gcgggccggt attcagcgct ataacaacgg
     7741 cgacagcaac gccaatacag ggaaatatat cgctctcgat ctctcgctac cactgggcaa
     7801 ctggtttagc gcagggatga cccatcaaaa cggctacacc atggcaaacc tgtcagcacg
     7861 caaacagttt gatgaaggga ccattcgcac tgttggtgcc aatctgtcac gtgccatctc
     7921 cggcgatacc ggtgatgaca aaaccctcag cggtggggcg tatgcacagt tcgacgctcg
     7981 ttacgccagc ggaacgctga acgtcaatag cgcggcggac ggctacgtca ataccaactt
     8041 gaccgccaat ggcagcgtcg gctggcaggg taaaaacatt gctgccagcg ggcggactga
     8101 tggcaacgct ggggtgatat tcaacaccgg gctggaggac gacggtcaga tcagcgccaa
     8161 aatcaacggg cggattttcc cgcttaacgg caagcgtaac tatctcccgc tctctcccta
     8221 tggaagatat gaggtggagt tacagaacag caaaaactca ctcgacagtt acgatatcgt
     8281 cagcggccgc aaaagtcgtc tgactctcta tccaggcaat gtcgctgtca ttgagccaga
     8341 ggtgaagcag atggttaccg tctccggtcg tatccgtgcg gaagacggca cactgctggc
     8401 taacgcacgg attaacaacc atatcggccg aacccgaacc gatgaaaacg gcgagtttgt
     8461 catggacgtg gataagaaat accccactat cgattttcgc tacagtggca ataaaacctg
     8521 cgaagtggct ctggaactca accaggcgcg cggtgccgtc tgggtcggtg atgtggtctg
     8581 cagcggcctc tcatcgtggg cggcggtgac gcagacagga gaagagaatg agagttaacc
     8641 tactaataac gatgataatt ttcgcgctaa tctggccagt aactgcgctc agagcggcag
     8701 tgagcaaaac aacctgggcg gatgcaccgg cacgcgagtt tgtgtttgtc gaaaacaact
     8761 cagacgacaa ctttttcgtc actcctggcg gggcgctgga tccgcgcctg accggtgcca
     8821 accgctggac cggtttaaaa tacactggtt caggaaccat ctatcagcaa agcctcggct
     8881 acattgataa cggttacaac accggccttt ataccaactg gaagtttgat atgtggctgg
     8941 aaaattcgcc ggtttcatct cctttaactg gcttacgctg catcaactgg tacgcagggt
     9001 gtaatatgac caccagtctt atcctgccgc aaaccaccga cgccagtgga ttttatggcg
     9061 cgacggtgac cagcggcggc gcgaagtgga tgcacggcat gttgtcagac gcgttttacc
     9121 agtatatgca acaaatgccc gtcggcagca gctttacaat gaccatcaat gcctgtcaga
     9181 cctctgtgaa ctatgacgcc agcagcggcg cgcgttgtaa ggatcaggcc tccggcaact
     9241 ggtatgttcg caatgtcacc catacgaaag cagcaaatct tcggttaata aatacccact
     9301 cgctggcgga ggtatttatc aacagcgacg gggtgccgac cctgggcgaa gggaacgccg
     9361 actgccggac acagaccatc ggcagccttt caggattaag ttgtaagatg gtcaactata
     9421 ccctgcaaac aaacggactc agcaacacct caatccatat attcccggcg atcgccaact
     9481 cgtcgttagc ctcggccgtc ggggcgtacg atatgcagtt cagtctgaat ggcagttcat
     9541 ggaaaccggt gagcaatacc gcctattact acaccttcaa cgagatgaag agcgcagact
     9601 cgatctatgt tttcttctcg agcaacttct ttaagcagat ggtgaacctc g
//
LOCUS       DAJVUY010000161         9492 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.161, whole genome shotgun sequence.
ACCESSION   DAJVUY010000161 DAJVUY010000000
VERSION     DAJVUY010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9492
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.161"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..191
                     /locus_tag="OQQ72_003479"
     CDS             <1..191
                     /locus_tag="OQQ72_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013083.1"
                     /translation="AHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHLETALRFNP
                     LATLPSGDKVAAAVGITP"
     gene            complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ72_003480"
     CDS             complement(296..832)
                     /gene="rcdA"
                     /locus_tag="OQQ72_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RcdA"
                     /protein_id="HCS2013084.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            916..2124
                     /locus_tag="OQQ72_003481"
     CDS             916..2124
                     /locus_tag="OQQ72_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013085.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ72_003482"
     CDS             2124..2939
                     /gene="ybjI"
                     /locus_tag="OQQ72_003482"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HCS2013086.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            3025..3309
                     /locus_tag="OQQ72_003483"
     CDS             3025..3309
                     /locus_tag="OQQ72_003483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013087.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ72_003484"
                     /pseudo
     CDS             complement(3350..4580)
                     /gene="mdfA"
                     /locus_tag="OQQ72_003484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ72_003485"
     CDS             4865..5461
                     /gene="ybjG"
                     /locus_tag="OQQ72_003485"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS2013088.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ72_003486"
     CDS             5519..6277
                     /gene="deoR"
                     /locus_tag="OQQ72_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HCS2013089.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ72_003487"
                     /pseudo
     CDS             complement(6324..7515)
                     /gene="dacC"
                     /locus_tag="OQQ72_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
     gene            7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ72_003488"
                     /pseudo
     CDS             7762..8387
                     /gene="gstB"
                     /locus_tag="OQQ72_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308945.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase GstB"
     gene            complement(8384..>9492)
                     /gene="yliI"
                     /locus_tag="OQQ72_003489"
     CDS             complement(8384..>9492)
                     /gene="yliI"
                     /locus_tag="OQQ72_003489"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldose sugar dehydrogenase YliI"
                     /protein_id="HCS2013090.1"
                     /translation="QSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLPDNH
                     GMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS
                     EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA
                     LGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAM
                     NPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQ
                     PVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD
                     RGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN"
BASE COUNT         2293 a         2455 c         2342 g         2402 t
ORIGIN      
        1 cggcgcactt catgatgtcg ggtggaaaca ttctggcctt acaaaaaatt ctcggacacc
       61 acgatataaa aatgactatg cgttacgcac atctggcacc ggatcatctg gaaacggcgc
      121 tccgtttcaa tcctctggca acgctgccaa gtggcgacaa agtggcggca gcggttggca
      181 ttaccccgta ataaccacca ctgaccacca acctaactta ttgtttttaa tctaacttat
      241 tgttttcatt aacccgttta cataaatggg ttttttgtta tctaaaattt atctactacc
      301 ctgcaaccct ctcaaccatc ctcaaaatct cctcgcgcga tagcggctta cggtcggtga
      361 caaaatgcag cgtcatcccc tcaataaacg catcaagcgc gcgggcggtt ccgggttcaa
      421 accattgttc gagcgtttgc tgactgcgct gcatccagtt ttgcattacc gtttttaata
      481 gcggttttcg gctagccagc gcgtagagct ggtacatcag ctccatatta tccggcgttg
      541 caacctgtga gctgtagatc atatcggtga tagcctggca tgcgccttga gcatcactaa
      601 catcgctaaa aaatgcctga tattgccggg acataatctc agtaaaactg ctgaacgcct
      661 ccagcaacaa ctcatcaatt cctgaaaaat agtaggtcat cgatcccaac ggtaccccgg
      721 caagggtagc aattttgcgg tgcgtaacag catgtattcc gtaaagtttc accgcctcca
      781 gcgtggcctg gataattttt tctcgccgtt gcggatcgtt agcgcgacgc atgtcatttc
      841 ctctgtctgc aattgtgtac aaatgtacac aaccttgcta atgttgtctt ccctcttctt
      901 attttgacgt gatctatgac cgtaaattct tcacgtaatg cattgaaacg ccgaacctgg
      961 gcgctgttta tgttcttctt tttgccaggc ctgttaatgg cgtcctgggc aacccgtacg
     1021 cctgctatcc gcgatattct ctctgtctcg atcgctgaaa tgggcggtgt tctctttggt
     1081 ctgtcgatcg gttcgatgag cggtattctc tgctcggcgt ggttagtgaa acgctttggg
     1141 acacgtaatg tcatcctggt cacgatgtcc tgcgcattga tcgggatgat gatattaagt
     1201 ctggcactct ggctgacatc gcccctgctc tttgccgttg gtctcggcgt ctttggggca
     1261 agttttggtt ctgcggaagt ggcgataaac gttgaaggtg ccgccgttga gcgagaaatg
     1321 aataaaacgg ttttgccgat gatgcacggt ttttatagcc tgggcacgct ggcaggcgct
     1381 ggtgtcggga tggcactgac ggcctttggc gttccggcaa cggtgcacat tttattggcg
     1441 gcgctggtag gtatcgcgcc tatttatatc gccattcagg caatccctga cggtacgggc
     1501 aaaaatgctg ccgatggcac ccagcatggc gaaaaaggca ttccttttta tcgcgatatc
     1561 cagttgctgt tgattggtgt tgtagtgctg gcgatggcct ttgccgaagg ttctgccaac
     1621 gactggttac ccttattaat ggttgacggt cacggtttta gccctacttc cggctcgctg
     1681 atttatgccg gttttaccct ggggatgacc gttggacgct tcactggcgg ttggttcatc
     1741 gaccgttaca gtcgcgttgc cgtggttcgg gccagtgcac taatgggggc gttgggtatt
     1801 gggctgatta tttttgtcga tagcgcctgg gtcgctgggg tgtctgttgt actctgggga
     1861 ctgggtgcct cgctgggctt cccgctgacc atttctgccg ccagcgatac cggccccgat
     1921 gcaccaaccc gcgtcagtgt ggtagcaacg accggttatc tggctttcct cgtcgggccg
     1981 ccgctgctgg gctatctcgg cgaacattat ggattacgta gtgcaatgct ggttgtactg
     2041 gcgctggtta ttctcgcggc tattgtcgcg aaagccgtcg ccaaacccga taccaaaacg
     2101 cagacggcga tggagaatag ttgatgagca ttaaattaat tgcggtagac atggatggta
     2161 ctttcttaag cgatcaaaaa acctataacc gtgagcggtt tatggctcag tatcagcaaa
     2221 tgaaagcaca aggcattcgc tttgtggtcg ccagcgggaa tcaatattat cagttgatct
     2281 ctttcttccc tgaaattgct aatgaaattg cctttgtggc tgaaaacggc ggctgggtag
     2341 tgagtgaagg caaagatgtt tttaatggcg agctgtcgaa ggatgccttt actactgtcg
     2401 tggaacattt gctgacgcgc ccggaagtgg aaattattgc ctgcggaaaa aatagcgcct
     2461 atacgctcaa aaaatatgac gatgccatga aaacggtggc ggaaatgtat tatcaccgtc
     2521 tggaatacgt tgataacttt gacaacttag aagatatttt ctttaagttt ggcctgaatc
     2581 tttccgatga actgattcca caagtacaaa aagcattaca tgaggccatc ggcgatatta
     2641 tggtgccagt ccacaccggc aacggcagca tcgatctgat tatccccggc gtacataaag
     2701 ccaatggcct tcgccaactg cagaaattat ggggaataga cgacagcgaa gtggtggtct
     2761 ttggcgatgg cggtaacgat attgagatgc tgcgtcaggc aggctttagt tttgcaatgg
     2821 aaaatgccgg cagcgcggtc gtcgcagcgg caaaataccg ggcaggctcc aataaccgtg
     2881 aaggcgtact ggatgtgatc gataaagtgc ttaaacacga agcgccattt gaccaataaa
     2941 aacggcagca cgcccggcaa cacaatacct gaatgaaggc tgcataattc gcggaaatta
     3001 acccgctgca ttatttcagg cgaaatgatt atgaaaaatt gtctactgtt gggcgcgctt
     3061 ttaatgggct ttactggtgt ggcgatggcg caaagtgtca ccgtcgatgt gccgagtgga
     3121 tacaaagtgg ttgtagttcc tgattcagtc agcgttccac aagcggtcag cgtcgcgact
     3181 gtgccgcaaa ccgtctatgt ggctcctgcg ccagctccgg cttaccgccc gcatccttat
     3241 gctcgccatc ttgccagcgt aggtgaaggg atggttatcg aacaccagat tgacgaccat
     3301 caccattaat tcgagaatgc ctgatcgcac aaagcagtca ggcatttttt tacccttcgt
     3361 gagaatttcc catctgttta tcttttaaaa agataaccat cagcgacagc cacaaaattc
     3421 cgttgacaag gttgaagaga ttaaactgtc cgttgccccc gttcagccag gcatgtttgc
     3481 tgatttcaat accaacggta aagatcagca tttgcagcat tcccatcgcc gcagaaaccg
     3541 tacctttact catatcgctg gcaaacaggg ttaatcgcac cagtcccgca ttcgccagac
     3601 caataccgaa agcataaata cttaacccgg cagtcatcca taaatacgcg tgcgatgaga
     3661 taaccgttgc cgcagcagcg accaacagac caatcataat cggccagccg cccataatta
     3721 tcagcgaacg tacggtgcgg cgcgaggtca gacgcgctaa cagcaagtta cccgcaatta
     3781 acgccccgaa aataggcact tgcagcaagc catattcata gctgctcaac tgctcgccgg
     3841 taatgatgat aatcggcgac tgggcgatcc acgccagcaa tggcaggcta acgaatccca
     3901 gcgccagcgc ccccgccaca aagcggccgt tcttcagcac cagcttatag tcacgaccga
     3961 gttctttcag tgacagtttc tcgcctatac gcgtggcggt ttcaggcata gctcgttgca
     4021 gaccgaaaaa ggagatcgct gccaatgcgg caaacaaaac aaacatcccc tcccagggca
     4081 gcacatggat ccacgccgcg cccaccagcg gaccaagtag cggagcaatc agcgccacgt
     4141 tcgccatcag cgcggtgatc ttgatacaaa ccgcctcttc gaaagattcc tgaattgcgg
     4201 cgtatcccac agcgccaatg aaacagaggc ttatgccctg caagaagcgc aacagagtga
     4261 attgttcaat gttttgcgcc agtaatattg ccagacaggt gatgataaac cacaccaccc
     4321 ccgccagcat caccggacgg cgaccaatac gatccgacag cggccccagg agccattgta
     4381 aaaacatccc gcccgccaga tatgcggtca ttgaagtagg aacccaatca atgcccgcct
     4441 gatattgttc caccacggcc aacataccgg gttgaatcat atctgccgat ataggttgaa
     4501 aattcgtaaa gcaccagaca gagagggaaa agtaacgcct gacgtccaag cctggcaccg
     4561 gaagctaatt tattttgcat gcaatttctt cgccaataat aatcgcgcag agtttaataa
     4621 aagcgcagct aacgagaaag cgaattttgt agctgaaacc acggttaagc acattcttac
     4681 attattgcga gtatagctac gctttcttta agttttattt aacctatgcc cgttacaatc
     4741 acccaccgta aacaggccgc ttgagggaaa taagacgatg ccgctttacc cagtttaacc
     4801 tgcactttat tctcaacgac ttgcctgtat tggctccctt ttaatcactt tgcgtcggga
     4861 agttatgctg gaaaatttga atctctctct attctctctt attaacgcga cgccagactc
     4921 ggctccgtgg atgatctcgt tggcgatttt tattgctaaa gatttgatta ccgtggtgcc
     4981 gctgctggcc gcggtgcttt ggttgtgggg gcttacagca caacggcaac tggtgataaa
     5041 aatcgctatc gcgctggcgg tcagcctgtt tgtgtcctgg acgatgggac atctttttcc
     5101 gcacgaccga ccctttgtcg aaaatatcgg ctataacttc ctgcatcatg cggcggatga
     5161 ctcattccca agcgaccacg gtacggtgat tttcaccttt gcactggcat ttttatgctg
     5221 gcatcgcctg tggtccggct cacttttaat ggtgctggcc gtcgtcattg cctggtcgcg
     5281 cgtttatctt ggcgtccact ggccgctgga tatgctcggt ggattgctgg caggtatgat
     5341 tggctgcctt agtgcccaga ttatctggca agcgatgggg cataaactct atcaacgtct
     5401 gcaatcgtgg tatcgcttct gttttgcatt accgatccgc aaaggctggg tgcgtgactg
     5461 atctctgcta aaaagtgtag tattgagcgg ctcgcttcaa taactattca gagggattat
     5521 ggaaacacgt cgcgaagagc gtatcgggca gctgctgcaa gaattaaaac gcagcgataa
     5581 gttacatctt aaagacgccg ccgccctgct tggggtttcg gagatgacga ttcgtcgcga
     5641 tctgaacaac cacagtgcgc ccgtcgtttt gctcggcggc tatattgttc tggaaccgca
     5701 tagtgccagc cattacctgt taagcgatca aaaatcccgc ctggtggaag aaaaacgccg
     5761 ggcggcaaaa ctggctgcga cactggtaga acccgatcag accctctttt ttgactgtgg
     5821 caccaccacg ccgtggatta ttgaagcgat tgataatgaa atccctttta ccgccgtttg
     5881 ttattcgcta aatacctttc tggcgctgaa agagaaaccc cattgccgcg catttctgtg
     5941 cggtggtgaa tttcacgcca gcaacgccat tttcaaaccc atcgattttc agcaaacgtt
     6001 gaataatttt tgcccggata tcgcttttta ttccgcggcg ggcgtgcatg tcagtaaagg
     6061 cgctacctgt tttaatcttg aagagttgcc ggtaaaacac tgggccatgt cgatggcgca
     6121 aaagcatgtg ctggttgtcg accacagtaa atttggcaag gtccgtccgg cgcgcatggg
     6181 tgacctgaaa cgctttgata ttgtggtgag tgattgttgc ccggaagatg agtatgtgaa
     6241 gtacgcgcag acgcaccgta ttaagttgat gtattaatga cgtataaccg gatgacgttt
     6301 cgcgccatcc ggttatcaga agattaagag aaccagctgc cgaaccactg atggaatttc
     6361 atcatcacga aatcccacat cctaccaaag aatccgccct cttccacatt ttccatcacg
     6421 atcagcggac gctgctcaat ggatttaccg ttaagctgga aatcaatggt cccgacaacc
     6481 tgaccttttt tcagcggtgc ggtaagctgc ggttccgtta acgtgtagct cgccttcagg
     6541 tttttcagct gcccacgcgg tatggtcact gagcccgctt cgcctgcccc gagattcact
     6601 tcgctcttat caccaaacca gacgcgctga gtcacaaagg tggcatcagg tttaattggc
     6661 gtcacggttt caaagaagcg gaaaccccag gtcaataatt tctcagactc atcggtcagt
     6721 tttcgccccc aacactacgg agattaaacg catatcgccc tgggtagccg aagcaaccag
     6781 attatatccc gcgcctgccg tggttcctgt cttcatgcca tcaacattca gattgctgct
     6841 ccacagcaga cggttacggt taggctgacg aattttgttg aaggtgaact ctttctcttt
     6901 atgaatggcg tactcttccg gcacatcgtg gatcaatgct ttacccagca atgccatatc
     6961 gcgcgcggta ctgaactgcc ccggcgcatc caggccgtgc accgtctgga aggtagtgtt
     7021 ggtcagaccc agttttttgg cataaccatt catcagacca ataaatgact cctggctccc
     7081 ggcaacgtaa tcggccagcg caatacaggc gtcattaccg gactggataa tcacatcttt
     7141 gttcaagtct gccaccgaaa cctgatcgcc cggtttgagg aacattaccg atgaaccacg
     7201 cagtgccgga tttcccgtcg cccaggcatc tttaccgacc gtcaccatat cggtgagttt
     7261 aatcttatcg gccttaagcg cctgcccaac cacatagctg gtcatgattt tagtcaggct
     7321 cgcgggatcc agtttctcat ccgcattgcc ttctgccagc actttaccgc tggcgtaatc
     7381 cattaaaatc catgcacgcg catccacgct cggcgcttca acggtttgtt cggccgcgaa
     7441 tgccgttggg gcaaaaagga ataaaaatgc agaacccgct gcaagaccac gaaggagaga
     7501 ggagtattgc gtcataaatg ccacccgagt atccattcaa aaaaaatacg ttatatcgcc
     7561 gtatgataag ttcggtgatt aataacgcac acacaaactt aaagaaaccg taagttggta
     7621 aagtttttaa agtttatgca atatcctgcc gcttcgctgc ttctggtgtc atttttttgc
     7681 cagctgttgc ttaaaagtta actttacttc accatcggag tcctgttcag cctgtggctg
     7741 cctgtcggaa aaggggtgag tatgattacg ctgtggggtc ggaataattc aaccaacgta
     7801 aaaaagtatt gctgacgctc gaagaactgg aactacctta tgagcaaatt ctcgcgggcc
     7861 gtgagtttgg gataaatcac gatgctgatt ttctggcgat gaaccctaac gggctggtgc
     7921 cgttgttgcg tgacgacgaa agtgatctca ttctttggga atcaaacgcc attgtccgct
     7981 atctggcggc acagtacggg caaaaacgcc tgtggatcga ctcaccggca cgtcgtgcgg
     8041 aagcggaaaa atggatggac tgggcaaacc agacgctcag taatgcccat cgagggatcc
     8101 tgatgggatt agtcagaaca ccaccggaag agcgcgatca ggccgccatt gatgccagtt
     8161 gcaaagagtg cgacgccctg tttgccctgc tcgatgcgga actggcaaaa gtaaaatggt
     8221 tctctggcga cgagtttggt gtgggcgata tcgctatcgc accgttcatc tacaatttgt
     8281 ttaacgttgg cctgacctgg acaccgcgtc caaatctgca acgctggtat cagcaactca
     8341 ctgaacgccc cgcagtgcgc aaagtggtga tgattcccgt tagctaattg cgtgggctaa
     8401 ctttaagtaa ttccccactg gactcgtcgg tgagaacgta taaataaccg tcgggtccag
     8461 tgcgaacatc acgaattcgc tgccctctgt ccgttaaaat acggccatct tctgtcactt
     8521 tgtcgccgtt gacgctcatc acaatgacat ctttatcttt cagcgcgcca ataaataatt
     8581 tttgctgcca ctgggggaat ttatcgctgt tatagaaggc catgccgctc acagcgggcg
     8641 aatctttcca gtaaaaaaca ggttgctcgg tcccggcgac gatctcccct ttcgcttccg
     8701 gtatcttaaa gcctgaatag ttgattcccc aggttgccag cggccagccg tagtttttgc
     8761 ctttttgcgg gatattaatt tcatcaccac cgcgcgggcc atgttcattc agccacagtg
     8821 cattactcca cggattcatc gccattcctt gcggattacg aatgccataa gaccagatct
     8881 cggcgcgcgc accggattcc tttataaaag gattatcatc cgggatttcg ccctgatcgg
     8941 tcagacgcac cagtttgccc tgtaatttat ccagatcctg cgccgtcggg cgctgattgt
     9001 tttcgcccag agcaataaaa agataacctt taccgtcgaa taccagccgc ccgccaaaat
     9061 ggttgccggt agacagtttt ggcatctggc ggaagacggt gcggaagtcg gtcacttttg
     9121 agagatcatc acttaagcgg ccataaccca cagcagttcc ggctttgcca tcatcgccaa
     9181 cttcggaata acttaaccag atgcggcgag actgagcaaa atcaggcgct aaaaccacgt
     9241 ccagcaggcc gccctgcccg tgcgcccaaa cgtccggaac tccggaaagc ggcgcagata
     9301 atccttttcc tgcttgccag tgacgcaact cgccgccgcg cagagtgatt aacataccgt
     9361 gattatcggg taaaaaggcc agtgcccagg gatggtcgag tttgtcttgc agtacttcga
     9421 catttaccgt tgcaggagcc gcccagagag cggaagaaag acaaataagg ggcacaagga
     9481 aaaaggattg tc
//
LOCUS       DAJVUY010000162         9485 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.162, whole genome shotgun sequence.
ACCESSION   DAJVUY010000162 DAJVUY010000000
VERSION     DAJVUY010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9485
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.162"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..1440)
                     /gene="pepD"
                     /locus_tag="OQQ72_003490"
     CDS             complement(<1..1440)
                     /gene="pepD"
                     /locus_tag="OQQ72_003490"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS2013091.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLK"
     gene            1701..2159
                     /gene="gpt"
                     /locus_tag="OQQ72_003491"
     CDS             1701..2159
                     /gene="gpt"
                     /locus_tag="OQQ72_003491"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS2013092.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            2251..3495
                     /gene="frsA"
                     /locus_tag="OQQ72_003492"
     CDS             2251..3495
                     /gene="frsA"
                     /locus_tag="OQQ72_003492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS2013093.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            3553..3954
                     /gene="crl"
                     /locus_tag="OQQ72_003493"
     CDS             3553..3954
                     /gene="crl"
                     /locus_tag="OQQ72_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS2013094.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(3993..5048)
                     /gene="phoE"
                     /locus_tag="OQQ72_003494"
     CDS             complement(3993..5048)
                     /gene="phoE"
                     /locus_tag="OQQ72_003494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS2013095.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            5336..6439
                     /gene="proB"
                     /locus_tag="OQQ72_003495"
     CDS             5336..6439
                     /gene="proB"
                     /locus_tag="OQQ72_003495"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS2013096.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            6451..7704
                     /gene="proA"
                     /locus_tag="OQQ72_003496"
     CDS             6451..7704
                     /gene="proA"
                     /locus_tag="OQQ72_003496"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS2013097.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            7819..7894
                     /locus_tag="OQQ72_003497"
     tRNA            7819..7894
                     /locus_tag="OQQ72_003497"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7852..7854,aa:Thr,seq:cgt)
     gene            complement(8949..9383)
                     /locus_tag="OQQ72_003498"
     CDS             complement(8949..9383)
                     /locus_tag="OQQ72_003498"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013098.1"
                     /translation="MGYDSRLDRLATTSWHSFFNNITARGEIMEPYSLTLDEACHFLK
                     ISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEE
                     RKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS"
     gene            complement(9299..>9485)
                     /locus_tag="OQQ72_003499"
     CDS             complement(9299..>9485)
                     /locus_tag="OQQ72_003499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013099.1"
                     /translation="EPDERESYELFMEKHFGGLVDSRRAKNGDNEYMAWDMTLGWIVW
                     QQRAGIHFSTISQQEVK"
BASE COUNT         2242 a         2353 c         2399 g         2491 t
ORIGIN      
        1 tttcagcagt tcagtcagca gtgtccagta atgacctacg ctttcgatgt gaacttgctc
       61 atccggagag tgtggaccgg tgatagttgg cccgatagaa accatgtcca tttccggata
      121 cggttttttg aacagaccac attccaggcc cgcgtggata atctggatgt tcggcgtctt
      181 gttgaacagg cgctgatagg tttcacgtac cagatgcatc accggagaat tagcgtccgg
      241 ctgccagcca ggatatgcgc ctttcgcttc ggttttcgcg ccagccagtt tacccagcga
      301 atccagcatg ctcaccacgt agtctttacc gctgtcgatc agtgaacgga tcaggcagtg
      361 aatttctacg ttattgtcag tcatggtcac cacaccgacg ttcagggagg tttcaaccac
      421 acctttggct acatcggagt tgcggatcac accgttcggg gtggcgttca gcagacgaat
      481 aaaggtatcg cgagatttcg caatcagggc agctttatcg ttcgctacag agtccagcaa
      541 caaggccaga tttttctctt tctctgccag ctcgtttttc aggatctcct gataggtatt
      601 caccagagat ttcagtgcgt cgactttatc agctgcgaca gcaatggtcg caaaggcttc
      661 acgcgggatg gcgttacgca gtgtgccgcc gttgaaatcg ataaggcgca ggtccagttc
      721 ttctgcatga cccgccagga agcgcaccag cagtttgttg gcattaccca ggccaacgtg
      781 gatttcaccg ccggagtgac cgcctttcag accttttaag gttaacttga aggtttcaaa
      841 accagctgga accgcttcac gatctaaatg caggttggag gtgaagtcga taccccccgc
      901 acaacccatg tagatttcac cttcttcttc ggagtcggtg ttaatcagaa tatcagcctg
      961 caaccagttg ctctgtaagc caaaagcacc gtccataccg gcttcttcgg tcatggtcag
     1021 cagcacttcc agcggaccgt gaaccacgtt ttcgtcagcc agaaccgcca gtgcagaggc
     1081 cataccaatg ccgttatccg cacccagcgt ggtgccgcgc gctttaaccc attcgccatc
     1141 aatataaggc tggataggat ctttcgtgaa gtcatgcacg gtgtcgttat ttttctgcgg
     1201 caccatatcg aggtgggcct gtaagacgac cggtttacga ttttccatac ctgcggtagc
     1261 aggtttacga atcaggatat tacctacctg atcgcgttcg acatggaaac ctttctcttt
     1321 tgcccaacca acaatgtatt cagcgagttg ctcttcatga taggacgggt gcggaataga
     1381 acagattttg gcaaaaatat cccacagcgg ctgtggagat aattgagaca gttcagacac
     1441 gttaagtctc cttgtcgatc acccgcaaaa cagtattgca ggtcacaggg ttagcagaaa
     1501 atgttgtcaa cacaagacag gcttgcgaga tatgtttgag aataccactt tatcccgcgt
     1561 cagggagagg cagtgcgtaa aaagacgcgg actcatgtga aatactggtt tttagtgcgc
     1621 cagatctcta taatctcgcg caacctattt tcccctcgaa cactttttaa gccgtagata
     1681 aacaggctgg gacacttcac atgagcgaaa aatacatcgt cacctgggac atgttgcaga
     1741 tccatgcacg taaactcgca agccgactga tgccttctga acaatggaaa ggcattattg
     1801 ccgtaagccg tggcggtctg gtaccgggtg cgttactggc gcgtgaactg ggtattcgtc
     1861 atgtcgatac cgtttgtatt tccagctacg atcacgacaa ccagcgagag cttaaagtgc
     1921 tgaaacgcgc agaaggcgat ggcgaaggct tcatagttat tgatgacctg gtggataccg
     1981 gtggtactgc tgttgcgatt cgtgaaatgt atccaaaagc gcactttgtc accatcttcg
     2041 caaaaccggc tggtcgtccg ctggttgatg actatgttgt tgatattccg caagatacct
     2101 ggatcgaaca gccgtgggat atgggcgtcg tattcgtccc gccaatctcc ggtcgctaat
     2161 cttttcaacg cctggcactg ccgggcgttg ttctttttaa cttcaggcag gttacaatag
     2221 tttccagtaa gtattctgga ggctgcatcc atgacacagg caaacctgag cgaaaccctg
     2281 ttcaaacccc gctttaaaca tcctgaaacc tcgacgctag tccgccgctt taatcacggc
     2341 gcacaaccgc ctgtgcagtc ggctcttgat ggtaaaacca tccctcactg gtatcgcatg
     2401 attaaccgtc tgatgtggat ctggcgcggt attgacccac gtgaaatcct cgacgtccag
     2461 gcacgtattg tgatgagcga tgctgaacgt accgacgatg atttatacga tactgtgatt
     2521 ggctaccgtg gtggcaactg gatttatgag tgggccaccc aggcgatggt gtggcaacaa
     2581 aaagcctgtg cggaagaaga tccgcaactc agtggtcgac actggctgca tgcggctacg
     2641 ttgtacaaca ttgccgccta tcctcatctg aaaggagatg acctggccga gcaagcgcag
     2701 gctttatcaa accgcgccta tgaagaggcc gcccagcgtc tgccgggcac gatgcggcag
     2761 atggagttta ccgtacccgg cggtgcgccc atcaccggct ttttgcatat gccgaaaggc
     2821 gatggcccgt tcccgacagt attaatgtgt ggtggtctgg atgcgatgca gacggactat
     2881 tacagcctgt atgaacgtta ttttgcgccg cgcggcattg tgatgctgac tattgatatg
     2941 ccgtcggtgg gcttttcttc aaaatggaag ctcacccagg actccagcct gttgcatcag
     3001 cacgtcttaa aggcgctgcc taacgtaccg tgggtggatc acactcgcgt cgcggccttt
     3061 ggtttccgtt tcggcgctaa cgttgccgtg cgtctggcat atcttgaatc gccgcgtctg
     3121 aaagcggttg cctgtcttgg tccggtagtt cataccctgt tgagtgattt taagtgccag
     3181 caacaggtgc cggaaatgta tcttgacgtt ctggcgagtc gtttggggat gcatgatgct
     3241 tccgacgaag cgttacgcgt ggagctgaat cgctattcat taaaagtgca aggattgctg
     3301 ggacgtcgct gcccaacgcc aatgttatca ggctactgga agaacgatcc gttcagcccg
     3361 gaagaggact cacgcttaat cacctcatca tctgctgacg gtaaattatt agagatccca
     3421 tttaacccgg tgtatcggaa ttttgacaaa ggtcttcagg aaatcaccgg ctggatcgaa
     3481 aaacgcttgt gttaaaaatt tgctaaattt tgccaatttg gtaaaacagt tgcatcacaa
     3541 caggagatag caatgacgtt accgagtgga cacccgaaga gcagattgat caaaaaattt
     3601 accgcactag gcccgtatat tcgtgaaggt aagtgcgaag ataatcgatt ctttttcgat
     3661 tgtctggctg tatgcgtcaa cgtgaaaccg gcaccggaag tgcgtgaatt ctggggctgg
     3721 tggatggagc tggaagcgca ggaatcccgt tttacctaca gctaccagtt tggtctgttc
     3781 gataaagcag gcgactggaa gagtgttccg gtaaaagata ctgaagtggt tgaacgactg
     3841 gagcacaccc tgcgtgagtt tcacgagaag ctgcgtgaac tgctgacgac gctgaatctg
     3901 aagctggaac cggcggatga ttttcgtgac gagccggtga agttaacggc gtgagtgaaa
     3961 tgtgccggat gcatcacatc cggcaatatc tattaaaact gatacgtcat cccaatcgcg
     4021 acaatatcat cattattaat attcaatttg ttatcgctat ccagttggtt gattttataa
     4081 tcaacaaatg ctgacatatt tttgttgaaa taatacgtag caccgacgtc gatataatta
     4141 accagatctt caccaccgat gccctcaata tctttccctt tcgataagac ataacccagc
     4201 gatggacgca gaccaaagtc aaactggtat tgagcgaccg cttcaaagtt ctgtgtctta
     4261 ttggcaaagc cgccagttat tggcgtcatt ttgcgagttt cagaatagaa agttgccaga
     4321 taaatattat tggcatcgta tttcagacct gttgcccatg cttctgcacg cttgcctgtg
     4381 ccacggcttt gcaggttctg ctcgttggtg cgatctgagt tggtataggc cccactaatg
     4441 gcgaaatcgc tgccgccaaa gtcatatgtc aatgacgtgc cgaagccatc gccgttttgc
     4501 tttttaacgt cgcggttttc gtttttccct tgatattgca gggttaagtt caggccatcg
     4561 ataacgccga agaagtcggt gttccgatac gtcgccagac cgctggcgcg tttggtcata
     4621 aagttgtcgg tctgcgccga ggagtcgcca ccaaattccg gaaacatatc ggtccaggct
     4681 tccacgtcat acaacgcgcc caggttacga ccataatcga aagaacccaa atctttatat
     4741 ttcaacccgg caaaagcgag acgcgttttt tgctgtgcag tatcactctc tgctttatta
     4801 ccggcaaact ctgcttccca acgaccataa ccagtcagtt gatcgttaat ttgtgtttcg
     4861 cctttaaaac caaaacggat ataactctgg tcgccatctt tactgtcgtt atcactcata
     4921 taatgcatgg ctttaacttt gccatagaca tccagtttat taccgtcttt gttatatatt
     4981 tctgcggcct gtacggatgc agatgccaca atgcccatca ccactaatgc cagagtgctc
     5041 tttttcattt tcattcctga ttttaattaa cgcgcgaata ttcagcggga gagccccgtt
     5101 gaaaacagga aagtttttaa cctgagattg ttaaagatat attacagatt aataatattc
     5161 ttaaaatgtg gtaatttatt aaatctgtaa taaaagcgta aacaactgcc gctaggcttg
     5221 ctgatcccgc gcaacaaaac gccatgcttt gctcgcagat ggttggcaac cgacgacagt
     5281 cctgctaaaa cgttcgtttg atatcatttt tcctaaaatt gaatggcaga gaatcatgag
     5341 tgacagccag acgctggtgg taaaactcgg caccagtgtg ctaacaggcg gatcgcgccg
     5401 tctgaaccgt gcccatatcg ttgaacttgt tcgccagtgc gcgcagttac atgccgccgg
     5461 gcatcggatt gttattgtga cgtcgggcgc gatcgccgcc ggacgtgagc acttgggtta
     5521 cccggaactg ccagcgacta tcgcctcgaa acaactgctg gcagcggtag ggcagagtcg
     5581 actgattcaa ctgtgggaac agctgttttc gatttatggc attcacgtcg ggcaaatgct
     5641 gctgacccgt gctgatatgg aagaccgtga acgcttcctg aacgcccgcg acaccctgcg
     5701 tgcgttgctc gataacaata tcgttccggt aatcaatgag aacgatgctg tcgctacggc
     5761 agagattaaa gtcggcgata acgataacct ttctgcgctg gcggcgattc tggcgggtgc
     5821 cgataaactg ttgctgctga ccgatcaaaa aggtttgtat accgctgacc cgcgcagcaa
     5881 tccgcaggca gaactgatta aagatgttta cggcattgat gacgcactgc gcgcgattgc
     5941 cggtgacagc gtttcaggcc tcggaactgg cggcatgagt accaaattgc aggccgctga
     6001 cgtggcttgc cgtgcgggta tcgacaccat tattgccgcg ggcagcaagc cgggcgttat
     6061 tggtgatgtg atggaaggca tttccgtcgg tacgctgttc catgcccagg cgactccgct
     6121 tgaaaaccgt aaacgctgga ttttcggtgc gccgccggcg ggtgaaatca cggtagatga
     6181 aggggcaact gccgccattc tggaacgcgg cagctccctg ttgccgaaag gcattaaaag
     6241 cgtgactggc aatttctcgc gtggtgaagt catccgcatt tgcaacctcg aaggtcgcga
     6301 tatcgcccac ggtgtcagtc gttacaacag cgatgcatta cgccgtattg ccggacacca
     6361 ctcgcaagaa attgatgcaa tactgggata tgaatacggc ccggttgccg ttcaccgtga
     6421 tgacatgatt acccgttaag gagctggccg atgctggaac aaatgggcat tgccgcgaag
     6481 caagcctcgt ataaattagc gcaactctcc agccgcgaaa aaaatcgcgt gctggaaaaa
     6541 atcgccgatg aactggaagc acaaagcgaa atcattctca acgctaacgc ccaggatgtt
     6601 gctgacgcgc gagccaatgg ccttagcgaa gcgatgcttg accgtctggc actgacgccc
     6661 gcacggctga aaggcattgc cgacgatgta cgtcaggtgt gcaacctcgc cgatccggtg
     6721 gggcaggtaa tcgatggcgg cgtactggac agcggcctgc gtcttgagcg tcgtcgcgta
     6781 ccgctgggag ttattggcgt gatttatgaa gcgcgcccga acgtgacggt tgatgtcgct
     6841 tcgctgtgcc tgaaaaccgg taatgcggtg atcctgcgcg gtggcaaaga aacgtgtcgc
     6901 actaacgctg caacggtggc ggtgattcag gacgccctga aatcctgcgg cttaccggcg
     6961 ggtgccgtgc aggcgattga taatcctgac cgtgcgctgg tcagtgaaat gctgcgtatg
     7021 gataaataca tcgacatgct gatcccgcgt ggtggcgctg gtttgcataa actgtgccgt
     7081 gaacagtcga caatcccggt gatcacaggt ggtataggcg tatgccatat ttacgttgat
     7141 gaaagtgtag agatcgctga agcattaaaa gtgatcgtca acgcgaaaac tcagcgtccg
     7201 agcacatgta atacggttga aacgttgctg gtgaataaaa acatcgccga tagcttcctg
     7261 cccgcattaa gcaaacaaat ggcggaaagc ggcgtgacat tacacgcaga tgcagctgca
     7321 ctggcgcagt tgcaggcagg ccctgcgaag gtggttgctg ttaaagccga agagtatgac
     7381 gatgagtttc tgtcattaga tttgaacgtc aaaatcgtca gcgatcttga cgatgccatc
     7441 gcccatattc gtgaacacgg cacacaacac tccgatgcga tcctgacctg cgatatgcgc
     7501 aacgcccagc gttttgttaa cgaagtggat tcgtccgctg tttacgttaa cgcctctacg
     7561 cgttttaccg acggcggcca gtttggtctg ggtgcggaag tggcggtaag cacacaaaaa
     7621 ctccacgcgc gtggcccaat ggggctggaa gcactgacca cttacaagtg gatcggcatt
     7681 ggtgattaca ccattcgtgc gtaaataaaa ccgggtgatg caaaagtagc catttgattc
     7741 acaaggccat tgacgcatcg cccggttagt tttaaccttg tccaccgtga ttcacgttcg
     7801 tgaacatgtc ctttcagggc cgatatagct cagttggtag agcagcgcat tcgtaatgcg
     7861 aaggtcgtag gttcgactcc tattatcggc accatttaaa tcaataagtt acacatcatt
     7921 agtacgttcc ttatttcttg actgggacaa atttgggacc gatgggttca gaatcgagtc
     7981 tatttgccgt gcgtgttcgg taaggtgatt aggtgcgagg tgagcatatc gacgaaccat
     8041 ttcgatagac tcccagcctc ccatttcctg taacactgat aacgggactc cggcttgaac
     8101 cagccaactt gcccaggtgt gtctcaagtc gtgaaatctg aaatcatcaa tacctgctcg
     8161 tctcagcgcc gctttccagg ctgtgtttgc gtcataccgc atcttcctga ctgttggcgc
     8221 tttcgttccg tctggtttgg tacagctttc cttatacaca aatacccaac ggtgatgatt
     8281 cccgatttgt tttttcaata cgcgacatgc agtatcattc agcgcaacgc caattgcgcg
     8341 gtttgattta ctctcttccg ggtttatcca tgccacccgg cgctgcatgt ctatttgttg
     8401 ccattcaagg ttgatgatgt tcgagcgtct taagcctgtt gcaagtgcaa attcaacaac
     8461 agactttaat ggctccggac attcatcaat cagcctttgt gcttcatgag gctccagcca
     8521 gcggatccgt ttattctttg gttgaggcac tttaataatt ggtgccttat ccagcatttt
     8581 ccattcacgc tctgcggctc ttagcagggc ctttataaat gaaagatgcg tagccttcgt
     8641 tgcaacggac gctggttttg gcgtgtattc tggaacaggt ttcccttttt ttctgcatgc
     8701 ttctgccctg agtttccagt tttcctcatg acgccggttc gtcattttct gcattgctga
     8761 ataaattttt gattcagtaa tgtctcttag ttgcattcct gcgaaatgtt gaagccagaa
     8821 tccgatccgg cttttgtcat cgtccagtga ttttttatgt gctttctctt caagccacct
     8881 gacacacgct tcctcgaacg ttatatcagg aatttcacca agtttgctga cccgccatgc
     8941 ttcagccttt agcttgtcat ggagttctgt cgcctgcctt ttgtcctttg ttccaagaga
     9001 ctgtttaaat cttttaccgt tcggcaatgt gaaactggcg taccatattt cacctctgcg
     9061 gaagagtgac attttctttc ctctgttatg ccatcacccg cgctcacctg gacagtatgc
     9121 agcggagact gaagcgccgc aatgcaggct tgtcgtgttg tgaggtaagg agatttattc
     9181 ttagtgggat ctttgcgtgt tgcctgcaga cgccctgtgc gtatccagtt aatggcagtc
     9241 ggtctggata tcttgagaaa atgacaggcc tcatctagcg tgaggctgta tggttccatt
     9301 atttcacctc ttgctgtgat attgttgaaa aatgaatgcc agctcgttgt tgccagacga
     9361 tccaaccgag agtcatatcc catgccatgt attcgttatc gccgtttttt gctctccgac
     9421 tatctactaa gccaccgaaa tgtttttcca taaataattc ataggattcg cgttcatctg
     9481 gctct
//
LOCUS       DAJVUY010000163         9089 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.163, whole genome shotgun sequence.
ACCESSION   DAJVUY010000163 DAJVUY010000000
VERSION     DAJVUY010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.163"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            52..936
                     /locus_tag="OQQ72_003500"
     CDS             52..936
                     /locus_tag="OQQ72_003500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HCS2013100.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
     gene            complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ72_003501"
     CDS             complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="OQQ72_003501"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HCS2013101.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLRRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ72_003502"
     CDS             complement(1931..2677)
                     /gene="mipA"
                     /locus_tag="OQQ72_003502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="scaffolding protein MipA"
                     /protein_id="HCS2013102.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ72_003503"
     CDS             3113..5047
                     /gene="yeaG"
                     /locus_tag="OQQ72_003503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
                     /protein_id="HCS2013103.1"
                     /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLM
                     AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK
                     KQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI
                     LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDEN
                     NQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL
                     TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR
                     ISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES
                     LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL
                     EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT
                     YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN
                     NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG
                     YTRKQVRLLCEWYLRVRKSS"
     gene            5160..6443
                     /locus_tag="OQQ72_003504"
     CDS             5160..6443
                     /locus_tag="OQQ72_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HCS2013104.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESISIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            6590..8065
                     /locus_tag="OQQ72_003505"
     CDS             6590..8065
                     /locus_tag="OQQ72_003505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS2013105.1"
                     /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF
                     MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA
                     VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS
                     IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN
                     ADYSLYVVDYCPDNHTATRGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA
                     SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT
                     NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ
                     QSIRPDDILARLEGEVFGLLFTELNSAQAKIIADRIRKNVELLTGFSNRYDVPEQMTI
                     SIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI"
     gene            8159..8245
                     /locus_tag="OQQ72_003506"
                     /pseudo
     CDS             8159..8245
                     /locus_tag="OQQ72_003506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            8246..>9089
                     /locus_tag="OQQ72_003507"
     CDS             8246..>9089
                     /locus_tag="OQQ72_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS2013106.1"
                     /translation="MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQ
                     KADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHK
                     YPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDL
                     NDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQN
                     VMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGREVAK
                     FSVPL"
BASE COUNT         2392 a         2181 c         2108 g         2408 t
ORIGIN      
        1 cttcggtcgc tctttttttt acctgataaa atgaagttaa aggactgcgt catgattaag
       61 aaaatttttg cccttccggt catcgaacaa atctcccctg tcctctcccg tcgtaaactg
      121 gatgaactgg acctcattgt ggtcgatcat ccccaggtaa aagcctcttt tgcattacag
      181 ggcgcacacc ttctctcgtg gaaacctgcg ggtgaagaag aagttctgtg gttgagcaac
      241 aacacaccgt tcaaaaatgg cgtcgctatt cgcggtggcg taccggtttg ctggccgtgg
      301 tttggtccgg cggcacaaca aggtctgcct gcgcacggtt ttgcccgcaa cctgccgtgg
      361 acgctgaaat cacatcatga agatgctgat ggcgtagcgc tgacttttga attgacgcaa
      421 agcgaagaga cgaaaaaatt ctgtccgcac gactttacgc tgttagcgca tttccgcgtg
      481 ggtaaaacct gtgaaatcga tcttgaatca catggcgaat ttgaaaccac ctctgccctg
      541 catacctact ttaacgtggg tgatatcgct aaggtaagcg tcagtgggct gggcgatcgc
      601 ttcattgata aagtgaatga cgcgaaagaa gatgtactga ccgacggtat tcagaccttc
      661 cctgaccgta ccgatcgcgt gtatctgaat ccgcaagatt gcagcgtgat taatgatgaa
      721 gcgctgaatc gtattatcgc cgtaggccac cagcatcatc tgaacgttgt aggctggaac
      781 ccgggaccgg cgctttcaat tagcatgggc gatatgccgg atgatggcta caaaacattt
      841 gtttgtgtag aaacggctta cgcttcagaa acgcaaaaag tcaccaaaga gaaacctgca
      901 catctggcgc aatccattcg cgttgcgaaa cgttaatttg cgttaatgtt gtgtgccggg
      961 tgcgatgcat ccggcacgta tcaacatcac accatatcca gcgcagtttt tccttttggt
     1021 gccggatacg ctttatccag catggttaat tccgctgacg aaagttcgac ctcaagcaca
     1081 gccgcattct gttgaacatg ggcaatcgtg gccgcttttg gaatcgccat cacaccctga
     1141 tggctgatta ccctcgccaa caatacttgt gccgagctga tattgtgagc atgtgcaatt
     1201 tcgttgacta ccgcgttttt taacagtcca ttgcgcaacc gcccggcctg ggctaatgga
     1261 ctgtaagcca tcaccggcat ctgctgttgc tggcaccagg ggagtagatc gtactcaatc
     1321 cctcgtgaac cgagatggta aagcacctga ttagtggcac actgatttcc ccccggcagc
     1381 tgccagagtt cctgcatatc agcataatca aggttagaaa cgccccagcg gcggattttt
     1441 ccctgggcga tcaatttttc catcgctgca acagtctctt caaaagcgaa actgccagac
     1501 cagtgtaata agtagagatc gagataatca gtattgagac ggcgtaaact ggcttcgcat
     1561 gcatttatcg ctttttgcct gccagcattc cacggataga ctttagagac gagaaagacg
     1621 ttatcacgca gaccggttaa tgcttcccca accacctttt cggcaccgcc atcggcatac
     1681 atttcggcgg tatcaatgag ggttaaaccg agctcaatgc ccgcgcgtag tgcagcaact
     1741 tctgttttgc gctgactggc atcttcgccc atataccatg ttccctgccc tatggctggc
     1801 agtgagacat cgccactaaa ttgaatcatt ttttgttgca ttgtttcctc ccaggtattg
     1861 caccaccgta atgcaaaaca gggcgtgacg ccctgttttt atgcacaaaa tgccctggaa
     1921 agatgcatta tcagaatttg taggtgatcc cggtagaaat caggccagtc caggatttat
     1981 ccaccatcgg gctgtcagta acttcatcag acagacgggt atagcgcgcg gtaccgtaaa
     2041 cactccagtc gccgaggaag ttgtagctgg cgctcagctc caggtaaggg ctccagctgt
     2101 cgttcgggtt atagccacgc agaccgctgc gagcggactc tttgcgcgat acgccataat
     2161 agtattcgtt ctggttttcg ctgttccact gcacaccaat acccggagtc acggtcaggc
     2221 caccgttggt gtaacgatac aaccaggcca tatcccagac aatgccgttg ctgttatcca
     2281 gggtatcgcc agccagggtg gtacgcaggt aaccgtactg ggtaaagtga gcataagaca
     2341 gaccagccat catggtgctc ttacggtcat ccaggtgacg catttggtga tcgccactgt
     2401 ctttcgcttt gaagtaaagc ggcgaccagt aagcggtaat tgaaagttta tccgttgcgt
     2461 cattccacag gtagtaacca ccacctaagc cacggaacca gaagttatcg ccttcatagt
     2521 tgattaccgg tactgggtaa acatcggtat cgtaatcttt atatgggtgc tcaacgacac
     2581 ctacgcctgc gcccaaggaa aatttacctt cagcgtgcgc tacgcctgca gacgttgcga
     2641 taagcactcc aagtgccaga agtttgagtt tggtcacaat taatcattcc ttaaacaaat
     2701 gtttagcggg cgacaaagtt tacccgtcaa tacatcgaaa cccaaccttt ttacgttttc
     2761 attttttaaa gtaactgttt aattttcctg ccgcggatga caccgcgctt acagccaaat
     2821 gaatttagcg ttactggcga gcctggtctt tacattaatt atgcaaaatt tatggatgag
     2881 ttgttgatat gccattgaaa ttaagaaagc cgtgcaggca agttttccat ttgccatcta
     2941 cgcttaattt tgaaggtgta tcaccgggca cgttgttctc atcgtcgata aaatggcatg
     3001 agagttgctg tgttttagca agagacgtcg ttcagtttac ctcttccggg aggctctact
     3061 attcatatga acggctctta acctgtgcta aaaaacgaaa ggacggcata ccatgaatat
     3121 attcgatcac tatcgccagc gatatgaagc tgccaaggac gaagagttca cactgcagga
     3181 gtttcttacc acttgtcggc aagatcgcag tgcttatgcc aacgcggctg agcggctatt
     3241 gatggctatc ggtgagcctg tcatggtcga tacagcccag gaacccagac tttctcgact
     3301 cttttctaac cgggtcattg cacgttatcc ggcgtttgaa gagttttacg gcatggaaga
     3361 cgcgattgaa cagattgtct cttatctgaa acacgcggct caggggctgg aagagaagaa
     3421 acaaatcctg tatctgctgg ggcctgtggg tgggggtaaa tcatcgcttg ctgagcgact
     3481 gaaatcatta atgcagctcg taccgattta tgtattgagc gccaacggtg agcgtagccc
     3541 ggtcaacgat catccgttct gtcttttcaa tccgcaggaa gatgcgcaga ttctggaaaa
     3601 agagtatggc attcctcgcc gttatctcgg caccatcatg tcgccgtggg cggcaaaacg
     3661 cctgcatgaa tttggtggcg atatcactaa gttccgggta gtgaaggtct ggccgtcaat
     3721 tctgcaacaa attgctatcg ccaaaacgga acccggcgat gagaacaacc aggacatctc
     3781 cgcgctggtt gggaaagtcg atattcgtaa actcgaacac tacgcgcaga atgacccgga
     3841 cgcctacggc tattccggtg cgctgtgccg cgccaatcag gggatcatgg aattcgttga
     3901 gatgtttaaa gcaccgataa aagtgctgca tcccttgtta accgccactc aggaaggtaa
     3961 ctacaacggg acggaaggta tctccgccct gccgttcaac gggattattc tcgcccactc
     4021 gaacgagtcc gaatgggtca ctttccgtaa taacaaaaac aacgaagcct tcctcgaccg
     4081 tgtttacatc gtgaaggtgc cgtattgctt gcgcatttcc gaagagatca aaatctacga
     4141 gaaattgctt aatcacagtg aattgactca cgccccatgc gcccctggca cgctggaaac
     4201 actgtcacgt ttttccattc tttcgcgcct gaaagagcca gaaaactcca gcatttattc
     4261 aaagatgcgg gtttatgatg gcgaaagtct gaaagacacc gatcccaaag ccaagtcgta
     4321 tcaggaatat cgtgactacg ccggtgtcga tgaagggatg aacggtctgt cgacgcgttt
     4381 tgcgtttaag atcctctccc gcgtgttcaa cttcgatcat gtagaagtgg cggcaaaccc
     4441 ggtccatctg ttctacgtcc tggaacagca gatcgagcgc gagcagttcc cgcaagagca
     4501 ggcagaacgc tatctggagt tcctgaaagg ttatctgatc ccgaaatatg ccgagtttat
     4561 cggcaaagag atccagacgg cctaccttga atcctattcc gaatatgggc aaaacatttt
     4621 cgaccgttat gttacctacg cggatttctg gattcaggat caggagtatc gcgatccgga
     4681 taccgggcag ctgtttgacc gcgagtctct taacgccgag ctggagaaaa tcgagaaacc
     4741 ggcggggatc agtaatccaa aagatttccg caacgagatt gttaacttcg tactgcgcgc
     4801 cagagcgaat aacagcggac gcaatccgaa ctggaccagc tatgaaaaac tgcgcacggt
     4861 tatcgagaag aaaatgttct ccaataccga ggagctgttg ccggttatct cgtttaacgc
     4921 caaaacgtca accgacgagc agaagaaaca cgacgacttt gtcgaccgta tgatggaaaa
     4981 aggctacacc cgtaaacagg tgcgtttact gtgcgaatgg tatttgcgcg tacgtaaatc
     5041 gtcttaacaa ccctggcccg gtacacatgc taccgggcct acaacgacag cgaaccgtgg
     5101 gccagagaaa tggcaacaca ggcgtagcat acagttggca aatgtagtac ggggggcata
     5161 tgacctggtt tattgaccgg cgtctgaacg gcaaaaacaa aagcatggtg aatcgccagc
     5221 gttttttacg ccgttataaa gcgcaaatta aacagtcgat ctccgaggcc atgaataagc
     5281 gttcggtgac tgacgtcgac agcggcgaat ccatatccat tcccacggaa gatattagcg
     5341 aaccgatgtt tcatcagggg cgtggcggcc tgcgccaccg cgtacatccg ggcaatgacc
     5401 atttcgtcca gaacgaccga attgaacgtc cccagggtgg cggcggaggt tccggcagtg
     5461 gtcagggcca ggccagccag gatggtgaag gtcaggatga atttgtcttt cagatttcga
     5521 aagatgagta tcttgatctg ctctttgaag atttggcctt accgaatctg aaacaaaacc
     5581 aacaacgcca gctgaccgaa tataaaacgc atcgggcggg ttataccgct aacggcgttc
     5641 cagccaatat cagcgttgtg cgttccttgc agaactcact ggcgcgacgc acagccatga
     5701 cggcgggcaa gcgacgggaa cttcatgcgc tggaagagaa tttggccatc atcagcaaca
     5761 gtgaacctgc gcaactgctg gaagaggaac gtctgcgcaa agaaattgca gaattacgtg
     5821 ccaaaattga acgcgtccct tttattgaca ccttcgattt acgttacaag aactacgaga
     5881 agcggcccga tccctccagc caagcagtga tgttttgcct gatggacgtt tccggttcaa
     5941 tggatcaatc cactaaagat atggctaagc gtttttatat tctgctgtat ctgttcctca
     6001 gcagaacgta taagaacgtg gaagtcgtat acatccgcca tcatacccaa gcgaaagaag
     6061 tcgatgaaca tgagtttttc tactcgcagg aaacaggcgg caccattgtt tccagcgccc
     6121 tgaaactgat ggatgaggta gtgaaagagc gttataaccc ggcacagtgg aatatttacg
     6181 ctgcacaagc atcggacggc gataactggg ccgatgactc tccgctttgc catgaaatcc
     6241 tggcgaaaaa attattacct gttgttcgtt attacagcta tatcgaaatt acccgtcgtg
     6301 cacatcagac attgtggcga gaatatgagc atctgcaatc tactttcgac aactttgcga
     6361 tgcagcacat ccgcgaccag gatgatattt atccggtgtt ccgtgaactg tttcataaac
     6421 aaaatgcaac agctaaagac taaaactatc agccaggtca ttatcgcctg gctgattttt
     6481 agcttactgt aaattatctc atttattaca tacattagct tacaatcgct ttaaatatga
     6541 cagcataacc tttacataat ttagttccag aaaacaatca ttcggaaaaa tgattcagtc
     6601 aacacgtatt tccatggggt tattctttaa atatttttta tcgttaacga aaattgatcc
     6661 tggtcaaaac tatatatctc tgccatcaat aaaatccagc actcacattg ctctcctttt
     6721 tatggtttct atgggtacac aaaaattaaa agctcaaagc ttttttattt tcagtttatt
     6781 gctgacatta attttatttt gcattactac cttatataac gaaaacacaa atgtaaaact
     6841 catcccacag atgaattacc tgatggttgt tgtggctttg tttttcctta acgccgtcat
     6901 ttttcttttc atgttaatga aatatttcac taacaaacaa attttaccaa cactcatttt
     6961 aagccttgca ttcttaagtg gccttatcta tttagttgaa accattgtaa ttatccataa
     7021 accaattaac ggcagtacac tgatccagac aaagtcgaat gatgtttcta ttttctatat
     7081 tttccgccaa ctcagtttta tttgtttaac ctcgctggca ctcttttgtt atggaaaaga
     7141 caacatcctt gacaacaata agaaaaaaac gggaatcctg ttgctggcgt tgattccttt
     7201 tttagttttt ccccttctgg cacacaatct gagcagttat aacgctgact attctttgta
     7261 tgtcgtcgac tactgtccgg acaaccatac tgcgaccagg ggaatcaact atacaaaaat
     7321 attggtttgt ctgtgggcat ttttactgtt ctttattatc atgcgtacac gattagccag
     7381 cgaactatgg ccgttaatag cattattatg tctggcatcg ctatgctgca acttacttct
     7441 actgactctg gatgagtata attacaccat ctggtatatc agtcgcggga ttgaagtttc
     7501 cagtaaactg tttgttgtgt cttttctgat ttataacatt tttcaggagc tgcaactctc
     7561 cagcaaactg gcagttcatg atgtgctgac caatatttat aatcggcgct actttttcaa
     7621 cagcgtagag tcattattgt cgcgacctgt tgttaaggac ttctgtgtca tgctggttga
     7681 tattaatcag ttcaaacgca tcaatgccca atggggacat cgtgtgggtg ataaagtgct
     7741 ggtttcaatt gtcgatatta tccagcaaag catccgccct gatgatattt tagcgcgact
     7801 ggagggtgag gtgtttggct tgctatttac cgaactcaat agtgcccagg caaaaatcat
     7861 tgcggatcgt atacgtaaaa atgtcgaact cctgaccggc tttagtaaca gatatgatgt
     7921 tcctgaacaa atgaccatca gtattggcac ggttttttca acgggtgaca cgcgtaatat
     7981 ctcgcttgtc atgacggaag cagataaagc cttacgcgaa gcgaaaagcg aggggggcaa
     8041 caaagtgatt attcatcata tttaagtgca aaaatattca gagccatgct ttttgcgtgg
     8101 cttttgcata caatttatta ctattacccc taaatttccc ctccccagcg gcgcagagat
     8161 gagtataatt agcgcccctg tgccaggccg caatcgaact ttatctggtt ttctcgtttc
     8221 actaactgaa ggagtgccat ttatcatgaa attgcaccat agaatgctcc ggcattttat
     8281 cgccgcaagt gtcattgtgc tgacatcttc cttccttatt tttgaacttg tcgccagcga
     8341 cagagcaatg agtgcctatc tgcgctatat cgtgcagaaa gcagactcct cctttcttta
     8401 tgataagtat cagaatcaga gtattgccgc gcatgtgatg cgcgctctcg ctgctgagca
     8461 gtcggaagtg tcgccagaac agcggcgcgc catctgcgag gcttttgagt ctgccaataa
     8521 tacccatggc ttaaacctga ctgctcataa atacccgggc ttacgcggca cactacaaac
     8581 cgcatccact gactgcgaca caattgtgga agctgcagca ctattacccg cttttgatca
     8641 ggcagtggaa ggcaaccgcc accaggatga ttacggttca ggtcttggga tggccgaaga
     8701 gaaatttcac tattatctcg atctcaatga ccgctatgtc tatttttatg agccggttaa
     8761 tgttgaatac tttgcgatga ataactggtc cttcctgcag tcaggaagta ttggtatcga
     8821 tcgcaaagat attgaaaagg tatttaccgg gcgtaccgta ttgtcgagca tttaccagga
     8881 tcagcgtact aaacagaacg tgatgagttt gctgacgccg gtgtatgttg cagggcagct
     8941 aaaagggatt gtgctgctgg atattaacaa aaacaatttg cggaatatct tttacactca
     9001 tgaccgccct ctcctctggc gttttctcaa tgtcacgcta accgataccg attcggggcg
     9061 tgaagtggcc aaattcagtg tgccacttc
//
LOCUS       DAJVUY010000164         9045 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.164, whole genome shotgun sequence.
ACCESSION   DAJVUY010000164 DAJVUY010000000
VERSION     DAJVUY010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9045
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.164"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ72_003508"
     CDS             195..1028
                     /gene="ppsR"
                     /locus_tag="OQQ72_003508"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HCS2013107.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
     gene            1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ72_003509"
     CDS             1184..2230
                     /gene="aroH"
                     /locus_tag="OQQ72_003509"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HCS2013108.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGTQKIVGGQPLTYGQSITDPCLGWEDTE
                     RLVEKLASAVDTRF"
     gene            2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ72_003510"
     CDS             2362..2553
                     /gene="hemP"
                     /locus_tag="OQQ72_003510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HCS2013109.1"
                     /translation="MRYTDSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(2557..3993)
                     /locus_tag="OQQ72_003511"
     CDS             complement(2557..3993)
                     /locus_tag="OQQ72_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HCS2013110.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNIELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD
                     HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG
                     FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW
                     FARYRGRLQQDEVSDSERQQLIQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL
                     RNPFSDRDDDYVSRPPDWGKRLEVSCSS"
     gene            complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ72_003512"
     CDS             complement(4056..4769)
                     /gene="ydiV"
                     /locus_tag="OQQ72_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HCS2013111.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            complement(5015..5479)
                     /locus_tag="OQQ72_003513"
     CDS             complement(5015..5479)
                     /locus_tag="OQQ72_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS2013112.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ72_003514"
     CDS             complement(5557..6306)
                     /gene="btuD"
                     /locus_tag="OQQ72_003514"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HCS2013113.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGRIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVGLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ72_003515"
     CDS             complement(6306..6857)
                     /gene="btuE"
                     /locus_tag="OQQ72_003515"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HCS2013114.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEDPIVMESIKLALAK"
     gene            complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ72_003516"
     CDS             complement(6920..7900)
                     /gene="btuC"
                     /locus_tag="OQQ72_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HCS2013115.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELLIGVVTATLGAPVFIWLLLKARR"
     gene            complement(8109..8438)
                     /locus_tag="OQQ72_003517"
     CDS             complement(8109..8438)
                     /locus_tag="OQQ72_003517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013116.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            complement(8546..8908)
                     /locus_tag="OQQ72_003518"
     CDS             complement(8546..8908)
                     /locus_tag="OQQ72_003518"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013117.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
     gene            complement(8911..>9045)
                     /locus_tag="OQQ72_003519"
     CDS             complement(8911..>9045)
                     /locus_tag="OQQ72_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS2013118.1"
                     /translation="MNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVRFNPLGGA
                     "
BASE COUNT         2389 a         2395 c         2050 g         2211 t
ORIGIN      
        1 gttgcgcaaa cctgctctat tcgacaattt ccacataaac catcggtata aacgaaacca
       61 taaaaatgaa atgctgtttt cataaaaaat aaaattgaag gttcatttta taaaccagac
      121 attacctcct acgcttctgt gcgtttttaa tttatgcttt catagaatta tgtctgcatc
      181 acgggaagaa caaaatggat aatgctgttg atcgccacgt tttttatatt tctgatggta
      241 cggcaataac tgcggaggta ttaggacacg cagtaatgtc acaatttccc gtcactatca
      301 gcagcattac gctgccgttt gtcgaaaatg agagccgtgc acgggcagtg aaggatcaga
      361 ttgacgcaat ttatcaccag acaggtgtgc gcccgctggt cttctactcc atcgtgttgc
      421 cggagattcg cgccatcatc ttgcaaagtg aaggcttttg ccaggatatc gttcaggcgc
      481 tggttgcccc gctacaacaa gagatgaaac tggatccaac gccgattgct catcgtaccc
      541 atggccttaa ccctaataat ctcaataaat atgatgcgcg cattgcggcg attgattaca
      601 cccttgccca cgatgacggc atttcgttgc gcaatctgga tcaggctcag gtgatcctgc
      661 tcggtgtttc tcgctgtggt aaaaccccca ccagtctgta tctggcaatg caatttggta
      721 tccgcacggc aaactacccc tttattgccg acgatatgga taatctggtg ctacccgcgt
      781 cgctcaaacc gcttcagcat aaattgttcg gcctgactat cgacccggaa cgtctggcgg
      841 cgattcgcga ggaacgtcgg gagaacagtc gctatgcctc gcttcgtcag tgcagaatgg
      901 aagtcgcgga agtggaagcc ttgtaccgta aaaatcagat cccgtggatt aacagtacca
      961 attattcggt agaagagatt gccaccaaga tcctcgatat catgggcctt agtcgccgaa
     1021 tgtactagag aactagtgcg ctggtttgtt ttttgttatc atgctaacca cccggcgagg
     1081 tgtgacacac ctcgcacttg aaatcagctg cgattggttt atcgtgatgc gcatcacttc
     1141 ccggtagtcc tgccgtagaa gcaacaaatt tctgagactt gtaatgaaca gaactgacga
     1201 actccgtact gcgcgtattg agagcctggt aacgcccgcc gaactcgcgc tacggtatcc
     1261 cgtaacgcct ggcgtcgcca cccatgtcac cgactcccgc cgcagaattg aaaaaatact
     1321 gaatggtgaa gataagcgac tgttggtcat tattggcccc tgctcgatcc acgatctcac
     1381 cgctgcaatg gagtacgcca cccgtctgca gtcgctgcgc aaccagtacc agtcacggct
     1441 ggaaatcgta atgcgcacct attttgaaaa accacgaact gttgtcggct ggaaagggct
     1501 aatctccgat ccggatttaa acggcagcta tcgggtaaat cacggtctgg agctggcgcg
     1561 caaattactt ttacaggtaa atgagctggg tgtccctacc gcgactgagt ttctcgatat
     1621 ggtgaccggt cagtttattg ctgatttaat cagttggggc gcgattggcg ctcgtactac
     1681 cgaaagtcag atccaccgcg aaatggcttc agcactctcc tgtccggtag gttttaaaaa
     1741 tggtaccgat ggcaacacgc ggattgccgt ggatgctatc cgcgcagccc gcgccagcca
     1801 tatgttcctc tcgccagaca aaaatggtca gatgaccatc tatcagacca gcggcaaccc
     1861 gtatggccac attattatgc gtggcggcaa aaaaccgaat tatcatgccg atgatatcgc
     1921 cgcagcctgc gatacgctgc acgagtttga tttacctgaa catctggtgg tggatttcag
     1981 ccacggtaac tgccagaagc agcaccgtcg ccagttagaa gtttgtgagg atatttgtca
     2041 gcaaatccgc aatggctcta cggcgattgc tggaattatg gcggaaagtt tcctgcgcga
     2101 aggaacgcaa aaaatcgtcg gcggtcagcc gctcacttac ggtcaatcca ttaccgaccc
     2161 gtgtctgggc tgggaagata ccgaacgcct ggtcgaaaaa ctcgcctctg cggtagatac
     2221 ccgcttctga atgcgtgccc attcctgatg ggatgggcat ttctgcgcaa cttgttgtct
     2281 tctcaacaca ttactgcttg ctctggcctg ccataatatt gataataaga atcattgtta
     2341 tatcaattat tattaatttt tatgcgttat acggatagca gaaaactcac gcctgaaacg
     2401 gatgccaatc acaagaccgc ttccccgcag cccatccggc gaattaccag ccagacactg
     2461 ttaggtccgg atggcaaact gattatcgat catgacgggc aagaatatct gctccgtaaa
     2521 actcaggctg gcaagctgct gttaactaag tagcctttaa ctcgagcagc tgacttccag
     2581 ccgtttaccc cagtcaggtg gacgactgac atagtcatca tctctgtcgc tgaaaggatt
     2641 tcgcaacgcc tcatgcaggc ggtgcaattc catcatatca cccttttctg ccgcttcaat
     2701 cgcccgttgc gccaaccagt tgcgcaatac cagagctggg ttaacgcttt gtatcagttg
     2761 ctgacgctca ctatcgctaa cctcgtcttg ttgcaaacgc ccccgataac gggcaaacca
     2821 gtcatcaaat gccgcacgat caataaactc atcacgtagc ggtgacgccg cgctgtgctg
     2881 ctcggtcaga ctcagcatgc ggaatgtgcg ggtataatcg ctgcgctctc gcgccatcag
     2941 actgaataat tcattcagta gcgcgttatc ctctttttgc tccgtcatga agcccagttt
     3001 ctgccgcatc cgttgtccat aatgcgtcaa caaaacctgc tgatagctgt ccagggcctc
     3061 attcagggca tctacggcaa caaatggtga caatgtctgc gccagacgct gtaaattcca
     3121 caacgcgaca gcaggttgat tatcaaagct ataacgccct tgatgatccg agtgattaca
     3181 aataaaaccg ggttcgtaat catcaagaaa accaaacggc ccgtaatcaa gcgtcagtcc
     3241 cagcagcgac atgttgtcgg tattcatcac cccatgtgca aagccgaccg tctgccattg
     3301 ggcaattaac gacgcggtac gtgcgacaac atcgctaaac cagagacggt atttgtcctc
     3361 atcatcttca agatgtgacc agtaatgacg aatagcaaag tcagctaact gacgaacctt
     3421 ttccgactcg cggcggtagt aaaaatgttc gaaatgacca aagcgcagat gacttggtgc
     3481 cacacgcatc agcatcgcgc ctggctccgc cgtttcccga tacactggcg aatcgctggt
     3541 gacgatactt aacgcgcggg tcgtcggaat gcccagataa tgcatcgcct cactggcgag
     3601 actttctcgt atcgtcgaac gtaaaaccgc ccgtccatca cccattcgcg aataaggcgt
     3661 caggccagca cctttcagat gccagtccat tgtagtgcca tcagcaagca gttgttcgcc
     3721 gagtaaaatg ccgcgcccat cacccagttg gcccgcccag acgccgaact gatgaccact
     3781 gtaaacctgc gccagtggtg acataccagg cagtagggct tcgccgcccc agacacctgc
     3841 gccattttta aacagcgacg atggaatact cagcgtgtta gccagttcga tattatgcca
     3901 aatcagccgg gcattattta aaggcgtagg ggaaagtgct gtataggttt ctggcaattc
     3961 atcgcgccag cgggtaacaa aagacagggt catagatcct cctgtttgat agtgtagacg
     4021 gttactctcg tcttaaacac cagcaaacag aagggttatc gctgaaccaa cgtcgttatc
     4081 tgatttatgg gaacggcagg ccacaggcat ccctggagag catggaaatc gaagggggta
     4141 atctgtgcca atatttctgc cgtatcaatg cctcccgcaa tgatgcaatt gcaacaaggg
     4201 gaaatttgcg cctggatcgc acgaataaac ggttcgaagg agcggtgcgt gatttgttgc
     4261 tgaataaaac ttttatccag catgacgcgg gtgaaaagac catcaaaaac cgctttcatt
     4321 gtgctattgc ctgctcccaa attacctaac acaaggggat acacttgcga taaggataaa
     4381 agaccgcgat tatcttttcc ttcattgaga tgcgggtaat tctcattaat caacagttca
     4441 ataaacggat attttaatag ttcgcctgcg taattatccc tctctaataa taatgtagcc
     4501 acttgtggcg ttaaattaag ccaggcaaag agtttatgtt gaataaaaaa atgttggcat
     4561 gattttagta attccaactg ctctgaaaat aattgccaat gttgctcctc ggtaagttgc
     4621 gctataaccc gactcgtcgg gatacgcacc gtgccatctt cactggagaa atgggtaatt
     4681 aactcaacgc cgacaaggac ttgctggtta tctcttatcg gcaggaaata gcaatcagaa
     4741 tgataaagat tctccaaaaa aatcttcatg gtaaccgtcc ctctcgaagg atgtttttca
     4801 gtatccggct aaaagggatg aggccataag acataacaat tacagaagga gtaactttca
     4861 tttgttccat gttaaccact ttttcagggg tcttttttta gattatcctg attataaacg
     4921 aataatccat ttacggaatt tttgtctgca aaatactact gtattcagga gtaaatggac
     4981 ggcgatgtat catcgccgtc catttttcga catactagat tcgtctcgcc tgccagaaat
     5041 ttttctgcca atagacatta tcaagtgagg aacgcatcac tcccttgctg gtagaggcgt
     5101 ggataaattg gttgttggta tcgtaaatac ctacatgcaa accattttgt ccggaccccg
     5161 ttttgaaaaa gaccaggtca cctggcagca acttgtcttt atcaatttgc gtgccaatag
     5221 aggcttgttg tttggtttca cggggcagct gcaaatcgaa acgatcgcgc atcgtcacaa
     5281 ccacaaatcc cgaacagtcc acaccgcgcc gcgtcatgcc accataacga tacggcgtgc
     5341 catgccagct ttgtagctgg tcgttcaaac cggcaataac ggtaatcgaa tcagaaagtc
     5401 tggcatttgg cggcggtgct ttatggtggc tacacccggc cagaaacagt gctgtgatca
     5461 aaataaggca gaaacgcatt ccgtacggtt cctctgtttt ttattcttgc attaatttag
     5521 cgtcgtaatt acccgatttt caagatacta atgaaatcag atggtcaaaa tcagcattct
     5581 gtgaccttcg atatccagac ggcgaaaatt catcccatag gcctgcgcca gatttggcgg
     5641 cgtgagcacc tcttctctgc gtccactggc cagcattttt ccacctttta gcaaccacgc
     5701 ccgatgcgca tgacgcaacg tgtggttgag atcgtgactg ctcatcacaa tcgccagtcc
     5761 ttgctgacac agcgcgctca gaattttgtc taacgcactt tgttgcgcaa catcaagact
     5821 gttcatcggc tcatcaagaa gcagcaattg gcctgcggga ttggcttgtg gtgtgatttg
     5881 caacaccacc gcagcaagac ctacgcgttg ccattcaccg ccggaaagtt gattggtgct
     5941 acgaccgagt ttgtcatcaa gagccagcgc ccctgcgaca tcattcagta gttcggtacg
     6001 cgttttatcg tgctgatgca gtgtcaggta gtgccagacc ggcattgcaa acggcggcgt
     6061 ctgctgttgt gaaagatagg cgcgatgcag cgcgagtttt gttgcggacc atgcttccag
     6121 gggttgcccc gcgaactgaa ttcttccctt accgctggtc attccggcca ttcgtgcaag
     6181 caaggtactc ttacccgcgc cattcggccc caccaggtgc aggatctccc cagcccgaac
     6241 ctcgccagaa agtggcccta ggcgggtaga ttccgcaaca tcctgtaact gcatcacaat
     6301 agacattatt ttgccaacgc cagtttaatg ctttccatca caatggggtc ttccggcgtc
     6361 atatccgggg aaaaacgctg gatgaccaat ccgtccctgc caactaaaaa tttctcaaaa
     6421 ttccataaaa tatcatcagg gtacagcggt gcacgacctt tgctgaccat acgggcatag
     6481 aatccgctct cttccggcgc gactgcggtc ggcgctgcgg caatcaattt ttgatacagc
     6541 ggatggcgtc cttcgccgtt aacttcaatc ttactgaaca tcgggaacgt caccccccat
     6601 gtggtggtac agtaagtttt aatctcttca tcgctgcccg gttcttgttc cagaaactgg
     6661 ttgcacggga atcccagcac cacaaaacct cgatcggccc aggctttctg aatattctcc
     6721 aactgctcat attgcggcgt taagccacac tttgaggcga cattgacaat caacagcaca
     6781 ttaccggcgt acttctccag cgtggtcact tcaccgtcga tatctttcac tacggtcgtc
     6841 agaatggaat cttgcatcgt ttctcctggg tgtggtcagt aaaaatctta gcttttaatc
     6901 atagaccgtc tttttgcggc taacgtcttg cttttaacaa taaccagata aacaccggcg
     6961 cacccaacgt tgcggtgacc acgccaataa gcagctctgc ggcagctaat gccaggcgcg
     7021 ctacaatatc ggccagcagc aatgcgctcg cccctgccag cgcgcagccg ggaagtaata
     7081 cgcgatgatc ggttaaacca cacaaccgaa gaatatgtgg gatcaccaga ccaataaagc
     7141 cgatagcacc cgccagcgcc acactgacgc caaccatcca gccggtcgcg gccaccagca
     7201 cattgcgcca gaaccacagg ggtaaaccca gttgccgcgc cgagatctcg ccaagtgcta
     7261 acatattcat cggcctggac tgacaacaga tccacaacaa cacggggatc aatgccagca
     7321 tcagccagct ttgccgccag tctacgccgc caaaaccgcc catcatccag tacatcagct
     7381 gacgtaaatc aacagaggtg gaaaagtaga tagcccacgt cattagtgcg ctacagataa
     7441 tccctaatgc aacgccagcc agcaataacc gactggtcga aagatgacga cgggcgaaac
     7501 gtaagagtat taaagtaatg ataagcgcgc cagcaatcgc acacagccct agcgcccagt
     7561 tggggagttg cccttgccca agcaataccg cggcgataag ccccacgcct gcgccgttag
     7621 agacgccaag tagtccaggt tctgccagag gattttcaaa caacgcctgc attacagcgc
     7681 cggatatagc cagcgccgca ccaaccaaca atacagccag cgtacgtggc aggcgaattt
     7741 gccagacgaa cagttcgcca cgaggagtaa accagtcacc tagcgagatc cattgttcac
     7801 cggcgcaaag gcttaaaaga agcgccagca gcatcaaaac tgacaggcat aataaccagc
     7861 gaatattttg tcgctgttgt tggcgggcaa gtgtcagcat ggtatccgtt ctgctgaagt
     7921 gtcatggcgt tgattttacg gtgactcttc gacagtgaaa agaaaaaagg ccgcagagcg
     7981 gccataaaca caagtaaaaa tcaacaagtt agataattat caaagactta cagacacaca
     8041 aaaacacagc caaccacaac aaataacagg gatgtggtca ctttgtggat catatcgccg
     8101 ccataaattt acttaataac agtaaccaca gccacaagca cggccatcgc agacaggaca
     8161 atacctgtga gtaaccaagt ctgatttgca aatgatttct gaagttcagt acgatgctca
     8221 gccatctcaa ctttcagaga ctggcgtaaa tcagccatct cagacttcag ggattggcgc
     8281 gattctgcca tctcaagcct caacccttcg cgaatctcca gtacatcaga tttggtagca
     8341 aaggattcgc ttcttgtggt gagagtaatc aggttgtttt tgatttcagt cacatcactt
     8401 tccaggcaac tgacccgccg ttcaaggtcg tcattcatgc catcacctcc atcattacca
     8461 cttcctgtta cttggttgtt ggatacatta taggcattct ctttcttttt tctgaaccgc
     8521 gaaatatgtg caacattctc tgccatcact tctcatcacc ctgcttgcct acccagttca
     8581 taaaggcccg ggccgagtaa cgatgaacaa acccacatct gttacaggta agtcggaatt
     8641 catagttatg gatattttcc cgatcatgtc cctcatatcc cggataccca gtaaatggac
     8701 cgatgtaatc aagcataaca aaagtgccta aatcacactc ctcagcagtt ttcggctcag
     8761 gccccacctc aacaatattc gtcaaataca tgtacatatc cgtatcgcca cacgacaaac
     8821 atttttcatt cgtagacgac tcattgagaa aacgcgcaaa attatcgagc gttgccattc
     8881 ttttaagttc atctaaatga aacttcactc ttaagcacct cctagtggat taaacctcac
     8941 cgcatcctgc aggtaatccg gcgcaagatg ggcataaatc atcgttgtct gaatctttgc
     9001 gtgccccaga attttctgga gcgtcagaat attgccgccg ttcat
//
LOCUS       DAJVUY010000165         8945 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.165, whole genome shotgun sequence.
ACCESSION   DAJVUY010000165 DAJVUY010000000
VERSION     DAJVUY010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8945
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.165"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(264..1235)
                     /locus_tag="OQQ72_003520"
     CDS             complement(264..1235)
                     /locus_tag="OQQ72_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000817038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family plasmid partition
                     protein"
                     /protein_id="HCS2013119.1"
                     /translation="MKRAPVIPRHTTHSQSTEDTSSPAPAAPMVDSLIARVGAMARGN
                     AISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQ
                     TPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSA
                     YERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSA
                     RSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLS
                     SRHQFAPGATALYKGDKMVLNLDRSRIPAECIEKIEAILKELEKPGV"
     gene            complement(1235..2401)
                     /gene="sopA"
                     /locus_tag="OQQ72_003521"
     CDS             complement(1235..2401)
                     /gene="sopA"
                     /locus_tag="OQQ72_003521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid-partitioning protein SopA"
                     /protein_id="HCS2013120.1"
                     /translation="MGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGE
                     AADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAE
                     DAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL
                     HIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPA
                     DPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQ
                     FFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRE
                     TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR"
     gene            3142..4152
                     /locus_tag="OQQ72_003522"
     CDS             3142..4152
                     /locus_tag="OQQ72_003522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HCS2013121.1"
                     /translation="MTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLF
                     VPTLKSTGKSKANRKNVTDATEELVQLAIAKSEGYTDVKITGSRLDMDTDFKVWLGII
                     RSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETK
                     GWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYT
                     YIESLPQNPAPISMKRMRDRLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRAT
                     YFSVHYRNPKLISSPVKVPRKEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKP
                     EN"
     gene            complement(4958..5287)
                     /locus_tag="OQQ72_003523"
                     /pseudo
     CDS             complement(4958..5287)
                     /locus_tag="OQQ72_003523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
     gene            5405..6130
                     /locus_tag="OQQ72_003524"
     CDS             5405..6130
                     /locus_tag="OQQ72_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS2013122.1"
                     /translation="MAYSIGEFARLSGITATTLRAWQRRYGLLKPQRTEGGHRQYSDE
                     DVQQALKILDWVKKGVPIGQVKPLLERPTSRLTNNWLTLQQSMLQRLQDGKIESLRQM
                     IYDAGREYPRPELVANVLRPLRSQVSANVAAAMTLREILDGIIIAYTSFCLEGDKKAP
                     GDNILLSGWNLNDPCEVWLEALTRTGQGHRIDILPTPPATLAPEIFPDRHWLLVTRGK
                     LTAARKKQIEQWQQQVSLEVIIL"
     gene            6230..6640
                     /gene="uraH"
                     /locus_tag="OQQ72_003525"
     CDS             6230..6640
                     /gene="uraH"
                     /locus_tag="OQQ72_003525"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000750474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS2013123.1"
                     /translation="MKKTASLLMLTTLAFAPAAFSAPAGTLSVHILDQQTGMPPSDVT
                     VTLEKQQQDKWTPIASGKTDHDGRIKSLYPEDQDMQPGVYKVAFKTADYFHGKKLDSF
                     FPEIPVLFTVTRTNEKLHIPLLLSQYGYSTYKGS"
     gene            6743..7702
                     /locus_tag="OQQ72_003526"
     CDS             6743..7702
                     /locus_tag="OQQ72_003526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000208729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 and DUF1722 domain-containing protein"
                     /protein_id="HCS2013124.1"
                     /translation="MTTKPVLGISGCLTGSAVRFDGGHKRMGFVMDELAQWVSFRPVC
                     PEMAIGLPTPRPAIRLTLTDSGETQLRFSKPPHDDITQKMADFTADYLPKIGDLSGFI
                     VCAKSPSCGMERVRLYDENGNRGRKEGVGLFTAALLETYPWLPVEEDGRLHDPVLREN
                     FIERVFALHELNTLRAKGLTRRALLDFHSRYKLQLLAHHQAGYREIGPFVASLHEWED
                     LDAFFVAYREKLMTILKKPASRKNHTNVLMHIQGYFRNQLNSRQRVELRDVILHYRDG
                     LLPILAPLTLLKHYMAEYPDRYLMTQNYFDPYPDDLGLRLAVT"
     gene            7848..8936
                     /locus_tag="OQQ72_003527"
     CDS             7848..8936
                     /locus_tag="OQQ72_003527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS2013125.1"
                     /translation="MITTLHIQNYRSIREMSLELEQLNIVFGPNGTGKSNIYKAIHLM
                     HSAAQGQFSQALANEGGILKVFWAGKTRSDQLRRMNLAVETETYEYELQVGFVEKLPY
                     PSQFQLDPVIKEESIWLSGQYRRPSSQLMKRKNQAVFLNNVHHEKVTHSGTLYENESV
                     FGQLGEPHLYPEVSQMRESLRNWRFYQEFSVSIGSAMRAPQVGFRSPVLASDGANLAA
                     AFQTIVEIGDELLLMRILDQAFPGCVFYSDNTGGRFRMMMQREGLSRPLEPAEFSDGT
                     LRFLCLAVALLSPRPPAFIALNEPENSLHPQMLPALASLIAEASRYSQIWLTSHSPEL
                     ANLIEKQRSFSLYQLSMVEGETKVERLG"
BASE COUNT         2261 a         2364 c         2292 g         2028 t
ORIGIN      
        1 caggcagata agctgaccgg cgatgcaggt gggaccgtgg tcccaggcag ataacctgac
       61 cggcgataca ggtgggaccg tggtcccagg cagataagct gaccgacgac gcaggtggga
      121 ccgtggtccc agggagataa cctgagcggc gatacaggtg ggaccgtggt cccagagaga
      181 atattcaggc cagttatgtt ttctggcctg tgagaaagga aatgaagtaa agggagatca
      241 ccgtagacta aagcgtgtcc gcatcagact cctggtttct caagctcctt aagaatggct
      301 tctattttct ctatacactc cgcaggaatg cgggacctat ccaggttaag caccatttta
      361 tcgcccttat acaatgctgt tgcccctgga gcaaactgat gacgtgagct cagattaact
      421 cttgatgcgg gagattgttt cagtacggat gttaaaagac taatgacctc ttcagcttca
      481 aagattagtc ccgctttctt ctgatcgtgg agagtctcag cctgctgctt cagtaattct
      541 tctttatctg caaaagcctt ctgaagggct tcacctgacc gggcagacag ttctccagga
      601 tgtgcaaaca gggcaacaac ggatttaggc aatttggccg tattgataca gcgggtaatg
      661 atcttacgag agatgttttc cgcatcggca agcgcagaaa tatttcctgc aaactcattc
      721 tgcagccggc ttgtataacg caggccacgt tcataagcac tcgtcggccg ataatcgtta
      781 cccagtcggg acaatgcagc catctgctca tcgtccagtt caccaaccag aacgcgataa
      841 tcactttccg tcaggattgc ggctttacgg cgacggctgc cgtcggcaat ttctatgaca
      901 tcagaaaccc ggcggccgaa agctggagtc tgctgaccgg tcagtaaaaa tgaaggaatg
      961 agatcatcca gagcatcttc ggtaagtagt tcctgatcgc gctcattgcc tgaccatacg
     1021 cgtgaagcgc tctcaacaga gtctccccgg agcacctcaa gggtaaattt cacttcccgt
     1081 ccacataccg gaagagagat tgcattaccg cgggccatag cacccacgcg cgcaattaat
     1141 gaatccacca tcggcgcggc cggcgccggt gatgaagtat cttcagtcga ttgactatgt
     1201 gtggtatgtc ttggaatgac aggagcacgc ttcattatct aatctcccag cgtggtttaa
     1261 tcagacgatc aaaaatctca ttgcaaacag gctcccagat agagagggca ttacgccagg
     1321 caccggttga agaacgttga tcaatagcct gttcaaaaac ggttctcata cggatctgac
     1381 ctttaccgac ttcatccgtt tcgcgcacaa catttttaag gaccatgctt ccccaggcat
     1441 cccgaatttg ttcttccatc cacggggact gtgagccatt attattactg tatttggtaa
     1501 gcagaatacg gacatctggc tcgaagcctt taagatccac gttcttaagc aggtcacgaa
     1561 gcatatcgaa aaactgcagt gcggaggtgt agtcgaacag ctctgccgga gtagggacaa
     1621 tcagaacatc agcagcgcat acaacattta tcgtaccgat accaaggttg ggtgcactgt
     1681 cgataactat cacgtcataa tcatgagcga cagtttcaat ggccagacgg agcatcaggt
     1741 gcgggtcagc aggtaatttg ccttcgtcaa atttccccat cagctcggtt tcaatgcggt
     1801 gcagtgccag acaggacggg atgatatcaa ggccaggcca gcaggtgggc tttatagcgt
     1861 agctggcgtc atccttttcc ccaagataaa agggcaggag agtgtcctca gcatgaatat
     1921 gaagatcggg cacccatccg tgatacatag aagcagttcc ctgtgggtca ttgccttcaa
     1981 caagcagaac acggagtcct ttcagagcaa gatcctgagc caggtgaacg gatactgagg
     2041 ttttgtaaac accacctttg tgagctgcaa cgccaatcac cggcggaaac gcatcttcag
     2101 cacggcgcag tcgtgtacca aatacatccc gcatgtgatt gatttgttcg atggtataac
     2161 caacgcgttg ctcaactctc ccacgggttt ccatatcagg gtgcggcagc cggccagctt
     2221 tctcggcatc cctgatagcc tgagatgaca cgccaactaa atctgccgct tcaccaatcc
     2281 tccagcgccg ggttattttc cgggcttccg gactgtcatc attaaactgt gcaatggcga
     2341 ttgctttcgt catttcatga ccagcactta tgcactggtt gagtgtatcc atgagtccca
     2401 tactgaacat cctttaatca tcactttgca ttattttatt aaatcttgga atttattgca
     2461 aagcaacaat aaaatcgcaa agcacacgaa aaagtgcaaa gtgaaccaca ttgggtaatg
     2521 aaagaacgca ggggattaca aaagagtaca taccgcagtc aatattaatc actgccgctc
     2581 gccgcagtaa gcgatctcac acagtgagaa agcggcgagg aagcggaaaa tcacagaact
     2641 cacagattgc acgtacgtcg ggttgctaaa gatgactcgg gatcagccag ttataatgaa
     2701 attgactgcg gtatgtaata tattgactat ggtatgatgc ttaccgcatc tgtaggaaag
     2761 acgactcagc ataccgcagt caatgtttca ttgttgtacc tgtagatctc aatcttccag
     2821 agcgtattca ggaaaatcag gccaggggtc tggatatctg gtgtggcgct tccggccttg
     2881 tatctgggtt attcatggtc tcgatccaat aattgatccc aaggagatca tagtgagatc
     2941 caaaagagat ccccggatcg ctccagcatg cgctgtaact ggctttaacg tctgtctgga
     3001 tcgactgcgg aatgtaaaat gttgactgtt atatgcataa tctaatactg tgatatgcaa
     3061 cggtatttac tgaggtatgt atatccgttg actgcgatac gtattactac atccttttgt
     3121 ggataaccgt tgaggatcaa gatgacgagc gaaaataata gcttacttct gaaccttcag
     3181 gaagttgata agacaaccgg tgaagttgtt aagctggatg tcaacagcac cagtaccgtg
     3241 cagccagtag cgctcatgag actcggtctc ttcgtcccaa ctctgaaatc aacagggaag
     3301 agcaaggcga accggaaaaa cgttacagac gcgactgagg agcttgtaca gctggccatt
     3361 gccaaaagcg aaggatacac tgacgttaag atcaccggtt cgcgtcttga tatggacacg
     3421 gattttaaag tctggctggg gataattcgc tccatgtcgg agtatggggt aaaaagtgac
     3481 accctggaac tgtcgttcgt cgaattcgtt aagatgtgcg gatttgactc ccgtcgttca
     3541 aacaaaaaaa tgcgcgatcg catcagtaat tccctgttta aactcgcctc ggttacgctg
     3601 aagttccaga gcgagaccaa aggatggacc acccatctgg tgcagtcagc ctattatgac
     3661 atcaacgagg atatcgttga gatcaaggct gaacctaagc tgtttgagct ttaccacatg
     3721 gacagaaggg tactgctgcg gctgaaagcc attgacgccc tgcagcgcaa ggaatcagcc
     3781 caggcgcttt atacctacat cgaaagtctt ccccagaatc ctgcacctat ttccatgaaa
     3841 cggatgcgtg accggctgaa tctcacctca aatgtctata cacagaacca cacggtgcgt
     3901 aaggcgatgg agcagctgcg tgatattggt tatctggatt acaccgagtt taaacgtggc
     3961 cgagccacct atttcagcgt gcattatcgc aaccccaaac tcatcagtag tcctgtgaag
     4021 gttccgcgca aagaggaaga agagaaggcg ccagagcaaa attatgacga agtcattaag
     4081 gcgctgaagg ctgctggcat cgatcctctt aaactggctg aagccctctc agcgatgaag
     4141 ccagaaaatt gactgcgata tgcatatcat gactgccgta tgccgctaag gacattccat
     4201 tgactgtgat atgcatcacg cataccgcag tcaatattta ttctctatca tgtctgcccg
     4261 gatcgaacaa tattgactgt catatgtgat ttcgggtcat gatacgcaga tattgactac
     4321 ggaatgcggg tttaatgggg gtaatccctg gtctgttcac cattccatgg gggataacat
     4381 gccacagtca atttttcagt aacgctctat atcccttacg aaaatctcaa tcgggtgctg
     4441 agacggtcat gttacctgac ggtatccgtt cccctgtgta ctgcaggttt agcccggcag
     4501 gatgagactg cagctgtctg tataacccgg cgccagcttc acactgttaa atgcgatcag
     4561 gaaacgggag ccgaatggca gaaaggtgtt ggctagggaa ggtgcgaata agcaggttat
     4621 ttcttcccaa gctgactcgc tgattaaaat ttcgcggatc tgggccgatt tttttcccgc
     4681 aaacacatcg aatcagccta tttaggggtc agtttggaga tcggaaattt ttgtacgtta
     4741 agcacattat ttaaccaatt cggatacgta agtgattgat ttatcgtcat tggctatcgc
     4801 ttttaggttg tcgctcttgc tgtatcgcat ttaggttatc cgattaagac aaaatcccct
     4861 gaaaacgctg tatagcgcgg gagtacaccc tattgctaca ggtaagcctg ttcaaaaaac
     4921 aggcttaccg tacaataatt ctctatatcc aaactgaccc caagaaggac accttcagcg
     4981 cggccgtggt cggttcgccg gtaaagtagg ctttaccctc gctctcattc cacttgttct
     5041 tcacagggtc gtagccgcgg ttaagcacgc tgatgccgcc gtcgctgcgc ttgccgtagg
     5101 tggcggtaac ctgctctagg ccgcgttcaa agcggttttc caggcgagcg acttcgtacc
     5161 atttgccaag atagcggctg gcgtcaaaac cggaaatggg ctgcacgccc ttcggtgggg
     5221 taggggattt acaggctacc agcgtcaggg caatggcaac accggtcaca acaggccata
     5281 gcttcatgag aattcctttc atttgcacgg ttggaaatta agtgtagtgc accgcggcgg
     5341 cgcttcatcc catccgcgaa aattcgtagt atattgagag tattcctcaa ctctggacac
     5401 ggacatggct tactccatcg gcgaattcgc cagactcagc gggatcaccg ccaccacgct
     5461 gcgggcctgg cagcggcgct acggcttact caagcctcag cgcacggagg gcggccaccg
     5521 ccagtacagc gatgaggacg tccagcaggc gctaaaaatc ctcgactggg taaaaaaagg
     5581 cgtcccgatt ggccaggtca aaccgctgct ggagcgccct acgtcgcgcc tgaccaacaa
     5641 ctggctcacg ctgcagcaga gcatgttaca gcgcctgcag gacggcaaaa tcgagtccct
     5701 gcgtcagatg atttacgacg caggacgcga gtacccaaga ccagaactgg tcgcgaacgt
     5761 gctgcgtccg ctgcgcagtc aggtgtcggc aaacgtcgcc gccgccatga ccctgcggga
     5821 gatcctcgac ggcatcatca tcgcctacac ctcgttttgc ttggaaggcg ataaaaaagc
     5881 gccgggcgac aacatcctgc tcagcggctg gaacctgaat gacccgtgcg aagtctggct
     5941 cgaagcctta acccgcaccg ggcaaggcca ccgtatcgat attttaccca cgccgcccgc
     6001 cacgctggcc ccggagattt tcccggaccg ccactggctt ctggtcacgc gcggtaaact
     6061 caccgccgcg cgcaaaaagc agatcgagca gtggcagcag caggtatcgc ttgaagtgat
     6121 tatcctctaa tcattttctc ctgcgggaat cttcacgaaa agttgaatat tttcccgcgc
     6181 cacaaatgct aacgttttcc tgtgaccgac aaccccacag gaaaacacaa tgaaaaaaac
     6241 tgcctctctg ctgatgctga ccaccctggc ctttgcccct gccgccttta gcgcccctgc
     6301 cggcacgctg agcgtacaca ttcttgacca gcaaaccggg atgccgccat cggacgttac
     6361 cgtcacgctg gaaaaacagc agcaggacaa atggacccca attgccagcg gcaaaactga
     6421 ccatgacggc cgcatcaaat cgctttatcc ggaggatcag gatatgcagc ccggcgtcta
     6481 taaagtggcc tttaaaaccg cagattactt ccacgggaag aagctggact ccttcttccc
     6541 ggagatcccg gtgctgttca ccgtaacccg gaccaacgaa aagctgcaca tccctctcct
     6601 gctgagccaa tacggttatt caacttacaa gggcagttaa gaaacgttga ttttaaaggc
     6661 aaataaaaaa taattccgct aatacttgga caaattagtt atgttgtgta agttttaaag
     6721 agaagaacgg gaggaccaca ccatgacaac aaaacctgtg ctcggtatta gcggatgttt
     6781 gaccgggtct gccgttcgct tcgacggcgg acacaagcgt atgggctttg tcatggatga
     6841 actggcccag tgggtgagtt tcaggcccgt ctgcccggaa atggcgattg gcctgccgac
     6901 gccacgcccg gccatacgcc tgacgctgac ggacagcggc gaaacgcagc tccgcttcag
     6961 caagccgccc catgatgata taacgcagaa aatggccgac tttacggcgg actatctgcc
     7021 aaaaatcggc gatctgtcgg gatttatcgt ctgcgcgaaa tcgccaagct gcggcatgga
     7081 acgcgtgcgg ctatatgatg aaaacggcaa ccggggccgc aaggagggtg tcgggctgtt
     7141 caccgccgcc ctgcttgaaa cctacccgtg gctgcccgtg gaggaagacg gtcggctgca
     7201 cgacccggtg ctgcgggaaa actttatcga gcgggtattt gccctgcacg agctgaacac
     7261 gctgcgcgct aaaggcctga cgcgccgcgc gctgctggat ttccacagcc gctataaatt
     7321 gcagcttctg gcgcaccatc aggcgggcta ccgcgagatt ggcccgttcg ttgcgtcgct
     7381 gcatgaatgg gaagatctgg acgcgttctt cgtggcgtac cgcgaaaagc tgatgaccat
     7441 cctgaaaaag cccgcctcgc ggaaaaacca taccaacgtg ctaatgcata tccagggcta
     7501 tttccgtaac cagctgaaca gccgccagcg cgtcgagctg cgcgatgtga tcctgcacta
     7561 tcgcgacggg ctgctaccca tcctcgcgcc gttgacgcta ctgaaacact acatggccga
     7621 ataccctgac cggtatctga tgacgcaaaa ctactttgat ccctatcctg atgatttggg
     7681 tctgcgtctg gcagtaacct gacgataaaa atgcgaaggc ccgtttgacc cacagaggcc
     7741 caaagcagta ccccgtttag acgacaccct cactgtcgtc tcttttttgc attccacaca
     7801 aaagactgta attatgtaca ggattgtaac gcaaaaaggg actgcctgtg atcaccaccc
     7861 tgcacattca aaactaccgc tcgattcgcg aaatgtcgct ggagctggaa cagctcaaca
     7921 tcgtctttgg cccaaacggc accggaaaat ccaatatcta caaggcgatc cacctgatgc
     7981 acagcgccgc acaggggcag ttttcgcagg cactggcgaa cgagggtggg attttaaaag
     8041 tgttctgggc aggcaaaacc cgcagcgacc agctgcggcg gatgaatttg gccgttgaaa
     8101 ccgaaaccta cgaatacgag ctgcaggtag gctttgtcga aaaactgcct tacccctcac
     8161 agtttcaact cgatccggtg atcaaagaag agtccatctg gctgagtggt caataccgcc
     8221 gcccgtcgtc acagctgatg aagcgtaaaa atcaggccgt atttctgaac aacgtgcatc
     8281 acgagaaagt cacccacagc ggcacgctgt atgagaacga atcggtgttc ggccagcttg
     8341 gcgagccgca tctttacccg gaagtgtcgc agatgcgcga gtcgctgcgt aactggcgct
     8401 tttatcagga gttttctgta tcaatcggct cggccatgcg cgcgcctcag gtcggtttcc
     8461 gctccccagt gctggccagc gacggcgcaa acctggcggc ggcgtttcag accatcgtgg
     8521 aaattggcga cgagctgctg ctgatgcgca tcctcgacca ggccttcccc ggctgcgtgt
     8581 tttacagcga caacaccggc ggacgcttcc ggatgatgat gcagcgtgaa gggctaagca
     8641 gaccgctgga gccggcggaa ttctccgacg gcactctgcg ttttctgtgc ctggcggtgg
     8701 cgctattaag cccgcgtcca ccggccttta tcgccctcaa cgaaccggaa aacagcctgc
     8761 atccgcagat gctgcccgcg ctggcgagct taatcgccga ggccagccgc tactcgcaaa
     8821 tttggctgac cagccactcg ccggaactgg cgaatttaat tgagaaacag agatcgtttt
     8881 cgctgtatca gctgtcgatg gtggaaggag aaacgaaggt ggagaggctg gggtagtctc
     8941 ccaga
//
LOCUS       DAJVUY010000166         8734 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.166, whole genome shotgun sequence.
ACCESSION   DAJVUY010000166 DAJVUY010000000
VERSION     DAJVUY010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8734
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.166"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ72_003528"
     CDS             244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ72_003528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HCS2013126.1"
                     /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ72_003529"
     CDS             1152..1757
                     /gene="ttdB"
                     /locus_tag="OQQ72_003529"
                     /EC_number="4.2.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
                     /protein_id="HCS2013127.1"
                     /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK
                     RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK
                     GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRGKEF
                     GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK"
     gene            1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ72_003530"
     CDS             1806..3269
                     /gene="ttdT"
                     /locus_tag="OQQ72_003530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tartrate/succinate antiporter"
                     /protein_id="HCS2013128.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVFGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLHIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ72_003531"
     CDS             complement(3312..4325)
                     /gene="tsaD"
                     /locus_tag="OQQ72_003531"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HCS2013129.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ72_003532"
     CDS             4562..4777
                     /gene="rpsU"
                     /locus_tag="OQQ72_003532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCS2013130.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ72_003533"
     CDS             4888..6633
                     /gene="dnaG"
                     /locus_tag="OQQ72_003533"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS2013131.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ72_003534"
     CDS             6828..8669
                     /gene="rpoD"
                     /locus_tag="OQQ72_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HCS2013132.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2110 a         2330 c         2333 g         1961 t
ORIGIN      
        1 cctgcaagtc tttggctaaa ggccagctat tcagcatcgt taattatccg cagttgtgat
       61 aagcgcagtg tatttcgcaa aacattgcca ttccctgctc tggcgcaata ttcattctta
      121 ttttcgcgtt gattcacgaa ctgttaatta catattcacg gtggcaaaaa atataaaacc
      181 acatttttag tggtagttta tggcggtgaa tttttccaga caaatacaaa aactggagtt
      241 gccatgatga gcgaaagtaa taagcaacag gcagtgaata agttgacaga gattgtcgct
      301 aactttaccg ccatgatttc tacccgaatg cctgatgacg tggtggataa actaaaacag
      361 ctaaaggatg ccgaaacgtc gtcgatgggg aaaattatct accatacgat gttcgacaac
      421 atgcaaaaag cgattgacct gaatcgtcct gcctgtcagg acaccgggga gattatgttc
      481 ttcgttaaag tcggttcccg cttcccactg cttggcgagc tgcaaagcat actcaaacaa
      541 gccgtggaag aggcaaccgt caaagcgcca ctacgtcaca atgcggtaga aatttttgac
      601 gaagtaaaca ccggcaaaaa taccggtagc ggcgtaccgt gggtcacctg ggacatcatc
      661 cccgacaatg acgatgcgga aatcgaagtt tacatggcag gtggcggctg cacgctacct
      721 ggccgctcga aagtgttaat gccgtcagaa ggctacgaag gcgtggtgaa attcgtcttc
      781 gaaaatatct ccaccctcgc cgtaaacgcc tgtccaccgg tactggtggg cgtgggcatc
      841 gccacctcgg tggaaaccgc cgccgtactc tcgcgtaaag ccattttgcg cccgattggc
      901 agccgccatc ccaatccaaa agcggcagaa ctggagctac gcctggaaga aggactcaac
      961 cgtctgggga ttggtccaca agggctgact ggcaacagtt cagtgatggg cgtacatatc
     1021 gaatctgccg cccgccatcc gtcaaccatc ggcgttgctg tctctaccgg ctgctgggcg
     1081 catcgtcgcg gcacactgct ggttcatgcc gatctcacct ttgaaaatct gtctcacacc
     1141 cggagcgcgt tatgaaaaag atcctgacaa ccccgatcaa agctgaagat ctgcaagata
     1201 ttcgcgtcgg cgatgtgatc tacctgaccg gtacgctggt gacctgccgt gacgtttgtc
     1261 accgccgctt gatcgaactg aaacgtccga tcccttacga tctcaacggc aaagcgattt
     1321 tccacgctgg ccccatcgtg cgcaaaaacg gcgataaatg ggagatggtt tccgttggcc
     1381 cgacaaccag tatgcgtatg gaaagttttg aacgtgaatt tatcgagcag accggcgtga
     1441 aactggtggt tggcaaaggc ggaatggggc cgctgaccga agaaggctgc cagaaattca
     1501 aggcgctaca tgtgattttc ccggcaggct gcgcggtgct ggcggcaacc caggtggaag
     1561 agattgaaga agtgcactgg acagagctcg gaatgccgga gtcgctgtgg gtctgccggg
     1621 gcaaagagtt cggcccgctg attgtctcta ttgataccca cggcaacaat ctgatagccg
     1681 aaaacaaaaa gctgttcgcc gaacgccgcg atcccatcgt ggaagagatc tgcgagcacg
     1741 tccattacat caaataaccc tcccggagag gctcgccccc tctccttttt cgcaggcata
     1801 acacgatgaa accttccact gaatggtggc gataccttgc gccgctggcg gtcatcgcca
     1861 ttattgctct aattccggtt cccgcagggc tggagagtca tacctggctc tactttgccg
     1921 tttttactgg cgtgatcgtt ggactgatcc tcgaacccgt gccgggtgcc gtggtggcga
     1981 tggtgggtat ctccatcatc gccatactct ctccctggct gctgttcagc cccgaacagc
     2041 tcgcccagcc aggctttaag ttcaccgcca aatccctctc ctgggcagtt tttggttttt
     2101 ctaattcggt tatctggctc attttcgccg cctttatgtt tggcacaggc tatgaaaaaa
     2161 ccgggcttgg acgccgcatt gcgctgattc tggtgaaaaa gatgggacat cgcacgctgt
     2221 ttctcggcta tgcggtgatg ttctccgagc tgatcctcgc acctgtaaca ccgtccaact
     2281 cggcgcgtgg tgcggggatt atctatccca tcatccgtaa cctgccaccg ctctatcaat
     2341 cacaaccaaa cgacagcagt tcgcgcagca ttggctcgta catcatgtgg atggggattg
     2401 ttgccgactg cgtgaccagc gccattttct tgacggcgat ggcaccaaac ttgctgttaa
     2461 ttggactgat gaaaagcgca tctcacgcca cgctgagttg gggcgactgg ttcctcggga
     2521 tgttgccgct cagtattttg ctggtgctgc tggttccctg gctggcttat gtgctgtacc
     2581 cgccggtact gaagtctggc gatcaggtgc cgcgctgggc agagacggaa ctgcaggcaa
     2641 tgggcccgct ctgttcgcgt gaaaaacgga tgctggggct gatggtaggc gcgctggtgc
     2701 tgtggatttt cggcggtgat tatatcgatg ccgcgatggt cggttacagc gtggtggcac
     2761 tgatgctgct tctgcacatt atcagttggg acgacattgt cagtaataaa gcggcgtgga
     2821 acgttttctt ctggctggcc tcgcttatca ccctcgctac cggactcaac aacactggtt
     2881 ttattagctg gtttggcaaa ctgttagcag gcagcttaag cggttattcg ccaacgatgg
     2941 tgatggtggc gttgattgtg gtgttttatc tgctgcgcta ctttttcgcc agcgccacgg
     3001 cgtatacctc cgccctcgca ccgatgatga ttgccgctgc gctggcgatg ccggaaatcc
     3061 cgctgccggt gttctgccta atggttggcg cggcaattgg tctggggagc attcttacac
     3121 catacgccac cggacccagt ccgatttact acggtagtgg ttatctgcca acggcggatt
     3181 actggcgact gggggcgatt tttgggctga tattcctcgt gttgctggtg attaccggct
     3241 tactgtggat gcccgtggtg ttgctttaag tgaggacggt gccggaaatt gctctccggc
     3301 acccaatagt tttacgcagc cggtaactcc gccagcggcc agcgcggacg cacgctaacg
     3361 ccgagatccg ccgtcgcgcc tgctttaaac cgcaccattc cggcataggc gatcatcgcg
     3421 ccgttatcag tacaaaactc cggacgcgcg tagaacactt cgccgcggcg ttttttcatc
     3481 atttccgcca gcttcgcccg taacgtgcgg ttagcactca cgccgcccgc catgaccagt
     3541 cgcttaaagc ccgtctgatc caacgctcgc ttacacttaa tcatcaacgt atcgaccacc
     3601 gcatcttcaa aggcgcgggc gatatcagca cgcgtctggt cgtcggtgcc gttgtcacga
     3661 atcgtgttcg ccgcaaaggt tttcagacca gaaaagctga aatccagccc cggacggtcg
     3721 gtcatcggac gcgggaaaac aaagcgcccg gcagtaccct gagccgccat tttcgacagt
     3781 aacggtccgc caggataatc cagccccagc agcttcgcgg ttttatcaaa cgcttcaccg
     3841 gcggcatcat cgatagactc gccgagcagc tcgtactgac caatgccagt cacgctgatt
     3901 aactgcgtat gaccgccgga caccagcagc gcgacaaacg gaaattccgg cgggttatct
     3961 tccagcatcg gcgctaacag atgcccttcc atatggtgta ccgggattgc cggaacgttc
     4021 caggcaaacg ccagagaacg ccccacggtt gcgccaacca gcagtgcgcc gactaatcca
     4081 gggcctgcgg tataggccac agcatcaatg tcttttgccg ttaagccaga ctcctttagc
     4141 gccgcctgga tcaacggtac ggttttgcgc acgtgatcgc gggaggccag ttcaggcacg
     4201 acgccgccgt agtcagcgtg caatttcacc tgactataca attggttggc taacaaacct
     4261 ttttcatcgt cgtaaatggc gatgccggtt tcatcgcagg aagtttcaat acccagtaca
     4321 cgcatgactt gttttacctc gctttattac cgcgcagtgt aggaccaatg cgggttgatg
     4381 taaaactttg ttcgcccctg gagaaagcct cgtgtatact cctcaccctt ataaaagtcc
     4441 ctttcaaaaa ggccgcggtg ctttacaaag cagcagcaat tgcagtaaaa ttccgcacca
     4501 ttttgaaata agctggcgtt gatgccagcg gcaaaccgaa ttaatcaaag gtgagaggca
     4561 catgccggta attaaagtac gtgaaaacga gccgttcgac gtagctctgc gtcgcttcaa
     4621 gcgttcctgc gaaaaagcag gtgttctggc ggaagttcgt cgtcgtgagt tctatgaaaa
     4681 accgactacc gaacgtaagc gcgctaaagc ttctgcagtg aaacgtcacg cgaagaaact
     4741 ggctcgcgaa aacgcacgcc gcactcgtct gtactaattc cccgagagcg ttgctctccg
     4801 atcagaccga gttgtagttg taaggccgtg cttccgaaag gaatgcgcgg cttattttcg
     4861 tttatgaatt gctaaaaatc ggggcctatg gctggacgaa tcccacgcgt attcattaat
     4921 gatctactgg cacgcactga catcgtcgat ctgatcgatg cccgtgtgaa gctgaaaaag
     4981 cagggcaaga atttccacgc gtgttgtcca ttccacaacg agaaaacccc gtcattcacc
     5041 gttaacggtg agaaacagtt ttaccactgc tttggatgtg gcgcgcacgg caacgcgatc
     5101 gacttcctga tgaactacga caagcttgag ttcgtcgaaa cggtcgaaga gctggcagca
     5161 atgcacaatc ttgaagtgcc atttgaagca ggcagcggcc ccagccagat cgagcgccat
     5221 cagaggcaaa cgctttatca gttgatggac ggtctgaata cgttttacca acaatcttta
     5281 caacaacctg ttgccacgtc tgcgcgccag tatctggaaa aacgcggatt aagccacgag
     5341 gttatcgctc gctttgcgat tggttttgcg ccccccggct gggacaacgt cctgaagcgg
     5401 tttggcggca atccagaaaa tcgccagtca ttgattgatg cggggatgtt ggtcactaac
     5461 gatcagggac gcagttacga tcgtttccgc gagcgggtga tgttccccat tcgcgataaa
     5521 cgcggtcggg tgattggttt tggcgggcgc gtgctgggca acgatacccc caaatacctg
     5581 aactcgccgg aaacagacat tttccataaa ggccgccagc tttacggtct ttatgaagcg
     5641 cagcaggata acgctgaacc caatcgtctg cttgtggtcg aaggctatat ggacgtggtg
     5701 gcgctggcgc aatacggcat taattacgcc gttgcgtcgt taggtacgtc aaccaccgcc
     5761 gatcacatac aactgttgtt ccgcgcgacc aacaatgtca tttgctgtta tgacggcgac
     5821 cgtgcaggcc gtgatgccgc atggcgagcg ctggaaacgg cgctgcctta catgacagac
     5881 ggccgtcagc tacgctttat gtttttgccg gatggcgaag accctgacac gctggtacga
     5941 aaagaaggta aagaagcgtt tgaagcgcgg atggagcagg cgatgccact ctccgcattt
     6001 ctgtttaaca gcctgatgcc gcaagttgat ctgagtaccc ctgacgggcg cgcacgtttg
     6061 agtacgctgg cactgccatt gatatcgcaa gtgccgggcg aaacgctgcg aatatatctt
     6121 cgtcaggaat taggcaacaa attaggcata cttgatgaca gccagcttga acgattaatg
     6181 ccaaaagcgg cagagagcgg cgtttctcgc cctgttccgc agctaaaacg cacgaccatg
     6241 cgtatactta tagggttgct ggtgcaaaat ccagaattag cgacgttggt cccgccgctt
     6301 gagaatctgg atgaaaataa gctccctgga cttggcttat tcagagaact ggtcaacact
     6361 tgtctctccc agccaggtct gaccaccggg caacttttag agcactatcg tggtacaaat
     6421 aatgctgcca cccttgaaaa actgtcgatg tgggacgata tagcagataa gaatattgct
     6481 gagcaaacct tcaccgactc actcaaccat atgtttgatt cgctgcttga actgcgccag
     6541 gaagagttaa tcgctcgtga gcgcacgcat ggtttaagca acgaagaacg cctggagctc
     6601 tggacattaa accaggagct ggcgaaaaag tgatttaacg gcttaagtgc cgaagagcga
     6661 tcgggaagcc cccgacagcc gcactgagag gcagcggcaa atatataagt acgccctcgt
     6721 aattatcgtt ggcggtaaac aaccgttgga tttcagcgtt aacggctgaa ggacatcggg
     6781 tcaatcgccc aacaccaacc tcatgaaata agtgtggata ccgtcttatg gagcaaaacc
     6841 cgcagtcaca gctgaaactt cttgtcaccc gtggtaagga gcaaggctat ctgacctatg
     6901 ccgaggtcaa tgaccatctg ccggaagata tcgtcgattc agatcagatc gaagacatca
     6961 tccaaatgat caacgacatg ggcattcagg tgatggaaga agcaccggat gccgatgatc
     7021 tgatgctggc tgaaaacacc gcggacgaag atgctgccga agccgccgcg caggtgcttt
     7081 ccagcgtgga atctgaaatc gggcgcacga ctgacccggt acgcatgtac atgcgtgaaa
     7141 tgggcaccgt tgaactgttg acccgcgaag gcgaaattga catcgctaag cgtattgaag
     7201 acgggatcaa ccaggttcaa tgctccgttg ctgaatatcc ggaagcgatc acctatctgc
     7261 tggaacagta cgatcgtgtt gaagcagaag aagcgcgtct gtccgatctg atcaccggct
     7321 ttgttgaccc gaacgcagaa gaagatctgg cacctaccgc cactcacgtc ggttctgagc
     7381 tttcccagga agatctggac gatgacgaag atgaagacga agaagatggc gatgacgaca
     7441 gcgccgatga tgacaacagc atcgacccgg aactggctcg cgaaaaattt gcggaactac
     7501 gcgctcagta cgttgtaacg cgtgacacca tcaaagcgaa aggtcgcagt cacgctgccg
     7561 ctcaggaaga gatcctgaaa ctgtctgaag tattcaaaca gttccgcctg gtgccgaagc
     7621 agtttgacta cctggtcaac agcatgcgcg tcatgatgga ccgcgttcgt acgcaagaac
     7681 gtctgatcat gaagctctgc gttgagcagt gcaaaatgcc gaagaaaaac ttcattaccc
     7741 tgtttaccgg caacgaaacc agcgatacct ggttcaacgc ggcaattgcg atgaacaagc
     7801 cgtggtcgga aaaactgcac gatgtctctg aagaagtgca tcgcgccctg cagaaactgc
     7861 agcagattga agaagaaacc ggcctgacca tcgagcaggt taaagatatc aaccgtcgta
     7921 tgtccatcgg tgaagcgaaa gcccgccgtg cgaagaaaga gatggttgaa gcgaacttac
     7981 gtctggttat ttctatcgcc aagaaataca ccaaccgtgg cttgcagttc cttgacctga
     8041 ttcaggaagg caacatcggt ctgatgaaag cggttgataa attcgaatac cgccgtggtt
     8101 acaagttctc cacctacgca acctggtgga tccgtcaggc gatcacccgt tctatcgcgg
     8161 atcaggcgcg caccatccgt attccggtgc atatgattga gactatcaac aaactcaacc
     8221 gtatttctcg ccagatgctg caagagatgg gccgtgaacc gacgccggaa gaactggctg
     8281 aacgtatgct gatgccggaa gacaagatcc gcaaagtgct gaagatcgcc aaagagccaa
     8341 tctccatgga aacgccgatc ggtgatgatg aagattcgca tctgggggat ttcatcgagg
     8401 ataccaccct cgagctgccg ctggattctg cgaccaccga aagcctgcgt gcggcaacgc
     8461 acgacgtgct ggctggcctg accgcgcgtg aagcgaaagt tctgcgtatg cgtttcggta
     8521 tcgatatgaa caccgaccac acgctggaag aagtgggtaa acagttcgac gttacccgcg
     8581 aacgtatccg tcagatcgaa gcgaaggcgc tgcgcaaact gcgtcacccg agccgttctg
     8641 aagtgttgcg tagcttcctg gacgattaat cggtaggccg gatcaggcgt tacgccgcac
     8701 ccggcactag tccctctgca caaacgccac cttt
//
LOCUS       DAJVUY010000167         8599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.167, whole genome shotgun sequence.
ACCESSION   DAJVUY010000167 DAJVUY010000000
VERSION     DAJVUY010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.167"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..184
                     /locus_tag="OQQ72_003535"
     CDS             <1..184
                     /locus_tag="OQQ72_003535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HCS2013133.1"
                     /translation="EAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ
                     KGEVVGVDDQCKEHKE"
     gene            403..645
                     /locus_tag="OQQ72_003536"
     CDS             403..645
                     /locus_tag="OQQ72_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013134.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ72_003537"
     CDS             complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ72_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HCS2013135.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ72_003538"
     CDS             complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ72_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS2013136.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ72_003539"
     CDS             complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ72_003539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase O subunit beta"
                     /protein_id="HCS2013137.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ72_003540"
     CDS             complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ72_003540"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5911..5913),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS2013138.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVANYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ72_003541"
     CDS             6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ72_003541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HCS2013139.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7679..>8599
                     /locus_tag="OQQ72_003542"
     CDS             7679..>8599
                     /locus_tag="OQQ72_003542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HCS2013140.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2049 a         2176 c         2275 g         2099 t
ORIGIN      
        1 agaggcaatt aaacggctga acaagcttcg gggctggcgt aaggtttcac gatctgcaat
       61 tttacgcgaa gcggttgagc aatatctgga gcggcagcaa tttccggtgc gtaaagcaaa
      121 gggaggcagg caaaaggggg aggtagttgg tgttgatgat cagtgtaagg agcataagga
      181 atgaaaaaaa tttttcattc ttgaatataa aaaaacagat gcccttattc tggtattaat
      241 acaaggctgt tttacttgaa cttataataa ctgcaactgt tacatcgtat ctggaaaacg
      301 cctcgcaaaa ataaaaaatg atgcgtaaat gagctttctt taaagattcg gcaagggtac
      361 ttttctctcc atagattcaa aaatgatatt ggcgagatat ttatgaactc tctggcaggt
      421 atagatatgg gcagaatttt actcgattta tcgaatgagg tgattaagca acttgatgat
      481 ctcgaggtgc agcgtaatct tcctcgtgcg gacctattaa gggaagcggt agatcaatac
      541 ctgataaatc aatcgcaaac agcaagaacc agtgttcctg gcatctggca agggtgtgag
      601 gaagatggtg tcgaatatca gcgtaagctg cgcgaggaat ggtaatggga aaaaatgatg
      661 tcaatcagat tgctgacaac gtgcgcgttg ttcatgccgg atgcggcgtg aacgccttat
      721 ccggcctaca aagtcatgca aattcaatat attgaagttt attggtaggc ctgataagcg
      781 cagcgcatca ggcaatcata cgcttgtcat cagtgacata cccataacct tatcgatgtg
      841 ttggagggaa gaacgaggca aacagacaat tgcggcatga tcttgaatgg gtaacgcgga
      901 atacgagaga tggtgtcgtc acaccctatg agctgtaatc cgggcgacca gcgccacccg
      961 gaaaacgtca gagattactc cccttcaccc ggaaacagga acgggttgat ggaactgcgg
     1021 gcatagcctt cttgctccat tcgcgcgtcc agtaccagag aagcgaggtc atctgccacg
     1081 gcttcaactt tcggttcttt ttcctgataa agaatcttca ggtaagtgcc gcagtcatcg
     1141 cagctttcgg ctttaatcgc ggcctgttcg tcatccagcg accagtaatg cagtttgccg
     1201 ctctgttcac agttgctgca ttttacgcgc actacgtgcc attcggtttc acacaggttg
     1261 cagtgcaggt aacgcagacc ctgagtggtg ccaatttgca ccatgctgga caccggcata
     1321 gaaccacaaa ccgggcaata ttgacgttgc tcgccgtatt cagcgcgggc tttgccgggg
     1381 atcagattgg ccatctgcgc ccagtagagc gacagtgcag cccagataaa cggcgcttta
     1441 tcgctgctga cggatgagaa atcagaggca aacagtgcgc tggccatatc ttccagctcc
     1501 tgagtcgatg ccttctccag attctcaatc actgccagcg ccgggccgct catttcaggt
     1561 ttcagctcag caatcagcgc catcagcagc ttttgccagt gcttatcacg cggcagaacg
     1621 tgaatatcca gcgggggctt gccctgtgcg ctggcttctt taatgcgcgc ggtcagatcc
     1681 atctccagcg gatggtcgta cagcaccact tcctgggcgt gggcgataag cgcagcaaag
     1741 cgcaggtaat catccagcgg attattttct gccagctcgc gcagacgctc ggcgcggcgg
     1801 ttgtataaat tcttgagccg agggaacaat aacggcggaa tcatatccgc cgtacgtttc
     1861 tcgctcgaac ccagctcatc ttgcgggatt atgcgaatac tcattcagct ttcttttccg
     1921 ttgtcttgcg gacctcacgg taccagcgcg ggtgatgttt cttcgcccag gcgctggtaa
     1981 cccatccttc caccatggcg gtaatcgtgc ctttcaccca aagggcggcg tagatatgca
     2041 ccatgataac cacaattaac gccactgcgg caaatgaatg cagcattaac gcgaatcgga
     2101 tcaccgggat tgagaaagca ggcgcaaaat aaggacgcca gataatcacg ccgctcacca
     2161 gcagcagaac caggaaaata atcgccgccc agaaaacgca tttctgaccg aagttataac
     2221 gcccggtgtc acctacttcc tcgttgacga cgatcttacg aatattcttc gcccaaaaga
     2281 tatcatcccg attgattagg ttgtgatgcc agtaacggaa aaacatgatg atgaacgagg
     2341 caaacataac cacgccgaca aacgggtgca gaattcgcgc cagctgcggt gtgcccatga
     2401 tttgcatcaa ccagttgaag gacgggaaca aaaagcccag cccgctcacc gccgctagga
     2461 tgaagcagaa ggcggtgatc cagtggttga tacgttccgg cgcggtgtag cgcacgatgg
     2521 tgtcacgtcg tttcatttgc gctcctcgtc tttctcttcg tgcagattat tctcttcctc
     2581 atccgcacgg ttcggaccga cacccacgta gtggaagata ctggctgcga aggtagccgc
     2641 aaagccaaca gctgcgagcg gtttccagat gcctttccag aatttcacgg tttcgctgat
     2701 ttccgggttc tccggcaagc catgatacag atttggcttg tcagcatggt gcagcacgta
     2761 cataacgtgt gtaccaccga cgcctgccgg atcgtacagg cccgcattgt cgtaaccgcg
     2821 ggttttcagc tccgccacgc gctcgctcgc cagcgttttc atcgactctt tcgtaccgaa
     2881 gtgaatcgcg cccgttgggc aggtcttcac gcaggctggt tcttgcccaa ccaccacgcg
     2941 gtcaacgcac agcgtacatt tgtagacgcg gttgtcttcc gggttgaggc gcggaatgtc
     3001 gaacggacag cccgcaatgc aataaccgca gccaatgcac tgctcggact ggaagtcgac
     3061 gataccgttg gcatactgaa taattgcacc ttccgccggg cacgctttca gacagcctgg
     3121 atcggaacag tgcatacagc cgtctttgcg gatcagccat tccagtttgt cgttctgctc
     3181 cacttccgag aagcgcatca ccgtccacga tttggcactt aaatcattgg ggttgtcgta
     3241 caccccaatg ttattgccga cggtatcgcg aatgtcgttc cactctgaac acgccacctg
     3301 acaggcttta cagccgatac aggtggtgac gtcgatgagt ttcgccactt cttcctggaa
     3361 gtcccgcgcc tgaggcgcgg gggtcagacc gttagtcgcg gaacgacgaa tgatatcttg
     3421 agattgataa gccatatgtc gtctccgtta caccttttcc acattcacaa ggaaggactt
     3481 aaactccggc gtctgcgtgt tcgcatcacc aacgaatggc gttaaagtat tggcaataaa
     3541 gcctttttta gctacgcctt catagcccca gtgaatcgga ataccgatgg tatcgatatc
     3601 tttgccgttc gctttcagcg tgcgaatacg tttggtcacc accgctttgg ctttgatata
     3661 gccacggttg gaggagactt tcacggtatc gccctgggca atgccaagtt tattcgccag
     3721 cgactccccg atttccacaa actgctctgg ctgcaaaatc gcgttcaaca gcgcgtgttt
     3781 ggtccagtag tggaagtgct cggtcagacg ataggtggtt ccgacatacg ggaacttatc
     3841 ggctttaccc aatgcttcgg cgtcgtcttt aaagatacgt gcagccgggt tcgagataac
     3901 gtttggatgc agcgggttag ttcccagcgg cgtttcaaac ggctcgtagt gttccgggaa
     3961 cggaccttcc gccatcttat cgagggcaaa cagacgcccc atgccttcct gctgcatgat
     4021 aaacggcccg acgccgctac ccggaggcgc tgcgctgtag tccggaatat cccagccggt
     4081 ccacttagtg ccgtcccatt tcagcaactg acgcttcgga tcccacgggt taccctgcgg
     4141 atctgcggag gcgcggttat acagaatgcg gcggttaagc ggccatgccc atgcccagcc
     4201 cagcgtgtta ccgaggccag acggatcggc gttatcacga cgcgccatct ggttgccttc
     4261 cggcgtccag ctaccggcga aaatccagca gccacaggag gttgtaccgt catcgcgcaa
     4321 ttgggcgaac gagctaagtt gttggccttt cttgacgata accgcaccgg ttgccggatc
     4381 ggtaatatcg gccagcgcct taccgttgct ctccatcgct acttcttccg acttcggctc
     4441 atgcggaatg gcgtagttcc aggtcatgtt cagcacctga tccgggttcg cgccaccctg
     4501 ttcggcatac atcttgcgca agcgcaggaa gataccggag aggatctcac cgtcagtcag
     4561 cgcaatcccc ggggcgtccg cacctttcca gtgccactgc aaccagcgac ctgagttaac
     4621 gattgaaccg ttctcttctg cgaagcaggt cgatggcaga cggaacactt cggtctggat
     4681 cttcgacgag tcaacttcgt tcagctcacc gtggttctgc cagaagttag aggtttcagt
     4741 gttcagcggg tcgatggtga cgaggaactt cagtttcgac agacaaccga tcactttgtt
     4801 tttgttcggg aatgaggcaa cagggttaaa accctggcag atatagccat tgaccttgcc
     4861 ctctttcatc atctcgaagt attgcaggac gtcgtagcct ttatcccact tcggcaacca
     4921 gtcaaagccc cagctatttt ccgccgtcgc tttatcacca aagaaggcct tcatcataga
     4981 gacgaagaat ttcgggtagt tgccccagta gtttacctgg ccttccagca gcggttttgg
     5041 cgtgttggcg gtaaggtagg tttgcagatc ggtctgcttc tcgcttggca gcgtcatgta
     5101 acctggcagg ctctgcgaca gcagccccag gtccgtcagc ccctgaatat tggagtgacc
     5161 gcgcagggcg ttaacgccgc cgcctgccat ccccatattg ccgagcagca gctggatcat
     5221 cgccatcgta cgaatgtttt gcgcaccaac ggagtgttgc gtccagccga gggcatacag
     5281 gaacgaggca gttttatcgt gagcactggt ttctgcgatg tattcgcaga ctttcaggaa
     5341 cgcgtctttt ggcgtaccac agatgttttc aaccacatct ggcgtgtagc gggaaacgtg
     5401 ctgtttcagc aagttccaca cgcagcgcgg atgttgcagc gtggtatcgc gtttggcgaa
     5461 gccgttttcg tccagttcgt aagtccagga ggatttatcg tacttgcgtt tttccgcgtc
     5521 atagccggtg aaaaggccat cttcaaagcc gtaatcctca cgcacgatca ggctggcgtt
     5581 ggtataggct tcggtgtatt cgcggttgaa tttttcattg ttcagcaggt acagcaatac
     5641 gcctgacagg aaagcaatgt cagtaccgga acgaataggg gcatagtagt tagctaccgc
     5701 cgccgtacgc gtaaagcgag gatcgatcac aatcagcttc gcgccgttgt gaattttggc
     5761 ttccatcgcc cagcggaacc cgaccgggtg agcttcagcg gcgttaccgc ccatcaccac
     5821 gacgaggttg gcgttcttga tgtcgaccca gtggttggtc atcgcaccgc gaccaaatgt
     5881 tggagcaaga cttgctaccg ttggtccgtg tcagacacgc gcctggttgt cgaccgcgag
     5941 catacccagc gcgcgggaga atttttgcgt taaatagccg gtttcgttac tcgacgcgga
     6001 agcacacagc atcccggtgg agagccagcg gttaacagtc acgccttcgg cgttttgcgc
     6061 aatgtagtta gcatcgcggt cttctttcat cagtttggcg atgcgatcaa acgcctcttc
     6121 ccaactgatt tgctgccatt tatcagaacc tggcgcacgg tattccggaa acttcagacg
     6181 gctttcggag tggatgaaat ccaccaggcc agcgcctttc ggacaaagtg caccgcggtt
     6241 gaccgggtga tccggatcgc cttcgatatg gaagatagat gctttggcgt tttttgctcc
     6301 gtcaccgagg ctgtacatca acagcccaca gcctacggaa caataggtgc aggtattacg
     6361 ggtttcgcgg gtgcgcagca gtttatactg ccgggtttcc gcgagtgcta cgctgggtgc
     6421 aaaacctagt gccgctgccg tggtgcctgc cataccgcca gcgcagatct taaagaactg
     6481 ccttctgctg acctgcatgg attgctcctt gtttcgacat tgtcacgtcc catttacatt
     6541 cgcttgctgc gtgtgcaggg agtgggagtt atttttcttt gcggaagggg ccgcaaaggt
     6601 ccagaattgg ctcgatttcc ctccatccag gaagggtttg taacagaata ccataatgtt
     6661 ggtgtgtgtg ttcttatctg gttaagagaa agtgaaaaaa acacagcgaa aagaaatcga
     6721 aaatgtgaca aatatcacag gtgttcgtca aattgagtta tggcggcgtg atgatttaca
     6781 acacccacgg ttagatgagg tcgcggaaga agttcccgtt gcgctggtct acaacggcat
     6841 ttcgcatgtg gtgatgatgg cgtcgcccaa agaccttgag tactttgcgc tcggtttttc
     6901 gctttccgag gggattatcg aaagtccgcg cgatatcttc ggcatggatg tcgttccttc
     6961 ctgtaatggt cttgaagtac aaattgagct ttccagccgc cgctttatgg ggttgaagga
     7021 gcgccgccgg gcgctggcgg gacgtacggg ctgtggcgta tgcggcgtgg agcaacttaa
     7081 tgacatcgga aaaccggtgc agccgctacc gttcacccag acgtttgatc tcaacaaact
     7141 ggatgatgca ttacgtcatc tcaacgattt tcagccagtg gggcaactga ctggttgtac
     7201 tcacgccgct gcctggatgt tgccatctgg cgaactggtc ggcgggcatg aagacgtggg
     7261 gcgccatgtg gcgctggaca aactgttagg ccgccggtca caagaagggg aaagctggca
     7321 gcaaggtgcg gtactggttt ccagtcgtgc cagttatgaa atggtgcaaa agtcggcgat
     7381 gtgcggcgta gagattttgt ttgcggtgtc tgccgcgacc acgcttgctg tagaagtggc
     7441 tgagcgctgt aatctgacac tggtaggttt ttgtaaaccg ggtcgggcaa cggtttatac
     7501 ccatccgcag cgtttgagca attaattaaa ataagtcctg cgatatatat taaattgcag
     7561 gacttattca tttcgtgaat tttattattt ttatttataa ataaaacgcg tgtagtggcg
     7621 ttttcttttt tcatttatta tgttcactct cttatctata tatttataag gcaattaaat
     7681 gaaaaggaat ttattatctt ccgctattat agtcgccatc atggccctcg gtctgacggg
     7741 ttgtgatgat aaaaaagccg aaacagaaac gcccccgcct gccaatagtc aacctgccgc
     7801 accagctcct gaagctcccg ttgcaaaagc agaagctaaa cctgaaacac ctgcgcaacc
     7861 ggtggtcgat gaacaagcgg ttttcgacga aaaaatggat gtctatatca agtgctataa
     7921 caagttacag atccctgtac agcgcagtct ggcgcgttat gttgactggc tgaaagattt
     7981 taaacagggg cctaccggtg aagagcgtac tgtttatggc atctacggca ttagtgaatc
     8041 caacctcgct gagtgtgaaa aaggcgtaaa aagtgctgtg gcgttaacgc ctgcgctgca
     8101 accaattgat ggcgtggcgg tgagttatat cgatgctgcc gtggcgttgg gtaataccat
     8161 taacgaaatg gataaatatt acacccagga aaattataaa gacgatgcgt ttgcgaaagg
     8221 gaaaacgctg caccagacat tcttaaaaaa tctggaagcc tttgaacctg tagcagaatc
     8281 ttatcatgcg gcgattcagg aaattaacga taagcgccag cttgcggaac tgaaaaatat
     8341 tgaagaaaga gaagggaaaa tattccacta ctattctctg gcagtcatga tttcagcgaa
     8401 acaaattaat aacctgatat cgcaagagaa gtttgatgtt gatgcggcaa tgaagaaagt
     8461 gtctgaactg gaaacgctgg tggcgcaggc caaagaagcg gataaaggcg gcatgaattt
     8521 ctcgtttatt aattcggcag gccagtatca actcgaggct aaaaaatacg ttcgccgcat
     8581 cagagataaa gtcccgtac
//
LOCUS       DAJVUY010000168         8444 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.169, whole genome shotgun sequence.
ACCESSION   DAJVUY010000168 DAJVUY010000000
VERSION     DAJVUY010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.169"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..200
                     /gene="csgC"
                     /locus_tag="OQQ72_003543"
     CDS             <1..200
                     /gene="csgC"
                     /locus_tag="OQQ72_003543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS2013141.1"
                     /translation="LREGGSGQSQTKQEKTLSLPANQPIALTKLSLNISPEDRVKIVV
                     TVSDGQALHLSQQWPPSSEKS"
     gene            321..632
                     /locus_tag="OQQ72_003544"
     CDS             321..632
                     /locus_tag="OQQ72_003544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS2013142.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            728..1261
                     /gene="ymdB"
                     /locus_tag="OQQ72_003545"
     CDS             728..1261
                     /gene="ymdB"
                     /locus_tag="OQQ72_003545"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HCS2013143.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1203..2684
                     /gene="clsC"
                     /locus_tag="OQQ72_003546"
     CDS             1203..2684
                     /gene="clsC"
                     /locus_tag="OQQ72_003546"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsC"
                     /protein_id="HCS2013144.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEIILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2692..3849)
                     /gene="mdoC"
                     /locus_tag="OQQ72_003547"
     CDS             complement(2692..3849)
                     /gene="mdoC"
                     /locus_tag="OQQ72_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HCS2013145.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4243..5778
                     /gene="mdoG"
                     /locus_tag="OQQ72_003548"
     CDS             4243..5778
                     /gene="mdoG"
                     /locus_tag="OQQ72_003548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HCS2013146.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGGAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5771..8314
                     /gene="mdoH"
                     /locus_tag="OQQ72_003549"
     CDS             5771..8314
                     /gene="mdoH"
                     /locus_tag="OQQ72_003549"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HCS2013147.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKHWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2132 a         2002 c         2209 g         2101 t
ORIGIN      
        1 ccctgcgcga aggcggttca gggcaaagtc agacgaagca agaaaagacc ctctcattgc
       61 ctgctaatca acctattgct ttgacgaagt tgagtttaaa tatttccccg gaagatcggg
      121 tgaaaatagt tgttactgtt tctgatggac aggcacttca tttatcacaa caatggccgc
      181 cctcttcaga aaagtcttaa tttgttgaaa tgtcgagcat aagatgaatc tggagagaat
      241 ggtctgctgc gaatcagcca acctgaaagt atggataaca caaccctcaa ggatgactaa
      301 tcattgagga aatagaataa atgttcagac cttttttaaa ctctcttatg ctcggcagtt
      361 tgttttttcc ttttattgcc atcgcaggaa gcaccgcgca agggggcgtg atccattttt
      421 atggccaaat tgtggaaccg gcatgtgacg tcagcaccca gtcatcaccc gtagaaatga
      481 actgcccaca gaatggttct gttccgggaa aaacctattc cagcaaagcg ttaatgagcg
      541 gcaatgtcaa aaacgcgcaa gtagcctcag taaaagtgca gtatattgat aaacagaaaa
      601 agctggctgt aatgaacatc gaatataact aagtttctga acaacgcacg ttgctgagta
      661 gaaaaatgcg atttaaccaa aaagcctgct gtacacttaa gaaacaagaa ggtgttaagg
      721 aggcgttatg aaaacgcgta ttcatgttgt gcagggtgat attaccaaac tggccgttga
      781 tgtgattgtg aatgcggcta atccgtcatt aatgggaggc ggcggcgtcg atggggccat
      841 tcatcgcgca gcgggtccgg ccctgctgga tgcctgttta aaagtcaggc aacagcaggg
      901 cgattgccct acggggcatg ccgttattac gcttgcaggc gatcttcccg ctaaagccgt
      961 agtacacacc gtcgggccag tctggcgtgg tggtgaacaa aacgaagacc agcttttgca
     1021 ggatgcctat ctcaatagtc tgcgactggt ggcggcaaac agctatacgt cagtggcatt
     1081 tcctgcaatc agtactgggg tttatggtta ccctcgtgcg gcagcggctg aaatcgcagt
     1141 aaaaaccgtt tcagaattta ttacccgtca cgctttaccc gaacaggtat actttgtctg
     1201 ttatgatgaa gaaaacgccc acctctacga aagactcctt acccaacaag gagatgaatg
     1261 atttgccccg gctggcgagc gcggtgctgc cactgtgttc gcaacatccc ggtcagtgtg
     1321 gtcttttccc tctggagaaa agtctggatg cgtttgccgc ccggtatcgt ctggccgaaa
     1381 tggcagagca tacgctggat gttcagtatt acatctggca ggacgatatg tcgggtcggt
     1441 tactgttttc cgccctgtta gccgcagcaa agcgtggcgt tcgcgtccgt ttgttgctgg
     1501 acgacaacaa tacgcccgga cttgacgata ttttacgctt gcttgacagc catccccgca
     1561 ttgaagtccg gctttttaat cctttctcgt ttcgcttgct gcgtccgctt ggttatatca
     1621 ccgacttttc ccgtctcaat cgccgtatgc acaataaaag tttcactgtc gatggcgtgg
     1681 ttaccttggt gggaggacga aatattggtg atgcctattt tggggcaggg gaagagccac
     1741 ttttttcgga tttagatgtt atggcaatag gacccgtggt agaggacgtt gccgatgatt
     1801 tcgcccgcta ctggtattgc aaatcggttt cacccttaca gcaggtgctg gatgtcccgg
     1861 aaggtgaaat ggcggatcgc atcgagttac ccgcctcctg gcataacgat gccatgacgc
     1921 atcgttactt acgccaaatg gaatccagtc cgtttataaa tcatctggtt gatggaacgt
     1981 tgccgcttat ctgggcgaaa acacgtttat taagtgatga tccggcgaaa ggggagggca
     2041 aggcaaaacg gcattcactg ttaccgcagc gcctgttcga tatcatgggc tcacccagtg
     2101 aacgcatcga tattatctct tcctattttg taccgacacg cgcaggtgtg gcgcaactct
     2161 tacggatggt gagaaaaggg gtaaagattg cgatcctaac caattctctt gccgctaacg
     2221 atgttgctgt cgtccatgcc ggatacgcgc gctggcgcaa aaaattgctc cgctatggcg
     2281 tggaattata tgaactcaag ccgacgcgtg aacaaagtag tacgttacac gatcgcggca
     2341 taaccggtaa ttccggtgcc agcctgcatg ctaaaacctt tagcatcgat ggtaaaacgg
     2401 tgtttatcgg ctctttcaat ttcgatccac gttcgacatt gctcaatact gaaatgggct
     2461 tcgtgataga gagcgaaacg ctggcacagt taattgataa acgctttata cagagccagt
     2521 atgatgcggc ctggcagctc cgtctggaca ggtggggacg gatcaactgg gttgatcgtc
     2581 atgcaaagaa agagattatt ctcaaaaaag aacccgccac cagtttctgg aagcgggtta
     2641 tggtcagact ggcgtcgata ttgcccgtgg aatggttatt gtaaatgtgg cttaacgggc
     2701 tggtgcttta tcgttctcac gcttaacaac cggtttacca gaaaacaaaa acttcagtaa
     2761 cgggatgcgt aaatgaattt catacagaat tatcgcaatc cctactacga atatcaggcc
     2821 acagagaaaa ccaagccagt tggaggtgat gtgcggtgta atgtatgcgc cgaaaaacag
     2881 cgttaacggg tggtgaacca gatagataaa tagcgatgcg ttaacaaagt aagtcacccg
     2941 cgctgactgg aagttaagca aacggtggcc aaaggagaag accacattca ccatccacag
     3001 accgaggacc atggtgatca ccgactcggt ttcgtacatc caggcatcgc cactgccata
     3061 gcgttggttg agtaaataag cgacaaatgc caatgctgct gcaagggtac agccacgaga
     3121 cggcgtggta aacaaggctt taagatgagg gaaaatgaaa gccagtgcac cgaggataaa
     3181 gaacggcaaa taaaatagcg tttgcatgac aataaaattg aacatgccat tactcagaat
     3241 gggcggatac acaataaaaa tcgttcttct tattaccgca tagccgatgc cgaggcataa
     3301 aaaaatcacc gatagtttta ccatcgagaa ttttttattc gttttatcag aattttctaa
     3361 attatttctg atgcgtttaa atatccatac gcacagcgtc gtcatgacta ctaacaccag
     3421 taaaaaccac aggtgtgata ttaattccca ggccaacgta ttatatttgt catacaatga
     3481 cagcccaggc caactttccg ctttcccttt gacgtattgc agcataataa attgcggcaa
     3541 tgtcagtaag gggatggctg ttaacatcgg gatacctaca cgttcgacac gtactttcca
     3601 ccattttttc aagggatagc gtaaaaaaag catgtaggaa aagtagccgg atataacgaa
     3661 aaataccagc atgcggaacg agtggatgaa gtcattaaaa agggtcagcc acaatgacgg
     3721 ttcggcgcta ttcacatgcc atgtatggct cgaatagatt aaagaaatat gaaaagggat
     3781 ccctaacaac atcagccagg cgcggatgga gtcgaggaaa tattcacgtt gcgcgggtac
     3841 tggattcata tatggttaac taatctcgga tttttcgtct tatccctgtc gggttatgcc
     3901 tttaggcttg ttgccatagc gacaccgacc tgaccgcgcc aggcgcaggc ttcaaggttt
     3961 ttatgcatag cataatcgct accactaacc agaatggaag cgtctgtaag acggttgata
     4021 aataaaattg ctggcaaacc ctacacgaag tcgatgcttc tgtctttagg agaagcacgg
     4081 aaagtgaaaa cggttgcaat caggtgctta atccatgagc cagcgtgctg aacgataccg
     4141 ggattctgtt gtcggaatgg ctggttatcc attaaaatgg atcggatcga tataagcaca
     4201 caaaggggga agtgcttact aattatgaaa cataaactac aaatgatgaa aatgcgttgg
     4261 ttgagtgctg cagtaatgtt aaccctgtat acatcttcaa gctgggcttt cagtattgat
     4321 gatgtcgcaa agcaagctca atccttagcc gggaaaggct atgaggcgcc caaaagcaac
     4381 ttgccctccg ttttccgcga tatgaaatac gcggactatc agcagatcca gtttaatcat
     4441 gacaaagcgt actggaacaa tctgaagacc ccattcaaac tcgagttcta ccatcagggt
     4501 atgtacttcg ataccccggt caaaataaat gaagtgactg ccaccgcagt caaacgaatc
     4561 aaatacagcc cggattattt cactttcggc gatgttcagc atgacaaaga cacggtaaaa
     4621 gaccttggtt ttgccggttt taaagtgctt tacccgatca acagcaaaga taaaaacgat
     4681 gaaatcgtca gcatgctcgg ggccagctat ttccgcgtga ttggtgcagg tcaggtttat
     4741 ggcctttctg cccgcggcct ggcaattgat accgccttgc catcgggtga agaatttcca
     4801 cgcttcaaag agttctggat cgagcgtcca aaaccgactg ataaacgttt aaccatttat
     4861 gcattgcttg actcgccgcg cgcgacaggt gcttacaaat tcgtggttat gccagggcgt
     4921 gacacggttg tggatgtgca gtcgaaaatc tatctgcgcg ataaagtcgg caaactgggg
     4981 ggtgcaccgt taaccagtat gttcctgttt gggccgaacc aaccgtcgcc tgcaaataac
     5041 tatcgtccgg agttgcacga ctctaacggt ctctctatcc atgccggtaa tggcgaatgg
     5101 atctggcgtc cgttgaataa cccgaaacat ttagcggtta gcagcttctc gatggagaac
     5161 ccgcaaggct tcggtctgtt gcagcgcggt cgtgatttct cccgctttga agatctcgat
     5221 gatcgttacg atcttcgtcc aagcgcatgg gtgactccga aaggggagtg gggtaaaggc
     5281 agcgttgagc tggtggaaat tccaaccaac gatgaaacca acgataacat cgtcgcttac
     5341 tggacgccgg atcagctgcc ggagccgggt aaagagatga actttaaata caccatcacc
     5401 ttcagccgtg atgaagacaa actgcatgcg ccagataacg catgggtgca acaaacgcgt
     5461 cgttcaacgg gggatgtgaa gcagtcgaac ctgattcgcc agcctgacgg tactatcgcc
     5521 tttgtggtcg attttaccgg cgcagagatg aaaaaactgc cagaggatac cccggtcaca
     5581 gcgcaaacca gcattggtga taatggtgag atagttgaaa gcacggtgcg ctataacccg
     5641 gttaccaaag gctggcgtct ggtgatgcgt gtgaaagtga aagatgccaa gaaaaccact
     5701 gaaatgcgtg ctgcgctggt gaatgccgat cagacgttga gtgaaacctg gagctaccag
     5761 ttacctgcca atgaataaga caactgagta cattgacgca atgcccatcg ccgcaagcga
     5821 gaaagcggca ttgccgaaga ctgatatccg cgccgtacat caggcgctgg atgccgaaca
     5881 ccgcacctgg gcgcgggagg atgattcccc gcaaggctcg gtaaaggcgc gtctggaaca
     5941 agcctggcca gattcacttg ctgatggaca gttaattaaa gacgacgaag ggcgcgatca
     6001 gctgaaggcg atgccagaag caaaacgctc ctcgatgttt cccgacccgt ggcgtaccaa
     6061 cccggtaggc cgtttctggg atcgcctgcg tggacgcgat gtcacgccgc gctatctggc
     6121 tcgtttgacc aaagaagagc aggagagcga gcaaaagtgg cgtaccgtcg gtaccatccg
     6181 ccgttacatt ctgttgatcc tgacgctcgc gcaaactgtc gtcgcgacct ggtatatgaa
     6241 gaccattctt ccttatcagg gttgggcgct gattaatcct atggatatgg ttggtcagga
     6301 tttgtgggtt tcctttatgc agcttctgcc ttatatgctg caaaccggta tcctgatcct
     6361 ctttgcggta ctgttctgtt gggtgtccgc cggattctgg acggcgttaa tgggcttcct
     6421 gcaactgctt attggtcgcg ataaatacag tatatctgcg tcaacagttg gcgatgaacc
     6481 attaaacccg gagcatcgca cggcgttgat catgcctatc tgtaacgaag acgtgaaccg
     6541 tgtttttgct ggcctgcgtg caacgtggga atcagtaaaa gccaccggga atgccaaaca
     6601 ctttgatgtc tacattctta gtgacagtta taacccggat atctgcgtcg cagagcaaaa
     6661 agcctggatg gagcttatcg ctgaagtcgg tggcgaaggt cagattttct atcgccgccg
     6721 ccgtcgccgc gtgaagcgta aaagcggtaa tatcgatgac ttctgccgtc gctggggcag
     6781 ccagtacagc tacatggtgg tgctggatgc tgactcggta atgaccggtg attgtttgtg
     6841 cgggctggtg cgcctgatgg aagccaaccc gaacgccggg atcattcagt cgtcgccgaa
     6901 agcgtccggt atggatacgc tgtatgcgcg ctgtcagcag ttcgcgaccc gcgtgtatgg
     6961 gccactgttt acagccggtt tgcacttctg gcaacttggc gagtcgcact actggggaca
     7021 taacgcgatt atccgcgtga aaccgtttat cgagcactgc gcactggctc cgctgccggg
     7081 cgaaggttcc tttgccggtt caatcctgtc acatgacttt gtagaagcgg cgttgatgcg
     7141 ccgtgcaggt tggggggtct ggattgctta cgatctcccg ggttcttatg aagaattacc
     7201 gcctaacttg cttgatgagc taaaacgtga ccgccgctgg tgccacggta acctgatgaa
     7261 cttccgtctg ttcctggtga agggtatgca cccggttcac cgtgcggtgt tcctgacggg
     7321 cgtgatgtct tatctctccg ctccgctgtg gtttatgttc ctcgcgctct ctactgcatt
     7381 gcaggtagta catgcgttga ccgaaccgca atacttcctg caaccacggc agttgttccc
     7441 ggtgtggccg cagtggcgtc ctgagctggc gattgcactt tttgcttcga ctatggtgct
     7501 gttgttcctg ccgaagttat tgagcatttt gcttatctgg tgcaaaggaa cgaaagaata
     7561 cggcggcttc tggcgcgtta cattatcgtt gctactggaa gtgctttttt ccgtgctgct
     7621 ggctccggta cgcatgctgt tccatacggt cttcgttgtc agcgcgttcc ttggctggga
     7681 agtggtgtgg aattcaccgc agcgtgatga tgactccact tcctggggtg aagcgttcaa
     7741 acgccacggc tcacagctgc tgttagggtt agtgtgggct gttgggatgg cgtggctgga
     7801 tctgcgtttc ctgttctggc tggcaccgat tgtcttctcg ttgatcctgt caccgtttgt
     7861 ttcggtgatt tccagccgtg ccaccgttgg tctgcgaacc aaacactgga aactgttcct
     7921 gatcccggaa gagtattcac cgccgcaggt gctggttgat accgatcgct tccttgagat
     7981 gaatcgtcaa cgctcccttg atgatggttt tatgcacgcg gtgtttaacc cgtcatttaa
     8041 cgctctggca accgcaatgg cgaccgcgcg tcaccgcgcc agtaaggtgc tggaaatcgc
     8101 ccgtgaccgc cacgttgaac aggcgcttaa cgagacgcca gagaagctga atcgcgatcg
     8161 tcgcctggtg ctgctaagcg atccggtgac gatggcccgt ctgcatttcc gtgtctggaa
     8221 ttccccggag agatattctt catgggtgag ttattacgaa gggataaagc tcaatccact
     8281 ggcattgcgt aaaccggatg cggcttcgca ataaaaacgt agttgcctga tgcgctacgc
     8341 ttatcaggcc tacatcgttc ctgcaattta ttgattttgc aagattttgt aggttgggta
     8401 aggcgttcac gccgcatccg gcaaaaacaa cgagccaata aaaa
//
LOCUS       DAJVUY010000169         8316 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.170, whole genome shotgun sequence.
ACCESSION   DAJVUY010000169 DAJVUY010000000
VERSION     DAJVUY010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8316
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.170"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(312..890)
                     /gene="mocA"
                     /locus_tag="OQQ72_003550"
     CDS             complement(312..890)
                     /gene="mocA"
                     /locus_tag="OQQ72_003550"
                     /EC_number="2.7.7.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor cytidylyltransferase"
                     /protein_id="HCS2013148.1"
                     /translation="MSAIDCIITAAGLSSRMGQWKMMLPWQQGTILDTSIKNALQFCS
                     RIILVTGYRGNELHERYVNQSNITIIHNPDYAQGLLTSVKAAVPAVQTEHCFLTHGDM
                     PTLTIDIFRKIWSLRNDGAILPLHNGIPGHPILVSKPCLMQAIKRPNITNMRQALLMG
                     AHYSVEVENAEIILDIDTPDDFITVQKRYTKI"
     gene            993..1763
                     /gene="yqeC"
                     /locus_tag="OQQ72_003551"
     CDS             993..1763
                     /gene="yqeC"
                     /locus_tag="OQQ72_003551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311776.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium-dependent hydroxylase
                     accessory protein YqeC"
                     /protein_id="HCS2013149.1"
                     /translation="MKSIVDPSALFIDLGAQKRPTVISVVGAGGKTSLLFWLAELLQA
                     SGRRVLITTTTHMFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFT
                     PEAIDALVQRPECDVILIEADGSRAMPLKAPDEHEPCIPKSSCCVIAVMGGHILGAKV
                     STENVHRWSQFADITGLTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQC
                     ENAIAQSELLQPLQQHDVEAIWLGDIQEHPAIARRFVN"
     gene            1811..3436
                     /locus_tag="OQQ72_003552"
     CDS             1811..3436
                     /locus_tag="OQQ72_003552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF2563 family selenium-dependent molybdenum
                     hydroxylase system protein"
                     /protein_id="HCS2013150.1"
                     /translation="MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSI
                     VGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGM
                     RPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAV
                     EALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEE
                     HIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGA
                     GDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSA
                     EAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFT
                     AGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVK
                     LGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSV
                     SDKARAIGGGVLEALMMLMHQGVKATKEVLEVA"
     gene            complement(3477..4409)
                     /gene="arcC"
                     /locus_tag="OQQ72_003553"
     CDS             complement(3477..4409)
                     /gene="arcC"
                     /locus_tag="OQQ72_003553"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS2013151.1"
                     /translation="MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIV
                     THGNGPQVGMINQAFEAAAKTEAHSPMLPMSVCVALSQGYIGYDLQNVLREELLSRGI
                     NKPVATLVTQVEVDANDPAFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVV
                     ASPKPVDIIEKETVKALVDAGQVVITVGGGRIPVIREGNHLRGASAVIDKDWASARLA
                     EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAA
                     ASFARSRAGREALITVLSKAKEGIEGKTGTVICQ"
     gene            complement(4457..5842)
                     /gene="hyuA"
                     /locus_tag="OQQ72_003554"
     CDS             complement(4457..5842)
                     /gene="hyuA"
                     /locus_tag="OQQ72_003554"
                     /EC_number="3.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311773.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-phenylhydantoinase"
                     /protein_id="HCS2013152.1"
                     /translation="MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEI
                     DATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCR
                     LRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMMVEEGLSSFKLYLTYQYKL
                     NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAE
                     AIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD
                     TEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCP
                     NGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVV
                     IIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRF
                     LRRKPFVPPVL"
     gene            complement(5895..6935)
                     /locus_tag="OQQ72_003555"
     CDS             complement(5895..6935)
                     /locus_tag="OQQ72_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgeY family selenium metabolism-linked
                     hydrolase"
                     /protein_id="HCS2013153.1"
                     /translation="MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHR
                     IKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGME
                     TDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
                     EQSGIRPEFVVSTEPTDCQIYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPIL
                     GELQELSQRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGAL
                     DEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKALVTCAAM
                     YAAIPLSWLATE"
     gene            complement(6993..8189)
                     /gene="dpaL"
                     /locus_tag="OQQ72_003556"
     CDS             complement(6993..8189)
                     /gene="dpaL"
                     /locus_tag="OQQ72_003556"
                     /EC_number="4.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
                     /protein_id="HCS2013154.1"
                     /translation="MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRP
                     TPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSF
                     EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAE
                     CIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR
                     EMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV
                     NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRI
                     ISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVWEG
                     KHAVAP"
BASE COUNT         1961 a         2013 c         2179 g         2163 t
ORIGIN      
        1 ttagcttata cagatatcat tgagtgaccg gtgttgagaa atccggtggt ttagggggat
       61 agagcaacaa tcgcaccact cttgccaggt ttggcgggaa atataaaaaa atgtgaggcg
      121 gctcgaaact taagggcttt ttgtgaatga actcacaggt gctaaatgag aattaaaatc
      181 actcctgaaa attattattg ccagcccata tatcactttt tctcttttct caaaatcagt
      241 gattccttat cattatgata aagagtgctg gagggattaa atatttgaac gcaatcgttt
      301 aactacgttt tttaaatttt agtatacctt ttttgcactg taataaagtc gtccggagta
      361 tcaatatcta aaattatttc tgcattttct acttcgacgg aataatgagc tcccataagg
      421 agtgcctgac gcatattggt gatattgggg cgcttgattg cctgcatcag gcatggtttt
      481 gacactaaaa tcggatggcc ggggatgcca ttatggagtg gcagtattgc gccatcattt
      541 cgtaacgacc agatttttct gaaaatatcg atggtgaggg ttggcatgtc accgtgggtg
      601 agaaaacaat gttctgtttg cactgcgggt actgcggcct ttactgatgt tagtaaaccc
      661 tgcgcataat ctgggttgtg gataatagtg atattgctct ggttcacata acgttcgtgc
      721 agttcattac cacgatagcc ggtgactaaa ataattcggc tacaaaactg caacgcattt
      781 ttgatacttg tatcaagaat tgtcccctgt tgccagggta acatcatttt ccattgcccc
      841 attcttgatg ataatccggc agcggtaatt atacagtcga tggctgacat agtggttcca
      901 ttatttatag gggctaataa cgcctgataa ttgcgttact tcctgatgga ttaagttggg
      961 gataatttat cccagagagg tcataaagac tcgtgaaaag tatagttgac ccatcggcat
     1021 tattcattga tttaggtgcg cagaaacgtc ccactgtgat ttctgttgtt ggtgctgggg
     1081 ggaaaaccag cttgcttttt tggctggcag aactgctcca ggctagcggc aggcgtgtgt
     1141 taatcacgac gacaacacat atgtttatgc caacgtctca ctggcccgtg gttttctgtc
     1201 gtgatcccgc catgcttcct catgcgtctc ttacatcccc catttcattt tgttttcaca
     1261 gctggaaagc gaaccaggga aaagtgcagg gatttacgcc agaagcgatt gatgcactgg
     1321 tgcaacgacc agagtgtgac gtaattctca ttgaagcaga tggctcgcgt gcaatgccgt
     1381 taaaagcgcc tgatgagcac gaaccttgca tacccaaaag cagttgctgc gtgattgctg
     1441 tgatgggagg acatattttg ggcgcgaaag tgagcacaga aaatgtccat cgctggtcgc
     1501 agtttgctga tattactggg ttaacacctg atgcaacctt gcaactgagc gatctcgttg
     1561 cgctggttcg ccaccctcag ggggcgttta aaaacgtacc gcaaggttgt cggcgagtct
     1621 ggttcattaa ccgtttttct caatgtgaga atgcgattgc acaaagcgag ctccttcaac
     1681 cgctgcaaca acacgacgta gaggcaatct ggctaggcga tatacaagaa catcctgcaa
     1741 tcgcgcgcag atttgtgaat tagcggcccg ggtattccgg gttactgaaa ggatatccat
     1801 tgaggttggt atgaatattt tcacagaggc tgcaaaactc gaagagcaaa attgtccgtt
     1861 tgcgatggcg caaattgttg atagccgagg ctcgactccc cgccattctg cacaaatgtt
     1921 agtgcgcgcc gatggttcta tcgtcggtac aattggtggc ggaatggttg agcggaaggt
     1981 gattgaagag tcacttcagg cattgcagga acgtaagccg cgattattcc atggacgtat
     2041 ggctcgtaac ggtgcggatg ctgtcgggtc agattgtgga ggtgcaatgt cagtatttat
     2101 cagcgtccat ggtatgcgtc cacgtctggt gttgattggc gcggggcatg tcaaccgggc
     2161 gatagcccag agtgccgcgc tattaggatt tgatattgcc gttgccgata tttatcgcga
     2221 aagcctcaat cctgaactat tcccaccatc aaccacgctt ctccatgctg agtcgtttgg
     2281 tgcggcagtg gaagcactgg atattcgccc tgataatttt gtcctgattg ccacgaataa
     2341 tcaggatcgt gaagccctcg acaaactcat tgaacagccc attgcatggt tggggttgct
     2401 ggcaagtcgc cgcaaggttc agcttttcct gcgtcaattg cgtgagaaag gcgtggctga
     2461 agaacatatt gcccgtttac atgcgcccgt tggttacaac ataggtgcgg aaacgccgca
     2521 ggagatcgcc atcagcgtgc tggcagaaat attacaggtg aaaaataacg cgccgggtgg
     2581 gctgatgatg aaaccttctc atccttccgg acaccagctg gtggtgattc gcggtgcggg
     2641 agatatcgcc agtggtgtgg cgctacgtct gtatcatgcg ggttttaaag tgatcatgct
     2701 ggaagtggaa aaaccgacag tgattcgttg taccgtggcg tttgcccagg ccgtgttcga
     2761 tggcgaaatg acggtcgaag gcgtcactgc tcgcctggca accagctctg cggaagcgat
     2821 gaaacttacc gaacgcggat tcatccctgt gatggtagat cccgcctgtt cattgcttga
     2881 tgaactgaaa ccgctttgcg tggtggacgc tattctggcg aaacagaatt tgggaacgcg
     2941 ggcagatatg gcaccagtaa caatcgcgct tgggccgggc tttactgcag ggaaggattg
     3001 tcatgcggta attgaaacaa atcgcgggca ctggctcggt caggtgattt actctggttg
     3061 tgcgcaggag aataccggtg ttcctggcaa tattatgggg cataccaccc gacgggtgat
     3121 ccgtgctcct gctgcaggca ttatgcgatc caacgtgaaa ttaggcgatc tggtgaaaga
     3181 gggcgatgtg attgcctgga ttggtgagca tgaaattaaa gcaccgttga cggggatggt
     3241 gcgtggcttg ttgaacgacg gcctggcagt ggttggtggt tttaaaattg gtgatatcga
     3301 tcctcgtggt gaaaccgctg atttcaccag cgtttctgat aaagcccggg cgattggcgg
     3361 cggcgtactt gaggcgttaa tgatgttgat gcatcagggc gtgaaagcga caaaagaagt
     3421 gctggaagtg gcttaaatga aaatggccgg atggtattac ccacccggcc ttaaaattac
     3481 tgacaaatca ccgttccggt tttgccttca atcccttctt tcgctttgct caatacggta
     3541 atcagtgctt cacgacctgc gcgagagcga gcaaacgagg cggcagcttc cactttaggc
     3601 agcatagaac ctttcgcaaa atgaccttct tcgataaagc gttcagcatc acttaatgac
     3661 aggcgatcga gccactgttc attctcttta ccgaagttaa tggccacttt ttctaccgca
     3721 gtcagaatga tcagcatatc ggcatcaatc atttctgcta aacgggcgct ggcccagtct
     3781 ttatcgataa ccgcgctggc accacgcaga tggttacctt cacgaataac agggatacga
     3841 ccaccgccaa cggtgatcac cacctggcct gcatctacca gagctttaac agtttctttt
     3901 tcaatgatat caaccggttt tggcgaggca acaacacggc gatagccgcg accagcatct
     3961 tctttcagag tgtaaccctg ttttgtcagt tgctctgctt cttgctcggt aaagaacgaa
     4021 ccgatcggct tggtcgggtt gaggaatgcc ggatcgttag cgtcgacttc gacctgagta
     4081 accagcgttg ctacaggttt attaatgccc cgagaaagca gttcttctct taacacgttt
     4141 tgtagatcgt aaccaatata accctggctt aaggcaacac agacagacat cggcagcatt
     4201 ggcgagtgtg cttcagtttt tgcggcagct tcaaaggcct ggttaatcat gcccacctgc
     4261 ggcccgttac catgagtgac gataacttca tgtccttggg caattaaatc aacaattgcc
     4321 tgagaagtaa tttttaccgc tttcatttgt ccggccaggt catcgcccag cgcattcccg
     4381 cccagggcga gaacaatttt cttactcatt tttcctcact catcattctt gattgtgtat
     4441 agatccctga cagtggttag agcacgggag ggacaaacgg tttgcgtcgc aggaaacgac
     4501 ctcgcccggc tttgcctgta aaggtgccgt cacagaaaat cgtttcacca cgggataagg
     4561 ttctgacaat cgcgccctga caggtaaaac cctcccatgg cgagtagtcg gcgttgtcgt
     4621 ggagatggcg atgctgaatt tgttggctct gacgtgggtc gataatcacc acgtcgccat
     4681 cggaaccggg cgctaataat cctttttgcg gccacaggcc aaacagcctg gcgggcattg
     4741 cgctggttaa ttcaacaaag cgttccggtg ttatacgtcc cgtcatcacg ccactggaaa
     4801 acagtaactg catgcggttt tccacaccgg gtaagccatt tgggcagcga ctgaaatcgc
     4861 ctttagaaat ttgcaggcgt tgagccatcg agaaggtgca gtgatcggtc gccaccacgt
     4921 caatcgcacc atcgctgatg ccacaccaca gtttgtcctg ctcgcgtacg ttacgcagcg
     4981 gtgggctaag aatgaacttc atgccatctt ctgtatcgta actgcgttcg tccaacagga
     5041 gatattgtgg gcaggtttca acccagactg gctggtgatt cgcacgggca agacgcagat
     5101 aatccagacc taagccgtta gacaggtgca cgatatagag cggggcgtta ccggcaattt
     5161 gtgccaggtt aatcatgcgg gcgatggctt ccgcttcgca ttccagaggg cgactcaagg
     5221 catgatagcg cggcgcggtt aaccctgcgg cgataaattc cgcccgcttg ctggcgatag
     5281 ccgcatcatt ttccgggtgc acggtggtca gcgcgccgga ttcatgcaag cggcgtaatg
     5341 cctgcaaaac ctcgtcatcg ttgagtttgt attgataggt taaatagagt ttaaaactgc
     5401 tcagtccttc ctcgaccatc atcgggattt cgtcgaggat tgcgtgatta atgtgctgga
     5461 tcacaccgtg aaagctgtaa tcgatgaccg ctttatgggc ggcataacca cgataaacct
     5521 ccagttgatg gcgtaaccga cagccgtttg ggccaaatcc catatggtca ataatggttg
     5581 ttgtaccgcc acacgcagct gcgcgggtac cggtaaaaaa atcatcacaa ctgcgcgcga
     5641 tgccgacatc aatattgaaa tgcgtatgga catccacgcc gcctgggaaa acgtaacagc
     5701 cagtggcatc aatttcttca tacgggagct gcggcgaaat attgttgccc aactggcgaa
     5761 caatcccgct ttcaatcagc aaatcctgtt tggcttgtcc atctgcgtta acgacagtgc
     5821 cgtttttgat caatacgcgc atagcaaact ccaaaaaccc tccggcgaac cggaggggaa
     5881 taagtgaaga gtaattactc tgttgccagc cagcttaacg ggattgcagc gtacatcgcg
     5941 gcacaggtca ccagtgcttt aacggtgaag tgatcttctt ccactttcca ggtcgggaag
     6001 tagcattcgg ttgggtaaac caggccagtc caggacggac ggtcgtagtt gtacatagaa
     6061 acaaccgcgt tagctttctg tactgcaggc agggcgcgga tttcgtccag cgcgccttcc
     6121 caggtttcgc cccaggtcag acggcggtca atagagacgg cgcagctatc tgctacagcg
     6181 caacggcttg gggatgtgaa gaagatttca gaaacggtga gggtgccttt gccgaggaat
     6241 tcgtcataac ccagacgttg ggagagttct tgtaattcgc caagaatcgg acccattttg
     6301 aaaatggcgt tgtcaccgcg ttctggcgca gaaccgtggc agctaacacc ctgaacatca
     6361 atacgaattt ccatacgacc gcgctgacca cggtatatct ggcagtcggt tggttcggta
     6421 ctgaccacaa attccgggcg aatgccggat tgttcaataa tgtactgcca gcacagaccg
     6481 tcgcagtctt cttcctgcac agtaccggta accagcaggg tatattcatc ttccagaccg
     6541 aggtctttaa tgattttacc ggcataaacc atagatgcca tgccgccttc ctggtcggaa
     6601 gtaccgcgac caccgattag ctcatcagtt tccatgcctt cgtacggatc gaagtcccag
     6661 tttttgatgt tgccaatgcc gacggtatcg atatgagcgt ccattgccac cagacgcggg
     6721 ccgtggccga tataaccgag aacgttgccc atcgggtcga tttcaacttt atcgaagccg
     6781 actttttcca tctcttcttt aatacgatgt actacgcgtt tttcgtcgca gctttcactg
     6841 ggaatagcaa ccatgtcgcg caggaagcga gtcatgtccg cctggtaatc ttttgctttt
     6901 tcaagaatca gtttgaatgg aatattctta gccattattt ttctccagat tttttactcc
     6961 ccgttttgca gggagtagtt ccaatagggt gattaaggtg ctacagcgtg tttgccttcc
     7021 cagacaactt cgcggtagtg cttcacgtcg gtgtcgcctt cagtactgat aaccagcact
     7081 acggcatctt tgttcagcgc cagtttttcc atcaggcttt gacgttgcgg gtgataatga
     7141 accgctgcga gaacgcccaa accgacagcg ccggattcac cggagatgat gcgcgggtcg
     7201 ttgccgtacg gattacccag cacgcgcata cctaatgcgg caacgctgtc ctggcaggag
     7261 atgaattggg tggcgcagtt acgtaggatt tcccagccca gcgggttagg ttcgccacag
     7321 gccaggcccg ccatgatggt ggccatatca ccgccaacgt tgacgatgtc gcctttgacg
     7381 ccggagcgat aaatacagtc agctttgtca ggttcaacaa taatgctgtg cagattttgc
     7441 gggctgtaga cgtcgaccag ataacccagc acaccaccgg ccattgctcc gacaccggct
     7501 tgcagcagaa cgtgcgtcgg ggttacgccc atttcacgca tttgctcgac ggcttcatct
     7561 gccagggttg cgtagccttg catgatccag gttgggattt tggtgtaacc ttcccatgcc
     7621 gtgtcctgta ccacttccca gccgtgctgc tgcgcgtgtt gcatggtcag gcgaacggta
     7681 tcgtcatagt tcatatccgt gacgatgcac tcggcaccga ggttcagaat ggcgtcaacg
     7741 cgttcctgag cagaaccttt cggcatgtaa atcaccgcat tctgtccgag ttgctgtgct
     7801 gcccacgcca caccgcgccc gtggttgccg tcggtggtgg tcgcgaaagt cattttttcg
     7861 ccgatggcat ttttcaggtg ctcaaatgac agcgtttcga tatcaagatg atatttttca
     7921 cacaataatt gagcgatggc gtacgcaccg ccaagcattt tgaaggcgtt cagaccgaat
     7981 cgttttgatt cgtctttgac gagaattttc ttcacaccaa aaaggtttgc gagatcgtcc
     8041 agcgcacaaa gcggtgttgg gcgataacca gctattttct ggtggaactg gcgcgccagt
     8101 ttggcctggc tttgcgaaaa gagcggtgat gtttcgccgt tgaaaaattt gttatcggcg
     8161 atatcaatct tcaatgagaa aacggacata tcctatcctt ttggcctctg gaaatagagg
     8221 gccgaccagc tgatcggccc gaggggttat ttcacgcgtt cttgcgcttc tttcagcagt
     8281 tgctcgagca gtgcacctgg tttggcgtat ttacgg
//
LOCUS       DAJVUY010000170         8303 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.171, whole genome shotgun sequence.
ACCESSION   DAJVUY010000170 DAJVUY010000000
VERSION     DAJVUY010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8303
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.171"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(96..1766)
                     /gene="hscC"
                     /locus_tag="OQQ72_003557"
     CDS             complement(96..1766)
                     /gene="hscC"
                     /locus_tag="OQQ72_003557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HCS2013155.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEIHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(1850..2785)
                     /gene="rihA"
                     /locus_tag="OQQ72_003558"
     CDS             complement(1850..2785)
                     /gene="rihA"
                     /locus_tag="OQQ72_003558"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HCS2013156.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTDNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            complement(2903..3628)
                     /gene="gltL"
                     /locus_tag="OQQ72_003559"
     CDS             complement(2903..3628)
                     /gene="gltL"
                     /locus_tag="OQQ72_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HCS2013157.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            complement(3628..4302)
                     /gene="gltK"
                     /locus_tag="OQQ72_003560"
     CDS             complement(3628..4302)
                     /gene="gltK"
                     /locus_tag="OQQ72_003560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HCS2013158.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNIFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            complement(4302..5042)
                     /gene="gltJ"
                     /locus_tag="OQQ72_003561"
     CDS             complement(4302..5042)
                     /gene="gltJ"
                     /locus_tag="OQQ72_003561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HCS2013159.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            complement(5212..6120)
                     /gene="gltI"
                     /locus_tag="OQQ72_003562"
     CDS             complement(5212..6120)
                     /gene="gltI"
                     /locus_tag="OQQ72_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
                     /protein_id="HCS2013160.1"
                     /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV
                     GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL
                     QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKDKAVVVTS
                     GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK
                     PDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP
                     KNLNMNFELSDEMKALFKEPNDKALN"
     gene            6575..>8303
                     /locus_tag="OQQ72_003563"
     CDS             6575..>8303
                     /locus_tag="OQQ72_003563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCS2013161.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALRET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGDQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYV"
BASE COUNT         2074 a         2049 c         2075 g         2105 t
ORIGIN      
        1 tatgctctcg gcaaaatcgc gatgttgttt agttgacgat gtgttttttg cgccgatgcc
       61 ggatgcagcg tttacgccgc atccggcagc cgtgtttatg ggatctcaat ggctaaataa
      121 tcgctcgccc gccgccgaac ttcatccacg cgggccatgt cgtttgactg tagcgccgca
      181 tcaaaatcgg tgatcacccg gccaatctct tctcgctcgt cacccagcgc tcgcgcccac
      241 aactcttcca gtttggcttt aaaggtgcga ttgatgagca tatcgcgcgg ataaattttc
      301 aatgcggata accgcgtccg actctcttca atctgctgcg cgctcaatgt taccgggctg
      361 tggttaatca ctctggactt aacgctgccg tcttccagaa gcacgtcaac ttcaagcaac
      421 ccgttgatat cataactaaa gcgaatatca atcgactgat aagccccggt tttcttcaac
      481 ggcacatcga aggattcaac cagaatgtta tttttaactt tgtggttttc tccctgatag
      541 acgttaaccg taattgaatc ctgctccggg tgcatggtcg agtaagtttc tacacgcgac
      601 accggtactg tggtgtttcg ttcaataatc ggcgagaaaa tgccggaaac gccctggcgg
      661 ttaacttcaa cgcccaacga gtaagggcaa atatcagtga ggattacctc ttcaatatct
      721 tcactgcgta agcggcaggc ggcctggatt gctgcgccca gcgcgacaat ggtgctcgga
      781 tcgtaacttt gatacggtaa tttgccaaac agacgcacgg cgattcgctg caccagcggc
      841 atttgtgacg cgccgccaac cagcaccaga ctgtcgattt gactcggctt cagacgcgca
      901 tcgcgcaacg cctgttcaat cggcactcgc aagcgattga gcagcggcaa ccacaaatct
      961 tccagttcgt tctcgtaaaa ttcgcattcc cgcgtttctt cctgatactg ccagcgaatg
     1021 tgcaatggcg attgattgct acattttgcc gcttccacac aggcgtacaa ggctgccagt
     1081 tcactctcgt taagcgtggt cctggcaact tccgcgcgtt ttaaaacctc atcgaccagc
     1141 atatgggtaa aatcttcgcc accgaggaag ctatcgccag cggaggcgtg aatttcaatc
     1201 accggcgtgg cgtactcaag caccgtaacg tcaaacgtgc cgccaccgag atcaaaaacc
     1261 agcgagcggg tattttgttg cgtatgcagg ccatatgcca tcgcagctgc tgtgggttca
     1321 ttaattaagc gtaccgcatt taacccggct aactccgcag ctaaacgggt atgcttgcgt
     1381 tgttcatcgc tgaaataagc cggaacggag atcaccacat ctttaatcgg acgttgcaga
     1441 aattcttcgg catcttcttt taatgagcgt aataccaaag aggacagttc tggcgcgtta
     1501 aatgtgtcgc tgcctaaccg ccagttggta ttactgccca ttgcgcgttt aaataacgct
     1561 gccgttttat ccggatgcga agtacgccgt gatacagccg gttttccgac taaaatatga
     1621 ttattttcat ccatgctaat tatggatggt gttaaatatt caccgaactt atttggaatt
     1681 aattgcgcgg caccgtcttt ccagacggca attaaactat tggtagtgcc gagatcgata
     1741 ccaatggtga gttctgcatt atccattgca tttatatctt gaaagaaaaa gagataaaca
     1801 gattaagacc acccaggtaa cgcgtggtga tcttaatcaa tgacgtgtgt taagcgtaaa
     1861 atttcagacg atcagccagt aaatcaacaa agccctgacg atcaacatcg accattacag
     1921 tggcattcgg tttattgtca gtcagataat aataatcaac aaccgtcata ccctgggtat
     1981 atttcccctg tgtttccacg ccaacccagc gctcaacagt ggtaaacaac tcgggtttca
     2041 acagccaggc gatggtgcat gggtcatgca gcggtgcacc gacaaagccc catttttcgt
     2101 ctttatgata ttcgaggaag aaatccagca gttcggcaac aatggttgaa acagggttgc
     2161 caatcgcgcg gaaacgctcg gtgtcttcaa tgtggatttg cgctttatga gtaacatcca
     2221 gaccggccat caccactggg atccctgact ggaagacaat ttctgccgct tccgggtcaa
     2281 cgtaaatatt aaattcagcc gcaggcgtcc agttaccaag ccccattgcg ccgcccataa
     2341 tcacgatacg ggcaattttg ctatgcagtt ccggatggct attgagcagc aaggcaacgt
     2401 tagtttgcgg tccggtagac acaatcgtga caggttccgc actttcgcgc agcgttttcg
     2461 ccatcagctc taccgccgta cagttttgcg gtgcgaacgt cggttccggt aatgccgggc
     2521 catccagacc gctttcgccg tgcacattgt ccgcgataat caactcacgc attaacggtt
     2581 ttaccgcgcc gcctgctacc ggaatatcgg tgcgattaag caaggtcagc atacgcagaa
     2641 cattgcgtaa ggttttttct ggtgtctggt ttccggcgga agacgtaatt gctttgacat
     2701 caagctctgg tgaggcgagg gcgagaacta ttgcgatagc gtcgtcatga cctgggtcgc
     2761 aatctaacag aattggcagt gccattgttg ctccttgttg tgtgcttctt tgcgacaagg
     2821 gtaacgccag gatgtaacag atacgagggg cgaaacgata aagcgtgaga tggcgcgcac
     2881 ttgggtatgc gcgccagagt gattaatgca ggattttcgc gaggaagtct ttcgcgcggt
     2941 ccgatttcgg atcatcgaag aaagcgtctt tcggcgagtc ttcgacaatt ttaccctcgt
     3001 ccataaagat cacccgattc gccactttgc gggcaaagcc catttcgtgg gtcaccacca
     3061 tcatggtcat tccttcgttc gccagttcca ccatcacgtc cagcacttcg ttgatcatct
     3121 ccggatccag cgccgatgtc ggttcgtcga acagcatcgc aataggatcc atacacaacg
     3181 cgcgagcgat tgccacacgc tgctgctgac cgccggaaag ctgcgccgga aatttattgg
     3241 catgtgcgga aagtcccacg cgctccagca atttcaatgc tttttcacga gcgggcgctt
     3301 tatcgcgttt aagcactttc acctgcgcca gagtcaggtt ttcaataatc gacaaatggg
     3361 ggaacaactc aaaatgctgg aacaccatcc cgacgcggga acgcagcttt gccagatcgg
     3421 ttttcttgtc attaaccacg ataccatcga cggtgatttc accttgctgc actggttcga
     3481 ggccgttgac ggttttaatc agcgttgatt tgccggaacc agacgggccg caaaccacca
     3541 ccacttcgcc ttttttcact tcggttgagc agtcggtcag cacctgaaag tgaccatacc
     3601 attttgaaac atttttcagg gtaatcatta tgctgtcctt cttttcaagt agctgaccaa
     3661 caacgacgcg ctaagactaa taacgaaata aacaaatccg gcaaacagga tcatctcaac
     3721 ctgcgtacca tcacgctcac caatggttga ggcggtacgg aagaaatcgg ccagagataa
     3781 cacatacacc agtgaggtat cctggaacag tacgatgccc tgagtgagca gaagcggcac
     3841 catcgcgcgg aacgcctgcg gcagaataat cagtttcatc gactgccagt gagtcattcc
     3901 caacgccagc gcggcgctcg actgaccacg agaaatactt tgaataccag cacggataat
     3961 ctctgaatag taggccgctt caaacatcga aaacgccacc atcgccgaaa ttaaacggat
     4021 atcatttttt ggtgataatc ccagcacgtt ttgcagaaaa cctggcacga tcaggtaaaa
     4081 ccacagcaaa accataacta aaggaatcga gcggaatatg ttaacgtagg ctttggcaaa
     4141 ccacgctacg ggcgcaaagc tggacaagcg catcaccgcc agcatggtgc cccacaaaat
     4201 accaatcacg actgccgtga cggtgatttt cagcgtgatc accagcccgt cgagcagata
     4261 tggcaaggaa gggacaatgg aactccagtc aaactcgtac attatttgcc ccccatgttg
     4321 ccaggcaggc gaactttacg ttcaaccagc gtcattacca gcatgataat cgcgttaatc
     4381 aacacatacg ccagcgtaat agcggtaaac gactcccagg cgtgggctga gtaatcaagc
     4441 aatttacccg cctgcgccgc catatccacc agaccaatag tcgaggcgat ggcggagttt
     4501 ttcaccaggt tcatcatctc ggaagtcatc ggcgggacga taacgcgata agcattaggc
     4561 agcagtacgt atcgataagc ctgcggtagc gtcaggccca tcgccagcgc ggcatttttt
     4621 tgcccacgcg gcaacgactg aatggcggcg cgtacctgtt cgcaaacacg ggcggcggta
     4681 aacagcccca ggcagagcat ggatgaaagg aaaaactgaa tattgggatc cagctcggcc
     4741 ttaaaccaca tgccgatttt ctcaggcaac agctccggga tcaccagata ccaggtaaag
     4801 aattgcacaa tcaacggcac gttgcggaac agttcgacat acaacgtacc cagaccggag
     4861 agaaaacggt ttggaacggt acgtaaaatg ccgaaaaatg aaccgacgag gaaagcgata
     4921 atccaggcgc agatcgacaa agcgatcgtc acctgaaaac cactccagat ccaaccaaga
     4981 taggtggtgt tgccgaacgg ggcttgttgt aaaaaaatac cccagttcca gtctatagac
     5041 ataaatctac tccagaaaaa agagggtagc agcgttaact gctaccctcg aagattgtta
     5101 cccagcgtat tgcggttttc aggcccgatg gggaacgacc atcaggcgta tagtctgtcc
     5161 gtgctacgta acaatcgaga gggctggaat ttccgcccct ggttcttgta attagttcag
     5221 tgctttgtca ttcggttctt tgaacagtgc tttcatttcg tctgacagtt cgaaattcat
     5281 gttcaggttt ttcggcggaa ttggattttt gaaccattta tcaaaccatt tttccgcttc
     5341 accggaagtc tgcacctgag cgatagtgtc atccatcagc tttttgaact gcggatcatc
     5401 tttacgcaac atgcaaccgt aggcttcctg agactgcggc ttgccgacga tatcccagtt
     5461 gtctggtttc ttcgctttcg cacgttcacc ggccagcagg gcatcatcca tcataaaggc
     5521 aacggcacga ccgctttcca gggtgcggaa agagtcaccg tgatctttgg cgctgatgat
     5581 gcgcatattc attttttgct cttcattcag tttgttgagc aaaacttcag aggtagtgcc
     5641 ggaagtgacg actacggctt tgtctttcag gtcggcaaaa tctttgatat cgccgccctt
     5701 tttggtcagc aggcgcgtac cgaccacgaa aatagtatca gagaaagccg cctgtttttg
     5761 gcgttcgacg ttgttggtgg tagaaccaca ttcaaaatcg aaagtgccgt tttgcagcag
     5821 tggaatacgg ttttgtgagg taatcggaat cagttttacc tgcaagtccg gtttgttgag
     5881 tttctttttc actgcttcaa caatggcgtt ggagtaatcc tgcgagtaac ccaccacttt
     5941 ttgctgattg tcgtaataag agaaaggtac tgaagattca cggtgaccga cgacaatcac
     6001 accgtttttg gcgattttgt ccagcgtact gcctgctgcc ggggcggcgt catctgcctg
     6061 tgccagtcct gcggaaagcg ccagggcgag gattgctgtg gcaggtttac gtaattgcat
     6121 atccaactcc tttatcttct gcgttaagaa cgcatggata cccgttgtga gtgtttgtgt
     6181 tgttatcgtc tgcaacttta ttgtgcagtg ttgtgcctgt taggtaacat ttagtttggc
     6241 taaatgtaaa gatattgctg ttttattgtt tgtttttgcg agatgcgccg caccattccg
     6301 aagcaaaatt cttaaaccgc acctttttgg tgctaccgct gatttgtggt ggtgcaacct
     6361 ggttgcgtcg cggctgattt catcgcttac acagtaaata aagcaactta catgccaaaa
     6421 aatacttagg ggcaaattaa ttacgattgt aattttaggc tgaaaaagtc atatttcgga
     6481 cagaattatc ttttcggcat gggacgtttg ccgggatgat aactgcacac gggaaaaatg
     6541 ctttttacct gtcttttcaa ggaagaaaca ccttatgtct gcatcttcgg ttaagccgtt
     6601 aaatgttcaa ttacccgcaa taacccttat cctttttgca ctctgtattg ggatattttg
     6661 ttatctcgca caatggatga gttatgaaga ggtcgatcaa tccgcactta tccatctcgg
     6721 cgcaaacgtt gcgcctctta ctttgtcggg tgaaccctgg cgcttattga gcagtatctt
     6781 tctgcacagt agtgtttctc atctgctgat gaatatgttt gcattcctgg tcgtgggagg
     6841 cgtggcggaa cagattctgg ggaaatggcg actcctgatt acctggttat tctccggcgt
     6901 ctttggtggg ctcatcagcg cctgttatgc gttacgcgat agtgatcaga tagtcatcag
     6961 cgttggggca tccggggcaa ttatgggaat agctggcgct gcgatagcaa cacagcttgc
     7021 ttcaggtgcg ggcacatacc ataaaaacca gcggcgagta ttttctctgt tgggtatggt
     7081 ggcgctgaca ctgttgtatg gtgcccggca aacaggaata gataatgctt gtcacattgg
     7141 cggcctgatt gcgggtggcg cgttgggttg gctgagcgcg cgtttatctg ggcaaaaccg
     7201 actcgttacg gaaggcggga ttattgttgc gggcagtctt cttctgaccg gggctatctg
     7261 gcttgcgcag cagcagatgg atgagtcagt tttacaagtc aggcaaagcc tgcgtgaagc
     7321 gttttatcca caggagattg aacaagagcg acggcaaaaa aagcagcagt tagcggagga
     7381 acgcaacgcc ctcagggaaa cattatccgc tccggtaagt cgtgaacagg ccagtggtga
     7441 tttgctcgct gagattgccg atatccatga tatggcgatc agtcgggatg gtaatatgtt
     7501 gtatgccgca attgaaaaca cgaacagcat tgttgttttc gacctcggac aaaagaaaat
     7561 cctgcatacc tttacagcgc ccatagcgaa agaaaagtca gtcaaacatt gtggtggctg
     7621 taaagatcag ggcgtcagat cgctggcatt aagcccggat gaaaagttga tttatgcgac
     7681 ttcatttgaa gcgaatgcgt tatcggtcat taacgtggcg acaggggaga ttattcagtc
     7741 gattaccacc ggtgcacatc ctgacagcct tatcctctcg cgtgatggca caaaagcctg
     7801 ggtgatgaat cgcaccagta atagtgtgtc agcgattgat ctggtgactt atcagcatgt
     7861 ggcggatatc ccgctggaga aatacgacgg ggcggggacg agcggtaaac caggcgcctg
     7921 ggttatggca ctttccccgg atgaaagaac attactggtt ccgggagcag gcagaggtaa
     7981 catcgtgcgg atcaatacca tcacgcatca gaaagaagac tttcccgcag gtgatgcgcg
     8041 tggaacgata tcggcgatgc gttttcgacc tgaaaacggc gaggttattt ttgcagatag
     8101 tcaggggatt tcacgtataa gcgtagggga tcaacaagcc agcattatga cgcaatggtg
     8161 tagcaggagc gtttattccg ttgagggtat tagcccggac ggtcaatatt tagcgttggt
     8221 gtcatatggc ctgcaaggtt atgtcatcct gctcaatatt aatgccgggc agattattgg
     8281 cgtttatcct gccagctacg tta
//
LOCUS       DAJVUY010000171         8254 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.172, whole genome shotgun sequence.
ACCESSION   DAJVUY010000171 DAJVUY010000000
VERSION     DAJVUY010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8254
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.172"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..77)
                     /locus_tag="OQQ72_003564"
     CDS             complement(<1..77)
                     /locus_tag="OQQ72_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310264.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013162.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVI"
     gene            complement(88..786)
                     /locus_tag="OQQ72_003565"
     CDS             complement(88..786)
                     /locus_tag="OQQ72_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS2013163.1"
                     /translation="MQDIHEESLSESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNE
                     KGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARPSLTVSNLFGLVTGMAEDLQSLVGAT
                     VVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVEQMSQLTAMTASFVLATPTETDG
                     ALFPGRIMLANTCMWTYRSDECGYTGGAVADEFDKPTTDIRKDRCSKCMRGCELRRNV
                     GNFGGFLSINKLSQ"
     gene            complement(786..1127)
                     /locus_tag="OQQ72_003566"
     CDS             complement(786..1127)
                     /locus_tag="OQQ72_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013164.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
     gene            complement(1120..4380)
                     /locus_tag="OQQ72_003567"
     CDS             complement(1120..4380)
                     /locus_tag="OQQ72_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS2013165.1"
                     /translation="MTEDPCEDDFPVTTLKISANSQSFQSEIQRASRMGSEYYRTLQN
                     GGRHAAAAAREQRRALAELNSQLTEIRGSAVGMAGAFAGAFATGHLISLADEWGSVNA
                     RLKQASQSSDEFSSSQKVLMDISQRTGTAFSDNAALFARSAASMREYGYSADDVLKVT
                     EAISTGLKLSGAGVAESGSVITQFSQALAQGVLRGEEFNAVNENGDRVIRALAAGMGV
                     ARKDLKAMADDGKLTADKVVPALISQLGILRDEYAAMPETVSGSITKVENAFMAWVGE
                     VNEACGVTKTLSGVLNGVAGQIDNVATAVGALVAVGVARYFGNMASGAMSATAGLVTA
                     ARNEVALAEAQFRGTQIATARARAAVYRAQQAVAAARGTEMQIAAEARLAATQERLNR
                     NIAARSAAQNALNSTTAVGSRLMSGALGLVGGVPGLVMLGAAAWYTLYQNQEQAWESA
                     RQYALTIDEIAHKTPSMSLPEASDNEGRTRAALTEQNRLIDEQASRVKSLQEKIAGYQ
                     YVLANPGWTTGDGFMINHLTSVKTVTEGLAQATEQLAVEQSRLALMQEKAQSIQDVLA
                     GLEDRRVALIRQQAAEQNKVYQSMLVMNGQHTEFNRLLGLGNELLQQRQGLVNVPLRL
                     PQATLDDKQQSALTKTERELALSRLKGEEKERVRLGYAADDLGFVGDPYQEARQRYIS
                     NALEAWRNNEANKPKSRGGKSETEKAEDSFSRLLKQQKEQLALAGQNTELAKLKYQTA
                     QGELKTLTEMQKQELLRNAALIDQQKIREQLRSREETLKNDNVAARASNEAELLGYGQ
                     GERLRERMRELQQIRDSFRQKDADLQSQYQTGDISEDFYRQALAQNAQYLSERLKEQE
                     AFYAESDVQRADWQKGLQEGFSNWVDNASDYASQAAQLATEGISGMVNNITEMLNGNK
                     VEWRSWASSVLQEISKVLMNAAIVNGIKTAANSMSGAGGFIGSIGSWLGGAVANAKGG
                     VYTSANLSAYSNSIVDTPTYFAFAKGAGLMGEAGPEAIMPLTRAADGSLGVRAVGSMN
                     GSAGLVYSPVYHIAIQNDGTNGQIGPEAAGSLVQLIDQRVQAVMLSMRRDGGMLSG"
     gene            4425..4754
                     /locus_tag="OQQ72_003568"
     CDS             4425..4754
                     /locus_tag="OQQ72_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS2013166.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            4741..5133
                     /gene="tnpB"
                     /locus_tag="OQQ72_003569"
     CDS             4741..5133
                     /gene="tnpB"
                     /locus_tag="OQQ72_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2013167.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKVRSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWQNEPELRPENTKNTLLTQ"
     gene            5140..6741
                     /locus_tag="OQQ72_003570"
     CDS             5140..6741
                     /locus_tag="OQQ72_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HCS2013168.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKMIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
     gene            complement(6876..7136)
                     /locus_tag="OQQ72_003571"
     CDS             complement(6876..7136)
                     /locus_tag="OQQ72_003571"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013169.1"
                     /translation="MATLRELIIKIVSFRGTHIDAFFRRASSAAHTNARGLITVDLFC
                     CTEAIARQVPEAGSEVLSSVIASGREVLTRGLIAGDDVLTRE"
     gene            complement(7184..7393)
                     /locus_tag="OQQ72_003572"
     CDS             complement(7184..7393)
                     /locus_tag="OQQ72_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HCS2013170.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            complement(7489..7863)
                     /locus_tag="OQQ72_003573"
     CDS             complement(7489..7863)
                     /locus_tag="OQQ72_003573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HCS2013171.1"
                     /translation="MKKDLKTLALARLSGFRHKTVKVPEWGNVSVVLREPSAEAWYLW
                     QEVLNGDGEDDDTLSVVAKTRRNLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVYGP
                     VHARLLRQALELIADAESARKK"
     gene            complement(7878..>8254)
                     /locus_tag="OQQ72_003574"
     CDS             complement(7878..>8254)
                     /locus_tag="OQQ72_003574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="immunoglobulin domain-containing protein"
                     /protein_id="HCS2013172.1"
                     /translation="VRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLDKTLT
                     VNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTFSKPGAQSADAGKYTCVVTD
                     SAEKAQSVTSVECTVTVSAAAG"
BASE COUNT         1785 a         2606 c         2013 g         1850 t
ORIGIN      
        1 cttatcacga agccgcacga ctccgcaggc gcacaccgcc gggcatgcgc cagaatcgct
       61 gattcagtct gtgtcataaa tcgggattta ctgcgaaagt ttattaatgg aaaggaaacc
      121 gccaaaattg ccgacattcc tgcgcagttc acacccgcgc atgcacttgc tgcatctgtc
      181 cttacggata tccgtggtgg gtttatcgaa ctcatccgcc acagccccgc ccgtgtaacc
      241 acactcatca gagcggtagg tccacataca ggtgttcgcc agcatgatac gaccgggaaa
      301 cagcgccccg tccgtctcgg tcggtgtagc cagcacaaac gaggccgtca tggctgtcag
      361 ctgcgacatc tgctccacca cccagcggtc actcagctcc tgctccgggt ccgcctccgg
      421 attgcccgca acgaaattca ccgcatccag aaaacgggca tacacccggc ggcggaccac
      481 cgtggccccc accagactct gcaggtcttc cgccatcccg gtgaccagac cgaacagatt
      541 ggacaccgtc agcgacggtc tggcactgct gccccggccg ttcatctcaa agccgctgcc
      601 gtcaatcggg tatgcctcat acttacgccc ctgccaggtg accggctccc ctttttcatt
      661 cagctcatta cagaaaaaat accgctcacc accctgcacc gtcaggtcaa tttcccagag
      721 taccacccgc ggtgactgct ctgatttaac cgactcgctc agactttctt cgtgaatatc
      781 ctgcatcagt tcaccacctg ctcaatcgta caactgaaat cactgtacct ggcgttatct
      841 gtgacgctcc actcccggca taccaccctc accgtccggt tatgtttcgg cggtcgccac
      901 aaaaaggcac ggtaaccacc atgccacgat aaaaactctt ccagccatcg ccgggtcgcc
      961 tcatccgtca cccggaacac cgcctgaaac gtcttcagtc gggcattaag tcccgtcggg
     1021 cggcgctgtt cataaccgtc accaaaccgt accctcgcca ccgacggttt ctcactcacc
     1081 tgcatccctt cacgcgggac cagatgcagc gtttttatct cagccactca gcattcctcc
     1141 gtcacgtcgc atggacagca tcaccgcctg cacccgctgg tcaatcagtt gcacaaggct
     1201 gcccgcagct tccggcccta tctggccatt agtcccgtca ttctgaatgg cgatatggta
     1261 gaccggggaa tacaccagac ctgcactgcc gttcatactg cccaccgctc gcacacccag
     1321 cgagccatcc gccgcccggg tcaggggcat aatggcttca ggaccggcct cccccatcag
     1381 tcccgcccct tttgcaaagg caaagtacgt gggcgtatcc acaatactgt tgctgtacgc
     1441 actcaggttt gccgaggtat acacaccgcc ttttgcattg gccaccgcac cgcccagcca
     1501 gctaccaata ctgccgataa atcctcccgc tccggacata ctgtttgccg ccgtcttgat
     1561 cccgttgaca atcgcggcat tcataagaac ttttgatatt tcctgcagca ctgatgaggc
     1621 ccagctgcgc cattccactt tatttccgtt cagcatctcc gtgatgttat tcaccatccc
     1681 tgagataccc tccgtcgcaa gctgtgctgc ctgtgaggcg taatcggacg cattatccac
     1741 ccagttactg aatccctcct gcagcccttt ctgccagtcc gcacgctgca catccgattc
     1801 ggcataaaag gcttcctgct ctttcagacg ttcactcaga tactgcgcgt tctgtgccag
     1861 agcctgtctg taaaaatcct cactgatatc cccggtctga tactgagact gaaggtccgc
     1921 atccttctgg cggaaactgt cgcggatctg ctgcaactcc cgcatgcgtt cacggagccg
     1981 ctctccctgc ccgtacccca gcagttccgc ttcatttgat gcacgagcag ccacattatc
     2041 attcttcagg gtctcttccc gggaccgcaa ctgctcccgg attttttgct ggtcaatcag
     2101 ggccgcattg cgcagcagtt cctgcttctg catctccgtc agggttttca gttcgccctg
     2161 cgcagtctgg tatttcagct tcgccagctc tgtattctgc cccgccagtg ccagttgctc
     2221 tttctgctgc ttcagcagcc gggaaaaact gtcttccgct ttttccgtct ctgattttcc
     2281 accccgggat ttgggtttat tcgcctcgtt attgcgccag gcttccaggg cattactgat
     2341 ataacgttgt ctcgcctcct gatacggatc acccacaaaa ccgaggtcat ccgccgcata
     2401 ccccagtcgg acacgctctt tttcttcccc tttcagtctg gacagggcca gctcacgctc
     2461 tgtttttgtc agggcactct gctgtttatc atccagagtg gcctgtggca gccgtaacgg
     2521 cacattcacc agtccctgcc gctgctgaag cagttcatta cccagcccca gcagacggtt
     2581 gaattccgta tgctgaccgt tcataaccag catggactgg tacaccttat tctgctctgc
     2641 cgcctgctga cgaattaacg ccacacgacg gtcttccagc ccggcaagca catcctgaat
     2701 ggactgcgct ttttcctgca tcagtgccag acgggactgc tcaacggcaa gctgctctgt
     2761 tgcctgagca agcccttccg ttacggtctt caccgaggtc agatggttta tcatgaatcc
     2821 gtcaccggtc gtccagcccg ggttcgccag aacatactga tatcctgcga ttttttcctg
     2881 cagggatttc acccgactag cctgttcatc aatcagccgg ttctgctctg tcagcgccgc
     2941 ccgtgttcgt ccttcattat ctgaggcttc aggcaaagac attgacggcg ttttatgcgc
     3001 gatttcatct atcgtcagtg catactggcg tgcagactcc caggcctgct cctgattctg
     3061 gtacagcgtg taccatgctg cagcccccag catcaccagt ccgggtacgc caccaaccag
     3121 ccccagcgca ccgctcatca gacgtgagcc caccgccgtt gtactgttca gcgcattctg
     3181 ggcggcgctt ctggcagcaa tatttctgtt caggcgttcc tgtgtggccg ccagacgggc
     3241 ctctgcagca atctgcatct ccgtcccgcg ggctgccgcc acagcctgct gagcacggta
     3301 cacggctgcc cttgcccgcg ccgtggcaat ctgcgttccc ctgaactgtg cttccgccag
     3361 tgcaacttca ttacgtgcag ccgtcacaag tcctgccgtg gcagacatcg ctccggaggc
     3421 catattgcca aagtaccggg caaccccgac ggcaaccagc gcccccacag ctgttgccac
     3481 attatcaatc tgtccggcaa caccgttcag cacgccggag agcgtttttg tcaccccgca
     3541 ggcctcattc acttcgccca cccaggccat aaaggcgttt tccaccttcg tgatactacc
     3601 ggaaaccgtt tccggcatgg ccgcatattc atcacgtaat atccccagct ggctgattaa
     3661 cgcagggacc actttatccg ctgtcagttt tccgtcatcc gccattgcct tcagatcttt
     3721 acgggccaca cccatccccg cagcaagcgc gcggatcacc cggtcgccat tttcgttaac
     3781 agcattaaat tcttcgccac gcagtacacc ctgtgccagt gcctggctga actgggtgat
     3841 caccgaaccg gattccgcaa ctccagcccc tgacagtttc agtcctgtcg aaatggcctc
     3901 cgtcaccttc agcacatcat cagcactgta accatattca cgcatcgagg cagccgaacg
     3961 ggcaaacagg gccgcattat ccgaaaacgc ggtacctgtt cgctgactga tatccatcag
     4021 cactttctgt gatgacgaga attcatccga tgactgagat gcctgtttca gacgggcatt
     4081 cacggaaccc cactcatcgg ccagcgaaat caggtgtccg gtggcaaagg caccggcaaa
     4141 tgcgccagcc attccgacag cagaaccgcg aatttccgtc aactgactgt tcagttctgc
     4201 aagggcgcgg cgctgttccc gtgcggcagc agcggcatga cgtccgccat tctgcagggt
     4261 ccggtaatat tcactgccca tacgggacgc ccgctggatc tccgactgga atgactgtga
     4321 atttgccgaa attttgagtg tcgttacggg gaagtcatct tcacagggat cttcggtcag
     4381 ttagtattac cgacatccat tcaccaactt accggagata atcgatgtca aaaccccgat
     4441 ggaccattga acagaaaagg cagcacgttg ctgcctggcg cgccagtggt cttacacgtc
     4501 agcaatactg tgaactcaac gatattccct tcacatcact tcgcgaatgg ccgcaggatg
     4561 tcgcaaaagc tgaacgccgg gcaaatgaac cgaccgttct tcccgttcat attgcgccac
     4621 cactgcatgc tgatgtacca cagcccgtca cgaatgagcc agtcacgctc ttccttcccg
     4681 gtggagtacg gatgtgctgt cagccgtcac aacttaccga tgtcttcagg gcactcaaat
     4741 atgctcagtc ctgataatgt cttcatcgca attaaacctg ttgacatgcg ccggggcatc
     4801 gactcactga cgcagtatat acaggatgaa ctccggtcga catggcatga gggagccgcc
     4861 ttcgtctttg ttaacaaagt ccgttcgcgt atcaaagttc tccggtggga taaacacggg
     4921 gtgtggttgt gtacccgccg tctgcacaaa ggcagcttcc gctggccacg tgcaaatgac
     4981 gctgcctggc acctcactcc cgacgagttt aactggctga ttgccggtgt tgactggcag
     5041 caggttaagg gacatgacct gacgaaatgg gtctggcaga atgaacctga actgcgccct
     5101 gaaaacacga aaaatacact gctaactcag tgaaaaataa tgaatatccg tatctggagt
     5161 ggtatactcc cctgtatgga tatctccgct ctcaacacca cgaatgacat cgaaaaactg
     5221 cgtgctatgg cacttgccat ggtacaagaa gtcatgtcgg agaatgccga aaaagagcgg
     5281 gaattactgg agaaaagccg gcgcatccag cttctggaag aaatgctgaa actggttcgt
     5341 caacagcgct tcggaaaaaa atgtgaaacg ctggctggta tgcaacgctc cctattcgaa
     5401 gaggatgttg atgccgatat cgccgcgctt accgcacatc tggataaact gctcccgcaa
     5461 tcccctgaag aagatgaaaa agcgtcccgt tcacgcccga tacgcaaacc cttaccggtt
     5521 catcttccac gggtggaaaa aatgatccag ccggacactg accattgccc tgaatgtgac
     5581 gagccgctgc actatatccg cgatgcggtg agtgaaaagc tggagtatat tcccgctcac
     5641 tttgtggtga accgttatgt ccgtccgcaa tacagttgtc cctgttgcca gaaggtgttc
     5701 agcggtgaaa tgccggcaca tatcctcccg aaaagtgccg ttgagccatc agtcatcgca
     5761 caggtgatca tcaataaata cggtgaccac ctgcctctgt atcgccagca acaggtcttt
     5821 gcccgttcag atgtcgggct gcccgtcagt tcgatggctg acatggttgg cgcggcgggt
     5881 gccgcattat ctcccctggc ggcgttactc catcgcgagt tgataaaccg tccggtggtg
     5941 catgcagatg agactaccct gaagatcctg aacacgaaga aaggcggtaa atcctgctcc
     6001 ggttatctgt gggcatacgt cagtggagaa aggacgggac cgtcagttgt gtgcttcgac
     6061 tgccggaccg gacgtagcca tgagtatcct gaaaactggc ttcagggctg gggcgggacg
     6121 ctggttgtcg acggacataa agcttaccgg actctggcaa acaaagtgcc ggagatcacg
     6181 ctggccggat gctgggccca tgcccgcagg ggcttcgccg acctgtataa aatcagtaaa
     6241 gatccacggg ctgccatagc cgtgaagaaa atcgcggggt tgtaccgtct tgagaagaag
     6301 atcagtagcc gccccgtgga aaaaatccgc cagtggcgac agcgttatgc ccgtccgata
     6361 ctggaagaac tgtggtcatg gcttgaagag caggaaccgc aatgttctcc gggaaaggca
     6421 ttacacaaag ctattgccta tgcgctgtct catcgcgtgg aactgagccg cttcctggaa
     6481 gatggtgcgg tgccgctgga taataatgtg tgtgaacggg ccatcaaaaa cgtggttctg
     6541 ggcagaaaat cgtggctgtt cgccggttcg cagatggcgg gagaacgcgc cgcgcaaata
     6601 atgagcttgc tggaaaccgc gaaacgcaac ggtctggagc cgcatgcctg gttgacagac
     6661 gtcctgatgc gtctgccgga gtggccggag gagcgactgg cagagttgct gcctcttgag
     6721 ggatttacct tctccgggtg agtgatacct gccgtcaggt gttcgtgcac cgggccataa
     6781 cctgcagtcg ggagttgaac tcctgacggc aggaaatgag ccagaccagc aaccacgcgg
     6841 gctgacagcg aataagaacc tgaatcagcc cggagtcatt cccgggtcag tacatcatca
     6901 cctgcaatta atccccgagt cagtacttcg cggcctgacg cgatcacgct actcagtact
     6961 tcagagcccg cctccggtac ctgcctggcg atcgcctctg tgcaacaaaa taaatcaacc
     7021 gttatcaaac cacgagcgtt cgtatgcgcc gccgatgacg cgcgcctgaa aaacgcgtca
     7081 atatgagttc cccggaagct tacaattttg ataatcagtt cacgtaacgt cgccattcac
     7141 ctttctccgg gcgtaaaaaa accgcctcag cggttctcat cattcatgac tgtgctgcaa
     7201 agctcagcgc gtcttccagc gccgcaaacg gatccacctc cggcttatcc tcatcctcgc
     7261 cccagcagag catgacgtcc ttcagtgcaa cattcatccc ctgtgccccg aaaaccgctt
     7321 tcacgatctg tgcattacgg atatccccgc gctcatcacc cagcggggat atcctgtcga
     7381 actccatcca catcatcgcc tcgctcgcac tcaggctgtg gcgcagttcg gataaggtgc
     7441 gccccagacg gagcgcaagt cgcatcagaa agcgaatttc cgggcgggct acttttttct
     7501 ggccgactct gcatcagcga tcagttccag tgcctgacgc agcaaccggg catgtaccgg
     7561 accatagacg gccagcacct gctcacggtc gtccggagtg aacacccgct gcaggtccgt
     7621 atcacacagg acatcgcaga acagcgtcac atccgcttcc aagttacggc gggttttcgc
     7681 caccaccgac agggtatcgt catcctctcc atcaccattg agcacttcct gccacagata
     7741 ccaggcctct gccgaaggct cccgcagcac cacgctgaca ttcccccatt ccggcacctt
     7801 caccgtttta tgacgaaacc ctgacagtct ggccagcgcc agcgttttca gatccttttt
     7861 catgatgacc catcccctta tccggcagct gcgctcactg tcacggtgca ttcaacagac
     7921 gtcacactct gtgctttctc tgccgaatcg gtcaccacgc aggtatattt ccccgcatca
     7981 gcggactgcg cacctggctt actgaaggtg tctgtcgtct gcccgtcaac cggctgacca
     8041 tccttcttcc aggcgtattt atacggcggc attcccccgt tggcactgac tgacattgtc
     8101 agcagcgcac cggtattcac ggtaagtgtc ttatccagat ttttcacaaa cgccagcggt
     8161 accacaaagg acaccggttt gcctttcaga cgcagtgaga acgttgcagc caccacaccg
     8221 ttggtaccgg atgaccaggt gtgctgacgc actt
//
LOCUS       DAJVUY010000172         8202 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.173, whole genome shotgun sequence.
ACCESSION   DAJVUY010000172 DAJVUY010000000
VERSION     DAJVUY010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8202
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.173"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..190
                     /locus_tag="OQQ72_003575"
     CDS             <1..190
                     /locus_tag="OQQ72_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310303.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013173.1"
                     /translation="RQICEMFGRVQRDPFWVKNIMSPSKLREKWDELVIRLGRSPVQR
                     CVNHISEPDTEIPPGFRG"
     gene            231..653
                     /locus_tag="OQQ72_003576"
     CDS             231..653
                     /locus_tag="OQQ72_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS2013174.1"
                     /translation="MAKVFTQEEREKIKGQVVELVRQSGRETLRQLEVKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKEPSAVDPDLIWSLPDG
                     EIRRYDRRQNIICRECRKSEVMQRILAFYQGNARYLLK"
     gene            906..1805
                     /locus_tag="OQQ72_003577"
     CDS             906..1805
                     /locus_tag="OQQ72_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMEK domain-containing protein"
                     /protein_id="HCS2013175.1"
                     /translation="MIDPLIRNLQSDIALLQLYIAQRKQAGFHDMERIIESLTIFMFR
                     ALKMGELVNMNQIKVNFPAIDLADNKNMIAVQVTTNASPAKIKKTIESFEETNEIGES
                     LKDKYSTLYIFGFCKASRYLTPSYCKIIDPSYFVNELCDKADEDMVQDMIDAIRRHHD
                     YTSLHPWSDKDSLEIILNIINRNAIKHRMSCEGSLSDMLTGLKEINEVITKGTIQRKQ
                     RSKSISDFKDQSMVKFMRGVMDDLSVIQAIVNKSKVNQGDMVYISHEDMINIDKLKAK
                     IASDSSEIARLNNIDITLNVVDL"
     gene            complement(2120..2773)
                     /locus_tag="OQQ72_003578"
     CDS             complement(2120..2773)
                     /locus_tag="OQQ72_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HCS2013176.1"
                     /translation="MNYKINGINIRSENAAKPHTMPSNYLCKQIESTNKNGNALDFGC
                     GKLRYSEQLVNKFETVTFLDSRRQLERVQIIRGVQTTIPDYVINNYKNANIVSYENID
                     KITNHYDFILCANVLSAIPCESTIHKVLSAIRELLKSDGEALIVNQYKSSYFKRYESG
                     IKHLHGYIYQNSRNAFYYGLLDVDTVSKICSDNNLEIIKSWSKAGSSYVVVGKHIHI"
     gene            complement(2790..3482)
                     /locus_tag="OQQ72_003579"
                     /pseudo
     CDS             complement(2790..3482)
                     /locus_tag="OQQ72_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000892866.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4225..4380
                     /gene="hokD"
                     /locus_tag="OQQ72_003580"
     CDS             4225..4380
                     /gene="hokD"
                     /locus_tag="OQQ72_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS2013177.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     TAYEPEE"
     gene            4597..4848
                     /locus_tag="OQQ72_003581"
     CDS             4597..4848
                     /locus_tag="OQQ72_003581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013178.1"
                     /translation="MMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALIN
                     FVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE"
     gene            4915..5193
                     /locus_tag="OQQ72_003582"
     CDS             4915..5193
                     /locus_tag="OQQ72_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013179.1"
                     /translation="MARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPPCTEEQADW
                     LIQCYRRRGCEVKKALSLDYRHWIISVRLPYSERPPRPSRTFQQRIWR"
     gene            5195..6241
                     /locus_tag="OQQ72_003583"
     CDS             5195..6241
                     /locus_tag="OQQ72_003583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS2013180.1"
                     /translation="MRVLLRPVLVPELGLVIVKPGRESMPVFHNTRVLVEPEPKSMRN
                     LSSGVVPAVRQPLAEDKSLLPFFSDERVIRAAGGAGALSDWLLRHVKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLGQLAHQNLSAWMIDVILHAMNGSQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLAPLSHAHQQNPPQEETVVSIAVDPESPESFMKRPKRRRWVNEKYTRWVKTQPCA
                     CCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLI
                     FRFLDHAFATGVLG"
     gene            6254..6628
                     /locus_tag="OQQ72_003584"
     CDS             6254..6628
                     /locus_tag="OQQ72_003584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HCS2013181.1"
                     /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ
                     RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQ
                     RVPGGRLGVKIYPIMLEGQVKK"
     gene            6625..7446
                     /locus_tag="OQQ72_003585"
     CDS             6625..7446
                     /locus_tag="OQQ72_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HCS2013182.1"
                     /translation="MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNR
                     AEMGFSAFLGKMGISMNDRERATELLTEYALSRCDRVAALRKLPAEIKPAVMRIMASY
                     AFEDYARSAASKKQCSCCHGKKFIESEVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEW
                     KKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGC
                     ERLPSTEAFNAICKVTSAITLDTWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR"
     gene            7673..7913
                     /locus_tag="OQQ72_003586"
                     /pseudo
     CDS             7673..7913
                     /locus_tag="OQQ72_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8021..>8202
                     /locus_tag="OQQ72_003587"
     CDS             8021..>8202
                     /locus_tag="OQQ72_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001575625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS2013183.1"
                     /translation="MLNTVKISSCELINADCLEFIRSLPENSVDLIVTDPPYFKVKPE
                     GWDNQWKGDDDYLKWL"
BASE COUNT         2356 a         1646 c         1930 g         2270 t
ORIGIN      
        1 cagacaaatt tgtgaaatgt ttggtcgggt acagcgggat ccgttctggg taaaaaacat
       61 catgagcccg tcaaagctcc gcgaaaaatg ggacgaactg gtcatccgcc tggggcgttc
      121 acctgtacag cgttgtgtta atcatatttc tgaaccggat acagaaattc cgcctggttt
      181 cagaggataa gttttgattt caggtcatga ggtaatttta agggggactt gtggcaaaag
      241 tttttacaca agaagagcgg gaaaaaatta aagggcaggt ggtggaactc gtgcgccaga
      301 gcggtcgtga gacgttacgg caactggaag tcaagacagg tgcgacaaga tatctgatga
      361 gcgttctcgc aagagagctg gttgccagcg gcgatgtata caactctggt tacgggttat
      421 tcccgtctga acaggcgcgt aaggactggc aaaatgcccg taaaaagctc tcaagggcaa
      481 agctgaagga accatctgcg gttgatccgg accttatctg gtcattacct gacggagaaa
      541 tacgtcgcta cgacaggcgt cagaacataa tctgtcgcga gtgccggaag agtgaagtta
      601 tgcagcgcat actagcattc tatcagggaa atgctcgata tttattgaag tgatgagatt
      661 aaagtttatt agttcagata ttgattggct cttttgtgga gtagggtaga gttagtgtgt
      721 ttgtctgctt ggtgccagca gcggatatgt ttaacaacag aaagcattca gcatggttag
      781 tggatttgca aagtggatta ggatttgaga aactttgatg aagttgtaaa gcttgtttct
      841 ataaaaatag aaatttaact aatagttaaa cacacctcca gcttcattga aaaggattat
      901 tagctatgat tgatccactt attagaaact tacagagtga tattgcacta ctccagcttt
      961 atatcgcgca acgcaaacag gcaggctttc atgacatgga aagaataatt gagtcattga
     1021 ccatctttat gtttcgcgcg ctgaaaatgg gtgaactggt aaacatgaat cagattaaag
     1081 ttaattttcc cgccattgat ttagctgata ataaaaacat gatagcagtt caagttacta
     1141 cgaatgcaag tccagcaaaa attaaaaaaa ctatcgaatc ttttgaggaa acaaatgaaa
     1201 taggagagag tctgaaagat aaatactcta ctttatatat ttttggtttt tgtaaagcct
     1261 caagatacct aactccaagt tattgtaaaa taatcgaccc cagctatttc gtgaatgaac
     1321 tttgcgataa agcagatgaa gatatggtcc aggatatgat tgacgccatt cgacgccatc
     1381 atgattatac atcattacat ccatggagtg ataaagattc actcgaaatt atactcaata
     1441 ttattaatcg caatgcaata aaacatcgga tgagttgcga aggcagtctg tctgatatgc
     1501 tcactggttt aaaagaaatt aatgaagtaa ttacaaaagg aacaattcaa cgtaagcaac
     1561 gttcaaaatc gatatctgac ttcaaagatc aaagcatggt gaaatttatg agaggtgtaa
     1621 tggatgattt gtctgttatt caagccatag tgaacaaatc taaagttaac caaggtgata
     1681 tggtttatat aagccatgaa gatatgatta atattgataa attaaaagct aaaatagcaa
     1741 gtgattcatc agagattgca aggctaaata atattgatat aacactaaat gttgttgatt
     1801 tataattgtc gatttagcaa aacagagaat gctttgaaag tttcaccgag aaatatttat
     1861 tgtgaacctc cttattgttt atcgactttt actctccgct cattgcagta ctgtcggaga
     1921 aggctactat gtacaagaag cagctaacat aagcgagcat cactattgat attaggaaga
     1981 gtatataaaa acttcatgct gaaccttaca aaagtagata aaccggcaat ggcctaagtg
     2041 gcagggtcat gttgatccgg cactgccgag ctaataatta acaagcaaat cactctttct
     2101 aataatttgt tgaaataaac taaatatgta tatgtttacc aacaaccaca tatgaactac
     2161 ctgctttgct ccatgatttt attatttcta aattattatc tgagcatatt ttacttacag
     2221 tatccacatc taataaacca tagtagaaag cattacgaga gttttggtat atatacccat
     2281 gcaaatgttt aataccgctc tcgtacctct tgaaataaga acttttgtat tgattgacaa
     2341 tcagtgcttc accatcactc tttaataatt ctctaatcgc actgaggact ttgtgaattg
     2401 tggattcaca tggaattgcg gaaagcacgt ttgcgcaaag tatgaaatca taatgatttg
     2461 ttattttatc tatattttca taagaaacaa tattagcatt cttatagtta tttatcacgt
     2521 aatctggaat cgtggtttgt acacctctga taatttgcac tctttctagt tgtcttctgg
     2581 aatctaaaaa tgtcacagtt tcaaatttat ttactaattg ttctgaatat ctaagttttc
     2641 cacatccaaa atcaagggca ttgccatttt tattagtgct ttcaatctgt ttacagagat
     2701 agttagatgg catagtgtgc ggtttcgctg cattttctga acgtatgttt attccattta
     2761 ttttgtaatt caaaatcaac ctcgtttaaa aaaatattgt tattgttaaa gaattctttt
     2821 attttgctat caggtatttg tcttacttgg ctttctgttc ttggtttaac tgatgctatg
     2881 aaaataagga agtcaaatgc gacaagagaa ataatccaca accaaagatt aattaaagag
     2941 ccagtaacag agaatatatt tgttaatttg gcgatactta ttattaaaat agtaacaaat
     3001 gcgattactg tatgttcaaa gaaaacccaa aagtaataaa ctttgttcca gaaaagttca
     3061 acgtaatgtt tgtcttttaa ctctttaact tctgggtaat acagtttact cattaccttg
     3121 tgagattcat cagtagttaa ttttctcgta acgcctgcaa tttttgctaa tggtttaata
     3181 attaaatgac tatcccacat cttccttatt ccaataattt ttgctacatt attatgtaga
     3241 tctaaagctc cactaattac tgaccaaaaa actgaagatg caattggtaa tatgccaaag
     3301 gttaatatcc atttaataaa ttcctcgtag tctttaacgg gggggatata cttggcatta
     3361 atgccaacca atggcatgta gccataaatg actaatgata ggtaaaatat aaatgtagta
     3421 ataaaagtcg ccttatggag cataggcaac atttcattat aactctttgg tggttctaac
     3481 attttactct ccaaacattc aaaaaaaagc taatcttcta taataacgaa attcagctgg
     3541 cacaattaaa gattaattgc caccaatttc ttgattttat aattttatct aaatgttttt
     3601 gattaatcta gtcctaaaag aaacctactg cataaatatt tatgctgatg acccactccc
     3661 tgttcgttaa cacatagcaa cgttagtaat gcatcctaag tgatcaatat ttttgctagc
     3721 ttcatctgct cgctcaaagg gaactataat gttggcttgc gtgtgacttg gcatgtttaa
     3781 agaagtgctg gtggtgactg gttgctgttt tccatttcca cagaacaaaa tcatagaaac
     3841 tatacccagt agttgtattg aatcactgac gagacagcct catatttatc aggactggtg
     3901 tacgtccaat acaggaggtt gtggtgctgg ttctcaaatg tgcgctggct attgctgctg
     3961 taatggcaat ttattgtctt gctgttgttc ttatggatca cctttctgat tgatttcata
     4021 ttggcgaggt aacggtagtt aagtagaatt gctgcgggtg cttgaggcta tctgcctcgg
     4081 gcatcaacac caaaggcaga tagagaaaag ccccagttaa cattacgcgt ccggcaagac
     4141 gcttaacatt aatctgaggc catatctatg ctctacacac gtaggttagc ctcttacgtg
     4201 ccgaaaggca aggagaagca ggctatgaag cagcaaaagg cgatgctaat cgccctgatc
     4261 gtcatctgtt taaccgtcat agtgacggca ctggtaacga ggaaagacct ctgcgaggta
     4321 cgaatccgaa ccggccagac ggaggtcgct gtcttcacag cttacgaacc tgaggagtaa
     4381 gagacccggc gagggagaaa tccctcgcca cctctgatgt ggcaggcatc ctcaacgcac
     4441 ccgcacttaa cccgcttcgg cgggtttttg tttttatttt caacgcgttt gaagttctgg
     4501 acggtgccgg aatagaatca aaaatactta agtagcgcgc agggataaga gggatggtcc
     4561 cttaaagggg agagctaatt atccggaagg attctgatga tgaacatcga agaactgcgt
     4621 aaaatttttt gtgaagatgg cctctatgct gtgtgcgttg aaaatggaaa tattgttagt
     4681 cattaccgca ttgtgtgttt gcaaaaaaat ggggctgcgt taattaattt tgtggatgcc
     4741 cgagtgacgg acggatttat cttgcgcgac ggtgagtttg tcacttcatt acaggcattg
     4801 aaagagatcg gaataaaagc tggcttttct gctttttcag aagaataaac tcatctacaa
     4861 tcttgcgcgg ggctgaactc ccgctgagta acaccgtgcc accggagaaa accgatggca
     4921 cgcaacgcaa aatattacaa tcatgataat tcgaccgttc ttgcccacac gcacgagcgg
     4981 tattctcatg catttaagtc agactggtac cagcatcccc catgcactga agaacaggcc
     5041 gattggctca ttcagtgtta ccgcaggcgc ggatgcgagg ttaaaaaagc ccttagcctc
     5101 gactaccgtc actggataat ctccgtcagg ctcccttact ccgaacggcc accgcgtccg
     5161 tcccgcacat tccagcaacg tatctggagg taacgtgcgg gtattacttc gacctgttct
     5221 ggtaccggaa ctcgggctgg tgatcgttaa gccgggccgt gaatccatgc cggtattcca
     5281 caatacccgg gtactggtgg agccggaacc gaaaagcatg cgtaatctgt cgtccggggt
     5341 cgttcctgcc gttcgccagc cgctggcgga ggataaatca ttactgccat ttttcagcga
     5401 cgaacgagtg attcgtgctg ctggtggcgc tggcgcattg tctgactggt tactgcgcca
     5461 tgttaaatcc tgccagtggc cacacggcga ttatcaccac agtgaaaccg tcattcaccg
     5521 ttatggtacc ggcgcaatgg tgttgtgctg gcactgcgac aaccagctgc gcgaccagac
     5581 ctccgaatca ctcgggcaac ttgctcacca aaacctgtct gcatggatga ttgacgtcat
     5641 actccatgca atgaatggct cgcaggaacg ggaattatcg ctggctgaat tatcctggtg
     5701 ggcggtccgc aatcaggtgg cggacgcgct accggaagcg gtattacgtc gttcgctggg
     5761 gttgcgtgcg gaaaaaatcc gctcaatgta ccgtgaaagc gacatcgtac cgggagagca
     5821 gaccgccacc agcatactga agcagcgcac aaaaaatctt gcgccgctgt ctcacgccca
     5881 ccagcaaaac ccgccacagg aagagacggt ggtcagcatt gccgttgatc ctgagtctcc
     5941 ggaatctttc atgaaacgac ctaaacgtcg ccgctgggtt aacgagaaat acacacgctg
     6001 ggtgaagaca cagccgtgtg cgtgttgtgg taagccagcc gacgatcccc atcacctgat
     6061 tggtcatggt cagggcggaa tggggacaaa atctcacgat attttcacgc taccgctgtg
     6121 tcgggagcat cacaacgagc ttcatgcgga tcctctggcg ttcgaagaaa agcatggttc
     6181 tcaggttgat ttaatttttc gttttcttga tcacgccttt gcaactggcg tgcttgggta
     6241 aaagaggtga ctgatgctca tagatttggt tttaccttac ccgccgacgg tgaacactta
     6301 ctggcgacgc cgtggcagca catattttat ctcggaggag ggaaagcgtt atcgccgggc
     6361 tgtggcgctt attgttcgcc agcagcggct gaaattaagc ctgtccggaa ggctggcgat
     6421 aaaggtgatt gcagagccac cggataagcg tcgtcgcgac ctggacaata ttctgaaagc
     6481 accactggat gcgctgacgc atgccggact tctcatagac gacgagcagt ttgatgaaat
     6541 caatattgtg cgcggtcagc gcgttcctgg ggggcggctg ggcgtgaaga tttaccccat
     6601 aatgcttgaa gggcaggtca aaaaatgaaa ctggaagatt taccgaaata ctactcccca
     6661 aaatcccccg gcctgactga tgcatcggcc tcaacgtcga aagatgcgct gagtatcact
     6721 gatgtgatgg ccgcgcaggg catgacacag aatcgggctg agatggggtt ttctgcgttc
     6781 cttgggaaaa tgggcattag tatgaatgac agagagcggg caacagaatt gctgacagaa
     6841 tatgcactca gtcggtgtga tcgcgtggcg gcgttaagaa aactcccggc agaaataaaa
     6901 ccggcagtga tgcgtattat ggcttcgtat gcgtttgaag attatgcccg tagcgcggcg
     6961 agcaaaaaac agtgctcctg ctgtcacgga aaaaaattta ttgaaagcga ggtttttaca
     7021 aacaagatcc agtatccgga tggtaagccg ccggtatggg caaagtgtac gaaaggtgtg
     7081 tatccgtctt actgggaaga atggaaaaaa gtcagggagg tggtaaaagt tgcctgtccg
     7141 gagtgtggcg gaaagggtga ggtttccacc gcctgtaagg attgccgtgg gcgtggtgtc
     7201 gccattcatc gtgaagagtc ggtaaaacgt ggtatgcctg ttatcagaga ctgccagcgt
     7261 tgtggtggtc gtggctgtga aagactacca tcaacggagg catttaatgc catatgcaaa
     7321 gtgacgagtg ctatcacgct tgatacgtgg aaaaaatcag tgaaacgctt ttacgatacg
     7381 ttggtggttc ggtttgacat tgaagaggca tgggcggagc ggcagttaaa gagggtaacg
     7441 cgatagtgtt gttgattttt cccgaatctg tggtaaattt gctctaacga tgggcgtttt
     7501 atgcctgacg ttagaagatt ttttacaccc cgccgcctgg cgggtttttt atgactgaaa
     7561 tcgcgtcagt atagtaaacg cgctggtggc ggtgaatacc tgtctttcag cttgctggct
     7621 ttttcgacaa gagttattgg tgtgtcacgt taaccggaaa agggaaaaag acatgctaaa
     7681 acagcaggat atgacagaaa ccgccagagt ggtgtttaat gaattaagcg ttaccgaacc
     7741 ggcgacagtc ggggagatag cgcagaatac ttacctttca cgcgaacgct gccagttaat
     7801 actgacccag ctggttatgg cggatctggc agactatcag ttcggttgtt acagacgcct
     7861 tccgcagtga aggctttttt atttgtggta aatgggcggc tggtgggtgt taggggcacc
     7921 caccagccat ctgctcatgc gttgggttca caagcaaacc tcaggcccac tgctttgcgc
     7981 aaaagcagaa tgagcctatc agagacaggc ttaatgatcc atgcttaata ctgtaaaaat
     8041 atccagttgt gagttaatca acgccgactg cctggaattt atccggtcgt tacccgaaaa
     8101 ttctgttgac ctgatagtca cggacccgcc gtactttaaa gtgaagcctg agggctggga
     8161 taaccagtgg aagggcgacg atgattacct gaagtggctg ga
//
LOCUS       DAJVUY010000173         8164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.174, whole genome shotgun sequence.
ACCESSION   DAJVUY010000173 DAJVUY010000000
VERSION     DAJVUY010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8164
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.174"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..783)
                     /locus_tag="OQQ72_003588"
     CDS             complement(<1..783)
                     /locus_tag="OQQ72_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS2013184.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTR"
     gene            893..1072
                     /locus_tag="OQQ72_003589"
     CDS             893..1072
                     /locus_tag="OQQ72_003589"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013185.1"
                     /translation="MWLAENEGVKFWLNVLTELKKCGWSPYLFIKPVVCPPLHHFSAL
                     IEILSMVVNSTNPVR"
     gene            1262..1351
                     /locus_tag="OQQ72_003590"
                     /pseudo
     CDS             1262..1351
                     /locus_tag="OQQ72_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1375..5889
                     /locus_tag="OQQ72_003591"
                     /pseudo
     CDS             1375..5889
                     /locus_tag="OQQ72_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000536590.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
     gene            5890..7539
                     /locus_tag="OQQ72_003592"
     CDS             5890..7539
                     /locus_tag="OQQ72_003592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfaQ family protein"
                     /protein_id="HCS2013186.1"
                     /translation="MNWRRIVWLLALVTQPTLAEETPLQLALRGAQHDQLYQLSSSGV
                     TTVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD
                     TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA
                     TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD
                     GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST
                     TAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE
                     AKSTPPEAAKAMTVAIHTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT
                     QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS
                     TCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN
                     FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD"
     gene            7544..>8164
                     /locus_tag="OQQ72_003593"
     CDS             7544..>8164
                     /locus_tag="OQQ72_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013187.1"
                     /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF
                     SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKIQQGRLVVNGASMPQRVESDGSF
                     ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV
                     VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVY"
BASE COUNT         1995 a         1964 c         2289 g         1916 t
ORIGIN      
        1 gcgagtcgac aatggattgt tataaatatt aacatctgca taaatgtgca gattcatgat
       61 actgtctggc aatgtgttca gctgattgtt agggatatat agtgattgca gacgttgtgg
      121 aagttcgggc agtctgtgta gttggttttc cccaacgttt aaaagcctca gattttgagg
      181 aaggggcggt agctcttgta atctgttatc aaaagcactt agttcctgta gttcacatgg
      241 taattctggt aaggcagtaa gctggttgtt gccaacagaa agtttttgta gagccggggg
      301 aagatcaggt agcgtctcca ggctattgag aagggctgag agtgactgca aggaagatgg
      361 aagagaaggt aaacatgtta aaactctgtt aagtgaaaca tcaagagcga ccaggtgagg
      421 cggaagagcc gggagcctgc tcagtctgtt atcgctggct ttaagtacag ttaaggacgg
      481 agggagttct ggcagagagc gtagctcatt gctagagatg ttaagttctt gtatgtgcgg
      541 gggcaggtat gggagagagc gtaatctgag taaacttaaa ttgagggctg gctcttgaaa
      601 agccagacat attttcagta atcgaactgc ctgtgttcgg tcttctgttg cagcaccttc
      661 cttggcccag ttatcccaga tgcggtgata atccgtgata ttttgctctt ctacggataa
      721 acgggatata catcctaaac cacaaaagga gcggaaaaaa gaaggattgt gggcaggttt
      781 catttattat tgatcctcat tgtttatata ttaatatgtt cgtgcaaatg gagtgaggat
      841 tctttaaaaa aacgctcctg taaatagtta agaacaggaa gaactgttgg ggatgtggct
      901 ggccgaaaat gaaggggtga agttctggct caatgtgctg actgaactga aaaaatgcgg
      961 ttggtcgccc taccttttca tcaagccagt agtctgccca ccactgcatc atttctctgc
     1021 gcttatcgag atactgagca tggttgtaaa ttcaactaac ccagtgcgtt gacaaaaaat
     1081 tagcgcaaga agacaaaaaa tcaccttgcg ctaatgctct gtatcaggtc actaatacca
     1141 gctaagtagt tgattcatag tgactgcata tgttgtgctt tgtcgcattt tgtagtctat
     1201 tatttaatct gtaacaacga taatacaatg aattttaatt ggtttttgtg attttgtcct
     1261 tcttctgaca tggaaggaca cccgatggat acccaacgat tccaatccca atttcattgg
     1321 catttatcgt ttaaattttc tggcgcgata gcagcgtgct tgtctctgtc tcttgtggga
     1381 acagggcttg ctaatgctga tgattcgctt ccttccagta actatgcgcc gcccgccggg
     1441 ggaacattct ttttgcttgc tgacagcagt tttagcagca gtgaagaggc gaaagtgcga
     1501 ctggaagcgc cggggcgtga ttatcggcgc tatcagatgg aagagtacgg cggcgtggac
     1561 gttcgcctgt atcgtattcc tgacccgatg gcatttttgc gccagcagaa aaacctgcat
     1621 cgcattgtgg tgcaaccgca atatctgggc gacgggctga acaatacgct gacctggctg
     1681 tgggataact ggtacggcaa atctcgccgc gtaatgcagc gtactttctc ttctcagtca
     1741 cggcagaatg tgactcaggc attacccgaa ttacatctcg gcaatgccat tattaaacct
     1801 tcccgttatg tacagaacaa ccagttttcc ccgctgaaaa aatatccctt ggtggaacag
     1861 ttccgttatc cactatggca ggctaaaccg gtcgagccgc agcaaggggt aaaactggaa
     1921 ggcgcatcca gcaatttcat ctcgccgcag ccgggtaaca tttatattcc tctcggccaa
     1981 caagagccgg gactgtacct cgtcgaggcg atggttggtg ggtatcgggc gacgacggtg
     2041 gtgtttgttt ccgataccgt ggctcttagc aaagtgtcag gcaacgagct tctggtgtgg
     2101 accgcgggta aaaaacaggg tgaagcgaag cccggctcag agatcttgtg gactgacggt
     2161 cttggcgtga tgacccgcgg tgtgaccgat gacagcggta ccttgcagtt acaacatata
     2221 tcgccagaac gttcatacat tctgggtaag gatgctgaag gcggcgtttt tgtctccgag
     2281 aacttcttct acgaaagcga aatctacaac acccgcttgt atatttttac cgatcgcccg
     2341 ctatatcgcg caggcgatcg tgtcgatgtt aaagtgatgg gccgcgagtt ccacgatccg
     2401 ttgcattcat cccccatcgt cagcgccccg gcgaagcttt cggtgctgga cgctaacggc
     2461 agtctgttgc aaaccgtcga tgtcacgctg gatgcgcgca atggcgggca gggaagtttc
     2521 cgcctgccag aaaatgccgt tgccggaggt tatgagttac gtcttgctta ccgcaatcag
     2581 gtctatagca gcagttttcg cgtggcaaac tacatcaagc cacatttcga gattggttta
     2641 gctctcgaca aaaaagagtt caaaactggc gaagcggtca gcggcaaact gcaactgctc
     2701 tacccggatg gcgagccggt aaaaaatgcc cgcgtgcagt taagtttgcg cgctcagcaa
     2761 ttatcaatgg tcggtaacga tttgcgttat gccggacgtt tccccgtgtc gctggaaggc
     2821 agcgaaacgg tgtccgacgc cagcggtcat gtggcgttaa atctccccgc cgccgataaa
     2881 ccgagccgtt atttgttaac cgtctccgcc agtgacggcg cggcgtatcg tgtcaccacc
     2941 accaaagaga tcctcattga acgcggtctg gcgcattact cattaagtac tgccgcacaa
     3001 tacagtaata gcggcgagtc ggttgtgttc cgttatgccg cgctggaatc ttcaaaacag
     3061 gttcctgtta cgtatgaatg gttgcgtctc gaagaccgca cgagccatag cggagagcta
     3121 ccgtcaggcg gcaaatcctt taccgtcaat ttcgctaaac ctggcaacta caatctgaca
     3181 ttacgcgata aagacggctt aattctcgct gggttaagtt atgccgtcag cggtaagggc
     3241 agcacggcgc atacgggtac ggtagatatc gtggcggata aaacgctgta ccagccaggc
     3301 gaaaccgcga agatgctgat tacctttccg gagccaattg atgaagcatt attgacgctg
     3361 gaacgcgatc gcgtggaaca gcagtcgctg ctttcgcatc cggcaaactg gctaacgcta
     3421 caacgtttaa acgataccca gtatgaagcc cgggttccag tgagcaattc ctttgcgcct
     3481 aacatcactt tttcggtgct gtatacccgt aatggtcagt acagttttca gaacgccggg
     3541 atcaaagttg ccgttcctca gcttgatatc cgggtgaaaa cggacaaaac ccattaccag
     3601 ccaggtgaac tggtcaatgt cgaattaacc tcgtcgctga aaggtaaacc tgtttctgcg
     3661 cagctaacgg taggcgtggt cgatgaaatg atctacgcgc tgcaaccaga aatcgcgccg
     3721 aatatcggca aatttttcta tccgctgggg cgtaacaatg tgcgtaccag ctccagtctg
     3781 tcgtttatca gctacgacca ggcgctctcc agcgagccgg ttgcgcctgg cgcaactaac
     3841 cgcagcgagc ggcgagtaaa aatgcttgaa cgtccacggc gtgaagaggt ggataccgcg
     3901 gcatggatgc cgtcactcac aaccgataaa caaggcaaag cgtatttcac gttcctgatg
     3961 cctgattcgt taacccgctg gcgtatcacc gcgcgtggga tgaacggcga cgggctggtc
     4021 gggcaggggc gtgcttatct gcgttcggaa aaaaatctct acatgaagtg gagtatgcca
     4081 acggtgtatc gcgtgggcga caaaccggcg gcaggactgt ttatcttcag tcagcaggat
     4141 aacgaaccgg tggcgctggt gactaaattt gcaggcgctg agatgcgcca gacgctgacg
     4201 ctgcacaaag gggcgaatta tatttcgctg gcgcagaata ttcagcaatc tggcttgtta
     4261 agtgcagaac tgcaacaaaa tgggcaagtg caggacagca ttagcacaaa actgtctttt
     4321 gtggacaaca gcaggcccgt tgaacagcag aaaaatgtca tgctcggcgg tggcgagaac
     4381 gcgctgatgt tgcccgagca ggcgagtaat atccggctac aaagtagtga aacgccgcag
     4441 gagattttcc gcaacaatct tgatgcgtta gtcgatgaac cgtggggtgg ggtgatcaac
     4501 accggtagcc gtctgatccc gctcagtctc gcctggcgtt cgcttgccga tcatcaaagt
     4561 gccgccgcta acgacattcg tcagatgatt caggataacc gtctgcggct gatgcaactg
     4621 gcggggcccg gagcgcgctt tacctggtgg ggtgaagatg gcaatggtga cgccttcctt
     4681 acggcatggg catggtacgc cgactggcag gccagctagg cgctcggcgt aacgcaacaa
     4741 ccggaatact ggcagcatat gctcgacagt tatgccgagc aggcggataa catgccgtta
     4801 ttgcatcggg cgctggtgct ggcgtgggca caggagatga atctgccgtg caaaacgttg
     4861 ttgaaagggt tggatgaagc tatcgcccgg cgcggaacta aagatgaaga tttctctgag
     4921 gaagacatcc gcgatatcaa tgacagcctg atcctcgata caccggaatc tccactggca
     4981 gatgcggtgg caaacgtctt aaccatgacg ttgctgaaaa aagcgcagtt gaagtccacg
     5041 gtgatgccac aggttcagca atatgcgtgg gataaagcgg caaacagcaa tcagccgctg
     5101 gcgcacacgg ttgtgctgct caatagcggt ggtgacgcta cccagacggc cgctatttta
     5161 agtggtttga ccgctgagca atccactatt gagcgcgcgc tggccatgaa ctggctggcg
     5221 aaatatatgg cgacaatgcc tccagttgtt ttgcctgcgc ctgcgggcgc atgggctaaa
     5281 cataagttaa ctggaggggg cgaatactgg cgttgggttg gtcagggcgt gccggacatt
     5341 ctctcttttg gtgacgaatt atcgccgcaa aatgtgcagg tccgctggcg tgagccggca
     5401 aaaatggctc aacaaagtaa cattccggtg accgttgaac gccagttgta tcggcttatc
     5461 cctggtgaag aagagatgag ctttattctg caaccggtga ccagcaatga gattgacagc
     5521 gatgcgctgt atctcgatga catcacgctt accagcgagc aggatgcagt tctgcgctac
     5581 ggtcaggtgg aagtaccgct gccaccggga gccgacgttg agcgcacaac atggggcatt
     5641 tcggtcaata aacccaacgc cgcgaaacag caggggcaat tgctggaaaa agcgcgaaat
     5701 gaaatgggcg aactggccta tatggtgccg gtgaaagaac tgacgggaac ggtcactttc
     5761 cgccatttgc tgcgcttctc gcaaaaaggg caattcgttc tgcctcctgc tcgttatgtg
     5821 cgttcctatg cacctgcaca gcaaagtgtt gcggcaggga gtgaatggac cgggatgcag
     5881 gtgaaataag tgaactggcg cagaatcgtc tggctattgg cgttggttac tcagccaacg
     5941 cttgcggagg agacgccgtt acaactggca ctgcgtggtg cgcagcacga tcaactgtat
     6001 cagctgtcgt catcaggcgt gaccacagtc tcagcattac ctgactcgct caccacgccg
     6061 ttagggagtt tgtggaaact gtatgtttac gcctggctgg aggataccca tcaaccggag
     6121 cagccctacc agtgtcgcgg aaactccccg gaagaggttt attgttgtca ggctggggag
     6181 agcataacgc gcgataccgc gctggtacgt tcctgtgggc tctattttgc gccgcagcgg
     6241 ttgcatattg gcgcagatgt gtgggggcaa tactggcaac agcgtcaggc gcctgcgtgg
     6301 ttagcgtctc ttactacgct gaagccagaa acctcggtaa cggttaaatc gctgcttgat
     6361 tcattagcga cgttacctgc gcaaaacaaa gctcaggaag tcttactgga tgtggtgctg
     6421 gacgaggcga aaatcggtgt cgcatccatg ctcggtagtc gggtacgggt gaaaacctgg
     6481 agctggtttg ccgatgataa acaggaaatc cgtcagggtg gttttgccgg ctggttaacc
     6541 gatggtacac cgctgtgggt tactggcagt ggcaccagca aaacggtact aacccgttat
     6601 gcgacagtgc ttaatcgggt tttgccagtg ccgacgcagg ttgccagtgg gcaatgtgta
     6661 gaggtggagc tgtttgcccg ctatccgctg aagaaaatca cagcggaaaa gagtacgacg
     6721 gcagtaaaac ccggcgtact taatgggcgc tatcgtgtga cgtttactaa tggtaaccac
     6781 attacgtttg tcagccacgg tgagacgacc ttactgagcg aaaagggcaa actgaaattg
     6841 cagtcgcatc tcgatcgtga agagtacgtt gccagagttc tggatcgcga ggcgaaaagt
     6901 acgccccctg aggcagcgaa agccatgacc gtggcgattc acactttttt acagcaaaac
     6961 gccaatcggg aaggcgattg cctgaccatc cccgacagca gcgccacgca gcgtgtttct
     7021 gcttcgccag cgaccacggg ggcgcgaacg atgaccgcct ggacgcagga tctcatctat
     7081 gcaggcgatc cggttcatta tcatggcagt cgagctaccg aagggacact ttcctggcgg
     7141 caagccacgg cccaggcggg gcagggagag cgttacgacc agatactcgc gtttgcttat
     7201 cccgacaaca gccttagccg ctggggagcg ccacgctcaa cctgccagtt attacccaaa
     7261 gcgaaagcct ggctggcgaa aaaaatgccg cagtggcggc gtatattaca aggcgagacg
     7321 gggtacaacg aaccagacgt gtttgcggtc tgtcgtttag tctcaggttt cccctatacc
     7381 gatcggcagc agaaacggct gtttattcgt aacttcttta cgcttcagga tcggctggat
     7441 ttaacccatg agtatctgca cctggccttt gatggttatc ccaccgggct tgatgagaac
     7501 tatatcgaaa cgctgacccg acaattatta atggactaat gctatgcgaa agatttttct
     7561 tccgttgtta ctggtggcac tttcgcctgt cgctcacagt gaaggtgtgc aggaagtcga
     7621 gattgacgca ccgctctctg gctggcatcc ggcagagggc gaagatgcca gtttttcaca
     7681 atcgatcaat tacccggcgt cgtccgtcaa catggcagat gatcaaaata tctcagcgca
     7741 gatccgcggc aaaataaaga attatgctgc ggcgggtaaa attcagcagg gccggctggt
     7801 ggtcaacggt gccagtatgc cgcagagagt tgaatccgat ggttcatttg cacgccctta
     7861 tattttcact gaaggcagca acagcgtgca ggtcatcagc ccggatgggc aaagccgaca
     7921 aaaaatgcag ttttactcaa cgccgggtac aggaacgatt cgtgcacgtt tacggctggt
     7981 tctctcgtgg gatacggaca ataccgatct cgatctccat gttgtcacgc ccgatggcga
     8041 acacgcctgg tacggtaaca ccgtgctgaa aaacagtggt gcactggata tggatgtcac
     8101 gacggggtac ggacccgaga ttttcgccat gccagcgcca gttcacggac gctatcaggt
     8161 gtat
//
LOCUS       DAJVUY010000174         8124 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.175, whole genome shotgun sequence.
ACCESSION   DAJVUY010000174 DAJVUY010000000
VERSION     DAJVUY010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8124
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.175"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            159..952
                     /gene="dkgB"
                     /locus_tag="OQQ72_003594"
                     /pseudo
     CDS             159..952
                     /gene="dkgB"
                     /locus_tag="OQQ72_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414743.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
     gene            complement(949..1863)
                     /locus_tag="OQQ72_003595"
     CDS             complement(949..1863)
                     /locus_tag="OQQ72_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2013188.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHELKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            2104..2904
                     /locus_tag="OQQ72_003596"
     CDS             2104..2904
                     /locus_tag="OQQ72_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS2013189.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            2935..3531
                     /locus_tag="OQQ72_003597"
                     /pseudo
     CDS             2935..3531
                     /locus_tag="OQQ72_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308233.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ72_003598"
     CDS             complement(3580..4938)
                     /gene="mltD"
                     /locus_tag="OQQ72_003598"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HCS2013190.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ72_003599"
     CDS             complement(5010..5765)
                     /gene="gloB"
                     /locus_tag="OQQ72_003599"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HCS2013191.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALPDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            5799..6521
                     /locus_tag="OQQ72_003600"
     CDS             5799..6521
                     /locus_tag="OQQ72_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS2013192.1"
                     /translation="MKPARVPQTVVAPDRWGDLPWGELYRKALERQLNPWFTKMYGFH
                     LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLRETDRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQL
                     DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ
                     SKNKPRIRQAVGATRQCRKPQA"
     gene            complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ72_003601"
     CDS             complement(6518..6985)
                     /gene="rnhA"
                     /locus_tag="OQQ72_003601"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HCS2013193.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ72_003602"
     CDS             7050..7781
                     /gene="dnaQ"
                     /locus_tag="OQQ72_003602"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HCS2013194.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
     gene            7914..7990
                     /locus_tag="OQQ72_003603"
     tRNA            7914..7990
                     /locus_tag="OQQ72_003603"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7948..7950,aa:Asp,seq:gtc)
BASE COUNT         2030 a         1968 c         1952 g         2174 t
ORIGIN      
        1 tattaagaag cctcgagtta acgctcgagg tttttttcgt ctgtatatct attattgcca
       61 gaatcgcaaa aatcctctgc attttacgct tttttcctca acagtctgaa gcccataatc
      121 acctcagtta acgaaaatag cattaaaaga ggcatattat ggctatccct gcatttggtt
      181 taggttgaaa gactacgttg ttatttcatc tgtgaaaacg gcgcttgaac ttggttatcg
      241 cgcaattgat accgcacaaa tctatgataa cgaagccgca gtaggtcagg cgattgcaga
      301 aagtggcgtg ccacgtcatg aactctacat caccactaaa atctggattg aaaatctcag
      361 caaagacaaa ttgatcccaa gtctgaaaga gagcctgcaa aaattgcgta ccgattatgt
      421 tgatctgacg ctaatccact ggccgtcacc aaacgatgaa gtctctgttg aaggggttat
      481 gcaggcgctg ctggaagcca aaaaacaagg gctgacgcgt gagatcggta tttccaactt
      541 cacgatccca ttgatggaaa aggcgattgc tgctgttggc gctgaaaaca tcgctactaa
      601 ccagattgaa ctctctcctt atctgcaaaa ccgtaaagtg gttgcctggg ctaaacagca
      661 cggcatccat attacttcct atatgacgct ggcgtatggt aaggccctga aagatgaggt
      721 tattgctcgt atcgcagcta aacacaatgc gactccggca caagtgattc tggcgtgggc
      781 tatgggggaa ggttactcag taattccttc ttctactaaa cgtaaaaacc tggaaagtaa
      841 tcttaaggca caaaatttac agcttgatgc cgaagataaa aaagcgatcg ccgcactgga
      901 ttgcaacgac cgcctggtta gcccggaagg tctggctcct gaatgggatt aagcctctct
      961 gacagctcct ccgggagctg tttttacatg ctcgctaagg aaatcgataa aagcccggat
     1021 gcgcgtactt accgcacggt cgctgtaata gacggcactg aatggcattt ccactggcaa
     1081 cactttatct gccattaact ccaccaattc tccgcgagcg atttctctgt cgatcatgta
     1141 gtcggacaaa cacgcaatcc cgttgccact caggcaaagc tgtttcagtg tttccccact
     1201 attggatgac aaaccgtatt tcagctcatg taattgtcca tcactacagg ctatcggcca
     1261 ggtattgagg gaagcgggtt cagtgaatcc caggcaaaca tgttgcttta aatcgtcgat
     1321 cgtttctggc ttcccgtagc gggaaatata atcgggggag gcgataattt ttcgataact
     1381 gttaaataac ggcctggcac gtaagctgga atccgttaac gtaccagcgc gtatcgcgac
     1441 atccactttt ctttcgatca aattaataat cgtttcggag gagactagcg acaaagtgac
     1501 ttccggatag cgttcacgga aaggcttaat taacggcatc agaaagtgca gcaccactgg
     1561 agttgcggca tcgatccgta acagtccacg cggtgtatta cgcgtctcca taatttctga
     1621 ttctgccgct gccatctcct gcaaaattga ctgtacgcga cgaaaataac gctcgccttc
     1681 ttccgtcagg ctaagttgtc gcgtggtccg attaagcagg ctaacgccaa gtttcatctc
     1741 cagctttttc accgcccggc ttaccgctga gtttgcttgc cctaattgtt ccgctgcccg
     1801 gctaaagctg ccgctttcga cgaccgaaac aaaaatggcg agttcttccg acgtggcttt
     1861 catttttgct cctgttgcaa aatagaagag atattttgaa tttatttgtc attaaaccat
     1921 caggatgcgt gatatgtcat gcgatttaat gttctccata atgagcaaaa ttctgaccgg
     1981 tgtaagcact tgcttacata acaatataca attgctcgtt gaaagagtga gctaaaatcc
     2041 ctataatagt agaaccctcc cgagtgcgga agggttgacg taatagaggt ttcaaagtca
     2101 aaagtgcgaa aaaacaccta tgccatgcgc tatgttgccg gacaacctgc ggaaaggatc
     2161 ttaccgccgg ggtcttttgc gagcatcggc caggcattac cacctgggga accgttaagt
     2221 accgaagagc gtattcggat cctggtgtgg aacatataca aacagcaacg cgctgaatgg
     2281 ttgtcggtat taaagaacta cggcaaagat gcacacctgg tgttattgca ggaagcgcag
     2341 acaacgccag agttagtaca gtttgcgacc gctaactatc ttgccgccga tcaggtaccc
     2401 gctttcgtgc tgccacaaca tccttctggc gtaatgaccc tttcggcggc acatccagtg
     2461 tattgctgcc cgttacgtga acgagaaccc attttgcgtc tggcgaagtc ggcactggtg
     2521 acggtctatc cattacctga cacccgcctg ttgatggtgg ttaatataca cgccgtcaac
     2581 ttcagtctgg gcgtggatgt ctatagtaag cagttacttc ctattggtga tcagatagct
     2641 caccacagcg gcccggtcat tatggcggga gatttcaatg cctggagccg tagaaggatg
     2701 aacgcgttat atcgctttgc gcgggaaatg tcgctgcgcc aggtgcgttt taccgatgat
     2761 cagcgccgtc gggcgtttgg tcgcccgctc gattttgttt tctaccgtgg tctgaacgtc
     2821 agtgaagctt ctgtactggt tacgcgcgct tccgatcaca atccgctact cgttgaattc
     2881 agtcccggca agcctgataa ataaggtatg tcaggtctgc cacagggcag accaacgttt
     2941 ggcgctgcgc aaaacgtgag cgcggtggtg gcgtatgact tatcggccca catgctggat
     3001 gtcgtggcac aagctgccga agcccggcaa ctgaaaaata tcaccacccg ccagggatat
     3061 gccgcaagtc tgccatttgc cgataacgca tttgatattg ttatcagccg ttattctgcc
     3121 catcactggc atgatgttgg tgcagcactg cgagaagtga ataggatatt gaaacctggc
     3181 ggtaggctga ttgtgatgga tgtaatgtct ccgggtcacc cagtgcgcga catctggtta
     3241 caggcggtag aagcattacg cgatacctct cacgtacgaa actacgccag cggtgcgtgg
     3301 ttgacgttaa tcaatgaagc caatcttata gttgataatt taattacaga taagttaccg
     3361 ctggaatttt cttcatgggt cgtgagaatg cgtacgccag aagcgttagt agacgctatt
     3421 cgcatttacc aacagagcgc atcgacagag gtgagaacgt atttttcctt gcagactgat
     3481 ggctctttca ccagtgatat catcatggta gaagcgcata aagcggcata aataaaaaag
     3541 gcaccggggg aatcggtgcc ttttttatta tctggtttgt caggaatctg gcatgttgtt
     3601 gtttttcaca aacaacgtca gcttatcgcc tggttgcaga ttcgcagtgt cactgttcca
     3661 gcgcatcaca tctttgatgt tcacgccgtg gcgtttagca atgcttgaaa gcgaatcgcc
     3721 tttgcgcaca cgatacgtaa tgctatcgct gttgtttgcc aaccgctgtg cgctactgcc
     3781 tgcaccaatc gtcaaacttt ggcctggctt cagcttagat ccgcgcagtt tgttccactg
     3841 ctgcaaatct ttggtgctta cgccgagacg tgaagcgatg cttgaaagcg tgtcgccaga
     3901 gcgtacggtg taaacacggc tgttaagcgg cgtattgtcg gcaaccagcg tcgactgtac
     3961 agcagcaatt tcgcctgaag cgagagaatc acgcagttga tctgcatgct tctttggcac
     4021 catcacgtac tgcgggccac ttgcgcccag cgtggagcct tttacgccag cgttgaatgt
     4081 cttcagcttg ctgacggaaa tccccgccat atctgcaacc ttcgccattt caaccgggct
     4141 gctcaggtgc acacgcgcca gagcacggct ttcatcggtc gttggcagac gtacgccata
     4201 acgcttgctg tttttgagaa tatcactcaa tgccagcatt ttaggcacgt actgcttcgt
     4261 ttcctgcggc aacggtaacg accagaagtc cgtggatttc ccacgcgctt tgttcgtttt
     4321 aattgccttc atgacccgac cttcgccgct gttataagcc gctacggtca gaagccagtc
     4381 gccgtcaaac atcttgttca gacgctgcat catgttcagc gcggcagttg ttgaagcaac
     4441 aacatcgcga cgcgcgtcat aattgcgggt ctgtttcaaa ccataattgc gccccgtgct
     4501 cggaatgatc tgccagatgc ctgcggcatt ggcgccagac gttgcgtgag gatcaaaagc
     4561 gctctccact atgggtagta gtaccagttc cataggcatg ttacgttttt taacttgccc
     4621 tgctatccag tacatatacg gctctgcccg taaagttaca tcgtggagat agctcttatt
     4681 gcgtaaatat ttctgtttct gttcgcgaat ccggtcattt tccggaattc ccatctttag
     4741 ctcgtcgcca atgaaagccc acaagtcacc atctggcgcg atagacgtcc catcgtccat
     4801 ccatcgtgcc tgacttgtaa actttgctgc ttccccttga ccagctgcag aaaggctctg
     4861 tgcgtgctgt tgaacgttgc cggtactctg gcaacccacg agcaggacag aggcgagtaa
     4921 tatcgctttt gccttcatgt gtgtgtcaat agttgcttaa aagacgaccg atcataacgg
     4981 cgaacggagc cgatgacaag aaagttttat cagaacctat ctttctttga ccttaaccat
     5041 gcaaaacgct cttcaggttg ttgcaataat gtttcttcat taattacatt aattaaatca
     5101 atatcttccg ttcttaaaaa aacattaatt tgccgctcat ttttcagaat tacgggtagt
     5161 gttatttgat tttttgcccg taactcctta actttacgat aataatcatt tatggacaaa
     5221 tcgtgcggaa gaatactcaa agcaaacttc atatttgata acgtatattc atgagcacaa
     5281 cataccaatg tatcgtcagg taacgcactt aacttattaa gtgattgata catttgtgat
     5341 gctgtccctt caaacaacct accacaccca ccagaaaaca gcgtgtcgcc gcaaaataga
     5401 taaggtttac tgaagtaaca gatatgtcct aaagtgtgac ccggtgtggc aattacacta
     5461 aattcatgcc ccaaaacgaa ggcagtttcg ccatctttga ctacctgtgt tgttccctta
     5521 tcttgtgtct cttgtggacc atacaccaca atttgcggaa acttttccac cagttctttt
     5581 acgccgccaa cgtgatcgtg atgatggtgg gtgagaaata tggcctccgg ttgccagtta
     5641 ttggcggcaa tggcgtttaa tactggctct gcgtctccgg gatcgacaat caggcagcga
     5701 cctgcttcat cattcaaaac ccagatgtaa ttgtcatcaa aggcgggaat actgttaaga
     5761 ttcatagatt acctcttagt gtgaaacgga aggttgtgat gaaaccggca agagtccctc
     5821 aaactgtcgt ggctcctgat cgctggggcg atttgccctg gggagagctt tatcgcaagg
     5881 cgctggagcg ccagctcaac ccgtggttca ctaaaatgta tggttttcat ctgcttaaga
     5941 ttggcaattt aagcgcagaa atcaattgcg aagcgtgcgc ggtttctcat caagtgaatg
     6001 tttctgcgca aggaatgccc gtccaggtgc aggcggatcc acttcatctt ccttttgccg
     6061 ataaatccgt tgatgtttgt ctactggcac atacattgcc gtggtgcacc gatccgcatc
     6121 gtttattgcg tgaaaccgat cgggtattga ttgatgatgg ctggctggtg attagtggct
     6181 tcaatcccat tagtttaatg ggattacgca aacttgtgcc ggtattgcga aaaacctcgc
     6241 cctataacag ccggatgttt actctgatgc ggcaactgga ctggctctct ttgttgaatt
     6301 ttgaagtgct gcacgccagc cgtttccacg ttctcccgtg gaacaaacac ggaggaaaac
     6361 tattgaatgc gcatattcct gcgcttggtt gcttacaact tattgttgcc cggaaacgga
     6421 ctattccttt aacgctaaac ccgatgaaac agagtaaaaa caagccacga attcgccaag
     6481 cggttggagc cacccggcaa tgtcgtaaac cacaagctta aacttcgact tggtagcccg
     6541 tatcttccag tgtgggattc attgccgcag cacgagccag ttcatcacag cgttcgtttt
     6601 ccgggtgtcc ggcatggcct ttaacccatt cccatttgat ttgatgttgc cctagggcag
     6661 catcaagacg ttgccagaga tcgacatttt ttactggttt tttgtctgcg gttttccagc
     6721 cacgtttttt ccagttatgg atccactggg tgataccctg gcggacatac tggctgtcgg
     6781 tactcaaaat gacttcgcaa tgttctttta acgcctccag cgcgacaata gcggccatca
     6841 actccatacg gttgttggtg gtgcgggtgt agcctgcgct aaaggttttc tcgcgtccgc
     6901 gatagcgtaa aatagcgccg taacccccag gtcctggatt gcccagacac gaaccatcgg
     6961 tgaaaatttc tacctgttta agcatctctg gtagacttcc tgtaattgaa tcgaactgta
     7021 aaacgataag tctgacataa atgaccgcta tgagcactgc aattacacgc cagatcgttc
     7081 tcgataccga aaccaccggt atgaaccaga ttggtgcgca ctatgaaggc cacaagatca
     7141 ttgagattgg tgccgttgaa gtggtgaacc gtcgcctgac gggcaataac ttccatgttt
     7201 atctcaaacc cgatcggctg gtggatccgg aagcctttgg cgtacatggt attgccgatg
     7261 aatttttgct cgataagccc acgtttgccg aagtagccga tgagttcatg gactatatcc
     7321 gcggcgcgga gttggtgatc cataacgcag cgttcgatat cggctttatg gactacgagt
     7381 tttcgttgct taagcgcgat attccgaaga ccaatacctt ctgtaaggtc accgatagcc
     7441 ttgcggtggc gaggaaaatg tttcctggta agcgcaacag cctcgatgcg ttatgtgccc
     7501 gctacgaaat agataacagt aaacgaacgc tacacggggc attactcgat gcacagatcc
     7561 ttgcggaagt ttatctggcg atgaccggtg gtcaaacgtc gatggctttt gcgatggaag
     7621 gagagacaca gcagcaacaa ggtgaagcaa caattcagcg cattgtacgt caggcaagta
     7681 agttacgcgt tgtttttgcg acagatgaag agcttgcagc tcatgaagcc cgtcttgatc
     7741 tggtggagaa gaagggcgga agctgcctct ggcgggcata aatacctgta aaaggcgcta
     7801 aaaatagcgg cttgggcgat ttttgcagca aacgattcaa aagatgagaa aaaccgttga
     7861 cgaagggtga ggcaatccgt aatattcgcc tcgttcccaa cggaacacaa cgcggagcgg
     7921 tagttcagtc ggttagaata cctgcctgtc acgcaggggg tcgcgggttc gagtcccgtc
     7981 cgttccgcca aattcactca tgaaaatgag ttcagagaac cgcaagattt ttaattttgc
     8041 ggtttttttg catttaaatc ccgctatttc ttcggtctat ggttttgtta tgctgtaaat
     8101 gtgttaatca catatggtag acca
//
LOCUS       DAJVUY010000175         7828 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.176, whole genome shotgun sequence.
ACCESSION   DAJVUY010000175 DAJVUY010000000
VERSION     DAJVUY010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7828
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.176"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..270)
                     /locus_tag="OQQ72_003604"
     CDS             complement(<1..270)
                     /locus_tag="OQQ72_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS2013195.1"
                     /translation="MEIREGHNKFYINDEQGKQIAEIVFVPTGENLAIIEHTDVDESL
                     KGQGIGKQLVAKVVEKMRREKRKIIPLCPFAKHEFDKTREYDDIRS"
     gene            complement(282..512)
                     /locus_tag="OQQ72_003605"
     CDS             complement(282..512)
                     /locus_tag="OQQ72_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HCS2013196.1"
                     /translation="MDQALLDEGYRCYTGEKIDVYFNTAICQHSGNCVRGNGKLFNLK
                     RKPWIMPDEVDVVTVVKVIDTCPSGALKYRHK"
     gene            693..2324
                     /gene="dcuS"
                     /locus_tag="OQQ72_003606"
     CDS             693..2324
                     /gene="dcuS"
                     /locus_tag="OQQ72_003606"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DcuS"
                     /protein_id="HCS2013197.1"
                     /translation="MRHSLPYRMLLKRPMKLSTTVILMVSAVQFSVLLVVHLIYFSQI
                     SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD
                     MQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFTPIYDENHKQI
                     GVVVSGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS
                     TLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV
                     VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL
                     DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYSLKTANNYKEEIGSLLGKI
                     KSPVIAGFLISKINRATDLGHTLILNSESLLPDSGSEDQVATLITTLGNLIENALEAL
                     GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK
                     QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR"
     gene            2321..3040
                     /gene="dcuR"
                     /locus_tag="OQQ72_003607"
     CDS             2321..3040
                     /gene="dcuR"
                     /locus_tag="OQQ72_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DcuR"
                     /protein_id="HCS2013198.1"
                     /translation="MSNVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF
                     NSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD
                     YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT
                     PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
                     RPVYRYRIQAEHYSLLKQYCQ"
     gene            3611..4951
                     /gene="dcuB"
                     /locus_tag="OQQ72_003608"
     CDS             3611..4951
                     /gene="dcuB"
                     /locus_tag="OQQ72_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuB"
                     /protein_id="HCS2013199.1"
                     /translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP
                     GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI
                     LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG
                     NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY
                     VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF
                     MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG
                     EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL
                     PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
     gene            5029..6675
                     /gene="fumB"
                     /locus_tag="OQQ72_003609"
     CDS             5029..6675
                     /gene="fumB"
                     /locus_tag="OQQ72_003609"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS2013200.1"
                     /translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP
                     EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL
                     PTCQDTGIAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL
                     LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
                     IEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
                     RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
                     LQSHGGSMIMLAKGNRSQQVTDTCHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK"
     gene            6798..7427
                     /locus_tag="OQQ72_003610"
     CDS             6798..7427
                     /locus_tag="OQQ72_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HCS2013201.1"
                     /translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLMEVTPVIIV
                     VPLLLATARRYPLTPLLYTLIFLHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK
                     LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
                     GADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG"
     gene            complement(7566..>7828)
                     /locus_tag="OQQ72_003611"
     CDS             complement(7566..>7828)
                     /locus_tag="OQQ72_003611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HCS2013202.1"
                     /translation="AVVLGMIGYVPNVEQSTQALLGMQFIMIALPTLFFMVTLILYFR
                     FYRLNGDTLRRIQIHLLDKYRKVPPEPVHADIPVGAVSDVKA"
BASE COUNT         1974 a         2012 c         1915 g         1927 t
ORIGIN      
        1 actgcgaata tcatcatact cccgcgtttt atcaaattcg tgtttcgcaa atgggcatag
       61 tgggataatt tttcgttttt cccgacgcat tttttccacg actttcgcaa ccagctgttt
      121 accaatcccc tgccctttca ggctttcatc gacatcggta tgttcgataa tcgctaaatt
      181 ctctccggtc ggcacaaaga caatttcagc gatttgcttg ccctgttcgt cattaatgta
      241 aaatttattg tggccttcgc gtatttccat tttaccctcg cttatttatg acggtatttc
      301 agcgcgccgc tcgggcacgt atcaatcact ttaaccacag tgacgacgtc gacttcatcc
      361 ggcatgatcc acggctttcg tttgagatta aataacttgc cgttgccacg tacgcaattg
      421 ccagaatgct gacatatcgc agtgttgaaa tagacatcga tcttttcgcc ggtataacag
      481 cgataaccct cgtccagtag cgcctgatcc atgactttcc ctctctcatc agtatgatta
      541 tcgctataag catagccctg gaatcttcat acagcactgg cagtttccgt tgccagagtc
      601 tcttccccta tatagccaat cattcttacg ccctttgaat tacccgcctc atcagagata
      661 atgcttaaga aatttgtcac acaaggaagc tgatgagaca ttcattgccc taccgcatgt
      721 tactcaaacg tccgatgaaa ttgagtacca cagtgatctt aatggtcagc gcggtacagt
      781 tctcggtgct attggtggtg catctgattt acttctcgca aatcagtgat atgacacgag
      841 acgggctggc caacaaggca ctggcagtgg cgcgtaccct cgccgactcg ccggaaatcc
      901 gtcagggctt gcagaaaaaa ccgcaggaga gcggaatcca ggccatcgcg gaagccgtgc
      961 gcaaacgcaa cgatctgctg tttattgtcg ttacggatat gcaaagtctt cgctactcgc
     1021 atcctgaagc ccagcgtatt ggtcagccat ttaaaggtga tgacatcctt aaagcgctga
     1081 atggcaaaga aaatgtcgct atcaatcgcg gttttctggc gcaggcttta cgcgtattta
     1141 cccccatcta cgatgaaaat cataaacaaa ttggcgtggt ggtgagcggc cttgagttaa
     1201 gccgcgtgac ccaacaaatc aatgacagtc gctggagcat tatctggtcg gtattatttg
     1261 gcatgctggt cggactgatt ggcacctgca ttctggttaa ggtactgaaa aaaatccttt
     1321 tcggcctgga accctacgaa atctccacgc tgtttgagca gcgccaggcc atgttgcagt
     1381 ctatcaaaga aggcgtcgtt gccgtggacg atcgcggcga ggtcacgctg atcaacgatg
     1441 ccgcacaaga attgctgaat taccgtaagt cgcaggacga tgagaaactg tcgacgctaa
     1501 gccactcatg gtcacaggtg gtagatgtct cggaagtgtt acgcgacggt acgccgcgcc
     1561 gcgacgaaga gattacgatt aaagaccggc tattactgat caacaccgtt ccggtgcgca
     1621 gtaatggcgt tatcatcggt gccatttcaa ccttcaggga caaaactgaa gttcgtaaac
     1681 tgatgcagcg actcgacggt ctggtcaact atgctgatgc acttcgtgaa cgatcccacg
     1741 aatttatgaa taaattgcat gtgattctcg gattattgca tctgaagagt tataagcagt
     1801 tggaagatta cagtctcaaa acagccaata actataagga agagattggc tctctgctgg
     1861 gtaagatcaa atctccggtt atcgctggtt ttttaatcag caagattaac cgcgcgaccg
     1921 atttaggcca tacgctgatt ttaaacagtg aaagcctgct gccagacagc ggcagtgagg
     1981 accaggtcgc gacgctgatt accacattgg gaaatctgat agaaaacgcg ctggaagcat
     2041 tagggccgga acccggtggc gaaattagcg taacattgca ctaccgtcac ggctggctgc
     2101 actgcgaagt taacgatgat ggaccgggga tcgcacccga caaaatcgat cacatttttg
     2161 acaaaggtgt ctcgacaaaa ggaagcgagc gaggcgtcgg tttagcactt gtcaaacaac
     2221 aggtagaaaa tctcggcggc agcatcgccg tggaatcgga acccgggatt ttcacacaat
     2281 tttttgtcca gataccctgg gacggggaga ggtcaaacag atgagcaatg tattaattat
     2341 cgatgacgac gcaatggtcg cggagctgaa tcgccgatac gtagcacaaa tcccaggctt
     2401 tcaatgctgt ggaacagcct cgacgctgga gaaagccaaa gagattatct tcaatagcga
     2461 tacgcctatc gacctgatat tgctcgatat ctatatgcaa aaagagaacg ggctcgattt
     2521 actgcctgtc ctgcataacg cgcgttgcaa aagtgatgtg attgtcatct cctccgcagc
     2581 cgatgcggca accattaaag attcgctgca ttacggtgtc gtggattacc tgatcaaacc
     2641 cttccaggct tcccgctttg aagaggcgct caccggctgg cggcaaaaga aaatggcgct
     2701 ggaaaaacat cagtattatg accaggccga gcttgatcag ctaatccacg gcagcagctc
     2761 caacgaacag gatcctcgtc gcttgccaaa aggcttaacg ccgcagacgt tacgcacgct
     2821 gtgccagtgg attgacgcgc atcaggacta tgagttttca accgacgagc tggctaacga
     2881 ggttaacatc tcgcgtgttt cctgccgtaa atacctcatc tggctggtca actgccacat
     2941 cttgttcacc agtatccatt atggcgtcac ggggcgtccg gtttaccgtt accgtattca
     3001 ggcagaacac tactcactac tgaaacaata ttgccaataa cggatcgctg gttatctgta
     3061 agtaataatt attaccgtaa tgcaaaatac ccctggcaca agttacatcc ttcatcagta
     3121 aaacttgtgc cagatcaaat ataattatcc ctccatcatc gctaaaaatt aatatctctt
     3181 caggtgaacg gtgtttttaa tttcaaaacg ctaacaaaag ttaattaact attatgtcac
     3241 ccgcattatg tgtattttca cccacaaatg ggtagataag attaatcttt aaacctaatg
     3301 atatctgccc tgagaacaaa aaatagaccg ataaatatca ataagataac agcaaacaaa
     3361 acattaacat ctgcgcagta caaactataa acccatcgcc agagagtttt tctctctgaa
     3421 aaagccgctt atcacagtgc ataaatttgc cgctgcttta atcagccaat atttactgtg
     3481 aggtatttgc taaagccggt aacgaccaaa cggatattta gtcaggctct gaaaacagtt
     3541 catacaaaac agaacgtgac tgtgatctat tcagcaaaaa tttaaatagg attatcgcga
     3601 gggttcacac atgttattta ctatccaact tatcataata ctgatatgtc tgttttatgg
     3661 tgccagaaag ggtggtatcg cgctgggttt attaggcggt atcggtctgg tcattctggt
     3721 cttcgtcttc caccttcagc caggtaaacc accggttgat gtcatgctgg ttatcattgc
     3781 ggtggtggcg gcatcggcga ccttgcaagc ttcgggcggt cttgatgtca tgctgcaaat
     3841 tgccgagaag ttgctgcgcc gcaacccgaa atatgtctca attgtcgcgc cgtttgtgac
     3901 ctgtacgctg accattcttt gcggtacggg tcatgtggtt tacaccattc tgccgatcat
     3961 ctacgacgtc gccattaaga acaacatccg tccggaacgt ccgatggcgg caagttctat
     4021 cggtgcacag atggggatta tcgccagtcc ggtgtcggtt gcggtcgtgt ctctggttgc
     4081 gatgctgggt aatgtcacct ttgatggtcg ccatcttgag ttcctcgacc tgctggcaat
     4141 caccattcca tcgacgttaa tcggtatcct ggcgatcggt atcttcagct ggttccgtgg
     4201 taaagatctg gataaagacg aagagttcca gaaattcatc tccgtaccgg aaaaccgtga
     4261 gtatgtttac ggtgataccg cgacgctgct ggataaaaaa ctgccgaaaa gcaactggct
     4321 ggcaatgtgg attttcctcg gggcaatcgc tgtagtcgcc cttcttggtg ctgattcgga
     4381 cctgcgtcca tccttcggcg gcaaaccgct gtcgatggta ctggttattc agatgtttat
     4441 gctgctgacc ggggcgctga ttattatcct gaccaaaacc aatcccgcgt ctatctcaaa
     4501 aaacgaagtc ttccgttccg gtatgatcgc catcgtggcg gtgtacggta tcgcatggat
     4561 ggcagaaacc atgttcggtg cgcatatgtc tgaaattcag ggcgtactgg gtgaaatggt
     4621 gaaagagtat ccgtgggcct atgccattgt tctgctgctg gtttccaagt ttgtaaactc
     4681 tcaggctgcg gcgctggcgg cgattgttcc ggtcgcgttg gcgatcggcg ttgatccggc
     4741 atacatcgtg gcttcagcac cggcttgcta cggttattac atcctgccga cttatccgag
     4801 cgatctggca gcgattcagt ttgaccgttc cggcaccacc cacatcggtc gcttcgtcat
     4861 caaccacagc tttattctgc cggggttgat tggtgtgagc gtatcgtgcg tcttcggctg
     4921 gatcttcgcc gcgatgtacg ggttcttata aatgcacttt gcgtgccgcc cgtgactacg
     4981 cggcacgcca ttttcgaata acaaatacag agttacaggc tggaagctat gtcaaacaaa
     5041 ccctttatct accaggcacc tttcccgatg gggaaagaca ataccgaata ctatctactc
     5101 acttccgatt acgttagcgt tgccgacttc gacggcgaaa ccatcctgaa agtggaacca
     5161 gaagccctga ccctgctggc gcagcaagcc tttcacgacg cttcttttat gctccgcccg
     5221 gcacaccaga aacaggttgc ggctattctt cacgatccag aagccagcga aaacgacaag
     5281 tacgtggcgc tgcaattctt aagaaattcc gaaatcgccg ccaaaggcgt gctgccgacc
     5341 tgccaggata ccggcatcgc gatcatcgtc ggtaaaaaag gccagcgcgt gtggaccggc
     5401 ggcggtgatg aagaagcgct gtcgaaaggc gtctataaca cctatatcga agataacctg
     5461 cgctattcac agaatgcggc gctggacatg tacaaagagg tcaacaccgg cactaacctg
     5521 cctgcgcaaa tcgacctgta cgcggtagat ggcgatgagt acaaattcct ttgcgttgcg
     5581 aaaggcggcg gctctgccaa caaaacgtat ctctaccagg aaaccaaagc cctgctgact
     5641 cccggcaaac tgaaaaactt cctcgtcgag aaaatgcgta ccctcggtac tgcagcctgc
     5701 ccgccgtacc atatcgcgtt tgtgattggc ggtacgtctg cggaaaccaa cctgaaaacc
     5761 gtcaagttag caagcgctca ctattacgat gaactgccga cggaagggaa cgaacatggt
     5821 caggcgttcc gcgatgtcca gctggaacag gaactgctgg aagaggccca gaaactcggt
     5881 cttggcgcgc agtttggcgg taaatacttc gcgcacgaca ttcgcgttat ccgtctgcca
     5941 cgtcacggcg catcctgccc ggtcggcatg ggcgtctcct gctccgctga ccgtaacatt
     6001 aaagcgaaaa tcaaccgcga aggtatctgg atcgaaaaac tggaacacaa cccaggccag
     6061 tacattccac aagaactgcg ccaggccggt gaaggcgaag cggtgaaagt tgaccttaac
     6121 cgcccgatga aagagatcct cgcccagctt tcgcaatacc cggtatccac tcgtttgtcg
     6181 ctcaccggca ccattatcgt gggccgagat attgcacacg ccaagctgaa agagctgatt
     6241 gacgccggta aagaacttcc gcagtacatc aaagatcacc cgatctacta cgcgggtccg
     6301 gcgaaaaccc ctgccggtta tccatcaggt tcacttggcc caaccaccgc aggccgtatg
     6361 gactcctacg tggatctgct gcaatcccac ggcggcagca tgatcatgct ggcgaaaggt
     6421 aaccgcagtc agcaggttac cgacacgtgt cataaacacg gcggcttcta cctcggtagc
     6481 atcggcggtc cggcggcggt actggcgcag cagagcatca agcatctgga atgcgtcgct
     6541 tatccggagc tgggtatgga agctatctgg aaaatcgaag tagaagattt cccggcgttt
     6601 atcttggtcg atgacaaagg taacgacttc ttccagcaaa tcgtcaacaa acagtgcgcg
     6661 aactgcacta agtaacctct tcggcccagc gcctggcagc atgctgccag gtgatccccc
     6721 tgggccacct cttttgcgat tgtaatttca cgcttgctgg tgaatagtca gtattttccc
     6781 tgatttgcga actcaccatg acccgcacac tcaagccgtt aattcttaac accggcgcac
     6841 tggcgctaac attaatcctg atttataccg gcatttcggc ccatgacaaa ctcacctggc
     6901 tgatggaagt gacaccggtg attattgtcg tgccgctact gcttgccacc gccagacgtt
     6961 atccgttaac gccgctgctc tatacgctca ttttccttca cgccatcatc ctgatggtcg
     7021 gcggacaata cacctacgcg aaagtccccg ttggttttga ggtgcaggaa tggctggggt
     7081 tgagccgtaa tccgtatgac aagctggggc actttttcca ggggctggtg cctgcactgg
     7141 tggcacgaga aattctcgtt cgcgggatgt acgtgcgcgg acgtaaaatg gtggcgttcc
     7201 tagtctgctg cgtggcgctg gcgataagcg caatgtatga attaatcgag tggtgggcgg
     7261 cgctggcaat gggtcaggga gcggatgatt ttctcggcac ccagggcgac cagtgggaca
     7321 cgcaatccga tatgttctgc gcgctgcttg gcgcattaac gacggtgata ttcctcgctc
     7381 gctttcattg ccgccagcta cggcgctttg gcttgataac cggataacaa cgtgcgcttt
     7441 gttgatgccg gatgcagcgt gaattcctta tccggtctac aaaatttgca aatccaaagc
     7501 attacattaa gacgtggcct gataaacata tcgcatcagg ccattttcgt tagctattgt
     7561 ccacgtcagg ctttcacatc actcactgca ccgaccggaa tatcagcatg aacaggctcg
     7621 ggcggtactt tgcgatattt atccagcaga tggatctgga tcctgcgcag cgtgtcacca
     7681 ttgaggcgat agaaacggaa gtagagaatc agcgttacca tgaaaaacag agttggtaga
     7741 gcaatcataa taaactgcat acctaatagg gcttgcgtag actgttcaac attcggtaca
     7801 tagccaatca tccctaacac aaccgcaa
//
LOCUS       DAJVUY010000176         7695 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.177, whole genome shotgun sequence.
ACCESSION   DAJVUY010000176 DAJVUY010000000
VERSION     DAJVUY010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7695
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.177"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            145..288
                     /locus_tag="OQQ72_003612"
     CDS             145..288
                     /locus_tag="OQQ72_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HCS2013203.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            301..510
                     /gene="cspE"
                     /locus_tag="OQQ72_003613"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             301..510
                     /gene="cspE"
                     /locus_tag="OQQ72_003613"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS2013204.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            676..1485
                     /gene="rlmA"
                     /locus_tag="OQQ72_003614"
     CDS             676..1485
                     /gene="rlmA"
                     /locus_tag="OQQ72_003614"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HCS2013205.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1482..2048)
                     /gene="mntP"
                     /locus_tag="OQQ72_003615"
     CDS             complement(1482..2048)
                     /gene="mntP"
                     /locus_tag="OQQ72_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HCS2013206.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2476..2934)
                     /locus_tag="OQQ72_003616"
     CDS             complement(2476..2934)
                     /locus_tag="OQQ72_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HCS2013207.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLERIYKLIVLTQ"
     gene            complement(2989..3840)
                     /gene="manZ"
                     /locus_tag="OQQ72_003617"
     CDS             complement(2989..3840)
                     /gene="manZ"
                     /locus_tag="OQQ72_003617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HCS2013208.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3853..4653)
                     /gene="manY"
                     /locus_tag="OQQ72_003618"
     CDS             complement(3853..4653)
                     /gene="manY"
                     /locus_tag="OQQ72_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIC"
                     /protein_id="HCS2013209.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4716..5687)
                     /gene="manX"
                     /locus_tag="OQQ72_003619"
     CDS             complement(4716..5687)
                     /gene="manX"
                     /locus_tag="OQQ72_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HCS2013210.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6150..>7695
                     /gene="yoaE"
                     /locus_tag="OQQ72_003620"
     CDS             6150..>7695
                     /gene="yoaE"
                     /locus_tag="OQQ72_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HCS2013211.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1947 a         1886 c         1917 g         1945 t
ORIGIN      
        1 gtattccgtt gcataagtgt gcaaaaaaag tggaagacgt atcgagattt gtgcgtctga
       61 tcgagacatg tttaaaaatg gcttgccata attaacgttg tatgtgataa cagatttcgg
      121 gttaaacgag gtacagttct gtttatgtgt ggcattttca gtaaagaagt cctgagtaaa
      181 cacgttgatg ttgaataccg cttctctgcc gagccttata ttggtgcctc atgcagtaat
      241 gtgtcagttt tatctatgtt atgcctgcgg gcgaagaaaa caatctaagg aatttttcaa
      301 atggcaaaga ttaaaggtca ggttaagtgg ttcaacgagt ctaaaggttt tggcttcatt
      361 actccggctg atggcagcaa agacgtgttc gtacacttct ccgctatcca gggtaatggc
      421 ttcaaaactc tggctgaagg tcagaacgtt gagttcgaaa ttcaggacgg ccagaaaggt
      481 ccggcagctg ttaacgtaac agctatctga tcgaatccac tgatctgaag tgtgaatacg
      541 cttcaatctc gctataaagc ctcgtcgaat gcgaggcttt ttactatgct ttatcttcgc
      601 tcctggcgtt cggatatttg cccgccgcgt gattcgcgtt acacttgcgg cctttagtat
      661 cctgccggag ttgtcatgtc tttttcctgt ccactttgcc atcagcctct ttcgcgtgaa
      721 aaaaacagct atatctgtcc ccagcgacat cagtttgata tggcgaaaga agggtatgtc
      781 aatctgctgc ccgttcagca taaacggtct cgtgatccgg gcgacagcgc ggaaatgatg
      841 caagcacgcc gcgcattctt agatgccgga cattatcagc cgctgcgtga tgcaattgtc
      901 gcccaactga gggaacggct tgatgataag gccacggcgg tgctggatat tggctgtggt
      961 gaagggtatt acacacacgc atttgccgat gcgttgcccg aaatcaccac gtttggtctg
     1021 gatgtttcga aggtagcgat aaaagcggcg gcgaaacgct atccgcaggt cactttttgt
     1081 gtcgcttcca gccaccgttt gccgttttcc gataccagta tggacgccat aatacgtatt
     1141 tacgcgccgt gtaaagcaga agaattagca cgagtagtga agcccggcgg ctgggtcatt
     1201 actgccacgc cgggaccgcg acatttgatg gagctgaagg ggctgattta caatgaagta
     1261 catcttcatg cacctcatgc agaacaactg gaaggtttta cattacagca gagtgcggag
     1321 ttgtgttatc cgatgcgtct tcgcggtgat gaagccgtcg cattattgca gatgacgccg
     1381 tttgcctggc gtgcgaagcc agaagtctgg caaacactgg cagcaaaaga agtgttcgac
     1441 tgccagacgg actttaatat tcacctctgg cagcgttctt attaaccgtg gaagtgcgtc
     1501 cagaggatct ggacgccgat gccgatcagt accagcccgc cgagaatttc cgcttttttc
     1561 ccaataattg agccgataaa gcgaccaacc atcatcccta atgttgacat aatcaaggtt
     1621 gcacaaccaa tggccaatgc ggtcgcgata atgttgacct gcaggaaagc aagaccaaca
     1681 cccacagcca tggcatccag gctggtggca atcgcggtgg ttaccagtag ccagaaaccg
     1741 tgtcgacggc gcggctcttc atcttcatca tctgcgccac gaaaaccctc aataatcatt
     1801 cgcccgccga ggaatatcag cagcacaaac gcaatccagt ggttccattc aaggacaaac
     1861 cggctggcta acatgcccat tccccagccg atcagcggcg tcagggtttc gacggcacca
     1921 aaaataaggc cggttcgcaa tgcttcagaa aatttcggtt tatggagggt ggcaccttta
     1981 ccgattgatg cagcaaatgc atccatcgac ataccaaacg caagaagaac agtagcagtg
     2041 atattcatga caatgtcctg accggggtat ccataaaaca catcatcgcc cccagcaaac
     2101 atgcatacat gaacaacaag ccgtgatggt ttttgcgttc atgcaggcat agcgattgat
     2161 gtgcatatgg tctcgcctga ctgaaagtat tcagtccgta cgtgccacgt tttgcaacga
     2221 gtatgttgac acgtacattt ccggaatctg gaaatcggct actccccaaa tgagggcgca
     2281 accttaacat attttgagaa tataaaacaa ctgttggaat atattatttc attgctttat
     2341 tgataacgaa ttcatttaga tttatatatc aatgaaacgt taaaataaat aacaaataag
     2401 ggaagaggta atatagccta agctatgtct gattattaaa aatacactaa acatagcttt
     2461 ggctaaattc ataacttatt gagttaaaac gataagctta taaattcttt ccagattgtc
     2521 gatatttcga acgcggatta acagccgacg ctgttctaat tgcatcacca acacgccatc
     2581 ttccgacaag ttcatcgctt tgattcggct atattcaatc cagacattgg cgaagaaaaa
     2641 acctttttgt ttaaagatga tcttcggaac gcggatccag aatatataaa aacccatcag
     2701 agccagtgcg cttaataacc atgtcgttat taatgcacca tgattcgtga cgttgttata
     2761 gataagaatg acaatcaatc cgacgaagat aacgctatcg atgcgaccac gccggagcaa
     2821 aggaattgcc agcagggtgg ggccgttacg gcggggcatg atgaactgat cgtagatcgc
     2881 gaaggccagg agtgcggcga tgaaaagaat cagtaccagg tccgtgattg tcattaatcc
     2941 tccagataaa aaaacggggc caaaaggccc cggtagtgta caacagtctt acagtcccag
     3001 caggccgcaa gcgtaaccag cgataccgat gacgaagaag ccaacgatga tccacagcgg
     3061 gttaactttt ttgcgcagta gccacataca agcaaaggtc agcagcagtg gtaccaggcc
     3121 tggcattaac tggtccagaa tagtctggac agtagtaacg tgttctttgc ccgtctggtc
     3181 agtaatgcga gagacaacca gcgggatgtt gacatgtgtc cacttgttaa ccaatgcccc
     3241 catgacaaac aggccgagga tagacgcccc ttccgtcagt ttttgcagga agccaccacc
     3301 catatcttta acgatatcga tacctttgga gtaaccatac gctacgccgt agtaacgggt
     3361 tgccagacgc accaggttaa acaggatgaa gaacagcagc ggacctaaca ggctgccgct
     3421 catcgcgata ccggcaccca gtgctgcaaa taccggacgt acggttcccc agaagatcgg
     3481 gtcgcctaca ccagccagcg gccccatcaa accgactttg ataccgttga tagcaccgtc
     3541 gtcgatctct gcgccattag cacgctgttc ttccagcgcc agggttacgc cgagaatcgg
     3601 cgcagccacg aacggctggg tgttaaagaa ctccaggtga cggcgaatag cttgtttacg
     3661 agcttcgttg ttctcagggt agaggcgacg aattgccggt accatagaga agcagaaacc
     3721 cagtgcctgc atacgttcga agttccatga accctggaag aggttagaac gcaggaagac
     3781 gccacgaata tcactttgag tgagtttttt ctcggtggta gtttgagttg tatcaaccat
     3841 ttcgctcacc tgttagtcca gttcgttatc gagatcgttg ttaccagcag cctgagcagg
     3901 cgcaccggct acgcggttgt atttcgggct aagttggatg tagagcactg ccataacagt
     3961 accgatcaca cccagagcaa ccaggttaaa gttggtgaat gctgcggtta cgaagccgag
     4021 gtagaagaac ggcatcaggt agccagcacg catcatgttg ataaccatcg cataaccaac
     4081 caccacgatc atgccaccgg cgatattcag accattggtc accacttccg gaatcgcatt
     4141 cagcatgttc tgtacttcgc tggtaccaac agacagcgca acgatgacgg ccggaatagc
     4201 cacacgcatt gcttgcagga acagagaaga aacgtggatc caggaaatcg ctgtcaggtt
     4261 gccgttatca gcagccttat ccgcagcgtg ctggaaagca acggtaatag tacgaacgat
     4321 gatggtcagt acctggcccg cagcggccag agggattgcc agtgcgatac ctgcaccaat
     4381 gctctgatga cctgcgataa ccagaatggt agaaatgata gaagccagag cggcgtcagg
     4441 cgcaactgca gcaccgatgt tcatccagcc cagcgcgatc atttccagcg taccaccgat
     4501 aataataccg gttttcatat ccccaagaac gatacccacc agggtacacg cgattagcgg
     4561 acggtgaaac tgaaattcat cgaggattga tcccatacct gcgatacagg ctacgataaa
     4621 taccagcaca atttgaagag tggtaatctc cattgtactt ctcctgttta cgtaagactt
     4681 aagtgtgaaa actgagtgat aatcaacaca atacgttact tatcgatttt gctgatcaga
     4741 tccatcattt tcagtttcgg atcggtggaa accttacgga cttccagctc aataccgcgc
     4801 gcattcagtt tcttgaacgc ctcgatatct ttttcatcaa ccgaaaccgc gttattcacc
     4861 tgggttttac cctgacggaa tgccatacca ccgacgttaa cagaggtgat tttcacgccg
     4921 ccttcaacga gacgctctac atctgttggg ttggtaaata acagcattac gcgttcgcca
     4981 gcatatttcg ggttgttgta gacgcgaatc attttggcaa catcaactac gtgtgctgtt
     5041 acgcccggag gtgcaacctg ggtgagcagt gtcttacgaa cggtatccgc agccacttca
     5101 tcactaacaa caataatacg ggagacattg gtttctttgg tccagcgggt ggcgacctga
     5161 ccgtgaatca gacggtcgtc gatacgcgca aggccaataa ccatgtagtc gtttggcccc
     5221 attggttttg ccggagttgg agccgctttt ggtgctgcgg cagcgggtgc tggcgcggct
     5281 ttttcaaccg gtttggcttt cagtgctttc acgccttcac ggcctgtttc tactgccagc
     5341 gcaaccagtt catcaaagct tgggtcatca tcacgagcca ttaacgtttc cacgagcatt
     5401 ggaatgttaa cgcctgcaat gacttcataa tgctctttgt cgacgacaat gcggctggca
     5461 gcattgaacg ggctgcctcc ccatgtatca acgagaaaca gcacgccttt agtggtgtcg
     5521 agttttgcca actgagcgtt gtacttttca atcagcgttt cggcattttc acctggaacg
     5581 aaatcgatcc agccgacgtt ttcctgctcg cctaacagca tttctgccgt tttaagcaac
     5641 tgctctgcag cccaaccatg tgtgcctata acaatagcaa tggtcacttg ctacctcctt
     5701 tattatcgtt aacacctcaa cgtgccagat gtatttttga atcgtcgtcc acaatcgaat
     5761 cgattcagat aagggctaca accaaaaacc cctgcgtttc gcgatttatt ttagatatcg
     5821 aaaaaattat tttatgtgat gaagatccgt aatttaactt tcgattagca gaaatttcga
     5881 aaggtaaaat atccttgtca cattcgtttg caaaggaagg taaatctttg ccaaatcaga
     5941 ggcgtctctg atatgtttaa ctcccgttta acaaccatgg agtatagggc agtagcccgc
     6001 agtatggatc gtcaccgacg tcatttcagc atcaggcctt ttaacgcctg cctttctggc
     6061 actctatgcc gcacctttcg tttgcatttt gtcgttacgc ctgcattatt tctggcgtcg
     6121 aatagctatt ccttaagcag gagcttgtca tggaattctt aatggacccc tcaatttggg
     6181 cggggctact cacgcttgtt gttctcgaaa ttgtgctggg tatcgataac ctggtcttca
     6241 tcgccattct tgctgacaaa ctgccgccaa aacaacgcga taaagcgcgt ttgctggggt
     6301 tatcactggc gctgattatg cgtctggggc tgctgtcgct gatttcatgg atggtcacgc
     6361 tgaccaaacc gctatttacc gtcatggatt tctccttctc cggacgcgac ctgattatgt
     6421 tgttcggggg gatattcttg ctgttcaaag caacaaccga actgcatgaa cggctggaaa
     6481 accgcgatca tgattccggc cacggtaaag gctacgccag tttctgggtg gtcgtcacac
     6541 agattgtcat ccttgacgcc gtcttctcgt tggatgcggt aattactgca gtagggatgg
     6601 ttaaccatct gccggtgatg atggcggcgg tagtgattgc gatggcggtt atgttgctgg
     6661 catccaaacc gctgacgcga ttcgttaacc agcaccccac ggtggtggtg ctctgtctga
     6721 gcttcctgtt aatgattggt cttagtctgg tggcagaagg tttcggtttc cacattccga
     6781 aaggttacct gtatgccgcg attggcttct cgatcatcat cgaagtgttt aaccagattg
     6841 cgcgtcgcaa ctttattcgc caccagtcga ctttgccgct gcgagcgcgt actgccgatg
     6901 ccatcctgcg tttgatgggc gggaaacgtc aggccaatgt tcagcacgat gccgataacc
     6961 cgatgccgat cccggaaggt gcatttgccg aagaagaacg ttacatgatt aacggcgtac
     7021 tgacgctggc gtcgcgttct ctgcgcggga tcatgacgcc gcgcggtgaa ataagctggg
     7081 ttgacgctaa tctcggggtc gatgaaatcc gcgagcaact gctctcttca ccgcacagtc
     7141 tgttcccggt atgtcgcggt gaactggatg aaatcatcgg tattgtacgt gctaaagaac
     7201 tgctggtggc gctggaagag ggcgttgatg tggcggcgat tgcttcggcg tctccggcga
     7261 ttatcgtccc ggaaaccctc gatccgatca acctgttggg cgtgctgcgt cgtgctcgcg
     7321 ggagctttgt tatcgtgacc aacgagtttg gtgtggtaca aggtctggtc acgccgctgg
     7381 atgtgctgga agccattgcg ggtgaattcc cggacgctga cgaaacgccg gaaatcatta
     7441 ctgatggtga cggctggctg gtaaaaggcg gtacagattt gcatgccttg cagcaggcgc
     7501 ttgatgttga gcaccttgcc gatgacgatg atatcgcgac ggtcgcgggc ctcgtgatct
     7561 cggcaaatgg tcacattccc cgtgtgggcg atgtgattga tgtagggcca ctgcatatca
     7621 ccatcattga agccaatgat tatcgtgttg atctggttcg cattgttaaa gagcaaccgg
     7681 cgcacgatga agatg
//
LOCUS       DAJVUY010000177         7661 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.178, whole genome shotgun sequence.
ACCESSION   DAJVUY010000177 DAJVUY010000000
VERSION     DAJVUY010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7661
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.178"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            380..988
                     /locus_tag="OQQ72_003621"
     CDS             380..988
                     /locus_tag="OQQ72_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS2013212.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            1086..2477
                     /gene="selA"
                     /locus_tag="OQQ72_003622"
     CDS             1086..2477
                     /gene="selA"
                     /locus_tag="OQQ72_003622"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HCS2013213.1"
                     /translation="MTTETRSLYSQLPAIDRLLHDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            2474..4318
                     /gene="selB"
                     /locus_tag="OQQ72_003623"
     CDS             2474..4318
                     /gene="selB"
                     /locus_tag="OQQ72_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HCS2013214.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPSFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFSDEPWW
                     VRDLAKETGTDEQAMRLTLSQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK"
     gene            4508..5659
                     /gene="yiaY"
                     /locus_tag="OQQ72_003624"
     CDS             4508..5659
                     /gene="yiaY"
                     /locus_tag="OQQ72_003624"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HCS2013215.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM"
     gene            5824..7362
                     /gene="aldB"
                     /locus_tag="OQQ72_003625"
     CDS             5824..7362
                     /gene="aldB"
                     /locus_tag="OQQ72_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase AldB"
                     /protein_id="HCS2013216.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1813 a         1917 c         2139 g         1792 t
ORIGIN      
        1 ggattgaccg gatggccgga cgtcactccg ccggggcaca ccgaacaggc cacgccggtg
       61 ggggtaccaa tgcgcacccc ggctgaaccc tgaacaatgc taccgccata ctgcgtcatg
      121 tcgccctgac gcgctgccgg ttttccgctc atttctcatc cttgttttat cgggttattt
      181 gtctgctgac aggcaaaacc ctacagattt ataagaaagc ctgaagtgag atatccatca
      241 gagtgaaata attaggaaaa tatttatatc accatgataa atatgtgatt tatttggaag
      301 taacaaacca tcaacatttt ctgccctttt tcccatcacc aggccatact gatatttttc
      361 ctcgcacaaa ggactcggca tgaaactcgt cggtagctac accagcccgt ttgtacgcaa
      421 actttctatt ctgttgttag aaaagggcat aactttcgaa tttattaatg aactgcccta
      481 taacgcggac aacggcgtgg cgcaatttaa cccgttagga aaagtgccgg tgctggtgac
      541 cgaagagggc gaatgctggt ttgattcgcc gatcatcgct gaatatattg agttaatgaa
      601 tgtcgctccg gcgatgttgc cgcgcgatcc gctggagtcg ttgcgggtgc gcaaaattga
      661 ggcgctggcg gatggcatta tggatgccgg gctggtatcg gtgcgtgaac aggcgcgtcc
      721 ggcggcgcag cagtctgaag atgaattgtt acgccagcgg gagaaaatca accgcagtct
      781 ggatgtgctg gaaggatatc tggtcgatgg cacactcaaa accgatacgg tcaatctggc
      841 gactatcgcc attgcctgtg ctgtcggata tctcaatttc cgccgcgttg cgccaggttg
      901 gtgtgtcgac cgcccacact tagtcaaact ggtcgaaaac ctgtttagcc gcgaaagttt
      961 tgctcgcacc gaaccgccaa aggcttgatg cgcgatatgt cctcctgacc catctcacgt
     1021 tacaatccgt ggttatgtta aacgcccttc tccatgtgag agggccttga ttagctaggt
     1081 ttcctatgac aaccgaaacg cgttccctct atagtcaact tccggctatt gatcgcttat
     1141 tgcacgatag ctccttcctt tctttgcgtg atacttatgg tcacacccgc gtggtggaat
     1201 tgttgcgtca gatgctcgac gaagcgcgag aagtgattcg tgacagccag acgcttcctg
     1261 cgtggtgtga aaactgggcg caagaagtcg atgcccggtt gacgaaagag gcgcagagcg
     1321 cgctgcgtcc ggtgatcaac ctgacgggaa ccgtgctgca taccaacctt ggacgagctt
     1381 tacaggcgga agccgcggtg gaagccgttg cgcaggctat gcgttcgcca gtgaccctcg
     1441 agtacgatct ggacgacgct ggacgcggac atcgcgatcg ggcgctggcg caactgctgt
     1501 gccgtattac gggggcggaa gatgcctgta tcgtcaataa caatgcggcg gcggtgttat
     1561 tgatgttggc ggccactgcc agcgggaaag aggtggtagt atctcgcggc gaattggtgg
     1621 agattggcgg cgcgtttcgt attcccgatg ttatgcgtca ggcaggctgc accctacacg
     1681 aagtagggac caccaaccgc acgcacgcga atgattatcg tcaggcggtg aatgaaaata
     1741 ccgcactgtt gatgaaagta cataccagta actacagcat tcaggggttc accaaagcga
     1801 tagatgaagc ggaactggtg gcgctcggca aagagctgga tgttcccgta gtgactgatt
     1861 taggcagtgg ctcgctggtc gatcttagcc agtacggttt gccgaaagag ccaatgccgc
     1921 aggagttgat tgcggcgggc gtcagtctgg tgagcttctc cggcgacaag ttgttaggcg
     1981 ggccgcaggc agggattatc gttggtaaaa aagagatgat cgcccgcctg caaagccacc
     2041 cgctgaagcg tgcattacgc gcggataaaa tgaccctcgc ggcgctggaa gccacgttgc
     2101 gtctttattt acaccctgaa gctctgagtg aaaaattacc gaccctgcgc ctgcttaccc
     2161 gcagcgcaga ggtcattcaa atccaggcac aacgtttaca ggctcccctt gccgcacatt
     2221 acggcgcgga gtttgcggta caggttatgc catgtctttc gcagattggc agtggttcgc
     2281 tgccggttga tcgcctgccg agcgcggcat taacgtttac accccatgat ggacgcggta
     2341 gccaccttga gtcattagcc gcccgctggc gtgaattgcc agtgccggtg attggtcgta
     2401 tttatgacgg acgattgtgg ctggatttac gctgccttga agatgagcaa cggtttttgg
     2461 agatgttgtt gaaatgatta ttgcgactgc cggacacgtt gaccacggca aaacaacctt
     2521 attgcaggcg attactggcg taaatgctga ccgtctgccg gaagaaaaaa agcgcggcat
     2581 gaccatcgat ctcggctatg cctactggcc gcagccggat ggtcgcgtgc ctagttttat
     2641 cgacgtaccc ggtcatgaaa agtttctttc caacatgctg gcgggcgttg gtggtatcga
     2701 tcacgcgctg ttggtggtgg cgtgcgatga cggcgtgatg gcgcagaccc gtgagcatct
     2761 ggcgattttg cagctgaccg gtaacccgat gctgacagtg gcgctgacca aggccgatcg
     2821 cgtggacgaa gcgcgtgttg atgaggttga acgccaggta aaggaggtgc tgcgggaata
     2881 cggttttgct gaggcaaaac tgtttatcac cgcagcaacc gaaggtcggg gaattgatgc
     2941 cctgcgcgag catctgcttc agttaccagg acgtgaacac gccagccaac atagtttccg
     3001 cctcgcgatc gaccgcgcat ttaccgtaaa aggtgccggg ctggtcgtca ccggtacggc
     3061 gttaagcggg gaagtgaagg taggcgattc actctggctg actggtgtaa ataaaccgat
     3121 gcgtgtacgt gcgctgcatg cacaaaacca gccaacagaa accgcccatg ccgggcagcg
     3181 tatcgcgctt aacatcgcgg gtgatgcgga aaaagagcag attaaccgtg gcgactggct
     3241 gcttgccgat gcgccgccag agccgttcac acgggtgatt gtcgagcttc aaacccatac
     3301 accgctgacc cagtggcagc cgctgcatat tcaccacgcc gccagccacg tcacgggacg
     3361 cgtttcactg ctggaagata accttgctga actggtcttc gacaccccgt tatggctggc
     3421 agataacgac cgcctggtat tgcgcgatat ctctgcccgc aacacgctgg ccggagcgcg
     3481 cgtcgtgatg cttaacccgc cgcgtcgcgg taaacgtaaa ccagagtatc tgcaatggct
     3541 ggcttccctc gccagggcac agaatgatag cgaagcgtta gccgttcacc tgcaacgcgg
     3601 cgcggttaat cttcctgatt tcgcctgggc gcgccagctc aacggcgaag ggatgcgcga
     3661 actgctgcaa cagcctggct atattcaggc tggttatagc ttgttgaatg cgccggttgc
     3721 cgctcgctgg caacggaaaa ttctcgacac attagcgact tatcatgagc aacatcgcga
     3781 tgaacctggg cctgggcgcg aacgtctgcg acgtatggcg ttgccaatgg aagatgaagc
     3841 gctagtactg ttgctgattg aaaagatgcg cgaaagcggc gacatcctca gtcatcacgg
     3901 ttggctgcat ctgccggatc acaaagcggg cttcagcgaa gagcagcagg ccatctggca
     3961 aaaagcagag ccgctgttta gtgacgagcc gtggtgggtg cgtgatctgg caaaagagac
     4021 gggtaccgac gagcaggcaa tgcgcttgac gctaagccag gcggcgcagc aaggaataat
     4081 taccgcgatc gtcaaagatc gttattaccg taacgatcgg attgtcgaat ttgccaatat
     4141 gatccgcgat ctcgatcagg agtgtggttc aacctgcgcg gcggatttcc gcgatcgctt
     4201 aggcgtaggc cgaaagctgg caattcagat tctggaatat tttgaccgca ttggctttac
     4261 gcgtcgtcgt ggaaatgatc atttattgcg cgacgcatta ttatttccgg aaaaataagg
     4321 aaatgattaa ttaattttta aaataaatta atacaaattt cttatgattt taaaaaaagc
     4381 acattgttta atgaatacaa tgtgcttttt attagattaa ttttgataat taataataat
     4441 gatcatgttt tcgaatgaaa atcctcagta agcttcccac ccttttttac actttcagga
     4501 gtgtgttatg gcatcttcaa ctttctttat tccttctgtg aatgtcatcg gcgctgattc
     4561 attgactgat gcaatgaata tgatggcaga ttatggattt acccgtacct taattgtcac
     4621 tgacagtatg ttaacgaaat taggtatggc gggcgatgtg caaaaagcac tggaagaacg
     4681 caatattttt agcgttattt atgatggcac ccaacctaac cccaccacgg aaaacgtcgc
     4741 cgcaggtttg aaattactta aagagaataa ttgcgatagc gtgatctcct taggcggtgg
     4801 ttctccacac gactgcgcaa aaggtattgc gctggtggca gccaatggcg gcgatattcg
     4861 cgattacgaa ggcgttgacc gctctgcaaa accgcagctg ccgatgatcg ccatcaacac
     4921 cactgcgggt acggcctctg aaatgacccg tttctgcatc atcactgacg aagcgcgtca
     4981 tatcaaaatg gcgattgttg ataaacatgt cactccgctg ctttctgtca atgactcctc
     5041 tctgatgatt ggtatgccga agtcactgac cgccgcaacg ggtatggatg ccttaacgca
     5101 cgctatcgaa gcatatgttt ctattgccgc cacgccgatc actgacgctt gtgcactgaa
     5161 agccgtgacc atgattgccg aaaacctgcc gttagccgtt gaagatggca gtaatgcgaa
     5221 agcgcgtgaa gcaatggctt atgcccagtt ccttgccggt atggcgttca ataatgcttc
     5281 tctgggttat gttcatgcga tggcgtacca gctgggcggt ttctacaacc tgccacacgg
     5341 tgtatgtaac gccgttctgc tgccccatgt tcaggtattc aacagcaaag tcgccgctgc
     5401 acgtctgcgt gactgtgccg ctgcaatggg cgtgaacgtg acaggtaaaa acgacgcgga
     5461 aggtgctgaa gcctgcatta acgccatccg tgaactggcg aagaaagtgg atatcccggc
     5521 aggcctacgc gacctgaacg tgaaagaaga agatttcgcg gttctggcga ctaatgccct
     5581 gaaagatgcc tgtggtttta ctaacccgat ccaggcaact cacgaagaaa ttgtggcgat
     5641 ttatcgcgca gcgatgtaat catcatttcc acaacggctg gcaaattgtc agccgctttt
     5701 tcaactatct ctgtaaccct tgcccgtaaa ttcgtgatag ccgtcgtaaa gctgttaccg
     5761 actggcgaag atttcgccag tcacgtctac ccttgttata cctcacaccg caaggagacg
     5821 atcatgacca ataatccccc ttcagcacag attaagcccg gcgagtatgg tttccccctc
     5881 aagttaaaag cccgctatga caactttatt ggcggcgaat gggtagcccc tgccgatggt
     5941 gagtattacc agaacctgac gccggtgact gggcagctgc tgtgcgaagt ggcgtcttcg
     6001 ggcaaacgag acatcgatct ggcgctagat gctgcgcaca aagtgaaaga taaatgggcg
     6061 cacacctcgg tgcaggatcg cgcggcgatt ctgtttaaga ttgccgatcg aatggaacaa
     6121 aacctcgagc tgttagcgac agctgaaacc tgggataacg gcaaacccat tcgcgaaacc
     6181 agtgctgccg acgtgccgct ggcgattgat cattttcgct atttcgcctc gtgtattcgg
     6241 gcgcaggaag gtgggatcag tgaagttgat agcgaaaccg tggcctatca tttccatgaa
     6301 ccgttaggcg tggtggggca gattatcccg tggaacttcc cgctgctgat ggcgagctgg
     6361 aaaatggctc ccgcgctggc ggcgggcaac tgtgtggtgc tgaaacccgc acgtcttacc
     6421 ccgctttctg tactgctgct aatggaaatt gtcggtgatt tactgccgcc gggcgtggtg
     6481 aacgtggtca atggcgcagg tggggaaatt ggcgaatatc tggcgacctc gaaacgcatc
     6541 gccaaagtgg cgtttaccgg ctcaacggaa gtgggccaac aaattatgca atacgcaacg
     6601 caaaacatta ttccggtgac gctggagttg ggcggtaagt cgccaaatat cttctttgct
     6661 gatgtgatgg atgaagaaga tgcctttttc gataaagcgc tggaaggctt tgcactgttt
     6721 gcctttaacc agggcgaagt ttgcacctgt ccgagtcgtg ctttagtgca ggaatctatc
     6781 tacgaacgct ttatggaacg cgccatccgc cgtgtcgaaa gcattcgtag cggtaacccg
     6841 ctcgacagcg tgacgcaaat gggcgcgcag gtttctcacg ggcaactgga aaccatcctc
     6901 aactacattg atatcggtaa aaaagagggc gctgacgtgc tcacaggcgg gcggcgcaag
     6961 ctgctggaag gtgaactgaa agacggctac tacctcgaac cgacgattct gtttggtcag
     7021 aacaatatgc gggtgttcca ggaggagatt tttggcccgg tgctggcggt gaccaccttc
     7081 aaaacgatgg aagaagcgct ggagctggcg aacgatacgc aatatggcct gggcgcgggc
     7141 gtctggagcc gcaacggtaa tctggcctat aagatggggc gcggcataca ggctgggcgc
     7201 gtgtggacca actgttatca cgcttacccg gcacatgcgg cgtttggtgg ctacaaacaa
     7261 tcaggtatcg gtcgcgaaac ccacaagatg atgctggagc attaccagca aaccaagtgc
     7321 ctgctggtga gctactcgga taaaccgttg gggctgttct gatataagaa gctggtcgca
     7381 ttgggtattc attgcctgat gtgacgctta cgcgtcttat catgcctacg ggaacctgac
     7441 cgtaggccgg ataaggcgta cacgccgcat ccggcataaa caaagcgcac gttgttacaa
     7501 tttacgtttt aaacctacgt gcgcaataat ccagactacg ccaacagaag tgcgtttctg
     7561 gggcgtgttt tgtcaggagt ttaatctcgc gtttcgatgg tgagcgggcg aactaggccg
     7621 taaatcacca ttggtgatcc gaggccaatc agcaataaac g
//
LOCUS       DAJVUY010000178         7643 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.179, whole genome shotgun sequence.
ACCESSION   DAJVUY010000178 DAJVUY010000000
VERSION     DAJVUY010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.179"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            566..3979
                     /locus_tag="OQQ72_003626"
     CDS             566..3979
                     /locus_tag="OQQ72_003626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HCS2013217.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLEDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNQHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRN
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4043..5677
                     /locus_tag="OQQ72_003627"
     CDS             4043..5677
                     /locus_tag="OQQ72_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HCS2013218.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLETVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5686..6756
                     /locus_tag="OQQ72_003628"
     CDS             5686..6756
                     /locus_tag="OQQ72_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HCS2013219.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGEIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLIGF"
     gene            complement(6881..7597)
                     /locus_tag="OQQ72_003629"
     CDS             complement(6881..7597)
                     /locus_tag="OQQ72_003629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013220.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNARIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFLRMMPYMEPGLIKRDMGELLKILKKHIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2222 a         1739 c         1794 g         1888 t
ORIGIN      
        1 agtcctgttc tcccaaatat catggtattg atacgggaga ttatgccgta caggtacgac
       61 acgttatgtc gtgccaaagg ggagtggata gaaaaaatgg cgaagatgcg aaaagttgat
      121 taatgcattg aaaaaaatga attaataatg aacttgggta aaagcgccat caaaatacga
      181 cacgacctgt cgtattttgt gttagccggg aaaagatatc tgctacttac taaaatgatt
      241 tagtgctgaa aatatttata agccaataaa tagacaggta ttacggagta acgcccaggc
      301 tattttaacg agcctgctgt tttattggct caaaaaacat atcccataga tgatcagcca
      361 tacccgcgtt agtgagcaag gtatcccttg agtagccagg gctgaagatg cccattgatg
      421 ggcgaaaacc aaggttctgg ccgttaaagc ggctatgtcg ttaaacacat caccaccata
      481 tgccatccgg ctcacttcgt cggccaaatt agtgtgatat tctttccaga atttctgttg
      541 tatccacaac ataaggcgat gattgatgga gcagtctctc aattttgaaa tgttgcgcag
      601 ccagtggccg gaactggcag aactcgcatg tatggcagag cgctatgttc actccgatcc
      661 ggaaagctgc ctggttaagc tgcgcaacta caccgaattg atggtgcgct ggttgtatcg
      721 tcaggagcgg ttgccggaag gtattaaggc taatctttac gatttaatga acgctgatgt
      781 ctttaccagc atgatgccgg aagccatcat catgaaaatg gatgcgctgc gtatccatgg
      841 caaccgtgcc gcgcacggcg gacgtatcaa agctaaagat acttactggc tgctcaaaga
      901 agcgtatttg ttgggaattt ggctgtatgt tcgctacgcc cacggtaatg ttgatgactg
      961 ccccaaattt acactccctc cattaacaca atcttcaggt cgtgcagatg aaaaacgtct
     1021 ggaagatgca atcaaggctc aggatgaaag ccgtgagcgc gaactggcgc tacaacgcgc
     1081 actacagcaa gaacaggaaa aggccgaaca cctcactcaa cgcctgaatg aagccagagc
     1141 gcgtaaccag catgttgccg atattctctc tattgatgaa gcggaaaccc gccgtcgcct
     1201 gattgactct cgcttacttg cagccgactg gaatgtaggg gaagaactta aaaacacgga
     1261 tcaagtcaca caagaacatc cagtcaaaga gcaacccacc acctctggtg acggttatgc
     1321 agactatgtc ttgtgggatg aggcacacaa accgttggcg gtggtggaag caaaaaaaac
     1381 cagcgtcaat gccgagcaag gacgaattca ggcccggctg tatgcagact ggctggaaaa
     1441 agaatacggt cagcgtccgg tcatcttcta caccaacggc tatgatatct ggctgtggga
     1501 tgaccataaa actcatggtt atcccccgcg tcgggtgttt ggcttctaca gcaaggaaag
     1561 cctgcaatat cttattcagc agcgtgaaac ccgtctgccg ctgaacagag tgccacacgt
     1621 aaaagataac gaaggtaagg ccgttgccgg acgtttgtac cagctcgaaa ccattgcccg
     1681 cgtcagtgaa cggtttacca acaagtaccg acaatcgtta attgttcagg ctacgggtac
     1741 aggcaaaacc cgcgtggcaa ttgcactaag caaactgatg attgatgccc gctgggtaaa
     1801 acgcgtcctg tttctttgcg accgtaaaga actgcgtaaa caggcggcaa atgcctttaa
     1861 tcaattcacc aatgagccgc tgtatgtggt cgggaaatcg aaaaaagcag acaggcagaa
     1921 tgccagaatc tacatcgcta cctatcccgg tatgatgaaa atcatggacc atttcgatgt
     1981 cggttatttc gatttgatca tcgccgatga atcccaccgc tctatctaca acgtctacgg
     2041 cgatctgttt aagtattttg atgccctcca gattggcctg acggccacgc caattgacat
     2101 ggtgagtaaa accactttcg gcctgtttgg ttgtgaagga cgtattccta ccgccaacta
     2161 cagcctggaa gatgccatcg ccgataacaa tctggttccc tatgaggttg tcacacacac
     2221 aacagaattc ctgcgcgaag gtatcaaacg ggagaaatta agcgacgcac aaatccgcga
     2281 gctggaagaa caaggcatag atcccaatac gctggagttt gatggcaagg cgctggatga
     2341 ggcgatctac aacaaagaca ccaaccgcta tatcctgcgt aacctgatgg aaaatggcct
     2401 gaaagatcgg gacggccagt tgcctggtaa aaccatcatt ttcgcccgta accacaaaca
     2461 cgcgctgctg ttgaatgaat tgttcgacga tatgtaccca cagtttgccg ggcgcttctg
     2521 ccaggtcatc gacaactacg atccccgcgc cgagcaactg attgatgatt ttaaagggct
     2581 ggatgaaagc accaacaaag agctgaccat cgctatctcc gttgacatgc tcgataccgg
     2641 tattgatgtc ccggaaattg tgaatctggt ctttgccaaa ccggtcaaat caaaagtgaa
     2701 gttctggcag atgattggcc gtggtacgcg cctctgtccg gggttgtacg gttacgacga
     2761 taacggcaaa ccgctggata aacagaaatt ccgcattttc gatcactggg gcaattttga
     2821 gtatcacgag ctgcataccg aagaggcgga agtcacagcg acaaaatcgc ttgcgcaaaa
     2881 acgcttcgaa gcgtgggtta tgctgggggc cgctgcgcag cgtaaattcg acaaacaggc
     2941 ggtggattta gttgctcacc agcttcgcga gcaaatcaac gcactggatg aaaagtcgat
     3001 tgccgtacag gaaaaatggc agcagaaagc gcagtacagt gatgaaaagg tgctgcgcca
     3061 gctttctccg aaaacacagc aggatctgct atctgttctg gccccgttga tgcagtggct
     3121 ggacgtgcgc gggcaaagcg atgccatacg ctttgatatg gatattctgg cggcgcaaac
     3181 tgcccgttat accaacccgg aagagctgga tgttctctgg ccgatcatcg tcgaaaaagt
     3241 ggagcgcctg ccgccgcatt tggcgcaggt gcagcaacag ggacaacgaa tcaatcagct
     3301 tcgtaattta agctggtgga agcaggccag cctggaagag ctggaggata ttcgcattca
     3361 tttgcgcggt atcatgcacc tgatggaaaa agacgcgacg cctaaatttg gttcgataca
     3421 ggtggatatt accgaagatg cgaacctgat ccagacggag acccgcaaaa ctaatatccg
     3481 ctcgattgat ttcaaactct atcgccagca ggttcagggg gcgctggagc cgctgttcca
     3541 gcaaaacccg gttctgaaga aaatccgcaa cggcgagcca gtcacgcaaa acgagctgga
     3601 tgagctggcg aagctggtgc tgatccagaa ccccaacgtt gatattcgtg cgttgaaaga
     3661 gttttatccg caggcaaccg ccagcctgga taaacttttg cgtaccatca tcgggatgga
     3721 cagcgacgcg gtggaagtgc gttttgccca gttcgccgct gataacagcc tgaccagcca
     3781 acaactgcgc ttcctgtcat tgctgaaaaa ccacattcgc gattacggca ccattgaaat
     3841 gcggcagctc tttgaacagc cttttacgca tatccacaac gaaggcgtta ccggtgtgtt
     3901 ccctgatata gcgcaaatcg cccgcctgca aaagatagtc gaagagctgg gtgttgtgac
     3961 cgacgcagcg acggtataat acacgcatga caagccccgg cagcggggct tttgtattta
     4021 aaacaggata taaacgctaa caatgattac tggcgactta aaaagtaaaa tcgacggact
     4081 atgggaagat ttctgggtgg gtggtatcac caacccgctg accgtaatcg aacagatcac
     4141 ctatctgatg tattcccgga tgctggatac ccaggaacaa cgcgacgaaa agcgtaaaca
     4201 aatcgcgggt attgatttta aaccgcgttt tgcgccagaa cagcaggagt tccgtttcag
     4261 tcactatagc aaccttggct cggatgagat gatggaagtg gtgcgcgatg gcgtattcca
     4321 gcatttccgt cagctcggcc aggccgatgc ttcgaaggtg acgctgctgg gcaactttat
     4381 gaaagatgct cgtctggaga ttgttaagcc gtcattgctg accaaagcgg ttgaggtaat
     4441 caaaaacctg ccattggatc gcggcgacac caaaggcgac ctttacgaat acctgttaag
     4501 caagctgaca actgccggaa tcaacggaca gttccgcaca ccgcgccaca ttatccgcac
     4561 gatggttgaa atgatggagc cgaacccggc ccgcggcgag acgatttgcg atcccgcctg
     4621 tggcaccggt ggttttctgg caaccagcta tgaatatctg ctggagaagt acagctcgct
     4681 ggaatccatt catactgaga ttggcaccaa cgaacgtggc gagctggaag agcaaaaaat
     4741 ctttaccggc gatctgctga caccgtggcg taaccatgtg gataacaaca tgttccacgg
     4801 ttacgacttt gacaccacaa tgctacgtat cgccgccatg aacctgatta tgcacggcgt
     4861 ggatgcgcct gatatccact atcaggacac aatgagccag agtttcagca caaacttccc
     4921 gcaggccagt aaaaacgcct tcaacctgat tctggcgaac ccgccgttta ccggttcact
     4981 ggacgaggaa gatatcgact ccacgctgtc ggcaatggtg aaaaccaaaa aaaccgaact
     5041 actgttcctg gcgcgtattc tgcaaatgct gaaagtgggc gggcgcagtg ccactatcgt
     5101 gccgcagggc gtgctgtttg gctctagcaa ggcgcaccag tcacttcgca aaacgctggt
     5161 ggaagataac caactggaaa cggtgatcaa tctgccttct ggtgtattta aaccttacgc
     5221 tggcgtggcg acggcgatcc tgatctttac caaaggcggt caaacggatg aggtctggtt
     5281 ctacgatcta caaaatgacg gctacagcct ggatgataag cgcaacccga taaaagacaa
     5341 cgatctgccg catctgctgg caagctggaa gcattaccgt actttacgcg ggctaccggt
     5401 tgataacttt atgggtaaga agttagcctc gttgcttaaa cagcagtacc cggaagggat
     5461 taatgctggc gttgatttta aagatcgcac gcaggcggcg tttgttgtac cgaaagcgga
     5521 tattgctgcg cagaaatacg atctatccat caaccgttat aaagaagtcg tgtatcaggc
     5581 ggaggaatat gaagatccga aggtgatatt gaagcggtta aaggatctgg aaaaagagat
     5641 tctggcggat ttggatgagc tggaggggat gctgtgagtt cggcgatggt gaagttaggg
     5701 gatgttatta atgttcacta cggaaaagca ttaaaagctg atcagcgtgt atcgaatgga
     5761 agtgtccatg tgtttggtag ttcaggaatt gtcggcaacc acgataaaac gctttgcagc
     5821 tatcccacga taattattgg ccgcaaaggc agcgttggtg ctattacctg ggctccaagc
     5881 ggaggctgga tcattgatac tgcttattac gttgagatca aagataataa taagttagat
     5941 ctccgatact tgttttatat tctgagcgga attgatctca ctaagaaaac gattaccaca
     6001 agtattcctg gattaaatag agacgatctc tatgatacat ttattaaatt accacctttt
     6061 gaagagcaga aacgaattgt ggatcttctc gataaagctg agggtatacg ccaaaaacgt
     6121 gagcaatcca tcaaactggc tgatgatttt ttgcgtgcta cgtttgctac aatgtatggg
     6181 aatcctatta caaaccccaa aaaatggcct gtccatctta tgggagaaat tattgaattt
     6241 aaaggtggaa atcaaccacc taaaagtgat tttatttttg aacctaaaca gggttatatt
     6301 agattagtac aaattagaga ttttaaatcc gataaatatg cgacgtacat tccgcaagaa
     6361 aaagcaaaac gtattttcga agttgatgat gttatgattg ctcgttatgg gccacctgtg
     6421 tttcaaatac ttagaggttt atccggcagc tacaatgtag ctttaatgaa agcttcaccc
     6481 aaagaaaata ttaggaaggg gtttatattc tatcttctac aacttccgga atatcatgat
     6541 gttgttgtaa aaaactctga aagaacagca ggacaaaccg gtgtaaatct tgaactatta
     6601 aacaaattca atgttcccct cccacctata tactatcaag atgagatatt agatagatta
     6661 gctagaattg aaaaatttaa agaaaaaata gaaatatcat taaatcattt agaaatacaa
     6721 tttttatcac tacagaagag attaataggt ttttaaatcc ttagtatcga aataaacatt
     6781 aatttattat attaaattaa gatattttag gaaattaagg cgtcactctt aggtaacgcc
     6841 tttttttact atctcgcccc ctaagaaggt tatatcttac ttaatacctg tgactatttt
     6901 tgatataatc ataaatacac actaatttgc aaaaattact tgacaacacc tgagtattca
     6961 tagcttcatc tatatgtttt ttcaatattt tgagaagctc tcccatatcg cgcttgatta
     7021 atccaggctc catataaggc atcattctta aaaagaaact gaaatcataa gcaagatata
     7081 actcattgac ccccaccttg acctcaggaa cggtttcaga gcgtcgttta tcccatcctt
     7141 gagactgaaa actaatagga gtgatattta atcgtgataa aacgccacct gagagttctg
     7201 tttcattaat tatactccca tcaggattaa ttaatttagc gtgatttaag aagtgaaaaa
     7261 taggaatgcg cgcattgcct ttgcatatat ttggcaaaac atcattaaca acacatcccc
     7321 aatcataata tccattttca aatacaacct ctcggatgag atctacacgc tccagtccaa
     7381 ccaatccttt agttgccatc gattccgatt tttttaccat cgaaatagca ccatatccca
     7441 caacaaactc agttgtactg accccttctt caattttctc tgaatccctc acatataatt
     7501 ttcctttcgg atcatcagtt aagaccaact cataaagttc atcttttatc attcggaata
     7561 aatgtgctgg aatccttttt ttagtttcac tcagcacctc aaatatttct ttataggatg
     7621 gtgcctgaac atattttacc ggg
//
LOCUS       DAJVUY010000179         7628 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.180, whole genome shotgun sequence.
ACCESSION   DAJVUY010000179 DAJVUY010000000
VERSION     DAJVUY010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7628
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.180"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..314)
                     /locus_tag="OQQ72_003630"
     CDS             complement(<1..314)
                     /locus_tag="OQQ72_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HCS2013221.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK
                     VL"
     gene            complement(308..1546)
                     /gene="preT"
                     /locus_tag="OQQ72_003631"
     CDS             complement(308..1546)
                     /gene="preT"
                     /locus_tag="OQQ72_003631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreT"
                     /protein_id="HCS2013222.1"
                     /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ
                     RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQPG
                     GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVG
                     LSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVTMDVASTLKVLG
                     CQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT
                     MAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTMVYAV
                     KTGKEAAEAIHHYLEGACSC"
     gene            complement(1943..2182)
                     /locus_tag="OQQ72_003632"
     CDS             complement(1943..2182)
                     /locus_tag="OQQ72_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HCS2013223.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(2185..2904)
                     /gene="sanA"
                     /locus_tag="OQQ72_003633"
     CDS             complement(2185..2904)
                     /gene="sanA"
                     /locus_tag="OQQ72_003633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HCS2013224.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(3054..3938)
                     /gene="cdd"
                     /locus_tag="OQQ72_003634"
     CDS             complement(3054..3938)
                     /gene="cdd"
                     /locus_tag="OQQ72_003634"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HCS2013225.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(4068..4763)
                     /locus_tag="OQQ72_003635"
     CDS             complement(4068..4763)
                     /locus_tag="OQQ72_003635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HCS2013226.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(4760..5158)
                     /locus_tag="OQQ72_003636"
     CDS             complement(4760..5158)
                     /locus_tag="OQQ72_003636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS2013227.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            5397..6347
                     /gene="dusC"
                     /locus_tag="OQQ72_003637"
                     /pseudo
     CDS             5397..6347
                     /gene="dusC"
                     /locus_tag="OQQ72_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311053.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(6735..6818)
                     /gene="yohP"
                     /locus_tag="OQQ72_003638"
     CDS             complement(6735..6818)
                     /gene="yohP"
                     /locus_tag="OQQ72_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HCS2013228.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
     gene            7042..>7628
                     /locus_tag="OQQ72_003639"
     CDS             7042..>7628
                     /locus_tag="OQQ72_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HCS2013229.1"
                     /translation="MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTA
                     LPTALKNGWPDSQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQD
                     GPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNR
                     AEVTARLGTVKARAAEREQTRQLLAGSVARLYWEW"
BASE COUNT         1967 a         1960 c         1910 g         1791 t
ORIGIN      
        1 atcaatactt tgtccgggta atcttctttc agccgacgca gggcggccag attctcctcc
       61 agcggatgct cggcaatctg ctccatattt ttgaagccga taaaaccggt atcttctttc
      121 accagatgat caaaacgcgg cgagacttcg ttggcgataa aaaagccgat cgttttaaac
      181 accacaccgc cccaacctgt gtcgtaggct ttggcacaca tctcatagca gttgcctacc
      241 ggcgaagaag agaggcagaa cgggttggga aacttcacgc cgcaaaaagt aatcgaaaga
      301 tctttcgtta acatgagcaa gctccctcta aatagtgatg aatcgcctcg gcggcttctt
      361 tcccggtttt cacggcatag accatggttt tgtcaccctc aacaatatcg ccagcagcaa
      421 agacttgcgg gtcgcgggtc tggtaatttt gtgttttgat ggtgttacgc tgcggctcta
      481 actccgcaaa ggcatctagt ctggcatgct gaccgacggc gagaataatt ttatctgccg
      541 ccatcgtcag ttcgcccgat aaccgtacat gcttaaacgt gactttattg ccttccacgg
      601 ctactggcgt gaatccatcg atgatcgaaa cgcccagctc ccgggcgctg gtaaactctt
      661 tttcgcttgc cggaaactca tctaactctt cacgcgctac gcaagttacc gcctgacagc
      721 cgagaacttt cagcgtgctg gctacgtcca tcgtgacatc accgccgccg ataattaatg
      781 cgctttgtgg aatgctgata tcgccttgcg cctgtcgtgc acgttgcaag aagtcgacgg
      841 caatctcaac gtcactatgc tcaaacagcg gtagcccgga accgcttgat aaccccacgg
      901 tgaccagtac cgcgcggttt tctgctttca gctgctcaag ggtgagtgtg ttaccgactt
      961 cgttgttgca cttaatggtc acgcccattt tttcaatacg ggcgatctct gcatccagta
     1021 ctgattgcgg taaccggaat tgcggaatgc cgttacgcaa ccagccaccg ggttgtgctt
     1081 ctttctcata gatcgtgacg tcataaccct ggtttgtcag tgtcacactg gcctgcaatc
     1141 cggcaggacc tgcgccaata atcgcgactt tgccgagcgt tttagtaccg ggctgataaa
     1201 tttccatccc ggtttgttgt tcaaaatcag taacaaaacg ctgtaagcgg ccgatatcaa
     1261 tgggagcatc aacaccggca cgggtacaac cgctttggca taatttctcc gtcgggcaca
     1321 ctctggcaca aacggcaccg agggcattat tttcgcgaat tgtctcggca gcgcctttaa
     1381 aattacgaaa gtagattgag cgaataaatt tccccggatc ggtctgtgcc gggcaagcct
     1441 gactacaggg agcgtcgtga cataataaac agcgagaggc ttctttaatc gccagtaacg
     1501 gcgtaaaagc cggagtgagt tcatccagat aattttgttg cggcatgtga tcttccttaa
     1561 tgctatgagt aattaaggcg aacgctaaat atactcgtca tacttcaagt tgcatgtgct
     1621 gcgtctgcgg gttattcggc ccatccatgg gcctcacccc ttatggggcc gctgcaggga
     1681 gcgttcaaat ccgctccatg cggatttgtc gctcacccca gtcacttact tatgtaagct
     1741 cctggggact cactcacttg tcgccttcct gcaactcgaa ttatttagag tataaatatt
     1801 gcgtgctgat attaaggcta tgcgcgtggg gaaatttata ctgtgaaagg attcacaaat
     1861 agctgcggtt cagaatgtta tatccgcagc ttattgagtg aagtaataat tattctcaat
     1921 aattaacaga aaagagaaaa tattaacgat agaaaataag ataaacaatc atgccgatag
     1981 ataaaattcc gaagccgata tatgccacca tataagcgaa aaagagtccg ggattttttg
     2041 ctcgccagac atacaccggt tccggtgcat ttttaacccg tttatcaatc gcgcctgcgc
     2101 gccagccttt ccatgcttcg cggaaacaaa atatcggaat aaggaaaaaa acggcaacga
     2161 caaaaaactg ctgtacatcc ataactactt tccttgtttc ttttgtaatt caagtaactg
     2221 ttcgggtgtg acggcgggat acccctgcgc atcttccggc acctggtgca tagccggaat
     2281 agggaccagc ggccctaaaa aacgcggttc acgtttaaaa atataaaggt cagccagcgc
     2341 accgaaacgg gcggcaaatt cgcgaatacg tactgacagc atatctttcg gtgacggtac
     2401 ggcataacac tgagcctgaa tccccatatg cagcgcaata aataatgccc gctcacagtg
     2461 gaaacgttgg gtgataataa tgaaatcatt agtatcgaaa actttgcgtg tacgcacgat
     2521 ggaatccagc gtacgaaagc ctgcgtaatc gagaacaata tctgatgggt cgacaccagc
     2581 agcgattaaa tctttgcgca tggtcatcgg ctcattataa ctttgcaatg cgttatcgcc
     2641 gctcagtaat agataattta ccttaccgct gttataggca ttaatcgctc cttgaatgcg
     2701 gtagcgataa tactgattaa ttacgccagt acgataatat tttgctgttc cgagcaccac
     2761 accgacctgg cggtagggga gatcctgcaa ttcgtcgtag atataaggcg cggttttcca
     2821 gctcatccag cgatcgaggc cgagcacagt caacaacagc aagccgatca ggactaacag
     2881 gctgaggaac acgcgcttta acatgcagga gactcgatct aaggaaaatt tccatcaggc
     2941 tactttaccc gctggttttg cgcaagaaac ggcaaactgt ttgccgggaa tttcgacacc
     3001 aggagagggc tggcaagccg gacaaggcgt tcacgccgca tccggcacca ggcttaagcg
     3061 agaagcactc ggtcgatact gtgacagccg agagctttca gcgttgcgga ggtggcatcc
     3121 cactgaatca acggcgcatc ggctttttct gccagaaccg cgcgctggat atccgggtaa
     3181 tcataaccct tgagattcaa cagaattaac gctccctgca acggtggcag agtcgggttg
     3241 aatgcggcgt tttcagcgta gctgccactg aaaatacgac cgtctttaca ttccagcgcg
     3301 acaccgcttg gcgacttact gtaaggcatg tgcgaacggt ttgccgctgc aatcgccgcc
     3361 tgagaaagcg catcaccagt cagcgcatag ccgtgatcct gctcgtccat cagcagcgtt
     3421 ttaatctcca gatctttcgg cccaaaggca tccggcagat agtcacgcag cgcgtgtgcc
     3481 tcgcggcccg gcagatgaat acgcagatcc agaccgctgt tcagttcatt cataaactga
     3541 cggcagtgac cacaaggcgt gtagttaacg gtgatggctg caagcgcttt ttcaccactc
     3601 aaccaggcgt ggctgatcgc gctttgttcg gcatgaacgg tttgctgcat tgtcgcacca
     3661 ataaattcca tattggcacc gaaataccag gttccgctca caccgcgcgc aattgcgcca
     3721 acattaaaat tcgacaatgg cgtacgcgca caggccgctg ccagcggaag tagtgcgaat
     3781 gccagcgcgt cttcgtccag ccccgttgcg ctcttcagcg atgagacttg ctccccggtc
     3841 aacaaagcgg ggaagtactt gtctgccaga ataggttcca gtgcagattg caagttatcc
     3901 gcaagttggg caaaagcggt ttgaaaacgt ggatgcatgg cgttgcctca taatcatgta
     3961 atgggataac agtttacgaa cccgttatgg ctttatatgt gatctgaatc tcattaatta
     4021 tgcaacgcgt gaaacttaca tcaaaaatgc gcgacgcatc gcaaatttta gcccattact
     4081 gccagaataa tcgggaaaag gaacggtgcg atcagcgaag taattatccc gcataacacc
     4141 agcgctagcg aactaaatgc accttcctga taatccagct cggcgcagcg cgccgtaccg
     4201 agggcgtgcg aggcagtccc cattgccaga ccgcgcgcag ctttggtacg aatatgcatc
     4261 gcattaagca atgtatggcc aaataccgcg ccgaggatgc cgacgaaaat cacgcaaact
     4321 gcgctgattg ccggaatacc gccaatactg ccgccaaccg ccattgcaat aggcgtggtg
     4381 actgatttcg gcaggattga cgcggcgatt tccggtgaag cgcccatcaa caatgccacg
     4441 gaagtccccg tcaccatcgc aaccacgctg ccgataaaac agatggtgat gatcgatttc
     4501 cagcgcgcgc ggatctggtg tagctgctca tataaaggat aggccagcgc gacgaccgcc
     4561 ggttgcagca gatcgtttag cacttcgcta cctttaaagt agctgtcgta agagatgccg
     4621 gtcagcatta aaaaagggat gatcaccacc attgctacca gcaacgggtt aagcaaggga
     4681 aacttatacc gtgccgccag tttgcgggcg gcaaaaaaga cgatcaatgt cagtggtaat
     4741 gaccaccaga tattagccat cattcttctg atcctttctg acctacgact ttacgttcac
     4801 cgtgcaccag ttgcgaactc cagctcacca ccagaaaaac caccagtgta ctgacagcac
     4861 aggaaaccac taccgggcca aactgtgcgc ggagcaaatc aaaatattgc atgacgccta
     4921 cgccaatcgg cacaaacaat agcgccatat agcgaatcag tacgtagcac cccggattga
     4981 cccattttgc cggaagaatt tgcaaggcca gcaggacaaa caggatcagc atcccgatga
     5041 tgctgcccgg aatggttacc ggtagcaggg aagcaatgaa aatgcctgca tacaggcagg
     5101 cataaatcag gacgaaagcg cgtaaatatt gccagataat gttcagtgtc ttactcataa
     5161 tcaacacccc agatgagatg aattcatcat acaattaatt cgtaaaacgt gctaccgatc
     5221 acattaagaa atcagcgctt attttttcgc tccccggcat tacgcaatgc gcaacgaact
     5281 caggcataca tcaagcatag agagggatta cagtttgcag caatccctct ttgcagacct
     5341 ttaatccgtt gaccataggc gctaacatag cgcctcattt ttttgcgggt gaagatatgc
     5401 gtgtgttact ggctccgatg gagggtgtgc ttgactctct ggtgcgtgaa ttgctgaccg
     5461 aagttaacga ctacgatctg tgcatcaccg agtttgtccg cgtggtggat caactgctgc
     5521 cggtaaaagt ttttcatcgc atttgccctg agctacaaaa cgccagccgg acaccatccg
     5581 gtacgctggt gcgcgtgcag ttgttgggtc agttcccaca atggctggca gagaatgccg
     5641 cccgtgcggt ggaattaggt tcctggggcg tggatctcaa ttgcggctgc ccgtcgaaaa
     5701 cggtcaacgg tagcggtggt ggggcgacgt tactcaaaga tcctgaactc atctactagg
     5761 gtgcaaaagc gatgcgtgaa gctgtaccgg cgcatttgcc cgtcagcgtg aaagtgcgtc
     5821 tgggctggga cagcggtgag aagaaatttg aaatcgccga tgcggttcaa caggctggtg
     5881 ctacggagct ggtggtgcat ggacggacaa aagagcaggg ttaccgcgcg gagcatattg
     5941 actggcaggc gattggcgag attcgccagc ggctgaatat tccggtgatt gccaacggtg
     6001 aaatctggga ctggcagagt gcgcaacaat gtatggcgat cagcggctgc gacgcagtga
     6061 tgattggtcg cggggcgctc aatattccca acctgagccg ggtggtaaaa tataacgaac
     6121 cgcgaatgcc gtggccggag gtggttgctt tgctgcaaaa atatacccgt ctggaaaagc
     6181 agggcgatac cgggttatat cacgttgcgc ggattaaaca gtggttgagt tatttgcgta
     6241 aagaatacga tgaagcaacg gaattatttc agcatgttcg ggtgttgaat aattcccctg
     6301 atattgcaag ggctattcag gcaattgata tcgataagct gcgataatag tggaatcgca
     6361 gtttatcaga gacaatgaat cgcttattca gcttcatcat cttgttgcgc tcctttcatg
     6421 agctaagcca catattgcca ctggcgcaag gagcgcgcag ggggaggaca atcgcctcct
     6481 ccccctgccc ccccgggctc tggcgaacaa aatcgccgct gcgcggtacc ttcagcttat
     6541 ccccttcggc taccgggtcg ggcgcgaggt aacgtccttg taagacgcgc cctcagccca
     6601 catccatgtg ggctgccccg gccttcgggg aacgcttcag cgattttgac gccaccaaca
     6661 ccggagctgt ttgcaaatca agtacacaaa atatctagtt cctgacctga caacttatat
     6721 gccatatctg atttttaaaa tatcatctta aatacgccag tcaccaccag tagcccaatc
     6781 aggaaaataa tcaatacagc ccagagtata attttcattg gcgttccttt atttgtgagt
     6841 gttgaataag tataggaaaa aacgaagccc tttgccgtta tccataaacg attaagataa
     6901 atcggaagat atcattcact tagtctatat ttttctgggt atgtcgtttt attgctactg
     6961 atgtattgcc acgcgaaact aaaaaatata tcgcaacaca cggtaatctc cgcgcaccgt
     7021 ttcttacctg attattcccc catgaatcgt gattcctttt atccagccat cgcctgtttt
     7081 ccgctgttat tgatgctggc cgggtgtgcg cctatgcatg aaacccgcca ggcgttaagc
     7141 cagcaaacgc ccgctgcaca agttgacacc gcattaccca cggcgctgaa aaatggttgg
     7201 ccagacagcc aatggtggct ggagtatcac gataatcagc tcacttcatt aattaacaat
     7261 gcactacaga acgcaccgga tatgcaggtg gctgaacagc gcattcagct agctgaagcc
     7321 caggcgaagg cagttgccac tcaggatggt ccgcagatcg acttttcggc ggatatggag
     7381 cggcaaaaaa tgtcggcaga aggcttaatg gggccgtttg ctctgaacga tccggccgca
     7441 ggtacgaccg gcccgtggta caccaacggt acttttggct taacggcggg ctggcatctc
     7501 gatatctggg gaaagaatcg ggcggaggtt actgcccgcc tgggtacggt taaagcacgg
     7561 gcggcggaac gcgagcaaac ccgccaattg ctggctggca gcgtagcccg cctgtactgg
     7621 gagtggca
//
LOCUS       DAJVUY010000180         7595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.181, whole genome shotgun sequence.
ACCESSION   DAJVUY010000180 DAJVUY010000000
VERSION     DAJVUY010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.181"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            97..735
                     /gene="ytfB"
                     /locus_tag="OQQ72_003640"
     CDS             97..735
                     /gene="ytfB"
                     /locus_tag="OQQ72_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YtfB"
                     /protein_id="HCS2013230.1"
                     /translation="MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVV
                     GFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQ
                     EGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVE
                     GAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR"
     gene            complement(719..1366)
                     /locus_tag="OQQ72_003641"
     CDS             complement(719..1366)
                     /locus_tag="OQQ72_003641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCS2013231.1"
                     /translation="MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK
                     QTVYHHFGNKENLFIKVLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANP
                     WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNI
                     NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE"
     gene            1578..2369
                     /locus_tag="OQQ72_003642"
     CDS             1578..2369
                     /locus_tag="OQQ72_003642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709993.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HCS2013232.1"
                     /translation="MKSTRPVAVITGAARGIGKGCAQELARGGFNLLINDRPDADSVE
                     KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLECLLNNAGISVKKRG
                     DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML
                     AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK
                     GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF"
     gene            2379..3221
                     /locus_tag="OQQ72_003643"
     CDS             2379..3221
                     /locus_tag="OQQ72_003643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HCS2013233.1"
                     /translation="MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRR
                     ELQGEDLQQITRQLAASNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAA
                     CYMQVVGGLPTGTKDLYEAREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLC
                     TLRQALDWCDELDPDGEFGLGVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPT
                     TDLVNDRGMPGDGVINIPSIRRLVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRI
                     AHYC"
     gene            3231..4007
                     /locus_tag="OQQ72_003644"
     CDS             3231..4007
                     /locus_tag="OQQ72_003644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HCS2013234.1"
                     /translation="MSDQPVLFSRVAASCRLTLNREDKCHAINEEMIESLDHYLNEIE
                     NDTTLRLVELTATGDKFFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNIPQLTV
                     ANLNGHTIGGGIELALCCDIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGR
                     QMLMLGKRLTAQEAQAANLIDEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILAL
                     ENKHADYPHQLLAGLMSATQDCQQATRAFAEKSSVSFHNQ"
     gene            4017..5558
                     /locus_tag="OQQ72_003645"
     CDS             4017..5558
                     /locus_tag="OQQ72_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS2013235.1"
                     /translation="MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFL
                     QTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEA
                     YCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGK
                     TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDV
                     LEAGAIEPRRVKLPGILVDGIVEHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHP
                     VRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLD
                     DAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGG
                     FLEIAQNARKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQ
                     SGQEVLYITERAVFQLTAEGVELIEIAPGVEIERDILPYMAFRPIIKHPRLMESSLFT
                     PMEDA"
     gene            5555..7595
                     /locus_tag="OQQ72_003646"
                     /pseudo
     CDS             5555..7595
                     /locus_tag="OQQ72_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT         1881 a         1894 c         2009 g         1811 t
ORIGIN      
        1 tatgaatata ataaaggcgg gtttaccacg gacatcatag cgttagctta ttcataggct
       61 atgattgagg aacaagacgc ggagcaggag gaaaccatgc ccgggcgctt tgaactaaaa
      121 ccaaccctgg agaaagtctg gcacgcgccg gacaattttc gcttcatgga cccgctgccg
      181 ccgatgcatc gtcgggggat cattattgcc gccattgtat tggtggtcgg atttctgctt
      241 ccatctgatg atacgcccaa cgcgccggtg gtgacgcgtg aagcgcagtt agatattcag
      301 tcgcaatcac aaccgccgac agaagaacag ctgcgggcgc aattagtcac accacaaaat
      361 gatcctgatc aggtggctcc ggtcgctcca gaacctatac aggaaggcca gccagaagag
      421 cagccgcaaa ctacccaaac gcaaccattc cagccagata gcggaattga taatcaatgg
      481 cgctcttacc gtgtcgaacc cggtaaaacg atggcgcagc tgttccgcga ccacggactg
      541 cccgctaccg atgtctatgc aatggcgcag gtagaaggcg cgggtaagcc gctgagtaat
      601 ttgcaaaacg ggcagatggt gaaaattcgc cagaacgcca gcggcgtggt gacgggctta
      661 accattgata cggggaataa tcaacaggtc ctgttcaccc gccagccgga tggcagtttt
      721 attcgtgcgc ggtagatgaa gggtcaacca aaagccagct aaggattgtc tctttgatga
      781 ccttacgtct ggcttccagt gcctgggggg aaaccatact gatatgataa accaggccaa
      841 gcgtatgctg gttgatcaaa taatatccgc caagcgcagc aatattaata ttcacctgca
      901 atgggtcgat atctggctta aaaatattgt gtttcttccc ttcatccaat aaggattcca
      961 ttaactgcaa gtgcgcatgg ttaatttcta agagacgctg tgattttgca taatgcacac
     1021 ctttactttg attttcacta tgcacaattt ttaaaaacca ggggttagca atataataat
     1081 cccatgtaaa atcaataatt ttctcaatag ctttttgtgg cggaagatct gagaaatcaa
     1141 gggccttttc tttttgtcga atatcgttcc aggtatattc cagtacttta ataaataaat
     1201 tttctttatt accaaagtga tgataaaccg tctgtttact acaccccgca gccttaacaa
     1261 tattatcgac cctggcccct tcataaccat attcggcaaa ttcattaacc gcgcataaca
     1321 gcagcttttc cttcaggctc tgtacgttgc tggtatcaag atacataacg cttccccacg
     1381 acctcttcgt ggtgactatc ataacctgat ttgatttcag cttcagaaaa aagggcaaaa
     1441 acttgtactt tcatcaggtt atcaaatgtc ctgtgatcgt catcgcatat caaccaacta
     1501 gatggttgac ctttttatcc tccagtcgca agctaatcat caccaaggaa acaaaattca
     1561 aaaaagagag ctattgtatg aaatccactc gtcctgttgc cgtgattacc ggagccgctc
     1621 gcggtattgg aaagggctgt gcgcaggagc ttgctcgtgg cgggtttaac ctgctgatta
     1681 acgatcgtcc cgatgccgac agcgtagaaa aactgcatat cacacaacaa gaatgtttgg
     1741 cggaaggcgt ggaagtgatt tgcttccctg ctgatgtcgg tgatctatct ctgcatgagg
     1801 agatgctcga cgcggcgcaa aaccagtggg ggcggctgga gtgtctgctc aataacgcgg
     1861 ggatttcagt gaaaaaacgc ggtgacctcc tcgacctcga accagacagc ttcgatcaaa
     1921 acattgccat taacacccgc gcgccgttct tccttgctca ggcattcagt aagcgcttac
     1981 tggcacagcc gaaaccggaa gcggagctgc cgcaccgctc gattattttc gtcagttcca
     2041 tcaacgccat catgctggcg atgaatcgcg gcgaatacac cattgccaaa accgccgttt
     2101 ctgccgctgc tcgtctgttt gctgctcgcc tttgtaatga acaaattggc gtttatgaag
     2161 tgcgccctgg tctcatcaaa actgatatga ctattccggc aacggcttat tacgacgaac
     2221 tgattgccaa aggtctggtg ccgtggggac gttggggtta tccggctgat attgcttcca
     2281 ccgtccgcgc gatggcggaa ggtaaactga tttacacctg tggtcaggcg gtcgccatcg
     2341 acggcggctt aagtatgccg cgcttctgag gctgaatcat gagagatctg ttacaacgcc
     2401 cggatttatt cagtatcaat accgcgacac tgggctataa aacgccgcta cccgccatta
     2461 ttgatgcctg cgccgcacgc ggtattggcg caattgcccc ctggcgcagg gagttgcagg
     2521 gtgaagatct ccagcaaatc acccgccagc ttgccgccag taacatgagc gtttccggtt
     2581 tgtgccgtag cacttactac accgcgccga cactggcgga acgcaaactg gcgattgatg
     2641 ataaccgccg ggcgctggac gacgcagcgg tgcttaacgc cgcctgttat atgcaggtgg
     2701 ttggcggtct gccaacgggc actaaagatc tatatgaagc gcgagaacaa gtgaaacaag
     2761 ggattcgcca gttgctgcca cattcgaaag atgtcggcgt gccaattgcg ctggagccac
     2821 tgcacccgat gacagctgcc gatcgctctt gcctgtgcac gttacgtcag gcgctggact
     2881 ggtgtgatga actcgatccc gatggtgagt ttggcctcgg cgtggcggtg gatgtttatc
     2941 acgtctggtg ggatccggat ctcgccagtc agatcctgcg tgccggaaaa cgcatcctcg
     3001 cgtttcatgt ttccgactgg ttagtgccga ccactgatct ggtcaatgac cgtggtatgc
     3061 cgggagatgg cgtcatcaat attccgtcaa ttcgtcggct ggttgaaaac gccggattta
     3121 atggtgctat tgaactggaa atattctcgc cttactggtg gcagaaagat attaacagca
     3181 cgctggatat tagcgtcgat cgcatcgcgc attattgtta aggaatgatc atgagtgacc
     3241 aacccgttct gttcagcaga gtggcggctt cctgccgcct gacattgaac cgtgaagata
     3301 aatgtcatgc tattaacgaa gagatgatcg aatctctcga ccattattta aatgaaattg
     3361 aaaacgacac cacattacga ttagtcgaat taacggcaac cggcgataaa ttcttttgtg
     3421 cgggcggcga tattaaatcg tggtcggcct attcgccatt agatatgggc agaaaatgga
     3481 ttaaacgcgg taatgacgtt tttaatcgcc tgcgaaacat accccaatta accgttgcga
     3541 atctcaacgg tcataccatc ggcggtggta ttgaactggc cttgtgctgc gatattcgta
     3601 ttgcccgccc cggcgcgaaa ttctctaacc cggaagtgat gctcggcatg gtgcctggct
     3661 ggatgggcat tgaacgtgtg cttaatcagg tcggtccggt ggtcggtcgc cagatgctga
     3721 tgctgggtaa acgcctgacg gcgcaggaag ctcaggcggc gaatttaatt gatgaagtgg
     3781 tagaaaaaga acaggtggaa agctggatgg cgaaccagtt agcgcagctg gaaaaatgcg
     3841 gtccggtggc actggcgcat attaagcaac tgattctggc actggaaaat aaacatgccg
     3901 attacccgca ccagctactg gccggattaa tgtccgccac tcaggattgc cagcaggcga
     3961 cgcgcgcctt tgccgaaaaa agtagcgtga gcttccataa tcaataagga aattgtatgc
     4021 gtaagataac aaccgccgag gcactggcgg cgcaaattca ggacggtgcg actattgcta
     4081 ttagcggtaa cggcggcggt atggtagaag ccgaccatat tctggctgct attgaagcgc
     4141 gtttcctgca aaccggacac cctcgcgacc tgacgctaat ccactcgctg ggtattggcg
     4201 atcgcgactg caaaggcact aaccgttttg cgcacgcaga gatgctcaaa cgcattattg
     4261 ccgggcactt tacctggtcg cccaaaatgc aggcgctggt aaaaaataac acgattgaag
     4321 cctactgctt tcctggtggc gtgattcagg cactgctacg ggagatcggc tccggacgtc
     4381 cggggctttt tacccacgtt gggctgggat cgtttgttga tccacgcaat ggcggcggta
     4441 agtcgaatga atgcactacc gacgacctgg tagaactgat tgaaatcgac ggtaaaacca
     4501 aacttcgtta tcgccctttc aaagtggatt acgcgatttt gcgtggcact tatgccgatc
     4561 ctcgaggcaa cgtcagcctt gaagaagaag cgattgatat ggatagctat tccatggcgc
     4621 tggcagcaca caacagcggc ggcaaagtgt tcgtacaggt acgcgatgtg ctggaagctg
     4681 gcgcgattga accacgccga gtcaaattac cgggcattct agttgatggc atcgttgaac
     4741 accgcaaaca gccacaaacc tatcttggcg gttacgacct gaccatcagc ggccaacatc
     4801 gccgtctgag ttctaacgac gctattgaac tggttagtca tccggtacgt cgcctgattg
     4861 cccgtcgggc agcacgcgaa ctggtagctg gcgcttcaac caactttggc tttggtattc
     4921 ccggcggcgt tccaggagta gcgctgcgcg aaggcgttcc ttaccaaagt ttatggctga
     4981 gcgtcgagca aggcgtacat aacggcatga tgctggatga tgcgtttttc ggctgcgccc
     5041 gcaacgccga tgccattatt ccatcactcg atcaatttga gttctacagt ggcggaggga
     5101 tcgatatcac cttcctcggc atgggagaga tggatcagta cggtaacgtc aacgtctccc
     5161 atctcaatgg caatctgatt ggccccggcg gatttctcga aattgcgcaa aatgcccgta
     5221 aagtggtgtt ctgcggcacg ttcgacgcta aaggcagcaa gatcgatata acaccagatg
     5281 gcttgcatat cgcccagtca ggtcaaatcc ctaaactggt taccaaggtg gaaaaaatca
     5341 cttttagcgc cgcctacgca cagcaaagtg gtcaggaagt gttgtatatc actgaacgcg
     5401 cagtattcca gttaacggca gaaggcgttg aattaattga aatcgcgccg ggtgtggaga
     5461 ttgagcgcga cattctgccg tatatggctt tccgtccaat tatcaagcac ccacgcctga
     5521 tggaaagtag cctgtttacg ccgatggagg atgcatgagt cagcttgatg acaccatcct
     5581 tgatgcgctg acgcacgtta ctttcccaaa gggttttgca caggcagagc ccgcatgggt
     5641 tgtcacggta gacggtgtta attacccact ctggcaaaca gatgccctgg tagtcggcag
     5701 tggtgcagca agattacgtg cggcagttga acttaaacgc cgccagcaaa atgtgctgat
     5761 cgctaccgcc gggttatata tggggacgtc ggcatgttct ggttccgata aacagacact
     5821 atttaccgcc gctaccgcgg gcaacggcga caacttcacc aaactggcag aggcactggc
     5881 gagcggtggg gcgatggatc acgacaccgc ttatgtcgaa gcggtaggtt ctctgcacac
     5941 tctaggcggg ttgcaatatc ttggtctgga attaccggaa gatcgctatg gcgcgattct
     6001 tcgttatcaa accgaccatg acgaagccgg gcgtgcaacc tcgtgtgggc cgcgtacctc
     6061 aaggttaatg gtgaaagtgc tgttggaaga agtacagcgc ctcgccattc cagtgttgac
     6121 cagtgcaaca gtgattaaac tgctgcatca gcgtgacgaa aacggcgaag accgcgtggc
     6181 aggggcaatc ctcgcgaccg gtcatcgcgc ccataaccca tgggggctgg caattgtgac
     6241 tgcgcccaat gtggtactgg caacgggcgg accgggcgag ctttatcgcg acagtgttta
     6301 tccacataaa tgcttcggct cgctggggct ggcgctggag gaaggtctga cgctaaccaa
     6361 tctgaccgaa agccagtttg gtataggcac gccgcgtagc acgtttccgt ggaatttatc
     6421 cggcacctat gtacaggtga tcccgtatat ctattccgtg gatgctgagg gtaacgagta
     6481 taacttcctc gcgattacta tcgcaccacc caggagctgg cttcaaacat tttccgtaaa
     6541 ggctatcagt ggccgttcca cgccactcgg gtgatggatt ttggctccag cttgttagat
     6601 atggcagtag cgcaagagca gcaatcaggg cgtcaggtat ttatggattt caatcgcaat
     6661 cctgaagcgg tgccgggtga cctgccgttc tcattagatc gactggacga cgacgttcgc
     6721 gcgtatctgg aaaataacga cgctctggca ccatcgccca tcgaacggct gcaacgaatg
     6781 aatccgctgt ctatctcgct gtataagatg cacggttacg atctcaccac acagcctttg
     6841 cagtttgcca tgaataatca gcatatgaat ggcggcattg aagtggatat ctggggacaa
     6901 acctccctgc ccggctgttt cgccgtgggg gaagttgctg gcacacacgg cgtcactcgc
     6961 cctagtggtg cagcattgaa tgccgggcag gtttttgctg ttcgtctggc acgttttatt
     7021 ggttgcacgc aaaagcggtc tgttgagggt gatgtcgcgc agctggtagc ctcatctctg
     7081 aatatagtca gagaagttat cgctcaggca ctggcaaacg agaacggaat ggcgctggta
     7141 acggtgaaag acaaaatcca ggcgcgaatg tctgattacg ccggatttat ttgtcatgcc
     7201 gataaagttc gtcatgccac ccgtgacgcc ctgctgctaa gtgagtttgt acaacaacac
     7261 ggtttaacca tcaatcacgc aggcgaaatt gccgaactgt ttatgtggcg gcatatgacg
     7321 ctgacttctg ccgccgtatt aacgcaattg acgcattata ttgacgcagg tggtggcagt
     7381 cgtggagcac ggatggttat tgatccacaa ggcaaatgcc tcccacaaac tcgtcgcggc
     7441 gcaaaagaag aatggcgttt tcgctctgaa cgtgctgaag acaaaaatca cagattaacg
     7501 attcaatatt cgcaaggttc ttttattacc gaagtgaagt ctttacgtat gcaaccgtgt
     7561 attaaaggta tttactttga aaaaaactgg ccaga
//
LOCUS       DAJVUY010000181         7528 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.182, whole genome shotgun sequence.
ACCESSION   DAJVUY010000181 DAJVUY010000000
VERSION     DAJVUY010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7528
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.182"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..591
                     /locus_tag="OQQ72_003647"
     CDS             <1..591
                     /locus_tag="OQQ72_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS2013236.1"
                     /translation="VINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAAL
                     KQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWN
                     NAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRK
                     SVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM"
     gene            901..1629
                     /gene="mpaA"
                     /locus_tag="OQQ72_003648"
     CDS             901..1629
                     /gene="mpaA"
                     /locus_tag="OQQ72_003648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HCS2013237.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMANLLRWHPKDAIRPS"
     gene            complement(1604..2569)
                     /gene="ycjG"
                     /locus_tag="OQQ72_003649"
                     /pseudo
     CDS             complement(1604..2569)
                     /gene="ycjG"
                     /locus_tag="OQQ72_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
     gene            2688..3194
                     /gene="tpx"
                     /locus_tag="OQQ72_003650"
     CDS             2688..3194
                     /gene="tpx"
                     /locus_tag="OQQ72_003650"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCS2013238.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(3238..4779)
                     /gene="tyrR"
                     /locus_tag="OQQ72_003651"
     CDS             complement(3238..4779)
                     /gene="tyrR"
                     /locus_tag="OQQ72_003651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HCS2013239.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(4927..5988)
                     /locus_tag="OQQ72_003652"
     CDS             complement(4927..5988)
                     /locus_tag="OQQ72_003652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HCS2013240.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREICRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(5985..7382)
                     /locus_tag="OQQ72_003653"
     CDS             complement(5985..7382)
                     /locus_tag="OQQ72_003653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HCS2013241.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
BASE COUNT         1860 a         2078 c         1813 g         1777 t
ORIGIN      
        1 gtgattaatc aactggcaga taaacaaacc attaaacaaa ctttatttgc ccgtcagcca
       61 gcaaaaatcc acaaacccta tccaactaat agcaagatta ttatgggaga tgtactgaat
      121 catgcagcac tgaagcaggc catgcaggga caggacgttg tgtatgccaa ccttacgggg
      181 gaagatttag atattcaggc aaattcagtg atcgctgcga tgaaagcctg tgatgttaaa
      241 cgtctgatct ttgttctttc cctcggtatt tatgatgaag ttccaggaaa atttggcgaa
      301 tggaataatg cagttattgg tgagccccta aaaccattcc gcagggctgc ggatgcaatt
      361 gaggcttctg gactggaata tacaattctt cgccctgcct ggctgactga tgaagatatt
      421 attgattatg agcttacctc acgcaatgaa ccattcaaag gtacgatcgt atcacgtaag
      481 agtgtcgcag cattaatcac agatatcatc gataaacctg agaaacacat tggtgagaat
      541 ataggtatca atcaacccgt gactgatggt gacaagccat tattcatgta aatcaattac
      601 atagttacca tcgtaatgta ctatgtgcag tacgatttat taaacttatt aaggtgaact
      661 gatcaatccg atgcgattaa catgtgtaga accagtaaga ataaaatacg ccatgtatat
      721 aacattacga cttacatcta agtcagcata attctaatat ctgcacatca ataaaaatgc
      781 aaacaacttc cggcaaaaaa agtgatacaa gatcgatgac atagcgttga agaaaaggat
      841 ttgataatcc gcaaaatttg cacaacactg cctgtaatac ttcctgaacc agagacgatc
      901 atgaccgtaa cccgcccacg cgccgaacgc ggcgcatttc cgcccggaac agaacattac
      961 ggacgttcat tattgggcgc gccgttaatc tggtttcctg cccctgcagc cagccgcgaa
     1021 agtggtttga ttctggctgg cactcacggt gatgaaaact cttcggtcgt cacgctctcc
     1081 tgtgctctgc ggacgttgac accttctttg cgccgccatc atgtggtgct gtgtgtgaat
     1141 cctgacggct gccagctggg gttacgggcc aatgctaatg gtgtggattt aaacagaaac
     1201 tttccggcgg cgaactggaa ggaaggtgaa acggtttatc gctggaacag cgccgctgaa
     1261 gaacgtgatg tcgtattact gacaggtgac aaacctggct cagaacctga aacccaggcg
     1321 ctgtgccagc ttatacaccg cattcaacct gcctgggtgg tctcattcca cgatccactg
     1381 gcctgtattg aagatcccag acacagcgaa ttaggcgaat ggctggccca ggcgtttgaa
     1441 ttgcctctgg taaccagcgt cggttatgaa acgcctggct ctttcggcag ttggtgtgca
     1501 gatctcaact tgcattgcat caccgcagag tttccgccca tctcctccga cgaagccagc
     1561 gaaaaatatc tctttgcgat ggcaaacttg ctgcgctggc atcctaaaga tgcaattcgc
     1621 ccgtcgtgaa ctgaagcgcc ggttccacat ctaccgccag ccaggtcggt ccgtcaagat
     1681 cggcgaaact gacctgcggc accagcggta aagcggcgct aatggcacga gaggtacaca
     1741 acatgcagcc cagcatcaga ctgaaacctt gtgcacgcgc ttcagtcgcc agcgccagcg
     1801 cttccgtcag accaccggtt ttatcgagct taatgttaac catctcatag cgccctttca
     1861 gcgccttcag attgctacgt gtatgacaac tctcatcagc acaaatcggc aacggatgaa
     1921 taaaattctc cagcgccgca tcgtcctgcg caggaagggg ttgttcaagc atcgcaacgc
     1981 ctaaatccgc caatagctgg caacgcgccg ccaacccttc tgcacgccag gattcatttg
     2041 catcaacgat cagcgtcgca tcgggcacag ctgtgcgaat tgccaccatc cgctcactaa
     2101 taagatggtt atccagcttc actttcagta atttcgcgcc tgcctgccag agtgttgatg
     2161 cactattggc catctgatca ggcgtaccga tgactaccgt ctgtgcagtg ataactgtct
     2221 cgggaagcgt tatgccgatc aaatcagcca gcgattgctg ctgttttcgc gcggccagat
     2281 cccacaatgc acaatccagc gcattacgtg ctgcgccggc agggagaatt ttttgcaact
     2341 cctcccgtgt cagccctttc tctaattgcg acacgacgct cataatttgc gccattaccg
     2401 aggcatcact ttctccataa cgcggatacg gcgtgcattc gccggtgcct ttaataccct
     2461 cttcttccag ttcaaccacc accacgcgcg cttcactgcg acttccccgg gcaatcacaa
     2521 acggggtatg taagggctag gcttcctcaa ataccttaac ggttctcatc tttactcctt
     2581 gttgtcgcgg tggtctgcgg attaagcgca aatagcgttt gctgtgttat tgacagttag
     2641 cataaactag gtgtgacgtt aactatatgt aaacaggaaa gataatcatg tcacaaaccg
     2701 ttcatttcca gggcaacccg gttacagtcg ccaattccat cccgcaggcg ggtagcaaag
     2761 cgcagacttt tactctcgtg gcaaaagatc tgtctgacgt caccctcggt cagtttgcgg
     2821 gtaaacgcaa agtgctgaac attttcccga gtattgatac cggtgtttgc gccgcatcag
     2881 tacgtaagtt taaccaactg gcaaccgaga tcgacaacac cgttgtgctg tgtatttctg
     2941 ccgatctgcc gttcgcccag tctcgtttct gcggcgcaga aggtctgaac aacgttatca
     3001 ccctctccac tttccgtaac gctgaatttc tgcaagcctt cggtgtggca attgctgatg
     3061 gcccactgaa aggtctggca gcgcgtgccg ttgtggttat tgacgaaaat gacaatgtga
     3121 ttttcagcca gctggtggat gaaatcacca ccgagccgga ttacgaagca gctctggctg
     3181 tactgaaagc ataagttaat atgcctgatg gtgttgcacc atcaggcata ttcgcgctta
     3241 ctcttcgttc ttcttctggc ttaagccata ttcccgcaac ttattggcaa tcgcggtatg
     3301 tgaaacgccg agacgttttg ccagtttgcg cgtgctggga taattgcgat aaagctgggt
     3361 taataccgag cgttcaaaac ggctggtgat ttcgtccagc gaaccttcca tcgcatcttc
     3421 gcccacggct accgttgcgg cgtcataatc cggcaacaaa atatcctgtg gacgcagctc
     3481 ataaccgtcc agttgtgtca gtgcgcgata tatagcgttc tttaactgcc gcacatttcc
     3541 cggccacgca taacgcgtaa gtacagtatt caggtcagcg gccagtttcg gacgcggcac
     3601 gccctgctcg tcggcaaagc gggcgacgaa cagctcagtt aacggcatga tgtcctgcgg
     3661 acagtcacgt agcggcggca gattgagcgt caacacgttc agacgataat agagatcttc
     3721 acggaacatg cctttttgca ccagttcgac cagattcttc tgcgtagcgc aaatcacccg
     3781 cacatcgaca tgcacctcat ggtcttcgcc aacccgacgg aaagtgccat cattaagaaa
     3841 acgcagtaat ttcgcctgca tccgtggtga catttcccct atttcatcca acagcaccga
     3901 accaccgttc gcctgctcaa agaatccttt cttcccttcc ggagcatgac caaacagttc
     3961 actctcgacc gcatcttccg gtatagacgc acagttcagc gccaggtaag gtttgcccgc
     4021 tctggggctt gcctgatggc aggcgtaggc aaagagatct ttacctgtac ctgtgtcacc
     4081 cgtaatcagc agcggcgcgc ttagcatcgc cagtttctgc gcctgttcga caacatgctt
     4141 cattttcggg ctgacggcga caatttgact gaaggcgctg acgtcctggg cggcgacatt
     4201 ttgcaactgg cggcccatac gaatcgttga tcgcaacatc accaccgcac cggtcaggac
     4261 gtgttgatca ttttcatcct gaagataaac aggcgtaatc tccatcagga aattctgccc
     4321 attaataacg acatgctcgt tatgcgaatc ttgcggttcg ctttccagcc aacgtaaaaa
     4381 attaaagccg ttaatcaatt gtgcggcggt atggttgcgc aggcgatcca atttttgccc
     4441 aaaaagctga cagctcgccg ggttcgccat atccactttg cttttcatat cgacagagag
     4501 cacaggttcg ggcaacgcct ccagtaacgc gctcaacgcc agatgctcac gttcggaagg
     4561 catccacggg acagtacgca catcggtaac acctgcaata cggcgtattt cggccatcag
     4621 actgctgaaa ctctcaaact ccagttcagc aaaattgagg tagattcgcc caatgggatc
     4681 aatctcaata ccgcgtaaat caatgcctct tagcacgagt agatcgagta attcgcgggt
     4741 cagaccgagt cggtcttcac aaaagacttc cagacgcatg ggaaccttca cctgaaaaaa
     4801 gaacaattaa tatgatgata tgacactatt tggatagcag gaaggtttct gtcaacaatc
     4861 attgacacaa agacggaaaa acgggcactt cggcgtaaag atatccggtc agcacccgat
     4921 attgcattat ttttcgctgg gcgttttgcc tttttgcagc gtttctttca cctgaccgat
     4981 aagctgacga cggaaatccc cgaggcgagg tttgtcatcg tcaatccacg gcagcgggcg
     5041 gcaaagctcc atagctttaa tcccgagtcg tgccgtcaga agtccagcac caattccctg
     5101 agctgcgcgg gtagacaaac gagcagcgag atcttgcgac atccagtcca tccccacttc
     5161 gcgcaccagt tcgctggctc cggcaaaagc gatattcagc aataccagct taaacagacg
     5221 caaacggctg taatacccca gttcaatgcc atacagcgtg gcgatgcgat taattaaacg
     5281 cagattgcgc caggcgataa acgccatatc gaccaacgcc agcgggctga ccgcaatcat
     5341 caacgttgat tccgccgccg aacggcagat ttcgcgccgc gcctgggcat ctaaaactgg
     5401 ctggaccaaa tgcgcataca aactgaccac ttcacggtcg ttttgcgttt catggattga
     5461 ggcataccag cgttgcagcg ctggatgaga ctgatcaata cccgcctgct gcgccagttt
     5521 ttcgcaaaat gcgcggcctt tgcccgtgcc gtggctgtgc aacaaatcgc gcgcttcgtc
     5581 gcgttcatgg gcgcgctgtc gcaagcgcca taagcgccgc cactctgtta ccacagaacc
     5641 tacgccagcg ccgataatca atgccccagc ggcacatcca cccagcgcca cccagtcctg
     5701 agtttgccag gcattcattg tccactgtac accctgcccg acaacgcttg cgccaaacag
     5761 agccagcccg cccatcacca ttttgcgcca caggctgcgt ttcggacgta acgctgcatc
     5821 cattaccgct tcaacttgcc cctcttcttc aggcgcttca tcgagcgtgg ccggggcaaa
     5881 attttgcgcc tgattttcgt caaaggtctg ctgcgccctg aattttggat tctgatcgac
     5941 ctccagcgga ccgtcgaaat caatacgtgg ttttaacggt tcggtcatcg caatttatct
     6001 cctattaaaa attccagcgc ggcatcaaga cgaatatgcg gcagcggttt gtcgacatcc
     6061 atcacctgcg ggcgaaacgc ttcaaactgg aacccttgtt tgtcccagaa cgcctgaccg
     6121 ggcaaacgcg caggaacttc accgggataa acggtgagtg gcgcaccatc gctgagccgg
     6181 ttaccgcgca atgccggaat tttctcgccg ttgacgtcaa taatgccgct ggtggtcgcc
     6241 tgcaccgagg ccagccccag gcaatccata ctaatccctt caaacgccgc attttgccag
     6301 gcatcctgaa tcagttgttg cagtaatgaa accatattgg cgtgctgatc gatggtcaca
     6361 tggtccgctt tagtggcagc aaacaatagc ttatcgataa ccggcgaaaa caaacgccgg
     6421 aacaaggtac gctgcccgta gtggaaactt tgcatcagct gcgtcagtgc cagacgcata
     6481 tcattaaatg cctgtggccc actgttgaga ggttgcaggc aatcaaccag cacaatctgg
     6541 cggtcaaagc gcagaaaatg attcttatag aaccccttca ccaccttctc gcagtaataa
     6601 ttaaaccgct cgcgcagcat tccggcattg gtgtgcttat cggcctgcgc cagtttggac
     6661 tcgccccagg tatcgacatc cggccacggg aagaattgca gcgcgggcgc acctgccata
     6721 tctcctggca agacaaagcg ccctggctga ataaagtgca gcccctgctg tttacagtgg
     6781 tggagataat cggtccacgc ggcggcaatg tctgccagcc ggttttcgtc ggcaggtgct
     6841 agcgggtcca gcccttcgca catcattcgc catttgaccg accattcgcc gcgctgacca
     6901 ttgagtaagc ccgtcatctg gcgtgaccag cttaaatagt cctgcgccag catcggcagg
     6961 tcgagcaacc attcgccggg ataatccaca atctccagat acagcgtgga ggtgtccttg
     7021 aagtggcgta gcagcgaatc gttcgattta aaacgtagcg ccaggcggat ttcactgacg
     7081 ccgcgcgttg gcgtcggcca ggcgggagga tcgccatata actgcgccag tccttcatca
     7141 tatgtgaagc gcggaatgcc aaagtcacgc tgaggaatgc gttttacgcc cagcaggcgc
     7201 tcttcacgca ccgcgcttaa cagcggcaag cgtgctccgg cgtgaatatt gagcaactga
     7261 ttgaccatag cagtgataaa cgctgttttg ccgctgcggc ttagtccggt tacggcgagg
     7321 cgcagatgtc tgtcgacacc ccgattcacc agcgcattaa gttcattttt aagtcgcttc
     7381 attgctgtcc tgtgctgctc tgaagaccag aaaaaaatca ttcgtaagga tatgaatgtg
     7441 ggggccaggc cattgattat caactgcccg tgttgtcatc gacgggcgaa ctccataaga
     7501 tgtgcagcat tcacgttcgg acggagtt
//
LOCUS       DAJVUY010000182         7471 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.183, whole genome shotgun sequence.
ACCESSION   DAJVUY010000182 DAJVUY010000000
VERSION     DAJVUY010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7471
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.183"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..339
                     /locus_tag="OQQ72_003654"
     CDS             <1..339
                     /locus_tag="OQQ72_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS2013242.1"
                     /translation="QTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPII
                     FYTFPAAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNF
                     MAEESSQPEE"
     gene            714..1148
                     /locus_tag="OQQ72_003655"
     CDS             714..1148
                     /locus_tag="OQQ72_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS2013243.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF"
     gene            1159..1800
                     /locus_tag="OQQ72_003656"
     CDS             1159..1800
                     /locus_tag="OQQ72_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013244.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE"
     gene            1797..2147
                     /locus_tag="OQQ72_003657"
     CDS             1797..2147
                     /locus_tag="OQQ72_003657"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013245.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
     gene            2841..3452
                     /locus_tag="OQQ72_003658"
     CDS             2841..3452
                     /locus_tag="OQQ72_003658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013246.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELSVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            3990..4532
                     /locus_tag="OQQ72_003659"
     CDS             3990..4532
                     /locus_tag="OQQ72_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS2013247.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQTLN"
     gene            complement(4525..4884)
                     /locus_tag="OQQ72_003660"
     CDS             complement(4525..4884)
                     /locus_tag="OQQ72_003660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013248.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ72_003661"
     CDS             5318..6142
                     /gene="dinD"
                     /locus_tag="OQQ72_003661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HCS2013249.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            6434..7051
                     /locus_tag="OQQ72_003662"
     CDS             6434..7051
                     /locus_tag="OQQ72_003662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS2013250.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(7048..7471)
                     /gene="ligB"
                     /locus_tag="OQQ72_003663"
                     /gene_synonym="yicF"
                     /pseudo
     CDS             complement(7048..7471)
                     /gene="ligB"
                     /locus_tag="OQQ72_003663"
                     /gene_synonym="yicF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312549.2"
                     /note="this ligase is similar to LigA but it lacks the
                     C-terminal BRCT domain; catalyzes strand joining of nicked
                     DNA in the presence of a divalent cation and NAD+;
                     internal stop; incomplete; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
BASE COUNT         1996 a         1836 c         1907 g         1732 t
ORIGIN      
        1 cagacggagg cgtttttgaa tgcctatggg ctgagtcgat tcgcgccgct gggttatgac
       61 ccgcgcgatt tacccatccg tgatttagcc gggtacagga agaaggggaa ccacgacggc
      121 gacccgataa ttttctacac cttcccggca gcgtttgagc aggagattgc aaagggcttc
      181 aataccaaac agtttgccga agttctaaag aatgcaggaa tgcttacacc accaacgagc
      241 gggcgaggct atcaggggcg agtaagggag gatgggcgac agattcgcgt ctatgtactc
      301 aatttcatgg cagaggaaag cagccagcca gaagaataat tatttcttca catgcgtagt
      361 tttagtgttg tctcggttgt ctttgttgtc tcaatttgta attgagattg atttataagg
      421 attttatttt aatttctgag acaacaccga gacaacattt agccattttg agacaacagg
      481 gcgaaagtgt gtttttagtc tggcaggcag tgagacaaca tttatgccgg gtgagacaac
      541 acgaaattgc aaatgttgtc tcagcaaaac ccagacgtgg cgcggcctgt agagccgtga
      601 gacaacaaag acaacagaga caacactatt tttgcttact atgaaaaaaa atcggcaggt
      661 gtcccacatt aagaaatcgt cattagcaaa actaataatc cagtgagggg aaaatgacag
      721 cacaaatttc agcatacggg cggctggtgg cagatcccca gacccgcacc acaacgaacg
      781 gtaacaacat ggctatggcg cggctggcgg tgtctctccc ctgtaatgcg gcagaggcgg
      841 gagagtcaac cttctggctg ggcgttattg cttttgggaa gcaggccgat gcgctggcaa
      901 agcaccagaa aggcgacctt gtgagcgtgg caggcaatat gcaactcaac cagtggacag
      961 ggcaggacgg cggtacacag caggggtatc aggtagtagc cgacagtgtg atcagcgcca
     1021 gaacggtacg ccccggcggg aaggcaggac agcggggaca ggcaacggac gcgctgagac
     1081 gtgcgcagca gccatcccgt gatgaatacg accaacgccc accattcgac gatgaaacgc
     1141 cattctgaga gggaagatat gagtacgcaa cccatcatta ttgagttcgg cagctatcgc
     1201 tggcccagac atcttgcaat acatgaagca gatcatgcga tagccgcatg gtttttcggc
     1261 atacaggagg tagaaattgc gttatcgggt aataaccgag tggcaaaaac ctaccttagc
     1321 ggcgatgttg atgaatgtgg agctgtcgcg gtatggcacg ccaactatcc acggaatgtg
     1381 gctgaggtta agtcttacac cctctcgaat gatgacacca ggttacgtct gatagaccag
     1441 gtatgccggg ctatggttat ctctctggct ggtatcgtcg cgcaatcacg ctatacgggg
     1501 gatgatatta acgcactgat ggaaacgtcc gggaaagcag acatgaaaaa tgttcgtgat
     1561 ttatcagagg tataccgggt ggctggtggg gaggatgctg atatacagag aatatccctt
     1621 tcccgtgctg aggcgctgat tgccctgaaa tggtgggatg ttatcgcgct ggcgaaaata
     1681 ctggagaacc gtaaccatat gcctgccagc aacttccagc gcattatggg tgatattgac
     1741 aagcctgtac caaagcctat gacgctggct gaactggatg aattggtggg tgaagaatga
     1801 agccatacat tctggcagcc ggcctgatct cctcggcacc ggcactatct gctatccatt
     1861 gtgggggctt taccatacag ccagaccgtt atcggacaac gattaacggc gatgtggttc
     1921 atattgttga tgcgcaattt tacggcgcac cgcgagactt tagccaggcc gccataaagt
     1981 tattgccgga tgccattacc actaccgata ggcaataccg cctagagacg cagggaggca
     2041 atgccttgct tgagttgatg accagagaaa acccgccacg tgtgcttaat cgtgagcgct
     2101 gcgatgccgg gttaacaagt ttcggttggt acacttctgc gccgtgatgt tcgttccgag
     2161 cgcagcctaa aatattggac tgttcttgac ggatttaaaa ctctaatgga gccaagtcct
     2221 tgccagtagc gggctaggag cctaattgtg attcaggtcg tcaaaaatat tcaggtttgc
     2281 ggcattggtt cgcagtacgc agtccggtac gcggcaaaac tgcgcattta acgtgcgtac
     2341 cacctgacga attctaacgc cggcattgca aacagatgcg tgcgcaaaat ggctaagacg
     2401 tctgatattg ctggctttgg ctcaatcagt ttggaggtgg cggtatcagt acgatgctaa
     2461 tttttgctaa ggttttagta cgcaactcag gtacgcactc tcaccagata cgaaaccgat
     2521 tcgcagttgc gtaccagcct gtaaggcgca ttatcgctgg gtttctacag tcgaatgcag
     2581 tacgcaaagt ggaaaatcct ccgaatacga aacccgagca ttgcgcagta aattgcgaat
     2641 tgcgcagtta acaaaatatc tccgcaaaac gaaacggata tcaatgcgca aaccatcctc
     2701 aacccccgcg cggttactgg ctttattgat gtgaaattgc aaaattggtg cgcaatttac
     2761 agtaaaatac gcatattatt tcgtattcaa tttgcgcacc gttcgcagtt aatgcgcagt
     2821 aattcgcagg aggccagcca gtgagagaca gaacgcgcag ctataccacc gacctgcccc
     2881 gtatagggtt gccattcctt gcgaacatgc gtagcaggct ggcggatgct gaaccgggta
     2941 cgcagcttta tacccagacc gaaagcggaa cgttgtatgc cttccggcaa gccgacagct
     3001 acgccatgac aatcaacggc gtgacgcggg ctattcgcac cacaaccacg aaggccgggt
     3061 atggcgtccg ggaatggtac gcttgccccc actgtatgaa gcgggctgca aagctgtata
     3121 tcggcaagaa agacattggc tgccgggcgt gctggaaact tcactataaa agccagagtg
     3181 ccgacatact ggacaggatg cgcatgaaga tacgccagca gcgatgcgcg atatggggca
     3241 gcaatgacct tgccaataat ctgtttaatg acattcgcat gttcccaaaa ccaaagggga
     3301 tgcgctgggc tacgtttgac aggaagcggg cagagttatc agttatggag atggcttact
     3361 ggcaggcatt cagcccggta gtggacagaa tcacgggcgt tattgagcgt aaagcaggaa
     3421 aagcagccag aggcattggc ctgactctat aaaagcaaaa cgcccgcacg gggcgtcaga
     3481 gaacgggata gacttctgcg acaatttgca ttcgccgcca atatagcaag ccgtccacat
     3541 caagcaataa actatcaccg ggagggggag gccaaatctc tgcaatcctg agccttaagg
     3601 actgcccgcc ccatcgtttt ttcatacccg cgaaaaatga aatttaatcc gggcgtgttt
     3661 catccttcca gagggtatga cgtatgacac cacgcgaaat agccttattg accatcgcca
     3721 aacttgagca tggaggccac cagcttacac aggcagatca acgggagata gaacgctcag
     3781 ttaatgccga tatagcccgg cgcgacaggt tccgcgaaat gatgcgagca cctgcctacc
     3841 agtggaagaa gccagcgccg cgcaggtaga tacgggatta ttccgcatgt aacttatgcg
     3901 tattaagcaa atttccttta ttcaccttta cagaattgtg agtacgtcag tatcgttatc
     3961 cttccgattc gcatttattc aggatttgca tgtaccagct aaagataacc atccgagaca
     4021 gcaaaccacc tatatggcgg cgtgtgctgg ttccagagca aatccccttt agtgaacttc
     4081 acgcggtgat ccagttggct tttggctgga atgacgaaca cctgtatatg ttcgagaaag
     4141 ggcgtaaagg tgatcccggt agcgagtatc gcgtatgggg tgaggatgaa agcatgggta
     4201 atgcggcaat cacaccacta tgggcagcgc tccagaatga tggtgacaag ctggtttaca
     4261 cgtatgactt tggcgactgg tgggattgcg tcattgtgct ggagaagcaa acacacgata
     4321 cgagcaatca gcccattagc tgcctgcgtg ggaaaggcac caccccggtg gaaaactcag
     4381 gcggcttgca tggttacaat gaattgctat tacaggccag agagtctgat aatcctgagc
     4441 aggccgagat ccacaatttc ctgatgctgg atattgagcg ccgggtttac gacctgagca
     4501 gcatcaacga cagattgcag actcttaact gaccctcata tattcgcctg atattgcgtt
     4561 atcagcgccg ccagtatcgc gcataacagc gcactgaccg ggcaaaccgt agcgcacgac
     4621 cgttgcgtta gtctcaccgc cgcgccgtat ctggcgcgat tcatacactg tcacccgctc
     4681 aagcagtcca ccagcaacca tgctttccag tgtgcgccgg gttgattcga gctggtgacg
     4741 cttatcgaac gacaccatgc catgaagcag gtaggccaca cccgacacat cgaacggcgg
     4801 cgcaccaatc tcaccagtca cccattcgag gttatccggt tcaaagtagc taagtatctc
     4861 ttttttgcgg ctggtcattc tcatagctgg caggttcctt attgtgggat agcactatca
     4921 tacaataagg cgcaaaagat aagaggccag aacagcaagc atgagagcat aaaacgagca
     4981 gccaaagaca gcgcctcaaa ataccgtgta cacaagggtg tacctactga gaaaacgcat
     5041 tacaagaaac acagcaacca cgggcgttta aagccactac tcaataaaca gattcaactc
     5101 gtaacgccaa ttcttacttt tcagccttca caaatgccgc ccactcaaac agagcggcat
     5161 ttttcttccc cgcaacttca attctgtttt gcgtgcctgc tccagatttt gcgatgtttt
     5221 tttgcccagc acactgagaa cgtgagatac tcacaactgt atataaatac agttacagat
     5281 ttactttctt tgcaatcgat atcacatgga gtgggcaatg aacgaacatc atcaaccttt
     5341 tgaagaaata cggcattatg gcactgaagg gcaagaattt tggtcagcta gagaattggc
     5401 accgttactg gattatcggg actggcgcaa ttttcaaaag gtactggccc gcgcgactca
     5461 agcgtgcgaa gccagcaatc aagctgcatc tgaccatttc gttgaaacca ccaaaatggt
     5521 tgtattaggt tcaggggctc aacgagaact tgaagatgtt catctctccc gctatgcctg
     5581 ttacctggta gtacaaaacg gcgaccctgc gaaaccggtt attgcggcag ggcaaactta
     5641 ttttgctatc cagacccgac ggcaggagct ggctgacgat gaagctttca ggcaacttcg
     5701 tgaagacgaa aagcgtcttt ttctgagaaa tgaattgaaa gaacataaca aacaattggt
     5761 tgaggcagcg cagcaagctg gggtagcgac agctatcgat ttcgccatat ttcagaatca
     5821 tggttaccgg gggctgtatg gtggattaga tcagaaagct attcatcagc ggaaggggct
     5881 gaaaaagaat cagaatatcc tggatcatat gggttcaaca gaactggcgg ctaatctctt
     5941 tcgagctacc caaacagaag aaaaactcaa gcgggatggc gtgaattcaa aacagcaagc
     6001 aaacaccaca cactttgacg tgggtcgcaa ggtgaggcaa accattcagg aacttggcgg
     6061 aaccatgcct gaggagttgc cgaccccgca ggtcagcatc aagcagttgg aaaacagtgt
     6121 aaaaattaca gagaagaaat agcagaaact aaaaactctt tttcttaatt gagatacccg
     6181 atgcgtaagc caaagtccag gtgcagtgaa cacaatggct aaacattgca cctttctttt
     6241 ccacccctca attttaacct attttttctt atgcattttc tcagacaaga actcagaata
     6301 atgcatctac gctacagaaa atagcgattt cacataacta caagttatca atttcctctt
     6361 accttaaaaa atctcaatcg tgacaatgcg cacaaatcgc taccctgcca gacagatttt
     6421 tagggagaga accatgctgt tacacatttt gtatttggtt ggcatcactg ccgaagccat
     6481 gacgggggcg ctggcggccg gacgacggcg catggataca tttggcgtaa ttattattgc
     6541 gaccgccacc gcaattggcg gagggtcagt gcgcgatatt ctgctgggcc actatccgct
     6601 cggctgggtc aaacacccgg aatatgtgat tatcgtcgct accgccgcag tactcaccac
     6661 tatcgttgct cctgtaatgc cttacctgcg caaagtgttt ctggtgctcg atgcgctcgg
     6721 actggtggtc ttttctatca tcggcgcaca ggttgcactg gatatggggc acggcccaat
     6781 tattgccgtt gtcgcggcgg taaccaccgg cgtgtttggc ggcgttttgc gcgatatgtt
     6841 ctgtaaacgc atcccactgg tattccagaa agagttgtat gctggtgtct catttgcctc
     6901 cgccgtgctg tacatcgcgc tgcaacacta tgtttctaac catgatgtgg tgattatctc
     6961 caccctggta ttcggctttt ttgcccgctt actggcgcta cgtcttaagc tgggattacc
     7021 ggtcttttac tacagccacg aaggtcacta aggttcaaaa cctgtgatct gctgggcagc
     7081 cagccaactg cccagcttct tgatttgcgc attttccttc cattcaataa cctgtctggc
     7141 gcgcccagat ccagtccccg gcagctgctg tcagaactgc tccgtgctaa ataaaagttg
     7201 cgactaggac cgttcatcac tggcattaag cgccgcccgg gttagcggta ttcccattgc
     7261 catcacccag cgagtaaaag gctgcttacg agccagatta aactgatgcc ataactgcgc
     7321 acttttactt ttcgcgatcc ccggcgtgtt ctgtaattgc tctggcgtta ataaaagcca
     7381 agaaaagata tgctcaaagc gatgagtctg atgcagcgcg cgccaaccgg cctcaccaat
     7441 gccatccagc ccaagaacct gttttgaccc c
//
LOCUS       DAJVUY010000183         7409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.184, whole genome shotgun sequence.
ACCESSION   DAJVUY010000183 DAJVUY010000000
VERSION     DAJVUY010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.184"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..1459
                     /locus_tag="OQQ72_003664"
                     /pseudo
     CDS             1..1459
                     /locus_tag="OQQ72_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            1470..2543
                     /locus_tag="OQQ72_003665"
     CDS             1470..2543
                     /locus_tag="OQQ72_003665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2013251.1"
                     /translation="MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSG
                     YLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHS
                     NINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
                     IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMANVYIRGDITAPQSCEIN
                     NLQPVYFDFKEIPAADFSSVVGSAVITHKITKTVTIECENLGILNTDDISTSFYATEP
                     NTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYGEKLGSVTFSAAPAS
                     LTGARPAPGQFTATATITVEIVR"
     gene            2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ72_003666"
     CDS             2791..3831
                     /gene="pstS"
                     /locus_tag="OQQ72_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HCS2013252.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
     gene            3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ72_003667"
     CDS             3918..4877
                     /gene="pstC"
                     /locus_tag="OQQ72_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HCS2013253.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ72_003668"
     CDS             4877..5767
                     /gene="pstA"
                     /locus_tag="OQQ72_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HCS2013254.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ72_003669"
     CDS             5858..6631
                     /gene="pstB"
                     /locus_tag="OQQ72_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HCS2013255.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ72_003670"
     CDS             6646..7371
                     /gene="phoU"
                     /locus_tag="OQQ72_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HCS2013256.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
BASE COUNT         1863 a         1717 c         1933 g         1896 t
ORIGIN      
        1 cagatgttga tgtcagcgtg ggtgaattgc gcgatgaaga cggatttaca ccggacgtcc
       61 ttcaggcgca aatacttcat ggtttttccc acgggatcac tttatatgga ggtatgcagg
      121 ctgctgaaaa ttatggttct gcagctctgg gtgtcggtaa agatcttggc gctttgggcg
      181 caatttcttt cgatgtgaca catgctcgtg cgaattttag ccatgatgat acagaaacgg
      241 gtcagtcata tcgctttctc tattcaaaac gatttgacga cacagacact agcttgcgcc
      301 tggttggcta tcgttactcc accgagggct actataccct caatgagtgg gcatcgcggc
      361 gcaacagccc tgaagacttt tgggaaacag gtaaccgacg tagtcgcgtg gagggaacgc
      421 taacgcagtc gttggggaga gattatggca atttatacct gacattaagc cggcaacaat
      481 actggcatac cgatgatgtc gaacgattaa tgcaatttgg ctacagcagt agctggaagc
      541 gtctctcgtg gaacgtctcc tggagttatt ccaatactgc cagacagggg acggggaaca
      601 accatgccag tgataacacc agtgagcaga tctacatgct ctctttatct gttcctttat
      661 cgggctggtg gggtaatagt tacgccacct attctgtttc gcaaaacgat aattccggta
      721 gctcacatca agcggtacgg cgctggaaag aaataacctt tcatggaatt taatgcagtc
      781 ctataacagt catgatgatg aggttggcgg taatatgtcc ctgacctatg atggctctta
      841 tggcacggtg aacggcagct ataactacag ccaaaattcc cagaggctga attatggtat
      901 cagaggggga attctggcac acagcgaagg ggtaacgtta agtcaggagt taggtgaaac
      961 tattgctctt gttaaagcac ctggggccgc cgggttagaa atagataata tgcgcggtgc
     1021 tgcgacggac tggcgcggct atacggtcaa gacacagcta aacccttatg atgaaaatcg
     1081 ggtagcaatc agcgataact atttctcgaa gtcgaatata gaacttgata ataccgtcgt
     1141 tacgatggtt cccacgcgtg gtgcagtggt taaagcggag tttgtgactc atgtgggtta
     1201 tcgcgttctc ttcagagtgt taaatgcaaa tggtaaaccg gtaccttttg gagccattgc
     1261 tgcgatacaa gatgcaagtt tggcagattc aggaattgtc ggtgaccgtg gcgaacttta
     1321 tctttctggt ctaccagaaa aaggacaggt tacgttatcc tggggagaaa acgcctcaac
     1381 aaaatgcatc ttcaattatt cactttcgac accagaaagt gagagcggat taattgaaca
     1441 gggtgtgaca tgtcattaaa aggattttta tgaacaagta tatcaaacag tggtgctttg
     1501 ctgtgtttat gctctcgtta agtagtgtag cacttgcagc tcctaaaggt atctgtaccc
     1561 ctgataatgg cgtatttcac agtacgcttg atttctcggg atatcttatt accgcgaacg
     1621 aaaataaggt tggaacgaca tttaacacca ctgtaactaa tggatcctca tatcctggac
     1681 gctgtcattg tgatactggt aacgtaggag aattccccta tatctattat acgtcaaaaa
     1741 taaaccaggc attaacttat gctggggttc actctaatat taattattat gatcttaatc
     1801 cgaaccttga tgttgggatt gctatagata ttcttggggt tgggtatgtg aatgcacctt
     1861 ttgaatatca tgctaacaac ccgtctggta atacaaagta caattgcaac cgcattgaac
     1921 ctttaagtat atctagtggg gctaaagcga tagtatattt ttatatcaag aagacatttg
     1981 caggaaaatt gattattcct gaaacaaaga tagtgacatt gtatggaaca attagccgtg
     2041 acaccccggt ggattactca cagccgatgg ctaatgttta tattcggggc gatattacag
     2101 ctccgcaaag ttgcgaaata aataatttac agccagttta ttttgatttt aaagaaatac
     2161 cagctgcaga tttttcatct gttgttggaa gtgcggtaat aacacataaa attactaaaa
     2221 cggtcactat tgagtgtgaa aacctgggga tactgaatac cgatgatatc agtacgtctt
     2281 tttatgctac cgaacccaat acggacaatt caatggtcgt aacttcaaac tctaacgtgg
     2341 ggataaaaat ttacgacaaa aataataagg aaatcaaagt gaacggtggt gagttgccaa
     2401 cagacatggg taaatcaaca gtgtatggtg aaaaattagg tagtgtaact ttttcagctg
     2461 ctcctgcgag ccttactgga gctcgcccag ccccggggca atttactgca acagcgacga
     2521 taactgttga gattgtgcgc taataggtct gacaacgatt gttcatcaca tcgttgtcat
     2581 ctcacccatt tctttatcac ttttaaatgc atcatgacaa aaagatgaca tgtgggattt
     2641 tcatcttcac atttaaaatc agtaagttat ttggtaattc ctttctgtca taaaaatgtc
     2701 atattcctta catataactg tcacctgttt gtcctatttt gcttctcgta gccaacaaac
     2761 aatgctttat gaatcctccc aggagacatt atgaaagtta tgcgtaccac cgtcgcaact
     2821 gttgtcgccg cgaccttatc gatgagcgct ttctctgtgt ttgcagaagc aagcctgaca
     2881 ggtgcaggtg caaccttccc tgcgccggtg tatgccaaat gggctgacac ttaccagaaa
     2941 gaaaccggta ataaagttaa ctaccagggt atcggttctt ccggtggcgt aaaacagatt
     3001 atcgctaata ccgttgattt tggtgcctct gacgcgccgc tgtctgacga aaaactggct
     3061 caggaaggtc tgttccagtt cccgaccgtg attggcggcg tggtgctggc ggttaacatt
     3121 ccagggctga agtctggcga actggtgctg gatggtaaaa ccctcggcga catctacctg
     3181 ggcaaaatca agaagtggga tgatgaagcc atcgccaaac tgaatccggg tctgaaactg
     3241 ccttcacaaa acattgctgt agtacgccgc gcagatggct ccgggacttc cttcgtcttc
     3301 accagctacc tggcgaaagt gaacgaagag tggaaaaaca acgttggtac tggctctacc
     3361 gtaaaatggc cgatcggtct gggcggtaaa ggtaacgacg gtatcgccgc gttcgttcag
     3421 cgtctgccgg gtgcaattgg ttatgttgaa tatgcttacg cgaagcagaa caacctggcg
     3481 tacaccaaac tgatctccgc tgatggtaaa ccggttagtc cgaccgaaga aaacttcgct
     3541 aatgcagcaa aaggtgcaga ctggagcaaa accttcgctc aggatctgac caaccagaaa
     3601 ggcgaagatg catggcctat tacctctacc acgttcattc tgatccacaa agatcagaag
     3661 aaaccagaac aaggcacaga agtgctaaaa ttcttcgact gggcgtacaa aaccggggct
     3721 aaacaggcga acgacctgga ttacgccagc ctgccggata gtgtagttga acaggttcgc
     3781 gctgcgtgga agaccaatat taaagacagt agcggtaagc cgctgtacta ataaaactcc
     3841 aggccgggta cggtgtttta cgccgcatcc ggcattacaa aatgactttg taaacgcgtt
     3901 taactgaaga gtaacttatg gctgcaacca agcctgcttt taacccaccg ggtaaaaagg
     3961 gcgacataat tttcagcgtg ctggtaaaac tggcggcgct gattgtgcta ttgatgttgg
     4021 gtggcattat tgtctctctg atcatctcct cctggccgag cattcagaaa tttggtctgg
     4081 ctttcctatg gaccaaagag tgggatgcac cgaacgatat ctacggggcg ctggtgccga
     4141 tctacggtac gttggtgact tcgtttatcg cgctgctgat cgccgtcccg gtgagtttcg
     4201 gtatcgccct gttcctgact gagcttgcgc ctggctggct gaaacgcccg ctgggtatcg
     4261 ccattgagct gctggcagcc attccaagta tcgtttacgg catgtggggc ctgtttatct
     4321 ttgcgccgct gttcgccgtt tactttcagg agccggtcgg caatatcatg tcgaatatcc
     4381 cgattgttgg cgcgctgttc tctggccccg catttggtat cggtatcctc gcggcaggcg
     4441 tgatcctcgc catcatgatt attccgtaca ttgcggcggt aatgcgtgat gtgttcgaac
     4501 aaaccccggt gatgatgaaa gagtcggcct acggtattgg ctgcaccacc tgggaagtta
     4561 tctggcgtat cgttcttccg ttcaccaaaa atggtgttat cggcggtatc atgctggggc
     4621 tgggccgcgc gctcggtgaa accatggcgg tgacctttat catcggtaac acctaccagc
     4681 tcgacagcgc ctcgctgtac atgccgggca atagtatcac ctctgcgttg gcgaacgaat
     4741 ttgcggaagc ggaatccggt ctgcacgttg ccgcactgat ggaactgggc ctgatcctgt
     4801 ttgtgattac cttcatcgtc ctcgccgcat cgaagtttat gattatgcgc ctggctaaga
     4861 atgagggggc acgctaatgg ctatggttga aatccaaacc actgcggcgc tggctgaatc
     4921 tcgccgcaaa atgcaggcgc gtcgccgcct caaaaaccgt attgcgctga cgctctcgat
     4981 ggcgacgatg gccttcggcc tgttctggct gatctggatt ttaatgtcca ccatcactcg
     5041 cggtatcgac ggtatgtcgc tggcgctgtt cactgaaatg acgccgccgc ccaatacgga
     5101 aggtggtggt ctggcgaacg ccctggcggg tagcgggctg ttaattttgt gggccacggt
     5161 attcggtacg ccgctgggca ttatggcggg gatttatctg gcggaatatg gtcgtaaatc
     5221 ctggctggca gaagtgattc gcttcattaa cgacattctg ctctccgcgc cgtcgattgt
     5281 ggttggtctg tttgtttaca ccatcgtggt ggcgcagatg gagcacttct ctggctgggc
     5341 gggcgtgatt gccctggcgc tgttgcaggt gccgattgtt atccgcacca ccgagaacat
     5401 gctgaaactg gtgccggaca gcctgcgtga agcggcttat gcgctgggta caccgaagtg
     5461 gaagatgatc tctgcgatta cgctgaaagc gtcggtgtcc gggatcatga ccggtatcct
     5521 gctggcgatt gcccgtattg ctggtgaaac cgcgccgctg ctgtttaccg cgctctccaa
     5581 ccagttctgg agcacggaca tgatgcagcc gatcgccaac ctgccggtga cgatctttaa
     5641 gtttgcgatg agcccgtttg cggaatggca acaactggcc tgggccgggg tattgattat
     5701 taccctgtgc gtactgctgc tgaacattct agcgcgcgtt gtttttgcga agaataaaca
     5761 cggttaacac tttgccggat gcggcgtgaa cgccttatcc ggcctacggt aagcctgatt
     5821 agcgaagtgc atcaggcacg atgaggaaaa gattgcaatg agtatggttg aaactgcccc
     5881 gagtaaaatt caggttcgta atttgaactt ctactacggc aaattccatg ccctgaaaaa
     5941 catcaacctg gatatcgcta aaaaccaggt tacggcgttt atcgggccgt ccggctgcgg
     6001 taaatcgacg ctgctgcgta ccttcaacaa aatgtttgaa ctgtacccgg agcagcgtgc
     6061 ggaaggtgaa attctgcttg atggcgacaa catcctgacc aactctcagg atatcgcact
     6121 gctgcgtgcg aaagtgggca tggtgttcca gaaaccgacg ccgtttccga tgtccatcta
     6181 cgacaacatc gcttttggcg ttcgtctgtt tgagaagctc tcccgtgccg acatggacga
     6241 gcgcgtgcag tgggcattga ccaaagccgc attgtggaac gaaaccaaag ataaattgca
     6301 ccagagcggt tactctctct ctggtggtca gcaacagcgt ctgtgtattg cgcgtggtat
     6361 cgccattcgc ccggaagtgc tgctgctcga cgaaccgtgt tcggcgctcg accctatctc
     6421 taccgggcgt attgaagagc tgatcaccga actgaagcag gattacaccg tggtgatcgt
     6481 cacccacaac atgcagcagg ctgcgcgttg ttccgaccac acggcgttta tgtacctggg
     6541 cgaattgatt gagttcagca acacggacga tctgttcacc aagccagcga agaaacaaac
     6601 agaagactac atcaccggtc gttacggttg attcaggagt gcgttatgga cagtctcaat
     6661 cttaataaac atatttccgg ccagttcaac gccgaactgg aaagtatccg cacgcaggtg
     6721 atgaccatgg gcggcatggt ggagcagcag ctttctgatg caatcaccgc gatgcataac
     6781 caggacagcg atctggcgaa gcgcgtgatc gaaggcgaca agaacgtcaa catgatggaa
     6841 gtggcgatcg atgaagcctg cgtgcgcatt atcgccaaac gtcagccgac ggcgagcgac
     6901 ctgcgactgg ttatggtgat cagtaaaacc attgccgagc tggagcgtat tggcgacgtg
     6961 gcggacaaaa tctgccgtac tgcgctggag aaattctccc agcagcatca gccgttgctg
     7021 gtaagtctgg agtcgctggg ccgtcatacc atccagatgc tgcacgacgt gctggacgcg
     7081 ttcgcgcgga tggacattga cgaagcggta cgtatttatc gtgaagataa aaaagtcgat
     7141 caggaatacg aaggtattgt tcgtcaactg atgacctaca tgatggaaga ttcgcgtacc
     7201 attccgagcg tacttactgc gctgttctgc gcgcgttcta tcgaacgtat tggcgaccgc
     7261 tgccagaata tttgtgagtt tatcttctac tacgtgaagg ggcaggattt ccgtcatgta
     7321 ggcggtgatg agctggataa actgctggcg ggaaaagata gcgacaaata attcaccaga
     7381 caaatcccaa taacttaatt attgggatt
//
LOCUS       DAJVUY010000184         7227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.185, whole genome shotgun sequence.
ACCESSION   DAJVUY010000184 DAJVUY010000000
VERSION     DAJVUY010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.185"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..421
                     /gene="speG"
                     /locus_tag="OQQ72_003671"
     CDS             <1..421
                     /gene="speG"
                     /locus_tag="OQQ72_003671"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HCS2013257.1"
                     /translation="TTSHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIIS
                     PEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGELMHE
                     FFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
     gene            complement(424..1134)
                     /locus_tag="OQQ72_003672"
     CDS             complement(424..1134)
                     /locus_tag="OQQ72_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HCS2013258.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSDEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            1242..1520
                     /locus_tag="OQQ72_003673"
     CDS             1242..1520
                     /locus_tag="OQQ72_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HCS2013259.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQST"
     gene            1747..4157
                     /locus_tag="OQQ72_003674"
                     /pseudo
     CDS             1747..4157
                     /locus_tag="OQQ72_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
     gene            4218..6641
                     /locus_tag="OQQ72_003675"
     CDS             4218..6641
                     /locus_tag="OQQ72_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS2013260.1"
                     /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR
                     AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG
                     RSIRRRMNHPDRLKYPMKRVGKCGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV
                     LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI
                     ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP
                     IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG
                     PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM
                     LSVLTGNVGINGGNSGVREGSWDLGGEWFPMLENPVKTQISVFTWTDAIDHGTEMTAT
                     RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS
                     AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL
                     GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMLDYEEMKTTGIFKKKCPEEHYVAFRA
                     FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK
                     TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG
                     EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH
                     SNLVQIEKV"
     gene            6652..>7227
                     /gene="dmsB"
                     /locus_tag="OQQ72_003676"
     CDS             6652..>7227
                     /gene="dmsB"
                     /locus_tag="OQQ72_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS2013261.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELGCKDFKDLGPEVSFRRIYEYAG
                     GDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVYPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICIESCPLRALEFGPIEELRQ
                     KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPT"
BASE COUNT         1946 a         1822 c         1757 g         1702 t
ORIGIN      
        1 gaccacttca catattcacg atcagagcga acgacgcttt gtggtggaat gtgacggcga
       61 aaaagccggt ctggtggagc tggtggaaat taaccatgta catcgccggg cagaatttca
      121 gataattatc tccccggagt atcaggggaa aggtctggca acccgtgccg ccaaattagc
      181 aatggactat ggcttcaccg ttctcaatct ctataagctg tatctgatcg tcgataaaga
      241 gaatgaaaaa gcgattcaca tttaccgcaa gcttggcttt acggttgaag gtgaattgat
      301 gcatgagttt tttattaatg gtcaatatcg taatgccatt cgcatgtgta tattccagca
      361 tcagtatctg gcagagcaca aaacaccggg tcagactctc ctgaagccga ccgcacaata
      421 gcattaataa taatcgatcg tatttttgat ggtgtaaacc cgttcgacgg cgggttttac
      481 tccttcatca acaatgatca gctgacagtc caccggattg gcgtgactgt catattcaca
      541 gctctgtttt acattaccaa ctcgttgatt attcagtaaa gtaaccgctg tgtaatctaa
      601 ttttttgatc gggtccgttg atggcgtggc gctgacagat aatgttttgt cgttactttt
      661 cgtggtttta cccagtggat aaccctgatc atcatagcga tattccatct gcatttgttt
      721 gctgctggct ttaatcacga agccattatc atcggtttcc caactcaccc cggcagaagg
      781 taattctgct agctggcatt ttccctgtaa acgtactctc ttctccagcg tctcggcatc
      841 acggtaataa ttggcgtcca gtaccagagc gaccacggta ttattttcca gatccagtaa
      901 ttcgagtgaa tcaaaacagc cttcttccga caaagtccca gaaacacgtt tcgtcacttc
      961 accttgctca tccattaatg tctgagtgaa atcttttacc ggaccacgca gcggatcaaa
     1021 atcgaattca tcagagaaac tggccatctc aggggtaaat gaaagtgtta cctctgtgcg
     1081 gtcacatcct gtgaggaata tcgcgagtaa gcatggtagt aatttgtatt tcacaacagt
     1141 caccagagag tagagatgat tctcaatcat agtagcaaat acagtacttt acacgttaaa
     1201 tgctatgctt aaagaagtta tcttcgcgta aggagcttat gatgaaactc tcaacctgct
     1261 gtgccgcgct tctgctcgcc ctcgcctcac ccgcggtact cgccgcgccg ggatcctgtg
     1321 agcgcataca gagcgatata tcacagcgca ttatcaataa tggcgtaccc gaaagcagct
     1381 tcacattaag tattgtaccc aatgaccagg ttgatcagcc tgattcccag gtcgtcgggc
     1441 attgtgctaa tgatacgcat aaaattctct acacccgcac caccagcgct aacgtctctg
     1501 ctcccgcgca gtctacctag gatggcgcgc ctgccgaacc gcagtaatac attatcgact
     1561 gaacgccgga tatgacacat ccggcgattt gaacatacaa cataatccca ccttattact
     1621 catacccttc tattgatgtg gattaataat tcttaaccca aaatgggtat acccccctct
     1681 attgttagcg cgctaaatat tcaatacata aacatttata taacgataaa gaacagggag
     1741 tgagttatgt ccaaaaatga ccgaatggtg ggcatcagcc gcagaacact cgttaaatca
     1801 accgcgatag gttctctggc gctggctgca ggcggttttt ctttaccgtt caccctgcgc
     1861 agtgcagcgg caacggtaca acaggccagc gaaaaagtga tctggggtgc ctgttccgtc
     1921 aactgtggta gccgctgtgc acttcgtcta catgttaaag ataatgaagt gacctgggtg
     1981 gaaactgaca ataccggcag cgatgagtac ggcaaccatc aggtacgcgc ctgtttgcgc
     2041 ggtcgctcca tccgccggcg tattaatcat cccgatcgct tgaattaccc aatgaaacgc
     2101 gtgggtaaac gcggtgaagg caaattcgaa cggattagct gggatgaagc cctggatact
     2161 atcgccagta gcctgaaaaa aaccgtcgaa caatatggca atgaggctgt atatattcag
     2221 tactcttcgg ggattgttgg cggcaatatg acccgctctt cgccatcagc ctcggcggtc
     2281 aaacgcctga tgaactgcta cggcggttca ctcaatcagt atggctccta cagcaccgca
     2341 caaatttcct gtgccatgcc ctacacctac ggcagtaatg atggcaacag caccacggat
     2401 attgaaaaca gcaagctggt cgtgatgttt ggtaacaacc cggcagaaac ccgcatgagc
     2461 ggcggtggca tcacttatct tcttgaaaaa gcgcgcgaga aatcgaacgc caaaatgatt
     2521 gttatcgatc cgcgatatac cgatacggct gctggtcgtg aagatgaatg gcttcctatt
     2581 cgcccgggca ccgatgccgc gctggttgcg ggtattgcct gggtattgat taacgaaaat
     2641 ctcgttgatc aaccttttct cgataaatac tgcgtcggct atgacgaaaa aaccttaccc
     2701 gcagatgcac caaaaaatgg tcactataaa gcctatattc ttggtgaagg tgatgataat
     2761 acagcgaaaa cgccgcagtg ggcttcgcaa attaccggta tcccggtgga ccgtatcatc
     2821 aaactggcgc gtgaaattgg cacagcaaaa cccgcttata tctgccaggg ctgggggccg
     2881 caacgccagg caaacggcga actgactgca cgcgctattg ctatgttgcc tattttgacg
     2941 ggcaatgtcg gcatcagcgg cggaaatagt ggcgcgcgtg aatcgaccta taccattacc
     3001 atagaacgcc tgccggtgct ggataatccg gtcaaaacgt caatctcctg cttcagctgg
     3061 acagatgcta tcgatcatgg tccgcaaatg acggcaatcc gcgacggcgt ccgcggcaaa
     3121 gataaactgg atgtgcccat taagttcatc tggaactacg cgggaaatac cctcgttaat
     3181 cagcattctg acatcaacaa aacgcatgaa attctgcagg acgaatcgaa atgcgaaatg
     3241 attgtggtca tcgaaaactt tatgacctca tcggcaaact gccagacctg atgaccgttg
     3301 agcaggaaga tattattcct aacgactacg ccggtaacat gggatatctc attttcctcc
     3361 agcctgtcac cagcgaaaaa ttcgaacgca aaccgattta ctggatcctg agtgaagtcg
     3421 cgaaacgtct tggacctgac gtctatcaaa agttcacaga aggtcgcacg caggaacaat
     3481 ggttacaaca tctgtacgcc aaaatgcttg ccaaagatcc ggcgttaccg tcttacgacg
     3541 aactgaaaaa aatgggtatc tataagcgta aagatcccaa tggccatttt gtcgcctaca
     3601 aagcatttcg tgacgacccc gaggcaaatc cacttaaaac gccttccggt aagattgaaa
     3661 tttattccag caggctggcg gaaattgccc gtacctggga actggaaaaa gatgaagtga
     3721 taagcccatt gccagtttat gcctcaacct ttgaaggctg gaactcccct gaacgtagaa
     3781 ccttcccact gcaactgttt ggtttccatt acaaatcccg tactcactcg acctacggca
     3841 atattgatct cctgaaggct gcctgccgtc aggaggtgtg gatcaaccct atagatgcgc
     3901 agaaacgtgg gattgccaac ggcgatatgg tgcgggtgtt taaccatcgt ggcgaagttc
     3961 ggctaccagc caaagtaaca ccacgtattc tccctggagt tagcgctatg ggccagggag
     4021 cctggcacga ggccaatatg tctggcgata aaatcgacca tggcggctgt gtgaatacgc
     4081 taaccactct gcgcccttca ccactggcga agggaaaccc gcagcacact aatctggtcg
     4141 agatcgaaaa aatataaccc acgacaacca taaattctgg catgacattt tgtttgaaaa
     4201 gcaataagtg agtaatgatg aaaatccata ccacagaggc gctcatgaag gctgaaatca
     4261 gccgtagaag tctgatgaaa acctccgcac ttggcagtct tgcgctggca agcagtgctt
     4321 tcactctgcc attttcccaa atggtccggg cggcagaggc tccggtagaa gagaaagcgg
     4381 tctggagttc ctgcaccgtt aactgcggga gccgctgtct gttacgtttg catgtgaaag
     4441 atgacaccgt gtactgggtg gagtctgata cgacaggtga cgacgtctac ggtaatcatc
     4501 aggttcgagc gtgtttacgc gggcgctcta tccgccgacg gatgaatcat cctgataggt
     4561 tgaaatatcc catgaagcgc gtcggcaagt gcggtgaagg taaatttgaa cggataagtt
     4621 gggacgaagc cctggatacc atcagtgata atcttcggcg gatcctgaaa gattacggca
     4681 atgaggctgt acatgtcctg tacggaacag gcgtagatgg cggaaacatc accaactcaa
     4741 acgtcccgta ccgtctgatg aactcttgcg gtggttttct cagtcgctat ggcagctaca
     4801 gtaccgcaca gatcagtgcc gcaatgagtt atatgttcgg tgccaatgat ggcaacagcc
     4861 cggatgatat cgccaatacg aaactggtcg ttatgttcgg aaataacccg gcagaaacgc
     4921 ggatgagcgg cggtggtgtc acttactacg tcgagcaagc ccgcgaacgt tcaaacgcac
     4981 gcatgatcgt catcgatcca cgttataacg acactgctgc cgggcgtgaa gatgaatggc
     5041 tgcctattcg ccctggcacc gatggcgcac tggcctgtgc gattgcctgg gtactgatta
     5101 ctgaaaacat ggtcgatcag ccatttctcg acaaatattg tgttggttac gatgaaaaaa
     5161 cgctgcccgc caacgcacca cgtaacgcgc attataaagc ctatattctg ggcgaagggc
     5221 ctgacggcat agctaaaacg ccggaatggg cagcaaaaat caccagcatc ccggcagaaa
     5281 aaattatcca gttggcgcga gagatcggtt cagcaaaacc tgcttatatt tgtcagggtt
     5341 gggggccaca acgacattcc aacggcgagc aaacgtcccg cgctattgcc atgctttccg
     5401 ttctcaccgg taacgttggc ataaacggcg gcaactcagg tgtacgcgaa ggtagctggg
     5461 atctgggggg agaatggttc ccgatgcttg agaatcctgt taaaacgcag atttccgtct
     5521 ttacatggac agatgccatc gaccatggta cggaaatgac cgcgacccgt gatggtgttc
     5581 gtggaaaaga aaaactggat gtccccatca agtttttatg gtgctacgcc agtaacacat
     5641 tgatcaatca acatggcgac atcaatcaca cccatgaggt gcttcaggat gacagcaagt
     5701 gcgagatgat tgttggcatt gaccacttca tgacggcctc ggctaagtat tgcgatatcc
     5761 tgttgcccga cctgatgcca acagagcaag aagaccttat ctctcatgaa tctgcaggga
     5821 atatgggcta tgtgatcctc gcccaacccg caacctcagc aaaatttgaa cgcaaaccca
     5881 tctactggat gctgagtgaa gtcgccaaac gcttaggacc agacgtttat caaaccttta
     5941 ctgaaggtcg cagtcagcat gaatggatca aatatctcca tgcgaaaacg aaggaacgta
     6001 accctgagat gctcgactac gaggagatga aaacgaccgg gatctttaag aaaaaatgcc
     6061 cggaagaaca ctacgtcgct ttccgcgcat tccgtgaaga tccacaggca aacccgttga
     6121 aaacaccttc ggggaaaatc gaaatttatt ctgaacgact ggcgaagatt gcagatacct
     6181 gggaattgaa aaaagatgaa attattcatc cccttcctgc gtatacccca ggttttgatg
     6241 gctgggacga tcccctgcgg aaaacctatc cactgcagtt aacgggcttc cactacaaag
     6301 cgcgtaccca ctccagctac ggcaatattg atgtgttaca gcaggcctgc ccacaagagg
     6361 tgtggatcaa ccccattgat gctcaggcac gcggtatccg tcatggcgat accgtgcggg
     6421 tatttaacaa taatggagaa atgctgattg ccgcaaaagt gactccgcgt attctgcctg
     6481 gcgttaccgc catcgggcaa ggtgcgtggc ttaaagcgga tatgtttggt gaccgggtcg
     6541 atcacggcgg cagtatcaat attctgacct ctcaccgccc ttcaccgctg gcaaagggaa
     6601 acccgtcgca cagcaatctt gtccagatcg aaaaggttta aggagtagcc catgaccaca
     6661 caatatggat tttttatcga ttccagccgc tgtactggct gtaaaacctg cgaactgggg
     6721 tgcaaagatt ttaaagatct tggcccggaa gtcagtttcc gccgtattta tgaatatgct
     6781 ggcggcgact ggcaggaaga taatggcatc tggcaccaga acgtgttcgc ttattatctc
     6841 tccatctcct gtaaccattg cgatgacccc gcatgtacaa aagtctaccc cagcggcgca
     6901 atgcataagc gtgaagatgg ctttgtggtg gttgatgaag atgtttgtat cggctgccgc
     6961 tactgccaca tggcttgtcc gtacggcgca ccacagtaca atgctgaaaa agggcacatg
     7021 acgaagtgcg atggttgtta ttcgcgcgtc gccgagggga aacaacccat atgcatcgaa
     7081 tcctgcccgc tgcgtgcact tgagttcggt ccaattgaag agctgcgcca gaagcacggc
     7141 actctggctg ccgtcgcgcc actgccgcgc gcgcatttca caaaacccaa tatcgttatc
     7201 aaacctaacg ccaacagccg cccgacc
//
LOCUS       DAJVUY010000185         7206 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.186, whole genome shotgun sequence.
ACCESSION   DAJVUY010000185 DAJVUY010000000
VERSION     DAJVUY010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7206
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.186"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(238..792)
                     /locus_tag="OQQ72_003677"
                     /pseudo
     CDS             complement(238..792)
                     /locus_tag="OQQ72_003677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS3H family transposase"
     gene            935..1057
                     /locus_tag="OQQ72_003678"
                     /pseudo
     CDS             935..1057
                     /locus_tag="OQQ72_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1319..1885)
                     /gene="ipgB2"
                     /locus_tag="OQQ72_003679"
     CDS             complement(1319..1885)
                     /gene="ipgB2"
                     /locus_tag="OQQ72_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB2"
                     /protein_id="HCS2013262.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(2167..2481)
                     /locus_tag="OQQ72_003680"
     CDS             complement(2167..2481)
                     /locus_tag="OQQ72_003680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013263.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSAQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            complement(2559..2669)
                     /locus_tag="OQQ72_003681"
                     /pseudo
     CDS             complement(2559..2669)
                     /locus_tag="OQQ72_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2993..3670)
                     /gene="ospD1"
                     /locus_tag="OQQ72_003682"
     CDS             complement(2993..3670)
                     /gene="ospD1"
                     /locus_tag="OQQ72_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector/anti-activator
                     OspD1"
                     /protein_id="HCS2013264.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            complement(4041..4178)
                     /locus_tag="OQQ72_003683"
                     /pseudo
     CDS             complement(4041..4178)
                     /locus_tag="OQQ72_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(4260..4558)
                     /locus_tag="OQQ72_003684"
                     /pseudo
     CDS             complement(4260..4558)
                     /locus_tag="OQQ72_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(5147..5306)
                     /locus_tag="OQQ72_003685"
                     /pseudo
     CDS             complement(5147..5306)
                     /locus_tag="OQQ72_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(5310..6464)
                     /locus_tag="OQQ72_003686"
                     /pseudo
     CDS             complement(5310..6464)
                     /locus_tag="OQQ72_003686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6484..6831)
                     /gene="tnpB"
                     /locus_tag="OQQ72_003687"
     CDS             complement(6484..6831)
                     /gene="tnpB"
                     /locus_tag="OQQ72_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2013265.1"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     gene            complement(6831..>7206)
                     /locus_tag="OQQ72_003688"
     CDS             complement(6831..>7206)
                     /locus_tag="OQQ72_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS2013266.1"
                     /translation="RRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQ
                     YRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLR
                     LKGKLTPALLQILIREIKGSSH"
BASE COUNT         1860 a         1677 c         1557 g         2112 t
ORIGIN      
        1 taaaaacctt ctcatgttta gagtttttta ttatgtttat cataatgata tgacgatctg
       61 agtttttaaa atcaagaaga aaagataagt tttttaaatg cacagtgcct gtggataact
      121 ttgcgtaaat ccggaggaca gatcactctg aagcaagaca acagcatctg aaaacaatat
      181 gctcacgttt caaccacagg gcgtaagtga tcctacccac gtaatatgga cacaggccta
      241 agcgaggttc tggttttcaa attgttccgg actgaggccg ccacaccaac tgtgccgtcg
      301 ccagcgattg taatcacatt cgatataatt aaacactgtt gcccgcatta tttcccggct
      361 gataaagtgt tctccgtgga gacattccac tttcagcgaa tgaaagaagc tttccacgca
      421 ggcattatcg tagcagcagc cctttgcgct catactgcca cgcagattat gccacttcag
      481 cagcgcctga taatctgctg aacagtactg acttcctcgg tccgagtgaa cgataacgtt
      541 ccggggtctc ttacgccgcc acagcgccat ctgcagggca tcgcaggcca gttgcgccgt
      601 caggcgtggt gacatggacc agccaataac ggcacgtgac cacaggtcaa tgaccacagc
      661 cagatacagc cagccttcat ctgtacgtaa gtacgtgatg tctcccgccc acttctggtt
      721 cggaccactg gcgtaaaaat cctgctccag cagattttct gacacaggca ggccatgtgc
      781 gcggtaactg accgtattgc tgggtaagat caatttgctc actggtattt actacgtgca
      841 tcgaatgagt gatcaagagc cgtatgacgc gagagtgtca cgtacggttc cgtgagcagc
      901 cggagagtga aactctctcc ggctgactcg actcgcaggt tccgacagcg gtgacgaaca
      961 tgcagcggtg ttgttctcgc tgatcggcac atgccgtctg aacaatgtgg agccagaaaa
     1021 atggctgcgt tacgttattg aacatatcca ggactgaccg gcaaaccggg tacgcgatct
     1081 gttgccttgg aaagttgatc tgacttctca gtaaatatca atatgattct gacgagccgc
     1141 ttacctttga gcagagaaag gggagaggga tcccacatcc atgagctagg aaaatacaaa
     1201 aactggctat acaacaattc aatatattag gacttacttg cgaggagaaa tatagcaccg
     1261 ctcaggcaat tcctgggtat ttacttttct tagtttcttt actcgggatg ttctgtcatc
     1321 agaaaggcga ttctaaattt gtaatataat cactcatatt cccacgtaat ttctttagat
     1381 caatatattg cacatttttc tcaaaaaact gatcggaaat aagatttgca acattgcttg
     1441 ttgtatcatt tttaacgctt ctattcatcc cttcacaaag ttcgtccatt ttctttttga
     1501 aataactgct tcctgataca agatgattta tggaactttg tgcagcattg atgtctagag
     1561 aaatgtgata atctttctca acctgtttaa atatctgttt acggagatta tcgccgattt
     1621 ttcggctgtg ttctgcacaa aacttatcaa tacattggtt taccacccgg gatacgtaga
     1681 cttttttttc atcatttttc caatctgtaa tattttcacc gatttgttct gaaacagagc
     1741 tcaaaatact agtatttatt ttggttgatg atatttttac tatccttttc cccattgtac
     1801 agcggataat ctcatcaacc tttcctgaaa aatatctttt gtgagataaa ctgattccaa
     1861 aattattaaa agatgttcca agcattataa tcactttgtc atgtaaaata gtaacattgt
     1921 cattatttta gctgattcaa acaattctgt aaatgctttg agttctttac tcccttggct
     1981 caatgatgga ccgtctggaa tcccagagac taaactctct gagaaagaga gtatgaaaaa
     2041 acttggggca gtccctaaat gaagggacca acagcggtaa aataaccggc atcattcata
     2101 atgatgccct gttagttgta gttatgaaga tttacgtcat taaaattgct gttcgtagtg
     2161 tcagtcctat ggtctggcat cagctgagga tcgtagccga tacatcactg gcttcacgac
     2221 attcgtgttg aggctattca tgaaaactcc acgctgaaaa cgcctttttg tataaacggt
     2281 cacggtatgc ccggagccac tgttgctgat gaattcgata aaaccttggc gtttcttgaa
     2341 gctatcgtta atgcggataa tgaaacaacg attggtgaga ttcgctcttt tgccgacacc
     2401 ctgggcgctg tccggttcaa tcgcaacaaa atcaaccggc agctgagcaa acccaacctt
     2461 gcctctctgg cgctggagca tgaagtgatt tagctgggac gtagccactg acagcttcta
     2521 taaaagtatg atcctaccca cgtaatatga acacaggctt aagtgaggtt ctggttttca
     2581 aattgttcag gactgagacc tccacaccaa ctgtgccgtc gtcagcgatt gtaatcgcac
     2641 ttgatataat taaacactgt atatttcatt tgtggagtct ccagtctgag ggggctttat
     2701 gcattccgta ttgggcacta tgatgccaga aatctgcaag gctccacacc ttcctgtatt
     2761 tcccttcctc tatcacagtg cactttactt aatagggtgg gatgtgttca ttacatttat
     2821 tgtgtttttt atgattgttt ttgcgtccag tgtcgttcgt catgggaaac tggttctatg
     2881 ggtagtatcg ctcagtctag ttaactgttt gtttcttttt agaaattaag cagatcacac
     2941 aattcgggga gagctccttc taagtgcaat tctttgcagc tatttagcac acttaaaaca
     3001 actcttgtat tttgtcagaa ataatattaa acatgtcttg ttcattattg ttaagtctgt
     3061 ctgctatttc tgtaagtttt atcccactat gatggcatat atttatatat gccatcatag
     3121 cctcgatatt ccctttccct gcggccagaa ataatcctgg taacccctca ttatctctta
     3181 catccaatag tttaatcgtt tcttttggtg ataaatcaaa agttttaata aaatctccat
     3241 aagcttgaat cgcagcggaa tgaccttctt gaagagctat gaacaaagca gattccccag
     3301 cattatttcg tgctgcaaga acttctagtt tttcctcttt gggtatttcg gctgccaaca
     3361 gcgattcacc gtatttacgc gctgcatcag catttccatg ccaaatcaat gaaaacaaat
     3421 tatggcggtt atactcctta ttattctttg tcggaatgga tatgctctgt attttggcca
     3481 attttctgaa agaaacacca ctatatcccc cccctgattt ttcttcattg atggcgtggg
     3541 atatagcggt atttgtcacg ttaatgatat tacgtttcat tcctttattt tcattagcag
     3601 tattgctgcc tattattagg tgcatatttt tgttgtttgc tggatgtaat ccatagttat
     3661 ttattgacat ttttgttcat cctttttgct aaaaaaaaca ataacctatt tttgtaatgt
     3721 aatagatatt agtctattgc taatctaaaa aaaccattgc cacattgaat ggctatattc
     3781 accaataaat tctttcgatt tcgtatattg acatatcgta gatatatctt atccctaaga
     3841 ttcaataatc gagtccgttt accattctgt gcaagcgcct tcactcagaa gtgaccgtca
     3901 aggcgatcac caaacttgat aataaagcag ctcattgcca tacgccagtc cttaaggggc
     3961 gttgtccatt tctgtgatgc tgcctagatt taactgcctg ctccggctta tctacatcta
     4021 aatatgtgag cctaataccg ctacactttg gccagactat gtttttctcc gggaagtggg
     4081 ctaaccgtct ccataaagtg acgaactttt ttcaacagtg gccatattga acggcactga
     4141 tgattacggg ttattgtctc atgaagagcc ggccacatca ctgacagcag tgacttcagg
     4201 ccttcagcac cagacagcct gaaccagtta atccatcgcc cgacagattt agtaatctag
     4261 ggctggtttt tcttcagctg ttgcggttcg aaagtgccat tacgatcacg cagagtacgg
     4321 atttccagag gttcatctcc agtagtgata atcttcgtta agcaaccatt gcgggaattg
     4381 ctgccagatc taagctgatt tttctcgcac ccaagatgat gagtcatatt agcattgagt
     4441 acggtttcat tttcagcatc caatcaaact gactgagatc ttcaggattt ttgagacttt
     4501 tggctagttc attagctaaa gcccgcaact tattagatgt caactgtttt tcattcataa
     4561 attcaccttc atttgatatc aaattaaata gttcaacatc agagaattat acaaacttat
     4621 gtacaggctc ctatgatctt cgaatcctga agattatagt gaaaataagt tttcacgttg
     4681 aaatcccaca tagttagtat atgataaata atcatggatg acctgattaa cctcttgggg
     4741 tagtgctttt atagaagaat aaatattcta ctaatttaat acatcaccta aaatagtatt
     4801 gttttttatg gttggttgaa ggtcgtggtg atgatgttag tccttttgag aatattccag
     4861 tgccagatct tacttataat aaaggggctt ggcagtttgg ataaactatt gttcttattc
     4921 cactaataca aactttttgt aaagtatatt aaatatactt catttcatac tgaaatcccc
     4981 ggaagtattc aatcaaacaa ttacaccata aaaggaagag ggggccctaa ttaagttgtc
     5041 aagcatgttt atgatacctg cagggtataa attttctggc tgcaagcaga cacatataaa
     5101 acgtctttat tgatcctacc cacataatat ggacacagtc gtaagtgagg ctctggtttt
     5161 caaattgttc cggactgaga ccaccacacc aacggtgccg tcgccagcga ttgtaatcgc
     5221 actcgatata actaaacact gttgcccgca ctatttcccg atggataata gtgttctccg
     5281 tggagacatt ccattttcag cgaatgaatt ttcatctgtt gctgtatcca gtcatacagt
     5341 gactgcatca gtggcgcggc tctggctttt cttgccgcca gacgctgttc tgctgaacat
     5401 ccccggactt ctgcctcgat ggcatacagt tcaccgatac gcagcagggc ttccgttatt
     5461 ctgccggatt cgtacaacgc ccggtaacca ccgtaagcat cggcctgaag cactccgctg
     5521 taaccggcca gatgattctg tggatggata cctttccggt ccggtgagta cgcgaaccag
     5581 accgccggag gcatttccga accggcgtta cggtcatcac ggacatagac ccacagccgg
     5641 gcagttcttg ttttaccact gcccggctcc tggaccggaa cggggatatc atccgcatga
     5701 actttaccgg gcatcagcac atactggcgc aggacgtcat acagcggctc cagcagttca
     5761 gcaacggcac cggtccagcg acccagtgtg gcacggctca gctccacgcc ctgacgacgt
     5821 tatatttctg actggcggta taacggcaga tagcctgcat attttccagc gacaacatgg
     5881 gccagaagcc ccgctccggc ataactgcgt gcaatgggtt ttgaaggcac cggtgcctgc
     5941 acgatatggt cacaccggca acaggccagt ttcggacgtt gtgtttcgat aaccttaaag
     6001 gcgctgctga taagctccag ctgctctgac acatcacatc ccagagaact gagttcgcca
     6061 ccacaggccg ggcagcattc ctcttccgga cggatgaccc gggtttcacg gggaagtgag
     6121 gcaggtaacg gtttacgggc tgaagactgg cgcaggggag atggcagtac cgggtcatat
     6181 tgctcaccca gcgtttccgc catttcttcc tgaagtgcgc tgattcgctc ctgtgcttcc
     6241 agtatctgcc gttcggtttt tgcgcgaagt ttttctgagc tttaaccgaa ctgcatgcgc
     6301 tgcagtttcg caaccagcgc cttcagccgg ttgatttcgg aagcataagc cgccacccgc
     6361 tgtgagagca ggcggttgta tttcgccatc tggcggatgg tgtcctgttg cgtctgcaac
     6421 agtgcccgca ggcgggcatt ctcatgagca agtgaggtgt ccatatcctc actttacaac
     6481 gggttatatg cggatgccag cgcgttccgt tcgtttcggg tgtttccagt cgatgccctc
     6541 aagaagcatg gataactggg ccggagtaag gtgcaccttg ccgtcacggg tgaccggcca
     6601 gacgaagcgg ccccgctcca ggcgtctggt aaagaggcac agtccgtcac tgtcagccca
     6661 caacactttt atctggtcac cccggcgtcc gcggaagatg aacagatgcc cggagaacgg
     6721 gtcatccttc aggacgttct gaacttttga ggccaggccg ttaaagccat ttcgcatatc
     6781 ggtgatacct gcaaccagcc agatacgcga acctgcaggg aaagatatca tcagtggctg
     6841 ctccctttta tttcgcggat aagtatctgt aataacgccg gcgtcagttt acctttaagc
     6901 ctgagagttc cggccggcag aaccagctca cagcacagac tgtcggacgg tgtatttatc
     6961 tgctctggtt cctgtgccgg agccgggatt ttattatccg gctccggcgt taacgtcacg
     7021 ggaagcagtg caggcatatt ttttccggaa ggcagcaggc cacctttccg gtattgatgg
     7081 cgccagttga agagcaggtt atcgttgatt ccgttttcac gggcgatctg cgccacacag
     7141 gctccgggct gcagtgactg ctccactaag gcgattttaa attcataagg aaaattaggc
     7201 cgccgg
//
LOCUS       DAJVUY010000186         7194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.187, whole genome shotgun sequence.
ACCESSION   DAJVUY010000186 DAJVUY010000000
VERSION     DAJVUY010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.187"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(86..844)
                     /locus_tag="OQQ72_003689"
     CDS             complement(86..844)
                     /locus_tag="OQQ72_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HCS2013267.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVTYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1131..2060
                     /gene="pfkB"
                     /locus_tag="OQQ72_003690"
     CDS             1131..2060
                     /gene="pfkB"
                     /locus_tag="OQQ72_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HCS2013268.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2161..2451
                     /gene="ghoS"
                     /locus_tag="OQQ72_003691"
     CDS             2161..2451
                     /gene="ghoS"
                     /locus_tag="OQQ72_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS2013269.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2557..3417
                     /locus_tag="OQQ72_003692"
     CDS             2557..3417
                     /locus_tag="OQQ72_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HCS2013270.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3458..3994)
                     /locus_tag="OQQ72_003693"
     CDS             complement(3458..3994)
                     /locus_tag="OQQ72_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YniB family protein"
                     /protein_id="HCS2013271.1"
                     /translation="MTYQQAGHIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4141..4809
                     /gene="hxpB"
                     /locus_tag="OQQ72_003694"
     CDS             4141..4809
                     /gene="hxpB"
                     /locus_tag="OQQ72_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HCS2013272.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            4972..5562
                     /locus_tag="OQQ72_003695"
     CDS             4972..5562
                     /locus_tag="OQQ72_003695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS2013273.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5695..7086
                     /gene="tcyP"
                     /locus_tag="OQQ72_003696"
     CDS             5695..7086
                     /gene="tcyP"
                     /locus_tag="OQQ72_003696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine/sulfocysteine:cation symporter"
                     /protein_id="HCS2013274.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1793 a         1758 c         1788 g         1855 t
ORIGIN      
        1 ttgctacgtt gggcagcaat gatttggggc tgagcagtga caaacgaaga cagccagacc
       61 gcataacacg gtccggcaga taattttaca tgctgtagcc cagcgataag gttgtccgac
      121 ggtcggtatg ttccggtgca gactctggag gttcagagtt ccatgtaacg ttgtaagtca
      181 ccttcagtcc aaaatgttca ttaatagcaa catttaatgc gctttcggag ttcagcgttg
      241 tgtcttccgc gccaaagacc gaaacaccct gcgtaaattt agcgttgtca gtcaactgcc
      301 atgcataagc cccggaggca tagcccagcg gctgagtttc actggcattg tcggtatatt
      361 tgtcgtaacg cacacctgga ccgaattcaa agcggaaact gtgtaccggg ccattcaaaa
      421 actgacgacc ataacccgcg gtcaacacat cgcgctctcg atagccgtta taacggtctg
      481 tcagccagct tgcctgacca aataaatagt cataatcagt taaattaaag cggctacgcc
      541 cgcccgccgc atatttttct gaagaacgct catcattaga agaagtatta ctggcgttcc
      601 cccacagcga ccaggcagtg gtttgtccat accaggtcat ggtggtgtca gccgtaagtg
      661 aggagctttt cgtattgcct gattgtgcaa gatatcctgc gttcagatta ccttcgaaag
      721 gttttttagc gctggcagga tcgtccatga cagtaaaaac ggaatcatcg gcagctgcat
      781 tcagtgacgc aaacatgccc cccgccaaca taacgatggc aggaactgtc ttcaaaagct
      841 tcatttatca agagtccgta caacaaaaaa agagaccatc gcggtcccgg aaactttctt
      901 aaggatcaaa gattagcgtc cctggaaagg taacgaatta taaaaaggcg cgaataactt
      961 agcaatgtat tcttatttca ttttttgaat aagcatgtgg cgaaaacaga tttttattta
     1021 tatatattta tctgcaaaat tttaaataaa gctccaataa atcatattgt taatttcttc
     1081 actttccgct gattcggtgc cagactgaaa tcagcctata ggaggaaatg atggtacgta
     1141 tctatacgtt gacacttgcg ccctctctcg atagcgcaac aattaccccg caaatttatc
     1201 ccgaaggaaa actgcgctgt accgcaccgg tgttcgaacc cgggggcggc ggcatcaacg
     1261 tcgcccgcgc cattgcccat cttggaggca gtgccacagc gatcttcccg gcgggtggcg
     1321 cgaccggcga acacctggtt tcactgttgg cggatgaaaa tgtccccgtc gctactgtag
     1381 aagccaaaga ctggacccgg cagaatttac atgtacatgt ggaagcaagc ggtgagcagt
     1441 atcgttttgt tatgccaggc gcggcattaa atgaagatga gtttcgccag cttgaagagc
     1501 aagttctgga aattgaatcc ggggccatcc tagtcataag cggaagcctg ccgccaggtg
     1561 tgaagctgga aaaattaacc caactgattt ccgcttcgca aaaacaaggg atccgctgca
     1621 tcgtcgacag ttctggcgaa gcgttaagtg cagcactggc aattggtaac atcgagttgg
     1681 ttaagcctaa ccaaaaagaa ctcagtgcgc tggtgaatcg cgaactcacc cagccggacg
     1741 atgtccgcaa agccgcgcag gaaatcgtta atagcggcaa ggccaaacgg gttgtcgttt
     1801 cccttggtcc acaaggagcg ctgggtgttg atagtgaaaa ctgcattcag gtggtgccac
     1861 caccggtgaa aagccagagt accgttggcg ctggtgacag catggtcggc gcgatgacac
     1921 tgaaactggc agaaaatgcc tctcttgaag agatggtccg ttttggcgta gctgcgggga
     1981 gtgcagccac actcaatcag ggaacacgtc tgtgctccca tgacgatacg caaaaaattt
     2041 acgcttacct ttcccgctaa caaaaacatt cccccagcat tgggggaatc accaccaacc
     2101 tgtcggcaac gcgtttctcc gactatgctc aaaagtcatg tgataacaaa ggggtgaact
     2161 atggccagtg gcgatcttgt ccgttatgtc ataaccgtca tgttgcatga ggatacattg
     2221 actgaaatta acgagttgaa taattacctg actcgcgacg gttttttgct caccatgacg
     2281 gatgatgagg gaaatatcca tgagctgggg actaacactt ttggacttat cagtacccaa
     2341 agtgaagaag aaattagaga actggtttcg gggcttaccc aaagtgcaac cggcaaagat
     2401 cctgaaatca ccatcacgac ctgggaggaa tggaatagca acagaaaata aatggttttt
     2461 gggcaataat cagtctgtgg tgtgcgttag ctcgtgtttt tacaccgcat tcttgcgcta
     2521 accttatgat ctggcagaca acatgggaga gacatcatgt ggcaggcaat cagtcgtctt
     2581 ttgagcgagc agttaggtga aggcgaaatc gaactgcgta atgaactgcc tggcggagaa
     2641 gtccatgccg catggcattt gcgctatgca ggacatgact ttttcgtcaa atgtgatgaa
     2701 agggaactgc ttcccggttt taccgccgaa gccgaccaac tggagttact gtcgcgtagt
     2761 aaaaccgtca ccgtgcctaa ggtttgggca gtaggcgctg accgtgacta cagttttctg
     2821 gtgatggatt atctcccacc tcgtccgctg gatgcgcata gcgcatttat tcttggtcag
     2881 caaattgcgc gtttacatca atggagtgac caaccacaat ttggcctcga ttttgataac
     2941 tcgctctcca caactccaca gcccaacacc tggcaacgtc gctggtcaac gttttttgct
     3001 gaacaacgga ttggctggca gttggaactg gcagcagaga aagggatcgc tttcggcaat
     3061 atcgacgcca tcgtcgagca tattcagcag cgtctggcct cgcatcaacc gcagccttct
     3121 ctgttgcacg gcgatttatg gtccggcaac tgtgcgctgg gtccggatgg cccgtacatt
     3181 ttcgaccctg cctgctactg gggtgaccga gagtgcgacc tggcgatgtt accgctgcat
     3241 actgaacagc cgccacaaat ctatgacggc tatcagtcag tatccccgct acctgccgat
     3301 ttccttgaac gtcaaccggt ttaccaactc tacacgctgt taaatcgtgc aaggttattt
     3361 ggcggtcagc atttggttat tgctcagcag tcactggata gattattagc agcatgatat
     3421 gggttgaaga taatggccgc tgtgtgcggc cttttgatta aataaaccca agcagagaaa
     3481 agaacacata acctgcagca atacaaataa ccggcaggat atacagtgag aaaaactgca
     3541 ggaaaatagt atggtgcgga acaacaatac gggactcaat ttgttcacgc gttagcccct
     3601 cttccccttt ggctttttcc agaatgagtt gatcttcaac accttcccgc aagaagcgcg
     3661 cctggcgact cattcgggca ccggaatcct gcaacgccag tccgacaaaa atcaggatga
     3721 aaatcaccca gaacataacg ttcacgccac cattaaaatt gggcgtcggg gagttatacc
     3781 agaacagatt caaaaaaggc gtattcgcct gcatcatatc gatcatgaca tgagtaaagt
     3841 cgagcatgac cgcattaatg ccttcctggt tttcctgccg ggtattcata aatttcagca
     3901 aagaaatcaa tgtagagatc aatgcaggta taaaaatcac ccaacccaaa atccttttca
     3961 aaacagcaat gtgtccagct tgttgatacg tcatgagttc tccttgatta agacgcgtcg
     4021 tttcacttag tttacctgta gatatctgtt ttcgcccatt ctttaaaggc gatatgatag
     4081 gcgcttaatc ataagcacgg cttaatacct tacacataat gctctaaagg agaggttgta
     4141 atgtcaaccc cgcgtcagat tcttgctgca atttttgata tggatggatt acttatcgac
     4201 tcagaacctt tatgggatcg agccgaactg gatgtgatgg caagcctggg ggtggatatc
     4261 tcccgtcgta acgagctgcc ggacacctta ggtttacgca tcgatatggt ggtcgatctt
     4321 tggtacgccc ggcaaccgtg gaatgggcca agccgtcagg aagtagtaga acgggttatt
     4381 gcccgtgcca tttcactggt tgaagagaca cgtccattat taccaggcgt gcgcgaagct
     4441 gttgcgttat gcaaagaaca aggtttattg gtgggactgg cctccgcgtc accactacat
     4501 atgctggaaa aagtgttgac catgtttgac ttacgcgaca gtttcgatgc cctcgcctcg
     4561 gctgaaaaac tgccttacag caagccgcat ccgcaagtat atctcgactg cgcagcaaaa
     4621 ctgggcgttg acccactgac ctgcgtggcg ctggaagact cggtaaatgg catgatcgct
     4681 tctaaagcag cccgcatgcg ttccatcgtc gttcctgcgc cagaagcgca aaatgatcca
     4741 cgttttgtat tagcaaacgt caaactctca tcgctgacag aactcaccgc aaaagacctt
     4801 ctcggttaat gaccaggggc agtgatcacg ctgcccctgg ttctttatct gaatttgcat
     4861 tcaactgacg gattaatcgt caatttaaga gaaagagtta caccgtcacc acttccgtgc
     4921 actgtataaa aatcctatac tgtacgtatc gacagtttag tgagttttat catgacggcg
     4981 gaaggtcacc ttctcttttc tattgcttgt gcggtatttg ccaaaaatgc cgagctgacg
     5041 cccgtgctgg cacagggtga ctggtggcat attgtccctt ccgcaatcct gacgtgtttg
     5101 ttaccggaca tcgatcaccc aaagtcgttt cttgggcagc gattaaaatg gatatcaaaa
     5161 ccgatcgccc gcgcttttgg gcatcgtggt tttacccaca gtctgctggc ggtatttgcg
     5221 ctgctggcaa ccttttacct taaggttccg gaaggctggt tcattccggc tgatgcgcta
     5281 caaggaatgg tgctgggtta tttgagccac atacttgccg atatgctgac acccgccggt
     5341 gttcccctgc tctggccatg ccgctggcgt ttccgcttgc ctatcctagt tccccaaaag
     5401 ggcaaccaac tggaacgttt tatctgtatg gcattatttg tctggtcggt atggatgccc
     5461 cattcattac ccgagaacag cgctgttcgt tggtcatcgc aaataatcaa taccttgcag
     5521 atccagtttc atcggcttat taagcatcag gttgaatact aaaaagacaa aaatcacctt
     5581 tctggaataa gcaattccat ttgaatataa gagccagctc acagttctgt taatcttgcg
     5641 ccaacactat gactgctacg cagtgataga aataataaga tcaggagaac ggggatgaac
     5701 tttccattaa ttgcgaacat cgtggtgttc gttgtactgc tgtttgcgct ggctcagacc
     5761 cgccataaac agtggagtct ggcgaaaaaa gtgctggtgg gtctggtgat gggtgtggtt
     5821 tttggccttg ccctgcatac catttatggt tctgacagcc aggtacttaa agattctgta
     5881 cagtggttta acatcgttgg taacggctat gttcaactgc tgcaaatgat cgttatgccg
     5941 ttagtcttcg cctctattct gagcgcggtt gcccgtctgc ataacgcatc tcagttaggc
     6001 aaaatcagtt ttctgaccat cggtacgctt ttgtttacca cgctgattgc ggcgctggtc
     6061 ggtgtgctgg tcaccaacct gtttggtttg acggctgaag gtctggttca gggtggtgca
     6121 gaaactgcac gtctgaacgc cattgaaagt aactatgttg gtaaagtctc tgatctgagc
     6181 gttccgcagc tggtcttgtc ctttatcccg aaaaacccgt ttgccgatct taccggagcc
     6241 aatccgacgt caattatcag cgtggtaatt tttgccgcat tcctcggcgt agctgcattg
     6301 aaactgctga aggatgatgc gccgaaaggt gaacgcgtct tagccgctat cgatacccta
     6361 caaagctggg tgatgaaact ggttcgcctt gtcatgcagt tgacccctta cggcgttctg
     6421 gctctaatga ccaaagtggt tgcaggttct aacttgcaag acatcatcaa actgggaagt
     6481 ttcgttgtcg cgtcctacct cggtctgctg attatgtttg cagtgcatgg cattctgctg
     6541 ggcattaatg gcgtgagtcc gctgaagtac ttccgtaagg tatggcctgt gctgacgttt
     6601 gcctttacca gccgttccag tgctgcgtct atcccactga atgtggaagc acaaacgcgt
     6661 cgtctgggcg ttcctgaatc catcgccagt ttcgccgcct ctttcggtgc aaccattggt
     6721 cagaacggct gcgccggttt gtatccggca atgctggcgg tgatggttgc gcctacggtt
     6781 ggcattaacc cgctggaccc gatgtggatt gcgacgctgg tcggtattgt taccgttagt
     6841 tccgcaggcg ttgccggtgt cggtggtggt gcaactttcg ccgcactgat tgtgctgcct
     6901 gcgatgggcc tgccagtaac cctggtggcg ctgttaatct ccgttgaacc gcttatcgac
     6961 atgggccgta cggcgctaaa cgttagtggc tcgatgacag ctggcacgct gaccagccag
     7021 tggctgaagc aaaccgataa agccattctg gatagcgaag acgacgccga actggcacac
     7081 cgttaattct tatgctggca atggtccgtt ttgtataggg gccgttgctt tactttttaa
     7141 atgttccatc gcggcgatgc atactgactc atatttaaac agatcgtcag cgaa
//
LOCUS       DAJVUY010000187         7185 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.188, whole genome shotgun sequence.
ACCESSION   DAJVUY010000187 DAJVUY010000000
VERSION     DAJVUY010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7185
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.188"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(816..1346)
                     /locus_tag="OQQ72_003697"
                     /pseudo
     CDS             complement(816..1346)
                     /locus_tag="OQQ72_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416483.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
     gene            complement(1689..2339)
                     /gene="zinT"
                     /locus_tag="OQQ72_003698"
     CDS             complement(1689..2339)
                     /gene="zinT"
                     /locus_tag="OQQ72_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HCS2013275.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(2596..3231)
                     /gene="msrQ"
                     /locus_tag="OQQ72_003699"
     CDS             complement(2596..3231)
                     /gene="msrQ"
                     /locus_tag="OQQ72_003699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HCS2013276.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(3232..4236)
                     /gene="msrP"
                     /locus_tag="OQQ72_003700"
     CDS             complement(3232..4236)
                     /gene="msrP"
                     /locus_tag="OQQ72_003700"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HCS2013277.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(4345..4701)
                     /gene="hiuH"
                     /locus_tag="OQQ72_003701"
     CDS             complement(4345..4701)
                     /gene="hiuH"
                     /locus_tag="OQQ72_003701"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS2013278.1"
                     /translation="MVYAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTA
                     KTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYH
                     VPLLLSQYGYSTYRGS"
     gene            4872..5543
                     /gene="hprR"
                     /locus_tag="OQQ72_003702"
     CDS             4872..5543
                     /gene="hprR"
                     /locus_tag="OQQ72_003702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HCS2013279.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            5543..6901
                     /gene="hprS"
                     /locus_tag="OQQ72_003703"
     CDS             5543..6901
                     /gene="hprS"
                     /locus_tag="OQQ72_003703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     HprS"
                     /protein_id="HCS2013280.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDDMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDIASLGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSASYHYLNKHNVFRITLPQ
                     RN"
     gene            complement(7009..>7185)
                     /locus_tag="OQQ72_003704"
     CDS             complement(7009..>7185)
                     /locus_tag="OQQ72_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310732.1"
                     /note="Hsp31 stabilizes early unfolding protein
                     intermediates under severe heat stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HCS2013281.1"
                     /translation="HLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANAL
                     GKLAAQEMLAAYAG"
BASE COUNT         2017 a         1483 c         1623 g         2062 t
ORIGIN      
        1 aagcgtgctt tcccaatctg gggcaaatca cgtctgaatg acacctgaaa acaggtggtg
       61 gactcaagaa ggcttggaat attcttcttt aatgttatgt aattcattga tttttcgtgt
      121 acgattttaa gacatttttt ccaagaaaaa tttttaactc tttgattttt cgactctgta
      181 tcatcggtct cgaaaaccgg agtaggggca actctaccgg gggggcaaat ccccctctct
      241 ccgccacttt atcaatgact tatctcccga cttcccgcct tacttttcct aaacagaaca
      301 atcgtagaat attcttgaag ggttagatcg tcactgtttt ctgttcgata ctgtgacatt
      361 cagcacttga ttcgctatgg atctgacagg aagctttcga gcgaaaatgt gcagttattc
      421 agtcgttttc ttatcgctca ccattattct tttagacatt catcctatga aactgccgca
      481 aagttggtgg tgggaactga agttgcgtag agaaggggtc aataattgag tcaaaaaagg
      541 aacgcggccg tcagattaaa gccgcgggac aaagtccata atttccaaga gttgttgaat
      601 ttcccagctt ttttgaaagc ctttgtatca tactaacaag taaaaaaggt ttaaatacca
      661 aaattaacct gtatttttga taagtcttac cattgtacga tttacacagt ttctgctcct
      721 ccttgttgat agtggaaagg gtgcattgtg cacttgcgta aacatttatg acgcgttgat
      781 gtccatggtt cacatttcct tgtcagggga tcgacttatt tgcggcgagg catcattcgt
      841 aacagagtat tatctttctg aatgtagtga tgaaagagtg ctgcgccagc gtgagctgcg
      901 attaaaaagt aacctatatt tgcccaggtt tcgtgaatat tttatatcag tgctttaatt
      961 tcgctgtttg gggtaacaaa gggagacaca ttgaaaccaa ggaaactcca cgattttcca
     1021 ctgtaagcca tcaaagcaat ccccagcaga ggaagtgcaa ggaaggttat ataaagcatg
     1081 atgtgcatta gcgaagccgc tttcatttgc caggcaggtg gcggtggcac aatagaagga
     1141 tcactataac ggtgttttat aatcaggcgt gaaaacatta acacccaaac gaatataccc
     1201 gcattgtaat gtgtttctcg catcagcaga taagtactac tacctttagg aaaccagcca
     1261 cggagttcca tcgcggcata ggttattgca acgaaaagca gcgttatcca atgtaaataa
     1321 atttgagttt ttgagaatcg gttcattttt gtagctcctg taatttttac agtcaagcta
     1381 tcccacgaac cttaaaaatt ccttatacag atgtgatttt aagaatttgt tatttaaaaa
     1441 attgatagtg cacattgtaa ccagccaata taagcaatgg cgtgagcaca ggtatctttc
     1501 tctgttggcc gtattgtgta tggaatccgt tattggttaa ctcaatgcgg gttagcttat
     1561 taatatacag acacgtcata gtgatgagcg tgtctgtagc tagcttgcgt tcagtggcgt
     1621 ttgtggatgg accagtggca gttatgatga cttactaaag cggcatcgag gcgttatcat
     1681 gagaatactc aatgagacat catttcctcg accacttctt cgctactcaa ctgatatgga
     1741 taatacgttg gccagttttc catttcattt aataaagatt gctgtgaatc attacccata
     1801 aaaatgtgaa aatgagatga ttttcgtggt gcaattatat gatcgctaaa ttgtatatat
     1861 ttaggggctt tgctttcagg atctttacat tcgaataagt aacgaacgcc tttcttgcct
     1921 gatttatagg tgagtatttt gtatccatcg taatcatatt tacaggatgt tgtttcatta
     1981 tttctatgga attcaacaat gccgtcctca atgccaatca tctcgatatc tgttgcataa
     2041 cctttgtgat aataatcttt aatttcagca aatgttttag ttttatctgc atccgctttc
     2101 ttctgaaaga cggggtcaag tttgccactt tgcagtaaag gataaacgga ttgccagacc
     2161 ccatcccagt cactgagcgt tcggttttgt acattggcat catcaaaaac accattagca
     2221 gctttttgtt cgacctctgt taagggtttg ccgtgtgagt gatgaccatg cgaaaaggca
     2281 ggagcgctaa caataaagac acctaacgca acagccagtt tgtgaagacg aatcgccaaa
     2341 acagtttcct ccagagtcat tgtatatgat gtgtaatgtt atattgtaac atatggcaaa
     2401 atgcaacaac tcttaggaga tgagagcata gttttctcag gtgtacttat ctatcttatt
     2461 gaaataaaat gaattatatt gataatttga ggttgatgac aaacgaaaca taatctgatg
     2521 tgatctgcgt aggccggata gggcgctcgc gccgcatccg gcagggataa cgcgtacttt
     2581 gtcggcaata tgaagttata cagataattt gttgtgaacc tgcttgcgta accggttaaa
     2641 aagggaacgc aacttcttat accgtaaggc taaaagcagt acagccagcc cagcgtagat
     2701 gagcggctgc ggtgaaataa tcttcactga ccacagataa tgtattgggg ccaggatcgc
     2761 gacaagatag acgaaattat gcaactgttg ccagtgcttg ccgagttttc gctgcatcgc
     2821 ctgggttgaa gtaaacgcta aagcaagcaa aataacccag ctgataattc ctaacgttaa
     2881 ataaggccgg gtaattaact ccttgcctaa taacgccaga ttattcacgc ccagctccag
     2941 caatgcgtaa ctggttaaat gcagtgtcgc ccaggcaaag caccataagc ctaacaggcg
     3001 gcgagtgcgt atcaataacg gctgttttgc gtagcgtgcc agaggtgtga ttaacaaggt
     3061 cgccagcaaa aatttcagtg cagtgcgacc ggtaaaatgc tgaatatctt tcaccggatc
     3121 ggcacccagt ccaccgtgat tgatcgccca gaccagccag agaaacggca acaatccggc
     3181 aagatgcagg ctaactttca gccatgtcac ctgttttgct gtcagacgca ttcagaaatt
     3241 ctcccgcaaa tccaggccac gatacagcga tgccacctgg tcggcgtaac cattaaacag
     3301 tagcgttggc tggcgctgaa catcgaggat gccgcctgaa ccaataaatc gttcggtagc
     3361 ctgtgaccag cgcgggtgat caacatgcgg attaacgttg gcgtaaaaac cgtattcgtc
     3421 aggcgctgcc agattccagg tggttggcgg acgctcgcgg gtcagcttaa tactgactat
     3481 cgatttaatc cctttaaagc catatttcca cggcacaatc agtcgtaccg gcgcgccatt
     3541 ttgtggcggt aacgccttgc cataaacacc cacggtcatc agtgtgagcg gatgcattgc
     3601 ttcgtcgaga cgcaatcctt cgacataagg atatttcagc ccgccgccga taaagcggtc
     3661 ctgctggcct ggcatttgtt ccggtgcata aattgtttcg aaagcgacat acttcgcatt
     3721 gctggtgggt tcggcaagcg ccagcaattt gtgcagcgga aaaccaatcc acggcaccac
     3781 catcgaccat gcctccacgc agcgcatacg ataaatacgc tcttccagcg ggaagcgacg
     3841 ggttaaatca tcgtgatcga gggtcaatgg ttttgccact tcgccgctga ttttcagtgt
     3901 ccatggatcg gttttcaggc taccagcatt agcggcggga tcggctttat ccagcccgaa
     3961 ttcatagaag ttgttataac cggagacttt atctactggc gtcagtggca ggttattttg
     4021 ccaggcggca ggcttgctga actccagcgg ttttccggcg ggggcgggcg ggcgatcgtt
     4081 ccctttaaac cagctaagca gatcggcatg cgcagcgtga ggcaaagaaa gtgcagctgc
     4141 actgatgccc agtgctttta acacctgccg acgcttcata aagaataccg actcggccgt
     4201 aacatctgat tcttttaaaa attgattctt tttcataagc catcacactt ttttgtcgtt
     4261 agccagcaag agccgtttac tgttaatctg tcagggagtg tcctccctaa cagtagcaga
     4321 gatctgcttt tacatattta tgcattaact gccacgatag gttgaatacc catattggct
     4381 aagtaataaa ggcacatgat aatgctcgtt cactttatta atatgaaatt caacggggat
     4441 ctcagggaag aaactttcaa gattttgttt cttgaaatag tccccggttt taaatacgac
     4501 acggtaatcg cccgtagttg cagtttgctc gggccacagt gctttaattc gtccatcctt
     4561 atctgttttg gcggtattaa gttgtaacca gccgttatcc gccttctttt caagagtgac
     4621 tgtcacgtca gcagcgggtt ttccggtttg ctggttcaaa atgtgcacgc taagaatgtt
     4681 ttgttgtgcg gcataaacca aagaaggtaa tgaaaatgct gcaaataacg ctttaacatg
     4741 tttatatcct tgtcatgtga atgagttttg aggatagcga aaaagcggcc agggtaacct
     4801 tacagcagca ttacaatttt gtaatgaacc aggctgtttc tataacatat gatttatggc
     4861 atattatttt catgaagatt ttacttattg aagataatca aaggacccag gagtgggtaa
     4921 cgcaggggct ttccgaagcg ggttatgtca ttgatgccgt ttctgatggc agagatgggc
     4981 tttatcttgc gctgaaggat gattatgcat tgataattct ggatattatg cttccgggta
     5041 tggatggctg gcagatctta caaacgttaa gaacagcaaa gcaaacccct gttatttgcc
     5101 ttactgcaag ggattctgtc gatgacagag tcagagggct ggacagtgga gcaaatgatt
     5161 atctggtaaa acctttttca ttttctgagt tgctggcaag ggttcgggca caattaaggc
     5221 aacatcacgc tttgaattca acattagaaa tcagtggctt aagaatggac tctgtaagtc
     5281 aaagtgtgag cagggacaat atcagtatta cactgacgcg caaggagttt cagttacttt
     5341 ggctactggc ctccagagct ggcgaaatta tacccagaac ggttattgcg agtgaaattt
     5401 ggggaatcaa ctttgatagt gataccaata cggtggatgt cgccattcgc aggctccgcg
     5461 caaaagttga tgatcctttt cctgaaaagc taatcgccac aatccggggg atgggctatt
     5521 cattcgtagc ggtaaaaaaa taatgaaaag attgtctata accgtccgtt taaccttgct
     5581 ttttatattg ctgctgtctg ttgctggcgc tggaattgtc tggactctct ataatggcct
     5641 ggcaagtgag ttgaaatggc gcgatgatac aacactcatt aaccggacag cacagatcaa
     5701 gcagttgtta attgatgggg taaatccaga tacgttacct gtatacttta accggatgat
     5761 ggatgttagt caggatatct tgatcattca tggtgatggc atcaataaaa ttgttaaccg
     5821 gacaaatgtc agtgatgaca tgttaaataa catacctgct agtgagacaa tcagcgcagc
     5881 tggcatttac agaagcatta ttaatgatac tgagattgat gctttacgaa ttaatattga
     5941 tgaagtttcg ccatcattaa cggttactgt ggctaaattg gcttcagcta gacataacat
     6001 gcttgaacag tataaaatta atagcattat aatttgcatt gtcgccattg tactttgctc
     6061 agtattaagt ccgctgttaa tcagaacggg attacgagag atcaaaaagt tgagtggtgt
     6121 aacggaagcg ctgaattata acgatagccg agagcctgtt gaggttagcg cattaccgag
     6181 agaactaaaa cctcttgggc aggcgttgaa taaaatgcat caagccttag tcaaagattt
     6241 tgaacgccta agtcaatttg ctgacgatct cgctcatgaa cttagaacgc ccattaatgc
     6301 attactgggt cagaatcagg ttacgctcag tcaaaccaga agtatcgctg aatatcaaaa
     6361 aacaattgcc ggtaacattg aagagttgga aaatatttcg cggttaacag agaacatact
     6421 gtttcttgcc cgggcagata aaaacaatgt tttggtgaaa ctggactcgc tttctctcaa
     6481 taaggaagtc gaaaatttgt tggattatct tgaatatctt tcagacgaga aagagatttg
     6541 ctttaaggtc gagtgcaatc agcaaatctt tgcggataaa attttactgc aacgaatgtt
     6601 atcgaatctt attgttaatg ccattagata ttcaccagaa aaatcgcgta ttcatataac
     6661 cagttttctt gataccaacg gctatcttaa tattgatatc gccagtcttg gaacgaaaat
     6721 acatgagcct gaaaaactct tccgtagatt ttggcgggga gataattcgc gtcattccgt
     6781 aggtcaggga cttggtcttt ctttagtcaa agcgattgcc gaattgcatg ggggaagtgc
     6841 ttcatatcac tatctcaata agcataatgt gttccgaatt acgttaccgc aaagaaatta
     6901 acatagggct tcagtacgcc ataaattaac cgtgaaaaaa cgcagccacg tcgtgagtac
     6961 taacgcggct gcgattaatt atgcgcttac attcaaacgt aacagggatt aacccgcgta
     7021 agctgccagc atttcctgcg ccgccagttt acccaacgca ttcgctgcga aaggactgtc
     7081 gccggtgaga agtttacggt ccttatgtac tcgcccggtg atgtcgtcat taatgatgtt
     7141 catgcccatt ttcttcagct cttcgccgaa gtaccaggtg agatg
//
LOCUS       DAJVUY010000188         7137 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.189, whole genome shotgun sequence.
ACCESSION   DAJVUY010000188 DAJVUY010000000
VERSION     DAJVUY010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7137
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.189"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            126..191
                     /gene="yobI"
                     /locus_tag="OQQ72_003705"
     CDS             126..191
                     /gene="yobI"
                     /locus_tag="OQQ72_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response small protein YobI"
                     /protein_id="HCS2013282.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            330..941
                     /gene="ruvA"
                     /locus_tag="OQQ72_003706"
     CDS             330..941
                     /gene="ruvA"
                     /locus_tag="OQQ72_003706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCS2013283.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            950..1960
                     /gene="ruvB"
                     /locus_tag="OQQ72_003707"
     CDS             950..1960
                     /gene="ruvB"
                     /locus_tag="OQQ72_003707"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCS2013284.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(2010..2795)
                     /gene="znuB"
                     /locus_tag="OQQ72_003708"
     CDS             complement(2010..2795)
                     /gene="znuB"
                     /locus_tag="OQQ72_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HCS2013285.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKHPQLALDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2792..3547)
                     /gene="znuC"
                     /locus_tag="OQQ72_003709"
     CDS             complement(2792..3547)
                     /gene="znuC"
                     /locus_tag="OQQ72_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HCS2013286.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3626..4558
                     /gene="znuA"
                     /locus_tag="OQQ72_003710"
     CDS             3626..4558
                     /gene="znuA"
                     /locus_tag="OQQ72_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HCS2013287.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4574..5896
                     /gene="mepM"
                     /locus_tag="OQQ72_003711"
     CDS             4574..5896
                     /gene="mepM"
                     /locus_tag="OQQ72_003711"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HCS2013288.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            6016..6987
                     /gene="lpxM"
                     /locus_tag="OQQ72_003712"
                     /gene_synonym="msbB"
     CDS             6016..6987
                     /gene="lpxM"
                     /locus_tag="OQQ72_003712"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS2013289.1"
                     /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRRPGEIQPYKRKDLYPIK"
BASE COUNT         1883 a         1724 c         1827 g         1703 t
ORIGIN      
        1 tacatgtaaa gacgatatct ccaatttcat attcagcagg gtaattaata ttcacgttgt
       61 cattccattg aaatagatac gaatatacgt aatagcataa aaaaattatt ttttcaggag
      121 gtgcaatgta tatttttatt acgcatttct tcactgaata cgtaatattt aaatatttgc
      181 ttccaatata acctgtagaa taaatcatac tgcgccattt ttcagttcat cgagacacct
      241 cgcaagtttt cttcatcctt cgctggatat ctatccagca tttttttatc atacagcatt
      301 atctttgatt cattacgcag gagcgtcatg tgataggcag actcagaggc atcatcattg
      361 aaaaacaacc cccgctggtg ttaattgaag tgggcggcgt aggctatgaa gtgcatatgc
      421 cgatgacctg tttttatgaa ctccctgaag cgggtcagga agcgatcgtt ttcacccact
      481 ttgtggtgcg tgaagacgcg caactgctgt acggttttaa caataaacaa gagcgcacat
      541 tgttcaaaga gttgatcaaa accaacggcg tcggcccgaa gttggcgctg gcgatcctct
      601 ccggaatgtc agcgcagcag ttcgttaatg ccgttgaacg tgaagaagtg ggggcactgg
      661 tgaaactgcc gggtattggc aaaaaaaccg ccgaacgctt gattgttgaa atgaaagacc
      721 gatttaaagg tttgcatggc gatctgttta cccctgccgc cgacctggta ctcacatcac
      781 ctgccagccc ggcgaccgac gatgctgaac aggaagcggt tgccgcgctg gtggcgctgg
      841 gctataaacc acaagaagca agccgcatgg tgagcaaaat cgctcgccct gacgccagca
      901 gtgaaacatt aattcgcgaa gccctacgcg ccgcgttatg aggtaaagga tgattgaagc
      961 agaccgtctg atttctgccg gtaccacttt gccggaagat gtagcagatc gcgccattcg
     1021 ccctaaatta ctggaagagt atgttggtca gccgcaggtt cgttcacaga tggagatttt
     1081 catcaaagca gcgaaactgc gcggcgatgc cctcgatcat ttgttgattt ttggtcctcc
     1141 ggggttgggt aaaactacgc ttgccaacat tgtcgccaat gaaatgggcg ttaatttacg
     1201 cacgacttct ggtccggtgc tggaaaaggc gggcgatctg gcagcgatgc tcactaacct
     1261 tgaaccgcat gacgtgctgt ttattgatga gatccaccgt ttatcgccag ttgttgaaga
     1321 agtgctgtac ccggcaatgg aagactacca actggatatc atgattggtg aaggtccggc
     1381 ggcacgctcc attaaaattg atttgccgcc gtttaccctg attggcgcaa ccacgcgcgc
     1441 aggttcgctg acatcaccgt tgcgcgaccg ttttggtatt gtgcaacgtc tggagtttta
     1501 tcaggtgccg gatctgcaat atatcgttag tcgcagtgca cgctttatgg ggcttgagat
     1561 gagtgatgac ggcgcgctgg aagttgctcg tcgcgctcgc ggtacgccac gtattgccaa
     1621 ccgtctgctg cgtcgagtgc gtgatttcgc cgaagtgaag cacgatggca ccatctcggc
     1681 agatatcgct gctcaggcgc tggacatgtt gaatgtcgat gctgaaggtt tcgattatat
     1741 ggaccgcaaa ttgttgctgg cggtaatcga taagttcttt ggtgggccgg taggtctgga
     1801 taacctggcg gcggctattg gcgaagaacg tgaaaccatt gaggatgtgc tggaacctta
     1861 tttgattcag caaggctttt tgcagcgtac accgcgtggg cgtatggcga cgacgcgggc
     1921 gtggaatcac tttggcataa cgccgccaga aatgccgtaa gtcggattgg tcgctcgcga
     1981 cgcatccgac aaatgtgttc agcgatagat tagctggcct gctttttcat catactgata
     2041 ataaataaca gtgctgcaca tagcaccacc gacggacccg ccggcgtatc gtaaaatgcg
     2101 gaaaaggtta aaccgcccgt tacggcaacc atccccacca acacagcgac acctgccatc
     2161 tgttccggcg tgcgggcaaa gcgacgtgca gtagcagcag gaataatcag cagtgaagta
     2221 ataatcaacg cgccaacaaa tttcatcgct acaccaatcg tcaatgccgt caccagcatc
     2281 aacaacaatt tcacgcgctg taatttcaca ccatcaacaa acgccagatc cgggctaatc
     2341 gtcatcgaca gcaaattgcg ccattgccag aacaaaatag ccaccacgat gaccacgcca
     2401 atcgcaatag cgatgagatc ttctggcgtc actgccagca aatcaccgaa caggtaagcc
     2461 atcaaatcaa cacgaatgtt agacatcaga ctaacgacca ccaggcccag cgacagggca
     2521 ctgtgcgcca taatccctaa taacgtgtca agcgccagct gtggatgttt ctccagccat
     2581 accagaccgc ccgccaggag cagcgtaacg gcaattaccg catagaatgg attcacgtcc
     2641 agcaacaaac caaacgcgac gccaagtaat gaggcatgag ccagcgtatc accgaaataa
     2701 gacatacgac gccagactac aaacgaaccc agcggacccg cggcacaggc gagcatgatc
     2761 ccggctaacc aaccgggaaa taataattca atcatgagcg atcatttccc cgacgcaaaa
     2821 caattcgtcc ctgtaaatcg tgacgatgat tatgatgatg gcgatagata cccagttgtt
     2881 cagcaccacg aggaccaaac atagaaataa actccggatg tagggaaaca acttccggtg
     2941 tgccggaaca acaaatgtgg tgattcagac acagcacttc atcggttttt gccattacca
     3001 gatgcagatc gtgagagacc attaaaacgc cacaatccag ttcgcgacgc aactggtcaa
     3061 taaggtcata taacgccacc tggccattta catccacgcc ttgagtgggt tcatccagca
     3121 ctaataattg cggtcgattt aacaatgctc gcgctaacag tacacgctgt gtttcgccac
     3181 cagagagctt ttgcatcggt gcgttaatca gatgcccggc ctggacacgt ttcagtgcag
     3241 gcaaaatatc ttctttatgt gtgccagggc gtaagcgtaa aaaacggttt acggtcagtg
     3301 gcaacgtggt gtcgagatac agcttctgcg gtacatagcc gatgcgtagt tttccgttgc
     3361 gcttgataac cccttcatcg ggtgttacca gcccgagcac tacccgtacc agtgtcgact
     3421 tacctgcgcc atttggccca agtaaagtca aaatttttcc aggtttaagt tccagcgaca
     3481 catcagagag gacgcggcgt tggccaaaag aaactgagac attttccagg gaaaccagac
     3541 ttgtcatgtt aattttagtc ttgcagtagt catgagatgt tataatatca cacttctcat
     3601 attcattacg atgattggtc gcattatgtt acataaaaaa acgcttcttt tcgcagcatt
     3661 atccgccgct ctctggggag gtgcaacaca ggccgcagat gccgccgttg tcgcttcgct
     3721 taaacccgtt gggttcatcg cttctgccat tgctgatggt gtaacagaaa cggaggtttt
     3781 actgcctgac ggcgcttcag aacatgatta ttcactgcgt ccatcggatg taaaacgctt
     3841 acagaacgcg gacttagtcg tttgggttgg cccggagatg gaagcgttta tgcaaaaacc
     3901 ggtaagcaaa ttactaggag cgaagcaggt aacgattgcg cagcttgaag atgtgaaact
     3961 gctactgatg aaaagtattc acggcgatga tgatgatcac gaccacgcgg aaaaaagtga
     4021 agaagatcac catcacggcg atttcaacat gcatctttgg ctttccccag agatagcgcg
     4081 ggctacagcg gttgcaatcc atggaaaatt agtggaactt atgccgcaaa gtcgagccaa
     4141 acttgacgcc aacctgaagg attttgaggc acaattagcc tcaaccgaaa cgcaggttgg
     4201 taacgagctc gcgccgctca aggggaaagg ttatttcgtt tttcacgatg cttacggcta
     4261 tttcgaaaaa cagttcggac tgacaccgct tggtcatttt accgttaacc ctgagattca
     4321 acctggcgcg cagcgtttac atgaaataag aacacagttg gttgagcaaa aagcaacctg
     4381 cgtttttgct gagccacagt tcaggccagc ggtcgttgag agcgtcgcac gagggacatc
     4441 cgttcgtatg ggaacgttgg atcccttggg gacgaatatc aaactgggta aaacaagcta
     4501 ttcagaattc ctgagtcaat tagccaacca gtatgcgagc tgcctgaaag gagattaatg
     4561 aggaagtgat tacgtgcaac agatagcccg ctctgtcgcc ctggcgttta ataatttacc
     4621 gcgaccacac cgcgttatgt tggggtcgct caccgttctt actctggccg tcgctgtctg
     4681 gcggccctat gtttatcacc gcgatgccac gccaattgtc aaaaccattg agctggaaca
     4741 gaacgaaatt cgttcgctct tacctgaagc cagtgagccg attgatcaag ctgcacaaga
     4801 agatgaagcc attccccagg acgaactgga tgacaaaatc gccggtgaag cgggcgtgca
     4861 tgaatatgtt gtttccactg gcgatacgct aagcagcatt ctcaatcagt atggtattga
     4921 tatgggtgat atcacccaac tggctgcggc cgacaaagaa ttgcgtaacc tgaaaatcgg
     4981 tcaacaactc tcctggacat taaccgcgga cggcgaactg cagcgcctca cctgggaagt
     5041 gtctcgtcgt gaaacccgaa cctatgaccg tactgccgct aacggtttta aaatgaccag
     5101 cgaaatgcag caaggagagt gggttaacaa tctgctgaaa ggtaccgtcg gagggagctt
     5161 tgttgccagc gccagaaacg ccggtttaac cagcgccgaa gtgagcgcag tgattaaagc
     5221 catgcagtgg caaatggatt tccgcaaact gaaaaaaggc gatgaatttg cggtgttaat
     5281 gtctcgagag atgcttgatg gtaaacgtga gcaaagccag ctgctgggcg tacgtttgcg
     5341 ttcagaaggt aaagattatt acgcaatccg cgctgaggat ggcaaattct acgaccgtaa
     5401 cggtactggt ctggcgaaag gattcttgcg attcccgacg gcgaaacagt tccgtatctc
     5461 gtctaacttt aacccgcgtc gtactaatcc ggtgaccggt cgcgttgcac cacacagagg
     5521 tgttgatttc gccatgccgc agggtacgcc agtgctttca gtgggtgacg gtgaagtggt
     5581 ggttgccaaa cgcagtggcg cagcaggtta ttatgtggct attcgtcatg gtcgcagcta
     5641 caccacgcgt tatatgcact tgcgcaagat tctggtgaaa ccgggacaga aggtgaaacg
     5701 tggcgaccgt atcgcgcttt ccggtaatac cggacgttca accgggccgc atctgcacta
     5761 tgaagtatgg ataaaccagc aggccgtaaa cccgctgacg gcaaaactgc cgcgtaccga
     5821 agggctgacc ggctccgatc gtcgcgaatt cctggcgcag gccaaagaga ttgtgccgca
     5881 gctacggttt gattaattaa catccattcg cagccggtac gcagtcagta ccggcttttt
     5941 ttatttggtg cggggcaagt tgcgccgcta cactatcacc agattgattt ttgccttatc
     6001 cgaaactgga aaagcatgga aacgaaaaaa aataatagcg aatacattcc tgagtttgat
     6061 aaatcctttc gccacccgcg ctactgggga gcatggctgg gcgtagcagc gatggtgggt
     6121 atcgctttaa cgccgccaaa gttccgtgat cccattctgg cacggctggg acgttttgcc
     6181 ggacgactgg gaaaaagctc acgccgtcgt gcgttaatca atctgtcgct ctgctttcca
     6241 gaacgtagtg aagctgaacg cgaagcgatt gttgatgaga tgtttgccac cgcgccgcaa
     6301 gcgatggcaa tgatggctga gttggcaata cgcggaccgg agaaaattca gccgcgcgtt
     6361 gactggcaag ggctgcagat catcgaagag atgaggcgta ataacgagaa agttatcttt
     6421 ctggtgccgc acggttgggc cgtcgatatt cctgccatgc tgatggcctc gcaagggcag
     6481 aaaatggcag cgatgttcca taatcagggc aacccggttt ttgattatgt ctggaacacg
     6541 gtgcgtcgtc gctttggcgg tcgtctgcat gcgagaaatg acggtattaa accattcatc
     6601 cagtcggtac gtcaggggta ctggggatat tatttacccg atcaggatca tggcccagag
     6661 cacagcgaat ttgtggattt ctttgccacc tataaagcga cgttgcccgc gattggtcgt
     6721 ttgatgaaag tgtgccgtgc gcgcgttgta ccgctgtttc cgatttatga tggcaagacg
     6781 catcgtctga cgattcaggt gcgcccaccg atggatgatc tgttagaggc ggatgatcat
     6841 acgattgcgc ggcggatgaa tgaagaagtc gagatttttg ttggtccgcg accagaacaa
     6901 tacacctgga tactaaaatt gctgaaaact cgcagaccgg gcgaaatcca accgtataag
     6961 cgtaaagatc tttatcctat caaataaaaa aaagcctctc aaattattga gaggctgtac
     7021 tcgataaaaa atctcaatga gtgttcccac tattttgagt ttttaggtta gtacgctatt
     7081 gagttaatcg tagcgtgata atttcaaaag gtttgaactc aagattgcaa tattgat
//
LOCUS       DAJVUY010000189         7121 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.190, whole genome shotgun sequence.
ACCESSION   DAJVUY010000189 DAJVUY010000000
VERSION     DAJVUY010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7121
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.190"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..648
                     /locus_tag="OQQ72_003713"
     CDS             <1..648
                     /locus_tag="OQQ72_003713"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HCS2013290.1"
                     /translation="TYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV
                     QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGH
                     AAFVDAGKLLPNIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE
                     LLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV"
     gene            739..1986
                     /gene="tnaB"
                     /locus_tag="OQQ72_003714"
     CDS             739..1986
                     /gene="tnaB"
                     /locus_tag="OQQ72_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HCS2013291.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLG
                     TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPP
                     ALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV
                     ILFGITVILCWFGNVFNVLPKFG"
     gene            2118..3293
                     /gene="mdtL"
                     /locus_tag="OQQ72_003715"
     CDS             2118..3293
                     /gene="mdtL"
                     /locus_tag="OQQ72_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HCS2013292.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            3268..4227
                     /gene="yidZ"
                     /locus_tag="OQQ72_003716"
     CDS             3268..4227
                     /gene="yidZ"
                     /locus_tag="OQQ72_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HCS2013293.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            4384..5133
                     /locus_tag="OQQ72_003717"
     CDS             4384..5133
                     /locus_tag="OQQ72_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HCS2013294.1"
                     /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            5155..5721
                     /gene="yieF"
                     /locus_tag="OQQ72_003718"
                     /gene_synonym="chrR"
     CDS             5155..5721
                     /gene="yieF"
                     /locus_tag="OQQ72_003718"
                     /gene_synonym="chrR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I chromate reductase YieF"
                     /protein_id="HCS2013295.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(5775..7112)
                     /gene="adeP"
                     /locus_tag="OQQ72_003719"
     CDS             complement(5775..7112)
                     /gene="adeP"
                     /locus_tag="OQQ72_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeP"
                     /protein_id="HCS2013296.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVPGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH"
BASE COUNT         1692 a         1822 c         1803 g         1804 t
ORIGIN      
        1 acctacaaat atgccgatat gctggcgatg tccgccaaga aagatgcgat ggtgccgatg
       61 ggcggcttgc tgtgcatgaa agacgacagc ttctttgatg tgtacaccga gtgcagaacc
      121 ctttgcgtgg tgcaggaagg cttcccgaca tatggcggcc tggaaggcgg cgcgatggag
      181 cgtctggcgg taggtctgta tgacggcatg aatctcgact ggctggctta tcgtatcgcg
      241 caggtacagt atctggtcga tggtctggaa gagattggcg ttgtctgcca gcaggcgggc
      301 ggtcacgcgg cattcgttga tgccggtaaa ctgctgccga atatcccggc agaccagttc
      361 ccggcacagg cgctggcgtg cgagctgtat aaagtcgccg gtatccgtgc ggtagaaatt
      421 ggctctttcc tgttaggccg cgatccgaaa accggtaaac aactgccatg cccggctgaa
      481 ctgctgcgtt taaccattcc gcgcgcaaca tatactcaaa cacatatgga cttcattatt
      541 gaagccttta aacatgtgaa agagaacgcg gcgaatatta aaggattaac ctttacctac
      601 gaaccaaaag tattgcgtca cttcaccgca aaactgaaag aagtttaatt aatactacag
      661 agtggctata aggatgttag ccactctctt accctacatc ctcaataaca aaaatagcct
      721 tcctctaaag gtggcatcat gactgatcaa gctgaaaaaa agcactctgc attttggggt
      781 gttatggtta tagcaggtac agtaattggt ggaggtatgt ttgctttacc tgttgatctt
      841 gccggtgcct ggtttttctg gggtgccttt atccttatca ttgcctggtt ttcaatgctt
      901 cattccgggt tattgttatt agaagcaaat ttaaattatc ctgtcggctc cagttttaac
      961 accatcacca aagatttaat cggtaacacc tggaacatta tcagcggtat taccgttgcc
     1021 ttcgttctct atatcctcac ttatgcctat atctctgcta atggtgcgat cattagtgaa
     1081 acgatatcaa tgaatttggg ctatcacgct aatccacgta ttgtcgggat ctgcacagcc
     1141 attttcgttg ccagcgtatt gtggataagt tcgttagccg ccagtcgcat tacctcattg
     1201 ttcctcgggc tgaagattat ctcctttgtg atcgtgtttg gttctttctt cttccaggtc
     1261 gattactcca tcctgcgcga tgccaccagc accactgcgg gaacgtctta cttcccgtat
     1321 atctttatgg ctttgccggt gtgtctggcg tcatttggtt tccacggcaa tattcccagc
     1381 ctgattattt gctatggaaa acgcaaagat aagttaatca aaagcgtggt atttggttcg
     1441 ctgctggcgc tggtgattta tctcttctgg ctctattgca cgatggggaa tattccgcgc
     1501 gaaagcttta aggcgataat ctcctcaggc ggcaacgttg attcgctggt gaaatcgttc
     1561 ctcggcacca aacagcacgg cattatcgag ttttgcctgc tggtgttctc taacttagct
     1621 gttgccagtt cgttctttgg tgtcacgctg gggttgttcg attatctggc ggacctgttt
     1681 aagattgata actcccacgg cgggcgtttc aaaaccgtgc tgttaacctt cctgccacct
     1741 gcgttgttgt atctgatctt cccgaacggc tttatttacg ggatcggcgg tgccgggctg
     1801 tgcgccacca tctgggcggt cattattccc gcagtgcttg caatcaaagc tcgcaagaag
     1861 tttcccaatc agatgttcac ggtctggggc ggcaatctta ttccggcgat tgtcattctc
     1921 tttggtataa ccgtgatttt gtgctggttc ggcaacgtct ttaacgtgtt acctaaattt
     1981 ggctaaatcc ttcaagaagc cagccattcg ctggcttctt gcctctcagg aaatcactta
     2041 tgtccaaatg gcaactcgcc tgatcctcct tcaccacgta tgctttgcgt caccttacta
     2101 tcaggacgct ttagcccatg tcccgctttt tgatttgtag ttttgccctg gttttacttt
     2161 atcccgccgg gattgatatg tacctcgttg gtttaccgcg catcgccgcc gatctcaatg
     2221 ccagcgaagc gcagttgcat attgcgttct ccgtatatct ggcggggatg gcagctgcga
     2281 tgttatttgc cggtaaagtg gccgatcgtt cagggagaaa gccggtcgcc atacccggcg
     2341 cggcgctatt tattattgcc tcggtgttct gttcactggc tgaaaccagc acgttatttc
     2401 ttgcaggccg atttctacag gggttgggcg caggctgttg ttacgtagtg gcgttcgcca
     2461 ttttgcgcga cacgctggat gatcgacgtc gggctaaagt gctgtcatta ctcaacggta
     2521 ttacctgcat cattccggtg ttagcgccag tgctcggaca tctgattatg cttaaattcc
     2581 cgtggcagag tctgttctgg gcgatggcaa tgatgggcat cgcggtactg atgttgtctt
     2641 tgtttatttt aaaagaaacg cgcccagcgt cccccgctgc ttcggacaaa ccacgagaaa
     2701 atagcgagtc gctgcttaat cggtttttcc tcagccgtgt tgttatcacc accctcagcg
     2761 tttcggtgat cctcactttc gtcaatacat cgccggtatt gctgatggaa atcatgggtt
     2821 ttgagcgcgg agaatacgcc accattatgg cgttgaccgc tggcgtcagc atgaccgttt
     2881 cattctccac gccatttgcg ctgggaattt ttaagccacg tacgttgatg atcacctcgc
     2941 aggtgttatt ccttgcagcg gggatcaccc ttgccgtttc accttcccat gcggtttctc
     3001 tgtttggtat cacactgatt tgcgccggtt tctcggtagg ttttggcgta gcgatgagtc
     3061 aggcgttagg accattttca ttacgcgcgg gcgtagccag ctcgacctta ggtattgcgc
     3121 aggtttgcgg ttcgtcactg tggatttggc tggcagcggt ggttggtatc ggcgcatgga
     3181 atatgctgat cgggattctg attgcctgta gcatagtgag cctgttgctg attatgttcg
     3241 tcgcgcctgg acgccccgtt gccgctcatg aagaaatcca tcaccacgct tgatctcaat
     3301 ctgctgctct gtctgcaact gctgatgcag gagcgcagcg tgaccaaagc ggcgaagcgg
     3361 atgaacgtga ccccttcagc ggtgagtaag tcgctggcaa agttaagagc gtggtttgac
     3421 gacccgctct ttgtgaactc accgctgggg ctgtcgccca caccgctaat ggtcagcatg
     3481 gagcaaaatc tggcggaatg gatgcaaatg agcaatctgc tgctggataa accgcaccac
     3541 cagacaccgc gcggcctgaa gtttgagttg gcggcggaat cgccgctgat gatgatcatg
     3601 cttaatgcgc tgtcgaaacg gatctaccaa cgttacccgc aggcgaccat caaactacgt
     3661 aactgggatt acgattcctt agatgccatt actcgtggtg aagtggatat tggtttttcc
     3721 ggtcgcgaaa gccatcctcg ctcgcgggag ctgttaagct cgctaccgtt agccattgat
     3781 tatgaagtgc tgtttagtga tgtaccctgc gtctggttac gcaaagatca tccggcactg
     3841 catgaaacgt ggaatctgga caccttttta cgttatccgc atatcagcat ttgctgggaa
     3901 cagagcgaca cctgggcgct ggacaatgtg ttacaggagc tggggcgcga acgcacgatt
     3961 gctatgagcc tgccggaatt tgagcagtca ctgtttatgg cagcgcaacc cgacaatctg
     4021 ctactggcga ccgcgccgcg ctactgtcag tactacaatc aactccatca actgccgttg
     4081 gttgctcttc ctctcccgtt tgacgaaagc cagcaaaaaa agctggaagt tccttttacc
     4141 ctgctgtggc ataaacggaa cagtcataat ccgaagatcg tctggttacg ggaaaccatt
     4201 aaaaaccttt acgcgtcgat ggcataaccg aatcgtatga aacgcgaccc aatttcacaa
     4261 taaaatgtaa aaaagttgta ataagcttgt ctgaatcgaa cttttagccg ctttagtctg
     4321 tccatcattc cagtaaatga ttactcttat attcataatg gaccattaag catggagcga
     4381 aaaatggcga ctcactttgc ccgagggatt ttaacggaag gacatctgat ttctgttcgt
     4441 ctcccctccc agtgtcatca agaagcccga aacattcccc ctcatcgtca aagccgtttt
     4501 ctggcgtcca gaggtttact cgcagaactg atgttcatgc tgtatggcat tggcgaattg
     4561 ccggaaatcg tcaccctgcc gaaaggtaaa ccggttttca gtgataaaaa tttgccttcg
     4621 ttttctattt cctatgccgg gaatatggtt ggcgtggcgt taacaaccga aggtgaatgt
     4681 ggcctcgata tggaactaca gcgtgcgacg cgcgggtttc atagcccaca cgcgcccgat
     4741 aaccacacct tttccagcaa tgaatcgcta tggatcagta aacaaaacga tcctaacgaa
     4801 gcgcgggcgc agctcatcac gctgcgccga agcgtgctaa aactaaccgg tgatgttttg
     4861 aatgacgatc cgcgcgatct gcagctgctg cccattgccg gacgcctgaa atgtgctcat
     4921 gtaaatcatg tagaagcgtt atgcgacgcg gaggacgtgc tggtgtggtc cgtggcggtc
     4981 acgcccgcga ttgaaaagct cagtgtctgg gagttagatg gcaaacacag ctggaaaagc
     5041 ctgccggata ttcacagccg cgccaacaat cctaccagcc ggatgatgcg ttttgcccag
     5101 ctctctaccg tgaagtcttt ttcgccaaat tgatagacaa ccacaggagt cattatgtct
     5161 gaaaaattgc aggtggttac gttactgggg agcctgcgca aaggctcatt taatggcatg
     5221 gttgcacgta ccctgccgaa aattgctccg gcgagcatgg aagtcaatgc gttaccttcc
     5281 attgccgaca ttcccctgta tgacgctgac gtacagcagg aagaaggttt tccagcaacg
     5341 gttgaagctc tggcggaaca gatccgtcag gctgacggtg tggtgatcgt cacgccggaa
     5401 tataactact cggtaccggg tgggctgaaa aatgccatcg actggctttc ccgcctgccg
     5461 gatcaaccgc tggccggtaa accggtgttg attcagacca gctcaatggg cgtgattggc
     5521 ggcgcgcgct gtcagtatca cctgcgccag attctggttt tcctcgatgc aatggtgatg
     5581 aacaagccgg aatttatggg cggcgtgatt cagaacaaag ttgatcggca aaccggagaa
     5641 gtgattgatc agggtacgct ggaccacctg accgggcaat tgaccgcatt tggtgagttt
     5701 attcagcgag ttaagatcta aataaaaaac ccgccagtaa tcatgcatgg cgggttttta
     5761 atgcgctatc gattttaatg agcgtcgata aatacaatct tcaggataaa cagcagcgca
     5821 acgatgatta cgcacgggct aaggtcacgc agacgcccgg taccaatctt catcacgcag
     5881 taggagataa agcccagcgc aataccttcg gtaatcgaaa agctgaacgg catcatcacg
     5941 gcggtaataa acgccggaac agattcagta agatcctgcc agttcacgcg agcaagactt
     6001 gaggtcatca acacgccaac gtagatcaac gcgccagctg cagcgtagcc tggcaccatt
     6061 cccgccagcg gcgacagaaa gataaccagc aggaacagca gaccaacaac cactgccgtc
     6121 agaccggtac gaccgccaac cgatacgccg gaagaggact caatataagc cgtaacggaa
     6181 gaagtaccga taaacgaacc ggtcacggaa gagatactgt cgacatacag cgcttgcttc
     6241 atgcgcggga atttcccctt ctcatccgcc agacctgctt tatcggtcac gccaatcagc
     6301 gtaccggagg agtcaaacaa gttgaccaac atgaaagaga aaatcacccc tgccagcccg
     6361 aggttaaacg acccggctaa atctacatga cccacaactg tcattacgct cggcggcgca
     6421 gaaacgatgc cattgtagtg cacatcaccc agcatccagc ccagcagcgt cgtcaccacg
     6481 atagaaacca gcaccgctgc gtgaatgttg cgcgaggcca gaatagcaat gatgaagaag
     6541 ccgaggatac ccagaagtac gctgtgagaa gtcagattac cgatgctcac cagcgtttcc
     6601 gagttagcga caatcacacc tgcgtttttc agccccatca tgccgataaa caggccgata
     6661 ccgctggtaa tacccacacg cagacttacc ggaatgttag caatcatcca gtaacgaacg
     6721 cggaaaatgg tcaaaagaag cagtccgaca gcgccccaga agattgcgcc cataccgatc
     6781 tgccacggca gccccattgc ctggacaacc acaaaagcga aaaaggcgtt aagccccatc
     6841 gcaggagcca gcgccaccgg aaggtttgca aacaatccca tcataatgct accgaaagca
     6901 gcaatcagac aggttgttac gaagacggca ctggtgtcca tgccagcaac gcccagaatt
     6961 tgtgggttaa caaaaacgat gtaaaccatc gtcaggaagg tggtaaaacc ggcgatcact
     7021 tcggtccgtg ccgtcgtgcc atgttcgcgc agtttaaaca cgcgttccag catcccctgg
     7081 ccagaagcct gggttgtgtg ttgttgactc attatctatt t
//
LOCUS       DAJVUY010000190         7056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.191, whole genome shotgun sequence.
ACCESSION   DAJVUY010000190 DAJVUY010000000
VERSION     DAJVUY010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.191"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            40..246
                     /locus_tag="OQQ72_003720"
                     /pseudo
     CDS             40..246
                     /locus_tag="OQQ72_003720"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            991..2904
                     /locus_tag="OQQ72_003721"
                     /pseudo
     CDS             991..2904
                     /locus_tag="OQQ72_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001306477.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3032..3754)
                     /gene="ubiG"
                     /locus_tag="OQQ72_003722"
     CDS             complement(3032..3754)
                     /gene="ubiG"
                     /locus_tag="OQQ72_003722"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HCS2013297.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPSGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            3901..6528
                     /gene="gyrA"
                     /locus_tag="OQQ72_003723"
     CDS             3901..6528
                     /gene="gyrA"
                     /locus_tag="OQQ72_003723"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HCS2013298.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
     gene            6677..>7056
                     /locus_tag="OQQ72_003724"
     CDS             6677..>7056
                     /locus_tag="OQQ72_003724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2138 family protein"
                     /protein_id="HCS2013299.1"
                     /translation="MSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
                     LVMHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE
                     GSIRRIVYEHDLTLKDKLFSSLLD"
BASE COUNT         1694 a         1742 c         2012 g         1608 t
ORIGIN      
        1 ggctatggag atggtccttc cactgcggcg ggtggcttta tgtatctcgg cttaagtgaa
       61 gttacctttg atattgccga cggaaaaacg ctggttatcg gcaatacaga gaatgacgga
      121 gctgttgact ctattgctgg taccgggttg atcaccaaaa caggttccgg cgatctggta
      181 cttaatgcag ataacaatga ctttactggc gagatgcaga ttgaaaacgg tgaagttacc
      241 ctgggccgca gcaactccct gatgaatgtc ggcgatacgc attgccagga cgatccgcaa
      301 gactgctacg gtctgacgat agggagtatt gataagtacc agaatcaggc agagctaaac
      361 gttggctcca cccaacaaac ctttgtgcac tcattgacgg gctttcagaa tggcacttta
      421 aatatcgatg ctggtggcaa tgttactgtt aatcaaggta gttttgctgg caccatcgaa
      481 ggtgctggtc agctcaccat tgcgcaaaac ggcagctacg tgctgtcggg ggcgcagtcg
      541 atggcgctaa ccggcgatat agtcgttgat gatggtgcgg tgctttcgct ggaaggcgac
      601 gcggcagatc tcgccgctct ccaggacgat ccgcagtcga tcgtgttaaa cggcggtgtg
      661 ctcgatctct ctgatttctc cacctggcag agcggcacat catacaatga tggccttgaa
      721 gtcagtggca gcagcggaac ggttatcggc agtcaggatg tggtagatct tgcaggtggc
      781 gacaatttgc atatccgcgg cgacgggaaa gatggcgtct acgtggtggt cgatgcgagc
      841 gacgggcagg taagtctggc aaacaataat agttatttgg gcacaacaca aatcgcctcc
      901 ggtacgctga tggtgagcga caactcgcag cttggagata cccactataa ccgccaggtt
      961 atctttaccg ataagcaaca agaaagcgtg atggagatta ctgccaatgt cgatactcgc
     1021 tctacgacga ctgagcatgg gcgtgatatt gaaatgcgcg ccgacggtga agtggcagtt
     1081 gatgcggggg tagacacgca gtggggcgca ctgatggctg acagcagcgg gcagcatcag
     1141 gatgagggta gcacatttac taaaacgggg gcgggtacgc tggagctgac cgccagcggt
     1201 acaacgcagt cggcagtacg tgtcgaagaa ggcaccctga aaggcgatgt tgcggatatc
     1261 tttccttatg cttcgtcact gtgggtcggt gatggggcga cgttcgttac tggcgcggat
     1321 caggatattc agtctatcga tgctacttcc agcggcacta tcgatatcag cgatggtacg
     1381 gttttgcgtc tgaccgggca ggatacttcc gtcgccctta atgcctcatt gtttaacggc
     1441 gatgggacgc tggtgaatgc taccgatggc gtgacgttga caggtgagct taataccaac
     1501 cttgaaactg acagcctgac ctatcttgcc gacgtgacgg ttaatggtga tctgaccaat
     1561 acgtccggtg cggttagcct gcaaaatggc gtcgctggcg atacgctaac ggtaaacggt
     1621 gattatactg gcggcggtac gctactgttc gacagcgaat taaacggcga tgactcggta
     1681 agcgatcaat tggtgatgaa cggtaatact gctggcaaca caactgtggt ggttaactcc
     1741 attacaggga ttggtgagcc gacatcgaca ggcattaaag tggttgattt cgcagctgat
     1801 cccacgcagt ttcaaaacaa tgcacagttc agtctggctg gcagtggcta cgtcaacatg
     1861 ggagcgtatg actacacgct agtggaagat aacaacgact ggtatctgcg atcgcaagaa
     1921 gtaacgccgc catcgccacc tgatccagac ccggacccaa cacccgatcc tgacccaaca
     1981 cccgatccaa tccccgctta ccagccggtg ctgaatgcca aagttggcgg ttatctcaat
     2041 aacctgcggg cggcaaatca ggcgtttatg atggagcgac gcgatcacgc tggtggcgat
     2101 ggtcagacgc tgaatttacg tgttatcggc ggacgttatc attacacggc ggcagggcaa
     2161 ctggctcagc aggaagacac ttctacggtg cagcttagcg gcggcttgtt tagcgggcgc
     2221 tggggcacgg atggcgagtg gatgcttggg gcggttggtg gctacagtga taatcagggc
     2281 gacagccgct cgaatatgac cggaactcgc gccgataacc agaaccacgg ttatgccgtt
     2341 gggctgacct caagctggta tcagcacggt aattagaagc agggggcctg gctggatagc
     2401 tggctgcaat acgcgtggtt taacaatgat gtttccgaac atgaagatgg cgtggatcgt
     2461 taccattcgt cggggattat cgcctcgctg gaagccgggt atcagtggtt accggggcgt
     2521 ggtgtggtga ttgaaccgca ggcgcaggtg atttatcagg acgtgcagca ggatgatttt
     2581 accgccgcta accatgcgcg cgtgtcacaa tcgcaggggg atgatattca gacgcggctg
     2641 ggtttacaca gcgaatggcg taccgcggtt ggtgtcacac caacattaga tctgaattat
     2701 tatcacgatc cccatgcgac ggaaattgaa gaagatggca gcactatcag tgacgatgcg
     2761 gtgaagcgac ggggtgaaat aaaagtggga gtcacgggca atatcagtca gcgagtgtcc
     2821 ctgcgcggca gcgtggcgtg gcagaaaggg agtgatgatt ttgcccagac ggcagggttt
     2881 ttgtcgatga cggtgaaatg gtaatcactg tctagtcggc acggttgccg gatgcggcgt
     2941 aaacgcctta tccggcctac ggggagcatt tgtaggcctg ataagacgcg gcaagcgtcg
     3001 catcaggcat tggctcggcc aaacaacaac ctcacttatt ctgcgtgtgc agcatatagt
     3061 tcacatccac gccggggccg agtttaaaag tattagtgag cgggttgtaa tgtagcccag
     3121 ttatatgtcg ctctttaagg cttgtctgat ctacccagcc aagcagttct gccggtttaa
     3181 taaacttctt cacatcatgc gtgcctttgg gcaccatgcg caaaatatat tccgcgccaa
     3241 ccaccgccat cagccatgac ttgccgttgc ggttaagcgt cgagaaaaag acatcgccgc
     3301 ttggtttcac cagttgcgca caggctctga ccactgactg cggatcgggg acgtgctcca
     3361 gcatctccat gcaggtcacc acatcatact gcccggcatg ttttgccgcg tgctcttcca
     3421 cggtttcctg cacataatcc acctgaatgc cgctttccag cgcgtgcagt tttgccacct
     3481 gcaatggctc aaagcccata tccagaccgg tcaccgtcgc gccttcgcgc gccatactct
     3541 cggccagaat gccgccgcca caaccgacat cgagcacctt tttgccaaat aaaccgccag
     3601 cacgctcggc aatatagccc agacgcagcg ggttaatgcg gtgcaacggt ttgaactcac
     3661 cttcaagatc ccaccagcgg gaggcgacgg cttcaaattt agcgatctct tcgtggtcta
     3721 cgttatggtt ttccggcgat ttttcggcat tcattggcac ttctactccg taattggcaa
     3781 gacaaacgag tatatcaggc attggatgtg aataaagcgt ataggtttac ctcaaactgc
     3841 gcggctgtgt tataatttgc gacctttgaa tccgggatac agtagaggga tagcggttag
     3901 atgagcgacc ttgcgagaga aattacaccg gtcaacattg aggaagagct gaagagctcc
     3961 tatctagatt atgcgatgtc ggtcattgtt ggccgtgcgc tgccagatgt ccgagatggc
     4021 ctgaagccgg tacaccgtcg cgtactttac gccatgaacg tactaggcaa tgactggaac
     4081 aaagcctata aaaaatctgc ccgtgtcgtt ggtgacgtaa tcggtaaata ccatccccat
     4141 ggtgactcgg cggtttatga cacgatcgtc cgtatggcgc agccattctc gctgcgttac
     4201 atgctggtag acggtcaggg taacttcggt tccatcgacg gcgactctgc ggcggcaatg
     4261 cgttatacgg aaatccgtct ggcgaaaatt gcccatgaac tgatggccga tctcgaaaaa
     4321 gagacggtcg atttcgttga taactatgac ggcacggaaa aaattcccga cgtcatgcca
     4381 accaaaattc ctaacctgct ggtgaacggt tcttccggta tcgccgtagg tatggcaacc
     4441 aacatcccgc cgcacaacct gacggaagtc atcaacggtt gtctggcgta tatcgatgat
     4501 gaagacatca gcattgaagg gctgatggaa cacatcccgg ggccggactt cccgacggcg
     4561 gcaatcatta acggtcgtcg cggtattgaa gaagcttacc gtaccggtcg cggcaaggtg
     4621 tatatccgcg ctcgcgcaga agtggaagtt gacgccaaaa ccggtcgtga aaccattatc
     4681 gtccacgaaa ttccgtatca ggtaaacaaa gcgcgcctga tcgagaagat tgcggaactg
     4741 gtaaaagaaa aacgcgtgga aggcatcagc gcgctgcgtg acgagtctga caaagacggt
     4801 atgcgcatcg tgattgaagt gaaacgcgat gcggtcggtg aagttgtgct caacaacctc
     4861 tactcccaga cccagttgca ggtttctttc ggtatcaaca tggtggcatt gcaccatggt
     4921 cagccgaaga tcatgaacct gaaagacatc atcgcggcgt ttgttcgtca ccgccgtgaa
     4981 gtggtgaccc gtcgtactat tttcgaactg cgtaaagctc gcgatcgtgc tcatatcctt
     5041 gaagcattag ccgtggcgct ggcgaacatc gacccgatca tcgaactgat ccgtcatgcg
     5101 ccgacgcctg cagaagcgaa aactgcgctg gttgctaatc cgtggcagct gggcaacgtt
     5161 gccgcgatgc tcgaacgtgc tggcgacgat gctgcgcgtc cggaatggct ggagccagag
     5221 ttcggcgtgc gtgatggtct gtactacctg accgaacagc aagctcaggc gattctggat
     5281 ctgcgtttgc agaaactgac cggccttgag cacgaaaaac tgctcgacga atacaaagag
     5341 ctgctggatc agatcgcgga actgttgcgt attcttggta gcgccgatcg tttgatggaa
     5401 gtgatccgtg aagagctgga gctggttcgt gaacagttcg gtgacaaacg tcgtactgaa
     5461 atcaccgcca acagcgcaga catcaacctg gaagatctga tcactcagga agatgtggta
     5521 gtgacgctct ctcaccaggg ctacgttaag tatcagccgc tttctgaata cgaagcgcag
     5581 cgtcgtggcg ggaaaggtaa atctgccgca cgtattaaag aagaagactt tatcgaccga
     5641 ctgctggtgg cgaacactca cgaccatatt ctgtgcttct ccagccgtgg tcgcgtctat
     5701 tcgatgaaag tttatcagtt gccggaagcc actcgtggcg cgcgcggtcg tccgatcgtc
     5761 aacctgctgc cgctggagca ggacgaacgt atcactgcga tcctgccagt gaccgagttt
     5821 gaagaaggcg tgaaagtctt catggcgacc gctaacggta ccgtgaagaa aactgtcctc
     5881 accgagttca accgtctgcg taccgccggt aaagtggcga tcaaactggt tgacggcgat
     5941 gagctgatcg gcgttgacct gaccagcggc gaagacgaag taatgctgtt ctccgctgaa
     6001 ggtaaagtgg tgcgctttaa agagtcttct gtccgtgcga tgggctgcaa caccaccggt
     6061 gttcgcggta ttcgcttagg tgaaggcgat aaagtcgtct ctctgatcgt gcctcgtggc
     6121 gatggcgcaa tcctcaccgc aacacaaaac ggttacggta aacgtaccgc agtggcggaa
     6181 tacccaacca agtcgcgtgc gacgaaaggg gttatctcca tcaaggttac cgaacgtaac
     6241 ggtttagttg ttggcgcggt acaggtagat gactgcgacc agatcatgat gatcaccgat
     6301 gccggtacgc tggtacgtac tcgcgtttca gaaatcagca tcgtgggccg taacacccag
     6361 ggcgtgatcc tcatccgtac tgcggaagat gaaaacgtag tgggtctgca acgtgttgct
     6421 gaaccggttg acgaggaaga tctcgatacc atcgacggca gtgccgcgga aggggacgat
     6481 gaaatcgctc cggaagtgga cgttgacgac gagccagaag aagaataatt ttacttcttc
     6541 atgccaaaag ggagctatct cccttgtttg aattgaaaag tccaggctgc aaagtctggg
     6601 cttttgtcgt attagggcac ggtaaagttt ggctgtgccc gtaaaaaatg gctggctata
     6661 cacaaggaat gtggcaatga gtggtgaaaa aaaggcgaaa ggctggcggt tctatggtct
     6721 tgtaggtttt ggcgcaatag tactgctttc cgctggcgtc tgggcgttgc aatatgctgg
     6781 cagtgggcca gaaaaaacgt tgtcgccgct ggtgatgcac aacaatctgc aaatcgatct
     6841 caatgagccg gacctctttc tcgacagcga ctctctgagc cagcttccca aagatctcct
     6901 caccattccg tttctccacg atgttctgag tgaagatttc gttttctatt atcagaatca
     6961 tgccgatcgt ctgggcattg aaggcagcat tcgtcgcatt gtctatgaac acgatctcac
     7021 gctgaaagat aaactctttt cgtcactctt agatca
//
LOCUS       DAJVUY010000191         7018 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.192, whole genome shotgun sequence.
ACCESSION   DAJVUY010000191 DAJVUY010000000
VERSION     DAJVUY010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.192"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(68..515)
                     /locus_tag="OQQ72_003725"
                     /pseudo
     CDS             complement(68..515)
                     /locus_tag="OQQ72_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            672..1601
                     /gene="metA"
                     /locus_tag="OQQ72_003726"
     CDS             672..1601
                     /gene="metA"
                     /locus_tag="OQQ72_003726"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HCS2013300.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ72_003727"
     CDS             1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ72_003727"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HCS2013301.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHSGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFGDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ72_003728"
                     /pseudo
     CDS             3501..4798
                     /gene="aceA"
                     /locus_tag="OQQ72_003728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
     gene            5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ72_003729"
     CDS             5079..6803
                     /gene="aceK"
                     /locus_tag="OQQ72_003729"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HCS2013302.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIYQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAALVEWLREILPGKTT
                     AELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVI
                     KDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMELLLQE
                     AAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIF
                     PGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSVSPGD
                     VFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRRQRFS
                     VRYGEMLF"
     gene            complement(6772..>7018)
                     /locus_tag="OQQ72_003730"
     CDS             complement(6772..>7018)
                     /locus_tag="OQQ72_003730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013303.1"
                     /translation="HARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILN
                     TLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
BASE COUNT         1710 a         1818 c         1805 g         1685 t
ORIGIN      
        1 gtgaaaaaaa tgccgggtgc gacgctggcg cgtcttctcc agcctgggca ggcacggcag
       61 gggcggctta ttcccccaca tacgccagat tcagcaacgg atacggtttc cccaaatcgt
      121 ccacctcaga gcgtcccgta accttaaaac ccaccttctt atagaaccca accgcctgct
      181 cattttgctc attaacgttg gttgtcagtt ccggtgccat cgagagcgca tgctccacca
      241 gcatccgacc cacgccgcag ccgcacacat caggatcgat aaacagcgca tccatatgct
      301 gcccacttaa caacataaac ccaaccggct gatcccgttc attaaccgcg atccacaacg
      361 gcgcttccgg caggaaggaa cgaactagct agcacctcca gctcggcccg atactctgct
      421 gataaaaaat cgtgtgtggc atcgacagat cgacaccaaa tcgcaacgag ttcctcccct
      481 tcctcatgcc gtgagcggcg aatactaata accattttct ctccttttag tcattcttat
      541 attctaacgt agtcttttcc ttgaaacttt ctcaccttca acatgcaggc tcgacattgg
      601 caaattttct ggttatcttc agctatctgg atgtctaaac gtataagtgt atgtagtgag
      661 gtaatcaggt tatgccgatt cgtgtgccgg acgagctacc cgccgtcaat ttcttgcgtg
      721 aagaaaacgt ctttgtgatg acaacttctc gtgcgtctgg tcaggaaatt cgtccactta
      781 aggttctgat ccttaacctg atgccgaaga agattgaaac tgaaaatcag tttctgcgcc
      841 tgctttcaaa ctcacctttg caggtcgata ttcagctgtt gcgcatcgat tcccgtgaat
      901 cgcgcaacac gcccgcagag catctgaaca acttctactg taactttgaa gatattcagg
      961 aacagaactt tgacggtctg attgtaaccg gtgcgccgct gggcctggtg gagtttaatg
     1021 atgtcgctta ctggccgcag atcaaacagg tgctggagtg gtcgaaagat cacgtcacct
     1081 cgacgctgtt tgtctgctgg gcggtacagg ccgcgctcaa tatcctctac ggcattccta
     1141 agcaaactcg caccgacaaa ctctctggcg tttacgagca tcatattctc catcctcatg
     1201 cgcttctgac gcgtggcttt gatgattcat tcctggcacc acattcgcgc tatgctgact
     1261 ttccggcagc gttgattcgt gattacaccg atctggaaat tctggcagag acggaagaag
     1321 gggatgcata tctgtttgcc agcaaagata agcgcattgc ctttgtgacg ggccatcccg
     1381 aatatgatgc gcaaacgctg gcgcaggaat atttccgcga tgtggaagcc ggactagacc
     1441 cggaagtacc gtataactat ttcccgcaca atgatccgca aaatacaccg cgagcgagct
     1501 ggcgtagtca cggtaatttg ctgtttacca actggctcaa ctattacgtc tatcagatca
     1561 cgccatacga tctacggcac atgaatccaa cgctggatta atcttctgtg atagtcgatc
     1621 gttaagcgat tcagcacctt acctcaggca ccttcgggtg ccttttttat ttccgaaacg
     1681 cacctcagga ggtgaataaa ttttattcac attgttatca ataagttatc aagcattttc
     1741 aattaaaatg gaaattgttt ttgattttgc attttaaatg agtagtctta gttgtgctga
     1801 acgaaaagcg cacaacgatc cttcgttcac agtggggaag ttttcggatc catgacgagg
     1861 agctgcacga tgactgaaca ggcaacaaca accgatgaac tggctttcac aaggccgtat
     1921 ggcgagcagg agaagcaaat tcttactgcc gaagcggtag aatttctgac tgagctggtg
     1981 acgcatttta cgccacaacg aaataaactt ctggcagcgc gcattcagca gcagcaagat
     2041 attgataacg gaacgttgcc tgattttatt tcggaaacag cttccatttg cgatgctgat
     2101 tggaaaattc gcgggattcc tgcggactta gaagaccgcc gcgtagagat aactggcccg
     2161 gtagagcgca agatggtgat caacgcgctc aacgccaatg tgaaagtctt tatggccgat
     2221 ttcgaagatt cactggcccc ggactggaac aaagtgatcg acgggcaaat taacctgcgt
     2281 gatgcagtta acggtaccat cagctatacc aatgaagcag gcaaaattta ccagctcaag
     2341 cccaatccag cggttttgat ttgtcgggta cgcggtctgc acttgccgga aaaacatgtc
     2401 acctggcgtg gtgaggcaat ccccggcagc ctgtttgatt ttgcgctcta tttcttccac
     2461 aactatcagg ctctgttggc aaagggcagt ggtccctatt tctatctgcc gaaaacccag
     2521 tcctggcagg aagcggcctg gtggagcgaa gtcttcagct atgcagaaga tcgctttaat
     2581 ctgccgcgcg gcaccatcaa ggcgacgttg ctgattgaaa cgctgcccgc cgtgttccag
     2641 atggatgaaa tccttcacgc gctgcgtgac catattgttg gtctgaactg cggtcgttgg
     2701 gattacatct tcagctatat caaaacgttg aaaaactatc ccgatcgcgt cctgccagac
     2761 agacaggcag tgacgatgga taaaccattc ctgaatgctt actcacgcct gttgattaaa
     2821 acctgccata aacgcggtgc ttttgcgatg ggcggcatgg cggcgtttat tccgagcaaa
     2881 gatgaagagc acaataacca ggtgctcaac aaagtaaaag cggataaatc gctggaagcc
     2941 aataacggtc acgatggcac atggatcgct cactcaggcc ttgcggatac ggcaatggcg
     3001 gtattcaacg acattctcgg ctcccgtaaa aatcagcttg aagtgatgcg cgaacaagac
     3061 gcgccgatta ctgccgatca gctactggca ccttgtgacg gtgaacgcac cgaagaaggt
     3121 atgcgcgcaa atattcgcgt agccgtgcag tacatcgaag cgtggatctc tggcaacggc
     3181 tgtgtgccga tttatggcct gatggaagat gcggcgacgg ctgaaatttc ccgtacctca
     3241 atctggcagt ggatccatca tcaaaaaatg ttgagcaatg gcaaaccggt aactaaagcc
     3301 ttgttccgcc agatgctggg cgaagagatg aaagtcattg ccagcgaact gggcgaagaa
     3361 cgtttctccc aggggcgttt tggcgatgcc gcacgcttga tggaacagat caccacttcc
     3421 gatgagttaa ttgatttcct gaccctgcca ggctactgcc tgttagcgta aaccaccaca
     3481 taactatgga gcatctgcac atgaaaaccc gtacacaaca aattgaagaa ttacagaaag
     3541 agtggactca accgcgttgg gaaggcatta ctcgcccata cagcgcggaa gatgtggtga
     3601 aattacgcga ttcagtcaat cctgaatgca ccctggcgca actgggcgcg gcgagaatgt
     3661 ggcgtctgct gcatggcgag tcgaaaaaag ctacatcaac agcctcggtg cactgactgg
     3721 cggtcaggcg ctgcaacagg cgaaagcggg tattgaagca gtctatctgt cgggatggca
     3781 ggtagcggcg gacgctaacc tggcggccag catgtatccg gatcagtcgc tctatccggc
     3841 aaactcggtg ccagctgtgg tggagcggat caacaatact ttccgccgtg cggatcagat
     3901 ccaatggtcc gcgggcattg agccgggcga tccgcgctat gtcgattact tcctgccgat
     3961 cgttgccgat gcggaagccg gttttggcgg tgtcctgaat gcctttgaac tgatgaaagc
     4021 gatgattgaa gccggtgcag cggcagttca cttcgaagat cagctggcgt cagtgaagaa
     4081 atgcggtcac atgggcggca aagttttagt gccaactcaa gaagctattc agaaactggt
     4141 cgcggcgcgt ctggcagctg acgtgacggg cgttccaacc ctactggttg ctcgtaccga
     4201 tgccgcggat ctgatcacct ccgattgcga cccgtatgac agcgaattta ttaccggcga
     4261 gcgtaccagt gaaggcttct tccgtactca tgcgggcatt gagcaagcga tcagccgtgg
     4321 cctggcgtat gcgccatatg ctgacctggt ctggtgtgaa acctccacgc cggatctgga
     4381 actggcgcgt cgctttgcac aagctatcca cgcgaaatat ccgggcaaac tgctggctta
     4441 taactgctcg ccgtcgttca actggcagaa aaacctcgac gacaaaacta ttgccagctt
     4501 ccagcagcag ctgtcggata tgggctacaa gttccagttc atcaccctgg caggtatcca
     4561 cagcatgtgg ttcaacatgt ttgacctggc aaacgcctat gaccagggcg agggtatgaa
     4621 gcactacgtt gagaaagtgc agcagccgga atttgccgcc gcgaaagatg gctatacctt
     4681 cgtatctcac cagcaggaag tgggtacagg ttacttcgat aaagtgacga ctattattca
     4741 gggcggcacg tcttcagtca ccgcgctgac cggctccact gaagaatcgc agttctaagc
     4801 aacaacaacc gttgctgact gtaggccgga taaggcgttc acgccgcatc cggcaatcgg
     4861 tgcacgatgc ctgatgcgac gcttgcgcgt cttatcatgc ctacagccgt tgccgaacgt
     4921 aggccggata aggcatttac gccgcatccg gcaatcggtg cacgatgcct gatgcgacgc
     4981 ttgcgcgtct tatcatgcct acaaccgttg ccgaacgtag gctggataag gcgtttacgc
     5041 cgcatccggc aattctctgc tcctgatgag ggcgctaaat gccgcgtggc ctggaattac
     5101 tgattgctca aaccattttg caaggcttcg acgctcagta tggtcgattc ctcgaagtga
     5161 cttccggggc gcagcagcgt ttcgaacagg ccgactggca tgctgtccag ctggcgatga
     5221 aaaaccgtat ccatctttac gatcatcacg ttggtctggt cgtggagcaa ctgcgctgca
     5281 ttactaacgg ccaaagtacg gacgcggcat ttttactgcg cgttaaagag cattacacgc
     5341 ggctgttgcc ggattacccg cgcttcgaga ttgcggagag cttttttaac tccgtgtact
     5401 gtcggttatt tgaccaccgc tcgcttactc ccgagcggct ttttatcttt agctctcagc
     5461 cagagcgccg ctttcgtacc attccccgcc cgctggcgaa agactttcac cccgatcacg
     5521 gctgggaatc tctactgatg cgcgttatca gcgacctgcc gctgcgcctg cgctggcaga
     5581 ataaaagccg tgacattcat tacatcattc gccatctgac ggaaacgctg gggacagaca
     5641 acctcgcgga aagtcattta caggtggcga acgaactgtt ttaccgcaat aaagccgcct
     5701 ggctggtggg caaactgatc acgccttccg gcacgttgcc cttcttactg ccgatctacc
     5761 agacggacga cggcgagtta tttattgata cctgcctgac gacgaccgcc gaagcgagca
     5821 ttgtttttgg ctttgcgcgt tcttatttta tggtttatgc agcgctggtc gagtggctac
     5881 gggaaattct gccaggtaaa accactgctg aattgtatat ggctatcggc tgccagaagc
     5941 acgccaaaac cgaaagctac cgcgaatatc tcgtttatct acagggctgt aatgagcagt
     6001 tcattgaagc gccgggtatt cgtggaatgg tgatgttggt gtttacgctg ccgggctttg
     6061 atcgggtatt caaagtcatc aaagacaagt tcgcgccgca gaaagagatg tctgccgctc
     6121 acgttcgtgc ctgctatcaa ctggtgaaag agcacgaccg tgtgggccga atggcggaca
     6181 cccaggagtt tgaaaacttt gtgctggaga agcggcatat ttccccggca ttaatggaat
     6241 tactgctcca ggaagcagcg gaaaaaatca ccgatcttgg tgagcagatt gtaattcgcc
     6301 atctctatat cgagcggcgg atggtgccgc tcaatatctg gctggaacaa gtggaaggtc
     6361 agcagttgcg cgacgccatt gaagaatacg gtaacgctat tcgccagctt gccgctgcta
     6421 acatttttcc tggcgacatg ctgtttaaaa acttcggtgt cacccgtcac gggcgtgtgg
     6481 ttttttatga ttacgatgaa atttgctaca tgacggaagt gaatttccgc gacatcccgc
     6541 cgccgcgcta tccggaagac gaacttgcca gcgaaccgtg gtacagcgtc tcgccgggcg
     6601 atgttttccc ggaagagttt cgccactggc tatgcgccga cccgcgtatt ggtccgctgt
     6661 ttgaagagat gcacgccgac ctgttccgcg ctgattactg gcgcgcacta caaaaccgca
     6721 tacgtgaagg gcatgtggaa gatgtttatg cgtatcggcg caggcaaaga tttagcgtac
     6781 ggtatgggga gatgcttttt tgagtaaagc ttccatataa tttttctccg caatgtatcg
     6841 agggttatcc gtaaagccaa agctttcagc catcttattt aatgtattaa ggattaattc
     6901 agcaataacc cggtgaccaa attcaaaagc caactcaaag gcagagtatt tttgtggcgc
     6961 tttgtgttgc caaaaatcca taatatcttc agcggtaaat ccaaacaggc gtgcatgg
//
LOCUS       DAJVUY010000192         6848 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.193, whole genome shotgun sequence.
ACCESSION   DAJVUY010000192 DAJVUY010000000
VERSION     DAJVUY010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6848
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.193"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..296)
                     /locus_tag="OQQ72_003731"
     CDS             complement(<1..296)
                     /locus_tag="OQQ72_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS2013304.1"
                     /translation="MISDAQKAANAAGAIATGLLSLIIPVPLTTVQWANKHYYLPKES
                     SYTPGRWETLPFQVGIMNCMGNDLIRTVNLIKSARVGYTKMLLGVEAYFIEHKSR"
     gene            complement(268..816)
                     /locus_tag="OQQ72_003732"
     CDS             complement(268..816)
                     /locus_tag="OQQ72_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000867575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HCS2013305.1"
                     /translation="MKVNKKRLAEIFNVDPRTIERWQSQGLPCVSKGSKGIESVFDTA
                     MAIQWYAQRETDIENEKLRKELADLRAAAESDLQPGTIDYERYRLTKAQADAQELKNA
                     REDGVVLETELFTFILQRVAQEISGILVRVPLTLQRKYPDISPSHLDVVKTEIAKASN
                     VAAKAGENVGGWIDDFRRTEGS"
     gene            1227..2294
                     /locus_tag="OQQ72_003733"
     CDS             1227..2294
                     /locus_tag="OQQ72_003733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001383880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta family protein"
                     /protein_id="HCS2013306.1"
                     /translation="MSQHQYYPQLKWKPAEYESLMLLDQTTLSGFTPIITIPDIDWDY
                     ENECYKKSLSSYLSDFGINLAASWKANRPVLLDVKYLDKHGSSRHHPLDMCIQDARVN
                     GKEIIPVVSPAYSTNYIHAVQRNLINGLAISITPQTWHQFTSLVNHLNIHPSLIDVII
                     DFGDIQNATDSLKQQALSMVNTLSGQAPWRNLILSSTAYPASQAGIPQHQVHHIPRHE
                     YDLWMYVVQNFSNGRTPSFSDYPTASSTITSVDPRFMSQYVSVRYSNDTSWIFVKGTA
                     VKGNGWGQTKNLCTTLVSSPEYQVFGSKFSWGDDYIYQRSLGANKSGGSKEWRKVAHT
                     HHITLVVRQLYWLAQTQPAKP"
     gene            complement(2236..2856)
                     /locus_tag="OQQ72_003734"
     CDS             complement(2236..2856)
                     /locus_tag="OQQ72_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sce7726 family protein"
                     /protein_id="HCS2013307.1"
                     /translation="MKDQDVRFAVHHKLLKESHLDPDCLVVDEFSISLGASRADIAVI
                     NGVIHGYELKSEYDSLERLPLQIKHYSSVMDKVTLVVAEKHLEGALKLIPGWWGVKTV
                     SVGPKGAILIKHMRGEKLNRNHDTLMLAQLLWKDECIDVLERWGYSKGIKSKPRFELW
                     NIIAENIPIANLRPEVRTALKKRVGWKVKAWQAESAPTNKAVSRLT"
     gene            complement(3273..3731)
                     /locus_tag="OQQ72_003735"
     CDS             complement(3273..3731)
                     /locus_tag="OQQ72_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS2013308.1"
                     /translation="MSRVAAIIYTLVICTIVCLSWAVNHYRDNAITYKAQRDKNAREL
                     KLANVVITDMQMRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKS
                     TTGASSMGDGESPRLTADAELNYYRLRSGIDKITAQVNYLQEYIRTQCLK"
     gene            complement(3728..4261)
                     /locus_tag="OQQ72_003736"
     CDS             complement(3728..4261)
                     /locus_tag="OQQ72_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706619.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS2013309.1"
                     /translation="MSAKIKYGLSAAVLALIAAGASAPQILDQFLDEKEGNHTTAYRD
                     GSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VIRRDQESALACWGIDQ"
     gene            complement(4317..4631)
                     /locus_tag="OQQ72_003737"
     CDS             complement(4317..4631)
                     /locus_tag="OQQ72_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000192453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS2013310.1"
                     /translation="MTQNYELIVKGIRNFENKVTVTLALRDKKRFDGEIFDLDISLDR
                     VEGAALEFYEAAARRSIRQVFMDVAAGLCEGDELLPETRPCSEARYTIKINSSDNSIT
                     GC"
     gene            complement(4636..4851)
                     /locus_tag="OQQ72_003738"
     CDS             complement(4636..4851)
                     /locus_tag="OQQ72_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS2013311.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            complement(5002..>6848)
                     /locus_tag="OQQ72_003739"
     CDS             complement(5002..>6848)
                     /locus_tag="OQQ72_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS2013312.1"
                     /translation="HYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIA
                     AEGDVVVSGATEPEWYYVIVLAGQSNAMAYGEGLPLPDSYDAPHPRIKQLARRNTVTP
                     GGEVCVFNDIIPADHCLHDVQDMSTINHPRADLSKGQYGCVGQGLHIAKKLLPYIPNN
                     AGILLVPCCRGGSAFTQGTEGTFSESTGASQDSARWGVGKPLYQDLLFRTKAALQKNP
                     KNVLLAICWMQGEFDMTNASYAQQPAAFLAMVQQFRADLAGLAAQCHGGSPASVPWIC
                     GDTTYAWKQEHGTQYEVVYGAYKGKESQQIYFVPFMTDGSGVNTPTNNPSEDPDIAGS
                     GYYGSASRTNKNWVSSNRPTHFSSWARRGIIPDRMATAILNVAGRTLAFISGKAPEIK
                     PSPGGDTPSGPSDGDTSVRTVSLLPTAGEAAAQGWTITGGSVALEDGVFKVTKQSNKP
                     WSLMHPVDDAVSLLTRGGRLSCKFRLSGALTNNQFGLGIYLYTDVALPDVVAMTGTGN
                     PFLMSFFTQTTDGKLNLMHHRKAGNTKLGEFGNYSNDWQTLELVFTAGSATVTPKLNG
                     VAGPAFQVIKDSLTLGLNALTLTDITKNAAYGVEIESLVLEINAPASS"
BASE COUNT         1762 a         1778 c         1482 g         1826 t
ORIGIN      
        1 cgtgatttat gctcaataaa ataagcctcc actcccagca acatctttgt ataaccaaca
       61 cgggcagatt taatcaggtt aacagtgcga atcaaatcgt tgcccataca gttcatgatg
      121 ccaacctgaa acggcagtgt ttcccaccgc cccggggtat aagacgactc tttaggaagg
      181 taataatgtt tattggccca ctgaactgtc gtcagtggaa caggaataat gagagataaa
      241 agccctgtag ctatcgcacc ggctgcatta gctgccttct gtgcgtctga aatcatcgat
      301 ccacccgccc acgttttcac cggccttagc tgcaacattg gaggctttcg cgatttcagt
      361 tttcaccaca tcaaggtgtg atggtgaaat gtccggatat ttacgctgta atgtcaacgg
      421 cacacgcaca agtatccccg aaatctcctg tgccacacgt tgcagaatga aggtaaacag
      481 ttcagtttcc agcaccactc cgtcttcacg ggcatttttc agttcctgcg catctgcctg
      541 cgcttttgtg agccggtagc gttcatagtc aatggtgccg ggttgtaaat ctgactccgc
      601 tgccgcacgc aaatcggcca gttctttgcg gagcttttcg ttttcgatat cagtttccct
      661 ctgcgcatac cactgaattg ccatggcagt atcaaataca gattcaatgc ccttactgcc
      721 tttggagacg caagggagcc cctgagactg ccagcgttca atcgtccgcg ggtccacgtt
      781 aaaaatttcg gcaagcctct ttttattaac cttcatagaa caacccatta tcaaatacaa
      841 ggcccgacat gaaaacgcca gaaaaaggca ttttcggaca ctttcatgtc ggacatttat
      901 gaatgcaata ttaaaaaaaa caaaaagtta tattcgagaa gtaccgacac gatttaccct
      961 gaaaaatttt cataaatagt gaaaaaccgc gaggtcgccg ccccgtaacg atctggatca
     1021 ccggaaagga cccgccaacg actttcgcgt gcaggcatta aaaattttgc agttccatgc
     1081 ctagttgaaa cctcgatttc tataacatcc aattttgtaa atttagatat agctcaactt
     1141 ttcccaatgt tttcaagtgt ataaaaacaa ttggcgttac gccataacac tatacttagg
     1201 ataagtaaag attttaagga gttttaatga gtcaacatca atattatcca cagctgaaat
     1261 ggaagcctgc tgaatatgaa tctctgatgc ttttagatca aactacgctc tctggtttta
     1321 ctccgatcat taccattcca gacatagact gggattatga aaacgaatgc tacaagaaga
     1381 gtttgagttc ttacttatct gacttcggta ttaaccttgc ggcatcctgg aaagccaatc
     1441 gtcctgtttt gctggatgtt aaatatttag ataaacatgg ttcgagccgc catcatcctc
     1501 tagatatgtg tatccaagat gctagagtaa atggtaagga aattatccct gttgtttctc
     1561 ccgcatattc aacaaactat atacatgctg ttcaacgcaa cttaatcaat gggctcgcta
     1621 tatctatcac cccccagaca tggcaccaat tcacaagtct ggttaaccac ttaaatattc
     1681 atcctagttt aattgatgta atcattgatt ttggagatat tcaaaacgca actgatagtt
     1741 taaaacaaca agcattaagc atggtcaaca cattatcagg ccaagctccg tggagaaact
     1801 tgattttatc ttcaaccgca tacccggcat cacaggcagg gataccgcaa catcaagttc
     1861 atcatattcc gcgccatgaa tacgatcttt ggatgtacgt agtacagaat tttagcaatg
     1921 gaagaacgcc aagttttagt gattatccca ccgctagctc taccattacg agcgtagacc
     1981 cacgcttcat gtctcagtat gtctcagtga gatattcgaa cgatacctca tggatctttg
     2041 taaaaggtac cgcagttaaa ggaaatggat ggggccaaac taaaaactta tgtactaccc
     2101 ttgttagttc gccagagtat caagtctttg gctccaaatt tagttggggg gatgattaca
     2161 tttaccaaag atcattaggc gctaacaaat ctggcggctc taaagaatgg cgtaaagttg
     2221 cacatacgca ccatattacg ttagtcgtga gacagcttta ttggttggcg cagactcagc
     2281 ctgccaagcc ttaactttcc agcctacgcg tttctttaag gctgttctga cttcaggcct
     2341 gagattcgct attggaatat tttccgcaat aatattccat aactcaaatc ggggcttgct
     2401 tttgattcct ttggaatagc cccatcgttc aagtacgtcg atacattcat ctttccaaag
     2461 caattgagcg agcatcaatg tgtcatggtt tcgattaagc ttttctccac gcatgtgctt
     2521 tataagaatg gcgccttttg gcccaacaga aaccgtttta acgccccacc aacctgggat
     2581 taactttaat gctccctcaa ggtgtttctc agctacgaca agagtaacct tgtccattac
     2641 agaagaataa tgcttgattt gaagaggcaa acgctccaaa gagtcatatt cacttttgag
     2701 ctcgtacccg tgtataacac catttattac agcaatgtct gctctactgg cgccaaggga
     2761 tatggaaaat tcatcgacca caaggcagtc tggatctaaa tgcgattctt tcaaaagctt
     2821 atgatgcacc gcgaacctaa catcttgatc tttcatgact tctccttact ccctccgtta
     2881 ttgaattata gcgcactgca ttttactgca tttgagagat ttgaccactt caatcacaaa
     2941 atgcttatct gcagcaacaa gattcatagc catacgacta tggtgattac cttttgtctg
     3001 gaaaactgac cattccacga agatcagata ggtctataga atcttggttt gtcatagcgt
     3061 tcgtcttact ttgagatgaa cctttgctgc ataggagatc agcccgtcaa ggctcaccag
     3121 cactaactga ctactcaaag gctcattcca aagggtttgg ttcgacgtgg ttgagtgcgc
     3181 tgcggtgcgc ggtgaaatac ctgtacaaaa atgccccgca tctgcgaggc attttcctga
     3241 aagtcacgta ttaaatttca gtgaaattaa aattatttta agcactgcgt cctgatgtac
     3301 tcctgcaggt agttgacctg agcggttatc ttgtcgattc cacttcggag acggtaataa
     3361 ttgagttcag catctgctgt aagtcttggg ctttctccat cgcccatgct gctggctccg
     3421 gtcgttgact ttgcacaggt ggcggcgact tgcaggcgct tacgcccagc agaaacatca
     3481 gcacgaagac tttcgatagt cgcgttagca tcagcaagct cctttgtgta tctggcgtcg
     3541 agttctgcta catcacgctg acgcatctgc atgtcagtaa ttaccacgtt cgccagcttc
     3601 agttctctgg catttttgtc gcgctgggct ttgtaggtaa tggcgttatc gcggtaatga
     3661 ttaacagccc atgacaggca gacgatggtg cagataacca gagtataaat aatcgctgcg
     3721 actctgctca ctgatctatc ccccaacagg ctaatgcgct ttcctggtca cgacgaataa
     3781 cctgtccata gcagttattt gaacgtatgc ggcaatcgcg cccaccatct tttatccacc
     3841 agcgaatcgc ctcgcatgcg cccttacgat caccggcatt cagccgctta taaaacgtcg
     3901 acgggaaaca cttaccgggg ccaatgttat agggacagaa tgacgctata cccgctttct
     3961 gtggttcggt cagtggtact ttaatattgc gctccaccca tgccagcgcc ttatcacgtt
     4021 caatagcgtt aacctggtcg catttttcct tcgacagctt cattcccggt atgacgggct
     4081 taccatccac cattgtggca ccacgacaga tggtccatat accggaacca tcgcggtatg
     4141 ccgtagtgtg gttaccctct ttttcatcca gaaactggtc aagtatttga ggagcagacg
     4201 cgcctgcagc aatcagcgcc agaacagcag ctgacaggcc gtatttgatt tttgcgctca
     4261 tggatattta tcaggatgct accaatgaaa gatactggaa agccaactgc aaaaagctaa
     4321 caacccgtaa tcgagttatc agaactgtta atttttatgg tataccgcgc ctctgaacag
     4381 gggcgcgttt ctggcaacag ctcgtcccct tcacataacc cggcagcaac atccatgaag
     4441 acctgtctga tgctccttct ggctgctgcc tcataaaact ccagcgcggc accttcaaca
     4501 cggtccagcg agatgtccag gtcaaaaatt tcaccgtcaa agcgtttttt gtcccgtaac
     4561 gctaaagtta ccgtaacttt attctcaaaa ttgcggatcc ctttcacaat cagttcatag
     4621 ttttgagtca ttgaattact ctccccgtgc agccttacga cggtcctctc tgattttgaa
     4681 atacaggtta gtcagatatg tcagcagccc aaacagcaga ctccccagca cgcctattgc
     4741 cgcccactga gacggggaaa ccctgtccag caactgcagg aaccagtagc ccgttcccac
     4801 cgctgacgtg gtgtatgaca cacctgttgt gattttttcc atctggtaca taccccgtct
     4861 cccgttatcc ggaagctgac aacaataaaa aaagccacca gttaagtact gatggctctg
     4921 ataactcatg caggcatctc agacgaccca ctgacactac cggtgagttt aacgatacct
     4981 tccatttgac tggctcactt tttatgatga tgctggtgca tttatctcca gcaccagact
     5041 ttctatctca acgccatacg ctgcattttt ggtaatatcc gtcagcgtca gcgcattcag
     5101 ccccagtgtc agactgtctt ttatgacctg gaatgccggg ccagccactc cattcagttt
     5161 cggagtaacc gtggcactgc cggcggtgaa caccagctcc agcgtctgcc agtcgttact
     5221 gtaattcccg aactcgccca actttgtgtt tcctgctttc ctgtgatgca tcagattcag
     5281 tttgccgtct gtggtctggg tgaagaacga catcaggaac gggttaccag tcccggtcat
     5341 cgccacgacg tcaggtaacg ctacatcggt atacagataa attcccagac cgaactggtt
     5401 gttggtcagt gcgcctgaca gtcgaaactt acagctcagt ctgccacccc gtgtcagcag
     5461 ggagactgcg tcatccaccg gatgcatcag ggaccaaggt ttattgctct gcttggtaac
     5521 cttaaacaca ccatcttcca gcgcaacact gccgccagtg atggtccagc cctgcgcagc
     5581 agcctctccg gctgtcggca gcagggagac tgtacgaacg gatgtgtcac catcagacgg
     5641 ccccgatgga gtgtcgccgc cgggcgaggg tttgatttcc ggtgccttac cactaatgaa
     5701 ggctaaggtg cgaccggcta cgttcagaat agcagttgcc atacgatcgg gaataatgcc
     5761 acgacgcgcc catgagctga aatgcgtcgg gcgatttgat gatacccagt ttttgttcgt
     5821 tcgggatgcc gaaccgtaat aaccagaccc ggcaatatca ggatcttctg acgggttgtt
     5881 tgtcggtgta ttaactccgc taccatcggt cataaaggga acaaaataaa tctgctggga
     5941 ttctttacct ttatatgcac catataccac ttcatattgc gtaccgtgtt cttgtttcca
     6001 cgcgtatgtc gtgtcgccac aaatccaggg gactgatgcc ggacttccac cgtgacactg
     6061 cgccgccagc ccggcaaggt cagcacggaa ctgctgtacc attgcaagaa atgctgctgg
     6121 ctgctgggcg taactggcat tcgtcatatc gaattccccc tgcatccagc atatcgccag
     6181 caaaacgttt ttcggatttt tctgcaatgc tgccttcgtg cggaaaagca gatcctgata
     6241 taacggctta cccactcccc agcgagccga atcctgactg gcccccgtgg actcgctgaa
     6301 tgtcccctcc gtgccctggg tgaatgccga accaccacga cagcatggta ccagcaggat
     6361 ccccgcgtta ttagggatat acggaagcag ttttttggca atatgtaagc cctgtccgac
     6421 acagccgtac tgccctttgc tcaggtcagc ccggggatga ttaatcgtac tcatatcctg
     6481 aacatcatgc agacaatggt cagcaggaat gatgtcgtta aatacgcata cttcaccacc
     6541 gggagtcact gtgttacgac gggccagttg cttaatgcgc ggatggggcg catcgtatga
     6601 atccggaagc ggaagccctt caccgtaagc catggcattg gattgcccgg ccagtacgat
     6661 gacgtagtac cactccggct cagttgcacc actgacgacc acatcacctt ctgctgcaat
     6721 cgcctgcatc agggtataag gggttatggc caccggacta ccaaacggct gccagccctc
     6781 tttcagttta tgtgtcagct tttccgcaag atctgacggc gacgccgccc tgacaacatc
     6841 atagtgtt
//
LOCUS       DAJVUY010000193         6802 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.194, whole genome shotgun sequence.
ACCESSION   DAJVUY010000193 DAJVUY010000000
VERSION     DAJVUY010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6802
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.194"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            188..2104
                     /gene="dnaK"
                     /locus_tag="OQQ72_003740"
     CDS             188..2104
                     /gene="dnaK"
                     /locus_tag="OQQ72_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCS2013313.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2193..3323
                     /gene="dnaJ"
                     /locus_tag="OQQ72_003741"
     CDS             2193..3323
                     /gene="dnaJ"
                     /locus_tag="OQQ72_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HCS2013314.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3427..3579)
                     /gene="mokC"
                     /locus_tag="OQQ72_003742"
     CDS             complement(3427..3579)
                     /gene="mokC"
                     /locus_tag="OQQ72_003742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HCS2013315.1"
                     /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF
                     TAYESE"
     gene            4165..5331
                     /gene="nhaA"
                     /locus_tag="OQQ72_003743"
     CDS             4165..5331
                     /gene="nhaA"
                     /locus_tag="OQQ72_003743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HCS2013316.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5397..6296
                     /gene="nhaR"
                     /locus_tag="OQQ72_003744"
     CDS             5397..6296
                     /gene="nhaR"
                     /locus_tag="OQQ72_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HCS2013317.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6334..>6802)
                     /locus_tag="OQQ72_003745"
     CDS             complement(6334..>6802)
                     /locus_tag="OQQ72_003745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial family protein"
                     /protein_id="HCS2013318.1"
                     /translation="RFNYNLNTILLVNLMTCGFEDQSIDTGRFVLSRINNENYQFHHI
                     RFDCIQGEQGELVFEPSDVEYYFEPVTIQESGTSILKNELENSEDGAGQVGFQLSNDG
                     TNEIQYGKSNYYSFQHPHEGSNQIPLFIRPRTYGNNVSSGQIMSRVKIVVMYN"
BASE COUNT         1738 a         1601 c         1757 g         1706 t
ORIGIN      
        1 ttctgcgcaa aagcacaaaa aatttttgca tctccccctt gatgacgtgg gttacgaccc
       61 catttagtag tcaaccgcag tgagtgagtc tgcaaaaaaa tgaaattggg cagttgaaac
      121 cagacatttc gcccctatta cagactcaca accacatgat gaccgaatat atagtggaga
      181 cgtttagatg ggtaaaataa ttggtatcga cctgggtact accaactctt gtgtagcgat
      241 tatggatggc accactcctc gcgtgctgga gaacgccgaa ggcgatcgca ccacgccttc
      301 tattattgcc tatacccagg atggtgaaac tctggttggt cagccggcta aacgtcaggc
      361 agtgacgaac ccgcaaaaca ccctgtttgc gattaaacgc ctgattggcc gccgcttcca
      421 ggacgaagaa gtacagcgtg atgtttccat catgccgttc aaaattattg ctgctgataa
      481 cggcgacgca tgggtcgaag ttaaaggcca gaaaatggca ccgccgcaga tttctgctga
      541 agtgctgaaa aaaatgaaga aaaccgctga agattacttg ggtgaaccgg taactgaagc
      601 tgttatcacc gtaccggcat actttaacga tgctcagcgt caggcaacca aagacgcagg
      661 ccgtatcgct ggtctggaag taaaacgtat catcaacgaa ccgaccgcag ctgcgctggc
      721 ttacggtctg gacaaaggta ctggcaaccg tactatcgcg gtttatgacc tggggggtgg
      781 tactttcgat atttctatta tcgaaatcga cgaagttgat ggcgaaaaaa ccttcgaagt
      841 tctggctacc aacggtgata cccacctggg tggtgaagac ttcgacagcc gtctgatcaa
      901 ctacctggtt gaagaattca agaaagatca gggcattgac ctgcgcaacg atccgctggc
      961 aatgcagcgc ctgaaagaag cggcagaaaa agcgaaaatc gaactgtctt ccgctcagca
     1021 gaccgacgtt aacctgccgt acatcactgc agatgcgacc ggtccgaaac acatgaacat
     1081 caaagtgact cgtgcgaaac tggaaagctt ggttgaagat ctggtaaacc gttccattga
     1141 gccgctgaaa gttgcactgc aggacgctgg cctgtccgta tctgatatcg acgacgttat
     1201 cctcgttggt ggtcagactc gtatgccaat ggttcagaag aaagttgctg agttctttgg
     1261 taaagagccg cgtaaagacg ttaacccgga cgaagctgta gcaatcggtg ctgctgttca
     1321 gggtggtgtt ctgactggtg acgtgaaaga cgtactgctg ctggacgtta ccccgctgtc
     1381 tctgggtatc gaaaccatgg gcggtgtgat gacgacgctg atcgcgaaaa acaccactat
     1441 cccgaccaag cacagccagg tgttctctac cgctgaagac aaccagtctg cggtaaccat
     1501 ccatgtgctg cagggtgaac gtaaacgtgc ggctgataac aaatctctgg gtcagttcaa
     1561 cctggatggt atcaacccgg caccgcgcgg catgccgcag atcgaagtta ccttcgatat
     1621 cgatgctgac ggtatcctgc acgtttccgc gaaagataaa aacagcggta aagagcagaa
     1681 gatcaccatc aaggcttctt ctggtctgaa cgaagatgaa atccagaaaa tggtacgcga
     1741 cgcagaagct aacgccgaag ctgaccgtaa gtttgaagag ctggtacaga ctcgcaacca
     1801 gggcgaccat ctgctgcaca gcacccgtaa gcaggttgaa gaagcaggcg acaaactgcc
     1861 ggctgacgac aaaactgcta tcgagtctgc actgactgca ctggaaactg ctctgaaagg
     1921 tgaagacaaa gccgctatcg aagcgaaaat gcaggagctg gcacaggttt cccagaaact
     1981 gatggaaatc gcccagcagc aacatgccca gcagcagact gccggtgctg atgcttctgc
     2041 aaacaacgcg aaagatgacg atgttgtcga cgctgaattt gaagaagtca aagacaaaaa
     2101 ataatcgccc tataaacggg taattatact gacacgggcg aaggggaatt tcctctccgc
     2161 ccgtgcattc atctaggggc aatttaaaaa agatggctaa gcaagattat tacgagattt
     2221 taggcgtttc caaaacagcg gaagagcgtg aaatcaaaaa ggcctacaaa cgcctggcca
     2281 tgaaatacca cccggaccgt aaccagggtg acaaagaggc cgaggcgaaa tttaaagaga
     2341 tcaaggaagc ttatgaagtt ctgaccgact cgcaaaaacg tgcggcatac gatcagtatg
     2401 gtcatgctgc gtttgagcaa ggcggcatgg gcggcggcgg ttttggcggc ggcgcagact
     2461 tcagcgatat ttttggtgac gttttcggcg atatttttgg cggcggacgt ggtcgtcaac
     2521 gtgcggcgcg cggtgctgat ttacgctata acatggagct caccctcgaa gaagctgtac
     2581 gtggcgtgac caaagagatc cgcattccga ctctggaaga gtgtgacgtt tgccacggta
     2641 gcggtgcaaa accaggtaca cagccgcaga cctgtccgac ctgtcatggt tctggtcagg
     2701 tgcagatgcg tcagggtttc tttgccgtgc agcagacctg tccacactgt cagggccgcg
     2761 gtacgctgat caaagatccg tgcaacaaat gtcatggtca tggtcgtgtt gagcgcagca
     2821 aaacgctgtc cgttaaaatc ccggcagggg tggacactgg agaccgcatc cgtcttgcgg
     2881 gcgaaggtga agcgggccag catggcgcac cggcaggcga tctgtacgtt caggttcagg
     2941 ttaaacagca cccgattttc gagcgtgaag gcaacaacct gtattgcgaa gtcccgatca
     3001 acttcgctat ggcggcgctg ggtggcgaaa tcgaagtacc gacccttgat ggtcgcgtca
     3061 aactgaaagt gcctggcgaa acccagaccg gtaagctttt ccgtatgcgc ggtaaaggcg
     3121 tcaagtctgt ccgcggtggc gcacagggtg atttgctgtg ccgcgttgtc gtcgaaacac
     3181 cggtaggcct gaacgagaag cagaaacagc tgctgcaaga gctgcaagaa agcttcggtg
     3241 gcccaaccgg cgagcacaac agcccgcgct caaagagctt ctttgatggt gtgaagaagt
     3301 tttttgacga cctgacccgc taacctcccc aaaagcctgc ccgtgggcag gcctgggtaa
     3361 aaatagggtg cgttgaagat atgcgagcac ctgtaaagtg gcggggatca ctccccgccg
     3421 ttgctcttac tcggattcgt aagccgtgaa aacagcaacc tccgtctggc cagttcggat
     3481 gtgaacctca cagaggtctt ttctcgttac cagcgccgcc actacggcgg tgatacagat
     3541 gacgatcagg gcgacaatca tcgccttatg ctgcttcatt gctctcttct ccttgacctt
     3601 acggtcagta agaggcactc tacatgtgtt cagcatatag ggggcctcgg gttgatggta
     3661 aaatatcact cggggctttt ctctatctgc cgttcagcta atgcctgaga cagacagcct
     3721 caagcacccg ccgctattat atcgctctct ttaacccatt ttgttttatc gattctaatc
     3781 ctgaagacgc ctcgcatttt tgtggcgtaa ttttttaatg atttaattat ttaactttaa
     3841 tttatctctt tatcgcaatt attgacgaca agctggatta tttttgaaat attgtcctaa
     3901 caaataacgc cgactgacaa gaaattaatt attacttttc ctaattaatc cctcagaaat
     3961 cctcacctta agctatgatt atctgagctt agggtcactc gtcagcgctt acagccgtca
     4021 aaaactcatc tcaccgctga tggcgaaaat tctacaaagg ctcgtaaaaa acgaattatt
     4081 cctacactat aatctgattt taacgatgat tcgtgcgggg taaaatagta aaaacgattt
     4141 attcacctga aagagaaata aaaagtgaaa catctgcatc gattctttag cagtgatgcc
     4201 tcgggaggca ttattcttat cattgccgct atcctggcga tgatgatggc caacagcggc
     4261 gcaaccagtg gatggtatca cgactttctg gagacgccgg ttcagctccg ggttggttca
     4321 ctcgaaatca acaaaaacat gctgttatgg ataaatgacg cgctgatggc ggtatttttc
     4381 ctgttagtcg gtctggaagt taaacgtgaa ctgatgcaag gatcgctagc cagcttacgc
     4441 caggccgcat ttccagttat cgccgctatt ggtgggatga ttgtgccggc attactctat
     4501 ctggccttta actatgccga tccgattacc cgcgaagggt gggcgatccc ggcggctact
     4561 gacattgcct ttgcacttgg agtgctggcg ctgttgggaa gtcgtgttcc gttagcactg
     4621 aagatctttt tgatggctct ggctattatc gacgatcttg gggccatcat tatcatcgca
     4681 ttgttctaca ctaatgactt atcgatggcc tctcttggcg tcgcggctgt agcaattgcg
     4741 gtactcgcgg tattgaatct gtgtggtgta cgccgcacgg gcgtctatat tctggttggc
     4801 gtagtgttgt ggactgcggt gttgaaatcg ggggttcacg caaccttggc gggggtaatt
     4861 gtcggcttct ttattccttt gaaagagaag catgggcgtt ctccagcgaa gcgactggag
     4921 catgtgttac acccgtgggt ggcgtatctg attttgccgc tgtttgcatt tgctaatgct
     4981 ggcgtttcac tgcaaggcgt cacgctggat ggcttgacct ccattctgcc attggggatc
     5041 atcgctggct tgctgattgg caaaccgctg gggattagtc tgttctgctg gttggcgctg
     5101 cgtttgaaac tggcgcatct gcctgaggga acgacttatc agcaaattat ggcggtgggg
     5161 atcctgtgcg gtatcggttt tactatgtct atctttattg ccagcctggc ctttggtagc
     5221 gtagatccag aactgattaa ctgggcgaaa ctcggtatcc tggtcggttc tatctcttcg
     5281 gcggtaattg gatacagctg gttacgcgtt cgtttgcgtc catcagtgtg acaggacggt
     5341 ttaccgggga gccataaacg gctccctttt cattgttatc agggagagaa atgagcatgt
     5401 ctcatatcaa ttacaaccac ttgtattact tctggcatgt ctataaagaa ggttccgtgg
     5461 ttggcgcagc ggaggcgctt tatttaactc cacaaaccat taccggacag atccgggctc
     5521 tggaagagcg cctgcaaggc aaattattta agcgcaaggg acgtggtctc gaacccagcg
     5581 agctgggaga actggtctat cgctatgccg ataaaatgtt caccttaagc caggaaatgc
     5641 tggatattgt gaactatcgc aaagaatcca atttattgtt tgacgttggc gtggctgatg
     5701 cactttccaa acgcctggtc agtagcgtgc tgaatgctgc agtggtagaa ggcgagccga
     5761 ttcatcttcg ctgcttcgaa tccacccacg aaatgctact ggagcaatta agccagcata
     5821 aactggatat gatcatttcc gactgtccga tagactctac gcagcaggaa ggcctgttct
     5881 ccgtgagaat tggcgaatgt ggcgtgagtt tctggtgtac aaatccacca ccagaaaaac
     5941 cgttcccggc ttgtctggaa gaacggcgac ttttgattcc tgggcgacgt tcaatgttag
     6001 ggcgcaaatt gcttaactgg tttaactccc agggattaaa cgtagaaatc ctcggcgagt
     6061 ttgatgatgc cgcgttgatg aaagcttttg gtgcaatgca caatgcaatc ttcgttgccc
     6121 caacgcttta tgcatatgac ttttatgccg ataaaactgt cgtagaaatt ggtcgcgtcg
     6181 agaatgtgat ggaagagtac catgctattt ttgctgagcg gatgattcag cacccggcgg
     6241 tacagcgaat ctgcaatacg gattattctg cgctttttag tccagcggcg cgttaatcgg
     6301 cagctccccc aaagttaaag tggaggagat agattagttg tacataacca cgattttgac
     6361 tcggctcatt atttgcccgc ttgagacatt atttccatat gtacgcgggc gaataaatag
     6421 aggaatctga ttacttcctt catggggatg ctgaaaagag tagtaattgc ttttaccata
     6481 ctggatttca ttcgtaccat cattggagag ttgaaagcct acttgacccg caccgtcctc
     6541 actgttttct aactcatttt ttaatatgct ggttcctgac tcctgtatcg tcactggttc
     6601 aaagtaatat tcaacatcac tgggttcaaa aactaattca ccttgctcgc cctggatgca
     6661 gtcaaatctt atatgatgaa actgataatt ttcattattg atacgagaca gtacaaatcg
     6721 tccagtgtcg atggattgat cttcaaaacc acaggtcatt aaatttacca gtaaaatagt
     6781 atttaaatta taattaaagc gg
//
LOCUS       DAJVUY010000194         6771 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.195, whole genome shotgun sequence.
ACCESSION   DAJVUY010000194 DAJVUY010000000
VERSION     DAJVUY010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6771
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.195"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..158
                     /locus_tag="OQQ72_003746"
     CDS             <1..158
                     /locus_tag="OQQ72_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013319.1"
                     /translation="ILQLCRNDSLMIGRESFSVDRITPDDGGCSYIRLRREGAGNVRA
                     GGYYEGA"
     gene            145..718
                     /locus_tag="OQQ72_003747"
                     /pseudo
     CDS             145..718
                     /locus_tag="OQQ72_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001214489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            715..1116
                     /locus_tag="OQQ72_003748"
     CDS             715..1116
                     /locus_tag="OQQ72_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013320.1"
                     /translation="MNRHTQIRQAVLASLKGECGGNVVLFDGLPAFIDAQELPAVAVW
                     LSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLID
                     TMIPLGFNYQRDNEMATWAMAEITYQITYTN"
     gene            1127..1867
                     /locus_tag="OQQ72_003749"
     CDS             1127..1867
                     /locus_tag="OQQ72_003749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707740.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HCS2013321.1"
                     /translation="MTTPNPLAKTKGAGTTFWMYTGKGDAFANPLSDTDWLRLAMVKD
                     LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTLATLAWRPGDSGQKKLVQLFDS
                     GEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVG
                     VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKG
                     VKQGSVSIVGMTSDGEFVAVAAVTVSAP"
     gene            1926..2312
                     /locus_tag="OQQ72_003750"
     CDS             1926..2312
                     /locus_tag="OQQ72_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707739.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS2013322.1"
                     /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEG
                     ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAER
                     VLSLSGMGTIENAGDDDHEALTPEKS"
     gene            2321..2649
                     /locus_tag="OQQ72_003751"
                     /pseudo
     CDS             2321..2649
                     /locus_tag="OQQ72_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308863.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
     gene            2621..5662
                     /locus_tag="OQQ72_003752"
     CDS             2621..5662
                     /locus_tag="OQQ72_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS2013323.1"
                     /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAAGDAERSSARMQ
                     RFMERQTQAARQTMHAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK
                     MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ
                     DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV
                     SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA
                     GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEEFNRQLALTGHYAGVTVG
                     QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT
                     INQFKRLKDDPVNAAKALDNALHFLTATQLEQIRVLGEQGRSSDAARIAMSALAEETG
                     KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP
                     WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET
                     EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS
                     QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN
                     ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD
                     KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR
                     YWQELEVAQGDWKNGAMRAFQNFTADADNAVGTAEQMFTVAFSSAGNALATFCTTGKL
                     NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN
                     RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIGINND
                     GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR"
     gene            5662..5991
                     /locus_tag="OQQ72_003753"
     CDS             5662..5991
                     /locus_tag="OQQ72_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013324.1"
                     /translation="METFRWKVRPDMNVVSEPKVVAVKLGDGYEQRRPAGLNNLLSTY
                     SVTIRVRKGEHPPLKAFLERHGGVRAFQWTPPYDWKPIRVACRKWSASVGALWVTVTA
                     DFEQVVN"
     gene            5991..6771
                     /locus_tag="OQQ72_003754"
                     /pseudo
     CDS             5991..6771
                     /locus_tag="OQQ72_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001428152.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
BASE COUNT         1628 a         1553 c         2198 g         1392 t
ORIGIN      
        1 atattttaca gctgtgtcgc aatgattcgc tgatgattgg ccgggagtct ttcagcgtgg
       61 atcgtattac tcctgatgac ggcggatgta gttatatccg gttgcggcgt gaaggagcag
      121 gaaacgtaag ggcaggggga tattatgagg gggcttgaga atgccatccg caatctgaac
      181 agtcttgata cccgtatggt gccgcaggcc agcgcatggg cagtaaaccg ggttgctgca
      241 aaagttgtct cggttgccac ccggcaggtc gccaggaata ccgttgcggg agataaccag
      301 gtgaaggggg gccccctgaa actggtgcgt cagcgcgtcc gggtatttaa agccagtccg
      361 gcaggaaaaa tgtatgcccg tatccgtgtt aaccggggca atctgcccgc cattaagctt
      421 ggcacaacat gccggcgtgc cggtgacgga ctgaaggtgg ggaaatactt ttttcgtggt
      481 gcgtttatcc agcagctggc gaacggtcgc tggcatgttc tcaggcgtct tcctgaagcg
      541 tgttttgaaa caggaaagga cagtaagggg cggcccagaa aaaatcgtct gcccgtggag
      601 gttgtgaaaa ttccgctggc cggaccgctg acacaggcat ttgaggatgc ccgcgatcgc
      661 atcattgaaa cagctggggt atgccctgaa acagcaactg aggatacatt tgggatgaac
      721 aggcacacac aaatccgcca ggcagtactg gcaagcctga agggcgaatg cggggggaat
      781 gtcgtgcttt ttgacgggct tccggcattt attgatgcgc aggaactgcc cgccgtggcg
      841 gtgtggctga gtgatgcgca gtacaccgga aaaatgacgg atgaggacga ctggcaggct
      901 gttctgcata ttgccgtttt cgtccgtgca caggcgccgg attctgagct ggatacgtgg
      961 atggagaaca ccatatttcc ggccatgaag gatattccgg tgctttccgg actcatcgac
     1021 accatgatcc cactcggttt taactatcaa cgtgataatg agatggccac ctgggcgatg
     1081 gcggaaatca cgtaccagat cacgtacacg aattaaggag gtggcaatga ccacaccaaa
     1141 tccactggca aagacgaaag gtgcgggaac gacgttctgg atgtacaccg gcaagggcga
     1201 tgcgtttgcg aaccctttgt cggacactga ctggctgcgt cttgcgatgg tgaaggatct
     1261 gcaacctggc gaaatgaccg ctgatgcaga agatgacact tatctcgatg atgaagatgc
     1321 agactggaaa acgacaaccc aggggcagaa atccgtcggt gatactttgg cgacgctggc
     1381 ctggcgtccg ggtgacagcg ggcagaaaaa actggttcag ttgttcgatt ccggtgaagt
     1441 ctgcgcgttt cgtatcaaat accccaacgg tacggttgat gttttccgtg gctggctgag
     1501 ttcactgggt aaaaccatta cctcaaaaga ggtgatgacc cgtactgtaa aaatcagcgg
     1561 tgtggggcgt ccgtatctgg cagaggaggg cgctgaaacc gtgggtgtta ccggactgac
     1621 ggtggcaccg gcatctgtca gtgtcaaagc gggagcaacc accacactga cctttacagt
     1681 aaaacctgac ggggccagtg acaaagcgat cagtgtgcat tcgtcagatc ctcagactgc
     1741 ttcggtgacc ctgagcgggc ttgtggccac ggtgaaaggc gtgaagcagg gcagtgtcag
     1801 catcgtgggc atgacctctg acggagagtt tgtggcagtg gctgcggtga ccgtcagcgc
     1861 accataacag gacgatactc atcattgccc cggttatccg gggctttttg catccggaga
     1921 acatgatgtt tctgaaacag gatacgttta attatgaaaa acagtccgtg gtgctcagtg
     1981 agctgtccgg gctgcagaga attgaatatc tgacgtttgt tcagcagcga acggcaaagt
     2041 ttgatgcaca ggagggagaa ctgccggagg ctgaacgaca gattgctttt ctgcgtatgg
     2101 gaatggatat caatgcctgg ctggtttccc gctcactgtg gaatgctgag cagtctcagg
     2161 atgttgagac gctttgcgca tccattatga caacatggtc gtatgatgcg ctgggcgcgg
     2221 gggcggagag ggttctgtcg ctgagcggta tggggaccat tgagaatgcc ggggatgatg
     2281 atcatgaggc gctgacgccg gaaaagtcct gacgcgggaa atgcagtttg tcatgcggct
     2341 tgcccgggag ttccggcggg cagactggcg gcggatgctg tcggaaatgt cggccactga
     2401 gcttggtgag ggggcgatta tttccggatg cagagcttca gtgatgtgtg gatggatgcg
     2461 cagtttgcct cgctgaaggc attgatcgtg agaatggtgt ccggcagcag tgatgctgcg
     2521 gtggctgatt tcagcctttt accggaagag aacgggatac cggagcgaac ggacgaagaa
     2581 ctgatgcatc ttggggaagg tatttccgga ggtgtgcgtt atggaccaga tagccaacct
     2641 ggtcattgat ttggggattg atgcggcaga gtttaaaaat gaaattcccc gtatcaaaaa
     2701 ccttctgaat ggtgcagccg gtgatgcaga acggtcttct gcccgtatgc agcgttttat
     2761 ggagcgtcag actcaggcgg cccggcagac aatgcatgcg gcttcttcgg ctgcaacagc
     2821 agcatcagcc catgcgcaga cggtggagaa gaatgcacgg gctcatgaac gcatggcccg
     2881 tgaggtggaa caaacccgtc tgcgcgtgga tgccctgaat cagaaaatgc gcgaggaaca
     2941 ggcgcaggcc agggcactgg cggaggcgca ggataaagcg gctgccgcct tttatcgcca
     3001 gattgacagt gtgaaacagg ccggtgcggg gcttcaggaa ttacagcgta ttcagcagca
     3061 gatccgacag gccagaaaca gtggcggggt tggtcagcag gattatctgg cgctgatttc
     3121 ggagatcacg gcgaaaaccc gtgccctgac gcaggcagag gaacaggcca cccggcagaa
     3181 agcggcgttt atccgccagc ttaaagagca ggcaacccgc cagaatctgt cgtcttctga
     3241 gttgcttcgc gccagggcgg ctcagctggg ggtaagcagt gctgcagaag tgtatatccg
     3301 caaaatggag cgggcaggaa aagccacaca ttcgctgggg ctgaaaagtg cggcagcccg
     3361 gcgggagctg ggggtgttaa tcagtcagat ggcgcgcggc aattttggtg cgctgagggg
     3421 atccgggata acgctggcta accgtgccgg atggacaggc gcactgatgt cgccgaaagg
     3481 catgatgact ggcggcgtta ttggcggact tgtcgcggcg gtcctgggtc tgggtaaagc
     3541 ctggcatgac ggccggaagg agggcgagga atttaaccgt cagctggcgc tgacgggaca
     3601 ttatgccggt gtcactgtcg ggcagttgtg gaaactcagc cgggccatat ccgggaatgg
     3661 tatcacgcaa catgcggcag ccggtgcgct ggcacaggtg gtgggcagtg gggcatttca
     3721 tggaaacgat attggtatgg tggcgaaagc tgccgcacag atggagcgat cggttggcca
     3781 gtcggtcagc gataccataa atcagtttaa gcggctgaag gatgatcctg taaatgccgc
     3841 gaaggcgctg gacaatgcgc tgcatttttt gactgccact cagcttgagc agatacgcgt
     3901 ccttggggag caggggcggt ccagtgatgc ggcccggatc gccatgtctg cgctggcaga
     3961 ggaaaccggt aaacgcacat ctgatattga taataatctc aatgcgctgg gtagtacgct
     4021 gcaaaccttg tctgactggt ggaagcagtt ctgggatgcg gccatgaata ttggtcgtga
     4081 agactcgctg gatgcgcaga ttgatgcgtt acaggaaaaa attcagcgcg cgaaaaaata
     4141 tccgtggaca aacgcctcca cacaggtgga gtacgatcag cagcgtctta acgatcttca
     4201 ggagaaaaaa cgccggaagg atttgcagga tgcaaaagcg caggcagaac ggaattacca
     4261 ggagcaacag aaacgccgga atgctgaaaa tgccgcgctg aaccggatga atgaaacgga
     4321 agctgcacga catcagcggg aaattgcgcg tattaatgcc atgcagtacg ccgaccaggc
     4381 tgtcagggat gcggcgatac agcgtgaaaa tgaacgttac gaaaaagcca ttaagaaaaa
     4441 tacacgggca acccgtaatg atgaggccac ccggttattg ctgcagtaca gtcagcagca
     4501 ggcacaggtg gaagggcaga ttgctgctgc cagacagtca gcaggcattg ccactgaaag
     4561 gatgactgaa gcgcataaac agcttctggc cctgcagcag cgcatcagcg acctggacgg
     4621 gaaaaagctg acggcagatg aaaagagtgt gctggcccgt aagaatgagc tgattcaggc
     4681 gctgacgctg ctggatgtga aacagcagga gctgcagaaa cagacagcgc ttaacgacct
     4741 gagaaaaaaa acggttcagc tgaccagcca gctggcagac aaagaacgtg cactgcgtga
     4801 gcagcacaat ctggatattg ccactgcagg tatgggggat aagcagcggc agcgctacca
     4861 ggcacagttg cgcatccggc aggaataccg gcaacagttg caacagcttg agaatgacag
     4921 tcgccagaaa ggcacttacg ggacggagga ctaccggagg gctgaggagg tgctgaaggg
     4981 gagcctgaag cgacaactga atgaaaacaa acgctactgg caggaactgg aagtggcgca
     5041 gggcgactgg aaaaacggtg ccatgcgggc gtttcagaat tttacggcgg atgcggataa
     5101 tgcggtggga acggcagaac agatgtttac agtggcattc agcagtgccg gtaatgcact
     5161 ggcgacattc tgtaccaccg gtaagctgaa ttttaaatcc ttcacctctt ccctgttgtc
     5221 agatatggcc agaattatgg cacagatggc catgatgcag gcggtaaagg gcgtcggctc
     5281 tttattcggc ttcacgacta atgctgatgg cggtgtttac cagtctgctg atttgagtcg
     5341 ctacagtggc acggtggtta accgtccgac gttttttgct tttgcaaaag gcgcgggtgt
     5401 gatgggggaa gcgggacctg aagccattct gccactgcgt cgcggtgctg atggtaagct
     5461 gggggttgtg gcggatactg gtggttcagg catggtgatg tttgccccgc agtacaacat
     5521 cgggatcaat aacgacggca cgaacgggca gataggtccg gcagcactga aggtggttta
     5581 tgacctcggg aaaaaagcgg ccgcggactt tatgcaacag caggcccgtg atggtggccg
     5641 gttaagtgga gcataccggt aatggagacg tttcgctgga aggtgcgccc ggatatgaat
     5701 gtggtatcag agccaaaagt ggtggcagtg aagctgggtg atggttatga acagcgtcgc
     5761 ccggcgggac tgaataatct gctgtcgact tacagcgtga cgatacgtgt tcgtaaaggt
     5821 gaacacccac ctttaaaagc ctttctggaa cggcacggtg gcgtccgcgc atttcagtgg
     5881 acgccacctt atgactggaa accgatcagg gtggcttgtc gtaaatggtc ggcaagcgtg
     5941 ggggcgttat gggtgactgt aacggccgat tttgaacagg tggtgaactg atgcaggata
     6001 tccggcagga aacactgaat gaatgcaccc gtgcggagca gtcggccagc gtggtgctct
     6061 gggaaatcga cctgacagag gtcggtggag aacgttattt tttctgtaat gagcagaacg
     6121 aaaaaggtga gccggtcacc tggcaggggc gacagtatca gccgtatccc attcaggggg
     6181 agtggttttg aactgaatgg caaaggcacc agtacgcgcc ccacgctgac ggtttctaac
     6241 ctgtacggta tggtcgccgg gatggcggaa gatctgcaga gtctggtcgg cggaacggtg
     6301 gtccggcgta aggtttacgc ccgttttctg gatgcggtga acttcgtcaa cggaaacagt
     6361 gacgccgatc cggagcagga ggtgatcagc cgctggcgca tcgagcagtg cagcgaactg
     6421 agcgcggtca gtgcctcttt tgtgctggcc acaccaacgg agacggatgg cgcggttttc
     6481 ccggggcgta tcatgctggc gaatacctgt atgtggacct accgttctga tgagtgtggt
     6541 tacacgggca gggcagtggc tgacgagttc gacaaaccaa cgacggatat ccggaaggac
     6601 aaatgcagca agtgtatgcg cgggtgtgag ttgcgcaaca ataccggtaa tttcggcggt
     6661 ttcctttcca tcaataaact ttctcagtaa atccatgaca cagacagaat cagcgattct
     6721 ggcgcacgcc cggcgatgtg cgccagcgga gtcgtgtggc ttcgtggtga g
//
LOCUS       DAJVUY010000195         6677 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.196, whole genome shotgun sequence.
ACCESSION   DAJVUY010000195 DAJVUY010000000
VERSION     DAJVUY010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.196"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(210..485)
                     /locus_tag="OQQ72_003755"
     CDS             complement(210..485)
                     /locus_tag="OQQ72_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000187070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013325.1"
                     /translation="MTPEKHPETTMKRHRLTEAEERRLAEAIAAEARAMGLTKKDKMP
                     QETKRRLRARILKAILDERTASKNREATLTAGQDPDDTFTWQPLRRR"
     gene            719..2812
                     /locus_tag="OQQ72_003756"
     CDS             719..2812
                     /locus_tag="OQQ72_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-type pyocin domain-containing protein"
                     /protein_id="HCS2013326.1"
                     /translation="MSDYEGSGPTEGIDYGHSMVVWPSTGLISGGDVKPGGSSGIAPS
                     MPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVHSPWGNEKVSAA
                     RTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKIIRLMVTQQLEQVTDIPASQLPA
                     AGNNVPVKYRLMDLMQNGTQYMAIIGGIPMTVPVVDAVPVPDRSRPGTNIKDVYSAPV
                     SPDLPDLVLSVGQMNTPVLSNPEIQEEGVIAETGNYVEAGYTMSSNNHDVIVRFPEGS
                     GVSPLYISTVEILDSNGLSQRQEAENKAKDDFRVKKEEAVARAEAEKAKAELFSKAGV
                     NQPPVYTQEMMERANSVMNEQGALVLNNTASSVQLAMTGTGVWTAAGDIAGNISKFFS
                     NALEKVTIPEVSPLLMRISLGALWFHSEEAGAGSDIVPGRNLEAMFSLSAQMLAGQGV
                     VIEPGATSVNLPVRGQLINSNGQLALDLLKTGNESIPAAVPVLNAVRDTATGLDKITL
                     PAVVGAPSRTILVNPVPQPSVPTDTGNHQPVPVTPVHTGTEVKPVEMPVTTITPVSDV
                     GGLRDFIYWRPDAAGTGVEAVYVMLNDPLDSGRFSRKQLDKKYKHAGDFGISDTKKNR
                     ETLTKFRDAIEEHLSDKDTVEKGTYRREKGSKVYFNPNTMNVVIIKSNGEFLSGWKIN
                     PDADNGRIYLETGEL"
     gene            2809..3072
                     /locus_tag="OQQ72_003757"
     CDS             2809..3072
                     /locus_tag="OQQ72_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032488334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin D immunity protein"
                     /protein_id="HCS2013327.1"
                     /translation="MNKMAIIDLAKLFLASKITAIEFSERICVERRRLYGVKDLSPNI
                     LNCGEELFMAAERFEPDADRADYEIDDNGLKVEVRSILEKFKL"
     gene            3142..3288
                     /locus_tag="OQQ72_003758"
     CDS             3142..3288
                     /locus_tag="OQQ72_003758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_072020761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin release lysis protein"
                     /protein_id="HCS2013328.1"
                     /translation="MKKKIGGSMILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIG
                     VAVQ"
     gene            complement(4336..4527)
                     /locus_tag="OQQ72_003759"
     CDS             complement(4336..4527)
                     /locus_tag="OQQ72_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS2013329.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADDQADICEALHDH
                     ADELYRSCLARFGDDGENL"
     gene            4595..4918
                     /locus_tag="OQQ72_003760"
     CDS             4595..4918
                     /locus_tag="OQQ72_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS2013330.1"
                     /translation="MLTIRVTDEEHARLLARCEGKQLASWMRKVCLGAPPSKTSGLPT
                     LAPPLLRQFASVGNNLNQIARKINSGQWSGHDRVHVVAALMAIGRELSELRDEVRKQG
                     ERDDS"
     gene            4881..5624
                     /locus_tag="OQQ72_003761"
                     /pseudo
     CDS             4881..5624
                     /locus_tag="OQQ72_003761"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            5596..6156
                     /locus_tag="OQQ72_003762"
     CDS             5596..6156
                     /locus_tag="OQQ72_003762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS2013331.1"
                     /translation="MSNLLQMGTDFEKKLKERAVSTENILNSEFRKLEASVDRELNLN
                     GQKIRDAISAHTAAVKEQLETLNSAVNAQFSATENELARRQEELLWKLVKGRILYPSL
                     TALCVTGGIFLASWGLIQWQESRIAANILAIRDQEETLAKLREKTWGVTYHEGRNGKF
                     LVLPSGVKGENNWTVEKKNAVRLVRE"
     gene            6163..6396
                     /locus_tag="OQQ72_003763"
     CDS             6163..6396
                     /locus_tag="OQQ72_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS2013332.1"
                     /translation="MTELEMHLLNALEQLQQDYTQRLKDWESAFTDLQHMFELTRQEN
                     GQLREQCDDLSQQVQRLVEQVDHLSRLFITNSR"
BASE COUNT         1670 a         1418 c         1934 g         1655 t
ORIGIN      
        1 aaaaaaaaca gtgtcatgag gtttacgcag gcaaaaccag cgttattcac atggctgaat
       61 agctatgcat acggttaaaa tttatcaggt gcgatcgcgg cagcttttcg ggtggtttgt
      121 tgctattttt acctgtcagc agccgtgatc gcgctgaacg catttcagcg gtgcgtacaa
      181 ttaaggggtt atgttaaata acccttagct tagcggcggc gcagtggttg ccaggtgaag
      241 gtgtcatccg ggtcctgtcc ggcagtcagt gtggcttctc gatttttgct ggccgttcgt
      301 tcatcaagaa tggctttaag tatccgtgcc cggaggcgtc gctttgtttc ctgcggcatt
      361 ttgtcctttt tcgtcagccc catggcacga gcttcagcgg caatggcttc tgccagtcgg
      421 cgctcttcgg cttcggtcag tctatggcgt ttcatggtgg tctccggatg tttctctggt
      481 gtcataacag tttaactgtt ggctctctcc ttatgctaat cagccttctt tcatgcctgt
      541 tgccattgag tttaagaatg attggttgtt tttcttgagc gttttcacaa aaacgtaaat
      601 ccagtgggtt gacaggattt acgaggtgac gtaacttttc actgtatata aaaccactgg
      661 ttttatatac agtttgttgt ttttaacgca ttgttttaaa agtcaaagag gtatttttat
      721 gagtgattac gaaggtagtg gtccgacaga aggtattgat tatgggcact cgatggtcgt
      781 gtggccgtca acaggactga tttcgggtgg tgatgtgaaa ccaggaggct catcaggtat
      841 cgctccatcc atgcctccgg gatgggggga ttacagccca cagggtatcg cacttgtaca
      901 aagtgttctt tttccgggaa ttattcgccg gattattctg gataaggaac ttgaagaggg
      961 agactggtcg ggatggtctg tcagtgtgca tagcccttgg ggaaacgaga aagtttccgc
     1021 tgcacgaaca gttcttgaga atggtttacg tggtggtttg ccagaaccgt ctcgcccggc
     1081 tgctgtttct tttgcccgtc tggagcctgc ttccggaaat gagcaaaaaa ttattcgtct
     1141 tatggttaca cagcaactgg aacaggtaac ggatattccg gccagccagt taccagcagc
     1201 gggtaataat gtaccggtga aatatcgtct gatggacctt atgcagaacg gtacgcaata
     1261 tatggctatt atcggaggta ttccgatgac agtgccggta gttgatgccg ttccagttcc
     1321 ggaccggagt cgtccgggaa caaatattaa agatgtttac agtgcccctg tatcaccaga
     1381 tctaccggac ctggtattaa gtgtgggtca gatgaatact ccggttctgt ctaatcccga
     1441 aattcaggaa gaaggagtta ttgctgagac aggtaattat gttgaggctg gttatacgat
     1501 gtccagtaat aatcatgatg tcattgttcg ttttcctgaa ggcagtggtg tttctccgtt
     1561 atatatttca actgtagaga ttctggacag taatggtctg agtcagcgtc aggaagccga
     1621 aaataaagca aaggatgatt tcagagtcaa gaaagaagaa gcggtagccc gggctgaagc
     1681 tgaaaaagca aaagccgagt tatttagtaa agcaggtgtg aaccagcctc ctgtatatac
     1741 acaggaaatg atggaaaggg ctaattcagt aatgaatgag cagggagctc ttgttctgaa
     1801 taacactgcc agttctgtac aactggcgat gaccggaact ggtgtctgga ctgctgctgg
     1861 tgatattgca ggcaacataa gcaagttttt cagtaatgct ctggagaaag taaccatacc
     1921 cgaagtgagt cccctgctta tgcggatttc tcttggtgct ctgtggtttc attcagaaga
     1981 agctggagca ggaagtgata tcgtgccggg gcgaaatctg gaggcgatgt tttcgctgag
     2041 tgctcagatg ttggctggac agggcgtggt cattgaacct ggtgcgacga gtgtaaatct
     2101 gcctgttcgt ggacaattga taaacagtaa cgggcaatta gctctggatt tactgaaaac
     2161 agggaatgaa agtatcccgg ctgcggttcc tgttcttaat gctgtccgtg atacagcaac
     2221 aggactggat aaaatcacgt taccagcagt agtaggcgca ccttcccgga cgattctggt
     2281 taatccggta ccacaacctt cggtgccaac agatacaggt aatcatcaac ccgttccggt
     2341 tacaccagtg catacaggaa cggaagtaaa accggtcgaa atgccagtaa cgacgattac
     2401 tcctgtttct gatgttggtg gactacgaga ttttatttac tggcgtcctg atgctgctgg
     2461 gactggtgtt gaagctgttt atgtgatgct taatgatcct ctggattcag ggcgattttc
     2521 gcgtaaacaa cttgataaaa aatataaaca tgctggtgat tttggtatta gtgatacaaa
     2581 aaagaatcgt gaaactctta ctaaattcag ggatgctatt gaggagcatt tatcggataa
     2641 ggatacagta gagaaaggaa cataccgaag agaaaaaggt tcaaaagttt attttaatcc
     2701 taatacgatg aatgtggtta taattaagtc aaatggtgag ttcttatctg ggtggaaaat
     2761 aaatccagat gcggataatg gtcgaattta tttagagaca ggtgaactat gaacaagatg
     2821 gcaataatcg atttggcgaa attattttta gcttcgaaaa ttacagcaat tgagttttca
     2881 gagcgaattt gtgttgaacg gagaagattg tatggtgtta aggatttgtc tccgaatata
     2941 ttaaattgtg gggaagagtt gtttatggct gctgagcgat ttgagcctga tgcagatagg
     3001 gctgattatg aaattgatga taatggactt aaggttgagg tccgatctat cttggaaaaa
     3061 tttaaattat aatcatgagt gattttaata tctggcattt aagtataaat gtcagatatt
     3121 cactcatgac aaggagatgt catgaaaaaa aagatagggg gatctatgat tctcgttctt
     3181 gctgttttgt gtctgactgc ttgccaagct aactatgtaa gggatgttca gggaggaaca
     3241 attgctccat catcatcttc gaaactaatc ggggtggcgg ttcagtgaaa aatattaaag
     3301 gatcttcttg agatcctttt tttctgcgcg taatctgctg cctgtaaacg aaaaaacccg
     3361 ccttgtggcg ggtccttccg tccgatcaga agtcttcgac ctcttctaat cggcggtggt
     3421 aactggcttg gaggagcaca gtcaccaaaa ctgtcttttc agtttagcct taactggttc
     3481 ataacttcaa gagcaactcc tctaaatcag ttaccaatgg ctgctgccag tggcgttgag
     3541 tcgtgtcttt tccgggttgg ccccaagaga acagttaccg gagaaggtgc agcagtcggg
     3601 ctgaacgggg ggttcctgca tacagcccgg cccggagcga actgcctaag tcgccccgag
     3661 ataccagaag acgtgagcta tgagaaagcg ccacgtgtcc cgcaagggag aaaggcggaa
     3721 aaggtatccg gcaatcgata tggcgggaac gtgggggcgc aggagggagc gattcaccgg
     3781 aaacggtgat gatctttaag ccacgtcggg tttcgccacc gctggcggat ttcatggttg
     3841 agtcggaaga ctcccacaga tgcaccgaaa aagtgtctgt tttgtgaagt ccgtcagggg
     3901 ggcggagcct atggaaaaag cgccagcggc gcggcctttt gtcctggctt tgcctttttg
     3961 ctcacatgtt ctttccggcc ttatcccctg attctgtgga taactgtgtt accgtttttg
     4021 tgtgagtcag taccgctcgc cgcagccgaa cgaccgagcg tagcgagtca gtgagcgagg
     4081 aagcggaaga gcgccggaag ctacattttc tccttacgca tctgtgcggc atttcacacc
     4141 cggcatggtg cacttttcat acaatccgca ctgatgccgc ataagtaagc cagtatacac
     4201 tccgctatcg ctacgtgact gggtcatggc tgcgccccga cacccgctaa aacctgctga
     4261 cgcgccctga cgggcttgtc tgctcccggc atccgctcac aggccagctg tgaccgtctc
     4321 cgggagctgc atgtgtcaga ggttttcacc gtcatccccg aagcgtgcga ggcagctgcg
     4381 gtaaagctcg tcagcgtggt cgtgaagcgc ttcgcagatg tcagcctggt cgtcggcgtc
     4441 cagttcattc agtttttcca gcagggtcag cgtctggctt ctgatgaagc gggccatgtt
     4501 aagggcggtt ttttcctgtt tagtcacagt tctgtttctc catgtgtggg gagtctgtcg
     4561 gaggttttta atgataccgg tgaaacgcga aaggatgctc acgatacggg tcacggatga
     4621 ggaacatgcg cggctgctgg cacgttgtga gggaaaacaa cttgcgtcat ggatgcgtaa
     4681 ggtctgcctg ggggcaccgc catcgaaaac gtcaggtctt ccgacactgg caccgccgct
     4741 gttgcgccag ttcgcttcgg tcggcaataa cctgaatcag atagcccgga agataaacag
     4801 cggacagtgg tcggggcatg accgggttca tgtggtggct gcactgatgg ccatcggacg
     4861 tgaactgagt gagctgaggg atgaggtccg taaacaggga gaacgggatg atagttaagt
     4921 ttcatgccag gggaaaaggc ggtggcagtg gtccggttga ttacctgctg ggccgggagc
     4981 gtaaccggga aggggcgaga gttctgcggg gtgctcccga agaggtgcgg gaactcatcg
     5041 atgccacgcc gtttgcgaaa aaatacacct cgggggttct gtcttttgca gagcagaccc
     5101 tgccaccggg agagcgtgaa agggtgatgg agagctttga gcgggtactg atgcccggtc
     5161 ttgaaaaaaa tcagtacagc atcctgtggg tggagcacca ggacaagggg cgtcttgagc
     5221 tgaattttgt catcccgaat atggagctgg cgagcggaaa acggctccag ccctattacg
     5281 accgagcgga ccgtccgcga atcaatgcct ggcagacact ggtgaatcac cattacgggc
     5341 tgcacgaccc gaacgcaccg gagaacaggc ggacacttgt caccccgaat aatctgccga
     5401 aagcgaaaca ggaggccgca gaagcgatta cgaggggact ggaggctctt taccatgccg
     5461 gagcgctaaa aacgcgtcag gatgtcactg aggcgcttac agcggcaggt tttgaggttg
     5521 tgaggacaac caggagcagt atcagtatcg ccgacccgga gggcgggcgt aatctcaggc
     5581 tgaaaggggc gctgtatgag caatctttta caaatgggga cagacttcga gaagaaactg
     5641 aaagagcgtg ccgtctctac agagaacata ctgaacagcg agttcaggaa gctcgaagcg
     5701 tctgtagaca gggaactgaa cttaaacggg cagaaaatca gagacgctat cagcgcacac
     5761 acagcagcgg tgaaagaaca actggagacg ctgaacagtg ccgtgaacgc gcagttcagc
     5821 gccacagaga acgaactggc ccggcggcag gaagagctgc tctggaagct ggtcaaaggg
     5881 cggatactgt acccgtcgct gacggcgctt tgcgtcacgg gcgggatttt tctggcgtca
     5941 tgggggctga ttcagtggca ggaaagccgg attgcggcga acatcctggc tatcagggac
     6001 caggaagaga cgctggcgaa actccgggaa aaaacatggg gtgtgacgta tcacgagggc
     6061 aggaacggga aatttctggt attgccgtcc ggggtgaagg gggaaaacaa ctggacggtg
     6121 gagaagaaga acgcagtaag actggtcagg gagtaagtga gtatgacaga gctggaaatg
     6181 cacttactga acgccttaga gcaattgcag caggactata cgcagcggct gaaagactgg
     6241 gagagcgcct tcacggattt gcagcatatg ttcgagctga cacgacagga gaacgggcaa
     6301 ctgagggaac agtgcgacga cttgagtcag caggtgcaga gattagtcga gcaggtggac
     6361 cacttgagtc ggttatttat cacgaacagc agataaggga tgaacaggaa aggcaggcac
     6421 gcctggaacg ggagcgtgcg cggtcctggc atgaagagca ggaacgggaa gcacgggtat
     6481 ggcgtggccc gtcaataggg atatgacggt gagttgttcc gggaggttgc cagatggtac
     6541 cggaacgcgt taaaaacgca tccgggcgcg attctggcgt gtcgtttttg ttgctgtgtt
     6601 ttgcctcttt gccagatcgc gctcattcct cagcctcatc ccgcgatgtc tgcgtatgtc
     6661 atcaactgaa aagatgg
//
LOCUS       DAJVUY010000196         6620 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.197, whole genome shotgun sequence.
ACCESSION   DAJVUY010000196 DAJVUY010000000
VERSION     DAJVUY010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6620
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.197"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..351
                     /locus_tag="OQQ72_003764"
     CDS             <1..351
                     /locus_tag="OQQ72_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417590.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013333.1"
                     /translation="TALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDNYIIQTLDV
                     GTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTAPTHFNKTCITSDCWQ
                     ILFFSPDHFNNDFY"
     gene            373..1305
                     /locus_tag="OQQ72_003765"
     CDS             373..1305
                     /locus_tag="OQQ72_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005056257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013334.1"
                     /translation="MFPVSSIGNDISSDLVRRKMNDLPEIPIENNLEALAPGIEKLKQ
                     TSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSFLRLDFLGYNAQIIQRSD
                     NTCELTINEPLKNQEISTGNINANCPLKDIYNEIRRLNATFSCGTGDIVDLSSLDLRN
                     VDLDYYDFTDKHMANTILNPFKLDSTNFTNANMFQVNFVSSTQNATISWDYLLKITPV
                     LISISDMYSEEKIKFVESCLNELGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKE
                     IYKSSSKINNCLNRIKLPEMKEFSSKKKHMITSI"
     gene            complement(1940..2316)
                     /gene="rnpB"
                     /locus_tag="OQQ72_003766"
     ncRNA           complement(1940..2316)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="OQQ72_003766"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2349..3494)
                     /gene="garK"
                     /locus_tag="OQQ72_003767"
     CDS             complement(2349..3494)
                     /gene="garK"
                     /locus_tag="OQQ72_003767"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HCS2013335.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQVSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(3591..4481)
                     /gene="garR"
                     /locus_tag="OQQ72_003768"
     CDS             complement(3591..4481)
                     /gene="garR"
                     /locus_tag="OQQ72_003768"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS2013336.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(4511..5281)
                     /gene="garL"
                     /locus_tag="OQQ72_003769"
     CDS             complement(4511..5281)
                     /gene="garL"
                     /locus_tag="OQQ72_003769"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HCS2013337.1"
                     /translation="MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWL
                     VLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET
                     KEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN
                     VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP
                     VEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
     gene            complement(5297..6595)
                     /gene="garP"
                     /locus_tag="OQQ72_003770"
     CDS             complement(5297..6595)
                     /gene="garP"
                     /locus_tag="OQQ72_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GarP"
                     /protein_id="HCS2013338.1"
                     /translation="MHTRYLILLIIFIVTAVNYADCATLSIAGTEVAKELQLSTVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLT
                     FAWGWEHVFTVMGVIGFVLTALWIKLIYNPTDHPRMSAEELKFISENGAVVDMDHKKP
                     GSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKV
                     GLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNN
                     TTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGY
                     LVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK"
BASE COUNT         1812 a         1724 c         1443 g         1641 t
ORIGIN      
        1 actgcattga atttctatca aggcgatgtt ccttctgtca tgatccgaat ccaaccggaa
       61 aatatgagtc cattcatcat agatatttct acaggagaac atgataatta tatcatacaa
      121 acattagatg taggcacttt tgcacctttt ggtgaacaat gtacttgctc agccgtcaat
      181 aaaaaagagc tggaatgtat taaggagacg atttctaagt attgcgcaaa gttcacccaa
      241 aaagaagcca tcttaacagc ccctacgcac tttaataaaa cctgcattac ttcagattgt
      301 tggcaaattc tctttttttc acccgatcat tttaataatg atttttattg attatttata
      361 aaggataaaa taatgttccc tgtttcatca attggtaatg atattagtag tgatttagtc
      421 cgtcgaaaaa tgaatgacct tcctgaaatc cccatagaaa ataatctcga agcactagca
      481 ccaggtatag aaaaactaaa acagacctct attcaaatgg tcactttact taacgcgtta
      541 caaccaggtg gaaaatgtat tatcactggt gattttcaaa aagaattagc gtacttacaa
      601 aatgtaattc tttataatga ctcgtttctt cgtctggatt ttttaggtta taacgcccaa
      661 attattcaac gatcggacaa tacctgcgaa cttaccatta atgaaccgtt aaaaaaccag
      721 gaaatatcta caggcaatat caatgctaat tgtccattaa aagatattta caatgaaatc
      781 aggaggttga acgcaacctt tagttgtggg actggagata tagttgatct atcctctctg
      841 gacttacgta atgtcgattt agattattat gatttcacag ataaacatat ggctaatact
      901 attctaaatc cttttaaatt ggattcaaca aattttacta atgccaacat gtttcaggtt
      961 aattttgtta gttcaacaca aaacgccaca atctcctggg attatttact aaaaataacg
     1021 cctgttttaa taagtattag cgatatgtat tctgaagaaa aaatcaagtt tgtcgaaagt
     1081 tgtttaaatg agcttggaga cattaccgaa gaacaattaa aaattatgag atttgcaatt
     1141 ataaaatcta taccaagggc aactcttaca gataaattag aaaatgaatt aacaaaagaa
     1201 atatataaaa gctcatcgaa aatcaacaat tgcttgaaca gaattaaatt accagagatg
     1261 aaagaattct catcaaaaaa aaaacatatg attacatcga tataatcatt gaagattatg
     1321 aaaatatcaa agaaaatgct tatctggtcg tcccccaaat taattatact atggatttaa
     1381 acatagaaga ctccagctca gaagagttaa taccctcgag aaagacgaaa attcttcgga
     1441 caatggcttt gaagtcgaag aatataacgc atatgaagca tataactcag agaatctata
     1501 ttttaccaga gaggaatata cgtatgatta cgacctttca aatgcaatat agacttaata
     1561 acttcttaca aaatctataa ttaataccgt agatattcat tcatcttacc ctgtgcacca
     1621 aaagcaaaaa ctcactgacg cgggtttgaa actgatggca accgcaaaaa tgcctgatgc
     1681 gctacgctta tcaggcctac gccatctctg caatatattg aatttgcgtg cttttgtagg
     1741 caggataagg cgttcacgcc gcatccggca tgaataaagc gcactcaaca atctgaaacc
     1801 cgccggaacg gtttattacg tacatcaggt gaaactgacc gataagccgc tttcttttgg
     1861 gtatagtgtc gtggacagtc attcatcttt ctgcccctcc aaaagcaaaa acccgccgaa
     1921 gcgggttttt acgtaaatca ggtgaaactg accgataagc cgggttctgt cgtggacagt
     1981 cattcatcta ggccagcaat cgctcactgg ctcaagcagc ctacccgggt tcagtacggg
     2041 ccgtacctta tgaaccccta tttggccttg ctccgggtgg agtttaccgt gccacggact
     2101 gttaccagcc gcgcggtgcg ctcttaccgc accctttcac ccttacctga tcccgcttgc
     2161 gcgggccatc ggcggtttgc tctctgttgc actggtcgtg ggtttccccc ccaggcgtta
     2221 cctggcaccc tgccctatgg agcccggact ttcctcccct ccgcccgtct cccccgaaga
     2281 ggacgacgac gaagcggcga ctgtctggtc agcttcggcg cgcagtatag agggtttgcg
     2341 cgcccttgtc accccgcgtt gcgcattcca atcgccagtg tcgcggcgat attacgtgaa
     2401 gcacggcaga tattgtcata agccccgcgg aatgcttcgt ccaacgtacc tatgctggtc
     2461 aatacgctga agaccgcatc aatgccatgc tgatgtacaa cgccaacatc atcggtcagg
     2521 ctacccgcaa tgccaatcac cggtttatgg tacttcttcg ccacgtttgc gacaccaatc
     2581 ggtaccttgc cgtgaatact ctggctgtca atacgccctt caccggtgat caccagcgta
     2641 caatcgtgaa tatgttcttc cagattcagc gccgtagtga cgatttcaat accacttttc
     2701 agttccgcac caagaaacgc catcagcgcc gcgcccatac cgcccgcagc tcctgcgccg
     2761 gggacatctt tcacatcaac atgcagcgct tttttaatga cctcggcata gtgagagagg
     2821 ttattgtcca gctcaacaat catcgcttca ctggctccct tttgtgggcc aaagatgcgc
     2881 gatgcgccgt tatcgcccac cagcggattg gtgacatcac aagcgacgcg aatgacgcaa
     2941 tcttttaagc gcggatcgag gccggaaata tcaatatcat tcagagtatt aagactaccg
     3001 ccgccaaaac caatttcatt gccgttggcg tcgcataatt tcgcccccag cgcctgtacc
     3061 atgcctgcgc cgccatcatt tgtagcgctg ccgccaatgc cgataataat gtttgtcgca
     3121 ccgctctcca gcgcctgcag gattaactcg cctgtgccgc gtgaagtggt cacgagtgga
     3181 tcgcgttttt ccgcaggtac cagctccagc ccactggccg ccgccatttc aataaacgcg
     3241 gttttgccat cgccggagat cccccaactg gcattcactt tctcgcccaa cggccctgta
     3301 acccaggcgt gacgttcgga aacctgggtg gctgcaatca tcgcttccac cgttccttcg
     3361 ccaccgtcgg caaccggaac agaaacgtac tgtgcatcag gaaaaatttc ccgaaatcct
     3421 ttttctatcg cctgcgcaac ctcgctggca gataaacttt ctttataaga gtctggggcg
     3481 attacgattt tcatacctat gcctgttacc acatgacgcc ggagggcgtt tctcttattc
     3541 ggcgtggatt ccaggcccgg attgcaatac gccatccggg cacgacgtca ttaacgagta
     3601 acttcgactt tcgccagttt ttcgtagtag cacgccagag cgctatgatc cgccgttcct
     3661 aaaccatctg cacgcagtgc ctgcatcatc tccataaccg cagctgtgag cggcagttgc
     3721 gcgccgacgc cgtgagaagt atccagcgca ttcgccagat ccttaatatg cagatcaatg
     3781 cggaagcccg gcttgaagtt gcggtccatc accatcggcg ctttggcatc cagcacggta
     3841 ctgcccgcca gcccaccgcg aattgcctga taaaccaggt ccgggttaac gcccgcttta
     3901 gttgccagcg ttaacgcttc tgacatcgca gcaatattca gcgccacaat gacctgattt
     3961 gccagtttgg tgacgttacc tgcaccgatt tccccggtat gcaccacgga acccgccatc
     4021 gctttcatca aatcatagta tttgtcgaaa atagccttgt cgccgcccac catcactgac
     4081 agcgtaccgt cgatggcttt cggttcaccg ccgctcaccg gagcatccag catatcaatg
     4141 cctttcgctt tcagcgcttc gctgatttca cggcttgcca gcggtgcgat agaactcata
     4201 tcgatcaata ccgtacctgg cttcgcgcct tcaataatgc cattctcacc cagcgccacc
     4261 tctttcacat gaggggagtt tggcagcatg gttatgatga cgtcgcactg ttcagcgatc
     4321 gctttagccg tagacgctgt ttctgcacct gcagcaatca cgtcagcaat agcttctggg
     4381 ttacggtcag caaccaccag cgagtaacct gctttcagaa ggtttttact cattggttta
     4441 cccataatcc ccaggccaat aaaaccaact ttcatagtca tatcaatcat ctctcttgtt
     4501 gcggtggtgg ttatttttta aaggtatcag ccagtttctg agtggcagag cggaagacgc
     4561 caagatcgct gccgacagcc acaaacgtcg cgccccattc cagataacga cgcgcatcgg
     4621 cttcgaccgg cgcgagaata ccgctgggtt tgccgtgcgc actggcacgg ttaaaaatat
     4681 gctgaattgc tttttgtaca tccggatgcg aggcattgcc gagatggccc aatgccgcag
     4741 ccagatcgct ggggccgacg aagataccgt ctacaccttc ggtagcggca atagcatcga
     4801 cgttatctac gccctgctga ctttctatct ggaccagaat agtgatgttc ttgttcgact
     4861 gagcgaaata atccgccacg gtgccaaaca tattggcgcg gtgagaaacg gagacgccgc
     4921 gaatgccttc cggcgggtaa cgagttgatg ccaccgcctg ctctgcttcc tcttttgttt
     4981 ctacaaaagg aatcaggaaa ttatagaaac cgatatccag aagacgctta ataattaccg
     5041 gctcgttggt cggcactcgc actactggcg cgctggcgct gcctttcagg gccattaact
     5101 gcggaataaa cgtggaaata tcgtttggcg catgttcgcc atccagcacc agccagtcaa
     5161 acccagccaa accaagaact tcagtgctaa tcgggttaga gagtgctgac cagcaaccaa
     5221 tttgtacctg tttcgcagcc agtgcggctt tgaatttatt cgggaaaaca tcgttattca
     5281 tcgcttatac ctttgcttat ttctgcaatt ccatacgttt aatgtcgcca actacgaaga
     5341 ggtagcagac catcgccatc agcgctgaac atcccacgaa aaccagtgct gcattgaagg
     5401 agtgcagttc acttaccagg tagccaatca ccagtggagt gacaatggag gcaacattgc
     5461 caaagacgtt aaagacgccg ccacagaggc caacaatctc tttcggcgcg gtgtcagaaa
     5521 tcaccggcca gcccagagca ccaaatcctt tgccaaaaaa agccagcgcc atcagcatga
     5581 ccaccagcgt ggtgttgttg gtgtagttac ataagatgat ggtggaagcc agcaacattc
     5641 ccagcacaat cggtagctta cgtgccaggg tcagggataa accgcgtttg atcagataat
     5701 ccgagaagac acctcccagc acgccgcccg caaaaccaca cagtgccgga atcgaggcga
     5761 ccagacccac tttcagaatc gacatgcctt tttcctgcac cagataaatc gggaaccagg
     5821 tgaggaagaa ccaggtgatg gtgttgataa aatattgtcc gaaaaatacg cccaacatca
     5881 tgcggttaga gagcaattgc ttgatgtaat gcagtttggg accgcttgct gccgcgctgc
     5941 ccggcttttt gtggtccata tcgaccaccg cgccattttc agagataaac ttcagctctt
     6001 ccgcagacat acgtgggtga tctgtcgggt tataaatcaa cttgatccac agcgccgtca
     6061 gcacaaaacc aatcaccccc ataacggtga agacgtgctc ccagccccag gcgaaagtca
     6121 gccagccaag cagaggcgaa aagagcgcca gcgagaaata ttgcgccgag ttaaagatgg
     6181 cggaggcagt accacgttct ttcgtcggga accaggcggc gacaatacgg gcgttcgccg
     6241 ggaatgatgg cgcttccgag aagccgagca taaagcgcat aaagaacata gagatccctg
     6301 cccaggccag cgggaacata tcaacaaagc cttgcaggaa ggtgaatagc gaccagaaaa
     6361 agaggctgta ggtgtaaact tttttcgagc caaacttatc aagcagccag ccgccgggaa
     6421 tttgcatcag caggtaggcc cagccaaaag cggagaagat gtaacccatc gaaaccgtac
     6481 ttaactgcaa ctcttttgcc acttcggtac cagcaataga cagcgttgca caatcggcgt
     6541 agttaacggc ggtaacaata aaaataatca gtaatattaa atagcgggta tgcacgcctt
     6601 tcttttttac gtcaacggtg
//
LOCUS       DAJVUY010000197         6593 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.198, whole genome shotgun sequence.
ACCESSION   DAJVUY010000197 DAJVUY010000000
VERSION     DAJVUY010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6593
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.198"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            27..173
                     /locus_tag="OQQ72_003771"
     CDS             27..173
                     /locus_tag="OQQ72_003771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HCS2013339.1"
                     /translation="MQHGHIAQRGNHDELAQQSGWYRDMYRYQQLEAALDDAPEIREE
                     AVDA"
     gene            166..1947
                     /locus_tag="OQQ72_003772"
     CDS             166..1947
                     /locus_tag="OQQ72_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HCS2013340.1"
                     /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL
                     LISYFIDNMVAKNNLPLKMVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRT
                     DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM
                     FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ
                     QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS
                     GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDR
                     PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP
                     LTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL
                     ETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID
                     SGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAAQG
                     RYWQMYQLQLAGEELAASVREEESLSA"
     gene            2128..2466
                     /gene="glnK"
                     /locus_tag="OQQ72_003773"
     CDS             2128..2466
                     /gene="glnK"
                     /locus_tag="OQQ72_003773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HCS2013341.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            2496..3782
                     /gene="amtB"
                     /locus_tag="OQQ72_003774"
     CDS             2496..3782
                     /gene="amtB"
                     /locus_tag="OQQ72_003774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HCS2013342.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="OQQ72_003775"
     CDS             complement(3831..4691)
                     /gene="tesB"
                     /locus_tag="OQQ72_003775"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HCS2013343.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            4909..5481
                     /locus_tag="OQQ72_003776"
     CDS             4909..5481
                     /locus_tag="OQQ72_003776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
                     /protein_id="HCS2013344.1"
                     /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPTANTSISATQQPA
                     IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV
                     LPFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINKGGTKADLTLVPVQQTAVPV
                     QASGGATTTVPSTSPTQVNPSSAVPAPTQY"
     gene            complement(5512..5823)
                     /locus_tag="OQQ72_003777"
     CDS             complement(5512..5823)
                     /locus_tag="OQQ72_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HCS2013345.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            5986..6082
                     /gene="ffs"
                     /locus_tag="OQQ72_003778"
     ncRNA           5986..6082
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="OQQ72_003778"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6202..6555
                     /locus_tag="OQQ72_003779"
     CDS             6202..6555
                     /locus_tag="OQQ72_003779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HCS2013346.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
BASE COUNT         1447 a         1637 c         1915 g         1594 t
ORIGIN      
        1 gggatgcgtt catataaatt attgtgatgc agcacggaca tatcgcccag cgtggcaatc
       61 atgatgagtt ggcgcaacaa agcggctggt atcgcgatat gtatcgctat caacaactgg
      121 aggcggcgct cgacgacgct ccggaaattc gcgaggaggc cgtcgatgcg tagttttagc
      181 caactgtggc cgactctcaa gcgtctgtta gcgtacggtt cgccgtggcg taaaccgctg
      241 gggattgcgg tcctgatgat gtgggttgcg gcagcggcag aagtcagtgg gccgctgctt
      301 atcagctatt ttatcgacaa tatggtagcg aaaaataacc tgccgttgaa aatggttgca
      361 gggctggctg cggcgtatgt tgggctacaa ctgtttgccg ccgggctaca ttacgcgcag
      421 tcgctgctgt ttaatcgggc ggcagtaggc gtagtgcaac agttgcgtac cgacgtgatg
      481 gatgccgcat tgcgccagcc attaagcgag tttgataccc aacccgtcgg gcaggtgatt
      541 tcccgcgtca ctaatgacac tgaagtgatc cgcgatctct acgttaccgt agtggcaact
      601 gtcctgcgta gcgccgcact ggtgggcgcg atgctggtgg cgatgttcag cctcgactgg
      661 cgaatggcgc tggtggcgat aatgattttc ccggtggtgc tggtggtaat ggtgatatac
      721 cagcgttaca gcacgccgat tgtccgtcgt gtgcgcgcct atctggcgga tatcaacgac
      781 ggctttaacg aaatcatcaa tggcatgagc gttatccagc agttccgtca gcaggcgcga
      841 tttggcgaac gtatggggga ggccagtcgt tcacactata tggccaggat gcaaaccctg
      901 cgcctcgacg gttttctgct gcgtccgctg ctgagtctgt tttcatcgct cattctttgt
      961 ggcttgttga tgctgtttgg cttctccgct agcggcacca ttgaagtagg cgtgctgtat
     1021 gcgtttatca gctatcttgg gcgacttaac gaacccttaa tcgaactgac cacgcaacag
     1081 gcgatgctgc aacaggctgt tgttgctggt gagcgcgtgt ttgaactgat ggacggaccg
     1141 cgccagcaat atggcaatga tgatcgcccg ttacagagtg gcaccatcga agtcgataac
     1201 gtgtcatttg cttatcgcga tgacaatctg gtgctaaaga acattaatct ctctgtgcct
     1261 tcgcgtaact ttgtggcact ggtcgggcat accggcagtg gcaaaagcac cctcgccagt
     1321 ttattgatgg gctattaccc gctaacggaa ggtgagattc gccttgatgg tcgtccatta
     1381 agttcgctaa gtcacagcgc gctgcgccag ggcgtggcaa tggtgcagca agatccggtg
     1441 gtgctggcgg ataccttcct cgccaacgtg acgctggggc gtgatatctc cgaagaacgc
     1501 gtctggcagg cgctggaaac cgtgcaactg gcggagctgg cgcgcagcat gagtgatggt
     1561 atttatacgc cgctgggcga gcaggggaat aatctctccg tcgggcaaaa gcaactgctg
     1621 gcactggcac gcgtgttggt ggagacgccg caaatcctga tccttgatga ggcaaccgcc
     1681 agcattgact ccggtactga acaggcgatt caacatgctc tggcggctgt gcgtgaacat
     1741 accacgctgg tggtgattgc tcaccgctta tcgaccattg ttgatgccga caccattctg
     1801 gtgcttcatc gtgggcaagc cgtggagcag ggcactcacc agcaactgct ggcggcccag
     1861 ggacgctact ggcagatgta tcaactgcaa cttgcgggcg aagagctggc agccagcgtg
     1921 cgtgaagaag aatcattgag cgcctgaata gcgcaatatt tcatcgttgg tgcaaaaatg
     1981 taacgcactg tgcactgtca tagtgcgttt tcattttcaa tcttcttaac ttcctgctct
     2041 ctttctcgtt tttcatttct ggcacaccgc ttgcaatacc ttcttcgtgt agcagaacca
     2101 ttaccgaatt ctgactggag gggatctatg aagctggtga ccgtgataat caaaccattc
     2161 aagctggaag acgttcgtga agcgttatct tccattggta ttcagggcct gaccgtcacc
     2221 gaagtgaaag gtttcgggcg tcagaaaggg catgccgagc tgtaccgggg ggcggaatac
     2281 agcgtcaact tcctgccaaa agtaaaaatt gatgtggcaa ttgctgatga ccaactcgat
     2341 gaagtgatcg atatcgtcag taaggcggct tacaccggaa aaattggcga cggcaaaatc
     2401 ttcgtcgctg aattgcaacg cgtcattcgt attcgtaccg gcgaagccga cgaagcggcg
     2461 ctgtaatctc tggcacacag caacaggaac gaaaaatgaa gatagcgacg ataaaaactg
     2521 ggcttgcttc actggcgatg ctgccgggac tggtaatggc tgcacctgcg gtggccgata
     2581 aagccgacaa tgcgtttatg atgatttgta ctgcgctggt gctgtttatg actattccgg
     2641 ggattgccct gttttacggt gggttgattc gcggcaaaaa cgtgctgtcg atgctgatgc
     2701 aggtgacggt gacgtttgca ctggtctgta ttctctgggt ggtttacggt tactcgctgg
     2761 cgtttggtga gggtaacaac ttcttcggca acgttaactg gttgatgctg aaaaacatcg
     2821 aactgacggc ggtgatgggc agcatttatc agtatatcca cgtagcgttt cagggatcgt
     2881 ttgcctgcat taccgtaggc ttgatagttg gggcgctggc ggaacgaatc cgcttctcag
     2941 ctgtgttgat tttcgtggtg gtatggctga cgctctctta cattccgatt gcgcatatgg
     3001 tgtggggcgg cggtttgctg gcttctcacg gtgcactgga tttcgcgggt ggcacagtgg
     3061 tgcacattaa cgccgcaatc gccggtctgg tgggcgcgta tctgataggc aaacgcgtgg
     3121 gcttcggtaa agaggcgttt aaaccgcaca acctgccgat ggtcttcacc gggactgcca
     3181 ttctctatat cggttggttt ggctttaacg ccgggtcagc gggcacggcg aatgaaatcg
     3241 cggcactggc atttgtgaat actgtggtcg caacggcggc ggcaattctt ggctggatct
     3301 tcggtgaatg ggcgctgcgt ggtaagcctt cactgctggg ggcgtgttct ggcgcgattg
     3361 ccggtctggt cggcgtgacg ccagcgtgcg gctacattgg ggttggcggc gcgttgatta
     3421 tcggcgtggt agctggtctg gcgggcttgt ggggcgttac catgctcaaa cgcttgctgc
     3481 gggtggatga tccctgcgat gtcttcggtg tgcacggcgt ttgtggcatt gtcggctgta
     3541 tcatgaccgg gatttttgcc gccagctcgc tgggcggcgt gggcttcgct gaaggtgtga
     3601 cgatgggtca tcagttgctg gtacagctgg aaagcatcgc cattacgatc gtctggtccg
     3661 gtgtggtggc atttattggc tacaaattgg cggatctgac ggttggtctg cgtgtaccgg
     3721 aagagcagga gctagaaggg ctggatgtca acagtcacgg cgagaatgcc tataacgcgt
     3781 aacaagcact gcaaaaaaca gccggacggt tttcacctcc ggctattttt ttaattgtga
     3841 ttacgcatca ccccttcctg aacggtcgag gcaaccagta cgccgtcctg ggtataaaac
     3901 tcaccgcgca caaagccacg tgcgctggac gccgaggtgc tctccacgct atacagcagc
     3961 cattcattca aattaaacgg gcgatggaac cacatggaat ggtcaatggt ggcaatctga
     4021 atccccggtt cgagaaaacc gatgccgtgc ggctgtagag ctaccggcag gaagttaaga
     4081 tcagaagcgt aaccgagcag atactgatga acgcgcaggt catccggcac gctaccattt
     4141 gcgcggatcc acacctgacg atgtggttct gcgacgtgac ctttcagtgg gttatgaaac
     4201 tccaccggac ggacttccag cggacgatcg cagatgaatt tatctttaag cactggcggc
     4261 agcaggtgcg ccagcgattg ggcgatttgc gtttccgaag gcaggccatc aggcgctggc
     4321 gcggacggca ttgttttttg atgttcgaaa cccgcttctg gtgcctggaa agaggccgtc
     4381 atataaaaaa tcggtttgcc gttttgaata gcagcaaccc ggcgggcgct gaagctgtta
     4441 ccatcacgca gcgtttcgac atcataaata atcggtttct tactatcgcc tgggcgaaga
     4501 aagtagctgt gaaacgaatg taccagccgc tcttccggga cggtctcttt tgcagcatac
     4561 aaggcctgac ccacgacctg gccgccaaac acctggcgta aacctaaatc ttcactctgg
     4621 ccgcgaaaga gtcctgcctc aattttttcc agatttaaca atgccagtaa attttttagc
     4681 gcctgactca tataactctc cagtaacaaa gctgccgcag caagccaaag tgagttgagt
     4741 ataacgcaaa tttgccactg gtccgatggg tgcaataatc tgaattacgg gctaattaca
     4801 ggcagaaatg cgtgatgtgt gccacactta ttgacgttac tattttgtta accactcttc
     4861 cggcgaggaa agttagcccg ctggtgcatt gataataagg agaaatgaat gaaactcgtg
     4921 cacatggcca gtggtttagc ggttgcgatt gcgttggcgg cttgcgcaga taaaagcgcg
     4981 gatattcaga cgccagcccc gactgcaaat acgtctattt cagcaacaca acaacctgct
     5041 atccagcaac cgaatgtctc cggtaccgtc tggatccggc agaaagtcgc actgccgcct
     5101 gatgctgtgc tgaccgtgac actttctgac gcgtcgttag ccgatgcacc gtcaaaagtg
     5161 ctggcgcaga aagcggtgcg taccgaaggt aaacagtcac cattcagctt tgttctgcca
     5221 tttaacccgg cagatgttca gccgaacgcg cgtattctgt tgagtgcggc gattaccgtg
     5281 aatgacaaac tggtatttat taccgatacc gttcagccgg tgatcaacaa gggcggaact
     5341 aaagccgacc tgacattggt gccggtgcag caaaccgccg tgccggttca ggccagcggt
     5401 ggtgcaacga ctaccgtacc ttcgacttca ccaactcagg tgaatccgtc ttcggcagtt
     5461 ccagctccta cgcaatatta agcgacgtta accctctccg cccggagagg gttagtagtt
     5521 ccagcgataa cgctgcaagt cgatttgccc gcttcccgat accatcacac cttctgccag
     5581 taatgcctgt cgctgacgct gtaaatccgg tccggttagc gaaattgtgc cgtggcgatt
     5641 aaccacccgg tgccagggta aggtgctgcc ttcagggaga cgctttaaca caccgcccac
     5701 ctggcgcgcg gcgcggggcg atcccgccag tttcgccaca tcaccgtaag tggtgacata
     5761 gccttcggga atagcggcga cgatttgcca gacgcgttgg ggaaatgaat cttctttttc
     5821 catcttttct tcctgaggta atttttcagc ataatctgga aaaacgcccg agtgaagtcg
     5881 cattgcgcaa gaaaccagca tctggcacgc gatgggttgc aattagccgg ggcagcagtg
     5941 ataatgtgcc tgcgcgttgg ttctcaacgc tctcaatggg ggctctgttg gttctcccgc
     6001 aacgctactc tgtttaccag gtcaggtccg gaaggaagca gccaaggcag atgacgcgtg
     6061 tgccgggatg tagctggcag ggcccccacc catttctgcc tcccaccgtt tcgtcaaaaa
     6121 aacccaacat ggctaaactt taaccacaac tgacgtcgca agaattgtct ggctgcgcag
     6181 tacgcttcgg aggtatgtct gatgaagtat gttgatggtt ttgtggttgc cgttcctgcc
     6241 gataaaaagg atgcctatcg ggaaatggcc gctaaggctg cgccattgtt taaagagttt
     6301 ggcgcgcttc gtattgtcga atgctgggcc agcgatgtac cggatggcaa agtgaccgat
     6361 tttcgtatgg cggtgaaagc ggaagagaat gaagaggttg tctttagctg gattgaatac
     6421 ccttcaaaag aggtccgcga cgctgctaat caaaagatga tgtcggaccc acggatgaaa
     6481 gagttcggcg agtccatgcc gtttgacggc aagcgaatga tctatggcgg attcgagtca
     6541 atcatcgacg aataggtagc gtgacgggct gtgcggcgtg ccgtcagccc aaa
//
LOCUS       DAJVUY010000198         6390 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.199, whole genome shotgun sequence.
ACCESSION   DAJVUY010000198 DAJVUY010000000
VERSION     DAJVUY010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.199"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..206)
                     /locus_tag="OQQ72_003780"
     CDS             complement(<1..206)
                     /locus_tag="OQQ72_003780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311770.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="knotted carbamoyltransferase YgeW"
                     /protein_id="HCS2013347.1"
                     /translation="MKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAAL
                     KALRAENISTKVFNSGLGISVFRD"
     gene            685..2163
                     /locus_tag="OQQ72_003781"
     CDS             685..2163
                     /locus_tag="OQQ72_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HCS2013348.1"
                     /translation="MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAG
                     TGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTP
                     VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK
                     IFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH
                     GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC
                     RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE
                     QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR
                     EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
                     IEHWCITFYICIPVVWDRFILALLPMSSKYCVSIVGPETCAS"
     gene            2046..2462
                     /locus_tag="OQQ72_003782"
     CDS             2046..2462
                     /locus_tag="OQQ72_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004993937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial regulatory, Fis family protein"
                     /protein_id="HCS2013349.1"
                     /translation="MHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLME
                     YLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMI
                     REALSRHNSKKQVADELGIGIATLYRKIKKYELLNT"
     gene            complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ72_003783"
     CDS             complement(2502..2981)
                     /gene="xdhC"
                     /locus_tag="OQQ72_003783"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase iron sulfur-binding
                     subunit XdhC"
                     /protein_id="HCS2013350.1"
                     /translation="MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC
                     CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQ
                     CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK"
     gene            complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ72_003784"
     CDS             complement(2978..3856)
                     /gene="xdhB"
                     /locus_tag="OQQ72_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase FAD-binding subunit XdhB"
                     /protein_id="HCS2013351.1"
                     /translation="MFDFASYHRAATLADAINLLANNPQAKLLAGGTDVLIQLHHHND
                     RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAAMSIAG
                     LQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL
                     EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG
                     VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMT
                     KKVISEAVAAAGGKLQ"
     gene            complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ72_003785"
     CDS             complement(3867..6164)
                     /gene="xdhA"
                     /locus_tag="OQQ72_003785"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdenum-binding
                     subunit XdhA"
                     /protein_id="HCS2013352.1"
                     /translation="MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVR
                     SPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALL
                     TRHVRHHGDAIAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGN
                     LLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSST
                     QIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKV
                     SLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGN
                     KVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEI
                     RLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVA
                     CFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVS
                     DVRVISTQDTDVTPFDPGTFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNL
                     TLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVD
                     LTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGV
                     VRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA
                     TGVAINTLPLTPKRLYEEFHLAGLI"
BASE COUNT         1594 a         1511 c         1615 g         1670 t
ORIGIN      
        1 ttgtcgcgga atacggaaat acctaatcca ctattaaaga ctttggttga gatgttttca
       61 gcacgcagtg cttttaatgc tgcggcaacg tccagtactt gtttcagttc atctggcgtc
      121 tgttcccacg ttaacaaaaa atctttctcg tgaaggtgag aggtcagcga attgatatcc
      181 ttaatcagct cattaacagt tttcatcata aagtcccggt agtggaatga caggcaaagt
      241 ggtttatttc actgtgactt gccaaagtga ttggtgtttt cacagctata cctgggacta
      301 acaataagtg tgccagaatt atccgcgcgg ctgcaaaaga ctaatttgac ggataatgtg
      361 tggggttgat cacaaattga tgccagcttc tggttgtttg taaaatacga aaacgtttgg
      421 ctttttttat cgcgttattt atttgctgct aagtatcaga aataagataa aggggcaggc
      481 tatctctctt cagtttgata aactcaccgc cgtaattctc atattgatat agaaatgtga
      541 tatctcttcc ataatttcat tagaaaatga taaaaatctt atgtttttat caaagccaat
      601 ttcgcctgag ttaatatcat catgatctgt gaaccatcaa cgtcttcaat gatcgacttt
      661 taagtaagtc tggaaggtaa agctatggag cttgctacta cgcagtcagt attgatgcaa
      721 attcaaccga caattcagcg ttttgccaga atgcttgcca gcgttttgca gcttgaggtt
      781 gagatcgttg atgaaaactt gtgtcgcgtc gccggaacgg gcgcgtatgg gaagtttctt
      841 ggtcgccagt tgagcggcaa ctcacgcctg ctccgccacg tcctggaaac gaaaactgaa
      901 aaagttgtga cacagtctcg cttcgatccc ctttgcgaag gttgcgatag taaagaaaat
      961 tgccgtgaaa aagcatttct gggtacgcct gtcattttac aggatcgttg tgttggggtg
     1021 ataagtttga ttgccgttac ccacgagcaa caagagcata tcagtgataa tttacgcgaa
     1081 ttttctgatt atgttcgcca tatatccacc atttttgttt cgaaacttct ggaggatcag
     1141 gggccaggag ataacatcag taaaatattc gcgaccatga tcgataatat ggatcagggc
     1201 gtattagttg ttgatgatga aagtcgggtt cagtttgtta atcagactgc cttaaaaaca
     1261 cttggtgttg tacaaaataa tattattggg aaacctatcc gtttcagacc attaacattt
     1321 gagagtaatt ttactcatgg acatatgcag catattgttt cgtgggacga taaaagtgaa
     1381 ttaatcattg gtcaattgca taacattcag ggccgacaat tatttttaat ggcatttcac
     1441 caatcgcata ccagtttttc tgtagcaaat gcacctgatg aaccacatat tgaacaattg
     1501 gttggcgagt gccgtgttat gcggcaatta aaacgactca ttagccgtat tgcacccagc
     1561 ccatccagcg ttatggtggt tggtgaaagc ggcacgggta aagaagtcgt cgcccgagca
     1621 atccataagt tgagcggaag acggaataaa ccctttattg ctatcaactg tgccgcgatt
     1681 ccggagcagc ttctggaaag cgaactgttc ggttatgtta aaggcgcatt tactggcgct
     1741 tctgccaacg gtaaaacagg gttgattcag gcggcgaata cgggcacgct gtttctcgat
     1801 gaaataggtg atatgccatt aatgttgcag gctaaattac tgcgcgctat tgaggcgcgt
     1861 gaaattctgc cgattggtgc cagtagccca atacaagtcg acattcgcat catttctgca
     1921 actaatcaga atttggccca gttcattgcc gaaggtaaat tccgcgaaga tctcttctac
     1981 cgacttaatg ttatcccgat aactctgcca ccgctgcgtg aacgtcagga agatattgaa
     2041 cattggtgca ttacttttta catctgcata cccgtcgtct gggatcggtt tatcctggca
     2101 ttgctcccga tgtcgtcgaa atattgcgta agcatcgttg gcccggaaac ctgcgcgagt
     2161 taagcaattt gatggaatat ctggttaacg tagttccttc aggtgaagtt atcgacagca
     2221 cgctattgcc gccaaatctg ctgaataatg gcacaacgga gcaaagtgat gtaacagagg
     2281 tcagtgaggc gcacctgtca ctcgatgatg cgggcggcac ggcgctggag gagatggaaa
     2341 agcaaatgat ccgcgaggcg ctttcacgtc ataacagcaa gaagcaagtt gctgatgaac
     2401 tgggcatcgg cattgctacg ctctatcgca agattaagaa atatgagttg ttaaacacat
     2461 aacctcagtg aatccggcct gaattcaggc cggatatcct tttacttcgt tttctcgcaa
     2521 tccagaactg tatttacaat catctgatac cccgtgcagc gacaaagatt tcccgccagt
     2581 ccgcgacgaa tttccgtaat ggttaatggc ttctcgcgtg gtttcgccag cattgccgtg
     2641 gtagccataa tcaggccagg cgtacaaaac ccgcactgca ctgcgccgga tttcgcataa
     2701 gcctgctgaa catgagaaag ttttccgcct ttcgcttcac cttccagcgt gcggatctct
     2761 tttccttcag cccaggcggc aaggtataag caactgtcta ttgctgtgcc gtcgaccaac
     2821 accgtacagg caccacattc acccacgcag cacccttgtt tgacacttag cagtccttgt
     2881 tcgcggagta attccgagag cggcgtgcct ggtgcggcgt gaagctgaaa aggcatcccg
     2941 ttaatggtgc attcgatggt aattgtttcg ctgtgattca ttgcaatttt ccccccgccg
     3001 cggcgacggc ttcgctaatc acttttttgg tcatcgtctg gatgagatgc agacgaaact
     3061 ctttactggc ccgccatgaa gaacgcgggg cgacatcttg caggacagat tcgctgatag
     3121 cttccagcgt ttgcaggttt aatggcgcat tttgtgcagt ctgttcggca tgttggcagc
     3181 gaatcggcgt tggcgcggca acaccaaatg ccaggcgtaa ttcgctgaaa ttgccgttat
     3241 ccagtcggca atgtgcggcg cagccaatcg ttgaaatatc cattgcgtcg cgcatggcat
     3301 atttaaaatg cgcgctgccc gcgtgttctt tcggctgtgg cggaaaatga aaggcgacga
     3361 ggatttcgtc atgctcaaga gacactttgc ccggcccggt gtgaaagcca ttaatcggga
     3421 cgaaacgaac accgcgcggg gagtggatct ccagtttcgc gtcataaatt agcgttggcg
     3481 tggcagaatc tgcgctggtg gcaccgttgc aaatatttcc accgtaggta gcgacgttac
     3541 ggatctgcag tccagcaatg gacatggccg cagcacataa cgccgggaga tgacgttgag
     3601 ttataggatc ttctattagc tgggtaaatg tcgttgcaga gccgatacgt agcgagccat
     3661 cttccgccag cgtaattccc cgcagctccg ccagattatg aatatcaaca atatggcgat
     3721 aacggtcatt gtgatggtgg agctgaatca gtacgtcagt gccaccggcg agcagtttgg
     3781 cctgcgggtt gttagccagc aggttgatgg catcggcaag ggttgctgcg cgatggtaag
     3841 aagcaaaatc aaacatgatg ttatcctcaa atcaatcctg ccagatggaa ctcttcatat
     3901 aaccgttttg gcgtcagcgg cagtgtattg attgcaacac cggtagccat cttcaccgcg
     3961 ttacgaatag cagcggcaac aggaattatt ggtggctcac ccagtgactt atgtccgtat
     4021 gcggattgcg gctcattgat ttcgacgaac gcgctttcca gttgtggcag atccggcatg
     4081 gtcggcattt tgtaatccag cagattgggg ttacggacca cgccgctttt agcatcgatg
     4141 atcatctctt caaatagcgc ccagccaatg cccattccca ttccgccgtg tacctgacct
     4201 tctgccagca gtggattaag aatatgccct gaatcatgaa cgttgaggat gcggttgatg
     4261 gtgactttgc acagcgcaat atcgaccgtc agatcaacaa aggtacagcc aaacgccggt
     4321 gggttagtgg tggttttgat ggagctttca gcagagagct gcccgccgcg ttcagggtgg
     4381 tagaaagcgt ccatcgccaa atcttttaac gacattaacg gctcttccgg tcgttcaacc
     4441 agcacgatat ggccttttat cagggtcaga ttcatcgctg actgatgtag catgactgcg
     4501 gcgtgagcga tgattttctc ttttaataat agtgccgcac tgcgcagcgc aggcgcggca
     4561 acatagctct ggcgtgaggc aaatgtgccg ggatcgaacg gcgtaacgtc ggtatcttga
     4621 gttgaaataa cgcgaacgtc gctgaccgga acccccacgg tttctgccac catttgcgag
     4681 aagacggtgt cggcaccctg accgatttcc gtcgcgccgc tttgcacgtt gatggttcca
     4741 tcctgattca tcagaaggcg cgcgcctgct atttctacgc cgacaggcca ggtgttagag
     4801 gtgtagctaa aacaggcgac gccaacgccg cggcgcaaat tgccttgctg gttctggcat
     4861 tctgcacggc gtttttccca ttcaaagatt ttccggcctt tttcaagaca ctccggcaac
     4921 cctgcgctgt aaatacgttt gcccgtgagc ggattagcat ctccttcgcg ggcggcgttg
     4981 cgtaaacgaa tttcaacagg atcaatacct aacgctgtcg cggcgtcatc aagcatagac
     5041 tcaacggcaa atacgacttg tggcgcgcca taaccacgca tcgcaccagc cgaggggagg
     5101 ttggtatagc aggtctttga actgtaagcg taggcacaac gaggataaag gtaagcgact
     5161 ttattccccc ccgcagaagc gatggagtgc ccgtgagatg cataagcgcc ggtgttagac
     5221 agaacatcca gactataacc tttcaatgtt ccgtcgcggt tcacgcccat ttgcccgtca
     5281 atggtaaaag cgtggcgggt acgggttgcg aggaaacact cttcacggct aagggaaact
     5341 ttcaccggaa tgccgccaag cttgctggtc aggaatgccg ccattggctc ttccagtaca
     5401 tcctgtttat taccaaaacc gccaccgaca aatggtttga tgactcgtac gcatgaccag
     5461 ggaatatcca gcgcctgacc aaccacgcgg cgaacaatgt gcgggatctg ggtgctggaa
     5521 acgatggtaa ttcgcgagtc atcctccatc cacgccagcg atgttacgct ttccatgtga
     5581 caatgttgaa taacgggggt ctgatagtgc ccctgtacct ggtagtcggc ggcatcgatt
     5641 gtttgttgga cattacccgt cgacatcgtg ctttgtttca gtaaattgcc accgttatgg
     5701 attggtgcag cgtcttctgc cagcgccgct tctggcgtgg tgataacggg taattcttgc
     5761 cactcaatgc tgaccaattg cgccgctttt tctgccgtga gttcatcgcg ggccacgacg
     5821 atggcaatgg cgtcaccatg atgacgaaca tggcgagtta gcagtgcgcg atcggcggta
     5881 tcgcgcttgt tttcgtcaag tgtccaggca tgcccagctg tagcgaatgg aatatcaggc
     5941 acatcttccc aggtaaaaat cgccagtacg cccggcaaac ttctggcttg ttcatcatta
     6001 atacttacgg cataaccatg tgcgataggg ctacgtacat atttcgcata acacatgccc
     6061 gccataacat aatcgtcagt atatcgtgcc cgcccggtga ccttagcaat ggcatcgacg
     6121 cgcatgcatg attcacccgt agcggttgct tcccgcgctt ccatagaaat cccctcgatt
     6181 tgaacatttg gttcttatgg caaagattta gtctaagcag gcaagattta cgccagaaac
     6241 gacgataagc gttaggggag gtaggaagtg tgatgacgtt aaaaaaacac agatatgata
     6301 cgaaacagga gtctgaatag gggcagtgat acgtatcaat atgagtggcg ataaaatcaa
     6361 tgtgataaat tgggattatt acgcatcagg
//
LOCUS       DAJVUY010000199         6337 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.200, whole genome shotgun sequence.
ACCESSION   DAJVUY010000199 DAJVUY010000000
VERSION     DAJVUY010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.200"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            30..152
                     /locus_tag="OQQ72_003786"
     CDS             30..152
                     /locus_tag="OQQ72_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HCS2013353.1"
                     /translation="MPKKMRTTRNLLLMATLLGSALFARAADKEMTIGAIYLDT"
     gene            168..1013
                     /locus_tag="OQQ72_003787"
     CDS             168..1013
                     /locus_tag="OQQ72_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS2013354.1"
                     /translation="MRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDA
                     IILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLSN
                     AAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDK
                     AISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELE
                     NNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATH
                     VDGLP"
     gene            1036..2547
                     /locus_tag="OQQ72_003788"
     CDS             1036..2547
                     /locus_tag="OQQ72_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS2013355.1"
                     /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK
                     NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG
                     LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI
                     ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASC
                     ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP
                     KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLETYEQGEIVINGEKITRPDYGDM
                     LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMT
                     VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL
                     AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH"
     gene            2572..3570
                     /locus_tag="OQQ72_003789"
     CDS             2572..3570
                     /locus_tag="OQQ72_003789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS2013356.1"
                     /translation="MSASSLSLPLGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA
                     PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV
                     PLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID
                     ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN
                     VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG
                     SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR"
     gene            3603..4697
                     /locus_tag="OQQ72_003790"
     CDS             3603..4697
                     /locus_tag="OQQ72_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS2013357.1"
                     /translation="MKINRIVNEGFMKTMLAAYLPGNSTVDLREVAVPTPGINQVLIK
                     MKSSGICGSDVHYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDR
                     VLVYHISGCGFCPNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALS
                     YEDGAFISCGVGTAYEGILRGEVSGSDNMLVAGLGPVGMMAMMLAKGRGAKRIIGVDM
                     LPERLAMAKQLGVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALRSTA
                     DWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAI
                     THRFSLEQAGDAYALMASGKCGKVVINFPD"
     gene            4709..5581
                     /locus_tag="OQQ72_003791"
     CDS             4709..5581
                     /locus_tag="OQQ72_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS2013358.1"
                     /translation="MTIYTLSHGPLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD
                     ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC
                     LVYEHRRGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ
                     AQASGYWLEREQWLAGEFCEQLPQELDFNQLAPLPRQWVNNGFAGWNGQARIEQPQEG
                     YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG
                     ESTTSEMSLRVEWL"
     gene            complement(5629..6051)
                     /locus_tag="OQQ72_003792"
     CDS             complement(5629..6051)
                     /locus_tag="OQQ72_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS2013359.1"
                     /translation="MNTLRYFDFGAARPVLLLIARIAVVLIFIILGFPKMMGFDGTVQ
                     YMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDM
                     TGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR"
     gene            complement(6148..>6337)
                     /locus_tag="OQQ72_003793"
     CDS             complement(6148..>6337)
                     /locus_tag="OQQ72_003793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenoxybenzoate dioxygenase"
                     /protein_id="HCS2013360.1"
                     /translation="WLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSG
                     KTFDAKLLIDENIALKSL"
BASE COUNT         1469 a         1515 c         1834 g         1519 t
ORIGIN      
        1 ttgttaataa aaaccctaca ggaggcacta tgcctaaaaa aatgagaaca acccgtaatc
       61 tattattaat ggctacgcta ttaggtagcg cactatttgc cagggctgcg gataaagaaa
      121 tgaccattgg tgcaatatac cttgatacct agggatatta cgctggagtg cgtcagggcg
      181 ttcaggatgc ggcaaaagat tcttcagtac aggtacagtt aattgaaact aacgcccagg
      241 gtgatatttc gaaagaaagt acctttgttg ataccctcgt ggcgcgtaat gtcgatgcca
      301 ttattttatc ggcagtgtct gaaaatggca gtagccgtac cgttcgtcgc gccagtgaag
      361 cgggtattcc ggtgatttgc tacaacacct gtattaatca aaagggtgtc gataaatatg
      421 tctcggcgta tctggtcggc gatccactgg aatttggtaa aaaactgagt aacgctgccg
      481 ccgattattt tattgccaat aaaattgacc agccgaaaat tgccgtcatc aattgcgaag
      541 cctttgaagt ttgtgtgcag cgacgtaaag gatttgaaga agtattaaaa tcccgcgttc
      601 ccggcgcgca aattgtcgct aatcaggaag ggactgtttt agataaagcg atttccgttg
      661 gtgaaaaact gattatctcc acgccggatc tcaacgccat tatgggggag tcgggcggtg
      721 cgacactcgg cgcggtaaaa gcggtacgta atcaaaatca ggccggaaaa attgctgttt
      781 tcggttcgga tatgacaacc gaaattgctc aggagctgga aaacaatcag gtgctgaaag
      841 cggtagtgga tatttccggt aagaaaatgg gcaatgctgt tttcgcgcaa acattgaagg
      901 ttatcaataa acaagccgac ggtgaaaaag tgattcaggt gccaatcgat ctctatacca
      961 aaacggaaga tggtaaacag tggctggcaa cgcacgttga tggtctgccc taatcgctga
     1021 ttcgcagagg tccctatgtt cacggcaaca gaggcagtcc cggtagcaaa agtggtggca
     1081 ggaaataagc gttaccccgg cgtcgttgcg ctggataacg ttaacttcac gctcaataaa
     1141 ggcgaagttc gtgcgctgtt aggtaaaaac ggcgcgggca aatcgactct cattcgaatg
     1201 cttaccggca gcgaacgccc ggatagcggt gatatctgga ttggcgagac gcgactggaa
     1261 ggtgacgaag ctacgttgac tcgccgtgcc gctgaactgg gggttcgtgc ggtttatcag
     1321 gaattaagtc tggtggaagg gctgacggtg gcagaaaacc tctgccttgg tcaatggcct
     1381 cgccgcaacg gcatgattga ttacctgcaa atggcgcagg atgcccaacg ttgcttacag
     1441 gcgctgggcg ttgacgttag tcctgaacaa cttgtttcaa cgctaagccc ggcgcaaaag
     1501 caactggtgg aaattgcacg ggtgatgaag ggcgagccgc gcgtggtcat tcttgatgaa
     1561 cccaccagct cgcttgccag tgcagaagtt gaactggtga tcagtgcggt gaaaaagatg
     1621 tcggcactgg gcgtggcggt gatttatgtc agccaccgga tggaagaaat ccgccgcatt
     1681 gcctcctgtg ccaccgttat gcgcgatggt caggtggcgg gcgatgtgat gctcgaaaac
     1741 acctccacgc atcatattgt gtcgctaatg ctagggcgtg atcacgttga tattgcgccg
     1801 gttgcccctc aggaaattgt ggatcaggcc gtactggaag tccgtgcgtt acgccataag
     1861 cccaagctgg aggatatcag ctttacgtta cgtcgcggcg aagtgcttgg cattgctggc
     1921 ctgctggggg cagggcgcag tgaattgctg aaggcgattg ttgggctgga gacgtatgaa
     1981 cagggcgaaa ttgttatcaa cggcgagaaa atcacgcgcc ccgattacgg cgacatgctg
     2041 aaacgcggca ttggctatac gccagaaaac cgcaaagaag cggggatcat tccctggttg
     2101 ggcgttgacg aaaatacagt gctgaccaat cggcaaaaaa tcagcgccaa cggagtgctg
     2161 caatggtcca ccatccgccg cctgaccgaa gaggtgatgc agcggatgac ggtcaaggcc
     2221 gccagtagcg aaacgcccat cggcacgctt tctggtggca atcagcaaaa agtggtgatc
     2281 ggtcgttggg tctatgccgc cagccagatt ttgttgctcg acgagccaac gcgcggcgtc
     2341 gatatcgaag ccaaacagca gatttaccgt attgtccgtg agctggctgc cgaaggaaaa
     2401 agcgtggtgt ttatctccag tgaagtggag gagttgccgc tggtgtgcga ccgcatcctg
     2461 ttgttacagc acggtacgtt ctcgcaggag tttcactcgc cggtcaatgt ggatgagctg
     2521 atgtccgcca ttctgtctgt gcactgatga attttaccga ggaacctgaa gatgtctgct
     2581 tcgtcattat cattgccgct gggcaagagc gtctcgctca aacaatttgt cagtcgccat
     2641 attaatgaga tcggtttgct ggtggtaatc gccattcttt atctggtctt ctccctgaat
     2701 gcgcctggct ttatctcatt gaataaccag atgaacgtgc ttcgcgatgc tgccaccatc
     2761 gggatcgccg cctgggcaat gacgctgatt attatctccg gtgaaattga tgtcagcgtt
     2821 ggaccgatgg tggcttttgt ctcggtgtgc ctggcatttt tgctgcaatt tgaagttccg
     2881 ttggcgattg cttgtctgct ggtgttgctg ttaggcgcgc tgatgggaac gctcgccggg
     2941 gtgctgcgcg gcgtgtttaa cgtgcccagt ttcgttgcca cactggggct gtggagcgcc
     3001 ctgcgcggaa tggggctgtt tatgaccaac gcactgccag tgccgattga cgaaaacgag
     3061 gtgctggact ggctgggcgg acaatttctc ggtgtgccag tatccgcgct gatcatgatg
     3121 gtgttgtttg cgctgtttgt gttcattagc cgaaaaaccg ccttcgggcg ctcggttttt
     3181 gccgttggcg gtaatgccac ggcggcgcag ttgtgcggta ttaacgttcg tcgagtgcgc
     3241 attcttatct ttaccctttc gggattatta gcggcggtga ccggcatttt gctggcggca
     3301 cgcctcggtt ccggtaacgc aggtgccgca aacggtctgg agtttgacgt catcgccgcg
     3361 gtcgtggtcg gcggtacggc actttccggc ggtcgcggtt ccctgttcgg tacattgctt
     3421 ggtgtgctgg tgattacgct aatcggtaac ggtctggtgc tgctcggtat taactccttt
     3481 ttccagcagg tggtacgcgg cgtcatcatc gtggtggcgg tgctggcgaa tatcttgctg
     3541 acccagcgaa gcagtaaagc gaaacgctaa accttaacgc ccctggcgcg ggtgcggcag
     3601 ggatgaaaat taatcgtatt gttaatgagg gatttatgaa aacgatgctg gcagcttatt
     3661 taccaggaaa ttcaaccgtc gatctgcggg aagttgcggt gccgacgccg gggattaacc
     3721 aggtactgat caaaatgaaa tcctccggga tttgcggaag cgatgtccac tatatctatc
     3781 atcaacaccg tgccacggcg gcggcacccg ataaaccgtt ataccaggga tttatcaacg
     3841 gtcatgaacc atgcgggcag attgtggcga tggggcaagg ctgtcgccat tttaaagagg
     3901 gtgatcgcgt gctggtgtat cacatttctg gctgtggttt ttgcccgaac tgccgccgcg
     3961 gctttcctat ctcttgtact ggcaaaggaa aagcggctta cggctggcag cgtgacggcg
     4021 gtcatgccga atacttgctg gcggaagaaa aagatctgat cctcctgccg gatgcgctta
     4081 gctacgaaga tggtgcgttt atcagttgcg gcgttggtac agcgtatgaa ggaattttgc
     4141 gcggcgaagt ttccggcagt gataacatgc tggtggccgg tctggggcca gtcggcatga
     4201 tggcgatgat gctggcgaaa ggtcgcggtg caaaacggat catcggcgtt gatatgctgc
     4261 cggaacgtct ggcgatggca aaacagttag gggtgatgga tcacggctat ttagcaacca
     4321 ccgaaggtct gccgcagatt atcgccgaac tcacccacgg tggcgcggat gttgcgctcg
     4381 attgttctgg taatgccgca ggtcgcttgc tggcactgcg atccaccgct gattggggac
     4441 gggtggttta catcggagaa accggaaaag tggagttcga ggtcagcgcc gatctgatgc
     4501 accatcaacg gcggattatc ggctcctggg tgaccagtct gttccatatg gaaaaatgcg
     4561 cccatgatct gacggactgg aaactgtggc cgcgtaacgc cattacccat cgcttctcgc
     4621 tggaacaggc tggagatgcc tatgcgctga tggcgagcgg caaatgcggg aaagttgtga
     4681 ttaacttccc ggattaagga gttagcggat gaccatctat accttatctc acggaccgct
     4741 aaagctggat gtctctgacc agggcggcgt aatcgaaggc ttctggcgtg acacgacgcc
     4801 gcttttacgt cctggtaaaa aaagcggtgt ggcaaccgat gcttcctgtt ttccgctggt
     4861 gccgtttgca aaccgggtga gcggcaatcg ttttgtctgg caggggcgtg agtatcaact
     4921 gcaaccgaat gttgagtggg atgcgcacta tctacacggc gatggctggc tgggcgagtg
     4981 gcaatgtgtc tcgcacagcg atgatagctt gtgtctggtg tatgaacatc gcagaggtgt
     5041 ctatcactat cgggtaagtc aggcgtttca tttaacggcg gatacgctga cggtgacgct
     5101 ctctgtcacc aatcaagggg cagagacgct gccatttggt accggctggc atccttattt
     5161 tccgttgtca ccacaaacgc ggattcaggc gcaggcgagc ggttactggc tggagcggga
     5221 gcagtggctg gcgggtgagt tttgcgagca gctaccgcag gaactggatt ttaaccagct
     5281 cgcgccgttg ccgcgccagt gggtgaacaa tggttttgcc ggatggaatg gtcaggcccg
     5341 catcgagcag ccgcaggaag gttatgccat catcatggaa acgacgccac ctgcaccgtg
     5401 ttatttcatc tttgtttccg accctgcgtt tgataaagga tatgcgtttg atttcttctg
     5461 tctggaaccg atgagccatg cgccggatga tcatcatcgc ccggaagggg gtgatctcat
     5521 tgcgctagca ccaggggaat caacaacttc agagatgtcg ttgcgggtag agtggctgta
     5581 atttattaaa tgccggataa ggcgttcacg ccgcatccgg catctttcct aacgccgatc
     5641 gagagaaatt gcccccggcc cggtaattgc caatagcaag aacgcgccag cgatactgac
     5701 attcttccag aaattaatca tatttggccc aaccgcatcg ccggtcatat cccagtaatg
     5761 gtgaccaatc accgccgtac ccagcgtgta gaaaataaac agcaccgcca gcggacgggt
     5821 gaaaaagcca agcacgatta atatcgcggc gggcacttcc ataactaccg caataatcgc
     5881 tgccagcatc ggcattggcg cgcccaacga ggccatatat tggaccgtac cgtcaaagcc
     5941 catcattttg ggaaaaccca aaataatgaa aattaagacc acggcgatac gggcaattaa
     6001 taacaaaacg gggcgggcag ctccaaaatc aaaataacgt agtgtgttca taaccaatcc
     6061 ctttgcaaga taatgtgatt taaacgtaat acacactctt gcacctcgcc acgccccagg
     6121 cgttgagata ttcgctaatt atcctggtta cagtgattta agcgcgatgt tctcatctat
     6181 cagcagtttc gcatcaaacg ttttgccgct ctggatccat ttgcgaattg ggcgaatctc
     6241 acgcccctga ttcagcgtga ccgcaccgat aagcacgccg ttttgcagat taaaccaaat
     6301 cgccttctga gtttccgggt tgccacgaca aagccag
//
LOCUS       DAJVUY010000200         6323 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.201, whole genome shotgun sequence.
ACCESSION   DAJVUY010000200 DAJVUY010000000
VERSION     DAJVUY010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6323
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.201"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            19..144
                     /locus_tag="OQQ72_003794"
     CDS             19..144
                     /locus_tag="OQQ72_003794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001397278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS2013361.1"
                     /translation="MIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL"
     gene            233..1693
                     /locus_tag="OQQ72_003795"
     CDS             233..1693
                     /locus_tag="OQQ72_003795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS2013362.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYKVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1729..1932)
                     /gene="ydfZ"
                     /locus_tag="OQQ72_003796"
     CDS             complement(1729..1932)
                     /gene="ydfZ"
                     /locus_tag="OQQ72_003796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HCS2013363.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCEEKLAPLDLIRLGMN"
     gene            complement(1929..2795)
                     /locus_tag="OQQ72_003797"
     CDS             complement(1929..2795)
                     /locus_tag="OQQ72_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS2013364.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA
                     SMITESQCYQLEQNLHQQRIAIEHKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK
                     ATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVARSA
                     RKTATGLAKSNSFTLIPSGMRGFSPRLTAHACIKKDVSLIKNKKYFTRQEYLYCARYV
                     GFDCKSERRKHL"
     gene            complement(2884..3630)
                     /gene="ydfG"
                     /locus_tag="OQQ72_003798"
     CDS             complement(2884..3630)
                     /gene="ydfG"
                     /locus_tag="OQQ72_003798"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HCS2013365.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3767..5812
                     /gene="dcp"
                     /locus_tag="OQQ72_003799"
     CDS             3767..5812
                     /gene="dcp"
                     /locus_tag="OQQ72_003799"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HCS2013366.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     GFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5857..>6323)
                     /locus_tag="OQQ72_003800"
     CDS             complement(5857..>6323)
                     /locus_tag="OQQ72_003800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HCS2013367.1"
                     /translation="NLTSALSQRLIADQLRLTTAESCTGGKLASALCAAEDTPKFYGA
                     GFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAIERADADVSIAITGYGGLE
                     GGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAVRFAHVQLLQLLL"
BASE COUNT         1582 a         1510 c         1627 g         1604 t
ORIGIN      
        1 atgatcatgg catattcagt gattggttta atctctgcgc tgaaaatgcc agaggtgaaa
       61 gaccgtgatt taagtgcgct ggaagacgct gcggaagatc aaccgcgtgt tgtaagagct
      121 gcgcaacctt ccagaagtct gtaaaccctc aatcccttct cttaccggag aggggatttt
      181 tattcatata acaaaacata tagcttgcca tatttaaatt taaggaattg ttatgggaaa
      241 taatttgtta tcagcaaaag cgacactccc tgtttatgat cgtaataacc tggccccaag
      301 aattgttcat ttaggctttg gtgcatttca ccgtgcgcat cagggcgtgt atgccgatat
      361 tcttgctaca gaacatttca gtgactgggg atattataag gtcaacttaa tcggcggcga
      421 acagcaaatt gccgatttac aacagcaaga taatctttat accgttgcgg aaatgtcggc
      481 cgatgcgtgg acggctcgcg tcgttggcgt cgttaaaaaa gccttgcacg tacagatgga
      541 tggcttagaa accgtgttgg ctgcgatgtg tgaaccgcaa atcgcgattg tctctctgac
      601 aatcaccgaa aaagggtatt tccactctcc ggcgaccgga cagttaatgc tcgatcaccc
      661 gatggtcgct gccgacgtgc aaaatcccca ccagccgaaa acagcaacag gggtgattgt
      721 tgaggcgctg gcccgccgta aagcggcagg acttcccgca tttaccgtca tgtcatgtga
      781 caacatgcca gaaaacggtc atgttatgcg tgacgttgtc acttcatacg cgaaagctgt
      841 tgatgtaaaa ctggcacaat ggatcgaaga taacgtgact ttcccatcaa caatggtgga
      901 ccgtattgtg cccgcagtga cagaggatac gctggcgaaa atcgaacaac ttaccggtgt
      961 gcgcgatcct gcgggcgttg cctgtgaacc tttccgccag tgggtaatag aagataactt
     1021 tgttgccgga cgtccagaat gggaaaaagc gggagccgaa ctggttagtg atgtgctgcc
     1081 ttatgaagag atgaagttgc gcatgctcaa cggcagtcat tcattcctgg cgtatttggg
     1141 ttatcttgcc ggatatcagc acattaatga ctgcatggaa gatgaacatt atcgttatgc
     1201 ggcgtatggc ttgatgttgc aggaacaagc gccgacgctg aaagtgcagg gcgttgattt
     1261 gcaagattac gctaaccgat taattgaacg ctatagcaat ccggcgttac gtcatcgaac
     1321 ctggcagatt gcgatggatg gtagccagaa attgccacag cggatgttgg attctgttcg
     1381 ctggcatctg gcgcatgaca gcaagttcga tctgctggcg ctgggcgtcg cgggttggat
     1441 gcgttatgtc ggtggtgttg atgaacaggg aaatccgata gaaatcagtg acccactgtt
     1501 acctgttatt cagaaggctg tacaaagtag tgccgaaggg aaagcgcgcg tccagtcatt
     1561 gctggcgatt aaggcaatct ttggtgatga tttgccagac aatagcttgt ttactgcaaa
     1621 agtgacggaa gcgtacttgt ctttattagc gcatggcgcg aaagcgaccg tggcgaaata
     1681 ttccgtgaag taaaaaaagc aatgccgcca tcggcggcat tcacacactt agttcatgcc
     1741 gagacgaatc aggtccagag gtgccagttt ctcttcacaa ccttcaacaa ctacggtttt
     1801 tccgcggcgg atttgctcag cggtcagacc ttcagtatca atcgacagga tcttgccagt
     1861 gtgaccggtg ccgctaacca taacacggct gccagtggtg attgcgttac ggttacgatc
     1921 gtaggtcgtc ataggtgttt tctcctttct gatttacagt cgaagcccac gtaacgggcg
     1981 caatataaat actcctgtcg agtgaaatat tttttgtttt tgatcaagct cacatctttt
     2041 ttgatgcatg catgagccgt aaggcggggg gaaaagcctc tcatcccgga tgggatgaga
     2101 gtaaatgaat tactcttcgc taaaccagtc gctgttttcc tggcggatct ggccacggat
     2161 tcgctgattt cctgcaaatg ttgcgtcatt gcacgttcta ccgcatcgcc atcacgtttt
     2221 tgcagggcag agaaaatatc aagatgctgg cgtaacagca tttctggtgg agaaacatgg
     2281 tcgaaactca tatagcgcac gcgatcaacg gtcgctttca ggttctcaat ggtatcccac
     2341 gccagttgac agtcggcaat ctgcgtcagg agttgatgga agttgtcatc aagttcaaaa
     2401 aaatcatcca gttgcttgtg ctcaatggca atgcgttgct ggtgaagatt ttgttccagt
     2461 tggtagcact ggctttcggt aatcatgctc gccgcccgac gcgccaccgc gcactcaatg
     2521 gcctgacgga taaaactgcc gttgcgcacc tgggccatgg aaattttgtt gacgtagctg
     2581 ccacgctgtg gacgaatttg aatcaggccg ttttccgcca gtttaataaa ggcttcacga
     2641 accggctggc gtgacacatt gaaacgaaca gaaacttctt tttccgacaa cggtgtgcct
     2701 ggagcaatca ggcaatggac aatgtcgcga cgaaggatac gataaatttg ctgattgaca
     2761 ggctgtgtgg gattaagttg cgtttcgacg gtcattcgtt cttgcttgtg agtgagttaa
     2821 ctgcatgagt ctaccacttt tttgtgacaa gcaataaccc ggcagttacg ccgggtataa
     2881 aaattactga cggtggacat tcagtccggc atagctttgg gtaaccggca tcatttccag
     2941 ggtattgata ttgacgtgag caggcagcgt tgacacccac caaacggctt cgctgacatc
     3001 ttctggcgtc aatgcaacgg tattttgata ggttttttcc gctttaccgt catcgccttt
     3061 aaagcggaca ttggaaaact cggtgccacc caccagaccc ggttcgatgt cggtgacgcg
     3121 caccgccgta ccatgcaggt ccgtacgcag attcaggcta aactgacgaa caaacgcttt
     3181 cgtcgcaccg taaacgttac caccggcata aggccagcta cctgccgttg agccaatgtt
     3241 aataatatga ccatgattac gttcaaccat acccggtaag acggcgcgcg tcatatatac
     3301 caggcctttg ttgttggtat caatcatcgt ttcccagtct tcaacgctgg ctttatgcgc
     3361 aggctccatg cccaacgcca ggccggcatt atttaccagg atatcaatat tgcaccactc
     3421 ggcaggaagc gatgccagca tctcttcaat agcggcgcgg ttgcgaacgt ccagttgggc
     3481 gatgtacaga ttatctccca gttcgtcttt taactcctgc aaccgttcct ggcgacggcc
     3541 agtggcgata actttatgcc cttgttgaat aaaacgacga gtaatgcatt caccaaaacc
     3601 tgccgttgct ccagttacta aaacgatcat ctcactgttc ctcaacgctt ttgtgtgtca
     3661 ataacatagc acgtgatgct taagagcggg taatactggt ttgtaagatt gcactccgtt
     3721 atcagtaagc ctacgctatg gaacacctcg cgttcaggag aagaaaatga caacaatgaa
     3781 tcctttcctt gtgcaaagca cactaccgta tctggctccc cattttgatc aaattgccaa
     3841 tcatcactat cgcccggcat tcgatgaggg aatgcagcaa aagcgggcag aaattgctgc
     3901 catcgcgctt aacccgcaaa cgcctgattt caacaatact attctggcac tggaacaaag
     3961 cggagaatta cttacccgcg ttaccagcgt cttttttgcg atgactgcgg cgcataccaa
     4021 tgatgaatta cagcgtcttg atgaacagtt ttccgctgaa ctggcggaac tggctaatga
     4081 tatctatctg aacggtgaat tattcgcgcg ggtagatgct gtctggcagc gccgtgaatc
     4141 cctggggctt gatagtgaat ccatccgcct ggtggaggtg attcatcaac gttttgtcct
     4201 tgccggagcc aaacttgcgc aagctgataa agcaaaatta aaagtactga atacagaagc
     4261 tgcgaccctg accagccagt ttaaccagcg attactggca gcaaataaat ccggcggtct
     4321 ggttgtgaac gatatcgcgc agctggcagg aatgagtgag caagagattg cgctggcggc
     4381 agaggcggct cgcgagaaag gtctggataa caaatggctg attccgctgc tgaataccac
     4441 ccaacaaccg gcgcttgccg agatgcgcga tcgtgcgacg cgtgaaaaac tgtttattgc
     4501 gggctggacg cgagcggaaa aaaatgatgc caatgatacc cgcgctatca ttcaacgtct
     4561 ggtagagatt cgcgcacagc aggcgaaact gcttggtttt cctcattatg ccgcatggaa
     4621 aatcgccgat cagatggcaa aaacgccaga agcagcactc aactttatgc gggaaattgt
     4681 tccagcggcg cgtcaacgtg ctagcgatga attagcctcc atacaggcgg ttatcgataa
     4741 gcagcaaggc gggtttagcg cgcagccgtg ggactgggca ttttatgccg aacaggtacg
     4801 gcgggagaaa tttgatcttg atgaggcgca gctcaagcca tattttgaat taaacacggt
     4861 gttgaatgaa ggtgtattct ggaccgcgaa tcagctcttc ggtattaagt ttgtcgaacg
     4921 ttttgatatt cctgtctacc atcctgacgt tcgtgtgtgg gaaatttttg atcataatgg
     4981 cgtgggactg gcgttatttt acggtgattt cttcgcccgt gattcaaaaa gcggcggtgc
     5041 atggatgggc aattttgttg agcaatcaac gcttaatgaa acgcatccgg taatttataa
     5101 cgtttgcaat tatcagaaac ccgctgccgg tgagcctgcg ttgttactct gggatgatgt
     5161 cataacctta ttccatgaat ttggtcatac gctgcacggc ctttttgccc gccagcgtta
     5221 tgccacgctt tccggcacca acacgccgcg tgattttgtc gaatttccgt cgcaaatcaa
     5281 cgaacactgg gcaacgcatc cgcaggtatt cgctcgctac gcccggcatt atcagagcgg
     5341 ggcagcaatg cctgacgaac tgcaacagaa aatgcgtaat gccagcctgt tcaacaaagg
     5401 gtatgagatg agcgaactgc ttagcgccgc acttctcgat atgcgctggc attgcctgga
     5461 agaaaacgaa gcaatgcagg atgtcgatga ttttgaattg cgggcgctgg tggcggaaaa
     5521 tatggatctt cctgctatac cgccacgcta tcgcagcagt tatttcgccc atatttttgg
     5581 tggcggatat gctgcaggtt attacgctta tctgtggacg caaatgttgg ccgatgatgg
     5641 gtaccagtgg tttgttgagc agggcggatt aacgcgtgaa aatgggcagc gttttcgcga
     5701 ggcgatcctt tccagaggta acagcgaaga tctggaacgc ctgtatcgac aatggcgcgg
     5761 taaggctcct cagattatgc cgatgctgca acatcgtggc ttgaatatat aaacaccacc
     5821 aatggctggc ctggagatat cgccaggcca gcctggttat agcagtaatt gcagcagctg
     5881 gacgtgggca aacctcaccg ctaaagctaa taccgtttcg cagtcgccag caaaatgcat
     5941 aaccgcagtg taggtctggc ctttaatatg ccacgcgaac cagacggtac ccgctggcgt
     6001 accatcttca ccgccctcca gtccgccgta gccggtaatg gcaatactga catcagcatc
     6061 cgcacgctct atggcacctg ttgccatttc tgctgccact ttctcactca ccgcagaata
     6121 tcgttcaaga gattgctggc ttacgctgag gattttcatc tttgcctgat cggtgaaagt
     6181 aacaaagcct gcaccgtaaa atttgggtgt atcttcagct gcacacaggg cgctagccaa
     6241 cttaccgccg gtgcatgatt cggcggtagt taagcgtaat tgatccgcga taagtctttg
     6301 actcaacgcg gatgtcaggt ttt
//
LOCUS       DAJVUY010000201         6293 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.202, whole genome shotgun sequence.
ACCESSION   DAJVUY010000201 DAJVUY010000000
VERSION     DAJVUY010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6293
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.202"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ72_003801"
     CDS             complement(85..621)
                     /gene="ssb1"
                     /locus_tag="OQQ72_003801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HCS2013368.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
                     PAAPSNEPPMDFDDDIPF"
     gene            875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ72_003802"
     CDS             875..3697
                     /gene="uvrA"
                     /locus_tag="OQQ72_003802"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCS2013369.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            complement(3732..4088)
                     /locus_tag="OQQ72_003803"
     CDS             complement(3732..4088)
                     /locus_tag="OQQ72_003803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS2013370.1"
                     /translation="MTISELLQYCMAKLGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(4092..4508)
                     /locus_tag="OQQ72_003804"
     CDS             complement(4092..4508)
                     /locus_tag="OQQ72_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HCS2013371.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ72_003805"
     CDS             complement(4619..5332)
                     /gene="aphA"
                     /locus_tag="OQQ72_003805"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HCS2013372.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            5734..5956
                     /locus_tag="OQQ72_003806"
                     /pseudo
     CDS             5734..5956
                     /locus_tag="OQQ72_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165333.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1594 a         1554 c         1568 g         1577 t
ORIGIN      
        1 cataacggag gcttcttttt tatggctggc agatgcttta atcatccacc ttaaaacaat
       61 ataacctatt gttttaatga caaatcagaa cggaatgtca tcatcaaagt ccatcggcgg
      121 ctcgttagac ggcgctgccg gagcggactg ctgcgggcga gactgcgcgc cgccgctgaa
      181 ctgattgcca ccctgcggct gctgaggctg accccaaccg ccctgcggct gaccaccacc
      241 gatattacca cctgccggag cgccaccacc ctgacgacca cccagcatct gcatggtgcc
      301 gccaacgttc accacgactt ctgtggtgta gcgatcctga ccggattgat cggtccattt
      361 acgggtacgc agctgacctt cgatataaac ctgagaacct ttacgcagat attcgctggc
      421 cacttctgcc agtttgccga acagcacaac gcggtgccat tcagtctgtt ctttcatctc
      481 gccggtcgct ttatcacgcc aggattcgga agtagccagc gtaatgttgg caactgcgcc
      541 accatttggc atgtagcgta cttccgggtc ctgacccaga ttaccaacga gaataacctt
      601 gtttacgcct ctgctggcca tgttcgtgtc tcctgaaaaa aatcgttctg aataagtgta
      661 aacgcgcgat tgtaccatta ccaatagcgc ttttactatg ttgtgacctc ggttccggga
      721 aacaaacctg gccagacatt gttacacaac actccggata atgcattcca atactgtata
      781 ttcattcagg tcaatttgtg tcataattaa ccgtttgtga tcgccggtag caccatgcca
      841 ccgggcaaaa aagcgtttaa tccgggaaag gtgaatggat aagatcgaag ttcggggcgc
      901 ccgcacccat aatctcaaaa acatcaacct cgttatcccc cgcgacaagc tcattgtcgt
      961 gaccgggctt tcgggttctg gcaaatcctc gctcgctttc gacaccttat atgccgaagg
     1021 gcagcgccgt tacgttgaat ccctttccgc ctacgcgcgg cagtttctgt cactgatgga
     1081 aaagccggac gtcgatcata ttgaggggct ttctcctgcc atctcaattg agcagaaatc
     1141 gacgtctcat aacccgcgtt ctacggtggg gacaatcacc gaaatccacg actatttgcg
     1201 tttgttgttc gcccgcgtcg gcgaaccgcg ctgtccggac cacgacgtcc cgctggcggc
     1261 gcaaaccgtc agccagatgg tggataacgt gctgtcgcag ccggaaggca agcgtctgat
     1321 gctactcgcg ccaatcatta aagaacgcaa aggcgaacac accaaaacgc tggagaacct
     1381 ggcaagccag ggttacatcc gtgctcgtat tgatggcgaa gtctgcgatc tttccgatcc
     1441 gccgaaactg gaactgcaaa agaaacacac tattgaagtg gtggttgatc gcttcaaggt
     1501 gcgtgacgat cttacccaac gtcttgcgga gtcgtttgaa accgcgctgg agctttccgg
     1561 tggtacagcg gtagtggcgg atatggacga cccgaaagcg gaagagctgc tgttctccgc
     1621 caacttcgcc tgcccaattt gcggctacag tatgcgtgaa ctggagccac gactgttttc
     1681 gtttaacaac ccggcaggtg cctgcccaac ctgtgacggc cttggcgtac agcaatattt
     1741 cgatcctgac cgcgtgatcc aaaaccccga gctgtcactg gctggcggtg cgatccgtgg
     1801 ctgggatcgc cgcaacttct attacttcca gatgctgaaa tcgctggcag atcactataa
     1861 gttcgacgtc gaagcgccgt ggggcagcct gagcgcgaac gtgcataaag tggtgttgta
     1921 cggttctggc aaagaaaaca ttgaattcaa atacatgaac gatcgtggcg atacctccat
     1981 ccgtcgtcat ccgttcgaag gcgtgctgca caatatggag cgccgttata aagagacaga
     2041 atccagtgcg gtacgtgaag aattagccaa gtttatcagc aatcgcccat gcgccagctg
     2101 cgaagggacg cgtctgcgtc gggaagcgcg ccacgtttat gtcgagaata cgccgctgcc
     2161 tgctatctcc gacatgagca tcggtcatgc gatggaattc ttcaacaatc tcaaactagc
     2221 tggtcagcgg gcgaagattg cagaaaaaat ccttaaagag atcggcgatc gtctgaaatt
     2281 cctcgttaac gtcggcctga attacctgac actttcccgc tcggcagaaa cactttccgg
     2341 cggtgaagcc cagcgtatcc gtctggcgag ccagattggt gcgggcctgg ttggcgttat
     2401 gtatgtactg gacgagccgt ctatcggcct gcaccagcgc gataacgagc gcctgttggg
     2461 tacgcttatc catctgcgcg atctcggtaa taccgtgatt gtggtggagc atgacgaaga
     2521 cgcaattcgc gccgctgacc atgtgatcga tatcggtcct ggtgcgggtg ttcacggcgg
     2581 tgaagtggtc gcagaaggtc cgctggaagc gatcatggcg gtgcctgaat cgttgaccgg
     2641 gcagtacatg agcggtaaac gcaagattga agtgccgaag aaacgcgttc cggcgaatcc
     2701 agaaaaagtg ctgaagctga caggtgcacg cggcaacaac ctgaaggacg tgacgctcac
     2761 gctgccagtc ggtctgttta cctgcatcac aggggtttca ggttccggta aatcgacgct
     2821 gattaacgac acactgttcc cgattgccca acgccagttg aatggtgcga ccatcgccga
     2881 accggcaccg tatcgcgata ttcaggggct ggagcatttc gataaagtga tcgatatcga
     2941 ccaaagccca attggtcgta ctccacgttc taacccggcg acctataccg gcgtgtttac
     3001 acctgtgcgc gaactgtttg cgggcgtacc ggaatcccgt gcgcgtggtt atacgccagg
     3061 acgtttcagc tttaacgtcc gtggcgggcg ctgcgaagcc tgtcagggcg acggtgtgat
     3121 caaagtggag atgcacttcc tgccggatat ctacgtgccg tgcgatcagt gcaaaggtaa
     3181 acgctataac cgtgaaacgc tggaaattaa gtacaaaggc aaaaccatcc acgaagtgct
     3241 ggatatgacc atcgaagagg cgcgtgagtt ctttgatgcg gtgccagctc tggcgcgtaa
     3301 gctgcaaacg ttgatggacg ttggtctgac gtacattcgc ctggggcagt ccgcaaccac
     3361 actttctggt ggtgaagccc agcgcgtgaa gctggcgcgt gagctgtcaa aacgcggcac
     3421 cgggcagacg ctgtatattc tcgacgagcc gaccaccggt ctgcacttcg ccgatattca
     3481 gcaactcctc gacgtgctgc ataaactgcg cgatcagggc aataccattg tggtgattga
     3541 gcacaatctc gacgtgatca aaaccgctga ctggattgtc gacctgggac cagaaggcgg
     3601 cagtggcggc ggcgaaatcc tcgtctccgg tacgccagaa accgtcgcgg agtgcgaagc
     3661 ttcgcatacg gcacgcttcc tcaagccgat gctgtaatcg ttaaggccgc tttctgagcg
     3721 gccttttcct ttcagagttg taccagcaat ttacgctttt cttccggtag taaattcact
     3781 gcctgctgat aagacgcatc caccagataa tagatttgcg aatccggcag cgaaccgtcg
     3841 agatacacgg tgctccagtg cgctttattc agatggcggc taggacgcac atcgctgtgc
     3901 tgctgacgta gcagctccgc cagctccggg ctggttttca gcgaaacagc tgggcgattt
     3961 tctacttctt tcaccatcgc aaacagtaca tcttccactt tgatctgcgt cgctttccag
     4021 tcgttatgca cgctctgttc tgcgcctagt tttgccatgc aatattgtag caactccgaa
     4081 atggtcattt tttactcccc ttgtagtgtc gcgatgatgc gacgcgatcc gccgtggatg
     4141 cgatgttccc ccagccagat gccttgccag gtgccggtct gaatacgccc tttatgtaac
     4201 ggcaatacaa gcgatgttcc ctgcattgag gatttgatat gagaaggcat atcgtctgct
     4261 ccctcatagt catgctcata atttccgttg tcgggaacgg tgcggaggaa aaaacgctcc
     4321 atgtcgtggc gtacggtggg atcgcagttc tcattaagtg tcagagaggc ggaggtatgt
     4381 tgcagcaaca gatgcagtaa gccgatgtta acgcgcggca tatcagccag ctgattcaga
     4441 atttcatccg ttaccagatg aaacccacga gatttggcgc taagcgtgag cgtcttttga
     4501 taccacatgt gctgctcctt gataaaactc tcttaatcag tttgcagcaa gacagcgaaa
     4561 ggataaaggt gtgattaaaa aaacagcatt cgggagagca tcacgctctc ccgctctgtc
     4621 agtattctga attgacgatc acctcttcac caaacgcacc cgcttgtggc aagggtttgt
     4681 aggtagagtt ggaggcgcgc agaatgcgga taccacgagc gccgacatcg cgtgcggcgg
     4741 taatatcatt atcagaatcg ccataaaaaa ttcggatatt tttatcctgc agccattgcg
     4801 attttgtatt ttgccctggt ttatcgcccg caaagatcac cggattcatg ttggtggcag
     4861 gaatatgaaa attatccgcc agcgtttttg aaaccgtttc tgttttcgtc ggactacgac
     4921 cagtcacaaa gaagatcgcg tcaccgcggc gtacatgcat atcaatcagc tggcgagcga
     4981 cctcttttgg aatgctgaat tcatcccagc cattgttcat tttttcccag aacacaggat
     5041 ttttcagata atcttcgctt tctggcgaga aggttttttt gccgcgccag aagcccgggc
     5101 tggaaaaaag taccgtgtca tcgatatcaa accccaccgc cattggcgga cgccctgcga
     5161 ggctattttc aatttgtgcg accgaaaccc aatgaattgg tgcctgttca gcaagcctgg
     5221 caacgttagt accagggtta agcggtgaag gagatgaggc cagggcaaca gcggaactgt
     5281 ttagagcgaa caataagcaa acggcactga ttgcctgtgt gatcttgcgc atatttttcc
     5341 ctaaatagtc agtatgttga aactttttat tgtgagattt gttgcaaaaa ccatctgacc
     5401 ataacgccag ctgcagggga aaggaaggat tatctgcggt ttttgtgatg aaaagcagga
     5461 tgattatatt taacccagta aatacgttcc tgtctttttt tgtataaaaa atgtttatta
     5521 ctcgatgtaa ggatacatta attttacgtt tattatgatg aatcctctgc aaatgagcga
     5581 aatttgatag aacatttatc tgctgtacga tttaatgaac ttaatgatac agcattacaa
     5641 aaacaatcga agtttataaa gatgattcct gattgaccag aaccctatcc tacaatggtg
     5701 attaatttta ttactcgcga tggagatgat gatatgaata tatcatatat gaatagcaac
     5761 aaaacgacat ctttacctgt tgagctagat gcactaaata ataaagatat ctcttatgcc
     5821 aaagattttt cttatgtcaa agatttcttt ttatacatag aaacacagtt aaaaattgca
     5881 aaagattttt gtagacttgg agaagaagta tcaagttcta ttgcaagtaa agtttttcac
     5941 gcatttattg atttagttaa caaaatcagg ggtaagaaag actttatgta tatttgcacg
     6001 ctttgctgtt ttgccgagga ggttaaaggt gattattctc attacaggac ctttttattt
     6061 gatattggta atcaatataa ggttaaactt acacaaagcg gaaaaaaaga gttctcttta
     6121 acattagaat ttaacgatac tataattgaa tctcagaaag tcacaggcaa taaggcaaag
     6181 catattcttg aggatataga aatattctat cgtaacaaac ccgatactta ttattaaatt
     6241 taataatggt tagatgtgca gaaattatta ctccacacga aaaaataggg aaa
//
LOCUS       DAJVUY010000202         6266 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.203, whole genome shotgun sequence.
ACCESSION   DAJVUY010000202 DAJVUY010000000
VERSION     DAJVUY010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6266
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.203"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            598..882
                     /locus_tag="OQQ72_003807"
     CDS             598..882
                     /locus_tag="OQQ72_003807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS2013373.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            870..1355
                     /locus_tag="OQQ72_003808"
     CDS             870..1355
                     /locus_tag="OQQ72_003808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS2013374.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
     gene            1389..2567
                     /gene="ltrA"
                     /locus_tag="OQQ72_003809"
     CDS             1389..2567
                     /gene="ltrA"
                     /locus_tag="OQQ72_003809"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HCS2013375.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNTIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            2650..2804
                     /locus_tag="OQQ72_003810"
                     /pseudo
     CDS             2650..2804
                     /locus_tag="OQQ72_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2858..3340)
                     /locus_tag="OQQ72_003811"
                     /pseudo
     CDS             complement(2858..3340)
                     /locus_tag="OQQ72_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(3596..4576)
                     /locus_tag="OQQ72_003812"
     CDS             complement(3596..4576)
                     /locus_tag="OQQ72_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HCS2013376.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(4576..5775)
                     /locus_tag="OQQ72_003813"
     CDS             complement(4576..5775)
                     /locus_tag="OQQ72_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS2013377.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(6097..>6266)
                     /locus_tag="OQQ72_003814"
     CDS             complement(6097..>6266)
                     /locus_tag="OQQ72_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="HCS2013378.1"
                     /translation="EKHLTGKIFTQRIERNNRTLRTRIKRLARKTICFSRSVEIHEKV
                     IGSFIEKHMFY"
BASE COUNT         1709 a         1400 c         1492 g         1665 t
ORIGIN      
        1 cggcatccgg catataggca gcatgaacgc aacacaggct ctcgtacgga acgtgggaac
       61 ctgtcgtctc gatgctaagg gagcggcgcg gagcagaggc actgcaagcg cctgagtacc
      121 gatgcgagac acaggggcag atggcttcgt agtagtgagg aagtgcctgt aatgggcatg
      181 gagcgaaggg ggtcagtcga ggcgtttgag gttaccaatc gaagctatac ccggtaatgg
      241 cgcaggttga cctgcacttg gccaagtgga ttgcccgcaa acacaagcga gcgcgaggta
      301 gtctggtgcg tgcattcgag tggttactgc gaattcgtca cgactgcccg acgctgtttg
      361 cacactggtg cttagcttac gatacttgaa tggttcaacg acaagagccg tatgacgcga
      421 gagtgtcacg tacggttccg tgggagcgta ggggggcggt gcccctgcgc cacccgatat
      481 cccctttgag tgcggttacg tccacagagg taaatgccgc tgacgcggca tctgtaatct
      541 gttactttgt gtacatcatt tgctatatat tgtcaatatg ctattgttgt aaagcaaatg
      601 atatacggag gctttatgaa atcaggtgtt cagctcaatc tcagagcaag agaatcacag
      661 cggatactca ttgatgctgc tgcagaaatt cttcataagt cgcgtacaga tttcattctg
      721 gaaatggcct gtaaagctgc tgaagatgtt attctcgacc ggcgggtgtt taattttaat
      781 gacaggcaat atgaagagtt cattgaaatg cttgatgctc cggttgcaga tgatcctgcc
      841 atcgaaaaat tgctggcaag gaaacctcaa tgggatgtgt aactgcacca gaacctttat
      901 cctcatttca tcaggtcgct gaatttgtca gcggtgaagc tgtacttgat gactggttaa
      961 agcagaaggg gctaaaaaat caggcaatcg gagccacccg gacttttgtt gtatgcagaa
     1021 aaggtacgca acaaatagtc ggtttttact cactggccac tggtagtgtc aatcatacag
     1081 aagctacagg taaccttcgg cgcaatatgc cagaccccat tcctgtaatt atacttgcac
     1141 gcctggctgt agatgtgtca tttcgaggaa aagggcttgg cgcggattta cttcatgatg
     1201 cagttcgtcg ttgttacagg gttgccgaaa atatcggtgt gcgtgcaatt atggttcatg
     1261 cgcttacgga aaacgcaaaa cagttttata ttcatcatgg ttttaagcca tcaaaaactc
     1321 aggtgcaaac attgtttctt aaactccctc aatagggagt aatgcactgg tctgggcatc
     1381 atatctggat gtgcgtcgca acaagggagc cccccggatg cgacgggcag actttgaaaa
     1441 tgttcgacca gcaacgtgat ggcaatctat acaagatctg gaaccggcta tgttcgggaa
     1501 catggtttcc gccaccagtg ctggaaaaac ggatcccgaa gtcgaatggc aaggaacgca
     1561 ttctggggat cccaacagta tccgatcgaa ttgctcaggg agcgataaaa cttttcatgg
     1621 aagaaaagct tgacccgatt ttccatgctg attcatatgg ttaccgacca ggcaaatcag
     1681 ctcatgacgc tctgaaacaa tgtgccatcc ggtgctggcg ttatagctgg atactggaag
     1741 tggacatcag tgcgtttttc gaccatgtga aacatgatct ggtgctcaaa gctctggaac
     1801 accacgggat gcctaaatgg gtcatcctgt actgtcgacg ctggatggaa gcgccaatgc
     1861 agagttgtga aaatggagaa ttaataaccc gaacacgagg cactccgcag ggcggggtca
     1921 ttagtccgct acttgctaac ttgttccttc actatgcatt tgatttgtgg atggaaagag
     1981 aatatcgggg ggtaccgttt gagaggtacg ctgacgatat tgtagtacat tgttcacgaa
     2041 tgagtgatgc aacaaggcta aagaacaggt tatcggagcg cttctcggaa gtcgggctgg
     2101 tcctgaatgc agggaaaacg aatatcgcct acattgacac gtttaaaagg agaaacgtcg
     2161 caacgagttt cacctttctc ggatatgact tcaaagtgcg tacgctgaag aatttcaaag
     2221 gcgaacggta ccgaaaatgc atgccgggtg cgtcaaatgc agcaatgcgc aaaataacag
     2281 aaacaatcaa gaagtggcgt atacatcgct caacagctga gagtttgctg gattttgcga
     2341 ggcgctacaa tacgatagtg agaggctgga tcgagtacta cggaaagttc tggtccagaa
     2401 atttcaacta tcgactgtgg agtgcaatgc agtcacgtct gctcaagtgg atgcagtcta
     2461 aatacagact ttcgaaccgg aaggctcagc gaaagctgac gctggtaagg aaggagtatc
     2521 cgaagctatt tgttcactgg tatttactac gtgcatcaaa tgagtgatca agagccgtat
     2581 gacgcgagag tgtcacgtac ggttccgtga gcagccgggg agtgaaattc tctccggctg
     2641 actcgactcg cgggttccga cagcgatgac gaacatgcgg cggtgttgta ctcgctgatc
     2701 ggcacatgcc gtctgaacaa tgtggaacca gaaaatggct gcgttacgtc attgagcata
     2761 tccaggactg gccggcaaac cgggtacgtg atctgttgcc ctagaaagtt gatctgagct
     2821 ctcagtaaat atcaatacgg ttctgacgag ccgcttactt ttggcgtaat tctgctgcgc
     2881 ctttactgaa cacaatgccg tattcagcaa gaagtccacg aatgtgattt atcagttgtg
     2941 tcctttccat tgaaaccaac cgacgcatat tcaaaaaagt ttggacgtcc tgttgctcca
     3001 gagtttttat tggtacgggt cgtatagttc catgttggca ggcctcagct attgcctgtg
     3061 cgtcgttata atcatttttc tggcaccgct gataagcttt aacatgttgt gccggaagca
     3121 atattacatc atggtcgagt ttcctgattt cccgggccca gtaatgagat gccccgccag
     3181 cctccatcgc aacagtcatt ttaggctgtt gcaccagcca gttaagcagt tgattgcgag
     3241 aaagtttggt ctttcctgcg ggtttgccat gagcattgat actgaaaaga taaaagttcg
     3301 ttttagccag atcaatgccg gtgattttct gttcagacat ggtatcccgc ttacttttgt
     3361 ggttaaagtt tatccatcat ggcgcaattg aaggctgccg tgaaagaggg ggaagactat
     3421 ctcatcggtt actgttaaac ggctaagaga aactatcttt ttcaagcaaa gaagatacgg
     3481 tgaaacaggc gatttcaccg tgaaatactg ttcaaaaaaa acgctaataa aagcaaaatt
     3541 tcttttaaaa cagccaatta aaaactggtg agttgctggc gaaaaacttg aattttcaca
     3601 gcgaattcag attatctttt agtacaagag caatcatacg atctaactta tcctgaactt
     3661 ccaacggtaa tctgccgaat tcatatgaga acgtacgtcc ctttactcgt tttcgagcaa
     3721 atttatcttt actatcaaat ttccataaca aagttacaac cgctttatcc tttactcctg
     3781 aatcaagcaa tgaagacatt tccttggtta taagccgcat aatactgttt ttaacctcgt
     3841 cttcagaaag attgtcatca gcagtaataa gctcaatact cggcgagata ttcttcacaa
     3901 cttcatcaat agatatatca cccagcctca gtcgttcact taattcagcc agttgcctgt
     3961 aatcggcgta tgtcagctca gactgaacag gaaaaagaga cacaaaatct ttaggtacgg
     4021 acgctgcttg gagggcacga gtcaccttag ctgccgacaa tccctctctt tccgcaattt
     4081 gcttctggtt cataccggcc tctttgagac gtactaaacg caacccaatt tcacgaatat
     4141 tatgttcaag tgacgtctgc aaatctttcg ccagatgctg agcttcagaa acagtaagct
     4201 catcatccgt tacaagtaca cgtaatccaa ccttgcatag caaagctgct gcccgacgac
     4261 gggaaccatc caaaatctca ataagatcgc cagtccgaat cccaatacat ggatagaatt
     4321 gttgtaaacg tatagttctg gtgatgtctt ttagtgagtc cggcgtcagg gctgtctgtt
     4381 cgcggccatt cacctcttca accacaaaag tttgagtgtc cactttgtca tgatcaacct
     4441 tgatctcagt aaattttgcc tttcggccag tattgagggt aaatacatga actggagccg
     4501 atatttcttc agtattattc aggatatttg tattcagcgt acggccaata gtcggtcggt
     4561 gctttctgtt ttccatcagt agttggccct tataaattca atacgatcaa aaactgcttt
     4621 agcgaaatct tctgctgcca tacgtgcatt tttcaaagct tcaccactgc caacataagt
     4681 aacaggattc gcagatatca cggtatcaaa cgactcgccg cttctctcaa aaccatcaag
     4741 acgtggcatt gaaacatcaa gcatgtcacc accgaaaatc tcttttgtca ggctatggca
     4801 gtatttatga tctgacttat tcgccagttt cgacatgaag ccaatatttg cctgcaaacg
     4861 gcatgaacat ccatcctgtt caataatctg tacaagttca ggtaaacgag ccaaatattt
     4921 aagcgtggaa tggaaatcaa cttgtgctgg cggcaccggt gtaaacatga tatctgcggc
     4981 agcaatggca tttttcaaaa atgcgtccag atgcgggcct gtatcaataa ggatgaagtc
     5041 gaaatcatgc ttcagcttat caataatatt ctcacgcaat atcgcgtgtt tgttttgtcc
     5101 taatagatgc tcctcgcaca gagtatccca gtttgatgca ataaaggcgt cgtcaataga
     5161 agccggcata acataaacgc cagggataac tgacggaacg ataaaatctt ccagtaattc
     5221 ctcacgactc acgttctgca acatagcctg cggtgcggtt gtatcaacca gccccaccgc
     5281 atgcaagtag ttcagaaaca tagtggctga tgactgggga tctaaatcaa ggagcagaat
     5341 acgtaaatct tctgacagca ggtgaggatg agcacgcagg gcgtgagcta cggaaacact
     5401 actcacggtt ttagacacac cgccttttag actaccgatg aatatggaat atgcctcact
     5461 ataacgatcg cgatatttag gaatgccacg atgtgcatag atatcgataa tgttctggat
     5521 ggttaatgca tattttgtcg cggttcctgc tgggcgtttt tcaaactgat agccctgagc
     5581 ctccatctca ccgactgcac catccacgct tgcgcgcgtt aattttggaa gcttagctac
     5641 agcagacttt gaatagactt gataaaaaac atcagcctga aactcctgct tttgctcctg
     5701 aatctgtttt gttagggcga gcaacatttt atctgcacgc tgcgcaacct tacttaactg
     5761 ctcaaaacta gtcattcccc ctccgtgcta tgtaggattt taacttatta caaaaaaaac
     5821 tgcattagca gggtaatgca tgcaagtgca tattgtacat gcttatatta aaaatgcgcg
     5881 cattgctgat ttattaatca tcggaatgaa tattactgta agatagtatg cctttccggg
     5941 agaaagacgc tgatttcccc cgaataatcc agttcaccac cacactccgg acaacagctt
     6001 tcttcaggct ccagatggtg tatttcgcgg gaaacatgtt ccggtaacgg acggcgatga
     6061 cgtgactgtc gcaacaggcg ggggtagtgc ttccaatcag tagaacatgt gcttttcaat
     6121 gaaggagccg atgacttttt cgtggatttc cacggaacgc gagaagcaga ttgttttacg
     6181 tgccagccgc ttgatgcggg tgcggagggt ccggttgtta cgttcaatac gttgcgtgaa
     6241 gattttgccg gtcaggtgtt tctcct
//
LOCUS       DAJVUY010000203         6188 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.204, whole genome shotgun sequence.
ACCESSION   DAJVUY010000203 DAJVUY010000000
VERSION     DAJVUY010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6188
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.204"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            145..348
                     /locus_tag="OQQ72_003815"
     CDS             145..348
                     /locus_tag="OQQ72_003815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HCS2013379.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
     gene            356..1288
                     /gene="aaeA"
                     /locus_tag="OQQ72_003816"
                     /pseudo
     CDS             356..1288
                     /gene="aaeA"
                     /locus_tag="OQQ72_003816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            1294..3261
                     /gene="aaeB"
                     /locus_tag="OQQ72_003817"
     CDS             1294..3261
                     /gene="aaeB"
                     /locus_tag="OQQ72_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HCS2013380.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IIADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTGLQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRLLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            3353..3625
                     /locus_tag="OQQ72_003818"
     CDS             3353..3625
                     /locus_tag="OQQ72_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HCS2013381.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(3681..3944)
                     /gene="yhcN"
                     /locus_tag="OQQ72_003819"
     CDS             complement(3681..3944)
                     /gene="yhcN"
                     /locus_tag="OQQ72_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS2013382.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(4310..4780)
                     /gene="argR"
                     /locus_tag="OQQ72_003820"
     CDS             complement(4310..4780)
                     /gene="argR"
                     /locus_tag="OQQ72_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HCS2013383.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            5215..6153
                     /gene="mdh"
                     /locus_tag="OQQ72_003821"
     CDS             5215..6153
                     /gene="mdh"
                     /locus_tag="OQQ72_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS2013384.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
BASE COUNT         1513 a         1439 c         1599 g         1637 t
ORIGIN      
        1 atagataaca gcataacagt tacgctaata tattaaatat caatctacag caatgttgct
       61 ctcgcccggc tttccatgcc cttctctgcg gcgacagatg ctgaaaataa taacgcctgc
      121 tctctctata caaccaaggt caacatgagt ctgtttcccg ttatcgtggt gtttgggctg
      181 tccttcccac cgatattttt tgaattgctt ttatcactgg cgattttctg gctggtgcgc
      241 cgggtacttg tgccaacagg tatctacgac tttgtctggc atccggcgtt gttcaacacc
      301 gcgctctatt gctgcttgtt ttatttgata tcgcgactgt tcgtttgagg ttgaagtgaa
      361 aacactaata agaaaattct cccgtacggc catcacggtc gtattagtca ttctggcctt
      421 catcgcaatt tttaatgcct gggtctatta caccgaatcc ccctggacgc gtgacgcgcg
      481 ctttagcgct gacgtcattg cgatcgcgcc ggacgtttct ggactcatta cccaggtgaa
      541 tgttcatgat aaccagctgg tgaaaaaagg acagatactg ttcaccatcg accagccgcg
      601 ctatcaaaag gcgcttgagg aagcgcaagc cgatgttgct tattatcagg tactggcaca
      661 ggagaaacgc caggaggccg gacgtcgtaa ccgtctcggt gtgcaggcga tgtctcgcga
      721 agagatcgac taggctaaca acgtactaca aacggttctg catcagttag cgaaagcgca
      781 ggcgacccgc gatctggcaa aactggatct tgaacgcacg gtgatccgcg cgccagcaga
      841 tggctgggtg accaacctca acgtctatac cggtgagttt attactcgag gatcaacggc
      901 ggttgcgctg gtgaaacaga actccttcta tgtactggcc tatatggaag aaactaagct
      961 ggaaggggtg cgtccggggt atcgtgcaga gatcacgccg cttggcagta acaaagtgct
     1021 gaaagggact gttgatagtg ttgccgcagg ggtcaccaac gccagcagca cgcgtgacga
     1081 caaagggatg gcgactatag actctaacct tgaatgggtg cgtcttgcgc aacgtgttcc
     1141 ggttcgtatt cgtctcgaca accagcaaga gaacatctgg cctgcgggca ccactgctac
     1201 agtggtggtc actggcaaac aagatcgcga cgaaagccag gattcgttct tccgtaaaat
     1261 ggcccatcgc ctgcgtgagt ttggttaatc acgatgggta ttttctccat tgctaaccaa
     1321 catattcgct ttgcggtaaa actggcgacc gccattgtac tggcgctgtt tgttggcttt
     1381 cacttccagc tggaaacgcc acgctgggcg gtactgacag cggcgattgt tgccgccggt
     1441 ccggcctttg ctgcgggagg tgaaccgtat tctggcgcta ttcgttatcg tggctttttg
     1501 cgcatcatcg gcacatttat tggctgtatt gccggactgg tgatcatcat tgcgatgatc
     1561 cgcgcaccat tattgatgat tctggtgtgc tgtatctggg ccggtttttg tacctggata
     1621 tcctcgctgg tacgaataga aaactcgtac gcgtgggggc tggccggtta taccgcgctg
     1681 atcattgtga tcaccattca gccggaacca ttgcttacgc cgcagtttgc cgtcgaacgt
     1741 tgtagcgaga tcgttatcgg tattgtgtgt gcgattatag cggatttgct cttttctccg
     1801 cgatcgatca aacaagaagt ggatcgagag ctggaaagtt tgctggtcgc gcaatatcaa
     1861 ttaatgcaac tctgtatcaa gcatggcgat ggtgaagttg tcgataaagc ctggggcgac
     1921 ctggtgcgac gcaccacggg gctacaaggc atgcgcagca acctgaatat ggaatcttcc
     1981 cgctgggcgc gggccaatcg acgtttaaaa gcgatcaata cgctatcgct gacgctgatt
     2041 acccaatcct gcgaaactta tcttattcag aatacgcgcc cggaattgat cactgatact
     2101 ttccgcgaat tttttgacac gccggtagaa accgcgcagg acgtccacaa gcagctcaaa
     2161 cgcctgcgga gagttatcgc ctggaccggg gaacgggaaa cgcctgtcac catttatagc
     2221 tgggtcgcgg cggcaacgcg ttatcagctt ctcaagcgcg gcgttatcag taacacaaaa
     2281 atcaacgcca ccgaagaaga gatcctgcaa ggcgaaccgg aagtcaaagt agagtcagcc
     2341 gaacgtcatc atgcgatggt taacttctgg cgaaccacac tttcctgcat tctgggcacg
     2401 cttttctggc tgtggacggg ctggacttcc ggcagtggtg caatggtgat gattgcggta
     2461 gtgacgtcac tggcaatgcg tttgccgaat ccacgcatgg tggcgatcga ctttatctac
     2521 gggacgctgg ccgcgctgcc gttagggctg ctctactttt tggtgattat ccctaatacc
     2581 caacagagca tgttgctgct gtgtattagc ctggcagtgc tgggattttt cctcggtata
     2641 gaagtacagc aacggctact gggctcgatg ggggcgctgg ccagcaccat aaatattatc
     2701 gtgctggata acccgatgac tttccatttc agtcagtttc tcgacagcgc attagggcaa
     2761 atcgtcggct gtgtgctcgc gttcaccgtt attttgcttg tgcgggataa atcgcgcgac
     2821 aggaccggac gtgtactgct taatcagttt gtttctgccg ctgtttccgc gatgactacc
     2881 aatgtggcac gtcgtaaaga gaaccacctc ccggcacttt atcagcagct gtttttgctg
     2941 atgaataagt tcccagggga tttgccgaaa tttcgcctgg cgctgacgat gattatcgcg
     3001 caccagcgcc tgcgtgatgc gccgatcccg gttaacgagg atttatcggc gtttcaccga
     3061 caaatgcgcc gcacagcaga ccatgtgata tctgcccgta gcgatgataa acgtcgtcgg
     3121 tactttggcc agttgctgga agaacttgaa atctaccagg aaaagctacg catctggcaa
     3181 gcgccaccgc aggtgacgga accggttcat cggctggcgg gtatgctcca taagtatcaa
     3241 catgcgttga ccgatagtta ggtcaaaacc aacgccaaaa gtgtcggttt tttcatggct
     3301 atacttagcg atgcacggca gaactcgccg cgaaacgtga cggtggcaat agatgaatat
     3361 ttataccttt gattttgatg agattgagag tcaggaggat ttttatcgtg actttagcca
     3421 aacctttggt ctggcgaaag ataaggtacg cgatctcgac tcactatggg atgtgttaat
     3481 gaacgatgtc ctgccgctac cacttgagat tgaatttgtt catctgggag agaaaacgcg
     3541 tcgccgtttt ggcgcgttaa tattgctgtt tgatgaggca gaggaagagc tggaagggca
     3601 tttgcgtttt aatgttcgtc attagcgcaa aaaaaagccc ccgaaccggg ggcaatatcg
     3661 tcggacaaga cgatgagggt ttatttgtac agttcagccg tagcgtgcca ggtgtcaccg
     3721 ctacgagctt cagtaatctg gtaggccgtt gcgcctttct cttccgcttt tttgttcagc
     3781 atttcacgca tatccattgg cgaagacgcc acaccactta cggatacggt cccgattgct
     3841 tcacgatttt gtgcttgtgc agcatcaatg gagtcggcag cgaatgcacc gaaagagaga
     3901 acagaaagta cgcttaatgc agctacagtg gttttgattt tcatgatttt tacctcgaca
     3961 taatctttta gctgggcctt tgttttgtga cccatatcac aaaatcaagc atacactaat
     4021 tattgaacta attaatacca cgctaactgt ttcagttgat actaagtgtt aaaaatgtga
     4081 attttaataa caaaaaagaa ttaaaaacac ggtcatttat ttttaattct agtattttca
     4141 attagataat gaattttgca taatgtgctt tttttaccgt atgtattcat tatgtgaatg
     4201 acatgtcgca gtaaaactgc actattcgtt aaattaatcg caggggaaag cagggggttg
     4261 agagggataa gcaacatttt ccccgccgcc agaagcgacg gggcagagat taaagctcct
     4321 ggtcgaacag ctctaaaatc gcttcgtaca ggtctttgac ggtgaaaccg ttagcagggg
     4381 tggtaaagat ggtgtcatcg ccagcgatgg tgcccagaat accttctgct ttgcccagtg
     4441 agtccagcag gcgagcaatt aactgcgccg cgccagggct ggtatgaatc acgacaactg
     4501 catcgttgta gtcgatatcc agcaccagat tcttcaatgg actggaggtg gttggtacac
     4561 ccagttcagc tggcaggcag taaaccattt ccattttggc attgcgtgta cgtacagcac
     4621 caaacttggt caacatccgc gagactttag actgattaat attgtcaaag ccttgctcct
     4681 gcaacgcggc gacgatttcg ccctgggagc taaatttctc ttctttaagt aatgctttaa
     4741 atgctttaac tagttcttct tgcttagccg agcttcgcat aagtcacccg atatggtggt
     4801 tgatacaaca ttattgtgca tacagatgaa tttttatgca aacagtcaac cctgaagaag
     4861 gctgaaataa tgttatgaaa gagcgggatt ttatcaaatt tcgttattga gaaacatgcc
     4921 tgcgtcacgg catgcaaatt ctgcttaaaa gtaaattaat tgttatcaaa ttgatgttgt
     4981 tttggctgaa cggtagggta tattgtcacc acctgttgga atgttgcgct aatgcataag
     5041 cgactgttaa ttacgtaagt taggttcctg attacggcaa ttaaatgcat aaacgctaaa
     5101 cttgcgtgac tacacattct tgatatgtgg tcattgtaaa cggcaatttt gtggattaag
     5161 gtcgcggcag cggagcaaca tatcttagtt tatcaatata ataaggagtt taggatgaaa
     5221 gtcgcagtcc tcggcgctgc tggcggtatt ggccaggcgc ttgcactact gttaaaaacc
     5281 caactgcctt caggttcaga actctctctg tatgatatcg ctccagtgac tcccggtgtg
     5341 gctgtcgatc tgagccatat ccctactgct gtgaaaatca aaggtttttc tggtgaagat
     5401 gcgactccgg cgctggaagg cgcagatgtc gttcttatct ctgcaggtgt agcgcgtaaa
     5461 ccgggtatgg atcgttccga cctgtttaac gttaacgccg gcatcgtgaa aaacctggta
     5521 cagcaagttg cgaaaacctg cccgaaagcg tgcattggta ttatcactaa cccggttaac
     5581 accacagttg caattgctgc tgaagtgctg aaaaaagccg gtgtttatga caaaaacaaa
     5641 ctgttcggcg ttaccacgct ggatatcatt cgttccaaca cctttgttgc ggaactgaaa
     5701 ggcaaacagc caggcgaagt tgaagtgccg gttattggcg gtcactctgg tgttaccatt
     5761 ctgccgctgc tgtcacaggt tcctggcgtt agttttaccg agcaggaagt ggctgatctg
     5821 accaaacgta tccagaacgc gggtactgag gtggttgaag cgaaagccgg tggcgggtct
     5881 gcaaccctgt ctatgggcca ggcagctgca cgttttggtc tgtctctggt tcgtgcactg
     5941 cagggcgaac aaggcgttgt cgaatgtgcc tacgttgaag gcgacggtca gtacgcccgt
     6001 ttcttctctc aaccgctgct gctgggtaaa aacggcgtgg aagagcgtaa atctatcggt
     6061 accctgagcg catttgaaca gaacgcgctg gaaggtatgc tggatacgct caagaaagat
     6121 atcgccctgg gcgaagagtt cgttaataag taattgatta gcgaataata aaaaaccgga
     6181 gcacagac
//
LOCUS       DAJVUY010000204         6141 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.205, whole genome shotgun sequence.
ACCESSION   DAJVUY010000204 DAJVUY010000000
VERSION     DAJVUY010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6141
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.205"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..385)
                     /locus_tag="OQQ72_003822"
                     /pseudo
     CDS             complement(1..385)
                     /locus_tag="OQQ72_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(571..3879)
                     /gene="icsA"
                     /locus_tag="OQQ72_003823"
                     /gene_synonym="virG"
     CDS             complement(571..3879)
                     /gene="icsA"
                     /locus_tag="OQQ72_003823"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HCS2013385.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGFTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISHSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4408..5610
                     /gene="virA"
                     /locus_tag="OQQ72_003824"
     CDS             4408..5610
                     /gene="virA"
                     /locus_tag="OQQ72_003824"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HCS2013386.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQLNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5789..6141
                     /locus_tag="OQQ72_003825"
                     /pseudo
     CDS             5789..6141
                     /locus_tag="OQQ72_003825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558238.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     misc_feature    6069..>6141
                     /locus_tag="OQQ72_003825"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /pseudo
                     /db_xref="RFAM:RF01497"
BASE COUNT         1883 a         1393 c         1059 g         1806 t
ORIGIN      
        1 tacgcttccc catgtgattt gcctcgccac ttcaccgggc tcaggacccc gtaggatctt
       61 caccgaaaaa aatgcatcac cagttgcttt attatttgtt ttaggtagac ctgttactaa
      121 tttataccta ctctgaccaa gtctggataa gaaaggcaca cctgcacatt tctacttgga
      181 aatgttttct tttaccattt tgctcaaaaa tttcaacatc caatattcct cgtacagaac
      241 tactcaagtc ctgaatagaa aaagttccag ctggtacagt agagtcatat attgctcgac
      301 cttgttgaga tacaacaaca cgtgcattag tttctgcaat accagtaatc tgaggcgcat
      361 aaccacgaat atttggcggt agcattcgtt catcgctttc taatgcaatt cctgtgtaac
      421 gccaagcaac agcgcattct ggcgcatgat ctggtaaaca cgtttggcat tgatcgcagg
      481 cataccatca tgtgcacaaa aacccaccga gcttttacac ggtgggtccc agagaaatgc
      541 aggacatcaa cacgccctgc atttttatta tcagaaggta tatttcacac ccaaaatacc
      601 ttgggtgtct ctgtaactgt tattacccaa ttgctgagat acgtttcccc agatgcttag
      661 gttatctgca agacgccccc ccacaccagt tttgagttca atcacattac ggttgcctat
      721 ctggtgattt gacatgccat tcataattac accatattgc tttgagctcc atttccaatt
      781 cacttccaaa aatggttcga acttacgaag agtctcctta tcgatacaac tatgactaat
      841 taaggatgta cgcaatccca attttgcttg aatattattg accccagagg atgtgaccat
      901 agtgccattg tgttcaatat agtcgtttgc ttttacccca tgcctagtta tctggacttg
      961 tggattgaga tacaatgcgt tgtcaatatt attatgagta gtccagcgta tggttgggta
     1021 gatatagcca gcttccaaag ctcctgttat tcctttgctg gaatatttct caccagtaaa
     1081 cccatctcct ttgactgtat tattaaacca accgtactgc aaccaagcat ccatatatag
     1141 acctgttcgt tctttttcat cctgaaacca agaactgtac aaaccggcag tataaccgct
     1201 cacagttcct cgtgaactat aactagtata cttattatga gttttgctat cctgatatcc
     1261 ataagctccc ataataccca catgcaagcc atcatgatca gtgaagtttg tcttcaaaat
     1321 atctccacca atctgataaa ccatcctgtt agctgtggtt tttaattgtc tatcagctaa
     1381 attatgctca ttatgtccac caacagtacg aatccacatg gtggtttcgc tgagctgacc
     1441 tgtagtagga tcaacaatag tgctaccgtg tcggtcatag agagaaggac taaacatcgt
     1501 gttcattgct atcaggttag caatataact gccagcttca gggcgccatg tgtgaatact
     1561 accttcaccc aaattaagtg aagatacaag ctgtgaacta gctcggcgac tactcatttg
     1621 agtagactct tgattgctca tctgttttga ttcttgatta tccatctgac tagttagata
     1681 ccacttattg gtattcagtc cagatacagt gccctgtttc aggcgatagt cataactacc
     1741 agcaacaata cggcctttct gaataaaagc attcttatca gaagaatctg tcgaaataat
     1801 ttgaacacct tcaagagttt tatctccaga gcctccctca tttgtcactg caacataggt
     1861 aataccagac gcatggcctg taatttccag ccggtcagtt ttactgttgt cattgccgag
     1921 aaccgcgccc aaagataata ttccgccctt tccatgccaa ttacctttct gaacataggt
     1981 ctgaccgaca tttgacgaac tattattgag aataacatga ccgtttttct ccagagtcat
     2041 gttacctgtg acaatgacgg ggtcaggcaa aaaaggggca ttaatattat tgattagcac
     2101 agtcccacta tttaataaag tgttaacagt ttggttcatg cctgaaaaat tcaaggtagc
     2161 acctttatta acaataacac cagcggtacg tgtcatagct tcaactgtcc ccatttttag
     2221 aatgcctgca ttgatgttgg tgaaaccaga gtaggtattt ttttccgcca aaatgagagt
     2281 tccctcccct gattttgtta gggattttcc gtcccagcta tttatattat gatggctgag
     2341 attatctgcc agaatagtac taacagtaag ttcagcgttt tctttcagat tgaactctcc
     2401 atgactgtcg ccatctgtat cattccagct caaaccgtag atcaatttat tctggtcact
     2461 gatatagctt tttgtatagt caatagcacc agtagtgagt aacggattga tgatagatat
     2521 attagaaaca ctgaaacctg ttatcccttt atctgcactt agcagtttat agtccttctg
     2581 cgcccagtta tttataatag cttccacttt tacattgttg ccaaatgaca tatttccaga
     2641 agcttccaga ctactgattc cagctaaatt taaagaactg ttctcaccaa aagaaacgtc
     2701 acctgaaaca gtgaatttgt tacctgatag tgaaacagtt gtacaatcac cagcacataa
     2761 atcaccttca atagttggtg tggtcccagt gtaatcattg ttgataattt tcagaatgga
     2821 tgaattgtta acctgtacat caccagtaat gacagaacct tcatggagta ttaatgaatt
     2881 gtttccacca gtgatgtgga tagcattacc tgctacattt tgtgttccat catcttcttt
     2941 acctgaaatt atatatccgc tattagcaat ggtcatattg ctaccattta tagcatcccc
     3001 ccaatgtcca ccattaccgc ctaaaatagc tccattgttg attatagaca ggttatctcc
     3061 tgtgatagca ttaccaccgt agccatcata accataaccg taagcagcac ctccgttgcc
     3121 tccagcgaac gtgcccttat tgattacaga gaggctgctt cctgtgatgg catcacctcc
     3181 attaccgcca tcaccctcac cataattgtt acctccatta ccaccggaaa tagtcccttt
     3241 gttgattatg ggtagattga ctcctgtgac ggcatcacct ccattccccc catcactatc
     3301 actataacta tcgccaccat gtccacctga aataatttct ccatttatta taaacagatt
     3361 gtctcctgta acagcctcac caccatcacc gttatggtca gcaccgctac cgccgctacc
     3421 accaagaatc atgccttgat tgattataga caagtcagat ccggtaatag agtcaccacc
     3481 attaccgcca caactattac catcattatt atcaccagca ccaccatgac ctgcgctaat
     3541 cataatatca gagttaatcc gtagcttagt tctagatgca tgagaggggt tggaagaagt
     3601 tatataccac gcatccattc catcttcacc agctcccaag ggagaaagtc catcaacagg
     3661 tgttaataat ttttcataat tgtcctctga aaaatgaagt tcttgagtac ccgaaagagg
     3721 aatagcaaaa gctattggcc ccccgagcaa cagggatgca ccaacaacaa aaggagaaaa
     3781 agacaatttg catgtttttt cctttaccgt aggtaattct ccggcccccc cctgtgaaca
     3841 ttgggtcata ttacaaaaaa atttgtgaat ttgattcatg cactatatta tcagtaagtg
     3901 gttgataaac ccctaaaaag attccgtttt atccggaata aagggacgat atatgcaaaa
     3961 acatattaaa caaagcctca accaaaacat gagagctgtg ttatatatca atgcaacggg
     4021 agaaatttac ctgtgtcttg ctttgaaaaa aagaggggga aagctatatg ttcgataata
     4081 aattaataat tttactatga tagtctgctt cagaccgcaa cttttcagtt ctttctgtac
     4141 gcttgcccaa agtttaacca ctttgttttt ctatacaccc aatggttcta tctgcccctt
     4201 gatgttaatc cccaaagcca ataacatgaa tgtattcata tcacaacttt cctaccagac
     4261 tctccaatgc aataactgca taattgtttt tagtggaaat gtatcgtttt cttaaagaga
     4321 agaataacat tccattttat tatgttccca atttaattat attaatatat attggcatca
     4381 ataggaaaat acatcaggag aaatcaaatg cagacatcaa acataactaa ccatgaaaga
     4441 aatgactcat catggatgtc aactgtcaaa tcaactacag aagtaagttg gaataaattg
     4501 agtttttgtg acgttttact gaaaataata actttcggaa tatattctcc acacgaaact
     4561 ctagccgaaa aatatagcga aaaaaaacta atggatagtt tctcaccatc actatcacaa
     4621 gataaaatgg acggagagtt tgcccacgca aacatagatg gcatttcaat acggctatgc
     4681 cttaacaaag gcatatgttc ggttttttat cttgatggag ataaaataca atccactcaa
     4741 ctttcatcaa aagaatataa taacttgtta agttcactcc cccccaaaca attcaactta
     4801 ggaaaagtac atactattac agctccggta tcagggaatt ttaaaactca caagcctgca
     4861 ccagaagtta ttgaaacagc cattaattgc tgtacatcga taataccaaa cgatgattac
     4921 ttccccgtta aagacactga ttttaatagt gtttggcatg atatttacag agatattcga
     4981 gcatctgaca gcaatagtac aaaaatatat ttcaacaata ttgaaatacc actaaaatta
     5041 attgcagatc taattaatga gttaggaatt aatgaattca ttgatagcaa aaaagagctt
     5101 caaatgctaa gttacaacca attaaataaa ataatcaatt caaacttccc ccaacaagac
     5161 ctatgttttc aaacagaaaa acttttgttt acttcactct ttcaagaccc tgcatttata
     5221 tccgcactaa catctgcatt ctggcaatct cttcacatca cgtcttcctc tgtggaacac
     5281 atatatgccc aaattatgtc cgaaaacata gaaaacaggc ttaatttcat gcctgaacaa
     5341 cgagttatta acaattgtgg acatattata aaaatcaacg cagttgtccc taaaaacgac
     5401 actgcaatct ctgcctctgg ggggagggct tacgaagtta gctcatcaat attaccatcg
     5461 cacataacat gtaatggtgt tggtattaat aaaatagaaa caagctatct cgttcatgct
     5521 ggaacacttc caagcagtga agggcttcgc aatgctatcc ctccagaaag tcgtcaagta
     5581 tcatttgcca tcatatctcc tgatgtttaa gccaatatta tattggctgc cagactgtaa
     5641 aaaaacgttc ttcagaacag ctctataaac tattaaacca aagctaaaag gatggggacc
     5701 aatagaatct cagcccatcc tttttatatc attatgaacc gccccggaaa tcctggagac
     5761 taaactccct gagaaagagg taaacaggat gactaaaaat acacgttttt cccctgaagt
     5821 ccgtcaacgg gcagttcgta tggttctgga aagtcagggc gaatatgact cacaatgggc
     5881 agcgatttgt tccattgctc caaagattgg ctgtatactg gagactctgc gtgtctgggt
     5941 acgccagcat gagcgggata ccgggggcgg tgaggtaggc tcaccaccgc tgaacgtcag
     6001 cgtctgaaag agccggaacg tgaaaatcgt gaactgcgcc gcagtaacaa tatccttcgc
     6061 ctggcttccg cttattttgc aaaggcggag ttcgaccgcc tctggaaaaa ataatgccac
     6121 tgctggataa gctgcgtgag c
//
LOCUS       DAJVUY010000205         6051 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.206, whole genome shotgun sequence.
ACCESSION   DAJVUY010000205 DAJVUY010000000
VERSION     DAJVUY010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.206"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(95..2197)
                     /locus_tag="OQQ72_003826"
     CDS             complement(95..2197)
                     /locus_tag="OQQ72_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS2013387.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRNYGVGMNIAWRFE"
     gene            2439..3500
                     /locus_tag="OQQ72_003827"
     CDS             2439..3500
                     /locus_tag="OQQ72_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HCS2013388.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="OQQ72_003828"
     CDS             complement(3613..5112)
                     /gene="ansP"
                     /locus_tag="OQQ72_003828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HCS2013389.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5379..5996
                     /locus_tag="OQQ72_003829"
     CDS             5379..5996
                     /locus_tag="OQQ72_003829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HCS2013390.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDC
                     YLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII"
BASE COUNT         1610 a         1537 c         1444 g         1460 t
ORIGIN      
        1 gtcttgctga aattatgcaa caaaatattg ctattttata ccagcaatac aatcgttaaa
       61 gtaaatgccc ggcaaatacc gggcatcaag gtaattactc aaatctccac gcaatattca
      121 tgccgacacc ataatttcgt ccgggcgaag gttcgtaata tctcccgttt gactcattga
      181 caatgacaga accaacgtat tctttatcga ataaattatc gacacgacca aataaatcca
      241 cagttaaatt gtggtaattg tatttatacc cggtgaataa gccgacgaga gtataagacg
      301 gcgcttttgc cgtattttca tcatctgcca taatatcgcc catataacgc gcttccgtgc
      361 ctgcatacca accatcttcc ggtacataac ctatcgacgc aaagcccata ttacgggcga
      421 tccctggcat ccgattaccg ttacaatcct gttcattgca aacattgctg cgataggtcg
      481 catcaagcca ggtccaggac gcgtttacgc gaaaatctcc tgcgaaacgt tgatcccatg
      541 ccagttcagc gccttgacga cgggtctttc cggcattttt gtaagtcgta cgcccaccgc
      601 tactgctatc gacaacaatt tcatcatcag tgtcggtctg aaacaatgcg agactaagca
      661 gcccatcacc aatacgcgtt ttactgccga tctcaattgt atcgttggtg gatggtttta
      721 aaccaaagtt cataccgctt tgcccatcag cacgataaga cagctcatta atcgtcggcg
      781 tttcaaagcc tcgcccggct gccagataga tattccaggc atcggtcatt gcatatttta
      841 acgaaccggc aggtagccat ttatgataac tggcatcacc gctgtcatcg ccgttacccg
      901 gagtaacgta atggtcgttg gaatcaaacc acacggagct gtagcgcacg ccagcatcca
      961 gcgacagttt ttcgctcagc tgccactgcg tctgtaaata gggatcgatg ttccacatca
     1021 gattgcgttc gtcgcgacgc aactcacctt tttgcccgta ctccggcatg ccgctattca
     1081 ggcggaagtt attgtagccc ttgcggtttt cactcatgtt ttcgtagttc aggccggtag
     1141 tgaacgtgac cggaacgccc agttcaccac ggtgtgtcca gcggctgtct atcccctggt
     1201 aatggcgttg cagggtaatc acgccgcccg catgtgacgg gttaagttgt ggtgccatgg
     1261 gtattgactg gtactgggtc gtttctcgct ctccggcata catcatcaca ctcatatcat
     1321 cttgcgcgct caggctacgc tcatagcgca acccagcctg agtttgcttg atggtttttc
     1381 gcgtgtcgta ctgttctgca cgaggcgctt gttgtggatt agccttccat tctgctttgg
     1441 ttagcccacc tgggtcatct gctttgatat ccacactatt gaaaatcaga cttaatttgc
     1501 tggcttcatc aatgcgtacg cccagtttgg cattggctaa atttttctgt gcgccactat
     1561 ggtcacgata gccgtgggtc gtaaaacgcg tggttgagac ggtgtaatcg acatcgccag
     1621 gctgtgtgcc gtctcccgtt gcgcccgttg ctttcagccc atagcgccag ctgccaaaac
     1681 tgccgtagta actactggct tcaatggttg gtggctgttg tccggtctgg gtggtgacat
     1741 tcattacccc accagacgcg ttgccataca gggcagagaa ggggccacgc agcacttcca
     1801 cattttgcac actgcttaaa tcgatgttgg atgtttgccc ttgcccgtcg ggcatggtgg
     1861 cgggaatacc gtccacatac aggcgaatac cgcgaatacc gtaagtggag cgggagccaa
     1921 atccgcgaat cgacagctgt aaatcttgcg catagttctg ccggttttgt acctgcaaac
     1981 caggcacgcc ggtcagtgat tcggacaagt taatgcgcgg tgttgccagg cgcatctcct
     2041 cgccatccac cacgcttact gctgctgggg tatccagttc tgaaaccacc tgcggtgcgg
     2101 cactgacaat catagtctgt tcatcagcgg caaaaacaac gggggaaagg acaagcagtg
     2161 cgggcaaaac ggtctgtcgg acggaaaaaa tcttcatgaa aaaagccagg ttaagaatgg
     2221 gaaaacgctg tcatggtaat aaaattgtaa acttatgcaa aacgaaacgg cacgatacgt
     2281 taattaattg agaaaattgt agtcgtaacg gcaagaaatg ctccacattt gagaaaataa
     2341 tgattaccat tcccatttat aacaagagcg tgacgatgat tacgcttagc gaagcattgt
     2401 gaagcagcaa aaatattggt tcatcaaagg gagtcgtcat gcatttacgt catctgtttt
     2461 catcgcgcct gcgtggttca ttactgttag gttcattgct tgttgcttca tcattcagta
     2521 cgcaggccgc agaagaaatg ctgcgtaaag cggtaggtaa aggtgcctac gaaatggctt
     2581 atagccagca agaaaacgcg ctgtggctcg ccacttcgca aagccgcaaa ctggataaag
     2641 gtggcgtggt ttatcgtctt gatccggtca ctctggaagt gacgcaggcg atccataacg
     2701 atctcaagcc gtttggtgcc accatcaata acacgactca gacgttgtgg tttggtaaca
     2761 ccgtaaacag cgcggtcacg gcgatagatg ccaaaacggg cgaagtgaaa ggccgtctgg
     2821 tgctggatga tcgtaagcgc acggaagagg tgcgcccgct gcaaccgcgt gagctggtag
     2881 ctgatgatgc cacgaacacc gtttacatca gtggtattgg taaagagagc gtgatttggg
     2941 tcgttgatgg cgagaatatc aaactgaaaa ccgccatcca gaacaccggt aaaatgagta
     3001 ccggtctggc gcttgatagc aaaggcaaac gtctttacac cactaacgct gacggcgaat
     3061 tgattaccat cgacaccgcc gacaataaaa tcctcagccg taaaaagctg ctggatgacg
     3121 gcaaagagca cttctttatc aacatcagcc ttgataccgc caggcagcgt gcatttatca
     3181 ccgattctaa agcggcagaa gtgttagtgg tcgatacccg taatggcaat attctggcga
     3241 aggttgcggc accggaatca ctggctgtgc tgtttaaccc cgcgcgtaat gaagcctacg
     3301 taacgcatcg tcaggcaggt aaagtcagtg tgattgacgc gaaaagctat aaagtggtga
     3361 aaacgttcga tacgccgact catccaaaca gcctggcgct gtctgccgat ggcaaaacgc
     3421 tgtatgtcag tgtgaaacaa aaatccacta aacagcagga agctacccag ccagacgatg
     3481 tgattcgtat tgcgctgtaa tagatatggc gagggtgaaa acggtgagac ttgcctgcct
     3541 tttatcacgg cgtatccggc actttcgtca gtaatctgaa tttgcccggc acgtagccgg
     3601 gcaattttgc aattaactcg ccgtttcagg cttaaacaca atttcctgtt tttcttcatc
     3661 ttcctcgacg actggcgcag tgctgtgaat ttcagcaacg cgtttgcgca caccaaacca
     3721 gcctataacc agcagaatac cgataatcgg cagcgccgcg atagtataag tcccgttcgg
     3781 gtaatcgaac gccatcagca caaggacact cagtaaaaac agtaatgtca gccaggaagt
     3841 gaagggcgcg ccaggcagtt taaaactgac atccgctgct ttgccttctt taatcgcttt
     3901 acgcaggcgc atctggcaca cgatgataaa cgcccatgaa gcgatgattc ccagcgacgc
     3961 gaagttcaac acaatctcaa atacgcgcga cggcaccaga tagttgagga atacgccgac
     4021 gacatacaca accagtgtcg ctagaatccc ggcatacggc acatgctgac gactcatttt
     4081 cgccataaaa ctcggtgcgg aaccgcccat cgccattgag cgcagaatac gtccggtgca
     4141 gtacagacct gagttcaggc tggagagggc agcggtcagc accacaatgt tcataatgct
     4201 gccgatatat ggcacaccca gtttagagaa aaacgtcacg aacggacttt gccccgcctg
     4261 atacgcgctc cacggcaata acataaccag caacaccacg gagccgacgt aaaacaggcc
     4321 aatacgccaa atcacactgt taatggcttt aggcaccatg gtctgcggat ctttacattc
     4381 tccggcagct gtacccacca tttcaatgga ggcaaaagca aacactacgc cctgaatcaa
     4441 caccagcgca ggcagcaaac cgtgggggaa gaagccgcca ttatcggtga ttaaatgaaa
     4501 gccagtggtg ttgccatcca gcggctgacc actaccgagg aacactgtac ccacgaccaa
     4561 aaaggtcaca atggcgagca ctttaataag cgcaaaccag aactccatct ccgcaaacca
     4621 tttcacaccg atcatattca tggtgccaac gatggtaagt gcagcgagcg caaagaccca
     4681 ctgcggcacg ccgccaaacg caccccagta atgcatatac agagcgacgg cggtaatatc
     4741 aacaatcccc gtcatcgccc agttgatgaa gtacatccag ccagcaacat aagcggcttt
     4801 ctcacccaaa aactcacggg cataagagac aaaactgcca ctggaagggc ggtgtagcac
     4861 cagctcaccc aatgcacgca gaataaaaaa cgaaaacaag ccacaaatta aataaaccag
     4921 tgccagtgct ggacccgcca tttgcagtcg ggctcctgca cctaaaaaca agccggtgcc
     4981 aatcgcgccg ccaatggcga tcatctgtac ctggcgattg cccatcgctt tgtgataccc
     5041 ctcttcgtgg gcattaagcc agcggcgttt cgcggcgtgt tgatctgaag tgtcggtgtc
     5101 gtgtttactc attgctctcc ctgattgctt taatgaaaaa gtcatataag ttgccatgaa
     5161 caatgtttat tcatcctggc gatgatagtt atcaccatta ttctttatgg gtataaaact
     5221 atcggcgcag catcctaccc gttatcgata tacgatgcaa aacatcccct tacaatcctg
     5281 aaggggattc atacaactga cgaaaaaatg acaaatactt ttgctggtta acctgtgtac
     5341 tgtcctacac ttaatcttta aaagattgtg aggggcatat gattaaggtg tatggcgtac
     5401 ccggatgggg ctctacaatc agtgagctga tgctaacact ggctgatatt ccttatcagt
     5461 tcgttgatgt cagtggtttt gaccacgagg gaacttcacg cgagttattg aaaaccctga
     5521 acccgttgtg tcagattccg acactggcgc tggaaaatga cgagattatg acggagacag
     5581 cggcgattgc attgatggtt ctcgatcgtc gcccggacct tgcgccaccg gttgggcgcg
     5641 ccgaacgtca gcagtttcaa cggctattgg tctggctggt tgctaatgtc tatccaacat
     5701 tcactttcgc cgattaccct gagcgttggg ctcctgacgc acctgaacag ttaaagaaga
     5761 atgttattga atatcgtaaa tcgctttata tctggctgaa ttcacaattg accgctgaac
     5821 cttatgcgtt tggtgagcaa ctaacgctgg tggactgtta tctttgcact atgcgcacat
     5881 gggggcctgg gcatgaatgg tttcaggata atgccacgaa tatcagtgcg attgctgatg
     5941 ctgtatgtca gttaccgaaa ttacaagaag tattaaaaag gaatgaaatt atttgagtgg
     6001 gataccagag gattatgtta tttattattc agtaacttta tccacaatga t
//
LOCUS       DAJVUY010000206         6046 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.207, whole genome shotgun sequence.
ACCESSION   DAJVUY010000206 DAJVUY010000000
VERSION     DAJVUY010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6046
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.207"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(28..396)
                     /locus_tag="OQQ72_003830"
     CDS             complement(28..396)
                     /locus_tag="OQQ72_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013391.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            922..1617
                     /gene="minC"
                     /locus_tag="OQQ72_003831"
     CDS             922..1617
                     /gene="minC"
                     /locus_tag="OQQ72_003831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HCS2013392.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1641..2453
                     /gene="minD"
                     /locus_tag="OQQ72_003832"
     CDS             1641..2453
                     /gene="minD"
                     /locus_tag="OQQ72_003832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HCS2013393.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2457..2723
                     /gene="minE"
                     /locus_tag="OQQ72_003833"
     CDS             2457..2723
                     /gene="minE"
                     /locus_tag="OQQ72_003833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HCS2013394.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3202..3321)
                     /locus_tag="OQQ72_003834"
     CDS             complement(3202..3321)
                     /locus_tag="OQQ72_003834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCS2013395.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3282..3467)
                     /locus_tag="OQQ72_003835"
     CDS             complement(3282..3467)
                     /locus_tag="OQQ72_003835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013396.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3568..3741
                     /locus_tag="OQQ72_003836"
     CDS             3568..3741
                     /locus_tag="OQQ72_003836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013397.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVRATYLIPDI"
     gene            3743..4087
                     /locus_tag="OQQ72_003837"
     CDS             3743..4087
                     /locus_tag="OQQ72_003837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415690.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HCS2013398.1"
                     /translation="MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNG
                     VNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVI
                     GGTGGAILGKMK"
     gene            4091..4426
                     /locus_tag="OQQ72_003838"
     CDS             4091..4426
                     /locus_tag="OQQ72_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HCS2013399.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4483..6046)
                     /locus_tag="OQQ72_003839"
                     /pseudo
     CDS             complement(4483..6046)
                     /locus_tag="OQQ72_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1659 a         1395 c         1385 g         1607 t
ORIGIN      
        1 cgaatagaac ataatgtaaa caaggcatca ctcacgacac ataaataaca tctttgtggt
       61 gatttgattg atttttccac tccgcttacc atccacacca aaataacgat catcacgaca
      121 taatttttct ttaacatcgc aaaatacacc gttagcgaat gtaaattcgc tgggatcgta
      181 gccttgtaat gattgtaagt tttcagcggc tttttcgccg agatatttcc ttgttaactc
      241 tggggaaatg ccatctgagt tcacacaaat atacgggtcg caaacaacgc cgcacgccgg
      301 agattgaagt ccgccagcgt catgtccaga cgccattgat gagaacatca tccccacacc
      361 tgacaatccg atataaaaaa tacgcatcat attcatagca catcctgata atccaaccgt
      421 acaacactta tgctcatttc atcatcaatc cgtaatcaaa accgctgacc tggacgagtt
      481 acgatgacct gacagaagta tcagacgtct tctgcggttt ctatgattat gatagagcaa
      541 ttctatggcg gatattaaga taacgggtat ctgttcttta atgatgctgc aaaaaatgga
      601 aagttaagaa agcctggcgt ggtgaaaaaa tacacttgcc tcaatactgg atatttaaac
      661 aggtctggag atgctgtcac gattagggtg cggaaaaagg aagcgtaaat aagaacaatc
      721 aaaagtacga cggcaatggg ttgattgaca agggtatttt ttaagctatg aatcagcgcc
      781 atttatcaca gaatagactt ttactctgaa taaatgggag ggtgacttgc ctcaatataa
      841 tccagactat aacatgcctt atagtcttcg gaacatcatc gcgcgctggc gatgattaat
      901 agctaattga gtaaggccag gatgtcaaac acgccaatcg agcttaaagg cagtagcttc
      961 actttatctg tggttcatct gcatgaggca gaacctaagg ttatccatca ggcgctggaa
     1021 gacaaaatcg ctcaggcccc cgcattttta aaacatgccc ccgttgtact caacgtcagt
     1081 gcactggaag acccggtaaa ctggtcagcg atgcataagg cggtgtcggc aaccggtttg
     1141 cgggttattg gcgtaagtgg ctgcaaagat gcgcaactta aagccgaaat tgaaaagatg
     1201 gggctgccta tcctgacgga aggaaaggaa aaagcgccgc gtccagctcc cgcaccacag
     1261 gctccagcgc aaaatacaac gccggtcaca aaaacgcgtt taatagatac cccggtgcgt
     1321 tccggtcagc gtatttatgc tccacaatgt gatctgattg ttacaagcca cgttagcgct
     1381 ggggccgaat tgattgccga tgggaacatt catgtctatg gcatgatgcg cggtcgtgcg
     1441 cttgcagggg caagtggtga ccgggaaacg caaatatttt gtacgaacct gatggcggaa
     1501 ctggtgtcca tcgcaggtga atactggctg agtgatcaaa tcccagcaga attttatggc
     1561 aaagcggcgc gactgcagtt agtcgaaaac gctttgaccg ttcaaccgtt aaattgatcc
     1621 ctttttaaca aggaatttct atggcacgca ttattgttgt tacttcgggc aaaggggggg
     1681 ttggtaagac aacctccagc gcggccatcg ccactggttt ggcccagaag ggaaagaaaa
     1741 ctgtcgtgat agattttgat atcggcctgc gtaatctcga cctgattatg ggttgtgaac
     1801 gccgggtcgt ttacgatttc gtcaacgtca ttcagggcga tgcaacgcta aatcaggcgt
     1861 taattaaaga taagcgtact gaaaatctct atattcttcc ggcatcgcaa acacgcgata
     1921 aagatgccct cacccgtgaa ggggtcgcca aagttcttga tgatctgaaa gcgatggatt
     1981 ttgaatttat cgtttgtgac tccccggcag ggattgaaac cggtgcgtta atggcactct
     2041 attttgcaga cgaagccatt attaccacca acccggaagt ctcctcagta cgcgattctg
     2101 accgtatttt aggcattctg gcgtcgaaat cacgccgcgc agaaaatggc gaagagccta
     2161 ttaaagagca cctgctgtta acgcgctata acccaggccg cgtaagcaga ggtgacatgc
     2221 tgagcatgga agatgtgctg gagatcctgc gcatcaaact cgtcggcgtg atcccagagg
     2281 atcaatcagt gttgcgcgcc tctaaccagg gtgaaccggt cattctcgac attaacgccg
     2341 atgcgggtaa agcctacgca gataccgtag aacgtctgtt gggagaagaa cgtcctttcc
     2401 gcttcattga agaagagaag aaaggcttcc tcaaacgctt gttcggagga taagttatgg
     2461 cattactcga tttctttctc tcgcggaaga aaaacacagc caacattgca aaagaacggc
     2521 tgcagattat tgttgctgaa cgccgtcgca gcgatgcaga accgcattat ctgccgcagt
     2581 tgcgtaaaga tattcttgag gtcatttgta aatacgtaca aattgatcct gagatggtaa
     2641 ccgtacagct tgagcaaaaa gatggcgata tttctattct tgagctgaac gtgaccttac
     2701 cggaagcaga agagctgaaa taagcccgct gtaaaaacgc atttatcttc aaggcagagt
     2761 catttctgcc ttgagttttt catccctctc atccacgttg tggtaaagcg gcgagtattc
     2821 ttgctgatac tcctcattgc tatttccacc tcccccttta caccttaagg ctgttcccac
     2881 gcacagaaca aaatgtttat gcctggttga gtaaataacc tcattgttag tgtggataca
     2941 ctgggggatg ataaccccgc aatttcatta ttcattgttc tcccatagga tgaggtttcc
     3001 cgccgtaact ggcgggcttt ttttgcccca gaattttccc ttttagcccc ctgtaaacga
     3061 aaactgcgcc gaagcgcagt ttaatcgttg atggtcagaa cgaccagttc acgatatata
     3121 ctgcgggtat cgactgattt cgattccatg ccattggata aatgatagta gcgtctaagt
     3181 gacctaagct ctgctgcaac atcagcccgc aggcaccaga ccaggggatt catcctgaag
     3241 agacagcgca ggtgtattgt gttcaccact caccaaagac atcatgatga aatgatgata
     3301 tcccgcataa gaaagaggca ttttttaaac gcagtgcgct gaagtgtagt tggataaaaa
     3361 atcactcttt tcagataata ctgtcgtacg cttatctttc gacaatgagg ccgtcggcaa
     3421 aataaaatga ctaatgtaat cgttgctgat gaatatcttc tgctcacata aaaatcacac
     3481 aataatattg ataaatcaga ttatcttacc tttacaacat tgcgttaaca gtcaatgaca
     3541 cttcttgaat aaaaatattg ctaatcaatg agttattcct catttaagat tattctcatt
     3601 cacgtaaaaa acataattcc tatcatcaca gccacgctca ttttgaatta tctgaataat
     3661 agcgagcgtt ctttagttaa gcagatctta attgaagacg aaattattgt gcgtgcaact
     3721 tacttaatac cggacatcta agttgaagaa aaaaatactt gccttcgggc ttatctcagc
     3781 attgttctgc tccacgccag cgatggcgga tatgaatcgc accacgaaag gtgcattgct
     3841 aggcgcaggc gttggtttac ttactggcaa tggtgttaat ggcgtactga aaggtgcagc
     3901 tgttggcgct ggtgttggtg cagtaacaga aaaaggccgc gacggtaaaa atgcgcgtaa
     3961 aggtgcaaaa gtaggtgccg ccgttggtgc tgtcactggc gttctgaccg gcaatggcct
     4021 cgaaggggcg attaaaggtg ccgtgattgg cggtacgggt ggtgcaattc tgggtaaaat
     4081 gaaataagga atgatgatga aaaaatttgc tttactggcg ggcctgtttg ttttcgcacc
     4141 aatgacctgg gcgcaggact acaatattaa aaacggttta ccgtcagaaa cctatattac
     4201 ttgcgcagaa gccaacgaaa tggcaaaaac tgacagcgca caggttgcag aaattgttgc
     4261 ggtaatgggt aatgccagcg ttgccagccg tgatttaaaa attgagcaat ctccggaact
     4321 gagcgccaaa gtggtagaaa aactgaatca ggtttgcgct aaagacccgc aaatgctgtt
     4381 gatcacggca attgatgaca ccatgcgtgc tatcggcaaa aaataatatt tcatatgtac
     4441 cgcgtcgatg aatacgacgc ggttttttag ctaacggcgg gatcagaact tatatttcag
     4501 gcccaccatc actgcggtgt cattgtagcc attatcaccc agctgcacgc ccacattccc
     4561 ccagacgctg gccgctggat tcaggttgcc atttacgcca agtttaattt cccccaaatt
     4621 actcgcccca tcttgttcga ctttcacacc gttcattgag acagcaaaat ctttactgtt
     4681 atggatccag ttcatttcaa caaaaggttc aaagtcgtca ccgtgcggac cgctgttttt
     4741 ctcctgagta cgaataaagg tgcggaaacc aagtcgggtc tggatgttgt tatttgcgtc
     4801 attctcaata cgtgagccat tggcttcggt gtgcgcatta tgatcgacgc ccatccagat
     4861 agcctgtgcc tgtggctgga atatccacgt gtatttcgcc gcttccagac caaaggattt
     4921 attcagggca aagccctaac ccgcttccag cgagacggtt gcgcctttcg cactatagga
     4981 ttcataggct aattcatccc ctttcaccga gtttttaaac cagctatatt gcgcccaggc
     5041 gtcaatgtat gcgccttttt tactgatgtc atcggcaaac caagtggcat acagccctgc
     5101 gcaatagcct ctgacactcc ctttcgaacg ataatccgac acgctggaat gagttgagtt
     5161 gtagtcgcgg gcataaccag ccatcactcc caaacgccaa ctgtcactgt cggtaaaacc
     5221 accggttaac agatcggccc ctaactgcga gacgtagcga tgcgaggtcg ttctcaactg
     5281 tccgttgctg tcacgccagg cattatgccc gccaatttga cgtagccaaa gtcggcttga
     5341 acgctcctgt tcagttacag gatcgatgta gcgcatttca cccgcacggt cgttcagacg
     5401 cataacaaaa agagtgttag cggctgccag gttggcgacg taacttccag cttcggggcg
     5461 caggacgggg gtaggcgttt ctgttggttc tgaatttccc tctgagctgt tatcctcctc
     5521 attcactgac tgataacttg tcaaatacca gtttttgcct tgttgtttta gttgatattc
     5581 gaaagctcca gctgcaatcc ttgcatcacc ttgtctgaag gcttctgctg gagattcatc
     5641 gccattcaca gttatgagtt cgatcccgtt tagcgtggcc gcgccgcttc ctccagcatt
     5701 tttcacatag acggtagttg aacccgaagt attaccctca acaataagtc tgtccgtagc
     5761 cgatttatca tcacctaata cggtgcggat attaagctga ccattattac cgacataatt
     5821 accttttacg gttaatgttt ttccttgggt aaatgtttga ccatcatcat acgaaagatt
     5881 gataatactg tctgaattag tcagatgggt aacaacggag tcatctttca tattccagat
     5941 tgtattttct gaaagcttca gcgtggttgt gccgctaacg agtttagtcg ctccatttag
     6001 aatagagtcg gacgaaatta tgtttaagtc acctccagta ttatta
//
LOCUS       DAJVUY010000207         6042 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.208, whole genome shotgun sequence.
ACCESSION   DAJVUY010000207 DAJVUY010000000
VERSION     DAJVUY010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.208"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..2005
                     /locus_tag="OQQ72_003840"
     CDS             <1..2005
                     /locus_tag="OQQ72_003840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS2013400.1"
                     /translation="YSALISEFKTFWHSYQREWQLYMLAALPIEKTAQAWNVLSKEPH
                     VGVEFVMTHLQLAGLQGFIHSFSRYPQEALPVAQYFAAIELAPLIARAFNKLKTLREN
                     ARTWLLKYPEHAITGLLPSALDKAGEAQDNARAALRMLTENGHQPLLQEIARRYNQPE
                     VTDAVNALLALDPLDNHPTKIPTLPAFYQPSLWTRPVLKANAQSLPDSALLHLGEMLR
                     FPQEEALYPGLLQVKDACTADSLAEFVWDLFTAWLTAGAPSKESWAFTALGVLGNDDT
                     ARKLTPLIRAWPGESQHKRATVGLDILAAIGSDIALMQLNGIAQKLKFKALQERAKEK
                     IADIAESRELTVAELEDRLAPDLGLDDNGSLLLDFGPRQFTVSFDETLKPFVRDASGS
                     RLKDLPKPNKSDDESRSNDAVNRYKLLKKDARIVAAQQVARQESAMCLRRRWSPENFK
                     LFLVEHPLVRHLTRRLIWGVYSAENQLQACFRVAEDNSYSTADDDLFTLPEGGISIGI
                     PHVLEISPTDAAAFGQLFADYELLPPFRQLDRNSYALTGAERNASELTRWAGRKCPSG
                     RVMGLANKGWIKGTPQDGGWIGWMIKPLGRWSLVMEIDEGFAVGMSPAELSAEQLLSK
                     LWLWEGKAESYGWGSNSTQEAQFSVIDAITASELINDIEALFE"
     gene            2015..2257
                     /locus_tag="OQQ72_003841"
     CDS             2015..2257
                     /locus_tag="OQQ72_003841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005069643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS2013401.1"
                     /translation="MDKELPWLADNAQLELKYKKSKTPLSHRNWPGEPVSVITESIIQ
                     TLGDELLQKAEKKKRLSGVMKIFHWSGSPPSRRPST"
     gene            2254..5646
                     /locus_tag="OQQ72_003842"
     CDS             2254..5646
                     /locus_tag="OQQ72_003842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001440040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4132 domain-containing protein"
                     /protein_id="HCS2013402.1"
                     /translation="MIGEHKPSVPARTMAALACIAQNDSQQLLDEIVQQEGLEYATEV
                     VIARLFIARCYESDPLVVTLQYQDEDYGYGYRSETYNEFDLRLRKHLSLAEESCWQRC
                     ADKLIAALPGITKVRRPFIALILPEKPEIANELVGLECPRTHFHSKKWLKVVANDPTA
                     VRKLEHYWSQDIFSDREASYMSHENHFGYAACAALLREQGLAAIPRLAMYAHKEDCGS
                     LLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFPHATLAALAELLALTEPPARPGY
                     PIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAEEVMQWLSTQARAVLNSYLSAPPK
                     PVIDSTDNSNLPEILVSLPWRSKKKMTAPRLDLAPLELTPQVYWQPGEQERLAATESA
                     RYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNYILPGKLDAARNSLIVQWHYYQG
                     RVEEILNGWNSPEAQLAEQALRSGHIEALINIWENDNYSRYRPEKSVWNLYLLAQLPR
                     EMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLLLAFSHRPKETFPLILNFGATEL
                     ALPVARVWRRFAAQRDLARQWILQWPEHTASALIPLVFTKPSDNSEAALLALRLLYEQ
                     GHGEFLQTVANRWQRTDVWSALEQLLKQGPMDIYPARIPKAPDFWHPAMWSRPRLITN
                     NQPVTGDALEIIGEMLRFTQGGRFYSGLEQLKTFCQPQTLAAFAWDLFTAWQQAGAPA
                     KDNWAFLALSLFGDESTARDLTTQILAWPQEGKSARAVSGLNILTLMNNDMALMQLHH
                     VSQRAKSRPLRENAAEFLQVVAEDRGLSQEELADRLVPTLGLDDPQALSFDFGPRQFT
                     VRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPEALARLKGLKKDATQVSKNLLPR
                     LEAALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWGVYPANEPRCLLKAFRVAAEGEF
                     CNAQDEPIDLPADALIGIAHPLEMTVEMRSEFAQLFADYEIMPPFRQLSRRTVLLTPD
                     ESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAFVYDLGEYRLVLKFSPGFNHYNV
                     DSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSAPDVIFH"
     gene            5708..>6042
                     /locus_tag="OQQ72_003843"
     CDS             5708..>6042
                     /locus_tag="OQQ72_003843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013403.1"
                     /translation="MIVQKELVAIYDYEVPVPENPFSFRLEIHKCSELFTGSVYRLER
                     FRLHPTFHQRDREDVDPLINDALIYIRDEFIDERKLRGESPEPVPVIFNCELQNIFNQ
                     LIEYYFIKVG"
BASE COUNT         1547 a         1564 c         1526 g         1405 t
ORIGIN      
        1 ttattctgcg ctgatcagcg aatttaaaac cttctggcac tcctatcaac gggaatggca
       61 gctttacatg ttagccgccc tgcctatcga aaaaacagcg caggcgtgga atgtcctcag
      121 taaagagcca cacgtcggtg tcgagtttgt catgacgcac ctgcaactcg ctgggttaca
      181 gggttttatt cactcctttt cacgctatcc acaagaagct ctacctgtag cacaatattt
      241 tgcggctatc gaattagcgc cactgattgc ccgtgccttc aacaaactca aaacgctacg
      301 cgaaaacgcc cgcacctggc tgttgaaata cccggaacat gccattaccg gcctgctgcc
      361 ttcggcgctc gacaaagccg gtgaagcaca ggataacgcc cgcgctgcct tgcgtatgct
      421 taccgaaaat ggtcatcagc cattactgca agaaatcgcc cggcgttata accagccgga
      481 agtaaccgac gcggtgaacg ctctgcttgc gctcgatccc ttagataatc acccaacaaa
      541 aatccccact cttccggcct tttatcagcc atcgctctgg acgcgcccgg tattaaaagc
      601 aaacgcccaa tcactgccag atagtgccct cctccacctc ggcgaaatgc tccgcttccc
      661 tcaggaagag gctctgtatc cgggattatt gcaggtgaaa gatgcctgta ccgccgactc
      721 actggctgaa tttgtctggg atctgtttac cgcctggctg actgcgggcg cgccgtcgaa
      781 agagagttgg gcgtttactg cgttaggcgt tctcggtaac gatgataccg ctcgcaaact
      841 gacgccatta atccgcgcct ggcctggtga atcccagcat aaacgcgcca ccgttgggtt
      901 ggatattctc gccgctatcg gtagtgatat tgccctgatg cagcttaacg gcatcgccca
      961 gaaacttaaa ttcaaagcat tacaggagcg ggcaaaagaa aaaattgccg acattgccga
     1021 gagccgcgaa ctcacggtgg cggagcttga agatcggtta gcaccggatc tcggtctgga
     1081 tgataacggt tcgttgctgc tggatttcgg cccacgccag ttcaccgtca gctttgatga
     1141 aaccttaaaa ccgtttgtgc gtgacgcttc cggcagccgc ctgaaagacc tgcccaaacc
     1201 aaacaaaagc gatgatgaat cgcggtcgaa cgatgcggtt aaccgctaca aattgctgaa
     1261 aaaagatgcg cgtatcgtcg ccgcccagca ggtagcaagg caggaatccg ccatgtgcct
     1321 gcgtcgccgc tggtcgccag aaaactttaa gctcttcctg gttgagcatc cgttggttcg
     1381 ccacttaacc cgccgtctga tttggggcgt ttatagcgcc gaaaaccagc tacaggcgtg
     1441 ctttagggtg gcggaagata acagctacag caccgctgac gatgatcttt tcaccctgcc
     1501 ggaaggcggt atctctatcg gcattcctca cgttctggaa atatcaccga cggatgctgc
     1561 cgcctttggt cagctttttg ccgactacga actgctacca ccattccgtc agcttgaccg
     1621 taacagttac gccctgacag gagccgagcg caacgccagc gaactgaccc gctgggcagg
     1681 cagaaaatgc ccgagcggtc gggtcatggg gctggcgaat aaaggctgga taaagggcac
     1741 cccgcaggat ggaggctgga tcggctggat gatcaaaccc ctgggccgct ggtcgttagt
     1801 catggaaatc gatgaaggtt ttgcggtagg catgtcgcca gccgaactca gcgctgagca
     1861 gctcttaagc aagctgtggc tatgggaagg caaagcagaa agctatggct gggggagtaa
     1921 ttcaacacag gaagcgcagt tctccgtaat cgatgccatc accgccagcg agctaattaa
     1981 cgatattgaa gccctgtttg aataaggaaa gagcatggac aaggaattac cgtggctggc
     2041 ggataacgcc caactggaac tgaaatataa aaaaagcaaa acgccgctca gtcatcgcaa
     2101 ttggccgggc gaaccggtgt ctgttatcac tgaaagcatc attcagacac tgggtgatga
     2161 attgctacaa aaagctgaga agaaaaaaag attgtctggc gttatgaaaa tttttcactg
     2221 gagtggcagt ccgccatcac gcaggccatc aacttgatcg gcgaacacaa accctcagtc
     2281 ccggcccgga caatggcggc gctagcctgt atcgcgcaaa atgacagcca acagttgctc
     2341 gacgaaatcg tccaacaaga ggggctggaa tatgcgactg aggtggtaat tgcacgcctg
     2401 tttattgcgc ggtgttatga gagtgatcct ctggtagtga cattgcagta tcaggacgag
     2461 gattatggct atggttatcg ctcagaaacc tataacgaat tcgatctccg actgcgtaag
     2521 catctctctc tggcagagga aagctgctgg cagcgttgcg ccgacaaact cattgccgca
     2581 ctaccaggaa taaccaaagt tcgccgccct tttattgcgc tgatcctccc ggaaaaacca
     2641 gaaatagcca atgagttggt aggccttgaa tgcccgcgaa ctcattttca ttctaagaag
     2701 tggttaaaag ttgttgctaa tgaccccaca gcggtgagaa aactcgaaca ctactggagc
     2761 caggatatat ttagcgatcg agaagccagc tacatgtcgc atgaaaacca cttcggctac
     2821 gcggcctgcg ccgccctttt gcgcgaacaa ggactggcag ccattccgcg cctcgcgatg
     2881 tatgcccata aagaagattg cggcagtctg ctggtacaaa ttaaccatcc gcaagtcatc
     2941 cgcaccttgc tactggtggc tgataaaaac aaacccagcc tgcaacgtgt agctaaatac
     3001 cataaaaact tcccccatgc gacgctcgcc gcactggcag aactgctggc gttaacagaa
     3061 ccaccagccc gccctggtta tccaatcatc gaagacaaaa agctgcctgc acagcaaaaa
     3121 gcacgcgatg aatactggcg tacgctgtta caaacgctga tggcatcgca gccacaactg
     3181 gcagaagagg tgatgcagtg gttaagtact caagccaggg cagtgctgaa tagttattta
     3241 tcggcaccgc ccaaaccggt tattgatagt accgataaca gcaatctgcc tgaaatcctc
     3301 gtttcgctac cgtggcgtag taagaaaaaa atgacagctc cacgtcttga tttggcaccg
     3361 ctcgaattaa ctccgcaagt ttactggcaa ccaggcgaac aagagaggct tgccgccact
     3421 gagtctgccc gttatttcag cacggaatct cttgcgcaac gcatggaaca aaaaagtgga
     3481 cgagttgtat tacaggaact gggttttggg gatgatgtat ggctgtttct gaattatata
     3541 ctccccggaa aactggatgc tgcacgcaat tcactcattg ttcagtggca ttactaccag
     3601 gggcgggttg aagagatcct gaatggctgg aactccccgg aagcacaatt agcagaacag
     3661 gcgctccgca gcggtcacat agaagcgtta attaacatat gggaaaatga caactactca
     3721 cgttatcgtc cggaaaagag tgtctggaac ctgtatttat tggcacagtt gccgcgtgag
     3781 atggctttga ccttctggct gcgtatcaat gagaaaaagc atctgttcgc gggtgaggac
     3841 tattttctca gtatcctcgg attggatgcg ctaccaggtc tgctgttggc tttttcacat
     3901 cgtccaaaag aaacatttcc gttaatttta aattttggcg caacagaact ggcgctgcct
     3961 gttgcccgcg tctggcgacg tttcgcggcg cagcgtgatc tggctcgcca gtggatttta
     4021 caatggccgg aacatacggc tagtgcactt atccctcttg tctttaccaa acccagcgat
     4081 aatagcgaag ccgcattact tgccctgcgt ttactgtacg aacagggaca tggcgaattt
     4141 ctacaaaccg tggcaaaccg ctggcagcgt acagatgtat ggtctgccct ggagcagttg
     4201 cttaaacagg gtccaatgga catttacccg gcacgcattc caaaagcccc tgatttctgg
     4261 catccggcaa tgtggtccag gcctcgactt atcactaata atcagcctgt taccggtgac
     4321 gctctggaaa ttatcggcga aatgctgcgc tttacccagg ggggacgttt ttatagcggg
     4381 ctggaacaac tgaaaacgtt ctgccagcca caaacgctgg ccgcttttgc ctgggatctc
     4441 ttcactgcct ggcaacaagc gggggccccc gcaaaagaca actgggcatt tctggcatta
     4501 agtctctttg gtgacgaaag cacggcacgg gatctgacga cacagatcct cgcctggcca
     4561 caagaaggca aatctgcccg tgctgtcagt ggtctgaata tacttaccct gatgaataat
     4621 gatatggcgc tgatgcagct gcatcatgta tcacaacggg cgaaatcacg ccccttacgt
     4681 gaaaacgcag cggaatttct tcaggtggtc gcagaagatc gcgggctaag ccaggaagag
     4741 ttagcggaca gattagtccc aaccctgggc cttgatgatc cgcaggcgtt gagttttgat
     4801 tttggtcccc ggcagtttac cgttcgcttc gatgaaaacc tcaacccggt tatctttgat
     4861 cagcaaaacg ttcgccagaa aagcgttccc cggttgcgcg ccgatgacga tcaactgaaa
     4921 gcgcccgagg cactggcccg actaaaaggg ctaaaaaaag atgctactca ggtgagcaaa
     4981 aacctgctcc cgcgtcttga agctgcccta cgtaccaccc gacgctggtc gctggcagat
     5041 tttcattctc tgtttgttaa tcatcccttt acccgtctgg ttacccagcg attaatatgg
     5101 ggggtttatc cggcaaatga accgcgttgt ttactcaaag cctttcgtgt ggccgcagag
     5161 ggggagttct gcaatgcgca agatgagcca attgacctgc ctgcggacgc tctgattggc
     5221 attgcccacc cgttagaaat gacagtagaa atgcgcagtg aatttgcaca gctttttgcc
     5281 gattacgaaa ttatgccgcc ttttcgccag ttgtcgcgcc gcacggtgct gctcacacct
     5341 gacgagtcaa ccagtaacag cctgactcgc tgggaaggta aatccgctac cgttgggcag
     5401 cttatgggaa tgcgatacaa aggctgggag tcaggttatg aggacgcatt tgtctatgac
     5461 ctgggtgagt accggctggt ccttaagttt tcacccggtt ttaaccacta caatgttgat
     5521 agcaaagcgc taatgagctt ccgttctctt cgagtgtacc gtgacaataa atccgtaact
     5581 tttgccgaac ttgatgtgtt tgatttgagt gaggcgttaa gcgcacctga cgtcattttc
     5641 cattaaaaac acagcgggca gtgatgcaac tgcccgttat caacacgact taccagcggg
     5701 gaaagcgatg atcgtgcaaa aagagctggt tgctatttac gattatgagg tccctgtacc
     5761 tgaaaatccg ttttccttca gacttgagat ccataaatgc tctgaattat ttacaggttc
     5821 cgtctatcga ctggaacggt tccggctaca tccaacattt catcaacgtg atcgagagga
     5881 tgttgacccg ctaataaatg atgcgttgat ttatataaga gatgagttta ttgatgagcg
     5941 gaaattacga ggtgaatcac ctgaacctgt accagtaatt tttaattgtg aactacagaa
     6001 tatattcaac caactaatag aatattactt tattaaagtg gg
//
LOCUS       DAJVUY010000208         6039 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.209, whole genome shotgun sequence.
ACCESSION   DAJVUY010000208 DAJVUY010000000
VERSION     DAJVUY010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6039
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.209"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            30..923
                     /locus_tag="OQQ72_003844"
     CDS             30..923
                     /locus_tag="OQQ72_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2013404.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRAQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            1058..2278
                     /gene="mlc"
                     /locus_tag="OQQ72_003845"
                     /gene_synonym="dgsA"
     CDS             1058..2278
                     /gene="mlc"
                     /locus_tag="OQQ72_003845"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HCS2013405.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNLGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLHG"
     gene            2403..3098
                     /gene="bioD"
                     /locus_tag="OQQ72_003846"
     CDS             2403..3098
                     /gene="bioD"
                     /locus_tag="OQQ72_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS2013406.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(3051..4343)
                     /gene="clcB"
                     /locus_tag="OQQ72_003847"
     CDS             complement(3051..4343)
                     /gene="clcB"
                     /locus_tag="OQQ72_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HCS2013407.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(4502..5116)
                     /gene="dmsD"
                     /locus_tag="OQQ72_003848"
     CDS             complement(4502..5116)
                     /gene="dmsD"
                     /locus_tag="OQQ72_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HCS2013408.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            complement(5159..6013)
                     /locus_tag="OQQ72_003849"
     CDS             complement(5159..6013)
                     /locus_tag="OQQ72_003849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HCS2013409.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
BASE COUNT         1575 a         1550 c         1572 g         1342 t
ORIGIN      
        1 ttaataatct caaataagat gttttaaata tgaatattga acttcgtcat ctgcgttact
       61 ttgttgctgt tgcggaagag ctgcatttcg ggcgcgccgc tgcccgcctg aatatttcgc
      121 aaccaccgct aagtcagcag attcaggcac tggagcaaca aattggtgcc cgactgctgg
      181 cacgaactaa tcgcagtgta ttgctgacgg cagcaggaaa acagtttctt gcagatagtc
      241 ggcaaatcct gtctatggta gatgacgctg ccgctcgcgc tgaaagactg catcagggtg
      301 aagcggggga gttgcgcatt ggttttactt cgtccgctcc ttttattcgg gcggtgtccg
      361 atacgttatc gctgtttcgc cgtgattatc ccggtgtcca tttacaaacc cgcgaaatga
      421 acactcgtga gcaaatcgct ccgctcattg aaggaacgct ggatatggga ttgctgcgta
      481 acacagcgtt accggagacg cttgaacacg cagtcatcgt ccatgaaccg cttatggcga
      541 tgatcccgca cgatcatccc ctggcaaata acccgaatgt aacgttggct gaactggcga
      601 aagaaccctt cgtctttttt gatccgcacg tcgggacagg gctgtatgac gatattctcg
      661 ggctgatgcg acgttaccat ttgacgcccg tcatcactca ggaggtgggc gaggcaatga
      721 ccatcatcgg tctggtttcc gccggtctgg gtgtttcaat tttgcctgct tcatttaaac
      781 gtgctcagct caacgaaatg cgctgggtgc cgattgctga agaggatgcg gtttctgaaa
      841 tgtggttggt ctggccgaaa catcatgaac aaagtccagc ttcgcgtaac tttcgtattc
      901 atctgctgaa tgctctcagg tgagggaaat ttcagcgaaa aagcccgaaa aatgtgctgt
      961 taatcacatg tctaagtaaa aatttgacga cacgtattga agtgcttcac catagcctac
     1021 agattatttc ggagcgcgaa aatataggga gtatgcggtg gttgctgaaa accagcctgg
     1081 gcacattgat caaataaagc agaccaacgc gggcgcggtt tatcgcctga ttgatcagct
     1141 tggtccagtc tcgcgtatcg atctttcccg tctggcgcag ctggctcctg ccagtatcac
     1201 taaaattgtc cgtgagatgc tcgaagcaca cttggtgcaa gagctggaaa tcaaagaagc
     1261 ggggaaccgt ggccgtccgg cggtgggact ggtggttgaa actgaagcct ggcactatct
     1321 ttctctgcgc attagtcgcg gtgagatttt ccttgctctg cgcgatctga gcagcaaact
     1381 ggtggtggaa gagtcgcagg aactggcgtt aaaagatgac ttgccattgc tggatcgtat
     1441 catttcccat atcgatcagt tttttatccg ccaccagaaa aaacttgagc gtctaacttc
     1501 gattgccata accctgccgg gaattattga tacggaaaat ggtattgtac atcgcatgcc
     1561 gttctacgag gatgtaaaag agatgccgct cggcgaggcg ctggagcagc ataccggcgt
     1621 accggtttat attcagcatg atatcagcgc atggacgatg gcagaggcct tgtttggtgc
     1681 ctcacgcggg gcgcgcgatg tgattcaggt ggttatcgat cacaacgtgg gggcgggcgt
     1741 cattaccgat ggtcatctgc tacacgcagg cagcagtagt ctcgtggaaa taggccacac
     1801 acaggtcgac ccatatggta aacgctgtta ttgcgggaac ctcggctgcc tcgaaaccat
     1861 cgccagtgtg gacagtattc ttgagctggc acagctgcgt ctcaatcaat ccatgagctc
     1921 gatgttacat gggcaaccgt taaccgtgga ctcattgtgt caggcggcat tgcgcggcga
     1981 tctactggca aaagacatca ttaccggggt gggcgcgcat gtcgggcgca ttcttgccat
     2041 catggtgaat ttatttaacc cacaaaaaat actgattggc tcaccgttaa gtaaagcggc
     2101 agatatcctc ttccctgtca tctcggacag catacgtcag caggcccttc ctacgtatag
     2161 tcagcacatt agcgttgaga gtactcagtt ttctaaccag ggcacgatgg caggcgctgc
     2221 gctggtaaaa gacgcgatgt ataacggttc tttgttgatt cgtctgttgc atggttaaca
     2281 ttttttaact gttctaccaa aatttgcgct atctcaattt gggccaggaa agcataactt
     2341 agactttcaa ggttaattat tttcctagtt tatatttgtg aagcataacg gtggagttag
     2401 tgatgctgaa gcgtttcttt attaccggta cagacacttc tgtagggaaa acggtggttt
     2461 cccgcgcatt gctacaagcg ttagcctccc agggaaaaac agttgcggga tataaacccg
     2521 tagcgaaggg gagcaaagag acacccgaag ggctgcgtaa taaagatgcc ctggtgttgc
     2581 agagtgtttc aaccatcgaa ctgccttatg aagcagttaa tcctatcgcg ttaagcgaag
     2641 aagaaagtag cgtggcgcac agttgcccaa tcaattacac cctcatttca aacggcctgg
     2701 caaacctgac cgataaagtc gatcatgtcg tggtagaagg gactggcggc tggcgcagtc
     2761 tgatgaatga tttgcgtcca ctctctgaat gggtggtgca ggaacagttg ccggtgttga
     2821 tggttgtcgg tattcaggaa ggttgcatta accatgcact gctaacagct caggcgattg
     2881 ccaacgacgg gctgccgctc attggctggg tggctaaccg aatcaaccca ggactggcgc
     2941 attatgcgga aatcattgat gtgctgggta aaaaacttcc ggcaccgctc attggtgaac
     3001 tgccttatct gccgcgcgcc gaacagcgag aactggggca atacatccgc ttagctatgc
     3061 tgcgcagtgt gctggcggta gatagagtca cggtgtaacg tccgcgaaat taccgacgca
     3121 atgacgcagg caatcaataa accggggagt agctgatact ccccggtcat ttcacatatc
     3181 atcaacgtcg acataatcgg cgcgtgcgtg gttgccgcca acagtgtcgc catctcggtc
     3241 aatccgagta aaagcgtaat ttcttcgcca tcagggaacc ataatcccag gctacgacca
     3301 tacaacatgc caatggcaag accgataaat agcgtcggtg taaagacacc accgggtgcg
     3361 ccggaaccgc tactcgccag cacggcacac agtttacaaa ggaagatccc ggcaatgatc
     3421 attaacagtg gtggggcggt taaaaaggat tgtacggtgc tatagccgtt gccccacact
     3481 gcaggtgtga acagggaaag cagacccacg atcaacccgc ctagtgccag ttgccagggc
     3541 ggcgcaagtt tgagactcac aaatccacga tgacaggcgt tcattaacgt taacaacagt
     3601 ggtccgcaca gacctgccag cacacctgta ctgataatca gcgcatagtc acgagcctga
     3661 accgtcactg agagttgtac gttgtagagt aacgcgtcgc tatgattaat cagattgcta
     3721 accagcaatg ccacgacggc ggaaataatc accgggccga gagaggccaa catcatagtg
     3781 ccaaacagca cttcggctat aaataaactg ccagcaagcg gggcacgata ggccgcagcc
     3841 attcccgccg cggcgccaca ggcgatccat aatttccact cctggcgtgg cgtaaaacgt
     3901 tgggcaaaac aggaggcggc aagggcagct aaaagaatca tcgcaccttc gcgaccaatt
     3961 gcactgccgc tggttactac cagcagcgag gcaagcgatt taaccaggct tgctgcgtaa
     4021 tcgaactgtc catcggtttg caacgcttcc atgtaatcgg tcggcgcatg agggcgttgt
     4081 tgggtaaatt tctgccagcc catcagcaac aaacccgccg ccagtccgcc gagcgccgga
     4141 gttagcaacc gtcgccaggg ggaaaggttt gtcgctgcat tgaccagact gccggagtca
     4201 ttattgagga acaaccactc cagtagcagc atcgcatgac gaaacccggc aacggcaaag
     4261 gccgcgagaa taccgacgac tgttgcgata agcagacggc ggaacatagt gcgcagatcc
     4321 ggatagatgt gtagatgatg catgagcaga aatgggcaat gaaacacggg cgactatttt
     4381 gcggcaaaag aggccagccg caaaagcagt gcgtgcttta agagataaaa aaacgtgaca
     4441 ctgtaaccta ttattgccgg attgcgcgta atcgtcacca tccggcaata ttacggtgat
     4501 cctatcgaaa cagcggttta accgcgacag gaattaacag ttgtgattgc cattgcgcca
     4561 gcgttaagcg agacagttca cccagtgcac ggtagaaagg gtgttctgct ttttcgataa
     4621 aaacatcaag aaaacgtgtt gaccacggaa aaaggtgcca tgccagcaat tcttcgcatt
     4681 ctgtctggcg accattctcc gccaaccacg cagccatcaa cagcagtgaa ccaaaatgat
     4741 cttccggttc gtattgcttc atttcaaact gaatgccttt ctcgcgcatc cactgacgaa
     4801 gtgccaatgt tgaatcgcca aacagcacag attcgcgatc cagccagacc gacccccacg
     4861 gcggagacgg cagtgcccac gggccgacaa acaaacgctg ccaggcctgg gcgtgagtct
     4921 cttcacactg tgtctgaaaa gccgtcacca gcggcgctaa tgacgcttct ggtagaggcc
     4981 actgagtttc ccagccgtca ctggtgagta ccgcaaccag aggtgcggct tccgcactct
     5041 ctggagcgta ataaaacagc gcgcccaaca cgcgcgccgc gacagaaaaa ttatcttgct
     5101 gtgaaaaatg ggtcattcct aacatcctga aatgtgcggg ttgccccgca ccaatttgtt
     5161 aacctgcaat agccattcct actgtcatgt gcaggccata aaagagcaca cgcccgatca
     5221 tctcaccgcc aagtatgagg attagcccca gaataagtcc ggcaacgtga ggttcacggc
     5281 gacgaatgag cgggcaaagc cagcatccaa gacttgcgca taacaatacc acacgccaga
     5341 cctgtaagga ggcgtaatct ggtaccagtg cgctggcttg ttgcacggat gagtgaatag
     5401 acgccagaga caaaccttgc agcacaatca ccccggcaca agcgatcagc gccagaacgc
     5461 taatgatggc aaatggtgtg gtattaaatg taacgcgagc tgcccgcaga attgcggcag
     5521 caagtattgg accgctcaac aataccgtca ggaagaaagc cagcgtagtg taaccgttat
     5581 gccaggttgg cacggtgtcg atttgataca cgcaggtcat catccagacg aaaatgacgc
     5641 cgagcgccat gctgacaagt aaccagagtt tccccaacgc ttgcggcatt ttaccgatga
     5701 ccgccaccag ccaccatagt ccaccaacgg caaaaaatat ggaaccggca gcaatctcgt
     5761 tactcagacc agaagctccg attcgattca gcgagttaaa cgctcgcagt ggcgatccca
     5821 ggtgcatgac agaggcaata aacccgatgc ccatcaacag ccagaggaaa aacatgccac
     5881 ggacaatacg ctgacggtct gcgtcatttt tggcggcgaa ccagccaatt ccgctaacaa
     5941 tcagcgcgcc tactacgcat tgacccaata cggtaaagat aaccagtggc cattcatgcc
     6001 atccatttcc cattttacac ttcctccgga ttagccaga
//
LOCUS       DAJVUY010000209         5948 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.210, whole genome shotgun sequence.
ACCESSION   DAJVUY010000209 DAJVUY010000000
VERSION     DAJVUY010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.210"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(559..864)
                     /locus_tag="OQQ72_003850"
     CDS             complement(559..864)
                     /locus_tag="OQQ72_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008325193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013410.1"
                     /translation="MGSKIAGVVFLYFAVWGMASVIELQYWRNADTYPVWLTKHLRIS
                     PENNDKSLIRIEMETFDKVCGDKRGLLAVTQKQNGMFMRCDDSPGFFSWFSGVYKVN"
     gene            complement(918..1169)
                     /locus_tag="OQQ72_003851"
     CDS             complement(918..1169)
                     /locus_tag="OQQ72_003851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004182043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HCS2013411.1"
                     /translation="MTNIILCDVTASVSELKNDPVATASARGGYPVEIIDRNRPVFYC
                     VPAALYEQMLDELDEKDLVQTITERQNQPLREVDLNQYL"
     gene            complement(1248..2519)
                     /locus_tag="OQQ72_003852"
     CDS             complement(1248..2519)
                     /locus_tag="OQQ72_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HCS2013412.1"
                     /translation="MFALADVNSFYASCEKVFRPDLRGKPVVVLSNNDGCVIARSAEA
                     KRLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDE
                     CFLDARGISHCMDLEDFGRQLRGHVLSGTGLTIGVGFGATKTLAKSAQWASKEWPQFS
                     GVLALSPENPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTTLQLSLTNPTFIRKN
                     FNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYGEMRQAVCQYAERAA
                     EKLRGERQYCRHISTFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRI
                     WLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFA
                     GRGIAPDWQMKREMLSPAYTTRWKELPVARF"
     gene            complement(2519..2944)
                     /gene="umuD"
                     /locus_tag="OQQ72_003853"
     CDS             complement(2519..2944)
                     /gene="umuD"
                     /locus_tag="OQQ72_003853"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS2013413.1"
                     /translation="MKFIPAVSEASIVKIPLFTERCPAGFPSPAANYTESELDLNEYC
                     IHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVIAEIEGEFTVKRLLLT
                     PRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRRAD"
     gene            3045..4265
                     /locus_tag="OQQ72_003854"
                     /pseudo
     CDS             3045..4265
                     /locus_tag="OQQ72_003854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3-like element ISKox3 family transposase"
     gene            4720..5685
                     /locus_tag="OQQ72_003855"
     CDS             4720..5685
                     /locus_tag="OQQ72_003855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HCS2013414.1"
                     /translation="MTMNLHTQTTAPKASQATSVSPLEQSGSSKTKFSRGKSKARAGA
                     VKTDLYQTVTDSIIAALESGVKPWVCPWVRNGAAVGLPANFSTGTAYSGINIMLLWCS
                     AAKQGFQDERWLTYKQAQELGGQVRKGEHGTTAIFYKTLEKEDEDGEIEKIPMLKAFT
                     VFNVEQIDGLSIESVPQPVAGFDPLPQAEALMIRSGAKITEQGVKAFYRPATDEIVLP
                     ERFRFADAANFYATGLHELVHWTGAASRLNREKGNKFGSEAYAFEELIAELGSAFLLA
                     DLGITGEVQHESYIASWLKALKGDKRYIFKAAAAASKAHRWLMDC"
BASE COUNT         1420 a         1575 c         1623 g         1330 t
ORIGIN      
        1 ctgggaccac ggtgccacct gtatcgccgg tcaggttatc tgcctgggac cacggtccca
       61 cctgcatcgt cggcacatta ttagttaggg acaacggttc aatcaatgcc tgtcacgaac
      121 aggtattggc ttgtcgccag caacccgttg agcggagtaa tcacgcagca ggacggctgt
      181 tacaggcgat ggtgaaagct ctgttgggat ctgaacgaag catgttgagt gaaatttgca
      241 aaatttcgca gagtatgcgg cttcatcttt aaatttccgc cagcattttt aaagccagct
      301 accgacgctg cgcgttggcc ggcccttcgt ccggcgggta accagtaccg gccgatctta
      361 cgaccctgga tgaacatcat cccgtcagca gcgtctccac tgtgatgtcg tttttcacac
      421 tgtccgatca caaaatagaa cgggcaggga caacatatgg taggaaaagc agctgccaga
      481 gacacaatat attgattacc cacagtaacg ggggataacc atgtgggtaa catattgaaa
      541 gtgcaacacg ttatctgatt aattgacttt gtaaacgccg ctgaaccatg aaaaaaaacc
      601 gggggaatca tcacagcgca taaacatacc gttttgtttt tgggtgacgg caaggaggcc
      661 ccttttatca ccacatacct tgtcaaaggt ttccatttct atccttatca ggctcttgtc
      721 gttattttca ggagagatcc ggagatgttt tgtcagccag acaggatagg tatcagcgtt
      781 acgccagtac tgcaattcaa tcactgaagc cattccccag acagcgaagt ataagaaaac
      841 cacacctgcg attttgctac ccatattgtt ccttaacatt ggcttaatac attccttgct
      901 cctcgcaccg gagcacatca cagatactga ttgagatcca cttcacgcag cggctggttt
      961 tgacgttctg ttatcgtttg caccaggtct ttttcgtcca gctcatcgag catttgttca
     1021 tacaaagccg cgggcacaca ataaaaaaca gggcggttac ggtcaattat ctcgaccggg
     1081 tagccgccgc gggcactggc ggtggccacc ggatcgtttt taagttcgct gacgctggca
     1141 gtcacatcac acagaatgat atttgtcatg gttcccccct gagacaagtc acctgtatga
     1201 tcggtaaagt aagctctggc ggcaagtccc ttctgtcatt tcaacggtca gaaacgggca
     1261 accggcagct ccttccagcg tgtggtatat gccggtgaca gcatctcccg tttcatctgc
     1321 cagtccggcg caataccccg tccggcaaac cagactttcc cgagtccgga atgattaatg
     1381 ccgtcgagta ccttcatcag cgcatcgctg tgcggccgtg gctgcacgtc atcgaacaga
     1441 ttcagctgcg cgacgccgtt cggactgaaa tcattgagca ttatccccgc ttttgcgtag
     1501 cggtggccat cgagccatat cctgtccaga gacctgaccg ctgccgcgat aatgtcccgg
     1561 gtgtcacggg taggggtgtt cagtttttcc gtggccacgt taccgtaata cggctcatta
     1621 accgcaaaag gggatgtctt gatgaaggtg ctgatatgcc ggcagtactg tcgctcaccg
     1681 cgcaactttt ccgccgcgcg ctcggcatac tggcagacgg cctggcgcat ttctccgtag
     1741 gtggtgatcc gctgcccgaa gctgcgactg cagacaatct gctgtttcgg cggcggcgct
     1801 tcctccagcg aaatgcaact ctcgccgttc agctcacgta ccgtgcgctc cagcactacg
     1861 ttgaagtttt tccggataaa tgtagggttc gtcagcgaca gctgcagggt ggtggtgatc
     1921 cccataacgt gcagcttttt cgctatccgg ttccccacgc cccagatttc ttccaccggc
     1981 tgcaggctga gtaattttgc cgttctgcgt ggattttcgg gcgacagcgc cagcacccca
     2041 ctgaattgtg gccattcctt tgacgcccac tgcgccgatt tggccagtgt ttttgtggcg
     2101 ccgaagccga caccgatcgt cagtccggtt ccactgagaa catgcccacg cagctgcctg
     2161 ccaaaatcct ccagatccat acagtggcta attccccggg catccaggaa acattcgtca
     2221 attgagtatt gttcgacgcg gggcgacagc tcttccagca gggcgaccac acggttactc
     2281 aggctcgcgt agagctcgta gttgctggaa aaaacgtaca gtttttcagg aaactgcgcc
     2341 tctttgagct ggaaccaggg ggttcccatc tttataccca gccgtttggc ttcagcactc
     2401 cgggcaataa cgcagccatc gttgttactg agaacgacga caggtttgcc gcgcaaatcc
     2461 ggcctgaaaa ccttctcgca actggcgtag aaggagttga cgtctgccag ggcgaacatc
     2521 agtctgccct ccgggtttta tgaatgaagg ccgtcaccac gccgaaaatt tgcagagttt
     2581 ccggatccgg gtacagggaa gggaagtccg ggttcatcgc ctgcagggct ggccgcggcg
     2641 tcagaagcag gcgttttacc gtaaattcac cctcaatttc cgcgataaca atatccccgt
     2701 gccgcggctg ttctgcttta tccacgacca tcagatcgcc ggaatagagg ccaatatcag
     2761 tcattgagtt gccaatcgct ctgacaaaat aggtggagtg gcgccggtga atgcagtact
     2821 cattcagatc cagttcagac tcagtatagt ttgctgccgg tgacggaaaa cccgcagggc
     2881 atcgctctgt gaacaaagga atttttacta tgctggcttc tgatactgca ggaatgaact
     2941 tcatcgtttt ttccctcgct taaaactgta tatgcatggg tcttcccttg ttgtggtggc
     3001 tgaaggcatg ataatggtgt atttaatcgc cagaggtcac cgccatggac gaaaagtccc
     3061 tctacgctca tattctcaac ctgtccgatc cgtggcaggt aaagtccctt tctctcgatg
     3121 aaaatgccgg ttctgttact gtcactattg agatcgctga aaacacccgg ctagcctgtc
     3181 cgacctgcgg taaatcctgt tctgttcacg atcaccgtca tcgtaaatgg cgccatcttg
     3241 atacctgcca gttcaccact attgttgaag ccgatgttcc acgaattatg tgtccggagc
     3301 atggctgcct gacgttgcct gttccgtggg ctggccccgg aagccggtat acgttgctat
     3361 tcgaatcgtt cgttctctca tggctgaaaa tcagcaccgt tgatgctgtc aggaagcaac
     3421 ttaagctcag ttggaatgcg gttgacggca ttatgacccg ggcagttaag cgaggtcttg
     3481 cccggataaa aaagccatta tccgcccgtc atatgaatgt ggatgaggtc gcctttaaaa
     3541 aaggacatcg ttacataacg gtgatctccg atcgcgatgg tcgggcgctg gccttaacgg
     3601 atgatcgcgg cacagagagt cttgccggct atcttcgcac gctcactgat gggcagttgc
     3661 tggctatcaa aacgctctca atggacatga acgcgggcta tataagagca gcgcgtatcc
     3721 acttacccag tgcggttgag aaaatcgcct ttgaccgctt ccatgtggcg aagcaactgg
     3781 gcgaggtagt tgataaaacc cgtcagaatg aacatccgca cctccctgtt gaaagccgac
     3841 accaggcaaa aggaacccgc ttcctgtggc agtacagcga taagtggatg accgaatccc
     3901 ggcaggaaaa gctgatgtgg ctgcgtgcac agatgaagct gacgagccag tgctgggcgc
     3961 tgaaagagct ggcaaaggat atctggaaca ggccatggag cgaggaaaga cggagtgact
     4021 ggcagagatg gttggcgctg gcggctaaca gtgacgttcc catgatgaaa aatgccgcga
     4081 aaacgatagg aaaaaggctg taggggatcc tgaatgcgat gcgacacagt gtctcaaacg
     4141 gaaatgcgga ggcacttaac agcaagatca ggctgctgag gataaaagcc aggggatacc
     4201 gaaaccggga gcgctttaaa ctgggggtga tgttccacta cgaaaagctg aatatggcgt
     4261 tctgagcctt cccaccatga tcggggaaga cccatatgca tacagtataa ggggcggtga
     4321 aatttctgca agtgatgggg ggatagccgg tcagaacgtc cccgaaaaca aaccgccccc
     4381 ggtttcagga agggcgaact gaccggcaga ggcagtgtaa caccgcatgt cacaaaggca
     4441 gcactgacgt cgtcagtgct ttttttaccc gtcctcccgg acgctgaagg gcagtttcac
     4501 ccgtgcagct aaaggggcgg taagtccggg tgtgcacatc gtcattttct cctgtgatgc
     4561 ctttctcctg cgtatcagct tccggtaatc gtcccccgtc acaacctgga cagcaagggt
     4621 aaatggcacg ctgcgcgccc ttgctgacca gaacgactcc gggcaggccg aaccgtcagg
     4681 cgatacgaag acgaaattca cactgacgga gaaacagcca tgacgatgaa cctgcacact
     4741 cagacaaccg cccctaaagc ttcacaggcg accagcgtat ccccgctgga gcagtcaggc
     4801 tcctcaaaaa cgaaattttc caggggcaaa agcaaagccc gtgctggcgc agtcaaaaca
     4861 gacctttacc agacagtaac ggacagcatc attgcagccc tggaaagcgg cgttaagccg
     4921 tgggtgtgtc cgtgggttcg caacggcgca gcggtgggat taccggccaa cttcagcacc
     4981 ggcacggcat acagcggaat taatatcatg ctgctgtggt gtagtgcggc aaaacagggt
     5041 tttcaggacg agcgctggct gacctacaaa caggcgcagg agctgggcgg ccaggttcgt
     5101 aaaggtgaac acggcacgac ggccatcttt tacaagacgc tggagaaaga ggacgaggac
     5161 ggggaaatcg aaaaaatccc gatgctgaaa gcctttaccg tgtttaacgt ggagcaaatc
     5221 gacggcctga gcatcgagag cgtgccgcag ccggttgccg gtttcgatcc gctgccgcag
     5281 gcggaagcac tcatgatccg gagcggggca aaaatcaccg agcagggcgt aaaggcgttc
     5341 tatcgtccgg ccaccgatga aatcgtcctg ccggagcggt tccgcttcgc ggacgcggcg
     5401 aacttctacg ccaccggcct gcatgagctg gttcactgga cgggtgcagc gtcccgcctc
     5461 aatcgtgaaa aaggcaataa gtttggctct gaggcgtatg cgtttgagga actgatcgcc
     5521 gagctgggca gcgcgtttct gttggcggat ttggggatta cgggagaggt gcagcatgaa
     5581 agctatatcg cgtcctggct gaaagcgctg aagggagaca agcgctacat ctttaaagcg
     5641 gcggcagcgg cctcaaaagc gcaccgctgg ctgatggact gctgacagct ggagccctgc
     5701 ggtgcagggc ttcagaattt ttgaaagaga gagaatcagg gagggaatta tataagtcac
     5761 tgttttttag aattctgtaa cgcggccggc ctcagctgca ggacgtcctg cagctgaggc
     5821 cggcacggaa aaataaaccg gacagattca aaaaaaatga accctttttc aggcggtagc
     5881 cgttacgtat ccgggatacg taacggcgcg atgtcttacg taaaaaatga cgtaacggct
     5941 ttcgccgc
//
LOCUS       DAJVUY010000210         5864 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.211, whole genome shotgun sequence.
ACCESSION   DAJVUY010000210 DAJVUY010000000
VERSION     DAJVUY010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5864
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.211"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..786)
                     /locus_tag="OQQ72_003856"
     CDS             complement(<1..786)
                     /locus_tag="OQQ72_003856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013415.1"
                     /translation="MSLLFAERPLVINTQLAMKIGLNEAIVLQQLHYWLRDTNSGMEC
                     DGVRWIYNTTEQWLEQFPFWSESTLKRAFASLKTLGLLRCEKLNKSKRDMTNFYTINY
                     GSELLDDGKLSESIGSKCAAPSGQNDTMEEVKMKRSIGSKRPNVIGSKWPDDPTENTT
                     EITTENKNTFRPEASQPDPQTAEQDFLIRHPGAVVFSAKKRQWGSQEDLACAQWIWGR
                     IVGLYEQAASDDGEIMRPKEPNWTVWANDVRTMRMLDGRSHMNR"
     gene            complement(767..1288)
                     /locus_tag="OQQ72_003857"
     CDS             complement(767..1288)
                     /locus_tag="OQQ72_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001578395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013416.1"
                     /translation="MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNID
                     VQRVTDEGGAVDQRALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEAIRINDFRLY
                     REISDGKSITYMIAGLNKEYGDVVESGLLFADPAVVDRETDELIEKAIAFKLAYRQQY
                     QQKAGWNYEPSFC"
     gene            complement(1272..1499)
                     /locus_tag="OQQ72_003858"
     CDS             complement(1272..1499)
                     /locus_tag="OQQ72_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS2013417.1"
                     /translation="MFKSDVINFYGTKAKVAKAAGVDPSAVSQWQELVPEGRAMRLQE
                     ASGGELLYDPKVYDEYRKTKRAGRLNNENHS"
     gene            1577..1984
                     /locus_tag="OQQ72_003859"
     CDS             1577..1984
                     /locus_tag="OQQ72_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001003380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013418.1"
                     /translation="MNEKTLGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTA
                     PRGQNLHRLAEVLQCSPTWILFGDEDKTPAPPVSLDSTLDLSEDELEMLRLYRALPKS
                     EQQAQLSELRARVENFNRLFTELLEARKRNKHQ"
     gene            2177..2332
                     /locus_tag="OQQ72_003860"
     CDS             2177..2332
                     /locus_tag="OQQ72_003860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS2013419.1"
                     /translation="MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRW
                     LERNSGE"
     gene            2492..2710
                     /locus_tag="OQQ72_003861"
     CDS             2492..2710
                     /locus_tag="OQQ72_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310310.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013420.1"
                     /translation="MQKREPVIIAPDYTDDELYEWMHQKINAAQDLKWANEARAKQAE
                     NLSALEQDITNLEKAAALSIARMITYPR"
     gene            3279..3467
                     /locus_tag="OQQ72_003862"
     CDS             3279..3467
                     /locus_tag="OQQ72_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000854559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibition protein DicB"
                     /protein_id="HCS2013421.1"
                     /translation="METLLPNVNTSEGCFEIGVNISNPVFTEDAINKRKHERELLNKI
                     CILSMLARLRPIQKGCWQ"
     gene            3464..3655
                     /locus_tag="OQQ72_003863"
     CDS             3464..3655
                     /locus_tag="OQQ72_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1482 family protein"
                     /protein_id="HCS2013422.1"
                     /translation="MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGN
                     CYPVDKVIHQDNNEIPAGL"
     gene            3748..>5864
                     /locus_tag="OQQ72_003864"
     CDS             3748..>5864
                     /locus_tag="OQQ72_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS2013423.1"
                     /translation="MSKVFICAAIPDEQAIKEEGAVAVATAIEAGDERRARAKFHWQF
                     LEHYPAAQDCAYKFLVCEDKPGIPRPALDSWDAEYMQENRWDEESASFVPVETESDPM
                     NVTFDKLAPEVQNAVMVKFDTCENITVDMVISAQELLQEDMATFDGHIVEALMKMPEV
                     NAMYPELKLHAIGWVKHKCKPGAKWPEIQAEMRIWKKRREGERKETGKYTSVVDLARA
                     RTNQQHSENSTGKISPVIAAIHREYKQTWKTLDDELAYALWPGDVDAGNIDGSIHRWA
                     KNEVIDNDREDWKRISASMRKQPDALRYDRQTIFGLVRERPIDIHKDPVALNKYITEY
                     LTTKGVFEDEGRNQSATDTLSSPVPETDAVETAIPGNEKTECKVEVEPSVEREGPFYF
                     LFTDKDGEKYGRANKLSGLEKALALGATEITKEEYFARKNGTYSGSQQNTGASDTTAQ
                     PEPVKVTADEVNKIMQAANISQPDADKLLAASRGEFVAGISDPNDPKWVKGIETRDSV
                     NQNQQESEQNDQKAEQNSPNTQQNEPETKQPEPVAQQEPEKVCTACGQSGGGNCPDCG
                     AVMGDATYQETFDEENQVEVQENDPKEMEGAEHPHKENAGSAQDHASDSETGETADPL
                     ITMNGHHVITSTSRTCDHLMIDLETMGKNPDAPIISIGAIFFDPQTGDMGPEFSKTID
                     LETAGGVIDRDVIKRWLKQSREA"
BASE COUNT         1662 a         1429 c         1379 g         1394 t
ORIGIN      
        1 gcggttcatg tggcttctgc catccagcat ccgcattgtg cgcacatcat tggcccagac
       61 agtccagtta ggctcttttg gtcgcatgat ctcgccatca tcactggcgg cctgttcgta
      121 gagacccacg atccgccccc atatccactg cgcacacgcc agatcctcct ggctacccca
      181 ctggcgtttt ttcgcactaa acacaactgc gccagggtgc cggattaaaa aatcctgttc
      241 agccgtctgc gggtccggtt gcgaagcttc cggacgaaaa gtgtttttat tctctgtagt
      301 aatctctgtt gtattctctg taggatcatc gggccatttt gacccgatga cattgggtcg
      361 ttttgaacca atggagcgtt tcattttgac ctcttccatc gtgtcatttt gacctgatgg
      421 agcggcgcat tttgaaccga tggattcgct caatttgcca tcatctaaaa gctcgctccc
      481 atagttaatc gtgtagaaat tggtcatatc gcgctttgat ttattgagct tttcacaacg
      541 caagagcccc agcgttttca gacttgcaaa cgcgcgcttt aacgttgact ctgaccagaa
      601 tgggaactgt tccagccatt gttccgttgt gttgtaaatc cagcgaacac catcacattc
      661 catgccggaa ttggtatctc tcaaccagta atgcaactgc tgcaacacaa tggcttcatt
      721 taagccaatc ttcatcgcaa gctgtgtgtt tataaccagt gggcgttcag caaaaagaag
      781 gctcataatt ccatccagct ttttgttggt attgctgtcg atacgcaagt ttgaaagcaa
      841 ttgctttttc tataagttcg tcagtttcac gatccactac ggcaggatca gcaaaaagca
      901 gtccggactc caccacatcg ccatattctt tgtttaaccc ggcgatcatg tacgtgatgc
      961 tttttccgtc actaatttca cgatacaacc tgaaatcatt aatccggata gcctccataa
     1021 ttgcaggcac tagcgccgtg aacttttcac gcttatccct ggtgtcgata gccttccagc
     1081 gttcgaatat cttcactcga ttaacgccaa gcgctcgctg atcaaccgcg ccaccttcat
     1141 ctgtgacacg ctgaacatcg atgttcgggc gctctttcaa agcccagaat gcttcagtga
     1201 ttaatatcgt cgcctgctcc tgtgtcattc ctggtcgaca tatccaggca tccagagcct
     1261 cacgagcctg ttcaggagtg attttcattg ttcaaccgcc ccgcccgctt cgtcttacga
     1321 tattcgtcat aaaccttggg atcatacaga agctcgccgc cagatgcctc ctgtagacgc
     1381 atcgcgcgac cttcaggaac tagctcttgc cattgagaaa cagcagatgg gtcaacgcca
     1441 gcagctttcg ctactttggc tttcgtaccg taaaaattaa ttacgtctga tttaaacatc
     1501 gcacctccaa tattgagttt tctcaatgct aatcactcaa ggaatctcaa gtcaaggatt
     1561 attaagatat ctaaatatga acgagaaaac tttaggtcaa cgcattagag aaagacgtaa
     1621 gcaggtaggc ttaagtcaaa acggtttaag caaagctgct ggcgtatctg gctcatcaat
     1681 ttcattatgg gaaagtgacc atacagcccc gcgcgggcaa aatttgcatc gcctcgccga
     1741 ggtattgcaa tgttcaccaa cctggatact gtttggcgac gaggacaaaa caccagctcc
     1801 ccctgtttca ctcgatagta ccctagactt atcggaagat gagttagaga tgctgcgttt
     1861 gtatcgcgca cttcctaaat cagagcaaca agcacaactc agcgaactcc gcgcccgcgt
     1921 tgagaatttt aatcgcctgt tcaccgagct attagaggct cgcaaacgca acaagcatca
     1981 ataatcatcc cttcacaaaa ttttaaagcc ttacatttca atgtattggc tttatcttgc
     2041 gccagcactt gagttttctc atcaaaaaac cttgacgaaa aataatgaga aaactaaatt
     2101 acctccatca acacaccgca cggtgttctc cgcaaacagt tccgctaccc cggcgttaag
     2161 gggaaatgag gtcagcatgg atactatcga tcttggcaac aacgaatctc tggtgtacgg
     2221 cgtgtttcca aaccaggacg gcacgttcac cgcaatgacg tataccaaaa gcaaaacgtt
     2281 taaaaccgaa aatggtgccc gtcgctggct ggaaagaaac tcaggtgagt gatatggatt
     2341 tcgacacaat catggaaaag gcttacgaag aatacttcga aggccttgcc gaaggcgaag
     2401 aagctctcag cttcagtgag tttaaacagg cgctttccag ctcggcaaaa tctaacggct
     2461 gataagcgaa gcagcaccgc gaggaatcag tatgcagaaa cgagaacccg tcatcatcgc
     2521 gccagactat accgatgatg aactttatga gtggatgcac cagaaaatta atgcagcgca
     2581 ggatctgaaa tgggccaatg aagccagggc taagcaggct gaaaatctgt ccgctctgga
     2641 gcaggatatc actaatctgg aaaaagcagc ggcattaagc attgccagaa tgattacata
     2701 cccgcgttaa tagctaacca acgaagctaa ggttggtaat taaggagttc tccacgggtg
     2761 aggtggagtg cgtgcgccgg acacgggtga gcatccggca ctgacagttt actgaaagga
     2821 tatttccctg aaaagtcaga ccataacgcg aaagcgcacg gcgaggtagc tggttcatag
     2881 atagcctgtc gttaaatttt cgtcgaccgt gcgcttccgg ttgtggcaat ccgcgaaatg
     2941 gcgcggcggt aagtatggcg gggttattcc ttccaccgtt gaggacaccg ggttgtcagg
     3001 ttgaccatac gcttaagtga caaccccgct gcaacgccct ctgttatcaa ttttctggtg
     3061 acgtttggcg gtatcagttt tactccgtga ctgctctgcc gcccttttta aagtgaattt
     3121 tgtgatgtgg tgaatgcggc tgagcgcacg cggaacagtt aaaaccaaaa acagtgttat
     3181 gggtggattc tctgtatccg gcgttaattg ttaactggtt aacgtcacct ggaggcacca
     3241 ggcaccgcat cacaaaattc attgttgagg acgcgataat ggaaacgtta ttaccaaacg
     3301 ttaatacgtc tgaaggttgt tttgaaattg gtgtcaatat cagtaaccct gtatttactg
     3361 aagatgccat taacaagaga aaacacgaac gggagctatt aaataaaata tgcattcttt
     3421 caatgctggc ccgtttacgt ccgatacaaa aaggatgctg gcaatgaata cagcatttgc
     3481 acttgttctg acagtttttc ttgtttccgg agagccagtt gatattgcag tcagtgttca
     3541 caggacaatg caggagtgtg tgactgcagc aaccgaacag aaaattcccg gtaactgtta
     3601 cccggtcgat aaagttattc accaggataa taacgaaatc ccggcaggtc tttaaaacag
     3661 ttccgtaata aatatccggt ttcattctta tatgccagca atggcaggga tttgttcacc
     3721 cttaaatctg taatgaggta aaacaaaatg agtaaagtct ttatttgcgc cgccattccg
     3781 gacgaacagg caataaagga agaaggtgcc gtcgctgtag ccacagccat tgaagccggt
     3841 gatgaacgtc gcgcccgcgc aaaatttcac tggcaattcc tggagcatta tccggctgct
     3901 caggactgcg cttataaatt tcttgtctgc gaggataaac ccggtatacc ccgccctgcc
     3961 ctcgattcct gggatgctga atatatgcag gaaaaccgct gggatgagga gtctgcttcc
     4021 tttgtcccgg ttgagactga atccgatccg atgaacgtca cttttgacaa gctggcccct
     4081 gaagtacaga acgctgtcat ggttaagttc gacacatgtg aaaacatcac cgttgatatg
     4141 gttattagcg cacaggaatt gttgcaggaa gacatggcaa cattcgacgg acatatcgtt
     4201 gaagcgttga tgaaaatgcc agaagttaac gccatgtatc cggagcttaa gctgcatgcc
     4261 atcgggtggg ttaagcataa atgtaagcct ggtgccaaat ggcccgaaat tcaggcagag
     4321 atgcgcatct ggaaaaaacg tcgcgaaggt gaacgcaagg aaaccggaaa atacacgtct
     4381 gttgttgatc tcgcccgcgc cagaaccaat caacagcaca gtgaaaattc aacaggaaaa
     4441 atcagcccgg tcattgctgc cattcatcgc gaatacaagc agacatggaa aacactggat
     4501 gacgaactgg cctacgctct ctggcctggt gatgtggatg ccggaaacat tgacggcagc
     4561 atccatcgct gggcaaaaaa tgaagttatc gacaacgacc gcgaagactg gaagcgtatc
     4621 tcggcatcaa tgcgcaaaca gcctgatgcc cttcgctacg accgccagac tatttttggc
     4681 cttgtccgtg aacgtccgat cgacattcac aaagaccctg tggcactgaa caaatacatt
     4741 actgaatacc tgactacaaa gggcgtgttt gaagatgaag gaagaaatca gagcgcaact
     4801 gatactctct cgtcgccagt accagaaact gatgcagtgg aaacggcaat tccgggcaac
     4861 gaaaaaaccg aatgcaaagt ggaagtcgaa ccatctgtag agcgtgaggg gccgttctac
     4921 ttcctcttca ccgacaagga tggcgaaaaa tacggtcgcg caaacaaact ttctggtctg
     4981 gaaaaagcac tagccttggg agctacggaa atcacaaaag aggaatactt cgcacgtaaa
     5041 aacggcacgt actcaggttc acaacaaaat actggtgcat ctgacacgac cgcacaacca
     5101 gagccggtaa aagttaccgc tgacgaagta aacaaaatta tgcaggcagc caatatcagc
     5161 cagcctgacg ccgataagtt gcttgctgcc tctcgcggag aatttgttgc agggattagc
     5221 gacccgaatg atccgaaatg ggtaaagggg attgaaaccc gcgattctgt aaaccagaac
     5281 cagcaagaat cggaacagaa cgaccagaaa gcggaacaaa acagcccaaa tacgcaacaa
     5341 aacgagccag aaacgaaaca acctgagcca gtagcgcaac aggaaccgga aaaagtctgc
     5401 accgcctgcg gtcaaagcgg tggcggcaac tgccctgatt gtggcgcggt gatgggtgac
     5461 gcaacatacc aggaaacatt cgatgaagag aatcaggttg aagttcagga aaatgatccg
     5521 aaggaaatgg aaggcgctga acatccacac aaggagaatg ctggtagcgc tcaggatcac
     5581 gccagcgata gtgaaactgg cgagacggca gatcccttaa ttacgatgaa cggtcatcac
     5641 gttatcacat ccaccagcag gacgtgtgac catctaatga tcgaccttga aaccatggga
     5701 aaaaatcctg atgccccgat tatctcaata ggtgcaatat ttttcgatcc gcaaaccgga
     5761 gatatgggac cggaatttag taagactatc gatctggaaa ctgctggcgg agtcattgat
     5821 cgtgacgtca ttaaaaggtg gctgaagcaa tcacgtgaag cgca
//
LOCUS       DAJVUY010000211         5782 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.212, whole genome shotgun sequence.
ACCESSION   DAJVUY010000211 DAJVUY010000000
VERSION     DAJVUY010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5782
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.212"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(125..2044)
                     /gene="dhaR"
                     /locus_tag="OQQ72_003865"
     CDS             complement(125..2044)
                     /gene="dhaR"
                     /locus_tag="OQQ72_003865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415719.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase operon
                     transcriptional regulator DhaR"
                     /protein_id="HCS2013424.1"
                     /translation="MSGAFNNDGRGISPLIATSWERCNKLMKRETWSVPHQAQGVTFA
                     SIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF
                     HDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRLTGT
                     IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVIS
                     WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE
                     SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT
                     RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL
                     AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA
                     RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN
                     KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE
                     HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK
                     MKQHGIDAGQFKRRV"
     gene            2272..3381
                     /gene="dhaK"
                     /locus_tag="OQQ72_003866"
     CDS             2272..3381
                     /gene="dhaK"
                     /locus_tag="OQQ72_003866"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HCS2013425.1"
                     /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG
                     KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI
                     IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV
                     GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH
                     GEPGIDRRSFSSLDQTVDEMFDTLLGNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD
                     RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK
                     VDDETLALWDAPVHTPALNWDKLGESNVTEQNSNC"
     gene            3353..3985
                     /gene="dhaL"
                     /locus_tag="OQQ72_003867"
     CDS             3353..3985
                     /gene="dhaL"
                     /locus_tag="OQQ72_003867"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HCS2013426.1"
                     /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR
                     GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT
                     LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS
                     IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE"
     gene            3996..5414
                     /gene="dhaM"
                     /locus_tag="OQQ72_003868"
     CDS             3996..5414
                     /gene="dhaM"
                     /locus_tag="OQQ72_003868"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaM"
                     /protein_id="HCS2013427.1"
                     /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP
                     IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPKIAAKVRLCAAPLVE
                     GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV
                     VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI
                     AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLYTVQAKSTL
                     TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDYIAAIFSGHHTLLDDPELLAAASEL
                     LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ
                     FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL
                     YAIQPEETLTLDVKTQRFNRQG"
BASE COUNT         1453 a         1473 c         1427 g         1429 t
ORIGIN      
        1 cggaggatat cgcttcagct tttaagtgcg tgatagacaa gcccttaaac gatgctgaaa
       61 aatgttagcg tgcgccggaa tgaaatatag atcactctga tgtattagaa atcgtttctg
      121 tctttcatac ccggcgctta aactgccctg catcaatgcc atgttgcttc attttccgcc
      181 acagcgtagt gcggccgatt ccaagtaaag ccgacatttc ctgaatgcga ccgcctgtga
      241 cctgggctgc gttaataatt gcctcttttt caacttccgc aaatgacaga ctggtggaaa
      301 ggcgggtggc gctgacatca tctgttgcct gctcggtaaa cagatgttcc ggcaaatcac
      361 tgacgcgaat gcgcccatta tcactactca gagcaagatt ctcgatgacg ctgtaaagtt
      421 caaaatcgtt gcctggccat gcacaagaaa ccaggcgagc gagggcatcg tcatcaattt
      481 tcagccgcgt agagaagcgt ttttcaagac tgcgtaattt gttattcacc agcgccggaa
      541 tgctgccacg ccgcatacgc agaggcggga tggtaatttc aaatgcatgc agcgcgtaat
      601 acagctggcg actaaaacga ttttgttcca ccagcattgc gaggtccgcg gtcgttgttg
      661 caatcacttt gacatcaatt ggtattaaac gccgcgcatc cagtcgcgtg ataacaccct
      721 gcttgataac ctgaagcaaa gcagactgta actccaccgc cagatattca atcttttcaa
      781 gaaacagcgt gccgccgtgc gccagttcca gccgactcag acggccattt tcattgtccg
      841 tacgatcgcc accaataaat tcttccgcca gtgccgcatc accatataac tcacaattga
      901 cggcgatata aggacctgca gcacgctcgc tttcattatg aattgcctga cttagcagtg
      961 ccttgcccac gccctcttct ccacaaagca ggacaggaaa gctactgcgc gccgcctggc
     1021 gaccaaaatg aatcaagcgg cgggtttgcg gatcgtcctg tggcatatga gcaaaggtat
     1081 ggctgacttt tcctaattga ctggtcatca actgccgcat ctgttccaca ggatggagca
     1141 acaaaataaa gctggttccc tgcgtttcta ttatcggttt aagggttatc accgcatcaa
     1201 taaactgatg ctgactttca aaggttgctt ctacgtgttt gagcggatgt gcctgtttta
     1261 ttgcttgttg caatacggcg ggtaacgtta agagttcagt gattgcccgt ccctgacttg
     1321 ccgtcgcgtc aaggcgcaag acccgcgccg cctgggcatt gataaattgc aaattaccct
     1381 gctcgtccca gctaatcacg ccatcatcca tactttctaa cagggcatta agttgattta
     1441 aatgacggtt agtttcagcg agcaaactgt ccgtcagcag taaatttccg acctcgcggg
     1501 cgattgccaa cgtcaacggc aaatcagctg cggtagtttg ctcaaccgga cacgccagcg
     1561 ctattgttcc cgtcaatcgg cccttgctgt caaacaacgg cgttgcacaa aaggcccagt
     1621 tccagagtgc ctgtttgaaa tgttgatcgg ccatcgtttt cacggcctga ccagagatag
     1681 ccgctaacga tagcgcacaa gtaccaataa ttccctcggc gcaatacgtg ccgtcatgga
     1741 atccaagtgc acttagctgc tgcaaggttt gcggatcgcc attacggctg agaatgcagg
     1801 cggtttcatc gaggataaac agcgcacact ctcgcggtgc catatattcc caggcatctt
     1861 ccagcgcagc ctgcccgagc gtcagcatcg ctttcttacg ccgataaata gaagcaaatg
     1921 tcacgccctg ggcctgatgt ggtacgctcc atgtctcccg tttcatcagc ttattgcatc
     1981 gctcccagga ggttgcaatt aagggagata tgccccgacc atcgttgtta aaagcgccac
     2041 tcatatcccg catcccttat gacaaaaggt gttccggctc gcaattttaa gtattagtac
     2101 acgtaaaagt ttcaatatgg aacattcatt aaagcatatg tttcactatg aaacataatt
     2161 tgggctaatt ttcttttccc ttgcctgatg cacaatggat tcatcggcag tcagtggtcg
     2221 ccgtgtcgtt gaacatcatc catgccctac cgtaattgct ggagcaaaat aatgaaaaaa
     2281 ttgatcaatg atgtgcaaga cgtactggac gaacaactgg caggactggc gaaagcgcat
     2341 ccatcgctga cattgcatca ggatccggtg tatgtcaccc gagctgatgc ccctgttgca
     2401 ggaaaagtcg ccctgctgtc gggtggcggc agcggacacg agccgatgca ctgtgggtat
     2461 atcggtcagg ggatgctttc gggggcctgt ccgggcgaaa ttttcacctc accgacgccc
     2521 gataaaatct ttgaatgcgc catgcaagtt gatggcggcg aaggtgtact gttgattatc
     2581 aaaaattaca ccggcgatat tcttaacttt gaaacagcga ccgagttact gcacgatagc
     2641 ggcgtaaaag tgaccactgt ggtcattgat gacgacgttg cggtaaaaga cagtctttat
     2701 actgccgggc gacgcggcgt tgccaacacc gtattaattg aaaaactcgt aggcgcagcg
     2761 gcggagcgtg gcgactcact ggacgcctgt gcggaactgg ggcgtaagtt gaataatcaa
     2821 ggccactcaa taggtatcgc tctcggtgcc tgtaccgttc ctgccgcggg caaaccttct
     2881 tttaccctgg cggataatga gatggagttt ggcgtcggca ttcatggtga gccgggtatt
     2941 gaccgccgct ccttctcttc ccttgatcaa accgtcgatg aaatgttcga caccctgctg
     3001 ggaaatggct cataccatcg cactttacgt ttctgggatt atcaacaagg cagttggcag
     3061 gaagaacaac aaaccaaaca accgctccag tctggcgatc gggtgattgc gctggttaac
     3121 aatcttggcg caactccgct ttctgagctg tacggcgtct ataaccgcct gaccacacgt
     3181 tgccagcaag cgggattgac tatcgaacgt aatttaattg gcgcgtactg tacctcactg
     3241 gatatgaccg gtttctcaat caccttactg aaagttgatg acgaaacgct ggcactctgg
     3301 gacgccccgg tccacacccc ggcccttaac tgggataaat taggagaaag caatgtcact
     3361 gagcagaact caaattgtta actggctcac tcgttgtggc gatattttca gcaccgagag
     3421 cgagtatctt accggactgg atcgcgaaat tggcgacgct gaccacgggc taaatatgaa
     3481 ccgaggcttt agcaaagtgg tggaaaaact ccctgctatc gcagataaag atatcggttt
     3541 cattctcaag aataccggta tgacgctgct ttccagcgtc ggtggtgcca gtggtccgct
     3601 gttcggtacc ttctttatcc gcgccgcaca ggcgacccag gcacggcaaa gcctgacact
     3661 ggaagagctt tatcagatgt tccgcgatgg cgcggacggc gtaatcagtc gcgggaaagc
     3721 cgaacctggc gataaaacca tgtgtgatgt gtgggtgccg gtggtggaat cgttacgtca
     3781 gtccagcgag caaaatctct ctgttccggt ggcgctcgaa gctgccagta gcatcgccga
     3841 atccgctgca caaagtacga ttacgatgca agcccgcaaa ggccgcgcca gttatctcgg
     3901 tgaacgcagt attggtcacc aggatcccgg cgcgacctcg gtgatgttta tgatgcaaat
     3961 gttggcgtta gccgcaaaag agtaaggaat tggtgatggt aaacctggtc atagtttcac
     4021 atagcagccg actgggagaa ggtgtcggtg aattagcccg tcagatgtta atgagtgata
     4081 gttgtaaaat cgccattgcc gcgggaattg acgatccaca aaatcctatt ggtaccgatg
     4141 ccgtcaaagt gatggaggcc atcgaatctg ttgctgatgc cgaccatgtg ctggtcatga
     4201 tggatatggg tagcgcatta ttgagtgctg aaactgcgct ggaattgctg gctcccaaga
     4261 tcgccgcaaa agtacgtttg tgtgctgcgc cgttggtcga aggtacactg gcagcaacgg
     4321 tcagcgcggc ctcgggagcg gatatcgaca aagttatctt tgacgctatg catgcgctgg
     4381 aagccaaacg tgaacaactg ggtttaccgt cctccgacac tgaaatctct gacacatgtc
     4441 ctgcgtacga tgaagaagcc cgttctctgg cggtggtcat aaaaaaccgt aacggcctgc
     4501 atgtacgtcc ggcctcccgg ctggtttata ccttatcgac atttaatgcc gatatgttgc
     4561 tggaaaaaaa cggcaaatgc gtcacaccag agagtattaa ccagattgcg ttactacaag
     4621 ttcgctataa cgatacgctg cgcctgattg cgaaagggcc agaagctgaa gaggcactga
     4681 tcgctttccg tcagctggct gaagataact ttggtgaaac ggaggaagtc gctccaccta
     4741 ctctgcgtcc cgttccgcct gtttcgggta aagcctttta ttatcaacca gttttatata
     4801 cggtacaggc aaaatcaacc ctgaccgtgg aagaagaaca agatcgatta cgccaggcta
     4861 ttgacttcac gttattagat ctgatgacgt taacagcgaa agcagaagcc agcgggcttg
     4921 actatattgc cgcaatcttt tctggtcacc atacactgtt agatgatccg gaactgctgg
     4981 cggcggcaag cgaactcctt cagcatgaac attgcacggc agaatatgcc tggcagcaag
     5041 ttcttaaaga acttagccag caataccagc aactggatga tgaatatcta caagctcgct
     5101 atattgatgt ggacgatctt ctgcatcgca ccctggtcca cctgacccaa acgaaagaag
     5161 aactcccgca gtttaactcg ccaactattc tactggcgga gaacatttat ccttccacag
     5221 tactgcaact ggatccggcg gttgtaaaag gtatctgcct tagcgccgga agtccggtat
     5281 cccacagcgc cctaatcgcc cgtgaactgg ggattggctg gatttgccag cagggtgaga
     5341 aactgtatgc gatacaacca gaagaaacgc taacgctgga cgttaaaacg caacgtttca
     5401 accgtcaggg ttaagccact gttcggatgg catcgttctg atgtcatccg gcaatttact
     5461 cagcactaat ggtttttaac tacctgttat atttttcacc aatttatgat gatttttctt
     5521 cgctaatcac gaacccaacg ccgctggctg gctaataaac agacgttatt tgatcactct
     5581 atttcgccgt tatttatccc tttaattccc ttttctaaaa tgcctgacag ttcgcagaat
     5641 gagatttcga tcatgcagct agtgcgatcc tgaactaagg ttttctgata cttgaatacc
     5701 gttttattcg gtttcgccaa aggagaatga ttgatgaaat cccccgcacc ttctcgcccg
     5761 caaaaaatgg cgttaattcc ag
//
LOCUS       DAJVUY010000212         5754 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.213, whole genome shotgun sequence.
ACCESSION   DAJVUY010000212 DAJVUY010000000
VERSION     DAJVUY010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5754
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.213"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(623..2332)
                     /locus_tag="OQQ72_003869"
     CDS             complement(623..2332)
                     /locus_tag="OQQ72_003869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HCS2013428.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2764..3483)
                     /locus_tag="OQQ72_003870"
     CDS             complement(2764..3483)
                     /locus_tag="OQQ72_003870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HCS2013429.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
     gene            complement(3608..4171)
                     /locus_tag="OQQ72_003871"
                     /pseudo
     CDS             complement(3608..4171)
                     /locus_tag="OQQ72_003871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            4155..4413
                     /locus_tag="OQQ72_003872"
                     /pseudo
     CDS             4155..4413
                     /locus_tag="OQQ72_003872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(4522..5100)
                     /locus_tag="OQQ72_003873"
     CDS             complement(4522..5100)
                     /locus_tag="OQQ72_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013430.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(5521..5754)
                     /locus_tag="OQQ72_003874"
                     /pseudo
     CDS             complement(5521..5754)
                     /locus_tag="OQQ72_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT         1606 a         1252 c         1040 g         1856 t
ORIGIN      
        1 aagcttgata caactggtct ggtatataca gtttctttga gtgcggttac gtccacagag
       61 gtaacggtaa aagtaacccc ttgtcgggac cactccgacc gcgcacagag gcattttcat
      121 cgctgacagg ccgcattgcc tcgcagggct ggaggaggat cggtgatatc cggacgaccg
      181 taccggctta cgccgggctt cggcggtttt actcctctgc catgtgcaac aacggagtgc
      241 cgccttacat gccgctggcg cggcatatcc tggtaacatt tttgttgata ccaccttccg
      301 gccttatcct gaccagtggg ctttcctggc atcgatgata ccgatgaacg cgcatgatat
      361 tgagccgacg atattacggg caactggaaa tactcaccct ctggatgtga cctttatcca
      421 tgaagaagat ttggccatac catggaaacc tgaacaatca tcagtttacg cccatgtaaa
      481 cccctacggg atatttgaac tcgatatgga aacaaggttg ccaatcgagg tggttgcctg
      541 aaagttggca gttacccggt cactacacct tgttggagtg aacatatcaa aaacaggtag
      601 ttacacaatt taaattacag tctcataaaa aatgattaaa tctatttatt atttcaataa
      661 acgttttttt catcttcttt gaaaattgtt ctgctatagt atccggttcc agattgttct
      721 cttttattat tctacaatac tctaatattg tttctttgtc tctatttact acagatacaa
      781 atacaccagg aataccatct ttattagttg cggacagcat ttcgaccaat cgtcttgtgg
      841 taaaactata gttttttaga atattacaaa aggcacgtat tgtttcggta tggccattat
      901 aaaatgccat aaaaagtcct gatgtaccgt tgggattttt tatccataat aattcatcta
      961 tatattcctg gtgagggggg agtattttta gtatatctcc atacgccata atggcctttg
     1021 tgtgcccatt ttgaagtgcc ataaacaacc catgctttac tttcaataat tctttaattt
     1081 gttcactact aagcattttc ttattaagca gacttccgaa catacgaata ctatctgcat
     1141 gtccattctg caatgcaaaa aataacccag gtaaatcatg gctgtctttc gcagctaata
     1201 gatataatct cttatcggaa gttaacgggg ttttaaagac tatttcccca taggctttta
     1261 ttgtgtctac atgtccgttc ataaaagaca tgcataaacc cggcacattg tttgccccta
     1321 ccgcagcaag caatgtaagt attgtttctt gactaagatt gcacatattt aatatcttac
     1381 catatacttg aataatgtct gaacatccgt tttgaagtgc tatataaaat gcaggagtac
     1441 catcagagct tctcgtggcc agaaggttca ccagtttaga ttgagaaatt tcaccatttt
     1501 tgtatttttc catcagtata aataatactt ctgtcagatt ctttgttatc gcatgatata
     1561 taactctgga attgatcaat tcatctggta aaagtttcac tgtgtttgtt agaggggaat
     1621 tatgcctatc ttcaaatatt acctgcccgg gttgctccag accataaatt ttccaataaa
     1681 aatcatcaaa aaaatcctta gcggataatt gactcagttc gaaatggcta tcacaagtaa
     1741 atacagtacg tttatgagta acagttcgat taggatcgaa aaactgaaca acccattttt
     1801 cactttcttg tacgcgcttt attttcaacc ctaacgccat ttggtggttt aatgtgcatg
     1861 ctgataatgt tctgacaaag tctccatttt ttttcatgtt ataaaaaaaa ttagtaataa
     1921 ctgttcccca ctttttattt tccacaaaat aaatataagc tggtgatttt gaaaaatctt
     1981 ccgttttttc caaacataca ttttttgcaa tagcatcagg ggtgctaaga agctgatagt
     2041 ttaccttccc atttgtttcc ataaaattca tttcccaata ggaagctagg tgacggcaaa
     2101 ctatttgtct tccatatata tcttttgcca ctccatttat atttaccttc acatttctct
     2161 tttctgaaaa ataaggtgct gttttattct taaactgaat tagttcactg gagtttgaga
     2221 ccctcataat agaacttgtt attgttctat tatctctgtt aacagacata tctgttgata
     2281 acgaattttt tgttgaaaat atactagatg aaaatgtttt atttaacggc atagaagaca
     2341 accatagaga tgttataata ctattagatt gcagttacta atagtaaaag cctccttaca
     2401 aggaggtagc ttattcagaa tgctcctata agatagcgag ctcgtcaacg atacagatga
     2461 tctgattata ttgtgcaaaa ggagaacagg aaaataggca ctggaaaaga tgaaggcctg
     2521 atgggagcat taactaatgc aaaatccgac aggttaatat cccgaaaagc aatcaaacga
     2581 ctcaaacagg agatgcacgc tgaagtggtg gacaactgtt cggatttcag atgagtagct
     2641 cagcagttta tgagccgaat gctctgtcac ggtcaggaat caggctgcat acgctgtgcc
     2701 aaatctaatc gtagttattc taaccagttt tccagctaca aggtggtgta gctggcatct
     2761 tctctactct atcatcaaac gataaaatgg ttcctctcgt aacatttgct cttgcctttc
     2821 acttccatct cgatcgcttc gtagttcatt acgatagctg acatatttcc agtcttcagg
     2881 tctaacatct gacgccggat actccccggg agcgattttg cttcttaata gattagactc
     2941 gagacacatt ataaattgtc gtattttatg aagtaataaa gcactatatt gcgagcattc
     3001 ctgatctgat tttacatata gcgtaaactg agctcctatc cccacacgag attgctgaga
     3061 aactcgattc atatcagtta tcttccattt atctatagga ctgtcctctg aaaataataa
     3121 accagacaaa atttggaatg ccagaggaac ttgctcccta gctatactaa tatgaaactt
     3181 gtccccaaca aaatccccct tactctgagg attttcacga catgcatgaa taaacacatc
     3241 tccactatgg ttcacaatct ggaatccttg gtacatgaca gaaaaaaatt gacatatatc
     3301 agagtaagtt ggcacgttcg atgctacttt gaaatagtac gctgggtatt gccgtatttg
     3361 gttgtacaat atattgaagt tatttttcaa tctttcattc gcagaaagca tctgcggtat
     3421 ttcagacctc acaacattca aagaatctaa atttagtttt agacagggct tttttatggg
     3481 catagaaaac gtcctctata aaatagatat attatcttat attgattgtt tatcatcttt
     3541 tataaaacga tacattatat gtaatgtatg taagcgtaag ggtcttctcc gatcatggtg
     3601 ggaaggctta gaacgccata ttcagtttcc catagtggaa catcactccc agcttaaagc
     3661 gctcccggtt gcggtagccc ttggctttta ttctcagcag cctgatcttg ctgttcagtg
     3721 cttccgcatt tccgtttgat acgccatggc gcatggcgtt caggataccg tacaaccttt
     3781 tccctatcgt tttagccaca ttcttcatca tggggacgtc actgttggcc gccagcgaca
     3841 gccatctctg ccagtcgttg cgtctttcct cgctccatgg tctgctccag atatcctttg
     3901 ccagttcttt cagcgcccag cacaggctcg tcagcttcat ctgcgcacgc agccatatca
     3961 gcttttcctg cctggattcg gtcatccatt tatcgctgtg ctgccacagg aagcgagttc
     4021 cctttgcctg acgacgactt tcaacaggaa gatgcggatg ttcattctgg cgggttttat
     4081 ccaccacctc acccggttgt ttcgccacat gaaagcgatc gaaggctatt ttctcaaccg
     4141 cattgggtaa gtggatgcgc gctgctctta gtttgctgag ccagtttagc attgccttct
     4201 acatgaccga tgcctgagcc ggtataccga actttattgt cctcaaccag tcatgttata
     4261 agcaagaaat gcactcagcg gatagagcga cataatctga acctgcggac acatcttaag
     4321 cggcttaccc gcaaaaccat atgcttctca aagtctgatg atatgcacta taagatcatc
     4381 ggctggtatc tgacaatcaa ccaccaccac taaatctgcg tcacgacctg caactgagtc
     4441 tggttgaaca ggctgaggcc ctgctgaagc aacgcgaacc tctcgactct tgttggattt
     4501 taccaaatag tttttctaaa attaaacaca tttatataag ttctttgctg aacaaaacgc
     4561 agcccgccat cctttttcat tcataaattc agcaatggca gataaaactt tttcatcaag
     4621 catataaaaa ataatgcaag tagactcaat atgcctcata caaataaggc cgcacatatc
     4681 cgtaatatat ttgtcaatgc tgctataatt tgcatggtaa tatgccatgc tattatctga
     4741 tgattttaca tatgcagtat gacatatttt tccttcacga ttaacaaaac tgacaaaacc
     4801 actttcacca ggagtaatat ataaagatga atttaacgtg cgctcactaa tattcattaa
     4861 ttgttgaaat tcaatggaat agttttcagt taatgtatct attatcttgg ctttgtcttt
     4921 ctttgttatc tcattgtctt tttcggcaag aaaaattgcc actttatgac atgcattcag
     4981 ctcgttaatt ttacctgata aaactgcttt tcttaccaca tcgttgaact catcgatagt
     5041 gtgtttttta ttatatatat catgaaaaat atagcctaaa gacttaaacg agactttcat
     5101 tttatattct ccttaaatat taacaggata tatatatcac attttcctct atattttcag
     5161 aaaccagcta tcattttccc cattactggt acgtcgcttc agatatttcc gcagcaagcg
     5221 ataaccctgc gcactatgag gatgccattc attataatgt ttgaacacct tcgcgagact
     5281 actttactgc tgttaacacg tcaggttcga acataacact gatttaatca tatttcatcg
     5341 ttttgacgaa gttttctgcc attccatttt gcaccgccgt gtgtttgggg gcaaggccga
     5401 ccatctgtgt ttcattcgcc agatataagt gatgagatgg cattctccct ccttcacggc
     5461 agaagcattt tgaccgttta ggggatgcgg acgattttca tgcctgctaa gatactttcg
     5521 ttactgatgc tgtccgtttt ccaccatttc atcatcactg attggcgttg tgtttttggt
     5581 cagcactcca gctttacgtt tctcttttaa ccggtaactc tctcctttga tattcagcgt
     5641 gtagcagccg atctaggatc gctgttgcca gcacgtgatc tccgaacatt tctccccagt
     5701 ctgcgacccc tttgtttgac gtcagtatga tgctcgcttt ttcatatcga cagt
//
LOCUS       DAJVUY010000213         5645 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.214, whole genome shotgun sequence.
ACCESSION   DAJVUY010000213 DAJVUY010000000
VERSION     DAJVUY010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5645
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.214"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..856
                     /gene="pdeC"
                     /locus_tag="OQQ72_003875"
     CDS             <1..856
                     /gene="pdeC"
                     /locus_tag="OQQ72_003875"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS2013431.1"
                     /translation="FALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYY
                     QPIIDIKTEKCIGAEALLRWPSEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDL
                     GDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEK
                     MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIA
                     EHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLP
                     ARELTRGQ"
     gene            complement(859..1182)
                     /gene="soxS"
                     /locus_tag="OQQ72_003876"
     CDS             complement(859..1182)
                     /gene="soxS"
                     /locus_tag="OQQ72_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HCS2013432.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            1268..1732
                     /gene="soxR"
                     /locus_tag="OQQ72_003877"
     CDS             1268..1732
                     /gene="soxR"
                     /locus_tag="OQQ72_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HCS2013433.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYRRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            2278..3627
                     /gene="ghxP"
                     /locus_tag="OQQ72_003878"
                     /gene_synonym="yjcD"
     CDS             2278..3627
                     /gene="ghxP"
                     /locus_tag="OQQ72_003878"
                     /gene_synonym="yjcD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine/hypoxanthine transporter GhxP"
                     /protein_id="HCS2013434.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            3779..5428
                     /locus_tag="OQQ72_003879"
     CDS             3779..5428
                     /locus_tag="OQQ72_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HCS2013435.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
BASE COUNT         1208 a         1340 c         1567 g         1530 t
ORIGIN      
        1 ttttgcgttg cccgccggta ttttggggag tcttgttctg ctattactct ggctacgtat
       61 tcgacaaaac tatttgtctc ccaaacgcaa attgcaacgc gctctagaaa aacatcaact
      121 ttgtctttat taccagccaa taatcgatat caaaacagaa aaatgtatcg gcgctgaagc
      181 gttgttacgt tggcctagtg agcaggagca agtaatgaat ccggcagagt ttattccgct
      241 ggcagaaaag gaggggatga tagaacaggt aactgattat gttattgata atgtcttccg
      301 cgatctgggc gattacctgg caacacatgc agatcgctat gtttctatta acctgtcggc
      361 ctccgatttt catacgtcac ggttgatagc gcgaatcaat cagaaaacag agcaatacgc
      421 ggtgcgtccg cagcaaatta aatttgaagt gactgagcat gcatttcttg atgtcgaaaa
      481 aatgacgccg attattctgg ctttccgcca ggctggttac gaagtggcaa ttgatgattt
      541 tggtattggc tactctaact tgcataacct taaatcattg aatgtcgata ttttgaaaat
      601 cgataaatcg tttgttgaaa cgctgaccac ccacaaaacc agtcatttga ttgcggaaca
      661 catcatcgag ctggcgcaca gcctggggtt aaaaacgatc gctgaaggcg tcgaaactga
      721 ggagcaggtt aactggctgc gcaaacgcgg cgtgcgctat tgccagggat ggttttttgc
      781 gaaggcgatg ccgccgcagg tgtttatgca atggatggag caattacccg cgcgggagtt
      841 aacgcgcggg caataaaact acaggcggtg gcgataatcg ctgggagtgc gatcaaactg
      901 ccgacggaaa acgcgggaga aggtctgctg cgagacataa cccaggtcca ttgcgatatc
      961 aaaaatcgga cgctcggtgg tgcgcaactc aacggcggcc agtaacaggc gacgttggcg
     1021 aatgtaatcg ccaagcgtct gatgcgtcac cgtgcggaac attcgttgca agtaccactt
     1081 tgaatagcct gatttttttg cgactacatc aatgttaagc ggctggtcaa tatgctcgtc
     1141 aatccatgcg ataagatcct gaataatttt ctgatgggac ataaatctgc ctcttttcag
     1201 tgttcagttc gttaattcat ctgttgggga gtataattcc tcaagttaac ttgaggtaaa
     1261 gcgatttatg gaaaagaaat taccccgcat taaagcgctg ctaacccccg gcgaagtggc
     1321 gaaacgcagc ggtgtggcgg tatcggcgct gcatttctat gaaagtaaag ggttgattac
     1381 cagtatccgt aacagcggca atcagcggcg atatagacgt gatgtgttgc gatatgttgc
     1441 aattatcaaa attgctcagc gtattggcat tccgctggcg accattggtg aagcgtttgg
     1501 cgtgttgcca gaagggcata cgttaagtgc gaaagagtgg aaacagcttt cgtcccaatg
     1561 gcgagaagag ttggatcggc gcattcatac cttagtggcg ctgcgtgacg aactggacgg
     1621 atgtattggt tgtggctgcc tttcgcgcag tgattgcccg ttgcgtaacc cgggcgaccg
     1681 cttaggagaa gaaggtaccg gcgcacgctt gctggaagat gaacaaaact aaagcgccac
     1741 aagggcgctt tagtttgttt tccggtcttt gtctttctct ctatcccgct ggtacacagg
     1801 agggtttccc ccgacgtcaa cacacctcat tcgagcacgt ggtggaggtt ccggttggtg
     1861 ttgatgcttt aattgtatgt caccgacgtt tcttcgccag tgtaaaagta tactttttaa
     1921 ccgcaatatt tttgtcatct cagacgattt tttatcgcaa tcctgaacgg tatacggctc
     1981 gataacgctg caatcttgcg caccgacgat aacgtttgcg catcaattgc ctgttttttc
     2041 atcgtcaaga caataaaaga gaaaaaagca gcaaacttcg gttgaaaaag ccgctatgat
     2101 cgccggataa tcgtttgctt tttttaccac ccgttttgta tgcgcggagc taaacgtttg
     2161 cttttttgcg acgcagtaaa ttgtcgcaaa cctggagcag gaagataacg tttcgctggc
     2221 aggggattgt ccgccacgca tcttgacgaa aattaaactc tcaggggatg ttttcttatg
     2281 tctacgccat cagcgcgtac cggcggttca ctcgacgcct ggtttaaaat ttcacaacgt
     2341 ggaagcactg tccgtcagga agtggttgcc gggttaacaa cgtttctggc gatggtctac
     2401 tcggtcatcg tcgttccagg tatgttgggt aaagcaggct tcccgcctgc ggcagttttc
     2461 gttgcaacct gtctggttgc cggactcggt tctatcgtga tgggtctgtg ggctaatctg
     2521 ccgttggcga ttggttgcgc catctccctg acggcgttta ccgcattcag cctggtgctg
     2581 gggcaacata ttagcgtacc tgtcgcgctg ggtgccgtgt tcctgatggg tgtgctgttt
     2641 acggtaattt ctgccacggg tatccgtagc tggattttgc gcaacttgcc gcacggtgtg
     2701 gcgcacggca cggggatcgg tatcggtctg ttcctgctgc tcattgccgc taatggtgtt
     2761 ggtctggtga ttaaaaaccc gcttgatggt ctgcccgttg cgctgggtga tttcgcgacc
     2821 ttcccggtga ttatgtcact ggtaggtctg gcggtgatca tcggcctgga aaaactgaaa
     2881 gtccctggtg gcattctgct gaccattatc ggtatctcaa ttgtcggttt gatcttcgat
     2941 cctaacgtcc atttctccgg cgttttcggc atgccttcat tgagcgatga aaacggcaat
     3001 tcactgattg gcagcctgga cattatgggc gcgctgaatc ctgtagtcct gccaagcgtt
     3061 ctggcgctgg tgatgacggc agtatttgat gccaccggaa ctatccgtgc cgtcgccggc
     3121 caggcgaacc tgctggataa agatgggcag atcatcgacg gtgggaaagc actgaccact
     3181 gactccatga gcagcgtttt ctctggcctg gtgggtgctg ctccggcagc ggtatacatc
     3241 gagtctgcgg cgggtacggc ggcgggcggt aaaaccggtt tgacggctat caccgttggc
     3301 gtgctgttcc tgctgattct gttcctctct ccgctctctt acctcgttcc ggggtatgca
     3361 acggctccgg cgctgatgta cgttggcctg ctgatgctga gcaacgtggc gaaaatcgac
     3421 tttgctgatt ttgttgatgc gatggcgggt ctggttacgg cggtattcat cgtgctgacc
     3481 tgtaacatcg taacaggcat catgatcggc ttcgcgactc tggtgattgg tcgtctggtt
     3541 tccggcgaat ggcgcaagtt gaacatcggt acggtcgtta tcgccgtggc gctggtgacc
     3601 ttctatgcgg gtggctgggc tatctaatct ttcatcggat tctgaaaacg ggtggcaatg
     3661 gctgcccgtt tttattttct ccgcacattg tgtgagcttt tgcgatattc tgaaaaaatg
     3721 agaattcagg cataacgcct ttctcagatc ataaaaaaac atcgcaaaca gggaacgcat
     3781 ggaaatcttc ttcaccatac tgataatgac cctcgtggtc tcgctgtccg gggtggtcac
     3841 tcgtgtcatg ccctttcaga tcccgcttcc gcttatgcaa atcgccatcg gtgcgctact
     3901 ggcgtggccg acgtttggtt tgcatgtgga gtttgatcct gaactctttt tagtcttgtt
     3961 tatcccgccg ttgctgttcg ctgatggctg gaaaacgccg acccgtgaat ttctcgaaca
     4021 tggtcgagag attttcggcc tcgcgctggc gctggtggtg gtcaccgtgg tcggcattgg
     4081 cttccttatt tactgggtgg tgccgggcat tccgctgatc cccgcctttg cgctggcggc
     4141 ggtactttct ccgaccgatg ctgtggcgct ctccggaatt gttggcgaag ggcgcatccc
     4201 gaaaaaaatc atgggcattt tgcagggcga agcgttgatg aatgacgcct ccggcctggt
     4261 gtcgttgaag tttgccgtgg cagtggcgat ggggacgatg atcttcaccg tcggcggtgc
     4321 gacggtcgaa tttatgaaag tagccattgg tggtattctt gccggttttg tggtgagctg
     4381 gctgtatggt cgctcgctgc gattcctcag ccgctggggc ggtgatgaac ccgcgacgca
     4441 gatcgttctg ctgttcttgc tgccattcgc ttcttatctg attgccgaac atattggcgt
     4501 ttccggcatc ctcgctgcgg ttgccgccgg gatgaccatc acccgctccg gtgtgatgcg
     4561 ccgtgcgccg ctggcaatgc gcctgcgcgc aaacagcacc tgggcgatgc tggaatttgt
     4621 ctttaacggc atggtgttcc tgctgttagg tctgcagctg ccgggtattc tggagacgtc
     4681 gctgatggcg gcagaaatcg accctaacgt cgaaatctgg atgctgttta ccgatattat
     4741 tctgatatat gcggcgctga tgctggtccg tttcggctgg ctgtggacga tgaaaaagtt
     4801 cagcaaccgc ttcctgaaga agaagccgat ggagtttggt tcgtggacca cacgagaaat
     4861 cctgatcgcg tctttcgccg gggtgcgtgg ggcgatcact ctggccggtg tgctctctat
     4921 cccgctgctc ttgccggatg gtaacgtctt cccggcgcgc tatgagctgg tgttcctggc
     4981 ggctggcgtc attctcttct cgctgtttgt cggtgtggtg atgttgccta ttctgctaca
     5041 acacattgaa gtcgcggatc attcgcaaca attgaaagag gaacgtattg cgcgagcggc
     5101 aacggcagaa gtggcgattg tggcgatcca gaaaatggag gagcgtctgg cggcggatac
     5161 cgaagagaat atcgataacc agctgcttac ggaggtcagt tctcgcgtca ttggtaacct
     5221 gcgtcgtcgc gccgatggac gtaacgacgt tgaaagttcc gtgcaggaag agaaccttga
     5281 gcgtcgcttc cgtctggcgg cattgcgttc tgaacgtgct gaactgtacc acctgcgcgc
     5341 cacgcgggag atcagcaacg aaacgctgca aaaattactg cacgatctcg atttgcttga
     5401 agcgttgcta attgaggaaa atcagtaagc cgaaagcgac gtaaccaggc ccgaggtaat
     5461 ctgaaaaagg tgcaatcttt tgcaccttta acaggttagc tcgggctaac attcatgatt
     5521 ctaaaacaaa taagttatct ctcttgtaaa gtcaattcat tggctgttct tcgacttaac
     5581 ctcaatctgc gtgttgcata atatctgcag taatcttcat agcgactgca ttaatattat
     5641 cctca
//
LOCUS       DAJVUY010000214         5595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.215, whole genome shotgun sequence.
ACCESSION   DAJVUY010000214 DAJVUY010000000
VERSION     DAJVUY010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.215"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..401)
                     /locus_tag="OQQ72_003880"
     CDS             complement(<1..401)
                     /locus_tag="OQQ72_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000511771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS2013436.1"
                     /translation="MGILEQEMKRLAQQAGGSHKTVHDRIKLVQRFCERLVLAQNVQI
                     RRVEQLKARYIEGYVRERLAQGITKRSLQNEMAAVRCILKQAGRDRLAQSERLNNRSL
                     GLSGASRNGTKRAITPEHYRHVLETARAKDPG"
     gene            960..1106
                     /locus_tag="OQQ72_003881"
     CDS             960..1106
                     /locus_tag="OQQ72_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000285696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013437.1"
                     /translation="MYRIKTLASVAMFCDPVFAEVCTGKRIDRPDNRRFFQVVKRWAL
                     STTA"
     gene            complement(1266..1583)
                     /locus_tag="OQQ72_003882"
     CDS             complement(1266..1583)
                     /locus_tag="OQQ72_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016161430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS2013438.1"
                     /translation="MDRGEIWLVSLDPTTGHEQSGKRPVLIVSKASFNTFTRLPVVVP
                     VTSGGNFAREAGFTVSLDGAGTKTTGVIRCDQPRTIDMGARSGKRLERIPDAVVNEVL
                     ARL"
     gene            complement(1584..1841)
                     /locus_tag="OQQ72_003883"
     CDS             complement(1584..1841)
                     /locus_tag="OQQ72_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000557619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HCS2013439.1"
                     /translation="MYTTRLKKVGGSVMLAVPPAVLKTLGLSTDSEVGMTIDNGCLII
                     EPQKRPRYSLEELLAQCDPHAEISEEGREWIDAPAVGKEIL"
     gene            complement(2190..2396)
                     /locus_tag="OQQ72_003884"
     CDS             complement(2190..2396)
                     /locus_tag="OQQ72_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003842122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013440.1"
                     /translation="MMLQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRW
                     PKGERLIAEALGIKPEQIWPSRYR"
     gene            complement(2393..2854)
                     /locus_tag="OQQ72_003885"
     CDS             complement(2393..2854)
                     /locus_tag="OQQ72_003885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000201268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013441.1"
                     /translation="MATIPTQTHPLLAVPFSAATDFTVLADHCENVAETLIESEDPVL
                     RLALCGRLAACLTLLQPTLNDPIPSHLTDSLTVDALPADMPRFVPDAELLCDYSLTLA
                     QLLIGQGMQPKVEQTITGLLCELVWYFAAEMKAPRWLRTADGVKFIDEVAA"
     gene            complement(3225..4829)
                     /locus_tag="OQQ72_003886"
     CDS             complement(3225..4829)
                     /locus_tag="OQQ72_003886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013442.1"
                     /translation="MITKELVDESNFISQLVDIGRFDESYQQSVAFLNKLERITIRND
                     NYFIVLANIAGALVDIGQMQNNKNASELGCNLMEDNKEAFISVLGECLYYYNYGNALS
                     NLVSITNPNDHTFKSIEELVSLKNIYWRSFKLSAEEQEEFQAELSVNLANSLRSQFRL
                     SESLRYYDLTNLKGLDIPQAWVNRSMSLMVLNLISSSFSIKLLKEVRAGYIKASVSKN
                     IPPQWESFYLERIAQTNEKIAEYAVDDETDEHDEALTQQEFEVLSPYRQFCLRNHLTL
                     SEHGLYCPCVGSATDDLVIASRGGVTGDFIIPMEMVLNRLKSEFSLARHLYFDYLHPQ
                     NTDYIKYESHFLELYNDEVLGIEIEKIRTAFRLCFGILDKIAVAICELYNLYPTTKKG
                     TPQKNIYFQNFWQLDVDNRRQLFEKVKSPGLLALYSIATDLNKDKGGELAFYKEWRNG
                     LEHKFLVVHKSDKPEDIYESYQLIEDILFIKESDFIHHFEHLLQITRSAIFSFAFMVR
                     QEGMKEKKEGIHYMTRELHAINYSAD"
     gene            complement(4842..5207)
                     /locus_tag="OQQ72_003887"
     CDS             complement(4842..5207)
                     /locus_tag="OQQ72_003887"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013443.1"
                     /translation="MVSDKRADIIVSLPQIKIPIEIKRDYHRDVWTALNGQLDKLYTK
                     NPDAAGHGIYLVFWFGSARPNSLPHLAKNTSQPENASAMENMLNETVPVDKRDRLSAI
                     VIDVSCEGIPPVEAPKSSV"
     gene            complement(5235..5444)
                     /locus_tag="OQQ72_003888"
     CDS             complement(5235..5444)
                     /locus_tag="OQQ72_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001044500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013444.1"
                     /translation="MNKTPANIMDLYSLLLDHIRDISNRIANENTDIYKQFWNEDSYG
                     RTLTPKPEESCRNIFLDLLRVRLNP"
BASE COUNT         1447 a         1346 c         1306 g         1496 t
ORIGIN      
        1 cccggatctt ttgcgcgggc ggtttccagc acatggcggt aatgctccgg cgtgatggcc
       61 cgcttcgtac cgttacggga tgcgccagac aggcccagcg agcggttatt cagtcgctca
      121 ctctgcgcca gcctgtcacg cccggcctgt ttcagaatgc agcgcaccgc cgccatctca
      181 ttttgcaggg aacgcttcgt gataccctgc gccagtcgtt cacgaacata tccctcaata
      241 taccgcgcct taagctgctc cacccggcgg atctgcacat tctgtgccag aaccagacgc
      301 tcacaaaacc gctgcaccag cttaatacgg tcgtgaacgg tcttatggct gccgcccgcc
      361 tgttgtgcca atcgcttcat ttcctgctcc agaatcccca tacattcccc ctttcatgat
      421 tgccgcaaac tcatccccaa aaactcaaca ctgatacagc gttccccggc gcacaggccg
      481 atagcccctg agttttgtcg gggctgcgaa cgatacctga gcgccggggc ggcagccgtt
      541 gaggtgtggt ggggcttcgg ttgtgctctc agagcagccg cccgcttgcg cgggtcatcc
      601 cccggatcgt ccagatccgc ctcggtatcg gttcatattc tccttatggg taaatggcct
      661 aaaaaggcgg tgtcagaatc cagccatgag ctggcgcagt tgagttttct ggtgcaggtc
      721 gaaagggctt gcgtgcgtca ctttcccgct ttgcgcggtt aaagtgacgc acggatctgg
      781 tgcagcatct gagatttatc gtctggtgca gttttacggt cacgcggcag caaagcctga
      841 cggcaatgca ggccgcagcc cgtaaggtaa aaggcgctga gggtgtcagc agatgcaggt
      901 tagccgggag aattccggcg cggtgcagat tcagaccagc aggctggcga agtaaaagga
      961 tgtatcgtat taaaactctg gcctccgtcg cgatgttctg cgacccggtg tttgcagagg
     1021 tctgcaccgg taaacggatc gaccgtcctg ataacaggcg cttctttcag gttgtgaagc
     1081 gttgggcgct gtctacgaca gcatagagca agggggagac tacgcctgtg ccgctggcgc
     1141 ggaaaggaga aactgttttt acctgcaaaa ggatttttta atcacttgtt gttataaaaa
     1201 atgagggcgc tgtatgtgac agcgccctcg ttcaggttac ataaaaaata tcagctcaga
     1261 atagcttaca gtcgagccag cacctcattc acgacagcat cgggtatacg ttccagccgc
     1321 ttaccgctcc gagctcccat atcaatggtt ctgggctggt cgcagcgaat aacgcccgtt
     1381 gtttttgttc ccgccccgtc cagtgaaacg gtaaaaccgg cttcgcgggc aaagtttccg
     1441 ccgctggtga cagggacaac aacaggcaac cgggtgaacg tgttaaacga tgccttcgat
     1501 acgatgagta ccggacgttt tccactttgt tcatggccag tggtgggatc cagtgaaacg
     1561 agccagattt ctcctctgtc catctacagg atctccttgc ccaccgcagg cgcatcaatc
     1621 cattcccgac cctcttcgct tatttcagcg tgcggatcgc actgcgccaa cagttcttcg
     1681 agcgaatagc ggggacgttt ttgaggttca ataatcaggc agccattatc aatggtcatg
     1741 cccacttcgc tgtccgtcga cagccctagc gttttcagca ctgcgggggg aaccgccagc
     1801 atgacggatc cgccaacctt tttcaggcga gtggtataca tagagcacct ccggatatta
     1861 tattttaata taacatccat gatagacgat gcacaactat tcatcagatt cattgtggtt
     1921 tccttagtgt aataaagcgt gaagaaagcc ttaatccatc ggaagacaga tccggcagtt
     1981 ttcaaaggcg acattgccgg taaaagggca accgtcctga tacatcaggc gcttctttca
     2041 ggtcatgaag catttcgtac aggcgggagc ttagtgcgta acaaagaagg ccgataatag
     2101 gaaactgctt ttgcagttca aaggattatg acggttcgga taaacaaaat gcggcgcagc
     2161 ttccgtatcc gggctgcgcc gcaggaacat cagcggtagc gcgaaggcca gatttgctca
     2221 ggcttgatgc ctaacgcttc ggcaattaac ctttcgcctt tgggccagcg gcgggtaagc
     2281 gcattagcca gcgtggagga cgccagacct gcctgacgcg aaagcgctga cagcgaagtg
     2341 cctcgttttt tcagcccggc gataatgtcg gcaggatgcc agtcctgcag catcatgcag
     2401 ccacctcgtc gataaacttc acgccatcgg cggtgcggag ccagcgcggg gctttcattt
     2461 cggcggcaaa ataccagacc agttcacata ataagcctgt tatcgtctgc tccacttttg
     2521 gctgcatccc ctgcccgata agaagttgcg ccagcgtcag tgagtaatca caaagtaatt
     2581 ctgcgtcggg gacaaatcgg ggcatatcgg caggtagagc atcaacggtc aggctgtcag
     2641 tcagatgaga cgggatgggg tcgttcagcg tgggttgcag caaagtgaga caggcggcaa
     2701 gtcgcccgca aagcgccagc cgcagcaccg gatcttcgct ttcgatcagg gtttcggcga
     2761 cgttttcgca gtggtctgcc agtacggtaa aatctgtggc agcactgaag ggaacagcaa
     2821 gtaacgggtg tgtctgagtg gggatcgtag ccataaaggc agcctccagt atgtggtttg
     2881 aaaaccacca ccagaggttc caatctcatg ggtggtggac tgaacgaggt tggaactacc
     2941 ggccatactg gaaccggcgc accttacggt gcccccgccc agcccaccat aattttggtg
     3001 tagctaagcg cgcgacataa aaaaagacgc agacgcgtca cgtgtcgcca gtatggttat
     3061 atttcggggt tccaatcccg gcacctgatt ttgcaggtgc gggtaaaaga taccgctttc
     3121 ggttgaaaac ggcaagggga agtcgtggaa tagagatcgc agattgttat aaatatacac
     3181 aatagttaat gttaacaaag acggcacata tattaacttt actctcaatc tgctgaatag
     3241 tttatcgcat gtaattctcg ggtcatatag tggataccct ccttcttttc tttcatcccc
     3301 tcttgcctca ccataaaagc aaacgaaaaa attgctgaac gagttatctg aagtaaatgc
     3361 tcaaaatggt gaataaaatc actttctttg ataaaaagaa tatcttctat tagttgataa
     3421 gattcgtaaa tgtcctcagg tttatcactt ttatgtacaa ctaaaaactt atgctctaaa
     3481 ccattgcgcc attctttata gaaagccaac tccccaccct tatctttatt caggtcggta
     3541 gcaatactgt acagcgccag aagccctggt gattttacct tttcaaataa ttgtcttctg
     3601 ttatcaacat ctaactgcca gaaattctga aaatagatat tcttctgagg tgtacctttt
     3661 tttgttgttg ggtaaagatt ataaagttca catatggcta ccgcaatttt atcaagaata
     3721 ccaaagcaaa gacgaaatgc cgtcctgatt ttttcaattt ctattcctaa aacttcgtca
     3781 ttatacaatt ccagaaaatg gctttcgtac ttaatgtaat ccgtattttg tggatgaaga
     3841 taatcaaaat aaagatggcg tgcgagtgaa aactccgatt taaggcgatt taataccatc
     3901 tccatgggaa tgataaaatc acctgttaca ccgcctcgcg aagcaatcac aagatcatct
     3961 gtagcactcc ctacacatgg gcaatacagg ccatgttctg ataaagtcag atgatttcta
     4021 agacaaaact gtcgatatgg gcttaacact tcgaactctt gttgtgtaag tgcttcatcg
     4081 tgttcgtcag tttcatcatc aacagcatat tctgcgattt tctcgttagt ctgcgctatg
     4141 cgttctaaat agaacgattc ccattgtggt gggatatttt ttgatacaga cgctttaata
     4201 tatcctgctc tcacttcttt tagtaacttg attgaaaatg aagatgaaat aagattgagg
     4261 accataagtg acatcgaacg gttgacccaa gcctgtggta tatctaatcc cttaagattg
     4321 gtaagatcat aatatctcaa tgactcactg agccgaaatt gacttcttaa tgaattagcc
     4381 aaattaacag atagttcagc ctgaaattcc tcctgctcct cagcagatag cttaaaagaa
     4441 cgccagtaga tattttttaa ggaaaccaat tcttctatcg atttgaatgt atggtcattg
     4501 gggttagtaa tgctcaccag attagatagc gcattaccat agttataata gtaaaggcac
     4561 tctcctaaca ctgatataaa tgcttctttg ttatcttcca tcaggttgca accaagctct
     4621 gacgcatttt tattattttg catctgcccg atgtcaacaa gagcacccgc aatgttcgcc
     4681 aatactataa agtagttatc gttcctgatt gttattcttt ccagtttgtt caggaacgca
     4741 actgactgtt gataagattc gtcaaatctt ccaatatcaa ccagttggct aatgaaatta
     4801 ctttcatcga caagttcttt tgttatcaaa ataaattttc cttatacaga ggatttcggt
     4861 gcttcaacag gaggtatgcc ctcacaggag acatctataa ctatcgctga taagcggtct
     4921 cttttatcaa ccggcacagt ttcattaagc atattttcca ttgcactggc gttttcaggt
     4981 tgagatgtat ttttcgccaa atgaggcagg gaattcggtc gagcagaacc aaaccaaaaa
     5041 accagataga taccgtgacc agcagcatcg gggtttttag tataaagctt gtccaattgc
     5101 ccattaagtg cagtccagac atcacgatga taatcacgct ttatctcgat aggtattttt
     5161 atctgcggta gtgaaacaat gatatctgcc cttttatcag aaaccatgtg tccttctggt
     5221 tcacagctta ttttttatgg attaagccgg acacggagta aatccagaaa aatattacgg
     5281 caactctctt caggtttagg cgttagggta cggccatagc tgtcttcatt ccagaattgc
     5341 ttataaatat cggtattttc attggcaatt cggttagaaa tatcccgtat atgatcaagc
     5401 aataatgagt aaagatccat tatgttggca ggcgttttat tcatcaatgt acttacagtc
     5461 tgcttccagt cggcatgatg gaactgtgat tctctataac gaattttctg attgctttgg
     5521 gcatgtgaga gatgatcccg ataactttca cattcaggca gcagtaataa gcgctcaagt
     5581 acttcactag catcg
//
LOCUS       DAJVUY010000215         5439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.216, whole genome shotgun sequence.
ACCESSION   DAJVUY010000215 DAJVUY010000000
VERSION     DAJVUY010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.216"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ72_003889"
                     /gene_synonym="yicO"
     CDS             <1..914
                     /gene="adeQ"
                     /locus_tag="OQQ72_003889"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS2013445.1"
                     /translation="PLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHG
                     VLLGILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGE
                     VDLSGALTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSV
                     SSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAMVPPYAT
                     AGALIFVGVLMTSSLAHVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKV
                     CTGRWRDLNLCVVVVAALFALKIILVD"
     gene            967..1419
                     /locus_tag="OQQ72_003890"
     CDS             967..1419
                     /locus_tag="OQQ72_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HCS2013446.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ72_003891"
                     /pseudo
     CDS             1630..2820
                     /gene="nepI"
                     /locus_tag="OQQ72_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
     gene            complement(2861..3154)
                     /locus_tag="OQQ72_003892"
     CDS             complement(2861..3154)
                     /locus_tag="OQQ72_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013447.1"
                     /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM"
     gene            3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ72_003893"
     CDS             3376..4194
                     /gene="nlpA"
                     /locus_tag="OQQ72_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HCS2013448.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KLVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(4221..5120)
                     /locus_tag="OQQ72_003894"
     CDS             complement(4221..5120)
                     /locus_tag="OQQ72_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS2013449.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(5231..>5439)
                     /locus_tag="OQQ72_003895"
     CDS             complement(5231..>5439)
                     /locus_tag="OQQ72_003895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013450.1"
                     /translation="GMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSY
                     HALFWLAIGMLGIAMICLLFIKDI"
BASE COUNT         1299 a         1238 c         1394 g         1508 t
ORIGIN      
        1 ttcccttaag tttacgtatt ggtatcacca gcggaattgg attatttatc gccttaatgg
       61 gattaaaaaa tactggcgtt attgtcgcca ataaagacac gctggtgatg attggcgatt
      121 taagttctca cggcgtgttg ttaggtattt tagggttttt tattataacc gtgttgtcat
      181 cacgtcattt tcatgccgcg gtgctggttt ctatagtggt gacgtcttgc tgtggattat
      241 ttttcggtga tgttcatttt agcggcgtct attccattcc gcctgatatt agcggcgtca
      301 ttggtgaagt agatttgagc ggcgcgttaa cacttgaact cgccggtatc attttctcct
      361 ttatgctgat caacctattt gattcatcag gaacattaat tggtgtaact gataaagcgg
      421 gcttaataga tggtaacggt aaattcccca atatgaataa ggcgctgtat gttgatagcg
      481 tcagttcggt ggcgggtgcg tttatcggca cctcgtctgt tactgcctat attgaaagta
      541 cttctggtgt ggcagtcggt ggccgcacgg ggctgactgc ggttgtggtt ggcgttatgt
      601 tcctgttggt tatgttcttc tcaccgctgg tggcgatggt tcctccttac gcaaccgccg
      661 gagcgttaat ctttgttggc gtgctgatga cttcgagcct ggcgcacgtt aactgggatg
      721 attttaccga atcggtgcct gcgtttatta ccacggtgat gatgcccttt actttctcga
      781 tcaccgaagg gattgcactc ggctttatgt cgtactgcat catgaaagtg tgcaccgggc
      841 gctggcgcga tctgaacctg tgtgtggtgg tggtcgcagc tctgtttgca ctgaagatta
      901 ttctggtgga ttagtaactg gcgagggttt ccagatatca tgagttctga ttacgcagga
      961 gaactcatga tctggataat gctcgccacg ctggcggtag tgtttgtggt tggttttcgg
     1021 gtgctgacat ccggggccag aaaagcgatt cgccgtctca gtgatcggct gaatatcgat
     1081 gtcgtacccg tggagtcgat ggtcgatcaa atgggaaagt cagccggtga cgaattttta
     1141 cgttatttgc atcgcccgga tgagtcgcac ctgcaaaacg ccgcgcaggt gttgctcatc
     1201 tggcaaattg tcattgtcga tggtagcgaa cagaacctgc tgcaatggca tcggatttta
     1261 caaaaagccc gtcttgccgc gccgattacc gatgctcaag tcaggctggc gctgggtttt
     1321 ctgcgcgaaa ccgaacctga aatgcaggat attaatgctt ttcagatgcg ctataacgcg
     1381 ttctttcagc ctgccgaggg cgttcactgg ctgcattaaa accgcttcgt cttatcagcc
     1441 tacagaccgc gcctgacctg tcgggtggat aagacgttca cgccgcatcc ggtaatcttt
     1501 gccctgttcc gtttcgatct taactccagc tcaagcaaca ccgtaaaagt tgcaaaaacg
     1561 ttaaatgcgt cacacatttc aatgttaaag tggtcggctt ttcccctgaa acatgccacg
     1621 ggtaacacca tgagtgaatt tattgccgaa aaccgcggcg cggatgccat cacccgaccg
     1681 aactggtcag ccgttttctc ggtggcgttt tgtgtcgcct gtctgattat cgttgagttt
     1741 ttgcccgtca gtttgttgac gccaatggcc caggatttag gcatttcgga aggggttgcc
     1801 gggcaatcgg tgaccgtgac cgcctttgtg gcaatgtttg ccagtttgtt tattacccag
     1861 acaattcagg ctactgaccg ctgctacgtt gttattttgt ttgccgtttt gctgacgctc
     1921 tcctgcttgc tggtttcctt tgctaactca ttcagtttgc ttttaatcgg tcgtgcctgt
     1981 ctggggctgg cgctgggcgg gttctgggcg atgtcggcgt cgctgaccat gcgtctggtg
     2041 ccgccgcgta cggtgccgaa ggcgctgtcg gtgatcttcg gcgcggtttc tattgcgctg
     2101 gtgattgccg cgccgttggg cagtttttta ggcgagctta tcggttggcg caatgtcttt
     2161 aatgcggcgg cggtgatggg cgtgctgtgt attttctgga ttatcaaatc attgccttca
     2221 ctgccaggcg aaccctcgca tcagaaacaa aatactttcc gcttattaca acgtccgggt
     2281 gtgatggcag ggatgatcgc catcttcatg tctttcgccg ggcagtttgc tttcttcacg
     2341 tatattcgcc cggtgtatat gaacctggcg ggattcggcg tggatggctt aacgctggtg
     2401 ctgttgagtt ttggtatcgc cagctttatt ggtacgtcgc tttcgtcgtt cattcttaaa
     2461 cgttcggtaa aactggcctt agcaggcgcg ccgtgaatac tggctgtgag tgcgttggta
     2521 ctgacgttgt ggggaagcga taaaatcgtt gctaccggcg tggcgattat ctgggggcta
     2581 acttttgcat tggttcccgt cggctggtca acgtggatca cccgctcgct ggccgatcag
     2641 gcagaaaaag ccgggtctat tcaggtggcg gttattcagc ttgctaatac ctgtggcgcg
     2701 gcaatcggcg gttatgcgct ggataatatt ggtctgactt cgccgttgat gttgtccggc
     2761 acattgatgt tgctgactgc attgttggtt actgcaaagg tgaaaatgaa gaaatcctga
     2821 tatcaggtaa agaagcgttg gtcagtagtt gttgctgttc ttacatatcc gggcattcta
     2881 ccttacccaa cgcttcccaa taattgctct gattattacg ttccatcgcc acgatggcct
     2941 cgcgtatatg ttgtttattg ttttcatctg acaacattaa cttttcccac gcttcatctg
     3001 ataatgacgc ctgtggcgtg caaattttac gtaaatcttg taataccgtg gttttctctt
     3061 ttgcggactg cagtgagcta aaaggcgact cggcgtatac gatgcctggc atagcgaaaa
     3121 aagtgaaaat aagcagtagt gtcgttggtt tcatggattc aaccttttac aaatgtgtat
     3181 cgaatgaagc ataagtgtag tttgctttca tcgctctcat cattctgtac gaaacgcgct
     3241 tgcgtggtca gtaagaagtg ccagacttta tattccactt ttattccttt ttattcttat
     3301 cgatagcgtt tcgtttttta aaccgcagcg accttaccgc tatagtcagg taatcattaa
     3361 taaaaggata aaaaaatgaa actgacaaca catcatctac ggacaggggc cgcattattg
     3421 ctggccggaa ttctgctggc aggttgcgac cagagtagca gcgatgcaaa acacattaaa
     3481 gttggcgtta taaatggcgc agaacaagat gtcgcggaag tcgctaaaaa ggtggcaaaa
     3541 gagaaatatg gcctcgatgt tgaactggta ggatttagcg gttcgttgct accgaacgat
     3601 gcgacaaatc atggcgaact tgatgcgaat gtcttccagc atcgaccctt tcttgaacaa
     3661 gataatcagg cgcatggtta taaactggta gcggtgggaa atacgtttgt cttccctatg
     3721 gcgggttatt ccaaaaaaat cacaaccgtg gcgcaaataa aagaaggcgc gacagtggcg
     3781 atccccaacg acccgaccaa ccttggtcgc gcacttttac tgttgcaaaa agagaagcta
     3841 attactctga aagagggaaa agggttatta cataccgcgc tggatataac cgataatcct
     3901 cgtcatttgc agattatgga actcgagggg gcgcagcttc cgcgcgtact ggatgatccc
     3961 aaagttgatg tagcgattat cagcaccact tacattcagc agacagggct ttctccggtg
     4021 cacgacagcg tatttattga agataagaat tcgccgtatg tgaatatttt ggtggcacgg
     4081 gaagataata agaatgcaga aaacgtgaag gaatttctgc aatcttatca atcacccgaa
     4141 gtcgctaaag cggcagaaac catttttaac ggtggcgcgg tgcctggctg gtaattctca
     4201 ctcatgccgc gccggacgat ttatttttct ggccggcgac gggaatccat tgaaatcaaa
     4261 atcaccgatg acagaatcag cagcgttccc agccagtccg gtaatgtgaa cgtgatcccc
     4321 agcaacagca aagagagtag cgcgctactt aatggttctg cacagctcaa aatgctggct
     4381 tttggaccgc caattaattg tgctcctttc aggtacagac taaatgtcag ggacgtacca
     4441 atgaccacca aataaaaaaa cgccagaatc aaactgccgt taacgacaaa gtttgttcct
     4501 tgtctggcat aaaaaggcaa cagaatcaga ccgccaatca gcatactcca gccgacgact
     4561 ggtaacgtgc catagcgggc aattagcgtt gagggatagg tggtatagaa tgcagcagca
     4621 aatgccgagg caatgcccca gaacaacgcg gcaggagaga gcgataatga cgtcggatta
     4681 ccgtgtgtca ccaataaaaa agtcccgacc agcgatgtca aaatagcgca gaaaaccaga
     4741 atgcccgggc gcgatttacg caccagtgag aaccaggcga cgataatcgt cggtgagagg
     4801 aattgcagca ccgttgccgt ggctgcgttc gatttttcga tggttagcaa aaaagtgagc
     4861 tgtacagtta gcgcgccaac cacggaaaaa atcagcaggc taatggcatc tttatgattg
     4921 ttaataatag aaaagatttt atcgccatga acaaatgaca gcgtcagtag aatcaaaccg
     4981 gcgaatatca aacgcgtcat agtcaaaaac tgcgacgaca tctggctttg ctccatgatg
     5041 tattgcgcgc agacccctga acttccccac aacacggcgg caatcagaac gttcagcatc
     5101 ccctttctgg tggaacccat ttttccctct gcatactgtt ttgtcgttta tgtatgcagg
     5161 catgatagca aaaatggcga ggatggctct gtttgcgcca cgccgatttt tcttagccca
     5221 gactggtgag ctaaatatct ttaataaaca gcaggcaaat catcgcaata cccaacatcc
     5281 ctatcgccag ccagaacaac gcatggtagc tccagatttc aaccataatt ccgtcaacag
     5341 agccggcgat aatccagccg acgcgtgaag tatttgcata taacgttgtc gcagagccta
     5401 ttttttcagg cattaagtcc tgaaaataaa gcatgccga
//
LOCUS       DAJVUY010000216         5430 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.217, whole genome shotgun sequence.
ACCESSION   DAJVUY010000216 DAJVUY010000000
VERSION     DAJVUY010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.217"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ72_003896"
     CDS             complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ72_003896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCS2013451.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENSYRQMQMNAQAEKVAKIIAANSSNT"
     gene            907..1887
                     /gene="rluD"
                     /locus_tag="OQQ72_003897"
     CDS             907..1887
                     /gene="rluD"
                     /locus_tag="OQQ72_003897"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HCS2013452.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ72_003898"
     CDS             1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ72_003898"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HCS2013453.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ72_003899"
     CDS             2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ72_003899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HCS2013454.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1344 a         1289 c         1475 g         1322 t
ORIGIN      
        1 ctcaagggct gccgttttgt gtttcaggtt tctgttatgt attgctgctg tttgcggcga
       61 tgattttcgc tactttttca gcttgcgcat tcatctgcat ctgacggtat gaattttcca
      121 tcagtggcag cgcatcacgc gtagcctggg tatccgggta gtcgcgcaac atgccttcta
      181 cgcggttaac gacggcaacc catgcaccac gttctgtata gtactcggca acggagtatt
      241 catatttcgc cagacgatct ttcaggaata ccagacgttt ggttgcatcg gtagtgtact
      301 gactgttcgg atagccgcgc accagtttgg aaaagtcact aaacgcagct cgtgcatgtt
      361 gaggatcgcg atcgctacgg tcaacgccaa agaacccttg cagcgcactg tcatccagcg
      421 ccatattggt caggccacgc atgtacatga cataatcgat attcggatgg gtcgggttaa
      481 ggcgaataaa acgatcgatg gcagcctgtg ctaacggcaa atcggcgttt ttatagtagg
      541 cgtagatgag atccagctgc acctgctgcg aatacggacc aaacggatag cgattatcta
      601 atgcttccag ttgcgttatt gcctgtctcc agttaccgtc ctgcagcttt tgttgtgcag
      661 tcgcgtaaat ttcatttggt ggattatcag gtacttcttc ctttgacccc gagcaacccg
      721 ccaaaaacag gcttagtgtg gcggctgcca ccagatattt catgcgcgtc atgacgtttt
      781 gactttcctc aaaatgtaat acgggagatt ctctgttcct gctcccggtt aagaccagct
      841 acaatagcac actatattaa acggcaaagc cgtaaaaccc caacgataaa cgaagaagca
      901 gtatatatgg cacaacgagt acagctcact gcaacggtgt ccgaaaacca actcggtcaa
      961 cgcttagatc aggctttggc cgaaatgttc ccggattatt cacgttcgcg aataaaagaa
     1021 tggatcctcg accagcgcgt gctggtaaac ggcaaagttt gtgataagcc gaaagaaaaa
     1081 gtattgggtg gcgagcaggt tgccatcaac gctgagattg aagaagaagc gcgttttgaa
     1141 ccgcaggata tcccgctgga tatcgtctat gaagatgaag atatcatcgt cattaataaa
     1201 ccgcgcgacc tggtggtaca tcctggcgcg ggtaacctgg atggcacggt actgaatgcg
     1261 ttgcttcatt attatccgcc cattgccgat gtaccgcgtg cgggcatcgt ccatcgtctg
     1321 gataaagaca ccactggcct gatggttgtg gcaaaaaccg ttccggctca gacgcgttta
     1381 gtcgaatctt tgcaaaggcg tgaaattact cgtgagtatg aagcggtggc aattggtcat
     1441 atgaccgctg gcggtacagt agatgaacca atcagccgcc acccgaccaa acgtactcac
     1501 atggcggtgc atcccatggg caaaccggcg gtcactcact atcgcatcat ggaacacttc
     1561 cgtgtgcaca cgcgtctgcg gttgcgtctg gaaaccggac gtacgcacca gatccgcgtg
     1621 catatggcgc atattaccca tccgctggtg ggcgatccgg tttatggtgg ccgtccgcgt
     1681 ccgccaaaag gtgcttcgga agcgtttatc tccacgctgc gtaagtttga ccgccaggcg
     1741 cttcatgcaa ctatgctgcg tctttatcac ccgatctccg gcatcgaaat ggaatggcat
     1801 gcgcctattc cagaagatat ggtggagttg attgaggtta tgcgcgccga tttcgaagag
     1861 cataaggatg aagtggactg gttatgagta agctgattgt cccgcagtgg ccgctgccaa
     1921 aaggtgttgc ggcctgtagc tctacccgta tcggcggcgt gagcttgcca ccttacgact
     1981 ctctcaacct tggcgctcat tgtggtgata acccggagca cgtagaggag aatcgcaagc
     2041 aactttttgc tgcgggaaat ttgccttcaa aaccggtctg gcttgagcag gtacacggca
     2101 aagatgtgct taagctcact ggcgaacctt atgcctcaaa acgggcggat gcctcttata
     2161 gcaatacgcc cggcacggtt tgcgcagtga tgactgccga ctgcctccct gtgctgtttt
     2221 gcaatcgagc gggaacggaa gtcgccgccg ttcatgctgg ctggcgtgga ctgtgcgcag
     2281 gcgtgctgga agagacggtt tcctgttttg ctgataaacc tgaaaacatt ctcgcctggt
     2341 tagggccggc aattggtcca cgcgcgttcg aagtgggggc ggaggttcgc gaggcgttta
     2401 tggcagtaga cgctaaagca agtgcagctt tcattcagca tggtgataag tatctggcgg
     2461 atatttatca gcttgcccgg cagcgtctgg cgaacgtggg tgttgagcaa attttcggcg
     2521 gcgaccgttg tacatatacg gaaaatgaga ctttcttctc ttatcgtcgc gacaagacca
     2581 ccggtcgtat ggcaagtttc atttggctga tataacctaa agaatcaaga cgattcggta
     2641 cgcgtgattt tcttttcaca ttaatctggt caataacctt gaataattga gggatgacct
     2701 catttaatct ccagtagcaa ctttgatccg ttatgggagg agttatgcgt ctggatcgtc
     2761 ttactaataa attccagctt gctcttgccg atgcccaatc acttgcactc gggcacgaca
     2821 accaattcat cgaaccactt catttaatga gcgccctgct gaatcaggaa gggggttcgg
     2881 ttagtccttt attaacatcc gctggcataa atgctggcca gttgcgcaca gatatcaatc
     2941 aggcattaaa tcgtttaccg caggttgaag gtactggtgg tgatgtccag ccatcacagg
     3001 atctggtgcg cgttcttaat ctttgcgaca agctggcgca aaaacgaggt gataacttta
     3061 tctcgtcaga actgttcgtt ctggcggcac ttgagtctcg cggcacgctg gccgacatcc
     3121 tgaaagcagc aggggcgacc accgccaaca ttactcaagc gattgaacaa atgcgtggag
     3181 gtgaaagcgt gaacgatcaa ggtgctgaag accaacgtca ggctttgaaa aaatatacca
     3241 tcgaccttac cgaacgagcc gaacagggca aactcgatcc ggtgattggt cgtgatgaag
     3301 aaattcgccg taccattcag gtgctgcaac gtcgtactaa aaataacccg gtactgattg
     3361 gtgaacccgg cgtcggtaaa actgccatcg ttgaaggtct ggcgcagcgt attatcaacg
     3421 gcgaagtgcc ggaaggattg aaaggccgcc gcgtactggc gctggatatg ggcgcgctgg
     3481 tggctggggc gaaatatcgc ggtgagtttg aagaacgttt aaaaggcgtg cttaacgatc
     3541 ttgccaaaca ggaaggcaac gtcatcctgt ttatcgacga attacatacc atggtcggcg
     3601 cgggtaaagc cgatggcgca atggacgccg gaaacatgct gaaaccggcg ctggcgcgtg
     3661 gtgaattgca ctgcgtaggt gccacgacgc ttgacgaata tcgccagtac atcgaaaaag
     3721 atgctgcgct ggaacgtcgt ttccagaaag tgtttgttgc cgagccttct gttgaagata
     3781 ccattgcgat tctgcgtggc ctgaaagaac gttacgaatt gcaccaccat gtgcaaatta
     3841 ctgacccggc aattgttgca gcagcgacgt tgtctcatcg ctacattgct gaccgtcagc
     3901 tgccggataa agccatcgac ctgatcgatg aagcagcatc cagcattcgt atgcagattg
     3961 actcaaaacc agaagaactc gaccgactcg atcgtcgtat catccagctc aaactggaac
     4021 aacaggcgtt aatgaaagag tctgatgaag ccagtaaaaa acgcctggat atgctcaacg
     4081 aagaactgag cgacaaagaa cgtcagtact ccgagttaga agaagagtgg aaagcagaaa
     4141 aggcatcgct ttctggtacg cagaccatta aagcggaact ggaacaggcg aaaatcgcta
     4201 ttgaacaggc tcgccgtgtg ggggacctgg cgcggatgtc tgaactgcaa tacggcaaaa
     4261 tcccggaact ggaaaagcaa ctggaagccg caacgcagct cgaaggcaaa actatgcgtc
     4321 tgttgcgtaa taaagtgacc gacgccgaaa ttgctgaagt gctggcgcgt tggacgggga
     4381 ttccggtttc tcgcatgatg gaaagcgagc gcgaaaaact gctgcgtatg gagcaagaac
     4441 tgcaccatcg cgtcattggt cagaacgaag cggttgatgc ggtatctaac gctattcgcc
     4501 gtagccgtgc ggggttggcg gatccaaatc gcccgattgg ttcattcctg ttcctcggcc
     4561 caacgggtgt ggggaaaact gagctttgta aggcgctggc gaactttatg tttgatagcg
     4621 acgaggcgat ggtccgtatc gatatgtccg agtttatgga gaaacactcg gtgtctcgtc
     4681 tggttggtgc gcctccggga tatgtcggtt atgaagaagg tggctacctg accgaagctg
     4741 tgcgtcgtcg tccgtattcc gtcatcctgc tggatgaagt ggaaaaagcg catccggatg
     4801 tcttcaacat tctgttgcag gtactggatg atggtcgtct gactgacggg caggggagaa
     4861 cggtcgactt ccgtaatacg gttgtcatta tgacctctaa cctcggttcc gatttgattc
     4921 aggaacgctt cggtgaactg gattatgcgc acatgaaaga gctggtgctc ggtgtggtaa
     4981 gccataactt ccgtccggaa ttcattaacc gtattgatga agtggtggtc ttccatccgc
     5041 tgggtgaaca gcacattgcc tcgattgcgc agattcagtt gaaacgtctg tacaaacgtc
     5101 tggaagaacg tggttatgaa atccacattt ctgacgaggc gctgaaactg ctgagcgaga
     5161 acggttacga tccagtctat ggtgcacgtc ctttgaaacg tgctatccag cagcagatcg
     5221 aaaacccgct ggcacagcaa atactgtctg gtgaattggt tccgggtaaa gtgattcgcc
     5281 tggaagttaa tgaagaccgg attgtcgctg tccagtaatg ataaaacgag cccttcgggg
     5341 ctcgtttttg tctataagtt agacggaaaa gactatattt aagatgtttt gcctgaaaaa
     5401 tgagcgaacg ataaagtttt tatatttttc
//
LOCUS       DAJVUY010000217         5340 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.218, whole genome shotgun sequence.
ACCESSION   DAJVUY010000217 DAJVUY010000000
VERSION     DAJVUY010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5340
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.218"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(892..1833)
                     /gene="fabY"
                     /locus_tag="OQQ72_003900"
                     /gene_synonym="yiiD"
     CDS             complement(892..1833)
                     /gene="fabY"
                     /locus_tag="OQQ72_003900"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HCS2013455.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1878..2315)
                     /gene="dtd"
                     /locus_tag="OQQ72_003901"
     CDS             complement(1878..2315)
                     /gene="dtd"
                     /locus_tag="OQQ72_003901"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HCS2013456.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2312..3185)
                     /locus_tag="OQQ72_003902"
                     /pseudo
     CDS             complement(2312..3185)
                     /locus_tag="OQQ72_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
     gene            complement(3179..3778)
                     /gene="yihX"
                     /locus_tag="OQQ72_003903"
     CDS             complement(3179..3778)
                     /gene="yihX"
                     /locus_tag="OQQ72_003903"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HCS2013457.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
     gene            complement(3919..4806)
                     /locus_tag="OQQ72_003904"
     CDS             complement(3919..4806)
                     /locus_tag="OQQ72_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS2013458.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPES"
     gene            complement(4796..>5340)
                     /locus_tag="OQQ72_003905"
     CDS             complement(4796..>5340)
                     /locus_tag="OQQ72_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013459.1"
                     /translation="GIVYISSQLVLSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQK
                     SLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFGT
                     KVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLIE
                     PTDEQETASYRYIREQSHEN"
BASE COUNT         1442 a         1346 c         1253 g         1299 t
ORIGIN      
        1 tctgataaat gaagaaaaac cgtattcatc gccattacca ccaccttacc tatattactc
       61 attaatgtat gtgcgaaaat tacgccggaa aatcattaaa aaaaagcgga tttttgcatg
      121 ttgttttgtt tttgcgaggc gttttccaga aataataaga gtgttgcagt tgtttcattt
      181 attactcaaa aatggtttag ttatcgccca ggatgaatta tgggtgctat gaatatatta
      241 tattcagaga tatttatttg cataatctga atggtgtagc cgaaaaacgt cagcatccta
      301 acagcaccag gatttaaggt gaaattaatc tttcatcaca gaccggtcag tactgccacc
      361 aaccggtctt tacttgctca tcgttataat tttgttggta acagttcggg aaagttgttt
      421 ttctaaatta acaacagaat aactttcttg tttaatgaga ttaatattgg caaccattat
      481 agcctccttc ccacggttta agagcaaaca tacaacataa tgattcataa catacagagc
      541 agtaaatgaa tgatactgac aatgatgcca gcccattatc tttgcataat gtttgtgagc
      601 tatagatttt aaaaatattt atgaggaaag tatggcacca gaggaggttt tgactatcaa
      661 aaatcgctca aacctgaact aagatgatga gttaagcatt atctgcgata attgccactc
      721 agctctacaa ataatattta aatgctcctg aacagtgatg tagcaagaca cgtatggtgc
      781 caacgaagaa taaaaattta tagagttctt attcaatatt accggcatag acagggaatg
      841 atgtaaatga ccggaatgaa tgagagaggc agcaccgccc ctctccataa gctactcttc
      901 ttcgttcccg ccctcttcat acgggccaaa tggcttcgcg ggcagaacga tatacgtgcc
      961 ttcaaacact gcacccggcg tctcgtcgcc aaagatttca acttgcatct gcacccgtgc
     1021 ttttcgtccg cgcgccagac ggtcgagatc gccgcttaag gcaccaaggt cggctaccgc
     1081 atgaggttta ccgctaatcg gcttgctgta gcggatatgc gcatcggcca gaataatcgt
     1141 tccgccgagg tggcgttcgc gcagcatcag ccagataagc ccccaaccgg tgagcgttgc
     1201 cagcgagaat aaactcccgg caaacagcgt atggtgcgga ttctgattac cggtttccgg
     1261 catggtggtg ataaattttt gcccggtata ttgctgaatg cgcacgccca ttttttcact
     1321 aagcgggatg tgttcgtacc acgcctgttg cagctgcgcg caccagtcgc cgcgatgcaa
     1381 aatatcatcc agagtggcaa caggtttaat catcaaaaaa tggcgaatcg gcgtggtggt
     1441 tggtgtggtg atttctccct gattaacaaa ccccagcttg gcgaaaaact ccaccgcgtc
     1501 ttcacgggcg ctacaggtca cgcgcttaac gccttcctga cgcgccaccg actccagggt
     1561 catcgccatc aacgtcccca gccctttgtc ctgcacgtcg ggatgaacgg ccataaagcg
     1621 aatggacgct tcattgtcgg cattaatata cagtcggcct accgccacca gattcccctg
     1681 ctcgtcgacg accatctgat gatgcgccat cgcatcccac gcgtcgcgtt ccgaaccttt
     1741 tggttgatgc aggggcttac gcaacatttc ccagcgaaac tgatagtaac gctctaactc
     1801 ttcttctgtt tgtggaaccc gaaggtgata catagcgata ctctctcttg tttcccgtga
     1861 caaccctgga agctggctca tacctgcaac cagaatgtca cggggccatc attgaccagc
     1921 gatacctgca tatcggcagc gaagcgtcct gtttgcgtgt tcatctcttg ctggcggcag
     1981 cgttcgacga aatagtcata taacgcctct gcgcgatccg gtgatgcgcc tttggagaaa
     2041 cttgggcgca tcccccgttc ggtatctgcg gcgagggtaa actgggaaac caccagtaca
     2101 ctgccgcccg cctgttgcac gttgagattc atcttgcctt cggcatcgct aaagatgcgg
     2161 tagccgagca cacgctcgca cagacggttt gctttctgtt cgtcgtcatc cttttcgaca
     2221 cccaataaca ccaaaagtcc cgcgccaatt tcgcccgtca cttctccctc cacggtgacg
     2281 ctggcacggg ttacgcgttg aattaatgca atcatggttc gtcgtcttct tcttgttcag
     2341 ctgcttgttt tagtttgcgg tattccccga gagtgacagt aatttccgcg ccaagcaaga
     2401 cgatacacca tgtccagtag acccaaacaa agagaatggg gatcaccgcc agcacaccgt
     2461 aaatgagctg atatgacggg aacatggtga tataaagcgc gaaacctttc tttcctgctt
     2521 cgaacaggag tgcggcgaca aacgcgccga caatcgcgtc gcggttaggt acgcggatgg
     2581 taggaacaat gctgtacagc aaccagaagg agatccacga caacagcaac ggaaaaatac
     2641 gcagcacgtt gtcgatgaca gtattgagat cgctcgccca gcgcagggag agcaaatagg
     2701 aactgatcgc cagactggcc cctgccagca gcggccccag cgttaaaatc atccagtaca
     2761 cggcgaacga gtaaattttt ggtcgcgctc gtttactgcg ccagatggta ttcaacgcgc
     2821 tatcgatgga gtacatcaac aataacgcgg tgacgatcag cccgcacgcc ccaacggcgg
     2881 tcatcttgtt ggaattggca acaaattgtt cgatataccg ctgaataaca tcgccagtag
     2941 caggcagaaa gttggcaaaa ataaagtgac gtaactgaat gctgacgtcg gaaaacatgg
     3001 gaaaagcggc gaaaagcgca aaaacaacgg caaccagcgg cactaatgag agcaacgacc
     3061 acataggcaa ggttacctgc cagggttgtc atgttgtcct catcaatacg ttgccagagt
     3121 agttttagcc aggcccatag tggacgggta cggtgcctgg ctttgtcctg aatggttttt
     3181 agcataacac cttcgcgaaa tagtccggga tggtggtttt atctttcacc agaatactgg
     3241 taatgcccag ctgattggct ccttctatat tatcggcgtt atcgtcgaaa aagaccgtat
     3301 cgctgggtga aaaaccttcc gcctgcaaaa catgctggta aattcgtgct tcaggtttgc
     3361 gcatccccag atcttgcgac agatagatat ggtcagcagc atcacgaatt tccgggtatt
     3421 cttccggcca gaaggtggta tgcaggcggt tggtattgga aagcaccacc acgcgatgcc
     3481 cctgctcacg cagtttatgc atgatggcga tcacttccgg gcgcagcgca acaaacaccg
     3541 cctgccagcc gtgagagaac tgctcgtagc ttagcggtag agccatctca tgacacagcg
     3601 cctctgcgaa cgcttcgtcg ctaatttccc cacgctcatg ctgatgaaac gcctccccca
     3661 tatgaaaact cttcttaagc gtagccagtg gaacacgcgt taaatcgctc caggctccca
     3721 gcacacggtt aaagtcgata tcgacaatca cattacctaa atcaaagata tagagcattt
     3781 ttgcctcctt tcgcgccaca agaaattaac tgtagcggga aaggatgggt ttggctatgt
     3841 ggcaataagg gtaatcttgt gatgctgatt gcgaaaaagc agagtaattt cactggcttt
     3901 ttcgcaatag atgaatggtt aagattcagg tgtaaattgc caacgagttt cgatgaccag
     3961 cggcctatct ggtgtcacca attccggcgt tagatttatt gcgttaggtg cctgagtcag
     4021 cgggttaata caggtggcat cgggctgttt atcaaatacc accagactgt ttgcagaaga
     4081 gatcatggtc atcgcgagtt taccaggcca cagtaactta accttcaccc cgttataaaa
     4141 accaaaacag tcatcccagg gaccggcttg aggagagata cgatttccag ttggcagttc
     4201 atcactaccc gcttcttctt gccagtccgc atcaaaaagc acctgcaacg attctgtatt
     4261 ttgcggagtc agctttttcg caaaccacgg atgccagcca gcggaggccg ggaatgtatc
     4321 ggcatatgaa tggacttcca gttgcaaaac cagcgcatcg ttctccagca aaaaagtctg
     4381 aatcacttcc ccttgccagg gccacggtga agccaggggc atacgtaaag tcagggaatc
     4441 tgctgttttg tcgatgattt cccacgttga gtaacaagcc ataccatgca acgcatgtgg
     4501 tggtttattg gcgggtaaag aataacattg cccaccagca ttcagcgtcg cattccccag
     4561 tcgccctgcc cacggcacca ttgggaaaca gccatactga aaagctctgc gctgcggctg
     4621 ccattggcgt aatacttcag aaccaaatgc ctttaacgag gttatcctgg caccatcatg
     4681 cggataaatc tgcaggtgaa tattgccttt ttccagcgtc actaactctc ctacaggccc
     4741 aggccatggc gcgtcaaacg cctgttgtag cgccaggtaa tgctcgtttt ttcgttcagt
     4801 tttcatgaga ttgttccctg atgtagcggt aagaagcggt ttcttgttca tcggtcggct
     4861 caatcagcca gacgcaaaca aaggaaagaa ctgagacagc aaataaaaac agagcgacat
     4921 accacggttt tcctccccct agcgccagca aacttgaggc gataaggggg cttagtccgc
     4981 caagaatcgc ggaaaattga taagcaaaag aaaggccggt atatcgtact ttggtaccga
     5041 acatgcgggt gaaaagtgtt ggctgcacgg caaacatcat cgtcggacct aagttgtagc
     5101 cgaggatcat actgcaccag atgatgagcg tacttttgct atccagtaat aagaagaaag
     5161 gaaacgcgaa caggacacaa aatcctgctc ccgacaaata cagacttttt tgacctatac
     5221 gatctgataa ccatccaacc aatggacaac tgaaaatacc gatcgccgag gcaatcaaca
     5281 tacccgtcag gggaatatct cgcgacaata ctaattggct ggaaatatag acaataccaa
//
LOCUS       DAJVUY010000218         5324 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.219, whole genome shotgun sequence.
ACCESSION   DAJVUY010000218 DAJVUY010000000
VERSION     DAJVUY010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5324
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.219"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            275..616
                     /gene="raiA"
                     /locus_tag="OQQ72_003906"
     CDS             275..616
                     /gene="raiA"
                     /locus_tag="OQQ72_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HCS2013460.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
     misc_feature    719..844
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            720..767
                     /gene="pheL"
                     /locus_tag="OQQ72_003907"
     CDS             720..767
                     /gene="pheL"
                     /locus_tag="OQQ72_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheA operon leader peptide PheL"
                     /protein_id="HCS2013461.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            867..2027
                     /gene="pheA"
                     /locus_tag="OQQ72_003908"
     CDS             867..2027
                     /gene="pheA"
                     /locus_tag="OQQ72_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HCS2013462.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     gene            complement(2070..3191)
                     /gene="tyrA"
                     /locus_tag="OQQ72_003909"
     CDS             complement(2070..3191)
                     /gene="tyrA"
                     /locus_tag="OQQ72_003909"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HCS2013463.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLKQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3202..4272)
                     /gene="aroF"
                     /locus_tag="OQQ72_003910"
     CDS             complement(3202..4272)
                     /gene="aroF"
                     /locus_tag="OQQ72_003910"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HCS2013464.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDLETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            4480..4845
                     /locus_tag="OQQ72_003911"
     CDS             4480..4845
                     /locus_tag="OQQ72_003911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HCS2013465.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            4995..>5324
                     /locus_tag="OQQ72_003912"
     CDS             4995..>5324
                     /locus_tag="OQQ72_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS2013466.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP
                     TFQMELTE"
BASE COUNT         1453 a         1351 c         1198 g         1322 t
ORIGIN      
        1 agtcagttgc ttaactgact ggcattacag cccttgagct gccgtttttt tattctgtta
       61 gttgtgaaac tgaagcgatt tagtcactat cgatctcatc aaatatggct cgctttgaga
      121 tattcctcaa gtaaaaaaac acctcttcct gcgatttctc acaaaaaaga ttcgttgaca
      181 aaaagtgaca aaattatgag attcccatca cacattttga catcaggaac ggtatgctga
      241 attcaccaag acgggaagac aagaggtaaa atttatgaca atgaacatta ccagcaaaca
      301 aatggaaatt actccggcca tccgccaaca tgtcgcagac cgtctcgcca aactggaaaa
      361 atggcaaaca catctgatta atccacatat cattctgtcc aaagagccac aagggtttgt
      421 tgctgacgcc acaatcaata cacctaacgg cgttctggtt gccagtggta aacatgaaga
      481 tatgtacact gcaattaacg aattgatcaa caagctggaa cggcagctca ataaactgca
      541 gcacaaaggc gaagcacgtc gtgccgcaac atcggtgaaa gacgccaact tcgtcgaaga
      601 agttgaagaa gagtagtcct ttatattgag tgtatcgcca acgcgccttc gggcgcgttt
      661 tttgttgaca gcgtgaaaac agtacgggta ctgtactaaa gtcacttaag gaaacaaaca
      721 tgaaacacac accgtttttc ttcgcattct tttttacctt cccctgaatg ggaggcgttt
      781 cgtcgtgtga aacagaatgc gaagacgaac aataaggcct cccaaaccgg ggggcctttt
      841 ttattgataa caaaaaaggc aacactatga catcggaaaa tccattactg gcgctgcgag
      901 agaaaatcag cgcgctggat gaaaaattat tagcattact ggcagagcgg cgcgaactgg
      961 ccgtcgaggt gggaaaagcc aaactgctct cgcatcgccc ggtacgagat attgatcgtg
     1021 aacgcgattt actggaaaga ttaattacgc tcggtaaagc gcaccatctg gacgcccatt
     1081 acattactcg cctgttccag ctcatcattg aagattccgt attaactcag caggctttgc
     1141 tccagcaaca tctcaataaa attaatccgc actcagcacg catcgctttt ctcggcccca
     1201 aaggttctta ttcccatctt gcggcgcgcc agtatgctgc ccgtcacttt gagcaattca
     1261 ttgaaagtgg ctgcgccaaa tttgccgata tttttaatca ggtggaaacc ggccaggccg
     1321 actatgccgt cgtaccgatt gaaaatacca gctccggtgc cataaacgac gtttacgatc
     1381 tgctgcaaca taccagcttg tcgattgttg gcgagatgac gttaactatc gaccattgtt
     1441 tgttggtctc cggcacgact gatttatcca ccattaatac ggtctacagc catccgcagc
     1501 cattccagca atgcagcaaa ttccttaatc gttatcctca ctggaagatt gaatataccg
     1561 aaagtacgtc tgcggcaatg gaaaaggttg cacaggcaaa atcaccgcat gttgctgcgt
     1621 tgggaagcga agctggcggc actttgtacg gtttgcaggt actggagcgt attgaagcga
     1681 atcagcaaca aaacttcacc cgatttgtgg tgttggcacg taaagccatt aacgtgtctg
     1741 accaggttcc ggcgaaaacg acgttgttaa tggcgaccgg gcaacaagcc ggtgcgctgg
     1801 ttgaagcgtt gctggtgctg cgcaaccaca atctgattat gacccgtctg gaatcacgcc
     1861 cgattcacgg taatccatgg gaagagatgt tttatctgga tattcaggcc aatcttgaat
     1921 cagcggaaat gcaaaaagca ttgaaagagt taggtgaaat tacccgttca atgaaggtat
     1981 tgggctgtta cccaagtgag aacgtagtgc ctgttgatcc aacctgatga aaaggtgccg
     2041 gatgatgtga atcatccggc actggattat tactggcggt tgtcattcgc ctgacgcaat
     2101 aacacgcggc tttcactctg aaaacgctgt gcgtaatcgc cgaaccagtg ctccaccttg
     2161 cggaaactgt caataaacgc ctgcttatcg ccctgcttca gcaactcaat cgcctcgccg
     2221 aaacgcttat agtaacgttt gattaacgcc agattacgct ctgacgacat aataatgtcg
     2281 gcataaagct gcggatcctg agcaaacagt cgcccgacca tcgccagctc aaggcggtaa
     2341 atcggcgaag agagcgccag aagttgctca agctgaacat tttcttctgc cagatgcagc
     2401 ccataagcaa aagtagcaaa gtggcgcaga gcctgaataa acgccatatt ctgatcgtgc
     2461 tcgacagcgc taatacgatg cagccgagcg ccccagacct gaatttgctc cagaaaccat
     2521 tggtatgctt ccggcttacg tccatcacac cagaccacaa cttgctttgc caggctaccg
     2581 ctgtccgggc cgaacatcgg gtgtaacccc agtaccgggc catcgtgcgc cgccagcatg
     2641 gcctgtaatg gtccattttt cactgatgcc agatcaacca gaatacaatc tttcggtaaa
     2701 ggcggtaatt tgccgataac ttgctcagta acgtggattg gcacactaac aatcaccatt
     2761 ccggcatcgg caacaatatc agccgctcga tcccagtcat gttgctccag aatccgcacc
     2821 tgataacccg agagtgtcag catcttctcg aacaggcgtc ccatctgacc gccaccgccg
     2881 acgataacca ccggacgcag tgacggacaa agtgttttaa atcctttgtc gttttcactg
     2941 gagtaagatt cacgcatcac ccgacgcaaa acatcctcaa tcagatctgg cggtaccccc
     3001 agagcttccg cctctgcacg acgcgaggcc aacatagatg cctcgcgctc cggaacataa
     3061 ataggcagtc caaagcggct tttcacctcg cccacttcag caaccagttc cagacgcttc
     3121 gctaataaat tcagcagcgc tttatcgact tcatcaattt gatcgcgtaa tgcggtcaat
     3181 tcagcaacca taataaacct cttaagccac gcgagccgtc agctgcccgt tcagatcctg
     3241 atgaatttca cgcagcaagg catcggtcat ttcccagcta atgcaggcat cggttacgga
     3301 tacaccgtat ttcatttcac tgcgcggttg ctcagaagac tgattgccct cgtggatatt
     3361 actttcgatc atcagaccaa taattgagcg attgccatct ttgatttgag caaccacgga
     3421 ttctgccacc gcaggctgac ggcgataatc tttattggaa ttaccgtggc tgcaatctac
     3481 catcagagac gggcgcagtc ccgcctgttc catctctttt tcacattgcg caacatccgc
     3541 agggctatag ttcggcgctt taccaccgcg caggatgaca tgcccgtccg gattcccctg
     3601 agtttgtagc aacgcaacct gccctgcctg gttaatgcca acaaaacggt gcggctgggc
     3661 ggcggcgcgc atagcgttaa ttgctgttgc cagactgccg tcggtgccgt ttttaaaacc
     3721 aaccggcatg gaaagcccgg aggccatttc acggtgagtt tgcgattccg ttgtacgagc
     3781 accaattgct gaccagctaa acagatcgcc caggtattgc gggctattcg gatctaacgc
     3841 ttccgtcgcc agtggcagtc ccatattcac cagctcaagc agcaatttac gcgcgatctg
     3901 cagcccggct tctacatcaa aagagccatc catatgggga tcgttaatta accctttcca
     3961 gccgacagtg gtacggggtt tttcaaaata gacgcgcatt accagataga ggctatcgct
     4021 gacctctgcg gcaagggctt taaatcgacg agcatattcc agagcagttt ccagatcatg
     4081 aatggaacaa ggaccacaaa ctaccagcag acgaggatcg cgcccggcga taatatctga
     4141 aatggtttta cgcgagtcag caatctgggc ttcttgttgc aggctcaatg gaaaagcggc
     4201 cttcagttgt tccggagtca ttaaaacctg ttcgtcggta atatgtacgt tattcagcgc
     4261 gtctttttgc atgatggcga tcctgtttat gctcgtttgc gatagttgat cctcagcgag
     4321 gatgacgtaa cgataacaca taaagtaaag ttttcaatcc atatttcgta cgcttttctt
     4381 tacacgaaca atttactcgc gctttgatgc ttatttcgta caaataaatt tacaccccct
     4441 ttaaaaacaa tccgctatgc tttgaaaaag gagaaagaaa tgatgaaaaa gtttatcgcc
     4501 cccttattgg ctttactggt tagcggatgt cagattgatc cttatactca cgcgccaacc
     4561 ttgaccagca ccgactggta tgatgtcggt atggaagatg cgatatcggg cagcgccata
     4621 aaagatgacg atgcatttgg cgattcacag gcggatcgcg gtctatacct taaaggatat
     4681 gccgaaggac aaaagaaaac ttgccagacc gattttactt atgcccgggg actttccggt
     4741 aaaagctttc ctgccagctg taacaatgtt gaaagtgcca gccaactgca tgaagtatgg
     4801 caaaaagggg ctgatgaaaa tgccagcaca atacgattaa attaattaaa accccacaaa
     4861 taaattaaac ataagatttt actcattgtg ttttatttct cacattgatg acgatcgcat
     4921 gaaaaaatga tattttaatg agcattctga aaaaatatcg atgcatttcg agcgaagaag
     4981 gtggggatcc ctgaatgcgt ttttctcacc gactgttctt acttctgatt ctcctgctga
     5041 cgggagcacc aatactcgct caggagcctt ctgacgttgc gaaaaacgtg cgtatgatgg
     5101 tttccggtat tgtcagttac acccgctggc ctgcgctatc agggccacca aagttatgta
     5161 tcttttcatc ttcacgtttt agtaccgccc tacaagagaa tgccgcgaca tctttgcctt
     5221 atctgcctgt catcattcac actcaacaag aggcgatgat ttcaggctgc aatggttttt
     5281 attttggcaa cgagtcaccg acattccaga tggaattaac cgaa
//
LOCUS       DAJVUY010000219         5209 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.220, whole genome shotgun sequence.
ACCESSION   DAJVUY010000219 DAJVUY010000000
VERSION     DAJVUY010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5209
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.220"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..118
                     /locus_tag="OQQ72_003913"
     CDS             <1..118
                     /locus_tag="OQQ72_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3829 domain-containing protein"
                     /protein_id="HCS2013467.1"
                     /translation="DWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR"
     gene            complement(168..1916)
                     /locus_tag="OQQ72_003914"
     CDS             complement(168..1916)
                     /locus_tag="OQQ72_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative frv operon regulatory protein"
                     /protein_id="HCS2013468.1"
                     /translation="MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFT
                     LNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDYRLLALLLLNTFTPRAQLASALN
                     LPETWVAERLPRLKQRYERACCLASRPGLGHFIDETEEKRVILLANLLRKDPFLIPLA
                     GVTRDNLQHLSTACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIV
                     EQSGMFLGDNAVRTLTGLIEKQHQQAQVISADHVLGLLQRVPDIASLNIIDTQLVENI
                     TGHLLRCLAAPVWIAEHRQSSMNNLKAAWPAAFDMSLHFITLLREQLDIPLFDNDLIG
                     LYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLNCRVIIARSLSELVAIREE
                     IEPLLIINNSHYLLEDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGS
                     FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNRLAIPHCWS
                     EQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKIFSYLASILCQHPAEVI
                     AGLTGYEAFMELLHKG"
     gene            complement(1916..2986)
                     /locus_tag="OQQ72_003915"
     CDS             complement(1916..2986)
                     /locus_tag="OQQ72_003915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS2013469.1"
                     /translation="MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGS
                     FVARKGNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHK
                     GVKIPGVIGSVAPHALTEKQRQRPLSFDEMFIDIGANSRDEVEKRGVAMGDFISPEAN
                     FACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEH
                     IKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH
                     NDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLI
                     RDFLTTLTAEKVNAFSQFRQMD"
     gene            complement(2976..4427)
                     /locus_tag="OQQ72_003916"
     CDS             complement(2976..4427)
                     /locus_tag="OQQ72_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIBC"
                     /protein_id="HCS2013470.1"
                     /translation="MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQG
                     SSGVENRLSSEEIAAADYVILATGRGLSGDDRARFTGKKVYEIAISQALKNIDQIFSE
                     LPTNSQLFAADSGVKLGKQEMQSGSVMSHLMAGISAALPFVIGGGILVALANMLVQFG
                     LPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLAND
                     KALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVL
                     TYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSL
                     LEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAI
                     PYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLA
                     IGLALNISFIIVLKGLWLRRKAKAAQQELVHEH"
     gene            complement(4438..4884)
                     /locus_tag="OQQ72_003917"
     CDS             complement(4438..4884)
                     /locus_tag="OQQ72_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HCS2013471.1"
                     /translation="MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQT
                     LLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGV
                     PQSGEEDQVKIIGTLCRKIIHKEFIHQLQQGDTDQVLALLNQTLSS"
BASE COUNT         1318 a         1341 c         1316 g         1234 t
ORIGIN      
        1 tgactgggat aaagagcaac ttcaggacgc aaactcaagc tggatggtcg aagactcttt
       61 cccgagagca ttacgcgagt acaacgaaat ggttgatgac tataatagcc tgcgttaaac
      121 gtttttgatg ataaatgcag tgtcggatgc ggcgcatctg acacagttca ccccttgtga
      181 agtaactcca taaatgcctc atatcctgtt aacccggcaa taacctctgc cggatgctga
      241 cacaatatgc ttgccagata gctaaatatt tttagctcat gacgcgcatc ggcggcggcg
      301 caggcgatca agacatggtt aatgacttcg ttattcacct caactggttg ggcgagggta
      361 ataaaaaatc cacgaaaacg tcgctcctgt tcgctccagc aatgtgggat ggcgaggcga
      421 ttaacaatca ggttttcacc ttcgccttcg cgggcgatga tgcgttgtgc ttcatcggcg
      481 gtaatatggt gttgtgcgac taattgcgca caaatttgcc gggtaatatg ttgccagctt
      541 tcaccgcgta cattcgaata atgaaaactt ccgggggcag agaaaaaacg ctccggttgc
      601 tggcgaataa atgccgtcgc cagaaaatgt tttatttgtt cgataccggc agccgtaatg
      661 atatttttta cggtgatgta attatttacc gcgtcttcca gtaaataatg gctattgtta
      721 atgatcaata acggctcaat ctcttcgcga atggcaacaa gttcgcttaa gctacgggca
      781 ataattaccc gacaatttaa aacatcgcgc tcaatggcga gctgattaat agtggcaatc
      841 gcgttctggt ccgagagcaa aatgatcggc tggcgttcgt tttgatgccg ctccagcgca
      901 caggcaaaat acaaaccgat cagatcgttg tcgaaaaggg gaatatcgag ctgttcacgc
      961 agtagcgtaa taaagtgcag actcatatca aaggccgcag gccaggctgc tttcaggtta
     1021 ttcatgctac tttggcggtg ctcagcaatc cacaccggtg cggcaaggca acgtaataaa
     1081 tgcccggtaa tattctcaac caactgcgta tcaataatat tcaatgacgc gatgtctggc
     1141 accctttgca gcaaccccag cacatgatcg gctgaaatta cctgcgcttg ctgatgctgt
     1201 ttctctatca aacctgtcag ggttcttaca gcgttatcac caagaaacat gccgctttgt
     1261 tcaacgattt gttttatctc gtcaccggga tattgcggcc actcatcggt cagttgatta
     1321 cgcagggcgt aaatcgccag aatcaggctg gagagataat caccctgcat gagcggccag
     1381 cggtgttggt tgtcgcaggc cgtggataaa tgctgaaggt tgtctcgtgt tacgcccgcc
     1441 agcggaatta aaaacggatc tttgcgcagc aagttcgcca gcaagataac gcgcttctct
     1501 tctgtctcat caatgaaatg gcccaaaccg gggcggctgg ccaggcaaca agcgcgttca
     1561 taacgctgtt ttaaccgggg cagacgctct gcgacccacg tttctggcaa attaagcgcc
     1621 gaggcgagtt gcgcacgggg agtaaaggta ttcagtaata acagtgccag cagccgatag
     1681 tcgttatcgt gcttttgcag caactgaaaa aagctgcggc gctcgaagat ttccagctga
     1741 tagcccgcac taccactggc ggaaatgcgg gctttgccgt taagggtaaa gttgagatag
     1801 tcaatatcac gcaggatggt cctgcctgaa acgccagtct gttgcgccag ctcaccaggc
     1861 gtgcgcggct gttgctccag cagatcgaca atctttaact ggcgttcgtt tagcattaat
     1921 ccatctgacg gaactggcta aacgcgttga ctttctccgc ggttaaggtg gtcagaaaat
     1981 cccgtatcaa cgtgagcaga gcatcgtaat cggcttttga aatcataccg ctgttagcgt
     2041 gcagatagcg ggttggcagg cacagcgcaa caaccggacg cccgccgccc atcacgttgt
     2101 agcgcccgcc atccgtcgca ccggttttca tggtggaaaa ttgcagcggt aaatcgttat
     2161 gtgcggcaca gctttttaac gctgctacca gtttctggtt ggggaagtag cgcttgtcaa
     2221 acagcatcag ccccggcccc tggcccagtt tcagcgggta tttaatgtta tcaatgcccg
     2281 gaacatcgcc tgcgacagcg gtatccagca cgatcactac atccggttta atgtgttccg
     2341 ccgaggtttg tgccccgcgt agcccaactt cttcttccac gctgccgacg ccatacagcg
     2401 taatttcggg attattcacc gtctgcaata gttcagccat cattgcgcag ccgatgcggt
     2461 tatccagcgc cttgccgacc actttatctt cgccccagca ggcaaaattg gcttccgggc
     2521 taataaaatc gcccatcgcc acaccgcgtt tttccacctc atcgcgactg tttgcgccaa
     2581 tatcaatgaa catctcatca aatgacagcg gccgttgcct ttgcttttcc gttaacgcat
     2641 gaggcgcgac ggaaccaatc acaccaggga ttttcactcc cttgtgtgtg cgtatggtta
     2701 cccggtggtt gagcatcgac tgattccacc agccaccaat ggtggtgaaa cgcagaaaac
     2761 cgctctcgtc gatgtgggtg accataaagc cgacttcatc catatgcccg acaacggcaa
     2821 cttttggacc tttattcccc ttacgggcaa caaagctgcc cagaccatca aaggtgatct
     2881 cattaacgca aggttccagc gtgtttatca gaatgtcgcg aacttcctgt tcatcgccgc
     2941 tgacggcgct ggcttcgcac aactgttgca gtaactcaat gttcatggac aagctcctgt
     3001 tgcgcggctt tcgctttgcg gcgtaaccac aatcctttca ggacgataat gaatgaaatg
     3061 ttcagcgcga ggccaatcgc cagcaccaga taaaacgaac ccaccggcga catcaggccg
     3121 atcagcgggt caaagatacc caaaccaggt gccagacgtt tgattccgaa agcgatcacc
     3181 agcacgccgg taatgccacc cgccagcgta ttggcggtaa tcatcggcaa cggagctgcc
     3241 agagcgtaag gtatagccgg ttcggttgcg actgtggcac cgaccacaat ggcactactg
     3301 gcagcctctt tttcctgtcg ggtaaacagt ttgggcgcaa tgaacgtcgc aagacccgcc
     3361 gcaacgggcg gcatcaacgc gacaacgccg acgatggcgt accagtcata aatgtgtttt
     3421 tccagcagtg agaagcagaa gaaccaggcg gttttattga tggggccgcc catatcgaac
     3481 gccagcatcg caccgaccag aaacgctgct gcaaacttca ttgatggagg aatggtattc
     3541 aggaagtgga gcagcccgcc catgaggtcg gacatcaccg gcccgataac gtagtaagtg
     3601 agcacgccga aaaccagcag agtaacgaac gggatcagca ttgaaccgag cagcggttgt
     3661 aatgctttgc caaggcgcac tttgcggaac cagaagacga aatagccaat cgccagcccc
     3721 agcaccaccg cgccgaggaa tcccgcaccc gactgggtgc cgagcagcgc tttgtcgttc
     3781 gccagatagc aaaccagaaa cgccggagcg aaagccggtt tatcggcaat cgacgaggca
     3841 atataagcgc ccatgatggg gatcataaag gtgaagccaa ggtaaccgat ggattcaact
     3901 acccaggtaa acgacggcgc gcctttcgac atatcggtat acggcaaacc gaactgcacc
     3961 agcatgttgg caagcgccac caggatacca ccgccgatga caaacggcag cgccgcagag
     4021 atgcccgcca tcaggtggct catcacgctg ccgctttgca tttcctgttt gccaagcttc
     4081 acgccactat ctgcggcaaa aagctgcgag tttgtcggta attcgctgaa aatctggtcg
     4141 atatttttca acgcctggga gatggcaatc tcataaactt tcttcccggt aaaccgcgcg
     4201 cgatcatcac cgctcaggcc acgcccggta gcgagaatga cgtaatcggc agcggcaatc
     4261 tcttcgctgg ataagcggtt ttcaacgcca ctggaccctt gagtttccac ttttatggta
     4321 tggccgagag aacgggcttt ctgttccagg gcttccgcca ccatgtaggt gtgagcgatc
     4381 ccggcggggc agttggtgat cgcgacaata cgtaaggatg actccatcgc cacttcctta
     4441 tgagctgagg gtttgattta acaaggcaag cacttggtcg gtatcgccct gttgcagttg
     4501 atgaataaat tccttgtgaa taattttgcg acacagtgtg ccgatgattt tgacctgatc
     4561 ctcttcgccg ctttgcggca cgccgaggca gatccagcaa ttgacgtctt cgccatcgct
     4621 ggctttccag tcaatagcct gcgctttgcg ggcgaataat acgaacggtt gtttaacgca
     4681 ggcgctttta ccgtgcggca cggcgacacc ggaaccaaat ccagtagagt gcattttttc
     4741 gcgcagcagc agggtttgca ggaactggtg tgagtcggtg ataaaaccgt tttgtaacgc
     4801 tattgtcgcc aactgcttca gaacggaata agcgccattg ccctgaatat tcaggtcaat
     4861 acagcttgca gtaagagctg ccattaatcg gactccataa aatatatttt aatcaattgt
     4921 aatggtggag cgattaagtg atgagaggcg atatgtcggt aaacaatgac aatttgagac
     4981 agagtgaaag gtcagatttg cggagtaatg cacataatgg ttatttaaat aaaccacatg
     5041 aatcattaat gggttattca ttatttttgt gatttactca caatgtatca gggaaatata
     5101 acttaccggg agatgtaata tgtttaattt ttcaaatcga aatttaaaat attgtgccgg
     5161 aggcatctcc ggcacattgg gcaattacgg caggtaaaac acttcttgc
//
LOCUS       DAJVUY010000220         4961 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.221, whole genome shotgun sequence.
ACCESSION   DAJVUY010000220 DAJVUY010000000
VERSION     DAJVUY010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4961
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.221"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            390..1364
                     /gene="hemB"
                     /locus_tag="OQQ72_003918"
     CDS             390..1364
                     /gene="hemB"
                     /locus_tag="OQQ72_003918"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HCS2013472.1"
                     /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY
                     KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY
                     AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
     gene            complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="OQQ72_003919"
     CDS             complement(1470..2321)
                     /gene="tauD"
                     /locus_tag="OQQ72_003919"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HCS2013473.1"
                     /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV
                     VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV
                     TFIETPPAGAILAAKELPSTGGDTLWTSGITAYEALSVPFRQLLSGLRAEHDFRKSFP
                     EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES
                     EALLGFLFAHITKPEFQVRWRWQPNDIAIWDNCVTQHYANADYLPQRRIMHRVTILGD
                     KPFYRAG"
     gene            complement(2336..3142)
                     /gene="tauC"
                     /locus_tag="OQQ72_003920"
     CDS             complement(2336..3142)
                     /gene="tauC"
                     /locus_tag="OQQ72_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter permease TauC"
                     /protein_id="HCS2013474.1"
                     /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL
                     QLISPLFLPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGI
                     AMGLSPTVRGILDPVIELYRPVSPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSA
                     LAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAEL
                     IAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTP"
     gene            complement(3139..3906)
                     /gene="tauB"
                     /locus_tag="OQQ72_003921"
     CDS             complement(3139..3906)
                     /gene="tauB"
                     /locus_tag="OQQ72_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter ATP-binding subunit"
                     /protein_id="HCS2013475.1"
                     /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL
                     NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK
                     MQRLEIAHQVLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD
                     AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA
                     RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS"
     gene            complement(3919..4881)
                     /gene="tauA"
                     /locus_tag="OQQ72_003922"
     CDS             complement(3919..4881)
                     /gene="tauA"
                     /locus_tag="OQQ72_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2013476.1"
                     /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQAGNT
                     FAKESGASVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKL
                     GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPPA
                     IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHP
                     EVVKAFAKSAIDAQQPYIANPDAWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ
                     QQTAELTGPVNKVIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ"
BASE COUNT         1184 a         1416 c         1242 g         1119 t
ORIGIN      
        1 tggacatata taatttatgg agaaaaacac gcatcaaatt gataaaagga cgatatttca
       61 acatgttgca gataatgtta tttttgatac atacgcgtta taaatatcaa aaacacaaac
      121 cagataaata tcttatcaat atacaacaaa gtttgaatta ttcaatttat agcagcacaa
      181 ccaaacgcaa aaaaaaataa taaccaagag ctataaataa agattaaaaa tattttcagt
      241 gaatatgaac ttattgctat ttctattaca aagatgtcct ggtctctctt tcattctctt
      301 cttgtcaaca tcacgacaac tttcgtaaaa cactcctgcc ccgcttcagg tatactgtgc
      361 accttaattc cacaaacatc aggcagacca tgacagactt aatccaacgc cctcgtcgcc
      421 tgcgcaaatc tcctgcgctg cgcgctatgt ttgaagagac aacacttagc cttaacgacc
      481 tggtgttgcc gatctttgtt gaagaagaaa ttgacgacta caaagccgtt gaagccatgc
      541 caggcgtgat gcgcattcca gagaaacatc tggcacgcga aattgaacgc atcgccaacg
      601 ccggtattcg ttccgtgatg actttcggca tctctcacca taccgatgaa accggcagcg
      661 acgcctggcg ggaagatgga ctggtggcgc gtatgtcgcg catctgcaag cagactgtgc
      721 cagaaatgat cgtcatgtca gacacttgtt tctgtgaata cacttctcac ggtcactgcg
      781 gtgtgctgtg cgagcatggc gtcgacaacg acgcgactct ggaaaattta ggcaagcaag
      841 ccgtggttgc agctgctgca ggcgcagact tcatcgcccc ttccgccgcg atggacggcc
      901 aggtacaggc gattcgtcag gcgctggacg ctgcaggctt taaagatacg gcgattatgt
      961 cgtattcgac caagttcgcc tcttcctttt atggcccgtt ccgtgaagct gccggaagcg
     1021 cattaaaagg cgaccgcaaa agctatcaga tgaaccctat gaaccgtcgc gaggcgattc
     1081 gtgagtcact gctggatgaa gcccagggcg cagactgcct gatggttaaa cctgctggag
     1141 cgtacctcga catcgtgcgt gagctgcgtg aacgtactga attgccgatt ggcgcatatc
     1201 aggtgagcgg tgagtacgcg atgattaagt tcgccgcgct ggcgggtgct atagatgaag
     1261 agaaagtcgt gctcgaaagc ttaggttcaa ttaagcgtgc gggtgcggat ctgattttca
     1321 gctactttgc gctggatttg gctgagaaga agattctgcg ttaatttttt tcctctcaga
     1381 aagggggagt taacctgttg aaagtacggt gaacgccccc tcaccctaac cctctcccca
     1441 agggggcgag ggaaccgtcc gcactcgtat caccccgccc gataaaacgg tttatcccca
     1501 agaatcgtca cccgatgcat aatccgccgc tgtggcaggt aatcggcatt ggcatagtgc
     1561 tgagtcacgc agttatccca aatcgcaata tcattcggtt gccagcgcca acgcacctga
     1621 aactccggtt tagtgatatg ggcgaataaa aagcctaaca aggcttcgct ctctttctcg
     1681 ctgacatcga caattcgcgt agtaaagcct tcattcacaa acagcgcctg tttaccgctc
     1741 accggatgcg ttcgcaccac cggatgtagc aacggaggat ttttcgcgac cgcctcgcgc
     1801 cagcgttgat gttcctcctc ggttttgcgg tatttgtatt ccgggaacga tttacggaaa
     1861 tcatgctccg cacgcagccc gctcagcagc tggcggaagg gaacagagag cgcctcatag
     1921 gccgtaatac cgctggtcca gagcgtatca ccgccggtcg aaggtaattc tttagctgcc
     1981 agaatcgccc ctgcgggtgg cgtttcaata aatgtcacat cggtatgcca gttgtcgtta
     2041 tctggcggat tatcgttatg ggtatccagc acgatgatct cgtcaacccc ttcggcatga
     2101 gggtaaacag ggtgaatatg cagttcgcca aaacgctggg ccagcgcgcg ttgctgctgc
     2161 ggcgtaatgg cttgatcgcg cagaaacacc acctgatggc gcagcaccgc atggtaaagc
     2221 tgttcaaact gattatcgct taacgggcgc gtcaggtcgg cacccgaaat ttgtgcgccg
     2281 atatacggcc ccagcggggt aatgctcaga cgttcactca ttgtacttct ccatgctagg
     2341 gcgtcagacg gcgctgtaac gcgcgcaaac ccagttctaa aagaaaggcg ataatcgcaa
     2401 tcaccgcgat tcccgccagc accacgtcag tcgcgagaaa ttcacccgct gactgaacca
     2461 taaatcctaa accgcgcgtc gcggcaatca gctccgccgc taccagcgta gaccagccca
     2521 cacccagacc aatgcgtaat ccggtgagga tttccggcag cgcgccgggc aaaatgacaa
     2581 accacagcac ctgcgcacgg ctggcaccca gcgactgggc ggcacgaatg cgaacctgct
     2641 gcgcgctttt cacccccgcc agcgccgaca tcgccaccgg tgcaaaaatc gctaaataga
     2701 tcagtaagat cttcgaggtt tcaccaatac caaaccagat caccatcagc ggcaaataag
     2761 ccagcggcga caccggacga taaagttcga ttaccggatc cagaatgccg cgcaccgtcg
     2821 ggcttagccc catggcgatc ccgaccggaa taccgatcac caccgccgcg agtagcgcca
     2881 gcacaatgcg cgtcaggctg gctgccagat gctgccacag cgtggcgtcc ataaatccct
     2941 gcggtccggc aatggtgagc agttttgcca gtacttgttg cggcggcaaa aacagcgggc
     3001 taatcagttg cagcgccgcc accgtccacc atacagtgag taaaaccgct aacgtgccaa
     3061 tgcttaaggt cacctgacgc gagagcggcc agcgccattt cagccgccgc gaatgcagtt
     3121 tttcattaat gagcacactc atgagaacgc ctcccgttgc tcaaatacgc ggcttaaaac
     3181 atattcgcgc atggcgatga attgtggatc ggacttgatg ctgcggctcg actctcccgc
     3241 aacaaagcgg cgagcaaagt tgagcggcag ccgctccagc acacggccag ggccggatga
     3301 aagcagaacc agttcagtcg ccataaacac cgcttcttct atatcgtggg taatcaacag
     3361 cacctgcttg cccgtctcct gccagagttt cagcagcaga gtttgcatct ggtcgcgggt
     3421 gaaggcgtcc agcgcaccaa acggttcgtc gagtaataac agctggggat tcgccgccag
     3481 cgcgcgggca atccccaccc gctgacgttg accaccggaa agctgccaga tatagcgttt
     3541 ttctgcgcct tccagcccca cttttttcag cacctggtgc gcgatttcca gtcgctgcat
     3601 tttctctata cctgccaatt gcaggccgaa cgccacgttg tcctgtacat tgcgccacgg
     3661 tagcagccct tcattctgaa aaaccacccc gcgctctgct cccggtccct caatacgctt
     3721 acccgccagt tgaatgctgc catgctgata aggcacaaaa ccggcaatca gattcagcaa
     3781 cgtggtttta ccgcagccgg acggccccag caccaccagt agctcgccgc tttccagcgt
     3841 caggttgata tcttccagtg ccggtttgcc gccataatcg gcatagagat gagagatttg
     3901 cagcatctgc gcctcctttt attgcacgaa gcgcgaggta acgtactggc tgtaatcatt
     3961 cgctacagcc gggaccttgc cctgctcttt caaaaactgc gcggtgtcga tgattacttt
     4021 gttcaccggt ccggtcagtt ctgccgtttg ttgctgcggc gtcagatagg tattcccctt
     4081 aaccagcccc ggaacgtcac cttccggcac gccgcttaaa cgcgccagtt tgctgatgtt
     4141 ttccggctgt ttcagccacg cgtctgggtt agcaatgtac ggttgctgag catcgatggc
     4201 gcttttagcg aacgctttca cgacctcagg atgtttctcg gcaaaatctt tgcgcaccac
     4261 ccagacgtcc agcgttggcg caccccactg cccgacctgt tcagaatcgg tcaacacctt
     4321 gccgtctttt tccagggcgt taaccgccgg tgcccagaca taagcaccat caatatcacc
     4381 ccgctgccat gcggcgataa tcgcgggcgg ctgcaggttc acaatctcca cttgccctag
     4441 tttaatcccc cagtgtttca gcgccgccag caggctgtag tgggtggtgg agataaacgg
     4501 tacggcaatg cgtttgccaa tcaaatcttc gggtttgctg atagttttct ttaccaccag
     4561 cgcttcggag ttacccagtt ttgacgccag caagaagact tcaatcggca cctgttggct
     4621 ggctgcaacc gctaatgggc tggaaccgag gttgccgatt tgcacgtcgc cagaagccag
     4681 cgcccgcacg atgctggctc cgctgtcaaa cttacgccag tccacgctcg ccccgctctc
     4741 tttagcaaag gtgttgccgg cctgagccac tttcgccggt tcggctgagg tttgatacgc
     4801 cacggtgacg ttcaccgcct gtgcctgaaa agcgatgaat gccagtgcgg caagaagtgt
     4861 gttacgcgat gaaattgcca tgattgtctg ctccccagtc ttgttatggg agcagtattc
     4921 aggaataaaa acattcatta aaagaattag tcgttatcgc a
//
LOCUS       DAJVUY010000221         4925 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.224, whole genome shotgun sequence.
ACCESSION   DAJVUY010000221 DAJVUY010000000
VERSION     DAJVUY010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4925
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.224"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..3332)
                     /gene="sigA"
                     /locus_tag="OQQ72_003923"
     CDS             complement(<1..3332)
                     /gene="sigA"
                     /locus_tag="OQQ72_003923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HCS2013477.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEVGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDLISKYV"
     gene            complement(3693..4697)
                     /locus_tag="OQQ72_003924"
                     /pseudo
     CDS             complement(3693..4697)
                     /locus_tag="OQQ72_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003557916.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
     gene            4694..4925
                     /locus_tag="OQQ72_003925"
                     /pseudo
     CDS             4694..4925
                     /locus_tag="OQQ72_003925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080195.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         1215 a         1090 c         1093 g         1527 t
ORIGIN      
        1 acatacttac taatcaggtc gatataggca ccagagtcaa atatagcgga agcatacaga
       61 cctgccccga cggacttcgt cttgccactg aatgcattac tgctggcatg actgtcggta
      121 tacgtcatag tcagaccagt gaaaaggtca agtccatcca gctcatgttt tttatccaca
      181 ccaatctgca catgggtgta gttgtcactg tatccaccag aagctgaacc tgctccgctc
      241 atgatgcggg cccatgcacc gacctcgcca ttggtgtcac gcagatcccc cattcgttta
      301 ttcaggttgt tgacttctgt caggaaggct ttgtaattac cggacatata cgattttgct
      361 gcactggaag atgctgtatt ttcagccacc ttatatccgg tcagggtcca cgtggtatgt
      421 tcctgatcct ctttcgtgct gatcacagga gatatgttgc tgaaacctat ggcctgagta
      481 ctggctttaa atatctcttt attgcttcct tttggggctg ttatcaggtc aacgtttaat
      541 cctgagttat tatttcccac tttctgtata tcgaccgaca gactgttatt gcttccggtt
      601 aactgatttt taacaatgag tttatccgat tgatttacag actggctcag atcagcccgc
      661 ataatcacag cagtattagt ggcatccagt gtgtttactg tcacagtatg gaaacccgaa
      721 ttctctatgt tactaaacaa caaaagactg tcgcgggttt ttaatgattg cagggctgac
      781 tgtccgttta ctctccataa ggtgttatac atgctggctg aggcagcagg agcatcaata
      841 cctccggtat aagaagtatc aaagccaccc agcaaacctg tagccagcgg tgtgtgtgtg
      901 gttttgtcca ggttatcttc tttatactgg tcaacaccaa acagaataga tgcttttttg
      961 tctgatttta tattaccatt gacccaggca taattttgag cctttaacgt ggcaccatct
     1021 tctgtcatat tatatccatc tgacatatag attgccgggc tgtatttatt attttctgta
     1081 ggggtgcctg ttaatgtcag ggttccggcc agttcaatag ctttatctac atacattttt
     1141 ccctgggcgg taacagtagc tcctttgttg ataatcaggt ctgtattaat taaggataat
     1201 gcaccagtca tagtaacagt tgatttatca ccaacagtta ttttgctgtt ttgagcactc
     1261 agactgccgt tgaaactact ttcgcctgct gaatccccgg agcgaagctg ttgtctgaat
     1321 ccaaaacctt cgccagtaat gtttcttcct gagaacatgt caatgtatgc agttttattt
     1381 cccagaacaa tttgagagtt tttagcctct atgtgtcctt ttacattagc atcccggcct
     1441 atactcaggg ttgcgttttc taaatttaat ttccggaaat taaatttacg actttcccag
     1501 tcgggctggg aaaaagaggc tatctgattg ttggacttat attccgtatt gtaacgttta
     1561 tttacagtgc tttcctggtc ctttatggca gcagaatagt ctttttgaca taaaaaagga
     1621 attggacagt tgttattgcc ttctttaaat atggcatgtt ctgtcgcatg tccttgtaat
     1681 gttaactgtg cattccggac agagatatcg tttttgatat cgactgagcc atcaaagatc
     1741 agattggcat tattgttatg ttgctgggta gtattgataa tatgatttat gcttatatta
     1801 cctgatacat tcccatggta catatatgca tcagtattag taagtgataa tgttgattgc
     1861 ttcacgtttg agttcgttac ggttgttccc gcatctgttg ctgcgatttt ctgaaatgac
     1921 tggtcatagc cgtttagatc cagtgttccg ccatttctgg taaaatagat ttcgccatta
     1981 ccgctttcgc ttaaagcgtc tttggcattt atttttaccg tacctttacc tccggccatg
     2041 taaattttat tgaaggcttt ttcagcacta aggatgacag tcccattacc tattttaagg
     2101 ttatttccct gtgctatttt tacatccaga gtaccactac ctattttatg cagattatct
     2161 ccggcaacgc ccttaacatt ccattcaacg gtggtattat tatcaatatc tatcccggca
     2221 cctttataag acttatcttt tccgtacact ttatatgtct ggttcttatc gaatataagc
     2281 ccgccaatgc caagatcggt atcctgcttg agcgttaatt cccctcctcc tgagacagac
     2341 aggtccttat cttttataat cgatgataac tcttgttttt taccatccag ctgcatagtg
     2401 tttgtgaaat tcttttttaa attgtttacc agaatattat taaataacga gtagtttgtc
     2461 caggctatat tggtactact gataaaacca actgtactgg taacaccatg gaaaacccat
     2521 ttttgttgtt ctttatcata tagataagaa ccagaaccac tatcgccaaa aattggtgag
     2581 tttttaaaag gggttctgtt ggtataaatg taactcttgt ttttccagtc cagattaaaa
     2641 agacttgcgc ttaacaagtc gggattatag ttttgtccaa acagatattg tttgccgttt
     2701 aatatcgttg aggttgttcc ggcacctgct ctgaagccaa ttatttgttc cttaccgttg
     2761 tagtttacgc catatctttt catcgcatct tcgggagaaa gtgagaagtc ggcactctcc
     2821 gtaacccctg ttgtttccac gacgaattta ttcagacgat gaaccgaaaa gtcgccagat
     2881 gatactctgt tacttgcttt atatgctgtc tgatcccatg actgtgttgt tattgcatga
     2941 tgctgtgtac cgttatgagt cgcagtaaca ctgtacgcac ctccaattga tgttgttgca
     3001 cctttgttgg aaacagcaga aaaatcaggt acaggtagtt ctggaaaatg aaatatcttt
     3061 ccatctttca tcattaattg aacatttgtt gcacccggtc tgaactctcc tctgttttga
     3121 gcaaggtcaa gataatcgcg ggtccatata ttatttatat ccagcattgc tgcaaatgct
     3181 gtttcaccat aacttccata tattgaggat aaaataatac cgaggataac tttctttctt
     3241 gatgtaccga cactaacttt ccgggtcagt tcagaaacag caactaatcc acctgtaata
     3301 tgactatatt tcagtgaata aattttattc atacgtgaac tccgatattt ctgagttgtg
     3361 gttatgggat agcatttaat tacaacgggg aactatcagt catggtacgt aactgataag
     3421 ggtataatga taatcactgt cagttatatt tgtatgacag atgtaacaaa atgaaaaaaa
     3481 agataagcac aagtgattga ttggtcagat attgatcacc tggtgtttgt attttgacct
     3541 ttgcgatcaa aatttgatct ttgttgtttc cggtcaatcc tttacaggtt ttctgtatta
     3601 tccgggggag ttaagtctgt cgatgtccga cagacttttg atgatggaaa caacatgcag
     3661 cgataatgtg catgctgttt tgcaggtgga actcagaagg tgaactggaa ctgtgcgacc
     3721 gcaccgtaag tgttgtccgt gccgatcagg cctgcaacat caaggtgaac cacatcaaac
     3781 ggtgagatcc ccaccccggc cgtgaatgca ctgccgtcgt taccggccag attctgacgg
     3841 taaccggcgc gcagctgtgc ccatttccag gcattaaatt ctgcgccaat ggcggcaaac
     3901 tgacggttgc tgtcggaggt gaaaccgctg gccggggtca gatccacatc aaatgcggtg
     3961 gtgaacatcg cgttgtgcca ggagacaccg gccgtcacct gcgggcggat cctgaaggtt
     4021 tccgtgatac cgttcacttc ttttgtctca atactacggg ggatcaggtt ctgtgcgacc
     4081 agtcccagcg tccagttgtc atccaggttc gtactggcac cgatgtcggc gttgatgcca
     4141 tttttcgtgt tgtggtagcg gtcgcctttg aaggcgctgc tgtcataatt tctgaccagc
     4201 acgttgtagt tgaacaggtc gacgcgctgg aatttggggg ggaagcccag agaccatttc
     4261 tgcccggccg tttccagttc cgtagccaga gcaataccca catcagtgat cagtgccgcg
     4321 cgggcaaagg cctgtgatgt caggcggctt ttgtccacct cctgcccggt gctgtttgcc
     4381 acctcttcca ggtaagtgag gtcagcatca gagactttac cgtcgacact gacggtgccg
     4441 tgtgatttaa ccatcagtgc ggcagagagg cgatcaccgg gaagggccgc cacagcagaa
     4501 acgcccagct gtgcggcggc atgtgtgtta cggaagtccc ggaggtgttc tttcaggcgt
     4561 gcggcagcct caggaacacc gtggttactt tcgatggcgc ggtcgaaggc cttccactca
     4621 tcactgatcc ggtcggcgtt gtcggtgata ttatccggat tggagagctg cgcgccgacg
     4681 gacggaagca ggatgctggg ctcatgcgcg acgcaaaatc cacgatgtat atatcagtac
     4741 taaaagcgcg acggcggaag aagctctgaa actaatcggt gaactgtacg ccatagagca
     4801 cgatatacgc gggttaccgg tgtctgaacg cctggcggtc aggcaaatgc agagtagacc
     4861 gctcctgact tccctgtata agctgatgca ggagaaagaa cacacgttat cgaagaaatg
     4921 tcgtc
//
LOCUS       DAJVUY010000222         4853 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.225, whole genome shotgun sequence.
ACCESSION   DAJVUY010000222 DAJVUY010000000
VERSION     DAJVUY010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4853
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.225"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..1250)
                     /locus_tag="OQQ72_003926"
     CDS             complement(<1..1250)
                     /locus_tag="OQQ72_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AGCS family amino acid carrier protein"
                     /protein_id="HCS2013478.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMA"
     gene            1529..2482
                     /gene="tal"
                     /locus_tag="OQQ72_003927"
     CDS             1529..2482
                     /gene="tal"
                     /locus_tag="OQQ72_003927"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS2013479.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            2597..3184
                     /gene="mog"
                     /locus_tag="OQQ72_003928"
     CDS             2597..3184
                     /gene="mog"
                     /locus_tag="OQQ72_003928"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HCS2013480.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSVLTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(3219..3785)
                     /gene="satP"
                     /locus_tag="OQQ72_003929"
     CDS             complement(3219..3785)
                     /gene="satP"
                     /locus_tag="OQQ72_003929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HCS2013481.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="OQQ72_003930"
     CDS             complement(3934..4647)
                     /gene="msyB"
                     /locus_tag="OQQ72_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS2013482.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM
                     RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL
                     KADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKL
                     LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT
                     IPAVLQIACLRRMVSATQV"
     gene            complement(4673..>4853)
                     /locus_tag="OQQ72_003931"
     CDS             complement(4673..>4853)
                     /locus_tag="OQQ72_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS2013483.1"
                     /translation="ARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHT
                     VNSSDMATLKIIGDD"
BASE COUNT         1275 a         1250 c         1230 g         1098 t
ORIGIN      
        1 gccattatga tatctgccag ttgccacatc agcggaaggc ttagcaaggt gccgccgatg
       61 accgttgcga aggtgcagat ccgcaaacac cagatcgctt taggggtgtt caggcgtaaa
      121 aagaagagat tgttttcggc ataaatgtag ttggcaacga tggagctgaa ggcaaacaga
      181 ataaccacga gggtaacaaa ctcagcaccc caggaaccca ttagcacccg catcgccttc
      241 tggataagct gaataccttc cagcggcatg taggttgtgt cgttacccgc cagtaatatc
      301 agcatggcgc ttgccgtaca gatgaccagg gtgtcgataa aaatgccaat catctggaca
      361 atcccttgcg ctgccggatg cggaggccag gacgccgctg ccgctgccgc gtttggcgtc
      421 gaacccattc ccgcctcatt ggaaaacata ctgcgctgaa aaccgttagt aatcgcctgg
      481 cttaaggtat atcccgccgc gccgcctgcc gcttcctgcc agccaaaagc actctcaaaa
      541 atagaccaaa tgacgtgggg aagttgcccg atatttatta cgcaaatcac catgctggtc
      601 agcacccaga ttatcgccat caacgggaca aacccctgca tgagccgggc gacgccatga
      661 agaccgcgag tgattgccag cagagcaaag acagcgagaa taatgcctgt caccagcggg
      721 ggaaaatcaa aagaaaaact cagggctcgg gcaacggcgt tcgcctgaac tccgctgaaa
      781 attatgccgt aggcgatgag caaaaagacg gcgaacagaa cgcccatcca acgcatcccc
      841 agcccgcgcg ccatatacca tgccggtccg ccacgaaact gcccattgac gtcacgttct
      901 ttataaagtt gtgcaaggga acattcggca aacgaggtcg ccatgccgat aaacgcggca
      961 acccacatcc aaaagacggc tctaggtcca ccggcggtaa tagccagcgc aacgccggcc
     1021 aggttgccgc tacccacgcg cgccgcaaga ctggtacaca atgactgaaa tgaggttaaa
     1081 ccgcctggct gtggatgaat gctattttta agacttttgc caaactggcg gatgtagcga
     1141 aactgcacaa atccggtgcg aaaagtgaac caacaacctg cgccgaagag caggtaaatc
     1201 attaccgatc cccaaaggac gctgttaata aaggagaaaa aatctggcat gcatatccct
     1261 cttattgccg gtcgcgatga ctttcctgtg taaacgttac caattgttta agaagtatat
     1321 acgctacgag gtacttgata acttctgcgt agcatacatg aggttttgta taaaaatggc
     1381 gggcgatatc aacgcagtgt cagaaatccg aaacagtctc gcctggcgat aaccgtcttg
     1441 tcggcggttg cgctgacgtt gcgtcgtgat atcatcaggg cagaccggtt acatccccct
     1501 aacaagctgt ttaaagagaa atactatcat gacggacaaa ttgacctccc ttcgtcagta
     1561 caccaccgta gtggccgaca ctggggacat cgcggcaatg aagctgtatc aaccgcagga
     1621 tgccacaacc aacccttctc tcattcttaa cgcagcgcag attccggaat accgtaagtt
     1681 gattgatgat gctgtcgcct gggcgaaaca gcagagcaac gatcgcgcgc agcagatcgt
     1741 ggacgcgacc gacaaactgg cagtaaatat tggtctggaa atcctgaaac tggttccggg
     1801 tcgtatctca actgaagttg atgcgcgtct ttcctatgac accgaagcgt caattgcgaa
     1861 agcaaaacgc ctgatcaaac tctacaacga tgctggtatt agcaacgatc gtattctgat
     1921 caaactggct tctacctggc agggtatccg tgctgcagaa cagctggaaa aagaaggcat
     1981 caactgtaac ctgaccctgc tgttctcctt cgctcaggct cgtgcttgtg cggaagcagg
     2041 cgtgttcctg atctcgccat ttgttggccg tattcttgac tggtacaaag cgaatactga
     2101 taagaaagag tacgctccgg cagaagatcc gggcgtggtt tctgtatctg aaatctacca
     2161 gtactacaaa gagcacggtt atgaaaccgt ggttatgggc gcaagcttcc gtaacatcgg
     2221 cgaaattctg gaactggcag gctgcgaccg tcttaccatc gcacctacac tgctgaaaga
     2281 gctggctgag agcgaagggg ctatcgaacg taaactgtct tacaccggcg aagtgaaagc
     2341 gcgtccggcg cgtatcactg agtccgagtt cctgtggcag cacaaccagg atccaatggc
     2401 agtagataaa ctggcggaag gtatccgtaa gtttgctatt gaccaggaaa aactggaaaa
     2461 aatgatcggc gatctgctgt aatcattctt agcgtgaccg ggaagtcggt cacgctacct
     2521 cttctgaagc ctgtctgtca ctcccttcgc agtgtatcat tctgtttaac gagactgttt
     2581 aaacggaaaa atcttgatga atactttacg tattggctta gtttccatct ctgatcgcgc
     2641 atccagcggc gtttatcagg ataaaggcat ccctgcgctg gaagaatggc tgacatcggt
     2701 gctaaccacg ccgtttgaac tggaaacccg cttaatcccc gatgagcagg cgatcatcga
     2761 gcaaacgttg tgtgagctag tggatgaaat gagttgccat ctggtgctca ccacgggcgg
     2821 aactggcccg gcgcgtcgtg acgtaacgcc cgatgcgacg ctggcagtag cggaccgcga
     2881 gatgcctggc tttggtgaac agatgcgcca gataagcctg cattttgtac caactgcgat
     2941 cctttcgcgt caggttggtg tgattcgcaa acaggcgctg atccttaact tacccggtca
     3001 gccgaagtct attaaagaga cgctggaagg tgtgaaggac gctgcgggta acgttgtggt
     3061 acacggtatt tttgccagcg taccgtactg cattcagttg ctggaagggc catacgttga
     3121 aacggcacca gaagtggttg ctgcattcag accgaagagt gcaagacgcg acgttagcga
     3181 ataaaaaaat ccccccgagc ggggggatct caaaacaatt agtgggattc accaatcggc
     3241 agaacggtgc gaccaaactg ctcgttcagt acttcaccca tcgccagata gattgcactg
     3301 gcaccacaga tcagaccaat ccagccggca aagtggatga ttgcggcgtt accggcaatg
     3361 ttaccgatcg ccagcagggc aaacagcaca gtcaggctaa agaaaacgaa ttgcagaacg
     3421 cgtgcgcctt tcagcgtgcc gaagaacata aacagcgtaa atacgcccca cagacccagg
     3481 tagacaccaa ggaactgtgc atttggcgca tcggtcagac ccagtttcgg catcagcaga
     3541 atcgcaacca gcgtcagcca gaaagaaccg taagaggtga atgcggttaa accgaaagtg
     3601 ttgccttttt tgtactccag cagaccagca aaaatttgcg cgatgccgct gtagaaaatg
     3661 cccatggcaa gaataatacc gtccagagcg aaataaccca cgttgtgcag gttaagcaga
     3721 atggtggtca tgccgaagcc catcaggccc agcggtgccg gattagccaa cttagtgttg
     3781 cccataattc ctcaaaaatc atcatcgaat gaatggtgaa ataatttccc tgaataactg
     3841 tagtgttttc agggcgcggc ataataatca gccagtgggg cagtgtctac gatcttttga
     3901 ggggaaaatg aaaattttcc ccggtttccg gtatcagacc tgagtggcgc taaccatccg
     3961 gcgcaggcag gcgatttgca gtacggctgg aatcgtcacg cgataggcgc tgccgctgac
     4021 cgctttaacc ccatttagtg ccgcacctac agggcctccc agccccgcgc cgcgcagcaa
     4081 accatgccca agtacgctca ttgctgcgtg ggtgcgtaaa atgcgggtca gttggctgga
     4141 aagcaaatgc gacacgcctt ttgccaataa tttgtctttc atcagcagcg gcagcagctc
     4201 ttccagctca ttcaccctcg catcgaacgc gtgcagaaac tcctgcttat gttcctcgtc
     4261 cattttcttc caggtattac gcagaaattg ttccagtaac tgttgctcaa tttcaaacgt
     4321 agacatctct ttgtcggctt tcagcttcaa tcgttttgaa acatcgagca aaatggcccg
     4381 atacaattta ccgtgtccgc gcagtttgtt ggcgatacta tcgccaccaa aatgctgtaa
     4441 ttctccagca atcagctgcc agttgcggcg atgttgctcg ggatgccctt ccatcgattt
     4501 aaacagttcg ttgcgcatca gtacgctgga gaggcgagtt ttgccttttt cattatgggt
     4561 gagcaatcgg gcgaaatttg ccaactgttc ctcactacaa tgctgaagaa aatccagatc
     4621 tgaatcattc aggtaattaa cattcatttt ttgtggcttc tatattctgg cgttagtcgt
     4681 cgccgataat tttcagcgtg gccatatccg atgagttcac cgtatgaccg gaaaaggtga
     4741 tttttgagac gcagcgttta ttgtcgttat cactgttaat gttgatccag tcagtggttt
     4801 gcccttcttt tatttctgaa ggaatattca gactctgact ggcgctacgg gcg
//
LOCUS       DAJVUY010000223         4842 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.226, whole genome shotgun sequence.
ACCESSION   DAJVUY010000223 DAJVUY010000000
VERSION     DAJVUY010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.226"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..237)
                     /locus_tag="OQQ72_003932"
     CDS             complement(<1..237)
                     /locus_tag="OQQ72_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS2013484.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARF"
     gene            495..1274
                     /gene="deoC"
                     /locus_tag="OQQ72_003933"
     CDS             495..1274
                     /gene="deoC"
                     /locus_tag="OQQ72_003933"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HCS2013485.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            1401..2723
                     /gene="deoA"
                     /locus_tag="OQQ72_003934"
     CDS             1401..2723
                     /gene="deoA"
                     /locus_tag="OQQ72_003934"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HCS2013486.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDARALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            2775..3998
                     /gene="deoB"
                     /locus_tag="OQQ72_003935"
     CDS             2775..3998
                     /gene="deoB"
                     /locus_tag="OQQ72_003935"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS2013487.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            4078..4797
                     /gene="deoD"
                     /locus_tag="OQQ72_003936"
     CDS             4078..4797
                     /gene="deoD"
                     /locus_tag="OQQ72_003936"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCS2013488.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
BASE COUNT         1158 a         1242 c         1348 g         1094 t
ORIGIN      
        1 aaaacgggcg taatcgggta agacatagcg cggtttgtac ggcgcatgac cttcaaacat
       61 atcgcagatt acaccctcat ccagcgcgcg gcgggcttcg gcaggaagct gcggataagg
      121 cagattgttt tctgcttcca gagccagaaa atggcgcttc tgctccgggc taagcactgg
      181 gctggtgaca atttgctggc aacgttgttg cagtgcattt tcatgagaag tgggcatctt
      241 cttttccttt tatgccgaag gtgatgcgcc attgtaagaa gtttcgtgat gttcactttg
      301 atcctgatgc gtttgccacc actgacgcat tcatttgaaa gtgaattatt tgaaccagat
      361 cgcattacag tgatgcaaac ttgtaagtag attaccttaa ttgtgatgta tatcgaagtg
      421 tgttgcggag tagatgttag aatactaaca aactcgcaag gtgaatttta ttggcgacaa
      481 gccaggagaa tgaaatgact gatctgaaag caagcagcct gcgtgcactg aaattgatgg
      541 acctgaccac cctgaatgac gacgacaccg acgagaaagt aattgctctg tgtcatcaga
      601 ccaaaactcc ggtcggcaat accgccgcta tctgtatcta tcctcgcttt atcccgattg
      661 ctcgcaaaac gctgaaagag cagggcaccc cggaaatccg aatcgctacg gtaaccaact
      721 tcccacacgg taacgatgac atcgaaatcg cgctggcaga aacccgtgcg gcaatcgcct
      781 acggtgctga tgaagttgac gttgtgttcc cgtaccgcgc gctgatggcg ggtaacgagc
      841 aggttggttt tgacctggtg aaagcctgta aagaggcttg cgcggcagcg aatgtactgc
      901 tgaaagtgat catcgaaacc ggcgaactga aagacgaagc gctgatccgt aaagcgtctg
      961 aaatctccat caaagcgggt gctgacttca tcaaaacctc taccggtaaa gtggcagtga
     1021 acgcgacgcc ggaaagcgcg cgcatcatga tggaagtgat ccgtgatatg ggcgtagaaa
     1081 aaaccgttgg tttcaaaccg gcgggcggcg tgcgtactgc ggaagatgcg cagaaatatc
     1141 tcgccatcgc agatgaactg ttcggtgctg actgggcaga tgcgcgtcac taccgctttg
     1201 gtgcttccag cctgctggca agcctgttga aagcgctggg ccacggtgac ggtaagagcg
     1261 ccagcagcta ctaagcaaga tgctttacgc ctgatgcgct gcgcttatca ggcctacgag
     1321 acgtatctac ccgtaggccg gataaggcgt agacgcatcc ggcaaaagcc gcctcatact
     1381 cttttcctcg ggaggttacc ttgtttctcg cacaagaaat tattcgtaaa aaacgtgatg
     1441 gtcatgcgct gagcgatgaa gaaattcgtt tctttatcaa cggcattcgc gacaacacta
     1501 tctccgaagg gcagattgcc gccctcgcga tgaccatttt cttccacgat atgacaatgc
     1561 ctgagcgtgt ctcgctgacc atggcgatgc gagattcagg aaccgttctc gactggaaaa
     1621 gcctgcatct gaatggcccg attgttgata aacattccac cggcggcgtc ggcgatgtca
     1681 cttcgctgat gttggggccg atggtcgcag cctgcggcgg ctatattccg atgatctccg
     1741 gtcgcggcct cggtcatact ggcggtacgc tcgacaaact ggaatccatc cctggcttcg
     1801 acattttccc ggatgacaac cgtttccgcg aaattattaa agacgtcggc gtggcgatta
     1861 tcggtcagac cagctcactg gctccggcgg ataaacgttt ctacgcgacc cgtgatatta
     1921 ccgcaaccgt ggactccatc ccgctgatca ctgcctcgat cctggcgaag aaactggcgg
     1981 aaggtctgga tgcgctggtg atggacgtga aagtgggtag cggcgcgttt atgccgacct
     2041 acgaactctc tgaagccctt gccgaagcga ttgttggcgt ggctaacggc gctggcgtgc
     2101 gcaccaccgc gctgctcacc gacatgaatc aggtactggc ctccagtgca ggtaacgcgg
     2161 ttgaagttcg tgaagcggtg cagttcctga cgggtgaata tcgtaacccg cgtctgtttg
     2221 atgtcacgat ggcgctgtgc gtggagatgc tgatctccgg caaactggcg aaagatgacg
     2281 ccgaagcgcg cgcgaaattg caggcggtgc tggacaacgg taaagcggca gaagtctttg
     2341 gtcgtatggt agcggcacaa aaaggcccga ccgacttcgt tgagaactac gcgaagtatc
     2401 tgccgacagc gatgctgacg aaagcagtct atgctgatac cgaaggtttt gtcagtgaaa
     2461 tggatgcccg cgcgctgggg atggcagtgg ttgcaatggg cggcggtcgt cgtcaggcat
     2521 ctgacaccat cgattacagc gtcggcttta ctgatatggc gcgtctgggc gaccaagtag
     2581 acggtcagcg tccgctggcg gttatccacg cgaaagacga aaacagctgg caggaagcgg
     2641 cgaaagcggt gaaagcggca attaaacttg ccgataaagc accggaaagc acaccaactg
     2701 tctatcgccg tatcagcgaa taacggtata ctgatctgat catttaaatt tgaagcactg
     2761 agtacggaga acatatgaaa cgtgcattta ttatggtgct ggactcattc ggcatcggcg
     2821 ctacagaaga tgcagaacgc tttggtgacg tcggggctga caccctgggt catatcgcag
     2881 aagcttgtgc caaaggcgaa gctgataacg gtcgtaaagg cccgctcaat ctgccaaatc
     2941 tgacccgtct ggggctggcg aaagcacacg aaggttctac cggtttcatt ccggcgggaa
     3001 tggacggcaa cgctgaagtt atcggcgcgt acgcatgggc gcacgaaatg tcatccggta
     3061 aagatacccc gtctggtcac tgggaaatcg ccggtgtccc ggttctgttt gagtggggat
     3121 acttctccga tcacgaaaac agcttcccgc aagagctgct ggataaactg gtcgaacgcg
     3181 ctaatctgcc gggttacctc ggtaactgcc actcttccgg tacggtcatt ctggatcagc
     3241 tgggcgaaga gcacatgaaa accggcaagc cgattttcta tacctccgct gactccgtgt
     3301 tccagattgc ctgccacgaa gaaacctttg gcctggataa actctacgaa ctgtgcgaaa
     3361 tcgcccgtga agagctgacc aacggcggct acaacatcgg tcgtgttatc gctcgtccgt
     3421 ttatcggtga caaagccggt aacttccagc gtaccggtaa ccgtcacgac ctggctgttg
     3481 agccgccagc accgaccgtg ctgcagaaac tggttgatga aaaacacggt caggtggttt
     3541 ctgtcggtaa aattgcagac atctacgcca actgcggtat caccaagaaa gtgaaagcaa
     3601 ctggcctgga cgcgctgttt gacgccacca tcaaagagat gaaagaagcg ggtgataaca
     3661 ccatcgtctt caccaacttc gttgacttcg actcttcctg gggccaccgt cgcgacgtcg
     3721 ccggttatgc tgcgggtctg gagctgttcg accgccgtct gccggagctg atgtctttgc
     3781 tgcgcgatga cgacatcctg atcctcactg ctgaccacgg ttgtgatccg acctggaccg
     3841 gtactgacca cacgcgtgaa cacattccgg tactggttta cggcccgaaa gtaaaaccgg
     3901 gttcactggg tcaccgtgaa accttcgcgg atatcggcca gactctggca aaatattttg
     3961 gtacttctga tatggaatat ggcaaagcca tgttctgata atgggtgcgg cttgatgccc
     4021 tcaccccggc cctctcccac agggagaggg tgaaaacatg ttgataagga taaaacaatg
     4081 gctaccccac acattaatgc agaaatgggc gatttcgctg acgtagtttt gatgccaggc
     4141 gacccgctgc gtgcgaagta tattgctgaa actttccttg aagatgcccg tgaagtgaac
     4201 aacgttcgcg gtatgctggg cttcaccggt acttacaaag gccgcaaaat ttccgtaatg
     4261 ggtcacggta tgggtatccc gtcctgctcc atctacacca aagaactgat caccgatttc
     4321 ggcgtgaaga aaattatccg cgtgggttcc tgtggcgcag ttctgccgca cgtaaaactg
     4381 cgcgacgtcg ttatcggtat gggtgcctgc accgattcca aagttaaccg catccgtttt
     4441 aaagatcatg actttgccgc tatcgctgac tttgacatgg tgcgtaacgc ggtagacgcg
     4501 gctaaagcac tgggcattga tgctcgcgtt ggtaacctgt tctccgctga cctgttctac
     4561 tctccggacg gcgaaatgtt cgacgtgatg gaaaaatacg gcatcctcgg cgtggaaatg
     4621 gaagcggctg gtatctacgg cgtcgctgca gaatttggcg cgaaagccct gaccatctgt
     4681 accgtgtctg accacatccg cactcacgag cagaccactg ccgctgagcg tcagaccacc
     4741 ttcaacgaca tgatcaaaat cgcactggaa tccgttctgc tgggcgataa agagtaattg
     4801 tgtttcgctg aaaggcgatt gtcgtgtgaa gccggagtgg ga
//
LOCUS       DAJVUY010000224         4820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.227, whole genome shotgun sequence.
ACCESSION   DAJVUY010000224 DAJVUY010000000
VERSION     DAJVUY010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.227"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..4049)
                     /locus_tag="OQQ72_003937"
     CDS             complement(<1..4049)
                     /locus_tag="OQQ72_003937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS2013489.1"
                     /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLAFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNISNLT
                     ETVTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTDAVNGSQLKTTND
                     AVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGNNTASKITNILDG
                     TVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIGETNYYNVGDALA
                     AINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISDSSSDAVNGSQLH
                     GVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDTTLDDALLWDADA
                     GENGAFSAAHGKDKTASVITNVANGAISAASRDAINGSQLYTTNKYIADALDGDAEVN
                     ADGTITAPTYTIANAEYNNVGDALDALDDNALLWDETANGGAGAYNASHDGKASIITN
                     VANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIQENGAGINYVRTN
                     DDGLAFNDASAQGVGATAIGYNSVAKGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIA
                     KGSRDTSITENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQ
                     NAIGAVATTPTKYFHANSTEEDSLAVGTDSLAMGAKTIVNGDKGIGIGYGAYVDANAL
                     NGIAIGSNAQVIHVNSIAIGNGSTTTRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQ
                     ITNVAAGSADTDAVNVGQLKVTDERVAQNT"
     gene            complement(4093..4776)
                     /locus_tag="OQQ72_003938"
     CDS             complement(4093..4776)
                     /locus_tag="OQQ72_003938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS2013490.1"
                     /translation="MNLKKIFFSAVTVSVLCALTGCDYIEEGKPESSLLKQQEEHNNK
                     IDLLEKQQAQLKSQLETIQKQQTGIISSTKTLTHVIKSVKDQQNTFIFTEFNPAKTKY
                     FILNNGSVALAGRVLSIDATENGSVIHISLVNLLSTPISNIGFNATWGGEKPVDAKEF
                     ARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVSPNNLGYLKLAINMENIQFDNLPSA
                     ENRQKRSKK"
BASE COUNT         1097 a         1191 c         1133 g         1399 t
ORIGIN      
        1 gtattttgcg ctacgcgctc atcagtgact ttcaactgac ccacgttaac cgcatcggta
       61 tccgctgaac cagctgcgac gtttgtgatc tgacgttgac catccgcact accgactgag
      121 aattcaccga cagagttctg cggtgcgtcc atgttgtagg cggtataatt ggtttgagcg
      181 ccacgagtgg tcgtagaacc attacctatc gcaatactgt tgacatgaat gacttgcgca
      241 ttgctaccaa tggcaatgcc gttaagtgca ttcgcgtcca cgtaggcacc ataaccgata
      301 ccaatacctt tatcgccatt cacgatggtt ttcgcaccca ttgccagcga gtcagttccc
      361 actgccagtg aatcttcttc cgttgaatta gcgtggaagt atttagtcgg cgtggttgcg
      421 accgcaccaa tcgcattctg caattgacga accgtaacgg cgtcatgggc ttcggaacca
      481 tcggctacgt tgatgatttg acgatattta ccgtcatcac cgatagacaa tgcaccgagc
      541 agttcgccat ccgtggtgtc gtaaccaata acaacgccat tttccgttat gctggtgtca
      601 cgggagcctt tggcaatcac tcggctggaa acagagctgc tacctagggc gatacccgta
      661 tcaacgtcgc tgtagctgcc ctgaccaata gctacgctgc tatcgccttt ggcgacagag
      721 ttataaccta tagctgtagc gccaacaccc tgtgcgctgg cgtcgttgaa cgctaagccg
      781 tcgtcgttag tacgcacata gttaataccc gcaccgtttt cttggatata ggttgcgtcg
      841 gtgttaccag cgagctgatt gataatttgg gtgttctgct caatcatcat attcgtcgca
      901 ttcaactgag aaccgttcac tgcatcggta ctgtcctcac taatactgcc attagcgaca
      961 ttagtgatga tgctggcttt accgtcatgg ctggcattgt aggctccagc accgccattg
     1021 gcagtctcat cccacagcag ggcgttatca tcaagcgcat ccagagcgtc accgacgttg
     1081 ttgtactcgg cgttcgcaat ggtgtaagtc ggtgcggtga tggtgccgtc agcgttgact
     1141 tctgcgtcac catccagcgc atcagcgatg tacttattgg tggtatagag ttgtgagccg
     1201 ttaatcgcgt ctctgctggc agcagagatt gcaccgttag cgacgttagt gattacactg
     1261 gcagttttat cttttccgtg agcggcgcta aatgcaccat tttcaccggc gtccgcatcc
     1321 cagagcagag cgtcgtcaag agtggtatcg atagcattca gggcatcacc gacattatcg
     1381 taatcagcat tagcaatggt gtacgtcggc gcagtgatgg tgccgtctgc attgacttcg
     1441 gcaccacccc ccagcgcatc aacaacataa ctgctcacgc cgtggagttg tgagccgttt
     1501 actgcgtcag aactggagtc tgaaatttca ccatctgcga catcagtgat cacgcttgcg
     1561 tcaccattag taccgtgttt ggcactgaat ttacctgcgg tggcatccca aagcagagca
     1621 tcgccgagag acgtgctaaa tgaggagtta atcgcagcca gtgcatcgcc gacgttataa
     1681 taatttgttt caccgatttt gtaggttgga ccggtaaaca caccgtcagt attcacagaa
     1741 gcattgccgc cgaagtaggt ggcgatattg ctgcttaagt cataaagctg gctaccgtta
     1801 atggcatcgg aactggttgc agtgactgtg ccgtccagga tattggtgat tttgctggcg
     1861 gtattgttgc catgagctgc agtgaagaca ccattgtcct tatcccattt cagcgcatcc
     1921 tcaccaagat tagtcaccgt ctcagtcaga ttagagatgt tggtggtgtt agtggcgata
     1981 ttggtggtat tcgtcgccac ggcatcgttg gtggttttca gctgagagcc gttaacggca
     2041 tcggtgctgc cagtcgtcag gtcgccatct ttaacgttgg tgattttgct ggtggtctcg
     2101 gtgccatgag ctgccgtgaa tacaccattg tccttatccc atttcagcgc atcctcacca
     2161 agattagtca ccgtctcagt cagattagag atgttggtgg tgttagtggc aatattggaa
     2221 gtgttattgg cgatattggt ggtattcgtc gccacagcat cgttggtggt tttcagctga
     2281 gagccgttaa cagcatcagt gctgtcagcc gtcaggtcgg catctttaac gttggtgatt
     2341 ttgctggtgg tatcctggcc gtgagctgca ctgaatgcct ttttagtttc gttccagagc
     2401 agggcatcag cctgaaggtc accaacggaa tccgtcaggt tggtgatatt ggtggtattg
     2461 gtggcaatat ttgccgtatt cgtggcaatg ttgctggtat tagtagcgat attggcggtg
     2521 ttggcttcga catcgtcatt ggtagctttc agttgggaac cgttaaccgc atccttactg
     2581 gaggctgaaa tcgtgccatc cgcaacatcg gtgattacgc tggcagttgg gctactagta
     2641 ccatgagcag cgctgtattt gcctttggtt tggtcccatt gcagggtgtt ttcatcaagt
     2701 acagcgagcg cagcccctac gttatttttg ctaccatttt ttaaattgta ggttggtgct
     2761 gtaacagtac cgtcatcaac atctactgca gcccctcctc caagcctttt tgctaccgag
     2821 tcgctaatgg cataaagctg tgaaccatta atggcatcgt aactgtcaga cttgatcgcg
     2881 ccatttttca cattaacgat cttgcgtttt aatgaactat tgccgacaga gacggtattg
     2941 tctaaatccg caatggaatc tgcgcccagc gcgacagagt taataccgtt ggcactgcta
     3001 ttactaccaa gcgcaagact cttatcacca gttgcattac tggctgtgcc taaggcaatg
     3061 gtgtttaagc ctctcgactg gctaccatta cccagagcga tggcatccac gccatcagct
     3121 ttgttgccct ggcctatggc gattgcatta tctgccagag cctggctgcc atttcctaat
     3181 gcgatagtat tgactttatc ggcaaggctt ccgaacccca ttgccatgct attagtccct
     3241 tttgccttcg cattattgcc aatagcagtt gcattttcag cggcttcggt ctcagcacct
     3301 atcgcaatag cgttcgctgc gctggcaagt gattgtctgc caaatgcgag gctgtcagta
     3361 ccgctagcta cactgctacg ccccagggca attgcgtttt cttcagatgc gacgctactt
     3421 gctcccagcg ccattgaata cgcttttgac gcattggcgg tgtcgccaag agcaatactc
     3481 ataatctcag tagctttagt ggcatttccc agggcaatgg cgtttgctcc ttccgctttg
     3541 gaagagtccc ccatagcaat agacaattta cccaatgctt ttgaataacg gccgagggcc
     3601 attgagtatt ggcccaatga atacgaagag gcacccagtg ctatacttct atcgccttct
     3661 gatattgcac taaccccaaa ggccattgat gcaccaccaa tcgcatgggt ttttgacccg
     3721 atggcagagc tatattggcc ttcagctata gcgtcataac ccacagcagt actggaacca
     3781 ctggtgttca taaaagtatt tgctttcgcc cctttgccta tagcaaccca gccgtcgcca
     3841 gctgatccac taccgtaatc aacaccctga ccgttgtcat tcccggcatt cgccaatgcc
     3901 ccaaacgacg acaacattcc acccgcaacc agcgcagaaa ttaacagctt actgcgccca
     3961 gatttcttgc cacggctttt tgccgtttcg ctggtaacag tataattccc tgtcgcaggg
     4021 ttccagataa ctttaaatat tttgttcatt aatgatgctc gctattcctt gttataagtg
     4081 tactaactgc atttattttt tgcttctttt ctgccgattt tcagcagagg gaagattgtc
     4141 gaactgaata ttttccatgt tgatggctaa cttcagatat cccaggttat tgggcgagac
     4201 acccttcagg gtcaaattaa tgtcttgcca ttgacctggt aataatttca atgtggattt
     4261 cattgatgtg ttgaaaagta attgttgcca ccgggcaaac tctttggcat cgacaggttt
     4321 ttcaccaccc catgtcgcat taaaaccaat atttgagata ggtgtactta ataagttgac
     4381 cagtgaaata tgaataacac tgccattctc tgtggcgtca atggataaca ctcgacccgc
     4441 taaagccacc gaaccattgt tcaggatgaa atacttcgtt tttgctgggt taaactcggt
     4501 aaaaataaaa gtgttttgtt gatctttaac ggatttaatt acgtgagtta aagtctttgt
     4561 actgcttatt atgccagttt gttgtttttg aatagtttcc agttgactct ttagctgtgc
     4621 ttgttgtttt tcaagtagat caattttatt gttatgttct tcttgttgtt tcaataaact
     4681 actttctggc ttgccttctt caatgtagtc acatcccgtt aatgcgcaga gaactgaaac
     4741 agtgacagca ctgaaaaaaa tcttcttcaa gttcatgtaa aaatccttat ttcctccgac
     4801 cagcgatcaa tgccggtaga
//
LOCUS       DAJVUY010000225         4795 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.228, whole genome shotgun sequence.
ACCESSION   DAJVUY010000225 DAJVUY010000000
VERSION     DAJVUY010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4795
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.228"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..801
                     /locus_tag="OQQ72_003939"
     CDS             <1..801
                     /locus_tag="OQQ72_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA family autotransporter adhesin"
                     /protein_id="HCS2013491.1"
                     /translation="QSITNLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVD
                     ANAQGKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNAT
                     DAVNVSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNY
                     AQLKQSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASI
                     GGGTYNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1169..2824
                     /gene="lldP"
                     /locus_tag="OQQ72_003940"
     CDS             1169..2824
                     /gene="lldP"
                     /locus_tag="OQQ72_003940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HCS2013492.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2824..3600
                     /gene="lldR"
                     /locus_tag="OQQ72_003941"
     CDS             2824..3600
                     /gene="lldR"
                     /locus_tag="OQQ72_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HCS2013493.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3597..4787
                     /gene="lldD"
                     /locus_tag="OQQ72_003942"
     CDS             3597..4787
                     /gene="lldD"
                     /locus_tag="OQQ72_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HCS2013494.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1055 a         1273 c         1300 g         1167 t
ORIGIN      
        1 cagagcatta ctaacctgaa caatcaggtc actaatctgg atactcgcgt tactaatatc
       61 gaaaacggta ttggcgacat tgtcaccacc ggtagcacca agtacttcaa gaccaacacc
      121 gatggcgtag atgccaacgc ccagggtaaa gatagcgttg ctattggttc tggttccatt
      181 gctgccgctg acaacagcgt cgcactgggt accggttccg ttgcagagga agaaaataca
      241 atctctgtag gttcttctac taaccaacgc cgtatcacca acgtagctgc cggtgttaat
      301 gccaccgatg cggttaacgt gtcgcagctg aaatcttctg aagcaggcgg cgtgcgctac
      361 gacaccaaag ctgatggttc tatcgactat agcaatatca ccctcggtgg tggcaacggc
      421 agtacgactc gtatcagcaa cgtctccgct ggcgtcaaca acaacgacgc ggtgaactac
      481 gcgcagttga agcaaagcgt gcaggaaacg aagcaataca ccgatcagcg gatggttgag
      541 atggataaca aactgtctaa aactgaaagc aagttgagcg gtggtatcgc ttctgcaatg
      601 gcaatgaccg gtctgccgca ggcttataca ccgggtgcca gcatggcttc tattggtggc
      661 ggtacttaca acggtgaatc ggcagttgct ttaggtgtat cgatggtgag cgccaatggt
      721 cgttgggtct acaaattaca aggtagtacc aatagccagg gtgaatactc cgccgcactc
      781 ggtgccggta ttcagtggta atgatccatt aagttagtgt gactaagggc aaacgccaaa
      841 ttgcctgatg cgttacgcgc atcaggcaag ataaggcgct ccgggtcaac aatctaaggg
      901 caattctctg atgaggattg cccttttctt taccagacat ctccccccac aagaattggc
      961 cctaccaatt cttcgcttat ctgacctctg gttcacaatt ccccaattaa aactcacatc
     1021 aatattgcca atacacaaca tttagttaac cattcattgt cattatccct acacaacaca
     1081 attggcagtg ccacttttac acaacgtgtg acaaggagat gagcaacaga ctcattacac
     1141 gatgtgcgtg gactccagga gacctgcaat gaatctctgg caacaaaact acgatcccgc
     1201 cgggaatatc tggctttcca gtctgatagc atcgcttccc atcctgtttt tcttctttgc
     1261 gctgattaag ctcaaactga aaggatacgt cgccgcctca tggacggtag caatcgccct
     1321 tgccgtggct ttgctgttct ataaaatgcc ggtcgctaac gcgctggcct cggtggttta
     1381 tggcttcttc tatggtttgt ggcccatcgc gtggatcatt attgcagcag tgttcgtcta
     1441 taagatctcg gtgaaaaccg ggcagtttga catcattcgc tcgtctattc tttcgataac
     1501 ccctgaccag cgtctgcaaa tgctgatcgt cggtttctgt ttcggcgctt tccttgaagg
     1561 agccgcaggc tttggcgcac cggtagcaat taccgccgca ttgctggtcg gcctgggttt
     1621 taaaccgctg tacgccgccg gactgtgcct gattgttaac accgcgccag tggcatttgg
     1681 cgcgatgggc attccaatcc tggttgccgg acaagtaaca ggcatcgaca gttttgagat
     1741 tggccagatg gtggggcgtc agctaccgtt tatgaccatt atcgtgctgt tctggatcat
     1801 ggcgattatg gacggctggc gcggtatcaa agagacgtgg cctgcggtcg tggttgcggg
     1861 cggctcgttt gccatcgctc agtaccttag ctccaacttc attgggccgg agctgccgga
     1921 cattatctct tcgctggtat cactgctctg cctgacgctg ttcctcaaac gctggcaacc
     1981 agttcgcgta ttccgcttcg gtgacttggg ggcgtcacag gttgatatga cgctggccca
     2041 caccggttac accgcgggtc aggtgttacg tgcctggaca ccgttcctgt tcctgaccgc
     2101 taccgtaaca ctgtggagca tcccgccgtt taaagccctg ttcgcatcgg gtggtgcgct
     2161 gtatgagtgg gtgatcaaca ttccggtgcc gtacctcgat aaactggttg cccgtatgcc
     2221 accagtggtc agcgaggcta cagcctatgc cgccgtgttt aagtttgact ggttctctgc
     2281 caccggcacc gccattctgt ttgctgcact gctctcgatt gtctggctga agatgaaacc
     2341 gtctgacgct atcagcacct tcggcagcac gctgaaagaa ctggctctac ccatctactc
     2401 catcggcatg gtgctggcgt tcgcctttat ctcgaactat tccggactgt catcaacact
     2461 ggcactggca ctggcgcaca ccggtcatgc attcaccttc ttctcgccgt tcctcggctg
     2521 gctgggggta ttcctgaccg ggtcggatac ctcatctaac gccctgttcg ccgcgctgca
     2581 agccaccgca gcacaacaaa ttggcgtctc tgatctgttg ctggttgccg ccaataccac
     2641 cggtggcgtc accggtaaga tgatctcccc gcaatctatc gctatcgcct gtgcggcggt
     2701 aggcctggtg ggcaaagagt ctgatttgtt ccgctttact gtcaaacaca gcctgatctt
     2761 cacctgtatg gtgggcgtga tcaccacgct tcaggcttat gtcttaacgt ggatgattcc
     2821 ttaatgattg ttttacccag acgcctgtca gacgaggttg ccgatcgtgt gcgggcgctg
     2881 attgatgaaa aaaacctgga agcgggcatg aagttgcccg ctgagcgcca actggcgatg
     2941 caactcggcg tatcacgtaa ttcactacgc gaggcgctgg caaaactagt gagcgaaggc
     3001 gtgctgctca gtcgacgcgg cggcgggacg tttattcgct ggcgtcatga cacatggtcg
     3061 gagcaaaaca tcgtccagcc gctaaaaacg ctgatggccg atgatccgga ttacagtttc
     3121 gatattctgg aagcccgcta cgccattgaa gccagcaccg catggcatgc ggcaatgcgc
     3181 gccacacctg gcgacaaaga aaagattcag ctttgctttg aagcaacgct aagtgaagac
     3241 ccggatatcg cctcacaagc ggacgttcgt tttcatctgg cgattgccga agcctcacat
     3301 aacatcgtgc tgctgcaaac catgcgcggt ttcttcgatg tcctgcaatc ctcagtgaag
     3361 catagccgtc agcggatgta tctggtgcca ccggtttttt cacaactgac cgaacaacat
     3421 caggctgtca ttgacgccat ttttgctggt gatgccgacg gggcgcgtaa agcaatgatg
     3481 gcgcacctta gttttgttca caccaccatg aaacgattcg atgaagatca ggctcgccac
     3541 gcacggatta cccgcctgcc cggtgagcat aatgagcatt cgagggagaa aaacgcatga
     3601 ttatttccgc agccagcgat tatcgcgccg cagcgcaacg cattctgccg ccgttcctgt
     3661 tccactatat ggatggtggt gcatattctg aatacacgct gcgccgcaac gtggaagatt
     3721 tgtcagaagt ggcactgcgc cagcgtattc tgaaaaacat gtccgactta agcctggaaa
     3781 cgacgctgtt taatgagaaa ttgtcgatgc cggtagcact ggcaccggtg ggtttgtgtg
     3841 gcatgtatgc gcgtcgtggc gaagttcagg cagccaaagc ggcggacacg catggcattc
     3901 cgtttactct ctcgacggtt tccgtttgcc cgattgaaga agtcgcgcca gccatcaagc
     3961 gcccaatgtg gttccagctt tatgtactgc gcgatcgcgg ctttatgcgt aacgcgctgg
     4021 agcgagcaaa agcagcgggt tgttcgacgc tggttttcac cgtggatatg ccgacaccgg
     4081 gcgcacgcta ccgtgatgcg cattcaggta tgagcggccc aaatgcggca atgcgccgct
     4141 acttgcaggc ggtgacgcat ccgcaatggg cgtgggatgt gggcctgaac ggtcgtccac
     4201 atgatttagg taatatctca gcttatctcg gcaaaccaac cggactggaa gattacatcg
     4261 gctggctggg gaataacttc gatccgtcca tctcatggaa agaccttgag tggatccgcg
     4321 atttctggga tggcccgatg gtgatcaaag ggatcctcga tccggaagat gcgcgcgatg
     4381 cagtacgttt tggtgctgat ggaattgtgg tttctaacca cggtggccgc cagctggacg
     4441 gtgtactctc ttccgctcgt gcgttgcccg ctattgcaga tgcggtgaaa ggtgatatcg
     4501 ccattctggc ggatagcgga attcgtaacg ggcttgatgt cgtgcgtatg attgcgctcg
     4561 gtgccgacac cgtactgctg ggtcgtgctt tcctgtatgc gctggcaaca gcgggccagg
     4621 cgggtgtagc taacctgcta aatctgatcg aaaaagagat gaaagtggcg atgacgctga
     4681 ctggcgcgaa atcgatcagt gaaattacgc aagattcgct ggtgcaaggg ctgggtaaag
     4741 agttgcctgc ggcactggct cccatggcga aagggaatgc ggcatagtcg tttgc
//
LOCUS       DAJVUY010000226         4708 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.229, whole genome shotgun sequence.
ACCESSION   DAJVUY010000226 DAJVUY010000000
VERSION     DAJVUY010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.229"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..142
                     /locus_tag="OQQ72_003943"
     CDS             <1..142
                     /locus_tag="OQQ72_003943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013495.1"
                     /translation="MPAGHGHMTLEFSVSAWLVNNWYPTASISDLLVVVMKKATAGIS
                     IS"
     gene            210..809
                     /locus_tag="OQQ72_003944"
     CDS             210..809
                     /locus_tag="OQQ72_003944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS2013496.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHARTNAPG
                     SDNLNGINVKYRYEFTDALGLITSFSYANAEDEKKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF"
     gene            874..2281
                     /locus_tag="OQQ72_003945"
                     /pseudo
     CDS             874..2281
                     /locus_tag="OQQ72_003945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422246.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
     gene            2367..2879
                     /locus_tag="OQQ72_003946"
     CDS             2367..2879
                     /locus_tag="OQQ72_003946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013497.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAVNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            2955..3167
                     /locus_tag="OQQ72_003947"
     CDS             2955..3167
                     /locus_tag="OQQ72_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS2013498.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(3309..3633)
                     /locus_tag="OQQ72_003948"
                     /pseudo
     CDS             complement(3309..3633)
                     /locus_tag="OQQ72_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(3769..4017)
                     /locus_tag="OQQ72_003949"
     CDS             complement(3769..4017)
                     /locus_tag="OQQ72_003949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS2013499.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
     gene            complement(4372..>4708)
                     /locus_tag="OQQ72_003950"
     CDS             complement(4372..>4708)
                     /locus_tag="OQQ72_003950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS2013500.1"
                     /translation="VLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGI
                     DTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVR
                     SVEEILHAL"
BASE COUNT         1240 a         1026 c         1321 g         1121 t
ORIGIN      
        1 tatgcctgcc ggtcacggtc acatgacgct ggagttttcg gtatcagcat ggctggtgaa
       61 taactggtat cccacagcaa gtatcagcga tttgctggtt gtggtgatga agaaagccac
      121 cgcaggcatc agtatcagct gaattttata acccatatac gggcgccaga aatggcgcct
      181 tttttattgc agaaaagcga gaggtaatta tgcgtaaagt ttgtgcagcc attttgtccg
      241 cagccatctg tctggctgta tccggtgcgc ctgcatgggc gtctgaacat cagtccacac
      301 tgagcgcggg gtatcttcat gcccgtacga acgctcccgg cagcgataat ctgaacggga
      361 ttaacgtgaa ataccgttat gagtttacgg acgcgctggg gctgattacg tccttcagtt
      421 atgccaatgc tgaagatgag aaaaaaacgc actacagcga tacccgctgg catgaggatt
      481 ccgttcgtaa ccgctggttc agcgtaatgg cggggccgtc tgtgcgcgtg aatgaatggt
      541 tcagcgcgta tgcgatggcg ggtgtggctt acagccgtgt gtcgactttc tccggggatt
      601 atctccgcgt aactgacaac aaggggaaaa cgcacgacgt gctgaccgga agtgatgacg
      661 gtcgccacag caacacgtct ctggcgtggg gggctggcgt gcagtttaac ccgaccgaat
      721 ccgtggccat tgatattgct tatgaaggtt ccggcagtgg cgactggcgc actgacggtt
      781 tcatcgtggg tgtcggctat aaattctgat tagccaggta acacagtgtc atgacagccc
      841 gccggttcag gcgggctttt ttgtggggtg aatatgacag taaagatttc tggtgtactg
      901 aaagacggca caggaaaacc ggtacagaac tgcacaatcc agctgaaagc aaaacgtaac
      961 agtaccacgg tggtggtgaa cacgctggcc tcagaaaatc cggatgaagc cgggcgttac
     1021 agtatggacg ttgagtatgg tcagtacagc gttattctgt tggtggaggg attcccgccg
     1081 tcacatgccg ggactatcac cgtgtatgaa gattctcaac ccggtacgct gaatgatttt
     1141 ctcggtgcca tgactgagga tgatgcccgt ccggaggcac tgcgtagctt tgaactgatg
     1201 gtggaagagg tggtgcgtaa cgcagaggag gcgaagaaga atgccggaga ggcggagacg
     1261 tcagcgagga atgccggcat atcagccagt caggcagaag agagcgctgc aaatgctgac
     1321 acttcagcag gggatgcatc ggagtcagcc cggcaggcgg cagaaagtgc agcctcagca
     1381 aagcagtcag aggaggcgtc ctcgtcctcg gcctctgcgg ccgctcaaaa agccagtgag
     1441 tcattacaaa gtgcaacaga tgctgagttg tcaaaaaaga cggcagaaag tgcagccggt
     1501 aatgcagtca gggatgcaac gaccgcaaca gaaaaagccc gggagtcagc agaaagcgca
     1561 cagtcagcgg aacaaagcag gatagcggcg gaagaggccg taaaccgaat ccccaccgtg
     1621 gtgggacctc ccgggccaaa gggggaaccg gggcccgcgg gtcctcaggg gccgaaggga
     1681 gataaaggag agcgtggcga caccggcccg gcaggggcca aaaggtgaca aaggcgatcc
     1741 gggagtggct ggaccagcag gtccggcagg tgcgccgggg ccgaaaggcg ataaaggtga
     1801 tccgggagta gcaggtccag caggtccggc ggggccacag ggaccgaagg gagacacagg
     1861 agcccccggg caaggaacag aactgcttac tactgccaat acatggactc aggcacaaac
     1921 ttttaatggt ggtattaatg gcaatttgac ggtgaccgga aacggctcat ttaacgatat
     1981 tcagatccgt tcggataaac gcaacaagcg aaatctggta aaactggata atgcgttaga
     2041 tcgtctggag gcacttactg gttatcttta cgagatacag tactctgccg acggttggca
     2101 aacgtcggtt ggtttaattg ctcaggatgc acaaaaagca ttgcctgaac tggtaactga
     2161 agacgcagac gttatatctg gtgaaaaacg tctgcgtctt aactacaacg gcataattgc
     2221 attgttagtc gagggcttta aaacacttcg tcatgagatt aaagaactcc gggagaagta
     2281 aacgacagct gttgtagttt ctggtttcta ctgaatttaa attgtggggt gacactcacc
     2341 ccacgcattc agaaggggga gatgagatgg gggtaacatc gggatgggta ggctcttcgg
     2401 ctaagagcga aacaggtgag cagtggatgg gagccgccgg aaccaaactg ggactgagta
     2461 aaccttttat gatgagccaa atggttgggc gaactatggg ctgtaaaatt gcaactgagt
     2521 actataaatg gaaatcctct gacaaggttg ataactgggg cgcagttggc gctgactggc
     2581 ctttagaaga aaaaagtaaa ggtacaatta caaacgccgc aagctgcgga tcagggaggc
     2641 tggtaggggc tgtcgttaca ctttctcact ttttgacgaa ctctacaccg acagctgctg
     2701 tttatttagc cggtggtaaa gcagttaaca tcaccgtaaa cgtaggtggt gctacacaaa
     2761 ccatgattta tcagggcgtt gttagtgggt tccagtatta ctggtcaggt tctgttagtt
     2821 ccgctttcgt ggaggcaatg aaaaagacgg gagtacccca ggatctaaaa attagttaaa
     2881 tggtaaataa ataattttaa aaacttcacg ttctacatac cggagacgcc ggatatatag
     2941 gatattgttt taagttgcca gagaaatttt tccggacgga tgctgataat aatgatgtgc
     3001 caatgacggc agcatcatgg atggcactga gtgaagcgac agagcaggcg atgtttgcga
     3061 agggagtgga gattaataca cggcagttgc agatgaaagc cgaggttgag gcgctgacag
     3121 acctgaaggc gatccgcagt tatgttgtcg gatggcctgc tggctgaata aaaaaacggg
     3181 accacgacca gtcccggaac catgagtttt agggtattag tttgttatca tagttagcgt
     3241 gctaagtatg ccatgtcagg ttgattagtg aagtgatgtt gttcgcattt ttgcacggcg
     3301 gagaatattc agatttttgg aaatccatat ttttcccgtg cgcgattaca tgcttcattt
     3361 acgatgctat tttcgccgga cattgcgaat tccctgcatg tggacggttt ttgtaaacag
     3421 agcaatatgc gttttctccg ggggggccgg caagagcgcc acatcgggga tttttctgat
     3481 tggtgccgcg catacagcga tgaaaaggag atatttgctc agtgagactg accgaaacct
     3541 ttccgccagc atcgtcagct tctgcccagt aaaaagagac gcggaaaatg cacaacaggc
     3601 accacacgtc atgcatggat tcagattgct cataattcac cagtacagct ataaatcgta
     3661 aagagaacag cggtacatcg tatgtaagaa cgtaccgcgg ctggctggtg aacttccgat
     3721 agtgcgagta ttgaatgatt tccagccgtt accgatttta cgtgctaatt agtgaacaaa
     3781 ccactcgtca gcagactccc aggtatcttt cagagtttcc tgaacaaaag ttttagctga
     3841 atctttatcg gcggtgcgcg taacagaaag gccatcgttg ctggtagctt ttacgatcac
     3901 ctctacatcg tcataacgtt tactgatgcg tcgggttaat tcttccttta acgcatccac
     3961 agcaccggtt ggcattttag tcattttttc tttggctatg cagatttcaa tacgcataaa
     4021 agtccctcta cactgtgttt gtatacagta tcatttttaa ctgtatggat aaacagtatt
     4081 aagggtgaag gaaagtgatt ttttggggca tgcatggggc aaaaatattt gttgtggggc
     4141 attttggggc atgattggga cactttgtta catatgaact ttgccgattt ttatatgaca
     4201 tggaaataca acgctttgat tcttctaaat aaaaaacatg ctcttgggcg ttctttagtg
     4261 atttttaaaa attccgtatc acgcagttaa agtggcgggc atactcttca aggctggtga
     4321 tccccaaccg cacccattta ggatgcgacc attgcggtag accgatgtaa atcataacgc
     4381 gtgaaggatc tcttccacgc tacgcacacg ggcgatgcgc gggtagatat gattaatgct
     4441 gttattgtgt tgctcggcgc tggcggcact acaggcgtct tcggcaatca ccagattaaa
     4501 gccaagttcc caggcattgc gggcggtgga ttcaacaccg atattggtcg agatcccaca
     4561 taacactatt gtatcgatac ctcggcggcg cagttgcaac tccagatccg taccgtaaaa
     4621 cgcaccccac tgacgtttga tgatttcgat atcactgtca gttgcaccta atgcagctgg
     4681 atgttgccac cagttttcgg gcaacact
//
LOCUS       DAJVUY010000227         4696 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.230, whole genome shotgun sequence.
ACCESSION   DAJVUY010000227 DAJVUY010000000
VERSION     DAJVUY010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.230"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            151..267
                     /locus_tag="OQQ72_003951"
     CDS             151..267
                     /locus_tag="OQQ72_003951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS2013501.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
     gene            631..1473
                     /locus_tag="OQQ72_003952"
     CDS             631..1473
                     /locus_tag="OQQ72_003952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS2013502.1"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     gene            1476..2564
                     /gene="capU"
                     /locus_tag="OQQ72_003953"
     CDS             1476..2564
                     /gene="capU"
                     /locus_tag="OQQ72_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HCS2013503.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTQKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            2569..3519
                     /gene="virK"
                     /locus_tag="OQQ72_003954"
     CDS             2569..3519
                     /gene="virK"
                     /locus_tag="OQQ72_003954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HCS2013504.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VASIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSSSGFDREGELMLSLFYNKTVITRLTF
                     SVILTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEAFCALMKACNIS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRLPTQVIRKPLSD
                     IASKKRSEYRKRYALLDYIHETTIRSLDAYPVHSEHQDLN"
     gene            3584..4528
                     /gene="lpxM"
                     /locus_tag="OQQ72_003955"
                     /gene_synonym="msbB"
     CDS             3584..4528
                     /gene="lpxM"
                     /locus_tag="OQQ72_003955"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS2013505.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
BASE COUNT         1348 a          883 c         1073 g         1392 t
ORIGIN      
        1 agttatcggt ggcaatagcc tgtgcaaatt ttttataacc cgggatcgtg tcaggattca
       61 gagtatgata aagacagatt ttcatggctg ccggtttccg tcgtgcaaaa aacatgctga
      121 ttttacgaag gaatgcctta ctgaacaacc ttgcccggaa taccccccga aatcagatgg
      181 aacaatcaga aaaatgctct gcagttatgg aataaagaag gtggggtggt acgccgggag
      241 ggcgatccgc tggaaatggc gcagtagctg caggcctgtc atgatgccgg aatagaagtt
      301 cgtgtacagg ttaatgaaag cgtcaccccg taaataaact ctgcgctgaa attccttttt
      361 ttcattggag cacctgtgtt gttctgaggt gaacatatca cctctgttca ggtagccaaa
      421 ttcagtgtgc cacctcaagg ttcttagtga gtcgttttta aaagatatga taatatatca
      481 ttgtttatga attgttgatg tttaatttag taaaatatat caagtatgcc atgggtttgc
      541 tatgttattc atccagtatc tggaaataaa atgcaccagc tttattgggt tttccttttg
      601 tctctgctta ctaggtgcca gaaactttaa atgttaaacg aagggggcat tttgttcaaa
      661 gccaatcatg ttccggtatt aatgtatcat catgtcagtc attgccccgg actggttaca
      721 ctttctcccg tgacattccg gaagcaaatg aaatggttgg ctgaaaataa ctggaaaaca
      781 ctgtcatcag atgaactgga gtttttttat cggggcggaa aactcccccg gaaaagcgtt
      841 atgttgacat ttgatgatgg ataccttgac aactggtttc aggtatatcc tttattaaaa
      901 gagtttaatc tcaaagcaca tattttttta attaccggtt ttattgggaa tggtccggtt
      961 cgtcactctc ctggaaagga atattctcat cgcgattgcg aacatcaaat agcgacaggg
     1021 aatgctgata atgttatgct tcgctggtct gaagtaaacg aaatgttgca atctggtctg
     1081 gtcgaatttc atgttcatac gcatactcat acacgctggg ataaaaagtt cagttcacga
     1141 gaagaacagt gtaaacatct tcggcaggac ttgttgagtg ggagagaata tttgaaagaa
     1201 atgacaggaa aatgcagtaa acatttgtgt tggccggaag gttattataa taaggattat
     1261 attcaggtcg ctgaagaact tggattctat tatttatata caacagaaag aagaatgaat
     1321 gctcctgcta aaggaactac acggatagga agaataagca ccaaagaacg ggaaagttgc
     1381 gcatggctga aaagacgact tttttattat acaacaccgt ttttttcatc gttgctggcc
     1441 tttcataagg ggccaagatt accggatgat taataatgaa tatactattt acggaatcat
     1501 caccgaatat aggtggtcag gaattacagg ctgttgctca aatgaaggcc ctgaagaaaa
     1561 tggggcattc agttctgctt gtctgcaggg aaaacagcaa aattgctttt gaagccagta
     1621 aattgggaat tgatatcaca ttcgcgttat ttcgaaacag tcttcacatc cctactgcat
     1681 ggagattact cggaatagtt catggttttc agcccaatgc aatcgtttgt cacagtgggc
     1741 atgatagcaa tattgttggt ttagtacggt tattcacttg gaaacatcca ttcagaatta
     1801 tcaggcaaaa gacatatttg acacaaaaaa caaaagtttt ttcaataaat catttttgcg
     1861 atgaggtgat tgttcccgga acaagtatga agacacatct ggagcaggaa ggatgtcgaa
     1921 cccgggttac tgttgtgcct ccaggctttg atttccagaa attatacgtt gattcccgaa
     1981 acagtttgcc tccaaatgtt ctttcttggc tggcgtcccg aaggggatgc cccgttattg
     2041 ctcaggtagg aatgttgcgc ccggaaaaag ggcacgaatt tatgttgaat ttactgttcc
     2101 atttaaaaat gaatggacga cagttctgtt ggttgattgt ggggtctggt tcgcctgaac
     2161 tgcgggagca tttacagtat cagattgaca gtatgggcat gcatgatgat gtttttattg
     2221 ctgacaatgt ttttcctgcc gcccccgtat atcgggttgc cagtctggtg gttctgcctt
     2281 cagaaaacga atcgtttggt atggtactgg cagaagcatc ggcattttct gtgcctgtac
     2341 tggccagtca gattggtgga atccctgatg ttattcagaa caaccagacc gggacattgt
     2401 taccagcagg taataagcac gcatggatgt gcgccctgaa tgattttttt aatgaccctg
     2461 ggcgttttta tcagatggct cgccaggcaa aacaggatat agaagagcgg tttgatatta
     2521 ataaaactgc gttaaaaata ctcacattag cgaagcacaa gtaacaatat gttttctgta
     2581 agtaacttat catttatcgg tttccttaaa aggattgttt tttcctcaga ttcactcccg
     2641 gggaagtggg aacacagaaa attccggttc atgtacattt tgcgatgtgc tataaatccg
     2701 gttgccagta ttcgatatta ttacgaactg cgttccttgc cgtgcattga ggatattctg
     2761 gcaatacacc ccacgttgcc agcaagaatt catcgccctt atttgcataa aggggggcgc
     2821 gcctggaccc gtggacaata tattcttgag cattatcgct ttgtgcaaaa tttgccagaa
     2881 aaatattcta aatttttgtt tccacaaaaa tcggtatcat tagtccaatt catcgggaaa
     2941 gatggagaga attttgatat ccagtgttct tccagtggtt ttgaccggga aggagagttg
     3001 atgttgtcat tgttttacaa taaaacagtt attacccggt taacattttc agtcattctg
     3061 actcaaaatg gacacattgc ttttattggc ggattacagg gagcccctaa aaataccgga
     3121 cctgatgtta ttcggtgcgc aacccgggcc tgttatggga ttttcccaaa acggattatt
     3181 tttgaagcat tttgtgcgtt gatgaaagct tgcaatatct ctgagtgtct ggcagtcagt
     3241 gagcacagtc atgttttccg gcaattgaga tactggtatc agaaacgcaa aacctttgtt
     3301 gcggtctata gtgatttctg ggagtctgta gcaggaaaaa cctgtggtga ctggtacaga
     3361 ttaccaaccc aggtgattcg aaagccgcta agcgatatag ccagtaaaaa acgctctgag
     3421 taccgaaaac gatacgcttt gctggattat atccatgaaa ctactatccg ctctttggat
     3481 gcatatcctg tacactcaga acatcaggat ttaaattaag gtttgatgta ttctctgaat
     3541 aaaacagtaa tgataatttt ggtagaggca ttcgcactaa ataatgaaaa aatataaatc
     3601 tgagtttatt cctgaattta agaaaaatta tctttcccct gtttactggt ctacatggtt
     3661 ccttttggga atgattgcag gtatttcaat gtttccccct tcattcagag atcctgtctt
     3721 ggcaaaaata gggcgttggg cgggcagatt gagcaaaaaa gctcgtcgca gggcgacgat
     3781 taatttatcg ctttgtttcc cagaaaagag tgatacagaa cgggaaataa ttgtcgacaa
     3841 aatgtttgcc acagcattgc aatccatagt gatgatggca gaactggcaa ttcgtggtcc
     3901 ggaaaagttc cagaaacgag tgttctggaa aggcctcgaa attcttgagg aaattcgata
     3961 caataacaga aatgtgattt ttctggttcc ccatggctgg agcgtggata ttcctgcaat
     4021 gttgctggca gctcaggggg aaaaaatggc cgccatgttt catcagcaac gaaatccagt
     4081 gattgattat gtctggaatt ctgtacggcg taaattcggg gggcgcttac attcccggga
     4141 ggatgggata aaaccattta ttcagtcagt acgccaggga tactgggggt attaccttcc
     4201 agatcaggat catggtcctg aatacagtga atttgctgat ttttttgcga cctataaagc
     4261 gacattacca attattggac gtctgatgaa catcagtcag gctatgatta taccgctttt
     4321 cccggtttat gatgaaaaaa aacatttcct gactattgaa gttcggccac caatggatgc
     4381 atgcattgcc agcgcggaca ataaaatgat tgcccgacaa atgaacaaaa cagtggaaat
     4441 tttggtgggg tcacatccgg aacagtatat ctgggtttta aaattgttaa aaacgcgcaa
     4501 atcaaacgaa gcggacccgt acccttgaaa ttataaagta caggtatttc cactagttgt
     4561 ttcttacagg ttaccaatcg aaacacatcc cccttccgtg tgttgcccgt ttggcacgga
     4621 ggactgtgta gatgcagttc gttaaattta atttatgcct aaatagctgc gcttaatacc
     4681 gctacacttt tgccag
//
LOCUS       DAJVUY010000228         4680 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.231, whole genome shotgun sequence.
ACCESSION   DAJVUY010000228 DAJVUY010000000
VERSION     DAJVUY010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.231"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            65..1864
                     /gene="cysJ"
                     /locus_tag="OQQ72_003956"
     CDS             65..1864
                     /gene="cysJ"
                     /locus_tag="OQQ72_003956"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HCS2013506.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDIEAADEFLSELRVERRYQRDVY"
     gene            1864..3576
                     /gene="cysI"
                     /locus_tag="OQQ72_003957"
     CDS             1864..3576
                     /gene="cysI"
                     /locus_tag="OQQ72_003957"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HCS2013507.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPHHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3651..4385
                     /gene="cysH"
                     /locus_tag="OQQ72_003958"
     CDS             3651..4385
                     /gene="cysH"
                     /locus_tag="OQQ72_003958"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS2013508.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGLHEG"
BASE COUNT         1153 a         1221 c         1335 g          971 t
ORIGIN      
        1 tcttctgttt tatgggcgct gacagggcgc agaaacagct ttgcttactg gaacataacg
       61 acgcatgacg acacaggtcc caccttccgc gttgcttccg ttgaacccgg agcaactggc
      121 acgccttcag gcggccacga ccgatttaac gcctacccag cttgcctggg tttctggcta
      181 tttctggggc gtactcaatc agcagcctgc tgcgcttgca gcgacgccag cgccagccgc
      241 agaaatgccg ggtataacta ttatctccgc ctcgcaaacc ggcaatgcgc gccgggttgc
      301 tgaagcatta cgcgatgatt tattagcagc aaaactgaac gttaagctgg tgaacgcggg
      361 cgactataaa ttcaaacaaa tcgccagcga aaaactgctc atcgtagtga cgtcaacgca
      421 aggggaaggg gaaccgccgg aagaagccgt cgcgctgcat aagttcctgt tctccaaaaa
      481 agcgccaaag ctggaaaaca ccgcgtttgc cgtgtttagc ctcggcgata gctcttatga
      541 atttttctgc cagtccggga aagatttcga cagcaagctg gcggaactgg gtggtgaacg
      601 cctgctcgac cgtgtcgatg ccgatgttga ataccaggct gctgccagcg agtggcgcgc
      661 ccgcgtggtt gatgcgctta aatcgcgtgc gcctgtcgcg gcaccttcgc aatccgtcgc
      721 tactggcgcg gtaaatgaaa tccacaccag cccgtacagc aaagacgcgc cgctggtggc
      781 tagcctctct gttaaccaga aaattaccgg gcgtaactct gaaaaagacg ttcgccatat
      841 cgaaattgac ttaggtgact cgggcctgcg ttaccagccg ggtgacgcgc tgggcgtctg
      901 gtatcagaac gatccggcac tggtgaaaga acttgtcgaa ctgctgtggc tgaaaggcga
      961 tgaacctgtc accgtcgagg gcaaaacgtt gcctctgaac gaagcgctac agtggcactt
     1021 cgaactgacc gtcaacaccg ccaacattgt tgagaattac gccacgctta cccgcagcga
     1081 aacactgctg ccgctggtgg gcgataaagc gaagttacag cattacgccg cgacgacgcc
     1141 gattgtcgac atggtgcgtt tctctccggc gcaactggat gccgaagcgc tgattaatct
     1201 gctgcgcccg ctgaccccgc gcctgtattc catcgcctcc tcgcaggcgg aagtcgagaa
     1261 cgaagtacac gtcaccgttg gtgtggtgcg ttacgacgtg gaaggccgag cccgtgccgg
     1321 tggtgcctcc agcttcctcg cggatcgcgt ggaagaagag ggcgaagtcc gcgtatttat
     1381 cgaacataac gataactttc gcctgcccgc taacccggaa accccggtga ttatgattgg
     1441 cccaggcacc ggtattgcgc cgttccgcgc ctttatgcag caacgcgccg ccgacgaagc
     1501 gccaggtaaa aactggctgt tctttggtaa tccgcacttt acggaagact tcctgtacca
     1561 ggtggagtgg cagcgctacg tcaaagatgg cgtgctgaca cgtatcgatc ttgcctggtc
     1621 gcgcgaccaa aaagaaaaag tttacgtaca agacaaactg cgcgaacagg gcgcggagct
     1681 gtggcgctgg atcaatgatg gtgcccacat ttatgtctgc ggcgacgcta atcgcatggc
     1741 gaaagacgtt gagcaggcac ttctggaagt gattgccgaa tttggtggca tggacatcga
     1801 agcggcggat gaatttttaa gtgagctgcg cgtagagcgc cgttatcagc gagatgtcta
     1861 ctaatgagcg aaaaacatcc agggccttta gtggtcgaag gaaaactgac agacgccgag
     1921 cgcatgaagc ttgaaagcaa ctacctgcgc ggcaccattg cggaagattt aaacgacggt
     1981 ctgaccggcg gctttaaggg cgacaacttc ctgctgatcc gcttccacgg catgtatcag
     2041 caggatgacc gcgacatccg cgccgaacgt gctgaacaga agctggagcc gcaccacgcg
     2101 atgctgcttc gctgtcgtct gccgggtggg gtgattacca ctaaacagtg gcaggcgatc
     2161 gacaaatttg ccggtgaaaa caccatctat ggcagcattc gcctgaccaa ccgccagaca
     2221 ttccagttcc acggcattct gaaaaagaac gtcaaaccgg tgcaccagat gctgcactcg
     2281 gtcggtcttg atgcgctggc gacagctaac gacatgaacc gtaacgtact ctgcacctcg
     2341 aacccttacg agtcgcagct gcacgcggaa gcgtacgagt gggcgaagaa gatttctgag
     2401 catctgttgc ctcgtacccg cgcgtatgcg gagatctggc tcgaccagga aaaagtcgcc
     2461 actactgatg aagaaccgat ccttggtcag acctacctgc cgcgtaagtt caaaaccacg
     2521 gtagtgatcc cgccgcagaa cgatatcgat ctgcatgcca acgacatgaa cttcgtggca
     2581 atcgccgaaa acggcaagct ggtaggcttc aacctgctgg tgggcggtgg gctttctatc
     2641 gaacacggca acaagaaaac ctacgcccgc acggcgagcg agtttggcta tctgccgctg
     2701 gagcatacgc tggcggtggc cgaagctgtc gtgacaactc agcgtgactg gggtaaccga
     2761 accgatcgta aaaatgccaa aaccaaatac acgctggagc gcgtgggggt tgagacgttt
     2821 aaagcggaag tggagcgtcg cgcggggatc aaatttgaac cgatccgtcc atatgagttc
     2881 accggacgag gcgatcgtat tggctgggtt aagggcattg atgataactg gcacctgacg
     2941 ctgtttatcg aaaatggtcg catccttgat tatccggggc gtccgctgaa aaccggcctg
     3001 ctggagatcg cgaagatcca caaaggcgat ttccgcatta cggcgaacca gaatctgatc
     3061 atcgccggtg taccggaaag cgagaaagcg aagatcgaga agatcgccaa agagagcggg
     3121 ttaatgaatg ccgtcacgcc gcagcgtgaa aactcgatgg cctgcgtgtc attcccgact
     3181 tgcccgctgg cgatggcgga agcagagcgt ttcctgccgt cttttatcga caacatcgat
     3241 aatttaatgg cgaaacatgg tgtcagcgat gagcatatcg tgatgcgtgt aacaggctgc
     3301 ccgaacggtt gtggtcgcgc gatgctggcg gaagtgggcc tggtgggtaa agcgccgggt
     3361 cgctacaacc tgcatcttgg cggcaaccgc attgggacac gtatcccacg gatgtataaa
     3421 gaaaacatca ccgagccgga aatcctggcg tcgcttgatg aactgatagg gcgctgggcg
     3481 aaagagcgcg aagcgggtga aggcttcggc gactttacgg tgcgtgcggg catcattcgc
     3541 ccggtgctcg atccggcgcg cgatttgtgg gattaaccat cagcccggtc ttgtaggcct
     3601 gataagaacg cgtgagcgtc gcatcaggca aggcaaacag tgaggaatct atgtccaaac
     3661 tcgatctaaa cgccctgaac gaactgccga aggtagatcg cattctggcg ctggcggaaa
     3721 ctaacgccga actggaaaaa ctggacgctg aaggccgcgt agcctgggcg ctggataatc
     3781 tgcccggtga atatgtactt tcttccagct ttggcattca ggcggcggtg agcctgcatc
     3841 tggtgaatca aattcgcccg gatattccgg tgatcctcac cgatacgggt tacttgttcc
     3901 cggaaaccta ccgctttatt gacgagttaa cggacaaact caagctcaac ctgaaagtgt
     3961 accgtgctac cgaaagcgca gcctggcagg aagcacgcta cggaaaactg tgggagcagg
     4021 gcgttgaagg cattgaaaag tacaatgaca tcaacaaagt cgaaccgatg aaccgggctc
     4081 tgaaagaact taacgcgcaa acctggtttg ctggcctgcg ccgtgaacaa tccggcagtc
     4141 gcgccaattt accggtgctg gcaattcagc gtggcgtatt taaagtgctg ccgattatcg
     4201 actgggataa ccgaactatt tatcagtacc tgcaaaaaca tggcctgaaa tatcacccat
     4261 tatgggatga aggatattta tcggtcggtg atacccatac aacccgtaaa tgggaacctg
     4321 gcatgtcgga agaagaaaca cgtttctttg gcttaaaaag ggaatgtgga ttgcacgaag
     4381 ggtaaatatt gccggataaa ttaaacgcct ctgtcagaaa tgatgggggc gtttttattt
     4441 tgcgagcagt attcctgatt ttaaacgtga acgccgctgg aagaattatc aggtatagaa
     4501 tggcgtcggg tgcttgaggc tgtctggcgt taagcattcg cgaggttcca gatggacaaa
     4561 agccccaggc gatatttcta tcaacctgag gccagcgttc gaacccaaac aattcgaatg
     4621 ttagtctctt ctttgcaggg aggcaagaca tgctgacaaa atatgccctt gtggcaatcg
//
LOCUS       DAJVUY010000229         4653 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.232, whole genome shotgun sequence.
ACCESSION   DAJVUY010000229 DAJVUY010000000
VERSION     DAJVUY010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4653
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.232"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..756)
                     /locus_tag="OQQ72_003959"
     CDS             complement(<1..756)
                     /locus_tag="OQQ72_003959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS2013509.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLAVLLS"
     gene            complement(887..2251)
                     /gene="sdaA"
                     /locus_tag="OQQ72_003960"
     CDS             complement(887..2251)
                     /gene="sdaA"
                     /locus_tag="OQQ72_003960"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS2013510.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2435..3013)
                     /locus_tag="OQQ72_003961"
     CDS             complement(2435..3013)
                     /locus_tag="OQQ72_003961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HCS2013511.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVIGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3017..4378)
                     /gene="pabB"
                     /locus_tag="OQQ72_003962"
     CDS             complement(3017..4378)
                     /gene="pabB"
                     /locus_tag="OQQ72_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HCS2013512.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4452..4631
                     /locus_tag="OQQ72_003963"
     CDS             4452..4631
                     /locus_tag="OQQ72_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HCS2013513.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1167 a         1198 c         1209 g         1079 t
ORIGIN      
        1 acttagcagc accgccagcg gtaattgtgt tggaagatag tgccatgcca gcgccgtagc
       61 ccccggacca ttaacgttaa tggtaaaagg aaagcgttgc gaagaaacct gatagttttc
      121 attgtcttca ggttgcggaa gggaatctac cagcccatta ccatagagca aatgccgttt
      181 gtccaccgtc aggctggcgc tactgatttg ctgcagttgt ggttcaagga gcattgccgt
      241 cagtaagtcg atgttaatca tctccatgac cccagcattg ctactgcccg ctgcaggcgt
      301 ccattgaatc aaaaccggac tgcctttaat cagggcacgg tcgatcgtca ggcgtaaaag
      361 tggttgcggt gcaggaagtt cagccagaat gtccacgacg ggcacattgc gataaccaaa
      421 aatgctggag caatagagtg tgccgtcttg caccaggcca atggatcgca cagtttggag
      481 ttttgccgcc tgtttacgta atggcaaatg ggcgacagag cagggcagac caatcagcgg
      541 aagcaagact tcgctacctg cctgtagggg aagcagtact ttatctaatt cctctacagc
      601 gtgattggcg aattgtacta cccgttgttg atttaagtta cgctgtgaaa taaatcgcac
      661 gctcagggtc gaagcgagcg taacgagtgc gcaaatcgta caaacaatca ttcgattacg
      721 tcgataggtt ttaatgatcc gttgtgcttt ttgcatgcgg gccaccctgt aagcgtatgg
      781 cgacaaacgc ctgacgcaac agtggatgtg tagtggggaa tattacagca gacgagaaag
      841 cgggtataaa ttcgcccatc cgttgcagat gggcgagtaa gaagtattag tcacactgga
      901 ctttgattgc cagaccaccg cgtgaggttt cgcggtattt ggcgttcatg tccttaccgg
      961 tttcgtacat cgtttcgatg accttatcca gcgagacgcg cggtgcactg gtgcggcgca
     1021 gagccatccg tgcggcgtta atcgccttca cagaggcaat ggcattacgc tcaatgcacg
     1081 gcacctgaac ctgccctgca accgggtcgc aggttaaacc aaggttgtgt tccatgccaa
     1141 tttccgccgc cacgcaaacc tgttccgggc taccgcccag cagttctgca agacccgcag
     1201 cagccattga acaggcaaca cccacttcgc cctggcaacc aacttccgca ccggaaatag
     1261 aggcgttcat tttatacaat gcaccaatcg cgcccgctgc cataaagtaa cgggtataga
     1321 tgtccgggct gaccgattca ataaagtggt catagtaagc cagcactgcc ggaacgatac
     1381 cgcaggcacc gttggttggc gcagttacca cacgaccacc ggcggcgttt tcttcgttaa
     1441 ctgccagcgc aaacatgttt acccagtcaa tgacattcat cggatcgtta gacagtttat
     1501 cgctggaaac cagcatccgg cgcagggcag acgcacgacg tggcacgcgc agcgggcctg
     1561 gcagtacacc ttcggtgttc atcccgcgat cgatacatgc ctgcatggtt tgccagacat
     1621 gcgcgaaata ctcgtcgatc tctttcttgc tgtgcagcgc cagttcgttc tgcatagcga
     1681 gaccagacag cgaatagccg gtttcattac agtacgcgag cagttcggtg gcagatttga
     1741 acggatacgg cacgctcact tcgttggcag catcctgacc aaagtgttct tcatcgacga
     1801 taaaaccgcc gccgatggaa taataagttt tgctgtagac gacttcatcg ccgttatagg
     1861 cgtggatttg cataccgttt tcatgcagcg gcaggttgcc gttatgaaaa cgcatcccgt
     1921 tgtcgcgcgg gaaatccact tcatgccgtc cctgtgccag cagcagacgt tcgcgctctt
     1981 ctacgtcgcg aataaaaccg ggaatactgt cgatatccac ggtggcaggt tcgttacctg
     2041 caagacccat aataatggcg atatcggtgt ggtggccttt acccgtcagc gacagtgaac
     2101 cataaacgtc cacggcaacg cgagtaacgc tatccagtaa gcctttttcg accagatcat
     2161 cgacgaactg tttacccgcc ttcataggcc ctacggtatg ggaagatgag ggaccaatcc
     2221 ccaccttaaa catgtcgaat agactaatca cgataatact cctgacaagg tgactggact
     2281 tccagtaacg aactaataac agcgcatagt gtaagaggga acgcggcgac tggcttaact
     2341 attcacatga attaaactaa tcaaaaaccg cgatttaact aatattgcga tgattgtctc
     2401 aagtagtgtt ttgtagatgt aaagataagt atagtcaggg tttcacacca atttgcagcg
     2461 ccagctcacg aattatgcct gcggtcattc cccatacaaa atactgttcg taccaggaca
     2521 gccatacccg atgtgaatcg ccacggcggt agatatctaa agggtgataa cgacccagat
     2581 gtaatgcctg ggcgagcggc atttcaaaca ccgccgagac ttcatcttca ctggcgcgat
     2641 acggcagatc gggcgggata atgccgatca ctggggttac ctgatagcca gttacgctat
     2701 cgacgggcgg cagcacgccg ataacttcaa cggcggaagg cggtatagcg acctcttctt
     2761 cagcttcgcg cagcgcggcg gcgataactg atgcgtccgt gtcatcgact gcacctccag
     2821 ggaatgccac ttgtccagcg tgtttacgca gatgaattga acgctgagtc agcaacaacc
     2881 ccggttgcgg tcgacggacg atggggatta acacggcagc ctgacgatga tttagggttt
     2941 cccggttaat ttgcgggcgc aaaagttgaa agcgagataa aaaatcatca agcgtcaggc
     3001 tacggtattc cacgtcttac ttctccagtt ggcgtaatat cttagtaact ttatcaaaag
     3061 tttcctgata ttccgcttct tcctggctat cggcgacaat tccaccgccc gcagagcagt
     3121 atatttgtcc gttaatggca gtcagcgtgc ggatagtaat gctggtatcc atgttgccgc
     3181 aaaagctcaa atagccaatg ctgccgcacc aggcattacg tcgctgcggt tccagttcgt
     3241 cgataatttc catagcccgt actttcggag ccccggttat tgagccacca ggaaaagctg
     3301 cgcgcagcag atcgctggcg tgtaactgtt ctggtagtcg cgccgttata gtgctgacca
     3361 gatgatgcac ggcagggaag ggttccacca cgaagagctc tggtactttt accgaaccgg
     3421 ctacggcaac acgaccgata tcattacgca ttaaatcgac aatcatcaga ttttcggcac
     3481 gatctttcgc tgagttcgcc agtttttctg cttgtttgct atcttcctga ggatcgggca
     3541 ggcgtggtag cgtgccttta atcgggcggg tctggatttc actattatca caaagaataa
     3601 accgctctgg cgaaaggctt aaaattgcac cctgttcaag acgtaaaaaa gcgctaaatg
     3661 gcgcgcggtt ggcctgatta agctgaagga atgcctgcca ttcatcgcca gaataggtcg
     3721 catgaaaacg ctgggcgaga ttcacctgat agcaatcacc gctgtgcaga tattcctgta
     3781 cctggcgaaa tttttcgccg tactgctcgc gggtcatatt ggattgccag tcggaagtga
     3841 gcgtgaaatc ttcctgcggc gagaattgct ggctttccag ccaggcccga cgggcattga
     3901 catcattatg actcagcaaa gaaactgtat gacgctggtg gtcgacaatg agcgcccaat
     3961 cgtagatacc cactgccata tccggcagaa cgatatcttg ttccgcaatt tctggcagtg
     4021 actcaaaacg gcggcccaga tcgtagccaa acaaccccag tgcgccgccc tgaaatggca
     4081 aatcttcgtt atgcgttggg cgaatgtctg cgcgatccag cacctgctgg agcacctgta
     4141 gcgggtcatc agtggtcgtt gtgcgttttt cgctttcact aacaacggtt tctttaccga
     4201 aagtggttaa agtgcaaatc ggctcggcga ccacaatatc aaagcggcta tacggatgat
     4261 cggcatagcc ggagtgtaaa agcatcgccc acggcaggtg gcttaagcgg gagaaataaa
     4321 attcagcggc gtcctgacgc cagggtaaag taatcacagc gggagataac gtcttcatca
     4381 gtcctgactc tactggctat gtgccgggta gcatgaaata attagcgcca acaatttagc
     4441 aggagttaac aatgtttgca ggtttacctt cactcaccca tgaacagcag caaaaagctg
     4501 tcgagcggat ccaggaactg atggcacaag ggatgagcag cggccaggca atcgcgctgg
     4561 tggcagaaga gctgcgtgcc aaccactccg gcgagcgaat cgtggcgcgt tttgaggatg
     4621 aagacgagta acacactaat ccgtatcgat ttc
//
LOCUS       DAJVUY010000230         4585 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.233, whole genome shotgun sequence.
ACCESSION   DAJVUY010000230 DAJVUY010000000
VERSION     DAJVUY010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4585
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.233"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            253..615
                     /gene="queD"
                     /locus_tag="OQQ72_003964"
     CDS             253..615
                     /gene="queD"
                     /locus_tag="OQQ72_003964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708563.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCS2013514.1"
                     /translation="MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV
                     DPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLL
                     SAVMVKETCTAGCIYRGE"
     gene            693..1961
                     /locus_tag="OQQ72_003965"
     CDS             693..1961
                     /locus_tag="OQQ72_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS2013515.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMGMALTGAQAAQTLISACQHREP
                     QNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            1952..2212
                     /locus_tag="OQQ72_003966"
     CDS             1952..2212
                     /locus_tag="OQQ72_003966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS2013516.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERQMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2229..2804
                     /locus_tag="OQQ72_003967"
     CDS             2229..2804
                     /locus_tag="OQQ72_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HCS2013517.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(2952..3812)
                     /locus_tag="OQQ72_003968"
     CDS             complement(2952..3812)
                     /locus_tag="OQQ72_003968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HCS2013518.1"
                     /translation="MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQV
                     LDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHW
                     GNALTATLQTEKRPLCLSLARQAGAAKNATLPSGIQQLNIVPGALPDWLVSTEDLKNV
                     TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISG
                     HLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEA
                     LVTNIHADCQ"
     gene            complement(3809..>4585)
                     /locus_tag="OQQ72_003969"
     CDS             complement(3809..>4585)
                     /locus_tag="OQQ72_003969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HCS2013519.1"
                     /translation="NILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQ
                     AAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEF
                     VARHIAEWQHQNPLDLIITGSQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFIT
                     LEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAM
                     QCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
BASE COUNT         1053 a         1234 c         1166 g         1132 t
ORIGIN      
        1 agataaggtt aacggggtga acggtgtgga ttaaagacgg gatagcgata actaataacc
       61 aaatcgacta acctgtttta gcaatagtct ttaacaacaa aatagattaa ccaacccaat
      121 gaaaaacaaa tgaatttagc caatcattaa gataaatcag cgattttgcg caacaaagtc
      181 gttttagata atgcgaaaaa acagcctttc cggtactcta cggcggtttt atcgtcctgt
      241 agagaaatta tgatgtccac cacgttattt aaagatttca ccttcgaagc cgctcaccgc
      301 ttaccacacg tcccggaagg gcataaatgt ggtcgcctgc acgggcattc ctttatggtg
      361 cgactggaaa ttaccgggga agtcgatccg catacgggct ggattatcga tttcgctgaa
      421 ctaaaagcgg cgtttaagcc aacttatgag cgcctcgatc accattatct caatgatatt
      481 ccaggtctgg aaaacccaac tagcgaagtt ttagcaaaat ggatttggga tcaggttaaa
      541 cccgttgtgc cgctgttaag tgcggtgatg gtaaaagaaa cctgcaccgc tggttgtatc
      601 tatcgcggcg aatgataaga gtgtgtcggc ggtcaatttc ccttaagtaa cgctatgtta
      661 gggtattgtg ttcaggatat ctggggcatg acatggaaga cgactgcgac attattatta
      721 ttggtgccgg tattgcaggc accgcttgcg cgttacgctg cgcgcgagcg ggtttatccg
      781 ttttgttact ggaacgcgct gaaatccccg gcagcaaaaa tctttccggc ggacggttat
      841 atacccatgc actcgcggaa ctcctccctc agtttcatct gaccgcgcct cttgaacgac
      901 gcatcactca cgaaagcctt tccctgttaa cgcccgatgg cgtaacgacg ttttccagct
      961 tacagcccgg cggtgaatcc tggagtgtat tacgtgcacg gttcgatccg tggctggttg
     1021 ccgaagccga aaaagaaggt gtcgaatgta tccccggagc gacggtggat gcactgtatg
     1081 aagaaaacgg cagagtctgt ggcgttattt gtggtgacga tattctccgc gcccgttatg
     1141 tggtgctggc agaaggtgcc aacagcgtcc tggctgaacg tcacgggtta gtgactcgtc
     1201 ctgctggcga agcgatggcg ttggggatca aagaagtgct gtcgctggaa acatccgcta
     1261 ttgaagaacg ttttcatctg gagaataacg aaggcgcagc gttgctgttc agcggcggaa
     1321 tctgtgatga cttacccggc ggcgcatttc tttatactaa tcaacaaacg ctctcgttag
     1381 ggattgtttg cccgctctct tcccttacgc aaagtcgtgt tccggcaagc gagctgctga
     1441 ctcgctttaa agcgcatccg gcagtgcgcc cgcttatcaa aaacacggaa tcactggagt
     1501 atggtgcgca tctggtgcca gaaggtggct tgcacagtat gccggtgcaa tacgccggta
     1561 acggctggca gctggtgggc gatgcgttgc gcagttgcgt caataccgga atttccgtgc
     1621 gcggcatggg tatggcgctg actggcgcgc aggcggcaca aacgctgata agcgcctgcc
     1681 agcaccgcga gccgcaaaat ctgtttgcgc tttatcatca caacgtagag cgcagcctgc
     1741 tatgggatgt tctacaacgt tatcagcatg ttccggcgct tttgcaacgc cctggctggt
     1801 atcgggcgtg gcctgcgtta atgcaggata tttcccgcga tttatgggat cagggtgata
     1861 aacctgttcc accgctgcgc cagttattct ggcgtcattt acgtcgtcat ggcctgtggc
     1921 atctggcggg cgatgttatc aggagtctgc gatgtctgta gcccataatc tctggcgcgt
     1981 tgctgatgcg ccgcacattg ttccggctga ctccgttgag cgtcagatgg tacaatggtt
     2041 gattaacgcc tgtccggcag gtcttttttc gctcacaccg gaaggtgact tacgcgttga
     2101 ttatcacggc tgcctggagt gtggcacctg ccgtttgctg tgcgacgaat ccacactaca
     2161 acagtggcgc tatccgcctt ccggattcgg catcacctac cgctttggat aaataataag
     2221 gataatttat gcccctctta cacctgctcc gccagaatcc ggtgattgct gccgttaaag
     2281 ataatgccag cctgcaactg gcaatcgact ctgaatgcca gtttatttcc gtgttgtacg
     2341 gcaatatctg caccatcagt aatatcgtta aaaagattaa gaacgccggg aaatatgctt
     2401 ttattcatgt tgatttgctg gaaggcgcgt caaataaaga agtcgtgatt cagtttttga
     2461 aactggtgac cgaggcggac ggcattatca gtaccaaagc ctcaatgttg aaagcggcaa
     2521 gagcggaagg ttttttctgt attcatcgcc tgtttattgt tgattcaatt tcgtttcaca
     2581 acattgataa gcaagttgcg caatcgaatc cggattgtat tgagatcctg ccaggctgta
     2641 tgcccaaagt gctgggctgg gtgacagaga aaatccgcca accgctgatt gccggtgggc
     2701 tggtgtgcga tgaagaagat gcgtgtaatg cgattaacgc gggtgtcgtg gcgctttcca
     2761 ccacgaatac cggggtctgg acgttagcga aaaaattact ttgacgggat aatcgtaacc
     2821 aattgaattt ggtttgattt gtaggccgca cgccacatcc gacattcagc gcctgatgcg
     2881 acgcttgacg cgtcttatca ggcctacaag tccccaggcc agaaccgtag gcaggatcat
     2941 ccggcaacac attattggca atctgcgtga atgtttgtca ccagtgcctc cagcaccact
     3001 ttccagtcat caaccacgcc aacatctgcc tgtgaaaata ccgcagcgct ggcgtcatga
     3061 ttaatcgcca ccacaaactt gctattgcgt acgcccgcca ttaacgctgc tgcgccggaa
     3121 gcgccaacaa caatacacac ctcaggtgcc agcaaatgtc cggaaatacc aatcactttt
     3181 tcagcatcaa cgccaccgtt catcactcgc gcccgactgt agcccacttc ggctcccagc
     3241 ttttctgcca gcatagcgat ttcctggtta tctgcctctc cgccctgccc caccaccagc
     3301 acccgtctgg cctcagctaa tgggtcgcga gtaacatttt tcagatcctc tgtgctaacc
     3361 agccagtcgg gaagcgcacc cgggacaatg ttcagttgtt gtattccaga gggcaacgtg
     3421 gcgtttttcg ctgctcccgc ctgacgcgcc agagaaaggc atagcgggcg tttttctgtt
     3481 tgcagcgtcg ccgttagcgc atttccccag tgggatttgc gcacgcttac ggttggaata
     3541 tctaacgaag tcacctggca gatgcttgca ccatgtaaac gccaggccag ccgggtcgac
     3601 agttcatcgc caaacgttcc cggcggaaag agaacaacgt ccgcaggcgt tcgctgccac
     3661 tgttccacca acgcatccag cacctgttcc gccactacag gctgaggttc aatctgccag
     3721 tgcgccaggg tacaaccact gaaatcctgc gccgccagcc agcttgctat tgcggcattc
     3781 tcctgattta ttgtcacaat tgcgatattc atggctgcat cctttggcgt aaatagtcct
     3841 gccatagctt ttgagctttt tctgctaccg tttgcccatc aatcagcgtc gctccgcgtc
     3901 gttgctctgc tcttgccagt tgcagacact gcatcgctgg catttcggca gcaacagttt
     3961 tacggataat ttctgctttc cccgcagcca ttcgctggcg cattcccggt actggcaagg
     4021 ccacttcacc gcactgacgc acggcaatca ccgcaggcaa gcgaacccgg caacaacgca
     4081 acccatgttc agtacgctgt tcgagggtga taaacagcgc gtcgagagtg aaacgctcca
     4141 cctgggtgaa gcaggtccag cccagcattt ccgccagcaa aaatggcgtt tgcccattct
     4201 gcccttcgct gctttggctg ccggtaatta tcagatccag cggattctga tgctgccatt
     4261 cggcaatatg gcgagcgaca aattccggcg caaagcgcag atctgccgcc gtctccagca
     4321 atacagcttc ctcaaaccca agagccatga gatagcgcag ccagtgcaat gcccgttcat
     4381 cccccatgct caacgcggtt aaagacatcg gcgtaccgtt ttttctctgc gccaacagca
     4441 gcgcggcagc ggcctgttca tcagcaccga gtaaacttcg cagtagcgaa atatccggtc
     4501 cgcttttacc ctgagccgcc gcctgccact ctttttccgc cagcattccg gcatccggtt
     4561 cggctttaaa cgctaacaga atgtt
//
LOCUS       DAJVUY010000231         4562 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.234, whole genome shotgun sequence.
ACCESSION   DAJVUY010000231 DAJVUY010000000
VERSION     DAJVUY010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.234"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            101..850
                     /locus_tag="OQQ72_003970"
     CDS             101..850
                     /locus_tag="OQQ72_003970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000093946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS2013520.1"
                     /translation="MSSFLLGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQRMQN
                     RARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQA
                     LVENNHFLSSNHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILE
                     AKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRT
                     GETIRVSRLAEPFWQDHFLGARWILTEETIL"
     gene            1026..1523
                     /gene="rayT"
                     /locus_tag="OQQ72_003971"
     CDS             1026..1523
                     /gene="rayT"
                     /locus_tag="OQQ72_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="REP-associated tyrosine transposase RayT"
                     /protein_id="HCS2013521.1"
                     /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRNAIIKVKR
                     DRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHA
                     IRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAG
                     ERIIL"
     gene            complement(1747..3459)
                     /locus_tag="OQQ72_003972"
                     /pseudo
     CDS             complement(1747..3459)
                     /locus_tag="OQQ72_003972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001140833.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
     gene            3431..4216
                     /gene="lafU"
                     /locus_tag="OQQ72_003973"
     CDS             3431..4216
                     /gene="lafU"
                     /locus_tag="OQQ72_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lateral flagellar export/assembly
                     protein LafU"
                     /protein_id="HCS2013522.1"
                     /translation="MTTIKLIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSH
                     PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSITTIARDAHMEANLEME
                     IVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHIDAMA
                     YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDSKNPQSAGNRRI
                     EIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR"
BASE COUNT         1087 a         1202 c         1194 g         1079 t
ORIGIN      
        1 tgaaacctca atagtaatat gcaaataagc aattaataat cccgtttact cctccggtct
       61 tttaaaattc tcaccttcat tcagccggtt tatgtccttc atgtcttcgt tcttgctcgg
      121 cagatttctg catccaggcg tgttttcgtt atgcgttttg ctccctttac tcgccagcgc
      181 caccacatca catatctctt tcagctacgc cgcccgccag cggatgcaaa accgtgcgcg
      241 tttattaaaa cagtaccaaa cccatctgaa aaaacaggcc agctacattg tggaaggcaa
      301 tgccgaaagc agaagggcgc tacgccagca caaccgggag cagataaaac agcatccaga
      361 atggtttcct gcgccgctca aggcaagtga cagacgctgg caggcgttgg tagaaaacaa
      421 tcatttcctc agcagcaacc acctgcataa tatcaccgaa gtggcgattc accgtctgga
      481 gcaacagctt ggcaagcctt acgtctgggg cggcacgcgg cccgatcaag gcttcgactg
      541 tagcgggttg gttttttatg cctacaacaa gatccttgag gctaagctcc cgcgcacggc
      601 taatgagatg tatcactacc atcgggcaac cattgtggca aataacgacc tgcgccgggg
      661 agatttgctg tttttccata tccacagccg tgaaattgcc gaccatatgg gcgtgtatct
      721 gggagacggt cagtttattg agtcgccgcg cacgggggaa accattcggg taagtcggtt
      781 agctgaacct ttctggcagg atcatttttt gggcgcgcgg tggatattga cggaagagac
      841 gattttgtag gacggataag gcgtttacgc cgcatccggc ggtggtgcgc agatgcctga
      901 tgcgacgctg acgcgtctta tcatgcctac aaatctgtgc gtttttgcga gccgctttcc
      961 tgttattcca tcacctcatt gccgaccttt ccttttcttc ttaccgttga gaaaaaggag
     1021 tcgccatgtc tgaatatcgt cgttattaca tcaagggggg aacctggttt ttcacggtga
     1081 atttacgcaa tcgtcgaagc caactcttga ccacccagta ccagatgctc cgtaacgcca
     1141 ttattaaagt taagcgagac aggccttttg aaatcaacgc ctgggtcgtt ttgccagagc
     1201 atatgcattg catatggaca ttacctgaag gcgatgatga tttttcctct cgctggcggg
     1261 aaattaaaaa gcaatttacc catgcttgtg gattgaaaaa tatctggcaa ccacgttttt
     1321 gggagcacgc catccgcaat accaaagatt ataggcatca tgttgattat atttatataa
     1381 atccagtaaa gcatggttgg gtaaagcaag tgagtgattg gccattctca acgttccatc
     1441 gcgatgtcgc gcgagggtta tatcccatcg attgggcggg ggacgtaacg gatataaatg
     1501 ctggcgagcg tatcatttta taattatgcg cagatgcctg atgcgacgct ggcgcgtctt
     1561 atcatgccta caaacctgtg ccggatcggt aggccggata aggcgtttat gccgcatccg
     1621 gcggttatgc gcagatgcct gatgcgacgc tggcgcgtct tatcatgcct acaaacctgt
     1681 gctggatcgg taggccggat aaggcgttca cgccgcatcc ggcagttgtg caccaatgct
     1741 ggatacttac atcaacgccc ccataatctt caactccagc tcgtccggca cttcgttata
     1801 cgacagcaca tgcagccccg gcgcaaacaa ccttgcataa cgcgccagca aagggcgcag
     1861 ctgcggtggc accagcagca ccgggtcttt ccccgccgct ttcatctgct ctttcacctg
     1921 tggcatcgta ctctggaact ggttgagcat attcgggtcc actggcacgc tgtcgagcat
     1981 cactttaccg ccctgttgcg cctgattcac taggttagtc agcagatttt ccagctcatt
     2041 attcagggta tacaccgtca gctcctgctt gcgaacgaac ggatgggtaa tgctgcgccg
     2101 cagcgccagg cgcacatcgg ctgccagcag aatatgatct ttggtcaccg cgctactggc
     2161 gaccagcacg gtggcgatgg tgacgatatc gcgcagggaa acgccttcgg tcagcagcgc
     2221 ccggtacact ttcagcaact ggctgtaatt gagcaccgcg cttaaatcct ccgccaggcg
     2281 cggtgccatc gacgacaaac ggttatgcaa ctgcgtaata tcgtcatagt taaataaatc
     2341 aggaatatag ctgcgcacaa tcttatttac atgggtagca atcacgctgg cgctgtcgat
     2401 cacctgatac cccatattca gcaccttcgc tttctgcgca ggctggatcc aggtcaccgg
     2461 catcccgtac gccgggtcgt tccccagcac gccgtctatc tcgccgtagg tttcgctgga
     2521 gggctgggcc atcagtttat ccgccggaat atccgcttca tcagccttaa tgccgttgat
     2581 gaaaatagcg tactggctgg gcttaaggcg gaagttttcc cgaatgcgga tctccggcag
     2641 cagcacgccg ttgccgtcgg atatcacctg tcgcacgccg cgaatacgct gggtgagcgg
     2701 gttgccctgg gctttatcga ccagcgccac cagcttgtag ccgaggctta aactgatagg
     2761 ctcgataagc ggaatggttt cccaactgac ctgttgctcg ctggtttcgg tgatggtgcg
     2821 ggtcagcgtt tcgagacttt tctcttccgc ttccgccgcc tgcgggcgtt tgctcatccg
     2881 ccagccggta aagccaagca gggcgctgaa cagcaaaaac ggcagatgtg gcattcccgg
     2941 cactaccgcc agtacgaaca taattccggt agcggtgtag agcaccgatg ggcttgccag
     3001 caactggtta cgcacgtcat gggcgatatc gccgttgtcg ctgacgcggg tgaggataat
     3061 cgccgccgcg gtggagagta gcagggaagg gatttgcgcc accagcccgt cgccgatggt
     3121 catcagcaca tactgctgga aggcggcgtc ggcgctcagg ttgtatttga agatcccgat
     3181 acagacgccg ccgatcaggt tgatcgccag aatcatcatc ccggcgatag catccccgcg
     3241 cacaaatttc gatgccccgt ccatcgcgcc gtagaaatcg gcctcgctgg caacatcttt
     3301 acgtcgggtt tgtgcctgcg cctgattgat caacccggca ttaagatcgg cgtcaatcgc
     3361 catctgctta ccgggcatcg catccagggt aaagcgggct gaaacctcgg aaatacgctc
     3421 ggcccctttg gtgacgacga taaagttgat tgtcaacagc gtcagtaaat ccgagcgtga
     3481 aagcattatc gccgcgctgc acgggcagtc gatttttaac ggtggtgggc tgtcgccgtt
     3541 aaataaaatc agcccgtctc atccgccaaa acctgccacc gtggcggtgc cggaagaaac
     3601 ggagaaaaaa gcgcgcgacg tcaatgagaa aacggcgctg ctgaagaaga aatccgccac
     3661 cgagcttggc gagctggcaa ccagtatcac caccattgcc cgtgatgcgc atatggaagc
     3721 gaatctggag atggagattg ttccccaggg attacgcgtg ctgattaaag acgaccagaa
     3781 tcgcaatatg ttcgaacgcg gcagcgcgca gattatgccg ttctttaaaa cgctgctggt
     3841 ggagctcgcg ccagttttcg actcgctcga taacaaaatt attattaccg ggcatatcga
     3901 tgcgatggct tacaaaaaca atatctacaa caactggaac ctttcgggtg accgcgcgct
     3961 ttcggctcgt cgggtgctgg aagaggccgg aatgccggaa gataaagtga tgcaggtaag
     4021 cgcaatggcg gaccagatgc tgctggattc caaaaatccg caaagcgcgg gcaaccggcg
     4081 cattgagatt atggtgctga ccaaaagtgc gtccgatacg ctgtatcaat actttggtca
     4141 gcatggggat aaagtggtgc agccgctggt gcaaaagctg gataagcagc aggtgctttc
     4201 gcagcgaacg cgttaaatgc tgaatcttta cgcatttctc aaactctgaa atcactgtat
     4261 actttaccag tgttgagagg tgagcaatgc gtaaaatcat gattttcact tcctaaaaca
     4321 ccccttataa tctggtcata gagtcattat agcactggat gaatatacag atgaggaagg
     4381 tttacagtta cattcgcttt tcgtcaacga aacaagcttt tggtgatagt catcgaagac
     4441 agagtaaggc catacaggat tggttagcca gccatccaga ccacatccta gacgaatctc
     4501 ttagttttga agatttagga cgttcagcct ttcacggtga ccatctaaaa gaaggtggag
     4561 ca
//
LOCUS       DAJVUY010000232         4547 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.235, whole genome shotgun sequence.
ACCESSION   DAJVUY010000232 DAJVUY010000000
VERSION     DAJVUY010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4547
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.235"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..526
                     /locus_tag="OQQ72_003974"
     CDS             <1..526
                     /locus_tag="OQQ72_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS2013523.1"
                     /translation="LPWLSEADRRLQIKSALPWWLVCRGEIHKFRCVPHLTGRRFEHG
                     VTDCYTLFRDAYHLAGIDMPDFHREDDWWRNGQNLYLDNMAVTGFYRVPLSSAPPGDI
                     LLCCFGASVPNHATIYCGNGELLHHLPEQLSKRERYSEKWQRRTHSVWRHRHWHASAF
                     TGICNDLAAASACM"
     gene            424..1104
                     /locus_tag="OQQ72_003975"
     CDS             424..1104
                     /locus_tag="OQQ72_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS2013524.1"
                     /translation="MATTNAFCLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRAL
                     SMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHKQLGEGTVIHIVPRLAGAGKGGL
                     QIVLGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKA
                     KTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGK
                     VVVIGRQG"
     gene            1345..>4547
                     /locus_tag="OQQ72_003976"
     CDS             1345..>4547
                     /locus_tag="OQQ72_003976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS2013525.1"
                     /translation="MGKGGGRAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPESFESSGSETVLGVEVTRAKPVTR
                     TITSANIDRLRVTFGVQSLVETTSKGDRNPSSVRLLIQLQRNGNWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIV
                     GMQVDAEQFGGQQMTVNYHIRGRIIQVPSNYDPEKRTYSGIWDGSLKPAYSNNPAWCL
                     WDMLTHPRYGMGKCLGAADVDKWALYAIGQYCDQTVPDGFGGTEPRMTFNAYLAQQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDVVWPYTNSDVVVDDNGVGFRYSFSAL
                     KDRHTAVEVNYTDPQNGWQTSTELVEDPEAILRYGRNLLKMDAFGCTCRGQAHRAGLW
                     VIKTGLLETQTVDFTLGSQGLRHTPGDIIEICDNDYAGTMTGGRVLSIDAATRTLTLD
                     REVTLPETGTSAVNLINGSGKPVSVDITAHPAPDRIQVSTLPDGVETYGVWGLSLPSL
                     RRRLFRCVSVRENTDGTFAITAVQHVPEKEAIVDNGARFEPQSGSLNSVIPPAVQHLT
                     VEVSAADGQYLAQAKWDTPRVVKGVRFSLRLTSGSGEDSRLVTTAITADTEHRFSGLP
                     LGEYTLTVRAINSYGQQGEPATTTFRINAPAKPATIELTPGYFQITAVPRLAVYDPTV
                     QFEFWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIKPGKDFWFYVRSVNLVGKSAF
                     VEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNSQLADEMAEMKTTITETRNEI
                     TQTVSKTLEDQSATIQQIQRVQKDTNDDLAALYMLKVQKTKNGIPYVAGIGAGIEDTD
                     GQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMNDVFLKRLFAVSITSSGNPPT
                     FSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRVLGKLSANQIEGDLVKTVGKA
                     FPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAF"
BASE COUNT         1043 a         1189 c         1415 g          900 t
ORIGIN      
        1 gctgccctgg ctgagcgagg ctgaccggcg gctgcagata aaaagcgcac tgccctggtg
       61 gctggtctgc cggggggaaa ttcataaatt ccgctgtgtg ccacatctga caggacggcg
      121 ctttgagcac ggggtgacgg actgttacac gctgttccgg gatgcatacc atctggcggg
      181 aattgatatg ccggattttc atcgcgagga tgactggtgg cgcaacggcc agaacctgta
      241 cctggacaat atggcggtca ccggctttta ccgggtgccc ctgtcctctg caccgccggg
      301 cgatattctg ctgtgctgct ttggtgcttc ggtaccgaac catgccacca tttactgcgg
      361 caacggtgag ctgcttcacc atctgcctga acaactgagt aaacgggaga ggtattccga
      421 aaaatggcaa cgacgaacgc attctgtctg gcgtcaccgc cactggcacg catctgcctt
      481 cacggggatt tgcaacgatt tggccgccgc ctcagcctgt atgtgaacac ggcagcggaa
      541 gccattcgcg ccctgtcgat gcagatgccg ggctttcgcc gtcagatgaa cgaaggctgg
      601 taccagatac gtattgccgg tgatgacacg gcaccggagg cggtgtatgc ccgtcttcac
      661 aaacagctgg gtgagggaac ggtcatccac attgtgccgc gactggccgg ggccggaaag
      721 ggtggactgc agattgtgtt gggggcggca gccatcgtgg gctctttctt cactgccggg
      781 gcatcaatgg cgttatgggg ttcagccctg gcagccggtg gtttttctgc caccacgatg
      841 ctgttttcac ttggagccag catgattctg ggcggtgtgg cccagatgct ggccccgaag
      901 gcaaaaacac cggattaccg cgcaacggat aacggcagac agaacacgta cttttcctcg
      961 ctggataaca tgattgccca ggggaacccg atgccggtgc cttacgggga aatgctggtt
     1021 ggctcccgcc gtatatccca ggacatcagc acccgtgatg aaggcggggg cggaaaggtc
     1081 gtggttatcg ggcgacaggg ataaaacata aaaaaatccc gcagtgatcg cggagctgcg
     1141 gggacagaca aatgaagatc aatgtgaagg agttgttttt gttactcggg caaaaaaaca
     1201 ctaacgcagc gaaattataa gcgccacagt cagtgtgtga aaatgtgaag atattcagaa
     1261 attttattcc gtcatgacgc aggcacccgg tgaggtgcct gttgtttttg tgagtgaaca
     1321 attatcacgg taagaggtga tgtaatgggc aaaggtggcg gcagggcgca cacaccgcgt
     1381 gaggcgaaag acaatctcaa atccacgcag atgatgagcg tgattgatgc gattggtgag
     1441 ggaccgatag aaggcccggt gaaaggcctg cagagtattc tggtgaacaa aaccccgctg
     1501 acggacacgg acggtaatcc cgtgatacac ggtgtgaccg cggtctggcg tgccggggag
     1561 caggagcaga caccaccgga aagctttgag tcctccggct ctgaaactgt actgggtgtc
     1621 gaagtgacca gggcaaaacc ggtaacacgc accattacgt cagcgaacat tgaccgcctg
     1681 cgggtgacct tcggggtgca gtcactggtg gagaccacgt caaagggtga ccgtaatccg
     1741 tcctctgtcc gtctgctgat tcagttacag cgtaacggta actgggtgac agaaaaggat
     1801 gtcaccatta acggcaagac cacctcacag ttccttgcgt cggtgattct ggataatctg
     1861 cctccccgcc cctttaacat ccggatggtc agggagacgg cggacagcac cacggaccag
     1921 ctgcagaaca gaacgctgtg gtcgtcatac accgaaatca tcgatgtgaa acagtgctac
     1981 ccgaacacgg ccattgtggg gatgcaggtg gatgcggagc agtttggtgg tcagcagatg
     2041 acggtgaact accatatccg cggtcgcatc atccaggtgc cgtcaaacta tgacccggaa
     2101 aaacgcacgt acagtggtat ctgggacggc agtctgaaac cggcatacag caacaacccg
     2161 gcctggtgcc tgtgggacat gctgactcac ccgcgctacg gcatgggaaa atgtctgggg
     2221 gcggcggatg tggacaagtg ggcgctgtat gccatcgggc agtactgcga ccagacggtc
     2281 ccggatggtt tcggggggac cgagccgcgg atgaccttta atgcgtacct ggcacaacag
     2341 cgtaaggcgt gggacgttct cagtgatttc tgctctgcga tgcgctgtat gccggtatgg
     2401 aacggtcaga cgctgacgtt cgttcaggac cgcccgtcgg atgtggtgtg gccgtacacc
     2461 aacagcgatg tggtggtgga tgataacggc gtgggattcc gctacagctt cagtgccctg
     2521 aaggaccggc acacggcggt ggaggtgaat tacaccgacc cgcagaacgg ctggcagacc
     2581 tccacggaac tggtggaaga cccggaagcc atactgcgct acggacgcaa cctgctgaag
     2641 atggatgcgt ttggctgtac ctgccgcggt caggctcacc gtgcaggtct gtgggtgata
     2701 aagaccggac tgctggaaac gcagacggtg gacttcacgc tcgggtcaca ggggctgcgt
     2761 cacacaccgg gtgacattat tgaaatctgt gataacgact atgctgggac tatgaccggc
     2821 ggacgtgtcc tgtccattga tgctgccacc cgcaccctga cgctggaccg tgaggttacc
     2881 ctgccggaga caggtacatc ggcggtgaac ctgattaacg gcagtggtaa gccggtgagt
     2941 gtggacatca ccgcacaccc cgcgccggac cggatacagg tcagtaccct gcctgatggt
     3001 gtggagacat acggggtgtg gggactctcc ctgccgtcac tgcgccgtcg cctgttccgc
     3061 tgtgtctccg tccgggaaaa cacggatggc acctttgcca tcacggcggt gcagcacgta
     3121 ccggaaaaag aagccatcgt ggataacggt gcccgctttg agccgcagtc aggctccctg
     3181 aacagcgtca tcccaccggc agtgcagcac ctgacggtgg aggtgagcgc agctgacggc
     3241 cagtatctgg cacaggcgaa atgggacacg ccgcgggtgg tgaagggggt gcgcttcagt
     3301 ctgcgactga ccagcggaag cggagaagac agccgtctgg tgaccaccgc tatcactgcg
     3361 gatacagagc atcgtttcag tggtctgccg ctcggggaat acaccctgac agtcagggca
     3421 attaacagtt atggccagca gggcgaaccg gccaccacca ccttccggat taacgcgcca
     3481 gcaaaacccg ccaccattga actgacgccg gggtattttc agataacagc ggtaccgcgt
     3541 cttgcggtgt atgacccgac ggtacagttt gagttctggt tttcggaggc aaaaatcgca
     3601 gacacatctc aggtggaaac ctctgcccgt tatctgggga ccggcagtca gtggagtgta
     3661 tccggcccgc acattaagcc cgggaaggat ttctggtttt acgtgcgcag cgtcaacctg
     3721 gtggggaaat ctgcttttgt ggaggccagt ggacgggcca gcaatgatgc agaagggtat
     3781 ctggggctgt ttcgggaaaa aataggaaaa ctgcatctgg ctcaggggct gtgggagctg
     3841 atagacaaca gccagcttgc ggatgagatg gcggagatga agaccaccat caccgaaacc
     3901 cgcaatgaaa tcacacagac ggtcagtaaa acgctggagg accagagcgc caccatacag
     3961 cagatacagc gcgtgcagaa ggacacaaat gatgaccttg ctgcacttta catgctgaag
     4021 gtacagaaaa caaaaaatgg cataccctat gttgccggta ttggagcggg gattgaggat
     4081 actgatggcc agcccctgag caacatactg ctgctggctg accgtattgc gatgattaac
     4141 ccggaggacg gcaacaccac gccgttattt gtggcgcagg ggaatcagtt gttcatgaac
     4201 gatgtgttcc tgaagcggct gtttgcggtg agtatcacct cgtccggcaa tcccccgacg
     4261 ttttccctga cgccggaggg caggctgacc gcaagaaatg ctgatatcag cggtaacgtg
     4321 aatgcgaact ccgggacgct caacaacgtc acgattaacg agaactgccg ggttctggga
     4381 aaactgtccg cgaaccagat tgaaggcgat ctcgttaaaa cagtgggtaa ggcttttccg
     4441 cgggactccc gggcaccgga gcggtggcca tcagggaccg ttaccgtcag gatttatgac
     4501 gatcagcctt ttgaccggca aattgttatt ccggcggtgg cattcag
//
LOCUS       DAJVUY010000233         4429 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.236, whole genome shotgun sequence.
ACCESSION   DAJVUY010000233 DAJVUY010000000
VERSION     DAJVUY010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.236"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            127..456
                     /locus_tag="OQQ72_003977"
     CDS             127..456
                     /locus_tag="OQQ72_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS2013526.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            704..949
                     /gene="nrdH"
                     /locus_tag="OQQ72_003978"
     CDS             704..949
                     /gene="nrdH"
                     /locus_tag="OQQ72_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HCS2013527.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ72_003979"
     CDS             946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ72_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HCS2013528.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ72_003980"
     CDS             1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ72_003980"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HCS2013529.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAYAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3483..4397
                     /gene="nrdF"
                     /locus_tag="OQQ72_003981"
     CDS             3483..4397
                     /gene="nrdF"
                     /locus_tag="OQQ72_003981"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HCS2013530.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYSDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSRIGN"
BASE COUNT         1093 a         1133 c         1130 g         1073 t
ORIGIN      
        1 cgggcctacc ttacctgatt gcgcattcac aacgctttca gaaaagtcca taaagccgcg
       61 atgaacctca gttaagaaaa ttatggtcta cactgaaaat tacatcgaat tctaatgggg
      121 gatcatatgt ttaaccgacc gaaccgcaac gacgttgatg atggcgtgca ggatatccag
      181 aatgatgtca atcaattagc tgacagcctc gaatctgtat tgaagtcctg gggcagcgac
      241 gccaaagggg aagctgaagc cgcacgcagt aaagctcagg cgttgctgaa agaaaccagg
      301 gcgcgaatgc atggtcgtac tcgcgtccag caagccgcgc gcgatgccgt tggctgcgcg
      361 gattcttttg ttcgtgaaag accctggtgt agcgtgggta cagcagctgc ggtaggtatt
      421 tttatcggcg cactgttaag catgcgcaaa tcgtagtgca aaaatgataa taaatacgcg
      481 tctttgaccc cgaagcctgt cttcggggtt tctttttgcc tggtgaatca caaaaatccc
      541 cctcccccgt cacgctcata tccagggtaa tttcgatcac tatttgctat atattgtgta
      601 gttgaatctt tttccaacta catctagtat ctctgtatca acagagagac aacccgacgc
      661 gtatcatcgc gccgtatctt cattttaaac ggaaatacga atcatgcgca taactattta
      721 cactcgtaac gattgcgttc agtgccacgc caccaaacgg gcgatggaaa accgggggtt
      781 tgattttgaa atgattaatg tcgatcgcgt tcctgaagca gcggaagcgt tgcgtgctca
      841 gggctttcgt cagttgccgg tagtgattgc tggcgatctt agctggtctg gtttccgtcc
      901 ggacatgatt aaccgtctgc atccagcgcc acacgcggcc agtgcatgag ccagctcgtc
      961 tacttctcca gcagctccga aaacacgcag cgttttatcg aacgtttagg tctgcccgcg
     1021 gtgcgcatcc cgctcaatga gcgggaacgg attcaggtag acgagcctta catcctgatc
     1081 gtgccctctt acggcggcgg cggtacggct ggcgcggtgc cacgacaggt aattcgcttt
     1141 ttaaacgacg agcacaaccg ggcgttgctt cgcggcgtta ttgcttctgg taatcgcaac
     1201 tttggtgagg cgtatggccg cgccggagat gtgattgccc ggaaatgcgg cgtgccgtgg
     1261 ctgtaccgtt ttgaactcat gggtacgcaa agcgatatcg aaaacgttcg taaaggagta
     1321 accgaatttt ggcaacgaca accgcagaat gcctgacgca ggaaacgatg gattaccacg
     1381 cgctgaatgc gatgcttaac ctctacgata gcgcaggtcg cattcagttc gataaagacc
     1441 gccaggccgt tgacgccttt atggcgacgc atgtgcgtcc gaacagtgtg accttcagta
     1501 gccagcagca gcgcctgaac tggctggtca acgaaggtta ctatgatgaa agcgttctta
     1561 atcgctactc tcgcgacttt gtcattacgc tgtttgccta cgcacacacc agcggttttc
     1621 gtttccagac attcctcggg gcatggaagt tttacaccag ctatacgttg aagacattcg
     1681 acggtaaacg ttatctggaa gattttgccg atcgagtcac gatggtggcg ctgacgctgg
     1741 cacaaggcga tgcgacgctg gcgttgcaac tgaccgatga aatgctgtca ggacgctttc
     1801 agccagccac tccgacattc ctcaactgcg gtaagcagca gcgcggcgaa ctggtttcct
     1861 gttttctgct gcgtattgaa gacaatatgg agtcgattgg ccgggcggta aattccgcac
     1921 tgcaactgtc gaaacgcggc ggcggcgtgg catttttgct gtcgaatctg cgagaagcgg
     1981 gcgcgccaat taaacgtatt gaaaatcaat cttctggcgt aattccggtg atgaaaatgc
     2041 tggaagacgc attttcctat gccaaccaac tcggcgcgcg tcagggggca ggtgcagtct
     2101 atttacatgc tcatcatccc gatattctgc gttttctcga tacaaaacgg gaaaatgccg
     2161 acgaaaaaat ccgcattaaa acactgtcgc tgggcgtggt gatcccggat atcactttcc
     2221 atctggcaaa agagaatgcg cagatggcgc tgttttcgcc ctatgacgtt gagcgagttt
     2281 atggcaagcc gtttgccgat atcgccatca gcgaacacta tgacgaactg gttgccgatg
     2341 aacgcatccg caaaaaatac ctcaacgccc gtgatttctt ccagcggctg gcagaaatcc
     2401 agtttgagtc cggctatccc tacatcatgt atgaagacac ggtaaaccgt gctaaccctg
     2461 tcgccgggcg cataaatatg agtaatctct gctcagagat tttgcaggtc aactgtgcct
     2521 cagagtatga cgagaatctc gactatgccc gcacaggcca tgatatctcc tgcaatttag
     2581 gttcgttgaa tattgcgcac accatggatt cccccgattt tgcccgcacg gtagagactg
     2641 ccgtgcgcgg tttaacggcg gtgtcagata tgagtcatat ccgcagcgtg ccgtccatcg
     2701 aagccggaaa tgccgcctca cacgccatcg gactggggca gatgaattta cacggctatc
     2761 tggcgcgaga aggcatcgct tatggttcgc cggaagcact ggatttcacc aatctctatt
     2821 tctatgccat cacctggcac gcactgcgta cctcgatgtt gctggcgcgc gaacgcggtg
     2881 aaaccttcgc cgggttcaaa cagtcacgtt atgccagtgg tgaatatttt agccaatatc
     2941 tgcaaggtaa ctggcagccg aaaacggcga aagttggcga actgtttgcc cgcagcggta
     3001 ttacgttacc tacccgtgag atgtgggcgc aactgcgcga cgacgtgatg cgctacggca
     3061 tttataacca gaatcttcag gcggtgccgc caaccggttc tatctcttat atcaaccatg
     3121 ctacgtcgag tattcatccg attgtggcga aagtagagat acgcaaagag ggcaaaacag
     3181 gacgcgttta ctaccctgcc ccgtttatga ctaacgagaa tctggcgctg tatcaggatg
     3241 cttacgaaat cggcgcagaa aagatcatcg acacctacgc cgaagcgact cgccatgtcg
     3301 atcaggggct gtcgctgacg ctgtttttcc ccgataccgc caccactcgc gatatcaaca
     3361 aagcgcagat ttacgcctgg cgcaagggta tcaaaacgct ctattacatt cgcctgcgtc
     3421 agatggcgct ggaaggcact gaaattgaag gctgcgtctc ctgtgcactt taaggaatat
     3481 ctatgaaact ctcacgtatc agcgccatca actggaacaa gatatctgac gataaagatc
     3541 tggaggtgtg gaatcgcctg accagcaatt tctggctacc agaaaaggtg ccgctgtcga
     3601 acgatattcc tgcctggcag acattaactg tcgtagaaca acaactgacg atgcgcgttt
     3661 ttactggcct gacgctgctc gacacgctgc aaaatgttat cggcgcgcct tcgctgatgc
     3721 cctatgcact cacgcctcat gaagaagcgg tattatcgaa tatcagcttt atggaagcgg
     3781 ttcatgcccg ctcttacagt tcgattttct cgacgctgtg tcagaccaaa gatgtcgatg
     3841 ccgcctacgc ctggagtgaa gaaaacgcac cgttgcagcg aaaagctcag attattcagc
     3901 aacattatcg cggtgatgat ccgctgaaaa agaaaatcgc cagtgtgttt cttgaatctt
     3961 ttttgttcta ttccggtttc tggctgccga tgtatttttc cagccgcgga aagctgacca
     4021 ataccgcaga tctgatccgt ctgattatcc gcgatgaagc agtccacggt tactacatag
     4081 gctataaata tcagaaaaac atggaaaaga tatctctggg acaacgtgaa gagttgaaga
     4141 gtttcgcctt cgatttgttg ctggaactct acgacaacga gttgcaatac agcgatgagc
     4201 tgtacgccga aaccccgtgg gctgacgatg tgaaagcgtt tctctgttac aacgccaata
     4261 aggctttgat gaatctgggc tacgaaccgt tatttcccgc agaaatggcg gaagtgaatc
     4321 cggcaatcct cgccgcgctt tcgccgaatg ccgatgaaaa tcacgatttc ttttccggtt
     4381 cacgtatagg aaattgaaaa actaagcgat acccctgtcc gcgccttat
//
LOCUS       DAJVUY010000234         4426 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.237, whole genome shotgun sequence.
ACCESSION   DAJVUY010000234 DAJVUY010000000
VERSION     DAJVUY010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4426
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.237"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1088
                     /gene="nadB"
                     /locus_tag="OQQ72_003982"
     CDS             <1..1088
                     /gene="nadB"
                     /locus_tag="OQQ72_003982"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HCS2013531.1"
                     /translation="VGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD
                     GIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDF
                     DERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDL
                     TQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLV
                     YGWSAAEDITRRMPDAHGVSTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIVR
                     TTKRLERALRRINMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGL
                     HFTLDYPELLTHSGPSILSPGNHYINR"
     gene            complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="OQQ72_003983"
     CDS             complement(1073..1810)
                     /gene="trmN"
                     /locus_tag="OQQ72_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HCS2013532.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLTQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            1942..3276
                     /gene="srmB"
                     /locus_tag="OQQ72_003984"
     CDS             1942..3276
                     /gene="srmB"
                     /locus_tag="OQQ72_003984"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HCS2013533.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3485..4366)
                     /locus_tag="OQQ72_003985"
     CDS             complement(3485..4366)
                     /locus_tag="OQQ72_003985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2013534.1"
                     /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFS
                     VQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKGSDPDGELRVVSGETLLS
                     YRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELG
                     EQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIEL
                     LSIESIKRCVAANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVS
                     PAMHTFIQCIEECFLPG"
BASE COUNT         1125 a         1207 c         1122 g          972 t
ORIGIN      
        1 ttgtaggcgc gtgggtatgg aaccgaaata aagaaacggt ggaaacctgc cacgcaaaag
       61 cagtggtact ggcaaccggc ggtgcgtcga aggtgtatca gtacaccacc aatccggata
      121 tttcttctgg cgatggcatt gctatggcgt ggcgcgcggg ctgtcgggtt gccaatctcg
      181 aatttaatca gttccaccct accgcactgt atcacccaca ggcacgcaat ttcctgttaa
      241 cggaagcact gcgcggcgaa ggcgcttatc tcaagcgccc ggatggcacg cgttttatgc
      301 ccgattttga tgagcgcggc gaactggccc cgcgcgatat tgtcgcccgc gccattgacc
      361 atgaaatgaa acgcctcggc gcagattgta tgttcctcga catcagccat aagcccgccg
      421 attttattcg ccagcatttc ccgatgattt atgaaaaatt gctcgggctg gggattgatc
      481 tcacacaaga accggtaccg attgtgcctg ctgcacacta tacctgcggt ggtgtaatgg
      541 ttgatgatca tgggcgtacg gacgtcgagg gcttgtatgc cattggcgag gtgagttata
      601 ccggcttaca cggcgctaac cgcatggcct cgaattcatt gctggagtgt ctggtctatg
      661 gctggtcggc ggcagaagat atcaccagac gtatgcctga tgcccacggc gtcagtacgt
      721 taccaccgtg ggatgaaagc cgcgttgaga accctgacga acgggtagta attcagcata
      781 actggcacga gctacggctg tttatgtggg attacgtcgg cattgtgcgc acaacaaaac
      841 gtcttgagcg cgccctgcgg cgtatcaata tgttgcaaca ggaaatagac gaatattacg
      901 cccacttccg cgtgtcgaat aatttgctgg agctgcgtaa tctggtgcag gttgcggaat
      961 tgattgttcg ctgtgccatg atgcgcaagg agagtcgtgg cctgcatttc acactggatt
     1021 atccggaact gctcacccat tccggtccgt cgatcctttc ccccggcaat cattacataa
     1081 acagataaaa agcctgggtc agcgccgtat acgcttcgga atagttctgg tctggcccac
     1141 gaatgactaa gcgatcgcta aagcattctc ccgcctgcgg ggagaatgcc agcagcaccc
     1201 gatgcggcag tcgcgcttcg ttttccgcca catccgtccg caaacgtaaa tgccagccca
     1261 tgcttaatgc cagctccgta aaaccattac caatctgctc tggcagcact acgcagaaaa
     1321 atccctcttc ggtaatgcac tccgccgcac aggtcagcag cgatgggtga tcaagcgtag
     1381 tggtatagcg agcctgttcc cgttgaggga tcgcgcactc tactccctgc tgatagtaag
     1441 gtgggttact gatgattaaa tcgaagcgta ctgtctgctg tgtgagccac tgctgaatat
     1501 ccgccgtatg gacgttaatc cgctctgccc acggggactg gttgatattt tcctgcgcct
     1561 gcgcggcagc ttcactttcc agctcaacgg catcaattat cacgctgtca ctggttcgct
     1621 gcgccagcat cagtgccagc aacccgctac ccgcgccgat atcaaggcaa cgtttcaccc
     1681 cagccaccgg tgcccatgcg cccagcaaaa tgccatccgt tcccactttc atcgcacagc
     1741 gatcgtgagc aacaaaaaac tgtttaaaag taaatccatt acgacgaagc acggatgtag
     1801 actgtgacat gaaaataaaa ccttgcagga aaaacggcga tagcaccggg tgagaacaat
     1861 acccgagaag cgatatccat acaaacagat gaagattgca gccgtaacgt ctataatcag
     1921 cgccccacac agaggtagaa catgactgta acgacttttt ccgaacttga actcgacgaa
     1981 agcctgctgg aagccctcca ggataaaggt ttcactcgcc cgaccgccat tcaggctgcc
     2041 gccattccgc ctgcgctcga tggccgtgat gtactcggtt ctgcgccgac aggcaccggt
     2101 aaaacggcgg cgtatctgct gccagcgttg cagcacctgc tcgatttccc gcgtaagaaa
     2161 tccggtccgc cgcgtatttt gatcctcacc ccaactcgcg agctggcgat gcaggtggcc
     2221 gatcatgccc gcgaactggc gaaacatacg catctggata tcgccaccat taccggcggc
     2281 gtagcctata tgaaccacgc ggaagtgttc agcgaaaatc aggacatcgt ggtcgccacg
     2341 accggacgtc tgctgcaata cataaaagaa gagaacttcg attgccgcgc ggttgaaacg
     2401 ctgatcctcg acgaagcaga ccgtatgctg gatatgggct tcgctcagga tatcgaacat
     2461 attgctggcg aaacgcgctg gcgtaaacag accctgctct tttcggcaac gctggaaggc
     2521 gatgcgattc aggactttgc cgagcgtctg ctggaagatc cggtggaggt ttctgccaat
     2581 ccgtccaccc gtgagcgcaa aaaaattcat cagtggtatt accgcgccga tgacctggaa
     2641 cataaaaccg cattgctggt gcatctgtta aaacagccgg aagcgacccg ctcaattgtg
     2701 tttgtgcgta agcgtgaacg tgtgcatgag ctggcaaact ggctgcgcga agcgggcatc
     2761 aacaactgct atctcgaagg tgagatggta cagggcaagc gtaatgaagc gattaaacgc
     2821 ctgaccgaag gccgcgtaaa cgtactggta gcaaccgatg ttgccgcgcg cggtatcgac
     2881 attccagacg tcagccacgt ctttaacttc gatatgccgc gcagtggtga tacttatttg
     2941 caccgtatcg gacgtaccgc gcgcgccggt cgtaaaggca ccgcgatttc gctggtggaa
     3001 gcccatgacc atctgctgct tggcaaagtt ggccgttata ttgaagagcc gataaaagct
     3061 cgcgtcattg aggaactacg cccgaaaacg cgtacgccaa gcgagaagca gaccggcaag
     3121 ccatcgaaga aagtactggc aaaacgcgcc gagaagaaaa aagctaaaga gaaagagaag
     3181 ccgcgggtga aaaaacgcca tcgcgacacc aaaaatattg gtaagcgccg taaaccgagc
     3241 ggaacgggcg tgccaccgca aacgacagaa gagtaatctt aattccgggt ttaagcccgg
     3301 aattaaaagt gctggcaaac gcaaaactgc ctgatgcgct acgcttatca ggcctacatg
     3361 gctcatgcaa tatattgaat ttgcacgatc ttgtaggccg gataaggcgt tcacgccgca
     3421 tccggcatga acaaaacgca cttcgtcgac aagttgggtg ccgggtttaa gcccggcatt
     3481 atttttatcc cggcaaaaaa cactcttcaa tacactgaat aaaagtgtgc atcgccgggc
     3541 taaccgcttt tccagcatgg tgtgcgcaca tagccgtaat ggtctgcgac tgttcgccaa
     3601 aaggcaattc aattaattct ccgctctcaa gctctttttc caccgcaaag cggggcaagt
     3661 aactgacacc gatattcgcc gcgacacaac gtttgatact ttcaatgctt aacagctcaa
     3721 tggtgttttc caccgtgatc cgccgctgac gcagcgtgct ctcaaatatc tgccggaaga
     3781 cacattgcgg ttcgttgata ataaagctac aggcgttatg tcttcccggc tcagtaaaat
     3841 cgacatctgc aatttgcggt gaagccacca gcaccagcga ttgttcaccc aactctcgtc
     3901 ggttcagggc atcatcattc cctacgcgat aaaagacgcc gacatcggcc tcatcattca
     3961 gtagcgcatc acggatcacg taacagttca gcgactgcaa cgataaacgc acttttggtg
     4021 cgcgttgccg aaaacgctgc aacacctgcg gcattcggta agagagcaac gtttcgcccg
     4081 aaacaacgcg tagttccccg tccggatctg accccttttt ggcagcctca cgaagcgtat
     4141 ccatcactcg ggtaagttca taaatgtgcg gcagcaactt ttttccttcg cgggtaaggc
     4201 acatccgtcg gccaattttc tcaaataact ggactgaaaa ctcctgctca agctgctgaa
     4261 tatgaaaagt caccgtcgat tgtgtacagc acaatttttg cgaagctcgc aaaaaggaac
     4321 cctcttccac cacggtttta agcgtaataa aacggcgcag atccataacc ccgaacctat
     4381 cgaaaatatc gaatctagaa tataaaaaca ttcatttttt taaatg
//
LOCUS       DAJVUY010000235         4403 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.238, whole genome shotgun sequence.
ACCESSION   DAJVUY010000235 DAJVUY010000000
VERSION     DAJVUY010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4403
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.238"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            228..600
                     /locus_tag="OQQ72_003986"
                     /pseudo
     CDS             228..600
                     /locus_tag="OQQ72_003986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611434.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1162..2109)
                     /gene="icsP"
                     /locus_tag="OQQ72_003987"
     CDS             complement(1162..2109)
                     /gene="icsP"
                     /locus_tag="OQQ72_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HCS2013535.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     gene            complement(3490..3642)
                     /locus_tag="OQQ72_003988"
                     /pseudo
     CDS             complement(3490..3642)
                     /locus_tag="OQQ72_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            3698..4390
                     /gene="ospZ"
                     /locus_tag="OQQ72_003989"
     CDS             3698..4390
                     /gene="ospZ"
                     /locus_tag="OQQ72_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HCS2013536.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RFSQIKARMSVT"
BASE COUNT         1352 a          864 c          850 g         1337 t
ORIGIN      
        1 tgcgatctgg ttcaacaata tgcagatggt acacaacctc tttaaccagc ccatccggat
       61 tattcagagc ccttccgcaa tccggaataa aagtgctgtt ttaccgtgaa ccctctgaaa
      121 atcagcgagc agtgttttaa ccagccgacg ttcagagcgt actgacagac ggtggacaat
      181 ttgaataaac agttcaatca gaccgtagat gctctcccgt tggcgacatg ctgggagcgg
      241 tggaacaccg cttcggcaac gagcttccgg cgtctccagt gaagtgactg acggataatg
      301 gttcatgcta ccgggctaat gaaacacgcc agttcacccg gatgttggga ctttgttgaa
      361 ccgaagaaca cggcggtgcg gagtccggag agtaacagaa tagcaaagag cttcgtgaaa
      421 acaataaagt gtgactacat cagtatcatg cccaaacctg acgggttaac ggcagcaaag
      481 aaccttgcag aggcattcga gcattataac gaatggcatc cgcatagtgc gctggattat
      541 cgctcgccac gggaatatct gcggcagcgg gccaatgata acaggtgtct ggaaatatag
      601 gggcaaagcc acccacgaac gatccagcat ataatcaaga aattagattt catttaacat
      661 aagatagatt atgtgcacca agaggcattt ccttaatttc tgaatttaca ggctcttttg
      721 ctctctttgc tatgctgtgg atttggaaag atagagtgct ggctgattat ttaggtattt
      781 tcatcagcat gtccctgata gcactgttcc atcagcgctt tcaggcgata atagtagacc
      841 ttggatagcc tctgctcatg tgtaacttga taccccgaga acagccacga tgctctaagc
      901 ggttcttatt tctccggtct cagggtcggt aatgccaaca gtaagtccac agtaatcaac
      961 gaagagtttt ttgaaccgcc ccggaaatcc tggagactaa acgccctgag aaagaggtaa
     1021 acagaatgac taaaaataca cgtttttccc ccgaagtccg tcaacgggca gttcgtatgg
     1081 ttctggaaag tcagggcgaa tatgactcac aatgggcggc aatttttagc catgaaaacg
     1141 taatcaactc ggtgaaccaa ttcaaaaaat atactttata cctgcggaag tgagaaaacc
     1201 aatatattca atacttgcac tatttttaat ggtgccagat atattggtac tttgctcata
     1261 aagagatgta tcaccttttt tattagaaat gtaatttctg gagccttcta tataaaattt
     1321 tgcactgggg gtgacatagt atccaatatt cgcagcaaca gagcagtaat tttggttttt
     1381 tatttcatct ttaaaaattg tctcagtctg atagtgttta tctgtatcag atgaacgaac
     1441 ccaaccacta tatttcagtt ctgctccaaa ctcaaaattc tcatggcggt aattagcagt
     1501 taatccaata taaggtattt tgaagagctg tttgtaacct attgttcttt caccactagg
     1561 atgtgcccct tttttattcc tgttcccccc gttttcacta taaatataac tccctcccat
     1621 tgcattaaaa ctgtaacgac tctcttggta acctgctatt agtccaagtc gataatccaa
     1681 attatttaat aaccaacctt taagattcag ctcgaattcg ttagcatcac ggagatgcgt
     1741 attgggatgc cagctctggt cggtccatac ctgaggggta ttggaattgt tccagtcttt
     1801 atcaaccatg cttgctttct ggttacctaa agtagtccaa ccggaaactc cgaaagacac
     1861 ttttggaatt agcttccaat cgatgccacc tctaacaata gtcgcattac tgtatttcca
     1921 gtccagttga ctaatttttc tccccccttc cttgggatga taaacgcgtt cttttgtttt
     1981 gccactcaga gatcctagac taatatccgt actgatgtta tccggtatga aaagtggata
     2041 gttagtggta gcatgtgtag taaagatcgc aggtacacaa agtgcaagta caaggaattt
     2101 taatttcatc gagaactcta cttttttggt tgaaatgtcc atgatcttct tactttataa
     2161 gataaacgtc aatgccaagc attattttaa ttaaatattt gtttatgtta ccaagaacat
     2221 atcttttatt ataatattta ttgaactttt gtaaaaataa aaaaatacct cattgtgcga
     2281 ataaagtaac gggggccata gatttctcta cctacctttt ggtgttcata cctgaggctg
     2341 atagtttcag gattccgcga caattctact caccttcttg ttctctcgcc aatatgaaat
     2401 caatcagaaa agcgttccat aagaacaacg ataagacaat aaattgtcat cacggctgca
     2461 atagccaacg tgcctttcag taccaacatg acaacctcct gtatttgacg taacgtgtgc
     2521 tgataaatat gtatttgtat ctcaactgac tcaatacaac acttaagtat agtttttcag
     2581 attttgtttt tcccgtgaaa tattatggaa atggcagaag caatacattg aattccgatt
     2641 cgagtgaata cggctagcgg gcacctcact ttagcactga agccatcaac ttttatttga
     2701 cttatttcaa tggaaagctt tctcactatc agtacaggta attcccatcc ttttaaagtc
     2761 gagagtcaga ctgcgactaa tacagttaaa gtgaccaaac tcagttatcc tctacacatt
     2821 ttacctcatg tttacttgga caattcattg gtgcttttat aaaagaataa atattctact
     2881 aatttaatgc atcacctaaa atagtatttt ttataataga actgtatcta tagtatatta
     2941 ttaaagctta attatttatt atgctttaat gtggttgtcc gattaaggac taatccttga
     3001 aaacgccgta tagggcggga gttcactcta ttgcgataac gtaaccgtac aatattgtgc
     3061 gtttcccaaa ttgaccacta ctgaactatt ctgggattta aatgcaataa aatggttggt
     3121 tgaaggtcgt ggtgatgatg ttagtccttt tgagaatatt ccagtgccag atcttactta
     3181 taataaagag gcttggcagt ttggataagc tattgtcctt attccactaa tacaaacttt
     3241 ttgtaaagta tattaaatat acttcatttc atactgaaat ccccggaagt attcaatcaa
     3301 acaattacac cataaaagga agagggagcc ccaattaagt tatcaagcat gtttatgata
     3361 cctgcagggt ataaattttc tggctgcaag cagacacata taaaacgtct ttattgatcc
     3421 tacccacata atatggacgc agtcgtaagt gaggctctgt gagcctaccc acgtaatatg
     3481 gacacaggcc taagcgaggt tctggttttc aaattgttcc ggactgaggc cgccacacca
     3541 acggtgccgt cgccagcgat tgtaatcgca ctcgatataa ttaaacactg ttgcccgcac
     3601 tatttcccga tagataaagt gttctccgtg gagacattcc acttaggaac aattatattg
     3661 ttcatggtaa tgtttatatt tgagtataga gattaaaatg attagtccca tcaagaatat
     3721 taagaacgta tttccaataa atactgcaaa tactgaatat atagtgagaa atatttatcc
     3781 tagagttgaa catggttact ttaatgaatc accaaacata tatgacaaga agtatatctc
     3841 tggtataacc agaagtatgg cacaattaaa aatagaggag tttattaatg agaaatccag
     3901 acgacttaat tatatgaaga caatgtattc tccatgtccg gaagattttc agcctatttc
     3961 cagagacgaa gccagtatac cggaaggaag ctggttgaca gttatatctg gaaaacgtcc
     4021 tatggggcaa ttttctgtgg atagtttgta ccatcctgac ttacatgcat tatgtgagct
     4081 cccagagatt agttgtaaga tcttccctaa agaaaatagt gattttttgt atataattgt
     4141 tgtattcaga aatgattctc cccaaggaga actacgggca aatcggttta tagaactata
     4201 tgatataaaa agagagatta tgcaagtgtt aagagatgag tcgccagagt taaagtctat
     4261 taaatctgag attattattg ctcgtgaaat gggagaactt tttagttatg catcagagga
     4321 aatagatagc tacataaaac aaatgaatga caggttttct caaatcaagg ctcgaatgtc
     4381 tgttacttaa tgtatattaa ttg
//
LOCUS       DAJVUY010000236         4373 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.239, whole genome shotgun sequence.
ACCESSION   DAJVUY010000236 DAJVUY010000000
VERSION     DAJVUY010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.239"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..100)
                     /locus_tag="OQQ72_003990"
     CDS             complement(<1..100)
                     /locus_tag="OQQ72_003990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCS2013537.1"
                     /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVE"
     gene            complement(113..1894)
                     /gene="gcl"
                     /locus_tag="OQQ72_003991"
     CDS             complement(113..1894)
                     /gene="gcl"
                     /locus_tag="OQQ72_003991"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HCS2013538.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD
                     AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ
                     EMQKAGRLPCRKEWVADCQQRKRTLLRKTYFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE
                     LDNVMEFEDIADNAVDAPTETCFMHYE"
     gene            complement(1984..2799)
                     /gene="allR"
                     /locus_tag="OQQ72_003992"
     CDS             complement(1984..2799)
                     /gene="allR"
                     /locus_tag="OQQ72_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HCS2013539.1"
                     /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS
                     DISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVA
                     GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI
                     ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP"
     gene            complement(2877..3359)
                     /gene="allA"
                     /locus_tag="OQQ72_003993"
     CDS             complement(2877..3359)
                     /gene="allA"
                     /locus_tag="OQQ72_003993"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HCS2013540.1"
                     /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV
                     EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL
                     STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
                     "
     gene            3589..>4373
                     /gene="allS"
                     /locus_tag="OQQ72_003994"
     CDS             3589..>4373
                     /gene="allS"
                     /locus_tag="OQQ72_003994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS2013541.1"
                     /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT
                     GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSKLQQVNDGVERQVNIVINNLL
                     YNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
                     LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQK
                     EIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPT"
BASE COUNT         1117 a         1185 c         1044 g         1027 t
ORIGIN      
        1 attcaacgcc gcgaaaacca cactgcgcag ctttctcaaa acgggcgaga aaatcatatt
       61 caccaaataa catcgataaa ttagcagaga aacgtaacat tatttatctc ccttattcat
      121 agtgcatgaa gcaggtttca gtcggtgcgt ccactgcgtt atcggcgata tcttcaaatt
      181 ccatgacgtt atccagttcg ctgcccatcg aaatattggt cacacgctcg agaataactt
      241 ccacgactac cggtacccga tattgcgcca ttaaggcttt cgcctgttca aaggctggcg
      301 caatatcttc cggtttgaag acgcgaatcg ctttacaacc taaaccttcc gctactttta
      361 cgtggtcgac gccgtaaccg ttcacttcgc tggagttgat attctcgaaa gcgagttgca
      421 cgcagtagtc catgtcaaag gcgcgttgtg actgacgaat caggccgaga taggcgttat
      481 tcaccagcac atggatgtac ggaatgttga actgcgcgcc aacggctaac tcttcaatca
      541 ggaactggaa gtcaaagtcg ccagaaatcg ccaccacatt gcgtttcgga tcagcggcac
      601 aaacccctag cgcagccgga atcgtccagc ctaacggacc agcctgacca cagttgatcc
      661 agtggcggtc tttaaagaca tgcagcattt gtgccgcagc gatttgtgac agaccgatgg
      721 tggtgacata acaaacatcg cgaccaaagg ctttgttcat ctcttcatac acgcgctgcg
      781 gtttcaccgg cacgttgtcg aagtaggttt tgcgcagcaa agtgcgtttg cgctgctggc
      841 agtcggcgac ccattcttta cgacacggca gacgacccgc tttttgcatc tcctgcgcca
      901 cttcaaccag cagtgtcagc gccgctttag catcagagac aatgccgaga tccggacaca
      961 gcacgcgacc aatttgcgtc ggctcaatat cgatatgaac gattttgcgc ccttcggtgt
     1021 atttctctac cgaaccggta tgacggttag caaaacggtt accgatacca aacaccatgt
     1081 cggacgccag caacgttgcg ttaccgtaac gatgcgcggt ttgcagaccg accatcccgg
     1141 ccatcagttc atgatcgtcc gggatacagc cccagcccat cagcgttggg atcaccggaa
     1201 cgctggtcag ttcagcaaac tgttgtaaca gtgcagctgc gtcagcattg attaccccgc
     1261 ccccggcaac aatcaccgga cgttcggcct ggattaacat ttctacagct ttttcgatct
     1321 gcatacggct ggcagcaggt ttgtagaccg gcagcggttc gtacatgtca ggatcaaact
     1381 cgatttccgc aacctgaacg tcgaacggta aatccaccag taccggaccc ggacgaccag
     1441 aacgcatcag gtgaaatgcc tgttgcagca cgcgaggcac cagcgccgct tcacgaactg
     1501 taaccgccat tttgctgacc ggtttagcaa ttgcttcaat atctacggcc tgaaaatctt
     1561 ctttatgcag acgggcgcgc ggtgcctggc cggtaatgca cagaatagga atggaatcag
     1621 cagaagcgga atagagcgcg gtgatcatgt ccgtgcccgc aggaccggaa gtccccagac
     1681 atacgccgat attccctgcc gttgcgcggg tataaccttc cgccatgtgc gaagcacctt
     1741 ccacatgacg cgccagaatg tgacgaatac cgccgtgctt acgcatcgct gagtagaacg
     1801 gattgattgc agctcccgga acaccgaagg cggtggtgat accttctttc tccagcacat
     1861 acattgccgc gtcaacggct ctcatttttg ccattttatt cctatctcta tttattggaa
     1921 aatttttcca actttcaaat tttgtcaaaa aaacccgctc cgcagagcgg gatgcgacag
     1981 acattatgga tgtgctttca gtcccaacgc cgtgctgata tcgcgggcgg tgtctctgac
     2041 cagctcaccc tgactgacaa aacgatcttc tgtcagtctt gatgaaggcc cggagatgga
     2101 gatagcggca acaacgctac cgacatcatc gtaaattgct gaagctatgc aattcagacc
     2161 tacaacatgc tcttctttat ctacggtata gcccagttca cgcgcttgtt ccaggtcctt
     2221 cagcaaggtg ggcatatcca caagcgtagt tggcgtaaac tgctgcaaac cggtttgcag
     2281 aatgatgctc atcaactcct cttccgccag cggataaagc agcgctttgc ccgcaccgga
     2341 agcatgcagc ggcagacgac tgcccagtgg cgcacacatc ctgaccattg atttacactc
     2401 taactgacca attaatactg cttcattgcc gttacggatc gcgacattga ccgtttcgcc
     2461 ggaaagtaac atcaggcggc gcataaacgg cccggcgacg gagaggacat cgcggttatg
     2521 gatgtacgcc gcaccgacgt taaagacacc taatcctata tgccaccagc ctaattgact
     2581 gtcctgatag acaaaatccg ctgcttgtaa aaccttcagc aagcgaaagg tcgtggagag
     2641 cggcaaatcc agattgagag aaatatcgct aaccgacgaa cttcccccac ttttttccag
     2701 atattgcaga atcgcaattc cccgctctaa cgcctgtgcg cccttctgtg ccacaggctc
     2761 cgcctgtcct ggcctgccgc gccgtctaac ttccgtcata cctacgttaa ctccgaccta
     2821 caagtgagca taaacaatga acaattagtt tatcttatgc aagtcggttg caggcgtcac
     2881 gcaaaacaga gttcctgttc aggaatactt tcaacatcac agttgtcact gccgccgcga
     2941 tcgatggtca gaaaatcggt gacgcgctgc caggcgaaaa gtgggtgatg ccagacgtta
     3001 cgatggtaat tcactccctg ttcgccgttg gtgataaacg cccgcagcgt tgacaggtct
     3061 ggtttgtcgt cgcctaacgc cacgaccacc acaaacactt cacctttcat cgggataaag
     3121 gcctgagtgc ccagcggatg acgttcgagt tcgtgaatgg tcagcggcag attcgccggt
     3181 tgcgcgcggt taatgctaat aagcgtacgg tcttgctcaa gaatctcaac cagcgccaaa
     3241 tcgtggtaac gctccaccag gccattgtta atatggaaaa aatcccgttg ctgagtttcg
     3301 attacgtcgc cataagcact aaaggcttcc tgacttaacg gtaatacctg aagtttcatc
     3361 tttttgtcct tgtaacataa ttccgttcaa ccaccgccga ccggtcagct tgggttcaat
     3421 aacaggcaat ctaaaacctt aagagaacaa catcaataca aaagttggaa tatttttcca
     3481 aaactagatt tagtccacaa attgaacagg gttatcatgt aaaaatactg ataaatcaga
     3541 ggataagaaa atcacgcaac ttgcggattt aaaaggggat acctgaagat gttcgatcca
     3601 gaaaccttgc ggactttcat tgcggttgct gaaacaggaa gtttttcaaa agcggcagaa
     3661 cgattatgta aaaccacggc gacgatcagt tatcgcatta aacttctgga agagaatacc
     3721 ggagtagcgc tgtttttccg tacgactcgt agcgtaacgt tgacagcggc tggcgagcat
     3781 ctactttccc aggccagaga ctggctgagc tggctggaaa gtatgcccag caagctgcaa
     3841 caggtgaatg atggcgtgga acgccaggtg aatattgtca tcaacaacct gctctataac
     3901 ccccaggccg tcgcccagtt gctggcgtgg ctgaatgaac gttacccctt tacccagttt
     3961 cacatctccc gacaaatcta tatgggcgtc tgggactcgc tattgtacga aggtttttcg
     4021 ctggctatcg gcgtcacggg aactgaggcg ctggcaaata cctttagtct tgatccctta
     4081 ggatcggtgc aatggcgatt tgtcatggcg gcggatcatc cgctggcgaa cgttgaagag
     4141 ccgctaacag aagcgcagtt gcgtcgcttt ccggcggtca atattgaaga cagcgcccgc
     4201 accttaacca aacgcgtcgc ctggcgattg ccagggcaaa aagagattat tgttcctgat
     4261 atggaaacga aaatcgccgc ccatctggcg ggcgttggca ttggtttttt gccaaaatcg
     4321 ctttgccagt caatgatcga taatcaacaa ctggtcagcc gggtaatccc aac
//
LOCUS       DAJVUY010000237         4369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.240, whole genome shotgun sequence.
ACCESSION   DAJVUY010000237 DAJVUY010000000
VERSION     DAJVUY010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.240"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(24..1238)
                     /gene="ydcO"
                     /locus_tag="OQQ72_003995"
     CDS             complement(24..1238)
                     /gene="ydcO"
                     /locus_tag="OQQ72_003995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BenE family transporter YdcO"
                     /protein_id="HCS2013542.1"
                     /translation="MLRCLYAITYEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQ
                     AAIVARATTAQISGWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLT
                     LNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAEILLRFGLQAFASLDGQ
                     FTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPD
                     FSFAHSLSVALPLFLVTVASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVY
                     SVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITEMMAALPVSWIQ
                     MLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
                     VVLNLIADRNQY"
     gene            1291..1827
                     /gene="sutR"
                     /locus_tag="OQQ72_003996"
     CDS             1291..1827
                     /gene="sutR"
                     /locus_tag="OQQ72_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SutR"
                     /protein_id="HCS2013543.1"
                     /translation="MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNE
                     SSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHF
                     SIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR
                     NGGEQTVHFHSLIHYPRS"
     gene            1900..3861
                     /gene="rlhA"
                     /locus_tag="OQQ72_003997"
     CDS             1900..3861
                     /gene="rlhA"
                     /locus_tag="OQQ72_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA 5-hydroxycytidine C2501 synthase"
                     /protein_id="HCS2013544.1"
                     /translation="MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA
                     SNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMG
                     ILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATI
                     EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS
                     MKDNDQTANLGALIDAGVRSFKIEGRYKDMNYVKNITAHYRQMLDAIIEERGDLARAS
                     SGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLKVAKDHLDV
                     AVTEPLANGDGLNVMIKREVIGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNR
                     NLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNA
                     EKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASY
                     QRGSRKPVAEPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPV
                     MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN
                     HILKMPLPGSVVASVSPDELLKTLPKRKG"
     gene            complement(3953..4183)
                     /locus_tag="OQQ72_003998"
     CDS             complement(3953..4183)
                     /locus_tag="OQQ72_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncJ family protein"
                     /protein_id="HCS2013545.1"
                     /translation="MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEAD
                     SDELRAVAEESAEGLREHFYWQKSRKPEAGQR"
BASE COUNT         1134 a         1126 c         1086 g         1023 t
ORIGIN      
        1 cgtctttcag ggcgtgtagg atgtcaatat tggtttctgt cagcgattaa attcaacacc
       61 acgtaacaaa cgcctccggc aattaatccc cagaacgcag aaccaatccc gaccagcgtc
      121 aatccacttg ccgttaccag aaatgccacc accgccgcgt cgcgctcacg ctcattatgc
      181 agcgcctgat acaaactgcc gccaatggta ctcaacagcg ccagacctgc cagcatctgg
      241 atccaactta cgggcagggc agccatcatc tcggtaatgg cactaccaaa cagacctgcg
      301 agcaaataga aaatgcctgc aacggcagct gccagccaac gttgatcttt atccggatgc
      361 gcttccgggc tttggcaaat agccgcggtg attgccgcaa taccgacgga ataaacgccg
      421 aaaggggaaa aaaccagtgc cagcaatcca gtaaatacaa ttaatggcga aacaggagcc
      481 gaatatccag ctgctttcat tgctgcgata cccggtgcgt tttgcgatgc caccgtcacc
      541 agaaaaaggg ggagtgcaac gctcaggctg tgagcaaacg aaaaatcagg ggtaatataa
      601 gtggggagaa cgggtttaaa gacaacatca gttgtgacaa cgtcaccttg cgcgatgacg
      661 atcacgatcc caataatcat cgcggcaatt accgcatagc gcggcgcaac ggccttggtt
      721 gccagccata ccagcaacat acttccacac aacgtaaatt gaccgtccag actggcaaac
      781 gcctgtaaac caaagcgtaa taaaatctcg gcaagcattg ccgccgcaag cgagtgcgga
      841 ataatgcgca tcagacgagc aaagagtccc gttatgccgc agaggactat taacgcgttg
      901 gtgacaataa aaacgccgat ggcttcgtta agtgttagtc cctgcaatcc ggtgaccaac
      961 aaagccgcgc caggcgttga ccatgcggtg agaacaggta cgcgatacca taatgtcaga
     1021 gtcagcgtac tgacgcccat tgccagcccc agcgccgtca tccagccaga gatttgtgca
     1081 gtggtggctc tggcgacaat cgctgcttgc cagattattg ccgctgaact ggcgtagcca
     1141 attaataccg ccagaaaccc cgccagtagc gtgggtggag gaatagaaaa cagacgcata
     1201 gtcacctcgt acgttatagc gtacaggcac cgtagcattt gtccgttata acgcacaagt
     1261 gataaacttc cgttttgccg gaggagtcgc atggaaaatc tcgctcgctt tttatccacc
     1321 acacttaaac aactacgcca gcagcgcggc tggagtcttt cgcgactggc agaagcgacg
     1381 ggcgtttcta aagcaatgtt agggcagatt gagcgtaatg agtccagtcc gacggtcgcg
     1441 acattatgga aaattgccac cgggttgaac gtaccatttt caacatttat ttctccgccg
     1501 cagtccgcta cgccttcagt ttatgatcca caacagcagg cgatggtgat cacttcgctg
     1561 tttccttatg atccacaact ctgctttgaa cacttctcga ttcagatggc atctggtgca
     1621 ataagcgaat cgacgcccca tgagaagggg gtaatcgaac atgtcgtcgt cattgatgga
     1681 caacttgatc tgtgcgttga tggggaatgg cagaccctta attgtgggga aggcgttcga
     1741 tttgctgcag acgtcacgca tatctatcgt aatggtgggg agcaaaccgt acattttcat
     1801 tccctcatcc attacccgcg cagttaagcg ggaaaactat ttcgcaacgt cgcgcttgtg
     1861 gctaaaatag ccgccatttt tcagctactg gataagaatg tgaccgtatc ttctcatcga
     1921 cttgaactgt taagcccggc acgcgatgcc gccattgccc gcgaagctat tttgcacggt
     1981 gccgatgctg tttatatcgg cggccctggt tttggtgccc gtcataatgc cagtaatagc
     2041 ctgaaagata ttgccgagct ggtgccgttt gcccatcgtt atggtgcaaa aattttcgtc
     2101 acgcttaaca ccattttgca tgatgatgag ctggaacccg cgcaacggct gattactgac
     2161 ctctaccaga ccggtgtcga tgcgctgatt gttcaggata tggggattct ggaacttgat
     2221 attccgccga ttgaactgca cgccagtacg cagtgcgaca ttcgtacagt tgaaaaagcg
     2281 aagttcctct ctgatgttgg cttcacgcag attgtgctgg cgcgagagct gaatcttgat
     2341 cagatccgcg cgattcacca ggctacggac gcgaccattg aattctttat tcatggggca
     2401 ctgtgcgtgg cctattcggg tcagtgctac atttctcatg cgcaaacagg gcgtagcgcc
     2461 aaccgtggcg attgctcgca ggcgtgccgt ttgccataca cattgaaaga cgatcagggg
     2521 cgggtggttt cctatgaaaa acatctgctg tcgatgaaag ataacgatca gactgccaac
     2581 ctcggcgcgc tgattgatgc tggtgtacgc tccttcaaga ttgaaggtcg ttacaaagat
     2641 atgaactacg tgaagaatat caccgcccat tatcgccaga tgcttgatgc cattattgaa
     2701 gaacgtggcg atctggcgcg cgcttcatca ggtcgtactg aacatttctt tgttccatcg
     2761 acggaaaaga ctttccaccg tggtagcaca gattattttg tgaatgcccg taaaggcgat
     2821 attggcgcgt tcgattcgcc gaaatttatc ggcctgccgg tgggtgaagt attgaaagtg
     2881 gcgaaagatc atctcgatgt tgccgtcacc gagccactgg caaatggtga tggcctgaac
     2941 gtgatgatta aacgtgaagt catcggtttt cgtgccaata cggtcgagaa aaccggagaa
     3001 aatcagtacc gcgtctggcc caatgaaatg ccagcagatt tgcacaaaat tcgtccacat
     3061 cacccactaa accgtaatct tgatcataac tggcagcagg cactgacaaa aacctccagc
     3121 gaacgtcggg tggcggtaga cattgaactg ggcggctggc aggaacaact gattctgacc
     3181 ctcaccagtg aagagggtgt cagcatcacg catacgctgg acgggcagtt cgacgaagcc
     3241 aataacgccg aaaaagcaat gaacaatctg aaggatggtc tggcaaaact ggggcaaacc
     3301 ctctattacg cccgcgatgt gcaaattaat ttgccggggg cgctgtttgt accaaacagt
     3361 ctgttaaacc agttccgccg tgaagctgct gacatgctgg atgctgcgcg tcttgccagt
     3421 taccagcgcg gcagccgtaa accggttgct gagcctgcgc cggtttatcc gcaaacgcat
     3481 ctgagtttcc tcgcgaacgt atacaaccag aaagcgcgtg aattttatca tcgctatggt
     3541 gtgcagctga ttgacgcggc gtatgaggca catgaagaga agggcgaagt cccggtgatg
     3601 atcaccaagc attgtctgcg ctttgccttt aatctgtgcc cgaaacaggc gaaaggcaat
     3661 atcaaaagct ggaaggcgac gccaatgcaa ctggttaacg gcgatgaagt attaacgcta
     3721 aagtttgatt gccgcccatg cgagatgcac gtcattggca aaatcaaaaa tcacatactg
     3781 aaaatgccgt taccgggaag cgtagtggca tccgtaagtc cggatgagct gctgaaaaca
     3841 ttgcctaagc gaaaagggta aaacgccagt tttctggtta ctcacaactc attgaatctg
     3901 catgatattg cctgccgggt aaggcgtcac gccgcatccg gcatcaaacg actcaacgtt
     3961 gtcccgcttc tggtttgcgc gatttttgcc agtaaaaatg ctcgcgcaaa ccttccgccg
     4021 actcttccgc cacagcacgc aattcatcgc tgtccgcttc atgacgcagc tgatgatcca
     4081 cattctttac ccacacaaat tcatgtcctt tgtgccctgc catgagttgt cctgagaaca
     4141 gcgcacacgt taataagaca accgataacg ccttcgtaaa catcctgcca cctttttctt
     4201 accttttgcc gctatgatgc cgatcgtttc ttgaggttat tattcagttt tgcaaattag
     4261 cgcaaagaaa ttctggaatc ttccttcctg attttgcatt gcattctgtc gttgcggcga
     4321 tttagtgcta ttttcgagca aattacacac agaggtaaac actaatgtt
//
LOCUS       DAJVUY010000238         4292 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.241, whole genome shotgun sequence.
ACCESSION   DAJVUY010000238 DAJVUY010000000
VERSION     DAJVUY010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.241"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..186
                     /locus_tag="OQQ72_003999"
     CDS             <1..186
                     /locus_tag="OQQ72_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS2013546.1"
                     /translation="WRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQA
                     KYVSAIWQKLIPSQADF"
     gene            245..448
                     /locus_tag="OQQ72_004000"
     CDS             245..448
                     /locus_tag="OQQ72_004000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HCS2013547.1"
                     /translation="MSSLFLTEDELLILTGCKYASHQRKWLMENELPFYTNRSGKPIV
                     SRDLFTCNKTLPPREVEPNFGAI"
     gene            448..1473
                     /locus_tag="OQQ72_004001"
                     /pseudo
     CDS             448..1473
                     /locus_tag="OQQ72_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(1501..1590)
                     /locus_tag="OQQ72_004002"
     tRNA            complement(1501..1590)
                     /locus_tag="OQQ72_004002"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1554..1556),aa:Ser,seq:cga)
     gene            1684..2481
                     /gene="mtfA"
                     /locus_tag="OQQ72_004003"
     CDS             1684..2481
                     /gene="mtfA"
                     /locus_tag="OQQ72_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HCS2013548.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            2582..2657
                     /locus_tag="OQQ72_004004"
     tRNA            2582..2657
                     /locus_tag="OQQ72_004004"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2615..2617,aa:Asn,seq:gtt)
     gene            2971..4292
                     /locus_tag="OQQ72_004005"
                     /pseudo
     CDS             2971..4292
                     /locus_tag="OQQ72_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416485.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta domain-containing
                     protein"
BASE COUNT         1202 a          987 c         1013 g         1090 t
ORIGIN      
        1 tggcgttact acaacgatcg cgatgtacgc acaatcgttg agctggggaa agccatagac
       61 ttcgatgcca gaacggctat tccattcgaa ggtgagcgcc ataatgcact tgatgacgct
      121 cgttaccagg caaaatacgt ttcagctatc tggcaaaaac tgatcccgag tcaggctgat
      181 ttttaatgtt caaccctaat tgccgctaac cgtatatagt tagcggcggt tatgagatat
      241 agctatgagc agcttatttt taaccgaaga tgaattgcta atattaacgg gctgcaaata
      301 tgcaagccac cagcgaaaat ggttaatgga aaacgagctt ccgttctata ccaatcgtag
      361 tggcaaaccg attgtcagcc gggatctatt tacctgcaat aaaactttac caccacgcga
      421 ggtagagccg aattttggtg cgatctgatg ggaagacgaa ggaaaaatcc tgagcacgaa
      481 aaattacctc caaatgtata cccaaataaa tatagttatg tatggaaacc aacatccagc
      541 gaatctgtaa cactaaccgc catcaaggat ggtttagctg ctttatggaa aaagtatgag
      601 gaaactgtaa ataatcgcga tcgtgcaatg acattcggtc gcttgtggga aaaattcctc
      661 gccagcgcct attacagtga cctcagtcca agaacacaaa aagattatct gcaacatcaa
      721 aaaagttgct tgccgtattc ggtaaggtgc cggcagattc cataaaacca gaacacatcc
      781 gtcgatacat ggacaagaga ggggaacaga gtaaaacgca agccaaccat gaagtcccgc
      841 gtttacagtt gggggtatga gcgagggtac gtgaaggcta acccatgtgc aggtgtaagt
      901 aaattcaagg ccaaaaaccg cgaacgatat gtaaccgaca aagaatacca ggcagtatta
      961 agcgttgcac ctcttcctgt ttttatcgca atggaaattg cctatctgtg tgcagcgagg
     1021 gtttccgatg tgttatcgct gaaatgggag cagattggaa acgacgggat ctttatccag
     1081 caagggaaaa caggaaaaaa acagataaaa gcatggagtc cacgattaca ggcggcgatc
     1141 gaaaaagcaa aacagttacc aacatccgcc tatgtaatca gcaatcaata cggcaaccga
     1201 tatatgtaca aaggctttaa cgaaatgtgg gtagaagcaa gaaatcgcgc aggcaaaatt
     1261 tcaggtattt taaccgactt cacctttcat gatctgaagg cgaaaggaat ttcagactat
     1321 gaaggaagca gtcgggataa gcaacttttc tctggtcaca aaaccgaggg gcaagtgcta
     1381 atctatgaca ggaaggttaa agtttcaccg acacttgatg tcccgttacc tgaaaatatt
     1441 ccaagtaatt ccacgtgtga tttttgtcac tgacttaatg atgtataagt gattgaattt
     1501 tggcggagag agggggattt gaacccccgg tggagttgcc cccactccgg ttttcgagac
     1561 cggtccgttc agccgctccg gcatctctcc gttcagatgg ttgccatgat gccaggaaat
     1621 ttggcatttt aacagtccct gtccgtgcaa ttttgttcaa gtgacgagtt tgcgagcaaa
     1681 acgatgatta agtggccctg gaaagtacaa gaatcagcac atcaaactgc ccttccctgg
     1741 caggaagcac tatcgatccc ccttttaacg tgtctgacgg aacaggaaca aagcaaatta
     1801 gtcactcttg ccgaacgttt tttacagcaa aagcggcttg ttcctttaca gggctttgaa
     1861 ctggattcat taagaagctg ccggatagca cttctatttt gcctacccgt tctggagtta
     1921 ggactggaat ggctggatgg ttttcatgaa gtcttaattt atcctgcgcc atttgtggtc
     1981 gatgatgaat gggaagacga tatcggtctg gtgcataacc aacgtattgt tcagtcaggt
     2041 cagagctggc agcaagggcc tatcgttttg aactggttgg atatacaaga ttcttttgat
     2101 gcttctggtt ttaacctgat tattcatgaa gtcgctcata agctggacac ccgtaacggc
     2161 gatcgcgcca gcggagttcc ctttattccg ttgcgtgagg ttgctggctg ggaacacgat
     2221 cttcatgctg caatgaacaa cattcaggaa gaaatcgaat tggttggcga gaatgcggcg
     2281 agcattgatg cttatgcagc cagcgatcct gctgaatgtt ttgccgtact ttctgaatat
     2341 ttctttagcg ccccagaact ttttgctcct cgtttccctt cattgtggca acgtttctgc
     2401 caattttatc aacaagatcc tttgcagaga ctgcatcacg ctaatgatac agactcgttt
     2461 tcggcgacga atgttcatta attaacaact ttgcatatta attaaccaat tgaaatgact
     2521 tatgaaattt agtgttgaca gacaaggtac cgctaagtaa tatgcgcccc gttcacacga
     2581 ttcctctgta gttcagtcgg tagaacggcg gactgttaat ccgtatgtca ctggttcgag
     2641 tccagtcaga ggagccaaat tctaaaaatt cgctttttta gcgcaatgtc actgacctta
     2701 gttgaacatt gttttttaac ggatagcggg tttttaacat cttaagcgcc ctcgaccttt
     2761 atggttgagg gcgttttgct atgaacgcca tcaccatttt cccctcgatt ataaaacttg
     2821 agttattcag tagtctcccc tcttgcaact cacacccaaa actgcctaac gaaaagttat
     2881 taattttcaa tcatattgct atcagtattt acattttttc gctgtgctag aaagggcgca
     2941 tttatgttag ctcgttcagg gaaggtaagc atggctacga agaagagaag tggagaagaa
     3001 ataaatgacc gacaaatatt atgcgggatg ggaattaaac tacgccgctt aactgcgggt
     3061 atctgtctga taactcaact tgcgttccct atggctgcgg cagcacaagg tgtggtaaac
     3121 gccgcaaccc aacaaccagt tcctgcacaa attgccattg caaatgccaa tacggtgccc
     3181 tacatccttg gagcgctgga atcggcccaa agcgttgccg aacgtttcgg tatttcggtg
     3241 gctgagttac gcaaactcaa ccagtttcgt acgtttgctc gaggttttaa taatgtccgc
     3301 cagggtgatg aactggatgt cccggcacaa gttagtgaaa aaaaattaac cccgccgccg
     3361 ggtaatagca gtgacaacct cgagcaacag atagccagta cttcacagca aatcgggtct
     3421 ctgctcgccg aagatatgaa cagcgagcaa gcggcaaata tggcgcgtgg atgggcctct
     3481 tctcaggctt caggcgcaat gacagactgg ttaagccgct tcggtaccgc aagaatcacg
     3541 ctgggcgtgg atgaagattt tagcctgaag aactcccagt tcgattttct ccatccgtgg
     3601 tatgaaacgc ctgataatct ctttttcagt cagcatactc tccatcgtac tgacgagcgt
     3661 acgcagatta acaacggctt aggttggcgt catttcactc ccacatggat gtcaggcatc
     3721 aacttctttt tcgaccacga tcttagccgt taccactccc gcgccggcat tggcgcggag
     3781 tactggcgcg actatctaaa attaagcagt aacggctatt tgcgactgac caactggcgc
     3841 agcgcacctg aactggacaa cgattatgaa gcacgcccgg ccaatggctg ggatgtacgc
     3901 gcagaaagct ggctacccgc ctggccgcac cttggcggta aactggtcta tgaacagtat
     3961 tatggcgatg aagtggccct gttcgataaa gacgatcggc aaagtaatcc tcatgccata
     4021 accgctggac ttaactatac ccccttcccg ctgatgacct tcagcgcgga gcaacgctag
     4081 ggtaaacagg gcgaaaatga cacccgtttt gccgtcgatt ttacctggca acctggcagc
     4141 gcaatgcaga aacagcttga cccgaatgaa gtcgctgcac ggcgtagcct tgcaggcagc
     4201 cgttatgatc tggtggatcg caacaacaat atcgttctgg aatatcgcaa aaaagaactg
     4261 gttcgcctga ccctgacaga ccccgtgaca gg
//
LOCUS       DAJVUY010000239         4284 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.242, whole genome shotgun sequence.
ACCESSION   DAJVUY010000239 DAJVUY010000000
VERSION     DAJVUY010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.242"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            37..2199
                     /gene="ybiO"
                     /locus_tag="OQQ72_004006"
     CDS             37..2199
                     /gene="ybiO"
                     /locus_tag="OQQ72_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HCS2013549.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2259..3185)
                     /gene="rlmF"
                     /locus_tag="OQQ72_004007"
     CDS             complement(2259..3185)
                     /gene="rlmF"
                     /locus_tag="OQQ72_004007"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HCS2013550.1"
                     /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3461..3720
                     /locus_tag="OQQ72_004008"
                     /pseudo
     CDS             3461..3720
                     /locus_tag="OQQ72_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
     gene            3985..>4284
                     /locus_tag="OQQ72_004009"
     CDS             3985..>4284
                     /locus_tag="OQQ72_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS2013551.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPG"
BASE COUNT          995 a         1127 c         1074 g         1088 t
ORIGIN      
        1 cttatctttt tgctctgttt tctcactgga ggagtcatgc ggtggatcct gttcatcctc
       61 ttctgcctgc tgggcgcacc tgcccacgcg gtatccatac ccggcgttac aaccacaacg
      121 acaacggact caacgactga accggccccg gaaccggata tcgaacaaaa aaaagcggcc
      181 tatggcgcac tagcggatgt gctggataac gacacctcgc gtaaagaatt gatcgaccag
      241 ttgcgtactg tcgccgcgac gccccctgcg gaaccggtcc cgaagatcgt gccgccgacg
      301 ctggttgaag agcaaaccgt gctgcaaaag gtcaccgaag tcagccgcca ttatggtgaa
      361 gccctttccg cccgcttcgg gcaactttat cgcaatatta ccggctcccc gcataagccg
      421 tttaatccac aaacattcag caatgcgctg acccattttt caatgttagc ggtattagtg
      481 tttggttttt actggctgat tcgcctgtgc gcactgccgc tgtatcgcaa aatgggcctg
      541 tgggcgcggc aaaaaaatcg tgagcgcagt aactggttgc agcttccggc gatgattatc
      601 ggggcgttta ttatcgacct actgttactg gcactgacat tatttgtcgg ccaggtatta
      661 agcgacaacc tgaatgcagg cagtcgcacc atcgctttcc aacaaagttt gtttctcaac
      721 gcctttgccc tgattgaatt tttcaaagct gtactacgcc tgattttttg cccaaacgtg
      781 gctgaactgc gcccgttcac gattcatgac gagaccgccc gttactggag tcgtcgcctg
      841 agctggttaa gcagtttgat aggttatggc ctgattgtgg ccgtgccgat tatctctaat
      901 caggtgaatg tacagatagg tgcgctggcg aacgtcatca ttatgctgtg catgaccgtc
      961 tgggcgttgt acctgatctt tcgcaataaa aaagagatta cccaacattt gctcaacttt
     1021 gcggagcatt cgctggcctt tttcagcctg tttatccgcg cctttgcgct ggtgtggcac
     1081 tggctggcaa gcgcctattt tatcgtgctg tttttctttt cgttgttcga tccgggcaac
     1141 agcctgaaat ttatgatggg tgcaacggtg cgcagcctgg cgattattgg tatcgcagcg
     1201 tttgtttccg gtatgttttc ccgctggctg gcgaaaacca tcaccctctc gccacatact
     1261 cagcgtaact atccggagtt gcaaaaacgg ctgaatggct ggctttcggc ggcgctgaaa
     1321 acggcgcgta ttctgaccgt ctgcgtggcg gtaatgttgc tgttgagcgc atggggattg
     1381 ttcgatttct ggaactggct gcaaaacggc gcggggcaga aaaccgtaga tatcctgatc
     1441 cgtatcgcac ttattctttt tttctcggcg gttggctgga cggtgctcgc cagtttgatc
     1501 gaaaaccggc tggcttcgga tattcatggc cgcccgctac ccagcgcccg tacgcgtacc
     1561 ctgctgacgc tgtttcgtaa cgcgctggcg gtgattatca gtaccatcac catcatgatt
     1621 gtgttgtcgg aaatcggcgt caatatcgcg ccattgctgg caggtgccgg ggcattaggt
     1681 ctggctatct cgtttggttc gcaaacgctg gtgaaagata tcattaccgg ggtgtttatt
     1741 cagtttgaaa acggcatgaa cactggagat ttggtgacta tcgggccgtt gaccggcaca
     1801 gtggaacgga tgtcgattcg ctccgtgggc gtgcgccagg ataccggggc gtatcacatc
     1861 attccgtggt cttcgataac cacctttgct aacttcgtcc gcggtattgg ttcggtagtg
     1921 gcaaactacg atgttgatcg ccatgaagat gctgataaag ccaatcaggc actgaaagat
     1981 gcggtagcgg aattgatgga aaacgaagaa attcgcgggc tgattattgg tgaaccgaat
     2041 tttgccggga ttgtcggctt aagcaatacc gcgtttacac tgcgtgtttc gttcaccacg
     2101 ctgccactca aacagtggac ggtacgcttt gccctcgaca gccaggtgaa aaaacatttc
     2161 gacctggtgg gcgttcgcgc gccagtgcag acttattagg tgctgcctac tccgggcgcg
     2221 accccggctg aaccgttacc gccgggggag ccaacgcttt aacgctggcg attgacaaaa
     2281 cggcggcgct gctcgtcgtt cataaaggtc caggcaataa agcgactctg cttttgcccc
     2341 tgggccatct ctttttttac caccttcacc gcgcccacgt cggtcagagc acgatacaac
     2401 ggcggtaagt tttcaccacg agataccagc gaggtaaacc acatcacctg cttcgcgaag
     2461 cctttgctct cttcaatcat ctttttgata aaggcgactt caccaccttc acaccacaac
     2521 tcctgttgct gaccaccaaa gttcagtgca tcgtctttgt tcagccccag gttacggcgt
     2581 ttacgctcac tacctgcccg cgctgcagcg gcggaatcgt ggaatggcgg gttacacaag
     2641 gtcgcgtcgt attgctcgtt tttatggatg atgccgttaa aaattgcccc actctctttt
     2701 tgccgacgca gacgaatggc gcggttaagc cccggattag cactgataat cgcctgcgca
     2761 ctgcttaacg cctggctgct ggtttcacta ccggtaaaac gccagccata ttcatgtacg
     2821 ccaatcagcg gataaataca gttcgcacca acgccgatat ccagaatgct ggcattcgct
     2881 ggaattgttc cgcttgcttc agccagtaaa tcggcaaggt gatgaatata atccgcccgg
     2941 ccgggtactg gtgggcagag aaaaccgtcg gggatatccc agttcgctac ggcgtaaaaa
     3001 tgggccagca acgccttatt gagcgccttc accgccagcg gattggcaaa gtctacgctt
     3061 tgctccccgg cgggtgtaag cgtgaggaat tgcctgagtt caggattgac ctgacaaagc
     3121 gtggcgagat cgtagcggct gtgatgacgg ttgcgcggat gcaaccccgg tttctgggcg
     3181 gacatagcat tctcctttaa gcagcggcgt aagatacccg cataacgcga cagggtaaat
     3241 atctggctgc gtttatcatt ccccaaaacc ttaacatggc tatggtttat ggcaattcat
     3301 cataaaaatc agcattatgc atgtcattga tttgtcttat tttgtaaaaa tatatcgttc
     3361 aaaaaataag cacatctctg tcaatttttt gcgtcatttg catcgcgcag gcgacctaca
     3421 cttatcaggc actacccgtt gtatttatga ggatgtcatt atgaaaaagt gcctcacact
     3481 actgattgcc accgtcctga gcagaatctc tctcacggct tatgccgcgc aaccgatgag
     3541 taacctggac agcggtcagc tacggcccgc ggtaccgttt cggcaactgg cgcatcaaac
     3601 ctaagcgatc tggaggataa actggcagaa aaagcgcgcg aacaaggcgc gaaaggttat
     3661 gtcattaatt ccgcaggcgg aaatgaccag atgttcggta ctgcaaccat ctacaaataa
     3721 ccccaccaac gtaactgcat tcgcctctgg atgcagtttt cgcctgtttt gtaatcaaaa
     3781 aacatcaaat atgaactcaa tgtaaataaa tgtatttctt tttcgcgcaa tgggtgatag
     3841 aaaatcgcgc caagtgataa tgtttatcaa aattattatc acttgcatga acactatcac
     3901 gggattaaca gtggcatcgc atccgcagag atgctttctc gtgacagtga aaatttcaac
     3961 atataagaaa aagtcacctg caaaatggaa aacaatcgca atttccctgc cagacaattt
     4021 cattcgctca cgttctttgc cggtctttgt attggcatca cgcctgtggc tcaggcactc
     4081 gccgccgaag ggcaaactaa cgcggatgac acgctggttg tcgaagcatc aacgccttcg
     4141 ctttatgcgc cacaacaatc tgccgatccg aaattctcgc gtccggtagc ggatactacc
     4201 cgcacgatga cggtgatttc tgaacaagtg attaaagatc agggcgcaac caaccttacc
     4261 gacgcgctca aaaacgtccc cggc
//
LOCUS       DAJVUY010000240         4205 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.243, whole genome shotgun sequence.
ACCESSION   DAJVUY010000240 DAJVUY010000000
VERSION     DAJVUY010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4205
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.243"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            114..617
                     /gene="yeaK"
                     /locus_tag="OQQ72_004010"
     CDS             114..617
                     /gene="yeaK"
                     /locus_tag="OQQ72_004010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HCS2013552.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(618..722)
                     /locus_tag="OQQ72_004011"
     CDS             complement(618..722)
                     /locus_tag="OQQ72_004011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013553.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            891..1337
                     /locus_tag="OQQ72_004012"
     CDS             891..1337
                     /locus_tag="OQQ72_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HCS2013554.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP
                     WIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG
                     VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            complement(1294..2115)
                     /gene="nimR"
                     /locus_tag="OQQ72_004013"
     CDS             complement(1294..2115)
                     /gene="nimR"
                     /locus_tag="OQQ72_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NimR"
                     /protein_id="HCS2013555.1"
                     /translation="MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLI
                     LALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTC
                     CTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI
                     RTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQG
                     LVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIAGLTTVSPQSAKPDPRQ"
     gene            2212..3408
                     /gene="nimT"
                     /locus_tag="OQQ72_004014"
     CDS             2212..3408
                     /gene="nimT"
                     /locus_tag="OQQ72_004014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HCS2013556.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3448..3795
                     /locus_tag="OQQ72_004015"
     CDS             3448..3795
                     /locus_tag="OQQ72_004015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HCS2013557.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3817..4071)
                     /gene="yoaF"
                     /locus_tag="OQQ72_004016"
     CDS             complement(3817..4071)
                     /gene="yoaF"
                     /locus_tag="OQQ72_004016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HCS2013558.1"
                     /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK
                     GGTLIPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          968 a         1065 c         1043 g         1129 t
ORIGIN      
        1 tacatgatgc gtataaagct tccgatgagc gtttatatgt caataagcag aacaaaaaca
       61 gccgttcatg ataaccttct gtggttgttt gcttgtaatc tcaggagcgt gaaatgactg
      121 aaatggctaa aggaagcgtg acgcatcagc ggttaatcgc tttattatca caagaaggtg
      181 ctaacttccg cgtcgttacc catgaagcgg taggtaaatg tgaagcggtg tcagaaattc
      241 gtggcaccgc tttaggccag ggagctaagg cactggtatg taaagtcaaa ggcaatggcg
      301 taaatcaaca tgttctggcg atcctcgctg ccgatcaaca ggccgatctg agccaacttg
      361 ccagccatat aggcggatta cgcgcttcgt tagccagccc tgctgaagtc gatgaactca
      421 caggctgtgt cttcggcgcg atcccccctt tcagcttcca tccaaaactc aaactggttg
      481 ccgaccctct actcttcgaa cgatttgatg aaatcgcctt caatgcaggg atgctggata
      541 aatccgttat tttgaaaacc acggattatt tgcgcattgc gcaaccagaa ctggtcaatt
      601 tccgccgcac tgcgtaacta gcctgtccgt tcaataagca gaacggacaa aaccagcaca
      661 acagcaatgg caaaaaacga tgacgtgata atcagtgtct cgacgaacat ttgatcgttc
      721 atagcatgcc cccgggagat agctgttttc acgttattgt tagcgtgcac aaatggcagt
      781 ttgatgacag ttcgcctgat ttttatgcaa aaaacgtaaa gattttctac ttccttcctg
      841 cagcaagcgt aaagtaagca ggcttattat tttttggcaa ggaaaccacg atgtttgatg
      901 tcactttgct gatcctgctc gggttagctg cgctgggctt tatcagtcat aacaccactg
      961 tcgccgtttc aattctggtg ttgatcattg tccgcgtcac accgttaagc acctttttcc
     1021 cgtggattga aaaacagggg ctaagtatcg ggataatcat tctgacgatt ggcgttatgg
     1081 cccccatcgc cagcgggacg ctaccgccct caaccttgat tcactcgttt ctgaactgga
     1141 aatcgctggt ggcaattgca gtaggcgtga ttgtctcctg gctgggtggg cgcggcgtga
     1201 ccttaatggg cagccagccg caactggtcg ccgggctgct ggtaggcact gttttaggcg
     1261 tggcgctgtt tcgcggcgta ccggtcggcc cgcttattgc cgcgggtctg gtttcgctga
     1321 ttgtggggaa acagtagtta atcccgcaat atatcggcct ggcgtttgcc ccaggccttt
     1381 cttaaacata gtaataaagg ccgttgttga atcatacccc agcgtatgag caactttctg
     1441 tacagtatcg cctttcacta atccctgaag tgccataatc agctgtaact gctgacgcca
     1501 ctggcgaaaa ctcaaccccg tctcttttac gatcagtcgc gcaagattgc gttcactcat
     1561 cgcaaaaaag ccagcccatt gccctaatga cccccactcg acgggccctt tcgccatcat
     1621 ctccaccatc gtgcggattt taggatgaga agaaacgggc aggtgcagct gttgttgtgg
     1681 ctgctgaggg agttcatcaa acaggacctg tattaatctg cgggtcatcg gctcagcacg
     1741 ctgagtcgtc gtcctgtttg ccagggttaa aatcaattcc cggcataagg gcgatatttt
     1801 caatgtgcaa catgttgtcg gcattgtcac tgcgctgggt tcgataaaca gaaaacagag
     1861 ttcagcgtta gctgtcactt gattgctatg ttccaccccg cccggtatcc aaaccgcata
     1921 ttgcggcggc accatccaca aagcattttc caccgtacag gtaattgcac catgtaatgc
     1981 tagtatcagc tgtcctttgc ggtgctgatg tacaggactg gttaactcat ccgttccggc
     2041 gtgaatacaa aatgcgaccg cggcttcatg gtgtcggtcg ggttcatagc cattgagatt
     2101 caacctgtgc atcattttgt ccgaatttag cgataatttg tcattttagc ttgattcaac
     2161 ataacaataa aaacggtaag gtacagcctc gtttgtaaca atgagaagca tatgacctgt
     2221 tcaacttcat taagcggcaa aaacaggatt gtccttatcg ctggcattct gatgattgcc
     2281 acaacattac gcgtcacctt taccggcgca gcaccgttac tggatacgat tcgttccgct
     2341 tactcgctga cgacagcgca aaccggctta ttgaccaccc tgccattatt ggcctttgcg
     2401 ctaatctcac ctttggccgc cccggtagcg cgacgttttg gtatggaacg tagcctgttt
     2461 gccgcgttac ttttgatctg tgctggtatc gcaattcgct ctctcccttc gccttactta
     2521 ttatttggcg gtacagcggt cattggcggt gggattgcat taggcaatgt cttactgcca
     2581 ggattaatta aacgcgattt ccctcattcc gtcgccagac ttaccggcgc atattccctg
     2641 acaatgggag ctgcggcggc acttggatcg gctatggtag tgccgctggc tttgaacggt
     2701 tttggctggc aaggcgcgtt gctcatgctg atgtgttttc ctctgctggc tcttttttta
     2761 tggctgccac agtggcgaag ccaacaacat gcaaatttga gtacctcgcg cgccttacat
     2821 actcggggta tctggcgttc gccgcttgcc tggcaggtca cattgtttct tgggagcaac
     2881 tcactggtct attacgtgat tattggctgg cttccggcga tcctcatcag tcacggctat
     2941 agcgaagcac aggcgggttc actgcatggt ttgctgcaac tagccacagc agctcccggt
     3001 ttgctgatcc ctcttttctt acatcatgtg aaagaccagc gtggtattgc agcgttcgtt
     3061 gccttgatgt gcgcagtggg cgctgttggg ctctgcttta tgccagcgca cgcgatcacc
     3121 tggactctgc ttttcggttt tggttccggc gcaacaatga tactggggtt gacgttcatt
     3181 ggtcttcggg caagttctgc gcatcaggcg gcggcactct cggggatggc acaatccgtc
     3241 gggtatttgc tggcagcctg tgggccgccg ctaatgggta aaatacacga tgctaacggt
     3301 aactggtccg taccactgat gggtgttgca atactttcac tactgatggc gattttcgga
     3361 ctttgcgccg ggagagacaa agaaattcgc tcatatccgg tgctatagtg acgtgacaaa
     3421 tcatgcgtga aagggagaac aaacacgatg aatattcagt gcaaacgcgt ttatgatccg
     3481 gctgaacaga gcgatggtta tcgcgtactg gtcgaccgcc tctggccgcg cggtatcaaa
     3541 aaaaccgatt tagcccttga tgagtgggat aaagaaatca cgccgtcaac ggaactgcgc
     3601 aaagcctttc acggcgaagt cgtcgatttt acaacctttc gcgagcaata tcttgcagaa
     3661 ctggcgcaac acgagcaaga aggaaagcgg ctggcggaca tcgccaaaaa acagccgctg
     3721 accctgctct acgcagcaaa aaacaccacg cagaaccatg cgctggtgct ggccgactgg
     3781 ctacgtagct tgtgatttta gtacagcatc cggcggttat ttttcaccag ccggatggtc
     3841 ccgtcgccac aatgcccatt catcaatcgt ttcaccgccc ggtaatttgc aattgttgct
     3901 gaccccttgc gctgtcgaca ctggaatgag cgtcccgccc ttctgctggc aatagaccga
     3961 cgccggattt gccataccaa tctgcggcgg tttaggtgct tctggctgag aaggggttga
     4021 acaaccagcc aggaccagca agcaaggcag aacaaaactg ataattttca tttattgatc
     4081 tcacatattt atccagactt agagtatcgc ggtatcgttt tgttttgcag cactattttt
     4141 attacattca ctcaaaacat attacgtctt gtttcatctt tgttgatgat gttttatcat
     4201 gcctg
//
LOCUS       DAJVUY010000241         4070 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.244, whole genome shotgun sequence.
ACCESSION   DAJVUY010000241 DAJVUY010000000
VERSION     DAJVUY010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.244"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..1046)
                     /locus_tag="OQQ72_004017"
     CDS             complement(<1..1046)
                     /locus_tag="OQQ72_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HCS2013559.1"
                     /translation="MREINMLRNISSCLFPHISKITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="OQQ72_004018"
     CDS             1537..1647
                     /locus_tag="OQQ72_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HCS2013560.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ72_004019"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ72_004019"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HCS2013561.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3915)
                     /locus_tag="OQQ72_004020"
                     /pseudo
     CDS             complement(2963..3915)
                     /locus_tag="OQQ72_004020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         1090 a          830 c          953 g         1197 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtaaatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattttg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat gtttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatatctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatatgatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagtgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggca gcacgaacgg
     3421 ctcgttgacc agtggggtaa aatcaatgga tgaatttgtg acgttgttca tgtttatgcc
     3481 aaagtctgat tcgttacaca gcaccgattc catgcaatta ttcgtgcctt gttccagaat
     3541 ccgcacttta atattgggat acagctcatt aaatttaccg attgccagcg gtaaaaaata
     3601 aaatactgcg gtcggaatac acgctaacgt caccatacca cgatgataag cattcatatc
     3661 acgaatatta aaaagcgttt catcgaattt ctttattaat tcccgcgcct ccgggagcaa
     3721 cctttttcct gcttttgtta acgtaacctt gcgagttgta cgctcaaata gttgaatatg
     3781 taaatcttcc tccatctttt ttattcttcg cgttaatgca ggttgcgtaa tattgagtaa
     3841 tttagcggca ttgttaaacg aactggactc tgccagtatg acaaatgcct tcatacttga
     3901 taattcatgc ttcattatta ctccggaaaa tggaagcgac gattttgggt ggctggccgt
     3961 taaaaatttt aactgcattt agccaactta aattaatgaa aaaatgttat taatcgttga
     4021 gctaaagtca ttagagatgc tttgccctta atgtaaccat atcgcaataa
//
LOCUS       DAJVUY010000242         4015 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.245, whole genome shotgun sequence.
ACCESSION   DAJVUY010000242 DAJVUY010000000
VERSION     DAJVUY010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4015
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.245"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..370)
                     /gene="exoX"
                     /locus_tag="OQQ72_004021"
     CDS             complement(<1..370)
                     /gene="exoX"
                     /locus_tag="OQQ72_004021"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS2013562.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKL"
     gene            complement(394..1050)
                     /locus_tag="OQQ72_004022"
     CDS             complement(394..1050)
                     /locus_tag="OQQ72_004022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS2013563.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLACDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            complement(1152..1382)
                     /gene="holE"
                     /locus_tag="OQQ72_004023"
     CDS             complement(1152..1382)
                     /gene="holE"
                     /locus_tag="OQQ72_004023"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HCS2013564.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            1521..1895
                     /gene="yobA"
                     /locus_tag="OQQ72_004024"
     CDS             1521..1895
                     /gene="yobA"
                     /locus_tag="OQQ72_004024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HCS2013565.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            1899..2766
                     /gene="copD"
                     /locus_tag="OQQ72_004025"
                     /pseudo
     CDS             1899..2766
                     /gene="copD"
                     /locus_tag="OQQ72_004025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
     gene            2779..3120
                     /locus_tag="OQQ72_004026"
     CDS             2779..3120
                     /locus_tag="OQQ72_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HCS2013566.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL
                     APFIERAEKLC"
     gene            complement(3502..>4015)
                     /locus_tag="OQQ72_004027"
     CDS             complement(3502..>4015)
                     /locus_tag="OQQ72_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001189081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS2013567.1"
                     /translation="REAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIR
                     QIKTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGL
                     TKKFVAARKLTGIQFSENPPTFHEVRSLAGRLYKETCGEEFAQRLLGHTSEKTTKMYL
                     DEREKTYLLL"
BASE COUNT         1007 a          966 c          977 g         1065 t
ORIGIN      
        1 tgagcttccg tgttttatat aacgccatat tgctgtactt gatccctggc cacaaacgac
       61 gggccagttt catagtgcaa atccactcac cgggcatctc aggcagtacg cggcggtcaa
      121 agctggcgtt gtgcgcgaca taccattcac taccgtaata gtgtgggatc acatcttcaa
      181 tccacggttt atcggcgacc atggcttcgg tgatgcgatg aatcgccatc gcttgtggac
      241 taataggacg atcggggcgc accaggtggc tcatggggtt gacgattttt ccgtcaatga
      301 catcaacaga ggcaatctca acgatccctc cctgcaaacc gcaggtttct gtatcgataa
      361 tgcgcaacat ggcatgctcc aggccgaaaa agcctagcgt aatggaatga tatcgccttg
      421 ccaaccctgt gatgaacgct gaccgactaa caataatgaa ccacgatcgg cgcgaacgat
      481 gagacgacca tattcatccc atagtgcact gttaccacgg gcatttgcca tcagcacggc
      541 aatcgagtac tgatgtgaaa aaaattgtaa gcgacgggcc gacgccagca ggtcgggttc
      601 tcccagacat tgccctgtag taaacagtga acaggtcggg tccatatcca taccttgcgg
      661 ttgttcatcg accaccgtga tggttctgga acgacggccc agacatgcac catgactctg
      721 atggtagatc ccaggcgttt ttcgccacgg tgcgaacacc gcaattccac gaataaagcg
      781 atcgttatat tcaacgggaa ggccggcaat gatggtcatt cgccaggtcg ttgcggcata
      841 acaaagcggg tctaacagtg agagatcggg tggggcagga agggcacgtc gcgaataatc
      901 acacgccagt aaagaaagcg atggaaaaac taacagctga cattgttgcc tggcggcggc
      961 cctcacaaac tccagatgat gagctacctg ttcggtgagt gaggttttac gaggctcata
     1021 ttgcgctgct gcaactttcc agaacgacat aatgacttcc ttttcaaaat gactgcaaat
     1081 tatgggtgcg gtttagaaaa tactcataat ttagcaggcg ttatgtaaga aagtgtaact
     1141 ctgtataagt tttatttaag tttgggctcg taaggtaaac gtgacagttt gaccgaagcc
     1201 aaacggtggg caataagcct ctcgcgaaac cagctgcgca aatgttcagg ctgttcacgt
     1261 tcaaccgctt cagcgatcac cggcatattg tagcgttctt taaatgccac cccggccgcc
     1321 gccaaatcga cattcacttt atccatttct gtttgatcca gtttagccag attcttcagc
     1381 attcttaatc tcctcatcat tcgcgggcaa aagttactaa gagtgagcca ggatggcaag
     1441 ccggaattga tgatcctcga ctcagacatt agacaaggtt atgctctgta aaaaagttat
     1501 tacaaaaagt aatagataat atggcttcaa ctgcacgctc ccttcgctac gcgctggcaa
     1561 tcctgaccac ttcgttggtg acaccttccg tctgggcaca tgcgcattta acgcatcagt
     1621 atcctgcggc aaacgcgcaa gtgacagctg caccgcaggc aatcacttta aacttctcgg
     1681 aaggtgttga aacaggattc agtggtgcaa aaatcacggg gccaaaaaac gaaaatatta
     1741 aaacattacc ggcgaagcga aatgagcagg accaaaagca actgattgtt ccactggccg
     1801 attcgctgaa acccggaacc tacaccgttg actggcatgt tgtttcggtg gacgggcata
     1861 aaacgaaagg acactacacc tttagcgtga aataaatcat gctggcgttt acctggatcg
     1921 cgctgcgatt tatccatttc acctcgctga tgctggtttt tggcttcgca atgtacggtg
     1981 cctggctggc ccccttgacg attcgtcgct tgctggcgaa gcgttttctg cgtttacaac
     2041 agcacgctgc cgtctggagt ttgatcagtg ccactgcaat gctcgccgtt cagggcgggt
     2101 tgatgggaac gggatggaca gatgtatttt cgccaaacat ttggcaggct gttttgcaaa
     2161 cgcagtttgg tggcgtctgg ttatggcaaa ttgttctcgc cctcgtaacg ttgcgccctt
     2221 atgcaaccgc ggaatatgcc acgtttgctg tttatgctca ctaccgcgca atttattctg
     2281 ctggcgggag tggggcatgc gacgctgaat gaaggggtaa cggcgaaaat ccatcagact
     2341 aatcacacga ttcacctgat ttgtgcggcg gcgtggtttg ggggattact gccggtgctc
     2401 tggtgtatgc aactcatcaa aggccgttgg cgacaccagg ctattcaggc gctgatgcgt
     2461 ttttcatggt gcgggcattt tgcggtgatc ggcgtactgg caagcggggt gcttagtgca
     2521 ttgttgatta ccggatttcc ccccacgctt acgacttact ggggccaact cttattgctc
     2581 aaagccatcc tggtgatgat tatggtggtc attgcgctgg ctaatcgtta tgttcttgta
     2641 ccgcgcatga ggcaggatga agatcgtgcg gcaccctggt ttgtgtggat gactaaactc
     2701 gaatgggcga taggtgcggt agtgctggtg atcatcagcc tgcttgcgac tctcgaacct
     2761 ttttgatgga ttacgaaaat gatgaaaaaa agtattctgg cgtttctgtt actcaccagt
     2821 tctgcagcgg cgctggctgc accgcaggtg attaccgtca gtcgttttga agtgggtaaa
     2881 gacaaatggg cgtttaatcg cgaagaggtg atgctgactt gccgaccggg taatgctttg
     2941 tatgttatta atccgagtac cctcgtgcag tatcctttaa acgatatcgc acaaaaggaa
     3001 gttgccagtg ggaagaccaa tgcccaaccc atttcggtga ttcagattga tgatcctaac
     3061 aatcccggcg aaaaaatgag tctggcaccg tttatagaac gagctgaaaa actctgttaa
     3121 ttacctaaaa tagccttttg atttccaata aaaaaaccgc ctcagttctt tcaccagaac
     3181 gggcggtttt aacatttcag ctgatgacca ccacgctttt tattgaccat tttgcacgca
     3241 aactggaaaa cctggcgtcg tcatctattc ttaaagggca aggcaactaa gcctgcatta
     3301 atgccaactt ttagcgcacg gctctctccc aagagccatt tccctggacc gaatacagga
     3361 atcgtattcg gtcttttttt aattgcattt gaaatcaatt agttgcaaat gtctccccga
     3421 aatttactcg aatttctgta ttccggtctt ttttggttat atcacaacca aaatacattt
     3481 aacaatccat ttacgttaaa atcagagcag taagtacgtt ttttctctct catcaagata
     3541 catttttgtt gtcttctccg atgtgtggcc aagtagacgc tgagcaaatt cttctccaca
     3601 tgtttctttg tacaatcgtc cagccaggct tctgacttcg tgaaaagttg gtgggttttc
     3661 actgaactgg atacctgtta attttctggc tgcgacaaat ttctttgtca ggccgtccgg
     3721 gtgaatgctg ccgtcagggc tgttttttct aatcccggca ctgattagat aatcccccct
     3781 acttaccatg cggcactgtt caactactgc accaagtcgt aaaccagcga caggaaggct
     3841 gagtgacagg gggatagcaa tcatcattcc tgtcttaatt tgcctgatgt ggagacgatc
     3901 atcataaata tcactgaacc gcatattcgt tatgtcttcg cgacgttgtc ctgttacaag
     3961 ggctaaatcc atagctaatg ggaaccatgc cggaagttga tctgctgcct ccctg
//
LOCUS       DAJVUY010000243         3950 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.246, whole genome shotgun sequence.
ACCESSION   DAJVUY010000243 DAJVUY010000000
VERSION     DAJVUY010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.246"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(464..655)
                     /locus_tag="OQQ72_004028"
     CDS             complement(464..655)
                     /locus_tag="OQQ72_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS2013568.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDH
                     ADELYRSCLARFGDDGENL"
     gene            720..1043
                     /locus_tag="OQQ72_004029"
     CDS             720..1043
                     /locus_tag="OQQ72_004029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS2013569.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            985..1743
                     /locus_tag="OQQ72_004030"
                     /pseudo
     CDS             985..1743
                     /locus_tag="OQQ72_004030"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1721..2251
                     /locus_tag="OQQ72_004031"
     CDS             1721..2251
                     /locus_tag="OQQ72_004031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS2013570.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVSKAVTSN
                     ETKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTV
                     SGGTLWYLGGMIQANLEEIRKQNESLEKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLVQE"
     gene            2258..2491
                     /locus_tag="OQQ72_004032"
     CDS             2258..2491
                     /locus_tag="OQQ72_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS2013571.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
     gene            complement(3039..3506)
                     /locus_tag="OQQ72_004033"
     CDS             complement(3039..3506)
                     /locus_tag="OQQ72_004033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013572.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
BASE COUNT          944 a          894 c         1171 g          941 t
ORIGIN      
        1 gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa cgccatcggc
       61 gcggccttct tcctgttcct ggtcttttgc tcacatgttc tttccggcgt tatcccctga
      121 ttctgtggat aaccgcattt cgtttttgag tgagtagata ccgctcgccg cagtcgaacg
      181 accgagcgta gcgagtcagt gagcgaggaa gcggaaaagc gcctggacgt gcattttctc
      241 cttacgcatc tgtgcggcat ttcacacccg gtatggcgca cttttcatac aatccgcatt
      301 gatgccgcat ggtgaagcca gtatacactc cgctatcgct acgtgactgg gtcatggctg
      361 cgccccgaca cccgctaaaa cccgctgacg cgccctgacg ggcttgtctg ctcccggcat
      421 ccgctcacag ataagctgtg accgtctccg ggagctgcat gcgtcagagg ttttcaccgt
      481 catccccgaa gcgagcgagg caactgcggt aaagctcatc ggcgtggtcg tgaagcgatt
      541 cacagatgtc tgcctgttca tccgcgtcca gttcgttgag cttctccagc agcgttaatg
      601 tctggcttct gataaagcgg gccatgttaa gggcggtttt ttcctgttta gtcactgatg
      661 cctccgtgta agggggattt ctgttcatgg gggtaatgat accgatgaaa cgcgagagga
      721 tgctcacgat acgggttact gatgatgaac atgctcgttt gctggaacgt tgtgagggta
      781 aacaactggc ggtatggatg cggcgggtct gcctggggga gccggttgcc cgttccggga
      841 ggctgccgac actggcaccg ccgttactgc gtcagctggc cgccatcggg aataacctga
      901 atcagacagc gaggaaggtg aacagcgggc agtggtcttc cggtgaccgg gttcaggtgg
      961 tggccgcact gatggccatc ggggatgagc tgcgccggct gcgtctggcc gtcagggaac
     1021 aggggacgcg ggatgatagt taagtttcat gccaggggaa aaggtggtgg cagtggtccg
     1081 gttgattacc tgctgggaag ggagcgtaac cgggaagggg caacggtgct tcagggtaat
     1141 ccggaagaag tccgggaact catcgatgcc acgccatttg cgaagaaata cacgtccggt
     1201 gttctctcgt tcgcggagaa ggcgctgcca gcgggaggac gtgaaaaagt gatggcgagt
     1261 tttgagcgtg tactgatgcc cggtctcgaa aaaaatcagt acagcatcct gtgggtggag
     1321 caccaggaca agggacggct tgagctgaat tttgtcattc cgaacatgga gctacagacc
     1381 ggaaaacgcc tccagccgta ctacgaccgg gcagacaggt cgagaattga tgcctggcag
     1441 acgctggtga atcaccatta cgggctgcat gacccgaacg ccccggagaa ccgccggacg
     1501 ctgactctcc ctgataacct gccggaaacg aaacaggcgc ttgctgagag cattacacgg
     1561 gggatagacg ctctttatca tgtcggggag ataaaagacc gtcaggatgt gattcaggcg
     1621 ctcacagagg cggggcttga agtggtcagg gtgacgcgaa gcagtatcag cattgcagac
     1681 ccgaacggcg ggaagaatat cagactgaaa ggagcattct atgagcaatc ttttacagac
     1741 gggcgcggag ttcgagaaaa agctgaaaga gagagccgaa tctacagaga aaatgctgaa
     1801 cgacgagttc aggaagctcg aagaatctgt aagcaaggct gtgacatcaa acgagacgaa
     1861 aatcaaagac gctatagccc tgttcacagc ttcgacagag gaatcactga aaaaacaccg
     1921 ggaaggggtg aaagaggcga tgatgcagca caggaaggac gtgttaaagc tggcagggaa
     1981 tacgggcatg atgttgctgg ggatggttat tttcctgttt accgtgagtg gcgggacgct
     2041 ctggtatctt ggcgggatga tacaggcgaa cctggaagaa atcaggaagc agaacgagag
     2101 tctggagaag ctgaacgcga agacatgggg cgtgcgttat cacgagggga gcaacggacg
     2161 ttttctggtg ttgcccgagg ggatgaaagc cgaaacgaac tggacgatgg aaaacgggaa
     2221 acagaatgcc gtaaggctgg tacaggagta acagagcatg acggagctgg aaagacattt
     2281 gctgaacgca ttagagcaac tgcaacagga ctatatgcag cggctgaacg aatgggagag
     2341 cgccttcgtg gaattgcaga aaatgttttc gcttacgcaa cgggacaacg cgatgctgaa
     2401 cgagcaggtc atgcagttga gtcagcaggt gcagcacttg agcgagcgga cagaacgctt
     2461 gagccagtta tacagcgaga acaggagata agggacgaac ggctgataca ggaatgcgaa
     2521 catgagttat ccctggagcg tgagcgccag ccggaaatac aggaacgcac actggatggt
     2581 ccttcactgg gatggtaatc agagacaggc taaaatgttg tcagcgcgtt tccggtgcat
     2641 tttttgggat aatggttggt tcgggggggc accgggaacg cgcttcagtc agaccttgct
     2701 gaaaacacag gaacgcgtta aaacgcatac gggcgcgatt ctggtgtgtc ttttgttgct
     2761 gtgttttgcc tctattgcca gatcgcgctc attcccctga acttctgttt tcccgctcag
     2821 gtccccgtct tcttcgcttc cgaaagcatg aaaaaaatcc gtttcagctg tctctggctg
     2881 gcaattcctg cgtgattcac atggctgcat agctatgcat gtggttaaaa tttaccgggt
     2941 gcgatcgcgg cagtttttcg ggtggtttgt tgccattttt acctgtctgc tgccgtgatc
     3001 gcgccgaacg cgtttcagcg gtgcgtacaa ttaagatatt acgttaaatt gtgagggaat
     3061 ggtccccata tactgacttt atcataggga tagggttggt agtgggtcga ttgggtttcg
     3121 gcattgtttc cgttaatgcc aattgcattt ttgtatttga tgcaacagaa ggcgtgagat
     3181 tctcctgggc ctggaaaggc taagtgttta gaattgatgg caaaatatct tccgtccgat
     3241 ttttgaagta gttgttgttt ggctgtctcc caaagggtgc tgttacaaac ttcttgaatt
     3301 tgtagttttt gcagggctct tattactgcg ttgtcatgtt ccaattcttt aggggagtgt
     3361 attattctct cttttaataa gctgtttacc acagggttta gttgttgtct aaagcacgca
     3421 gataatgcca ttgctacaca attttgttcc cgaggaagca tgtttggcgg ggtatgccgt
     3481 gtttgatgtg atatgtctat tctcatagaa ggtctctggc ttatagcatc aacaaatacg
     3541 gctataaaac aaaattttca tagagtgatt caagatcttc ttgagatcct tttttgcggc
     3601 gcgtaatctg ctgcctgcaa acaaaaaaac caccgctacc aacggtggtt tgtttgccgg
     3661 aatctagagc taccaactct ttcttccgaa ggtaactggc ttggtggagc acagatacca
     3721 aatgctgtcc ttctagtgta gccgcagtta ggccaccact tcaagaactc ttaatatctc
     3781 aatccacctt gtacagttac caatggctgc tgccagtggc gttaagtcgt gtcttaccgg
     3841 gttggactca agacgatagt taccggatga ggcgcagcgg tcgggctgaa cggggggttc
     3901 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc
//
LOCUS       DAJVUY010000244         3932 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.247, whole genome shotgun sequence.
ACCESSION   DAJVUY010000244 DAJVUY010000000
VERSION     DAJVUY010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.247"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..780
                     /gene="pgrR"
                     /locus_tag="OQQ72_004034"
     CDS             <1..780
                     /gene="pgrR"
                     /locus_tag="OQQ72_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator PgrR"
                     /protein_id="HCS2013573.1"
                     /translation="RIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALAS
                     LSELQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFD
                     AGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTS
                     GTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKL
                     IRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV"
     gene            1117..2730
                     /gene="mppA"
                     /locus_tag="OQQ72_004035"
     CDS             1117..2730
                     /gene="mppA"
                     /locus_tag="OQQ72_004035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide ABC transporter
                     substrate-binding protein MppA"
                     /protein_id="HCS2013574.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2781..3812)
                     /gene="ynaI"
                     /locus_tag="OQQ72_004036"
     CDS             complement(2781..3812)
                     /gene="ynaI"
                     /locus_tag="OQQ72_004036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HCS2013575.1"
                     /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA
                     VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE
                     KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG
                     KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN
                     SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV
                     YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD
                     NITPPEQGR"
BASE COUNT         1107 a          867 c          916 g         1042 t
ORIGIN      
        1 cgtatagaag aacgattggg attgcggctt ctgacgcgaa ccacgcgcag cgttgttcca
       61 actgaagcgg gcgagcatct tttgtctgtt cttggcccta tgttgcatga catagattca
      121 gccctggcat ccctgagcga gctgcagaac cgcccatccg ggacaatacg tattactact
      181 gtagaacatg cagcaaaaac gatattgtta ccagcaatgc gcacattcct gaaatcgcat
      241 cctgaaattg atattcagct caccattgat tatggtttga ccgatgtcgt ttctgaacgt
      301 tttgatgcag gcgtccgtct gggtggggag atggataaag atatgatcgc cattcgaatc
      361 gggccagata taccaatggc tattgttggc tcaccggatt atttttctcg ccgaagtgtt
      421 ccaacgtcag tgtcacaatt aatagatcat caggcaatta atttgtatct tcccacatcg
      481 ggtacagcaa atcgctggag attaatacgc ggtggacgtg aagttcgtgt tcgcatggaa
      541 ggtcagcttt tactgaatac gatagacctg atcattgatg ctgcaattga tgggcatgga
      601 ttggcgtatc taccttatga tcaggttgag cgggctatta aagaaaaaaa actgatacgt
      661 gttttggata aattcacacc agatttaccc ggttatcacc tgtactatcc acaccgtcga
      721 catgctggct cggcattctc attatttata gataggctga agtataaagg tgctgtttag
      781 cactacttgc tgatacatta atttaatttc tctcttaacg tattctcagt tcctttcaac
      841 gttttggtta ttttttattc ttcgtacaat ggcgacagat gctgattttg ataccgaaaa
      901 ctggtttgaa cgtgcgaagc ctgaacgtag tattcggtgt tctatgtgct ttgccgcatt
      961 ttggcgtcga ttatttacac taaatctgat ttaatatatt gatacataaa acattttatg
     1021 cttcctgtgt cacttttttg atggaagttg tttgcatttc tttaaggcga aacaaataat
     1081 tacgcatcaa ttttaatgtc ggttagaggg aaacttatga agcactctgt ttcagtcacg
     1141 tgttgtgcgc tgttggtcag cagcatttct ctttcgtatg ctgcagaagt tccgagcggc
     1201 acagtactgg cagagaagca ggagctggtg cgccacatta aagatgagcc tgcgtcgctg
     1261 gatcccgcta aagccgtggg cctgccagag attcaggtca ttcgcgatct gtttgaagga
     1321 ctggtgaatc agaacgagaa aggggagatt gtccccggcg ttgcgactca gtggaaaagt
     1381 aatgacaacc gtatctggac ttttaccctg cgcgataacg caaaatgggc ggatggcaca
     1441 ccggtaacgg cgcaagattt tgtctacagc tggcagcgtc tggtggaccc gaaaacgcta
     1501 tcgccatttg catggtttgc cgcgctggcg ggaatcaaca acgcacaggc gattattgat
     1561 ggtaaagcta cgcctgacca gcttggcgtc accgcagttg atgcccatac cttgaaaatt
     1621 cagcttgata aaccgttgcc gtggtttgtg aatttaaccg ctaactttgc cttcttcccg
     1681 gtgcaaaaag ccaacgtaga aagcggtaaa gagtggacga aacccggaaa tctgatcggc
     1741 aatggcgctt atgttcttaa agaacgcgta gtcaatgaaa aactggtcgt ggtaccgaat
     1801 acccattatt gggataacgc caaaacggta ctgcaaaaag tgaccttcct gccaattaat
     1861 caggaatccg cagccactaa gcgttacctc gcgggggata ttgatatcac cgaatccttc
     1921 ccgaaaaata tgtatcagaa gctgttgaag gatattccgg ggcaggttta tacgccgccg
     1981 cagctcggga cctattatta tgcgtttaac acgcaaaaag ggccgacggc agatcagcgc
     2041 gttcgcctgg cattaagtat gacgatagat cgccgcctga tgaccgaaaa agtgttggga
     2101 acgggcgaaa agccagcgtg gcattttaca ccagatgtta ccgccggatt tacgccggaa
     2161 ccttcgccgt ttgaacaaat gagtcaggaa gaactgaatg cgcaggcaaa aactttgttg
     2221 agcgcagctg gttatggtcc gcaaaaaccg ctgaagctga cgcttttgta taacacttca
     2281 gaaaaccatc aaaaaattgc gattgctgta gcatcgatgt ggaaaaagaa ccttggcgta
     2341 gatgttaaat tgcaaaatca ggaatggaaa acctatatcg atagccgtaa caccggcaat
     2401 tttgatgtta tccgcgcctc atgggtgggg gattataatg aaccctccac tttcctgaca
     2461 ttattaacgt caacgcattc aggaaatatt tcacgcttta acaatccggc atacgacaaa
     2521 gttctggccc aggcatcgac ggaaaatacc gttaaagcgc gtaatgccga ttacaacgcg
     2581 gcagaaaaaa tcctcatgga gcaagcaccg attgcaccaa tttatcaata taccaatgga
     2641 cgattaatca agccgtggct gaaaggttat cccattaata acccggaaga tgtggcgtac
     2701 agccggatta tgtatattgt gaagcattga tgtgatggga actggcgtta cccttgtgga
     2761 taacgccagt gatgtctgat ttagcgcccc tgttccggcg gtgtaatgtt atccatatac
     2821 agcgtctggc tggggaaggc aaagtccgcg ccgtgtgact gcacaatatc gataatcttc
     2881 aaataaacgt cttgttgtgc agcaagccat tcagcccata ccgtggtttt ggtaaagcaa
     2941 taaaccataa tattcaatga cgagtcggca aactggttga aataaaccag taaggtttgt
     3001 cgctggtcga tggccgggtg atttttcagc atctcacgta cggcttcgac aataacgccc
     3061 acttttgccg catcctcata acgtaaacca atggtcgtgg taatgcggcg gttggtcatt
     3121 cgtcctgggt tttctacgct gatcgacgaa aacagcgagt tcggtacgta caatggacga
     3181 ttatcaaagg tcgtaatttt ggtaattcgc cagccaattt ccgctactgt accttcgata
     3241 tttctgtccg gtgaacggat ccagtcgcca atactgaaag gacggtcgaa atagagcatg
     3301 atcccggaaa agaaattact cagaatatct ttaccggcca taccgacagc cagaccacca
     3361 ataccaccaa aggtcagcaa gccagaaagg ctcatgccga aatgttcgcc ataaagcaga
     3421 acaagcacca caataatggt gattttgata atgcgcgaca taatccgcgc actggtgata
     3481 tcgcgacctt ttttaatctg ctgtttttca aactgattaa tcagcaaaaa tagcttaatc
     3541 gtcagaataa ccgcaatcag ggacgtacag ataaaatcga taacgcctgg ggtgataaat
     3601 ttgagtttat agttttctat aacataatta ataatgctac caacagcact gataattatg
     3661 gtgtagatta aaaattgcac cgcatggaat aaaaaacctt ttcttttacg atttccgcgg
     3721 cgaaaccaaa agctcatcag aatcaatgct gcgcagctac cgaaaataat gaccagatta
     3781 agcgcattat ttgtaaacag ttcagcgatc attgttttat caggctcctc cagataattg
     3841 tcgtcatgcc ggaaccccct ggcggggcta ttttaccgcg acaattcatt cagatcatca
     3901 atagtcaggg aaggaagtag caacattagc ta
//
LOCUS       DAJVUY010000245         3910 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.248, whole genome shotgun sequence.
ACCESSION   DAJVUY010000245 DAJVUY010000000
VERSION     DAJVUY010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.248"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(311..730)
                     /locus_tag="OQQ72_004037"
     CDS             complement(311..730)
                     /locus_tag="OQQ72_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309968.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013576.1"
                     /translation="MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAV
                     SKWFNGETIPRREKLRELATLIGTTPTYLLGEDTEESGQVRFYQELNPRQKIIIDLLD
                     ELPDSETDELLKTLEEKKQKYNAIYEELARKKKQKAS"
     gene            810..1064
                     /locus_tag="OQQ72_004038"
     CDS             810..1064
                     /locus_tag="OQQ72_004038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS2013577.1"
                     /translation="MNQKTLEDVIKTVRVAVVADVCGVSQRAIYKWMDNGKLPRTEYT
                     GETNYAEKIALASNGLFSADAILTIGRNKTTTKKLMGVDS"
     gene            1061..1486
                     /locus_tag="OQQ72_004039"
     CDS             1061..1486
                     /locus_tag="OQQ72_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS2013578.1"
                     /translation="MKIKHEHIRMAMNAWAHPDGEKVPAAKITKAYFELGMTFPELYD
                     DSHPEALARNTQKIFRWVEKDTPDALKKIQALLPAIEKAMPPLLVARMRSHSSAYFRE
                     LVETRERLVRDADDFVAVAIAGFNQMNRGGPAGNIVAVH"
     gene            1558..2628
                     /locus_tag="OQQ72_004040"
     CDS             1558..2628
                     /locus_tag="OQQ72_004040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001736248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage replisome organizer"
                     /protein_id="HCS2013579.1"
                     /translation="MANAWLRLWHDMPNDPKWRTIARVSGQPIATVMAVYIHLLVSAS
                     RNVTRGHIDVTTEDLASALDVTEEVIDSILQTMQGRVLDGDLITGWEKRQVLKEDNGN
                     ISQTAKSPAERKRAQRERERKREQNGDCHGASRYVTHMSRRVTTDKDTDKDTDQEDQN
                     TMVHGVKNATNQAGDVQTVNPGQPAGTTPEADSAYALKADSGAVQQAMTASPEQSHQL
                     QQPEADSAIQREADRVVPENTGQSVGRVDYPDVFEQVWREYPLRAGANPKKSAFSAWK
                     ARLREGVPPEAMLDGVRRYARYLAATGKTGTEFVQRATTFFGPDRNFENPWLLPVSGT
                     NNQRCVNHISEPDNEIPPGFRG"
     gene            2669..3091
                     /locus_tag="OQQ72_004041"
     CDS             2669..3091
                     /locus_tag="OQQ72_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF977 family protein"
                     /protein_id="HCS2013580.1"
                     /translation="MAKVFTQEEREKIKGQVLELVRQSGRETLRQLEAKTGATRYLMS
                     VLARELVASGDVYNSGYGLFPSEQARKDWQNARKKLSRAKLKKPSAVDPDLIWSLPDG
                     EIRRYDSRLNIICRECRKSEVMQRILSFYQGNFQEVMA"
     gene            3088..3393
                     /locus_tag="OQQ72_004042"
     CDS             3088..3393
                     /locus_tag="OQQ72_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001266129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HCS2013581.1"
                     /translation="MRVRVYIAGPMTGYKNFNREAFHNAEEELKREGHTVLNPAVLPD
                     GLTQPQYMDICMAMIRCVDAIYMLKGWQRSAGAKAELALAEKLGHAVIFQETASVQD"
     gene            3380..3835
                     /locus_tag="OQQ72_004043"
     CDS             3380..3835
                     /locus_tag="OQQ72_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000335116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS2013582.1"
                     /translation="MCKTNYQALRERYSPIQVPECPVCGDEMSIQRIFSRTHIVYACT
                     GEGDDGYFKTGRTFADEHYLKSRVTVVDVSAPDVLALLKELEVKDKRIAELTDALTQM
                     INAHKTTIRFGHERITECGGDCDSPEKMISENPDIRMAEAVLRAGIKTE"
BASE COUNT         1069 a          842 c         1051 g          948 t
ORIGIN      
        1 cgatagtatc catgctgacc tcatttcccc ttaacgccgg ggtagcggaa caaaaacctg
       61 ctgcatagtt attaaagttg aaccctgccg tcatgttctt acgcctcggg ctggctactt
      121 aacccctgac cactgcctgg taactcgaag tattgccctg cattctgtgg ggcggggtgg
      181 gtggcaggta tataatgtac tttgcgttca ttgttgtaaa gtgcttatgg tacattttgt
      241 gtgtaaaaaa atgagatggg ataaagtgaa gcacaaaccc ggaggaaggc gctaccggat
      301 ttatgctggt ttaagaggct ttttgttttt tctttcgtgc taactcttcg taaattgcat
      361 tgtacttctg ttttttctct tcaagagttt ttaaaagttc atctgtctca ctgtcaggga
      421 gctcgtccag aaggtcaatg atgatttttt gtcttggatt taactcctga tagaaacgta
      481 cctgtccact ttcttctgta tcctctccca aaagataggt tggtgttgtt cctattagtg
      541 ttgctaattc ccttaatttc tcccggcgag gaattgtttc gccattaaac catttgctaa
      601 ccgcttttgg tgttaatttc attcgacggg caatttctgc ctgccttcca tgttgttcat
      661 aaccagcgtt ttcacaggct agcgcaagcc tactggcgaa ctctttacgc gctttatctt
      721 catgaaccat aagttcaatg atattcgctc ttgaatgtac tgtcagttct gttatggcat
      781 gtactcaaag ttcacattgt gagggtgata tgaaccagaa aacacttgaa gatgtaatca
      841 aaactgttcg cgttgctgtt gtggccgacg tttgtggtgt cagccaaaga gcaatctata
      901 aatggatgga taacggaaaa ttgcctcgca cagaatatac cggcgaaaca aattacgctg
      961 aaaaaatcgc tcttgcatca aacggattat tttctgccga tgcaatttta actattggca
     1021 ggaataaaac tactacgaaa aagctgatgg gagttgattc atgaaaatca agcatgaaca
     1081 catccgcatg gcgatgaatg cctgggcgca tccggacggc gaaaaagtac cggctgcgaa
     1141 aattaccaaa gcgtatttcg agctgggaat gacgttcccg gaactgtatg acgacagcca
     1201 tccggaagcc ctggctcgca atactcagaa aattttccgc tgggtggaga aagacacccc
     1261 tgatgcgctt aaaaaaattc aggcgttgtt accagctatc gaaaaagcaa tgccacctct
     1321 gctggtggcc cgaatgcgca gccatagctc agcctatttt cgggaactag tggagacgcg
     1381 ggaacgactg gtgagagacg ctgatgattt tgtcgcagtg gcgatcgctg gtttcaacca
     1441 gatgaatcgt ggtggccctg caggaaatat tgtggctgtg cattgactcg caatattcat
     1501 accggatcac ttccggcaat ttgtgagtaa aaagattcgg tatcaaaaga ggtgagtatg
     1561 gctaacgcct ggctcagatt atggcatgac atgccaaatg accctaagtg gcgaacaatt
     1621 gccagggtgt cagggcagcc aattgcaaca gtgatggcag tgtatatcca cctcctggtg
     1681 agcgcgtcac gaaatgtcac gcgaggtcac attgatgtca cgacagaaga tttggcaagt
     1741 gcgctcgacg tgacagaaga ggtaattgat tcaattttgc agacgatgca ggggcgggta
     1801 cttgatggtg atttaatcac tggatgggaa aaacgccagg tgctgaaaga ggacaacggc
     1861 aatatttcgc aaaccgcaaa atctcctgca gagcgcaaga gggcgcagcg agagagggaa
     1921 agaaagcggg aacaaaatgg cgattgtcac ggcgcgtcac gatatgtcac gcacatgtca
     1981 cgacgagtca cgacagataa agatacagat aaagatacag atcaagaaga tcaaaacact
     2041 atggtccatg gcgtaaaaaa cgccacgaac caggcagggg atgttcagac cgtcaatcct
     2101 ggtcagccag caggcacgac accggaagcc gattcagcgt atgcgctgaa agccgattcg
     2161 ggcgctgtgc agcaggcgat gaccgcaagt ccggagcaat cacaccaact gcagcagcct
     2221 gaagccgatt ccgccattca gcgggaagcc gatcgggtag tcccggaaaa caccgggcag
     2281 tctgtgggac gagtggatta tccggatgtg ttcgaacagg tctggcggga gtacccgttg
     2341 cgtgccgggg caaacccgaa gaaatccgct ttcagtgcct ggaaggccag attacgcgag
     2401 ggggtgccac cagaggccat gctggatggc gtgaggcgtt acgcaagata cctggcggct
     2461 accgggaaaa cgggaacgga atttgttcag cgagcgacga cgttttttgg accggaccgg
     2521 aattttgaga acccctggtt gctcccggta agcggcacga acaaccagcg ttgtgtgaat
     2581 catatttctg aaccggataa cgaaattccg ccgggcttca gggggtaagt gttaatttct
     2641 ggtcatgagg taattttcag gagggcttgt ggcaaaagtt tttacacaag aagagcggga
     2701 aaaaattaaa gggcaggttc ttgaactcgt acgccagagt gggcgcgaga cgttacgaca
     2761 actggaagct aaaactgggg caacaagata tctgatgagc gttctggcca gagagctggt
     2821 tgccagtggc gatgtataca actctggtta cgggttattc ccgtctgaac aggcgcgtaa
     2881 ggactggcaa aatgcccgta aaaagctctc aagggcaaag ctgaagaaac catctgcggt
     2941 tgatccggac cttatctggt cattacctga cggagaaata cgtcgctacg acagtcgcct
     3001 aaacataatc tgtcgcgagt gccggaagag cgaagttatg cagcgcatat tgtcgtttta
     3061 tcagggtaat tttcaggagg tgatggcgtg agggtgagag tctatatcgc cggtccaatg
     3121 accgggtata aaaatttcaa ccgtgaggcg tttcacaatg cggaagagga actgaaacgg
     3181 gaagggcata ccgtcttaaa cccggcagta cttccggacg ggctgacaca gccgcagtac
     3241 atggatatct gcatggcgat gattcgttgt gtggatgcga tttacatgct gaaaggctgg
     3301 cagcggtcag caggcgctaa ggcagaactg gcgctggcgg agaaactggg gcatgcggtg
     3361 atttttcagg agacagccag tgtgcaagac taattaccag gcattacgtg aacgttattc
     3421 accaattcag gtgccggaat gtcctgtttg tggcgatgaa atgtcgatac agcgcatatt
     3481 ttccagaacg catattgtgt atgcctgcac aggtgagggg gatgatggat attttaaaac
     3541 tggtcgaact tttgcggatg agcattacct gaaatcgcgc gtaaccgtcg ttgatgttag
     3601 cgctcctgac gtactggctt tactgaaaga gctggaagtt aaagacaaac gcattgcaga
     3661 attgacagat gcgcttacac aaatgattaa tgcgcacaaa accacaattc gttttggtca
     3721 tgaacgcata actgaatgtg gtggtgattg cgactcgccg gaaaagatga tttcagaaaa
     3781 tccggatatc agaatggcag aggctgtttt gagagcagga ataaaaactg aataattaaa
     3841 tttagcacag caaataaaat ttaatcctta accggaggga tttctgcacc ctcagaacat
     3901 caggaggccg
//
LOCUS       DAJVUY010000246         3866 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.249, whole genome shotgun sequence.
ACCESSION   DAJVUY010000246 DAJVUY010000000
VERSION     DAJVUY010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.249"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            183..1955
                     /gene="aspS"
                     /locus_tag="OQQ72_004044"
     CDS             183..1955
                     /gene="aspS"
                     /locus_tag="OQQ72_004044"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HCS2013583.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2073..2525
                     /gene="nudB"
                     /locus_tag="OQQ72_004045"
     CDS             2073..2525
                     /gene="nudB"
                     /locus_tag="OQQ72_004045"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HCS2013584.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDSQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2554..3294
                     /locus_tag="OQQ72_004046"
     CDS             2554..3294
                     /locus_tag="OQQ72_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS2013585.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVITFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3329..3850
                     /gene="ruvC"
                     /locus_tag="OQQ72_004047"
     CDS             3329..3850
                     /gene="ruvC"
                     /locus_tag="OQQ72_004047"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCS2013586.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT          945 a          951 c         1108 g          862 t
ORIGIN      
        1 tttcaggccc gatataaagt ggtaacgagg cgttccagcg cgggctaggc tcttacggtg
       61 cggcagaatt tccagtataa tagccgcctt ttttcattca gttgtgacat acagctaacg
      121 ctgcgacttg gtcacctgcg cagcaggggg catccgccgg cagctaagtt aagggatatc
      181 tcatgcgtac agaatattgt ggacagctcc gtttgtccca cgtggggcag caggtgactc
      241 tgtgtggttg ggtcaaccgt cgtcgtgatc ttggtagcct gatcttcatc gatatgcgcg
      301 accgcgaagg tatcgtgcag gtatttttcg atccggatcg tgcggacgcg ttaaagctgg
      361 cctctgaact gcgtaatgag ttctgcattc aggtcacggg caccgtacgt gcgcgtgacg
      421 aaaaaaatat taaccgcgat atggcgaccg gcgaaatcga agtgctggcg tcctcgctga
      481 ctatcatcaa ccgcgcagat gttctgccgc ttgactctaa ccacgtcaac accgaagaag
      541 cgcgtctgaa ataccgctac ctcgacctgc gtcgtccgga aatggctcag cgcctgaaaa
      601 cccgcgctaa aatcaccagc ctggtgcgcc gttttatgga tgaccacggc ttcctcgaca
      661 tcgaaactcc gatgctgacc aaagccacgc cggaaggcgc gcgtgactac ctggtgcctt
      721 ctcgtgtgca caaaggtaaa ttctacgcac tgccgcaatc cccacagttg ttcaaacagc
      781 tgctgatgat gtccggtttt gaccgttact atcagatcgt taaatgcttc cgtgacgaag
      841 acctgcgcgc tgatcgtcag cctgagttta ctcagatcga tgtggaaact tctttcatga
      901 ccgcgccgca agtgcgtgaa gtgatggaag cgctggtgcg tcatttgtgg ctggaagtga
      961 agggcgtgga tctgggcgat ttcccggtaa tgacctttgc ggaagcagaa cgccgttatg
     1021 gttctgataa accggatctg cgtaacccga tggaactgac cgacgttgcc gatctgctga
     1081 aatctgttga gtttgcagta tttgcggggc cggcgaacga tccgaaaggc cgtgttgccg
     1141 ctctacgtgt tccgggtggc gcatcgctga cccgtaagca gatcgacgaa tacggtaact
     1201 tcgttaaaat ctacggcgcg aaaggtctgg cttacatcaa agttaacgaa cgcgcgaaag
     1261 gtctggaagg tatcaacagc ccggtagcga agttccttaa tgcagaaatc atcgaagcca
     1321 tcctggatcg tactgccgcg caagatggcg atatgatttt cttcggtgcc gacaacaaga
     1381 aaattgttgc cgacgcgatg ggcgcactgc gcctgaaagt gggtaaagac cttggtctga
     1441 ccgacgaaag caaatgggca ccgctgtggg ttatcgactt cccgatgttt gaagacgacg
     1501 gtgaaggcgg cctgacggca atgcaccatc cgttcacctc accgaaagac atgactgctg
     1561 cagaactgaa agctgcaccg gaaaatgcgg tggcgaacgc ttacgatatg gtcatcaatg
     1621 gttacgaagt gggcggtggt tcagtacgta tccataatgg tgatatgcag cagacggtgt
     1681 ttggtattct gggtatcaac gaagaggaac agcgcgagaa attcggcttc ctgctcgacg
     1741 ccctgaaata cggtactccg ccgcacgcag gtctggcatt cggtcttgac cgtctgacca
     1801 tgctgctgac tggcaccgac aatatccgtg acgttatcgc cttcccgaaa accacggcgg
     1861 cagcgtgtct gatgactgaa gcaccgagct ttgctaaccc gactgcactg gctgagctga
     1921 gcattcaggt tgtgaagaag gcagagaata actgatatga ctcaaataca cgaaatcatt
     1981 cgcgttgcat caaggcggca attgagtgaa ctcccatgag catagataac tatgtgaatg
     2041 ggatgagcga aggcagtcaa cgaagaggca gcgtgaagga taaagtgtat aagcgtcccg
     2101 tttcgatctt agtggtcatc tatgcacaag atacgaaacg ggtgctgatg ttgcagcggc
     2161 gtgacgatcc cgatttctgg cagtcggtaa ccggcagcgt ggaagagggt gaaaccgcgc
     2221 cgcaagctgc catgcgcgaa gtaaaggaag aggtcaccat tgatgttgtc gctgaacaac
     2281 tgaccttaat tgacagtcag cgcacggtag agtttgaaat tttttcacat ttacgtcatc
     2341 gctatgcgcc gggcgtgacg cgtaatacgg aatcatggtt ctgtcttgcg cttccgcacg
     2401 agcggcagat cgttttcact gaacatctgg cttacaagtg gcttgatgcg cctgctgcgg
     2461 cggcgctcac taagtcctgg agcaaccggc aggcgattga acagtttgta attaacgctg
     2521 cctgaacagg cagggctatc tggagatatt tttatggcag gtcatagtaa atgggccaac
     2581 accagacatc gtaaagctgc gcaggatgct aagcgcggta aaatcttcac taaaatcatt
     2641 cgtgagctgg taaccgcggc taagctgggc ggtggcgatc cggacgctaa cccgcgtctg
     2701 cgtgcggcgg tggataaagc actgtctaac aacatgaccc gtgacacact gaaccgcgca
     2761 attgcacgtg gtgtgggcgg tgatgatgat gcaaacatgg aaaccatcat ctacgaaggt
     2821 tacggtcctg gcggcacggc aatcatgatt gaatgtctgt ctgacaaccg caaccgtacc
     2881 gttgctgaag tgcgtcatgc attcagcaaa tgtggcggta acctcggtac agatggttcc
     2941 gtagcctatc tgttcagcaa aaaaggcgtg atcaccttcg agaaaggcga tgaagacacc
     3001 atcatggaag cagctctgga agcaggtgct gaagacgttg tgacctatga tgacggcgcg
     3061 attgatgtct acactgcatg ggaagaaatg ggtaaagtgc gcgacgctct ggaagcggca
     3121 ggtctgaaag cagacagcgc ggaagtttcc atgatcccgt ccaccaaagc tgatatggat
     3181 gcagaaaccg caccgaaact gatgcgtctg atcgatatgc tggaagattg cgacgacgtg
     3241 caggaagttt accataacgg tgaaatctct gatgagattg cagcgactct ctgatgaggc
     3301 ctgctaaaca gcaaaacgga gacgcgtgat ggctattatt ctcggcattg acccgggttc
     3361 gcgcgtgacc ggctatggcg tcatccgcca ggtaggcagg caactgtcct acctgggtag
     3421 cggatgcata cgcaccaagg tggatgattt accgtctcgt ctgaagctca tctatgcggg
     3481 cgtgacggaa atcatcaccc agttccagcc agattatttc gccattgaac aagtctttat
     3541 ggccaaaaat gccgactcgg ctctgaaact ggggcaggcg cgcggcgtgg cgattgtggc
     3601 ggcggtgaat caggaattgc cggtatttga atatgcggca cgtcaggtaa agcaaacggt
     3661 ggtaggtatt ggtagtgccg aaaaaagtca ggtgcagcat atggtccgca ccttgctgaa
     3721 actgcccgct aatccacagg cggatgccgc cgatgcgtta gctatcgcga ttacccattg
     3781 tcacgtcagc cagaatgcaa tgcagatgag cgaatcgcgg ctgaacctgg cgagagggcg
     3841 actgcgttaa gttataccgc ctcggt
//
LOCUS       DAJVUY010000247         3851 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.250, whole genome shotgun sequence.
ACCESSION   DAJVUY010000247 DAJVUY010000000
VERSION     DAJVUY010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.250"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..439
                     /locus_tag="OQQ72_004048"
     CDS             <1..439
                     /locus_tag="OQQ72_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS2013587.1"
                     /translation="FTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVR
                     ISIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIA
                     EGVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE"
     gene            447..1775
                     /locus_tag="OQQ72_004049"
     CDS             447..1775
                     /locus_tag="OQQ72_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS2013588.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGSYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ72_004050"
     CDS             complement(1822..3147)
                     /gene="rimO"
                     /locus_tag="OQQ72_004050"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCS2013589.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ72_004051"
     CDS             3360..3743
                     /gene="bssR"
                     /locus_tag="OQQ72_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HCS2013590.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
BASE COUNT         1006 a          857 c          950 g         1038 t
ORIGIN      
        1 ttttaccacc atcatgaaag aaaatggcct gaaggcgaac agcctctgtg ttgagatcac
       61 tgaaaccgtg atcgagcgaa ttaatgaaca tttttatctc aatattgaac aactgcgtaa
      121 acaaggggta cggatatcga ttgatgactt tggcaccggt ttgtcaaacc tgaaacgttt
      181 ttatgaaatt aatccagaca gcataaaggt ggactcgcaa tttaccggcg atattttcgg
      241 tactgcggga aaaattgtgc gcattatttt cgatctggca cgctataacc ggatcccggt
      301 gattgcggaa ggcgtagaga gcgaagacgt tgcacgcgaa ttaattaaat taggatgtgt
      361 tcaggctcag gggtatctgt accagaaacc tatgccattc tccgcctggg ataaaagtgg
      421 aaaattagta aaagagtagt ttacgtatgt ccagaatcaa taagttcgta cttacagtca
      481 gtctgctgat ttttatcatg atttcagcag ttgcctgcgg gatctacact caaatggtaa
      541 aggaacgggt gtatagcctg aaacagtccg ttattgatac tgcttttgcg gtggcaaata
      601 ttgctgaata tcggcgtagc gtggcaattg atcttatcaa cacgctaaat cccactgagg
      661 aacagctgtt ggttggtttg cgcacagctt acgccgactc ggtttccccc tcttatttgt
      721 acgatgtcgg tccttatctg atttccagtg acgaatgtat tcaggtaaag gagttcgaga
      781 aaaattattg tgcagatatt atgcaggttg tgaagtatcg acatgtcaaa aatacagggt
      841 ttatctcttt tgacggtaaa accttcgtct attacctcta tccggtaact cacaatcgta
      901 gtctgatatt tttgcttggt ctggagcgtt tttctttact gtcaaaatcg ctggcgatgg
      961 acagcgagaa cctgatgttc tctctattta agaacggtaa accggtgacc ggtgatgaat
     1021 ataatgctaa aaacgccatc ttcaccgttt cggaagcgat ggagcacttc gcctatttgc
     1081 cgaccggatt gtacgtattt gcgtataaaa aagatgttta tttgcgggtc tgtacattga
     1141 ttattttctt tgccgcattg gtggctgtga tatcgggtgc cagttgcctc tatctggtac
     1201 gcagagtgat taatcgtggt attgtggaga aagaagccat cattaataac cattttgaac
     1261 gcgtactgga tggcgggctt ttcttttcgg ctgccgatgt caaaaaactc tacagtatgt
     1321 ataactcggc gttcctggac gacctgacca aagcaatggg cagaaaatcc tttgacgaag
     1381 atttaaaagc gctgccggaa aaaggcagtt atttgtgcct gtttgacgtc gataaattca
     1441 aaaacattaa cgacaccttc ggtcatttgc tgggcgatga agtgttgatg aaagtggtga
     1501 aaatccttaa atcacagatc ccggtagata aaggtaaaat ctaccgcttc ggcggtgacg
     1561 aatttgcggt gatttatacg ggtggaacgc tggaagagtt gctatcgatt ctaaaagaaa
     1621 tcgttcattt ccaggtggga agcattaatt taagtaccag tatcggtgta gcgcattcaa
     1681 atgaatgtac caccgtcgaa cgcttgaaaa tgctggcgga tgagcggctg tataagagta
     1741 agaaaaacgg cagggctcag attagctggc agtaatcatt attcgcaggc cggacaaatg
     1801 attttgcccg gcctgaatta attaaacccg gctaccccac aaatcgtact catcggcgtg
     1861 ctcgactttc acacgcagga tatcacccgg cttaacgttg gtttcaccat tgagataaac
     1921 cgcgccgtcg atttccggtg catctgccat gctgcgacca atcgcgcctt cttcgtccac
     1981 ttcgtcgata atcaccagaa tttcacggcc cactttctct tgcaggcgct cggcggaaat
     2041 ctgctgctgc agctgcatga aacggttcca gcgttcttct ttaacttctt ccggaacctg
     2101 gtcaggcagg gcattggcgt ctgcaccttc aaccgggctg tatttaaagc agccaacgcg
     2161 atccagacgc gcttctttca ggaagtcgag tagcatctgg aaatcttctt ctgtctcgcc
     2221 agggaagccg acaataaagg ttgagcgtag ggtcagttcc gggcagattt cgcgccactg
     2281 tttgatgcgc gccagttggc gatctacaga acccggacgc ttcatcagtt tgagaatgcg
     2341 cgggctggcg tgctgcaacg gaatgtccag atacggcagg attttgcctt ctgccatcag
     2401 tgggatgacg tcgtccacat gcggataagg gtaaacgtag tgcagacgtg tccagatccc
     2461 cagtttcgat aactgttcgc acaggctgac catgctggtt tttaccggct cgccgttgtg
     2521 gaagccagta cgatgtttaa catcaacgcc ataggcggaa gtatcctgcg agatcaccag
     2581 aatctcttta acgcccgcat ctaccagacg tttcgcttca cttaacactt cgccaatcgg
     2641 acggctcacc aggtcgccgc gcatagacgg aataatgcag aaggtgcagc ggtgattaca
     2701 gccttccgaa attttcagat aggcataatg acgcggcgtc agtttcacac cttgttctgg
     2761 caccaggctc aggaatgggt tgtgtttcgg ttttggcacg tagtgatgaa cgtgctccag
     2821 aacctgctca tagctatgag gcccggtgat ttccagcact ttcgggtgga cttcgcggat
     2881 ctgatcttct tttgccccca gacaaccggt cacaattacc ttgccgtttt cattcaacgc
     2941 ttcaccaatg gcttccagtg attcttgtac cgcgctgtca ataaagccgc aggtgttgac
     3001 gatcaccatg tccgcatcgt catagctcgg taccacgtca taaccttcag tgcggagttc
     3061 ggtgagaata cgctctgaat cgacaaggtt tttcggacag ccaagggaaa caaagccgat
     3121 tttcggctgg ggagttactt tgctcatagc ttaaaaaata ttcagttaca ggaaaggtca
     3181 gggcagggat tctacagagt tctggataaa atttgtatcg caatctcatt cgctggcgga
     3241 ggcgaaggaa atgtaaattt tgttaattcg gcgtgaagaa ttgatcctgg acagcatttt
     3301 gctcaaaaaa tagccatact atttaattgc aacaaggctg gaaagaggag gatcgaagta
     3361 tgttcgttga cagacagcga atcgatctgc tgaaccggtt gatcgacgca cgcgttgacc
     3421 tcgctgcata cgtgcaactg aggaaggcaa aaggatacat gtccgtcagc gaaagcaatc
     3481 atctacgaga taactttttt aaactgaatc gcgaactgca cgataaatcg ctgcggttga
     3541 atcttcatct ggatcaggaa gagtggagtg ctcttcatca tgctgaagaa gcattagcga
     3601 cagccgcagt atgtttgatg agtgggcacc atgattgccc gactgttatt accgtcaacg
     3661 ccgataagct tgaaaattgt ctgatgagct taacgctgag tatccagagc ctgcagaagc
     3721 acgccatgct tgagaaggcc tgaaaactaa gggggagaaa gcgtctcccc cttcatgttt
     3781 aagtttttgt aaaaatgaat ttgttatctc ctccactgac tacgctttaa gccagagtca
     3841 atccggaggc g
//
LOCUS       DAJVUY010000248         3818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.251, whole genome shotgun sequence.
ACCESSION   DAJVUY010000248 DAJVUY010000000
VERSION     DAJVUY010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.251"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..211
                     /locus_tag="OQQ72_004052"
                     /pseudo
     CDS             1..211
                     /locus_tag="OQQ72_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310610.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
     gene            193..1575
                     /gene="torZ"
                     /locus_tag="OQQ72_004053"
                     /pseudo
     CDS             193..1575
                     /gene="torZ"
                     /locus_tag="OQQ72_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707760.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine N-oxide reductase TorZ"
     gene            complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="OQQ72_004054"
     CDS             complement(1740..2711)
                     /gene="cmoB"
                     /locus_tag="OQQ72_004054"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HCS2013591.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
     gene            complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="OQQ72_004055"
     CDS             complement(2708..3451)
                     /gene="cmoA"
                     /locus_tag="OQQ72_004055"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HCS2013592.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MISMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI
                     DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     HKAGFEHSELWFQCFNFGSLVALKAEDAA"
     gene            complement(3492..>3818)
                     /locus_tag="OQQ72_004056"
     CDS             complement(3492..>3818)
                     /locus_tag="OQQ72_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310606.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HCS2013593.1"
                     /translation="LRLQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMN
                     GAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWE
                     LVFSLR"
BASE COUNT         1010 a          952 c         1009 g          847 t
ORIGIN      
        1 aggcgagctg gctaccgtga atcctggtac cgatctcacc gtcgttgatg ccagtggcaa
       61 acagccgatc gttctgttgc agggttatca aatgcagggc agtgaaaaca cgctctacct
      121 ggcggcaggt caacggctgg cgctagccac attaagtgaa gaaggtatca aggcgctcac
      181 gctaaacggg gaatggcagg ctggggaatt cagcgccagc aatatggtga acagaaacac
      241 tggatgctgg tgacgctggc ggcggtgtta gggcagattg gtacaccggg cggcggtttt
      301 ggtttctctt atcattactc caatggtggc aacccgacac gtgttggcgg cgtgctgccg
      361 gaaatgtctg cggcgattgc cggacaggcc agcgaggccg ctgatgatgg cggaatgagg
      421 gcgattcctg ttgcccgtat cgtcgatgcg ctggaaaatc ctggcggcaa atatcagcat
      481 aacggtaaag agcaaacgta tccgaatatc aaaatgatct ggtgggcggg tggcggtaac
      541 tttacccatc accaggatac taatcgtctg attaaagcat ggcagaaacc ggagatgatc
      601 gtcgtttctg aatgctactg gaccgcagct gctaaacatg cagatatcgt attaccgatc
      661 accacatcgt ttgagcgcaa tgacttgacg atgaccggtg attacagcaa ccagcatatt
      721 gtgccgatga agcaggctgt cgctccgcaa tttgaagcgc gaaacgattt tgatgtgttt
      781 gccgatcttg cggaattact gaaacctggc ggaaaagaga tctataccga aggtaaagat
      841 gaaatggcgt ggctgaaatt tttctatgat gccgctcaga aaggtgcccg tgcgcaacgc
      901 gtgactatgc cgatgtttaa tgccttctgg cagcaaaata aactgatcga aatgcgccgc
      961 agcgagaaga acgaacagta cgttcgttat gctgatttcc gcgccgatcc ggtgaaaaat
     1021 gcgctgggta cgccaagcgg caaaattgag atttactcca aaacgctgga aaaatttggc
     1081 tataaggatt gcccggcaca tccaacctgg cttgcgcctg atgagtggaa gggtaccgcc
     1141 gacgagaagc agttgcagct tctgaccgca catccggcac accgtttaca tagtcagctt
     1201 aactatgcgg aactgcgtaa aaaatatgcg gttgcagatc gtgaaccaat cactattcat
     1261 accgaagatg ctgctcgctt tggtattgcg aatggtgatc tggtgcgtgt gtggaacaaa
     1321 cgtggtcaga ttctgacagg cgcggtggtg actgacggga tcaaaaaagg cgtggtatgc
     1381 gtgcatgaag gtgcatggcc agatctggaa aatggcttgt gtaaaaacgg cagtgcgaac
     1441 gtgttaacgg cggatatccc cagctcgcag ctggcaaatg cctgtgccgg taactctgcg
     1501 ctggtgtata tcgaaaaata tacgggtaac gcaccgaagt taacggcatt tgataagcct
     1561 gctgttcagg cgtaagaagt gaatagcgcc cggaaacggg cgctgaggtt atgcaaacgt
     1621 aaaactgcct gatgcgctat gcttatcagg cctacatagt ccctgcaata gattgaatta
     1681 gcaagggttt gtaggccgga taaggcattc acgctgcatc cggcagtaat accagacctt
     1741 tacggcttgc gcgcaatcag caccgcgcgt ttaggcgcag gataaccttc aactgtctta
     1801 ctcggatcat gtgggtcgag gaaatcggac agagattcgg taaccatcca ttcagtgcgt
     1861 cgctgctctt cagtagtggt aacgcacaca tccacaacgc ggatatctac aaaaccacac
     1921 ttcttcagcc agtttttcag cgccagcgcg gaagggatga aatagacatt acgcatttgc
     1981 gcgtaacgat cgcctggtac cagcaccgtg ttctcatcgc catcaataac cagcgtttcc
     2041 agcaccagtt caccctcatt caccagttga tctttcaact gccagagatg ctccagcggc
     2101 gaacggcgat ggtaaagcac gcccatcgaa aagacggtat caaaggcttt cagtgccgga
     2161 agctgttcaa tacctaacgg taacaaatgt gcgcgctgat cgttacccag tagtttacgc
     2221 accgcttcaa actggcacag aaacagttgc gtagggtcga tccccaccgc gaggtgcgcg
     2281 cctgcgccaa tcatgcgcca catgtgataa ccgctgccgc agccgacatc cagaatggtg
     2341 cgtccggtta aatcagaaag atggggcaga acacgatccc atttccagtc ggaacgccat
     2401 tcggtatcga tgttgacgcc atacagtgag aacggccctt tgcgccatgg catcaggttc
     2461 cgcataagcg tttcaatgcg tttaatttgc ccggtgctca gtggctcttc gctttcggcg
     2521 gttacgctat gcaataaatc cagacgatac ggtttaattt caggcagaaa ttccaccgcg
     2581 ttggaccact gcttaaacag cccgtgctgc tgctcgcgct gccagttagc aatctgcgcg
     2641 ggcagcgttt cgagccagtg tgaaagatga tttttggcaa tcagagaata aaagttacca
     2701 aagtcgatca tgcagcgtcc tctgctttta atgccaccag tgaaccaaag ttaaagcact
     2761 ggaaccacag ctcgctatgc tcaaaaccgg ctttatgcag gcgtgcttta tgggtttcca
     2821 cggaatcggt cagcatcacg ttttccagca tgctgcgctt ctggctgatc tccagttcgc
     2881 tgtaaccgtt ggcacgttta aagtcgtggt gcatgttgaa caacagttca ccaactttgg
     2941 catcttcgaa actgaatttt tccgaaagca ccagcgcgcc gcccgggttc agtccttgat
     3001 aaattttatc cagtaatgcc tggcgctcgg aaggttccag gaattgcagg gtaaaattca
     3061 gcaccaccat cgatgcgttt tcaatggcga tatcgcgaat atcaccttca atgacgtcta
     3121 ctggcgtagg ggctttatag gcgtcaatat gacgacggca gcgttcaatc atcgccgggg
     3181 agttgtcgat ggcaataatt ttgcaattat catgatgaat gttgcgacgc accgagagcg
     3241 tcgccgcgcc cagagaacaa cccagatcgt aaacctgcgt accaggttga acgaagcgct
     3301 cggctaacat actaatcatg gaaataatat tggaatagcc gggaacggaa cgctggatca
     3361 tatccgggaa gacttcagct acccgttcat caaaggtcca gtcgcccagt ctggcgatag
     3421 gggcagaaaa tagcgtgtcg cggtgagaca taacgtaaaa atccgggaaa aagaaagtgg
     3481 cgtattgtgc gctaacgcag ggagaaaacc aactcccagg gcatatacca aagattcgcc
     3541 agcaccatca gcaacagcgc acaccaggtg gcgctcatgc cggaacgtcg ccagcgaaac
     3601 agacggtgat gaaaaccgta ataatgcatc agacgaccag caagcaaaac gatgccgcaa
     3661 atatgcacca tccaggtttc tgcgccattc atttccataa acagcatcag cacaatcgcg
     3721 atgggaatat attccaccgc gttaccatga atgcgaatag cgctttgcag ttcgctaaaa
     3781 ccaccgtcac cataggcaac gcggtactgc aaacgcaa
//
LOCUS       DAJVUY010000249         3792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.252, whole genome shotgun sequence.
ACCESSION   DAJVUY010000249 DAJVUY010000000
VERSION     DAJVUY010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.252"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..198)
                     /locus_tag="OQQ72_004057"
                     /pseudo
     CDS             complement(1..198)
                     /locus_tag="OQQ72_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            187..594
                     /locus_tag="OQQ72_004058"
     CDS             187..594
                     /locus_tag="OQQ72_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HCS2013594.1"
                     /translation="MRGRPVLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVE
                     GLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD
                     YDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV"
     gene            732..1616
                     /locus_tag="OQQ72_004059"
     CDS             732..1616
                     /locus_tag="OQQ72_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS2013595.1"
                     /translation="MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALP
                     AGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLM
                     VVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGT
                     VLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAG
                     LTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWL
                     GQRSNRTPRARIACRKSP"
     gene            complement(1648..2847)
                     /gene="tet(A)"
                     /locus_tag="OQQ72_004060"
     CDS             complement(1648..2847)
                     /gene="tet(A)"
                     /locus_tag="OQQ72_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HCS2013596.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            2953..3603
                     /gene="tetR(A)"
                     /locus_tag="OQQ72_004061"
     CDS             2953..3603
                     /gene="tetR(A)"
                     /locus_tag="OQQ72_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HCS2013597.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
BASE COUNT          707 a         1168 c         1190 g          727 t
ORIGIN      
        1 ggagcgcagg gcgttcttca gctcggacag ggcgcagatt tcgtagaatt tccggtcgag
       61 gccttccggg gtgatcacca gcggcttcca gcgcggcttg atgaaggccg tgggtgcatc
      121 ggccggcacc ttgcgcaggt tgtcggcgtt catctcacgc agggtctgca cggctgccag
      181 cacgccttgc gcggccggcc cgtgctgttc cccaactttt cgctcggcga agagtatgaa
      241 catgcgccgc cggcgacgaa tcgccaaatc tcaccgtatc tcccgagcgg acgatttcgc
      301 accggtctgc ccgtcgaagg gcttgcgatc gaacggggcg accttttcta tgcatgtccg
      361 cgagccagcg tcttttatgg cacggcgctc gacgccgacc ttcggacgcg cggcgtaagc
      421 acgcttgtca tggccgggat aagcaccacc ggcgttgttc tttcaagcgt cgcctgggct
      481 agtgatgcgg actacgacgt gcgtttggtc caggactgct gctacgaccc ggatcgggat
      541 gcccacgaag ctctgttgcg ttccgggttc ggcggacgtg tacaggtcgt gtaattttcg
      601 ggcctcgcat gatcgcggcc atagccgcag gtggattggt gcgaggcagg gccagtccaa
      661 gtcagggtgc ggtcatcgcg gcgcctgcaa ctctcaaaaa cccatcgccg tagcggaggt
      721 cttgtaatcg catgtcatta cgcacgcccg atttattgtt cacagcgata gcacctgcca
      781 tttggggcag cacctacatt gtcaccaccc aatacctgcc gaacttctca ccgatgacgg
      841 tcgcgatgct gcgggcgttg ccggcgggtt tattgctcgt gatgatcgtc cgacagattc
      901 caacgggaat ctggtggatg cgcatcttca tcctcggcgc acttaatatt tcgctattct
      961 ggagcttgtt gtttatttcg gtctaccgcc tgccgggcgg ggtcgcggcg acggtaggcg
     1021 ctgtgcagcc gctgatggtc gtgttcatct ctgccgctct gctaggtagc ccgatacgat
     1081 tgatggcggt cctgggggct atttgcggaa ctgcgggcgt ggcgctgttg gtgttgacac
     1141 caaacgcagc gctagatcct gtcggcgtcg cagcgggcct ggcgggggcg gtttccatgg
     1201 cgttcggaac cgtgctgacc cgcaagtggc aacctcccgt gcctctgctc acctttaccg
     1261 cctggcaact ggcggccgga ggacttctgc tcgttccagt agctttagtg tttgatccgc
     1321 caatcccgat gcctacagga accaatgttc tcggcctggc gtggctcggc ctgatcggag
     1381 cgggtttaac ctacttcctt tggttccggg ggatctcgcg actcgaacct acagttgttt
     1441 ccttactggg ctttctcagc ccggggaccg ccgtgttgct aggatggttg ttcttggatc
     1501 agacgctgag tgcgcttcaa atcatcggcg tcctgctcgt gatcgggagt atctggctgg
     1561 gccaacgttc caaccgcact cctagggcgc gtatagcttg ccggaagtcg ccttgacccg
     1621 catggcatag gcctatcgtt tccacgatca gcgatcggct cgttgccctg cgccgctcca
     1681 aagcccgcga cgcagcgccg gcaggcagag caagtagagg gcagcgcctg caatccatgc
     1741 ccacccgttc cacgttgtta tagaagccgc atagatcgcc gtgaagagga ggggtccgac
     1801 gatcgaggtc aggctggtga gcgccgccag tgagccttgc agctgcccct gacgttcctc
     1861 atccacctgc ctggacaaca ttgcttgcag cgccggcatt ccgatgccac ccgaagcaag
     1921 caggaccatg atcgggaacg ccatccatcc ccgtgtcgcg aaggcaagca ggatgtagcc
     1981 tgtgccgtcg gcaatcattc cgagcatgag tgcccgcctt tcgccgagcc gggcggctac
     2041 agggccggtg atcattgcct gggcgagtga atgcagaatg ccaaatgcgg caagcgaaat
     2101 gccgatcgtg gtcgcgtccc agtgaaagcg atcctcgccg aaaatgaccc aaagcgcggc
     2161 cggcacctgt ccgacaagtt gcatgatgaa gaagaccgcc atcagggcgg cgacgacggt
     2221 catgccccgg gcccaccgga acgaagcgag cgggttgaga gcctcccggc gtaacggccg
     2281 gcgttcgcct ttgtgcgact ccggcaaaag gaaacagccc gtcaggaaat tgaggccgtt
     2341 caaggctgcc gcggcgaaga acggagcgtg gggggagaaa ccgcccatca gcccaccgag
     2401 cacaggtccc gcgaccatcc cgaacccgaa acaggcgctc atgaagccga agtgccgcgc
     2461 gcgctcatcg ccatcagtga tatcggcaat ataagcgccg gctaccgccc cagtcgcccc
     2521 ggtgatgccg gccacgatcc gcccgatata gagaacccaa aggaaaggcg ccgtcgccat
     2581 gatggcgtag tcgacagcag cgccggccag cgagacgagc aagaccggcc gccgcccgaa
     2641 acgatccgac agcgcgccca gcacaggtgc gcaggcaaat tgcatcaacg catacagcgc
     2701 cagcagaatg ccatagtggg cggtgacgtc gttcgagtga accagatcgc gcaggaggcc
     2761 cggcagcacc ggcataatca ggccgatgcc gacagcgtcg agcgcgacag tgctcagaat
     2821 tacgatcagg ggtctgttgg gtttcacgtc tggcctccgg accagcctcc gctggtccga
     2881 ttgaacgcgc ggattcttta tcactgataa gttggtggac atattatgtt tatcagtgat
     2941 aaagtgtcaa gcatgacaaa gttgcagccg aatacagtga tccgtgccgc cctggacctg
     3001 ttgaacgagg tcggcgtaga cggtctgacg acacgcaaac tggcggaacg gttgggggtt
     3061 cagcagccgg cgctttactg gcacttcagg aacaagcggg cgctgctcga cgcactggcc
     3121 gaagccatgc tggcggagaa tcatacgcat tcggtgccga gagccgacga cgactggcgc
     3181 tcatttctga tcgggaatgc ccgcagcttc aggcaggcgc tgctcgccta ccgcgatggc
     3241 gcgcgcatcc atgccggcac gcgaccgggc gcaccgcaga tggaaacggc cgacgcgcag
     3301 cttcgcttcc tctgcgaggc gggtttttcg gccggggacg ccgtcaatgc gctgatgaca
     3361 atcagctact tcactgttgg ggccgtgctt gaggagcagg ccggcgacag cgatgccggc
     3421 gagcgcggcg gcaccgttga acaggctccg ctctcgccgc tgttgcgggc cgcgatagac
     3481 gccttcgacg aagccggtcc ggacgcagcg ttcgagcagg gactcgcggt gattgtcgat
     3541 ggattggcga aaaggaggct cgttgtcagg aacgttgaag gaccgagaaa gggtgacgat
     3601 tgatcaggac cgctgccgga gcgcaaccca ctcactacag cagagccatg tagacaacat
     3661 cccctccccc tttccaccgc atcagacgcc cgtagcagcc cgctacgggc tttttcatgc
     3721 cctgccctag cgtccaagcc tcacggccgc gctcggcctc tctggcggcc ttctggcgct
     3781 cctgctgcgg cg
//
LOCUS       DAJVUY010000250         3774 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.253, whole genome shotgun sequence.
ACCESSION   DAJVUY010000250 DAJVUY010000000
VERSION     DAJVUY010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.253"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..211)
                     /locus_tag="OQQ72_004062"
     CDS             complement(<1..211)
                     /locus_tag="OQQ72_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HCS2013598.1"
                     /translation="MRHFIYQDEKSHKFWAVEQQGNELHISWGKVGTKGQSQIKSFSD
                     AAAAAKAELKLIAEKVKKGYVEQAKD"
     gene            complement(352..2385)
                     /gene="metG"
                     /locus_tag="OQQ72_004063"
     CDS             complement(352..2385)
                     /gene="metG"
                     /locus_tag="OQQ72_004063"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCS2013599.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSDALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQESRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK"
     gene            2517..3626
                     /gene="apbC"
                     /locus_tag="OQQ72_004064"
     CDS             2517..3626
                     /gene="apbC"
                     /locus_tag="OQQ72_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HCS2013600.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHCLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP
                     ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV"
BASE COUNT          903 a          966 c          968 g          937 t
ORIGIN      
        1 tatccttcgc ttgctccaca taccccttct tcaccttctc cgcaatcagc ttaagctccg
       61 cttttgccgc tgccgcagca tctgaaaaac tttttatctg gctttgccct ttggtgccaa
      121 cttttcccca actgatatgc aactcgtttc cctgttgctc aactgcccag aatttatgtg
      181 atttttcgtc ctgatagata aagtgtctca ttctgcatcc ctgtaatttt atccagttga
      241 atgcagatgc taccagtatt tatgcgggtt agagagagac aaaatcgcaa gaaaacaact
      301 ttaggaattt ataaagaaaa ggcgctgtcg atgcagcgcc ttgaaggggg attatttcac
      361 ctgatgaccc ggtttagcac cggcatccgg gcttagcagg aaaatatctt tcccgccagg
      421 accggcagcc atcaccatgc cttcagagat accgaagcgc attttacgtg gtgctaggtt
      481 agccaccata atggtgtgac gaccaatcag tgcctgcgga tccgggtaag cagaacgaat
      541 accggagaag acattgcgtt tttcaccgcc gagatccagc gtcaggcgca gcagtttgtc
      601 agaaccttca acaaactctg cgttttcaat cagcgccacg cgcaggtcaa ctttagcgaa
      661 gtcgtcaaag gtgatggttt cctgaatcgg atcatctgcc agcgggccag ttaccggcgc
      721 ggcagcggct tttacttctt ctttagaggc ttccaccagt gcttcaacct gcctcatatc
      781 gatgcggtta tacagcgcct tgaacggatt cactttgtgg cccagcagcg gttgctggat
      841 accatcccag gtcagttccg tattgaggaa tgcttctgca cgctcggtca gtttcggcag
      901 taccggcttc aggtaagtca tcagcacgcg gaacaggttg atgcccattg agcaaattgc
      961 ctgcaggtcg gcatcgcggc tttcctgttt cgccaccacc cacggagcct gttcatcgac
     1021 atagcggtta gccagatcag ccagcgccat gatttcgcgc acggctttac caaattcacg
     1081 gctttcccac gcttcaccaa tcacttcagc ggcatcagtg aaggttttgt acaactgcgg
     1141 gtcagccagt tcgcttgcca gcacgccgtc aaaacgcttg ttgataaagc ccgcattacg
     1201 ggaggccagg ttaaccactt tgttaacgat atcggcattc acacgctgaa cgaaatcttc
     1261 caggttgaga tcgatatcat cgatgcgcga agagagtttc gcagtgtagt agtaacgcag
     1321 gctgtctgcg tcaaaatgat tcagccaggt gctggcttta ataaaggtgc cgcgagactt
     1381 ggacatcttc gcgccgttca ccgtcacata gccatgaaca aacaggttgg tcggcttgcg
     1441 gaagttgctg ccttccagca tggcaggcca gaacaggctg tggaagtaaa cgatatcttt
     1501 accgatgaag tggtacagct cggcggtgga gtctttcttc cagtattcat cgaagcttac
     1561 gctgtcgccg cgcttgtcgc acagattctt gaaagaaccc atgtagccaa tcggtgcgtc
     1621 cagccagacg tagaaatatt tgcccggcgc gttcggaatt tcaaaaccga agtaaggtgc
     1681 gtcgcgggag atatcccact gttgcaggcc agattcaaac cactcctgca ttttgtttgc
     1741 cacctgctcc tgcaacgcat cgctgcgggt ccatgcctgc aacatttcgc tgaaagaggg
     1801 cagatcaaag aagaagtgtt cagaatcacg cattaccggg gtagcgccag aaaccaccga
     1861 tttcggctcg atcagttcag tcgggctgta ggtcgcgccg cagacttcgc agttatcgcc
     1921 gtattgatcc ggggatttac atttcgggca ggtgcctttc acaaaacggt ccggcaggaa
     1981 catgcctttt tccggatcgt acagctgaga gatggtgcgg tttttaataa aaccgttttc
     2041 tttcaggcga gagtagataa gttctgacaa ctggcggttc tcttcgctgt gtgtcgagtg
     2101 atagttgtca tagctgatgt taaagcctgc gaaatcagtc tgatgctcct gactcatttc
     2161 gccaatcatc tgctccgggg tgataccaag ctgctgagct ttcagcatga tcggtgtacc
     2221 gtgggcatcg tcggcgcaga tgaagttgac ctcgtggccg cgcattcgct ggtaacggac
     2281 ccagacatca gcctggatgt gctccagcat atggccgagg tggattgagc cgttagcgta
     2341 cggcagtgcg cacgtcacca gaattttctt cgcgacttga gtcatagtag gcattacttc
     2401 ttaatagtga aaaggggtta gatagtacca aatgggaaaa tgttaagtaa gtacttctct
     2461 atattcttca ggtaaactat cagctgatgg tttatctata caaaaaagga gtcgggatga
     2521 acgaacaatc ccaggccaaa tcaccagaag ccttgcgcgc aatggtcgcc gggacactgg
     2581 ccaattttca gcacccaacc ctgaagcata acctcaccac gctgaaagcg ttgcaccatg
     2641 tcgcctggat ggacgacacg ttgcatgtgg aactggttat gccattcgtc tggcatagcg
     2701 cgtttgaaga gttaaaagag caatgtagcg ccgaactgct gcgtatcacc ggggcgaaag
     2761 ctatcgactg gaaactgtcg cacaatatcg ccaccttaaa acgcgtgaag aatcagccgg
     2821 gtattaatgg tgtgaagaac atcattgcgg tcagttccgg taaaggcggc gtgggtaaat
     2881 cctccacggc ggtaaacctg gcgctggcac tggcggcgga aggggcgaaa gtcggcattc
     2941 tggacgccga tatctacggc ccatcaattc ccaccatgct gggcgcagaa aatcagcgtc
     3001 caacttcgcc ggacggtacc catatggcac cgattatgtc tcattgcctg gcaaccaatt
     3061 caattggtta tctggtcact gacgacaatg cgatggtgtg gcgtggaccg atggcgagca
     3121 aggcgttaat gcagatgttg caggaaacct tgtggccgga tctcgactat ctggtgcttg
     3181 atatgccgcc aggcaccggt gacattcaat tgacgctggc gcaaaacatt ccagtaactg
     3241 gtgcagtcgt ggtcaccacc ccgcaggaca tcgcgttgat cgatgcgaaa aaaggcattg
     3301 tgatgttcga gaaagtcgag gttccggtgc ttggtattgt cgagaacatg agtgtgcata
     3361 tttgcagtaa ctgtggtcac catgaaccga ttttcggtac cggtggtgca gagaaactgg
     3421 ctgaaaaata ccacacacag ctgctggggc agatgccgtt acacatctcc ttacgtgagg
     3481 atctcgataa aggcacgcca acggttatca gccgtccgga gagcgaattt accgctatct
     3541 accgccagct ggctgaccgc gttgcagctc agctctactg gcagggtgaa gtcattccag
     3601 gcgagatttc cttccgcgcg gtctaacgcc tattaaccat tctggttatt cttcatacac
     3661 cgcagagatg ttacattgat gcggtgtatt agtttttgcc gcattaatga acacttattt
     3721 aatactgcga atattctgcg gaccttcgtc cgaaactcta caaagtcgat tgat
//
LOCUS       DAJVUY010000251         3738 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.254, whole genome shotgun sequence.
ACCESSION   DAJVUY010000251 DAJVUY010000000
VERSION     DAJVUY010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.254"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..861)
                     /locus_tag="OQQ72_004065"
     CDS             complement(<1..861)
                     /locus_tag="OQQ72_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000094541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS2013601.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAEI"
     gene            complement(886..1764)
                     /gene="yihU"
                     /locus_tag="OQQ72_004066"
     CDS             complement(886..1764)
                     /gene="yihU"
                     /locus_tag="OQQ72_004066"
                     /EC_number="1.1.1.373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
                     /protein_id="HCS2013602.1"
                     /translation="MATIAFLGLGQMGSPMANNLLQKGHSLQVFDVNAQAVDALVTQG
                     ATAAQTQAEAAAGAEFIITMLPNGDIVRQVLLGEKGVCEAVSSDALLIDMSTIHPLQT
                     DALIRELQEKGISMMDAPVGRTSVNAIDGTLLILAGGTDEQIARARPILMCMGNELVE
                     AGGPGMGIRVKLINNYMSIALNALSSEAAVLCESLGLNLDVAIKVMSGTAAGKGHFTT
                     TWPGKVLKGDLSPAFMVDLALKDLRIAVDVARETGTPLNMGIAAESYYAAASQDGKGR
                     QDWSALLNQVRQQAGL"
     gene            1937..2833
                     /locus_tag="OQQ72_004067"
     CDS             1937..2833
                     /locus_tag="OQQ72_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS2013603.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYNLILADVRWHSGTEKAFSLARLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            2873..3661
                     /locus_tag="OQQ72_004068"
     CDS             2873..3661
                     /locus_tag="OQQ72_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS2013604.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDLNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
BASE COUNT          963 a          955 c          902 g          918 t
ORIGIN      
        1 aatttctgcc aaccgttgta aacgaggaac agagacatcg cgcagcatag tttgtggatc
       61 ttgtgcacca acaaccgacg cccaaaccgc tcgtccagcc aggaagcccg acgcaccacc
      121 tttcatggca atacttactg cacggccaaa aatatcggca tcaacgccag aagaaagaat
      181 tacccacggc atcttcatct gatcgttaag ttgctgacag gcggcaagta aggttttttc
      241 atcgcctttg ccccctaatg gcatctcggc tttgtaaaga tcagcctctg ttccaccaag
      301 ctctgcggcg gcggcaacaa tggcgctttc acgatcaaag tcccaaccgc gacgaggtgg
      361 acgcaccaca ggttcaataa tgctcaccag cccggcacta cggcagcgac gaacaaattt
      421 atcaaccatt gccagacgtt cctctgcggg ttcatcttca cgccagagta caagtaattt
      481 cattgcctta gcccccattt cacgggcttt atgcgggtcg acggacatat ctatttcaac
      541 gctatcaacc gggatgccat tacctgggat aaaaagatcg gcagcgacaa tcaggccgca
      601 agaattagca acagcgccct gctcgactat ttgctcaaga caaaattgtt tatccgccag
      661 aacggcagaa gcataaggag aaaggattcg ggtcgcggca actttaaaat cggtgagtac
      721 actgtcggcg atgggttttg gctgccctgc tgccgcaaac atcaagcgca tggcctcacg
      781 ctgatcgaca gctaacatgg caaatccacc acctgggcgg gagatatctt tcagcgtaaa
      841 tggggtgaag tgggatgaca tagaaactcc tgttaataga taaaattaaa gaccagcctg
      901 ctggcgaacc tgatttagca gggcactcca gtcctgccgc cctttgccgt cttgacttgc
      961 tgcagcgtaa taactttctg ctgcaatccc catattgagc ggtgtccccg tctcccgagc
     1021 gacgtcaact gcaatacgca gatctttcaa cgccagatcc accatgaagg cgggtgaaag
     1081 atcgcctttc agcactttgc caggccaggt ggtcgtaaaa tgtcctttcc ctgctgccgt
     1141 accactcatc accttaattg cgacatcaag atttaatccc agtgactcac ataacacagc
     1201 ggcctcggag gacagcgcat taagcgcaat gctcatatag ttgttaatta gcttcacgcg
     1261 gatccccatt cctgggccgc cagcctcgac cagctcatta cccatgcaca taagaatcgg
     1321 gcgtgcacgt gcaatctgct catcagtgcc acccgctaaa atcagcaatg tgccatcaat
     1381 cgcattcacg gacgttctgc ccacgggagc gtccatcata ctgatgcctt tttcttgtaa
     1441 ctcccgtatt aatgcatcgg tctgtaaggg atgaatagtc gacatatcaa tcaataacgc
     1501 gtcagatgaa acagcctcac agacgccttt ttcccccaac agaacctgtc gaacaatgtc
     1561 accattggga agcatagtga tgataaattc agcgcctgct gctgcttccg cttgggtttg
     1621 tgccgcagtg gccccctgcg taactagcgc atcgacggcc tgtgcattga catcaaatac
     1681 ctgcaatgaa tgcccttttt gcaatagatt gttagccatt gggctaccca tctgccccag
     1741 cccgagaaat gcaatggttg ccatgaatac tctcctgtct gacattgaca aaataatgac
     1801 aattgaaaat tcgtttttgt ctgtttttga gcatatttgt gatttatgtt caaaaacacg
     1861 acacgcatca ctaatttgat catttgcgtc atttaaattg accaaagacg acaaaattaa
     1921 acaggacaag acaaatatga ccagaattgc atgcgtgggt atcacagttc aggacagaat
     1981 ttattctttg cccactctgc cggagggcgg cgggaaatat caggcaaatc attatcttga
     2041 gattggtggc ggcccggcag caacagccgc tgttgcaatc gcaaagcttg gcgtggaggt
     2101 tgatttcatc ggtcgcgtcg gcgatgacag ttgtggaaat accttacttg cagaacttga
     2161 gggttggggc gtcaataccg cattttgccg ccgatatcct aacgcccgtt cgtcgcaatc
     2221 agcgatcctc gttgatcagc atggcgaacg gattatcgtt aattatccaa gtcctgatct
     2281 cggtactgat gccgaatggt tagaagcgat cgatttctct cgttataatc tgattctggc
     2341 cgatgttcgc tggcatagcg gtactgaaaa agcattctcg ctagcgcgcc ttgcgggtgt
     2401 gacaacgctt ttagacgccg atatgacacc gcaggatatt tctccacttg tcgcgcttgc
     2461 cgatcacgcc gtgttctcaa caccagggct gaaacgcatg actggcctgc agtctcctga
     2521 agaaggtttg ttccaggcaa cgacacaaac agcaggtaaa gtgtatgtta cgctgggttc
     2581 tgaaggatcg ttgtggattg aagatggtca tttgtgtcaa caggaggcat tttctgtcaa
     2641 tgtggttgat accactggag caggcgatgt ttttcacggc gcactcgcgg tagcgttggc
     2701 agaaaaaatg ccaacaaaag aggctattcg ttttgccagt gcggttgccg cgatgaaatg
     2761 tacccagcct ggcggtcggg ccggcattcc taatcgtgag caaaccgaat catttttgtc
     2821 actttatgcg taaaatggta aacatctacc gaggaggggc aagggagtat tcatgagtat
     2881 catcgaagtg acaggtaatc cacgccatga ccaactcgtt catctaatcg cagaacgcgg
     2941 ttatatgaat attgaagaac tggcacaact gctggatgtt tcaacgcaaa ccgtgcgccg
     3001 ggatatccga aaactcagtg agcagggctt gatcacccgt catcatggag gggccgggcg
     3061 cgtctccagc gtcatgaata ccgcttttga gcaacgggaa ctttcgctca ccgccgagaa
     3121 acgggcgatc gctgaggcag tcgccgatta ccttcccgaa cgctgtaccg tctttatcac
     3181 catcggtaca accgtagaag ccgttgccag ggcattactc aaccggcgtg atttacgcat
     3241 tatcactaac agcctacgtg tggcacagat tctttataag aatcaggata ttgaagtgat
     3301 ggtgccggga ggcactttac gcgctcataa cggcgggatt atcggcccag gagccgtgga
     3361 ttttattgaa ggcttccgcg cagattattt aatcaccagt ataggtgcca ttgaacatga
     3421 cggcacccta ctggaatttg atctaaatga agcgttagtc gcgagaacga tgattaaaca
     3481 tgcgcggaat acattgttag tggccgatca tacgaagttt gccgcgtctg ctgccgtttc
     3541 aattggcaat gcacggaatg tcagggcttt ttttactgat gccccgcctc ccaattcttt
     3601 ctgccagttg ttaagtgaag agaatgttga actggtggtt gccgagcaag aagtatcctg
     3661 aaattgaaat ttcggaaaat ccgctgggaa tttcagcgga ttttgttttc cataagcaaa
     3721 aaaaacctgc cagcgatg
//
LOCUS       DAJVUY010000252         3728 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.255, whole genome shotgun sequence.
ACCESSION   DAJVUY010000252 DAJVUY010000000
VERSION     DAJVUY010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3728
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.255"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(118..2187)
                     /gene="glyS"
                     /locus_tag="OQQ72_004069"
     CDS             complement(118..2187)
                     /gene="glyS"
                     /locus_tag="OQQ72_004069"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HCS2013605.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLVESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYACHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="OQQ72_004070"
     CDS             complement(2197..3108)
                     /gene="glyQ"
                     /locus_tag="OQQ72_004070"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HCS2013606.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3203..3502)
                     /locus_tag="OQQ72_004071"
     CDS             complement(3203..3502)
                     /locus_tag="OQQ72_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsaB family lipoprotein"
                     /protein_id="HCS2013607.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          864 a         1006 c          959 g          899 t
ORIGIN      
        1 cataaaatta atatatgaga taatctttat tcagcagaag attattaaag gttgctgtat
       61 tatttagcga taataaaaaa agcctgccag atggcaggct ttttaataac ggcgttatta
      121 ctgcaacagc gaaatatccg caacgcgcag gaacagttcg cgcagtttct ccagcatggt
      181 cagacggttg agacgcaatt ctttgtcatc aaccatgacc atcactttat cgaagaaagc
      241 atcaaccggc tcacgcagct ctgccagttc gaccagcgca tcctggtaac gaccttccgc
      301 aaagtacggc tccagcttgt cacgtagcac cacaacctgc atcgccagtt taatttcttc
      361 cggctctttc agggtagagg cattcacgcg gtcgctcagc acttcgtcag atttcgccag
      421 aatgttagat acacgtttgt tcgccgccgc cagtgcagca gctgcatcca gggtacggaa
      481 atgcgatacc gctttcatac gggcatcgaa atcagccgga cgagtcggac gacgcgccag
      541 taccgcctgg atggtgtcaa cggtgtaacc ttcgtcctga taccaggcgc ggaagcgacc
      601 gagcataaag tcgataacat catcaaccac gttggcgtta gtcagcttat cgccatacag
      661 acgcactgct tcttcggtca gcgtttgcag atcaaggttg aggttcttct caacgataat
      721 tcgcagcacg ccaagtgcgg cacgacgcag cgcaaacggg tctttgtcgc ctttcggatg
      781 ctgaccgata ccgaagatac ccgccagagt atccatctta tcagcaatcg ccagcgcaca
      841 agctaccggg ttggacggca ggtcatcacc ggcaaagcgc ggctgatact gctcattcag
      901 cgcgacggct acgtcttccg cttcgccatc gtgacacgcg tagtgcatcc ccataacgcc
      961 ttgggtgtcg gtgaactcga agaccatgtt ggtcatcagg tcacacttag acagcaggcc
     1021 cgcacgggtt gcgtggttaa cgtcagcgcc aatctgttca gcaatccagc cagccagcgc
     1081 ctggatgcgg tcagttttgt cacgcagcgt acccagctgt tgctggaaca gcacggtttg
     1141 caggcgcggc aggttatctt ccagacgttt tttacggtcg gtattgaaga agaactcggc
     1201 atccgccaga cgtggacgaa cgactttctc gttaccagag ataatttgct gcggatcttt
     1261 cgattcgatg ttggcaacga agatgaagtt cggcagcagt ttgccatcgt tcgcatacac
     1321 cgggaagtat ttctggtcac ctttcatggt gtaaaccagg gcttcagccg gcaccgcgag
     1381 gaatttctct tcgaattttg cggtcagaac gaccggccac tccaccagcg aagccacttc
     1441 ttccagcagg ctttcgctta agtcagcgtt accgccaatc ttacgcgctg cttcttcggc
     1501 atcggcttta atcttcgctt tacgttcttc gtaatcggcg atgactttcc cgcgctcacg
     1561 cagaatttcc ggatactgat cggcgttgtc gatggtgaat tccggttcgc ccataaagcg
     1621 gtggccgcga atcacgcgat cggactgaat gcccagaata gttgccggaa tgactttgtc
     1681 gcccagcagc agggtcacgg tgtgcaccgg acgcacgaag tgcacgtcgc ttgcgcccca
     1741 acgcatcagt ttcgggatcg gcagtttcgc cagagaagtc gcaaccatat tcggcagcag
     1801 tgcttcggtg ctttcgccct tcacatgggc gcgatacagc agccattcgc ctttatcggt
     1861 agtcagacgc tcagcctggt caacggtaat accgcaacca cgcgcccaac cttctgccgc
     1921 tttgctcggt ttgccttcag cgtcgaacgc ctgggcaatc gccgggccgc gtttttcgat
     1981 ttcacgatcc ggttgcgctt ccgccaggtt agctactttc agcgccagac gacgcggagc
     2041 agcaaaccat tgaacggtgc cgtgtgcgag gccagcgtta tccagctcca cagtaaaatt
     2101 cgcagcaaag gactcaacca ggctgcgcag tgcttttggt ggcagctctt cagtgccgat
     2161 ttccaccaga aaagttttct cagacatagc cgcctcttac ttatctttgt tgcacatcgg
     2221 gaagccgagg gcttcacggg aagcgtagta tgcttctgcc actgctttgg tcagggtgcg
     2281 aatgcgcaga atgtagcgct gacgctcggt gacggagatg gctttacgcg catccagcag
     2341 gttgaagctg tgggcggctt tcagaatacg ctcgtaggct ggcagcggca gcggattttc
     2401 cagcgccagc agctgctgcg cttctttctc gtactgctca aagcaggtga acaggaagtc
     2461 cacatccgcg tattcgaagt tgtaagtgga ctgctccact tcgttctgat ggaacacgtc
     2521 gccgtaggtg gttttaccca gcgggccgtc gctccagacc aggtcgtaaa cgctgtctac
     2581 gccctgaatg tacatggcca gacgttccag accgtaggtg atctcgccgg taaccggttt
     2641 acactccaga ccaccaacct gctggaagta agtgaactgc gtcacttcca tgccgtttag
     2701 ccacacttcc cagcccagtc cccaggcacc cagagtcggg ttttcccagt tatcttccac
     2761 gaaacggatg tcgtgaatag tcgggtccat gcccagctct ttcagagaac cgaggtacag
     2821 ctcctgaata ttgtccggcg atggcttaat gaccacctgg aactgatagt agtgctgtaa
     2881 acggttgggg ttttcgccgt agcgaccatc ggtcgggcga cgagaaggct gaacataagc
     2941 agccgccatc ggttctggcc ccagcgcgcg cagacaggtc attgggtgag aggttcccgc
     3001 gccgacttcc atgtccaatg gttgaacaat ggtgcagccc tggcgagccc agtaatcctg
     3061 taaggtcagg atcaagccct ggaaggtcct ggtatcaaac ttttgcatat tatttcgtgc
     3121 tggatacgtg tggatttaaa ggaagggatc agtatacccg ctggatggaa gatatacagt
     3181 acgaaacggg aaaaagcagg gcttaacgca tggaaagatg caaaaaatgg ccatctgcgt
     3241 caaaagaaca gacaaactgc tctttacgga aggtataacc gcgcatttca tagcttccct
     3301 ggaactgttc gaaggcggtg acgtcgattt tttgctcgcc ggtgttataa cgttttgccg
     3361 cctgatcctt gcataacgct tccatattca acgaacgcag aggatcaacc tttacccgtt
     3421 gtgctttctg cacgggtgac ggtgtagaac aacccactag caccataagc gccattgccg
     3481 gaaagaaagc gttcatcatc attaaattac cgtctggttt gcaggtgagt cttattattt
     3541 atatcggtat agtggctgat atcttacgaa tttccttaag cctctataag ctgtagtgat
     3601 aaaactcaga ttattccagt gcgccaacca aatgatttat cggtcagact ttttttaacc
     3661 agatacagag acacagatgc aggtaatgct gccaacttac tgatttagtg tatgatggtg
     3721 attttaag
//
LOCUS       DAJVUY010000253         3723 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.256, whole genome shotgun sequence.
ACCESSION   DAJVUY010000253 DAJVUY010000000
VERSION     DAJVUY010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.256"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            35..262
                     /locus_tag="OQQ72_004072"
     CDS             35..262
                     /locus_tag="OQQ72_004072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS2013608.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(263..637)
                     /locus_tag="OQQ72_004073"
     CDS             complement(263..637)
                     /locus_tag="OQQ72_004073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS2013609.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ72_004074"
                     /pseudo
     CDS             complement(720..1944)
                     /gene="mdtG"
                     /locus_tag="OQQ72_004074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ72_004075"
     CDS             complement(2116..3036)
                     /gene="lpxL"
                     /locus_tag="OQQ72_004075"
                     /EC_number="2.3.1.241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) lauroyltransferase"
                     /protein_id="HCS2013610.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3261..3723
                     /locus_tag="OQQ72_004076"
                     /pseudo
     CDS             3261..3723
                     /locus_tag="OQQ72_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
BASE COUNT          915 a          951 c          945 g          912 t
ORIGIN      
        1 ttatgccggt atttttttac ggaagaggta tcaaatgcgt ttaattgtgg tgagcatcat
       61 ggtgaccttg ctgagtggct gtggcagcat tattagtcgc actataccgg ggcaggggca
      121 tggcaaccaa tattatcccg gtgtgcaatg ggatgtgcgt gactccgcct ggcgttatgt
      181 cacaatcctt gatctgccat tctccctggt ttttgatact ttactgctgc cgatcgacat
      241 tcatcatggc ccgtatgagt gattaacgtt catcccactc atcagctgct gcgcgtcctt
      301 cctcggtatc cagcggtggc tcaagctgaa attccccctc gtcccattca tgtaatgtat
      361 tctcttcctg ccactcctgg cgtatctcta tctcatcata gtcgccatca aaaacacttt
      421 gcgcggcttc accgctaagc ataggtaaac attcaccttc ttccccttcg tcggcaaaaa
      481 actcaacttg ccacatgatg tcgccgtcct gcaaaacgta tttttgggca ttgaactgtt
      541 gcacattcgc atcttcggcg tcgatgccgg ggttgtctgc aagaaattct tcgcgtgcag
      601 cgtcaatggc ttcttcaagc gttgcgtaca tggtcatcac gattctccct ttgagttgat
      661 gaggtttcag ggaaaaggat agctgattct ccgcttttgc aagtatgaaa ggcgaaaaat
      721 cagttcgata cctggggtat tcgacgacga cgtagactgt tccatgaata gactgcgttg
      781 aataacacta cgccagcggt gacgagaaat accgctctga aaccgtagtt cgctgaaatc
      841 gctgctccca tcaatggtcc ggtaacgttg ccaatatcac gaaacgattg gttatagctg
      901 aagatacgcc cggcgatctg gttgctcgag ttgtaaacca acaatgtctg tacggcgggg
      961 agtagtgcac catcggcggc accgagcaaa aaacgtaaaa tcccaagttg caatggcgtc
     1021 tgaacgtaag acattgggat caacagcagt acagaaaaga tcagcgctgt aatcaggatc
     1081 ttttcgggtc cgattcgatc gccaagtttg ccgagtcgtg gtgcacttag cagagccgcc
     1141 acgcctggca ccgaggcgat catgccactg ataaaggcga cgttactgac gttacccgcc
     1201 agttcgcgga catacagcgt cagaatgggg gcaattgagc ccgtcgccac ctggatgatt
     1261 aacgtagtga caaacaggct gagtaccagt ttcgggtttt taagtgatgt caccacttcc
     1321 cgcatgtgca gcatctcttt tttgctgacc ggctggaatt tttctctgat gcaaaacagg
     1381 gtgacgaaaa agcagagtat gagcacactg gtggtaataa agaataccgg acgtaagccg
     1441 tagctatcgg cgagcaggcc gccagccatt gggccgagca acgcaccacc aacgccgcct
     1501 gtggagagcg tacccagcgc ccagccgctt ttattacgcg gtacttgtgt ggcgataaga
     1561 gcattagcgt tggggacaaa tccgccaagt aacccaagaa gcgcccgcag gatcaaaaac
     1621 tgccagatat tttgtgccag ccccatcaac accatcacga tgcccatgcc gagggcagag
     1681 cgtaatagca tgagttttcg gcctttacgg tcggcgagtc caccccaaaa cggtgaggcg
     1741 atggccgaaa ataaaaatgt aatgctgaag acaataccgg accatattca gggcggagtg
     1801 accggtaacg ccaagctgct caacgtagag gggtaagaag ggcattacca gactgaaggc
     1861 ggcaccggta agaaaacagc ctagccaggc gacgatcagg tttcgtttcc agtttatagg
     1921 ggtgtcattt tcacagggtg acatagcaat ccgctgttgg tgcgccaggc gcggtgaaca
     1981 taagaagaaa agataagcac actaattatg cgcccgactt ccagggggcg caatccagag
     2041 agcttttatc gctaaatcag ggggatttgc tgtggtaatg ccggatgcca ttctgaagca
     2101 tccggcaggg gagatttaat agcgtgaagg aacgccttcc gggcgtgttt taaagcgacg
     2161 gtgtaaccac atatactgct ctggtgccat catgatgcat ttttcgacca ctttgttcat
     2221 ccacgcggcg gtagtttcgg catcatccag tggcggagaa cactctggcg gcagcataat
     2281 caattgatac cctttgccat ctggcttacg gcgtggaacg aagggcacca gacatgcgcc
     2341 ggacatccgt gccagcatcc aggttccggt cgtggtcgca gcctgctcaa cggcaaataa
     2401 cgggacgaaa acgcttgagc gcgggccgta atcatgatcc ggtgcgtacc agaccacttc
     2461 gccttttttc agggctttaa tcatgccttt taaatctttg cggtcgagca tcgatttatt
     2521 tgagcgcaaa cggccccagg tttgtagcca gtcaatcagt ggattatcgt tcgggcggta
     2581 aacgccaatc cccggttcct gcataccaaa ctgccgcgca cccagctcca gtgtcagaaa
     2641 atggatgcca actaacagga tgccgcgttt ttgcgcctgc acgtcacgaa tgtgttccat
     2701 gccgatcact tccgtccagc gcgcgattcg gcggtccggc cagaaccacg ccatgccggt
     2761 ttccatcagg cccatgccaa cggattcgaa attcttcacc accattttac ggcgttcttg
     2821 ttcgctcatt tccgggaagc acagttccag gttgcgatgc acaatttttg cgcgtcgttt
     2881 cataaaacgt aacgccagtt ttcctaatcc acaaccgagg cggtagataa ccgggtaggg
     2941 caattgcacg actaaccaaa gtacgccaat acccaaccag gttaaccaat aacgcggatg
     3001 aagcagtgcg gtggagaact tgggtagatt cgtcatatca atcctgtttt tcaacctatt
     3061 cgggcaattg tatgtattgt cgcatttttt cgcccgcaac caaaatttgt ggctgaagac
     3121 tgggcgaaat tgccgcgctt gtaaataaca aataattttt aatgcgcaaa tgtagcgtaa
     3181 aatgtgtgga tgttaattat cgataattgc tatatcatgc cgcggatttt tactttccca
     3241 tctcgcagga accgtacacc atgccagtgt tacacaaccg catttccaac gacgcgctaa
     3301 aagccaaaat gttggctgag agcgaaccgc gaaccaccat ttcgttttac aagtatttcc
     3361 acatcgccga tcctaaggcg acccgtgacg ctttatatca gctgtttacc gcgctgaatg
     3421 tttttgggcg agtgtatctg gcgcatgagg gcattaacgc gcaaatcagc gtacctgcga
     3481 gcaatgttga aacatttcgc gcgcagctct gccttcgacc cggctttaga gggtttacgc
     3541 ctgaatatcg cgttggatga tgacgggaaa tccttctggg tactgcgcat gaaggtacgt
     3601 gatcgcattg ttgccgacgg tattgacgat cctcactttg atgccagcaa tgttggtgag
     3661 tatctgcaag cggcggaagt gaacgccatg cttgacgatc ccgatgcact atttatcgac
     3721 atg
//
LOCUS       DAJVUY010000254         3685 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.258, whole genome shotgun sequence.
ACCESSION   DAJVUY010000254 DAJVUY010000000
VERSION     DAJVUY010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.258"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(279..566)
                     /locus_tag="OQQ72_004077"
     CDS             complement(279..566)
                     /locus_tag="OQQ72_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebO family protein"
                     /protein_id="HCS2013611.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
     gene            complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ72_004078"
     CDS             complement(641..784)
                     /gene="mgrB"
                     /locus_tag="OQQ72_004078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HCS2013612.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            943..1182
                     /locus_tag="OQQ72_004079"
     CDS             943..1182
                     /locus_tag="OQQ72_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013613.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG"
     gene            complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ72_004080"
     CDS             complement(1325..2116)
                     /gene="kdgR"
                     /locus_tag="OQQ72_004080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HCS2013614.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            2293..3666
                     /locus_tag="OQQ72_004081"
     CDS             2293..3666
                     /locus_tag="OQQ72_004081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013615.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
BASE COUNT          924 a          904 c          815 g         1042 t
ORIGIN      
        1 taaaataaga aaaattgatg aatgagcaaa aaaatcaaga gagaaacgtt tcgctaataa
       61 ataataccac gcttaatcac aaatccgatg taaacatcct aataaattaa tgaggaaaat
      121 atctttttct gatatcccgt tacgcaaata aataatatga taattatttg aagtcagacc
      181 agagttttaa tttgaagcag ttgcaccatg acagtgcgta taatcaggat gaattgagta
      241 acccttcaac gacggggtta ctcaagattg aggaaggatt atcgttcggc gaccaggcga
      301 ataatatctt cgtcatcaac cgatttttga ctctcaatgg tctttttatc tgctttctct
      361 ggttcgtttg cttcgcacaa acgacgtaaa agtgcatttt gacgtttttg ctgatccagc
      421 aacgcctcaa gcagttcaat ctgttcgtta gtccgtgaac tggcacgatt gataaaaaac
      481 cacaagatga gcccgataag aagaactacc accgatacaa ccaaagacgc aatgttcatc
      541 acgcctgaat ttacaacttc gttcatttca ccacctctga gtagaggcgc tattctacca
      601 ctgctggaga ggaagaaaat ctagtgctga aaaaatgata tcaccacggg ataaactggt
      661 taatggcaca aattccgctg aaaaattgta catcctgatc gcacatcatg ttgaatacct
      721 gcgcccaaag cagcaagcaa gccaacacca cgacaaccag aacgacccat cgaaactttt
      781 tcactccaat ctccgcttca cctaccttat gtcattaaac tagcatgcgt tagttaaaca
      841 gcgcctaact atgtcgatat tcgtgctttt tcggaatgag tagcttgctt cagcgcatat
      901 tgccgctacg attaagcgaa cataaaaaga gaagaggttg taatgcgatt catcattcgc
      961 acagttatgc tgatagcact ggtatggata ggattattac tcagcggata tggcgttttg
     1021 attggaagca aagagaatgc cgcaggatta ggtttgcaat gtacctatct gactgccaga
     1081 ggcaccagca cggtacaata cttgcacact aaaagtggtt tcttggggat aacagattgc
     1141 ccactgttac gtaaaagcaa tatcgtggtc gataatggtt aagggtaata aataaccaga
     1201 ttctcactca tgagtaaaat attcttatag caagcgcgtt taatataacg caccttcaac
     1261 tttatttttc tcatgctaaa taaagaacct gtctgtttga tattccgaca ggttcttact
     1321 ctcatcagaa cggatagtcg tgataaccca tttgggcaga aattttgcgc gctgcggtat
     1381 gcaacattgc gacatattcc tgtaaacgct cttcagagaa acgcaacgtc gggaaggaga
     1441 tgctcaaacc ggcaatgacc acgccaaagc gatcaaatac cggtaccgca atgcatcgca
     1501 gcccttcttc ctgctcttcg ttatcttcgc catacccctg ctcgcgcacc tggtccagaa
     1561 cgggtaataa cgcttctgta ctggtgatgg tccgctcggt actgcgttta tactccacgc
     1621 cctcaagaat ttgcttcact tcatcgcgat cgcgccatgc cagcagtacc ttaccaatcg
     1681 cggtgctgta cagcggatta cgacgcccaa tccgtgaata catgcgcaaa ttgtacatag
     1741 agtcaatttt gtgaatgtaa acaatactgt cttcgtccag tgcgccgagg tggatagttt
     1801 ctttggtcag gcgggagatc tcacgcatct ggatatctgc gctacgaatt aaatcgacgt
     1861 tttgtaacgc gcgagcgccc agttcaaaca atttcagggt cagggaatat ttctccgact
     1921 ccccttcctg cgccacataa cctaaggttt tcatggtctg taaaaagcga taaacggtgc
     1981 tttttgacat catgacgcgc tgcgacagct cggttatccc tatttcgcgc tcttcaccca
     2041 gcgcctgcaa aatgccaaaa acttttagca cggaagatac agaatcaggc tgtttatcca
     2101 gatctgcgtt agccatttat cacctcattg cgagtgtttt ataaaaatca gaactgtttt
     2161 ttattataat ttcgcaccag gggggtcgca atccatcttt tgccggttag ttacaattct
     2221 gcgacatcca ccgtgaatat cagtgctaga atcatacccc tgttgattat tcaccaaaga
     2281 tataaaattc ctatgccaaa agttcaggcc gacggcctgc cattgcccca gcgatacggt
     2341 gcgatattaa ccattgtgat tggtatttcg atggctgtcc ttgacggcgc aatcgccaac
     2401 gtcgccctgc caacaatcgc cacggacctt catgccacgc cagccagttc catctgggta
     2461 gtgaacgcct atcaaatcgc cattgtcatc tccctgctct cgttttcgtt tctgggcgat
     2521 atgtttggct atcgacgtat ttataaatgc ggtctggtcg tttttctgtt gtcttcactg
     2581 ttctgcgccc tttctgattc gctgcaaatg ctcacccttg cgcgtgtcat acaaggtttc
     2641 ggcggtgcag cgttgatgag cgttaatacc gcacttatcc gcctgatcta tccacaacgt
     2701 tttctgggga gagggatggg cataaactcg tttattgttg ccgtctcttc tgctgccggg
     2761 ccgacaattg ctgcagcaat cctctccatc gcatcctgga aatggttatt tttaatcaac
     2821 gtaccgttag gtattatcgc cctgcttctg gcgatgcgtt ttctgccacc caatggttct
     2881 cgcgccagta aaccccgttt cgacctgccc agcgccgtga tgaacgcgtt aaccttcggc
     2941 ctgcttatca ctgcgttgag tggtttcgct caggggcaat cgctgacgtt aattgctgcg
     3001 gaactggtgg taatggttgt tgttggtatt ttctttattc gccgccagct ttctcttccc
     3061 gtaccgctgc taccggtgga tttactgcgt atcccgctgt tttcactttc tatttgcaca
     3121 tctgtttgct ctttctgcgc acaaatgctg gcaatggttt ccctgccctt ttacctgcaa
     3181 accgtgctcg ggcgtagtga agtcgaaaca ggtttacttc tgacaccgtg gccgttagca
     3241 acgatggtga tggctccgtt ggcaggctat ttgattgaac gcgtacatgc aggattgctg
     3301 ggtgctctag ggttgttcat catggctgcg gggctttttt ccctggttct gctgcccgcg
     3361 tcacctgcgg atatcaatat tatctggccg atgatcttat gtggcgctgg atttggcttg
     3421 ttccagtcac ccaataacca caccattatt acctccgctc ctcgcgaacg tagcggtgga
     3481 gccagtggca tgttaggaac ggctcgtcta ctgggtcaga gtagcggcgc ggcactggtg
     3541 gcgctgatgc taaatcagtt cggtgataat ggtacgcacg tttcgctgat ggctgcggct
     3601 attctggcag tgattgctgc ctgtgtcagt ggtttacgta tcactcagcc acgatccagg
     3661 gcataaaaaa agcgcgtcga tcagg
//
LOCUS       DAJVUY010000255         3680 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.259, whole genome shotgun sequence.
ACCESSION   DAJVUY010000255 DAJVUY010000000
VERSION     DAJVUY010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3680
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.259"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ72_004082"
     CDS             complement(168..482)
                     /gene="fliE"
                     /locus_tag="OQQ72_004082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HCS2013616.1"
                     /translation="MSAIQGIEGVISQLQATAMSARAQDSLPQPTISFAGQLHAALDR
                     ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM
                     QV"
     gene            697..2355
                     /gene="fliF"
                     /locus_tag="OQQ72_004083"
     CDS             697..2355
                     /gene="fliF"
                     /locus_tag="OQQ72_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HCS2013617.1"
                     /translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK
                     APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL
                     PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS
                     LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT
                     LSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE
                     EQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN
                     RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK
                     PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ
                     LLAAGRWLLVLLVAWLLWRKAVRPQLTSRAEAMKAVQQQAQAREEVEDAVEVRLSKDE
                     QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE"
     gene            2348..3343
                     /gene="fliG"
                     /locus_tag="OQQ72_004084"
     CDS             2348..3343
                     /gene="fliG"
                     /locus_tag="OQQ72_004084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HCS2013618.1"
                     /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV
                     TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD
                     TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR
                     IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
                     REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR
                     NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV"
     gene            3336..>3680
                     /gene="fliH"
                     /locus_tag="OQQ72_004085"
     CDS             3336..>3680
                     /gene="fliH"
                     /locus_tag="OQQ72_004085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416450.2"
                     /note="binds to and inhibits the function of flagella
                     specific ATPase FliI; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HCS2013619.1"
                     /translation="MSDNLPWKTWTPDDLAPPQAEFVPMVEPEETIIEEAEPSLEQQL
                     AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAKAKSQQAPIHARMQQLV
                     SEFQTTLDALDSV"
BASE COUNT          925 a          967 c         1030 g          758 t
ORIGIN      
        1 cttcctatga gcaaagcgaa gacaaaacat gttatcgcgt ttacggatcg tggatggcag
       61 aaaactttca ggatcaggta tccattttaa accagaaata gggtgagttt gtcccatcca
      121 tgccccacgc gggcagatgg gatgtaatta ccaacaggtt acaaaaccta cacctgcatg
      181 gacatcactt cctgatacgc cgccaccagc ttattacgca cctgaatccc catttgcata
      241 gaaactgagg ctttttgcat atcggtcatc acatcgttta acgccacgcc gggttcaccg
      301 agggtgaatt tttctgcctg cgtgcgggcg gctgtttgtg tatcgcttat gcgatcgagc
      361 gcggcgtgca gctgcccggc aaaactaatg gtcggttgcg gcagtgaatc ctgcgcacgc
      421 gcactcatcg ccgtagcctg taactggctg ataacccctt caatcccctg tatcgctgac
      481 attttcgtct cctggataat ttctggtagc aaagcctacc agtaagtcaa taagacaaag
      541 gcgctaaata gcaacaaaaa aacgggttta ttggcggata gaaaaaaacg aaagcacaaa
      601 taatggcagc gtcaattttt cgagtttgct gacccgggag tgagtcttgt tccactttgc
      661 caataacgcc gtccataatc agccacgagg tgcgcgatga atgcgactgc agcccagaca
      721 aaatctcttg agtggcttaa tcgcctgcgt gcgaatccga aaattccatt gattgttgcc
      781 ggttccgcgg cagtggcggt catggtcgca ctgatcctgt gggcgaaagc ccccgactac
      841 cgcacattat tcagcaatct ttccgatcag gatggtggcg caattgtcag ccaactgacg
      901 caaatgaata ttccttaccg cttcagcgaa gccagcggcg ctattgaagt tccggcagat
      961 aaagttcacg agctgcgtct gcgcctggcg caacaaggtt tgcccaaagg cggcgcggtc
     1021 ggtttcgaac tactcgatca ggaaaagttt ggtatcagcc agttcagcga acaggtgaat
     1081 tatcagcggg cgctggaagg cgagctttct cgtaccatcg aaactatcgg cccggtaaaa
     1141 ggggcgcgcg tacatctggc aatgccgaaa ccgtctttat tcgtccgtga acaaaaatcc
     1201 ccttctgcat cggtgacggt aaatctatta cccggccgcg cactcgatga agggcaaatt
     1261 agcgccattg tacatctggt ttccagcgcg gttgctggtc tgccgccggg gaacgtcacg
     1321 ctggtggatc agggtggaca tctgttaacc ctgtccaata ccagcgggcg cgatcttaat
     1381 gacgctcagt tgaaatatgc cagcgatgtc gaaggccgga ttcagcggcg tattgaagcg
     1441 atcctgtcgc caattgttgg taacggtaat attcacgccc aggtcacggc gcaactggac
     1501 ttcgccagta aagaacaaac ggaagaacag tatcgcccta acggtgatga atctcatgcg
     1561 gcgcttcgtt cacgccagct taatgagagc gagcaaagcg gttccggtta tccgggcggc
     1621 gtaccggggg cgttgtcgaa tcaaccggca cctgcgaata acgcgccaat cagcacgcct
     1681 ccggcaaatc aaaataaccg ccagcagcag gcgagcacca ccagcaatag cgggccgcgt
     1741 agcacacagc ggaatgaaac cagtaactac gaagtcgatc gcaccattcg tcataccaaa
     1801 atgaacgtgg gcgatgtgca acgtctgtca gtcgcggtag tggtaaatta caaaaccttg
     1861 ccagacggta aaccattgcc tctcagcaac gaacagatga agcaaattga agatctgacc
     1921 cgcgaggcga tgggcttttc tgaaaaacgc ggtgactcgc tcaatgtcgt taactcgccg
     1981 ttcaatagca gtgacgaaag cggcggagaa ctgccgttct ggcaacagca agcgtttatc
     2041 gatcagttgc tggctgccgg tcgctggttg ctggtactgc tggtggcgtg gctgctgtgg
     2101 cggaaagcgg tacgcccgca gttaacaagt cgcgccgagg cgatgaaagc tgtacagcaa
     2161 caggcgcagg cccgtgagga agtggaagat gcggtggaag tccgcctgag caaagacgaa
     2221 caactccaac aacgacgcgc taaccaacgt ctgggggcag aagtcatgag ccagcgtatc
     2281 cgtgaaatgt ctgataacga tccgcgcgtg gtggcgctgg tcattcgcca gtggataaat
     2341 aacgatcatg agtaacctga caggcaccga taaaagcgtc atcctgctga tgaccattgg
     2401 cgaagaccgg gcggcagagg tgttcaagca cctctcccag cgcgaagtgc aaaccctgag
     2461 cgctgcaatg gcgaacgtca cgcagatctc caacaagcag ctaaccgatg tgctggcgga
     2521 gtttgagcaa gaagctgaac agtttgccgc actgaatatc aacgccaacg attatctgcg
     2581 ttcggtattg gtcaaagctc tgggtgagga acgtgccgcc agcctgctgg aagatattct
     2641 cgaaactcgc gataccgcca gcggtattga aacgctcaac tttatggagc cgcagagtgc
     2701 cgccgatctg attcgcgatg agcatccgca aattatcgcc accattctgg tgcatctgaa
     2761 gcgcgcccag gccgccgata ttctggcgtt gttcgatgaa cgtctgcgcc acgacgtgat
     2821 gttgcgtatc gccacctttg gcggcgtgca gccagccgcg ctggcggaac tgaccgaagt
     2881 actgaatggc ttgctcgacg gtcagaatct caagcgcagc aaaatgggcg gcgtgagaac
     2941 ggcagccgaa attatcaacc tgatgaaaac tcagcaggaa gaagccgtta ttaccgccgt
     3001 gcgcgaattc gacggcgagc tggcgcaaaa aattatcgac gagatgttcc tgttcgaaaa
     3061 tctggtggat gtcgacgatc gcagcattca gcgtctgttg caggaagtgg attccgaatc
     3121 gctgttgatc gcgctgaaag gggccgagca gccactgcgc gagaaattcc tgcgcaatat
     3181 gtcgcagcgt gccgccgata ttctgcgcga cgatctcgcc aaccgtggtc cggtgcgtct
     3241 gtcgcaggtg gaaaacgaac agaaagcgat tctgctgatt gtgcgccgcc ttgccgaaac
     3301 tggcgagatg gtaattggca gcggcgagga tacctatgtc tgataatctg ccgtggaaaa
     3361 cctggacgcc ggacgatctc gcgccaccac aggcagagtt tgtgcccatg gtcgagccgg
     3421 aagaaaccat cattgaagag gccgaaccca gccttgagca gcaactggcg caactgcaaa
     3481 tgcaggccca tgagcaaggt tatcaggcgg ggattgccga aggtcgccag caaggtcatg
     3541 agcagggcta tcaggaagga ctggcccagg ggctggagca aggtctggca aaggcgaagt
     3601 ctcaacaagc gccaattcat gcccggatgc agcaactggt cagcgaattt caaactaccc
     3661 ttgatgcgct tgatagtgtg
//
LOCUS       DAJVUY010000256         3604 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.260, whole genome shotgun sequence.
ACCESSION   DAJVUY010000256 DAJVUY010000000
VERSION     DAJVUY010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3604
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.260"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..348
                     /locus_tag="OQQ72_004086"
     CDS             <1..348
                     /locus_tag="OQQ72_004086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS2013620.1"
                     /translation="GIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVL
                     LCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFT
                     GICNDLAAASTFV"
     gene            285..887
                     /locus_tag="OQQ72_004087"
     CDS             285..887
                     /locus_tag="OQQ72_004087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS2013621.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSD
                     GWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVA
                     IWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR"
     gene            948..>3604
                     /locus_tag="OQQ72_004088"
     CDS             948..>3604
                     /locus_tag="OQQ72_004088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS2013622.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS
                     VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRLTFGVQALVENTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCR
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNVVEVNWIDPDNGHETATELVEDAQAILRYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD
                     REITLPSSCTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ
                     LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITAVPKLAVYDP
                     TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS
                     AFVEAVGRASDDAEGYLSFYKGLINNTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN
                     EITQTVNKKLENQSAAIQQIQKVQVDTNN"
BASE COUNT          810 a          904 c         1156 g          734 t
ORIGIN      
        1 gggattgaga tgccggattt tcatcgcggg gatgactggt ggcgtcacgg tcagaatctc
       61 tatctggata atctggaggc cacagggctg tatcaggtgc cgttgtcatc agcacaaccg
      121 ggcgatgtgc tgctgtgctg ttttggttca tcggtgccga atcatgccgc catttactgc
      181 ggcgacggtg agctgctgca ccatattcct gaacaactga gtaaacgaga gaggtatacc
      241 gacaaatggc agcgacgcac acactccctc tggcgtcacc gggaatggca cgcatctgcc
      301 tttacgggga tttgcaacga tttggccgcc gcatcgacct tcgtgtgaaa acgggggctg
      361 aagccatccg cgcactggcc acacagctcc cggcgtttcg tcagaaactg agtgacggct
      421 ggtatcaggt gcgcattgcc gggcgtgatg caggtgaaac cgaattgtct gcccgtctta
      481 atgagccgct ggcaaatggt gcagtgatcc acatagtacc gcgtctggtg ggagctaaaa
      541 gtggcggtgt gtttcaggcg gtgctggggg cagctgttat ggcggttgct atatggatgc
      601 cgggggtagg aattatggcg agtaatctgc tgttttctct cggtgccagt atgacgcttg
      661 gcggtgttgc acagatgctg gcaccgaaag ccagaactcc ccgtacacag acaacggata
      721 acggcaaaca gaacacctgt ttctcctcac tggataacat ggttgcccag ggcaatgttc
      781 tgcctgttct gtacggtgaa atgcgcgtgg ggtcgcgggt ggtatctcag gagatcagca
      841 cggcagacga aggggatggt ggtcaggttg tggtgattgg tcgctgatgc aaaatgtttc
      901 atgtgaaacc gcctgcgggc ggttttgtcg tttatggagc gtgaggaatg ggtaaaggca
      961 gcagtaaggg gcataccccg cgcgaagcga aggacaacct gaaatccacg cagttgctga
     1021 gtgtgattga tgccatcagc gaagggccgg ttgacggtcc ggtggatgga ttaaaaagcg
     1081 tgctgctgaa cggtacgcca gtcctggaca gcgaggggaa gacaaacttt tccggtgtta
     1141 cggtggtgtt ccgcgccggc gagcaggagc agacaccgcc ggaggggttt gaatcttccg
     1201 gctcagagac tgtgctgggt acggaagtga aatacgacac gccgatcacc cggaccatca
     1261 cgtcggcaaa cattgatcgt ctgcgcctga ccttcggtgt gcaggcactg gtggaaaaca
     1321 cctcaaaggg ggaccggaat ccgtcggaag tccgcctgct ggttcagata cagcgtaacg
     1381 gtggctgggt gacggaaaaa gacatcacca ttaagggcaa aaccacttcg cagtatctgg
     1441 cctcggtggt ggtgggtaac ctgccgccgc gcccgtttaa tatccggatg cgcaggatga
     1501 caccggacag caccacagac cagctgcaga acaaaacgct ctggtcgtcg tacaccgaaa
     1561 tcatcgatgt gaaacagtgc tacccgaaca cggcgctggt cggcgtgcag gtggattcag
     1621 agcagttcgg taaccagcag gtgagtcgca attatcatct tcgcgggcgc attctgcagg
     1681 tgccgtcgaa ctataacccg cagacgcggc aatacagcgg tatctgggac ggaacgctta
     1741 agccagcata cagcaacaac atggcctggt gtcggtggga catgctcact catccgcgct
     1801 acggcatggg gaaacgtctt ggtgcggcag atgtggacaa atgggcgctg tatgtcatcg
     1861 gccagtactg cgaccagtca gtgccggacg gatttggcgg cacggagccg cgcatcacct
     1921 gtaacgctta cctgaccaca cagcgtaagg cgtgggatgt tctcagtgat ttctgctcgg
     1981 cgatgcgctg tatgccggta tggaacgggc agacgctgac gttcgtgcag gaccgaccgt
     2041 cggataaagt gtggacctat aaccgcagta atgtggtgat gccggatgat ggcgcgccgt
     2101 tccgctacag cttcagcgcc ctgaaggacc gccataatgt cgttgaggtg aactggattg
     2161 atccggacaa cggtcatgag acggcgacag agcttgtgga ggacgcgcag gccattctcc
     2221 gttacggtcg taacgtcacg aagatggatg cctttggctg taccagccgg ggacaggcgc
     2281 accgcgccgg gctgtggctg attaaaacgg aactgctgga aacgcagacc gtggacttca
     2341 gcgtcggcgc agaagggctt cgccatgtac cgggtgatgt cattgaaatc tgcgatgatg
     2401 attatgccgg tatcagcacc ggtggtcgcg tactggcggt gaacagccag acccggacgc
     2461 tgacgctcga ccgtgaaatc acgctgccgt cctcctgtac cacgctgata agcctggttg
     2521 acggaaatgg caatccggtc agcgtggagg ttcagtccgt caccgacggc gtgaaggtga
     2581 aagtgagccg ggttcctgac ggcgttgcag aatacagcgt gtgggggctg aagctgccga
     2641 cgctgcgcca gcgcctgttc cgctgcgtga gtatccgtga gaacgacgac ggcacgtatg
     2701 ccatcaccgc cgtgcagcat gtgccggaaa aagaggccat cgtggataac ggggcacact
     2761 ttgacggtga ccggcgcggc acggtgaatg gtgtcacgcc gccagcggtg cagcatctga
     2821 ccgccgaagt caccgcagac agcggggaat atcaggtgct ggcgcgatgg gacacgccga
     2881 aggtggtgaa gggtgtgagc ttcctgcttc gcctgaccgt ggcagcggac gacggcagtg
     2941 agcggctggt cagcacagcc aggacgacgg aaaccacata ccgcttcagg cagctggcgc
     3001 tggggaatta cagtctgaca gtccgggcgg taaatgcccg ggggcagcag ggcgatccgg
     3061 cgtcggtatc gttccggatt gcggcaccgg cagcgcctgt cactattgaa ctgataccgg
     3121 ggtattttca gataacggcg gtcccgaaac tggctgtata cgacccgacg gtgcagtttg
     3181 agttctggtt ttcggaaaag cggattgcgg atatcaggca ggttgaaacc agcgcccgct
     3241 atcttggcac ggcgctgtac tggatagccg ccagtatcaa tatcaggccg ggccatgatt
     3301 attattttta cgttcgcagt gtgaacaccg ttggcaaatc ggcatttgtg gaggccgtcg
     3361 gtcgggcgag cgatgatgcg gaaggttatc tgagttttta taaagggttg atcaataaca
     3421 cgcatctcgg caaggagttg tggacgcaga ttgataacgg tcagcttgcg ccggacctga
     3481 ctgaaatcag gacgtccatt acgaatgtca gcaatgaaat cacgcaaacc gtcaataaaa
     3541 aactggaaaa tcagagtgct gcaatccagc agatacagaa agttcaggtt gatacaaata
     3601 ataa
//
LOCUS       DAJVUY010000257         3599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.261, whole genome shotgun sequence.
ACCESSION   DAJVUY010000257 DAJVUY010000000
VERSION     DAJVUY010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.261"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..372
                     /locus_tag="OQQ72_004089"
     CDS             <1..372
                     /locus_tag="OQQ72_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013623.1"
                     /translation="WRIAEWPGEGGEGHLSSFFVQTDKASINVAYHHTVNQQKELGTF
                     GAFDHDWHTLAFKFKGSNSINVTPVLDGVDGQAFDLVKWANTANGLNRFVITDITGSA
                     ETYPVLIDTVEVKANKAGAAA"
     gene            512..694
                     /locus_tag="OQQ72_004090"
     CDS             512..694
                     /locus_tag="OQQ72_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001304601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HCS2013624.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            618..965
                     /locus_tag="OQQ72_004091"
     CDS             618..965
                     /locus_tag="OQQ72_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HCS2013625.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVLRSEEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSAS
                     DGGEPTPDSDMMM"
     gene            1042..1257
                     /locus_tag="OQQ72_004092"
     CDS             1042..1257
                     /locus_tag="OQQ72_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS2013626.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            1262..1606
                     /locus_tag="OQQ72_004093"
     CDS             1262..1606
                     /locus_tag="OQQ72_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS2013627.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            1657..2190
                     /locus_tag="OQQ72_004094"
     CDS             1657..2190
                     /locus_tag="OQQ72_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS2013628.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            2346..2528
                     /locus_tag="OQQ72_004095"
     CDS             2346..2528
                     /locus_tag="OQQ72_004095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013629.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWVAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            2855..3007
                     /locus_tag="OQQ72_004096"
     CDS             2855..3007
                     /locus_tag="OQQ72_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001228697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rz1 family lipoprotein"
                     /protein_id="HCS2013630.1"
                     /translation="MLPLVVSACGSTPPAPVPCVKPPAPPEWIMQPAPDWQTPLNGII
                     SPSESG"
     gene            3093..3317
                     /locus_tag="OQQ72_004097"
     CDS             3093..3317
                     /locus_tag="OQQ72_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013631.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
BASE COUNT          925 a          789 c         1022 g          863 t
ORIGIN      
        1 tggcgaatag cggaatggcc gggtgagggt ggtgaaggcc atctgagttc tttctttgtc
       61 cagacagata aagccagtat taatgttgca taccatcata cagttaatca acaaaaagaa
      121 cttggcacgt ttggcgcatt cgaccatgac tggcatacgc ttgcatttaa atttaagggc
      181 agtaacagca ttaatgttac tccggtgctt gatggtgtgg atggacaggc gtttgacctg
      241 gtgaaatggg ccaatactgc taatggactc aacaggtttg tcattacgga tattacaggt
      301 agtgcagaaa cctaccctgt acttattgat acggtggaag ttaaagcaaa caaagctgga
      361 gcagccgcat aattgctaaa aaaagccgcc agcggcagga atggaagctg gcggaggtaa
      421 tcccaatgga gaatgtaaag aaaagatgct ttcgtacatt ggttttttaa atgaaaacaa
      481 ttctcattgt caaccataac ggtaagaaat tatgacattt attcatcagg tgatgctgta
      541 cttctgtacg gcggtctgtg tgctgtatct tctttcgggt gggtacaggg ctgtgcgcga
      601 tttctggtgc aggcagattg ataaaagggc cgctgagaaa atcagcgcca gtcagtcagc
      661 cggaagcaaa cccgaagaac ccgttactcc ttaacaaccc ctttcagcga gaaaatccca
      721 tgtcagaaat cacatccctg gtcactgcag aggcagtgaa ggaagtcctg cgctctgaag
      781 aagtccggag cgcactgaaa cagaaacttc gccagaatct tgagtcgcgt cttgatgcag
      841 aagtggatgc cattctggat gagctgctgg gcgtagcagc ggttcctgag ccggaaggta
      901 tcgcgggtga cgggagtgct tcagatggcg gtgaacctac acctgacagc gacatgatga
      961 tgtaagcatg cgcaagggac catcggtgtg tgccggtggt ctttatattg ttgtgagctt
     1021 ccggattgcg ggagacgggg tatgtaccag atggaaaaaa tcacaacagg tgtgtcatac
     1081 accacgtcag cggtgggaac gggctactgg ttcctgcagt tgctggacag gttttccccg
     1141 tctcagtggg cggcaatagg cgtgctgggg agtctgttgt ttgggctgct gacatatctg
     1201 actaacctgt atttcaaaat cagagaggac cgtcgtaagg cggcgcgggg agagtaaagc
     1261 gatgaagaaa aaatacgaac tggttgttaa agggataaat aattacccga ataagattac
     1321 tgttactgtg gcactggaaa ttggtgggta tccgtcactg ttgttgccag atgtggcgat
     1381 tagtcttgac cgtactgaag atgccacgct ggagttttac gaagctgagg cgaaaaagca
     1441 ggcgaagcag tttttcatgg atgttgctgc cgggttatgt gaaggggatg gtccgttgcc
     1501 ggaaaagcgc cccgtaattt tagaggcgca ggatgtgttg ataacctaca gaggaaaact
     1561 accgggaata attactggtt ctctgaagac tccaccgctg gcctgaagac ttaacatatc
     1621 cagggatttg aaatcgataa accctgataa atatccatga acaccaaaat caaatacggc
     1681 ctgtcggctg ccgttctggc gctgattgcc gcaggtgcgc ctgcgcctga aatcctcgac
     1741 cagtttctgg atgaaaagga aggtaaccac accacggcat accgtgatgg cgcgggtatc
     1801 tggaccatct gccgcggtgc catcctggtg gatagtaaac ctgtcgtccc gggcatgaag
     1861 ttgtcgaagg aaaaatgcga ccaggtcaac gccattgagc gtgataaggc gctggcatgg
     1921 gtggagcgca atattaaagt gccgctgacc gaaccccaga aagcgggtat cgcgtcattt
     1981 tgtccctata acattggccc cggtaagtgt ttcccgtcga cgttttacag acggattaat
     2041 gctggtgacc gcaggggagc atgcgaagcg attcgctggt ggattaagga cggtggcaga
     2101 gactgccgta tccgctcaaa taattgctac ggtcaggtat cccggcgaga ccaggaaagt
     2161 gcgctggcgt gctgggacat cgacagataa gcagaatatt ttgctgaaaa taaggcatga
     2221 gcacgcggac ggataacacg aaatcctgcg aactggcgaa acgtaagtga ataaaagtaa
     2281 aaaccccgtt tgttggcacc aggcggggtt ttgtgtttct gaccttgagt aaggcaaggg
     2341 agaacatggc gaagtataaa cgaattctgt tgaggttgac catgaaaaac ggccttgaac
     2401 tgaaagcgcc tgtaactgat gacatcagca gagcactggc ttttgccatt aagtgggtgg
     2461 cggtcggtgt tgctgtgtcc ccgatgctgt atgggctggc aaaactggtc attgcgttga
     2521 aatcgtgaag ggaggattaa gcatgtcaga caaactcata acgctggcga agatcctctg
     2581 tgtaattgtc ggcatttcat tttcactaat gctggttgct ctttttcttt ccatggcctg
     2641 gatgatgttg tcttcgtcgg ggctgctggg gtgaacataa accgaatgct ttccgcgttt
     2701 accgttattc tgctggtggt ctgtggtgcg ctgtggctgg caacagacca ttaccgtgat
     2761 aacgccatca cctacaaagc gcagcgcgat aaaaaagcca gagagctgga gctggcaaac
     2821 gcaaccatta ctgacatgca gcagcgccag cgtgatgttg ccgctggtcg taagcgcctg
     2881 cggatcaacg ccacctgctc cggtaccgtg cgtgaagcca ccggcacctc cggaatggat
     2941 aatgcaaccg gcccccgact ggcagacacc gctgaacggg attatttcac cctcagagag
     3001 cggttgatga caatgcagaa gcaactggaa ggggcgcagg aatatatccg cactcagtgt
     3061 attaactagt atttttgtta tccggagaat gcatgaagaa attactggta accgtaaagc
     3121 cttttcaggg aacaattccg ttccgtattt tgcagcgtgg tcgtgttctt gttgaaggtt
     3181 cgttcagtgg taaatgtacg caattacact cccggacctt tcaggtgaat gccacgaatg
     3241 aagagctaac cgttgagtgt acgatgaatg ccgctaaatg ccgcatggta tccgctgcat
     3301 tacagccagt gtgttgagcg accttattaa ccatgcgcgg tattgtcgcc gtatccccgc
     3361 attaacagag accgcagccc gaccgggaga ctcctctgcg cgagtgtgcg gggataatca
     3421 aaaacgatac acaccggggt ttaccgcgtt aacggagcgc ggcgttgtcc cctcatggtc
     3481 gctggtccgg tgcgatggtg gaagaaaccg gacgatgtgt tacctcgcaa gctctgttat
     3541 gtcatgtgtc tgatttgtga tttaagtcgg ataattgtcg ttgccattaa gcagaggat
//
LOCUS       DAJVUY010000258         3541 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.262, whole genome shotgun sequence.
ACCESSION   DAJVUY010000258 DAJVUY010000000
VERSION     DAJVUY010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.262"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            233..544
                     /locus_tag="OQQ72_004098"
     CDS             233..544
                     /locus_tag="OQQ72_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS2013632.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            544..831
                     /locus_tag="OQQ72_004099"
     CDS             544..831
                     /locus_tag="OQQ72_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS2013633.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1368..2555)
                     /locus_tag="OQQ72_004100"
     CDS             complement(1368..2555)
                     /locus_tag="OQQ72_004100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HCS2013634.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2555..2920)
                     /locus_tag="OQQ72_004101"
     CDS             complement(2555..2920)
                     /locus_tag="OQQ72_004101"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013635.1"
                     /translation="MARSAKPRKRKPASQRSELPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            3005..3334
                     /locus_tag="OQQ72_004102"
                     /pseudo
     CDS             3005..3334
                     /locus_tag="OQQ72_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146522.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
     gene            3364..3447
                     /locus_tag="OQQ72_004103"
                     /pseudo
     CDS             3364..3447
                     /locus_tag="OQQ72_004103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3447..>3541
                     /locus_tag="OQQ72_004104"
     CDS             3447..>3541
                     /locus_tag="OQQ72_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS2013636.1"
                     /translation="MEQKWTSKALSDLARLYDFLVLASKPAAARMV"
BASE COUNT          926 a          920 c          835 g          860 t
ORIGIN      
        1 taaggtgaaa tctgtcaatc agtaccggct tacgccgggc ttcggcggtt ttactcctgt
       61 gccatatgca acaacggagt gccgccttcc atgccgctaa cgcggcatca aaaaatccct
      121 cttctccagt tgcccccctc cgaactcaga gtgtattttc atttattgat gaaatttact
      181 gtttgcgcaa ttttcctgtt ttagtgtatt ttgtcattct ggaggctata atatgtttaa
      241 tgtgattact cacccggccg cactggatga acttctagaa ttaccagaca atctgcgtgg
      301 tcgtatgacc agactgattg aacggctgga acaggaaggt aacaaaatga aaatgcctca
      361 cagccgtgta attggcggag ggctttttga actgagagtc ggggataaaa atatcgcaag
      421 gacactgtac gcttatgcaa cgggtaacga aatctatctg ctgcatgcat ttgtgaaaaa
      481 aacgcaaaag acaccaacga aagctattga aattgccagg atgcgtctga aggagatgaa
      541 ctgatgaaag taaaaggtgt tccattcagc caggtaaagc aaaaactact cagtactcca
      601 gaagctgtca aagggtatga ggatgctgac aaagaactgg agatggtgga aatgttatac
      661 gaaatgagag aaaaagcggg attaacaaag tcagcactgg ccgaacgaat ggggttacgc
      721 ccgtcagcca tcagtcgcct ggaaagtaac cctttagggg ccagcatgaa aactttgaca
      781 aaatatgctc atgcctgtgg cgcaaccatc gatattcacg ctgtctattg aggggtccgc
      841 ttggaattcg gaaaataaac cacgttaaga ctatttttta gataaatgac tttcaggaat
      901 cgccaagatg gcgggataac agcggttttg gtgtcctaaa tcgtacaatt ctgtacatcc
      961 acgcaaggga atgtacggaa gtaagccaga cggttatcgg acggtcagaa catttcgtac
     1021 agcctttacg ttcagtgagt tagctggcct ggacgtaacc actcgttagc tcaattctct
     1081 tagcgtggga aaatttccga attccaagcg gaccccttta tccttgcccc gctgaatgag
     1141 gaaacgctgt tccgggggat tatgctgaac gtcttccgtt catcgatagg aattaaaacc
     1201 ccaaaaagat taaaaaacac cacaaaacgg atgtttcttc aacaccactt ttgctcatat
     1261 gaacggaacc gacgattaaa ctggatggct ctgattgatt cagggtatga atggcggttt
     1321 tttgctccgt ttccctcaaa atggacgcta cttaccctct gcggctctca gccgcaccac
     1381 cgcatccggg ccagcggctc atgcatcagg acctgctctg ccagacggta gccccgcttc
     1441 agccccgtaa aacgcatctg actcccgcac agcacgcact tcagcgggtc aaccttcagt
     1501 aacctctgat acatccctct ccaggtgatt tgcatcgccg tttttctcac tgtctccgtt
     1561 atgatgtaca ccacttcttc cagtaaccgc cgtttcgccg gactcagaaa accgtagtac
     1621 ctcaccatac ggaacccctt atccgccaca tgccaggaga acctttccat gaactcatct
     1681 ccactcatca acaggtattc ttcccgtttt gttcggtgac tgttgtaacg cagtccgatt
     1741 tcatcctgac cggcataatg ctccagacga ctcaccggca ccggtggctt tttcaggtaa
     1801 gagccaaagt acaccgccac atgggtggca ttatccatca cccgggatac gttgacattc
     1861 cagccacggc ggtaatgcgt gtccaggaag cgattccatt cccgtttact gcttccttct
     1921 gctgccagcg catccggcat caccaggtca gggtatttcc gtgacagtaa ccgtgttatc
     1981 cggtagcgcc acatgctcat caccttacgg gcgtaaaaat gaagattttt ccaggtgtgg
     2041 cccgacgtca caccaccggc agttgtcgat aaatggatat gcggatgcca ctgctggtca
     2101 cgcccccatg tgtggatcac cgtgaatatc ctcggctcca catctgcctg atggcagatt
     2161 tccagtatca catccgctgc aatgcggctc atctctgcca gcaaccaccg gttgtggaac
     2221 accagggacc agtactggca gggtaacgtg aacacaatat gctgccatgg gcagtcgggg
     2281 accaggctca gcagatactg tatccactgt gcgccagcct tcaccccgca gtgcgggcag
     2341 gagcggcttt tacaccggaa gcagaccttt tttgtatggc aacagtccgg tgatgaacag
     2401 caccactgtg tataccccat cagtgtggtc ccgcacgcca tgattttggt caccgactca
     2461 atcaccaccg gacgtactgc cccttccggc tgcttctcca gccagttaag ccagcggttt
     2521 ccctgctgaa agatatcggc aaaacgggga agcatcagaa gggcggggcg actccgtccg
     2581 gccagtgaac cgtgccacac tccgggcagt acataccgcc ggcgctgata ccggaaagaa
     2641 tggtcgcaaa ttcccgctcc gtgcagcggg caatttccgg atacccttcg tcatcaacac
     2701 gtacaaacca gaagaccagt tttttgtttc cggcatccac aaagaacgga atattcaggt
     2761 ctgcgcaaca ctcaacggca tcatcaaaac tatcaaagcg cagaacttct gcgtcttctt
     2821 cgtcaaaaaa atcatcttcg tgaagcttca cgacatagcg gggaagttcg cttctttgag
     2881 aggcgggttt acgtttacgg ggtttagctg aacgggccat ataaccacct gaaagacaat
     2941 gacattgcct gtttttataa cggtaattgc agaccatgac aagccgcagc cgtcaggctg
     3001 cctactcgag cttcagctca ataaaggcga atatcgacat aaattacccc gatggatctt
     3061 ttttgcaaat cagggtgaat tcacgaccgg tgattacgaa gaaatcatga ataaggccag
     3121 cgccctgagt ctggtatcga atgcaatcct gtactggaat acatcaagaa taagcaatat
     3181 tgttgaaggg ttacgtgaaa atggtgaggt tattgatgat gacgtattag cccatatatc
     3241 attactgccc tataaacacg tattacctaa tggtacttat tttgttgatg gagaacctta
     3301 cggtactgag cctaccgaaa gagcaaaacc gtaagtttct gttcaaatgc tcccgctggt
     3361 ccatccggac agattatcga ccatcaggct gtacaggcct gggcggacag cctcagtact
     3421 gacaatccgt taccggtgcc acgctgatgg aacagaagtg gaccagtaag gcgctttctg
     3481 atttggcgcg gttatatgat tttctggtgc tggccagtaa acctgctgcc gccagaatgg
     3541 t
//
LOCUS       DAJVUY010000259         3410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.263, whole genome shotgun sequence.
ACCESSION   DAJVUY010000259 DAJVUY010000000
VERSION     DAJVUY010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.263"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(20..322)
                     /locus_tag="OQQ72_004105"
     CDS             complement(20..322)
                     /locus_tag="OQQ72_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000890114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013637.1"
                     /translation="MLEIVLSPVKAQQFTVTLGAQVCTIRLNQRTTGMYIDIIVNGEP
                     CLYGVLCLNNNRIVRYGYLPFQGDLFFTDTEGNSDPDWRGLGSRYRLYWLLPEELI"
     gene            complement(322..1032)
                     /locus_tag="OQQ72_004106"
     CDS             complement(322..1032)
                     /locus_tag="OQQ72_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000010340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013638.1"
                     /translation="MSFSFDNISLNNFSLSESNVLSAVRGGGVLGLINSVLAPSFGIY
                     YARNDPAGAHQKGGKPFSPDSFVVVEVGAEASVSTVPVEQGAYTTFNKIQRSPELHVT
                     FIVEGWTAFSGSVPNLTNFSTTSRTNVLETLERMRTTAGLYDIETPDKTWTSCDLVKY
                     DYRMRSNNGPTLLTVTAVFQTVMNTGEVSVGSTDKSSPTDNDKAKGAASVKTQPVTAS
                     VTQPSDADRRSATNRGIT"
     gene            complement(1029..3050)
                     /locus_tag="OQQ72_004107"
     CDS             complement(1029..3050)
                     /locus_tag="OQQ72_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS2013639.1"
                     /translation="MAQVLDELVLSLGIDDRDFTAGEQAVHAALNRLTTVMEGVADTF
                     SQGQKKTSESLEKTGKDADKTARRMEDAGKRASRFFSGIRSEILALAGVSLTLGGLKN
                     LVTGFARDLNRLSVESDAFGMKARNLDGWLRAARANNVDEGEMSGAFSRLANAKAAFR
                     AGRSFDPVLQDLFQVAARAGISVDLNTDSTEAIMRKLAVIFPRLTKSEQTAYGNALGF
                     SYAGQQFLGSGHALKDVDEFTSRSQVTPGRTALARKLRKELVELDQTWSGIGMTISTA
                     LMPYALKLSHWLETLGDWMQQHPEEVNRFITTFLNDVESVASLANKAAGELGGWQNVI
                     ITLIGLKVASWVRGLTKALSGPGGLLFAITALYPVVDGLLTSIVGRENKDWLDSHGFF
                     WASDGTFFFNKKEMETYQTKLDVGEKPGNITRAQSPTVWQQGMLDTQASQATGREAAF
                     GESWLQGMRATQEKLGNAMQNRQRPTKTGEALLGWLQPKLSQLEEKYNLPPGLLRSVA
                     ITESRGNQFAVSPAGAMGLFQFMPKTASEFGLRGNDAFDPEKAADAAARKLGGLIRFF
                     HGDLAKALAAYNWGEGNVQRKGLAAAPEETRNYIPRVLANLPYPGAAMAIRSLHPAPV
                     SQSTVTETTHIGTLNVTTTSDNVKGITDDARRRITNSALVSVYSSGVTG"
     gene            complement(3034..3216)
                     /locus_tag="OQQ72_004108"
     CDS             complement(3034..3216)
                     /locus_tag="OQQ72_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS2013640.1"
                     /translation="MVDYVNVPRTIATVISSGKASKAELDSVLGVQDLWDLLEIIHVD
                     AHNEQVIQENRNGAGT"
BASE COUNT          798 a          993 c          814 g          805 t
ORIGIN      
        1 attttacgtt gtctgtagct catatcagtt cctcaggtaa cagccagtag agccggtacc
       61 gggatccgag cccccgccag tcagggtcac tattcccctc cgtgtcggta aaaaacaggt
      121 ccccctgaaa cggcaggtat ccgtaccgga caatccggtt attattcaga cacagcacgc
      181 catacaggca cggttcacca ttaacaatga tatcgatata catccccgta gtacgctgat
      241 tcaggcgaat ggtgcagacc tgagcgccca gtgtcaccgt aaactgctgg gctttaacgg
      301 gagataaaac aatttccagc atcaggtgat ccccctgttc gtggcacttc gtctgtcagc
      361 gtctgacggt tgtgtcaccg acgccgtaac tggctgcgtt ttaaccgatg cggccccttt
      421 tgctttatcg ttgtccgtgg gagacgactt atccgtactt cccactgaca cctctcctgt
      481 attcattacg gtctgaaata ccgcagtaac cgtcagtaag gtcggaccat tattacttcg
      541 cattcggtag tcatatttca caaggtcgca ggatgtccat gtcttgtccg gcgtctcaat
      601 atcgtagagt cctgccgtgg tacgcatcct ttcaagcgtt tccagcacat tcgtccgcga
      661 ggtggtggaa aaatttgtca ggttcgggac ggatccggaa aaggccgtcc acccctctac
      721 aatgaaagtc acatgcagtt ccggcgatct ctggatttta ttaaaggtgg tataagcccc
      781 ctgctccacg gggacggtgg aaacagaagc ctccgcgccc acctcaacga caacaaaaga
      841 atccggggag aaaggtttgc cacccttctg atgggcacct gccggatcat tccgtgcgta
      901 ataaataccg aatgacggtg ccagtacact attaatgagt cccaggacac cgccgccacg
      961 aactgcactc agtacgttac tttcactgag cgaaaagtta ttcagggaaa tattatcgaa
     1021 agaaaaactc atcctgttac cccgctggaa taaaccgaca caagcgccga attcgtgata
     1081 cgccgacgtg cgtcatcggt aatacccttc acattgtccg acgttgtggt gacattcagt
     1141 gtcccgatat gcgtggtttc cgttacggtg gactgcgata caggcgcagg atggagcgac
     1201 cgtatggcca ttgccgcacc cggataaggc aggttcgcca gcacccgcgg aatatagttg
     1261 cgggtctcct ccggagcagc agccagtccc ttacgctgaa catttccctc tccccagtta
     1321 tatgccgcca gagccttagc cagatcgcca tgaaaaaaac gtatcaggcc accaagtttt
     1381 ctcgcggcgg catcagcggc tttttcggga tcaaaggcat cgttccccct cagaccaaat
     1441 tcactggccg tcttcggcat gaactgaaac agtcccatcg caccagcagg tgagacggca
     1501 aactgattac cacgggattc ggtgatcgca acgctgcgca gcagtccggg cggcaggtta
     1561 tatttttcct ccagttgaga cagtttcggt tgcagccagc ctaacagggc ttccccggtc
     1621 ttcgtcggtc gctggcggtt ttgcatggca ttaccgagtt tttcctgcgt cgcacgcata
     1681 ccctgtagcc aggattcacc gaaggctgct tccctcccgg ttgcctgaga agcctgagta
     1741 tccagcatgc cctgctgcca tactgtgggt gattgtgccc gggtgatgtt gccaggcttt
     1801 tctccgacat ccagttttgt ctgatacgtc tccatctctt tcttattgaa aaagaaagtc
     1861 ccgtctgaag cccagaaaaa accatgtgaa tccagccagt ccttattttc cctgccaaca
     1921 atggatgtca gtaatccgtc aacaaccggg taaagcgccg ttatcgcaaa aagaaggcct
     1981 ccggggccac tgagggcttt tgtcagcccc cgcacccatg acgccacttt cagcccgatc
     2041 agcgtaataa tgacattctg ccagcccccc agttctccgg cagccttatt cgccagggag
     2101 gccactgact caacgtcatt cagaaatgtg gtgataaacc tgttcacttc ctccggatgt
     2161 tgctgcatcc agtcaccgag tgtctccagc cagtggctga gcttcagcgc gtacggcatc
     2221 aacgcggtgc taatcgtcat cccgatgccg gaccaggtct gatcgagctc aacaagctct
     2281 tttcgtagct tacgggccag cgctgtacgc cccggcgtaa cctgcgaacg ggaagtaaat
     2341 tcgtccacat ctttcagcgc atgaccggag ccaagaaact gctgtccggc ataactgaag
     2401 cccagcgcgt tgccgtaggc agtttgttcg gactttgtca gtcgcggaaa aataaccgcc
     2461 agcttgcgca tgatggcttc agtgctgtca gtatttaaat caacactaat gcccgccctg
     2521 gctgcaacct gaaacaaatc ctgtaacaca ggatcaaagg accttccggc tctgaaggcc
     2581 gcttttgcat ttgcaagccg ggaaaatgcc ccagacattt ccccttcatc aacattattt
     2641 gcccgcgcag cccgtaacca tccgtccaga tttctggcct tcatgccaaa agcatcggat
     2701 tccacggaca gacggttcag atcacgggca aaacctgtta ccaggttctt cagccccccc
     2761 agcgtcagac tgacacccgc aagagccaga atctcgctac ggatccctga aaaaaaacgg
     2821 gacgcccgtt tcccggcatc ttccattcga cgggccgttt tatcagcatc ttttccggtt
     2881 ttttccagtg attcactggt tttcttctgt ccctgactga atgtgtcagc gacaccttcc
     2941 atcaccgtcg tgagccggtt aagggcagca tgtactgcct gttccccggc agtaaagtcc
     3001 ctgtcatcaa tcccgaggga cagaacaagc tcatcaagta cctgcgccat ttctgttctc
     3061 ctgtatcacc tgttcgttat gggcatccac atgaattatt tccagcagat cccataagtc
     3121 ctgcacacca aggacagaat ccagttcagc ttttgaagcc ttaccggagg agataacggt
     3181 cgcaatggta cggggaacat taacgtaatc caccaccccg aacggtctgt cggggtcgag
     3241 ataacgcggg gggatatcta gctgacgacg gtagcgaaaa aatccacatg cagcttaaag
     3301 acctccgcac gcagattaag acgggtaatg atttcttcaa tatcctcttc aacaagcggt
     3361 ctccggatgc tgcgtttttt cggatcggga acaaactgca cacagtccat
//
LOCUS       DAJVUY010000260         3380 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.264, whole genome shotgun sequence.
ACCESSION   DAJVUY010000260 DAJVUY010000000
VERSION     DAJVUY010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.264"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(54..2706)
                     /locus_tag="OQQ72_004109"
                     /pseudo
     CDS             complement(54..2706)
                     /locus_tag="OQQ72_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT          842 a          792 c          782 g          964 t
ORIGIN      
        1 gctgcttaaa aaagaacaaa tggtagtgtc cgctattgcc agtacacctc attcacatag
       61 acattcagct ggctgttgcc tgcggtgatg tcatacccca gtatcatgct ggcacgcccc
      121 agcagcgatt cgtagtgatt cagatgtata ttgaggccat tactcgcctt catagccatc
      181 tcattctggt ggctgtatgt aagctgggtt tgcggctcta tatagaaccc ataaccagta
      241 ggggacaggt tgaacctctg cccggcttct agggagatgc tcattccatt cgcagtgccg
      301 ttggcgttaa cgccgttgtt atgactgtcc agtacgtgga aactattttt ctggcgcgat
      361 gcttttataa cgagatcgct gtaaaaaccg ttttgtgcca tgtaactggc gtacattccc
      421 atgtagtctg aacgtgcggt accgtcgcct ccgctatagt ccggcgatgc atgtgttgag
      481 ccaatataca gaccgacata caacggcatt tcatcagaga gacgtttatc cccaccaaac
      541 tggataccgc tgtaacccat gtcaaagccg ctcagtttgc cactggcaaa ggagtccagg
      601 cttcccccat aactgcgcaa ccagatatta ccgtctttac tctgatttcg caggtcaccc
      661 atccgttgca tcagcgtacg gttttcaaca tagttcaata agtaaccgac attgagataa
      721 ttgccgccag catctgcggt cgtggtgggt ttaggcgtgg gagcgggttc aggcgtagga
      781 tcggggttga ctatgggagg ctgagcggga gctggtgtgg gttcaggatt aggagtcggt
      841 tccggaactg tcccggaagc gtaaagctcc cagttagtgc catttttacg cacatcgtac
      901 agatatcccc cccaactcaa cctgagaaga cgcgctgaac gaggccgcgc cgtcagtggt
      961 ttttaccact gtcagaactt catttcccgt tgtggcctcg ctgccctggt tgcggatagc
     1021 caatacgtga ttaccagcac tactcccgct gatattcaat aaatcccctt tattattaac
     1081 gccattaccc tcgccaacaa catcagcacg cataataaag gtactgttac cgctcaggtt
     1141 ctctacgttt aatgtggcaa atgtgccggc agttgacccg tggctggcaa aatcgacagt
     1201 tgaatggctc agcgccagcg tgtcgagatt agaattactt gttacgttcc agacgctgtt
     1261 attcattgca acgtccagtt ttccgccatt gacattatcg ctgagggagg aacctgtcca
     1321 aaccgaccca gggtgcatat ccagattgat tagcccacct ttggaaaaaa cgctaccgtt
     1381 gataagcata cgacccgagg cgttgatgcg gctggcggca taaccatcgt catgttgcgt
     1441 tgcaatggcc atctggtcgg gtgtactcat atcaatgacc agatcgctcg tgaggtcgat
     1501 ctggctgttg gtcatggcat aaattcccct ggctcctgcc gcgccggtga tagccaaact
     1561 gtctccggtt attctaccgc cgctgagcgc ccacaaaccc agcgccagac tgccattacg
     1621 atcaactgta atatcggtat tttgcatgtt gacaacagcc gttgccgtct gggccgaggc
     1681 accataagaa ccgccggaaa agatgctgtt tcgttgcgct gccgtgccag aaaaattgat
     1741 tgtcgcgtct gaaccactgg tgacgaggcc accgccctgc gcggaagaaa tatggctatc
     1801 tgcaccgata gtggttgtac caccacgaac ttcgacgcca ttggccgcgg ctccagttac
     1861 atcaacagtg agtgcattcg cgctaacctg gccaaagctc cagaggccgt gtgcattatc
     1921 gccattggtt ttaatggaac tgtttgttcc gagatcgaca acagagtttt tctgtacgtt
     1981 tatccccatg gcgctgtagc cctgaacatc gattgtcagg tctgtagccg taaaacgcgc
     2041 agcaccattg gcgttattgc cgttgagacc accgatataa acacctgtac ttccatcggt
     2101 cgtgatttta cttccgcttc caagatcgac actggtgcca tagtcattga tggttaggcc
     2161 tataccgttc gagttttcaa tggtgaattg agtggctgtt agtgttgagc tatgcccaat
     2221 aatgatgccg tcatcgttac tcttaatggt gctgcctgtg cctaagtcag catgggtata
     2281 gtcaccaatt aagttaatgc cgatggcaga ggtttgacca acaacatcta ctgtgagtcg
     2341 gttagctgtc agggagctgt ttttgccctg aataatgatt ccttttgcat atccagaggc
     2401 gtcgttgaca ttgacggtga catcattacc caggttgata ttgccaggcg tgtttcctgc
     2461 tggggtcatt acaccataga ggtttcctga tggatcggcg gtatctcctg taattctgtc
     2521 accatcatta atagtaatat tggtgccata ttgacttcct gtatcagcag ctatcagcag
     2581 gggggaaaag ataattgcat tcaaaccaat agcgccaaat tttatcagtt gaattgaggg
     2641 cgaacggatt tttaattcag cgagacgatc tgctttggta ttcccattgt gttgtttgat
     2701 gcccatacca ctcctatata gtacccagac tatgggtcta tggattttgt cattttgttt
     2761 aaatcaatga ataatatcct cttatcatca tgatatttgt atggtgcaat catgatgagc
     2821 ttctcagaga ataattctct attaccgggc aaaatcagga acacaggaat taatatatat
     2881 ttaacatccc ccttacaaag gtgagtttat atcgagttat tccctaagtt gtcgttactt
     2941 attccaattc gttactataa atatggcaaa aatattacaa caaacagcgg ttaaaaaatt
     3001 tggtgaagat tttttgtaat aatcctaatt agttatggga atttcgcttg atgtatctgc
     3061 ataacaaaaa caatatgcgc catttttgca ttactaataa gaaaaagcaa aaaacatcga
     3121 tattcatttt tggtcaatgg gttttctggc ctatcgttgt tattgtgcta ctggttatca
     3181 ttttcatctt gccagcatat tggagcgtga tcaattttga tcagctgtga aggtggctga
     3241 tgtgtagtga tacaaaaact tacgttatat cactgctaat gagatatccg tcatctgaac
     3301 acttatgtct ttaattattc tcgtggttca ctataggcaa taagcacaaa agtgtaggat
     3361 gttacaagaa tgattaggac
//
LOCUS       DAJVUY010000261         3316 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.266, whole genome shotgun sequence.
ACCESSION   DAJVUY010000261 DAJVUY010000000
VERSION     DAJVUY010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.266"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(117..743)
                     /gene="dsbA"
                     /locus_tag="OQQ72_004110"
     CDS             complement(117..743)
                     /gene="dsbA"
                     /locus_tag="OQQ72_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HCS2013641.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(760..1746)
                     /gene="srkA"
                     /locus_tag="OQQ72_004111"
     CDS             complement(760..1746)
                     /gene="srkA"
                     /locus_tag="OQQ72_004111"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HCS2013642.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(1823..2092)
                     /locus_tag="OQQ72_004112"
     CDS             complement(1823..2092)
                     /locus_tag="OQQ72_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HCS2013643.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            2162..2746
                     /gene="mobA"
                     /locus_tag="OQQ72_004113"
     CDS             2162..2746
                     /gene="mobA"
                     /locus_tag="OQQ72_004113"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HCS2013644.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            2728..3255
                     /gene="mobB"
                     /locus_tag="OQQ72_004114"
     CDS             2728..3255
                     /gene="mobB"
                     /locus_tag="OQQ72_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HCS2013645.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGARHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT          880 a          799 c          785 g          852 t
ORIGIN      
        1 ccacttatgc tgaaataatg tccagcggca ggatgtatta tcagaatgta tttatattta
       61 ttaaataata aaaaaagccc gtgaatattc acgggcttta tgtaatttac attgaattat
      121 tttttctcgg acagatattt cactgtatca gcatactgct gaacaaaaac atccatattg
      181 ctggtatcca taccctgcgg attcagctga tatttaccgt taacaaacat cgccggaaca
      241 ccgcgcaatt gcacgtcagc tgcagctttt tcctgctgag ctaccagaga tttcaccacg
      301 aagctgttcc acgccgcgtc gtactcttca cctttaatac ctgcgttgat aaatacatcg
      361 cggatatcag aagcagaacg aatggtctgg gttttctgta cgccttcaaa cagcggaaca
      421 gtcactttgt cttccacgcc cagcgccatc gccacagccc atgcctgagt cagatctttg
      481 cccaggtcac cacccatgaa gttgacgtgg tatttagtca tcttcacgcc ttccggcagt
      541 tttttcttca cattatcaga aatatgcaga acttcttcaa actgatagca gtgcggacag
      601 aagaaagaga aaaactccag cacttgcggc gcgccagcta ccggtttttc cagggtagtg
      661 tactgtttac catcttcata ctgcgccgcc gatgcgctaa acgctaaaac taaaccagcc
      721 agcgccagcc aaatcttttt catgatctac tctctccgat taatacatag gtgttaattg
      781 taaagggggt tcttgtagaa cttttgcctg ttctataaaa gtcgccgttt gtcgcagcca
      841 gtaatcttcc ccggttaacc acgggaaatt tttcgggaac gcgggatcag cccaacgccg
      901 cattagccag gcaagataat aaaccaaacg catggcgcgt aaaggttcaa tcagtccgat
      961 ttcagcggtg tcgaactcgc taaattcttc ataagcttca ataatagttt ccagttgcat
     1021 ccgctgctcg gctttatcgc cattgagcaa catccacaaa tcctgaatag ctggaccatt
     1081 acgtgcatca tccagatcaa caaacattgg accatcgcgc cagagaatat tcccggcgtg
     1141 gcagtctcca tgtaagcgca gaacggtgga atcttcccgc cagtgcgctg taacggcggc
     1201 gatcagctca tctgtcgctt tcaggaatgc cgctttcaac ccggaaggta tcagtgtagc
     1261 gtcctcaaac agcttgcgtg gctcaatgag atattcattc agaccgatgg tcgggcgatg
     1321 gataaaaagc tgtttgcgcc ccgtctggtg catacgccct aaataacgcc caaccgcttc
     1381 catctgatcg atattatcag cttcgaactg gcgaccaccg acgcttggaa aaacagcgaa
     1441 ataaaatccc tgatgattca ataaagtctg accgttaaag gccacaggtg ctgcgaccgg
     1501 aacttcatca tttaccaact gcaacgcaaa ttgatgttct tcgaggattt gatcggctgt
     1561 ccaacgttca gggcgataaa atttgacgac aatacgtcga cgatcttcgt cctgaaattg
     1621 atagacacgg ttttcatagc tgttaagcgg ggtaagaccg gaatccaccc ggatcccttg
     1681 ctcaaataga gcatccatga tggtatccgg gtgtagtgtc tggaaagtaa aagcgctgtt
     1741 gttcatccca tcatccggaa aacattacga atgatgaagg atatcatttc acgatgattt
     1801 tggtggcgcc gcttacaagc ttttactctt taattacgcc gcgagcgcgt aacagcgccg
     1861 ttttgaagtc ttcttcataa tctttctgca aacccgggat caccgcatct ttcgcggaat
     1921 cacgcatttt caggtgatag atcagaatgt catccgtcaa atccgccagt tcgccgtcaa
     1981 aacctgactc tttcgccagt ttctgcaaaa attgcaacag gttaaggtct ggctcttttt
     2041 gccaggctgg ctggaggaat tcaataactt cattcagacg tttacatttc atagtgatgc
     2101 tccttactct tgagacagac acgttagcag ggtcaatccc acaataaaag aggcgatatc
     2161 ggtgaatctg atgacgacga taacaggcgt tgtgctggca ggcggtaaag ccagacgaat
     2221 gggtggcgta gataaaggat tgcttgaatt aaacggcaaa ccattatggc aacatgtcgc
     2281 tgacgcgctt atgacgcagc tctctcacgt cgtggttaat gccaatcgtc atcaggaaat
     2341 ctatcaggca agcggtctga aagtgattga agattcactg gcggattacc caggccctct
     2401 ggcaggaatg ctttcagtaa tgcagcagga agctggtgag tggtttttgt tttgcccgtg
     2461 cgatacgcct tacattcccc ctgatttagc agcccggctt aatcatcagc gcaaagatgc
     2521 gcctgtcgtg tgggtccatg acggtgaacg cgatcacccg actattgctc tggtaaaccg
     2581 cgctattgag cctttattac tggaatatct gcaagcagga gaacgccggg taatggcatt
     2641 tatgcgtctg gctggcggtc atgcggttga tttcagcgat cataaagatg catttgttaa
     2701 cgtgaatacg ccagaggagc ttgcccgatg gcaggaaaaa cgatgatacc gttactcgcc
     2761 tttgccgcgt ggagtggtac cggaaaaact acgcttttga aaaaactgat cccggcatta
     2821 tgcgccagag ggatccgtcc agggctgatt aagcatacgc accatgatat ggatgttgat
     2881 aagccaggca aagatagcta tgagctgcgc aaggctggcg cggcacaaac catcgttgcc
     2941 agccagcaac gatgggcctt gatgacggaa acaccagacg aagaagagct ggatctacag
     3001 tttctcgcaa gtcgaatgga tacctcaaag ctggatttga ttctggtcga agggtttaag
     3061 catgaagaga tcgcaaagat tgtgctgttt cgcgatggag ccagacatcg acctgaagaa
     3121 ttagtgatag acaggcatgt tattgctgta gccagtgatg tgccgcttaa tcttgatgtc
     3181 gcattactgg atattaatga tgttgagggg ctggctgatt ttgtggtgga gtggatgcaa
     3241 aagcagaacg gataagcaag agtaggctgg atcagacgca gccagtgtcg catccgacct
     3301 ttttctgcac caacgc
//
LOCUS       DAJVUY010000262         3296 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.267, whole genome shotgun sequence.
ACCESSION   DAJVUY010000262 DAJVUY010000000
VERSION     DAJVUY010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.267"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1759
                     /locus_tag="OQQ72_004115"
     CDS             <1..1759
                     /locus_tag="OQQ72_004115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS2013646.1"
                     /translation="ARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRL
                     TWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPL
                     NVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSV
                     ALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVL
                     LAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRS
                     MMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLT
                     SSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLA
                     SAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPT
                     GRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADP
                     IHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINVDDFDPE
                     ELATKPVKLPEKVRKVEAA"
     gene            complement(1802..2248)
                     /gene="ivy"
                     /locus_tag="OQQ72_004116"
     CDS             complement(1802..2248)
                     /gene="ivy"
                     /locus_tag="OQQ72_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ivy family C-type lysozyme inhibitor"
                     /protein_id="HCS2013647.1"
                     /translation="MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQG
                     HKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFS
                     TIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            2429..3199
                     /gene="yafV"
                     /locus_tag="OQQ72_004117"
     CDS             2429..3199
                     /gene="yafV"
                     /locus_tag="OQQ72_004117"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HCS2013648.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVYYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT          735 a          838 c          948 g          775 t
ORIGIN      
        1 ggcgcgtggt caggagatcc cttgctttgc actgacaagc ccggaagcgg gttccgatgc
       61 gggcgcgatt ccggacaccg ggattgtctg catgggcgaa tggcagggcc agcaggtgct
      121 ggggatgcgt ctgacttgga acaaacgcta tattacgctg gcaccgattg cgactgtgct
      181 tgggctggcg tttaaactct ccgacccgga aaagctgctg ggtggcgcag aagatttagg
      241 tattacctgt gcgctgatcc cgaccaccac gccgggcgtg gaaattggtc gtcgccactt
      301 cccgctgaac gtaccgttcc agaacggacc gacgcgcggt aaagatgtct tcgtaccgat
      361 cgattacatc atcggtgggc cgaaaatggc cgggcaaggc tggcggatgc tggtggagtg
      421 cctctcggta ggccgcggca tcaccctgcc ttccaactca accggcggcg tgaaatcggt
      481 agcgctggca acgggcgcgt atgctcacat tcgccgtcag ttcaaaatct ctatcggaaa
      541 gatggaaggg attgaagagc cgctggcgcg tattgccggt aatgcctacg tgatggatgc
      601 tgcggcatcg ctgattacct acggcattat gctcggcgaa aaacctgccg tgctgttggc
      661 tatcgttaag tatcactgta cccaccgcgg gcagcagtcg attattgatg cgatggatat
      721 cactggtggc aaaggcatta tgctcgggca aagcaacttc ctggcgcgtg cttaccaggg
      781 cgcaccgatt gccatcaccg ttgaaggggc taacattctg acccgcagca tgatgatctt
      841 cggacaagga gcgattcgtt gccatccgta cgtgctggaa gagatggaag cggcgaagaa
      901 caatgacgtc aacgcgttcg ataaactgtt gttcaaacat atcggtcacg tcggtagcaa
      961 caaagttcgc agcttctggc tgggcctgac gcgcggttta accagcagca cgccaaccgg
     1021 cgatgccact aaacgctact atcagcacct gaaccgcctg agcgccaacc tcgccctgct
     1081 ttctgatgtc tcgatggcag tgctgggcgg cagcctgaaa cgtcgcgagc gcatctcggc
     1141 ccgtctgggg gatattttaa gccagctcta cctcgcctct gccgtgctga agcgttatga
     1201 cgacgaaggc cgtaatgaag ccgacctgcc gctggtgcac tggggcgtac aagatgcgct
     1261 gtatcaggct gaacaggcga tggatgattt actgcaaaac ttcccgaacc gcgtggttgc
     1321 cgggctgctg aatgtggtga tcttcccgac cggacgtcat tatctggcac cttctgacaa
     1381 gctggatcat aaagtggcga agattttaca agtgccgaac gccacccgtt cccgcattgg
     1441 tcgcggtcag tacctgacgc cgagcgagca taatccggtt ggcttgctgg aagaggcgct
     1501 ggtggatgtg attgccgccg acccaattca tcagcggatc tgtaaagagc tgggtaaaaa
     1561 cctgccgttt acccgtctgg atgaactggc gcacaacgcg ctggcgaagg ggctgattga
     1621 taaagatgaa gccgctattc tggtgaaagc tgaagaaagc cgtctgcgca gtattaacgt
     1681 tgatgacttt gatccggaag agctggcgac gaagccggta aagttgccgg agaaagtgcg
     1741 gaaagttgaa gccgcgtaat tgaataacgg agccgaaagg ctccgtttct ttatccgcta
     1801 attatttaaa attaaagcca tccggatggt tttccaggct gccggtcaac gccgcgaaca
     1861 gcaccgtttt accatcaatc gaaagcgcat cgttcacatt cagccaggtg agtttctctt
     1921 gcgacgtttt ctcatcaata gtcgagaaca gccccgtcat ctgattagat ttctcggacc
     1981 acatcacagc gatacgttgc gagccacagt catgcggttt gcacgcgctc atcacctgat
     2041 acgtctcatc tcccaacgtt acggtttgtg cgggagtata agtaccgcct ttcatcaccc
     2101 aggcaggcag cttatgccct tgtaccatct gattaaatgc agctttggtg gtttcgccct
     2161 ttgcaaggct gctaatggtt aaatcatcct gcgccattgc actggtggcg atgaccagag
     2221 cggcgactgt cgttattgcc ttaaacatca ttcctcccga gcttatcctg cccatgttat
     2281 taaccttcta aagcctggcg ataacacgat aatttgcaaa tcagatattt ccaatatcag
     2341 catttgttat caatttattc tgcgctaagg caactgcctg ataaggtgtt aaagttataa
     2401 aacccttcgc ataaaggagt tgtacaccgt gcctggtttg aagattacgc ttttgcagca
     2461 accactggtg tggatggatg gccctgccaa cctgcgtcat tttgatcgtc aactggaagg
     2521 tattaccggg cgcgatgtga tcgttctacc ggagatgttt accagcggct ttgccatgga
     2581 agcggcagct tcgtcgctag cacaagatga cgtagtgaac tggatgacag ctaaggcgca
     2641 gcagtgcaat gcgctgatag caggcagtgt tgcattacaa acggagtctg gttcggttaa
     2701 ccgctttttg ctggttgagc cgggcggcac ggtacatttt tatgataagc gtcatctgtt
     2761 ccgcatggca gatgagcatc tacattataa agcgggcaat gcgcgagtga ttgtggaatg
     2821 gcgcggctgg cgtattttgc cgttggtgta ctacgactta cgttttccgg tgtggtcgcg
     2881 caatctcaac gattatgacc tcgccatcta cgttgccaac tggcctgctc cgcgctctct
     2941 gcactggcag gcattgctga cggcccgcgc gattgagaat caggcgtatg tggcgggatg
     3001 caatcgcgtc ggcagcgatg gcaacggctg ccattatcgc ggtgacagcc gggtgattaa
     3061 tccacaaggc gagattatcg ctactgccga cgcgcatcag gcaacgcgca ttgatgcgga
     3121 gctgtcgatg atggcattgc gggaatatag agaaaagttt ccggcatggc aggatgcgga
     3181 tgagtttagg ttgcggtgag tgggggttgt gtttaaggct gggggagagt cggggtaaga
     3241 ctacgaaagc ccgctctccg caaggactga cgccagatag tttctgtcca tagctg
//
LOCUS       DAJVUY010000263         3278 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.268, whole genome shotgun sequence.
ACCESSION   DAJVUY010000263 DAJVUY010000000
VERSION     DAJVUY010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.268"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(293..988)
                     /locus_tag="OQQ72_004118"
     CDS             complement(293..988)
                     /locus_tag="OQQ72_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HCS2013649.1"
                     /translation="MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ
                     QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER
                     LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP
                     ESSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH
                     GPVKAVYLIIEDC"
     gene            complement(981..2408)
                     /locus_tag="OQQ72_004119"
     CDS             complement(981..2408)
                     /locus_tag="OQQ72_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HCS2013650.1"
                     /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE
                     LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVWFAKNKEDATRYILQVAQ
                     RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK
                     DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL
                     VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG
                     PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG
                     SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK
                     GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR
                     DLPEADGESFRSWFKKHQAQEKKNG"
     gene            complement(2419..3138)
                     /locus_tag="OQQ72_004120"
     CDS             complement(2419..3138)
                     /locus_tag="OQQ72_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HCS2013651.1"
                     /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ
                     PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAE
                     KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL
                     ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVGHLMEVRPEYLIGADVSCLLNISG
                     RLQREGQKVKVMHIAEVLMSR"
BASE COUNT          811 a          922 c          702 g          843 t
ORIGIN      
        1 gccttgtcaa aaaaatggta gatgaatacc aacaaaactc tgggcagtaa taaacaacat
       61 tctgatagag agtgcctgta taaagctgaa gtgacaatga ccgggaaggg aacccgtttt
      121 caggaatgga tgcctgtctt tttcactgta aatatcctgg cattactaat gccaggatat
      181 ttacagaaga gcagcataac catgacggaa cggggttaag tcaggttgtc cttaacgcta
      241 ttttcaacct cgtatgcctt cttcaggttt atgttcagat ctcatatctc tctcagcaat
      301 cctcaataat cagatacacc gctttcaccg ggccatgaac cccgacgact ttgataagct
      361 caatatccgc cgttgaacta gggccgctaa tgatgttaat gcaggacggc attcgttcac
      421 cggcctgcgc tttctgatgc aatttttctg cgagttgcgc tacacgcggc aggattgtgc
      481 ttttacgcag gataaaaaga gaagattccg ggagcaggct caatgaacgc ccgcgctcgg
      541 cggcggaaaa aagaaccacg cctcccgatt cggttaaacc atattcagca tacacaacac
      601 ccactttagc ctgctctgcc tgcgagatat tctcggcacc tttcgccgga tcccaaacaa
      661 cggcattgca ttcctgctgc aaacgttcac taatccccaa ttcctccagc ctcgtgtcac
      721 cgctaatcac gaccgactga tctcccagct ctttacacag acgtattgca gcttctgccg
      781 ccttcgcctc gctggtcagc tcacagcgcg tcaacataac atcgctggca aactgaataa
      841 acgcgtcaca gcgctgctgt tggttaagtt gggtaagccg ctcgttagca tagttgttaa
      901 gcggcgcatc ttctgcttgc ggttcaagtc gcagcgggcg acccagtgcc tgagcaacgt
      961 tattcaaaaa ttcgcctcga ttatccattc tttttctcct gcgcctgatg tttcttaaac
     1021 caactacgga aactctctcc gtcagcttca ggaagatcgc gtgcttccat ccagtcgcta
     1081 atcgcgccaa atttgagtgg tgttttgccg ccattgataa accagcttgc cgcatgagcg
     1141 ccggccatca tcccgacttt ccacaatcct ggatgactat tggcataagc gaacattttt
     1201 atcgcccgtt gctctgcttt tgcggtgatc cctttttcag ccatcacccg acgatgacgc
     1261 aaaatcagtt ttgacagcgg aatacgcacc ggacacacgc tgtcacaagc agtgcataaa
     1321 gagcaggcgt agggtaaatc tttaaaatct ttatagccgc caagtagcgg agaaatcacc
     1381 gcaccaattg gccctggata aatagagcca tatccatgac cgccaatatg gcgatatgcc
     1441 ggacaagtat tcatacaagc cccgcagcga atacagcgca gcacatcccg aaattcagag
     1501 gccagcacct cagaacgccc gttatcgaca ataaccagat gaaactcttc aggaccatca
     1561 acgtgccccg cttcgcgcgg tcctgtcagc caggtgttgt atcccgtcaa acgtgcacca
     1621 acggcactgc gcgccagcat ggtgatcaat acatctacct cggcaaacgt gggggcaata
     1681 cgctccattc ccatcactgc aatatgcgtt ttaggcagcg tggtacacat tcgcgcatta
     1741 ccttcattgg tcaccaggca taccgaacct gtctctgcca ccgcgaaatt acagccggta
     1801 atacctattt cagcactgag gaaatcttcg cggatttttt gccggatgaa taaggtcatc
     1861 gcttcaggcg tttccggccc ctcatagccc agacgttcgt gtagcactcg acggatctga
     1921 tggcgatctt tatgaattgc cgggaccaca acatgagatg gcggatcttg atccagctgg
     1981 agaatatatt cacccagatc ggtttcaatc acctgaatgc cagcatcctg caacacatga
     2041 ttgacaccaa tctcttcggt caccatcgat ttagatttca ccaccttccg ggcatttttg
     2101 cgttgggcaa cctgtaaaat gtagcgggta gcgtcttctt tgttttttgc aaaccagacg
     2161 tgaccgccgt tttgcgtcac tttttctgag agctggtaca gataagcgtc gagattactc
     2221 agaacatgat cacgtatctg ggcggcccga tcgcgccact cctcccagtg ccccaattca
     2281 tcgaccattt tttgccgatt tgccccaata cgctgctgcg cgtttgccac cgctttgcgc
     2341 atgatcggat cttcaatttg ctgacggatg cgagtcttaa aatctgtatt actggttttg
     2401 atcgacatct ttatatcctc agcggctcat caacacttca gcaatatgca tcactttgac
     2461 tttctgccct tcccgttgta atcgcccact gatgttcagc aggcaactca cgtcagcacc
     2521 aattaaatac tcagggcgga cttccatcag gtgcccaacc ttttctttca ccatctcgcc
     2581 ggatatttcg gccattttga ccgagaacgt gccgccaaat ccgcagcagg tatcctgttc
     2641 agcaaaggtc aacagctcca gtccacgcac atttttcagc agcgtaagtg gctcgtcctt
     2701 cactcccagc ttacgggcca ggctacaaga tgggtgatac acagctctcc cttgcaaact
     2761 ggcacctaca tcgactaccc ctaatttatt aacaataaaa gaggtgagat cctgcatacg
     2821 cgcggcaacc ttttcggcac gtgatgccca ttcaggttca tccgccagat acgtcgggta
     2881 actttttacg gcataggtgc aagagccagc cggtgaaata atgggatcgt cgttatcctc
     2941 cagtgcggcg atcagatttt tcatccctgg aatcgcttct ttgatataac cgctattgat
     3001 cgcaggctga ccgcagcatc cctgtttctc cgggaaattt acgcgacagc cgagtttttc
     3061 cagtagcagc acggagtctc gtgccattct tgatttcagg gcgtcaccaa tacaggtgac
     3121 aaagaaattg acattcacaa ctaatactcc attacttcat gcccatttat gcccgatgtt
     3181 tcccccccac cgggggatca atcatcaata aatatggcgt tcttttttaa ttggctagca
     3241 acatactacc cctcatttgt atgacaaatg ataatctt
//
LOCUS       DAJVUY010000264         3223 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.270, whole genome shotgun sequence.
ACCESSION   DAJVUY010000264 DAJVUY010000000
VERSION     DAJVUY010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.270"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..907
                     /locus_tag="OQQ72_004121"
     CDS             <1..907
                     /locus_tag="OQQ72_004121"
                     /EC_number="2.7.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pseudouridine kinase"
                     /protein_id="HCS2013652.1"
                     /translation="ANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNK
                     AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM
                     NISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVPVFVDPVSAWKCV
                     KVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVY
                     YSDISGENSWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGCSSMALS
                     CEYTNNPDLSIANVISLVENAERLN"
     gene            874..1833
                     /gene="psuG"
                     /locus_tag="OQQ72_004122"
     CDS             874..1833
                     /gene="psuG"
                     /locus_tag="OQQ72_004122"
                     /EC_number="4.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HCS2013653.1"
                     /translation="MVSGERRTSELKISPELLQISPEVQDALKNKKPVVALESTIISH
                     GMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEFELLGREGHNVTKVS
                     RRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL
                     ANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDS
                     ASEIARAMAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKES
                     TLFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1927..3176
                     /locus_tag="OQQ72_004123"
                     /pseudo
     CDS             1927..3176
                     /locus_tag="OQQ72_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
BASE COUNT          770 a          724 c          872 g          857 t
ORIGIN      
        1 ggcgaatatt gatgtcgccg gatattcaca tgaatcatta aattatgcgg attcaaatcc
       61 aggtaaaata aaatttacgc ctggtggagt cgggcgcaat attgcacaaa acctggcgtt
      121 gctggggaac aaagcctggc tactgagcgc cgtaggcagt gacttttatg gtcaatcgct
      181 gctaacgcaa accaatcaat ctggcgttta tgtcgataaa tgcctgattg tgccgggaga
      241 aaatacgtct agttatttat cattactcga taataccggt gaaatgctgg ttgctataaa
      301 tgacatgaat attagcaacg ctattacagc tgaatatctc gcacagcacc gtgaatttat
      361 tcagagggca aaggtcattg tcgcggactg taatatcagt gaagaggcac tggcatggat
      421 tctggataat gccgccaacg tacccgtatt tgtcgatccg gtttccgcat ggaaatgtgt
      481 caaagtgcgc gaccgtctaa atcagatcca cactctgaag ccaaaccgcc ttgaagcgga
      541 aaccctgagt gggattgcgc tgtcagggcg tgaagatgtg gcaaaagttg ctgcctggtt
      601 ccatcaacat ggcctgaacc gactggtatt gagcatgggc ggcgacggcg tttattacag
      661 cgatatcagc ggtgaaaata gctggtctgc gccgatcaaa accaatgtta ttaatgttac
      721 cggagcgggc gatgccatga tggcgggact tgcttcgtgt tgggtagacg gaatgccgtt
      781 tgccgaatct gttcgtttcg cacagggatg ttcgtcaatg gcgctctcct gtgaatacac
      841 caataacccc gatttatcga ttgccaacgt tatatcgtta gtggagaacg cagaacgtct
      901 gaattaaaaa tttcccctga attattacaa atttccccgg aagtgcagga cgctttaaaa
      961 aacaaaaaac cggttgtggc gctggaatcg accattattt ctcacgggat gccgttccca
     1021 caaaatgccc agaccgcaat tgaagtagaa gaaactattc gtaaacaggg cgctgtacct
     1081 gccactatcg ccattattgg cggcgtgatg aaagtgggtt taagcaaaga agaatttgaa
     1141 ttactgggtc gtgaagggca taacgtgacc aaagttagtc gtcgcgattt accttttgtt
     1201 gttgccgccg gaaaaaatgg cgcaaccact gtggcttcaa cgatgattat tgcggcgctt
     1261 gccggaatta aagtatttgc caccggggga attggtggtg tgcatcgcgg ggcggaacat
     1321 accttcgata tttctgccga tttgcaagaa ctggcaaata ctaatgtcac cgttgtttgt
     1381 gccggggcga aatctattct cgatttagga ttaaccactg agtatttaga aaccttcggt
     1441 gtgccgttaa ttggctatca gactaaagcg ctgcctgcgt ttttctgccg taccagctcg
     1501 tttgacgtca gtattcgtct cgacagcgcc agtgaaattg cccgtgcaat ggcggtgaaa
     1561 tggcaaagcg ggctgaacgg tggcctcgtg gtagcgaacc cgatcccgga acagtttgcg
     1621 atgccggagg aatctatcaa tgcagccata gatcaagccg tcgccgaagc cgaagagcag
     1681 ggcgttattg gtaaagaaag tacactgttc ctgctggcgc gcgttgctga gctgaccggc
     1741 ggtgacagcc tgaaatccaa tatccagctg gtattcaaca acgccattct ggcgagtgaa
     1801 attgccaaag aataccagcg tctcgcgggt taatttccga cgggcagaaa gccgtcgccc
     1861 gtactcatca agcataccaa aacctggcgc tgacgccggg tttactggca tgaagggaaa
     1921 atcattatgg atataatgag aagtgttgtg gggatggtgg tgttactggc aatagcattt
     1981 ctgttgtcag tgaataaaaa gagcatcagt ttgcgcacgg ttggagccgc actgctgctg
     2041 caaatcgcta ttggtggcat catgctctac ttcccaccgg gaaagtgggc agtagaacag
     2101 gcggcattag gcgttcataa agtgatgtct tacagtgatg ccggtaggcc ttcatttttg
     2161 gttcgctggt tgggccgaaa atggatgtcc tgtttgacgg tgcgggtttt atcttcgcct
     2221 ttcgcgtact tccggcgatt attttcgtta ctgcgctcat cagtctgctg tactacattg
     2281 gcgtgatggg gctgctgatt cgcatccttg gcagcatttt ccagaaagct cttaacatca
     2341 gcaaaatcga atcttttgtc gcagtcacaa ctattttcct cgggcaaaat gagatcccgg
     2401 cgatcgttaa accgtttatc gatcgcatga atcgcaacga gttgtttacc gcaatttgta
     2461 gcgggatggc gtccattgct ggttcgatga tgattggtta tgccggaatg ggcgtaccaa
     2521 ttgactacct gttagcggca tcgctgatgg cgatcccagg tggtattttg tttgcacgta
     2581 ttcttagccc ggccaccgag ccttcgcagg tcacatttga aaatctgtcg ttcagcgaaa
     2641 cgccgccaaa aagctttatc gaagcggcgg cgagcggtgc gatgaccggg ctgaaaatcg
     2701 ccgctggtgt agcgacggtg gtaatggcat ttgtcgcaat tattgcgctg atcaacggca
     2761 ttatcggcgg aattggtggc tggtttggtt tcgccaatgc ctctctggaa agtatttttg
     2821 gctatgtgct ggcaccgctg gcgtggatca tgggtgtgga ctggagtgat gccaatcttg
     2881 cgggtagcct gattgggcag aaactggcga ttaacgaatt cgtcgcttac ctgagtttct
     2941 ccccatacct gcaaacgggc ggcacgctgg aagtgaaaac cattgcgatt atctcctttg
     3001 cgctttgtgg ttttgctaac tttggttcta tcggtgttgt cgttggcgca ttttcggcta
     3061 tttcgccaaa acgcgcgccg gaaatcgccc agcttggttt acgggcgctg gcagcagcaa
     3121 cgctttccaa cctgatgagt gcgactattg ccgggttctt tattggttta gcttgagttt
     3181 cattgccgga tgtacgcgct tattaagcgt tgcatccggc aat
//
LOCUS       DAJVUY010000265         3203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.271, whole genome shotgun sequence.
ACCESSION   DAJVUY010000265 DAJVUY010000000
VERSION     DAJVUY010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.271"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            102..3005
                     /locus_tag="OQQ72_004124"
     rRNA            102..3005
                     /locus_tag="OQQ72_004124"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ72_004125"
     rRNA            3101..>3203
                     /gene="rrf"
                     /locus_tag="OQQ72_004125"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          853 a          701 c          991 g          658 t
ORIGIN      
        1 tcaagctgaa aattgaaaca ctgaacaacg aaagttgttc gtgagtctct caaattttcg
       61 caacacgatg atgaatcgta agaaacatct tcgggttgtg aggttaagcg actaagcgta
      121 cacggtggat gccctggcag tcagaggcga tgaaggacgt gctaatctgc gataagcgtc
      181 ggtaaggtga tatgaaccat tataaccggc gatttccgaa tggggaaacc cagtgtgatt
      241 cgtcacacta tcattaactg aatccatagg ttaatgaggc gaaccggggg aactgaaaca
      301 tctaagtacc ccgaggaaaa gaaatcaacc gagattcccc cagtagcggc gagcgaacgg
      361 ggagcagccc agagcctgaa tcagtgtgtg tgttagtgga agcgtctgga aaggcgtgcg
      421 atacagggtg acagccccgt acacaaaaat gcacatattg tgagctcgat gagtagggcg
      481 ggacacgtgg tatcctgtct gaatatgggg ggaccatcct ccaaggctaa atactcctga
      541 ctgaccgata gtgaaccagt accgtgaggg aaaggcgaaa agaaccccgg cgaggggagt
      601 gaaaaagaac ctgaaaccgt gtacgtacaa gcagtgggag cacgcttagg cgtgtgactg
      661 cgtacctttt gtataatggg tcagcgactt atattctgta gcaaggttaa ccgaataggg
      721 gagccgaagg gaaaccgagt cttaactggg cgttaagttg cagggtatag acccgaaacc
      781 cggtgatcta gccatgggca ggttgaaggt tgggtaacac taactggagg accgaaccga
      841 ctaatgttga aaaattagcg gatgacttgt ggctgggggt gaaaggccaa tcaaaccggg
      901 agatagctgg ttctccccga aagctattta ggtagcgcct cgtgaattca tctccggggg
      961 tagagcactg tttcggcaag ggggtcatcc cgacttacca acccgatgca aactgcgaat
     1021 accggagaat gttatcacgg gagacacacg gcgggtgcta acgtccgtcg tgaagaggga
     1081 aacaacccag accgccagct aaggtcccaa agtcatggtt aagtgggaaa cgatgtggga
     1141 aggcccagac agccaggatg ttggcttaga agcagccatc atttaaagaa agcgtaatag
     1201 ctcactggtc gagtcggcct gcgcggaaga tgtaacgggg ctaaaccatg caccgaagct
     1261 gcggcagcga cgctgatgcg ttgttgggta ggggagcgtt ctgtaagcct gtgaaggtgt
     1321 gctgtgaggt atgctggagg tatcagaagt gcgaatgctg acataagtaa cgataaagcg
     1381 ggtgaaaagc ccgctcgccg gaagaccaag ggttcctgtc caacgttaat cggggcaggg
     1441 tgagtcgacc cctaaggcga ggccgaaagg cgtagtcgat gggaaacagg ttaatattcc
     1501 tgtacttggt gttactgcga aggggggacg gagaaggcta tgttggccgg gcgacggttg
     1561 tcccggttta agcgtgtagg ctggttttcc aggcaaatcc ggaaaactaa ggctgaggcg
     1621 tgatgacgag gcactacggt gctgaagcaa caaatgccct gcttccagga aaagcctcta
     1681 agcatcaggt aacatcaaat cgtaccccaa accgacacag gtggtcaggt agagaatacc
     1741 aaggcgcttg agagaactcg ggtgaaggaa ctaggcaaaa tggtgccgta acttcgggag
     1801 aaggcacgct gatatgtagg tgaagtccct cgcggatgga gctgaaatca gtcgaagata
     1861 ccagctggct gcaactgttt attaaaaaca cagcactgtg caaacacgaa agtggacgta
     1921 tacggtgtga cgcctgcccg gtgccggaag gttaattgat ggggtcagcg caagcgaagc
     1981 tcttgatcga agccccggta aacggcggcc gtaactataa cggtcctaag gtagcgaaat
     2041 tccttgtcgg gtaagttccg acctgcacga atggcgtaat gatggccagg ctgtctccac
     2101 ccgagactca gtgaaattga actcgctgtg aagatgcagt gtacccgcgg caagacggaa
     2161 agaccccgtg aacctttact atagcttgac actgaacatt gagccttgat gtgtaggata
     2221 ggtgggaggc tttgaagtgt ggacgccagt ctgcatggag ccgaccttga aataccaccc
     2281 tttaatgttt gatgttctaa cgttgacccg taatccgggt tgcggacagt gtctggtggg
     2341 tagtttgact ggggcggtct cctcctaaag agtaacggag gagcacgaag gttggctaat
     2401 cctggtcgga catcaggagg ttagtgcaat ggcataagcc agcttgactg cgagcgtgac
     2461 ggcgcgagca ggtgcgaaag caggtcatag tgatccggtg gttctgaatg gaagggccat
     2521 cgctcaacgg ataaaaggta ctccggggat aacaggctga taccgcccaa gagttcatat
     2581 cgacggcggt gtttggcacc tcgatgtcgg ctcatcacat cctggggctg aagtaggtcc
     2641 caagggtatg gctgttcgcc atttaaagtg gtacgcgagc tgggtttaga acgtcgtgag
     2701 acagttcggt ccctatctgc cgtgggcgct ggagaactga ggggggctgc tcctagtacg
     2761 agaggaccgg agtggacgca tcactggtgt tcgggttgtc atgccaatgg cactgcccgg
     2821 tagctaaatg cggaagagat aagtgctgaa agcatctaag cacgaaactt gccccgagat
     2881 gagttctccc tgactccttg agagtcctga aggaacgttg aagacgacga cgttgatagg
     2941 ccgggtgtgt aagcgcagcg atgcgttgag ctaaccggta ctaatgaacc gtgaggctta
     3001 accttacaac gccgaaggtg ttttggcgga tgagagaaag attttcagcc tgatacagat
     3061 taaatcagaa cgcagaagcg gtctgataaa acagaatttg cctggcggcc gtagcgcggt
     3121 ggtcccacct gaccccatgc cgaactcaga agtgaaacgc cgtagcgccg atggtagtgt
     3181 ggggtctccc catgcgagag tag
//
LOCUS       DAJVUY010000266         3195 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.272, whole genome shotgun sequence.
ACCESSION   DAJVUY010000266 DAJVUY010000000
VERSION     DAJVUY010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.272"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            199..939
                     /locus_tag="OQQ72_004126"
     CDS             199..939
                     /locus_tag="OQQ72_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HCS2013654.1"
                     /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(910..1677)
                     /locus_tag="OQQ72_004127"
     CDS             complement(910..1677)
                     /locus_tag="OQQ72_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HCS2013655.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ72_004128"
     CDS             complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="OQQ72_004128"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HCS2013656.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2701..>3195
                     /gene="fadE"
                     /locus_tag="OQQ72_004129"
     CDS             2701..>3195
                     /gene="fadE"
                     /locus_tag="OQQ72_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="functions in fatty acid oxidation; converts
                     acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS2013657.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFF"
BASE COUNT          765 a          810 c          819 g          801 t
ORIGIN      
        1 atcttaggaa ataaatgata catgcgcttt tcggactatt gaaaactgcc cctgtgctaa
       61 atttgtaaac cctgcgccga caggcttgcg taaaactctt ttggtgataa tgtgagcctt
      121 ccaaatccag actattccga tttgggatcc attttgccgt cctggcgtgt gtaaccgttt
      181 tatcaaggaa taagcagtat gcgtaaaatc gcattaattc ttgcgatgtt gttgatcccg
      241 tgcgtttcgt ttgccggttt gctgggcagc agtagctcga ccacgccagt gagcaaagag
      301 tataagcagc agttgatggg atcccctgtc tacatccaga tcttcaagga agaacgtacg
      361 ctcgatctct acgtcaaaat gggcgagcaa tatcagctgc tcgacagtta taaaatctgt
      421 aaatattccg gcggcttagg gccaaaacag cgtcagggcg atttcaaaag cccggaaggg
      481 ttttatagcg tccagcgtaa tcagttaaaa ccagacagcc gttactacaa agcgattaat
      541 attggtttcc ccaatgccta tgaccgtgcg catggttatg aagggaaata cctgatgatc
      601 cacggcgatt gtgtttccat cggctgctac gcaatgacca atcagggtat tgatgagatc
      661 ttccagttcg ttactggtgc gctggtgttt ggtcagccga gcgtgcaagt gagtatttac
      721 ccgttccgca tgaccgacgc caatatgaag cgccataaat attccaactt taaggacttc
      781 tgggagcaac tgaagccggg ttacgactac tttgagcaaa cccgtaagcc accgaccgtt
      841 tctgtggtca atggtcgtta cgtggtcagc aagccgttaa gccacgaagt tgtgcagcca
      901 caactggcat caaactacac gctccccgag gcaaaataag cgccattcgc ctggcataat
      961 cttttgccag gtttcattgc ccgtcagcgg ctgtgtcgca atcaccgtga ccacatcatt
     1021 cggtgtggtc tgcgagctga agtcgatttc tacatcctga tccagcagcg ttgccacgcc
     1081 aaacggtgcg cggcgggtga tccagtgcag attcgtcgag caatacgcca ttacatagcg
     1141 cccatccgaa agcagcatgt tgaaaacgcc cttctgccgc agttcgtccg ccagtgaagc
     1201 gatatattta aacactgctg ccatgttgcc cggcgtgcgc gggtaacgct gcgttaattt
     1261 atgcagcagc cagcagaagg ctttttcgct gtcggtttcg cctaccgggc ggaagttgcc
     1321 ggtttccagt gatttgtagc ccgtcagttg tccgttatgg gcataagtcc agttacgccc
     1381 ccataactcg cgggtaaatg ggtgagtatt ttccaacgcc acctcgcccc gattagcctg
     1441 gcgaatatga gccaccaccg aacaggattt tatcgggtag tcctggacaa gtttggcgat
     1501 gggggaatta aagctgggtt gtggatcttt aaatgtgcga cagcctttac cttcgtaaaa
     1561 ggtaatgccc cagccatctt tatgtggccc ggttccacca ccacgctgta caagtccggt
     1621 gaaactaaag cagatatcgg tagggacgtt ggcgctcatc ccgagcaatt cgcacatggg
     1681 taacctccac aacagcggga gcgcatggcc cccggcgaag attgatttaa gaattttcag
     1741 gtcggatgcg gcgtaaacga attattcggc ctacggttcg cgtacagatt tgtaggcatg
     1801 ataagacgcg tcagcatcgc atcaggcatc agcgcacaag tgccggatgc ggcgtaaacg
     1861 ccttatccgg cctacgccag acttacttaa ccatctcttt ttcaattaac tggatcagga
     1921 tatggatcac tttaatgtga atctcctgaa tgcggtcggc ataaccaaag tgcggtacgc
     1981 gaatttcgat atccgccgtg ccagccattt tgccgccgtc tttaccggtc agggtgatca
     2041 ctttcatccc cttctcacgc gccgctgcga tcgctttgat cacgtttgca gagttaccgg
     2101 aggtggagat ccccagcagt acatcgcctt cgcgacctac cgcttcaacg tagcgggaga
     2161 aaatatcatt gaaaccgaaa tcattaccga cgcaggaaat atgactaacg tcagaaatag
     2221 caatcgccgg gtagcccgga cggttttcac ggtagcgacc ggtcaactct tcggcaaagt
     2281 gcatagcgtc gcaatgggaa ccgccgttgc cgcaggaaag cactttgcca ccggctttaa
     2341 agctgtctgc taacaggacc gccgcgcgct gaatggcgtg aatattggcg tcatctttta
     2401 aaaagttagc cagcgtttcc gccgcttcgt tcagttcgtt acgaataaga tcttggtaca
     2461 tgaggatatc cttcagcata aatgtaatag acaaaatgca gtgtaccgga taccgccaaa
     2521 agcgagaagt acgggcaggt gctatgacca ggactttttg acctgaagtg cggataaaaa
     2581 cagcaacaat gtgagctttg ttgtaattat attgtaaata cattgctaaa tgtatttaca
     2641 tccactacaa ccatatcatc acaagtggtc agacctccta caagtaaggg gcttttcgtt
     2701 atgatgattt tgagtattct cgctacggtt gtcctgctcg gcgcgttgtt ctatcaccgc
     2761 gtgagcttat ttatcagcag tctgattttg ctcgcctgga cagccgccct cggcgttgct
     2821 ggtctgtggt cggcgtgggt actggtgcct ctggccatta tcctcgtgcc atttaacttt
     2881 gcgcctatgc gtaagtcgat gatttccgcg ccggtatttc gaggtttccg taaggtgatg
     2941 ccgccgatgt cgcgcactga gaaagaagcg attgatgcgg gcaccacctg gtgggagggc
     3001 gacttgttcc agggcaagcc ggactggaaa aagctgcata actatccgca gccgcgcctg
     3061 accgccgaag agcaagcgtt tctcgacggc ccggtagaag aagcctgccg gatggcgaat
     3121 gatttccaga ttactcatga gctggcggat ctgccgccgg agttgtgggc gtaccttaaa
     3181 gagcatcgct tcttc
//
LOCUS       DAJVUY010000267         3193 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.273, whole genome shotgun sequence.
ACCESSION   DAJVUY010000267 DAJVUY010000000
VERSION     DAJVUY010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.273"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            88..1116
                     /gene="murB"
                     /locus_tag="OQQ72_004130"
     CDS             88..1116
                     /gene="murB"
                     /locus_tag="OQQ72_004130"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HCS2013658.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
     gene            1113..2078
                     /gene="birA"
                     /locus_tag="OQQ72_004131"
     CDS             1113..2078
                     /gene="birA"
                     /locus_tag="OQQ72_004131"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HCS2013659.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ72_004132"
                     /gene_synonym="panK"
     CDS             complement(2107..3057)
                     /gene="coaA"
                     /locus_tag="OQQ72_004132"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HCS2013660.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
BASE COUNT          875 a          691 c          807 g          820 t
ORIGIN      
        1 ctacaaactc tccctgtcgt cataactaca agccatcccc ccacagatac ggtaaactag
       61 cctcgttttt gcatcaggaa agcagctatg aaccactcct taaaaccctg gaacacattt
      121 ggcattgatc ataatgctca gcacattgta tgtgccgaag acgaacaaca attactcaat
      181 gcctggcagt atgcaaccgc agaaggacaa cccgttctta ttctgggtga aggaagtaat
      241 gtactttttc tggaagacta tcgcggcacg gtgatcatca accggatcaa aggtatcgaa
      301 attcatgatg aacctgatgc gtggtattta catgtaggag ccggagaaaa ctggcatcgc
      361 ctggtaaaat acactttgca ggaaggtatg cctggtctgg aaaatctggc attaattcct
      421 ggttgtgtcg gctcatcacc tatccagaat attggtgctt atggcgtaga attacagcga
      481 gtttgcgctt atgttgattg tgttgaactg gcgacaggca agcaagtgcg cttaactgcc
      541 aaagagtgcc gttttggcta tcgcgacagt atttttaaac atgaatacca ggatcgcttc
      601 gccattgtag ccgtaggtct gcgtctgcta aaagagtggc aacctgtact aacgtatggt
      661 gacttaactc gtctggatcc tacaacagta acgccacagc aagtatttaa tgcggtgtgt
      721 catatgcgca ccaccaaact ccctgatcca aaagtgaatg gcaatgccgg tagtttcttc
      781 aaaaaccctg ttgtatctgc cgaaacggct aaagcattac tggcgcaatt tccaacagca
      841 ccaaattacc cccaggcggg tggttcagta aaactggcag caggttggct tattgatcag
      901 tgccagctaa aagggatgca aatgggtggg gctgcggtgc accgtcaaca ggcgttagtt
      961 ctcattaatg aagacaatgc aaaaagcgaa gatgtggtgc aactggcaca ccatgtaaga
     1021 caaaaagtgg gtgaaaaatt taatgtctgg cttgagcctg aagtccgctt tattggtgca
     1081 tcaggtgaag tgagcgcagt ggagacaatt tcatgaagga taacaccgtg ccactgaaat
     1141 tgattgccct gttagcgaac ggtgaatttc actctggcga gcagttgggt gaaacgctgg
     1201 gaatgagccg ggcggctatt aataaacaca ttcagacact gcgtgactgg ggcgttgatg
     1261 tctttaccgt tccgggtaaa ggatacagcc tgcctgagcc catccagtta cttaatgctg
     1321 aacagatatt gggtcagctg gatggcggta gtgtagccgt gctgccagtt attgactcca
     1381 cgaatcagta ccttcttgat cgtatcggag agcttaaatc gggcgatgcc tgtgttgcag
     1441 aataccagca ggctggccgt ggtcgccggg ggcggaaatg gttttcgcct tttggcgcaa
     1501 acttatattt gtcgatgttc tggcgtctgg aacaaggccc ggcggcggcg attggtttaa
     1561 gtctggttat cggtatcgtg atggcggaag tattacgcaa gctgggagca gataaagttc
     1621 gtgtcaaatg gcctaatgac ctctatctgc aggatcgcaa gctggcaggc attcttgtgg
     1681 agctgactgg caaaactggc gatgcggcgc aaatagtcat tggagccggg atcaacatgg
     1741 caatgcgccg tgttgaagag agtgtcgtta atcaggggtg gatcacgctg caggaagcgg
     1801 ggatcaatct cgatcgtaat acgttggcgg ccatgctaat acgtgaatta cgtgctgcgt
     1861 tggaactctt cgaacaagaa ggattggcac cttatctgtc gcgctgggaa aagctggata
     1921 attttattaa tcgcccagtg aaacttatca ttggtgataa agaaatattt ggcatttcac
     1981 gcggaataga caaacagggg gctttattac ttgagcagga tggaataata aaaccctgga
     2041 tgggcggtga aatatccctg cgtagtgcag aaaaataaga aaggggagta ttcgctcccc
     2101 tgcaaattat ttgcgtagtc tgacctcttc taccgcatga ttagcacttt tcgtcaggat
     2161 taaactggcg cgctcacgag taggtagaat attttgcttt aagttcagcc agttgatctc
     2221 tttccacaat gtcatggcag tcttaatcgc ttcttcttta gttaatttcg cgtagttatg
     2281 aaaataggaa tccgggtcgg taaaagcccc ttcgcggaat ttcaggaaac ggttgatata
     2341 ccacgtctga agtaagtctt ccggtgcatc aacatatatc gaaaaatcga caaaatcaga
     2401 aacaaataca tgatgtggat cgtgtggata atccattccg ctctgtaaga catttaaccc
     2461 ttcaagaatt aaaatatcag gctgaacaac agttttatct ccatccggga tcacatcata
     2521 aataagatgc gagtaaacag gggctgtaac gtttggcacg ccggacttga gatcggaaac
     2581 aaacttcacc aggcgatgca tatcatacga ttccgggaag cctttcttct tcatcagacc
     2641 acgttctttc agaacctgat tagggtgaag gaagccatct gtagtgatca gttcaacacg
     2701 acgatgttcc ggccaacggc ttaatagcgc ctgcaataca cgggcggttg tacttttccc
     2761 caccgcgaca ctaccagcaa tactgataat gtaaggaatg cgttgcccgt tggtaccaag
     2821 aaactgttcc agaactgcct gacggcgcag attcgagctt atatagaagt tcagcaaacg
     2881 tgacagaggt aaatagatct cggcaacttc ttctaacgag agatcttcat taataccttt
     2941 gagacgggcg atctcatctt ccgataacgt cataggtacg gaatcacgct gagctgccca
     3001 ctggttgcgg tcaaactgta ggtaaggcgt cattaacgtt tgctctttta tactcataag
     3061 catgtttctg gcggtcatag ctctatcggc aaagcgatat ttgccatggc gcgtcacagt
     3121 tctgttgaat gggttaatgg gcaggagggt aacaccagat ggggaggaat aataagaaaa
     3181 aatctctcct agg
//
LOCUS       DAJVUY010000268         3173 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.274, whole genome shotgun sequence.
ACCESSION   DAJVUY010000268 DAJVUY010000000
VERSION     DAJVUY010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.274"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            346..505
                     /locus_tag="OQQ72_004133"
                     /pseudo
     CDS             346..505
                     /locus_tag="OQQ72_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066419.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(723..2813)
                     /gene="iha"
                     /locus_tag="OQQ72_004134"
     CDS             complement(723..2813)
                     /gene="iha"
                     /locus_tag="OQQ72_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HCS2013661.1"
                     /translation="MRITTLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTNAAA
                     SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDG
                     VRQGGSSDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN
                     ADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSL
                     SDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGY
                     DRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRE
                     LKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDE
                     WHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLH
                     KGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSY
                     SINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSY
                     TPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDEKGEYLKAW
                     TVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYSAGKSTLYAGDYFQTGSSTTGYV
                     IPERNYWMSLNYQF"
BASE COUNT          795 a          836 c          732 g          810 t
ORIGIN      
        1 tgacctctca gtaaatatca atacggttct ggcgagccgc ttacgtgcag cagtcttatc
       61 cggcagttta aaggggagga cggagaccaa tgaggcactg gagcagattc agtgcagagg
      121 tgacctgctt tatcaaactt aattgtgaca aaatggcgat tgagaaggtg caattgactt
      181 atccggattc ggtcgtggcg aggtggtgcc cctgcattct gctaaccggg ttatgagcca
      241 ggagtcagcg atagacaaag ggacttatct gaccgggccc ccggaaaaat ggcgggagag
      301 aatgatacct tcctgctgac gagaccggac tttgagatga cgagcgatag tgcggcagtg
      361 atgtacagcc tgatcggtag ctgcaaaact taacggaatc gagccggaaa cgtggctacg
      421 ccacgtgatc agtgtaatca acacctggcc tgccaaccgc atgaaagagt tgttgccctg
      481 gaacgtcact ctctctgtaa actaattttt accccacgtc cttcacggtg cgcttacact
      541 ctggacaagt atgtaaatga taagttaaaa ataatccgtg catttcctgt gacgatatta
      601 gttgttggta acgaaatctc attagcggat cggaaatgca cttaacctaa tacgttgcca
      661 ctgttccgcc aggagttgca gtggcaacgt attctaccgt cagtgatagc gttttgttat
      721 tatcagaact gatagttcag cgacatccag taatttcgct caggtatcac atatcctgtt
      781 gttgatgatc ccgtctggaa gtaatcaccg gcatacagcg tactcttacc ggcactgtac
      841 aggctcacgt cactgtaatc cttgttgagc aggttattca ccgcagcatt cagcgtcagg
      901 gcatccgtca tcttccagga cagacctgca tccaccaccg tccaggcttt caggtattct
      961 cctttctcat catacacttt cttctgtaca gcgctcagtg acgaataatt ctgggtgaaa
     1021 cgtggtgttt tcccgcgata acgggcaccc agccatgatg ccacctcttc ggtgatctgc
     1081 cagttcagtt tcgcattcac catgtgttca ggggtataac tcagcggcgc acctttgtta
     1141 tcaccatcac gttgttcact tcgggtccag gtgtaattca gtgacagcgt gacatcctct
     1201 gaccacagcg gcaatgtgcc ggcaaattcc acaccgtgca accgggcctt tccgctgttt
     1261 acatagctat tggtgttatc atttatggaa taagagacaa tcttgttgga gaagtcagtc
     1321 ataaaacctg tgacattggc attcagaccg gcggggttat cgtaatacac cccagcctca
     1381 taactgacgc tctcttccgg cttcaggtcg gggttaccaa gtagatttgt ttttccctgc
     1441 ccggacacac cactaatccc tttatgtagc tgccccattc tgggtgcctt atatcccgtg
     1501 gtcacaccgc ctttcagcgt ccaggcatct gccacatccc agaccagata tgcacgcgga
     1561 ctgaagtgtc ccccgaattg ctcatgatgt tcatagcggc tgcccgcagt cagcgcaagt
     1621 gcatccgtga gatgccactc atcctcagca aataccgacc agcttttctg ccggaaagtt
     1681 tcacctgtgc tggcaaggac aactccgtct ttcatggacg agctctgaaa ctcgcccccc
     1741 accgtaacca gatgagattc tcccagaggg gtaagcagta atgaattcag gataaggttc
     1801 gattccttaa gctcccgcgg ctgaccggca agcccccatt tgtcgcgctt cagtacactg
     1861 cgtacgagct cacgaccttt attttctgtc tcgttccagt tcagatacga tttccatgtt
     1921 ccgaaggtga aagtatgatc atagccagct gaaattttgt tccgctcata gcgcagggtc
     1981 cggtcatatc cccccgtcag actccccagt tgcccatccc ggttatcata acgctgccgg
     2041 gtggtatcca tatcaaacca gagcacatcc tgctccgacg ccttccagtc aagacgtgca
     2101 ccaagattat aattctgtga ctccgtggga taaggaatac gcgtggctgc tgtatcgctc
     2161 agtgatgtga ccgatgagcc ctgacgctgt tgtgtgctac cgcgtacctg caggctgaca
     2221 gaatcatcca caagggggcc actgctccag aaattaaact ggctgctgtt accccatttg
     2281 ttgctttcct gcagattcag ccctgcattg acggaagaga gccatttgtc tgcattcttt
     2341 ctggtaatga tattcaccac accgcccatc gcatcagagc catacagtgt ggacatcggc
     2401 cccctgataa cctcaatacg ctcaatggcg gccagagggg gcatgaaccc ggtattcatg
     2461 gcagaaaaac cgttgggagt cacgtcactg cttccgccct gacgaacacc atcaatcagt
     2521 atcagcgtgt aactggctgg cattcctcgg atgctgattt ccagcccacc ggttttaccc
     2581 gtaccacttt caacatccac accctctact gatctcagag cctccgccag atcgtggtac
     2641 tggctggact gcaattcctc ctggctaatc acagaaacac tggcggctgc gttagtcagc
     2701 tttttctcat agccggatgc cgagacaatc atcacatcct ctgcagcagc tatgctgctg
     2761 gctgaaaatc cgagacaggg aatgactacg gaagccagag tggttattcg catattacta
     2821 atctccgatc atgttaaccg gcaagacaat acacaaatac aaacaataat gagaataatt
     2881 tatatttgcc ttttacaaaa aataaagatt attaacaaaa ctaaatataa ataacaactg
     2941 cctcggcatg ccagttaaca gctatccgta tggcgtgttc ggttttgcga ataaaaaatg
     3001 gttactgtag aagcggattt ccaccacatg tcaaccatga atggtcagtg gtgcgagacg
     3061 actgggatga tttggtcgat gacttcttcc ggtgaatact gatagaaaca ttgaaatatt
     3121 gtaagagaaa gcgttcaaaa ttctgtggca cgtgaaaaat tctacagcgt cat
//
LOCUS       DAJVUY010000269         3145 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.275, whole genome shotgun sequence.
ACCESSION   DAJVUY010000269 DAJVUY010000000
VERSION     DAJVUY010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.275"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..141
                     /locus_tag="OQQ72_004135"
     CDS             <1..141
                     /locus_tag="OQQ72_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="activator of the allDC-ylbA operon involved in
                     allantoin utilization; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS2013662.1"
                     /translation="MRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNP
                     RS"
     gene            210..1304
                     /gene="mnmH"
                     /locus_tag="OQQ72_004136"
     CDS             210..1304
                     /gene="mnmH"
                     /locus_tag="OQQ72_004136"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS2013663.1"
                     /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMN
                     NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQ
                     RSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ
                     QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDES
                     RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ
                     EYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYD
                     PMYRYQLEKKAEKVVFRGEWAEVAEWVKAR"
     gene            1420..1785
                     /locus_tag="OQQ72_004137"
                     /pseudo
     CDS             1420..1785
                     /locus_tag="OQQ72_004137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014543172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(2347..2796)
                     /locus_tag="OQQ72_004138"
     CDS             complement(2347..2796)
                     /locus_tag="OQQ72_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001348602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013664.1"
                     /translation="MLAISSNLSKMIIFIFAIIIIVVLCVITYLYLYKDESLVSKHYI
                     NYMAIPENDGVFTWLPDFFSHVAVDISIYTNVEDDYFFSYFSLTNDDGGRFKKTLTVR
                     AREQVAKIVSKNDPDTKKVWCKYGKIPGQGDGVNLFLLVKLMLRIIL"
     gene            complement(2777..3145)
                     /locus_tag="OQQ72_004139"
                     /pseudo
     CDS             complement(2777..3145)
                     /locus_tag="OQQ72_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308587.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
BASE COUNT          841 a          727 c          712 g          865 t
ORIGIN      
        1 atgcgccctc cttcgccatt gagtctggca tggcgcaaat ttggcagcgg caaagcggta
       61 gaagatattg tgaccttgtt tacccagcgc aggccggaaa tcagcggatt tttagaaatt
      121 ttcggcaacc cacgcagtta aaaatcaagt ttccttgcgc gttggcgcgt aaaatagcgc
      181 gcaagctgat ttgaggttca cttttaacta tgcaagagag acacacggaa caggactatc
      241 gtgccctgct gattgctgat acgcccatta ttgatgttcg cgcccctatc gagtttgagc
      301 aaggcgcaat gcccgccgct atcaatctgc cgttaatgaa taacgatgaa cgcgccgccg
      361 ttggcacctg ctataaacag caagggtcag acgcggcgct ggcgctgggg cataaactgg
      421 tggcgggtga aattcgtcag cagcgcatag acgcctggcg ggcagcgtgc ctgcaaaatc
      481 cgcaaggtat tctctgctgt gcccgtggcg gtcaacgctc acatattgtg caaagctggt
      541 tgcatgcagc ggggattgat tatccgctgg tggaaggcgg ttataaggca ctgcgccaga
      601 ccgcgattca ggcgactatt gaactggcac aaaaaccgat agtgctgatt ggcggttgta
      661 ccggcagcgg taaaacgctg ttagtgcagc aacagccgaa cggtgtcgat ctggaagggc
      721 tggcgcgtca tcgcggttcg gcgtttggtc gcacgttaca accacaactt agccaggcga
      781 gttttgaaaa tctgctggct gccgaaatgc taaaaaccga cgcccgtcag gatttgcgcc
      841 tgtgggtgct ggaagatgaa agccggatga tcggttcgaa tcacctgccg gaatgtctgc
      901 gcgagcgaat gactcaggcg gcgattgcgg tggtagaaga tccgtttgag atccgtcttg
      961 aacgcctgaa cgaagagtat ttcttgcgta tgcatcatga ttttacccac gcgtacggcg
     1021 acgaacaggg ctggcaggaa tattgcgaat acctgcatca cggactttcg gctattaagc
     1081 gtcggctggg gttacagcgc tataacgaac tcgctgccca gctggatacg gcgctgacaa
     1141 cgcaactcac caccggcagc accgacggtc atctggcctg gctggtgccg ttacttaaag
     1201 aatattacga cccaatgtat cgctatcagc ttgagaaaaa agcggaaaaa gttgtctttc
     1261 gcggtgagtg ggcggaagtg gcggaatggg ttaaggcgcg gtaatgaggg acgtatttgt
     1321 attagtcgcg acttgatctg acacatggcc ttgaaaggtt gagagttacc ggttttgata
     1381 tgagtgtcga atccttatcc aaaacaagag gtaactctca tgcttcatac tgccaatccc
     1441 gtcatcaaac acaaagccgg tttgctcaat ctggctgaag aactcagcaa cgtatcaaaa
     1501 gcctgtaaaa tcatgggcgt ttcgcgtgat acgttttatc gttaccgcga actggtcgct
     1561 gaaggcggtg tggatgcgca gattaatcgt agtcgccgcg ctcctaacct taagaaccgt
     1621 accgatgagg caactgaaca ggctgttgtt gattacgccg tcgctttccc gacacatggt
     1681 cagcaccggg ccagcaacga gctgcgtaaa caggggggtt ttatctccga cagtggtgtc
     1741 cgttctgtct ggttactcca taaccttgag aatctcaaaa gacgatactg aacaaatttt
     1801 atcaggtgac gttccgtaaa aagttgtatg gagttctcga tgcagtcggc gcgactatca
     1861 gtacccccgc tgaaccctgg actatcgggc cgccgtactg gggcatgtca ccctggcgtg
     1921 ccgctggttt tccgctaatg gtttatttcc tctttctttc ccggcaagaa tttattttaa
     1981 tccggaagga ttatttattt tcagataggg actcacatta aacacgtaac attttaatta
     2041 atgcatggct gaatatgtat tacacaatgt cagatatcgt aaaagaccag tgcaattcta
     2101 tgtaaactct ctgactgttc attttatttg ttgtttcagg gtcggaactc accctcaata
     2161 aacaactgaa tacgagtaga tattcatcgt ctgagctata tggctttaca caatagccga
     2221 catgtctttt ctcagtcagg aattttactt ttcctcacta cgaagttgac gacttcgata
     2281 tgggatagac tcttaattca agcaattact ctgcacaagc atcaggcaat ccagctccaa
     2341 tatttgttat aaaataatgc gtaacattaa tttcaccaac aaaaaaaggt ttacaccatc
     2401 cccttgccct ggtatcttac catatttaca ccacactttt tttgtatctg gatcattctt
     2461 tgatacgatt ttcgccactt gttccctggc cctcactgtc aatgttttct taaacctacc
     2521 cccatcatca tttgttaggg aaaaataaga aaaaaaataa tcatcttcta catttgtgta
     2581 tattgatata tccaccgcta cgtgcgaaaa aaaatctggg agccatgtaa aaactccatc
     2641 attttctggt attgccatat agtttatgta atgtttactt acaagagatt catctttgta
     2701 taaataaaga taagtaatta cgcataaaac aacaatgatt ataatagcaa aaataaatat
     2761 tatcatcttt gatagattac ttgagatagc cagcatcttg taaagccttt atcgtttttt
     2821 tatgctctgg attaatataa tcactacatc tatctgagca atctgttgtt gatggacatg
     2881 tcaacccatg gtcatttaca gccaagtctt ttttattatc ttcaatcatt tcagaatggg
     2941 atagctttac ttttctgccg tacataccga acagatttaa tccgtaatct ctaatctctt
     3001 tttcataacc cagccctttc gccgatcggc taacaccagc gtcatttaat ttagacactc
     3061 gacaaaatgc catacaatgg aaaaattgat cagtcccacc taaatttaat ctcttcataa
     3121 gtatcagata atatatccca tgctc
//
LOCUS       DAJVUY010000270         3088 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.276, whole genome shotgun sequence.
ACCESSION   DAJVUY010000270 DAJVUY010000000
VERSION     DAJVUY010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.276"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..192)
                     /locus_tag="OQQ72_004140"
     CDS             complement(<1..192)
                     /locus_tag="OQQ72_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS2013665.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQR"
     gene            385..887
                     /locus_tag="OQQ72_004141"
                     /pseudo
     CDS             385..887
                     /locus_tag="OQQ72_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(933..1349)
                     /gene="rraB"
                     /locus_tag="OQQ72_004142"
     CDS             complement(933..1349)
                     /gene="rraB"
                     /locus_tag="OQQ72_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HCS2013666.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            1511..2515
                     /gene="argF"
                     /locus_tag="OQQ72_004143"
     CDS             1511..2515
                     /gene="argF"
                     /locus_tag="OQQ72_004143"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS2013667.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            complement(2587..3069)
                     /locus_tag="OQQ72_004144"
     CDS             complement(2587..3069)
                     /locus_tag="OQQ72_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013668.1"
                     /translation="MIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILV
                     NDIFLKDFFMKQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEKTNEIVNNNPGYV
                     VEIFEEKMGNELKIRTRMMEILRDGKINICEYINKEQLEKLNPPEDLRIAIKKLGWNN
                     "
BASE COUNT          864 a          701 c          659 g          864 t
ORIGIN      
        1 tcgttgtccg ttaacttcca tattagcata gagataacgc ttacatttca ttaatgccca
       61 tggtaaatag atacctagcg ttataatcgt taacaacaca ttcaccacac aaataagaaa
      121 atatctctca cctgtaccat gaaaaacaaa cgaatgggac ggaacatcca tttcattaat
      181 aacttgagcc ataaaaattc cctgaattaa aaaatccatt gatataattt atatatacag
      241 acagtaaaat gttctgccac gttacaatac tcttatcagt aataggctgg caaaaacttt
      301 attgctttat aagatgcttg cgcacgtaag aagagagtgg tattaaacaa atgtataatt
      361 actttatttt tattgggtta aactatgaat aacattgcgc cgcaatcacc tgtaatgcgt
      421 cgcctgacgc tacaggataa tcctgctatt gcccgcgtca ttcgtcaggt atccgccgaa
      481 tacggtctta ccgctgataa aggctacacc gtcgccgatc cgaatcttga cgaactgtat
      541 caagtgtata gtcagccggg tcatgcatat tgggtggttg agtacgaggg tgaagtggtc
      601 ggcggcggtg ggattgcgcc attagcaggt agtgaatcgg acatttgcga actgcaaaag
      661 atgtattttc ttccggctat tcgcggtaaa gggctggcga aaaaactggc cttaatggtg
      721 atggagcagg cacgagagat gggcttcaaa cgctgctatc tggaaacgac cgctttttaa
      781 aggaagccat tgcgctttat gagcatttgg gctttgagca tatcgactat gcacttggct
      841 gcacgggcca tgttgattgt gaagtgcgga tgttgcgcga actctaaaaa aatgcccgct
      901 agtgtgtgct atcgggcatt ttaatcaatt aattagtggc gaaccccgtc atcgtcttca
      961 tcgacaaaat cttcatcgtc gccgtcttcg ccattaggat cttcaaaata agtgccccaa
     1021 ccgtcgtact caacgtcaaa tttctccgcc aatgtcatca gttgttcaac ctgggcatcg
     1081 atcagatcgg cattcaacgc gcactcgctg aggatgtcgc agcaaatcac gatatcacca
     1141 tcttcaactt ccagctcttc tggatcggtc acttcgtaac cgagtttaaa cgcttcaact
     1201 gctgcttttt ccagggtttc cagatcgtct gcggaaagat ggtgttcgat ggtgtacagc
     1261 gcgtccggat cgctgccatc ttccagtaat tcttcaataa tcaaacgagt ttcttcacgc
     1321 tgttcttcca gttgttccgg gtttgccatg gctcattcct cttaatgtcc tgccgatact
     1381 cttattgtca cataccactg acattgcctc cacctttgtg acaaagattt atgctttaga
     1441 cttgcaaatg aataatcatc catataaatt gaattttaat tcattgaggc gttagccaca
     1501 ggagggatct atgtccgggt tttatcataa gcatttcctg aaattactcg atttcacgcc
     1561 agctgaactc aacagcctgc tgcagttagc cgcgaagctg aaagccgata agaaaagcgg
     1621 caaagaagaa gccaaactca ctggtaaaaa catcgcgctc atcttcgaaa aagactcgac
     1681 ccgtacccga tgctctttcg aagttgccgc atatgaccag ggtgctcgcg ttacttatct
     1741 cggcccaagc ggcagtcaga ttggtcataa agagtcgatt aaagacactg cccgcgtgct
     1801 gggtcgcatg tatgacggta ttcagtatcg cggctatggt caggagattg ccgaaacact
     1861 ggcggaatac gctggcgtgc cggtatggaa cggcctgacc aatgagtttc accccacgca
     1921 gttgctggcg gatctcctca ccatgcagga gcatttaccc ggtaaagcat tcaacgaaat
     1981 gacgctggtc tatgcaggtg acgcacgtaa caacatgggc aattcgatgc tcgaagctgc
     2041 ggcgcttacc ggtctggatt tgcgtctggt cgcgccacag gcatgctggc cggaagctgc
     2101 gctggttacg gaatgccgcg ccctggcaca gcaaaatggc gggaatatta cgctgacgga
     2161 agatgtagcc aaaggagttg aaggtgctga ctttatctat accgatgtat gggtgtcgat
     2221 gggggaagca aaagagaaat gggcagaacg gattgcatta ctgcgtgatt atcaggtgaa
     2281 cagcaagatg atgcagttga ccggtaaccc ggaggtcaaa ttcctccact gcctgcccgc
     2341 gtttcatgac gaccagacga cgcttggtaa gaaaatggcg gaagagtttg gcctacatgg
     2401 cggaatggaa gtgactgatg aggtcttcga atctgccgcc agcattgttt ttgatcaggc
     2461 ggaaaaccgc atgcatacca tcaaagcggt gatggtcgcg acgctcagta aataattgat
     2521 atcgcaataa agatgccggg aaatacaaaa acatcccggc atcacattat tttatgcagt
     2581 aatagttcaa ttattccacc ccaatttttt tattgctata cgtaaatctt ccggaggatt
     2641 taatttttct aactgttctt tattaatata ttcacatata tttattttcc catcccggag
     2701 gatttccatc attcttgttc taatttttaa ttcattaccc atcttttctt caaaaatctc
     2761 aacgacataa cccggattgt tatttacaat ttcatttgtt ttttcttcat taccataaac
     2821 atatcctaac tcattaagat acagctgttc gccctcatac ttcttaagta attgatagaa
     2881 gtaccacttc gcaaaatcag gttgcttcat gaaaaaatcc ttcaaaaaaa tatcatttac
     2941 taaaatgctg acaggcactt cattaaatag caacttaaca tcatcaaata accttagtat
     3001 taagcgtgat ttttcttgat tgcttaagtt aaaatcattg acatatgcaa ccaacttatc
     3061 ccaaatcaat tcctgtaatt tacggcta
//
LOCUS       DAJVUY010000271         3056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.277, whole genome shotgun sequence.
ACCESSION   DAJVUY010000271 DAJVUY010000000
VERSION     DAJVUY010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.277"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            274..534
                     /gene="repA"
                     /locus_tag="OQQ72_004145"
     CDS             274..534
                     /gene="repA"
                     /locus_tag="OQQ72_004145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HCS2013669.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            758..832
                     /gene="tap"
                     /locus_tag="OQQ72_004146"
     CDS             758..832
                     /gene="tap"
                     /locus_tag="OQQ72_004146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HCS2013670.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            825..1682
                     /gene="repA"
                     /locus_tag="OQQ72_004147"
     CDS             825..1682
                     /gene="repA"
                     /locus_tag="OQQ72_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HCS2013671.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(2735..>3056)
                     /locus_tag="OQQ72_004148"
     CDS             complement(2735..>3056)
                     /locus_tag="OQQ72_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000484486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS2013672.1"
                     /translation="SRGIRRGQRYRLVFQFPIREQAAAFLGVVPVEKYSGTSVRGCPK
                     LSKIGPPEIRAKLYLASLCGLRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYG
                     VLKT"
BASE COUNT          801 a          832 c          735 g          688 t
ORIGIN      
        1 ggctgatcag cagtcaccgg aacatcgtag ctgacgcctt cacgttgctc agttgtccaa
       61 ccccggaaac gggaaaaagc aagttttcct cgctcccggc gtttccataa ctgaaaacca
      121 tactatttca cagtttaaat cacattaaac gacagtaatc cccgttgatt tgtgcgccaa
      181 cacagatctt cgccacaatt ctcaagtcgc tgatttcaaa aaactgtagt atcctctgcg
      241 aaacgatccc tgtttgagta ttgaggaggc gagatgtcgc agacagaaaa tgcagtgact
      301 tcctcattga gtcaaaagcg gtttgtgcgc agaggtaagc ctatgactga ctctgagaaa
      361 caaatggccg ctgttgcaag aaaacgtctt acacacaaag agataaaagt ttttgtcaaa
      421 aatcctctga aagatctcat ggttgagtac tgcgagagag aggggataac acaggctcag
      481 ttcgttgaga aaatcatcaa agatgaactg cagagactgg atatactaaa gtaaagactt
      541 tactttgtgg cgtagcatgc tagattactg atcgtttaag gaattttatg gctggccacg
      601 ccataaggtg gcagggaact ggttctgatg tagatgtaca ggagccagaa aagcaaaaac
      661 cccgataatc ttctttaact ttggcgagtc agaaagatta ccggggccca cttaaaccgt
      721 atagccaaca atcaagctat gcggggagta tagttatatg cccggaaaag ttcaagactt
      781 ctttctgtgc tcgctccttc tgcgcattgt aagtgcagga tggtgtgact gatcttcaac
      841 aaacttatta ccgccaggta aagaacccga atccggtgtt cacaccccgt gaaggtgccc
      901 ggacgcttcc gttctgcggg aaactgatgg aaaaggcggt gggcttcacc tcccgttttg
      961 atttcgccat tcatgtggca catgcccgtt cgcttggtct gcgtcggcgc atgccaccgg
     1021 tactacgtcg ccgggccatt gatgcgctgc tgcaggggct gtgttttcac tatgacccac
     1081 tggccaaccg cgtccagtgt tccatcacca cgctggccat tgagtgcgga ctggcgacgg
     1141 agtctgctgc cggaaaactc tccatcaccc gggccacccg ggccctgacg ttccttgcag
     1201 agctgggact gattacctac cagacggaat atgacccgct tatcgggtgc tacattccga
     1261 ccgatatcac gttcacatct gcactgtttg ctgccctcga tgtatcagag gaggcagtgg
     1321 ccgccgcgcg ccgcagtcgt gtggaatggg aaaacagaca gcgcaaaaag caggggctgg
     1381 ataccctggg tatggatgaa ctgatggcga aagcctggcg ttttgttcgt gagcgtttcc
     1441 gcagttacca gacagagctt aagtcccgtg gaatgaagcg tgcccgtgcg cgtcgtgatg
     1501 cggacaggca gcgtcaggat attgtcaccc tggtgaaacg gcaactgacg cgtgaaatct
     1561 cggaagggcg cttcactgcc agtcgtgagg cggtaaaacg tgaagtggag cgtcgtgtga
     1621 aggagcgcat gattctgtca cgtaaccgta attacagccg gctggccaca gcttccccct
     1681 gaaagtgacc tcctcagaat aatccggcac gcgccggagg cattcgcacg cctgaagccc
     1741 gccagtgcac aaaaaatcag cgctacatac aaaaaacaac ctcatcatcc accttctggt
     1801 gcatccggtc ccccctgttt ttgatacaaa acacgcctca cagacgggga attttgctta
     1861 tccacattaa actgcaaggg acttcaccat aaggttacaa ccgttcacgt cataaagcgc
     1921 cagccgtcag ccctacaggg tgcaatgtat cttttaaaca cctgtttata tctcctttaa
     1981 actacttaat tacattcatt taaaaagaaa acctgttcac tgcctgtcct gtggacagac
     2041 agatatgcac ctcccaccac aagcggcggg ccccgaccga agccggttta gttacaacat
     2101 gcaaacataa acccctaaaa aacccaagtc cgacgcagaa ctgaaaccac aaagcccctc
     2161 cctcataact gaaaagcggc cccgccccgg cccgaagggc cggaacagag tcgcttttaa
     2221 ttatgaatgt tgtaactata ttatcatcgc tgtcagtcct ctggctggac gtatcgagta
     2281 cacgctcgta agcggccctc acggccctca cggcccgcta acgcggagat acgccccgac
     2341 tgcgggtaaa cccttgtcgg gctccgaccg cgcacagaag ctctgtcata gctgaaaacg
     2401 ggtatggctt ggcagctacc atgttctgtc aagaaaaatc gcttgaactc cgacgtacag
     2461 ccccctaagt actgccagca agctgtcagc actaagtccc cgatacagcg cggcatagcc
     2521 gcgctaacgg ggttaaaagg gcttacctat acttcatcat cgctgaaagc ccgcatggcc
     2581 tcgcagggca gagatgggat aggtgaaacc tatcaatacg taccggctta cgccgggctt
     2641 cggcggtgtt actcctgtac catatgtaac tacatcatgc cgccttacat gcgctacgcg
     2701 catatgaaga caaatagccc acatcaaacg gtttttaggt cttcagtacg ccatagcacc
     2761 agtgcacgag ttttctcatc agcgcaccaa tggcacacat tttggcctta cctctcaggc
     2821 ataatcgctc atacatcgct ttcatcaatg ggttaaatct cagaccacac aacgaagcca
     2881 gatacagttt cgcccggatt tccggcggac caatttttga cagtttcgga caccctctga
     2941 ccgaggtgcc ggaatatttt tcaacgggaa cgacacctaa aaatgcagcc gcctgttcac
     3001 gtataggaaa ttgaaaaacc agacgatacc gctgtccacg ccttatgcca cgtgag
//
LOCUS       DAJVUY010000272         2988 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.278, whole genome shotgun sequence.
ACCESSION   DAJVUY010000272 DAJVUY010000000
VERSION     DAJVUY010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.278"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            577..1293
                     /locus_tag="OQQ72_004149"
     CDS             577..1293
                     /locus_tag="OQQ72_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013673.1"
                     /translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQYFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="OQQ72_004150"
     CDS             1845..2249
                     /locus_tag="OQQ72_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013674.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2988
                     /locus_tag="OQQ72_004151"
                     /pseudo
     CDS             2312..2988
                     /locus_tag="OQQ72_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          833 a          617 c          677 g          861 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattgtcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttgaccaagt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ctagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaga
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aatatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacaccg cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct ctcccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccgg gagtacagat actcggaacc cgtgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttatccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgcg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagcgtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 ggcctgaggt gtactggcaa tagcggacac caccatttgt tctttttc
//
LOCUS       DAJVUY010000273         2921 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.280, whole genome shotgun sequence.
ACCESSION   DAJVUY010000273 DAJVUY010000000
VERSION     DAJVUY010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.280"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(48..232)
                     /locus_tag="OQQ72_004152"
                     /pseudo
     CDS             complement(48..232)
                     /locus_tag="OQQ72_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(394..468)
                     /locus_tag="OQQ72_004153"
     tRNA            complement(394..468)
                     /locus_tag="OQQ72_004153"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(433..435),aa:Arg,seq:cct)
     gene            complement(544..1476)
                     /locus_tag="OQQ72_004154"
     CDS             complement(544..1476)
                     /locus_tag="OQQ72_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HCS2013675.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGIAAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1770..2525
                     /gene="mlaA"
                     /locus_tag="OQQ72_004155"
     CDS             1770..2525
                     /gene="mlaA"
                     /locus_tag="OQQ72_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HCS2013676.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2707..2919)
                     /locus_tag="OQQ72_004156"
     CDS             complement(2707..2919)
                     /locus_tag="OQQ72_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005092548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013677.1"
                     /translation="MDDAKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEK
                     RLQNRQTEYQNEINQLSAPGVNFDDI"
BASE COUNT          729 a          672 c          689 g          831 t
ORIGIN      
        1 atcttttacg gggtgaaggt agatttcgta tgaagggtat ctgttgtctc ctgcaaagtc
       61 ataagcggat attttcctac ggtcagtatt tttttcttac cgtcaatctt gtagcgaagt
      121 tgccatacct tttcccggat acaggaacat aaaggtacag gccattacca tcgagaaggc
      181 ggtatggttt ttctttcggc tttgctgctt caatctgctt aacggtgagc atgggtaaaa
      241 atccggtggg taaaattatt ttatccactt tttacccgtc atggagtgcg gctgtcaacg
      301 atctgacgcg aaccatgacg aaccgtgaat atacggaagg cttgatattc aggggatttt
      361 gcggactggt acggatggga gcgaactgat aaatggtgtc ccctgcagga atcgaacctg
      421 caattagccc ttaggagggg ctcgttatat ccatttaact aagaggacaa tgcggcatga
      481 gtatacccgc taatggactg cggagtaagt acactgccgc tcgattgctt aaaccctcgc
      541 catttatgct gggtttttat catttttctt aatgttttcc gcacgttctg ctttttggcg
      601 tgcttctgct ttgcgcttgt tgctcatgtc gttacggatc tgtgcatgac tcattaacgc
      661 gaagataaag gtgccgccgc agatattccc cgctaaagta ggtagtgcga agggccaaat
      721 gaaatcgctc cagtgcagcg tgccgttaaa caccagatag aggatttcta cagaaccgac
      781 aacgatgtgg gtggtgtcac ccagtgcaat aagccaggtc atcaatataa tcaccacaat
      841 ctttgccgca cccgctgcag gaaacatcca aaccatagtg gcgatcagcc agccggaaat
      901 gatcgcgttg gcaaacatct cgctgggggt gttcttcatc acatccatgc cgattttgac
      961 aaatgcatcg tgagtttctt cattgaagat aggcatatat tcaaatgccc atgcagcaat
     1021 acctgtcccg agaatattac ccagcagcac gacgccccat aatcgcataa gtaagccgac
     1081 gttgctcatt gtcggttttt gcatgacggg tagtaccgca gtcacggtgt tttcggtaaa
     1141 taattgctgg cgggccataa tgacgataat aaaaccaaag gtataaccga gattctccaa
     1201 caagaagctg cccggcacgc cttccagttc gacatgaaat atcccttttg ccagtaacga
     1261 agcgcccatc gacagacccg ccgcaatggc tgaccacagt agtgccattg cgtcgcgttc
     1321 cagctctttt tcaccatcct ggcggatatg ttcatgaatt gccatcgccc gggaggggag
     1381 tcgatcttca tctatttcta tttttttgcc gcgctctttt tcttcgctct caacttcaat
     1441 ttcgtcgctg tgttgatcaa ttttgtcgtt gtccatggtc tcttctcttg aattagcacg
     1501 tatagctaaa gcgtagcggc ttttttgctc gcaactggcg ggagttactc tgaaaatgta
     1561 gaaaaggccg cgtttgcctt tttctgtttc tatagaatca agtagcctac agggcggcga
     1621 ttaccaggct atgatcaaat cagcaaatca gggcgtctgg acatcagttg acgtgctgtt
     1681 acaatcgccc acacctaaac aggcggatac ggtatcgttc cgtcatggat ggcaaactgc
     1741 ataagccata aaaaaacagg gagacattta tgaagcttcg cctgtcggcg cttgctctgg
     1801 gaactacgct tctggtgggg tgtgcgagtt ccggtacaga tcagcaaggg cgttctgacc
     1861 cgttagaagg gttcaaccgc accatgtaca acttcaactt caatgtatta gacccgtata
     1921 ttgttcgacc ggtcgctgtc gcctggcgtg attatgttcc gcaaccggcg cgtaacggtt
     1981 tgagcaactt taccggcaac cttgaagaac ctgcggtgat ggttaactac ttcttgcagg
     2041 gcgaccctta tcaggggatg gtccacttta cccgcttttt cctgaacacc attttgggga
     2101 tgggcggctt tattgatgtt gcagggatgg cgaacccgaa actgcaacgg actgaacctc
     2161 accgcttcgg tagtacgctt ggtcattatg gcgtgggtta tgggccttac gttcagttac
     2221 cgttctacgg tagcttcacg ctgcgtgatg acggtggtga tatggcggat ggtctttacc
     2281 cggttctttc ctggctgacc tggccgatgt ctgtgggtaa atggacgctt gaagggatcg
     2341 aaacccgcgc tcagctgctg gattccgatg gtctgctgcg tcagtcgtcc gatccttata
     2401 ttatggtgcg cgaagcgtac ttccagcgtc atgatttcat cgctaatggc ggcgaactca
     2461 aaccgcagga aaatccgaac gcacaagcga ttcaggatga tttaaaagat attgattctg
     2521 aataagaaac aaataaaaaa ggtgagtcgc aaaactcacc ttttttgttg ttatccctca
     2581 attaccacaa gtaaaaggag ataaaccgac aatgacccgg acgtaatgat gtaaaaatac
     2641 tgatgttcgt cactgactat ttccgatatt caggcgttga aaaatcaaaa aactggaaaa
     2701 ataattttaa atatcatcaa aattaacacc tggcgcagat agttgattaa tttcattttg
     2761 atattccgtc tggcgatttt gaagcctttt ttcaacttta tcttcgagat ccttaaagtc
     2821 tttgtattta ttttcaggat ggtcaacgtc aactttgtta gcgaataaag tagaaattat
     2881 ttcttttaca ttatcgcgtc taaattttgc atcgtccact t
//
LOCUS       DAJVUY010000274         2920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.281, whole genome shotgun sequence.
ACCESSION   DAJVUY010000274 DAJVUY010000000
VERSION     DAJVUY010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.281"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1324
                     /locus_tag="OQQ72_004157"
     CDS             <1..1324
                     /locus_tag="OQQ72_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415419.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS2013678.1"
                     /translation="GLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHT
                     MGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVL
                     FIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETF
                     IPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGS
                     LAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSI
                     DAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVQVAILIMLPTLGIGDMNNLY
                     KWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAF
                     ACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK"
     gene            complement(1325..2233)
                     /locus_tag="OQQ72_004158"
     CDS             complement(1325..2233)
                     /locus_tag="OQQ72_004158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS2013679.1"
                     /translation="MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQR
                     LKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINDARV
                     AARIFLMPLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSGIVEKDMISVAIG
                     PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNI
                     ILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLGDWSTERPGFQIYYPNRQY
                     MSCGLRAFLDYVKTGQISQSQRHRPQ"
     gene            2333..>2920
                     /locus_tag="OQQ72_004159"
     CDS             2333..>2920
                     /locus_tag="OQQ72_004159"
                     /EC_number="1.6.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H oxidoreductase"
                     /protein_id="HCS2013680.1"
                     /translation="MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYR
                     RNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYI
                     DRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED
                     ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL"
BASE COUNT          738 a          622 c          730 g          830 t
ORIGIN      
        1 ggggctggtg gttgtttttt catgggtgtt tatctttgcg ctctatttca caccttatgc
       61 gctaattgtt ggtcagttag gctcgacctt caaagatggg aagggcgggg tcagtacctg
      121 gattaaacac acgatgggac ccggactggc ttatctcgcc gcgtggacct actgggtggt
      181 gcatattccc tatctggcac aaaaacccca ggcaattctg attgcgctcg gttgggcgat
      241 gaaaggcgac ggttcgctaa tcaaagaata ttcagtcgta gcgttacagg ggttaacgct
      301 ggtgctgttt atcttcttta tgtgggttgc ttcacgcggt atgaaatcgc tgaaaatcgt
      361 cggttctgtg gcagggattg cgatgtttgt tatgtcgctc ctgtatgtgg cgatggcggt
      421 aaccgcgcct gcgattactg aagtgcatat tgcgaccaca aacattacct gggaaacgtt
      481 cattcctcat atcgacttta cctacattac cactatttca atgctggttt tcgcggttgg
      541 cggagcagag aagatttctc cttacgttaa tcaaacgcgc aacccaggaa aagaatttcc
      601 aaaagggatg ttatgcctgg cggtgatggt tgcggtttgt gccattctgg gctcactggc
      661 gatggggatg atgtttgact cgcgtaatat cccggatgac ttaatgacta acggtcaata
      721 ttacgccttt cagaagctgg gcgagtatta caacatgggt aatactttaa tggtgattta
      781 cgccattgcg aataccctgg gacaagtagc tgcgctggta ttctcgattg atgccccgct
      841 taaagtgcta ttaggtgatg ctgacagcaa atatattcca gccagtttat gtcgtaccaa
      901 cgcttctggt acgcccgtta atggctattt tctgaccctg gtgcaggtgg caattctgat
      961 tatgctgccg actctcggca tcggtgatat gaacaatctc tataaatggc tgttgaatct
     1021 taactcggta gtgatgccgc tgcgttattt atgggtattt gttgcattta ttgcagtcgt
     1081 tcgcctggcg cagaaatata aaccagaata tgtctttatt cgtaataagc ctctggcaat
     1141 gaccgtcggg atttggtgtt ttgcctttac cgcctttgcc tgtttgacgg ggatcttccc
     1201 gaaaatggaa gccttcactg cagagtggac cttccagttg gcgctgaatg ttgcaacgcc
     1261 gtttgtgctg gtaggattag gactgatttt cccgctgctg gcgcgtaaag cgaatagtaa
     1321 ataattattg tggtcggtga cgctgactct ggctgatctg acccgttttt acataatcga
     1381 gaaatgcgcg caagccgcag gacatatact ggcggtttgg ataatagatc tggaagcctg
     1441 gacgctctgt gctccagtct cccagtacac attctaaacg accagtatca aggtactcct
     1501 tgatctgttc atagagcaga tacccgatac cagcacccat caaaacggcc tccagttcag
     1561 catcaacatc atccagaatg atatttcctg cgacagcaat ttccagctcc tttgcaaatt
     1621 gccagtggaa aggtttgccg ctgggataac gaaaaacaac acattgatga ttaagcagat
     1681 catgaggatg gcggggtttg ccatatcttg caaagtactc tggcgttgct gctacacata
     1741 atttcactgg cgggccgatc gccacgctga tcatatcttt ttcgacgatg ccactaagtc
     1801 gaacgccagc gtcaaagccc tgttggacga tatcgacaag agagtcgtca gttgtgagct
     1861 cgactttaat atcaggatat tcacgtgtga aaccaaccag taaaggcatt aaaaatatac
     1921 gtgcagctac ccgggcgtca ttgattttga gcgttcctgt cggtgtcaga cgaaaatcat
     1981 tcatctcatc taacatgatc tgaatttcgt cgaaagctgg gcgcaatcgt tcatagagat
     2041 tagaacccgc ttccgttaac gatacgcttc gggttgtccg attgaataag cgaattttaa
     2101 gacgttgttc cagtgtttta atactatggc taatggcgga cgaggataag cctaactcat
     2161 cgcccgctgc acgaaagctt tgattacggg ccacggcaaa gaaagtggca aagtcagaca
     2221 tattcatccg cattagtgaa aatccttcat taactcatcc tgaatcatca cgtttacagg
     2281 attatgccgc ctgcgtaaag tgcgctccag aacttaacgt ggaggtaaaa ttatgcagtc
     2341 tgaacgtatt tatttggtat gggcccatcc tcgtcatgat tcattgaccg cacatattgc
     2401 tgatgcgatc catcagcggg caatggagcg gaaaatacag gtgacggaac tcgatttata
     2461 tcggcgtaat ttcaacccag tgatgacgcc ggaagatgaa ccagactgga agaatatgga
     2521 taaacgttat tctccagagg ttcatcagct ttattcagag ctgcttgaac atgacacgtt
     2581 agtggtggtt tttcctctct ggtggtacag cttcccggca atgctaaaag gatatattga
     2641 cagagtatgg aataatgggc tggcttatgg agatgggcac aaattaccat tcaataaagt
     2701 tcgttgggtg gcgctggttg gaggagacaa agaatcattt gtccagatgg gctgggaaaa
     2761 aaatataagc gattatttga aaaatatgtg cagttatctt ggtattgaag atgccgatgt
     2821 cactttcttg tgtaatacag tggtattcga tggggaagaa cttcatgcga gctattatca
     2881 gtcgttatta tctcaggtac gggatatggt agatgcacta
//
LOCUS       DAJVUY010000275         2840 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.282, whole genome shotgun sequence.
ACCESSION   DAJVUY010000275 DAJVUY010000000
VERSION     DAJVUY010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.282"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..135
                     /locus_tag="OQQ72_004160"
                     /pseudo
     CDS             1..135
                     /locus_tag="OQQ72_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
     gene            385..1251
                     /gene="ospB"
                     /locus_tag="OQQ72_004161"
     CDS             385..1251
                     /gene="ospB"
                     /locus_tag="OQQ72_004161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HCS2013681.1"
                     /translation="MNLDGVRPYCRTVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            1581..2321
                     /gene="phoN2"
                     /locus_tag="OQQ72_004162"
     CDS             1581..2321
                     /gene="phoN2"
                     /locus_tag="OQQ72_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAP2 family phosphatase PhoN2"
                     /protein_id="HCS2013682.1"
                     /translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDENMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
     gene            complement(2674..>2840)
                     /locus_tag="OQQ72_004163"
     CDS             complement(2674..>2840)
                     /locus_tag="OQQ72_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HCS2013683.1"
                     /translation="LEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKDSKMIDFLLKN
                     GAVSGKRFER"
BASE COUNT          929 a          517 c          527 g          867 t
ORIGIN      
        1 gcggtaagag aagttcatca tacttggcgc agttacgcga tgtttctgct agaggtgatg
       61 ccgtaaagaa cggcagaaca ttaccggaac aagatagcgg tctacctgca ctggtatcag
      121 acccggggct tccccggatg atctccacgg tactttaggt actgtgtcta tattatgtag
      181 gtaggatcaa ttaactttgt agttgaaatt ctttcattga aataatgaat aaaaaagaca
      241 aaccgcatta aacaatgcca gaatataatt gcatttttgt tccgtttttt taaatcatag
      301 tatacaaaga agcttgcata ctatatgaaa atataacacc ctttactatg atgtttataa
      361 aacaatatat ggagtcatgt aggtatgaat ttagatggtg ttagaccata ctgtagaaca
      421 gtcaataaaa agaatgaaag catatcagat attgcatttg cacatataat aaaaagggta
      481 aaaaattcat catgtactca cccaaaagca gcattggttt ttttaggaga gaaaggtttt
      541 tgtgatagca atgatgttct atctattatg ggacaacaaa taccaagagt atttaagaac
      601 aagatgttat atgattatgt ttttaaaaat gaaaaaagta aaaatgattt tctaaaaatg
      661 gctgaatcat ggctaccaca gagtgaacca atagtaataa ataatgatga tgacgcattg
      721 aatgctgctg cttatttttc tgtaaaaaaa gcgaaaataa aaacagtaaa cgatactgat
      781 tttaaagagt ataataaggt ttatattctt gggcacggta gtcctggttc tcatcaatta
      841 ggccttggtt cggaacttat tgatgtacaa acaatcattt caagaatgaa agactgtggt
      901 attctaaatg tgaaagatat ccgttttact tcatgcggct ccgctgataa agtggctcct
      961 aaaaatttta acaatgcccc tgctgaaagt ctttcttgta tccttaactc tctgcctttt
     1021 tttaaggaaa aagaatcttt gctagagcag ataaaaaaac accttgaaaa cgatgagtca
     1081 ttgagtgatg gtctaaaaat atccggctat catggatatg gagttcacta tggtcaagag
     1141 ctttttccct actcacatta tcgttcaact tcaattcctg ctgatccgga gcatacagta
     1201 aaaagaagct ctcagaaaaa gacttttatt attaataaag aactggatta gtataaaatt
     1261 tttaacctat agttaattgt ttgcatttaa gatgaagtta tttttttctt tagtagaaaa
     1321 gtgcttccct atgagggaaa atcacaaatc atcataatac agagacaaaa cgatacgaac
     1381 aaatagataa aaaacatcat tcttttacta cattattttt cgtgaatatg aaaaataatg
     1441 ttattacttt aatataagac tattttttgt ttttccatca ctctgttcaa atttttccgc
     1501 atgacttgtg ttttttgtaa cacagctcgt tttttacagc tgaccaaaat catcaattaa
     1561 ttatgctaag gaaataaatt atgaaaacca aaaactttct tcttttttgt attgctacaa
     1621 atatgatttt tatcccctca gcaaatgctc tgaaggcaga aggttttctc actcaacaaa
     1681 cttcaccaga cagtttgtca atacttccgc cgcctccggc agaggattca gtagtatttc
     1741 aggctgacaa agctcattat gaattcggcc gctcgctccg ggatgctaat cgtgtacgtc
     1801 tcgctagcga agatgcatac tacgagaatt ttggtcttgc attttcagat gcttatggca
     1861 tggatatttc aagggaaaat accccaatct tatatcagtt gttaacacaa gtactacagg
     1921 atagccatga ttacgccgtg cgtaacgcca aagaatatta taaaagagtt cgtccattcg
     1981 ttatttataa agacgcaacc tgtacacctg ataaagatga gaacatggct atcactggct
     2041 cttatccctc tggtcatgca tcctttggtt gggcagtagc actgatactt gcggagatta
     2101 atcctcaacg taaagcggaa atacttcgac gtggatatga gtttggagaa agtcgggtca
     2161 tctgcggtgc gcattggcaa agcgatgtag aggctgggcg tttaatggga gcatcggttg
     2221 ttgcagtact tcataataca cctgaattta ccaaaagcct tagcgaagcc aaaaaagagt
     2281 ttgaagaatt aaatactcct accaatgaac tgaccccata aagctggaca gcctgtatca
     2341 ggctatggag ggcccataga caaatctacc ctatatgagc ataggaggag tctatgggca
     2401 caccacgttt tacccctgaa tttaagggat tactggaaag gctgggacat atccctccgg
     2461 cagaagcaga aaaagcttat tatgctgcca tcggaaacga tgatctggca acctgagttc
     2521 acagataaaa cattctctag gaaactcggg gcggttccgt tcaccacatg caatgtggtg
     2581 ttgcagggga acggtctgca ccatccccta tgtcgatcaa tataacagaa atgacaactt
     2641 cagattcagg gcacaaccta aatatatttt aggtcacctc tcaaatcgtt tgcctgatac
     2701 cgctccattt tttaataaaa aatcaatcat ttttgaatct ttgcttttca ttgcattgtc
     2761 aagcatagtg tccccactat ttgctttttg aaattttttg tttacatcaa ccaatccatt
     2821 attgataaaa tattctagca
//
LOCUS       DAJVUY010000276         2792 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.283, whole genome shotgun sequence.
ACCESSION   DAJVUY010000276 DAJVUY010000000
VERSION     DAJVUY010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.283"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..812)
                     /gene="curA"
                     /locus_tag="OQQ72_004164"
     CDS             complement(<1..812)
                     /gene="curA"
                     /locus_tag="OQQ72_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HCS2013684.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMAT"
     gene            993..1511
                     /gene="mddA"
                     /locus_tag="OQQ72_004165"
     CDS             993..1511
                     /gene="mddA"
                     /locus_tag="OQQ72_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HCS2013685.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            1508..1957
                     /locus_tag="OQQ72_004166"
     CDS             1508..1957
                     /locus_tag="OQQ72_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS2013686.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF"
     gene            complement(1958..2191)
                     /locus_tag="OQQ72_004167"
     CDS             complement(1958..2191)
                     /locus_tag="OQQ72_004167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HCS2013687.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2277..2450)
                     /gene="ortT"
                     /locus_tag="OQQ72_004168"
     CDS             complement(2277..2450)
                     /gene="ortT"
                     /locus_tag="OQQ72_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orphan toxin OrtT"
                     /protein_id="HCS2013688.1"
                     /translation="MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATW
                     PMSFPVALLFSLF"
     gene            2645..2740
                     /gene="yncL"
                     /locus_tag="OQQ72_004169"
     CDS             2645..2740
                     /gene="yncL"
                     /locus_tag="OQQ72_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HCS2013689.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          669 a          715 c          681 g          727 t
ORIGIN      
        1 gttgccatca acaggggtaa acgatccgga ccgggtggta gctctgtagc gttatagctg
       61 ctcactaagc cacaaacggg aatgcgcgca gatgtattaa gtaatggtag cactgcatca
      121 aataccttac cgcccacgtt ttcataatag atatcaatac cttttgggca cgctttcacc
      181 agttgttcgg caaaatcacc cgcgtggtga tcaagacaaa catcgaagcc cagcacctcg
      241 atagcatggc ggcatttttc cgcgccaccg gcccccccca ccaccctgca acctttaagt
      301 ttgccgattt gccccaccgt tgctcccaca ggacctgtcg ccgcagctac caccaacgtt
      361 tcgccctctt taggctgacc gatatccagc agccccatat aagcggtaaa gcctggcatc
      421 cccagcacac ccagcgacca cgatggattt tgcggatgat cgccaagttt caccagatca
      481 tcaccactgg atatgtcata gtcctgccat ccactgtagc ccagcaccca gtcgccaggc
      541 tgataatcag gatgattcga ctccacaaca tggctcaccg tgccgccgac catcacgccg
      601 ccaatatcaa caggcggtga ataagatggc tcatcgctca tacgtccacg catatacggg
      661 tccagggaca aataaactgt gcgcagtaac acctgtcctt cacccggtgt ggcgacatca
      721 tcttcttcaa gacggaaatt ctccggaacc ggtgcgccat gtggacgcga ggccagaacc
      781 caacgtcgat tacgctgctt ttgttgcccc ataatgctct cctgtgcttt tggcatgaat
      841 ccatcaatag tagcaggctc acgggattgg ttttgtttgc agccgtcaca tcccctctgc
      901 aacacgcaat aatttcatcg aggaatccgt tgcttcgggc tgttttcgat agtattgata
      961 acatcatcat cattatttta tcgaggccag acatgtccat ccgttttgcc cgcaaagccg
     1021 attgtgctgc cattgcggaa atttataacc acgccgtgtt gtatacggcg gctatctgga
     1081 atgaccaaac ggttgatgca gataaccgca ttgcctggtt tgaagcgcgg accatagcag
     1141 gttatccggt gctggtaagt gaagaagatg gcgtagtgac gggatatgcc tcgtttggcg
     1201 actggcgtag tttcgatggt tttcgccata ccgtggaaca ttcggtttat gtccatcccg
     1261 atcatcaggg caaaggtctg gggcgtaaat tgttaagccg attgattgat gaagcgcggg
     1321 atagcgggaa gcatgtcatg gtcgccggga tcgaatcgca aaatcaggcc tcgctgcatc
     1381 tgcaccattc gctgggattt gtcgtcaccg cacaaatgcc gcaggtgggc actaaatttg
     1441 ggcgctggct ggatctgaca tttatgcagt tgcaactcga cgaacgcact gaaccggacg
     1501 cgattggatg aatcagtcgc tcacccttgc ttttttgatt gccgccggaa ttggtctggt
     1561 agtccagaac acgctgatgg tgcgcatcac ccagacctcc tctaccattc tcatcgccat
     1621 gttgctgaac tcactggtgg ggattgtgct ctttgtttct attttatggt ttaaacaagg
     1681 catggcgggg tttggcgaac tggtgtccag cgtgcgctgg tggacactta tacccggctt
     1741 gctgggatcg ttttttgtct tcgccagtat cagcggatat cagaatgtgg gagcggcgac
     1801 aactattgca gtactggtcg ccagccagct aattggcggt ctgatgctgg atatcttccg
     1861 cagtcatggc gtaccactac gggcgttgtt cggcccaatt tgtggcgcaa ttttacttgt
     1921 ggttggcgcc tggttggtag ccagacgctc attttaatca gaggatggtg ccgcctttgg
     1981 ttaactgttc gtggcgcgct tccatatctt ctttatgctt gcgaccgtga tgagcaatag
     2041 cggtgcgcaa acgctgctgc tgggtgtagc gatcttcccg acttaactcc gcgtcatcgc
     2101 tcagggcgat taataattcg ttcatatggg caatgacgct ctcttcaatc gcggcatcca
     2161 cgcgcgcgat gacttcatcc agatgcgaca tactttctcc ttaaccactt gtgaaattta
     2221 tcgattcatc caaatgatat aagtctgcgt ggtgccgtca agccagtgag taagatttaa
     2281 aacagtgaaa acaacagcgc caccgggaaa ctcatcggcc atgttgcccc caccagaaag
     2341 gcgcttaaga aacggatgcg tttcttatcg tgagaaagaa accaggtgat aagaaatgcg
     2401 attgctgcca taaccgcata aaaaacaagc atatgttgat agagagacat gtacgggcgt
     2461 ccagccagat gaataaaacg cgcgcaaata tgcgtcattt tttgacgtgc atcaagtttt
     2521 ttcaccagtt tgagaaaaaa tcatcaaaca gcaacttgcc cttatccatc ttcagaatga
     2581 gtattattgc ggattttctt aacccgtact atacacatag gggcaatgat aaaaggtggc
     2641 aaaaatgaat gtttccagta gaactgtagt actgataaat gtctttgctg ctgttggttt
     2701 gtttactctt atctctatga gatttggctg gtttatttga tgtagtgatt ttgcacgcag
     2761 cacgtactgt cagagaaatc aactctctga ca
//
LOCUS       DAJVUY010000277         2776 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.284, whole genome shotgun sequence.
ACCESSION   DAJVUY010000277 DAJVUY010000000
VERSION     DAJVUY010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.284"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(924..1595)
                     /gene="queE"
                     /locus_tag="OQQ72_004170"
     CDS             complement(924..1595)
                     /gene="queE"
                     /locus_tag="OQQ72_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCS2013690.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            1734..1874
                     /locus_tag="OQQ72_004171"
     CDS             1734..1874
                     /locus_tag="OQQ72_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013691.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1888..2760
                     /locus_tag="OQQ72_004172"
                     /pseudo
     CDS             1888..2760
                     /locus_tag="OQQ72_004172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
BASE COUNT          855 a          568 c          515 g          838 t
ORIGIN      
        1 tttaactagt tcggtttatc cctgttttta caaggaatat taactacact cgatgtcttt
       61 agaataaaag acaatacgaa tcgcacttta tcaattttca cttaaagtat gaactggata
      121 tctttattca taagaactat tcatcaacag cgtatagagg cggttatgta aaaccactca
      181 ttagcctcaa aacaaagaca aacttccaga tttattactt aaccaatgaa taacaagctt
      241 aaaaaatata ctgttattct aaagaaaaaa ttaacaggca ttaattcaat attaaaaaaa
      301 taatagatta aaatttctta acgatttaag aatcatacaa ataacacttt gattaaattt
      361 aattttttgt atcgataatt gtgaacctct ctggcatgga gaactatttt gaacatgagg
      421 tgttacgtgg atatgttgct tattacaagt actgctaata taaaaacttg agaaagagat
      481 aacgggttat atggtggttt atccccgctg gcgcgggaaa ctcccagctc ttgcccgcct
      541 caaagggttg taactcggtt tatccccgct ggcgcgggga actctgtaaa cataacctat
      601 tattaattaa tgatttttta agccagtaac aatctaccaa ctttacagta tcacacaaac
      661 aacacatcca ttatgttaaa gagtacttaa ttcattgatt aaaaaggtaa atatttaaaa
      721 taactctata caaattaaaa tctaccaaac tttaccgcaa taattttcac tccagcgaaa
      781 aattaatgcc acagaatttg tagataatgc taatgattag ccctggatgg gtaaaatgga
      841 ggagttttca gaggcgacaa acaatataaa tgagtagaag tctttacagg ttccacccat
      901 ttataacgct tataaatgtt taatcaggca atatttagat atttatgtgt ttgcatcgac
      961 aaacgccaat tacgcgcaat gcaggtttca atgcacaaac gtgtggcatc atccttttgg
     1021 ctaatcggct gcagtgcaat gactcgcggt ttatcatcgg tcagcgttgc caatagttca
     1081 tcgagtgctt caatatcgcg tacgcgcccc actggatgct tgatttcgtt ggctcgctcc
     1141 agtgcctgtg acaacacgtc atagccgccg cgcatgttca gctttggcga tacggtaacc
     1201 caggtattcg gtgtgcagcg tacttcatga gttccactgg tttcgatctg gcagctaaaa
     1261 ccgttctttt cgagcaggtc agtcagtggc agcaaatcat gaatgcaagg ctcaccaccc
     1321 gtaatcacca catgccgcgc ggtatatccc tgccgaccaa tgacagccag caaatcttca
     1381 ctgctcgccg ccccccactt atcactctct ttggtcttcg ccagaatgct gaaaagggag
     1441 acttcccgat cctcaagctt ttcccaggtg tgtttggtgt cgcaccaggc acagccaacc
     1501 gggcatccct gtaaacgaat aaaaatggcg gggacgccgg taaagtaacc ctcaccttgc
     1561 agggtctgga acatctcgtt aatcgggtac tgcatagcat tctctgtgaa gtggataatt
     1621 gttaattatt gcagatcctg ccgcaacaat catgccttat taacattctg ttacatgcag
     1681 atttaaagaa aaatgcgaaa catatcgtta ataattaaag ggagtaacgt attatgtcag
     1741 aagaaaataa agaaaatgga tttaatcatg tcaaaacatt caccaaaatt atatttattt
     1801 tttctgtatt agtttttaat gataacgagt ctaaaattac cgatgccgcc gtcaatttat
     1861 ttatccagat ttaatgagaa atttataatg cgctatttca tactaatgtt cactttcgta
     1921 tgttcctttg ttgcagccca accaactatt gtcccacaat tacagtaaca agttacggat
     1981 cttacgagta gcttaaactc acaagaaaag aaagaactga cgcacaagtt agaatctatt
     2041 ttcaataata cccaagtgca aattgctgta ttaattgttc ccacaaccaa agacgagaca
     2101 attgaacaat atgctacaag agtttttgac aattggcgtt taggagatgc caaacgtaat
     2161 gatgggatac tgatcattgt tgcctggtca gatcgtactg tccgcatcca ggtaggttat
     2221 gggctggaag aaaaggtaac cgatgctctg gctggagata tcatccgtag caacatgata
     2281 cccgcattta aacaacaaaa atttgctcag ggattagagc tagctataaa cgctttgaat
     2341 aaccaactca cttcacaaca ccaatatccg actaatcctt cagaaagtga atcagcgtct
     2401 tccagtgatc attattactt tgctattttt tgggtatttg cagtgatgtt cttccctttc
     2461 tggttttttc atcaaggcag taatttttgt cgcgcatgta aaagtggagt ctgtatttca
     2521 gcaatctatc ttttagattt attcctgttc tccgataaaa ttttttccat tgctgtattt
     2581 tccttctttt ttactttcac catatttatg gtctttacct gtttatgtgt acttcagaaa
     2641 agagcatcag gtaaaagtta tcattcagac aacagcggtt ccggtggagg ctcaagtggc
     2701 ggcggattta gcggcggtgg cggttcttct ggaggtggcg gcgcatccgg ccgctggtaa
     2761 ctcaaccata aaaaat
//
LOCUS       DAJVUY010000278         2740 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.285, whole genome shotgun sequence.
ACCESSION   DAJVUY010000278 DAJVUY010000000
VERSION     DAJVUY010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.285"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..172
                     /locus_tag="OQQ72_004173"
     CDS             <1..172
                     /locus_tag="OQQ72_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="acts in anaerobic beta-oxidation of fatty acids;
                     possible ligase/synthase involved in anaerobic growth on
                     fatty acids; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cyclohexanecarboxylate-CoA ligase"
                     /protein_id="HCS2013692.1"
                     /translation="EVVAFFSHKRVAKYKYPEHIVVIEKLPRTASGKIQKFLLRKDIM
                     RRLTQDVCEEIE"
     gene            complement(229..2607)
                     /gene="ppsA"
                     /locus_tag="OQQ72_004174"
     CDS             complement(229..2607)
                     /gene="ppsA"
                     /locus_tag="OQQ72_004174"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HCS2013693.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQP
                     ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNGRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL
                     VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV
                     TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVG
                     LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
BASE COUNT          654 a          761 c          682 g          643 t
ORIGIN      
        1 agaggtggtg gcttttttta gccataaacg ggtcgcaaaa tataaatatc ctgaacatat
       61 cgtggtaatc gaaaaactac cgcgcactgc ctcaggtaaa atacaaaagt ttttgttaag
      121 aaaagatatt atgcggcgat taacgcagga tgtctgtgaa gagattgaat aagtttcatc
      181 ttcggggatc acataaaccc ggcgacaaaa cgccgccggg tatttatttt atttcttcag
      241 ttcagccagg cttaaccagg tttgcaccac ggtgtccgga ttcagagaca ggctatcgat
      301 cccctcttcc atcaaccatg cggcaaaatc ttcgtggtcg gacggaccct gaccgcaaat
      361 cccgacatat ttgccctgtt tcttcgcggc acggatagcc atcgacagca atgctttcac
      421 cgcatcgttg cgctcatcga acagttcaga caccacgccg gagtcacgat ccagaccgag
      481 cgccaactgc gtcatgtcgt ttgagccaat tgagaagccg tcgaaatatt cgaggaactg
      541 ctcggccagc aaggcgttgg acgggatttc acacatcatg atgattttca gcccgttctc
      601 accacgcttc agcccctgac gcgccagttc ttcaaccacc gctttcgcct ggtctacggt
      661 acgcacgaac gggatcatga tctcaacgtt ggtcagcccc atgtcgttgc gcacacgttt
      721 cactgcttca cactccagcg cgaagcagtc gcggaagctg tcggaaacat agcggcccgc
      781 gccacggaag ccgagcatcg ggttctcttc atctggctcg taacgctcac caccgaccag
      841 gttggcatat tcgttcgatt taaaatcaga gagacggaca atgacgcgct tcggataaaa
      901 cgcggcaccc agcgtcgcga tcccttcagt cagacgacca acgtaaaatt cacgcggaga
      961 atcaaaacct ttcatcatct cgcggatttc gttttgcaac tgcggttcct gatcgtcaaa
     1021 ctcaagcagt gcgcgtgggt ggacgccaat catacggttg atgataaatt ccagacgcgc
     1081 aagtcccacg ccttcgttcg gcagacaggc gaagtcgaaa gctcgatccg ggttaccgac
     1141 gttcatcatc actttcaacg gcagatccgg catggtttct acgctggagc ttttcacgct
     1201 aaattccagc aactccgcat agacgtaacc ggtatcacct tcggcacaag aaacagtgac
     1261 gttctcaccg tctttcatcc gttctgttgc atcaccacag cccacgaccg ccggaatacc
     1321 cagttcacga gcgatgatcg ccgcgtgaca ggtacgaccg ccacggttgg tgactatggc
     1381 agatgctttc ttcatgatcg gttcccagtc cgggtcggtc atgtcagtga ccagcacgtc
     1441 accaggttcg atgcggttca tttcgctgat gtcatggatg actttcaccg gacccgcacc
     1501 gatgcgatga ccgatagcac ggccttcggc gataatctta ccctgtgaat gcagcgtata
     1561 acgctccatg acctgaccgc gtgagcgcac ggtttccgga cgcgcctgca caatgaacag
     1621 tttgccggtg tggccatctt tcgcccactc aatatccatc gggcgaccgt agtgtttctc
     1681 aatttgtacg gcctgttttg ccagttcctg cacttcttcg ttggtcagcg agaagatgtc
     1741 acgctgttcc tgcggtacgt cttcgatttt aacctgcttg ccgtgctcct gggtcggcgc
     1801 gtaaaccatg cggatttttt tcgaccccat ggtgcggcgc acgatagccg ggcgattcgc
     1861 cgccagtgtc ggtttatgca cgtaaaactc atccgggtta accgccccct gcacgaccat
     1921 ctcaccaagg ccccatgcgg aagtgataaa caccacctgg tcaaagccgg attcggtatc
     1981 aatggagaac atcacgccag aagatgcgag gtcggagcgc accatccgct gaacaccggc
     2041 ggagagcgcc acgccacggt gatcgtaacc ctggtgcaca cgataagaga tggcgcgacc
     2101 gttaaacaga gaagcaaata catgtttcac tgccacgaga acggcgtcaa acccctgaac
     2161 gttgaggaag gtttcctgct gaccggcaaa ggaagcgtcc ggcatatctt ctgcggtggc
     2221 ggaggagcgc accgcaaaag aggcgttttc gtcatcggcg gaaagctgag cataggcttc
     2281 gcggatggcg ttttccagct caggctggaa gggagtgtcg ataatccact ggcggatttg
     2341 cgcgcccgct ttcgcaagct gagtaacatc gtcaatatcc gttttatcca gcagttcata
     2401 aatgcgctgg tttacgccgc tttggtccag aaactggtta aacgcgtcgg cggttgtggc
     2461 gaaaccattc ggaacggaaa cgcccattcc ggaaaggtta gtaatcattt cacccaggga
     2521 ggcatttttg cccccaaccc tgtctacatc attcatgccg agttggttgt accaaagcac
     2581 cagcggtgac gagccattgt tggacatcga acaatccttt tgtgataaat gaacggtttg
     2641 agaaacacat ttctgcgcat ttatctttgc atatttaacc ggatgaaaaa aacggtgaat
     2701 cgttcaagca aatatatttt tttacttttt aagactgatc
//
LOCUS       DAJVUY010000279         2705 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.286, whole genome shotgun sequence.
ACCESSION   DAJVUY010000279 DAJVUY010000000
VERSION     DAJVUY010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.286"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..2657)
                     /locus_tag="OQQ72_004175"
     CDS             complement(<1..2657)
                     /locus_tag="OQQ72_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS2013694.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVEGPVDGLKS
                     VLLNSTPVLDSEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCL
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNAVEVNWIDPDNGWETATELVEDTQAIARYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISIGGRVLAVNSQTRTLTLD
                     REITLPSSGTTLISLVDGQGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL
                     RQRLFRCVSIRENDGGTYAITAVQHVPEKEAIVDNGAHFDGDQSGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVTADDGSERLVSTARTTETTYRFRQ
                     LALGRYMLTVRAVNAWGQLGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDP
                     TVQFEFWFSEKRITDIRKVETTARYLGTGLYWIAASINIKPGHDYYFYVRSVNTVGKS
                     AFVEAVGQPSDDASGYLDFFKGEIGKTHLAQELWTQIDNGQLAPDLAEIRTSIKDVSN
                     EITQTVNKKLEDQSAAIQQIQKVQVDTNN"
BASE COUNT          526 a          873 c          692 g          614 t
ORIGIN      
        1 ttattatttg tatcaacctg aaccttctgt atctgctgaa ttgccgcact ctggtcttcc
       61 agtttcttat tgacggtctg cgtgatttca ttgctgacat ccttaatgga cgtcctgatt
      121 tcagccaggt caggcgcaag ctgaccgtta tcaatctgcg tccacagctc ctgagccaga
      181 tgggttttcc ctatctcgcc tttgaaaaaa tccagataac cggatgcatc atcactcggc
      241 tgaccaacag cctccacgaa tgccgatttg ccaacggtgt tcacactgcg aacgtaaaaa
      301 taataatcat ggcccggttt gatattgata ctggcggcta tccagtacag ccccgtgcca
      361 agatagcgcg ctgtggtttc aaccttcctg atatcggtaa tccgcttttc cgaaaaccag
      421 aactcaaact gtaccgtcgg gtcataaacg gcaagatgcg gcgtggcggt tatctgaaaa
      481 tagcccggcg tcagctcaat ccgcgacggc gctgccggtg cggcaatccg gaacgatacc
      541 gacgccggat cgcccagctg tccccacgca tttaccgccc ggaccgtcaa catgtaacgc
      601 cccagcgcca gctgcctgaa gcggtatgtg gtttccgtcg tccgggccgt gctgaccagc
      661 cgctcactgc catcgtccgc tgtcacggtc aggcgaagca ggaagctcac gcccttcacc
      721 accttcggcg tgtcccagcg ggccagtacc tgatactccc cgctgtctgc ggtgacttcg
      781 gcagtcaggt gctgcaccgc tggcggcgtg acaccattca ccgtgccgct ctggtcgccg
      841 tcaaagtgcg ccccgttatc cacgatggct tctttttccg gtacatgctg cacggcggtg
      901 atggcatacg tgccgccatc gttctcacgg atactcacgc agcggaacag gcgctggcgc
      961 agcgtcggca gcttcagccc ccacacgctg tattcggcaa cgccgtcagg aacacggctc
     1021 actttcacct tcacgccgtc ggtgacggac tggacctcca cgctgaccgg attcccctgt
     1081 ccgtcaacca ggcttatcag cgtggtgccg gaggatggca gcgtgatttc acggtcgagc
     1141 gtcagtgtcc gcgtctggct gttcaccgcc agcacgcgcc cgccgatgct gataccggca
     1201 tagtcatcat cacagatttc aatgacatcg cccggtacat ggcgaagccc ttctgcaccc
     1261 acgctgaagt ccacggtctg cgtttccagc agctccgttt taatcagcca cagcccggcg
     1321 cggtgtgcct gcccccggct ggtacagcca aaggcatcca tcttcgtgac gttacgaccg
     1381 taacgggcaa tggcctgcgt atcttcaaca agctctgtcg ccgtctccca gccgttatcc
     1441 gggtcaatcc agttcacctc aacggcatta tggcggtcct tcagggcgct gaagctgtag
     1501 cggaacggcg cgccatcatc cggcatcacc acattactgc ggttataggt ccacacctta
     1561 tccgacggtc ggtcctgcac gaacgtcagc gtctgcccgt tccataccgg catacagcgc
     1621 atcgccgaac agaaatcact gagcacatcc cacgccttac gctgtgtggt caggtaagcg
     1681 ttacaggtga tgcgcggctc cgtgccacca aagccatccg gcactgactg gtcgcagtac
     1741 tggccgatga catacagcgc ccatttgtcc acatccgccg caccaagacg tttccccatg
     1801 ccgtagcgtg gatgggtcag catatcccac agacaccagg ccatgttatt gctgtatgct
     1861 ggcttaaacg ttccgtccca gataccgctg tattgccgag tctgcgggtt atagttcgac
     1921 ggcacctgca gaatacgccc gcgcagatga taattacggc tcacctgctg gctgccgaac
     1981 tgctccgaat ccacctgtac gccgaccagt gccgtgttcg ggtagcactg tttcacatcg
     2041 atgatttcgg tgtatgacga ccagagcgtt ttgttctgca gctggtctgt ggtgctgtcc
     2101 ggcgtcatcc tgcgcatccg gatattgaac gggcgcggcg gcaggttacc caccaccacc
     2161 gatgctagat actgtgaggt ggttttgcct ttaatggtga tgtctttttc cgtcacccag
     2221 ccaccattac gctgtatctg aaccagcagg cggacttccg acggattccg gtcccccttt
     2281 gaggtggttt ccaccagtgc ctgcacaccg aaggtaaagc gcagacggtc gatgtttgcc
     2341 gacgtgatgg tccgggtaat cggcgtgtcg tacttcactt ccgtacccag caccgtctcg
     2401 gagccggagg attcaaatcc ctccggcggt gtctgctcct gctcaccggc ccggaacacc
     2461 accgtgacgc cggatatatt ggtattcccc tcactgtcca gcaccggcgt actgttcagc
     2521 agcacgcttt ttaatccatc caccggacct tcaaccggcc cttcgctgat ggcatcgatc
     2581 acactcagca gctgcgtgga cttcaggttg tccttcgctt cgcgcggggt atgcccctta
     2641 ctgcttcctt tacccattcc tcacactcca taaacaacaa agccgcccaa aaggcggctc
     2701 atgag
//
LOCUS       DAJVUY010000280         2668 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.287, whole genome shotgun sequence.
ACCESSION   DAJVUY010000280 DAJVUY010000000
VERSION     DAJVUY010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.287"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            45..770
                     /locus_tag="OQQ72_004176"
     CDS             45..770
                     /locus_tag="OQQ72_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005112197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS2013695.1"
                     /translation="MKILNSNLITNISSTIRNHLLTSSKNIKTPPSPNMDVTSHRRLF
                     QKDGIGLSQTGKATQLVIMSHGGWKEISHPQTLFTRQKGDGWTVVPKNLRIDFYTKDN
                     DFTKGLSVLSEVNKRHTEAQKGLTPSLNISKDDLKVLANARNIPQSKLEEEMMSQAIY
                     RKEYATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKNIDIAFITDKNHKKHLSDIFKV
                     INESGVKYDVIHFGACRVNREEK"
     gene            complement(996..1319)
                     /locus_tag="OQQ72_004177"
     CDS             complement(996..1319)
                     /locus_tag="OQQ72_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nikA protein"
                     /protein_id="HCS2013696.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKNVNSLTDDRVLKEVMRLGALQKKLFIDGKRIGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            1592..1786
                     /locus_tag="OQQ72_004178"
     CDS             1592..1786
                     /locus_tag="OQQ72_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS2013697.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
BASE COUNT          863 a          657 c          563 g          585 t
ORIGIN      
        1 aaaaaaaaac aataaaaaac accgcaaaaa tggattgtta acaaatgaaa atactcaatt
       61 cgaatctcat aacaaacata tcatcaacaa taagaaatca ccttctaaca tcatccaaaa
      121 atataaaaac acccccatca ccaaacatgg acgtaacaag tcatcgtcgt ttattccaga
      181 aagacggaat aggattgagc caaacaggaa aagcaacaca acttgtcatt atgtcgcatg
      241 gtggatggaa agagatctcc catccacaaa cactattcac gcgtcaaaaa ggcgatggat
      301 ggactgtagt ccccaaaaac ctaagaattg atttttatac aaaagacaac gacttcacaa
      361 agggactaag cgttctttca gaggtaaaca aacgccatac tgaagctcaa aaagggttaa
      421 caccatcact aaacataagc aaagatgacc taaaagttct agcgaacgcg cgcaatatac
      481 ctcaatcaaa attagaagaa gaaatgatgt cacaagccat atatagaaaa gaatacgcaa
      541 caagtaatga gaagataaaa aactatgctc tatattacca tgaacaagcc caaaatatta
      601 tacaaagaca tcaagatggc ttaggaaaca aaaatattga tatagcattt ataactgata
      661 aaaatcataa gaagcacctt tctgacatat ttaaagtaat aaatgaatca ggagtaaaat
      721 atgatgtaat tcactttggc gcttgccgag taaatagaga ggagaaataa tcatcattta
      781 ccataatccc ttaattgtac gcaccactga aacgcgctga acgcgattct gacgcagaca
      841 ccacaaaaat agatgtttta ccccggaaaa acaggaagga tgcgtcagga tcgttttcag
      901 ctcgctgcat agctatgcat gaaagcgaat ggagatcact ttgggagctt accgtgttca
      961 taccgtctgt tttcaacagt tttctccccg ggaagctaat ctgccataag cctggataac
     1021 agggcacggt gatactccgt aatagcgatc agcacctccg catactccct gtccccgata
     1081 cgcttgccgt cgataaagag ttttttctgt aacgccccca gtctcataac ttctttcagt
     1141 acccgatcat cagtcagtga gttaacgttc ttaccgagag ctgccgcccg taaaaaaccg
     1201 gaaacggtct tgccgcattc agcagccctt tttctgattt cctggtcttc ttctgccgtc
     1261 agacgaacag ggcgactgat agcccgcctg cgcgtattac ttccacttcg ttttgtcata
     1321 aaacatggct ccgtatctga catgggtgtc ggggcaaagc cctgaccagg gcaattgtaa
     1381 tagcgtgcat gtatgcgcgg tataacaatt gcacatcctg tcctgtcagc aagctcgaat
     1441 taccgacaaa ggcacggcag ttttttggca gttacagtgt tgtctgacag aaatacccgt
     1501 caaaaagcca ggcggcagca aaacagtcga aaagtggtac gcgatataat cacataacgc
     1561 agatgacaga cagaacggag aaaacgaaaa gatgaacaag cagcagcaag ccgtactcaa
     1621 catggcggga ttcataaaaa gccagagcct gacgctgctc gaaaaactgg acgcactcga
     1681 tgctgacgag caggccacca tgtgtgagaa actacacgaa ctcgcagaag aactccagaa
     1741 cagcatacag acacgctttg aagtagaaaa tagcacagag agataacgct caggacagga
     1801 tgtcgaacgg cacaacagag cgtaaggaga aaatgtcaca taaggcgctc ttccgcttcc
     1861 tcgctcactg actcgctacg ctcggtcgtt cgactgcggc gagcggtatc agctcactca
     1921 aaggcggtaa tgcggttatc cacagaatca ggggataacg ccggaaagaa catgtgagca
     1981 aaaagccgaa ggcagggaca aaggccgcgc aggtggcgtt tttccatagg ctccgccccc
     2041 ctgacgagca tcacaaaaat cgacgctcaa gtcagaggtg gcgaaacccg acaggactat
     2101 aaagatacca ggcgtttccc cctggaagct ccctcgtgcg ctctcctgtt ccgaccctgc
     2161 cgcttaccgg atacctgtcc gcctttctcc cttcgggaag cgtggcgctt tctcatagct
     2221 cacgctgttg gtatctcagt tcggtgtagg tcgttcgctc caagctgggc tgtgtgcacg
     2281 aaccccccgt tcagcccgac cgctgcgcct tatccggtaa ctatcgtctt gagtccaacc
     2341 cggtaagaca cgaattatcg ccactggcag cagccactga taaccgaatt agaggagtaa
     2401 gacttgaagt catgcgcctg ttaaggctaa actgaaagaa caagttttgg tgactgcgct
     2461 cctccaagcc agttacctcg gctcaaagag ttggtatctc tgagaacctt cgaaaaaccg
     2521 ccttgcaggg cggttttttc gtttacaggc agtagattac gcgcagaaaa aaaggatctc
     2581 aagaagaacc tttaattttt tttcacactt ggtatcctac tttaacccat aaaataaaca
     2641 cttacaccga cacgccctta aacaaaag
//
LOCUS       DAJVUY010000281         2628 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.288, whole genome shotgun sequence.
ACCESSION   DAJVUY010000281 DAJVUY010000000
VERSION     DAJVUY010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.288"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..212)
                     /locus_tag="OQQ72_004179"
     CDS             complement(<1..212)
                     /locus_tag="OQQ72_004179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013698.1"
                     /translation="MIRFRLYIPPVILGFVIVPLLVWPTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVCISLQELQLELMVEYALFF"
     gene            complement(215..982)
                     /locus_tag="OQQ72_004180"
     CDS             complement(215..982)
                     /locus_tag="OQQ72_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013699.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESLGK"
     gene            complement(985..1695)
                     /locus_tag="OQQ72_004181"
     CDS             complement(985..1695)
                     /locus_tag="OQQ72_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013700.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAELKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ANARFVYQPFTRDQRARG"
     gene            complement(1711..2628)
                     /locus_tag="OQQ72_004182"
                     /pseudo
     CDS             complement(1711..2628)
                     /locus_tag="OQQ72_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
BASE COUNT          720 a          618 c          580 g          710 t
ORIGIN      
        1 ctgaaaaaaa gtgcatattc aaccattaac tcaagttgta attcctgaag agaaatacac
       61 acaaccagga gcggaaagga gaatattatt tctgccagaa aagttaacgt gaatataagt
      121 acggctaaga caataaccgt cggccatacc aataatggca cgataacaaa accgagaatt
      181 acagggggaa tataaagccg gaatctaatc atttttattt tcctagtgat tcggatgatg
      241 cgtcatacat cgcgcataaa cactcatcaa ttatccagtc atcttcccag acctgatatt
      301 ctgtcattgg ttcgggctgt tttagcgggt tctcaatcgc ttgccgcgct ctttctttca
      361 gtaaaggatg attatttcta gcccaggcat tgatttgggt ggtaatgacg ttatcgatat
      421 cgtcctggtt atctctgata taatcctcac aatatctgtt caataaacag gcaagagaaa
      481 cggtcgacca aaagccggga actgaattaa tggcatccag caatggcgca agagcgatat
      541 cggcacggaa aaacatttcc agcatatact gtaattcgac agcttcatcg ccggataccc
      601 aatcagtcat atactggcag gcaaatcgct gtaaaattgc ccgttcatcc gcacgccagt
      661 tttctttgtt ggcaaggttg atacggcgca gagaaaaaac tacgtgaata ttgtcaaaat
      721 gcccctgtgc aacaaattcc agtaaacgcg gcagaaaata gcggacctca tcgctatttt
      781 gcggatcagg ccctgggcta ctattccagg cattgattaa ggaatacggg atcgctcgta
      841 acgatgtact ccgtaatgcc ttttgttcct gctgactcag gcaatattca caacaaacca
      901 caaatttctg cggcacccga taacgacgaa aggtgtgata aatctgctca attaatgcct
      961 gcatggcggg gctgggttgc atagttaccc cctcgcccgc tgatcgcgtg taaacggttg
     1021 atagacaaaa cgagcattcg ccgcgttcag gcgaataagg gcgctacgcg aaagggaaaa
     1081 gctggggcga atgcaactat tgcagtctcg acagctttcc tctgcgcaat tttccactga
     1141 gtaatgacgc gtgtagagtt tcagttcggc ctgcttatcg cgaaatccgc gtaaactgtt
     1201 attgttatga aatttccagg catctttaaa gacctgaaag atatagacat cctcaatcca
     1261 ggagtcacat tttttaagcg ggcgctttgc tattatcacc cgctcatccg gatttagcat
     1321 cgccgtaaat tgtacggtga cgtcatttgt cgtgttcagg tcacattgaa catctggtac
     1381 atcactgata taggggtcaa atccaaaatc agcaccacag gcacaaagac ggctaatggt
     1441 ggcggtatcg agggaaaatc ccggccatac tttgctggag gttaagccaa tatttaatgt
     1501 gacatcatat cgaagcaatc cctcaagacc gtcagcaccg acgaactttt ccccttcatc
     1561 cagggcctgg ttaataagtt gctgaacaat gccttcatcc cagtatgccg atttgcagtt
     1621 ggcaatcgta atatccacgc ctgtgaaggg atcagtaccg gcaaggcttg caaataatgt
     1681 attaactaat tccattttta ttatccagct ttaaggtagc gtcttataca tcgggacata
     1741 acctacatct tccaccaaac tctgtccctg cggcgttaaa aaccactcca acaatttttg
     1801 tgtctctgac gtcgtatttt cccgcgttac cataaaggca tcgatgatat agggatattt
     1861 gccgttgcga atgttttcgg cagtcggtgc aataccgtta atcgctagca gttttatatt
     1921 tttatcggcg ttcatttgtg ttgcgtaata acggaaggtg taacctattg cgttgtttgt
     1981 attacggtat tcggcaacga ctttaatcat tccctccatc atacttgcca cttctgtttc
     2041 ctgcggcgag atcatgcgga catttttcat gacctgggat tgcatcaccg tctggctacc
     2101 agagtcttcc gggcgttgct aggtctggat ctcctgatcg ttaccgccaa cagtacgcca
     2161 gttggtaatt gcaccactga agatgtcacg cacctgttgt tcagtcaggg aattaaccgg
     2221 attatccgca ttgacgatga aaacaaacgc ttcacgggca aaaggcgtgt acagcaaagt
     2281 aatgcccgat tcctcagcgc gttttttctg cccaccggaa ggttgcgcca caaaaataat
     2341 atcagcatca cctttaacaa tcctgttata cgcatcgggg gtacgagagc tctccagata
     2401 ttccctggtg tgaaaatctt ccggtataac gctcaaagca taaaatgcag aggcataaat
     2461 tgggtacgcc gccgtagcac catcgagtcg cggccagttt tgcgtaaact gaatttgcgg
     2521 tttaccacgc agtggtgtca gttgattatt gagtttatcg ggtcgccagg cccaggtatc
     2581 aatattttcg cgcacaccga cgccgggatt gagctgttta tataaata
//
LOCUS       DAJVUY010000282         2578 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.289, whole genome shotgun sequence.
ACCESSION   DAJVUY010000282 DAJVUY010000000
VERSION     DAJVUY010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.289"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..2269
                     /locus_tag="OQQ72_004183"
     CDS             <1..2269
                     /locus_tag="OQQ72_004183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS2013701.1"
                     /translation="KKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEK
                     DDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFT
                     NYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSYLQ
                     RDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSA
                     IVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPM
                     MQRPRHLKYSATAGRYRVDANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALG
                     IGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYT
                     NDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNI
                     SVGVSGQQWGIGYSLNYQYSRYTDENNDRALSLNLSIPLERWLPRSRVSYQMTSQKDR
                     PTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSS
                     QYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVIPY
                     LTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNG
                     KPLPFGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFNTPD
                     SEPTTSVLQGTAQCH"
     gene            2280..>2578
                     /locus_tag="OQQ72_004184"
     CDS             2280..>2578
                     /locus_tag="OQQ72_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2013702.1"
                     /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT
                     VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKL"
BASE COUNT          718 a          623 c          603 g          634 t
ORIGIN      
        1 taaaaagaag gtttcacaga aaaaaattac atttaccgcc aatgcagagc aacttctgca
       61 gccacagttt acggtagaac aactacgtga gctgggtatt aaggtggatg aaatcccggc
      121 gctggctgaa aaagatgacg atagcgtgat caactcgctt gaacaaatca ttcccggtac
      181 agctgctgaa tttgatttca atcatcagcg acttaatttg agcattcccc aaattgcact
      241 gtaccgtgat gcaagaggtt acgtctcccc ttctcgttgg gacgatggta taccaacgct
      301 gtttaccaac tactcgttta caggttctga taaccgttac cgccagggca atcgtagcca
      361 acgacagtac ctgaatatgc aaaatggtgc taattttggc ccctggcgat tacgtaacta
      421 ttctacgtgg acacgcaacg atcaggcgtc aagctggaac actatcagta gttatttaca
      481 acgtgatatc aaggcgttga agtctcagtt gcttctggga gaaagcgcca ccagcggcag
      541 tattttttcc agctacacct ttactggcgt gcaactcgct tccgacgata atatgttgcc
      601 aaacagccag cgcggatttg ccccaacggt acgcggtatc gcaaacagta gtgcaatcgt
      661 gactatcagg caaaatggtt atgtgatcta tcaaagcaac gtgccagcgg gtgcctttga
      721 aattaacgat ctctacccct cttccaacag cggcgattta gaagtcacga ttgaagaaag
      781 tgacggtaca caacgtcgct ttatccagcc ttattcttca ttacccatga tgcagcgacc
      841 taggcatcta aaatatagcg cgaccgctgg acgctatcgc gttgatgcaa acagtgatag
      901 caaggaaccc gaatttgctg aagccacggc aatatatggt ttgaataata cttttacgct
      961 gtatggcggc ctgctcggtt ctgaagatta ttatgcgctg gggatcggta tcggcggcac
     1021 acttggcgca ctgggcgcgt tgtcgatgga tatcaacaga gctgacaccc aattcgataa
     1081 ccagcactct tttcatggct atcaatggcg tacgcagtac atcaaagata tcccggaaac
     1141 caacaccaat atcgctgtta gctactatcg ctataccaac gatggctatt ttagttttga
     1201 tgaagccaat acccgcaatt gggactataa cagtcgccaa aaaagtgaaa ttcaattcaa
     1261 catcagccag acaatatttg atggggtaag tctgtatgcc tccggttcgc agcaagacta
     1321 ttggggcaat aacgagaaaa acaggaatat ctctgttggg gtttccggcc agcaatgggg
     1381 aattggttac agcctgaatt atcaatacag ccgctacact gatgaaaata atgaccgtgc
     1441 actctctttg aatctcagta ttccgttaga acgctggtta ccgcgtagcc gggtttccta
     1501 tcagatgacc agccagaaag atcgcccaac ccaacatgaa atgcgtcttg atggctcact
     1561 gctggatgat ggtcgcctga gctatagcct ggaacaaagt ctggatgacg ataacaacca
     1621 taacagtagc ctgaacgcca gttaccgttc accttatgga accttcagtg ccggatacag
     1681 ttacggtaat gacagcagcc aatacaatta cggcgttacc ggcggcgtgg ttatccatcc
     1741 tcatggcgtg acgctctcgc aatatctggg caacgctttt gcgcttatcg atgctaacgg
     1801 ggcttctggc gtgaggatac aaaactatcc ggggattgct actgatccct ttggctatgc
     1861 agtgattcct tatctcacga cttatcagga aaaccgtctc tcggtagata ctacgcagct
     1921 gcccgataac gtcgatcttg aacaaacaac acagtttgtg gtgcccaaca gaggtgcaat
     1981 ggtagcggcg cgtttcaacg ccaatatcgg ttatcgcgta cttgttacag tcagcgatcg
     2041 caacggtaaa ccgttgccct ttggcgctct tgccagcaac gatgatacgg ggcaacaaag
     2101 tatcgtcgat gagggcggca tactatatct ctctgggata tcgagtaaat cacaaagctg
     2161 gactgtacgc tggggaaatc aggcagatca acaatgtcag tttgctttta atacaccgga
     2221 ttcagaacca acaacctctg tattacaagg cacagcgcag tgccattaag gataaaaaaa
     2281 tgaaaagagc gcctcttata acaggacttt tgttgatatc cacatcctgc gcttatgcct
     2341 cctcaggagg gtgtggagcc gacagcacta gcggtgcgac aaattacagc agtgtggttg
     2401 atgatgttac ggtgaaccag acagataacg tgacaggacg ggagtttacc tctgcaacgc
     2461 taagtagcac taactggcaa tacgcctgtt cctgctctgc gggtaaggca gttaaacttg
     2521 tctatatggt cagccccgta cttaccacca ctggacatca gacaggatat tacaaact
//
LOCUS       DAJVUY010000283         2436 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.290, whole genome shotgun sequence.
ACCESSION   DAJVUY010000283 DAJVUY010000000
VERSION     DAJVUY010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.290"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..152
                     /locus_tag="OQQ72_004185"
     CDS             <1..152
                     /locus_tag="OQQ72_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013703.1"
                     /translation="VIDMPAGHGHMTLEFSVSAWLVNNWYPTASISDLLVVVMKKATT
                     GITIS"
     gene            220..819
                     /locus_tag="OQQ72_004186"
     CDS             220..819
                     /locus_tag="OQQ72_004186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS2013704.1"
                     /translation="MRKLCAVILSAVVWLVAAGMPASAAEHQSTLSAGYLQTHTDMPG
                     SDDLNGINVKYRYEFTDTLGLVTSFSYANAKDEQKTHYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVTYSRVSTFSGDYLRVTDSKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTNSFIVGVGYKF"
     gene            884..>2436
                     /locus_tag="OQQ72_004187"
     CDS             884..>2436
                     /locus_tag="OQQ72_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS2013705.1"
                     /translation="MAVLISGVLKDGAGKPIQNCTIQLKARRNSTTVVVNTVASENPD
                     EAGRYTMDVEYGQYSVSLLVEGFPPSHAGIITVYEDSKPGTLNDFLGAMTEDDVRPEA
                     LRRFELMVEEVARNASAVAQNTAAAKKSASDARTSAREAATHATDAAGSARAASTSAG
                     QAASSAQSASSSAGAASTKASEASKSAAAAESSKSAAATSASAAKTSETNAAASQQSA
                     ATSASTATTKASEAATSARDASASKEAAKSSETNAASSASSAASSATAAANSAKAAKT
                     SETNARSSETAAGQSASAAADSKTAAALSASAASTSAGQASASATAAGKSAESAASSA
                     STATTKAGEAAVQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASS
                     ASASKDEATRQASAAKGSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAE
                     DIASAVALEDASTTKKGIVQLSSATNSTSESLAATPKAVKAAYELANGKYTAQDATTA
                     QKGIVQLSNA"
BASE COUNT          622 a          643 c          735 g          436 t
ORIGIN      
        1 gcgttattga tatgcctgcc ggtcacggtc acatgacact ggagttttcg gtgtcagcat
       61 ggctggtaaa taactggtat cccacagcaa gtatcagcga tttgctggtt gtggtgatga
      121 agaaagccac tacaggcatc acgattagct gaattttata acccagatac gggcaccaga
      181 aatggtgcct tttttattgc agaaaagcga gaggtaatta tgcgtaaatt atgtgctgtt
      241 attctgtccg cagtagtctg gctggttgcc gctggtatgc cagcgagcgc agcagagcat
      301 cagtccacac taagcgccgg gtatcttcag acccatactg atatgccagg cagcgatgat
      361 ctgaacggga ttaacgtgaa ataccgttat gagtttacgg acacgctggg gctggtgacg
      421 tcattcagtt atgccaatgc caaagatgag caaaaaacgc attacagcga tacccgctgg
      481 catgaagatt ccgtgcgtaa ccgctggttc agcgtgatgg cggggccgtc tgtgcgcgtg
      541 aatgaatggt tcagcgcgta tgcgatggcg ggtgtgactt acagtcgtgt gtcgactttt
      601 tccggggatt atctccgtgt aactgacagc aaggggaaaa cgcacgatgt gctgaccgga
      661 agtgatgacg gtcgccacag caacacgtct ctggcgtggg gggctggcgt gcagtttaac
      721 ccgaccgaat ccgtggccat tgatattgct tatgaaggct ccggcagtgg tgactggcgt
      781 accaacagtt tcatcgttgg tgtcggctat aaattctgat tagccaggta acacagtgtt
      841 atgacagccc gccggttcag gcgggctttt ttgtgggggg aatatggcag tactgatttc
      901 aggtgtactg aaagatggtg caggtaagcc gatacaaaac tgcaccattc agctaaaggc
      961 caggcgcaac agcaccacgg tggtggtgaa cacagtggcc tcagaaaatc cggatgaagc
     1021 cgggcgttat acaatggacg tcgagtatgg tcagtacagc gtcagtctgt tggtggaggg
     1081 attcccgccg tcacacgccg ggattatcac cgtatatgag gactcaaagc cgggcacact
     1141 gaatgatttc ctcggtgcaa tgacggagga tgatgtccgg ccagaggcac tgcgccgttt
     1201 tgaactgatg gtggaagagg tggcgcgtaa cgcgtccgca gtggcacaga acacggcagc
     1261 cgcgaagaag tcagccagcg atgcccgcac atcagcccgt gaggcggcaa cccatgcgac
     1321 tgatgctgca ggctcagcac gcgcagccag cacgtcagcc ggacaggccg cgtcgtcggc
     1381 tcagtcagcg tcttccagcg caggagcggc atcaacaaag gccagtgaag catcgaaaag
     1441 tgctgctgct gcagagtcct caaaaagcgc ggcagctacc agtgccagtg ccgcgaaaac
     1501 gtcagaaacg aatgcggcag cgtcacaaca atcagcagcc acttctgcat ccaccgcgac
     1561 cacgaaagcg tcagaagcag ccacttcagc acgggatgcg tcggcttcaa aagaggcggc
     1621 aaaatcatca gaaacgaacg cagcctcgag cgccagcagc gcagcttcct cggcaacggc
     1681 ggcagcaaat tctgcgaagg cggcaaaaac gtccgagacg aacgccaggt cttctgaaac
     1741 ggcagcggga cagagcgcct cagctgcggc agactcaaaa acagcggctg cattatctgc
     1801 cagtgccgcg tcaacaagtg ccgggcaggc ctcagccagt gccaccgccg ccggaaaatc
     1861 ggcagaaagt gctgcatcgt ctgcttcaac agccacaacg aaggctggcg aagccgctgt
     1921 acaggccagc gcagcagcga ggtctgcttc cgcagcgaag acatccgaga cgaacgcgaa
     1981 agcgtcggaa accagcgcag aatcctcaaa aacggctgcc gcatcgtccg ccagttcggc
     2041 ggcgtcatcg gcatcatctg cgtctgcttc aaaagatgag gcgaccagac aggcgtcagc
     2101 agcaaagggc agcgccacga cggcatccac gaaggcgaca gaggcagctg gcagtgcgac
     2161 ggcggcagct cagagcaaaa gtacggcgga atccgcggca acgcgcgctg agacagcggc
     2221 aaaacgggca gaggatattg catccgccgt ggcgcttgag gatgcgagca cgacgaaaaa
     2281 ggggatagta cagctcagca gtgcgactaa cagcacttcc gagtcactgg cggcaacgcc
     2341 aaaagccgtt aaggccgcgt atgagctggc taacgggaaa tacaccgcac aggatgcaac
     2401 gacagcacag aaagggatag ttcagcttag caacgc
//
LOCUS       DAJVUY010000284         2401 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.291, whole genome shotgun sequence.
ACCESSION   DAJVUY010000284 DAJVUY010000000
VERSION     DAJVUY010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.291"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..437
                     /gene="yeeE"
                     /locus_tag="OQQ72_004188"
     CDS             <1..437
                     /gene="yeeE"
                     /locus_tag="OQQ72_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transport protein YeeE"
                     /protein_id="HCS2013706.1"
                     /translation="LIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDVKYINWGV
                     FLVLGIFVGSFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVM
                     TAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN"
     gene            451..678
                     /locus_tag="OQQ72_004189"
     CDS             451..678
                     /locus_tag="OQQ72_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HCS2013707.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKA"
     gene            complement(721..2145)
                     /gene="sbcB"
                     /locus_tag="OQQ72_004190"
     CDS             complement(721..2145)
                     /gene="sbcB"
                     /locus_tag="OQQ72_004190"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HCS2013708.1"
                     /translation="MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGE
                     PEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN
                     NVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
                     PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA
                     LIDVPQMPPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSD
                     TLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK
                     ILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPA
                     LDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLV
                     QQYADDKEKVALLKALWQYAEEIV"
BASE COUNT          579 a          572 c          619 g          631 t
ORIGIN      
        1 gtttgattgc gcttttagcc tggcccctga gtgaagcaac cggacgcatg tttgggttag
       61 gaatcacttc cccaacggcc aatattctgc aatttctggt cgcgggtgac gtgaaataca
      121 ttaactgggg cgttttcctg gtgttaggga tcttcgtggg gtcatttatt gcagccaaag
      181 cgagccgtga gttccgcgtt cgcgcagctg atgcacaaac aacattacgt agcgggttag
      241 gtggtgtact gatgggcttc ggtgccagta ttgcaggtgg ttgctctatc ggtaatggac
      301 tggttatgac tgcaatgatg acctggcagg gctggattgg ccttgtattt atgattctcg
      361 gagtctggac tgcatcctgg cttgtgtatg ttcgaccgca gcgtaaggcg cgactggcga
      421 ctgctgcggc aaattaagta aggtgtaaag atggcgatta aaaagctgga tgtggtgacg
      481 caggtctgtc cgtttccact catagaagca aaagcagcac tggcagaaat ggccagcggc
      541 gatgagttgg taattgagtt tgattgcacc caggcaactg aagcaatccc acagtgggcg
      601 gcagaagaag gacatgccat caccgattat cagcagattg gcgatgcagc gtggagcatc
      661 accgttcaaa aagcctgact caacattgtc ctccgccgta ccagcggcgg aggcttcaaa
      721 ttagacgatc tcttccgcgt actgccaaag tgcttttaac agcgccactt tttctttgtc
      781 atcggcatat tgttgtacca gcatctgcaa ttcatcagca taaccctgca aaaactctgg
      841 cgtgaatacc tggcggcggt gctccagcca gcgttgctgc tcggcataat ccagcgtccc
      901 cgggaagttg cgtgcccgat aattgaacaa cagcttttca atccgtttat caacaaaagt
      961 gatatccagt gccggtaaat tacgtggctc ggtttccagc acaattttca ttgctgcacg
     1021 atctgcgtca ctgaaaaagc cgttataaag ctgtgcatcc acgttatctg taggcgtaaa
     1081 cggttcggct tccgcgaata tcgccaccac tttttcacgc acttgcggat tttcacgcag
     1141 aattttcagg ttatcgaggc aatgctgacg attaattccc agtcggtcgg catcttccgg
     1201 gcgtagcgta ttcgcctggg ccagcaccgg acatttattg atgtgcacca gcttaaccgg
     1261 aacggcggcg ttatcgccaa gatcggtttt tgcggtatat aaacgctcgc gcaatgtgtc
     1321 gctatccagt tccagtaatg gcgaaatgtc tcctgccaaa tccaccataa ttacagcatt
     1381 gcgattttca ggatgccacg ccagcggtgc cacccagctg gtattgccgc gccatgcccc
     1441 aaacattccg gaaacgtgaa ccaggggggg catctgcgga acatcaatca acgccatcag
     1501 tttgtgttta ttacgatggg taaagagata atcaaacagg cgtggctgac gcgtttttac
     1561 cagtttcgcc atcgcaatag tggcgtacac atcagccatc gcatcgtggg cgttgctatg
     1621 ttcaatacca ttcgctttgg ttaaatgctc aaggcgaaag ctcggtagac cgtcatcatt
     1681 ttcaggccag tttattcctt ccgggcgcag ggcataacag gcacgcataa catccaacaa
     1741 atcccagcgc gagttatcat gctgccagct ccaggcgtaa ggatcgtaga aattacgata
     1801 aaaaacgttg cgtgtgactt cgtcgtcgaa acgcacattg ttgtagccca gaatacaggt
     1861 cttcggtacg gtaaaaagcg agtgaatacg ggcggcaaac gcggcttcgt tttctccttt
     1921 cgcccgtgct tcctgcgggg taataccggt aattaatact gctccaggct ggggtaaata
     1981 gtcatccgcg ggcttgcagt aaaagacttc gggttcgccg atgacattga attcgctatc
     2041 ggtgcgaatg gctgcgaact gtgcagggcg atctaacgcg gggtgcgtgc caaaggtttc
     2101 gtaatcgtga aagaggaagg taggttgttt atctgtgtct gtcattgtct agcattgtcc
     2161 actgtagtta attaactgtc tgttataact cgaaaaacaa ccattttttc acctgagtat
     2221 gtctacgaac gtcaaatata gttgtttact gtgcgctgtt gtccatgtga tattgtgtac
     2281 cagatgtgta ccaaaccatt atttctgagc gtaccaaata ttatttatgg ctataagcga
     2341 cacaaaactg cgtagtattt atggtaaacc atattcgggc ccacaagaag tggctgatgc
     2401 c
//
LOCUS       DAJVUY010000285         2385 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.292, whole genome shotgun sequence.
ACCESSION   DAJVUY010000285 DAJVUY010000000
VERSION     DAJVUY010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.292"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            128..1264
                     /gene="potA"
                     /locus_tag="OQQ72_004191"
     CDS             128..1264
                     /gene="potA"
                     /locus_tag="OQQ72_004191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HCS2013709.1"
                     /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC
                     NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            1248..2111
                     /gene="potB"
                     /locus_tag="OQQ72_004192"
     CDS             1248..2111
                     /gene="potB"
                     /locus_tag="OQQ72_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HCS2013710.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
BASE COUNT          566 a          585 c          603 g          631 t
ORIGIN      
        1 ctaagccagt aattcacaac aaagattggc gattcaagcg gtttgccgta gaattaccgc
       61 cctcattaag agtcaccaag gtggttaacc acaaaccccg catcggtaag ccatccgttg
      121 cgtttacatg ggacagagta aaaaattgaa taaacaaccg agttcgcttt caccgctggt
      181 gcaattggcg ggaattcgca aatgctttga tggtaaagag gtcattcccc agctggatct
      241 gactatcaac aatggcgagt tcctcacgct gcttggccct tctggctgcg gtaaaacaac
      301 cgttcttcgc ctgattgcag gtctggaaac tgttgattcc ggacgcatca tgctggataa
      361 cgaggacatc acccacgttc cggcggaaaa ccgctatgtg aacactgttt tccaaagcta
      421 cgcacttttc ccccacatga ccgtgttcga aaatgtggcc tttgggttgc gcatgcaaaa
      481 aacccccgct gctgaaatta cgccccgcgt gatggaagcc ctgcggatgg tgcaactgga
      541 aaccttcgct caacgtaaac cgcatcagct ctctggtggt caacagcaac gcgtcgccat
      601 tgctcgcgcg gtggttaaca agcctcgtct gttgttgctg gatgagtcgc tctcagcgct
      661 ggattacaaa ctgcgtaagc aaatgcagaa cgagctgaaa gcgttacagc gtaagcttgg
      721 cattacattc gtcttcgtga ctcacgacca ggaagaagca ctcaccatgt cagacaggat
      781 tgtggtgatg cgcgagggtc gcattgagca agacggcacg ccgcgtgaaa tctacgaaga
      841 gccgaaaaac ctgtttgttg ccggcttcat tggcgaaatt aatatgttta acgccacggt
      901 gatcgagcga ctcgacgagc agcgcgtacg cgccaacgtt gaaggccgcg aatgtaatat
      961 ctacgttaac ttcgccgttg aaccggggca aaaactgcat gttctgctgc gcccggaaga
     1021 cttacgtgtt gaagagatta acgacgacaa ccacgctgaa gggctgattg gttacgttcg
     1081 tgagcgtaac tacaaaggca tgacgctgga gtcggttgtt gaactggaaa atggcaagat
     1141 ggtgatggtc agcgaattct tcaatgaaga cgatcctgac tttgaccact ctctcgacca
     1201 aaaaatggcc attaattggg tagaaagctg ggaggtcgta ctggctgatg aagaacacaa
     1261 gtaagttcca gaatgtagtg attgtcacta ttgtcggttg gcttgtgttg tttgtctttc
     1321 tgcccaacct gatgatcatt ggcaccagct ttttgacccg cgacgacgcc agtttcgtca
     1381 aaatggtctt tacgctggat aactacacgc gtctgctcga tccgctctat tttgaagtgc
     1441 tattgcactc gctgaatatg gcgctgatcg ccaccctcgc ctgcctggtg ctgggctatc
     1501 catttgcctg gtttctggcg aagctgccac acaaggtgcg tccgctgctg ctgtttctgc
     1561 tgattgttcc gttctggacc aactcattga ttcgtatcta cgggctgaaa attttcctca
     1621 gcaccaaagg ctatctcaac gagtttttgc tctggctggg cgttatcgac acaccaatcc
     1681 gtatcatgtt cacgcccagt gcggtgatta tcggtctggt ttacattctg ctgccgttta
     1741 tggtgatgcc gctgtactcc agtatcgaaa aactggataa gccgttgctt gaggcggcgc
     1801 gcgatctcgg tgccagcaag ttacagactt ttatccgcat cattattcca ctgacgatgc
     1861 cggggattat tgccggatgt ctgctggtga tgctgccagc gatgggcctg ttctatgtgt
     1921 ccgacctgat gggcggtgcg aaaaacctgc tgatcggtaa cgtcatcaag gtacagttcc
     1981 tcaatattcg tgactggccg tttggtgcag ccaccagcat tacgctgact atcgtaatgg
     2041 gcctgatgtt gctggtttac tggcgcgctt ctcgtttgct gaataagaag gtgagcgaat
     2101 tagatgatta atcatttata ttcaatgcat taagtttgtt tttgagtggt tttgccgttt
     2161 aaggtaacgg cgttatagat cctatcaaaa tcaatcaatt ccattctggt tttggcgaaa
     2221 gatttttcga gagcttcggt ctttaactaa aactgattgc gtataacccc aatacccctc
     2281 cccgactatc tgaatggtcg gggaggcact tcacgcacaa aatatcatcc ctgcgccgtt
     2341 gattactctg caggtgaagt cggccactca atatcaggtg cagtt
//
LOCUS       DAJVUY010000286         2368 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.293, whole genome shotgun sequence.
ACCESSION   DAJVUY010000286 DAJVUY010000000
VERSION     DAJVUY010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.293"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..72)
                     /gene="csgC"
                     /locus_tag="OQQ72_004193"
     CDS             complement(<1..72)
                     /gene="csgC"
                     /locus_tag="OQQ72_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309448.1"
                     /note="involved in autoagglutination of curliated cells;
                     not involved in production of curli fibers; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS2013711.1"
                     /translation="MNALLLLAALSSQITFNTTQQGDV"
     gene            complement(131..586)
                     /gene="csgA"
                     /locus_tag="OQQ72_004194"
     CDS             complement(131..586)
                     /gene="csgA"
                     /locus_tag="OQQ72_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curlin major subunit CsgA"
                     /protein_id="HCS2013712.1"
                     /translation="MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSE
                     LNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSAT
                     LDQWNGKNSEMTVKQFGGGNGAAVGQTASNSSVNVTQVGFGNNATAHQY"
     gene            complement(627..818)
                     /gene="csgB"
                     /locus_tag="OQQ72_004195"
                     /pseudo
     CDS             complement(627..818)
                     /gene="csgB"
                     /locus_tag="OQQ72_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309446.1"
                     /note="CsgB; functions as a nucleator in the assembly of
                     curli (coiled surface structures) on the cell surface;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curlin minor subunit CsgB"
     gene            1597..2247
                     /gene="csgD"
                     /locus_tag="OQQ72_004196"
     CDS             1597..2247
                     /gene="csgD"
                     /locus_tag="OQQ72_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CsgD"
                     /protein_id="HCS2013713.1"
                     /translation="MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ
                     RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP
                     HINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE
                     KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR"
     gene            2252..>2368
                     /locus_tag="OQQ72_004197"
     CDS             2252..>2368
                     /locus_tag="OQQ72_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309443.1"
                     /note="chaperone-like protein that participates in the
                     polymerization of curlin (CsgA) subunits into curli
                     (extracellular fibers from Escherichia and Salmonella spp.
                     that are involved in the colonization of inert surfaces
                     and biofilm formation); part of the curli secretion and
                     assembly protein complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli assembly protein CsgE"
                     /protein_id="HCS2013714.1"
                     /translation="MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSI"
BASE COUNT          675 a          513 c          476 g          704 t
ORIGIN      
        1 cacatcccct tgctgggtcg tattaaaggt tatctgactg gaaagtgccg caaggagtaa
       61 taacgcattc atattcttct cccgaaaaaa aacagggctt gcgccctgtt tctgtaatac
      121 aaatgatgta ttagtactga tgagcggtcg cgttgttacc aaagccaacc tgagtcacgt
      181 tgacggagga gttagatgca gtctggccaa ctgcagcacc gttgccacca ccgaactgtt
      241 taaccgtcat ttcagaattt ttgccgttcc actgatcaag agtagcgcta ttaccgaagc
      301 cacgttgggt cagatcgatt gagctgtcat ctgagccctg accaacatct gcaccattac
      361 cgccgccatg ctgggtaata gtcaagtcag agttacgggc atcagtttgc agagcaagtg
      421 cagagttacc gccaccgtac tggtaaatgt tcagctcaga atttgggccg ctattattac
      481 cgccaccacc gtggttaccg ccgccgccgt actgaggaac aacacctgcc agagcgctac
      541 cggagaatac gattgctgca attgctgcta cttttaaaag tttcatgtaa aacccccatc
      601 ggattgattt aaaagtcgaa tggaaattaa cgttgtgtca cgcgaatagc catttgcgac
      661 tgtctctgca ctacaattgc cgttttttga gtaccatact gtgtaatatt tgctttatta
      721 ccagaacctt tctggataat catcgcagta ttaccataag caccttgcga aatactggca
      781 tcgttggcac tgcccgcctg atcaatatat gcaaggttat tagactggcc ccctgaatct
      841 ccagacaacc agtatcactt aaataagtga tactggttgt ctggagattc agggggccag
      901 tctacgcaac ctgtattttg ttaacgctgc gttatgatgg aaagtatgtc tgcggaaata
      961 tttttaataa ctcacccgcg cgttgtattt ttcttttttt gttcatacca aagtattaaa
     1021 acccacgtaa atacgctgtt atctacgcaa aaaatatttt gttttctttt aaatctccgt
     1081 tttccgctat caaaaatcac cagacagtca tttttcttgc ccgtcgctga ttgctgcgat
     1141 atgtcttgcg cacaagccgt gacaaacctc gtctttttgg agtaaaaatt tgtccacgga
     1201 ggtgcggaga aaaaacaaga acgttttaca tgacgaaagg actacaccga aatatttttt
     1261 atatgtatta ttagtaagtt atcaccattt gtatgatttt ttaaaattgt gcaataaaaa
     1321 ccaaatgtac aacttttcta tcatttctaa acttaataaa accttaaggt taatatttta
     1381 gtataacaag ttacatttag ttacatgttt aacgcttgat ttaagttttg taatggctag
     1441 attgaaatca gatgtaatcc attagtttta tattttaccc atttagggct gatttattac
     1501 tacacacagc agtgcaacat ctgtcagtac ttctggtgct tctattttag aggcagctgt
     1561 caggtgtgcg atcaataaaa aaagcggggt ttcatcatgt ttaatgaagt ccatagtatt
     1621 catggtcata cattattgtt gatcactaaa ccttctttgc aggcgacagc tctcttgcag
     1681 caccttaaac aatcgctggc aattacagga aaattacata atattcaacg ttctctggac
     1741 gatatctctt caggctctat tattcttctg gatatgatgg aagcagataa aaagcttatc
     1801 cattattggc aggatacttt gagcaggaaa aacaacaata tcaaaatatt gttgctaaat
     1861 acgcctgaag attacccgta ccgcgacatt gaaaactggc ctcatatcaa cggcgttttt
     1921 tattccatgg aggatcaaga acgtgttgtc aatgggttgc aaggcgtcct gcgcggcgaa
     1981 tgctacttta cgcaaaagct tgccagctac ttgattacgc attcaggtaa ctatcgttat
     2041 aacagcacgg aatcagccct ccttactcat cgggaaaaag agatcctgaa taagctgcgt
     2101 atcggcgcgt ctaataacga gatcgctcgt tcgttgttca tcagcgaaaa tacggttaaa
     2161 acgcatcttt ataatctttt caagaagata gccgtaaaaa accggacaca agcggtttcc
     2221 tgggcaaacg ataacctcag gcgataaagc catgaaacgt tatttacgct ggattgtggc
     2281 ggcagaattt ctgttcgccg cagggaatct tcacgccgtt gaggtagaag tcccgggatt
     2341 gctaactgac catactgttt catctatt
//
LOCUS       DAJVUY010000287         2311 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.294, whole genome shotgun sequence.
ACCESSION   DAJVUY010000287 DAJVUY010000000
VERSION     DAJVUY010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.294"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..903)
                     /locus_tag="OQQ72_004198"
     CDS             complement(<1..903)
                     /locus_tag="OQQ72_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS2013715.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGAVISATSDPEYYFVVVLAGQSNGMSYGEGLPLPGTYDRPDPRIKQLARRST
                     VTPGGAACKYNDIIPADHCLHDVQDMSRLNHPKADLSKGQYGTVGQGLHIAKKLLPFI
                     PANAGILLVPCCRGGSAFTTGADGTYSDASGASENSTRWGVDKPLYKDLIGRTKAALE
                     KNPKNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLADMAGQCVGGSAGGVPW
                     ICGDTTYFWKQKNESTYQTVYGSYK"
     gene            complement(1393..1469)
                     /locus_tag="OQQ72_004199"
     tRNA            complement(1393..1469)
                     /locus_tag="OQQ72_004199"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1433..1435),aa:Arg,seq:tct)
     gene            complement(1483..1559)
                     /locus_tag="OQQ72_004200"
     tRNA            complement(1483..1559)
                     /locus_tag="OQQ72_004200"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1523..1525),aa:Arg,seq:tcg)
     gene            complement(1567..1642)
                     /locus_tag="OQQ72_004201"
     tRNA            complement(1567..1642)
                     /locus_tag="OQQ72_004201"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1607..1609),aa:Ile,seq:cat)
     gene            complement(1683..>2311)
                     /locus_tag="OQQ72_004202"
     CDS             complement(1683..>2311)
                     /locus_tag="OQQ72_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS2013716.1"
                     /translation="DGYEAKGSALKQHVMAPLISYFRDARAALGITAKQIADATGKKN
                     MVSHWFSASQWQLPNESDYLKLQALFARVAEEKHRRGELEKLHHQLVDTYTSLNRQYA
                     ELLSEYKHLRRYFGVTVQVPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGD
                     LIADFFMGSGSTVKAALALGRRAIGVELETERFEQTVREVQDLVSQNG"
BASE COUNT          526 a          688 c          559 g          538 t
ORIGIN      
        1 tttatagctg ccgtacaccg tctggtacgt ggattcgttc ttctgcttcc agaaatacgt
       61 cgtgtccccg catatccagg gaacaccgcc agcagagcca ccgacgcact ggcctgccat
      121 atccgccagg tctgcacgga atttatcaac cagcgcacca aactgtgcgg catgatttgc
      181 cggcgtaccg ccaaaatcaa attccccctg catccacacc acggcaaaca gcacattttt
      241 cgggttcttc tccagtgccg cttttgttcg accgataagg tccttataca gcggcttgtc
      301 cacaccccag cgggttgaat tctccgaggc accactcgcg tcactgtatg tgccatcagc
      361 tccggtggtg aacgctgaac caccacgaca gcacggaacc agcagaatgc ccgcattcgc
      421 cggtataaac ggcagcagtt ttttggcgat atgcagcccc tgccccacgg ttccgtactg
      481 cccctttgac aggtccgctt tcggatggtt aagacggctc atgtcctgca catcatgcag
      541 acaatggtcc gccggaatga tgtcgttata tttgcatgct gcaccgcccg gtgtcaccgt
      601 actgcgacgc gccagttgct taatacgcgg gtccggacgg tcatatgtcc ccggcagcgg
      661 aaggccttca ccatacgaca tgccgtttga ctgccctgcc agaaccacaa caaagtaata
      721 ctccgggtcg ctggtggcgc tgattactgc accttctgct gcaatcgcct gcatcagagt
      781 ataaggggtt atggccaccg gactaccaaa cggctgccag ccctctttca gtttatgtgt
      841 cagcttttcc gcaagatctg acggcgacgc cgccctgaca acatcatagt gtttaaaagc
      901 catgaatcct cccggccggg ataatattgt gagtaaaatg aggagcgggc tgaagtccgg
      961 aagttacagg acaatggcag aagagagacg acagcccgca attcgaaaaa gaccgcgcag
     1021 ttgcgcagag tgactactat ggggtattat tcgccagctg aaatattact tcacgtttta
     1081 ttgtttattc cttgccgccc gcgtctccca gcgcgggctt tttttgccca caagaaagcc
     1141 cctccggaga ggggctggag agtggcgcta tgtgccattg catggtgccg ggtgcctccc
     1201 ggtgaattca gtaccagcac ctgaatccgc gattatccca tatacctact cgctgattgc
     1261 ccctccgcac agggggattc accatgccag tttcttttaa caaactcccc gcaaaccaga
     1321 caacagtcaa ccgtctgaat tgtgagacat ttaaaaaaaa agcccgcaaa agcgagccag
     1381 ggaaaataag tgtggcgcgt tgtactggat tcgaaccagt gaccgattgc ttagaaggca
     1441 attgctctgt ccggctgagc taacaacgca tgatgcagat aatggaccgc catcggggac
     1501 ttgaaccccg cgcagccagc ttcgaaggct ggcgctcttt cctgatgagc taatggcggt
     1561 atgtgatggt ggcccttgct ggatttgaac cagcgacctg gcgattatga gtcgctcgct
     1621 ctcaccactg agctaaaggg ccgggagccg cataataacg acgcgtaatt aattcttcaa
     1681 tatcatccgt tctggctgac taaatcctgt acttcccgaa ccgtctgctc aaaacgttca
     1741 gtctccagct caacgccaat tgcacgacgc ccgagcgcca gtgccgcttt cactgtcgaa
     1801 cccgacccca tgaaaaaatc tgcaatcagg tcacccggac gactgctagc gctgattatc
     1861 tgctgcagca tttctgccgg tttttcgcac ggatgtttcc cgggatagaa ctgcaccggt
     1921 ttatgcgtcc acacatcggt atacggcacc tgcaccgtca cgccaaaata ccgccgcaga
     1981 tgtttatatt cactcagcag ctccgcatac tgccggttca gtgaggtata cgtatccacc
     2041 agctggtggt ggagcttttc cagttcacca cgccgatgct tctcttctgc cacccgggca
     2101 aacagcgcct gtaatttcag ataatcgctt tcattcggca actgccactg actggcactg
     2161 aaccagtgcg acaccatgtt tttctttcct gtggcatctg caatctgttt tgccgttatc
     2221 cccagggcag ctcgcgcatc acgaaagtaa gaaatcagcg gggccatcac atgctgtttc
     2281 agtgcactgc ccttcgcctc atagccatca t
//
LOCUS       DAJVUY010000288         2262 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.295, whole genome shotgun sequence.
ACCESSION   DAJVUY010000288 DAJVUY010000000
VERSION     DAJVUY010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.295"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            111..432
                     /locus_tag="OQQ72_004203"
                     /pseudo
     CDS             111..432
                     /locus_tag="OQQ72_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232281.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(466..672)
                     /locus_tag="OQQ72_004204"
     CDS             complement(466..672)
                     /locus_tag="OQQ72_004204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013717.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(1170..1243)
                     /locus_tag="OQQ72_004205"
     tRNA            complement(1170..1243)
                     /locus_tag="OQQ72_004205"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1209..1211),aa:Gly,seq:ccc)
     gene            complement(1322..2077)
                     /locus_tag="OQQ72_004206"
     CDS             complement(1322..2077)
                     /locus_tag="OQQ72_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HCS2013718.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKTGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT          603 a          532 c          491 g          636 t
ORIGIN      
        1 tcatacacta aatcagtaag ttggcagcat taccaatttt gctaagttaa tgcattaatc
       61 taaaaacgct ttaaatcaat acataaccat tatctcttgg gattatttac atgcgcaaaa
      121 gtttaatgct gttacttgct tcaacattga ttatttctgg atgtgcaaca aaaaaacaac
      181 tcgttccaac tggtggaagc aaatcagacg gcacagttag gatgagttat tcttacggta
      241 tgtttgaaag tcctgttgta gatccacaac aaggcatgaa tgcagccaaa gcgcgttgtg
      301 ccgcttaggg gatattcagg agccgagcct tttggtggat tcacttctca atgttcacaa
      361 ccttcttcat ctggttgtat gcaaacactt gtgactatcg aatatcaatg cactggcgat
      421 attaagaagt aataattagg ggcttccagc cccttctata accattcatg gaacagggac
      481 aaccgaaatc actttaaacc ctgaaacagc cgttactcca ttagatggag aattaaatct
      541 cacagtatct tttcttactg catcatgaat ttcatctttt gttggttcat gctctgaatg
      601 gaataaaacc tcttccattc taatttgatc accgtctcta tgctcataag taatcttgta
      661 gctaacagtc atatcaacct catgcagggg aattgtgaga ttattataga caatagaaac
      721 cataaagccc cgttggtgat acagcaacaa gcgggagcgt agcgacttca tcagattgtc
      781 agaaagatca caccttatca ggataaccgt gtacccgttg ggagcgtggc tgaaacgctg
      841 atagagcttg catatggttt gcaaggacca atatcaccat aaacctgttt acgcagccac
      901 aaggccgcac atcgggctta aatgcgtgtg ttcagtctgt cgatgacatt acaatgccag
      961 gatgggcttt atcttcacgt tgtgctatcg cggtgtgaga ggtgcaactg ccgccaacgt
     1021 taggttatac tgtcatctca ccgtgtaact taacgtgaca gttactaagg gcggatcaca
     1081 atggtagaac tcctaagcaa attaaatagg taactgttta agttgctgac agagaagact
     1141 tttttagtct tctccacctg gggagattct ggagcgggcg aagggaatcg aaccctcgta
     1201 tagagcttgg gaagctctcg ttctaccatt gaactacgcc cgcttcgaga tgcgtaaggc
     1261 attataaacc ttacgctctc cttagcaagt gccgcgctgc tgactgctga ttaattcgcc
     1321 atcagcattt tggcttgctg ccctgcggcg gcaagtaacg tagcggatca attgccgttg
     1381 cacggtaacg aatctggaaa tgcaggcgaa cagatgccgc atccgtgctc cccatagtgg
     1441 cgattttttg cccagtcttc acgctttgcc cattatttac cagcatcgtg tcattatggg
     1501 cgtaagccgt aatgtaatct tcactgtgtt taatcatgat gagattaccg tagccacgca
     1561 gctggttgcc cacatacacc acctttcctg cacccgcggc gtaaataggt gtaccccgtg
     1621 gagctgagat atcaatccct ttattgccgc catctgctgt cgaatacggc atgataactt
     1681 tccctgtcgt tggccataac caacaacgtt gccctactgg cggccaggaa gatttcggta
     1741 ccgctgatga cggtgtaacc gatgcggttt tggtcgttga tttggcggtt gatttacgtg
     1801 tactactgct acttttcgcc ccacccagtt ttagtttctg accaacttca atggtgtaag
     1861 ggggggaaat gccgttcagt cgcgccagtt cttttacgct ggttcccgtg gtgcgcgaaa
     1921 tacgatatag cgtatccccc cgtttcacgg tgtaaacgga gccggaatat gttcctgtat
     1981 cggatgattt gctacccgaa cagcccgcca aaagcagtcc aaccgataac aacatcacga
     2041 tacccagaga ttttttattc aggcgtcccg cactcaaaat ctttcctcgc ttaaaaaaca
     2101 agacgcctta tcatagcagc cagcctcttg atacccaatc tcttgcttct ggaaaaacgt
     2161 ggtaatagag aaagaggtta atttcatttg gcaaagggaa gtatcatcag caaaatattc
     2221 gctgtagagg tatcgaactt cctgactttt taccctattt cc
//
LOCUS       DAJVUY010000289         2231 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.296, whole genome shotgun sequence.
ACCESSION   DAJVUY010000289 DAJVUY010000000
VERSION     DAJVUY010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.296"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..500)
                     /locus_tag="OQQ72_004207"
     CDS             complement(<1..500)
                     /locus_tag="OQQ72_004207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HCS2013719.1"
                     /translation="MAHIQLIKQTSSGLLLPATPESCDFLHQIKTGEWIHADFKRVRN
                     YAFHKRFFKLLQLGFDYWTPIGGAITPRERELVSGFVEYLCESVGREHTPALSEAAEQ
                     YLNTVATRRTRDTALLKSFEAFREWVTIQAGFYTEHIYPDGSRGRRAKSISFANMDET
                     EFQQVY"
     gene            complement(539..826)
                     /locus_tag="OQQ72_004208"
     CDS             complement(539..826)
                     /locus_tag="OQQ72_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013720.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(1076..1231)
                     /gene="hokD"
                     /locus_tag="OQQ72_004209"
     CDS             complement(1076..1231)
                     /gene="hokD"
                     /locus_tag="OQQ72_004209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS2013721.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     VDYESRK"
     gene            complement(1473..2138)
                     /locus_tag="OQQ72_004210"
     CDS             complement(1473..2138)
                     /locus_tag="OQQ72_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HCS2013722.1"
                     /translation="MTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDY
                     TIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGI
                     RCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWD
                     YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKE
                     EKE"
BASE COUNT          563 a          579 c          506 g          583 t
ORIGIN      
        1 ttataaacct gctgaaactc ggtttcgtcc atattcgcaa acgagatgga tttcgccctg
       61 cgcccacggc taccgtccgg ataaatatgc tcggtgtaaa atccggcctg aatggttacc
      121 cactcgcgga aagcctcaaa cgactttagc aatgctgtat ctcgggttct gcgtgtcgca
      181 actgtattca gatattgctc tgcggcttcg ctcagagctg gcgtatgttc ccggcctact
      241 gattcgcaca ggtactcaac gaagcctgat accagttctc gttcgcgagg cgtaatcgcc
      301 ccaccgatcg gagtccagta atcgaatccc agttgcagga gtttgaaaaa acgcttgtgg
      361 aatgcgtagt tacgcacacg cttaaagtct gcgtgtatcc actcacctgt tttgatttga
      421 tgcagaaaat cgcaactctc cggcgtcgcc gggagaagta atccggaaga ggtttgtttg
      481 atcagttgta tatgcgccat cggctttctc cggtggcacg gtgttacaca gcaggagttc
      541 aatcctgctc aagattgtag atgagtttat tcttcagcaa aagcagaaaa ccagccttaa
      601 aaccaatctc tttcaaaacc cgtaatgatg tgacaaattc gtcctcacgc aaaataaaac
      661 cgtccgtcag aagtccatta caaaaataaa ataacacagc accgctcttc ctttgttgag
      721 attgcaaaca tctaatgcgg caatggctga caatcgctcc attctcaacg cgcacagcat
      781 agaggccatt ttcactaaaa atttcacgca attcttcgat tttcatcttc agaatccttc
      841 cagataaata gctctcccct gttcggggtc catccctctt ctccctgcgc gctacttaag
      901 tgagtcgatt ctatctgcga aggtgcgcga atcaaattca ccggaaataa acaacaaaaa
      961 acccgccgaa acgctgagag atcacagcga tgggcgggtt aagtgcgggt gcgttgagga
     1021 tgcctgacac atcagaggtg ggcggggatg ggatcagctc cccgcccggt cactcttact
     1081 tcctggattc gtagtctacg aagacagcga cctccgtctg gccggttcgg attcgtacct
     1141 cacagaggtc tttcctcgtt accagtgccg tcactatgac ggttaaacag atgacgatca
     1201 gggcgattaa catcgccttt tgctgcttca tagcctgctt ctccttgcct ttcggcatgt
     1261 aagaggctaa cctacatgtg caaagcatga aattggcctc agattaatgt taagcgtctt
     1321 gccggacgcg taatgttaac tggggctttt ctctatctgc cttttggtgt tcatgcctga
     1381 agcagatagc ctgaagcaga tagcctcaag cacccgcagt cattctactt acctcgccaa
     1441 tatgaaatca atcagaaagg tgccccataa aatcactcct tctcttcttt accgtagtgg
     1501 agttgaccaa ttttgataag agggcgtccc tgagatttgc ggtgtagatt ggtatcgcgc
     1561 agagaataca cacagccaca atattcctgc tgatagaatt tttcgcgctt gctgatttca
     1621 atcatacggg acgagcctcc ctgcttgcgc cagttataat cccagtacac catgcccgga
     1681 taatgcgcga cggctcgccg cccacagtcg ttaacctgct gcatattttt ccagcgtgaa
     1741 atgcccagtg aactgctgat cacactgaaa ccattttcag cggcgtacag cgctgtccgc
     1801 tcaaaacgca tgtcaaaaca catggtgcaa cggatccctc gttcgggctc ccattccatt
     1861 cctttggctc gttcaaacca gttgtctgtg tcgtaatcag catcaataaa cggcacgccg
     1921 tgttgttcag caaagcgaat attctcatcc ttacgaatta aatactcttt ctgaggatga
     1981 atgttcgggt tgtagaaaaa gatggtgtag tcgattcccg aggcctgaag cgcctccatc
     2041 acctcaccgg aacatggagc acagcaagag tgcagtagta gtttgtttgc cccgtttggg
     2101 agctccaatt tgggccgttt gaaatcagca actgtcataa atatgtttat tggggtcata
     2161 aaaatatcaa agagtgtagc attagaacgg ggctatcgga aacagatgtg tgactgctcc
     2221 ccgccctttc g
//
LOCUS       DAJVUY010000290         2209 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.297, whole genome shotgun sequence.
ACCESSION   DAJVUY010000290 DAJVUY010000000
VERSION     DAJVUY010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.297"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            135..692
                     /locus_tag="OQQ72_004211"
     CDS             135..692
                     /locus_tag="OQQ72_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000863301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013723.1"
                     /translation="MAGVGFDGSSDISISAKNVNAFALRQTGNTVNGDTSVGWNWDSG
                     AYNALIGGASALILHFNINAGSCPAVQFRVNYKNGGISYRSARDGYGVELGWSDFYTT
                     TRKPSAGDVGAYTRAECNSRFITGIRLGGLSSVQTWNGPGWSDRSGYVVTGSVNGNRD
                     ELIDTTQARPIQYCINGTWYNAGSI"
     gene            695..1228
                     /locus_tag="OQQ72_004212"
     CDS             695..1228
                     /locus_tag="OQQ72_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000972171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2013724.1"
                     /translation="MMHLKNITAGNPKTKEQYQLTKQFNIKWLYSDDGKNWYEEQKNF
                     QPDTLKMVYYHNGVIICIEKDVSAINPEGASVVELPDITANRRADISGKWLFKDGVVI
                     KRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKV
                     ESTDTSSLPVTFPEQPE"
     gene            complement(1257..1820)
                     /locus_tag="OQQ72_004213"
     CDS             complement(1257..1820)
                     /locus_tag="OQQ72_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000930007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2013725.1"
                     /translation="MAHGITSHRCKLCSILKNIKSGNPKTKEQYQLTKNFDVIWLWSE
                     DGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDAPTLNPEGFSVVEIPDITANRRADD
                     SGKWMFKDGTVVKRIYTADEQQQQAESQKVALLSEAESVIQPLERAVRLNMAMDEERT
                     RLESWERYSVLVSRVDTANPEWPQKPE"
     gene            complement(1789..>2209)
                     /locus_tag="OQQ72_004214"
     CDS             complement(1789..>2209)
                     /locus_tag="OQQ72_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013726.1"
                     /translation="FKNIQAGDGKKFTLSSSNNSTKNATFNLWGASTRPVVAELGNEA
                     GWHFYSQRNTDNSVIFSVNGQIQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAG
                     HAITGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV"
BASE COUNT          618 a          474 c          489 g          628 t
ORIGIN      
        1 gcacaagcgg ggagaaaata ccgttactca gtacagcgaa tacctggacc aatcgacaaa
       61 cattcagcgg tggcctttct ggggaactgt ccggcaatgc cgctactgca acaaagctga
      121 aaacagcacg aaaaattgct ggagttggtt ttgatggttc tagcgatatc tcaattagtg
      181 ccaaaaatgt caatgcattt gcactccgac aaacaggtaa tactgttaat ggtgatacat
      241 ccgttggatg gaattgggat agtggtgcat ataacgccct gattggtggt gcatctgcat
      301 taattcttca ctttaatata aatgctggta gctgtcctgc cgtacaattc cgtgtgaatt
      361 ataaaaatgg tggcatttcc tacaggtcgg ctcgtgatgg ttatggggtt gaattaggtt
      421 ggtcagattt ctataccacg acacgaaaac cttcagcggg agatgttggt gcatatacgc
      481 gggcagaatg taactcaagg tttattacag gtattcgcct tggcggtctg tcatctgttc
      541 agacatggaa tggtcccggc tggtctgaca ggtcaggtta tgtcgttacg ggttcagtta
      601 acggaaaccg tgatgaatta attgatacaa cacaggcaag gccaattcag tattgcatta
      661 atgggacgtg gtataacgcg gggagtattt aacgatgatg cacttaaaaa acattactgc
      721 tggcaaccct aaaacaaaag agcaatacca gctaacaaag caatttaaca tcaaatggct
      781 ttattcagat gatggaaaaa actggtatga ggaacaaaag aatttccagc cagacacttt
      841 gaaaatggtc tattaccata acggcgttat tatttgtatt gaaaaggatg tttcagcaat
      901 taatccggaa ggcgcaagcg tcgttgaatt acctgatatt acagcaaatc gccgggctga
      961 tatttcgggg aaatggttgt tcaaagatgg cgtagtgata aagcgaactt ataccgagga
     1021 agagcagagg caacaagcgg aaaatgaaaa gcaaagcctg ttgcaacttg tcagggataa
     1081 aacccagcta tgggactcac agctacgact gggcatcatt tccgacgaga ataaacaaaa
     1141 attaaccgag tggatgctct atgcgcagaa agtcgaatct acagacacct ccagcctgcc
     1201 agtaacgttt cccgaacaac cagaatgaga gaaggcccga tattgggcct taatttttac
     1261 tcaggctttt gtggccattc gggatttgct gtatccacac ggctgaccag aacgctgtag
     1321 cgttcccatg actccagtcg tgtgcgttcc tcatccatcg ccatattcag cctgacagcg
     1381 cgttccagtg gctgaataac gctttcagct tcagaaagca acgcgacctt ttgtgattcg
     1441 gcctgttgtt gctgttcgtc tgctgtataa atccgcttaa ccacagttcc gtccttaaac
     1501 atccacttcc ctgaatcatc ggcacgacga ttggctgtta tatctggaat ctcaacgaca
     1561 ctaaagcctt cgggattaag cgttggggca tctttggtta tggcaacaat aatattattt
     1621 tcgtcgtata caatctttat ggtgtcgtcc tgaaagttat ttacttcctc ataccagttt
     1681 ttaccgtctt cggaccataa ccagataaca tcaaaattct ttgttagctg atattgttct
     1741 tttgtttttg gatttccgga cttaatattt tttaatatgc tgcataattt acacctgtgc
     1801 gacgttatac catgtgccat tgatgtattt ttgtattggt ctgaagatgg cttcatcatc
     1861 gccatctact tcaccaatga ttcttaatcc ggtaattgcg tgtccggctt tttcataacg
     1921 accaccacgc gccatcaatt gaacaacacg cgtacccagg cgaacatctt ttacatagcg
     1981 tgaatcaaaa ttcccccagt tgctgggctg tatctgaccg ttaacagaaa atattaccga
     2041 gttatctgta tttcgctggc tatagaaatg ccatcctgcc tcattgccta actctgcaac
     2101 tactggacgg gttgaagcac cccataaatt aaacgttgca ttctttgtgg agttgttgga
     2161 gctggatagc gtgaattttt taccatcccc ggcctgaata tttttaaaa
//
LOCUS       DAJVUY010000291         2207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.298, whole genome shotgun sequence.
ACCESSION   DAJVUY010000291 DAJVUY010000000
VERSION     DAJVUY010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.298"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="OQQ72_004215"
     CDS             complement(117..1571)
                     /gene="ospC2"
                     /locus_tag="OQQ72_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HCS2013727.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLRNGAVSGKRFGR"
     gene            1996..>2207
                     /locus_tag="OQQ72_004216"
     CDS             1996..>2207
                     /locus_tag="OQQ72_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS2013728.1"
                     /translation="MARYDLPDEAWTIIKPLLPPEPTTPRAGRPWAEHRKIINGMFWV
                     LCSGAPWRDLPERYGAWKTVYNRFNR"
BASE COUNT          685 a          405 c          366 g          751 t
ORIGIN      
        1 cgttcaccac atgcaatgtg ttgttgcagg ggaacggtct gcaccatccc ctatatcgat
       61 caatataaca aaaatgacaa cgtcagattc agggcacaac ctaaatatat tttaggtcac
      121 ctcccaaatc gtttgcctga taccgctcca tttcttaata aaaaatcaat tgtttttgaa
      181 tctttgcttt tcattgcatt gtcaagcata gtgtccccac tatttgcttt ttgaaatctt
      241 ttgtttacat caaccaatcc attattaata aaatattcta gcactttata gttggcacta
      301 tcttcactaa gtaaatactc aacatcatac agctcacaat acatattgtt gttcattttc
      361 tccatctctg cgatatcttg ttttgtaaaa ttaaatttag atagtaaata aagtgccata
      421 tcagattttg cattgcctag agaataagca agagcttgat gagccatttt tttatcagtc
      481 accttattgt taatttcttc ataattggat gctttaatgg catcctccaa agatatatct
      541 ctgagtctta tctttttgaa gttatctgtg cttagcattc ttggtatatg atactcaagc
      601 tgaaacacaa agtttataat tctatccaga ctaacaggat caatgttttt attataacaa
      661 aactctcgga atctttgatc tttactcttt cttataaaat caataagatg caacccaatt
      721 ccaagcctca tatctttagt attaaatatt ggcacatcag tttttccctg attaccatgc
      781 acatacctgc taacttcatc cacaacctct ttaaagttat ctaagaaaaa tgattggtgc
      841 tcatggtaaa aaacaggtgg aatagcatta tcaaagtggt cggttaatgt catatatcca
      901 tatggagagt catgatcaat gatatacgca ttagcaccaa aatccacagt atgatgtgtt
      961 ttatttagtg ggagtgtttc ttgatgattg gaaatttcaa ccccaaaaaa aacaaaatcg
     1021 tggttagcta tttcttcaat atcctcagag aatgtgtttt tatatgtttg tatattctca
     1081 gacttaattt tatcaaagga cttaatatta agagtattat ttgacaggtt agcgttactt
     1141 tgatgtctga agttaaaatc agaattaata ataatagaga gcaagtgacg ttcatccgaa
     1201 gaaagaggat gagttttttg tattatttca gaaagatagt gtctggacac cttatcgagg
     1261 tgctcaagtg accgaaatga tgaccgtgct ccagatggcg cttcaataga aagatttaat
     1321 gatttgaaac tggtcccttg agagaacatt ttactataac tttgcgctgc tatagacttc
     1381 cttaaaaagc ttttcacagt atcagcacag tgatctaaat gtttttcact tatgccagaa
     1441 gaggatgagt ttgttacgca tgatatgttt ttttgtaatg cttttgtatc tttgttcgga
     1501 tttatttttc catcaacaag atcaatattg ttctgaacat taatatgatt tactgcttca
     1561 ggtattttca taaaacatcc cccattatgt gcgtttttat ctgcagttat ttagaataaa
     1621 attatctaac ttaatatttt cttgtatgta ttataacgaa catattttaa tatgttgtac
     1681 gattttcact ctgaaatccc ctgagtttaa tcacacttcc tttactgaaa ggaattattg
     1741 caacagtatt atttgttttt ggatatatat cttgcgcctt gttatgtagt taatgctcag
     1801 aatatgatag ataaaataga gacgcagaac agggcatgct cataacatga tgataacata
     1861 aaaaattagt aacaataaat gaaagaatca tgggcgctca acaaaaagag agctaaatag
     1921 ctgcgcggaa tagtaggctg tgtcccttaa tcatctgagt tatagtaact gtctgtttac
     1981 acaacatatt gaactatggc tcgctacgac cttcccgatg aggcatggac catcatcaag
     2041 cccctgttac ctcctgaacc caccacacca cgggccggac gcccatgggc tgagcaccgt
     2101 aaaatcatca atggcatgtt ctgggtgtta tgttccggtg caccatggcg cgatttaccc
     2161 gaacgatatg gggcatggaa aactgtttat aaccgcttta accgatg
//
LOCUS       DAJVUY010000292         2173 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.299, whole genome shotgun sequence.
ACCESSION   DAJVUY010000292 DAJVUY010000000
VERSION     DAJVUY010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.299"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            376..519
                     /locus_tag="OQQ72_004217"
                     /pseudo
     CDS             376..519
                     /locus_tag="OQQ72_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558263.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            666..934
                     /locus_tag="OQQ72_004218"
                     /pseudo
     CDS             666..934
                     /locus_tag="OQQ72_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1325..>2173
                     /locus_tag="OQQ72_004219"
     CDS             1325..>2173
                     /locus_tag="OQQ72_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS2013729.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPLLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLAMANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGNSA
                     TISAPEH"
BASE COUNT          726 a          464 c          365 g          618 t
ORIGIN      
        1 gcttcttacc atatttgaaa taaagctcaa tagcgcaaat tttttgttct tcagtaaaca
       61 tgtttcatct tctgagagtc caggaaatcg tccgcatccc cattaccgtc ttatatcact
      121 ggcgctgaca tgtgctcatt gatgaagtga atctgaatga catgttttgc catatcaacg
      181 ccaaccggtg tatatttcat ttgtggagtc tccagtctga ggacgcttta tgcatcccgt
      241 attgggcagt atgatgccgg aaagctgcga ggctccacac ctgccagttt caccctttta
      301 accatcatac tactccgtgt ttaattgtgt gggatgcgtt cattacattt taacagtgtc
      361 accccgtcgg ccacgaaaga taaacaggtg accagaaaag ggatcttcat ccagcacatg
      421 ctatatcttg aacgtaacaa cctgaccctc cgcacccgca tcaagcggct ggcacgtaaa
      481 acaatctgct tctcgcgttc cgtggaaatc cacgaaaagt catcggctcc ttcattgaaa
      541 aacacatatt ctactgattg gaagcgccac ccgaaaaagt atcgtttttt tacagtaaac
      601 ttcatttagc cgactataat gtaaaaaaat aaatttttta ccgaaatata acataaggaa
      661 gtaatatgct tacacaaact atattccctt gtcttcccaa aaaacaagaa aatatcatcc
      721 ctgaagtatc aaatactata ttagtatctt ctactgttac tacagatgga tgtactgttt
      781 ttaataaaca aaaacagcca tatacgaatt gcaaatacct gctaccaacc gaacgaaaaa
      841 gttgaaattc acagctacag aaatacaatg gttgacaaag ataaatgaag ccggaattaa
      901 tgaaaaacaa agccaacggt attctgattt ctgaagttaa tttcagactc gtttaagctc
      961 cattttcaaa aaaaatatat cagggtttgt tactaataac ttctgaaaac agaaaaaaat
     1021 agagcagtaa ttctatttca gagaggagta actccatcta tcctcgatac gtactgaacg
     1081 ttatcgtgat atattcatca tgctttcttc accattattc gagtacaggg agagacgcaa
     1141 tgaccttaaa taccttttta tggctgaatt accattctca ggaataacag cagactcctt
     1201 cccatagacg gcttaggggg aaagcaatac ccggagaaag ggtacaaagc aaactgtttt
     1261 aaaattaata agctatattc tatttcacta gaattcttat cgctgataag aaattttagt
     1321 tataatgatt aaatcaacca atatacaggc aatcggttct ggtattatgc atcaaataaa
     1381 caatatatac tcgttaactc catttccttt acctatggaa ctgactccat cttgtaatga
     1441 attttattta aaagcctgga gtgaatggga aaagaacggt accccaggcg agcaacgcaa
     1501 tatcgccttc aataggctga aaatatgttt acaaaatcaa gaggcagaat taaatttatc
     1561 tgagttagat ttaaaaacat taccagattt accgcctcag ataacaacac tggaaataag
     1621 aaaaaaccta ttaacacatc tccctgattt accaccaatg cttaaggtaa tacatgctca
     1681 atttaatcaa ctggaaagct tacctgcctt acccgagacg ttagaagagc ttaatgcggg
     1741 tgataacaag ataaaagaat taccattgct tcctgaaaat ctaactcatt tacgggttca
     1801 taataaccga ttgcatattc tgccactatt gccaccggaa ctaaaattac tggtagtttc
     1861 tggaaacaga ttagacagca ttcccccctt tccagataag cttgaagggc tggctatggc
     1921 taataatttt atagaacaac taccggaatt accttttagt atgaacaggg ctgtgctaat
     1981 gaataataat ctgacaacac ttccggaaag tgtcctgaga ttagctcaga atgccttcgt
     2041 aaatgttgca ggtaatccac tgtctggcca taccatgcgt acactacaac aaataaccac
     2101 cggaccagat tattctggtc ctcgaatatt tttctctatg ggaaattctg ccacaatttc
     2161 cgctccagaa cac
//
LOCUS       DAJVUY010000293         2165 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.300, whole genome shotgun sequence.
ACCESSION   DAJVUY010000293 DAJVUY010000000
VERSION     DAJVUY010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.300"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ72_004220"
     CDS             complement(<1..709)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ72_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HCS2013730.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSSPDYHGP"
     gene            complement(971..1066)
                     /locus_tag="OQQ72_004221"
                     /pseudo
     CDS             complement(971..1066)
                     /locus_tag="OQQ72_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ72_004222"
     CDS             complement(1102..1407)
                     /gene="ccdB"
                     /locus_tag="OQQ72_004222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HCS2013731.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ72_004223"
     CDS             complement(1409..1627)
                     /gene="ccdA"
                     /locus_tag="OQQ72_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HCS2013732.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          572 a          457 c          508 g          628 t
ORIGIN      
        1 gtgggccgtg gtagtccggc gaagaggtta atctttgcag ggcttgcaga gcatgggatg
       61 ataatgggtt atcactaata tgtattgaac attcattcct cagattaaga atgctttccg
      121 ggatatgact tatctgattt ctatcaaaaa aatactctct gacaacggga ttatttccct
      181 cagaaaatgc tggtagctca gtgaggaaat tacgggtcgc tctgagattt ttaagagcct
      241 gtgggagcga tggtaaggag actatttcgt tatagctgat attcatagtc aataacgaat
      301 cgggtaaagc tggcaggttt tccagctcat tgtgttgtac ctgaagtgac tccagcgcag
      361 gaggtagcac gggcaattct gataatttat tgctggcgga atataatttt tttagcgtaa
      421 caggcagttc aggtaggtta gttaattgat tatatgatac attgagcagc gttatctgag
      481 ctggtaagtt gtcaggtagc gaggacagat ttaaacggtc cagtcgaagt tcatcggaat
      541 tattgataag acattcttta agtcgggaga cagcctcatc acgctcttca ccggggagcg
      601 cttgtttttc ccatttatcc catgctgaaa agtaatcagc atatgtaccg gaaatagtgt
      661 tataaaaaga attttggggc aatgaaaagt tattatttat cggtaacatg atgggcatcc
      721 agttaaagcc ggtggacaaa tggctttgtt aaaagaaata agcaggagtt tttatgaagt
      781 tcattccatg aaatgaactt cagcactttt ttattataat aaggataaac aaaattggct
      841 gtaaaaaaac gatactgttt cagttaaccg tgaatggcct gtttgcaccg tattgttctt
      901 gtttttcggt tagttaaaca tcgtacttca tatttgaacg gtaagcggct cgtcagaacc
      961 gtattgatat ttactgagag gtcagatcaa ctttccaggg caacagatcg cgtacccggt
     1021 ttgccggcca gtcttggata tgctcaatga cgtaacgcag ccattttgtc aacgccacga
     1081 tttttgaccc tagcctgaca tttatattcc ccagaacatc aggttaatgg cgtttttgat
     1141 gtcattttcg cggtggctga gatcagccac ttcttccccg ataacgaaga tcggcacact
     1201 ggccatatca gtggtcatca tgcgccagct ttcatccccg acatgcacca ccgggtaaag
     1261 ctcacgggag actttatctg acagcaggcg ggcactggcc agggggatca ccatccgtcg
     1321 tccgggcgtg tcaataatgt cactctgtac atccacaaac agacgataac gactctctct
     1381 tttataggcg taaaccttaa actgcatttc accagtccct gttctcatcg gcaaaagagc
     1441 cgttcatttc aataaaacgg gcgatctcag ccatcccctg ctgattttca gcctgccagc
     1501 gttccgcacg cagacggcgg gcctcttttt gcatggccgt atttaccagg cctgagatat
     1561 tcacgtttgc ggatttaagt aactgatagc tgtcactgtc tatagtgaca gtaatacgct
     1621 gcttcatgat aagccctcaa aaacatactt atgatatgta tatgagtata tattaatggt
     1681 acaaaccatc aatatccata aaaagtacac cattaattca ctataagttt ttaatacaat
     1741 tttttctgct gcgatttttt tatacgataa ttagcatact tataacaccg taagtaaatt
     1801 acatgaaagc aggcacagcg tgatccgatt tttctgcgta taacgatttt ccggaagtgt
     1861 aatacggttg cgccccgggc cgggcaccct tttctgttgt tgtgtacggg cccacagaga
     1921 atggtaccgg aggcgggctc agaagtactg agtcgggtga tcgcgtcagg ccgcgaagta
     1981 ctgacacggg tattggtgac tggtgatgaa gtactgcccc gggtatgatt tcaggctgat
     2041 tcaggttctg attctctgtc agtccgcgtg gttgctggcc tggctgattt cctgttgtca
     2101 ggcgttcaac aaccgactgc aggttatagc ccggttcacg aaccacggca gcctggcggc
     2161 tgcaa
//
LOCUS       DAJVUY010000294         2164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.301, whole genome shotgun sequence.
ACCESSION   DAJVUY010000294 DAJVUY010000000
VERSION     DAJVUY010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.301"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            120..560
                     /locus_tag="OQQ72_004224"
     CDS             120..560
                     /locus_tag="OQQ72_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013733.1"
                     /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN
                     TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY
                     RQRRCKSPGDDSETLTRRNDAIFGNHVWQTFAQYFPPGLEKPAV"
     gene            complement(639..2164)
                     /locus_tag="OQQ72_004225"
                     /pseudo
     CDS             complement(639..2164)
                     /locus_tag="OQQ72_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415715.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
BASE COUNT          499 a          512 c          549 g          604 t
ORIGIN      
        1 atattcgaca cctgctttac gggtgaaaaa aatcaatata gcacttcgat atccgataaa
       61 gtcggttccc ggtaacaaca acagaatcct tttttaatta ttgtttcgtt gtttttggtg
      121 tgattcagaa aataaatatt ttagacagta gccagtcagg cgttaaaaat ggggcggata
      181 gtgaggcggt tttggctgcg cttattgaac atttagaatt gatcaatcct tctggcagat
      241 taagccaaaa tacccgttcg gcaatgcttc agttacgcga agaggaatgg tctgaattct
      301 ttttttggtt gctaaattct ctggagtgtc tggattatgt gattattaat ttaactccag
      361 aaagcaaaaa aacgttgatg agtgaacacc gtaacaatat tcaggtagca atcgatgctt
      421 tatataggca acgtcggtgt aaatcaccgg gggatgatag tgaaacactt acccgtagaa
      481 atgacgctat cttcggcaac cacgtatggc aaacatttgc gcaatacttc ccgccaggac
      541 ttgaaaaacc ggctgtgtag aaaacaccat agctatggtg ttatctgccg acaacgccat
      601 ccggagaagc cgaatgacgt tgtcggagta agcgctggtt aaggtgtggg ttgtgcctct
      661 ttggttgagg gttgcgtcgt tgctgactta acggtcggac gcgtcgccgg aacattgtca
      721 cacggttgct ctttcgggca gatcaaatcc agcattttca gcgtcacgcc attggtccag
      781 ccaaagccat cctgtaatgg atattcgcca cctctttttg cccgtagttt tgtaatcctt
      841 ctgtcgcgac ccactgtaac ggtgcccagc catttggcgc atcccattgt tgcccacttt
      901 tcaccgacgt ggtgttcagg ccgccgggtt gcagcagatg tgttttcgtc gccgtcgcca
      961 ttttgttggc gcgatctttc gctgccgcat tgacgtacag cgggaacagg gcggccgcgg
     1021 ttaactgatt gcgcacttta tgacttttca ggtcgtaatc ggcataccag ccttgttgat
     1081 cgttccacag gtatttttcg attccttttt gacgggcatt cgccagcgtt tcgtactggt
     1141 ttgccatcgc gttatctcct gcagctttgc tggcgcgggc gaggattttt tccattttaa
     1201 acatcaggct gttcagatcg accggtacga tgctggtggt gcgtaaggta tttaactgct
     1261 gcgggttgtc catccagcgc gagctgaaat cccagccaga cgcagcggca gagcgcaggt
     1321 cgcggtaaat ttcagtggca ggtcgattcg gattgctttt ggcggtggca atatcttcca
     1381 cccatgactc tggtcgtggc gtatcgcgat cgtcccagta gcggttgaga agggtaccat
     1441 cctgaagttt gacaacgcgt ttttcctgtt gtccggcttg caggttttca acaccgtcca
     1501 tccagtaagc atattctttt tgcatttgcg gcaggtattg cttcaacgcg gcatcgcctt
     1561 catgctgcgc cagtaactct accatcaggg caaagaaggg cggttgcgag cggcttaaat
     1621 agtaactgcg gttgccgttg ggaatatgac cgtaagtgtc tatttcatga gcaaaattgg
     1681 ccaccatatc cgcgacttta tcccagtgac cgctttcggc aagtcctaac atggtgaagt
     1741 aactgtccca gtaatatacc tcgcgaaaac gtccgcccgg cacgacataa ggttccggca
     1801 gcggtaacag agaatcccat ttttcggtgt tttcggtaga acgcgttaat accggccaaa
     1861 gtccgtcaat atgttcgcgc agtgactgcc cctctggcgg aacatatttc tcgccttctt
     1921 tcggcagggt gaaattgacg ttaacgaaat ggcgcagatc aaatccgctc tggttttgct
     1981 gcatccgata atcagcggat cgctgttcgg cacggcatcg gcaaaggttt tttggtccgg
     2041 aaaaagtttg gcgttttgca catcattaaa cagcggccct aataaaatat caggcggctg
     2101 tggtgttacc ggtgtttctt ctgcctgcac cgatagcgca gcgaaacaca aaaagataca
     2161 ggct
//
LOCUS       DAJVUY010000295         2113 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.302, whole genome shotgun sequence.
ACCESSION   DAJVUY010000295 DAJVUY010000000
VERSION     DAJVUY010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.302"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(35..286)
                     /locus_tag="OQQ72_004226"
     CDS             complement(35..286)
                     /locus_tag="OQQ72_004226"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013734.1"
                     /translation="MPGTTTAMSINFIGITARTMNSNGSHGKPQIPVDYQKLLSIEDI
                     TFCRNRWGNIGENALRRVAVGKKLSFFGSDRGGENAAII"
     gene            209..899
                     /locus_tag="OQQ72_004227"
                     /pseudo
     CDS             209..899
                     /locus_tag="OQQ72_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(916..1095)
                     /locus_tag="OQQ72_004228"
                     /pseudo
     CDS             complement(916..1095)
                     /locus_tag="OQQ72_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1425..>2113
                     /gene="ipaH7.8"
                     /locus_tag="OQQ72_004229"
     CDS             1425..>2113
                     /gene="ipaH7.8"
                     /locus_tag="OQQ72_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HCS2013735.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRI"
BASE COUNT          630 a          471 c          389 g          623 t
ORIGIN      
        1 ctggcaaaag tgtagcggta ttaagcgcag ctatttagat tattgccgca ttttctccac
       61 cacgatcaga gccgaaaaaa gataattttt ttccaactgc cacccggcgt aatgcgtttt
      121 caccaatgtt accccaccta ttgcggcaaa aggtaatgtc ttcaatcgat agaagtttct
      181 ggtaatctac tggtatttga ggttttccat gactaccgtt actgttcatt gtccgcgctg
      241 taattccgat gaagtttatc gacatggccg tagttgttcc cggcatgagc gtttccgttg
      301 tcgctcatgt aaacgtgttt tccagctcac ttactcttat gaagccagaa aactcggcgt
      361 taaggagcag atcgttgaaa tggcacataa cggcgcaggg ggctgttata ccgccagaac
      421 actgaaaatc ggcatcaata ccgtcatacg gacattaaaa agctctcgcc ccggcggata
      481 acatctgcgc cagtcgctca cgctgatgtt gcccttatct gtgaacttga tgagcagtgg
      541 cgcttcgttg gcagcaaggc gcaacaacac tggccctggt atgcgtacaa cactaaaact
      601 ggcggtgtgt tggcttacac ttgcgggcca cggaatgatg agacctgtcg ggaactgtta
      661 gccctgttga ctccgttctg tatcggcatg gtgaccagcg atgactgggg cagctacgcc
      721 agagaagtgc cggaggagaa acacctgacc ggcaaaatct tcacgcaacg tatgaacgta
      781 acaacctgac cctccgcccc cgcatcaagc ggctggcacg taaaacaatc tgcttctcgc
      841 gttccgtgga aatccacgaa aaagtcatcg gttccttcat tgaaaagcac atattctaat
      901 gattggaagt actacccggc aaaactcatt cagtgcattc cagtgattca ggatatagtt
      961 gaacgccttt accatttcag catggtttga caaagttttc ctctggagct ttatccagtc
     1021 atacaaggac ttcattcgcg gcacacattt ctcctgcctt accgcaagcc gtttttctgc
     1081 cggcctccct cgtattaaat gtgtatcgtt tttttacagt aattttaatt tatcattcta
     1141 taataggaat aaatgagctt ggctaaaata tgatataaaa caaatatact tactcggatt
     1201 acatttcctt gctcactgga atgttgaatt cagtgttatt attgactgca gtcacaataa
     1261 aaaaaagaat tccatagaaa acctcaacaa ataaattaca actaacttct gttatgtgta
     1321 aaatggaaac tattaaaact taatatcgaa aatggtaagt gaaatttgta taaatataca
     1381 attttaaata tttattctca caaatataag gttgccctag cattatgttc tctgtaaata
     1441 atacacactc atcagtttct tgctccccct ctattaactc aaactcaacc agtaatgaac
     1501 attatctgag aatcctgact gaatgggaaa agaactcttc tcccggggaa gagcgaggca
     1561 ttgcttttaa cagactctcc cagtgctttc agaatcaaga agcagtatta aatttatcag
     1621 acctaaattt gacgtctctt cccgaattac caaagcatat ttctgctttg attgtagaaa
     1681 ataataaatt aacatcattg ccaaagctgc ctgcatttct caaagaactt aatgctgata
     1741 ataacaggct ttctgtgata ccagaacttc ctgagtcatt aacaacttta agtgttcgtt
     1801 ctaatcaact ggaaaacctt cctgttttgc caaaccattt aacatcatta tttgttgaaa
     1861 ataacaggct atataattta ccggctcttc ccgaaaaatt gaaattttta catgtttatt
     1921 ataacaggct gacaacatta cccgacttac cggataaact ggaaattctc tgtgctcagc
     1981 gcaataatct ggttactttt cctcaatttt ctgatagaaa caatatcaga caaaaggaat
     2041 attattttca ttttaatcag ataaccactc ttccggagag tttttcacaa ttagattcaa
     2101 gttacaggat taa
//
LOCUS       DAJVUY010000296         2025 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.303, whole genome shotgun sequence.
ACCESSION   DAJVUY010000296 DAJVUY010000000
VERSION     DAJVUY010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.303"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            92..304
                     /locus_tag="OQQ72_004230"
     CDS             92..304
                     /locus_tag="OQQ72_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013736.1"
                     /translation="MPLHGAGCLPVNSVPAPESAIIPYTYSLITPPHRGIHHAKFFNK
                     LPAGQTIIASLNYEQRGILRENCFLQ"
     gene            complement(793..879)
                     /locus_tag="OQQ72_004231"
     CDS             complement(793..879)
                     /locus_tag="OQQ72_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3927 family protein"
                     /protein_id="HCS2013737.1"
                     /translation="MVDFSSRIMSVLSDGVLVAGVWLLLSRC"
     gene            complement(969..1045)
                     /locus_tag="OQQ72_004232"
     tRNA            complement(969..1045)
                     /locus_tag="OQQ72_004232"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1009..1011),aa:Arg,seq:tcg)
     gene            complement(1055..1130)
                     /locus_tag="OQQ72_004233"
     tRNA            complement(1055..1130)
                     /locus_tag="OQQ72_004233"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1095..1097),aa:Ile,seq:cat)
     gene            complement(1180..>2025)
                     /locus_tag="OQQ72_004234"
     CDS             complement(1180..>2025)
                     /locus_tag="OQQ72_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001575625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS2013738.1"
                     /translation="RVLKPAGSLYLFCGHRLASDIEIMMRERFSVLNHIIWAKPSGRW
                     NGCNKESLRAYFPATERILFAEHYQGPYRPKDAGYAAKGSALKQHVMAPLISYFRDAR
                     AALGITAKQIADATGKKNMVSHWFSASQWQLPNESDYLKLQSLFARVAEEKHQRGELE
                     KPHHQLVDTYTSLNRQYVELQSEYKHLRRYFGVTAQVPYTDVWTHKPVQFYPGKHPCE
                     KPAEMLQQIISASSRPGDLVADFFMGSGSTVKAALALGRRAIGVELETGRFEQTVREV
                     QDLIV"
BASE COUNT          500 a          579 c          470 g          476 t
ORIGIN      
        1 ctaaaacaac aaagtccata aggagtttac tcacatctga caaaatcaat ataaacagcc
       61 cctccggaga ggggctggag agtggcgcta tgtgccattg catggtgccg ggtgcctccc
      121 ggtgaattca gtaccagcac ctgaatccgc gattatccca tatacctact cgctgattac
      181 ccctccgcac agggggattc accatgcgaa attttttaac aaacttcccg ccggccagac
      241 aataatcgcc agcctgaatt atgagcaacg tggcatttta cgggaaaact gttttctgca
      301 gtaaaaaggc ccgccggagc gagcctggaa ggatagcggt catgtgatgc cggtttcccg
      361 gtaactcagc atcggtatct gagtcaacgt tttctctact gggtcatttc cgatacgttc
      421 cgccttccgg cagactttca tcacgtcaga aaatatagca ccctgagtaa caggacagta
      481 ctcagaattc aggaaactgt gacacatcct gcacagaaaa gcccctccgg agaggggctg
      541 aagtatagcc taatttctgt ctgtcgcatg gtgccagggg cctcccggta aattcagcct
      601 gtctactgaa tttgcatgtt ctctggatca tacactttgc cagatgcccc gccgctgagg
      661 gggattcacc atgcgatgta atttttaaca aattctccgg cagccagaca atcatcaagc
      721 tgtggaattg tgaggtattt aaaaatttca acgggtaact gataccctgc taatcgcctg
      781 atgctttctt tttcagcaac gggaaagcaa caaccacaca cccgccacca aaacaccatc
      841 agacagcacc gacattatcc ggctgctgaa gtccaccatc accaccagaa acaacaggag
      901 tgcaaccaca gctgcttaga aggcaattgc tctgtccggc tgagctaaca acgcagaata
      961 ccgataaatg gaccgccatc gagaactcga accccgcgca accagcttcg aaggctggcg
     1021 ctctatcccg atgagctaat ggtggtatgt gatatggtgg cccttgctgg atttgaacca
     1081 gcgacctggc gattatgagt cgctcgctct caccactgag ctaaagggcc gggagcagaa
     1141 taataatggt gcgtaattaa ttctgcaatc tcatccgttt caaacgatta aatcctgaac
     1201 ttccctgact gtctgctcaa aacgtccggt ctccagctca acgccaatcg cacgacgccc
     1261 gagcgccagt gccgctttta ccgttgaacc tgagcccata aaaaaatctg caaccaggtc
     1321 acccggacga ctgcttgcgc tgattatctg ctgcagcatt tctgccggtt tttcgcacgg
     1381 atgtttcccg ggatagaact gcaccggttt atgtgtccac acatccgtgt acggcacctg
     1441 cgccgtcaca ccaaaatacc gccgcagatg cttatattca ctctgcagct ccacatactg
     1501 ccggttcagt gacgtatacg tatccaccag ctggtggtgg ggcttttcca gttcaccgcg
     1561 ctgatgtttc tcttctgcca cccgggcaaa cagcgactgt aatttcagat aatcgctttc
     1621 gttcggtagc tgccactgac tggcactgaa ccagtgcgac accatgtttt tctttcctgt
     1681 ggcatctgca atctgttttg ccgttatccc cagggccgcg cgcgcatcac gaaagtaaga
     1741 aatcagcggg gccatcacat gctgtttcag tgcactgccc ttcgccgcat acccggcatc
     1801 tttcggacga tacggcccct gataatgttc cgcgaacaga atgcgctctg tggcggggaa
     1861 atacgcccgc aggctttcct tgttgcatcc gttccagcgt ccggacggct tcgcccagat
     1921 aatatggttc agcacactga agcgttcacg catcatgatt tcgatatcag atgccaggcg
     1981 atgaccacag aacaggtaaa gacttccggc aggtttcagc acccg
//
LOCUS       DAJVUY010000297         2019 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.304, whole genome shotgun sequence.
ACCESSION   DAJVUY010000297 DAJVUY010000000
VERSION     DAJVUY010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.304"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..93)
                     /locus_tag="OQQ72_004235"
     CDS             complement(<1..93)
                     /locus_tag="OQQ72_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of g-type lysozyme"
                     /protein_id="HCS2013739.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEF"
     gene            335..628
                     /locus_tag="OQQ72_004236"
     CDS             335..628
                     /locus_tag="OQQ72_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HCS2013740.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            700..1359
                     /locus_tag="OQQ72_004237"
     CDS             700..1359
                     /locus_tag="OQQ72_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS2013741.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1451..1897
                     /locus_tag="OQQ72_004238"
     CDS             1451..1897
                     /locus_tag="OQQ72_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309703.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HCS2013742.1"
                     /translation="MNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIY
                     FTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDL
                     PVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          532 a          436 c          526 g          525 t
ORIGIN      
        1 gaactcaaca ttgacattct tacccgcagc aaagctcgtg gaggttagca gtgcaaacag
       61 caatacagcc ttactgatgc tcttgatttt cattggtagt ctcctgttca gaatgagtac
      121 gatgaactgt tataatataa caatccctaa cgggagaatt ccagtggctt ttctgcgttc
      181 ggtaaaatcc cggcgcggca ttttttgccg gggggattac ttataaaggg gcatggactc
      241 aacaaaccgc agaaatctac agctggctgg cttgtggcgc gggtttcatt gatgttagct
      301 tatgccaaaa cctggcatct taaagagtaa aagtatgttt tgtgtgattt atcgaagcag
      361 caagcgtgac cagacctatt tatatgtcga aaaaaaagac gatttttcgc gtgttcctga
      421 ggaactgatg aaaggttttg gtcagcctca gttagcgatg attctgccgt tggatgggcg
      481 gaagaaactg gtcaatgctg atattgaaaa ggttaaactg gcattaaccg agcaaggtta
      541 ctatttgcag ttaccgccac cacccgaaga tttgctgaag caacatcttt ccgtcatggg
      601 gcagaaaaca gacgacacga acaaataacc gatatccggc ggtggcatta tctttgtcgg
      661 cgcgggtttt catatccacg ataaggtgag gggaacgtta tgtatcaaca tcacaactgg
      721 caaggtgcgc tgctggatta tccggtgagt aaagtagtct gtgttggcag taactatgcc
      781 aaacatatta aagagatggg cagcgcagtg cccgaagagc cagtgctgtt tattaaacca
      841 gaaacggcac tgtgcgatct gcggcagcca ttggcgatcc catccgattt cggttcagtt
      901 catcatgaag tcgaactggc ggtgttgatt ggtgcgacgc tgcgtcaggc aacggaagag
      961 catgtccgca aagccattgc cggttacggc gtggcgcttg atctgacatt gcgtgatgtt
     1021 cagggaaaaa tgaagaaagc cgggcagccg tgggaaaagg ctaaagcgtt tgataactct
     1081 tgtccgcttt ccgggtttat ccccgcggcg gaatttaccg gcgatccaca aaatacaacg
     1141 ctgggcctga gcgtaaacgg cgaacaacgc cagcaaggta cgactgcgga catgatccat
     1201 aaaatcgttc cgttgatcgc ttatatgagc aagtttttta ccctcaaggc cggtgacgtt
     1261 gtgttgacag gcacgcctga tggcgtcggc ccgttgcaaa gcggtgatga gctgacagtc
     1321 actttcgatg ggcattcttt gacaactcgc gttttgtaat actttttgcc gcctgaaagc
     1381 ggcggcaaaa cttgcatcgc tgtgccagac tggttataag gtgcgtttta acgtaatggc
     1441 ggaacacctg atgaacgatg tacctttctg gcaaagtaaa accctggacg aaatgagcga
     1501 tgcggaatgg gagtcgttgt gtgatggttg cggtcagtgt tgcctgcata aactgatgga
     1561 tgaagacacc gacgaaatct acttcactaa cgtcgcctgt cgccagctca atattaaaac
     1621 ctgtcaatgt cggaactacg aacgtcgttt cgagtttgaa cccgactgca ttaaattaac
     1681 ccgtgaaaat ctgccaacat tcgaatggct gccaatgacc tgcgcttatc gtttgctggc
     1741 ggaaggtaaa gatttacctg tgtggcatcc gctacttact ggttcgaaag cggcaatgca
     1801 tggtgaacgt atctctgtgc gtcatatcgc agtgaaagaa tcagaagtga ttgactggca
     1861 ggatcatatc ttaaataaac ctgactgggc gcagtgataa atttaataga tgttgatggg
     1921 ggctttctta atatacgtct ggatgctcgc catttcgtag ccctgttttt gaaagcgctc
     1981 tgtcataatg agagttaccc gataccttat tatcaacag
//
LOCUS       DAJVUY010000298         1939 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.305, whole genome shotgun sequence.
ACCESSION   DAJVUY010000298 DAJVUY010000000
VERSION     DAJVUY010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.305"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(24..>1939)
                     /gene="pdeF"
                     /locus_tag="OQQ72_004239"
     CDS             complement(24..>1939)
                     /gene="pdeF"
                     /locus_tag="OQQ72_004239"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
                     /protein_id="HCS2013743.1"
                     /translation="IIIILCWGGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFL
                     ILFQFAAFVGLLASRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFY
                     LRSYYSQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPL
                     MMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNY
                     MAVLATRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDAPWSALCYLRIPGMEMLVK
                     NYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQ
                     FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMY
                     LQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELISPDS
                     FLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPFEVSQ
                     LLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLK
                     NVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIREAVLSL
                     GIDYMQGYLIGKP"
BASE COUNT          566 a          471 c          438 g          464 t
ORIGIN      
        1 tcattcaacg tatcaattaa cggctacggc ttaccaataa gataaccctg catataatcg
       61 atccccaaag agagcaccgc ctcgcggatc tcttcgtttt caacgtactc tgccactacc
      121 cgcattttct tcattcgcgc caggtggcaa atcgatgcca ctatctgata atccagacta
      181 tttgacacaa tattgcggat aaaactgccg tcaattttaa gcagatcggc attcacattt
      241 ttaagccgtg catagctggc gtagccggtg ccgaaatcat caatcgcaat ctggcagcct
      301 aattcctgaa gatgctgcaa ggtgatttgc gcctgcttaa cattggtcag agcattactt
      361 tcggtgactt caaaaataag ttgccacgct tcaatctgat atttagccag caactgactg
      421 acttcaaaag gaaaacgagc ctgacatacc gaggttggag acagattaat agcaaaacgg
      481 tgagcgggca tcttcgctct gttttcagcc ataaattgca gcgtatgctc aatgacccac
      541 atgtcgatac tcgacgataa accaaattcg tgcgcgaccg gcaagaagct atcggggctg
      601 atcagttcat cattctcacc tttcatgcgc agaagaattt catggtaaac atcaccacgc
      661 ataccggtaa tcggctgggc catcaggaaa aaatggttgt gttccagcgc ctgctgtagt
      721 cgattcatca tcgcgacttt atctttcaat tcgcgttgca aatacattgc cccgcgacgc
      781 tgcatatttt ccggggcgtt ggtcacgatg gaaagttcgg cgaccgtatt tagctctccc
      841 agcagcaggt agatatgatt cactggcgag cgcacatagc agtaactgac gccaatctgc
      901 ggttgcatcg gcatgccatc ccaaaagaaa cgaaattgct tgagatggct atccagtgcg
      961 gtaatgcgct cctggtgcga ttctgtattc agtcgcagcg cgagatcgtt acccgaaagc
     1021 tgataaacat cttcacccgg ttccagcaag ggtgacagcc agtgagaaag tttttgcttg
     1081 tattgaatcc gcagcatgat gccatagttc ttaaccagca tttccatgcc agggatgcgt
     1141 aaataacaaa gcgcagacca gggggcatca cgcaacgcgc gattcagggc gcgaacattt
     1201 ggcagatgaa ccaccgggtc cacatacgca agccgctgaa tgcgtctgac taccgctctc
     1261 tgacgggttg ccagtacagc catataattg acaataaaag agaataccag ataactggag
     1321 gaggttatgg tcagctgcgt ggtatagcca ggataaatgg gaatgtaatt ttgatagctg
     1381 tggatgctga tcatcaacac gaccgcccag agcagagaaa tcagcttata accatagcgc
     1441 atcgctcccc acatcatcag gggcagcaat aatgacaagg tataattggt gctaaaaatt
     1501 gtgctttttt catttaacgg catgcataac agcaacaata aagcacctaa tgccagtagc
     1561 cagagcgcga actctttttt ggtgactttg gcatcaacct gctgttttaa ttgcgaataa
     1621 tagctacgta aataaaatgg atttcgcact acccgaatga tgaagtagca cagcgggaca
     1681 ccgatcagat tacccaccag taaggcctga taattgatta aagtcccgag gttaaaaggc
     1741 atgacaccga ccagattttc tctgctcgcc aataatccta caaatgcagc aaactggaaa
     1801 agtatcagaa acagcgttgc aggaaacaca atctgccaga atatacgctg ggaaattaaa
     1861 cgggtatcac catgtgaaac gttgttacgc cggggagtaa agaccctgta accgccccaa
     1921 cagagaatga taatgataa
//
LOCUS       DAJVUY010000299         1936 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.306, whole genome shotgun sequence.
ACCESSION   DAJVUY010000299 DAJVUY010000000
VERSION     DAJVUY010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.306"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            33..1280
                     /locus_tag="OQQ72_004240"
                     /pseudo
     CDS             33..1280
                     /locus_tag="OQQ72_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001601124.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
     gene            1280..1864
                     /locus_tag="OQQ72_004241"
     CDS             1280..1864
                     /locus_tag="OQQ72_004241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000885581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2013744.1"
                     /translation="MAFRMSEQARTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD
                     IAPPDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDELFISELGPLPENVTWLSP
                     EGEFQKWNGTAWVKDTEAEKMFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEE
                     TSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE"
BASE COUNT          508 a          437 c          509 g          482 t
ORIGIN      
        1 catctgaaac gcttgccgcg acaccgaaag cagtgaaagc agctaatgat aatgcgaatg
       61 gtcgggtacc ttctgcccgt aaggtgaatg gtaaggcgct ttcagcggat ataacactga
      121 cgccgaaaga tattggtacg cttaactcaa caacaatgtc attcagcggt ggtgctggtt
      181 ggttcaaatt agcaacggta accatgccac aggcgagttc tgttgtttca attacgttga
      241 ttggtggtgc gggatttaac gtggggtcac ctcaacaggc aggtatatct gaacttgttt
      301 tgcgtgcagg taatggtaat ccgaagggga ttactggtgc tttatggcag cgcacatcga
      361 cagggtttac aaattttgcc tgggtcaata catctggtga tacttacgat atttacgttg
      421 caatcggaaa ttatgcgact ggtgtaaata ttcaatggga ttataccagt aatgccagcg
      481 tgacgattca tacgtcacca gcatattctg ctaataagcc ggaagggtta acggacggta
      541 cagtttattc actctatacg ccatcagagc agttttatcc gcctggcgca ccaatcccgt
      601 ggccatcaga taccgttccg tctggctatg ccctgatgca ggggcagact tttgacaaat
      661 ctgcataccc gaaacttgca gccgcttatc cgtcaggcgt gatccctgat atgcgtggct
      721 ggacgattaa gggcaaaccc gccagtggtc gtgccgtatt gtctcaggaa caggacggca
      781 ttaaatcgca cacccacagc gccagcgcat ccagtacgga tttggggacg aaaaacacat
      841 cgtcgtttga ttacggaacc aaatccacga ataacaccgg ggcgcatacg cacagtctga
      901 gtggctctac ggggtctgcc ggtgatcata ctcatggtaa tggtattcgt tgaccaggag
      961 gcggcggttc tgcgttagca ttttatgatg gcggtgggtt cacttatgtc caggattcac
     1021 agtatcaagt aagcccgggg acttcttccc gtagatcgta ttatcaacgt attcagacac
     1081 agtcagcagg tgctcatacc cactcgctgt ctggtactgc agcaagttct ggcgcacatg
     1141 cacatactgt aggtattggt gcgcatacgc actccgttgc gattggttca catggacaca
     1201 ccatcaccgt taacgctgct ggtaacgcgg aaaacaccgt caaaaacatc gcatttaact
     1261 atattgtgag gcttgcataa tggcattcag aatgagtgaa caagcacgga ccataaaaat
     1321 ttataatctg ctggccggaa ctaatgaatt tattggtgaa ggtgacgcat atattccgcc
     1381 tcatacaggt ctgccagcaa acagtaccga tattgcacca ccagatattc ctgctggctt
     1441 tgtggctgtt ttcaacagtg atgaggcatc gtggcatctc gttgaagacc atcggggtaa
     1501 aacggtttat gacgtagcgt caggggacga gttatttatt tctgaactcg gtccgttacc
     1561 ggaaaatgtt acctggttat cgccggaagg ggagtttcag aagtggaacg gcacagcctg
     1621 ggtgaaggat acggaagcag aaaaaatgtt ccggatccgg gaggcggaag aaacaaaaaa
     1681 caacctgatg caggtagcca gtgagcatat tgcgccgctt caggatgctg cagatctgga
     1741 aattgcaacg gaggaagaaa cctcattgct ggaagcctgg aaaaagtatc gggtgttgct
     1801 gaaccgtgtt gatacatcaa ctgcacctga tattgagtgg cctacgaacc ctgtcaggga
     1861 gtaatcattg ggattatgcc gcagcacgtc ttaagcaaga acgtgctgcg gttggatgct
     1921 attttttccc tgaagc
//
LOCUS       DAJVUY010000300         1837 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.308, whole genome shotgun sequence.
ACCESSION   DAJVUY010000300 DAJVUY010000000
VERSION     DAJVUY010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.308"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>1837
                     /locus_tag="OQQ72_004242"
     CDS             <1..>1837
                     /locus_tag="OQQ72_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HCS2013745.1"
                     /translation="RYEKGGKDGITMTFIGPSPSVQDKSASTDNTNINGEDMTEIEES
                     MLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARAEELPAVTALAISHKTSLL
                     DSLEIRDLHKLVRDTDKVFPNPGNSDLGLITAFFEAYLDADYTVRGLLTKEWMKGNRV
                     SRITRTASGANAGGGNKTDRNPNLVHTLDTLDVEIAAATLPMDFNIYEIPGSVYRRAK
                     EVVLKKESPFKEWSAALRAPPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINAYLT
                     ETDHENPSKETLTATRHTPEKDILEEINREVVTERETEEEKPQPSDAMAGEQATTETM
                     EPDTTEHCQNAQSLDAQSQVSSANQVKVTADEVNKIMQAANISQPDADKLLAVSRGEF
                     VEGISDPNDPKWVKGIQTRDSVNQNQHESERNDQKAEQNSPNALQNEPETKQSEPVAQ
                     QEPEKVCTACGQSGGGNYPDCGAVMDDATYQKTFDEENQVEVQENDPEEMEGAEHPHK
                     ENAGSAQDHASDSKTGETADPLITVNGHHEITSTSRTCDHLMIDLETMGKNPDAPIIS
                     IGAIFFDPQTGDMGPEFSKTIDLETAGGVIDRDTIKWWLKQSREA"
BASE COUNT          560 a          465 c          448 g          364 t
ORIGIN      
        1 accgctatga aaaaggcggg aaagatggca tcacaatgac atttatcggc ccttccccct
       61 ctgttcagga caaatcagcc agcactgata ataccaacat caacggcgaa gacatgactg
      121 agattgagga gagcatgctt ctacctgtct ccggtcagga actgcccatt cgttggcttg
      181 ctcaacacgg cagcgaaaaa ccagtaacgc acgtttcacg cgacgaactc caggcattac
      241 acattgcacg ggctgaagaa ctaccggctg ttactgccct ggctatttcg cataaaacca
      301 gtctgctcga ctcgctggag attcgcgacc tccacaaact ggttcgtgac actgacaaag
      361 ttttccctaa tcctggtaat tcagacctgg gactaataac tgcttttttc gaagcatact
      421 tggacgctga ctacactgtt cggggcctgc tgacaaaaga gtggatgaaa ggaaatcgtg
      481 tttcacgcat cacccgcacg gcttccggtg ctaatgctgg tggtgggaac aaaaccgatc
      541 gcaatccgaa tttagtacac accctcgaca cactggatgt ggagattgca gcagccacac
      601 ttccgatgga ttttaatatt tatgaaattc cgggcagcgt ttatcgtcgc gcaaaagaag
      661 tagtcctgaa aaaagaaagt ccgttcaaag aatggtccgc agcacttcgt gcacccccgg
      721 gtattctgga ctattcccgc gccgctattt ttgcacttat ccgaagcgca caccctgaat
      781 tttatcacta cccgggacgc cttcaggggt atatcaacgc ctatttgacg gaaactgatc
      841 acgagaaccc cagcaaggaa actctcacag ctacccggca tacgccggaa aaagatatcc
      901 tggaagaaat taaccgcgag gtggttactg agcgtgaaac agaagaagaa aaaccacaac
      961 catctgacgc aatggcaggt gaacaggcaa caactgaaac aatggaaccg gatacaactg
     1021 aacattgcca gaacgcgcag tcgctggatg ctcagtcgca ggtgagttcc gctaaccaag
     1081 taaaagtcac cgctgacgaa gtaaacaaaa ttatgcaggc agccaatatc agccagcctg
     1141 acgccgataa gttacttgct gtatcgcgtg gtgaatttgt tgaggggatt agcgacccta
     1201 atgatccgaa atgggtcaag gggatccaga ctcgcgattc tgtgaaccag aaccagcatg
     1261 aatcggaacg gaacgaccaa aaagcggaac aaaacagccc aaatgcgtta caaaacgagc
     1321 cagaaacgaa acaatccgaa ccagtagcgc aacaggaacc ggaaaaagtc tgcaccgcct
     1381 gcggtcagag cggtggcggc aactaccctg attgtggcgc ggtgatggac gacgcaacat
     1441 accagaaaac attcgatgaa gagaatcagg ttgaagttca ggaaaatgat ccggaggaaa
     1501 tggaaggcgc tgaacatcca cacaaggaga atgctggcag cgctcaggac cacgccagcg
     1561 atagtaaaac tggcgagacg gcagatccct taattacggt gaatggtcat cacgaaatca
     1621 catccaccag caggacgtgt gaccatctaa tgatcgacct tgaaaccatg ggaaaaaatc
     1681 ctgatgcccc gatcatctca ataggtgcaa tatttttcga tccgcaaacc ggagatatgg
     1741 gacccgaatt tagtaagact atcgatctgg aaactgctgg cggagtcatt gatcgggaca
     1801 ccattaaatg gtggcttaag caatcacgcg aagcgca
//
LOCUS       DAJVUY010000301         1831 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.309, whole genome shotgun sequence.
ACCESSION   DAJVUY010000301 DAJVUY010000000
VERSION     DAJVUY010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.309"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(183..656)
                     /locus_tag="OQQ72_004243"
     CDS             complement(183..656)
                     /locus_tag="OQQ72_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS2013746.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
     gene            812..1825
                     /gene="intI1"
                     /locus_tag="OQQ72_004244"
     CDS             812..1825
                     /gene="intI1"
                     /locus_tag="OQQ72_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 integron integrase IntI1"
                     /protein_id="HCS2013747.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF
                     DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER
                     KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP
                     HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT
                     SER"
BASE COUNT          389 a          509 c          489 g          444 t
ORIGIN      
        1 tcctgcgaat atgtgagttt tgacctaatg agccacaaaa actcattttc gcccacgata
       61 atttttctac ttcctttctt tggaatgctc atttcaatat tcacataacg tcgctatcaa
      121 tcgcggaaaa ggcgtagtgc gcgaagcgaa cgaagctttt tgccgtcgat tgcatagctt
      181 tgttaaccct ttttccaaat ttgatagcaa tagttaatgt ttgaagtaaa gtgttgctca
      241 aaaacaactt cgaaggtatt tggaatactc gggaagaaaa catccccctc tggctcgatg
      301 tcgatcgtcg ataagtggag cgtagaggcc atgggtaatg tttctcggta aatttctccg
      361 ccaccagaca ctataacgtg accggtgaat tcagctagcc tgtccatggc ctcttcgatt
      421 gactgaaata caactacatt gtcatcattt gatgtccaac ctgagcgggt aacgaccgcg
      481 tatttcctat tggggagtgc gcccatagat tcaaacgtct tgcgacccac cagaagccac
      541 tgattgtagg tcaatgcttt aaaaagtagc tgctcccctt tcgcggacca gggtatgtct
      601 ggaccgcaac caatcacgcc gtttttcgct ttcgcagcca tcaatgatac tttcaaggtt
      661 ctcatcctgg gttaactttg ttttagggcg actgccctgc tgcgtaacat cgttgctgct
      721 ccataacatc aaacatcgac ccacggcgta acgcgcttgc tgcttggatg cccgaggcat
      781 agactgtaca aaaaaacagt cataacaagc catgaaaacc gccactgcgc cgttaccacc
      841 gctgcgttcg gtcaaggttc tggaccagtt gcgtgagcgc atacgctact tgcattacag
      901 tttacgaacc gaacaggctt atgtccactg ggttcgtgcc ttcatccgtt tccacggtgt
      961 gcgtcacccg gcaaccttgg gcagcagcga agtcgaggca tttctgtcct ggctggcgaa
     1021 cgagcgcaag gtttcggtct ccacgcatcg tcaggcattg gcggccttgc tgttcttcta
     1081 cggcaaggtg ctgtgcacgg atctgccctg gcttcaggag atcggaagac ctcggccgtc
     1141 gcggcgcttg ccggtggtgc tgaccccgga tgaagtggtt cgcatcctcg gttttctgga
     1201 aggcgagcat cgtttgttcg cccagcttct gtatggaacg ggcatgcgga tcagtgaggg
     1261 tttgcaactg cgggtcaagg atctggattt cgatcacggc acgatcatcg tgcgggaggg
     1321 caagggctcc aaggatcggg ccttgatgtt acccgagagc ttggcaccca gcctgcgcga
     1381 gcagctgtcg cgtgcacggg catggtggct gaaggaccag gccgagggcc gcagcggcgt
     1441 tgcgcttccc gacgcccttg agcggaagta tccgcgcgcc gggcattcct ggccgtggtt
     1501 ctgggttttt gcgcagcaca cgcattcgac cgatccacgg agcggtgtcg tgcgtcgcca
     1561 tcacatgtat gaccagacct ttcagcgcgc cttcaaacgt gccgtagaac aagcaggcat
     1621 cacgaagccc gccacaccgc acaccctccg ccactcgttc gcgacggcct tgctccgcag
     1681 cggttacgac attcgaaccg tgcaggatct gctcggccat tccgacgtct ctacgacgat
     1741 gatttacacg catgtgctga aagttggcgg tgccggagtg cgctcaccgc ttgatgcgct
     1801 gccgcccctc actagtgaga ggtagggcag c
//
LOCUS       DAJVUY010000302         1816 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.310, whole genome shotgun sequence.
ACCESSION   DAJVUY010000302 DAJVUY010000000
VERSION     DAJVUY010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.310"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(316..1464)
                     /locus_tag="OQQ72_004245"
     CDS             complement(316..1464)
                     /locus_tag="OQQ72_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013748.1"
                     /translation="MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG
                     VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRF
                     VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV
                     LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGS
                     LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWSIGRLADKFGRLLVLRVQVFVVI
                     LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS
                     LLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV"
BASE COUNT          574 a          464 c          395 g          383 t
ORIGIN      
        1 ggttggcgta gttattaaca acgttgccaa aaccccagac agtgataaaa gacatcagcg
       61 caatgttgta ccatcgcagc tgtttttcct gaacattccc agccatagac aaatccttcg
      121 ccaaaattat aggggcatct gtaaaacgag ggattatgcg cggcaaataa gaagtgcgga
      181 aatagcgaaa tgcaaaatta taacctgctg cacattttat ttttaaacga ataaaatttg
      241 gaataaagca agtcagatag aagaaacaaa aaagcagagt gtgaaacagt aagttcacac
      301 tctgcttgaa ttcatttaca cgtgagcaac gggtttcggc gtatgaccgg cgttgcgcag
      361 cagcatcagc aaatagataa acgatacgct ggcgatcatg ataaacaata aattatcgga
      421 gaaattctgc attagcatag cggtaaatga cgggccaagc agacttccca cagtatagct
      481 caacagtaag gcctggttca tcgccaccag ttgatgatgt tcaactttct cgcaagccca
      541 tgccatcgcc accggatata gcgtaaagcc agcggcaccg aggatgaata acgctggggc
      601 catcgccgcc tggctaagca tcgcgatact gccgagaatg acgacaaaga cctgaacacg
      661 caacaccagc agtcgaccaa acttatccgc cagacgtcca atcgaccatt gtccaaggat
      721 acccgcactg accagtaccg ccatccagaa accaatgctg gcattgctca cccctttgtg
      781 attgaggtac agcggcatca ggccatatag agatcccaga acgattcctg agataatgca
      841 gccattcacg ccaagccgcg cctgacggag ttttagcatt gacgtaattg acgtcgaatc
      901 atggttttca gcctgctgat tcagcacacg cgtaaacaac agcggtaaga tccctgccaa
      961 cgtcaaacct gtaacccacg gcaatacgga catcagctcg gttgaaactt tgctgaccag
     1021 taactggcct aaaaacgttc ccacgtaata aaccatcata tacgcagcaa gcaaacgccc
     1081 acggttacgt gacgtcccac tgcacatcag cgcgctctca acaaccaccc aaatcatggc
     1141 acagccgacg cccgcgacaa aacgccaagc caaccagctc cagaatccaa tcatcaggcc
     1201 aaggccggca cagccagcgg caaaaatgaa ggaggccaga taatagctgc ggttaaagcc
     1261 aatgcgctta atgacatacc ctgtcagcaa tgtaccgaca aggttgccgg taaaatagga
     1321 tgagctgaca acgcctacct gccatgtgga catgtgttcc tgggcgagcc aaagcggcac
     1381 gagtgtattt aacaccgcaa tcgccagagt caacaaaagc aggccagaca gcaaaagcat
     1441 gacaggccgg gtatacgtgg acatgaatta aaaccgtgag gaagttcaaa tttcatgcgc
     1501 atcatgccac cgccaaaaca ttgtcaatga gtgaaaatac gcgatatccc agcggcggta
     1561 ttatcgattt atattactca ttcataacgc taatgctgaa gagatgatta gtctcatctg
     1621 attgttttta ttgaactaac acaaatttca tacgcttcgt tcagtcgaaa aatttcatgg
     1681 tcacagcaaa ctcatatttc ccgtctatgc tttcagagca atgcatcgcg tctgatcgat
     1741 ttcagacgta ccactgactc tcgaaaggag aagaggatga ccaaaccgta tgttcgtctt
     1801 gataaaaatg atactg
//
LOCUS       DAJVUY010000303         1747 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.311, whole genome shotgun sequence.
ACCESSION   DAJVUY010000303 DAJVUY010000000
VERSION     DAJVUY010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.311"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..264
                     /locus_tag="OQQ72_004246"
     CDS             <1..264
                     /locus_tag="OQQ72_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="oxidoreductase, Fe-S subunit; terminal electron
                     transfer protein for the reduction of DMSO; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit B"
                     /protein_id="HCS2013749.1"
                     /translation="TKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRKKH
                     GDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            266..1129
                     /gene="dmsC"
                     /locus_tag="OQQ72_004247"
     CDS             266..1129
                     /gene="dmsC"
                     /locus_tag="OQQ72_004247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     DmsC"
                     /protein_id="HCS2013750.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(1164..>1747)
                     /locus_tag="OQQ72_004248"
     CDS             complement(1164..>1747)
                     /locus_tag="OQQ72_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS2013751.1"
                     /translation="LLVDHQAGLLSLVRDIEPDKFKNNVLALGDQAKYFNLPTILTTS
                     FETGPNGPLVPELKAQFPDAPYIAHPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEV
                     CVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRD
                     WHNDIEGLATLFSNHIPDYRNLMTCYDTLTKQK"
BASE COUNT          373 a          420 c          486 g          468 t
ORIGIN      
        1 acgaaaggcc atatgaccaa atgcgatggt tgttatgacc gtgttgcgga gggtaaaaag
       61 ccgatctgtg ttgaatcttg tccgctgcgg gcgctggatt tcggccctat cgacgagctg
      121 cgtaaaaaac atggcgatct ggcggccgtt gcgccgttgc cgcgagctca ctttaccaaa
      181 ccgaatattg tgatcaaacc caatgccaat agccgcccga ccggggatac cactggctat
      241 ctggcaaacc cgaaggaggt gtgagatggg aagtggatgg catgaatggc cgctgatgat
      301 cttcacggtc ttcgggcaat gtgtagcagg tggttttatc gttctggctt tggcgctgct
      361 caaaggcgac ctgcgagcag aagcccagca gcgtgttatc gcctgcatgt ttggtttatg
      421 ggtgctgatg ggcattggct ttatcgcctc tatgctccat cttggttcac caatgcgcgc
      481 ttttaactcg ctcaaccggg taggggcttc agcactcagt aacgaaatcg ccagcggttc
      541 gatctttttt gccgtaggcg gcatcggctg gttgctggca atgctgaaaa agctgtcacc
      601 ggcattgcgt acgctgtggc tgatagtgac gatggttctt ggcgtcatct ttgtctggat
      661 gatggtgcgt gtgtataaca gcattgatac cgttccgacc tggtacagca tctggacgcc
      721 gatgggcttc ttcctgacga tgtttatggg cggcccgtta ctgggttacc tgttgttgag
      781 tctggctggc gtcgatggct gggcgatgcg tctgctgcca gcaatttctg tactggcact
      841 ggtagtgagt ggcgtggtat cagtgatgca gggcgcagag ctggcgacta ttcatagttc
      901 tgtgcagcag gccgcagcgc tggtgccgga ctatggtgcg ctgatgtcct ggcggatcgt
      961 gcttttggcc gttgccctgt gcttgtggat tgcaccacag ctaaaaggtt atcagcctgc
     1021 ggttccgcta ctttctgtat cattcattct gcttctggca ggggaattaa tcggtcgcgg
     1081 cgtattctat ggtttgcata tgaccgtggg gatggccgtc gcaagctaat cataacaacc
     1141 ggggtttcgg ccccggttct cttttatttc tgcttcgtta acgtgtcata acaggtcatc
     1201 aaattacgat aatcaggaat gtggttagag aacaacgtcg ccagtccttc aatatcatta
     1261 tgccagtcgc gatgcagctc gcacgccacg ccgaaccatg tcatcaattg cgcaccagct
     1321 tgcgacatgc gatcccatgc cgaatgccgg gtaatttcat taaaggtccc tgacgcgtca
     1381 gtcacgacaa agacgtcaaa cccttcttca atggctgaaa gcgccgggaa tgccacgcaa
     1441 acttcggtta ccacaccggc aataattaac tgttttttac ctgtcgcttt gacagctttt
     1501 acaaaatctt cgttatccca ggcgttaata tttcccgggt gagcaatgta aggtgcatcg
     1561 gggaattgtg ctttcagttc tggaactaat gggccgttag gaccggtttc aaaactggtg
     1621 gtaagaatag ttggtaagtt gaaatactta gcctggtcac ccagcgccag cacgttattt
     1681 ttaaacttat cgggttcgat atcccgtaca agggaaagta aaccagcctg gtgatcaaca
     1741 agcaaaa
//
LOCUS       DAJVUY010000304         1737 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.312, whole genome shotgun sequence.
ACCESSION   DAJVUY010000304 DAJVUY010000000
VERSION     DAJVUY010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.312"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            68..808
                     /locus_tag="OQQ72_004249"
     CDS             68..808
                     /locus_tag="OQQ72_004249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS2013752.1"
                     /translation="MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVN
                     VRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTAST
                     SLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPL
                     ALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVTG
                     LNGKASSAKVHFYAINDFGGTIEGNASL"
     gene            843..1737
                     /locus_tag="OQQ72_004250"
                     /pseudo
     CDS             843..1737
                     /locus_tag="OQQ72_004250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414681.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
BASE COUNT          502 a          367 c          370 g          498 t
ORIGIN      
        1 gaatagtgtt aataatttct atttttatat tattccctgt tttaattaac tctgtcaggg
       61 atggtttatg ttttttaaca ccaaacatac aacagcttta tgcttcgtaa cctgtatggc
      121 ttttagttca tcgtctattg cggacattgt catttcgggt actcgcgtaa tatataaaag
      181 cgatcaaaaa agtgtcaacg tacgtctgga aaataaaggg aataacccgt tgcttgtcca
      241 gagttggtta gatactggcg atgacaacgc tgagcctggc agtattacag tcccttttac
      301 tgccacgccg ccagtatcgc gtattgatgc caaacgtggg caaacaatca aattaatgta
      361 cacagccagc acctcactgc ctaaagacag agagagcgtg ttctggttta acgtactgga
      421 agttccacca aaaccagatg cagaaaaggt cgcgaatcaa agtctgctgc aactggcatt
      481 tcgcacacgt ataaaacttt tctatcgccc ggatggattg aagggaaatc cctctgaagc
      541 cccgttagcc ctgaagtggt tctggtcagg ttcagaaggt aaggcgtcat tgcgagtgac
      601 caatccaacc ccttactacg tctcttttag cagtggtgat ttagaagcta gcggtaaacg
      661 ctatccgatt gatgtgaaaa tgattgcacc atttagtgat gaggtcatga aagtcactgg
      721 ccttaatggc aaagcaagtt ctgcaaaagt acatttttac gccattaatg attttggtgg
      781 caccattgaa ggtaatgcca gtctgtaatc aggcaaggat ataattccgc aggaagcata
      841 acgtgactat aaaaccaact aaaaattatc ataatcatct gacccgtatc gctacgtttt
      901 gcgcgctgct gtattgcaat agtgctttct gtgctgaact tgttgaatat gaccatacct
      961 tcctgatggg gcagaatgcc tcaaatattg atctcagccg gtatagtgaa ggtaaccctg
     1021 ctataccggg tatgtacgac gtcagtgttt atgtcaacga tcaacctatt attaaccaaa
     1081 gcattacatt tattgaaatt gaaggaaaaa aaacgcacaa gcctgtatca cacttaagaa
     1141 tttattgcag tttcatataa attctcccga tataaataac gaaaaagccg ttctgcttgc
     1201 cagggatgaa acactcggca attgccttaa tttgacggaa attattcctc aggcttctgt
     1261 tcgttatgac gttaacgagc aacgtctgga tatagacgtt cctcaggcat gggtaatgaa
     1321 aaattaccaa aactatgttg atccatcgtt atgggaaaat ggcattaatg cggccatgtt
     1381 gtcatacaac ctcaacggat atcatagtga aactcctggt cgaagaaatg acagcattta
     1441 tgctgctttt aacggtggga tgaatttagg tgcatggcga ctgcgtgcct caggcaacta
     1501 caactggatg accgattctg gcagtaatta tgattttaag aatcggtata tacagcgtga
     1561 tatcgcctcg ctgcgttctc aactcattct tggtgagtct tatacaacgg gcgaaacctt
     1621 tgattctgtc agtatccgcg gcattcgttt atacagcgac agccgcatgt tgcctccgac
     1681 attagcgagt tttgcgccta tcattcatgg cgttgctaat accaacgcca aagtcac
//
LOCUS       DAJVUY010000305         1715 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.313, whole genome shotgun sequence.
ACCESSION   DAJVUY010000305 DAJVUY010000000
VERSION     DAJVUY010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.313"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            122..1399
                     /locus_tag="OQQ72_004251"
     CDS             122..1399
                     /locus_tag="OQQ72_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013753.1"
                     /translation="MNKIKNYRWHMIALVCFITVINYLDRTALGIAAPTIMETTGITK
                     EQYSWIVSAFQLAYTLGQPVMGFFIDTVGLKLSFAICAAIWGLATMGHALTGTWSGLA
                     FMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPPLIAWCIMF
                     HSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHLKTDKKEKT
                     SIKHILSQRNFWGIGIARFLADPAWGTINFWVPIFFVETLHFSLKEIAMFVWLPFLLG
                     DLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMRIGLVSIVENPYIAVLLISIG
                     AFSHQCLSTVAATLGGDLFKKDEVATAVGMAGACAWSGQLIFNLFIGAFVHIIGFAPF
                     FIALAFFDIIGAIALWTLIKVKDEEPQVQLATH"
BASE COUNT          447 a          367 c          373 g          528 t
ORIGIN      
        1 ttttaaaggg agaaatttac acacaataat tttcaatatt tcctctgtac ctgattttta
       61 ttacctatta cacggaaata ccaacaacca gggtttatta atataattaa aaggtttaaa
      121 catgaataaa ataaagaatt accggtggca tatgattgcc ctcgtatgct ttatcactgt
      181 aatcaattat ctggacagaa cggcgttagg tattgcggct ccaacgatta tggagacaac
      241 cggaataact aaagagcaat attcatggat tgtcagtgca ttccagttgg cctatacatt
      301 agggcaaccg gtaatgggct tctttattga taccgtgggt ctgaagttaa gttttgcgat
      361 atgtgccgca atttggggcc tggcgacaat gggccatgca ctaaccggaa cgtggtctgg
      421 tctggcattt atgcgcgccc tgatgggttt cagcgaagcg tcggcaattc cggcgggtgt
      481 aaaaaccgca tcaacatggt tcccggcaaa agagcgtggc gtggcgacag gtgttttcaa
      541 tatgggcacc tcactcggcg cgatgcttgc tccaccgttg attgcctggt gcattatgtt
      601 tcatagctgg caatttgcgt ttattgtttc aggtagtctt gctttgctcg cggctttatt
      661 ttggttcttt tgttataaag atccgaaaga tgccaaacgc ctttctgatg aagagcgcca
      721 ctatattgaa tcagggcaag aacagcatct taaaacagat aagaaagaaa aaacgtcaat
      781 caagcatatc ctcagccaac gtaatttctg ggggattggc atcgcgcgtt ttctcgcaga
      841 cccggcatgg ggaaccatta acttctgggt gccgattttc ttcgtcgaaa cgctgcattt
      901 tagcctgaaa gaaattgcca tgttcgtctg gctgcctttc ctgctgggcg atctcggctg
      961 tttagccagt ggttttgtcg cgaagttctt ccacgatcgc ggcgtgagtt taattaactc
     1021 acgaagaatt accttcacta ttgcagccgt cattatgatg aggattggcc tggtgagtat
     1081 tgtcgaaaat ccctacattg ccgtattact gattagtatt ggcgcgttct cgcatcaatg
     1141 tctttctact gtagcagcaa ctctgggtgg cgatctgttc aaaaaagacg aagtagctac
     1201 cgcagtgggt atggcaggag cctgtgcgtg gagcggtcag ttgattttca acctgttcat
     1261 cggggcattc gttcacatta tcggcttcgc gccgttcttt attgccctgg ctttctttga
     1321 cattattggt gctattgcgt tgtggacgct tatcaaagtt aaagatgaag aaccacaagt
     1381 acagttagct acccactaat tattttaaat aaaaacgcta taattgaggt tatggcgttt
     1441 ttaaagaagc ttgagttatc gaaccccgct taccaacgcg ttgtcagtca tctcccccct
     1501 ccctggtgca tcgttatatc cgtgatgagc gatttttgat attaatatct ttcaccatcc
     1561 gctattttca ccacttcaga aaacaaactt atttttatta atatcaattc tttttctttg
     1621 aacattcaac tgcgatattt gtaaaaacat taaacaggca acaataaaat gacattacca
     1681 acaactattt attcattccc cgcatattta cctcg
//
LOCUS       DAJVUY010000306         1704 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.314, whole genome shotgun sequence.
ACCESSION   DAJVUY010000306 DAJVUY010000000
VERSION     DAJVUY010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.314"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(855..1328)
                     /locus_tag="OQQ72_004252"
                     /pseudo
     CDS             complement(855..1328)
                     /locus_tag="OQQ72_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708890.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase
                     domain-containing protein"
     gene            complement(1256..1622)
                     /locus_tag="OQQ72_004253"
                     /pseudo
     CDS             complement(1256..1622)
                     /locus_tag="OQQ72_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          379 a          475 c          412 g          438 t
ORIGIN      
        1 tcgtcaaaaa aaatcatctt cgtgaagttt tacgacatag tggaggagtt tgcttctttg
       61 aggtgcaggt tttcgtttgc gtggtttagc tgaacgggcc atataactac ctgaaagaca
      121 atgatattgt ctgtttttat aacggtaatc acaggccatg acaagccgca gccgtcaggc
      181 cgcctactcg ggtcggttta gaacgcttat ttagtaccag atcttactta taataaaggg
      241 gcttggcagt ttggataaac tattgtcctt attccactaa tacaaacttt ttgtaaagta
      301 tattaaatat acttcatttc atactgaaat ccccggaagt attcaatcaa acaattacac
      361 cataaaagga agagggggcc ccaattaagt tgtcaagcat gtttactgcg caatcgcttg
      421 gtgctccgtc cctgtacccc gcattggtac tctggcgctc atggggcttc cacttgcgct
      481 tctcccttca catcggggtg acaggtccac gttccccaca agagcctgaa tcgacttcac
      541 gccgctttta tgccggatgc cgcgcaggca gtaaacatat cccacaggaa cgactccacc
      601 attgttttga catcatctat atgctttcga cacatcatca gcggttcact ttcgttcgtc
      661 tcttcgaacc atacctgatc ggctcacgtc cgaccttttc ccatctcgct caccaccaca
      721 tctcttaaat gcagcagcag tggatggttt ggtgcctgcg cctgcacgcc gacaccgagg
      781 ggccttccct catctcttgt gccgcatggc tgcacaggga ctcacgtccc caggacgcgc
      841 cttcgtggca cacagtcatc ggcatagcaa cagtaagcaa cggcaggttt ccattgccag
      901 ttttctttga cagcagtact tcggcctcgc tggatactgt gattccagta ccagcgatcc
      961 tttctggctt ttccactcag gtagcgttta ttcagatact ggtcgaactc attcagtatg
     1021 atgttcgaca gcaacggcga gatcacaccg ccctgtggca tactttcact gaccgcccgg
     1081 aagagaccaa catcaacacg gcgttttcca cagcagtctc ataaaacgtg catcactgat
     1141 cctgcggcag acggctttca tcagcagccg gtgatgtact gtgtcgaagt agctggacag
     1201 gtcaccttca ataacccggc gccccgtgtt tccccgcagt cggtgagctg taatagtacg
     1261 tgatgtctcc cgcccacttc tggttcgggc cactggcgta aaaatcctgc gtcagcagat
     1321 tttctgatac aggcaggccg tgtgcacggt aactgatcgg gctgaacttc tgggaggctt
     1381 ttgcgctcag ttcctgacgg cgcagactgg ctgccacggt ttttacgtta aagtggtaac
     1441 cagagcacac agttcatccg tcaggcgtgg ggcaccgtaa cgctggactg ggtaaaagcc
     1501 ttgcggacaa cgctgtcgca gtgctgacgg aactgctgac gtgtgtttat ccttgtccgc
     1561 cgctgacacc acgtatacca gccgctgcgg gccacccgga gtacgcggca cattgccttg
     1621 atgacggttt acgcggtcgc ctgcggcaac ggctttccgg ctgacggtag tgtggacctt
     1681 tttaccccgg agaacaccgg caag
//
LOCUS       DAJVUY010000307         1671 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.315, whole genome shotgun sequence.
ACCESSION   DAJVUY010000307 DAJVUY010000000
VERSION     DAJVUY010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.315"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            17..1272
                     /locus_tag="OQQ72_004254"
                     /pseudo
     CDS             17..1272
                     /locus_tag="OQQ72_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YccE family protein"
BASE COUNT          547 a          262 c          341 g          521 t
ORIGIN      
        1 tttatagacg ctatatatgg gtagtaatat acatggaatt agttgcactg caaataatta
       61 tttgaaacag gcctggaacg atataaaaaa tgagtacgaa aaaaatcaaa catattcaat
      121 cacgcttttt gaaaacacac tggtgtgttt tatgcggtta tacaatgaac tcagacgtaa
      181 agtaaatgaa gaggatactc catgtctgga atgtgaatca ctagaaaaag aatttgagga
      241 aatgcagaat gataatgatc tatcattatt tatgagaaca ttgcgtacta atgatacaca
      301 aatttattca gggtttcagg aggtattaca tatactatac aatatgttca aaatgttgat
      361 attgttagag tgtccttgcc gggcagaggt tcagagtcta tcacagattt taaaggttat
      421 tattggtatg gctttatgga atatattgaa aacattactg cgtgtgatga tgttttttct
      481 gagtattgtt tagatgatga aaatatgagt atccagccag aacagataaa tacgccggga
      541 atatctgatt tagatactgg tattgatttg tctggcatat cttttattca gagtgaaatt
      601 aataaaacat atggattaaa atacgctcca gtagatggcg atggatattg tctgttaaga
      661 gctatactgg ttttaaaaga acatgagtat tcatgggcgc tgggcggcca taagacgcaa
      721 aagcaagtat acgaagagtt tattaaaatt gttgataaac aaacgatcga ggctcttgtt
      781 gatacggcat tctataatct cagggaagat gtaaagacgt tatttggcgt taatctacaa
      841 tctgacaaca aaattcaggg gcagggtggt tttttatcat ggagtttttt gtcttttaaa
      901 aaagaattta ttgatagttg cttgaatgac aaaaaatgca tactgcattt acccgaattt
      961 atatttaatg ataacaaggt acgccttgtt ttagacaccg acccagagca gagggttaat
     1021 gaggtgaaaa atttcctcac tgctctttca gatagcattt gctcattatt tattgttaat
     1081 agtaatatgg catcaatctc cttggggaat gaatcctttt caacagatga cgaccttgag
     1141 tatgtttatt taataaacac tggcaatcat tatgatgttt acctccctcc tgaacttttt
     1201 gctcaggctt ataagttaaa aaataaggaa atgaatgcgc aactcgacta tttaaatcgt
     1261 tatgcaattt aatggcaaag gcatatgcta aaaaccattg ttattagtct cacacttttt
     1321 tattggtaaa tattgtctct gtattggtaa cgccgcagat attctgttta gccacaggtg
     1381 caattatcag cggcgtacgc gaggcagggg ctaatcaggc atagtttgcg tcaaaccttg
     1441 cctgtttttg aagatgtata tagaaaaaca ggcgttcaac aagccatttt gcgaacctgt
     1501 tcccggaaaa aagtcatatt tctgtcacac tctttagtga ttgataacaa aagaggtgcc
     1561 aggaatgaac aaaacgctaa tcgccgcagc tgtggcaggg atagttttac tcgcttcaaa
     1621 cgctcaggca caaaccgtac cggaaggcta tcagctacag caagtgctca t
//
LOCUS       DAJVUY010000308         1655 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.316, whole genome shotgun sequence.
ACCESSION   DAJVUY010000308 DAJVUY010000000
VERSION     DAJVUY010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.316"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>1655
                     /gene="rhsB"
                     /locus_tag="OQQ72_004255"
     CDS             <1..>1655
                     /gene="rhsB"
                     /locus_tag="OQQ72_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhs element protein RhsB"
                     /protein_id="HCS2013754.1"
                     /translation="EHADGSVTQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLITRIT
                     TPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDIIRYRYDNPHS
                     DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYR
                     AYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKAIRTTQGEL
                     TRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSE
                     DEGLVTHWHYDEADRLTHRTVNGETAEQWQYDKRGWLTDISHLSEGHRVTVHYRYDEK
                     GRLTGERQTVHHPQPEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLAGM
                     KLGDTPLVDFTRDRLHRETLRRFGRYELTTAYTPAGQLQSQHLNSLQYDRDYTWNDNG
                     ELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTL
                     SMWPDNRIARDAHYLYRYDRYGRLTEKTDLIPEGGIRTDDERT"
BASE COUNT          397 a          520 c          488 g          250 t
ORIGIN      
        1 gaacacgcgg acggcagcgt cacgcagagt cagtttgacg ccgtgggcag gctcaggaca
       61 cagacggatg ccgcaggccg gacaacagaa tacagcccgg atgtggtgac gggcctcatc
      121 acgcgcatca ccacgccgga tggcagggca tcggcgtttt actataacca ccacagccag
      181 ttaacgtcag ccaccgggcc tgacgggctg gaaatacgcc gggaatatga tgaatggggc
      241 cgtctgattc aggaaactgc ccctgacggc gatatcatcc gctaccgtta tgataatcca
      301 cacagtgact taccctgcgc aacggaagat gccaccggta gccggaaaac catgacgtgg
      361 agccgttacg gtcagttgct gagcttcacc gactgttccg gttatgtaac ccgttatgac
      421 catgaccgct tcgggcagat gacggcggtg caccgcgagg aagggctgag tcagtaccgc
      481 gcatacgaca gccgtggaca gttaattgcc gtgaaagaca cgcagggcca tgaaacgcgg
      541 tatgaataca acgccgccgg tgacctgacc gccgtcattg ccccggacgg cagcagaaac
      601 gggacacagt acgatgcgtg gggaaaggcc atccgtacca cgcagggcga gctgacgcgc
      661 agtatggaat acgatgctgc aggacgggtc atccgcctga ccagtgaaaa cggcagccac
      721 accaccttcc gttacgatgt actcgaccgg ctgatacagg aaaccggctt tgacggccgc
      781 acacagcgtt atcaccacga cctgaccggc aaacttatcc gcagcgagga tgaggggctg
      841 gtcacccact ggcactatga cgaagcagac cgcctcacgc accgcaccgt gaatggcgaa
      901 accgcagagc agtggcagta tgacaaacgt ggctggctga cagacatcag ccatctcagc
      961 gaagggcacc gggtgacggt gcattacagg tatgatgaga aaggccggct gaccggtgag
     1021 cgccagacgg tgcatcaccc gcagccggaa gcactgctct ggcagcatga gaccagacat
     1081 gcgtacaacg cgcagggact ggcgaaccgc tgtataccgg acagcctgcc cgccgtggaa
     1141 tggctgacct acggcagcgg ctggctggca ggtatgaagc tcggcgacac accgctggtg
     1201 gatttcaccc gcgaccgcct gcaccgggaa acgctgcgcc gcttcggccg ctatgaactc
     1261 accaccgctt atacccctgc cgggcagtta cagagccagc acctgaacag cctgcagtat
     1321 gaccgcgatt acacctggaa cgacaacggc gaactcatcc gcatcagcag cccgcgccag
     1381 acccggagtt acagctacag caccaccggc aggctgaccg gcgttcacac caccgcagcg
     1441 aaccttgata tccgcatccc gtatgccaca gacccggcag gtaaccgcct gcccgacccg
     1501 gagctgcatc cggacagcac cctcagcatg tggccggata accgtatcgc ccgtgacgcg
     1561 cactatcttt accggtatga ccgttacggc aggctgacgg agaaaaccga cctcatcccg
     1621 gaagggggta tccgtacgga tgatgagcgc accca
//
LOCUS       DAJVUY010000309         1648 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.317, whole genome shotgun sequence.
ACCESSION   DAJVUY010000309 DAJVUY010000000
VERSION     DAJVUY010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.317"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..950)
                     /gene="corA"
                     /locus_tag="OQQ72_004256"
     CDS             complement(<1..950)
                     /gene="corA"
                     /locus_tag="OQQ72_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HCS2013755.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
     gene            1320..>1648
                     /locus_tag="OQQ72_004257"
     CDS             1320..>1648
                     /locus_tag="OQQ72_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013756.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIENGQ"
BASE COUNT          426 a          427 c          412 g          383 t
ORIGIN      
        1 tacaaccagt tcttccgctt aaagtacaga tacggtgcca ggcccgcgag gatcataaag
       61 ataatcgcgc cagggtagcc gaagctccac ttcagttctg gcataaactc aaagttcatg
      121 ccatagctgg aagcaacgag cgtcggcggc aggaatacca cggataccac cgagaagatt
      181 ttgatgatgc ggttctgctc gatgttgata aaacccatcg ccgcctgcat caggaagttc
      241 accttctgga acagagattc gttatgcggc agcagggatt cgatatctcg caggatttca
      301 cgcgcctgct ccagttgtcc acccggtaag cgtgctttac gtaccaggaa gttgagcgcg
      361 cgctgggtat ccatcagaca caggcgtact ttccagccga tatcttccag ttccgccagc
      421 gtggagagcg cctcatcgta ctcatcgccc tgatgccctt ccataatcac ccggctcaac
      481 tgctccaggt cgctatagat attttcaatt tcatctgcca actgttcgat tttggtttcg
      541 aacagatcca gcagcagctc gtaggcgtta ccgtctacca tcgactggct acgggcacgc
      601 atacgataca gacgaaaagc gggcagttca cgctcacgca gagtaaacag acgaccatca
      661 cggatggtaa atgccacagt ggagttaccg gcgtgatctt ccgcatcttc aaagaagaag
      721 aaggagtgaa tatgcaggcc gtcgtcgtct tcaaagaaac gtgccgatgc ttcgatgtct
      781 tccagttccg ggcgggttgc caggctctgg ccaagttcag attgtacacg cagtcgctcg
      841 tcgtcgtccg gttcgacaag atcaatccat actgcattta caaggggttg tgactcttcg
      901 acttccagcc gggtcagtcg gttattttcc agttgaaatg cgctcagcat gaccgggact
      961 cccaatgctt aaaatatcgg acagttcggt gggcacacag aaacaaattg ggtttcagac
     1021 cattaaacag cctgactcag cgcgacggga aaaattgagg tcgctgacaa ccgctaaggc
     1081 tatcagcaaa aagggatagc cttaggagtt gatcctggat gacaggatag tgagccagta
     1141 tctactgggt gtgtccaagg cgaatgtcct cttagaatga tcgtgcgcgc atgttacgcc
     1201 agcaaaattt tgccgtcaac acgcaacaga acaccacaga acaatagttg aacttcgcgc
     1261 tttttggtac tcctcaaggt cgctaacagg ataaaaaaat cccacatcca ggacctataa
     1321 tggcgcatcg gctactcatt ggtaaaggaa tgatcacctt gaatctcaaa cggatttttc
     1381 tcaccctcac cttacttccc ttgttttctg ttgccgctga tgattgcgca ctctcagatc
     1441 cgacgctgac cgtacaggcg tataccgtta atcctcaaac agagcgggtg aaaatgtact
     1501 ggcaaaaagc caatggcgaa gcgtggggaa cgttacatgc tctgctggcg gatattaata
     1561 gtcagggtca ggtgcagatg gcgatgaacg gcggcatcta tgatgaaagc tatgcgccgc
     1621 tcggtttgta catcgaaaac ggtcagca
//
LOCUS       DAJVUY010000310         1648 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.318, whole genome shotgun sequence.
ACCESSION   DAJVUY010000310 DAJVUY010000000
VERSION     DAJVUY010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.318"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..137
                     /locus_tag="OQQ72_004258"
     CDS             <1..137
                     /locus_tag="OQQ72_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013757.1"
                     /translation="RTGEISMSHKVSVGGGSQVNGALGIGVQNALGGIQLLSGITIQV
                     "
     gene            158..679
                     /locus_tag="OQQ72_004259"
     CDS             158..679
                     /locus_tag="OQQ72_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013758.1"
                     /translation="MDVYANGQHVFRFQNGVAIALKNIQAGNAKKFTLSSANNSTKNA
                     AFYLWGNPSRPVVAELGDDSGWHFYSQRNTDGSITFAVNGQVIPLNYGNFDARYKHRT
                     EGVQDVRYGYEMYYNPGSNTVSWTFRSPSGHGLSGISISDTGRNSADNVNGVYYRPLQ
                     KLINGIWYNVASI"
     gene            682..1227
                     /locus_tag="OQQ72_004260"
     CDS             682..1227
                     /locus_tag="OQQ72_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2013759.1"
                     /translation="MLHLKNITAGNPKTAEQYQLTKQYDVTWLFSEDGKNWYEEQKNF
                     ASDTIKMVYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFV
                     FDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFS
                     AITDKSSYNAIEWPVSPEGSS"
     gene            1251..>1648
                     /locus_tag="OQQ72_004261"
     CDS             1251..>1648
                     /locus_tag="OQQ72_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS2013760.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLNDFLTAPDEGDLKPDV
                     VKRFEEMVAQAQQSAGAAAGNAQQTAQDVAA"
BASE COUNT          445 a          362 c          458 g          383 t
ORIGIN      
        1 tgcggacggg tgaaatatcc atgtcgcata aagtgtctgt tggcggtggt tcgcaggtca
       61 atggtgcgct gggtatcggc gttcagaacg ccctgggggg aattcaattg ctttcgggga
      121 taacgataca ggtataaaac aaaacggcga cggcattctg gatgtttatg cgaatggaca
      181 gcatgtattt cgtttccaga atggtgtggc gatagcgtta aaaaatattc aggccggaaa
      241 tgctaaaaaa ttcacgttat ccagcgccaa caactccacg aaaaatgcag cgttttattt
      301 gtggggtaat ccatccaggc ctgttgttgc agagcttggt gatgattccg gctggcattt
      361 ctacagccag agaaataccg atggtagtat cacattcgct gtaaacggac aggtaattcc
      421 gttaaattac ggaaacttcg atgcccgcta taaacatcga actgaggggg tacaggatgt
      481 gcggtatggt tatgaaatgt attacaaccc tggcagcaac accgtttcat ggacgtttcg
      541 ctcaccttcg ggacacgggt tgtcagggat atcgatatcg gataccggcc gtaactcagc
      601 ggataacgtc aacggtgtgt attaccgacc gctgcaaaaa ctgattaatg gcatctggta
      661 taacgtagcg agtatttaac aatgttgcat ttaaaaaata ttacggcagg taatccgaaa
      721 accgcggaac aatatcagct gacaaaacag tatgatgtca cctggctttt ttcggaagac
      781 ggcaaaaact ggtatgaaga acagaagaac tttgccagtg acaccataaa aatggtttac
      841 accggagacg ggcgcgtggt gtgggtcggt aaggatgtga caggcattga accccgtaac
      901 gccagtgtta ttgaagttcc tgatattacc gccaaccgcc gcattaccgc gccgggttac
      961 tggttttacc gcaatgatga atttgtcttt gactacagac tcaaagcgga agatgagcgt
     1021 gatgcccttc tggctcaggt cagtgcccgg acaggggaat gggaagaaga cctgctgctg
     1081 gggctaatca gcgacgaaga ccgggaaaaa ctgaaagcgt accgtattta cgcgaaatcg
     1141 ctgcaggcga tggatttcag cgccatcact gataaatcct catacaacgc cattgaatgg
     1201 cccgtctctc cggaaggttc ttcctgattt aatttatcgc gagaaaaact atgtctgtag
     1261 tgatatcagg tgcgctgact gatggcgcag gcatccccat gtccggatgc cagattattc
     1321 tgaaatcccg tgtaaacacc tcagaagtgg tgatgcgtac cagggctgat gtagtgaccg
     1381 gaaataacgg tgaatattcg tttgaggcac aggtcggaaa atattgcgtg tatctgaaac
     1441 gggactggcg cgacgagtac tgtgttggcg acattgctgt atacgacgac tcaaagcccg
     1501 gcacgctgaa tgactttctg actgcccccg atgaaggcga cctgaagccg gatgtcgtca
     1561 aacgctttga ggaaatggtg gcgcaggcgc agcagagcgc cggggccgca gccggaaacg
     1621 cacagcagac ggcgcaggat gtggcggc
//
LOCUS       DAJVUY010000311         1575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.319, whole genome shotgun sequence.
ACCESSION   DAJVUY010000311 DAJVUY010000000
VERSION     DAJVUY010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.319"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>1575
                     /locus_tag="OQQ72_004262"
     CDS             <1..>1575
                     /locus_tag="OQQ72_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS2013761.1"
                     /translation="NNGSQVNVTDSSLVSDTIGLTNGSSLNIGANGVVATDHLTVDSY
                     STVNLTESTGWNNYSNLYTNTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHN
                     GNVISGVFDINSSDYVLNADLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNG
                     TELDNSSVDNVVAATGNYKVRIDNATGAGTIADYKDKELIRVNDANTNATFSAANKAD
                     LGAYTYQAEQRGNTVVLQQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGL
                     ADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGD
                     MNDRSGQVDQDSQTAYIYSSAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNS
                     DAWGFGLKAGYDFKLGDAGYETPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELG
                     VDAGYTFTYSEDQALTPYFKLAYVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSF
                     TKNFSAYTDANYLGGG"
BASE COUNT          409 a          378 c          384 g          404 t
ORIGIN      
        1 aaataatggc tctcaggtaa atgttactga ttcctctctg gtatcagata ccattggttt
       61 aaccaacggt tcttcactga atattggtgc aaatggcgtg gttgctacag accacctgac
      121 tgttgatagc tacagtaccg ttaatttaac cgaatctacc ggttggaata attattctaa
      181 tctgtatacc aatactatca ctgtgactaa cggtggtgtg ctggatgtga atgttgatca
      241 gttcgatact gaagctttcc gtactgataa actggaactg accagcggca acattgctga
      301 ccataatggc aacgtaattt ctggtgtgtt cgacatcaac agcagcgatt acgttctgaa
      361 cgctgatctg gtgaacgacc gtacgtggga tacttccaag tctaactacg gttacggtat
      421 tgttgctatg aactctgatg gtcacctgac tatcaatggt aacggcgacg tagacaacgg
      481 tactgaactg gataacagct ctgttgataa cgttgttgct gcaaccggta actacaaagt
      541 tcgtatcgac aacgcaactg gcgctggcac tatcgctgat tacaaagata aagaacttat
      601 tcgggtaaac gacgctaaca ccaacgcgac cttctctgct gctaacaaag ctgacctggg
      661 tgcatacacc tatcaggctg aacagcgcgg taacaccgtt gttctgcaac agatggagct
      721 gaccgactac gctaacatgg cgctgagcat cccgtctgcg aacaccaata tctggaacct
      781 ggaacaagac accgttggta ctcgtctgac caactctcgt catggcctgg ctgataacgg
      841 cggcgcatgg gtaagctact tcggtggtaa cttcaacggc gacaacggca ccatcaacta
      901 tgatcaggat gttaacggca tcatggtcgg tgttgatacc aaaattgacg gtaacaacgc
      961 taagtggatc gtcggtgcgg ctgcaggctt cgctaaaggt gacatgaatg accgttctgg
     1021 tcaggtggat caagacagcc agactgccta catctactct tctgctcact tcgcgaacaa
     1081 cgtctttgtt gatggtagct tgagctactc tcacttcaac aacgacctgt ctgcaaccat
     1141 gagcaacggt acttacgttg acggtagcac caactctgac gcgtggggct tcggtttgaa
     1201 agccggttac gacttcaaac tgggtgatgc tggttacgag actccttacg gcagcgtttc
     1261 tggtctgttc cagtctggtg atgactacca gctgagcaac gacatgaaag ttgacggtca
     1321 gtcttacgac agcatgcgtt atgaactggg tgtagatgca ggttatacct tcacctacag
     1381 cgaagatcag gctctgactc cgtacttcaa actggcttac gtctacgacg actcaaacaa
     1441 cgataacgat gtgaacggtg attccatcga taacggtact gaagggtctg cggtacgtgt
     1501 tggtctgggt actcagttca gcttcaccaa gaacttcagc gcctataccg atgctaacta
     1561 cctcggtggt ggtga
//
LOCUS       DAJVUY010000312         1575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.320, whole genome shotgun sequence.
ACCESSION   DAJVUY010000312 DAJVUY010000000
VERSION     DAJVUY010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.320"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(59..481)
                     /locus_tag="OQQ72_004263"
     CDS             complement(59..481)
                     /locus_tag="OQQ72_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013762.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
     gene            complement(465..692)
                     /locus_tag="OQQ72_004264"
     CDS             complement(465..692)
                     /locus_tag="OQQ72_004264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS2013763.1"
                     /translation="MLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQE
                     ASGGELQYDPKVYDEYRKAKRPGKVIHENQA"
     gene            769..1176
                     /locus_tag="OQQ72_004265"
     CDS             769..1176
                     /locus_tag="OQQ72_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013764.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
     gene            1380..1532
                     /locus_tag="OQQ72_004266"
     CDS             1380..1532
                     /locus_tag="OQQ72_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS2013765.1"
                     /translation="MDTIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTEAGARRW
                     LAKNTS"
BASE COUNT          445 a          408 c          326 g          396 t
ORIGIN      
        1 tccggatata atctgtgatt ccccaatcaa cagaaccaga ggaggttcgg cataaacatc
       61 aatgcacaac gacagaatcg tcggacgacc caccaccgct gaaatgtgct ttccggtaaa
      121 cggcctgaac tgcgtcatca tgcgcatcaa ttgccgtact caacgcttcc tgcgccgcca
      181 gtaatgcacg gcgttccagg gtatcgaaga tacagagtcg gtgacgcagc tcacgcggaa
      241 gaattgccag aaccgcaggg atcagtttct gaattttctc cctttgcgct ttcgtttcac
      301 ctttcaacca acggtgatag atattctgct gattgttcca gtccttgcct ggtaccagag
      361 gcaattcgcc gcccccctgc cgcagatatt cttcagtaat tgcgttagcg acccacgcct
      421 gccctttttc ggctgccagg gctaacagca ctgattcgat gtgctcatgc ctgattttca
      481 tgaatcacct tcccaggtcg ttttgcctta cgatattcgt cataaacttt ggggtcgtac
      541 tgaagttccc cgccagatgc ctcttgcagg cgcatcgcgc ggccttcagg aaccagttcc
      601 ccccatgcag caatgcttgc cagcctaact cctgcggcat tggcaagctt tgttttgctg
      661 ccaaaaaacg ctatagcatc aattttcaac atatcgagct ccttagattt tcctaaggaa
      721 actagatcgt agagaaacct aagtcaagaa agattagaat tccctaatat gaaaaacgaa
      781 accttcggtg ctcgcctctt acataggcgt aaaaaattaa aactgtctca ggccgcatta
      841 ggtaagctgg tcaaagtggc tcacgtaaca atttctcaat gggaaagaga tgaaacacag
      901 ccggcgggga aaagattatt cgcactgagc caagcgcttc agtgctcacc gacttggctt
      961 ctttttgggg atgaagataa acaaccaggc gaaccgatcc cggataatca gccagccatt
     1021 ctgacagaag atcaaaaaga gttacttcaa ctgttcgacg cactgcctga gtcagagcaa
     1081 aaggccctgt tgtcagagat gcgtgctcga gttgaaaatt tcaacaaact ttttgaagaa
     1141 ctactcaaag ctcgcaaaag aagcgcaaac aaataatccc cttttttctc cacaccctgt
     1201 aataaaaagc acaaactttc aaacacttgt gttttttaca tcaaaaaaaa cttaggtttt
     1261 tatacataaa atcttgactc cacgtcttag gttattctaa atttcattca tcaagacacc
     1321 gcacggtgtt ctcagcaaac agttccacta ccccggcgtt aaggggaaat gaggtcagca
     1381 tggatactat cgatcttggc aacaacgaat ccctagtgtg tggcgtgttt cccaatcagg
     1441 acggcacatt caccgccatg acgtatacca aaagcaaaac gtttaaaacc gaagctggcg
     1501 cacgtcgctg gcttgccaaa aataccagct aatccattta ttggattaat tcaatattct
     1561 cgctgtagag gtata
//
LOCUS       DAJVUY010000313         1574 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.321, whole genome shotgun sequence.
ACCESSION   DAJVUY010000313 DAJVUY010000000
VERSION     DAJVUY010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.321"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..91
                     /locus_tag="OQQ72_004267"
     CDS             <1..91
                     /locus_tag="OQQ72_004267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YoaK family small membrane protein"
                     /protein_id="HCS2013766.1"
                     /translation="GIIFPVVIFITAVVFLAWFFIGGYAAPGA"
     gene            94..168
                     /gene="yoaJ"
                     /locus_tag="OQQ72_004268"
     CDS             94..168
                     /gene="yoaJ"
                     /locus_tag="OQQ72_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YoaJ"
                     /protein_id="HCS2013767.1"
                     /translation="MKKTTIIMMGVAIIVVLGTELGWW"
     gene            complement(227..475)
                     /locus_tag="OQQ72_004269"
     CDS             complement(227..475)
                     /locus_tag="OQQ72_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS2013768.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG
                     WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS"
     gene            complement(623..805)
                     /locus_tag="OQQ72_004270"
     CDS             complement(623..805)
                     /locus_tag="OQQ72_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HCS2013769.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            complement(809..1169)
                     /gene="yeaR"
                     /locus_tag="OQQ72_004271"
                     /pseudo
     CDS             complement(809..1169)
                     /gene="yeaR"
                     /locus_tag="OQQ72_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1342..>1574)
                     /locus_tag="OQQ72_004272"
     CDS             complement(1342..>1574)
                     /locus_tag="OQQ72_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HCS2013770.1"
                     /translation="FFVQFIDVNAPHTGISFFILATTLELVSFCYLSFLIISGAFVTQ
                     YIRTKKKLAKVGNSLIGLMFVGFAARLATLQS"
BASE COUNT          432 a          375 c          350 g          417 t
ORIGIN      
        1 cggtattatt tttccggttg taatctttat tacagcggtc gtatttttag catggttttt
       61 tattggcggc tatgctgccc cgggggcata aagatgaaaa aaacaacgat tattatgatg
      121 ggtgtggcga ttattgtcgt actcggcact gagctgggat ggtggtaacg tcacctctaa
      181 aaaatagcaa aggctgcctg tgtgcagcct ttgtgcaatt taagcgttaa cttttaatct
      241 tcctgtagat aaatagcacg acaatcgcac caataacggc aaccacgaag ctgccaaaat
      301 tgaagccatc gactttacca aagccaaaca gcgtgctgat ccatccgccg actacggcac
      361 cgactatccc cagcaggata gtcataaaga atccaccacc atctttacct ggcatgatcc
      421 acttcgccag aataccggca ataagcccaa aaataatcca tgacagaatg cccattgttt
      481 cctcacttat ctgttttgca ttagcgggtt agtcgctgat aaaaagcata gcacaacatc
      541 gggagggcaa gatttgtgac gagcatcacg gaggattttt ttgcgatggc gcagaaattg
      601 cgccatcaac gatcagtgat aattaccaac cacaaacatc atgttcgttt tccgtgtcat
      661 aagaacgcac ggtattcacc agatctttta tcacttcagc cgccacttct ggcaccagca
      721 aagtcatcgg cgtctctgtt tcataatcga cagaaacgcc attactgtta ttggtgacgg
      781 tcacggtata cgttgctttg cccatgattc atttcccgtt atgaatgact ttccgttgtt
      841 gcgcaccttc catcaggact tcaggagcca cgaagaagtc aatgttgaca taagtatcgt
      901 cagtcatggc ttcaatgttg tgccactttt ctggagggaa caccgcaaac tgccccgctt
      961 cgataaggat cacctgatca ggctctgcac tgtgttcatc agcgtagccg agatatttga
     1021 ccgccccatg cataacggaa aggcgtgggt aacccccctg gcgcgttcct ttatcaagat
     1081 gacgttcgaa ttattccggc aggcgcagtt tgtttattcc agaaaggcgt tgagcgcgta
     1141 tgaatataat tctgtgggat ttgcagcatc cttttccctc cttcggtgaa tgcgctgaaa
     1201 acggtttatt ccagccgttt cagggtacgc ctgataattt gcattttaaa taccatttat
     1261 tggttacttt ttagcaccat atcagagaaa aatcagggag gattacaagt gggaagcccg
     1321 cgacaacgcg ggctgaatgt atcaggattg cagcgtcgcc agtcgggcgg cgaaacccac
     1381 gaacatcaaa ccaatcagtg agttgccaac tttagccagt ttctttttgg tacgtatgta
     1441 ctgcgtgaca aaagcaccag aaataatcag gaagctcaaa tagcagaaac tcaccagttc
     1501 cagcgtcgtc gccagaataa agaatgaaat tcccgtatgt ggggcattaa catcgataaa
     1561 ctgtacgaaa aacg
//
LOCUS       DAJVUY010000314         1549 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.322, whole genome shotgun sequence.
ACCESSION   DAJVUY010000314 DAJVUY010000000
VERSION     DAJVUY010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.322"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(328..453)
                     /locus_tag="OQQ72_004273"
     CDS             complement(328..453)
                     /locus_tag="OQQ72_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001431667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HCS2013771.1"
                     /translation="MWLPVLFRFLVDSLATLGHRLAASGITSRMLSVIPVLFFWG"
     gene            956..1432
                     /locus_tag="OQQ72_004274"
     CDS             956..1432
                     /locus_tag="OQQ72_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS2013772.1"
                     /translation="MFIDSEKRLKQLSDEAKKNTEDLEEAKKNSRFTQVSPKGWERVR
                     ELLKDSQGISALKLYSFLAEHIDPTCGAVVADQQFLAEKLGVSRSTIIRWLNYLESKN
                     ALVRIPVAGKVCAYALDPHEVWKGYNTTKNHAAFVTKTLVNKDGDIQRRIMAMFSN"
BASE COUNT          404 a          381 c          405 g          359 t
ORIGIN      
        1 aaaaaaaacc gagccgccac ggttccggta gcgctcaagg cgcggccgga aaccgtctgg
       61 ggagaacccc agacccccat cgctgcaaca ccgacggtct acgaccacct accaaccgca
      121 tggctgcctg ttccgtgcaa atgggctttg cagggggctg gcgcggttcc tggcgacctg
      181 aaagcccctg gttaggggta tcggcgcgct tgacctcctg agagcctctg taagcgtttt
      241 tcgcgccttc catgccctgg cgggcatcta aaacccgttt cgtgcgtctg agagcttttg
      301 agcgcgtttg aggggctatc tggcgactca tccccaaaag aacaacaccg ggatcaccga
      361 caacatgcga gaggtgatcc cgctcgccgc aagtcgatga ccgagcgtag cgagcgaatc
      421 gacgaggaag cggaagagaa ctggaagcca cattgagcac ttacgcactg atgcggggtg
      481 tcggggtgaa gccctgacca agtggtaatc gtatcggcgt gcatgcgcgg ttatacgatt
      541 acacatcctg tcccgatttc tgaggcgttt taacggtgaa cggacggcaa aaacacgatg
      601 gagctgttga acgtgaaaac cacgaaatct ggcaaaaatc acggctggcg aggcttgcat
      661 aggagtaagc cagtatacac tccgctatcg ctacgtgact gggtcagggc ttcgccccga
      721 cacccccaaa gggcgttgcg ttgcacgcaa cacccttacc tagaatagat cttttacgcc
      781 gatttgtaag tggttgtttt tttagtgtgt tttttattta cctgtcgcat ccaggatgac
      841 acaacgttgt cgcatccagg atgcgacaac acgcaacaag gtgttgcata gatgtgtcat
      901 gatggcttag atttgaacca acgttagtgc atgggatttt cagagggaaa aaatcatgtt
      961 tattgattca gaaaaacgac tgaaacaact ttcagatgag gcaaagaaaa acaccgagga
     1021 tctcgaagaa gcaaagaaaa attcaaggtt tacacaagta tccccaaaag gttgggaacg
     1081 tgttcgagag ctgctgaagg atagccaagg catatcagca ctgaagctgt actcattttt
     1141 agcggagcat atcgatccta cgtgtggcgc tgtcgttgcg gatcagcaat ttctagctga
     1201 aaaacttgga gttagcagaa gcacaattat tcggtggctc aattacttag aatcaaaaaa
     1261 tgcattagtt agaatccccg ttgctggtaa ggtttgtgcg tatgccctcg atccacatga
     1321 agtctggaag ggatacaaca ctacgaaaaa ccatgcagcg tttgtcacta aaacactggt
     1381 caacaaagac ggtgatattc agcgccgaat catggccatg ttttcaaatt gagctagcgg
     1441 caggcggaca atcaggggct acgtgttaac gttctgacca tgattgtcta tcctgcattg
     1501 ctcttttgcc gcctcaaaat cctttgcgtg tttttgctcc ccgttctcc
//
LOCUS       DAJVUY010000315         1512 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.323, whole genome shotgun sequence.
ACCESSION   DAJVUY010000315 DAJVUY010000000
VERSION     DAJVUY010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.323"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..1498)
                     /locus_tag="OQQ72_004275"
                     /pseudo
     CDS             complement(1..1498)
                     /locus_tag="OQQ72_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441428.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
BASE COUNT          386 a          391 c          321 g          414 t
ORIGIN      
        1 aatagccctt tccagtccca ttttcccgta ccaggaacgg gtaatcgcgg atcatggcct
       61 gattgacgat ctggataagc accagtatga acataaccaa tattgccgtt tacatcagca
      121 tagtaccagt tgatggtcag tgcttgtttc gctactcctg ccaatttttg gccttcatct
      181 gatgagtcca ggccagcaaa gacgccacct ctttaccatc ccatgcgcgg gatttagcgt
      241 aagccgtttg tgtcgtctgg tcagtttgga gaatgttgcc atgcaccgta cgccagacag
      301 taaaggtctc tgcctgacca tttttcaccg taatggtttc ctcacggctt aacattttca
      361 cccacttaca attatataag tagtagcctg gtttctctgc cgacagccgt tcagcaaaaa
      421 tatcgacatc atcgccgaaa cctgccgttg atccccagga aatcacacca ttatgaccaa
      481 aaaccagccc aggataggca aatggtgtat tgccagtgac atcataacca gcaccgtgca
      541 gaccaatacc ataagtatac gcaggcgcat accagccaaa ctgcggacca tttaccatga
      601 ttgctttcgc atcctgggct ttgcttttgc cgatcaccca catattgctg gtcgttggat
      661 accccgccag accattggca ccaccctgtg caaattgtgc agcaatagtt tcccggttct
      721 tccctgctgt taacgccagc agtgcgccat ccgccccttt tgctggtcgg tcaagcattg
      781 gtgcaggtaa atcgtagcgt ggcaacagag ctgctgtttg cgagttttgc tgattaaatt
      841 taagtgggta gctactctct tgtacggcaa tagtggttgg cgctgatggg tttaccagcc
      901 atttcaactg attaaatacc gccatgcctt gtgatacacc atatttatct tttaaagccg
      961 ttagcagtgc cagattatca atttcgctag tgctatcaga gaagcggttt gccatggtgc
     1021 ccacaaatat catcgcgaca tcaaacggtt cccagcgctt aggagtaaag ccaaatgtat
     1081 taaactgttt tggtaagagc gtctctggat tggtatttac cttatcaatc caggcattca
     1141 ttccatcagc gtagccttgc agaatggaca tatcctctgg ggaaagggca tcaatttgcg
     1201 cccggatagc atccggccag tagttacgac ggatatcttt atcaaatttc acaaaatctt
     1261 tgccaagcac ttccgcgaca gtcccttgag tactgcgacg tgccatttcc atctgaaaaa
     1321 ggcgatcttg tgctactaca tagccatagc cataaaatag gtgccatgta tcattggcat
     1381 aaatatgcgg catgccgtat tcatcgcgaa caatctttat ctcacttgac gactgctcag
     1441 ccagtgcagg taagctccaa taatacatca gggaagcagt aacacagttc acgatcatac
     1501 gatttctatt tt
//
LOCUS       DAJVUY010000316         1512 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.324, whole genome shotgun sequence.
ACCESSION   DAJVUY010000316 DAJVUY010000000
VERSION     DAJVUY010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.324"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..1386)
                     /locus_tag="OQQ72_004276"
                     /pseudo
     CDS             complement(1..1386)
                     /locus_tag="OQQ72_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313048.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
BASE COUNT          517 a          265 c          222 g          508 t
ORIGIN      
        1 agcgctggga gcttaccacc ataacaggcc catcatcgac agaggagaac aggataaata
       61 tattatcgtt tcgtgttaat ttattagtgt taaaggttct taacttttct tcagtttcta
      121 taaatatagg tgaaacatca tcactacgaa tccactcttt ataaagatac caggcatttg
      181 ctttgatcat atcatccgtt gatcgtaagg cctgatcgat aagttggata aaaaaattgt
      241 tatttttatc aatcagccct ttattcatat taaacctgtt aataaaatgg atcatctgtt
      301 gggtatcgaa atccaccttg ctgaatcgat gttgacgcat aaaatcatcg aacttgttat
      361 cttcaccaga atggatataa ctgcgtataa ttggatcttt tatataagga caatggctaa
      421 atgttttctt catattctca ataaagtttt tattaacaat attaagaatt tttaattgca
      481 taaccagttt tactgccaga acggatttca atatcattgc attatctggc aatgtatcaa
      541 tcatttttat aatgttattg atataaccat cgagatcttc attcccaaat atatctgaat
      601 aatcaatagt taattccaat tgttctgtaa tgcaatcttt aaaattccct gtcgacattc
      661 gcacatgatc aaacataaca gctgtcaaat tcgatttaat aaatgatatt tctttggcag
      721 acagaaactc tgctctggtg aagtgcgaag cgtaaagata acaattatcg aagtttgaat
      781 ttctaatctg acattcgcga aaattactat gaccaagttg actctgcgag aagtcaactg
      841 tatcaagaat atcttggcta aaatcaacac attcgccact cgttttgaga aaaatcacat
      901 tgtgtaaacg tcgacattta aatatgacat tatcaactgt tgccttagta aaattgcaat
      961 tctcaatttc tttacattcg aaagttacat gttgtagatt tgatgataaa aaagacacct
     1021 tagaaataac gtcaccttta aaatgacaat ttgttacatc aaaatcagac aggtcgatat
     1081 acccctgcga atctttatcc atcagaaaat tacaagcgca ttctattttt tcatttctgt
     1141 agaattttac acttatagta tcattactaa ttgagacttc acgtaacata tttattgcat
     1201 gattttttcg ttccgttgtt ttatatttaa aaatatatca ctgatataaa taaagttatc
     1261 tctgtttaaa cctgtcaccc cattgaaatt acgtagtaaa tcaagatcta ctatattatt
     1321 tccttgaacc acatcatgtt tcatcaaaga gttattgcca ccagaatttg tgatatgacc
     1381 tatcataaaa cctctgtaat acagaaataa aataacctgg aaaagtagcc tgagcgtcca
     1441 gacactaccg gcgaaaggaa aagaatctct gataaggcat tgagataatg gacattctta
     1501 gtgaagaaga ag
//
LOCUS       DAJVUY010000317         1496 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.325, whole genome shotgun sequence.
ACCESSION   DAJVUY010000317 DAJVUY010000000
VERSION     DAJVUY010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.325"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1494
                     /gene="pdeB"
                     /locus_tag="OQQ72_004277"
     CDS             <1..1494
                     /gene="pdeB"
                     /locus_tag="OQQ72_004277"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HCS2013773.1"
                     /translation="LPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDAL
                     QELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNVPQCSSLEHESPPDTFPEPG
                     KISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGN
                     AHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQK
                     GWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLA
                     NGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQH
                     PQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTEREFADPKTSAPIISR
                     YREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLK
                     LKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL"
BASE COUNT          396 a          351 c          367 g          382 t
ORIGIN      
        1 ctgcctgtcg gcttaagcat ctggctggcc catcagcagg tagaaacatc gtttattgaa
       61 gagctggata cctattcctc ccgcgtcgct attcgggcca ataaggtggc gacacaaggg
      121 aaagatgcgc tgcaagagct ggaaagatgg caaggcgctg cctgtagcga agcccatctc
      181 atggaaatgc gtcgggtatc ttacagttat cgctatattc aggaagtggt ttatatcgat
      241 aacaacgttc cccagtgttc gtctctggag catgaaagtc cgcccgatac cttccccgag
      301 ccaggtaaaa tttcgaaaga tggttatcgt gtctggttaa catcgcataa cgatttaggc
      361 attatccgtt acatggtcgc catgggaacg gcacattatg tcgtcatgat cgaccccgct
      421 tcctttattg atgtcattcc ctatagctca tggcaaattg atgccgccat tattggcaat
      481 gcccataacg ttgtcataac cagcagcgat gaaattgctc agggaattat taccaggcta
      541 caaaaaacac ccggtgagca tatcgaaaat aatggaatca tttacgatat cctgcccttc
      601 ccggagatga atatttcgat catcacctgg gcttcaacga aaatgttgca gaaaggctgg
      661 catcggcaag tctttatttg gttaccgctc gggttggtga ttggcctgct ggcagcgatg
      721 tttgtgctgc gtattttgcg ccgtatccag tcaccgcatc atcggctgca ggatgctatc
      781 gaaaatcgtg atatttgcgt gcactatcag ccgattgtct ccttagccaa tggcaaaatt
      841 gtcggtgctg aggcactggc gcgctggccg cagacagacg gtagttggtt gtcaccagat
      901 agttttattc cgctggcaca gcaaacaggc ctttctgagc cattgacgct actgattata
      961 agaagcgtct ttgaagatat gggcgactgg ctgcgtcagc atccacagca gcatatttcg
     1021 atcaatcttg aatccaccgt gctcacctcg gaaaaaatcc cgcaattgct gcgtgaaatg
     1081 atcaatcact atcaggttaa tcccagacag atcgcgcttg aactcactga acgcgagttt
     1141 gccgatccga aaaccagcgc cccgataatt tctcgctacc gggaggcggg ccatgaaatt
     1201 tatcttgatg attttggtac gggatattca agtttaagtt atttacagga tctggatgtc
     1261 gacattctga agatcgataa atctttcgtt gatgcgctgg aatataaaaa tgtcacgccg
     1321 catatcatcg aaatggcaaa aacactgaaa ctgaaaatgg tagcggaggg aatcgaaacc
     1381 agtaaacaag aagagtggct acgccagcat ggcgtgcact acggtcaggg ctggctctac
     1441 agcaaggcat taccgaaaga agatttctta cgctgggccg agcaacattt gtgaat
//
LOCUS       DAJVUY010000318         1461 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.326, whole genome shotgun sequence.
ACCESSION   DAJVUY010000318 DAJVUY010000000
VERSION     DAJVUY010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.326"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..732)
                     /gene="pdeC"
                     /locus_tag="OQQ72_004278"
     CDS             complement(<1..732)
                     /gene="pdeC"
                     /locus_tag="OQQ72_004278"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS2013774.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDN
                     HFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
                     FWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVY
                     STKRPIAAIVATSYQRLITHFYNHLI"
     gene            1162..1443
                     /locus_tag="OQQ72_004279"
     CDS             1162..1443
                     /locus_tag="OQQ72_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjcB family protein"
                     /protein_id="HCS2013775.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISS
                     GLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT"
BASE COUNT          424 a          321 c          323 g          393 t
ORIGIN      
        1 aataagatga ttataaaaat gggttataag acgttgatat gaagtcgcaa caatggctgc
       61 aattgggcgt tttgtcgaat aaactgtcgc atataaatag ccatttcttt gtacggttaa
      121 atccttcaaa tgaatcagcg gagaaaacgt tgctgccgag gcctctttgc ttaacgagaa
      181 aaaggttttc gtcaccgtat catacacacc ccattgcaat gtcggatcat cagacatcac
      241 ttcactccag aagagagggt tgataaccgc cacataattt ccccgctgca tataggtcat
      301 tttatagcca gagaaaaaag gcgtatcgcg gtaataatag atagaaacgt taggttcacg
      361 cttataatcg gccggtgcaa tcgtatagcc gtttacaggc gctatcagcg atgagcataa
      421 aaaatggtta tcacgggcat agatcaattc attaatataa agatagccac gaataatatt
      481 caacattcgc ttttgatggg ctggagtgca aacttgcccc tgatagcgtt cagctgcatc
      541 gctcactaaa tctgcctggc gaataaccag ctcggattta tccagtgcca gttgagcaaa
      601 ggttcggagc tgattattca cttctgattt tgcccaaagg aaggcaatcc atagcgaaag
      661 aatgatggga aagagaacta aaaagataat gcccggcaac gccagtaatt ggtgtcgtgc
      721 acgatgactc attgctatca atttcctgcc tgtttatacc cggccattgt aaggtgaaaa
      781 ccctgggtac cgacgtcttt agataaatct tacggtataa atagcacttt tgcctgattt
      841 gaaattgata cctttctaat cgtcacctgg atgaaaataa ttcattgata ttcaaaatta
      901 atttcctaca ggaatgcaga ggcggcggga agatatgccc ttaatgccac tgaaaaacca
      961 cataatctgt acagcaataa aagtcacggc ctaatatggc taacaaacaa tcaattgtga
     1021 tatatttcac aaaattaatg aaacaaacag agtgtttcat ttttgtgttc tgcaagcccc
     1081 gcgatagcca gagtgtacca cgcctcccgt gaacaacgcc gcgctgtcca gggcatcggc
     1141 tcttttcaga ggaattgttt gatggctacc ctcaccactg gcgtggttct tcttcgctgg
     1201 caacttctta gtgccgtaat gatgtttctg gccagcacac tcaacatccg ttttcgtcgg
     1261 tctgattatg tcgggcttgc ggtgatcagc agcggtctgg gcgttgtttc cgcctgttgg
     1321 ttcgcaatgg ggttgcttgg catcacaatg gcggacatca ccgctatctg gcacaacatc
     1381 gagtcggtga tgatagaaga gatgaatcag acaccgccac aatggccaat gattttgacc
     1441 tgatacgtag aagcctccat a
//
LOCUS       DAJVUY010000319         1457 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.327, whole genome shotgun sequence.
ACCESSION   DAJVUY010000319 DAJVUY010000000
VERSION     DAJVUY010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1457
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.327"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..183)
                     /locus_tag="OQQ72_004280"
     CDS             complement(<1..183)
                     /locus_tag="OQQ72_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013776.1"
                     /translation="MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMWI
                     CPYISRHLLSLNPLQAR"
     gene            complement(212..484)
                     /locus_tag="OQQ72_004281"
     CDS             complement(212..484)
                     /locus_tag="OQQ72_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YmgA"
                     /protein_id="HCS2013777.1"
                     /translation="MKTSDNERIKYEITGQVVLQILRMKINFSLQTLIKQLLVMKSAE
                     EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH"
     gene            complement(527..763)
                     /locus_tag="OQQ72_004282"
     CDS             complement(527..763)
                     /locus_tag="OQQ72_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YcgZ"
                     /protein_id="HCS2013778.1"
                     /translation="MHQNSVTLDSAGAITRYFAKANWPTQQETLGEIVTEILKDGRNL
                     SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE"
     gene            1077..>1457
                     /gene="bluF"
                     /locus_tag="OQQ72_004283"
     CDS             1077..>1457
                     /gene="bluF"
                     /locus_tag="OQQ72_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HCS2013779.1"
                     /translation="MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNG
                     SHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHER
                     DDVLQAVFDKGTSKFQLTYDDRALQ"
BASE COUNT          430 a          296 c          269 g          462 t
ORIGIN      
        1 gcgggcttgt aatgggttaa gtgataacag atgtctggaa atataggggc aaatccacat
       61 taaattggtg acagcctgcc ctaacactgc tgactcttct tctaacaaat tacccgaact
      121 gcgaaagtaa cttgctaacg ctttatcagt tattgcatta tgaattgtag tatcttcaag
      181 catggtaacc tctcatctta cttatgaaat tttaatgtat tctgtttatt ttcttaccat
      241 tgaacatact tttattgtca gctgtcgctg ttcttcggtt tggccctcct gaatcactat
      301 tgctaaaatc acgaattatg ctgtcaatta aatcgcgtcg gaaagcatct tcctcagccg
      361 atttcattac gagtaattgc ttaataagag tctgcaatga aaaatttatc ttcatgcgca
      421 gtatctggag caccacctgg ccagtaattt catattttat acgttcatta tcagatgtct
      481 tcataacgac ttcatagcta acctgttaaa taatcaggct gttgcattat tcaaaaagca
      541 acccaattag tgcattataa tgtttctgtt cctcttcccc agtcgcgtgt tccagtcggc
      601 aaagaagttt ggcacaaagc gactttcgac tcagattacg tccatctttc aaaatctcag
      661 tcacaatttc cccgagagtt tcctgctgag taggccagtt agcttttgca aagtaacgag
      721 tgattgctcc cgcagaatct aaagtcactg aattttgatg catgctacgc ctctgttaaa
      781 aatgttaatc aatgttaagt gaggtaacaa tagcaaactt gtacgaaata tgtgtacaga
      841 atgataaatt aattttttgc aattagtgcc aatacatata aaacaatgtg ttatgataaa
      901 acatattgca tcatttaact gacaatctat acgagatttt tcgccaacta gtgttcaact
      961 ttttccattt tttatcaatg taaagaaacg gttatgtttt ggtattaaaa gaaagacaca
     1021 agaagatatg tctgttaccg tcttactctc gcctcaccca ttaccctgga ttgttaatgc
     1081 ttaccaccct tatttatcgt agccatatac gtgacgacga acctgtcaaa aaaatcgaag
     1141 aaatggtttc gatagcaaat cgcaggaaca tgcagtctga cgtaacaggg atcttactgt
     1201 ttaatggttc tcattttttc cagcttctgg aaggtccgga agaacaggtt aaaatgatat
     1261 atcgggctat atgccaggat ccacggcact ataatattgt tgagctgctg tgcgattacg
     1321 cgcctgctcg ccgttttggc aaagcgggaa tggaattatt tgatttgcgc ctgcacgagc
     1381 gagatgacgt tttacaggcc gtattcgaca aaggcacatc aaaatttcag ctaacttatg
     1441 atgacagagc gctacaa
//
LOCUS       DAJVUY010000320         1405 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.328, whole genome shotgun sequence.
ACCESSION   DAJVUY010000320 DAJVUY010000000
VERSION     DAJVUY010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.328"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            35..313
                     /locus_tag="OQQ72_004284"
     CDS             35..313
                     /locus_tag="OQQ72_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005028610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HCS2013780.1"
                     /translation="MSDAVYRRLILMKAMSNITDCSVPDINRMLRFMFGKKRRAYVLN
                     NGGLRMSYIFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ"
     gene            300..830
                     /locus_tag="OQQ72_004285"
                     /pseudo
     CDS             300..830
                     /locus_tag="OQQ72_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000772810.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            1164..>1405
                     /locus_tag="OQQ72_004286"
     CDS             1164..>1405
                     /locus_tag="OQQ72_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013781.1"
                     /translation="MDVYANSQRVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNA
                     AFYLWGNPSRSVVAELGDDSGWHFFSQRNTDNSITFA"
BASE COUNT          352 a          309 c          391 g          353 t
ORIGIN      
        1 ttacaacgga aaatcggata cccggactgt tgacctgtct gatgctgtat accggcggct
       61 gatactgatg aaagccatgt cgaacattac tgactgttcc gttccggata ttaaccggat
      121 gctgagattt atgttcggaa aaaaacggcg agcttatgtt ctgaataatg gtgggctgag
      181 gatgagttac atctttgagt ccgcgctctc gttggcagaa ctggcgatta tccagtcgtc
      241 gggtgcactg ccgtccccgc cgggtgttta tgtttcagta gttttaaagg agtcccgtaa
      301 tgaaggccag tgataaaccc cgccagctgg cggtcccctt tgcgagtacc ggagataaaa
      361 accgtatccc ggacaaggcg acacagcaga ccagagagag cggtaatgct gcgtatgatt
      421 caggttttcc tccggtgacc atgacagcgg tctcagcggg aggtataccg ccacacggca
      481 aggattttaa cggtctgatg tacgatatta ccgcagcaat acggttcgcc caggctggcg
      541 gtttgtacac gtataatgcc ggttttgcgg gggccattgg tggatatgca aaaggagcca
      601 ttctcgccgg agtcgcaaca acagcggtct ggctgaatac cacagacgat aacctgaccg
      661 atcctgaagg ctccgacagt gcgggctggg taaatcttct tgaggatccg aaaaggatat
      721 tcctgcggca gaagaacaat ctgtcagacc ttcagaataa agggacggta cgggataatc
      781 ttcaggttta cagtaaagag cagtcagatc aacgctatgt tcatcgggaa ggcgataaaa
      841 taaccggaga gctgaaaatc cgtggtgtta atgcgctgag gattttcaac gaagcttttg
      901 gcctgatttt tcgtcgttcg gaagagtgcc tgcaccttat tcccaccagt gaaggtcagg
      961 gggaaaatgg cgatattggt cccctgcgcc cgttcaccat taatttgcgg acgggtgaaa
     1021 tatccatgtc gcataaagtg tctgttggcg gtggttcgca ggtcaatggt gcgctgggta
     1081 tcggcgttca gaacgccctg ggggggaatt caattgttct tggtgataat gacaccggat
     1141 ttaaacagaa tggagacggt attctggatg tttatgctaa tagtcagcgt gtattccgct
     1201 ttcagaatgg agtggctatt gcttttaaga atattcaggc cggaactgcc agaaaattca
     1261 cgttatccag cgccaacaac tccacgaaaa atgcagcgtt ttatttgtgg ggtaatccat
     1321 ccaggtctgt tgttgcagag cttggcgatg attcaggctg gcattttttc agccagagga
     1381 atacagataa cagcatcacg ttcgc
//
LOCUS       DAJVUY010000321         1357 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.329, whole genome shotgun sequence.
ACCESSION   DAJVUY010000321 DAJVUY010000000
VERSION     DAJVUY010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.329"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>1357
                     /locus_tag="OQQ72_004287"
     CDS             <1..>1357
                     /locus_tag="OQQ72_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS2013782.1"
                     /translation="IDGLPHVDFSRVDKFFTYADAFRESLPIISGELYFEAHQGCFTS
                     ESATKAHNRNMENKLHDAEFFTTITNNMTSILRSEFDEIWKEMLTLQFHDILPGSCIS
                     RVYLETEKEYIKLEAKTEKIISDTQSTLLSKIDTSSYKDPHILFNTTCFARNEWININ
                     NNWLKARVNSYGYAVIDPKNKIVNGLKAESRSIENNYIKLLFSENGDLISLYDKRYGK
                     EYITENMHSEIRAYHEDAGFFAAWDFASNYRDGESYVLLAEKMTTVISGPKTTMTLIY
                     HYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVKFPVSVQTSLAQCQIQFGVID
                     RPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNKYGYRVKDQTLDLTLLRSQHK
                     PGEIVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYRVGGVINQAYIMNHPLQVVPV
                     KP"
BASE COUNT          433 a          262 c          242 g          420 t
ORIGIN      
        1 attgatggct tacctcatgt tgatttcagc cgtgttgata agttcttcac ttacgccgac
       61 gcttttcgcg aaagcttgcc cattatttca ggtgaacttt atttcgaggc tcatcaaggg
      121 tgctttacat cagagtcagc aactaaagct cataatcgaa atatggaaaa taaattacat
      181 gatgctgaat tttttacaac tattactaat aatatgacat caattcttcg cagtgagttt
      241 gatgaaatat ggaaagagat gctgaccttg caattccatg acatccttcc cggatcatgt
      301 atttcaagag tttatcttga aactgaaaag gaatatatta aactagaagc aaaaaccgag
      361 aaaattattt ctgatacgca gtctacttta ttaagtaaaa ttgatacttc ttcttataaa
      421 gatccgcaca ttttatttaa taccacctgt tttgctcgta acgaatggat caatataaac
      481 aacaactggc tcaaagcacg agtaaactct tatggttatg ctgtgattga tccaaagaat
      541 aagatcgtaa atggtctgaa ggcagaatct cgaagtattg aaaataatta cattaaactt
      601 cttttttcag aaaacggtga tttaatttcg ctatatgata aaagatatgg taaagaatac
      661 attactgaaa atatgcacag tgagatccgt gcataccacg aagatgcagg ttttttcgcg
      721 gcctgggatt ttgcttcaaa ttatcgtgat ggggaatcat atgttttact cgctgaaaaa
      781 atgacaactg taatcagcgg gcctaaaact acgatgacgc tgatttatca ctacaattcc
      841 tcttatcttc gcttcgcatt taccctgaca caggacagtc cacgcgttga tgtccaaact
      901 tttattgatt ggcacgaacc taatgtttct ctcaaagtca aattcccggt gtcagtacaa
      961 acatctcttg cacaatgtca aattcagttc ggtgtaattg acagaccaac gcatagcgat
     1021 gattcgttcg cttttgccaa agatgaaata ccagcacatc actgggtcga cctttctgat
     1081 cgagaaactg gcatagcttt aatagcaaaa aacaaatatg gctatcgtgt caaagaccag
     1141 acgcttgact taactttgct gcgttcgcag cataaacctg gggaaattgt taagacagac
     1201 aattatgata atttcctgat taataatttt gcagatattg gtaaacaaaa attcatattc
     1261 tccttatttc ctcatcatgg agattaccgt gtgggtggtg ttattaatca agcctatata
     1321 atgaatcatc ccttacaggt cgtccctgtc aaaccgc
//
LOCUS       DAJVUY010000322         1335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.330, whole genome shotgun sequence.
ACCESSION   DAJVUY010000322 DAJVUY010000000
VERSION     DAJVUY010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.330"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..175)
                     /locus_tag="OQQ72_004288"
     CDS             complement(<1..175)
                     /locus_tag="OQQ72_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001544403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory CII family protein"
                     /protein_id="HCS2013783.1"
                     /translation="MFDYQVSKHPHFDEACRAFALRHNLVQLAERAGMNVQILRNKLN
                     PAQPHLLTAPEIWL"
     gene            complement(208..429)
                     /locus_tag="OQQ72_004289"
     CDS             complement(208..429)
                     /locus_tag="OQQ72_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCS2013784.1"
                     /translation="MRPNISITLTTPHVTIERYSELTGLSIDTINDMLADGRLIRHRL
                     RKDKKREKVMINIAAMTVDALSECNLNLN"
     gene            555..1124
                     /locus_tag="OQQ72_004290"
     CDS             555..1124
                     /locus_tag="OQQ72_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001047328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein CI"
                     /protein_id="HCS2013785.1"
                     /translation="MNLEKGGRGAIERMVEAYGFKTRQALCDHLGISKSTLATRYMRD
                     SFPAEWVIQCALETGTSLNWLTTGHGSKQTSGNTNTMEVAKYVLSDGALREDGFYIFD
                     KGFLPSTFKKPFVITDNNSEFICDKEFDDIRDGKWVISIDGEVTIRDITRLPGGRIFV
                     EGGNRAFECKIEDIEIIGKIISLTVKYVR"
     gene            1140..1331
                     /locus_tag="OQQ72_004291"
     CDS             1140..1331
                     /locus_tag="OQQ72_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001513672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013786.1"
                     /translation="MLGKVFFVVLSCSLLLSPLTTYAKNYPCSGKKGGVSHCTSDGKF
                     VCNDGTISKSKKICTKNSR"
BASE COUNT          397 a          242 c          300 g          396 t
ORIGIN      
        1 gcagccagat ttctggtgcg gttaataaat gaggctgagc tgggttcagc ttgttccgca
       61 gaatctgcac attcatgcct gcacgttctg ccagttgcac cagattgtgg cgcagtgcaa
      121 atgcacgaca ggcttcatca aaatgtggat gtttggaaac ttggtaatca aacatggtca
      181 atgcctctga tgtatttcag aatcgaacta attaaggttt agattgcatt ctgaaagcgc
      241 atcaacggtc attgctgcta tgttgatcat cactttttcg cgttttttat ctttgcgcag
      301 acggtgacgg ataaggcgtc catcagccaa catgtcattg atggtatcga tggatagccc
      361 tgtcagctcg ctatagcgtt caatagtcac atgaggcgtg gtaagagtga ttgaaatgtt
      421 aggtctcatg atgcaacatt cctcgtttaa tgatgattaa tcaggacgaa tacggatcgt
      481 ttgtattttg tgaacaccat aaacatacga ttgcacagtg aaatcgtcaa gataaaagtt
      541 cacttggagt gaccatgaat ttggagaaag gcggacgagg cgccatagag cgcatggtag
      601 aagcttatgg attcaagact cgacaggcgt tgtgcgatca tttaggaatc tctaaaagta
      661 cactcgccac acgctacatg cgtgactcat tcccagcaga atgggtaatc cagtgcgccc
      721 ttgaaacggg cacctcgctt aattggctca caaccggaca tggttcaaag caaacttcag
      781 gtaatacaaa tactatggaa gttgctaaat atgtattatc tgatggtgcc ttgcgtgaag
      841 acggttttta tatttttgat aagggatttc taccctctac gtttaaaaaa ccttttgtca
      901 tcacagataa caattctgaa tttatttgtg ataaagaatt tgatgacata cgtgatggta
      961 aatgggtaat aagtattgat ggcgaagtaa cgatccgtga cattactcgt ttacccggtg
     1021 gaagaatctt cgtcgagggt ggaaacagag ccttcgaatg taagatagaa gacattgaaa
     1081 taattggtaa aattataagt ttaacagtta aatatgttag ataataccgg gaggaaacta
     1141 tgcttggtaa agtatttttt gtggttttat catgctcttt gttattaagc ccactaacta
     1201 cctatgctaa aaattatcct tgttctggga aaaagggagg tgtctctcac tgtacctccg
     1261 atggaaaatt tgtttgcaat gatggaacta ttagtaaatc caaaaaaatc tgtactaaaa
     1321 actcacgata acttt
//
LOCUS       DAJVUY010000323         1333 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.331, whole genome shotgun sequence.
ACCESSION   DAJVUY010000323 DAJVUY010000000
VERSION     DAJVUY010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.331"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            76..995
                     /locus_tag="OQQ72_004292"
                     /pseudo
     CDS             76..995
                     /locus_tag="OQQ72_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            995..>1333
                     /locus_tag="OQQ72_004293"
     CDS             995..>1333
                     /locus_tag="OQQ72_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000680621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS2013787.1"
                     /translation="MKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCK
                     EQTSGNIYGKALAEKGYLVLAYDASFQGESGGEPRWIEDPTQRVEDISRVIDYAVTLP
                     YVNAERIGVLG"
BASE COUNT          379 a          301 c          323 g          330 t
ORIGIN      
        1 aatcaactta atgatcaata tctatagtga tatcaccaac cgttaaaacg aaccgacaac
       61 tccatgagga acggaatgat gaataataaa gtcagcttca ctaacagcaa taatccaacc
      121 atctctttgt ctgcagtgat ctatttccct ccaaaatttg atgaaacccg tcagtatcag
      181 gcaattgtgg tatctcaccc aggtggggcg ttaaagaaca aacggccgga acctatgcca
      241 aaaaactggc ggaaaaggga tttgtcacta ttgcttatga cgcatcttat caaggtgaaa
      301 gtggcggcga gccgcgtcag ttagaaaacc catacattcg tactgaagac atcagtgccg
      361 tgattgatta cctgacaacg ctttcttatg tcgacaatac ccgaattggt gcgatgggaa
      421 tttgtgccgg tgcaggatat acagccaatg ctgcaattca ggatcgccgc atcaaggcca
      481 tcggtaccgt tagtgcggtc aatattggtt cgatgttccg taatggttgg gaaaacaatg
      541 tgaaatctat tgatgccctg ccatacgttg aagcgggttc aaacgcccga accagcgata
      601 ttagcagcgg agaatatgcc gttatgccac tggcaccaat gaaggagtcc gatgcgccga
      661 acgaagaact gcgtcaggcc tgggagtatt accacacccc tcgcgcgcag tatccaacag
      721 caccgggtta cgctactttg cgcagcctta accagattat tacctttgat gcttaccata
      781 tggcggaagt gtacctgact cagccgatgc agattgtggc gggcagccag gcagggagca
      841 aatggatgag tgacgatctg tacgatcgag catcaagcca agataaacgc tatcacattg
      901 ttgaaggcgc aaaccatatg gatctttatg acggcaaagc ctatgtggct gaagcaattt
      961 cagtattagc tccgttcttt gaggaaactc tgtaatgaaa catattcaaa tccgcaatag
     1021 tgatatggcc tggcatattg ctgccaatat tcagtttcca ccaaattttg atgagtcaaa
     1081 acagtatccg gcgattatca gcgtccatcc ttttggcagt tgtaaggagc agacgtctgg
     1141 caatatctat ggcaaagcat tggctgaaaa aggctatctc gttctcgctt atgacgccag
     1201 tttccaggga gaatctggtg gggagcctcg ctggatagaa gatccgacac agcgcgtaga
     1261 ggatattagc cgtgttatcg attatgcagt aactctgcca tatgttaatg ctgaacgtat
     1321 tggcgtgctg gga
//
LOCUS       DAJVUY010000324         1313 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.332, whole genome shotgun sequence.
ACCESSION   DAJVUY010000324 DAJVUY010000000
VERSION     DAJVUY010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.332"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..695)
                     /locus_tag="OQQ72_004294"
     CDS             complement(<1..695)
                     /locus_tag="OQQ72_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS2013788.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMS
                     LELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQL
                     SPRIMQTLLQQTA"
     gene            complement(1011..>1313)
                     /locus_tag="OQQ72_004295"
     CDS             complement(1011..>1313)
                     /locus_tag="OQQ72_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCS2013789.1"
                     /translation="SMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVV
                     HNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK"
BASE COUNT          382 a          226 c          279 g          426 t
ORIGIN      
        1 tgggcggttt gttgtaacaa agtttgcatt attctgggag atagttgatt ttctctaaga
       61 ttgacaacgc tatcagaact gaggccaagt atgctttccg gaattgccgt gatccggttc
      121 tgattaagcc agaatattct tataatatga tcatctcttt ctggaaaatc tggtattact
      181 tccaaagcat ttctggctgc atcaagtaat tccaatgaca ttggtaacct cggaagtaca
      241 gacaggtgat tgtcacttac gttaatatat tctagtgacg caggtaattc aggaagtgcg
      301 aacaaatggt tatcactcac atttatatat tccagcgaca ctggtaattc aggaagtgca
      361 gataattgat tactgcttgc attcagttct ttcaatgccc ttggtagctc ggggagcatt
      421 gatagttggt tattgcttac attaatttca tcaagattgt caggcaatcg tggtagagat
      481 ctgagaccta aacaagataa gtccaacgat gtttcactgt tttccagaca taattggagc
      541 cgggtaaaag cagtttccct gttttctccg gaaatgctgt ttttagtcca ttcaacccat
      601 tcggagagat aattattgtg aacattgtcg attgatgtag ttctgtaaaa agagacgttt
      661 ccagtggata gggggggatt atttacagga agcataataa cctcgcagaa ggatatcctg
      721 ataaaatgtg atactgggaa ataataagct aaaataaaat gtttcaggat tgaaatttat
      781 tgttttcatt ttaaggaagt gatgttgatt taactgtaaa aaaacgatac tattttctta
      841 gatggtaaat gtctcgcctg tgctatattt tgtttttcgg ttagttaaat atcgtacatt
      901 catatttgaa tgttctgccg gaatgcatta tcaatagagg taaagtcgca accccaaatc
      961 gtaaaggaaa ccgtagcacg tcttaagcaa gaacgtgctg cggttggatg ctattttttc
     1021 cctgaagcag aaaacattac tacagtacct tgaaccttgg ttttaacatt ctcgaaatgc
     1081 tctgagagta tatgtgttaa gccttcttcg gaatcttttg tgtttgaaaa gatgcctttc
     1141 tgattgtaaa tgcgcatcag tttttgaccg aagctattgt gcacaactcc atcgccaaga
     1201 attgtggctc cgtatagagt tccatcatca gttaaggcct gcgccgcatt gcgtattaca
     1261 cagctttttg tagatatatt tccaggcagg cagtgaagaa ggtaaaacat gga
//
LOCUS       DAJVUY010000325         1285 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.333, whole genome shotgun sequence.
ACCESSION   DAJVUY010000325 DAJVUY010000000
VERSION     DAJVUY010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.333"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            368..1156
                     /gene="virF"
                     /locus_tag="OQQ72_004296"
     CDS             368..1156
                     /gene="virF"
                     /locus_tag="OQQ72_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HCS2013790.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSGEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1098..>1285)
                     /locus_tag="OQQ72_004297"
     CDS             complement(1098..>1285)
                     /locus_tag="OQQ72_004297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HCS2013791.1"
                     /translation="APQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAFK
                     IFYDISKISLELYHNIH"
BASE COUNT          441 a          202 c          223 g          419 t
ORIGIN      
        1 aatatcaaca ccaaccggat ttgtggagcc tccagtctga aggggcttta tgcgttccgt
       61 ataggatatt atgatgctgg agttttgcga agctccactc ctttccgaac atttacacag
      121 atattgccta agaaaagtga aaccataata tggttatagt ccctttcagt gcaaatactt
      181 agcttgttgc acagagaaat agaagctgca taagctcttt cttcaaaaaa tgtaaataaa
      241 gttaaatata ggaaaaatta cttaatctat cttaataacg gaaagatttt gtatacaatc
      301 actgttacag aaatttctta gttactctgt aaacactaaa tatagtttgg tatattctgt
      361 tgaatttatg atggatatgg gacataaaaa caaaatagat ataaaggttc gcttgcataa
      421 ctatattatt ttatatgcaa aaaggtgttc aatgacggtt agctcaggca atgaaacttt
      481 gactatcgat gaagggcaaa ttgcttttat agagcgaaat atacaaataa acgtctccat
      541 aaaaaaatct gatagcatta atccatttga gattataagc cttgacagaa atttattatt
      601 aagcattatt agaataatgg aaccaattta ttcatttcaa cactcctatt ctgaggagaa
      661 aagggggtta aacaaaaaaa tattcctcct ctctggggag gaggtttcta tcgatttgtt
      721 caaatctata aaagagatgc cttttggcaa aagaaagatc tatagtttag cttgcctttt
      781 atcagctgtt tctgatgagg aagctttata tacttcgata tcgatagctt cttctcttag
      841 tttttctgat cagataagga agattgttga aaaaaacatc gagaagagat ggcgtctttc
      901 tgatatttca aataacttga atttatcaga aatagctgtt agaaaacgat tggagagtga
      961 aaaattaaca tttcaacaaa tccttcttga tattcgcatg catcatgcag caaagctttt
     1021 attgaatagt caaagctata ttaatgatgt atcaagactt atcggaatat caagcccatc
     1081 ttattttata aggaaattta atgaatatta tggtataact ccaaagaaat tttacttata
     1141 tcataaaaaa ttttaaatgc ttcatagccc atcgctattg ccagatgggt tttccccaca
     1201 cctgatggcc ctagtaatac gatattttca ttacgttcta tgaagctgag tgagcgtaac
     1261 gactggagtt gcttctgcgg tgctc
//
LOCUS       DAJVUY010000326         1268 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.334, whole genome shotgun sequence.
ACCESSION   DAJVUY010000326 DAJVUY010000000
VERSION     DAJVUY010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.334"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..610
                     /locus_tag="OQQ72_004298"
     CDS             <1..610
                     /locus_tag="OQQ72_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000521550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
                     /protein_id="HCS2013792.1"
                     /translation="ILQRHIASFSHHGLPQGSDDALRYIAEHDDALAFACINRQMIAL
                     RIMQQVKATGSPVLDVAHNFVSACQIGDQQGWLHRKGATPDDNGLVIIPGSRGDYSWI
                     VQPVANEKTLHSLAHGAGRKWGRTECKWRLAAKYTVTQLSRTELGSRIICRDKQLIFE
                     EAPQAYKSAESVVQCLVQAGLIIPVARLRPVLTLKNSGGKKG"
     gene            607..1221
                     /locus_tag="OQQ72_004299"
     CDS             607..1221
                     /locus_tag="OQQ72_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS2013793.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
BASE COUNT          311 a          296 c          381 g          280 t
ORIGIN      
        1 tattttacag cggcatattg cctcgttctc gcatcatggt ttgcctcaag gcagtgacga
       61 cgcgctacgg tatattgcgg aacatgacga tgcgctggcg tttgcgtgta ttaatcgcca
      121 gatgatcgct ttgcgcataa tgcaacaagt taaggccacg ggaagtccgg ttctggatgt
      181 ggcgcataac tttgttagcg cgtgtcaaat cggcgatcaa cagggctggt tgcatcgtaa
      241 aggtgccacg ccggatgaca acggtctggt gattattccc ggttcacgtg gtgattactc
      301 ctggattgta cagcctgttg cgaacgaaaa aacgctccac tcgctggcgc atggggcagg
      361 gcgtaaatgg gggcgcaccg agtgtaaatg gcgtctggca gcgaaataca cggtgacgca
      421 actctcgcgg actgaacttg gcagtcggat aatttgtcgc gataaacaac tcatctttga
      481 agaagcgcca caagcctata aatcggctga aagcgtggtg caatgtctgg tgcaggccgg
      541 tttaattatt cctgtcgcgc ggctgcgtcc ggtgctaacg ctcaaaaaca gtggagggaa
      601 aaaaggatga tcttgctaca actctcctca gcgcaggggc cggaagaatg ttgtctcgca
      661 gtgaaaaagg cgctggacag gctaattaaa gaagctgccc gacaagacgt cgcggtaacg
      721 gtgttggaaa cagaaacggg ccgctactct gacacgctgc gttcagctct ggtttctctg
      781 gatggcgata acgcatgggc attaagcgaa agctggtgtg gcactattca gtggatttgt
      841 ccgagtccgt atcggcctca tcatgggcgc aaaaactggt ttctgggcat tgggcgtttt
      901 accgctgatg agcaggagca atccgatgcg atccggtatg agacgctgcg ttcgtcgggg
      961 ccgggcggtc aacatgtcaa taaaaccgac tcggcggtac gcgccacgca tttggcatcc
     1021 ggtattagcg tgaaggttca gtcagagcgt agtcagcatg ctaacaagcg gctggcacga
     1081 ttgctgattg cctggaagct ggagcagcag caacaggaaa atagcgcggt gctgaaatcg
     1141 cagcggcgaa tgttccatca ccagattgaa cgtggcaacc cgagacggac atttacaggg
     1201 atggctttta tcgaaggata atgaaggatg aaactgccgg aaggcgatta aacgccatcc
     1261 ggcagcaa
//
LOCUS       DAJVUY010000327         1261 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.335, whole genome shotgun sequence.
ACCESSION   DAJVUY010000327 DAJVUY010000000
VERSION     DAJVUY010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.335"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..1261)
                     /locus_tag="OQQ72_004300"
                     /pseudo
     CDS             complement(1..1261)
                     /locus_tag="OQQ72_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246439.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          372 a          355 c          280 g          254 t
ORIGIN      
        1 ccaaccagta aaacgcttca gttttcaacg caccccacag catcggccag aaaatgagtc
       61 ctgcaattgc ccctgtgcgc ataatagcgc gggcaaatcc gaccccagta gggcgaatag
      121 cgggaagata agagagtgtg gcaatggtca tgcccagccc accaggaccc gctgaatgga
      181 agaaaataat tgatcccaat aaccctaaag acagccaggg attagtcgtt gccagtgcgc
      241 ctaacgacag caatgctaag gtcacaacag caaatccata catcgactgt cggcgagtac
      301 ccagtcgttg gagaataaac gagccgatca tcccgcctgt caccccacaa agggcattca
      361 cgacggcaga accggtcaac gcgccagtaa gcccgccact tattattccc gccaacgtaa
      421 gaggaagata aacacctacg gcgttatatt gccacgcctg catggttgcc acgacacagc
      481 caagaatggt gcgtttgcgg taacgatcat taaataagat gccatatcca ccactgtatt
      541 tattctctgc tttttccgag aatttcgctt ctgttgtacc cgatgccgca acgcgagcct
      601 gaacaccata acgttttccc agaatgtcgc acgcttcctg gtaacgcccg acgcgtgcgg
      661 cccacattgc ggattcacca ataaagaagt aacgcaaaat catgaagatg actgcaaaaa
      721 tagctccgat gaatattccg taacgccaca attgttcttc agcgataccc gacagaagca
      781 gcggcaaaag taccaaataa acaacggttg tcgaaacata ccaggccatt tgccagaggt
      841 tgaccgacgt tccggttttc ttcgacgttg aaccacgaag ctctgccacg gcattggttg
      901 ccaaagggaa gtcgatgcct aaaccaaagc ccatgatgac gcggcacacc agcacccacc
      961 agatactggg agcaatagct accgctgcag caccgatggt gcacagcccc atgccaataa
     1021 taaatgcccg cttttgccca aagcggttta ttactcggtt cgctaataaa ccgccaatta
     1081 acgcggcgat taatactgat gcattgacgg ttgcagcaag acccggcgaa atgccgaatt
     1141 gagcggcaat gtatttatta ccaaacccca ccatcgccgc ctagtaggca tcaatcaata
     1201 tgccgcccaa agcaataaaa ataacgccga tactggtgtt gattgcagag ttcttattaa
     1261 c
//
LOCUS       DAJVUY010000328         1252 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.336, whole genome shotgun sequence.
ACCESSION   DAJVUY010000328 DAJVUY010000000
VERSION     DAJVUY010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.336"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(93..422)
                     /locus_tag="OQQ72_004301"
     CDS             complement(93..422)
                     /locus_tag="OQQ72_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310836.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HCS2013794.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE
                     MKNGEAK"
     gene            complement(594..>1252)
                     /locus_tag="OQQ72_004302"
     CDS             complement(594..>1252)
                     /locus_tag="OQQ72_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS2013795.1"
                     /translation="TGEIDTALWRSGDVLLGSLLAMLFTGIWPQRAFIHWRIQLAKSL
                     TEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIAPASKETRIPKSIYEGIQT
                     INRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQQILLSLVHALYEGNPQPV
                     FANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
                     "
BASE COUNT          305 a          298 c          294 g          355 t
ORIGIN      
        1 agttatcaga tgggaatgat gacggtgata cacagaaaag aatcaatgag caatgagggt
       61 tgccaggcaa ccctcattga ataaaacagg aattacttcg cttcgccgtt tttcatttcg
      121 cccatagctt tcagcttttt ggagatatcg cggcgttctt tggagagctc ggcatttttg
      181 atgatgtaat cgtcaacgcg atcttcatag tcacctttca tgctggcgat gatgccctgg
      241 attgcttcaa cgctcatccc cggcttgatg taatcgctca ggttgtccag cagcaggacg
      301 cgcttctggt tgtcacggat ctttttctca acgtcctgaa tttcacgttg cagtttgttc
      361 ttacgacgga acagacgaac aaattccagt acgtcctgga atgaaggctt ggtagtttcc
      421 atttttatac ccctgataat gtgagagtcg gattcgttta agcaaccgct atccgttaga
      481 gccaacatta ctcatagctg ccgcagatga caatgctttt atcccttttc actatcatac
      541 cctttatcct tgctgaatcg aagcagcagc aagatgattc tgtagttcag gaattatttg
      601 cgcaaggccc ggcaaatcag attcgatagc aactcaagct gatgtgccgt ttccatgttc
      661 agccacacat aaccatagat tggtgtttcc acaaccttca ggtcatggtg gttattgagc
      721 aactgacgca gctcttccac tgcatcgttc aatttttccg tattggcaaa aaccggctgc
      781 ggattacctt cgtacaacgc atgaacaagg ctcagcagta tttgctgcat catgtgctgg
      841 gtatcacgaa gtttttgcgc gttcaataac acgaaatggc tggggcgcgt ggcccagtac
      901 gcattgattt gcaactccag catacaaacc agattgcggt taatggtctg gataccttca
      961 tatatcgatt ttggaatacg ggtttctttg ctggcgggcg caatcagccc acgcattttc
     1021 acggcatcgg tcaggagttt ttgtagatgg ctttccagac gtgggcgttc gagtaagttc
     1081 ggtgagaatg cagattgata gacccgatta tactcggtca gacttttcgc cagttgaatg
     1141 cgccagtgga tgaacgcccg ttgtggccag ataccggtaa acaacattgc cagtaaagag
     1201 ccgaggagca catcgccgct tcgccataac gccgtatcaa tttcacctgt cg
//
LOCUS       DAJVUY010000329         1242 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.337, whole genome shotgun sequence.
ACCESSION   DAJVUY010000329 DAJVUY010000000
VERSION     DAJVUY010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.337"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            220..1167
                     /locus_tag="OQQ72_004303"
     CDS             220..1167
                     /locus_tag="OQQ72_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS2013796.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFGTGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
BASE COUNT          340 a          241 c          297 g          364 t
ORIGIN      
        1 aggtttagca ccgtcatgct cgtctactgt tgttctggtt gttggtgatg cggtggcgct
       61 tgcactctct gaattgaaaa aatttactcg tgctgatttc ggcttatatc atccaggagg
      121 tgcactcggc attaaagcaa attcataatt tcaaagtata aatacagtga ccggtcacgc
      181 catcttttgg ggtggcgttc attgaagtga gtgtcagcta tgaaaaatgt tctggtcacc
      241 gtccccagct tttcagcacg ctgtgtttcc gccagcaagt tgctaagaga gaataatttt
      301 aatcttatta ttaagaataa tgtggagcat ctgcttaaat cagaatccac tgcattacga
      361 gaatctattt gcgcggtcat cgccggaaaa gattgttatc aggcggacac gctatcattg
      421 ctgcctggtg tgaaaataat atcgagattc gggacgggga tagataatat tgatcttcgt
      481 gcagcacaac aatccggtat tgtagtcaat aatgcggttg ggattaattc aaatgctgtc
      541 gcggaattta tcattggact tatcttcgcg agcatgagaa atattcccgg cagctatcat
      601 gcgatgcaaa atggctactg gggtgagtcg catggctatg aattacaagg caaacggatt
      661 ggcatggttg gctacggcaa tataggtaaa accctggcaa aaaggttatc cggttttgat
      721 gttgagcttt tagcttatga caaacaaccc gattatcagg ttgctgacaa agttggagtt
      781 cagtttgtat caattgaaga tatctttatg cagtcgcatg tcatcattgt tcttttgcct
      841 ttttctcctg agctggagaa cttcattagt cataaatatt tgtcgatgat gcgcaatggt
      901 gctctaatca tcaatgccgc aaggggaaag ttgctggatg agggcgcttt actacaggtg
      961 attgaagaac gaaatgtgtt tgcggcgctg gatgtgttta gctctgaacc gttggcgcaa
     1021 tttagcccac tgctacatgc caaaaatatc attacaacgc cgcatattgc ggccgccacc
     1081 gttgagtcat accagcaaac cggtacacac gttgcccagt cgataattga ttacttcgca
     1141 ggaagggaga taaaaaacgt gttgtgagtt cagcgaacga agtttttaaa tacaaaaaaa
     1201 ccgcaatttg tggaacacat tgcggtttat cagcattcta ag
//
LOCUS       DAJVUY010000330         1236 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.338, whole genome shotgun sequence.
ACCESSION   DAJVUY010000330 DAJVUY010000000
VERSION     DAJVUY010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.338"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(41..166)
                     /locus_tag="OQQ72_004304"
                     /pseudo
     CDS             complement(41..166)
                     /locus_tag="OQQ72_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="receptor for colicin S4; incomplete; partial in the
                     middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
     gene            complement(471..641)
                     /locus_tag="OQQ72_004305"
     CDS             complement(471..641)
                     /locus_tag="OQQ72_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001710241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013797.1"
                     /translation="MVRLPPVVMSAKSATARTTIAREDAEDHQVKLSAQKLEELLASM
                     VKDEVDRNDGIY"
     gene            complement(756..1024)
                     /locus_tag="OQQ72_004306"
                     /pseudo
     CDS             complement(756..1024)
                     /locus_tag="OQQ72_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000937495.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
     gene            1081..>1236
                     /locus_tag="OQQ72_004307"
     CDS             1081..>1236
                     /locus_tag="OQQ72_004307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCS2013798.1"
                     /translation="MVKSMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHYLEH"
BASE COUNT          337 a          288 c          244 g          367 t
ORIGIN      
        1 ttattgaccc cgtatattac ggggtcgttt ttgtgcggaa ttaaaaacga tatcctgctg
       61 agaacataaa cacccacgga tcgaggcgta cgctatcatg ttgctgtgca ccgcccagct
      121 tataattggc ggtggtatcg atatccatgt accagactgg taggtttcaa aaaacacaat
      181 aaccaattgt atttgaagca aaaaacaaga ctttgagatg ttttttttgt accttttttt
      241 atgtttttaa ctgtctgatt ttattgaaat cttttttagt tttgcagaag gaatttttta
      301 cttgattgta actttttcgt ttttttgggg gctaattgac gcgcaatgct gggcggggag
      361 cgcacagcca aaaaaaccga aattgaccgc taattactgc caatcatcat cgctctgatt
      421 gagcgtaaat cattcaggtt attcagttct tccttctgct ctcgctgacg tcaataaatc
      481 ccatcattgc gatcaacctc atccttaacc attgatgcga gcagttcttc cagtttctgc
      541 gctgacagct ttacctggtg atcttcagca tcttcccggg ctattgtggt tcgcgcagtg
      601 gctgattttg ctgacatcac cacagggggc agacggacca ttgaaccatg gcctccggaa
      661 caaataaggg caaaaataac aaccactatc gaaagcttac aaactaaccg cagcacgttc
      721 ctgcatacga cgtgtctgcg gcataatccc aatgattact ccctgacagg atttgcaggc
      781 cactcaatat cggtgcagtt gatgtatcaa cacgattcaa caatacccga tatttattcc
      841 atgcctccag caacgatctt tcttcctccg ttgcgatttc cagatctaca gcatcctgca
      901 gtggcgcaat atactcactg aattcctgga tgtagaactg tgtggtgacg gtcttccagc
      961 cattcgtctc ctgctgtatc gaagcatacc aggctatttc aatatcgcta tgctgcggca
     1021 gcatttaacc ccttgtaatt catcgccata attgatttaa ttcacaaata aaactataac
     1081 atggtgaaat caatgaaaaa aaacacagat gatggggcta aaatttacac accacttacc
     1141 ctaaagcttt atgactggtg ggttttggga gtatcaaatc ggcttgcatg gggatgtcct
     1201 acaaaggaac accttcttcc acactatctg gaacat
//
LOCUS       DAJVUY010000331         1204 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.339, whole genome shotgun sequence.
ACCESSION   DAJVUY010000331 DAJVUY010000000
VERSION     DAJVUY010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.339"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..239
                     /locus_tag="OQQ72_004308"
     CDS             <1..239
                     /locus_tag="OQQ72_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS2013799.1"
                     /translation="AQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTD
                     KWQRRTHSLWRHQAWHASAFTGIYNDLVAASTFV"
     gene            176..778
                     /locus_tag="OQQ72_004309"
     CDS             176..778
                     /locus_tag="OQQ72_004309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000090847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS2013800.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLNE
                     GWYQVRIAGRDAGENELSARLNEPLANGAVIHIVPRLAGAKSGGVFQAVLGAALIATA
                     IWMPGISIAFSNILFSMGAAMTLGGVAQMLAPKPKTPRTQTTDNGKQNTYFSSLDNMV
                     AQGNVLPVLYGEMRVGSRVASQEISTADEGDGGQVVVIGR"
     gene            851..1189
                     /locus_tag="OQQ72_004310"
     CDS             851..1189
                     /locus_tag="OQQ72_004310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001332187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013801.1"
                     /translation="MNKTILFCTIIALTGCKSLDYVKSGKPVMEGNSLKNIDELSGCI
                     SRQWAGNGTPITSLPIENGVSLLVPQAMGGYDVVLDIKKAGNGSSFTLYERVPALTPK
                     IFADSVNACK"
BASE COUNT          306 a          265 c          318 g          315 t
ORIGIN      
        1 cggcgcagcc gggcgatgtg ctgctgtgct gttttggttc atcggtgccg aatcatgccg
       61 ccatttactg tggtgacggc gagctgctgc accatattcc tgaacaactg agcaaacgag
      121 agaggtacac cgacaaatgg cagcgacgca cacactccct ctggcgtcac caggcatggc
      181 acgcatctgc ctttacgggg atttacaacg atttggtcgc cgcatcgacc ttcgtgtgaa
      241 aacgggggcc gaagccatcc gggcgctggc cacacagctc ccggcgtttc gccagaaact
      301 gaatgagggc tggtatcagg tgcgcattgc cgggcgtgat gcaggcgaaa atgaattatc
      361 tgcccgtctt aatgagccgc tggcaaatgg tgccgtgatc cacatcgtac cgcgtctggc
      421 gggtgccaaa agtggtggtg tttttcaggc agtgctgggt gcggcgctga ttgctacggc
      481 aatctggatg ccaggaatca gtatcgcttt cagtaacatt ctcttttcta tgggggcagc
      541 gatgacgctt ggtggtgtcg cacagatgct ggcccctaaa cccaaaactc cacgtacaca
      601 gacaacggat aacggcaaac agaacaccta tttctcctca ctggataaca tggttgccca
      661 gggcaatgtc ctgcctgttc tgtacggtga aatgcgcgtg gggtcacgtg tggcatctca
      721 ggagatcagc acggcagatg aaggggatgg tggtcaggtt gtggtaattg ggcggtaata
      781 ttatttactc atgttctaac tgatttaata tttatatcga acactgataa ttattctatt
      841 ggttagctat atgaacaaaa cgattttatt ctgcacgatt attgccttaa caggatgtaa
      901 atctttggat tacgtaaaat ccggaaaacc tgtaatggaa ggtaattcat taaaaaatat
      961 tgatgaattg tcaggctgca tatccagaca atgggctggt aatggaacac ctataacatc
     1021 ccttcctatt gagaatgggg taagcctttt agttccacag gctatggggg gatatgatgt
     1081 tgtgcttgat atcaaaaaag caggaaatgg cagtagtttt actctttatg aacgtgtacc
     1141 agcattaacg ccaaaaattt ttgctgatag tgttaatgca tgtaaataat agttaatcct
     1201 gccg
//
LOCUS       DAJVUY010000332         1199 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.340, whole genome shotgun sequence.
ACCESSION   DAJVUY010000332 DAJVUY010000000
VERSION     DAJVUY010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.340"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ72_004311"
     CDS             complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ72_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HCS2013802.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNV"
BASE COUNT          341 a          214 c          259 g          385 t
ORIGIN      
        1 ttaacattcg tacaaatggg caatgtgatt atattttcgg gtaatgaagt tagtaggtta
       61 ttggaaacat ccagtgtcaa tagttcttgc ggtaatctgg ataatctgcg tagttgattt
      121 tcacctacct tcaaatattt taagcgctga ggaaattctg gtagttcctg tagtctgttg
      181 ccggaaacaa agagttcttg tagtctatga ggcaattcag gcaagacagt aaggcgatta
      241 ccttcaatac gtaatattgt tagcgttgat ggaagctctg gtaacgtctc cagactatta
      301 aaacgtgccg agagtgattg taaatatggt ggtaatgatg gcagacatga caaatttcga
      361 ttgaatgaaa tattaagctt aatcagttga gatggaagtg tcgggagtat attcaagttg
      421 ttaccattta catgaagttc tgtcaaaagc ggagaatttt caggtaggga gattaactca
      481 ttgttggaaa tattaagttc acgtatatgc aaagggagtg gtggtaaaga acgtagtttc
      541 agtaagctta aattgagaac aggctcccgg gtatccagac atattttcaa taatcgaacc
      601 gcctggatgc gattttctgt tgttgttcct tccctagccc agtcatccca gatgcggtgg
      661 taatctctgg tacactgttc ttctaccgat aaacgagata tacatgataa gccacaaagg
      721 gaacgaaaaa aagaatgatt gttgatcggt ttcatttatt aacccctcac tattcatatc
      781 ttggtctatt aatgcaaata aaacgagaaa gtctttaaaa aaacaatcct agagctttat
      841 cggcgttttc attccagctg gaggaatatg ttcctgtctt tccagtaacc gtcgattgtt
      901 atatcagtct acccatgtta atgtgaccag ttctactttc atccagtttg gattgatctt
      961 tatcccctat attttcaaac aatttttatc atttaactca ttactgtctc gatattccca
     1021 tagcaaacga tctggttggt tagcccctca aaaaagtcag ttgcacgccg taaatccctg
     1081 ccggtattga gcgaggattt acgggttgtt gttaaggtcc gtaatcgggt cacagttttt
     1141 ccggagtcaa tccggtctgc ggtttatgct tatgcgacgt gattatgaat ggtgcagtc
//
LOCUS       DAJVUY010000333         1178 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.341, whole genome shotgun sequence.
ACCESSION   DAJVUY010000333 DAJVUY010000000
VERSION     DAJVUY010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.341"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..743)
                     /locus_tag="OQQ72_004312"
     CDS             complement(<1..743)
                     /locus_tag="OQQ72_004312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS2013803.1"
                     /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN
                     LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLALLPHAHQQQNPPQEETVVSIAVDP"
     gene            complement(745..1023)
                     /locus_tag="OQQ72_004313"
     CDS             complement(745..1023)
                     /locus_tag="OQQ72_004313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013804.1"
                     /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEW
                     LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR"
BASE COUNT          259 a          315 c          335 g          269 t
ORIGIN      
        1 tccggatcaa cggcaatgct gaccaccgtc tcttcctgtg gtggattctg ttgctggtgg
       61 gcgtgaggca gcagcgcaag attttttgtg cgctgcttca gtatgctggt ggcggtctgc
      121 tctcccggca cgatgtcgct ttcacggtac attgagcgga ttttttccgc acgcaacccc
      181 agcgaacgac gtaatactgc ttccggtagc gcgtccgcca cctgattgcg gaccgcccac
      241 caggataatt cagccagaga taattcacgc tcctgcgtac cgcttattgc gtgaccgatg
      301 acgtcaatca tccatgctga caggttttga tgagcaagtt gctcgagtga ttcggatgtc
      361 tggtcacgca actggttgtc gcagtgccag cacaacacca ttgcgccggt accataacgg
      421 tgaatgacgg tttcgctgtg atgataatcg ccgtgtggcc actggcagga tttaatatgg
      481 cgcaacagcc agtcagacaa tgcaccagca ccaccagcag cacgaatcac ccgtgcgtta
      541 ctgaaaaacg gcagcaatgt tttgtcttcc actagcggct ggcgaacggc aggaacgacc
      601 ccggacggca gattacgcat gcttttcggt tccggctcca ccagtacccg ggtattgtgg
      661 aataccggca tggattcacg gcctggctta aggaccacca gcccgagttc cggaaccaga
      721 acaggtcgaa gtaatacccg cacattacct ccagatccgt tgctggaatg tgcaggacgg
      781 acgcggtggc cgttcggaat aagggagcct gacgaagatt atccagtgac gataatcgag
      841 actgagggct ttcttaatct cgtatccgtg tctgcggtag cgctgaatca gccattcagc
      901 ctgttcttcg gtgcaggggt cgtgctgata ccagtcagat ttgaatgcat gagaacgccg
      961 cccgtgcctg ctggcaggcg cggcagagtt atccgaattg taaaatttgg tatcgtgcgc
     1021 catctgtttt ctctgctggc gcagcaggtg ccagttgttc aggctgacgg atggattgta
     1081 aaccagaacg accagaaaaa acaaaacccg ccgaagcggg ttaagtgcgg gtgcgttgag
     1141 gatgcctgac acatcagcgg tggcgaggga tttctccc
//
LOCUS       DAJVUY010000334         1160 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.342, whole genome shotgun sequence.
ACCESSION   DAJVUY010000334 DAJVUY010000000
VERSION     DAJVUY010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.342"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..925
                     /locus_tag="OQQ72_004314"
     CDS             <1..925
                     /locus_tag="OQQ72_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HCS2013805.1"
                     /translation="RRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQA
                     RFVKAFVMGNKNDVMDARAIWMAVQQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQ
                     INALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSL
                     IEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLV
                     PKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKKRRPASVAI
                     VAMANKLARTVWAITAHDRKYDRNHVSIRPY"
BASE COUNT          324 a          262 c          333 g          241 t
ORIGIN      
        1 gcgtagacag gattttctga cgttcttcgg caaccgtgag ccatgcctga ttggtatgga
       61 ggcctgtgga ggttctcagc actgggcacg ggaactgaca aaacttggtc ataaagtccg
      121 gttgttgcag gcccgcttcg ttaaggcatt cgtcatgggc aataagaatg atgtgatgga
      181 tgcccgggct atctggatgg cggttcagca gccgggtaaa gaaatcgccg taaaaacaga
      241 agaacagcag tcggtactgg ttctgcaccg tacccgcatg caactggtga agttccggac
      301 cgcacaaatt aatgccctgc acgggacgtt actggagttt ggtgaaacca tccacaaagg
      361 ccgggcagcg atggagcggg agttccccga agcactggaa cggatgaaag agagactgcc
      421 accgtatctc attatggttc tggaaaacca gtacaaccga ctgaatgagc tggactcact
      481 gatagaggat attgaaaaac agcttaccag cgtggcgagg cagaatgaaa cctgtaagcg
      541 gttgctggat attcctggcg ttggaccact tattgcgacg gcagcggtgg ccaccatggg
      601 ggaagcatca gcgtttaaat cggggcgaga gttcgccgca tatgttggtc tggttccaaa
      661 acaaactggc tccggaggga aagtacgtct gctggggata agcaaacgtg gtgacactta
      721 tctcaggaca ttatttatcc acggtgcaag agcggtggca ttagtagcta aagagcctgg
      781 cccgtggata accgaactga aaaaacgtcg tccagccagt gtggcaatcg tcgccatggc
      841 aaacaagctg gcacgaacag tatgggcgat aaccgcccat gaccgtaagt atgacaggaa
      901 ccacgtcagt atcagaccat attaatcgct gataccatta aacaatgaac tcttaacaaa
      961 agggtgaatg ctgaaaggtt gctatggcgg ccagagtgat gacaaagaca ggtaagaccg
     1021 tgactcacta aacctgaaca gtattttggg cttgaagtcc gccgtgaaaa taaggggtga
     1081 gtcggcgaat tacatagggg ctcgcagcgt tacggctgca ataaagccgg atataaagct
     1141 gcaacctacc cgtcatgtca
//
LOCUS       DAJVUY010000335         1157 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.343, whole genome shotgun sequence.
ACCESSION   DAJVUY010000335 DAJVUY010000000
VERSION     DAJVUY010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.343"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..263)
                     /locus_tag="OQQ72_004315"
                     /pseudo
     CDS             complement(1..263)
                     /locus_tag="OQQ72_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(378..1016)
                     /gene="ospI"
                     /locus_tag="OQQ72_004316"
     CDS             complement(378..1016)
                     /gene="ospI"
                     /locus_tag="OQQ72_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspI"
                     /protein_id="HCS2013806.1"
                     /translation="MINGVSLQGTAGYEAHIEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
BASE COUNT          340 a          284 c          175 g          358 t
ORIGIN      
        1 agcaagcgct gtaactcttt tatttgtttt atagcggcag ccagttctga ggcaggaacg
       61 acatcctctc cggcagcaat agcagtgaga cttccttcca gatattattt tttccactta
      121 agcaacaggc tgggctgaat accatgcaaa cgcgccacat gggacaccgt catgccaggc
      181 tccattgtct gctgaataat ggcaattttt tcctgaggag ttttacgttt acgaagctcc
      241 agccccagca aagttccagt catctcaaaa ttagaactag tgttagacat atatccaagc
      301 ctatctctta ttttaagata catccactgt ctggcgtttc aaggggccgg ctcaaatcta
      361 tgtacaggct ctcagcatca gcaaagcctc ttactcttcc aactactact gttagcatag
      421 tgatcaaatt cctgatcaga tacatgaatt acctgaaccg aactattttc atctacaaat
      481 gcatctggcg atttttctac aggatcataa agattaaatc cctttcctgt ttgaacatcc
      541 aaaaacataa ttttttcacc atcgttaaat ccagctatcc aatgagtggc ctgttcaata
      601 gaaatcatta ctacacttcc ttttgaagtg ttttgtaaaa tattttctgc aatacgctca
      661 cgaaatttac tataagtttc attaggatgt gacactatgc cttcactatc aatttgctct
      721 aaatgcctat gaaaaaatcc ggtcatatac tctgatattt cattaggtac gggagcctct
      781 cttactccat accctaacat agccatacaa gcatgaagcg cacaccctga acagttacca
      841 tccccaccag acggatttat cattttctgt aaagtcgctg ccaattcaga atctttatcc
      901 atatcaccaa gacttttaga gtttaaagat tccagcaatt ttttaacatt tacatttccc
      961 tcctctatat gtgcctcata tccagcagtt ccctgtaacg acaccccatt aatcatattg
     1021 tatcctgaca gtatatatac tcactatatt ttcttcataa caaatatccc tctgatatga
     1081 caacaaaaaa cggagccgga ttcctgtttt tgtgaactgc agctattcga gtctaaaaag
     1141 tgatccactt accacca
//
LOCUS       DAJVUY010000336         1150 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.344, whole genome shotgun sequence.
ACCESSION   DAJVUY010000336 DAJVUY010000000
VERSION     DAJVUY010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.344"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            213..944
                     /gene="bluR"
                     /locus_tag="OQQ72_004317"
     CDS             213..944
                     /gene="bluR"
                     /locus_tag="OQQ72_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor BluR"
                     /protein_id="HCS2013807.1"
                     /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE
                     EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA
                     RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK
                     PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM
                     APTRRQNELLQHWGEQGYKVIFHAP"
BASE COUNT          335 a          261 c          254 g          300 t
ORIGIN      
        1 aaaaataatt ttcagcacat tctttcacat gatttcagta aatcatcgtg aaaatgaata
       61 cgttacgttt aaatttaatc cacattaaaa ataatgtttc atccaattta gctgaaatct
      121 tatttatact ttgtacaatt ttagcgtata ttgtacaaag tattattggg tcgtgtacag
      181 gcgacggaga tttgtgaccg caaggaggaa ttgtggctta ttacagcatt ggtgatgttg
      241 ctgaacgttg cgggattaat cctgtcactc tccgggcctg gcaacgccgc tacggtttgt
      301 taaaaccaca gcgcagtgaa ggcggacacc gactctttga tgaagaagac atacaacgca
      361 tcgaagagat caagcgttgg ataagtaatg gcgtccctgt aggcaaagtt aaagcattac
      421 tggaaaccac cagccaggat acggaagatg actggagccg cctgcaagaa gagatgatgt
      481 caattcttcg catggctaat cctgccaaac tacgcgcgag aattatttca ctgggtcgag
      541 agtacccagt agatcaattg attaatcatg tttaccttcc tgttcgccag cgtctcgtgc
      601 ttgatcacaa cacctcccgc attatgagca gtatgtttga cggcgcatta attgaatacg
      661 cagcaacctc gcttttcgaa atgcgccgta agcccggtaa agaagccatt ctgatggcgt
      721 ggaatgttga agagagagca cgattgtggc tggaagcatg gcgtttatca ttgtcaggat
      781 ggcacatttc tgttcttgct gatcccattg aatcgccgcg cccggaactg ttcccgacgc
      841 aaacattgat tgtctggaca ggcatggcac caacgagaag gcaaaacgaa cttttacaac
      901 actggggtga gcaaggttat aaagtcatct ttcatgcccc ctaatttcac ctttatcccg
      961 ccccttagac agaatgttat aatctgaacc cacaacagca tttgtaccgg agctgatccg
     1021 ttgcaaaatg ctcaccggga gaattcaggt aatccctcta tcacactctg tacatatcac
     1081 agccaaagga cagaccagat tgaagtggta aaaccgatcg tgcacactac gcagtctcac
     1141 aactaacaag
//
LOCUS       DAJVUY010000337         1130 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.345, whole genome shotgun sequence.
ACCESSION   DAJVUY010000337 DAJVUY010000000
VERSION     DAJVUY010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.345"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..564
                     /locus_tag="OQQ72_004318"
     CDS             <1..564
                     /locus_tag="OQQ72_004318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS element protein"
                     /protein_id="HCS2013808.1"
                     /translation="DEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPIS
                     EIDPQGLNPLILGVVALMSCGLFSSGGVIQSGQQRRDQYGRKVNPEADKLTDEHKSGV
                     NPGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINLACASVRKQINNQC
                     FGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            561..1064
                     /locus_tag="OQQ72_004319"
     CDS             561..1064
                     /locus_tag="OQQ72_004319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013809.1"
                     /translation="MKKIIFSNESAVYDELMIHFPCQPLPHISNDIIGLDELDVVYNF
                     FQKKQWNEIANNLKIKDDSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESD
                     FIQQYLCPEYRDYDDFLNFVFNFSDIQLSIIAQFMSYESDAGFFYASKACMDFWEDYS
                     PLLHKKI"
BASE COUNT          368 a          174 c          236 g          352 t
ORIGIN      
        1 gatgaggagt ccggcctgta ttacaaccgc caccgctatt atgacccgct gcaggggcga
       61 tatatcactc aggacccaat tgggctgaag gggggatgga atttttatca gtatccgttg
      121 aatccgatct cagagataga cccacaaggg ttaaatccgt taattcttgg tgttgtagca
      181 ctgatgagtt gcggtttgtt ttcatcaggt ggtgttatcc aaagtgggca acaacgcaga
      241 gatcaatatg gacgtaaagt taatccagaa gccgacaaat taacagatga acataagtca
      301 ggtgtaaatc ctggaggtaa ctgtagtccc cagaacctga gtgacttaca aaatgaaaaa
      361 aacagattat gtaaccagtc tagagcttgc gctcctcaga tgctgagaaa agaaatattg
      421 agacggtacg agataaattt ggcgtgcgct tcggtcagaa agcagattaa taatcagtgc
      481 tttggtggtg gagataaggc ccatatggaa gaagagaata aagcatataa aacagcagct
      541 gattgcagtg gcttaataaa atgaaaaaaa taattttctc taacgagagt gcagtctatg
      601 atgaacttat gattcatttt ccatgccagc cattacctca tatttcaaat gatattatag
      661 ggctggatga actggatgtt gtatataatt ttttccaaaa gaaacaatgg aatgaaatag
      721 ccaataattt aaaaataaag gatgactctt atgctttaga gttaggaatt acattcctcc
      781 ctgagaaagt attctgctat tacatccctc tgtatattta tgtctcgttg tttaataaga
      841 atgatttttg ggtttttgaa tccgatttta ttcaacaata tttatgtcct gagtatcggg
      901 attacgatga ttttttgaat tttgttttta atttttcaga tatacaacta tctattattg
      961 cacagtttat gtcttatgaa tcagacgctg gattctttta tgcaagtaaa gcttgtatgg
     1021 atttttggga agattattca cctctattac ataagaaaat ttaatcgtaa aaggtataaa
     1081 tggtttaata aaaaacttgt ctactcgttg gagtagatga aaaataagat
//
LOCUS       DAJVUY010000338         1123 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.346, whole genome shotgun sequence.
ACCESSION   DAJVUY010000338 DAJVUY010000000
VERSION     DAJVUY010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.346"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(1..483)
                     /locus_tag="OQQ72_004320"
     CDS             complement(1..483)
                     /locus_tag="OQQ72_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS2013810.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCIQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(474..776)
                     /locus_tag="OQQ72_004321"
     CDS             complement(474..776)
                     /locus_tag="OQQ72_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS2013811.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
BASE COUNT          341 a          278 c          237 g          267 t
ORIGIN      
        1 tcagacttta taaaacaagg tattaggtgc cacaactgac tgaacaaaac caaaacgctc
       61 ataaaatgct ctggcgtcat catcaattgc atgtaccata acagccttaa tgccaacctg
      121 atcagccaga ttgacaaccc ggtgaatggc atcacttagt agccatttac cgaaaccatg
      181 cccctggata caaacatcaa cagccagacg ccctaacaga acaacaggga caggattggg
      241 catgttatgc cgcaaactgc gaccaagctc ggcatgagtg acggaaccag tagctaatga
      301 gtagtatccc acaacacgta aagtatcctc caagcaaata acgaacgtgc gagaagcatt
      361 gagcatctgg tttttcatag cccgaccacg taaccagtta cttagcacct catttccaca
      421 gtcaaatggc tgaagtatat gctcatccgt caacaatgct ggcgcggtga catttatttc
      481 cattcaggct ttaccgccat cagacgttca cgcccttctg cattctgcac aggagcttcc
      541 agttgcgtaa taaacgaatc ataacgttcg ttatccagca caaataaacg ttgatccagg
      601 ataatgtttt tagcttcctg gtacgccagt tccatgatga aatcggtacg gttcttattg
      661 accaagctcg cagcataatc aataacggct cgttcctcat cagttgcccg gatgttaatc
      721 tgatgttctc gcggtgtttt acggacgctt gcagctgtag acataaaaac ctccattggt
      781 aacaatttgc tatgcaatta atgttatcgc aaatggtaac agaacgctat acagaatcac
      841 ttacgggaaa agcgatcccc tgataaaaac aatggcagag acctgaacat tgtgacgatg
      901 atctgtgtcg gcgcacaaat catgtctgat tacggccgtt taatgtgatt ttgataatga
      961 aatgcctgaa ccacggcagc ctggcggctg caaatcgggg tgtggcagaa tatgagcttt
     1021 cagagtaacc atccagaatg agttcccatg tcacacaacc tggagcacca gaaagtccac
     1081 accagaatgg tgaaagaggt tctgaaagcc gtcgccagag cca
//
LOCUS       DAJVUY010000339         1117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.347, whole genome shotgun sequence.
ACCESSION   DAJVUY010000339 DAJVUY010000000
VERSION     DAJVUY010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.347"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            13..171
                     /locus_tag="OQQ72_004322"
     CDS             13..171
                     /locus_tag="OQQ72_004322"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013812.1"
                     /translation="MYLSRISEAISLSAGEVAHRLIVPSSDIDLGETELPVLGEITWQ
                     AYDPARSK"
     gene            171..761
                     /locus_tag="OQQ72_004323"
     CDS             171..761
                     /locus_tag="OQQ72_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HCS2013813.1"
                     /translation="MDSLQDDYTKLLYGLMQPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLYPSHTVVLFSYPDEDEDAQD"
     gene            748..>1117
                     /locus_tag="OQQ72_004324"
     CDS             748..>1117
                     /locus_tag="OQQ72_004324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000554745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013814.1"
                     /translation="MHRIDTLTAVKDKFGPGKNGFTDGNLRTGRLATWLNSAMWNAIQ
                     EEICGVIEKAGIELNKEEHDQLYKAILLLVGGAINEEALLIKNNLSDVEDRDEAVENL
                     GLKPTVDKAKNAVQRDGDTMT"
BASE COUNT          284 a          245 c          328 g          260 t
ORIGIN      
        1 ccagaggggc gtatgtatct gtccagaatc agtgaggcca tcagtttgtc tgctggtgaa
       61 gtggcccacc ggttaatcgt cccttcatcg gatattgacc tgggggagac cgagcttccg
      121 gtgctcggcg agatcacctg gcaggcttat gacccggcaa ggagtaaata atggattcgt
      181 tacaggatga ttatacaaag ctgctgtacg gactgatgca gccggggcct gcatggtcag
      241 ataccgacgg tgtacttgac ggtctggcac catcgcttgt gcgtgttcac cagcgggctg
      301 atgaactggt gattgaaatc gatcccggtc agtccacaga gctgattgaa cgttatgaag
      361 aattgtatgg tttacctgat tcctgttccc ctgtcggaac ccagacatta cgccagcgtc
      421 agcaacgtct tgaagcaaaa gccaatgtgg ctggtggcat aaatgagcag ttcttcctgg
      481 atcagcttga ggcgctggga tataccggcg taacgatcga acagttccag cacctggatg
      541 caagccccga tccggaatgg ggagatcgct ggcgttattt ctggcgtgtg acgttgccgg
      601 tggatgccgg tgctcagtgg cagacatgca cggacgcctg caacacaccg atccggacgt
      661 ggggggatac ggttgcggag tgcgtgatta ataaattata tccgtcacac accgtcgttt
      721 tattttccta tccagatgag gatgaagatg cacaggattg atacgctgac tgcggtaaaa
      781 gataagtttg gtccgggtaa gaacggattt actgacggaa atcttcgcac aggacgtctt
      841 gctacctggc tgaacagtgc catgtggaat gccattcagg aggaaatctg tggtgtcatt
      901 gagaaggccg ggatagaact gaataaagaa gaacacgacc agctatataa ggctatatta
      961 ttgctggtgg gcggtgcaat taacgaagag gcattgctga taaaaaataa cctttcggat
     1021 gtggaagaca gggatgaggc tgttgaaaac ctcggattaa aacccacggt ggataaggca
     1081 aaaaatgccg ttcagcgtga tggcgacacc atgaccg
//
LOCUS       DAJVUY010000340         1116 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.348, whole genome shotgun sequence.
ACCESSION   DAJVUY010000340 DAJVUY010000000
VERSION     DAJVUY010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.348"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..161
                     /locus_tag="OQQ72_004325"
                     /pseudo
     CDS             1..161
                     /locus_tag="OQQ72_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            178..696
                     /locus_tag="OQQ72_004326"
                     /pseudo
     CDS             178..696
                     /locus_tag="OQQ72_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          324 a          260 c          245 g          287 t
ORIGIN      
        1 gtgacagact ggcacgtctt cgtaaggagc tgaggctgca ctgtaagcag aaacgcaagt
       61 tcagggcgac cacaaactct gaccacaatc tgccggttac gccgaatctg ctgaatcaga
      121 actttacgcc cacagcacct aatcaggtct gggtcgcaga ttcagttgtc caggccttcc
      181 gaaatcaacc gactgaaggc gctggtcgcg aaactgcagc gtatgcagtt cggtaaaagc
      241 tcagaaaaac ttcgcgcaaa aaccgaacgg cggatacagg aagcacagga gcgagtcagc
      301 gcacttcagg aggaaatggc ggaaacactg ggtgagcaat atgacccggt actgccatct
      361 tccctgcgcc agtcttcagc ccgtaaaccg ttaccagcct cacttccccg tgccccccgg
      421 gtcatccggc cggaagagga atgctgtccg gcctgtggtg gtgaactcag tccactggga
      481 tgtgatgtgt cagagcagct ggagcttatc agcagcgcct ttaaggttat cgaaaaacaa
      541 cgccctaaac tggcctgtcg ccggtgcgac catatcgtgc aggcaccggt gccttcaaaa
      601 cccattgcac gcagttatgc cggagcgggg cttctggccc atgttgttac cggaaagtat
      661 gcagaccatc tgccattata ccgccaaagt gatctactat tccacacagc tatttagctc
      721 tctttttgtt gagctcccat gattctttca tttattgtta ctaattattt tatgttatca
      781 tgatgttaga acacgctctg ctctgtgtct ctattttatc tatcatattc tgaggattaa
      841 ctacataaca aggcgcaaga tatatatcca aaaacaaata ataccgttgc aataattcct
      901 ttcagtaaag gaggtgtgat taatttcagg ggatttcaga gtgaaaattg tacaacatat
      961 tgaaatatgt tcatttcgtt ataatacaca caagaaaata ttaagttaga taatatattc
     1021 taaataacca tagataaaaa tgcacataat ggggaatatt ttatgaaaat acctgaagca
     1081 gtaaatcata ttaatgttca gaataatatt gatctt
//
LOCUS       DAJVUY010000341         1110 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.349, whole genome shotgun sequence.
ACCESSION   DAJVUY010000341 DAJVUY010000000
VERSION     DAJVUY010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.349"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(674..1090)
                     /locus_tag="OQQ72_004327"
     CDS             complement(674..1090)
                     /locus_tag="OQQ72_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013815.1"
                     /translation="MTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLE
                     AEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSE
                     ELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN"
BASE COUNT          288 a          281 c          194 g          347 t
ORIGIN      
        1 acatcgcctt ttgctgcttc atagcctgct tctccttgcc tttcggcacg taagaggcta
       61 acctacatgt gttcagcatg gattgagcct cagattaatg ttaagcgtct tgcaggacgc
      121 gtagtgttaa ctggggcttt tctctatctg ccttttggtg ttcatgcctg agacagatag
      181 cctcaagcac ccgcagtcat tctacttaac taagatttcc ctgcaaaccg tttttgtccg
      241 gcacagtaaa tatccaacta aaccaatagc gttcgctgta tttaccgcca gtattcaatg
      301 cacatgaccg ccatgaacac ccctaaaaaa agggcattta tatgtccaaa cattaatatc
      361 aaaacatcaa ttttttccat ataccttgct gtgaagatga tgggcataca tgatgcgaac
      421 aaccagaacg caacaaacaa aaactgcaat gcgtttttca ttattccccc tacaatcaat
      481 gtgcaataac atttaaacac acctcaattt ggccggacat ataaatatct aaaccagaaa
      541 aaatcactta catagcgtta caaactcttt agtctaaata ctcatcgtaa aacattcccc
      601 atacttatca gtccgttccg cgccaggtag cttattgcct tatctggcaa cctataatca
      661 ggtttccgct ttttcagttg gctggtcgtt taaccgacat agttaaccca ttaatctggt
      721 tgccggatgc tggtggattt tcgcgtttta gttgttcata aaagtgcaca gctttaacca
      781 gttcttctga tgtaaccggg actggtgggg cagtgaataa ggcctgaatt tcatagttcg
      841 gcctgtcgtt acaatcctct tttttcggta catatttcca gtcaccaacc cacaactccc
      901 cctgagagtc cataacacct tttttcacgt agcgatatcg ccacgctatc ggctctgctt
      961 ccagcgatgc ccgtgcaatt ttgaataact cgccctctac tcgcgccatc cctgaattgg
     1021 ggtggcattt cgtaatcgct atttttaatt tggcttcttc gattaattgt tcttttgtta
     1081 attcagtcat tttcattacc gccctttcag
//
LOCUS       DAJVUY010000342         1093 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.350, whole genome shotgun sequence.
ACCESSION   DAJVUY010000342 DAJVUY010000000
VERSION     DAJVUY010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.350"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(199..465)
                     /locus_tag="OQQ72_004328"
     CDS             complement(199..465)
                     /locus_tag="OQQ72_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013816.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVGIVEKQSQRHSNI"
     gene            complement(647..1045)
                     /locus_tag="OQQ72_004329"
                     /pseudo
     CDS             complement(647..1045)
                     /locus_tag="OQQ72_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612066.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
BASE COUNT          282 a          224 c          226 g          361 t
ORIGIN      
        1 gcgtccctgc actcgaataa tggtgaagaa agcatgatga atatatcacg ataacgttca
       61 gtatgtatcg aggatagatg gagttactcc tctctgaaat agaattactg ctctactttt
      121 tctgtttcca gaaattatta gtaacaaacc ctgatatatt cttttgaaaa tggagcttaa
      181 acgagtctga aattaacttc agatattaga atgccgttgg ctttgttttt caacaattcc
      241 tacttcattt atctttgtca accattgcat ttctgtagca gtgaatttca acgttttcgt
      301 ccggttggta gcaggtattt gtaattcgta tatagctgct tttttattga aaacagtata
      361 tccatctgta gtaacagtag aagataataa tacaggattt gacacttcaa ggatgatatt
      421 ttcttgtttt tgtggaaggc aagggaatat agtttgtgta agcatattgc ttccttatgt
      481 tatattttag taaagaattt attttttaca ttatagtcgg ctaaatgaag tttactgtaa
      541 aaaaacgata cttttttcgt aagcgatgag atgtggagcc agaaaaatgg ctgcgttacg
      601 tcattgaact gtccttgacc cacgatattc agacagtcgt tgtatcttaa gttgacatta
      661 cccgctgacg tcgatattcc cttggtgaga gataacccaa cgcactatgc ggatggtttt
      721 cattgtaatg ctcgatcgcc actgcaaggt tatgcaatgc cattcttggt ttcggcatga
      781 acgcgatgca gtcttccttc atcgttttca cgaaccgttc tgctattcca ttactctgag
      841 ggctactgac tgccgtcgtg cagggctcca gattcaactc tctggcgaac tgccgtgttt
      901 catgagccgt ataagccgaa ccgttatcgg ccactggatt ggccgttccg gtcctttatc
      961 gccatatcgc tgacatgaca tcctgcaccg ttgctttgtc ataatctccc gtgcctgctg
     1021 cccagtctat ggcttcacga tcgcaatatg gaacgtaacg ctgtcatcgg gagaatcgtc
     1081 aatgcggcat tcg
//
LOCUS       DAJVUY010000343         1086 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.351, whole genome shotgun sequence.
ACCESSION   DAJVUY010000343 DAJVUY010000000
VERSION     DAJVUY010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.351"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..978
                     /locus_tag="OQQ72_004330"
     CDS             <1..978
                     /locus_tag="OQQ72_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS2013817.1"
                     /translation="CEHLPLYRQSEIFARQGVELSRALLSNLVDACCQLMTPLNDALY
                     RYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQ
                     GKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYISTKS
                     ATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKC
                     RLRDAFRYIRKHWVALCNFSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERG
                     ALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNVALTNK"
BASE COUNT          275 a          267 c          314 g          230 t
ORIGIN      
        1 tgcgaacacc tgccactgta tcgtcagagt gaaatttttg cccgtcaggg tgtcgaactg
       61 agccgtgcat tactctccaa cttggttgac gcgtgctgcc agttaatgac gccgctgaat
      121 gatgctctgt accgttatgt aatgaacagc cgcaaagttc acactgatga cacaccagta
      181 aaagtgctgg caccgggcag gaagaaggcg aaaacaggat atatctggac gtatgtccgg
      241 gatgacagga atgccggttc gccagagcct ccggcggtct ggttcgccta ctcaccggac
      301 catcagggta aacatccgga gcagcacctt agtcccttcc ggggtatcct gcaggcagat
      361 gcgtttaatg gttacgatcg gctgttcagt gccgaacgag aaggcggcgc gttgacggaa
      421 gcaggatgct gggctcatgc gcggcgcaaa gtccacgatg tatatatcag taccaaaagc
      481 gcgacagcgg aagaagccct gaaactaatc ggtgagctgt acgccatcga gcacgaaata
      541 cgcgggttgc cggtgtctga acgcctggcg gtcaggcaaa tgcagagtaa accgctactg
      601 acttccctgt ataagctgat gcaggagaaa gaacacacgt tatcgaaaaa atgccgtctg
      661 agagatgcgt tccggtatat caggaagcac tgggttgcgt tgtgcaactt cagtgatgat
      721 ggtctggctg aggcggataa taatgccgcg gaaagagcgc ttcgtgcagt ctgtctcgga
      781 aagaaaaact ttatgttctt cggcagcgat cacggtggag agcgtggtgc gctactgtac
      841 gggctgatcg gcacctgccg actgaacggt atcgatccgg aagcgtatct gcgctatatc
      901 ctgagcgtac tgccggaatg gccttccaac cgtgttgacg aactcctgcc atggaacgta
      961 gcactcacca ataaataagc gtcaatacgg tgctccgttg acgcttacag tggatgcagt
     1021 ctaaatacag actttcgaac cggaaggctc agcgaaagct ggcgctggta aggaaacagt
     1081 atccga
//
LOCUS       DAJVUY010000344         1056 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.352, whole genome shotgun sequence.
ACCESSION   DAJVUY010000344 DAJVUY010000000
VERSION     DAJVUY010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.352"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..1033
                     /locus_tag="OQQ72_004331"
     rRNA            <1..1033
                     /locus_tag="OQQ72_004331"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          261 a          247 c          330 g          218 t
ORIGIN      
        1 actccgtgcc agcagccgcg gtaatacgga gggtgcaagc gttaatcgga attactgggc
       61 gtaaagcgca cgcaggcggt ttgttaagtc agatgtgaaa tccccgggct caacctggga
      121 actgcatctg atactggcaa gcttgagtct cgtagagggg ggtagaattc caggtgtagc
      181 ggtgaaatgc gtagagatct ggaggaatac cggtggcgaa ggcggccccc tggacgaaga
      241 ctgacgctca ggtgcgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
      301 ccgtaaacga tgtcgacttg gaggttgtgc ccttgaggcg tggcttccgg agctaacgcg
      361 ttaagtcgac cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg
      421 cccgcacaag cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctggt
      481 cttgacatcc acggaagttt tcagagatga gaatgtgcct tcgggaaccg tgagacaggt
      541 gctgcatggc tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc
      601 aacccttatc ctttgttgcc agcggtccgg ccgggaactc aaaggagact gccagtgata
      661 aactggagga aggtggggac gacgtcaagt catcatggcc cttacgacca gggctacaca
      721 cgtgctacaa tggcgcatac aaagagaagc gacctcgcga gagcaagcgg acctcataaa
      781 gtgcgtcgta gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta
      841 atcgtggatc agaatgccac ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac
      901 accatgggag tgggttgcaa aagaagtagg tagcttaacc ttcgggaggg cgcttaccac
      961 tttgtgattc atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg
     1021 gatcacctcc ttaccttaaa gaagcgtact ttgcag
//
LOCUS       DAJVUY010000345         1039 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.353, whole genome shotgun sequence.
ACCESSION   DAJVUY010000345 DAJVUY010000000
VERSION     DAJVUY010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.353"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            263..1039
                     /locus_tag="OQQ72_004332"
                     /pseudo
     CDS             263..1039
                     /locus_tag="OQQ72_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT          306 a          236 c          244 g          253 t
ORIGIN      
        1 cccttttgct tttatatctg cgtctaaaat aaaaatgagc cgcaggttaa ccgcaaaagt
       61 tacatgctca catagcaaaa agaatagcca acttcattat ggcttcagtg agatgtatgg
      121 tcgtaggatt tcatacattg acactggtta tacatacagt aaaaatactc tctactggag
      181 ggcatttttt atggcagtac gaaaactcac cactgggaaa tggctttgcg aatgttaccc
      241 cgccggacga agtgggcgtc gtgtgcgtaa acaattcgcc accaaaggcg aagcactggc
      301 ttttgagcgc cacacgatgg aagaaaccga agcaaagccc tggctgggtg aatcagtgga
      361 tcgtcgaaca ctgaaagacg tggttgagct atggttcaaa ctacatggta aatctctgac
      421 agctgggcag catgtctatg acaaattgct gttgatggtt gacgctctgg gcaatcctct
      481 tgcaaccgat ctcacctcta aaatgtttgc ccactatcga gataaacgcc tgacaggcgg
      541 gatctacttc agcgagaaat ggaagaaagg agcaagcccg gtcaccatta acctggagca
      601 aagctatcta agtagtgttt ttagcgaact atcccgtctg ggcgaatggt cgtatccgaa
      661 cccactggag aacatgcgaa aattcaccat cgcagaaaaa gagatggcat ggcttaccca
      721 tgagcagatt gttgaattgc tggctgattg caaacgtcag gacccaattc tggcactggt
      781 agttaagata tgcttaagca caggcgcacg ctagcgtgaa gccgtaaatc ttacccgctc
      841 acaggtgacc aaataccgaa ttacctttgt cagaacgaag gggaagaaaa acagaagcat
      901 ccctatcagt aaagagcttt acgaagagat catggcgctt gatgggttca atttcttcac
      961 agactgctat tttcaatttt tatccgtgat ggaaaaaacg tctatcgtgc tccctcgcgg
     1021 tcaactcaca cacgttctg
//
LOCUS       DAJVUY010000346         1037 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.354, whole genome shotgun sequence.
ACCESSION   DAJVUY010000346 DAJVUY010000000
VERSION     DAJVUY010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.354"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>1037
                     /locus_tag="OQQ72_004333"
     CDS             <1..>1037
                     /locus_tag="OQQ72_004333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS2013818.1"
                     /translation="ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRL
                     QLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQAL
                     PEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQ
                     TFHREAAGEFSGEITGVTDGAGRHFQLVLTTQAQRAEEARQQAISGGTEPSAFPDTLP
                     GYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVRSF
                     TYDDKYRGRMVAHRHTGRPEIRYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLN
                     RREVLHTQGEAG"
BASE COUNT          206 a          322 c          338 g          171 t
ORIGIN      
        1 gaaaccgaca tcgccctgcc cggcccgctg ccgttcatcc tctcccgcac ctacagcagt
       61 taccggacaa aaacgcccgc gccggtgggg agcctcggcc ccggctggaa aatgcctgcg
      121 gatatccgct tacagctgcg cgataacaca ctgatactca gtgataacgg cggcagaagc
      181 ctgtattttg agcacctgtt tcccggtgag gacggttaca gccgcagcga gtcactgtgg
      241 ctggtgcgcg gcggcgtggc gaaactggat gaaggtcacc ggctggccgc actctggcag
      301 gcgctgccgg aagaactccg cttaagtccg catcgttatc tggcgacaaa cagtccgcag
      361 gggccgtggt ggctgctcgg ctggtgtgag cgggtgccgg aagcggatga ggtgctgcct
      421 gcgccgctgc cgccgtaccg ggtactgacc gggctggtgg accgcttcgg gcgcacacag
      481 acgttccacc gcgaagccgc cggtgaattc agcggcgaaa tcaccggcgt gacggatggt
      541 gccgggcgtc acttccaact ggtactgacc acgcaggcgc agcgggcaga agaagcccgg
      601 cagcaggcca tttccggcgg gacggaaccg tccgcttttc ctgataccct gccgggttac
      661 accgaatatg gccgggacaa cggcatccgt ctgtctgccg tgtggctgac gcacgacccg
      721 gaatacccgg agaatttacc tgccgcgccg ctggtgcgct atggctggac gccgcgcggc
      781 gaactggcgg cagtgtatga ccgcagcaat acacaggtgc gtagctttac ttacgatgat
      841 aaataccggg gccggatggt ggcgcaccgt cacacgggcc ggccggaaat ccgttaccgt
      901 tacgacagcg acgggcgggt gacagaacag cttaacccgg caggcttaag ctacacgtat
      961 cagtatgaga aggaccgcat caccatcacc gacagcctga accgccgtga agtgctgcac
     1021 acgcagggtg aagccgg
//
LOCUS       DAJVUY010000347         1031 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.355, whole genome shotgun sequence.
ACCESSION   DAJVUY010000347 DAJVUY010000000
VERSION     DAJVUY010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.355"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..465
                     /locus_tag="OQQ72_004334"
     CDS             <1..465
                     /locus_tag="OQQ72_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014837283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013819.1"
                     /translation="LPISAADKRRFYYYFQEKNTPNIERFFVFDSSEYRYALNMREVV
                     FHQFLSDGLRPIVDEDDDAYEDDYFNVHITLVNGGPVIPLSVEPDAPQNEETDDIGQL
                     NAFFDALDCEPETTDRFMITDEDGEDAFIRIGSIAMVRVALDVLEPVEDDDE"
BASE COUNT          258 a          208 c          254 g          311 t
ORIGIN      
        1 ttgcccattt cagcagcgga taagcggagg ttttattatt attttcagga aaaaaacacc
       61 ccaaacatag aacgcttctt cgtttttgat tcttccgagt atcgttatgc gttaaatatg
      121 cgtgaagtgg tatttcatca gttcctttct gatggtctgc ggccaatcgt tgacgaagac
      181 gatgatgcct acgaagacga ttattttaat gtccatatca cgctggtaaa cggcggacca
      241 gtgattccac tgagtgttga gccagatgcg ccgcaaaacg aagagacgga tgatatcggc
      301 cagttgaatg cattttttga cgcgctggat tgcgagcctg aaaccacgga tcgttttatg
      361 ataaccgacg aagatggaga agatgctttc attcgtattg gttctatcgc tatggtgcga
      421 gttgcgcttg atgtgctgga accagtggaa gacgatgatg agtagtattg aatggattga
      481 tttcatattg ttgagtctgg aatcgcggtg cggccttcgc accacaccgt atgcaaatcg
      541 agtcgctcaa gagcggcttt ttttgtgtct gaaatcaccc atatccgtgc agtatatagg
      601 cctgccagaa aagcagttca gtattcttca ttttgtagtc gatggtccca agtttgctct
      661 ggctggaagc tgcatcgtcc acattacgtg ggcagggtgg tttcgctatg ctacttgaac
      721 gttttgacca tgtggctcag gtagctaata ccaaaagacg tcattttgtc tccacgccca
      781 ccttggtgaa cattcaataa atagtttcgg tcgagagcag ttatgtaggg ctagcagacg
      841 agatgcgcag acatcttgtt gaagacaatt ttactgacca cctgagaacg ctattctacc
      901 gaataatatt tattatcttg gcgaataatg atgattacct gtgtaactat ggttttatgc
      961 tgatgggacc ggcagtacaa tttctgtagt gtactcgcaa tttcaggtct ctggcgttta
     1021 ttctggtgca a
//
LOCUS       DAJVUY010000348         1023 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.356, whole genome shotgun sequence.
ACCESSION   DAJVUY010000348 DAJVUY010000000
VERSION     DAJVUY010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.356"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(165..788)
                     /locus_tag="OQQ72_004335"
     CDS             complement(165..788)
                     /locus_tag="OQQ72_004335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS2013820.1"
                     /translation="MHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFD
                     DRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW
                     RAEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSM
                     PELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE"
     gene            complement(739..>1023)
                     /locus_tag="OQQ72_004336"
     CDS             complement(739..>1023)
                     /locus_tag="OQQ72_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013821.1"
                     /translation="GDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVP
                     STPTGTYIASPQFFITGCSEHSLPGSYCALSGGPDAHVSGAMPGLFIRTS"
BASE COUNT          211 a          318 c          247 g          247 t
ORIGIN      
        1 cacagaccgg actgactccg gaaaaacaga ggcccgcccc cgggcctccc cggattcatc
       61 cgtttccctg ttcagcctga cagcacgccc ccgcggccgg atgacagact ccgcttcggt
      121 aagcaaagcg gtcttctgtg attccgccag ttgcggctta ttcattactc aacgtcaaac
      181 gcccgaattg aagccaaatc atccagaccg ctcagctcct ctttcatttc acgctgacgg
      241 cgataaatct catcgttgcg atcgacctgc gcctgcacca ttgctgccgc cagttcttcc
      301 agttccggca tcgacagttt cacctgctga ttatcggcat cgctccacgc catatgtgtt
      361 tgtgctgtga cagattttgc cagcatgact accggggaca ggcggcccag tgagtcggga
      421 ccagcattcc agatacgacc gttccattca aacgtgaacg gcttcgcctc ctgttctgcg
      481 cgccatgctt caatttcctg acgtctggcc tctctggccg cttccagcat ttctggtgtc
      541 acagtgaatg gggctatctc accccatttg ccgctttgca gttcctgcca gatttgctga
      601 cccgtcggag cgacatcatc agcggtggct gtgtagggga ctgcctggtc cctgtcgtca
      661 aaaaaaacgt cacagtctac tgcgccactt tcggtataac ggggattaat gattttttta
      721 atttccacgg tgcattcctc acgatgtgcg aataaaaagc ccgggcattg cgccagagac
      781 atgtgcatcc ggccccccgg acagggcgca atatgacccc ggtaatgaat gctctgaaca
      841 tcccgtaatg aaaaattgtg gggatgctat atacgttccg gtgggagtac tgggcactga
      901 aatccccacc ggtcccagtc gtgagcctct gtatgactgc cccctgacaa gtctgatgac
      961 tttatcaccg tcagcttctc cctggtacgc agcaataatc agcccgccaa tgtcagggtc
     1021 tcc
//
LOCUS       DAJVUY010000349         1009 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.357, whole genome shotgun sequence.
ACCESSION   DAJVUY010000349 DAJVUY010000000
VERSION     DAJVUY010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.357"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="OQQ72_004337"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="OQQ72_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HCS2013822.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..944
                     /gene="bfr"
                     /locus_tag="OQQ72_004338"
     CDS             468..944
                     /gene="bfr"
                     /locus_tag="OQQ72_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HCS2013823.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGTPNLQDLGKLGIGEDVEEMLQSDLRLEQEGAKDLR
                     EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD"
     gene            complement(941..>1009)
                     /locus_tag="OQQ72_004339"
     CDS             complement(941..>1009)
                     /locus_tag="OQQ72_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS2013824.1"
                     /translation="PFGPFLAAAGFVIGWDSLLIGR"
BASE COUNT          302 a          205 c          231 g          271 t
ORIGIN      
        1 gctaaagttc tgggttaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataatcat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaac ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac aggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccgcga tatgatgatc gagatccttg
      841 ctgatgaaga aggtcatatc gactggctcg aaactgaact ggatctcatc ggtaaaattg
      901 gcctacaaaa ttacctgcaa tcacaaatta aagttaaaga ttaacggcct atcagcaaac
      961 tatcccagcc tataacgaaa cccgcagccg ccagaaatgg cccaaaagg
//
LOCUS       DAJVUY010000350          999 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.358, whole genome shotgun sequence.
ACCESSION   DAJVUY010000350 DAJVUY010000000
VERSION     DAJVUY010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.358"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..116
                     /locus_tag="OQQ72_004340"
     CDS             <1..116
                     /locus_tag="OQQ72_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2013825.1"
                     /translation="VSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR"
     gene            113..463
                     /gene="tnpB"
                     /locus_tag="OQQ72_004341"
     CDS             113..463
                     /gene="tnpB"
                     /locus_tag="OQQ72_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2013826.1"
                     /translation="MISLPSGTRIWLVAGITDMRKSFNGLGEQVQHVLNDNPFSGHLF
                     IFRGRRGDMIKILWADADGLCLFTRRLEEGQFIWPAVRDGKVSITRSQLAMLLDKLDW
                     RQPKTSRLNALTML"
     gene            494..>999
                     /locus_tag="OQQ72_004342"
     CDS             494..>999
                     /locus_tag="OQQ72_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS2013827.1"
                     /translation="MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKI
                     EEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQ
                     VPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
                     VIRTERVK"
BASE COUNT          254 a          255 c          284 g          206 t
ORIGIN      
        1 cagttagtgc cagctcctgc aaggtggagt tccgtcacgg taacatgacg ctggaaaatc
       61 cttcaccaga gctgctcaca gtgttgatcc gtgaactgac cgggagggga cgatgatctc
      121 actcccgtca ggcacccgca tctggctcgt tgctgggata accgatatgc gtaagtcttt
      181 caacgggctg ggtgaacagg tacagcatgt gctgaatgat aatcccttct ccggtcacct
      241 gttcatcttc cgtggccgac ggggtgacat gattaaaatc ctgtgggctg atgctgatgg
      301 tctgtgcctg ttcaccagac gcctggagga aggccagttt atctggcctg ctgtgcgtga
      361 cggcaaggta tccattaccc gctcgcaact ggcaatgctc ctcgataagc tggactggcg
      421 tcagccaaaa acatcccgcc ttaatgcact gacaatgttg taaaaatgtc atggccggat
      481 tataaaaacg gccatgaatc aaaaatacct cattcgcatt gcagaactgg aatgccagct
      541 ccgtcagaaa gaccagcaac tgagtctggt tgaagagacg gaggccttcc tgcgctctgc
      601 actggcccgc gccgaagaaa agatcgaaga agatgaacgg gaaatagaac atctgcgggc
      661 tcagatagaa aaactgcgcc ggatgctgtt cggtacccgt tctgaaaaac tgcgtcgtga
      721 agttgaacag gctgaggccc tgctgaaaca acgcgaacag gacagtgatc gttacagtgg
      781 gcgggaagac gatccgcagg ttccccgcca gttgcgacag tctcgtcatc gtcgcccgtt
      841 accggagcat ctgccccgcg aaataaatcg cctggagcca gaagaaagct gttgcccgga
      901 gtgtggcggt gagctggatt atctggggga agtcagcgca gaacaactgg aactggtgag
      961 cagcgctctg aaagtgatcc gcacagaacg ggtaaaaaa
//
LOCUS       DAJVUY010000351          995 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.359, whole genome shotgun sequence.
ACCESSION   DAJVUY010000351 DAJVUY010000000
VERSION     DAJVUY010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.359"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..762)
                     /locus_tag="OQQ72_004343"
     CDS             complement(<1..762)
                     /locus_tag="OQQ72_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS2013828.1"
                     /translation="MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEE
                     QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT
                     QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPEL
                     LETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLP
                     ENLRNGYFDINQISHIPESILNLRNECSIDISDNPL"
BASE COUNT          280 a          143 c          234 g          338 t
ORIGIN      
        1 caatgggtta tcactaatat ctattgaaca ttcattcctc agattaagaa tgctttccgg
       61 gatatgactt atctgattta tgtcaaaata accgttcctt aaattttccg gcaggtatgg
      121 aatatcggtt aacatattgt cgattgccca tatggagtga atgttgtgag gtagaggggg
      181 gagttcacta agaagattcc ctattgcgct aatctcttgt aaagaaaatg gtaaaggtgg
      241 taaaactgcc agcccattac atgatacatc taatgtttcc agtagttctg gtaaaacagg
      301 aagagaacat aattgattat ttgagacatg aagctccttc aaagatatgg ggagtgtggg
      361 tagtgtgatt agttgattgt gggacgcatt caataattta agtccttgag gcaaagcagg
      421 cagttcaata agtctgttat agctgacatt aagctgtgta agggacgcag gcaatgggga
      481 gattaagctt aaattatttt tacttatatt aattgattta attcccgggg ggatttcagg
      541 taatgttgtc aggcctaatt cagacaagtc taggttcgtc tcttggtttt gtagacatga
      601 tactagtcgc tgaaaagcga tgtctcgttg ttcttcttgt atgcggttat ttttccattc
      661 agtccaatgg gttagataat tttcatatgc gcggctagtg tcgattgaat aagtggagaa
      721 cgaatttgaa attaatctgt gattgttatt tgtcgggagc ataaatatca gggcgtattc
      781 tttatgttga gaggtgttgg attctttttt atctgctttg caatgttatt ggttcccttc
      841 agcagtagac aggaacttct ggaggaggcg gatatatagt ttgtgtaagc atattaactc
      901 catatgttat atattgaaga acttctgctt tacactatcc taaactggat cggtttaatg
      961 taaaaaaacg atactttttg ggggaggggg caatt
//
LOCUS       DAJVUY010000352          993 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.360, whole genome shotgun sequence.
ACCESSION   DAJVUY010000352 DAJVUY010000000
VERSION     DAJVUY010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.360"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ72_004344"
     CDS             complement(<1..209)
                     /gene="tuf"
                     /locus_tag="OQQ72_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS2013829.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVE"
     gene            complement(324..399)
                     /locus_tag="OQQ72_004345"
     tRNA            complement(324..399)
                     /locus_tag="OQQ72_004345"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(364..366),aa:Thr,seq:ggt)
     gene            complement(406..480)
                     /locus_tag="OQQ72_004346"
     tRNA            complement(406..480)
                     /locus_tag="OQQ72_004346"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(445..447),aa:Gly,seq:tcc)
     gene            complement(597..681)
                     /locus_tag="OQQ72_004347"
     tRNA            complement(597..681)
                     /locus_tag="OQQ72_004347"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(645..647),aa:Tyr,seq:gta)
     gene            complement(690..765)
                     /locus_tag="OQQ72_004348"
     tRNA            complement(690..765)
                     /locus_tag="OQQ72_004348"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(730..732),aa:Thr,seq:tgt)
BASE COUNT          258 a          236 c          242 g          257 t
ORIGIN      
        1 tattcaacgt gagaagtgtt gatggtgata ccacgagctt tttcttccgg cgcgttatcg
       61 atctggtcga atgcgcgagc agcaccgccg taggttttag ccagtacggt agtgattgca
      121 gcggtcagcg ttgttttacc atggtcaacg tggccgatag taccgacgtt aacgtgcggt
      181 tttgtacgtt caaacttttc tttagacatc gattgtccct ctaagacacg gataaatcgg
      241 tgatatcacc acatcaacca ggcaacatgc ccgacttgtt gaatgcaata aacagaagga
      301 aaaaacaggg aggagaaaag aagtggtgct gataggcaga ttcgaactgc cgacctcacc
      361 cttaccaagg gtgcgctcta ccaactgagc tatatcagca catcttggag cgggcagcgg
      421 gaatcgaacc cgcatcatca gcttggaagg ctgaggtaat agccattata cgatgcccgc
      481 atcctggaac tcggctacct gattttcatt ctgcactgaa tatcgagaga agctctcttt
      541 attcgagccg gtaagcgaac ttatcgtctc gggctacgcc atcgcgtggc cgaaattggt
      601 ggtgggggaa ggattcgaac cttcgaagtc tgtgacggca gatttacagt ctgctccctt
      661 tggccgctcg ggaaccccac cggacttgat ggtgccgact accggaatcg aactggtgac
      721 ctactgatta caagtcagtt gctctaccta ctgagctaag tcggcatcaa gtagcgcgca
      781 ttctatggag acatgcgagt tcatgcaact aaaaaattgc ataatttgtt ttattggtca
      841 cattttatgc gacacgatga agaaacagcc gaatggaggg cagattagca cactttttca
      901 acatcattgt gctcaacaat gcgctcctgc taaaccataa ttcttcttat cagatggaat
      961 atctgtcaca ttgcttttca acgatagctt cct
//
LOCUS       DAJVUY010000353          991 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.361, whole genome shotgun sequence.
ACCESSION   DAJVUY010000353 DAJVUY010000000
VERSION     DAJVUY010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.361"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            302..378
                     /locus_tag="OQQ72_004349"
     tRNA            302..378
                     /locus_tag="OQQ72_004349"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:336..338,aa:Arg,seq:tct)
     gene            complement(424..>991)
                     /gene="envY"
                     /locus_tag="OQQ72_004350"
     CDS             complement(424..>991)
                     /gene="envY"
                     /locus_tag="OQQ72_004350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator EnvY"
                     /protein_id="HCS2013830.1"
                     /translation="YLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQP
                     SKPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRI
                     VASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSST
                     SYFISVFKAFYGLTPLNYLAKQRQKVMW"
BASE COUNT          259 a          227 c          236 g          269 t
ORIGIN      
        1 aaaaaaagaa caaatggtag tgtccgctat tgccagtaca cctcagacgt tggtttcata
       61 gttaccagtc tcataggagc ggacaatttt ccgttagggc ggtaaattgt actttgatac
      121 atgaaaatac gggttttctt gattcagacg cgcagcggtg tgcgtttgtt tgccgctata
      181 gcgaaataaa tcagaaaatc agacgcggtc gttcacttgt tcagcaacca gatcaaaagc
      241 cattgactca gcaagggttg accgtataat tcacgcgatt acaccgcatt gcggtatcaa
      301 cgcgccctta gctcagttgg atagagcaac gaccttctaa gtcgtgggcc gcaggttcga
      361 atcctgcagg gcgcgccatt tcttcttcat ttatgcccgt cttatccgtt tccgctttgc
      421 ccttcaccac atcacttttt gtcgctgttt ggcgagataa ttcaacggtg tcaggccgta
      481 aaacgcctta aaaacagaga taaagtacga cgtgctgcta tagccacata attgcgccac
      541 ctgagtgata tttttgttat ccatcaataa catctgtacg gcgtaacgca tacgacactc
      601 tgtgacaatc tggctatagc tggtattttc gttttttaat ttctttttga gcaggctggg
      661 gcttaaacat agcgaactgg cgacaattcg cagattccag taatgctgaa tatcgctttg
      721 aataatgcgg cagacgctgt cgcggacgct gctgcgtaag atatacatca gtagggcaat
      781 aaaccgcgat tgctcaagaa agttagacaa tacggtaaaa agtaatgcgc gcgtcaactc
      841 cgcttcgcag ggtttgctgg gttgctgctt gctgtggttg gcggctagcc ggaacacttc
      901 cggtgtacgg ctatgacaag cgataaccgg ggttgccagc cgcgaccagg gctttacaca
      961 ggttaagttc ttatttaaaa acaacagata a
//
LOCUS       DAJVUY010000354          984 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.362, whole genome shotgun sequence.
ACCESSION   DAJVUY010000354 DAJVUY010000000
VERSION     DAJVUY010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.362"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..190
                     /locus_tag="OQQ72_004351"
     CDS             <1..190
                     /locus_tag="OQQ72_004351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS2013831.1"
                     /translation="QYPSKALLLIAKQNTECIIGSAFCLIIHNNDVRFAVNLDALSRS
                     GVKVNPDVLMLARKKNDG"
     gene            180..>984
                     /gene="dgcN"
                     /locus_tag="OQQ72_004352"
     CDS             180..>984
                     /gene="dgcN"
                     /locus_tag="OQQ72_004352"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HCS2013832.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGIN"
BASE COUNT          260 a          259 c          219 g          246 t
ORIGIN      
        1 acaatatccg tcaaaggcgt tattattaat tgccaaacaa aataccgagt gcattattgg
       61 tagcgccttt tgtctgatca tccacaataa tgacgtcaga tttgccgtaa acctggatgc
      121 cttatcgcgt agcggtgtaa aggtcaaccc ggatgtctta atgctcgcac ggaagaaaaa
      181 tgatggataa cgataattct cttaataagc gccccacgtt taaaagagca ttacgcaaca
      241 tcagtatgac cagcatattt atcactatga tgctgatctg gttgctgctt tccgtgacct
      301 cggtgctgac cctgaaacag tacgcgcaaa aaaacctggc actgacagca gcaacaatga
      361 cttacagtct ggaagcagct gtcgtttttg ccgatggccc tgcagcaact gaaacactgg
      421 cagcgctggg ccagcaaggg caattttcaa ctgcagaagt acgtgataag cagcaaaata
      481 ttctggcgtc ctggcattac acccgtaagg atccaggcga tactttcagc aatttcataa
      541 gccactggct cttccccgcc cccatcattc agccgattcg tcacaatggt gaaaccattg
      601 gcgaagtacg cttaaccgct cgcgacagtt caatcagcca ttttatctgg ttttcgctcg
      661 ccgtactgac cggttgtatt ctgctggcat caggcatcgc aattaccctc acccgccatt
      721 tgcacaatgg cctagtggaa gcgctgaaaa atatcaccga tgtcgtacat gatgtgcgtt
      781 ccaaccgcaa tttttcccga cgagtttctg aagaacgtat cgctgagttt caccgcttcg
      841 ctctcgactt caacagtctg ctggatgaaa tggaagagtg gcagcttcgt ttacaggcca
      901 aaaatgcgca gcttctgcgt accgcgctac atgacccatt aaccgggctg gctaaccgcg
      961 cagcgtttcg tagcggcatc aata
//
LOCUS       DAJVUY010000355          979 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.363, whole genome shotgun sequence.
ACCESSION   DAJVUY010000355 DAJVUY010000000
VERSION     DAJVUY010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.363"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..659
                     /gene="pocR"
                     /locus_tag="OQQ72_004353"
     CDS             <1..659
                     /gene="pocR"
                     /locus_tag="OQQ72_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="regulatory protein PocR"
                     /protein_id="HCS2013833.1"
                     /translation="TDFSIPLVIAGHLVGFVLCGQVRLRNDYVDLVDILNVDDCWQAD
                     PELLNEFRKVPEMDYSRVMASADLLKLIVENCLKKQLNFVVIKENKSQSDSVRQTRAP
                     SPHDNKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYHGIGFNAWVNQQR
                     MASARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQVYRQQVSENAAMETV
                     "
     regulatory      748..923
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          278 a          192 c          246 g          263 t
ORIGIN      
        1 taaccgattt ctctattcca ctggtaatcg ccgggcattt agtcggtttt gtattgtgcg
       61 ggcaagttcg tctgcgtaat gattatgtcg atttggtcga tattctgaat gtcgatgatt
      121 gctggcaggc agatcccgaa ttacttaatg aatttcgcaa agttcctgag atggattact
      181 caagagttat ggcctctgct gatttgttga agttgattgt agaaaattgc ctcaaaaaac
      241 aactcaattt tgtggttatt aaagagaaca aatctcagtc agattcggtg cgccagactc
      301 gtgcgcctag tccccacgac aataaaatga aaaaagcttt acgctatatt gatgcgcatt
      361 tatcagacga tttgcgtctg gaagatgtcg cctcgcacgt ttatctaagc ccttattatt
      421 tcagtaagtt attcaagaaa taccatggaa tcgggtttaa tgcgtgggta aaccaacaac
      481 ggatggccag cgcgcgtgag ttactgtgcc atagtgactg gagcatcgcc agcattgcgc
      541 gtaatttagg tttttcgcaa accagttatt tttgcaaagt tttccgtcag acttatcagg
      601 ttacgccgca ggtgtatcga cagcaagtga gtgaaaatgc ggcgatggaa acggtataga
      661 gtaaatgcta aaaaaaggga aggtttaaat aaacgctgga atgaataatt aacgttattt
      721 acgtgttatg ggaaaagtaa aatcagctca taacatacgc tgacaggtgt ggcacatttg
      781 tgcctgggaa gagagtgaaa atccctcgca gcccccgctg ctgtaatgct gacaaacccg
      841 aaaatgccac tgatcgcgag attgggaagg tcgggagagg atgacgctaa gccagaagac
      901 cagccagtca gtcaatacca acaacttcgg tgggaagtgg gttgcccgga agcgtccggt
      961 agagtacagg cgcgtcttt
//
LOCUS       DAJVUY010000356          920 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.364, whole genome shotgun sequence.
ACCESSION   DAJVUY010000356 DAJVUY010000000
VERSION     DAJVUY010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.364"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ72_004354"
     CDS             <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ72_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS2013834.1"
                     /translation="KTDVPIFNTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPV
                     SLDRIINFVFQLEYHIPRMLSTDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAH
                     QALAYSLGNKKADIALYLLSKFNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYK
                     VLEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          326 a          142 c          179 g          273 t
ORIGIN      
        1 aaaactgatg ttccaatatt taacactaaa gatatgaggc ttggaattgg gttgcatctt
       61 attgatttta taagaaagag taaagatcaa ggattcagag agttttgtta taacaaaaat
      121 attgatcctg ttagtctgga tagaattata aactttgtgt ttcagcttga gtatcatata
      181 ccaagaatgc taagtacaga taacttcaaa aaaataaaac tcagagacat atctttggag
      241 gatgcgatta aagcatctaa ttatgaagag attaacaata aagtgactga taaaaaaatg
      301 gctcatcagg cccttgctta ttctttaggc aataaaaaag ctgatatagc actttattta
      361 ctatctaaat ttaattttac aaaacaagat gtcgcagaga tggagaaaat gaacaacaat
      421 agatattgta atctgtatga tgttgaatac ttacttagta aagatggtgc caactataaa
      481 gtgctagaat attttatcaa taatggattg gttgatgtaa acaaaaaatt tcaaaaagca
      541 aatagtgggg acactatgct tgacaatgca atgaaaagca aaaatccaaa aatgattgat
      601 tttttattaa aaaatggagc aatattaggc aaacgatttg agatatgacc taaaagctcg
      661 gccaaataat aatgtcgtcg attatcgaag tcatcatgag tgattctgtc cccacagtgc
      721 agcatcagca tgacagtgaa ttgtctggcg tggtccattt aatgagatgg agatggtccc
      781 tctttcctaa atagctgtgc ctaataccgc tacacttttg ccagcccatg tttgcctccg
      841 gggaatgggc tgacggttcc ttcaaaatcc attgcacgca gttatgtcgg agcgggaact
      901 tgactcctgt ctttacggga
//
LOCUS       DAJVUY010000357          914 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.365, whole genome shotgun sequence.
ACCESSION   DAJVUY010000357 DAJVUY010000000
VERSION     DAJVUY010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.365"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>914
                     /gene="tuf"
                     /locus_tag="OQQ72_004355"
     CDS             <1..>914
                     /gene="tuf"
                     /locus_tag="OQQ72_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS2013835.1"
                     /translation="AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL
                     LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL
                     EGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII
                     KVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK
                     PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMP
                     GDNIKMVVTLIHPIAMDDGLRFAIREGGR"
BASE COUNT          212 a          230 c          264 g          208 t
ORIGIN      
        1 gcacacgtag actgcccggg gcacgccgac tatgttaaaa acatgatcac cggtgctgct
       61 cagatggacg gcgcgatcct ggtagttgct gcgactgacg gcccgatgcc gcagactcgt
      121 gagcacatcc tgctgggtcg tcaggtaggc gttccgtaca tcatcgtgtt cctgaacaaa
      181 tgcgacatgg ttgatgacga agagctgctg gaactggttg aaatggaagt tcgtgaactt
      241 ctgtctcagt acgacttccc gggcgacgac actccgatcg ttcgtggttc tgctctgaaa
      301 gcgctggaag gcgacgcaga gtgggaagcg aaaatcctgg aactggctgg cttcctggat
      361 tcttacattc cggaaccaga gcgtgcgatt gacaagccgt tcctgctgcc gatcgaagac
      421 gtattctcca tctccggtcg tggtaccgtt gttaccggtc gtgtagaacg cggtatcatc
      481 aaagttggtg aagaagttga aatcgttggt atcaaagaga ctcagaagtc tacctgtact
      541 ggcgttgaaa tgttccgcaa actgctggac gaaggccgtg ctggtgagaa cgtaggtgtt
      601 ctgctgcgtg gtatcaaacg tgaagaaatc gaacgtggtc aggtactggc taagccgggc
      661 accatcaagc cgcacaccaa gttcgaatct gaagtgtaca ttctgtccaa agatgaaggc
      721 ggccgtcata ctccgttctt caaaggctac cgtccgcagt tctacttccg tactactgac
      781 gtgactggta ccatcgaact gccggaaggc gtagagatgg taatgccggg cgacaacatc
      841 aaaatggttg ttaccctgat ccacccgatc gcgatggacg acggtctgcg tttcgcaatc
      901 cgtgaaggcg gccg
//
LOCUS       DAJVUY010000358          911 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.366, whole genome shotgun sequence.
ACCESSION   DAJVUY010000358 DAJVUY010000000
VERSION     DAJVUY010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.366"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..537
                     /locus_tag="OQQ72_004356"
     CDS             <1..537
                     /locus_tag="OQQ72_004356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS2013836.1"
                     /translation="AWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGL
                     VTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSR
                     VSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGS
                     GSGDWRTDGFIVGVGYKF"
     gene            601..>911
                     /locus_tag="OQQ72_004357"
     CDS             601..>911
                     /locus_tag="OQQ72_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS2013837.1"
                     /translation="MAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTD
                     NNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEV
                     M"
BASE COUNT          201 a          210 c          292 g          208 t
ORIGIN      
        1 gcatgggcgt ctgaacatca gtccacgctg agcgccgggt atcttcagcc ccatactgat
       61 atgccaggca gcgatgacct gaagggcatt aacgtgaaat accgttatga gtttacggac
      121 acgttggggc tggtgacgtc attcagctat gccaacgctg aagatgagca aaaaacgcat
      181 tacagcgata cccgctggca tgaggattcc gtgcgtaacc gctggttcag cgtgatggcg
      241 gggccgtctg tgcgcgtgaa tgaatggttc agcgcgtatg cgatggcggg cgtggcttac
      301 agccgtgtgt cgaccttctc cggggattat ctccgcgtaa ctgacaacaa ggggaaaacg
      361 cacgatgtgc tgaccgggag tgatgacaac cgccacagca acacgtctct ggcgtggggg
      421 gctggcgtgc agtttaaccc gaccgaatcc gtggccattg accttgctta tgaaggttcc
      481 ggcagtggcg actggcgcac tgacggtttc atcgtgggtg tcggttataa gttctgatta
      541 gccaggtaac acagtgttat gacagcccgc tggttcaggc gggctttttg tggggtgaat
      601 atggcagtaa agatttcagg tgtactgaaa gatggggcgg gtaaacctgt cgtaaattgt
      661 gcgattgaac tgcgggccag aagaaccagt ccgaccgttg tggcacacgt tgttgccact
      721 tgcgtgacgg acaataacgg tgcttatgtg attgaggctg agccggggta ttacgaggtt
      781 gcgcttcact gtaacggctg gcagccaacc cgtgtcgggg atattgatgt ggcaccgact
      841 gatgcaccgg ggacactgaa cgcgtttctg aatgcaccaa aggatggtga tttacgtccg
      901 gaggtgatga a
//
LOCUS       DAJVUY010000359          909 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.367, whole genome shotgun sequence.
ACCESSION   DAJVUY010000359 DAJVUY010000000
VERSION     DAJVUY010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.367"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>909)
                     /locus_tag="OQQ72_004358"
     CDS             complement(<1..>909)
                     /locus_tag="OQQ72_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS2013838.1"
                     /translation="AFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILV
                     SQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNLNYFILLSTGVLLSSFASTANPQ
                     MFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAF
                     VVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINM
                     PLFIIDELHLTDKLAGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYA
                     SVLMATTPAVELELQILNAIFLGILCG"
BASE COUNT          281 a          213 c          213 g          202 t
ORIGIN      
        1 ccacagagaa taccaaggaa gatggcattt agaatttgca attccagctc aaccgccgga
       61 gtcgtcgcca tgagtacgct ggcgtaaaaa cacataccac tcacgatagc aatgagcatt
      121 aatagtcgct tgccaatacg tttcatgtaa tagcctgcga ttaacatcat cggaatttcc
      181 agaccggcag cgataccaat catttctcca gccagtttat cggttagatg cagttcatca
      241 ataataaata gcggcatatt tatcatgtag agattattcg ccgcccacat cattgaacag
      301 accacaaaaa gtagccgcgt atcccgcttc ctatgggtgg agggtaaaat ttctacgggt
      361 tgggtaacga caggaatatt tctttgtatt gatggcaaaa acaaccagac tatcagcccg
      421 caaacaacaa atgcgatggc agcggtgaga tacatcactt taaaactaaa ccccattgcc
      481 agttcataag cgagcggtgg cccgataacc caggcaagcg agatctgagc acgtaaaaat
      541 gtactgaaca tgaccgtctc acggcctgtt ctgtcggcgt gttcacgggc gagggcgaac
      601 atttgcgggt ttgcggtaga agcaaaacta ctcagaagta cgcccgtaga gaggagaatg
      661 aagtagttga gattccacgc aaaaagcgtg caggccagca ctccaaataa gcaacatagc
      721 agaatcagta atttacggtc gccttgttta tcggagtgcc ttgccagaaa ttgactgacc
      781 agaattccca taatagcgct accggtgaag aaaaaaccta ccattatagg acgggctttc
      841 agttcatctg cgaggaatat acttagggta ggagtctgaa gagcgcccgc aatacccgtc
      901 agaaaggcg
//
LOCUS       DAJVUY010000360          905 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.368, whole genome shotgun sequence.
ACCESSION   DAJVUY010000360 DAJVUY010000000
VERSION     DAJVUY010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.368"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..613
                     /locus_tag="OQQ72_004359"
                     /pseudo
     CDS             1..613
                     /locus_tag="OQQ72_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416251.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            664..>905
                     /gene="chbA"
                     /locus_tag="OQQ72_004360"
     CDS             664..>905
                     /gene="chbA"
                     /locus_tag="OQQ72_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HCS2013839.1"
                     /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ
                     GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGK"
BASE COUNT          220 a          222 c          249 g          214 t
ORIGIN      
        1 ttcatggcgc gctggcgctg accgcactgg acaacggcat tatgacgctg tgggcgctgg
       61 aaaatatcgc gacctatcag caatatggtt ccgtcgaagc ggcgctggca gccggtaaga
      121 ccttccatat ctgggccaag ccgatgctgg actcctttat tttccttggg gcagtggtgc
      181 gactttaggc ctgatcctgg ctatctttat cgcctctcgc cgtgctgatt atcgtcaggt
      241 ggcaaaactg gcgctgccgt ccggcatctt ccagattaac gaaccgattc tgtttggtct
      301 gccaattatc atgaacccgg tgatgtttat cccgtttgta ctggtacaac cgattctggc
      361 ggcaatcacc ctcgcagcgt actacatggg cattattcct ccggtgacca atattgcacc
      421 gtggaccatg ccaaccggtc tgggagcctt ctttaacacc aacggtagcg tcgctgcatt
      481 gctggtcgca ctcttcaacc ttggtatcgc aacgttaatt tatctgccct ttgttgtggt
      541 ggctaacaaa gcgcaaaacg cgattgataa agaagagagc gaagaagata tcgctaacgc
      601 cctgaaattt taatcgatgc cggtacggtt aatcgtgccg gtaagaagag agaggaacga
      661 tgtatgatgg atctcgataa cattcccgat acgcaaacag aagctgaaga gctggaagaa
      721 gtggtgatgg ggcttatcat caactccgga caagcgcgca gcctggcgta tgcggcactg
      781 aaacaggcga agcagggcga ttttgccgca gcaaaagcca tgatggatca gtcacggatg
      841 gcattgaatg aagcgcatct ggtacagacg aaactgattg aaggcgatgc gggcgaaggt
      901 aagat
//
LOCUS       DAJVUY010000361          904 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.369, whole genome shotgun sequence.
ACCESSION   DAJVUY010000361 DAJVUY010000000
VERSION     DAJVUY010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.369"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..479
                     /locus_tag="OQQ72_004361"
                     /pseudo
     CDS             1..479
                     /locus_tag="OQQ72_004361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
     gene            598..885
                     /locus_tag="OQQ72_004362"
     CDS             598..885
                     /locus_tag="OQQ72_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HCS2013840.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
BASE COUNT          239 a          189 c          235 g          241 t
ORIGIN      
        1 tggaggttat ccgggaaatg atgataaagg tcgtgagctg caacagcagg ttgatccaac
       61 caaactgatg aatgatttct ttgccgcaat tgagtttatg caacgctatc cgcaagcgac
      121 aggcataagt gggtattacc ggattttgct atggcggtgg tgtatcgaac gcggcggctg
      181 tcgcgtatcc ggaactggcc tgcgcggtgc cgttttatgg tcgtcaggca cccactgccg
      241 atgtggcgaa gattgaagcg cctttactac tccacttcgc ggaactggac acccgaatca
      301 acgagggctg gcccgcttat gaggcggcgt tgaaagccaa taataaggtc tatgaggcgt
      361 atatctatcc gggggttaat cacggattcc ataatgattc cacgcctcgt tatgacaaat
      421 ctgccgccga tcttgcctgg caaaggacgc tgaaatggtt cgataaatat ctctcctgat
      481 gggtttatct cttacgggat tacgtcttaa acaagcatga aaaaatagcg tgcgcaaaag
      541 tcgttctttg cctaaaatat tgctatatat gataatatat agcgaatgag gtgaacgatg
      601 aataaccatt ttggtaaagg cttaatggcg ggattaaaag caacgcatgc cgacagtgcg
      661 gttaatgtga caaaattctg tgccgattat aaacgcggtt ttgtattagg ctactcacac
      721 cggatgtacg aaaagaccgg agatcgccag cttagcgcct gggaagcggg tattctgacg
      781 cgccgctatg gactggataa agagatggta atggatttct ttcgtgagaa taattcctgt
      841 tctacgttgc gcttttttat ggccggttat cgcctcgaaa attgatcaaa catacgtatt
      901 atct
//
LOCUS       DAJVUY010000362          902 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.370, whole genome shotgun sequence.
ACCESSION   DAJVUY010000362 DAJVUY010000000
VERSION     DAJVUY010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.370"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
BASE COUNT          285 a          159 c          166 g          292 t
ORIGIN      
        1 tacatcgcat cacgactttt attctcttca gaatagaata tgttactccc cgttttacag
       61 gctcaggatt tgaattacaa attatacttt taagtgaaca ataactaggg gtatttctta
      121 tttcctgaaa ccaggcttgg cccatttcgg gatgagtttg aaaaaactcc tgacgcatac
      181 gatagtgatg aaataaacga aacaaattac gtcaacaaac tcaggcgtct tgcctgacat
      241 gctcctgaca tcattgatat tcacgctcat ctggcatatg catttgcgct ctttatgctg
      301 caattctggc gaatgttcat ttacagcgtc atcaggatgc cgttatactc attgataaaa
      361 tactaacata taaccctgag aataatcagg ggacacgctg gttactgggg acggaattgt
      421 tacgtgctgg caagcatgac agggctctgt acgtattgac aggacatgtc aatgaatttc
      481 ccccctactg gtacgagctt gctcttttac attttatgaa tgaggcatat attaatgctg
      541 caacggcatt tcgatatgga tttttaacaa gcatatattg ttgaaatgct ttgttagaat
      601 ctttatccat tccctggggc tgtatagtat gatttttcag gtatttctga atacagccaa
      661 atattattgc aaaatattct ctaaattatt agttaaatat ccataagcat tattgcctgg
      721 gaactggaca tataattact cttctgtgct aaaggaacgt tctgaaatgt ttaagtatgc
      781 agagatgttg atggcggaag aagataataa agtatgtgaa cttattttta aacaacaaga
      841 taatttgatt ttaaaaataa atgatagatt tcccagaata attataaaga aataccgaac
      901 at
//
LOCUS       DAJVUY010000363          893 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.371, whole genome shotgun sequence.
ACCESSION   DAJVUY010000363 DAJVUY010000000
VERSION     DAJVUY010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.371"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>893
                     /locus_tag="OQQ72_004363"
     CDS             <1..>893
                     /locus_tag="OQQ72_004363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HCS2013841.1"
                     /translation="VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETA
                     RLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPV
                     SLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELG
                     QQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPE
                     LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQA
                     YPHLLVTTGLHDSQVQYWEPA"
BASE COUNT          214 a          196 c          238 g          245 t
ORIGIN      
        1 ggttgaagag cgtcagcgcg ggttaaccag tttgcgccaa attaaccgca agacccggga
       61 agtcattggt attgcctttg atgatccagc ctatgtgacc tggattgcct acaatccaga
      121 acctgaaacc gcgcgattgc gttatggtta ttcttccatg accacaccag acactttgtt
      181 tgaactggat atggataccg gtgagcgtcg tgtattaaaa caaacggaag ttcctggttt
      241 tgatgcggcg aattaccgca gtgaacacct gtggatagtc gcccgtgatg gcgtcgaagt
      301 tccggtttcg ttggtctacc atcgcaaaca ttttcgcaaa ggacacaacc cgttgctggt
      361 gtatggctat ggttcttacg gcgcaagtat tgatgccgat ttcagtttta gccgcttgag
      421 tttgttagat cgtggctttg tctacgccat tgtccatgtt cgcggcggtg gtgagctggg
      481 gcaacaatgg tacgaagacg gaaaatttct gaagaagaaa aatacgttta atgattatct
      541 tgatgcctgc gatgcattgt taaaactggg ctatggctct ccttcgcttt gttatgcgat
      601 gggcgggagt gcggggggca tgttgatggg cgttgcaatt aatcaacgcc cggaattatt
      661 ccacggcgtt atcgcccagg taccgtttgt tgatgttgta acaacgatgc ttgatgaatc
      721 aattcctctt accactggtg agtttgaaga gtggggtaac ccgcaggatc cgcaatatta
      781 cgagtacatg aaaagctaca gcccgtatga caacgtcacc gcacaggctt atccgcattt
      841 actggtaacg accggtttac acgattctca ggtgcaatat tgggaaccgg caa
//
LOCUS       DAJVUY010000364          886 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.372, whole genome shotgun sequence.
ACCESSION   DAJVUY010000364 DAJVUY010000000
VERSION     DAJVUY010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.372"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(91..621)
                     /gene="cybB"
                     /locus_tag="OQQ72_004364"
     CDS             complement(91..621)
                     /gene="cybB"
                     /locus_tag="OQQ72_004364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HCS2013842.1"
                     /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI
                     HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL
                     VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY
                     FWKDNTLLRMMPRKRS"
     gene            810..>886
                     /locus_tag="OQQ72_004365"
     CDS             810..>886
                     /locus_tag="OQQ72_004365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HCS2013843.1"
                     /translation="MSKVGINGFGRIGRLVLRRLLEVKS"
BASE COUNT          252 a          208 c          193 g          233 t
ORIGIN      
        1 ataaatataa taggcgcttc cgatgtagac ccgtattctt cgcctgtacc acgggtcggt
       61 tttagtacag gcgttttctt taaatatcct tcaggaacgt ttacgcggca tcatgcgtag
      121 aagtgtgttg tccttccaga aatagtggtg tgccagtgca gccgcagcgt gcaacccgat
      181 gacaaaatat cccagattcg ccagcgtttc atgccacgac tttaagctat caacccgttc
      241 gaaattggcc tctgaagcgt aaggcatcgt caaaccaaac gcaaaccacg ggttgccccg
      301 gttatacatc atcaccaaac caatcactgg cagcgcaata aacaggagat aaatcaccaa
      361 atgtcccaaa tgcgccagtc ccgtcatcat cggttttggc ttaggtataa tcggcggggt
      421 tgggtatttc agccttaaca aaagacgaac gaccatcagc acgagaattg agatgccgca
      481 ggaaacatga atcatgttga tgagtggccg atcgctacgt gggaagaaac cccgaaactc
      541 cattgcgcaa tacgctgcga taaccagcaa aaagaccagc cagtgaatgc tgatttgtaa
      601 ccttgagtat ttattttcca taacatttcc tgctttaaca taattttccg ttaacataac
      661 gggcttttct caaaatttca ttaaatattg ttcacctgtt ttcagtacgt tacgtttcac
      721 tgtaagaatg gagattgccc atcccacaat cctgggctaa gcctggaaag gatcaatttt
      781 catccgaacg ttcctgacag gagaaaacca tgagtaaggt tggtattaac ggttttggtc
      841 gtatcggtcg actggtgttg cgtcgattac ttgaagtcaa aagcaa
//
LOCUS       DAJVUY010000365          885 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.373, whole genome shotgun sequence.
ACCESSION   DAJVUY010000365 DAJVUY010000000
VERSION     DAJVUY010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.373"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            54..885
                     /locus_tag="OQQ72_004366"
                     /pseudo
     CDS             54..885
                     /locus_tag="OQQ72_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="programmed frameshift; internal stop; incomplete;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          225 a          223 c          237 g          200 t
ORIGIN      
        1 ataaggcgcg gacagcggta tcgtctggtt tttcaatttc ctatacgtga actatggctc
       61 gctacgacct tcccgatgag gcatggacca tcatcaagcc tctgttacct cctgaacccg
      121 ccacaccacg ggccggacgc ccatgggctg agcaccgtaa aatcatcaat ggcatgttct
      181 gggtgttatg ttccggtgca ccatggcgcg atttacccga acgatatggg gcatggaaaa
      241 ctgtttataa ccgctttaac cgatgatcaa agtcaggcgt gattaatatt attttcaaca
      301 ggttgctttc gctacttgat gcaaacggct ttattgactg gtctgccacc gcgctggatg
      361 gcagtaatat ccgggcgctg aaatgtgccg ccggtgctca aaaaaacatc ccgatatcga
      421 cggagataat ggcccgggtc gctctcgcgg cggttttggc accaaaatcc atctggcaac
      481 agacggaagt ggcctcccgt taaatatcgt gctaagcccc ggacaagctc atgaaagcca
      541 gttcgcgcaa cgacttctgg acgggattgg cgttcagcgt cagaacggca gcatgaaacg
      601 ccgtggacat gcggtactgg ctgataaagc gtattcaggg cgcgcattgc gcaacgagct
      661 gaaaaataac ggtataaagg cagtaatccc ccgaaagtca aatgagaaaa tggcatcgga
      721 tggacgtgca cagcttgatc gtgatgcgta ctgcaatcgt aatgtcgttg aacggtgctt
      781 tgggcggctg aaagaatatc gccgcatcgc cacgcgttac gacaaaacgg cgagaaatta
      841 cctggcgatg gtgaaactgg gctgcatccg actcttttat caacg
//
LOCUS       DAJVUY010000366          873 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.374, whole genome shotgun sequence.
ACCESSION   DAJVUY010000366 DAJVUY010000000
VERSION     DAJVUY010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.374"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(64..639)
                     /locus_tag="OQQ72_004367"
                     /pseudo
     CDS             complement(64..639)
                     /locus_tag="OQQ72_004367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            643..873
                     /locus_tag="OQQ72_004368"
                     /pseudo
     CDS             643..873
                     /locus_tag="OQQ72_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          201 a          242 c          203 g          227 t
ORIGIN      
        1 actggcggta taactgtcaa cgacggatga aaagtggctc ttccgcaacc tgggtggaga
       61 ttttcatgcc agtggactca ttaccctctg cctgagtagt tcaaatcctg ctcgaccata
      121 catctggcgt ttcagcatct tcttcaggcg atttacatga ccttcgacaa caccattact
      181 ccagcgacta ctgattgcct cacatatagc tgcagcatca gcttccatcc ccgccgccac
      241 gcgccgaaat tctgctgaac cgctttcgtg gactcgagtg aaccaactgc ttagctgtga
      301 tttattttgg gttttcagaa tacggtagaa ctcgagtgcc agttgctgcg ctattttcag
      361 ctcaggttct ttttcacaca tcagactaat aaatcgggaa gcataatttt cttcatccct
      421 ggttattctc cagggcatca accagcggct tacccgggac actgaaggaa gtctgacggc
      481 agtagtaacc ggtgggttcc agcctttacg ccatttggca accgcatccc tgacgatggt
      541 ttcactgcct gtaaatcccc gggccaccat ttcccgccat atccggctgg cgttataatt
      601 accactttct cgttgctctt ttaaccactc cctccatggt gtcagcgaaa aacgaaaccg
      661 ctgttgaaat ccctggaaag ctggttgcgg aaaagatgaa gaccctgtcg cgacactcag
      721 agttggcgaa ggcgttcgcg tacgcactta accagtggcc ggcactgacg tactatgcga
      781 acgatggctg ggtggaaatc gacaacaaca tcgctgaaaa tgccttgcgg gcggtcagtc
      841 tgggtcgtaa aaacttcctg ttcttcggct ctg
//
LOCUS       DAJVUY010000367          867 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.375, whole genome shotgun sequence.
ACCESSION   DAJVUY010000367 DAJVUY010000000
VERSION     DAJVUY010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.375"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            135..564
                     /locus_tag="OQQ72_004369"
                     /pseudo
     CDS             135..564
                     /locus_tag="OQQ72_004369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            739..867
                     /locus_tag="OQQ72_004370"
                     /pseudo
     CDS             739..867
                     /locus_tag="OQQ72_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          222 a          172 c          269 g          204 t
ORIGIN      
        1 attcctgccg gtatcaacgc cgacggcatg tattgccctg aatgcggtac ggttcactgg
       61 ccggatggcg ttattccgcc tttctgatgc ttccccgttt tgccgatatt tttcagcagg
      121 gaaaccgatg gcttaactgg ctggagaagc agccggtgca gatgagccgc ctggaacatt
      181 atgccggtca ggatgaaatt ggcctgcgtt acaacagcca ccggacaaaa cgagaagaaa
      241 accttgtgat gagtggcgac gagtttatgg aaaggttctc ctggcatgtg gcggataagg
      301 ggttccggat ggtgatacgg ggtcctgagt ccggtgaagc ggcgattact ggaagatgtg
      361 gtgtacgcca taacggagac agtgagaaaa acggcgaggc aaatcacaag gagagggatg
      421 tatcagcagt gactgaaggt tgacccgctg aagtgcgagc tgtgcggagg tcagatgcgg
      481 tttacggggc tgaagagggg ttaccgtctg gcagagcagg ttatgatgca tgagccgctg
      541 gctcgaatac ggtggtgcgg ctgagagtcg cagaggggaa gttgcgtcca tgttgagggg
      601 aacggagcaa aaaaccatca gagatacatt gaatcaatca atgtaagcaa tattaagtgt
      661 ctataccgat tacttgatga tcaggttgtg ttgaataaac gcgcattctt cggtgctttt
      721 ttaatctttt ggggatttaa attcctatcg atggacatga atgcaggcta tataagagca
      781 gcgcgcatcc acttacccaa tgcggttgag aaaatagcct tcgatcgctt tcatgtggcg
      841 aaacaaccgg gtgaggtggt ggataaa
//
LOCUS       DAJVUY010000368          839 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.376, whole genome shotgun sequence.
ACCESSION   DAJVUY010000368 DAJVUY010000000
VERSION     DAJVUY010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.376"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>839
                     /locus_tag="OQQ72_004371"
     CDS             <1..>839
                     /locus_tag="OQQ72_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS2013844.1"
                     /translation="VSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSF
                     NCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGI
                     FNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFEQ
                     ILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNL
                     SLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDL
                     DDL"
BASE COUNT          205 a          133 c          192 g          309 t
ORIGIN      
        1 cagtgtcagc agatatgccg cttgttggct gtgttttgac tttgtcactg ttggttttgc
       61 ttatatttat ggcagcaaaa ggactgcgtt atcaggcctt gatgactagt ctcaacggcg
      121 taagatttag ttttaattgc tctatgaaag ggttctggtg ggtaaccttt ttcttgccga
      181 ttttaatggc cattgggatg gggactgttt tctttatctc gacaaagatg ctacatgcca
      241 atagttcaag tagtgttatt atatctgtgg ttctgatggc aatagttggt attgtttcca
      301 ttggtatttt taatggtact ttatatagcc tggtaatgag ttttctctgg agcaatacca
      361 gtttcggtat acatcgtttc aaggtgaaat tagatactgc gtattgtata aaatatgcca
      421 tcctcgcatt tttagcttta ttaccttttc tcgctgttgc tggttatatt atcttcgaac
      481 aaatattaaa tgcgtatgat agttctgtgt atgcaaatga tgatattgag aatttacagc
      541 aatttatgga aatgcaacgt aaaatgataa tcgcgcagtt aatctattat tttgggattg
      601 ctgttagcac cagttattta acggtgtcgt tgcgaaatca ttttatgagt aacctgtcac
      661 tgaatgatgg gcgtattcgt tttcgctcaa ctttaacgta ccacggtatg ctttatcgca
      721 tgtgtgcgtt ggtagtgata tccgggatta cgggcggtct ggcttatcca ctgctgaaaa
      781 tatggatgat tgactggcag gcaaaaaata cgtatttgct gggcgatttg gatgacctt
//
LOCUS       DAJVUY010000369          815 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.377, whole genome shotgun sequence.
ACCESSION   DAJVUY010000369 DAJVUY010000000
VERSION     DAJVUY010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.377"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            115..>815
                     /locus_tag="OQQ72_004372"
     CDS             115..>815
                     /locus_tag="OQQ72_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013845.1"
                     /translation="MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGIS
                     TCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIGSNDTDHITIGIDNQEPIELPAN
                     YKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGAPSFIFDKISHKLRHTVTEF
                     DESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGD
                     SLTQYCSENARSASA"
BASE COUNT          312 a          145 c          135 g          223 t
ORIGIN      
        1 gtgcgctcat acactcaaat taaagatagg ttctaaataa atgagcgttt tttgatagtc
       61 tatttcatta ggtaatatat atttgtaaca aatcaatcaa aatggaataa aatcatgcta
      121 ccatctattt caatcaacaa taccagcgca acttacccag aatccattaa tgaaaataac
      181 aatgatgaag ttaatggatt agtacaagag ctcaaaaacc tttttaatgg taaggaagga
      241 ataagcacct gtattaaaca tctacttgag cttataaaaa acgccatacg agtaaacgac
      301 gatccttata gatttaatat taataattcc tcagttactt atattgatat tggctccaat
      361 gatacagacc atattactat tggtatcgac aaccaagaac caatagaatt acctgcgaac
      421 tataaagaca aagaactcgt ccgtactatc attaatgaca acatagttga gaagactcat
      481 gatatcaata acaaggaaat gatcttcagc gcattaaaag aaatatatga tggagctcct
      541 agttttatct tcgataagat atcacacaaa ctcagacata cggtaacgga atttgatgag
      601 agcgggaaaa gcgaaccaac ggacttattt acctggtacg gtaaagataa aaaaggcgac
      661 tctctcgcta ttgtaattaa aaataaaaac ggaaatgatt acttatccct cggttactac
      721 gatcaggacg actaccacat tcaaagagga attcgtatta atggtgatag tctcacccaa
      781 tattgtagtg aaaacgccag gagtgcttca gcgtg
//
LOCUS       DAJVUY010000370          764 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.378, whole genome shotgun sequence.
ACCESSION   DAJVUY010000370 DAJVUY010000000
VERSION     DAJVUY010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.378"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            1..>764
                     /gene="fdrA"
                     /locus_tag="OQQ72_004373"
     CDS             1..>764
                     /gene="fdrA"
                     /locus_tag="OQQ72_004373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HCS2013846.1"
                     /translation="MHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKAL
                     LDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGAGSSQSLT
                     QVRRWDSACQKLSDANLALISVAGEYAAELANQALERNLNVMMFSDNVTLEDEIQLKT
                     RAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIAQAGEG
                     ITHAIGLGERDLSREVGGISALTALEMLSADEKSEVL"
BASE COUNT          185 a          175 c          239 g          165 t
ORIGIN      
        1 atccacgcct ttattaaaaa agggtgtttt caggattcgg tcagtttaat gattatttca
       61 cgaaaactca gcgaatcaga aaatgttgat gatgtttccg taatgatggg tacgcccgcc
      121 aataaagcgt tattagatac cacaggtttc tggcatgacg attttaataa cgccacgccg
      181 aacgatattt gcgtggcaat tcgtagcgaa gcggcggatg cggggatcgc gcaggcgatt
      241 atgcagcagc ttgaagaggc gctaaaacaa ctggcgcagg gggcaggcag cagccagtcc
      301 ttgacgcagg tgcgtcgctg ggacagtgcc tgtcagaaat tatccgatgc caatctggcg
      361 ctgatttcag tggctggcga gtatgcggcg gagctggcga atcaggcgct ggagcgcaac
      421 ctcaacgtga tgatgttctc cgataacgtc acgctggaag atgaaatcca acttaaaacc
      481 cgcgcgcgag aaaaaggctt gctggtgatg gggccggact gcggtacgtc gatgattgcc
      541 ggcacgccgc tggcttttgc taacgtgatg ccggaaggca acattggcgt cattggcgct
      601 tccggtaccg ggattcagga actgtgttcg cagattgcgc aggcagggga gggaattact
      661 cacgcgattg gtcttggcga gcgcgacctc agccgtgaag taggcggcat cagtgcgctg
      721 acggcgctgg aaatgctcag tgcagacgag aaaagcgaag tgct
//
LOCUS       DAJVUY010000371          763 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.379, whole genome shotgun sequence.
ACCESSION   DAJVUY010000371 DAJVUY010000000
VERSION     DAJVUY010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.379"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..752)
                     /locus_tag="OQQ72_004374"
     CDS             complement(<1..752)
                     /locus_tag="OQQ72_004374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS2013847.1"
                     /translation="MLNVAIENQNGWNYSAPAPHKTGAGISTPKVTRAHNRAEAVFLC
                     VMHSHIQIMVRRAGQPQGWPGSRVTGSANPVRLTTHEISTSAGELINLSLEDVIMATT
                     LSHPDVTIENGRAVTTSISIAEFFGKQHHHVVQKIESFECSELFLTSNFSRVKFEHRG
                     NSYNAYQITKNGFVFLVMGFTGKKAATFKEAYIAEFDRMEAELRQNNTPPADKMIPGD
                     GRTLVVHFDKFGNVEFTETVPDGALVCTLETFR"
BASE COUNT          193 a          179 c          194 g          197 t
ORIGIN      
        1 cggaaagtct ccagggtaca gaccagtgcg ccatcaggaa cggtttcggt gaattcgaca
       61 ttgccgaatt tgtcgaagtg aacaaccaga gtgcgaccat cacccggaat catcttgtca
      121 gcaggtgggg tgttattctg gcgcagttcg gcctccatgc ggtcgaactc agcaatgtag
      181 gcttccttga atgtggcggc ttttttgccc gtgaagccca tcaccaggaa aacgaagccg
      241 tttttggtga tttggtaggc gttataagaa ttgccgcggt gttcgaattt aacccgcgaa
      301 aagttgctgg ttaaaaatag ttcagaacat tcgaaggatt ctattttttg aacaacatgg
      361 tgatgctgct tgccaaaaaa ctcagcaatc gaaatagaag tagtgacggc gcgaccattt
      421 tcgatggtta cgtcagggtg agaaagggta gtagccataa tgacatcctc aagtgataag
      481 ttaattaact caccagcaga ggtgctaatc tcatgggtgg tgagacgcac agggttagca
      541 ctaccggtca ctcgagaacc cggccagcct tgcggctgcc ccgcacgcct caccataatt
      601 tgaatgtggc tgtgcattac gcataaaaaa accgcttcag cgcggttatg cgctcgagta
      661 actttcgggg tgctaatccc ggcacccgtt ttatgaggtg caggtgcact ataattccac
      721 ccgttctggt tttcaatagc tacattcaac attttctctt tcc
//
LOCUS       DAJVUY010000372          761 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.380, whole genome shotgun sequence.
ACCESSION   DAJVUY010000372 DAJVUY010000000
VERSION     DAJVUY010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.380"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..346
                     /locus_tag="OQQ72_004375"
     CDS             <1..346
                     /locus_tag="OQQ72_004375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013848.1"
                     /translation="VMCLTKPAFSYYIAAYLKLFIENYYEADALVDTILNMLTPPVRN
                     GIPSTTWIAKNLDCFSRNKRVAISFTFQYLCNEYNDPNTEKALNIYWGQYLNESLLIK
                     NVQNSKNKCKSQ"
     gene            complement(407..586)
                     /locus_tag="OQQ72_004376"
     CDS             complement(407..586)
                     /locus_tag="OQQ72_004376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005006008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013849.1"
                     /translation="MVAVAAAVTDALLVFFRQLAPFVVLPALGIFIIHGTVRQAVGFI
                     VMPERDQALMSLTVI"
     gene            591..>761
                     /locus_tag="OQQ72_004377"
     CDS             591..>761
                     /locus_tag="OQQ72_004377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000977355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS domain-containing protein"
                     /protein_id="HCS2013850.1"
                     /translation="MMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYD
                     EWGNLLSEDNPHR"
BASE COUNT          234 a          162 c          181 g          184 t
ORIGIN      
        1 tgtcatgtgt ctcactaaac cagcattctc atattatatt gcagcctatt taaaactttt
       61 tattgaaaat tattacgaag ctgatgcttt agtggatact attttaaata tgctcactcc
      121 tcctgttagg aatggtatcc ccagcactac atggatagca aaaaatcttg attgctttag
      181 tcgtaataaa agggtggcta tttcttttac attccaatat ttatgtaatg aatataatga
      241 tccaaatact gaaaaggcgt taaatatata ttggggacag tatctgaatg aatcattgct
      301 tattaaaaat gtacagaact ctaaaaataa atgtaaatca cagtaagaca gaaccaagca
      361 gaaatcgtgg gcgtggttcg caccctgacg gagggtgtag cgtgtactag atcacagtga
      421 gcgacatcaa agcttggtca cgttctggca ttacgatgaa gccgaccgcc tgacgcaccg
      481 taccgtgaat gatgaagatg ccgagtgctg gcagtacaac gaacggggct agctgacgga
      541 aaaagacgag cagcgcatcc gtgacggcgg cagccacagc caccattatc atgatgaaaa
      601 accagatgga gccggaatac acgccgctgc gtaaaattca cctgtaccac tgcgaccacc
      661 ggggactgcc gctggcgctg atacgcagtg acggccgaac cggatggcgt gtagagtatg
      721 acgaatgggg caacctgctg agtgaggata acccgcacag g
//
LOCUS       DAJVUY010000373          739 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.381, whole genome shotgun sequence.
ACCESSION   DAJVUY010000373 DAJVUY010000000
VERSION     DAJVUY010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.381"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>739
                     /locus_tag="OQQ72_004378"
     CDS             <1..>739
                     /locus_tag="OQQ72_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HCS2013851.1"
                     /translation="SHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPITMLMHGN
                     VIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAPAEYGKFS
                     FGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLEEKKFPVG
                     ESESKFNQVNIINQGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLTKGNQQLG
                     SGEWSLIAESIDPSAVRQFIIQYNIAMQ"
BASE COUNT          224 a          143 c          165 g          207 t
ORIGIN      
        1 ttcccatttt caaatgcaaa tttcatttga taacggtgca cccgatctca atatcaagcc
       61 aggccagaaa gttgcatttg atgtggatgt tgagcacggt ccgttgccca tcacaatgtt
      121 aatgcatggt aatgtcatcc cagcactggc agcggcaaaa gtgaacttag tgaataatga
      181 actgacacaa ccgctattta tcgccgcgaa aaataaatcg cccgtggaag cgacattgcg
      241 attcgcgttt ggtggctcat tctctacgac attagatgtt gcccctgcag agtatggaaa
      301 gttttctttt ggtgagggcc agtttacttt taatggtgat ggtagttcat tgtctaacct
      361 ggatattgaa ggcaaagtcg aagatattgt tctgcaatta tcaccaatga acaaagtaac
      421 ggcaaaaagt tttaccattg attctctgac acgattagaa gaaaagaaat ttccggttgg
      481 tgaaagcgag tcgaaattta atcaggttaa tattatcaat cagggggaag acgttgccca
      541 aatcgatgct ttcgttgcaa aaaccaggct ggatcgcgtt aaagacaaag attatatcaa
      601 tgtcaatctg acctacgaac ttgataagtt aacaaaaggg aatcagcaac tcggtagtgg
      661 tgagtggtca ttgattgctg aatctattga tccctcagca gtgcgccaat ttatcatcca
      721 gtataacatt gcgatgcag
//
LOCUS       DAJVUY010000374          730 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.382, whole genome shotgun sequence.
ACCESSION   DAJVUY010000374 DAJVUY010000000
VERSION     DAJVUY010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.382"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(29..>730)
                     /locus_tag="OQQ72_004379"
     CDS             complement(29..>730)
                     /locus_tag="OQQ72_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS2013852.1"
                     /translation="QMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYES
                     GRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGCSAEQRLAARK
                     ARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAE
                     NALRGVAVGRKNWLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPA
                     NRVRDLLPWNEVYWQ"
BASE COUNT          142 a          215 c          186 g          187 t
ORIGIN      
        1 ttaaaaaaag aacaaatggt agtgtccgct attgccagta cacctcattc cagggcaaca
       61 gatcgcgtac ccggtttgcc ggccagtcct ggagatgctc aataacgtaa cgcagccatt
      121 tttctggctc tacattgttc agacggcatg tgccgatcag cgagtacaac accaccgcat
      181 gttcgccacc gctgtcggaa cccgcgaaga gccagttttt ccggcctacg gccactcccc
      241 gtaaggcgtt ctctgcgatg ttgttgtcga tttccaccca gccattactg cagtacacgt
      301 tcagggcctt ccactgtttc agtaggtatg cgaacgcttt tgccgtatcc gagtgacgcg
      361 acagtgtttt catctgttgc tgtatccggt catacagtga ctgcatcagt ggcgcggctc
      421 ttgcttttct tgccgccaga cgctgttctg ctgaacatcc ccggacttct gcctcgatgg
      481 tatacagttc accgatacgc tgcagggctt ccgtggtgat gtcggttggc actcttgcat
      541 gcacatcgtg gatttttctc cgggcatggg ccatacacgc ggcttccgtt attctgccgg
      601 attcgtataa cgcccggtaa ccaccgtaag catctgcctg aagcacaccg ctgtaaccag
      661 ccaggtgatt ctgtggatgg atacctttcc ggtccgggct gtacgcgaac cagaccgccg
      721 ggggcatctg
//
LOCUS       DAJVUY010000375          726 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.383, whole genome shotgun sequence.
ACCESSION   DAJVUY010000375 DAJVUY010000000
VERSION     DAJVUY010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.383"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            35..726
                     /locus_tag="OQQ72_004380"
                     /pseudo
     CDS             35..726
                     /locus_tag="OQQ72_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          170 a          181 c          200 g          175 t
ORIGIN      
        1 atttagtgta tgatggtgat tttaaggtgc ttgcgtggct tccatttcca tcagatgtcc
       61 ttcctgctcc gctactgaag gcgtggtgcg taacggcaaa agcactgccg gacatcagcg
      121 ctatctctgc tctcattgcc gtaaaacatg gcaactacag ttcacttaca ccgcctctca
      181 gcccggtacg caccagaaaa tcattgatat ggccatgaat ggcgtcggat gtcgcgccag
      241 tgcacgcatt atgggcgttg gcctcaacac ggttttacgt cacttaaaaa actcaggccg
      301 cagtcggtaa cctcgcgcat acaaccgggc agtgatgtga ttgtctgcgc tgaaatggac
      361 gaacagtggg gctacgtcgg tgctaaatca cgtcagcgct ggctgtttta cgcgtatgac
      421 aggatacgga ggacggttgt ggcgcacgtc ttcggtgaac gcactctggc cacactggag
      481 cgtcttctga gcctgctgtc ggcctttgag gtcgtggtat ggatgacgga tggctggccg
      541 ctgtatgaat cacgcctgaa gggaaagctg cacgttatca gcaagcgtta cactcagcgc
      601 attgagcgac ataatctgaa tctgagacaa catctggcaa ggctgggacg gaagtcactg
      661 tcgttctcaa aatcggtgga gctgcatgac aaggtcatcg ggcattatct gaacataaaa
      721 cactat
//
LOCUS       DAJVUY010000376          712 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.384, whole genome shotgun sequence.
ACCESSION   DAJVUY010000376 DAJVUY010000000
VERSION     DAJVUY010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.384"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            43..>712
                     /locus_tag="OQQ72_004381"
     CDS             43..>712
                     /locus_tag="OQQ72_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HCS2013853.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLG"
BASE COUNT          170 a          189 c          192 g          161 t
ORIGIN      
        1 tggtgataaa cttatcatcc ccttttgctg atggagctgc acatgaaccc attcaaaggc
       61 cggcattttc agcgtgacat cattctgtgg gccgtacgct ggtactgcaa atacggcatc
      121 agttaccgtg agctgcagga gatgctggct gaacgcggag tgaatgtcga tcactccacg
      181 atttaccgct gggttcagcg ttatgcgcct gaaatggaaa aacggctgcg ctggtactgg
      241 cgtaaccctt ccgatctttg cccgtggcac atggatgaaa cctacgtgaa ggtcaatggc
      301 cgctgggcgt atctgtaccg ggccgtcgac agccggggcc gcactgtcga tttttatctc
      361 tcctcccgtc gtaacagcaa agctgcatac cggtttctgg gtaaaatcct caacaacgtg
      421 aagaagtggc agatcccgcg attcatcaac acggataaag cgcccgccta tggtcgcgcg
      481 cttgctctgc tcaaacgcga aggccggtgc ccgtctgacg ttgaacaccg acagattaag
      541 taccggaaca acgtgattga atgcgatcat ggcaaactga aacggataat cggcgccacg
      601 ctgggattta aatccatgaa gacggcttac gccaccatca aaggtattga ggtgatgcgt
      661 gcactacgca aaggccaggc ctcagcattt tattatggtg atcccctggg cg
//
LOCUS       DAJVUY010000377          703 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.385, whole genome shotgun sequence.
ACCESSION   DAJVUY010000377 DAJVUY010000000
VERSION     DAJVUY010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.385"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>703
                     /locus_tag="OQQ72_004382"
     CDS             <1..>703
                     /locus_tag="OQQ72_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSso6 family transposase"
                     /protein_id="HCS2013854.1"
                     /translation="GLYRRLVKSGFDCMVCAPSLIPKKPGERVKTDRRDAIRLVRSLR
                     AGDLSAVYVPGIEDEAFRDLARAWASARDDLRHARQRLKSFLLVHGVHYVGRADWGPA
                     HRRWLSKYSFESPWRQLAFDEHRRTIEDRQAQCERLESALKEAVTEWRLYPVVEALQA
                     MRGIQFITAVGLISELGDLTRFEHPRQLMSWFGITPSEYSSGGSRHQGSITKAGNSYA
                     RKLLVEAAWSYRHPAR"
BASE COUNT          164 a          174 c          201 g          164 t
ORIGIN      
        1 ggactttatc gtcggctggt gaaatccggt tttgactgca tggtctgcgc cccctcactt
       61 atcccgaaaa aaccggggga gcgggttaaa accgatcgcc gtgatgccat cagacttgtg
      121 cgttcactgc gtgcaggaga tctttctgct gtctacgtac ccggcattga agatgaggca
      181 ttccgggatt tggcccgggc atgggcatct gcccgcgatg atttacggca tgcaaggcaa
      241 cgtctgaaat cgtttcttct ggttcatggg gtccattatg tcgggcgagc agattggggc
      301 cctgcacacc gacgctggct cagcaaatac tcattcgaaa gtccctggcg acaattagct
      361 tttgacgaac accgtcgtac aatagaagac cggcaggcac aatgtgaacg gctggaatcc
      421 gccctgaagg aggccgttac cgaatggagg ctgtatccgg tagtagaggc gctgcaagcc
      481 atgcgaggga ttcagtttat tactgcggtt ggattaattt ctgaactggg tgatctgacc
      541 cgttttgaac atccacgaca actgatgtca tggtttggta tcacgccatc agaatattca
      601 tcgggtggaa gcagacatca gggcagcatt accaaagccg gaaacagcta tgccagaaag
      661 ctattggtcg aggcagcgtg gagttaccgt catccggcac gca
//
LOCUS       DAJVUY010000378          697 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.386, whole genome shotgun sequence.
ACCESSION   DAJVUY010000378 DAJVUY010000000
VERSION     DAJVUY010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.386"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..568
                     /locus_tag="OQQ72_004383"
     CDS             <1..568
                     /locus_tag="OQQ72_004383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS2013855.1"
                     /translation="EPAACARHCVNRMPKASLESVLVIGAGTIGLSIVQALRIMGAGK
                     ITVIEPDAAKRALALKLGAAEVWAPGELAADVRFTGAIDVVAAQATLNDACTRVYAGG
                     TVVCMGVPSGPREIPLPMMQRFERDLLNSGMYIPEDFDAVIEWLADGRFDTSELVTDL
                     FAIEDAAAAFERAQQNDSIKVMLQFAPE"
BASE COUNT          163 a          170 c          200 g          164 t
ORIGIN      
        1 cgaaccggcg gcttgtgccc gtcactgcgt taaccgaatg ccgaaagctt ctctggaaag
       61 cgtactggta attggtgccg gaacgatagg cttatccatc gtgcaggcac tgcgcattat
      121 gggggcaggt aagattaccg tgattgaacc tgacgctgcc aaacgcgcgc tggcgttaaa
      181 gctgggcgca gcagaagttt gggcaccagg tgagctggcc gcagatgtgc gatttacggg
      241 ggcgattgat gtcgttgcag cgcaggccac gcttaacgat gcatgtaccc gtgtatatgc
      301 cggaggcacc gtcgtgtgca tgggcgtacc aagtgggccg cgtgaaatac cattaccgat
      361 gatgcaacgt ttcgagcgtg acttgctcaa ctctggcatg tacatccctg aagatttcga
      421 tgctgttatc gaatggctgg cggatgggcg gtttgatacc agtgaactgg ttaccgattt
      481 atttgccatt gaggatgcag cggcggcatt tgaacgcgcg cagcaaaatg actccataaa
      541 ggtcatgctg caatttgcgc cggaatgatt ttctaaatct ctgtctggcg ctgcgtcacg
      601 tcagcgccac cctacaacaa ttaaaaagga cactgcgatg agtcaaatca ccagtcctgc
      661 aacttattca attagtcggc cacaggacgt aattgat
//
LOCUS       DAJVUY010000379          673 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.387, whole genome shotgun sequence.
ACCESSION   DAJVUY010000379 DAJVUY010000000
VERSION     DAJVUY010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.387"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            193..462
                     /locus_tag="OQQ72_004384"
     CDS             193..462
                     /locus_tag="OQQ72_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013856.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
     gene            459..673
                     /locus_tag="OQQ72_004385"
                     /pseudo
     CDS             459..673
                     /locus_tag="OQQ72_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585073.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          168 a          154 c          197 g          154 t
ORIGIN      
        1 ctgtcagcgc cagtgatagg acaggtgaaa cctgtcaata cgtaccggct tacgccgggc
       61 ttcggcggtt ttactcctct gccatatgca acaacggagt gccgccttac atgccgctgg
      121 cgcggcatat cctggtgacg atatctgaac agttatatac tgtgtatata cgtggtaatg
      181 acgaggtggc aaatggcaca ggttaatatg agtgtaagaa tcgacgcaga actgaaggat
      241 gcttttatgg ccgctgcaaa aagcatggac cgtaatggct ctcagttaat ccgggatttt
      301 atgcgccaga ccgttgaacg gcagcacaat tcttggttcc gtgaccaggt tgcggcaggc
      361 cgtcagcaac tcgaatgcgg tgatgtgctt ccccatgaca tggtcgaatc ctctgctgct
      421 gcatggcggg atgaaatgag caggaagatt gctgataaat gatggagatg ttctggacca
      481 tgctggccat ccaggacagg aagcgcattc gtagtacatt gcggagcaga acctgatggc
      541 cgccattgaa ccggacgaac ggattggtta ttcagccagc agcctggcag ggcagccgta
      601 taaaggccgc aacggtcgtg tggaaggaac atctggacca cacaaggtag cgtgtaacgt
      661 tattttgtgt gaa
//
LOCUS       DAJVUY010000380          658 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.388, whole genome shotgun sequence.
ACCESSION   DAJVUY010000380 DAJVUY010000000
VERSION     DAJVUY010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.388"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            288..624
                     /locus_tag="OQQ72_004386"
                     /pseudo
     CDS             288..624
                     /locus_tag="OQQ72_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          220 a          117 c          122 g          199 t
ORIGIN      
        1 tatcaattct tactttttaa tcccactgtc ctttccacca gaaacatacc tcgtttctac
       61 tgtattttga gaatatagtt cccagaatac caattatata taatacgttg taatatatgt
      121 attccaatta aagccgttat tataataatt atcatatatg gttcttttca tgttgatttc
      181 gtcagaaaca gaaaatgctg ataatgaatt gtgaataatc aaactgacct ctaattatcc
      241 tgtatggagt agtgcttatt ttcgactcaa tttctactga ttagattatg gttatcagta
      301 cagtgggtta tgaaaaacgg actggatctg ccagcagtgc ttctattatt attcaaaaag
      361 aacttcagcc ggacaatgct ataatccagg gaaaggctat aagctctgtt ggacggaatg
      421 tggaaatcag cactggtaaa aaggggaact gacattaaca caagaaggat tcctgcaagc
      481 aactgcttat ctgtccggaa cgcagaatta aagcatgacc acacaggagc cagaatactg
      541 tggtcgtacg cattcagtat tgtgacaact aatagaaata aaaatctggc cggtgcgaat
      601 attaaacgat gcgataccgt atagtgtaag tcaaaagtaa cggggtattt aaaccatc
//
LOCUS       DAJVUY010000381          654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.389, whole genome shotgun sequence.
ACCESSION   DAJVUY010000381 DAJVUY010000000
VERSION     DAJVUY010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.389"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..530
                     /gene="istB"
                     /locus_tag="OQQ72_004387"
     CDS             <1..530
                     /gene="istB"
                     /locus_tag="OQQ72_004387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS21-like element IS100kyp family helper ATPase
                     IstB"
                     /protein_id="HCS2013857.1"
                     /translation="APQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVR
                     AGIQVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQKEAKLF
                     FQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKGESYRL
                     RQKRKAGVIAEANPE"
     gene            546..>654
                     /locus_tag="OQQ72_004388"
     CDS             546..>654
                     /locus_tag="OQQ72_004388"
                     /inference="COORDINATES: protein motif:HMM:NF015365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013858.1"
                     /translation="MGRWWRYKWITFHPSLTQHWLWYAYNTKTGGVLAYT"
BASE COUNT          183 a          159 c          161 g          151 t
ORIGIN      
        1 gagcaccgca gaagcaactc cagtcgttac gctcactcag cttcatagaa cgtaatgaaa
       61 atatcgtatt actggggcca tcaggtgtgg ggaaaaccca tctggcaatc gcgatgggct
      121 atgaagcagt ccgtgcaggt atccaagttc gcttcacaac agcagcagat ctgttacttc
      181 agttatctac ggcacaacgt cagggccgtt ataaaacgac gcttcagcgt ggagtaatgg
      241 ccccccgcct gctcatcatt gatgaaatag gctatctgcc gttcagtcag aaagaagcaa
      301 aactgttctt ccaggtcatc gctaaacgtt atgaaaagag cgcaatgatc ctgacatcca
      361 atctaccgtt cgggcagtgg gatcaaacgt tcgccggtga tgcagcactg acctcagcga
      421 tgctgggccg tatcttacac cactcacatg tcgttcaaat caaaggagaa agctatcgac
      481 tcagacagaa acgaaaggcc ggggttatag cagaagctaa tcctgagtaa aacggtggat
      541 caatattggg ccgttggtgg agatataagt ggatcacttt tcatccgtcg ttgacacaac
      601 actggctctg gtatgcgtac aacactaaaa ctggcggtgt gttggcttac actt
//
LOCUS       DAJVUY010000382          653 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.390, whole genome shotgun sequence.
ACCESSION   DAJVUY010000382 DAJVUY010000000
VERSION     DAJVUY010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.390"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(85..653)
                     /locus_tag="OQQ72_004389"
                     /pseudo
     CDS             complement(85..653)
                     /locus_tag="OQQ72_004389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
BASE COUNT          160 a          156 c          144 g          193 t
ORIGIN      
        1 ccgcgcctta tatccccgcc ctgaaggatg gggttttacg gcgcaccgga taaaaagcgc
       61 catctaacga tggcgcgtct ggaactactt tttgttaacg tcaaacatgg tggcatcggt
      121 cgccatgtca tcaataactt gtttaatatt ttcgaaagcc attggcgtac tttcgttatt
      181 caggtcttta ccttagccct gacgaacgac tttgataacc ggtttattag tcgctgcatc
      241 aatcagctca ccttcaaaat agaggcgagt atccatggta cggtgacctg tagccatttg
      301 cgtccccgca accactaatg caacaggaac cacttcatag aattgcagcc cttctttgct
      361 ggtatctaca ccggtaatgg ccccacggaa aatcagacta cgcggcccag cggtggtaac
      421 cagtggttta cgctgcgcta tcgcttcttt catttcggtg ttggtatagt tcaaaatttt
      481 atccagaact ttctgcccta cctgggtaga aggttttggc accggataat aagtgattgg
      541 gttccagacg atgctgtcat atttgctttg atcaaaactc gggtctaccc aacgtaaaac
      601 aggtttacct gttgctgagg ttgtttcttt taaatcagag taattgttta aaa
//
LOCUS       DAJVUY010000383          650 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.391, whole genome shotgun sequence.
ACCESSION   DAJVUY010000383 DAJVUY010000000
VERSION     DAJVUY010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.391"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(154..>650)
                     /locus_tag="OQQ72_004390"
     CDS             complement(154..>650)
                     /locus_tag="OQQ72_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS2013859.1"
                     /translation="AGLGTKDYSSHSLYVGAEAGYRYHVTEDSWIEPQAELVYGAVSG
                     KRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLFANGE
                     TVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLEFEKSAFGKYNVDNAINANF
                     RYSF"
BASE COUNT          179 a          165 c          146 g          160 t
ORIGIN      
        1 ttttttattc gctcatgttt aaggcataac aggcagataa ataatgtcag aaaaagaaag
       61 ctaataatga gagcaagagc gatatagtct gtcacagggt aatacatatt ctctccggta
      121 gaagaagggc cgcaaacgcg gcccgggctg ttatcagaaa gagtaacgga agttggcgtt
      181 gatcgcgtta tccacgttgt atttaccaaa tgccgatttc tcaaactcaa gaccaaagcg
      241 aagattatcg cgaatttcgg cgttgagacc aacattcatg agaatacgac cgtctttttc
      301 acctttgata cgtttctcac cggacgcatc acgcagtacg gtttcaccgt tggcaaacag
      361 gtcaaactgg tagccaaggc cggcgcgggc tgtgactttc cagtccttac cggagaagga
      421 tttacccaca tcaacaccgg tacgcccaat cagcggatta aagtccttat ccttcatggt
      481 cacgctcatt ccgcgatcct gccagtcgaa ccgtttacct gatacggccc cataaaccag
      541 ttctgcctgc ggctcaatcc aggagtcttc tgttacatga tagcggtagc ctgcttcagc
      601 acccacatac aaggaatgag aactgtagtc ttttgttccg agcccagcaa
//
LOCUS       DAJVUY010000384          632 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.392, whole genome shotgun sequence.
ACCESSION   DAJVUY010000384 DAJVUY010000000
VERSION     DAJVUY010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.392"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            106..>632
                     /locus_tag="OQQ72_004391"
     CDS             106..>632
                     /locus_tag="OQQ72_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630-like element IS630 family transposase"
                     /protein_id="HCS2013860.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHP"
BASE COUNT          162 a          171 c          167 g          132 t
ORIGIN      
        1 cctaaatagc tgcgcggaat agtagatccc tttgagggaa cttagcccgg attgtgcgat
       61 ctgatcaatc gccaaatcaa aacaaatcac caaccggact gagcaatgcc gatcatagca
      121 ccaatttccc gtgacgaacg acgcctgatg cagaaagcca tccataaaac acacgataaa
      181 aattatgccc gcagactgac tgccatgctg atgctgcacc ggggcgaccg tgtcagcgac
      241 gttgccagaa cgctctgctg cgcccgttcc tctgttggac gctggattaa ctggttcacg
      301 cagtcgggtg ttgagggact gaaatcatta cctgccgggc gtgcccgtcg ctggccgttt
      361 gagcatatct gcacactgtt acgtgagctg gtaaaacatt ctcccggcga ctttggctac
      421 cagcgttcac gctggagtac agaactgctg gcaataaaaa tcaatgagat aaccggttgc
      481 cagttaaatg ccggaaccgt tcgccgctgg ttgccgtctg cggggattgt gtggcgaagg
      541 gctgcgccaa ctctgcgtat ccgtgacccg cataaagatg aaaagatggc agcaatccat
      601 aaagcactgg acgaatgcag cgcagagcat cc
//
LOCUS       DAJVUY010000385          627 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.393, whole genome shotgun sequence.
ACCESSION   DAJVUY010000385 DAJVUY010000000
VERSION     DAJVUY010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.393"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            109..456
                     /gene="grxD"
                     /locus_tag="OQQ72_004392"
     CDS             109..456
                     /gene="grxD"
                     /locus_tag="OQQ72_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HCS2013861.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKSEEPDAE"
     gene            complement(507..599)
                     /locus_tag="OQQ72_004393"
     CDS             complement(507..599)
                     /locus_tag="OQQ72_004393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS2013862.1"
                     /translation="MNDLPVRQTPMFTLLREAGFSSSPQGLDWG"
BASE COUNT          166 a          163 c          160 g          138 t
ORIGIN      
        1 caaagggata aaatagcaaa agcgtgatga aaatgttatt ttccgatgcc gcactgaccc
       61 gctacaatgt cagattactg ccgtaaagaa gtttgaggaa gcaagacaat gagcaccact
      121 atcgaaaaaa tccaacgcca gattgctgaa aacccgatcc tgctgtacat gaaaggttca
      181 ccgaaactgc cgagctgcgg tttctctgcc caggcagtcc aggcgcttgc cgcatgtggc
      241 gaacgttttg cctatgttga tattctgcag aatccggaca ttcgtgcgga actgccgaaa
      301 tatgctaact ggccgacctt cccgcaactg tgggttgacg gcgagctggt cggcggttgt
      361 gatatcgtga tcgaaatgta tcagcgtggc gaactgcagc agctgatcaa agaaactgcc
      421 gctaaataca agtctgaaga gccggacgcg gaataatccg tcctgcaata ctgacggatg
      481 cgaacgggca tccgtcagtc ctttctctat ccccaatcca gcccttgtgg cgaacttgaa
      541 aatcccgcct cacgcagcag cgtaaacatc ggcgtttgcc ggaccggtag atcattcact
      601 tctgttagcg taaagcgcag ccgtggt
//
LOCUS       DAJVUY010000386          621 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.394, whole genome shotgun sequence.
ACCESSION   DAJVUY010000386 DAJVUY010000000
VERSION     DAJVUY010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.394"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..588
                     /locus_tag="OQQ72_004394"
     CDS             <1..588
                     /locus_tag="OQQ72_004394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein"
                     /protein_id="HCS2013863.1"
                     /translation="TITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINK
                     NCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAFRGAKHERKNNNIYSSCSLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLE
                     FSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS"
BASE COUNT          166 a          144 c          167 g          144 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga cacctggcgg acggctgacg
       61 gcgaaaaatg ccgatatcag cggtaacgtg aacgcgaact ccgggacgct caacaacgtc
      121 acgattaata agaactgtcg ggttctggga aaattgtccg cgaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa acctttccca cgggactccc gggcaccgga gaggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgatcggca aattgttatt
      301 cccgcggtgg cgtttcgcgg tgctaaacat gagcggaaga ataacaatat ttattcgtca
      361 tgcagcctga tagtgaagaa aaacggtgct gaaatttata accgaacgac cctggataat
      421 acgctgatat atacgggtgt tattgatatg cctgccggtc acggtcacat gacgctggag
      481 ttttctgtat cggcatggct ggtaaatggc tggtatccca cagcaagtat cagcgatttg
      541 ctggttgttg tgatgaagaa agccactgca ggcatcacga ttagctgaat tttataaccc
      601 agatacgggc accagaaatg g
//
LOCUS       DAJVUY010000387          590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.395, whole genome shotgun sequence.
ACCESSION   DAJVUY010000387 DAJVUY010000000
VERSION     DAJVUY010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.395"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            244..>590
                     /locus_tag="OQQ72_004395"
     CDS             244..>590
                     /locus_tag="OQQ72_004395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS2013864.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNN"
BASE COUNT          170 a          110 c          122 g          188 t
ORIGIN      
        1 atcgccatac cctaaccaat tgcacttgtg aatttatttt tgcttaattt tgaattaaga
       61 aaatttaatt tgttcaaaag cccttaaagt gcacaatagg cgtcctaatg aacaatggtt
      121 gtaaattttg gtaacaaata tcattgctca ttaatatcta gcatctgctt ataacatttg
      181 tgtcatgaat agtcattctt caaaccagta gtctgactaa tggaatttta ttcaaggatt
      241 tttatgtcta aaaaattagg ttttgccctg tctggtctta tgctggcaat ggttgcaggt
      301 actgcttctg ctgatatgga tggtggtcag ttaaatatca gtggtctggt tgttgataac
      361 acctgtgaaa cccgcgttga cggcggtaat aaagatggtc tgatcctgct gcaaactgca
      421 actgttggtg aaatcgatgc tggcgtgctg aatgacaccg ttggcgctaa agccaaacct
      481 ttcagcatca ccgttgactg cagcaaagca aatccgaatc caggtagtac agctaaaatg
      541 accttcggtt ctgttttctt tggtaatagc aaaggaacgc tgaacaacga
//
LOCUS       DAJVUY010000388          590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.396, whole genome shotgun sequence.
ACCESSION   DAJVUY010000388 DAJVUY010000000
VERSION     DAJVUY010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.396"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..486)
                     /locus_tag="OQQ72_004396"
     CDS             complement(<1..486)
                     /locus_tag="OQQ72_004396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS2013865.1"
                     /translation="MQNRKWILSSLVMTFFGIPILTQFLAAVVAMLGVGLAGIIEVCN
                     ILITPTSYLLLNIFMLALGALMLFFSGRVWAGDSAPEKREIAVWRQCLFLVPGLLILV
                     GWIIALHLADYQFHQMGSGWLADLMLPWLGVLLVSVVGGEYWWIVIIPVGAHISFSLG
                     YG"
BASE COUNT          180 a          158 c          118 g          134 t
ORIGIN      
        1 gccgtacccc agcgaaaaac tgatatgcgc gccaacgggt ataatgacta tccaccagta
       61 ctcacctccg actactgaga ctaacaaaac gcccagccag gggagcataa gatcagccaa
      121 ccaacccgat cccatctggt gaaattgata atctgccaga tgcagcgcga ttatccagcc
      181 aaccaggatt aataaaccgg gtactaaaaa aagacattgt cgccagacgg ctatttctct
      241 tttttctggt gcactatcgc ctgcccatac tcgccccgag aaaaatagca ttaatgcgcc
      301 cagcgccagc ataaaaatgt tgagcagaag gtaacttgtt ggcgtgataa ggatattaca
      361 aacttcaata ataccggcaa gtccgacacc cagcatagca acaaccgccg ccaaaaattg
      421 cgtcagtatg gggatgccga aaaaagtcat taccagcgag gacaaaatcc attttctgtt
      481 ttgcattatt ctttccattc tttttgaatg gtgaaattat actccccgag tccccttgcc
      541 ccttctggac acttttccga aatgatggcg gaaaaaaacg ggaccctttg
//
LOCUS       DAJVUY010000389          585 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.397, whole genome shotgun sequence.
ACCESSION   DAJVUY010000389 DAJVUY010000000
VERSION     DAJVUY010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.397"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>585
                     /locus_tag="OQQ72_004397"
     CDS             <1..>585
                     /locus_tag="OQQ72_004397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS2013866.1"
                     /translation="MAETIRQRHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSA
                     HPIQQLILEITERDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDVLK
                     IDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGVHILQGY
                     LYAQPMPLRDFPKCLAGSQPPPARHNGHITPIMPL"
BASE COUNT          143 a          151 c          147 g          144 t
ORIGIN      
        1 atggcagaaa ccattcgtca gcgccatgtt ttcccgatga gtagtcagtt tcatgttggc
       61 attaacgtcg cacccagcca ttttcgccgt ggtgtgctga taaaagatct caatcagtac
      121 tggtttagcg ctcacccgat tcagcaactg atcctcgaaa tcaccgaacg cgatgcctta
      181 ctggatgttg attatcggat tgcccgcgag ctacatcgta aaaacgtcaa actggcgatt
      241 gatgacttcg gcaccggcaa cagttcattt tcctggcttg aaacattacg tcctgacgtg
      301 ctgaaaattg ataagtcatt taccgcagct ataggttctg acgcggttaa ctcgacggtg
      361 accgatatca tcatcgcgct ggggcaaaga ctgaatattg aactggtggc ggagggcgtg
      421 gaaacgcaag aacaggcgaa gtatttgcgc cgtcatggcg tgcatatttt gcaagggtat
      481 ttgtacgcac agccgatgcc gctacgcgat tttcccaaat gcctggcggg cagccaaccg
      541 ccgcccgccc ggcataatgg acatatcacg cccattatgc cgtta
//
LOCUS       DAJVUY010000390          574 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.398, whole genome shotgun sequence.
ACCESSION   DAJVUY010000390 DAJVUY010000000
VERSION     DAJVUY010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.398"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(138..212)
                     /locus_tag="OQQ72_004398"
     tRNA            complement(138..212)
                     /locus_tag="OQQ72_004398"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(177..179),aa:Gly,seq:tcc)
     gene            complement(216..291)
                     /locus_tag="OQQ72_004399"
     tRNA            complement(216..291)
                     /locus_tag="OQQ72_004399"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(256..258),aa:Thr,seq:tgt)
     gene            complement(294..370)
                     /locus_tag="OQQ72_004400"
     tRNA            complement(294..370)
                     /locus_tag="OQQ72_004400"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(334..336),aa:Arg,seq:tct)
     gene            complement(372..448)
                     /locus_tag="OQQ72_004401"
     tRNA            complement(372..448)
                     /locus_tag="OQQ72_004401"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(412..414),aa:Ile,seq:cat)
BASE COUNT          150 a          150 c          139 g          135 t
ORIGIN      
        1 agtgcttatg aatgatcgca cgcccgaagg ttagtatttc tgcacagcaa ttttgcaaaa
       61 aaaggcgatc attcataact taaacgtctt tcagtcactc cgggatttcc catcatcgca
      121 gactgaaaga ctctgactgg agcgggcagc gggaatcgaa cccgcatcat cagcttggaa
      181 ggctgaggta atagccatta tacgatgccc gcatatggtg ccgactaccg gaatcgaact
      241 ggtgacctac tgattacaag tcagttgctc tgcctgctga gctaagtcgg cgctggccca
      301 ccaccgagga ctcgaacctc gcaccgtcaa cttagaaggt tgatgctcta tccggatgag
      361 ctagtggtgg ttggtggccc ttgctggact tgaaccagcg acctggcgat tatgagtcgc
      421 tcgctctgac caactgagct aaagggccgg aggcagaata ataaccatat gtcatcacat
      481 ctgcaaactc atctgaccac cagcacgttt aacgtcctgt gccgtttttc aggtataaaa
      541 aaacccgcat aaagcgggct ctttcaaatg tcca
//
LOCUS       DAJVUY010000391          550 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.399, whole genome shotgun sequence.
ACCESSION   DAJVUY010000391 DAJVUY010000000
VERSION     DAJVUY010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.399"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            65..253
                     /locus_tag="OQQ72_004402"
     CDS             65..253
                     /locus_tag="OQQ72_004402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1187 family protein"
                     /protein_id="HCS2013867.1"
                     /translation="MYKITATIEKEGGSPASWTRYSKTKLTKSECEKMLSGEKEAGVS
                     REQKVKLINFNCEKLQSS"
     gene            373..519
                     /gene="xisR"
                     /locus_tag="OQQ72_004403"
     CDS             373..519
                     /gene="xisR"
                     /locus_tag="OQQ72_004403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excisionase family protein"
                     /protein_id="HCS2013868.1"
                     /translation="MVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKR
                     GIIW"
BASE COUNT          186 a           98 c          128 g          138 t
ORIGIN      
        1 atacgatgag aatattccgg tgtaaaacca agtgcatttt gggaaaatat taatggaggt
       61 gttcatgtat aaaattacag ccactattga aaaggaaggt ggttctcctg ccagctggac
      121 aagatactca aagacaaaac taacgaaatc agaatgcgaa aaaatgctct caggggaaaa
      181 agaagctggc gtttccagag agcagaaagt aaaactgata aattttaatt gcgagaaact
      241 tcagtcctcg tgaattgcat tgtattcaaa ttaaaacttc atagctgatt attaataatc
      301 aacatcgggc gtcaatttca gcctaacatt ggcgcctgcc agaggtgatg cgatggcttt
      361 aatgaagagt ggatggttga atacggcctg atgcttcgca ctggtctggg tgccagacaa
      421 attgaagcat accgccagaa ctgttgggtg gaaggcttcc acttcaaacg agtatctcct
      481 ttagggaagc cagacagtaa gcgagggatt atctggtaaa actatccgaa cataaatcag
      541 tttatcaaag
//
LOCUS       DAJVUY010000392          548 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.400, whole genome shotgun sequence.
ACCESSION   DAJVUY010000392 DAJVUY010000000
VERSION     DAJVUY010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.400"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>548
                     /locus_tag="OQQ72_004404"
     CDS             <1..>548
                     /locus_tag="OQQ72_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS2013869.1"
                     /translation="EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDD
                     DLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKL
                     AAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVA
                     LEVEQRVLAHPLYPVLTSMPGV"
BASE COUNT          118 a          181 c          142 g          107 t
ORIGIN      
        1 tgaagctaaa actgatgctc gtgacgctgc catcattgcc gaagctgccc gtaccctgcc
       61 tcacgcgcta cgcacgctga aactggctga cgagcaaatc gccgaactct ccatgctctg
      121 cggcttcgat gatgatcttg ccgcacagac aacgcaggcc agcaaccgta tccgcggcct
      181 tctgacccag atacatccgg cactggagcg cgttctcggt ccgagacttg agcacccggc
      241 ggtactcgat cttctccagc gatatccctc accagaaaaa ctcgcttcgc tgggtgagaa
      301 gaagctggca gcccagctct gcaaacttgc gcctcgtctg ggtaaacgcc ttgcagcaga
      361 catagctcag gcactggccg aacaaaccgt cgtcgttccc ggcacgaatg ccgctgccgt
      421 agtactgcca cgtctggcac tccagctcat cacgctgcgt aagcaaagag acgaggtggc
      481 gcttgaggta gaacagcgag ttcttgctca ccctctttac ccggtcctga ccagtatgcc
      541 cggagtcg
//
LOCUS       DAJVUY010000393          515 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.401, whole genome shotgun sequence.
ACCESSION   DAJVUY010000393 DAJVUY010000000
VERSION     DAJVUY010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.401"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            235..515
                     /locus_tag="OQQ72_004405"
                     /pseudo
     CDS             235..515
                     /locus_tag="OQQ72_004405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001179707.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          132 a          136 c          126 g          121 t
ORIGIN      
        1 tccccgccag cccggctaag atggaggcac ggcacagccc gcacacgacg ctgaggctac
       61 agagctgaaa acccacaagg ccatgccccg catggccggg taaagcggag ccggcggcga
      121 cttcctttgt gctctgtccg ggaccggcag gaaaaaggcg gggataatga gatggtcacc
      181 cccaccctaa cagcagtacg ctgttaaggt gaatccctta acggagagac catcatacag
      241 aacatcacac ttattggtat cgatctcgga aagcattcct tccacattca ttgtcaagac
      301 aagtctggta aggctcttct gcgtaaaaaa tttacccagt actaaactga tgcagtttct
      361 ggcaacatgt ccgccctcag ttgttgtaat ggaagcctgt gcgggtgcac actttttggc
      421 tcgccgtatc tctgaatttt ggacatgaaa ctaagctgat ttctccacag ttcgttcgcc
      481 cgtttgtcaa aagtaataag aatgattttg ttgat
//
LOCUS       DAJVUY010000394          514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.402, whole genome shotgun sequence.
ACCESSION   DAJVUY010000394 DAJVUY010000000
VERSION     DAJVUY010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.402"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..279
                     /locus_tag="OQQ72_004406"
     CDS             <1..279
                     /locus_tag="OQQ72_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HCS2013870.1"
                     /translation="SLNVYCRNGQVEIDNNIGENALRSVAVGRKNYLFFGSDNGGESA
                     AIIYSLLVTCKLNGVEPEDWLREVIVKLNDWPSNRVHELLPWNFSAVK"
BASE COUNT          125 a          115 c          139 g          135 t
ORIGIN      
        1 agcctgaacg tgtactgtcg taatggccag gtggaaatcg acaacaacat cggtgaaaac
       61 gcgctgcgat cggtggcggt tggaagaaaa aattatctct tcttcggttc tgacaacggt
      121 ggagaaagcg cggcgattat ctacagtctg ctggtcacct gcaaactgaa cggagtggag
      181 ccggaggact ggttgcgcga agtgatcgtg aagctcaatg actggccgtc gaaccgagtg
      241 catgaactgc tgccctggaa cttctcagct gtaaaataat ccttccgcta cgtacttctc
      301 tgggcgctta ccactcaacg gcatcgtcaa aattatcaaa gcgcagaaca tagatttatc
      361 atgtgtttta tggatggctt tctccatcag gcatcgttcg tcacgggaaa ttggtgctat
      421 gatcggcatt gatcagtccg gttggtgatt tgttttgatt tggcgattga tcagatcgca
      481 caatccgggc tgagttccct ctaagtgatc tagg
//
LOCUS       DAJVUY010000395          509 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.403, whole genome shotgun sequence.
ACCESSION   DAJVUY010000395 DAJVUY010000000
VERSION     DAJVUY010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.403"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>509)
                     /gene="ipaH3"
                     /locus_tag="OQQ72_004407"
     CDS             complement(<1..>509)
                     /gene="ipaH3"
                     /locus_tag="OQQ72_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase IpaH3"
                     /protein_id="HCS2013871.1"
                     /translation="VLEITQNALISLPELPASLEYLDACDNHLSTLPELPASLKHLDV
                     DNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEAL
                     DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS
                     SRIRESLSQ"
BASE COUNT          131 a           89 c          139 g          150 t
ORIGIN      
        1 gttgcgacag agactccctg atccgtgagg acagaggatt gtcttcgagg atgatagtgc
       61 aggtcggatc aaggctaagt atattttccg gaatgtgtgt gatgcgattc tcgcggcacc
      121 ggaaaaatat ctcggtttcc tctgagtgat gatttcttac aggtacggct ggtaggcttt
      181 ccagaagatt agtacttaca tcgagcgctt ccagtgattc aggtaactca gggagaaatg
      241 tcagctggtt atttcttact gagagcactt ccagcgatgt aggtaattca ggaagcatgg
      301 ttagctgatt gttatctgca ttaatatatt ccagcaatgc aggcaattca ggaagcatgg
      361 ttagttggtt gttatctaca tcaagatgtt tcagagatgc gggtaattca ggaagtgttg
      421 acaggtgatt gtcacaggcg tcaaggtatt ccagcgatgc tggcaattct ggtaatgata
      481 ttagggcatt ctgagtgatt tccagaaca
//
LOCUS       DAJVUY010000396          506 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.404, whole genome shotgun sequence.
ACCESSION   DAJVUY010000396 DAJVUY010000000
VERSION     DAJVUY010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.404"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(231..482)
                     /gene="dgcZ"
                     /locus_tag="OQQ72_004408"
                     /pseudo
     CDS             complement(231..482)
                     /gene="dgcZ"
                     /locus_tag="OQQ72_004408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416052.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcZ"
BASE COUNT          131 a          120 c          109 g          146 t
ORIGIN      
        1 tgggatgact aatgaacgga gataatccct cacctaaccg gccccttgtt acagttgtgt
       61 acaaggggcc tgatttttat gacggcgaaa aaaaaccgcc agtaaaccgg cggtgaatgc
      121 ttgcatggat agatttgtgt tttgctttta cgctaacagg cattttcctg cactgataac
      181 gaatcgttga cacagtagca tcagttttct caatgaatgt taaacggagc ttaaactcgg
      241 ttaatcacat tttgttcgtc aataaacata cagcgatttc ttcccgtttg cttaccctca
      301 tacattgccc ggtctgctct tccaatgacc acatccagag gctcttcagg aaatgcgcga
      361 ctgacacctg ctgtcacggt aatgttgata tgcccttcag aatgtgtgat ggcatggtta
      421 tcgactaact ggcaaattct gacacctgca cgacatgctt cttcatcatt agccgctttg
      481 aggtgtactg gcaatagcgg acacta
//
LOCUS       DAJVUY010000397          498 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.405, whole genome shotgun sequence.
ACCESSION   DAJVUY010000397 DAJVUY010000000
VERSION     DAJVUY010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.405"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..451
                     /locus_tag="OQQ72_004409"
     CDS             <1..451
                     /locus_tag="OQQ72_004409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS2013872.1"
                     /translation="GDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGA
                     HSDFDSIRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVG
                     ESILGSRPEIRFYGTYINILDNELSNFKFNENSKDEFMAGIQAEVWW"
BASE COUNT          150 a           80 c          122 g          146 t
ORIGIN      
        1 tggtgatcat accaatggga tcgcctggcg tttaatctct cagggcgaga tgtatcttac
       61 tgacaatatt attatggcta acgcgcttgt ctattctcac ggcgaagatg tttatagtta
      121 tgaaagtggt gctcatagtg attttgacag tattcgcact gtaataagac cggcctggat
      181 ctggaataca tggaatcaga cggggcttga attaggctgg tttaagcaac agaacaaaac
      241 tcagcagggt gtaacactaa atgaatcggc ttataaaacg acactctggc atgcattgaa
      301 agtgggtgaa agcattttag gttcacgacc agaaattcgc ttctatggaa cgtatatcaa
      361 tattctggat aacgaattat cgaattttaa gtttaatgag aacagcaaag acgagtttat
      421 ggccggcatc caggcggaag tctggtggta atctatttta gttaaggagt tgtgtatgtc
      481 aggatttaaa aaaggttt
//
LOCUS       DAJVUY010000398          491 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.406, whole genome shotgun sequence.
ACCESSION   DAJVUY010000398 DAJVUY010000000
VERSION     DAJVUY010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.406"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            74..274
                     /locus_tag="OQQ72_004410"
     CDS             74..274
                     /locus_tag="OQQ72_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000095744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlcI/YnfO family protein"
                     /protein_id="HCS2013873.1"
                     /translation="MSSKNRTRRTTTRNIRFPNQMIEQINIALDLKGSGNFSAWVIEA
                     CRRRLATDATHLRPASMKNNEK"
BASE COUNT          168 a          116 c           95 g          112 t
ORIGIN      
        1 tgatctgcat caaattaacg taaaagcaac ttcagataat acaaatcagc aacactgaat
       61 atggggaaac attatgtcat caaagaacag aacccgcaga acaacaaccc gcaacatccg
      121 atttccaaac cagatgattg aacaaattaa catcgctctt gatctgaaag gttcaggaaa
      181 cttttcagcg tgggttattg aagcctgcag gagaaggctg gcaacagatg caacgcatct
      241 gcgcccggcc agcatgaaaa ataacgagaa atgaacgttc ggttacagga gcaggtaccc
      301 actgtcctcc aacaatattt catcttcata tccgacggaa caagacttac cctgccggga
      361 tgtacagaat aacaacagag tgataattaa tttctgatga aataatcagg gtgcagaagg
      421 actaaagata aacgttttct tcacgccttt acacggcctg tccttctcaa atcgccattt
      481 tgccatcgcc t
//
LOCUS       DAJVUY010000399          483 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.407, whole genome shotgun sequence.
ACCESSION   DAJVUY010000399 DAJVUY010000000
VERSION     DAJVUY010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.407"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>483
                     /locus_tag="OQQ72_004411"
     CDS             <1..>483
                     /locus_tag="OQQ72_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS2013874.1"
                     /translation="YYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELA
                     ENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVW
                     VADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGL
                     "
BASE COUNT          134 a          124 c          135 g           90 t
ORIGIN      
        1 gttattacaa ctgggtacag catgaaccct cagacagaaa acaaagtgat gagcggctaa
       61 aactggagat taaggtggca catatccgca ctcgcgaaac atatggaacc cggcggctcc
      121 agacggagct ggcagagaat ggcatcatcg ttggtcgtga ccgactggca cgtcttcgta
      181 aggagctaag gctacgctgt aagcagaaac gcaagttcag agcgactacg aacccgaacc
      241 acaatctgcc agttgcgcca aatctgctga accagacgtt cgctcctaca gcaccaaatc
      301 aggtctgggt ggcggacctg acgtatgttg ccacacagga gggatggttg tacctcgctg
      361 gcatcaaaga tgtttatacg tgcgaaattg tcggctacgc catgggagag cgcatgacaa
      421 aagagctgac aggtaaagcc ctgtttatgg cgctcaggag ccagcgccca cctgccgggc
      481 taa
//
LOCUS       DAJVUY010000400          476 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.408, whole genome shotgun sequence.
ACCESSION   DAJVUY010000400 DAJVUY010000000
VERSION     DAJVUY010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.408"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>476
                     /locus_tag="OQQ72_004412"
     CDS             <1..>476
                     /locus_tag="OQQ72_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase zinc-binding domain-containing
                     protein"
                     /protein_id="HCS2013875.1"
                     /translation="LACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATD
                     LWIATQLNRLPDCDWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQE
                     PGIFCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQL"
BASE COUNT          102 a          129 c          146 g           99 t
ORIGIN      
        1 tgctggcctg cggcacgcgg atactgggag tgaaggaata catctgcgat aaacctgagt
       61 gcccccacgt cagatacgtc actaactcat gcggcagccg tgcctgcccg tcctgcggaa
      121 aaaaggccac agacctgtgg atagcgacac agctgaatcg tcttcctgac tgcgactggg
      181 tacacctggt cttcaccctg ccggacacgc tgtggccggt gttcgaaagc aaccggtggc
      241 tgctgaatga cgtgtgccgt ctggcggtgg agaatctgct gtatgccgcc cggaaacggg
      301 ggcaggaacc cggtatcttc tgcgccatcc acacgtatgg ccgtcgtctc aactggcatc
      361 cgcatgtaca tgtgtctgta acctgtggag gtctgaataa gcatggtcag tggaaaaagc
      421 tgagcttcct gaaagacgcg atgcgttcac ggtggatgtg gaatatgcgg cagctg
//
LOCUS       DAJVUY010000401          467 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.409, whole genome shotgun sequence.
ACCESSION   DAJVUY010000401 DAJVUY010000000
VERSION     DAJVUY010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.409"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            108..467
                     /locus_tag="OQQ72_004413"
                     /pseudo
     CDS             108..467
                     /locus_tag="OQQ72_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          121 a          115 c          110 g          121 t
ORIGIN      
        1 ttttaacgta aggtgagagg atttttaagt gtatccatag attaaaaatg acaatgcctc
       61 caattagttg aattaggggt tataataccc gcttttaagg ttctttcatg gtcacagtta
      121 actttcattg cccccgttgc cagtccgttc aggtttaccg tcacgggcag aacccaaaag
      181 gacatgatcg attccgttgc cgtgactgtc accgggtgtt tcagctcact tactgttacg
      241 aggcccgtaa accgggagtt aaaaaccaaa tcactgaaat ggcttcaacg gtgccggagt
      301 tcgcgatact gcccgtacgc tgaaaatcgg catcaatacc gtcatacgga cattaaaaag
      361 ctcccgcccc ggcggataac atctgcgcca gtcgctcacg ctgatgttgc ccttatctgt
      421 gaacttgatg ggcagtggag cttcgttggc agcaaggcgc aacaaca
//
LOCUS       DAJVUY010000402          466 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.410, whole genome shotgun sequence.
ACCESSION   DAJVUY010000402 DAJVUY010000000
VERSION     DAJVUY010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.410"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>466)
                     /locus_tag="OQQ72_004414"
     CDS             complement(<1..>466)
                     /locus_tag="OQQ72_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004141771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS2013876.1"
                     /translation="SVDYNIEGFGFVGAYSKSDRTNEQAGDGYGDNAEVWSLAAKYDA
                     NNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYA
                     RDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQ"
BASE COUNT          130 a          103 c           90 g          143 t
ORIGIN      
        1 actggtcatc agttgcggca tcggtaatcg ctgcatcgtc tttatccagc aggttaaatt
       61 tgtatgctgt gtagacgttc atgttcttat tgaagtagta ccaggtacca acttcgatat
      121 aatttacgcg gtcagcatca acacctttat gtccatcacg agcataaaga tctttgcctt
      181 tggaatatac gtagcctaaa gacggacgta aaccgaagtc gaactgatac tgtacaacag
      241 cttcaaagtt ttgggtttta tttgcaaaat gatcattagc caaaacggtc atgttgcggg
      301 tttcaccgta catcattgct gcatagatat tatttgcatc atacttggct gctaatgacc
      361 acacttcagc gttatcaccg tagccgtcac cagcttgttc attagtacga tcagatttgc
      421 tatatgcacc tacaaaacca aaaccttcga tgttgtagtc tacaga
//
LOCUS       DAJVUY010000403          452 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.411, whole genome shotgun sequence.
ACCESSION   DAJVUY010000403 DAJVUY010000000
VERSION     DAJVUY010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.411"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..440
                     /locus_tag="OQQ72_004415"
     CDS             <1..440
                     /locus_tag="OQQ72_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000291745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013877.1"
                     /translation="HGWNATEFSWFRYGQYNETGIYISIEKTIIITITVSGGCFKKEY
                     SIVSHMLVTDTITEATLYENGLYTRHIRLSRPVSDSKYPLPPGSQLIKNMTLRLRLQD
                     QQEETSVTLFQGKMSTDGNNYYIIKGKVSSVLLLLKMLQINHA"
BASE COUNT          141 a          112 c           92 g          107 t
ORIGIN      
        1 agcatggctg gaatgcaact gagttctcat ggttccgata cggacagtat aacgaaacgg
       61 gtatttacat ctcgatcgag aagaccatta tcattacaat caccgtttct ggtgggtgct
      121 ttaaaaaaga atacagcatt gtctcccaca tgctggtcac tgacaccata acagaggcca
      181 ccctgtacga aaacgggctg tatacgcgcc acatcagact cagtcgccca gtatctgaca
      241 gcaaataccc cttgccaccc ggatctcagc tcattaaaaa tatgacctta cgactgcgcc
      301 tgcaggatca gcaggaagaa acatccgtga cattatttca gggaaaaatg agtaccgacg
      361 gaaataacta ttacatcatc aaaggtaaag taagctcagt acttctgtta ttaaaaatgc
      421 tgcagattaa tcacgcctga tctctgtccc gg
//
LOCUS       DAJVUY010000404          447 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.412, whole genome shotgun sequence.
ACCESSION   DAJVUY010000404 DAJVUY010000000
VERSION     DAJVUY010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.412"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..182)
                     /locus_tag="OQQ72_004416"
     CDS             complement(<1..182)
                     /locus_tag="OQQ72_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HCS2013878.1"
                     /translation="MTETESAILAHARRCAPAESCGFVVRAPEGERYFPCVNISGEPE
                     DYFRMAPEDWLQAEMQG"
     gene            complement(187..>447)
                     /locus_tag="OQQ72_004417"
     CDS             complement(187..>447)
                     /locus_tag="OQQ72_004417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS2013879.1"
                     /translation="SASFVLSTPTETDGAVFPGRIMLANTCTWTYRGDECGYHGPAVA
                     DEYDQPTSDITKDKCSKCLSGCKFRNNVGNFGGFLSINKLSQ"
BASE COUNT           98 a          138 c          114 g           97 t
ORIGIN      
        1 ccctgcatct ctgcctgcag ccagtcctcc ggagccatcc ggaaataatc ctccggctca
       61 ccggaaatat tcacgcaggg aaaatatctt tccccctccg gcgctctcac cacgaagccg
      121 cacgactccg ctggcgcaca tcgccgggcg tgcgccagaa tcgctgattc tgtctctgtc
      181 atgggattac tgcgaaagtt tgttaatgga aaggaagccg ccaaagttgc cgacgttatt
      241 gcgaaactta cagccgctca ggcatttgct gcatttatcc ttcgtgatat cggacgtcgg
      301 ctggtcatat tcatccgcga ctgccggacc gtgataaccg cactcatcac cgcgataggt
      361 ccaggtgcag gtgttggcca gcatgatacg tcccggaaaa acagcgccat ccgtttccgt
      421 cggcgtggac agtacaaagg aggcact
//
LOCUS       DAJVUY010000405          443 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.413, whole genome shotgun sequence.
ACCESSION   DAJVUY010000405 DAJVUY010000000
VERSION     DAJVUY010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.413"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
BASE COUNT          168 a           75 c           88 g          112 t
ORIGIN      
        1 aggaaacccg gggcggttca aggactctat catcgccaat catcagacat tgaaatagac
       61 gacactgaga tgacgcttac aattcttttg gtttctgtaa taagtaatct gacatccccc
      121 gtgcccagaa gaggagaggg atatcaagcc caagggttaa taattgatac tacggttaaa
      181 attgccttca gtaaaggaaa cgtgattaaa ttcaggggat ttcagagtga aaaccataca
      241 acatattaaa atctgttcat ttagctataa tacatacaag aaagtgtcca gttagataat
      301 gttatctaaa taaccacaga taaaaacgca cataattggg ggggggatga aaatacctga
      361 agcagtaaat catattaatg ttcagaataa tattgatctt gttgatggaa aaacgaatcc
      421 gaataaagca acaaaagcat tac
//
LOCUS       DAJVUY010000406          438 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.414, whole genome shotgun sequence.
ACCESSION   DAJVUY010000406 DAJVUY010000000
VERSION     DAJVUY010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.414"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..332)
                     /locus_tag="OQQ72_004418"
     CDS             complement(<1..332)
                     /locus_tag="OQQ72_004418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HCS2013880.1"
                     /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL
                     LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY
                     LPFLFLPE"
BASE COUNT          139 a           95 c          104 g          100 t
ORIGIN      
        1 ctttccggta aaaataaaaa cggtaaatag agcgcaatat cggaaataac atcgccagtt
       61 tcattcaaaa tcgcccccag acgtgtttgc tgattgcact cacgcgccaa catgccatcc
      121 agcgcattga gcgccatacg gataaaaagc acgatgggca atagcaaaaa gaggatgggt
      181 tgtgccacca acaccaacag caatccggta aaaagagaaa gcgccagtgc cgtaagagtg
      241 atgtgattcg ctgtaacgtg gtgcttataa agccaaaaca tcgtcggcct taacagcgac
      301 tgaaagagcg gttttatctg gtagagcgtc atttatcatt ccgtgatatt cagtttgctc
      361 tatggtgcat caattgtgat ggcggagata tcacaacgcg gagcatcaac gtaaattcgg
      421 aatatatcaa gatgtggt
//
LOCUS       DAJVUY010000407          433 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.415, whole genome shotgun sequence.
ACCESSION   DAJVUY010000407 DAJVUY010000000
VERSION     DAJVUY010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.415"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>433
                     /locus_tag="OQQ72_004419"
     CDS             <1..>433
                     /locus_tag="OQQ72_004419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS2013881.1"
                     /translation="MPLLDKLRKLYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARA
                     QRDDWLKKEILRVYDGNHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGK
                     KVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQG"
     misc_feature    <1..74
                     /locus_tag="OQQ72_004419"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01497"
BASE COUNT          101 a          105 c          134 g           93 t
ORIGIN      
        1 tgatgccact gctggataag ctgcgtaagc tgtacggggt cggaccggta tgcagtgaac
       61 tacatattgc cccgtcaacg tattaccact gtcagcaaca gcgacatcat cctgataaac
      121 gcagtgcccg tgcgcagcgc gatgactggc tgaagaaaga gatactgcgc gtatacgatg
      181 ggaatcatca ggtatacggt gtgcgtaaag tctggcgtca gttgttacgg gaaggtatca
      241 gagtggccag atgcactgtg gcacgtctca tggcggttat gggacttgcc ggtgttctcc
      301 ggggtaaaaa ggtccgtacg accatcagcc ggaaagccgt tgccgcaggc gaccgcgtaa
      361 accgtcagtt cgtggcagaa cgacctgacc agctgtgggt ggctgatttt acttacgtca
      421 gcacatggca ggg
//
LOCUS       DAJVUY010000408          431 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.416, whole genome shotgun sequence.
ACCESSION   DAJVUY010000408 DAJVUY010000000
VERSION     DAJVUY010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.416"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(136..303)
                     /locus_tag="OQQ72_004420"
                     /pseudo
     CDS             complement(136..303)
                     /locus_tag="OQQ72_004420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013317439.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          113 a          107 c          108 g          103 t
ORIGIN      
        1 caaaatgagt cagggaaaac gacacaatca ggcgcttatc gccctggcga gacgacgctg
       61 cgacgttctg ttcgccatga tgcgcgacgg gactttttat accccgcagg ggtcataaca
      121 tgcttgacaa cttaataggg gcaccccctc atgcctgagc atcgcatgca ggcgacgata
      181 gccataacac tggtaattac tgttaaagat atctgtcagc atcttacgta tcgtggcgta
      241 tttatcaccg gctttcagtg cagcccggtg ataaaaataa ctgctacggg caaggcccag
      301 aactgaggtg tactggcaat agcggacacc accatttgtt ctttttctaa gcagtcatct
      361 gataatattt tatcctgaag gctgccgggg agatattccc cagacgagag tgacgacgct
      421 gacgattgta g
//
LOCUS       DAJVUY010000409          410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.417, whole genome shotgun sequence.
ACCESSION   DAJVUY010000409 DAJVUY010000000
VERSION     DAJVUY010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.417"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            46..410
                     /locus_tag="OQQ72_004421"
                     /pseudo
     CDS             46..410
                     /locus_tag="OQQ72_004421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          112 a           88 c          103 g          107 t
ORIGIN      
        1 tactgcaccc attttgttgg acgatgaaat ggaatagccc ctaatatgtc aaagccaaaa
       61 tacccttttg aaaagcgcct tgaagtcgtg aatcactact tcactactga tgatggttac
      121 aggatcatct cggcacgttt tggtgtcccc gaacccaggt caggacatgg gttgccctct
      181 atgaaaaaca tggagaaaaa ggcttaattc ccaaacctaa aggtgttagt gctgatccag
      241 agttgcgtat taaggtcgtg aaagctgtga ttgagcagca catgtccctt aatcaggctg
      301 ctgctcactt tatgcttgct ggtagtggtt ctgtagccag gtggctgaag gtttatgaag
      361 agcgcggaga agctggttta cgcgcgctca agattggcac caaaagaaac
//
LOCUS       DAJVUY010000410          385 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.418, whole genome shotgun sequence.
ACCESSION   DAJVUY010000410 DAJVUY010000000
VERSION     DAJVUY010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.418"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            187..342
                     /locus_tag="OQQ72_004422"
                     /pseudo
     CDS             187..342
                     /locus_tag="OQQ72_004422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          122 a           83 c           98 g           82 t
ORIGIN      
        1 acagagagca gaacgggatc tatacttttg cgggtcaaca taagaggatg agtccttaat
       61 aaaacaggtc ctcagagaat acatattctg cggagcgtgc ggcaacaaca ggacgaacag
      121 gggcggtttt caatttgcag ccgtcaggct gccgtggttc actccaacaa cggagacagg
      181 taaattatgg acgaaaagaa gcttaaagcc cttgcggctg aactggctaa aggcctcaaa
      241 accgaggccg acctcaatca gttttcccgt atgcagacga aattaactgt cgaaacggtg
      301 cttaatgagg aactaactga ccatctcggg catgaaaaaa gctacatccg gtagtaaaca
      361 ttatcagtgg gttatgcgat atgat
//
LOCUS       DAJVUY010000411          373 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.419, whole genome shotgun sequence.
ACCESSION   DAJVUY010000411 DAJVUY010000000
VERSION     DAJVUY010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.419"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(41..373)
                     /locus_tag="OQQ72_004423"
                     /pseudo
     CDS             complement(41..373)
                     /locus_tag="OQQ72_004423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414844.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          100 a           77 c           66 g          130 t
ORIGIN      
        1 tcaccatcat acactaaatc agtaagttgg cagcattacc aggtatttgt atctcatcga
       61 gaacttgcct gccattatgg tattctgacg cataccattt gataatagac gcctgcacgc
      121 gagatatttc cgcttcagca gttggtaaat ctctcttatc tcctgaccat tccagcttta
      181 tttctctgtt cttgacatct gggctggtgt gaaaaaatgt agtaattcgc tgtataacat
      241 cttcagtcat tgtggtctga caggcaaaat tattattgct atcacagcta acaagtatac
      301 ctggcgttgt ctggtttatt tttaggctgt aaatcacttt tatattgtct ttattgatat
      361 acagaaacaa cag
//
LOCUS       DAJVUY010000412          369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.420, whole genome shotgun sequence.
ACCESSION   DAJVUY010000412 DAJVUY010000000
VERSION     DAJVUY010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.420"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>369)
                     /gene="bluF"
                     /locus_tag="OQQ72_004424"
     CDS             complement(<1..>369)
                     /gene="bluF"
                     /locus_tag="OQQ72_004424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HCS2013882.1"
                     /translation="PEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFA
                     GLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEW
                     MWLESAGIEMFQGDLFAKAK"
BASE COUNT          107 a           91 c           66 g          105 t
ORIGIN      
        1 aatttagctt tagcaaacag atctccctga aacatctcaa ttcctgcgga ttcaagccac
       61 atccactctt ctggtgttgc cacgcccata gcactgactt gaatttcaag tgatgtacag
      121 cattttatga tcgcctgaat aattgcctgc cgtggcccac ttttatgaac attggtaatc
      181 aattcctgac tgattttaat tctgtcaggc tggaagcgtg acaggagtaa caaaccagca
      241 aaacctgcgc caaaatgatc aattgctaca ctgataccag cagcctttag cgatttaatc
      301 gcttcggcaa actcatcaaa ccgagatatg acttcacttt cagtaaattc aacgatgatt
      361 tgttcaggc
//
LOCUS       DAJVUY010000413          366 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.421, whole genome shotgun sequence.
ACCESSION   DAJVUY010000413 DAJVUY010000000
VERSION     DAJVUY010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.421"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..102
                     /locus_tag="OQQ72_004425"
     CDS             <1..102
                     /locus_tag="OQQ72_004425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS2013883.1"
                     /translation="IYAKSLQAMDFSVITDKTSYNAIEWPASPEISS"
     gene            126..>366
                     /locus_tag="OQQ72_004426"
     CDS             126..>366
                     /locus_tag="OQQ72_004426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS2013884.1"
                     /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMHTVADVMTG
                     NDGEYCFHARTGKYGVYLKPGWHNEYNVGDIAVYED"
BASE COUNT           98 a           80 c           92 g           96 t
ORIGIN      
        1 atttacgcga aatcgctgca ggcgatggat ttcagtgtca tcactgataa aacctcatac
       61 aacgccattg aatggcccgc ctctccggaa atttcttcct gatttaattt atcgcgagaa
      121 aaactatgtc tgtagtgata tcaggtgcgc tgactgatgg cgcaggtatc cccatgtccg
      181 gataccatat tattctgaaa tcccgggtaa acaccccgga agtggtgatg cacactgttg
      241 ctgatgtgat gacaggaaac gatggtgaat actgtttcca tgcgcggact ggaaaatatg
      301 gtgtgtatct gaaaccgggc tggcacaacg agtacaacgt tggcgacatt gctgtatatg
      361 aggact
//
LOCUS       DAJVUY010000414          366 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.422, whole genome shotgun sequence.
ACCESSION   DAJVUY010000414 DAJVUY010000000
VERSION     DAJVUY010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.422"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>366
                     /locus_tag="OQQ72_004427"
     CDS             <1..>366
                     /locus_tag="OQQ72_004427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013885.1"
                     /translation="RAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGL
                     KSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEY
                     SVAGPYDIIIPDTRFEGVL"
BASE COUNT           95 a           94 c          103 g           74 t
ORIGIN      
        1 cccgcgcagc agaacaggcc aaaaatgaca ttgatgctgc gctgaccggc actctgaaaa
       61 tggctaacca tctgtcagaa atcgcagcag caggcgaaaa ggcacaacag aagtcccggg
      121 ataatctggg gctgaaaagt gcggccacga tggaagcaca gagcgacatt tacgaccgga
      181 caaaaggccg tctggcgata cccggcgcat tcggctttgg gtgtgctttt ctgcctgaag
      241 atgttatccg ttttgacact aagagtgatt tcctggcctg ggtaaggaat gcgctgccag
      301 gtgaatattc cgttgctggc ccctacgaca tcatcatacc cgacacacgg tttgaagggg
      361 tgctca
//
LOCUS       DAJVUY010000415          365 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.423, whole genome shotgun sequence.
ACCESSION   DAJVUY010000415 DAJVUY010000000
VERSION     DAJVUY010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.423"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..355)
                     /locus_tag="OQQ72_004428"
     CDS             complement(<1..355)
                     /locus_tag="OQQ72_004428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS2013886.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKQARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIK"
BASE COUNT           89 a           82 c           90 g          104 t
ORIGIN      
        1 gcttaatttt gctttcacat ttttgtaagt cttctgccgg attgtgcgac gtctgcaata
       61 tcacgtcgaa accttcctct tcagctttgg cggtgatggc atgcaaaact tcagagaaaa
      121 acggattacc cgccgtagtt ttggtcgaac gggtagaaat caccataatg gcatcaaaac
      181 ccgaagaggt cagcgcgcgg gcctgcttgt ttggctgata ctgtaattct tcaatggccc
      241 gtaacacttt ttcgcgcgct tccggggaga tattagtttg cttattcagc acgcgtgata
      301 cggtggattt tgatacgcct gcaaccctgg caatatcata aatagtaggg gacataggtc
      361 aggaa
//
LOCUS       DAJVUY010000416          364 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.424, whole genome shotgun sequence.
ACCESSION   DAJVUY010000416 DAJVUY010000000
VERSION     DAJVUY010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.424"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            84..>364
                     /locus_tag="OQQ72_004429"
     CDS             84..>364
                     /locus_tag="OQQ72_004429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS2013887.1"
                     /translation="MEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCGMFVRFRN
                     AGLSWPLPAGMSEQELDALLYGSASTVPVVLTESTVMPKLPVVKKRPRRP"
BASE COUNT           81 a          104 c           85 g           94 t
ORIGIN      
        1 taaccggctc atttaaaccg tctggtctgt ttcctccggc tccacaaaaa taatgtccat
       61 cattttgaag tggacactat cgtatggaat accggacctg gatcactgaa gctttacgcc
      121 ttcatttcga agaacattta ccacgggttg tggccggacg tcgcctgggc gtaccaaaat
      181 caactgtctg tggtatgttc gtgcgcttcc gcaacgctgg cctttcatgg cctctgcccg
      241 caggtatgtc ggagcaggaa cttgatgccc ttctttacgg aagtgcctcc acagtacctg
      301 tcgtacttac tgaaagcacc gttatgccca aactcccggt ggtaaaaaaa cgtccccggc
      361 ggcc
//
LOCUS       DAJVUY010000417          364 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.425, whole genome shotgun sequence.
ACCESSION   DAJVUY010000417 DAJVUY010000000
VERSION     DAJVUY010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.425"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            61..>364
                     /gene="iraM"
                     /locus_tag="OQQ72_004430"
     CDS             61..>364
                     /gene="iraM"
                     /locus_tag="OQQ72_004430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS2013888.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQI"
BASE COUNT          137 a           71 c           52 g          104 t
ORIGIN      
        1 tcaaaaatat catttatact tttcagaaca tcaccagcaa ggcataaaca aggaaactaa
       61 atgaagtgga ttgtgattga tacagttatc cagccatcat gcggaatatc tttttcagtc
      121 atatggagta aaataaaatt aataatctgg tatcaatcgg atgctttctt acctcctgaa
      181 agtatattta cactgactca cacaggcatc atgctcaata acaaagtgct acctgtaacc
      241 atttacaacg tagtaccatt caataaaaca ttctggaatt taatcaaaaa cagccaggaa
      301 tgccctacaa atacagataa cgtattgaat gaatgcttta ataaccgttg cactctgcaa
      361 atat
//
LOCUS       DAJVUY010000418          362 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.426, whole genome shotgun sequence.
ACCESSION   DAJVUY010000418 DAJVUY010000000
VERSION     DAJVUY010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.426"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>362)
                     /gene="ospC4"
                     /locus_tag="OQQ72_004431"
     CDS             complement(<1..>362)
                     /gene="ospC4"
                     /locus_tag="OQQ72_004431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS2013889.1"
                     /translation="HYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNIL
                     NIKSFDKIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFG
                     ANAYIIDHDSPYGYMTLT"
BASE COUNT          123 a           39 c           68 g          132 t
ORIGIN      
        1 tcggttaatg tcatatatcc atatggagag tcatgatcaa tgatatacgc attggcgcca
       61 aaatctacag tatgatgtgt tttatttagc gggagttttt cttgatgatt ggaaatttca
      121 accccaaaaa aaacaaaatc gtggttagag atttctttaa tatcctcaga gtatgtattc
      181 ttatgtgttt gtatattttc agactgaatt ttatcaaagg atttaatatt aagaatatta
      241 tttgacagat tagagttact ttgatgtctg aagttaaaat tagaattaat aataatagaa
      301 agtaagtgac gttcgtctga agaaagagga tgaacttttt gtattatctc agagatatag
      361 tg
//
LOCUS       DAJVUY010000419          361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.427, whole genome shotgun sequence.
ACCESSION   DAJVUY010000419 DAJVUY010000000
VERSION     DAJVUY010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.427"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>361
                     /locus_tag="OQQ72_004432"
     CDS             <1..>361
                     /locus_tag="OQQ72_004432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HCS2013890.1"
                     /translation="KQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHL
                     KGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPR
                     VVKERPWKYPTAPKKSQS"
BASE COUNT          108 a           71 c          111 g           71 t
ORIGIN      
        1 aaacagacga tgcaactgag caggctgacg ctgagaagta aaaagccgga gcttgtggag
       61 caagagctgt ggggtgtctt actggcttat aatctggtga gatatcagat gattaaaatg
      121 gcggaacatc tgaaaggtta ctggccgaat caactgagtt tctcagaatc atgcggaatg
      181 gtgatgagaa tgctgatgac attgcagggc gcttcaccgg gacgtatacc ggagctgatg
      241 cgcgatcttg caagtatggg acaacttgtg aaattaccga cgagaagggg aagggccttc
      301 ccgagagtgg taaaggagag gccctggaaa taccccacag ccccgaaaaa gagccagtca
      361 g
//
LOCUS       DAJVUY010000420          360 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.428, whole genome shotgun sequence.
ACCESSION   DAJVUY010000420 DAJVUY010000000
VERSION     DAJVUY010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.428"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>360)
                     /locus_tag="OQQ72_004433"
     CDS             complement(<1..>360)
                     /locus_tag="OQQ72_004433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS2013891.1"
                     /translation="ENWALGVGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNI
                     PLWDDATLSLMAKYSAPNKTDQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFT
                     LQVANNSYASSFASFSDA"
BASE COUNT          110 a           76 c           70 g          104 t
ORIGIN      
        1 ggcatctgag aaactggcaa aactgctggc ataggaatta ttggcaacct gtaacgtaaa
       61 ttcattaaac gtatcgcgtt gcaggttttg ccgtaaaaca gaagtcagca tccagctatc
      121 tttcatttca aaataactgt tgtcattttc gttatcttgt tgttgatccg ttttattagg
      181 tgcggaatat ttagccatta atgataatgt cgcatcatcc cataacggga tattgcgata
      241 acgaacatcc acagaattgg tattcatctg gctggtacgc gaaaaatcac gagagtaaac
      301 atcgacatca tcacggctta aggacatatc aaacagccct acaccaagtg cccagttttc
//
LOCUS       DAJVUY010000421          355 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.429, whole genome shotgun sequence.
ACCESSION   DAJVUY010000421 DAJVUY010000000
VERSION     DAJVUY010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.429"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..273
                     /locus_tag="OQQ72_004434"
     CDS             <1..273
                     /locus_tag="OQQ72_004434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416324.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1889 family protein"
                     /protein_id="HCS2013892.1"
                     /translation="DFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARA
                     DQEGWNPGFTEKMVGWAKKMEFGERTVIKNPEYFSTYMQEELKALV"
BASE COUNT          121 a           64 c           81 g           89 t
ORIGIN      
        1 gatttcattg gtgccatgga tgtatcagcg ccaacaccaa gttcgatgaa tgaaagcaca
       61 gcgaagggaa tctttaaata tttaaaagaa ctgggagtac ccgcgagtgc cgctgatatt
      121 acggcgcgag ctgaccagga aggctggaac cctgggttca cggaaaaaat ggttggatgg
      181 gcaaaaaaaa tggagtttgg tgaacgcact gtaattaaaa atcctgaata cttttcaaca
      241 tatatgcagg aagaactaaa agcactggtc tgagtttaat ttatatcagc ataaatgggt
      301 caggacgctt ttaatcacat ataaaaagcg tcctttttct cacaatcaaa taatc
//
LOCUS       DAJVUY010000422          349 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.430, whole genome shotgun sequence.
ACCESSION   DAJVUY010000422 DAJVUY010000000
VERSION     DAJVUY010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.430"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..288
                     /locus_tag="OQQ72_004435"
     CDS             <1..288
                     /locus_tag="OQQ72_004435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310581.1"
                     /note="3'-5' exonuclease activity on single or
                     double-strand DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS2013893.1"
                     /translation="QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS
                     LMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLENT"
BASE COUNT           83 a          100 c           88 g           78 t
ORIGIN      
        1 cagacaccgc cgggcctgca tcatcaccgc gcgttgtatg actgttatat caccgccgcg
       61 ttgcttatcg atattatgaa cacctccggc tggacggcag aacagatggc cgatatcacc
      121 ggacgtccgt cgttgatgac gaccttcacc tttggcaaat accgtggcaa agcggtttcc
      181 gacgttgccg aacgcgatcc gggctatctg cgctggtcat ttaataacct ggacagcatg
      241 agcccggagc tgcgtttaac actgaaacat tatctggaaa atacttaatc cgcaggcgta
      301 gcgggtaatg ttccctgcgc cagcgcgacc agaaaagcat attccatcg
//
LOCUS       DAJVUY010000423          329 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.431, whole genome shotgun sequence.
ACCESSION   DAJVUY010000423 DAJVUY010000000
VERSION     DAJVUY010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.431"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>329
                     /locus_tag="OQQ72_004436"
     CDS             <1..>329
                     /locus_tag="OQQ72_004436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013894.1"
                     /translation="RHINHPFALTLLIRVAGQTKRCHDRMTKAIAAFPHAAMAALTEL
                     LGQKEENSWRIMLMTMLISQPALAEQVLPWLSTPAVAVLKSYQQQLTQPSNHACADLL
                     PAVLVSP"
BASE COUNT           88 a           99 c           71 g           71 t
ORIGIN      
        1 tgcgtcatat caatcatccg ttcgcattga cactgcttat acgtgtagcc gggcaaacta
       61 aacgctgtca cgatcggatg acgaaagcca ttgctgcgtt cccacatgca gcaatggcgg
      121 cactgacgga acttcttggg caaaaagaag agaacagttg gcgcattatg ctaatgacaa
      181 tgcttatctc acaaccagca ctggcagaac aggtccttcc ctggctctcg acacccgcag
      241 ttgccgtact gaaatcatac cagcaacaac tgacacagcc ctcaaaccat gcctgcgccg
      301 atctactgcc tgccgtatta gtctcaccg
//
LOCUS       DAJVUY010000424          326 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.432, whole genome shotgun sequence.
ACCESSION   DAJVUY010000424 DAJVUY010000000
VERSION     DAJVUY010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.432"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>326
                     /locus_tag="OQQ72_004437"
     CDS             <1..>326
                     /locus_tag="OQQ72_004437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS2013895.1"
                     /translation="EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML
                     GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMD
                     PKRMIEA"
BASE COUNT           74 a           85 c           97 g           70 t
ORIGIN      
        1 gaatatccgc aatccgcagc catcgacctg cgttgcgtaa atatggttgc cgatctgtgg
       61 catgcgcctg cgccgaaaaa tggtcaggcc gttggcacca acaccattgg ttcttccgag
      121 gcctgtatgc tcggcgggat ggcgatgaaa tggcgttggc gcaagcgtat ggaagctgca
      181 ggcaaaccaa cggataaacc aaacctggtg tgcggtccgg tacaaatctg ctggcataaa
      241 ttcgcccgct actgggatgt ggagctgcgt gagatcccta tgcgccccgg tcagttgttt
      301 atggacccga aacgcatgat tgaagc
//
LOCUS       DAJVUY010000425          320 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.433, whole genome shotgun sequence.
ACCESSION   DAJVUY010000425 DAJVUY010000000
VERSION     DAJVUY010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.433"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..>320)
                     /locus_tag="OQQ72_004438"
     CDS             complement(<1..>320)
                     /locus_tag="OQQ72_004438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS2013896.1"
                     /translation="QDSRGGSLGRFGNEMSGWFDLTLNQRVYNQDGKTANAVVTYDGN
                     VGEQYNDAWFGDSANENIMQFSDIYLTTRGFLPFAPEADFWVGKHKLPQYEIQMLDWK
                     TLTT"
BASE COUNT           79 a           87 c           69 g           85 t
ORIGIN      
        1 ccgtggttaa ggttttccag tccagcatct ggatctcata ttgcgggagt ttatgtttgc
       61 cgacccagaa gtctgcctct ggtgcgaagg gtaaaaaacc tcgcgttgtc aggtaaatat
      121 cgctgaactg catgatattt tcattggcac tgtcaccaaa ccaggcatcg ttatactgct
      181 cacccacgtt gccatcatag gtaacgaccg catttgccgt tttaccgtcc tgattataaa
      241 cacgctgatt taaggtcagg tcaaaccaac cgctcatctc attaccaaaa cgtcccagtg
      301 aaccgccccg ggaatcctgg
//
LOCUS       DAJVUY010000426          320 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.434, whole genome shotgun sequence.
ACCESSION   DAJVUY010000426 DAJVUY010000000
VERSION     DAJVUY010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.434"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>320
                     /locus_tag="OQQ72_004439"
     CDS             <1..>320
                     /locus_tag="OQQ72_004439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS2013897.1"
                     /translation="ETVNRAGNAVQKNGDTLSGGLTFENDSILAWIRNTDWAKIGFKN
                     DADGDTDSYMWFETGDNGNEYFKWRSRQSTTTKDLMTLKWDALNILVNAVINGSLGVG
                     STNA"
BASE COUNT           99 a           59 c           83 g           79 t
ORIGIN      
        1 ggaaacggta aacagggctg gtaacgccgt gcaaaaaaat ggcgatacct tgtccggtgg
       61 gcttactttt gaaaatgact caatccttgc ctggattcga aatactgact gggcgaagat
      121 tggatttaaa aatgatgccg atggtgacac tgattcatac atgtggtttg aaacaggcga
      181 caacggcaat gaatatttca aatggagaag ccgccagagc accacaacaa aagacctgat
      241 gacgctgaaa tgggatgcac taaatattct tgttaatgct gtcattaatg gcagtcttgg
      301 agttggttcg acgaatgcgt
//
LOCUS       DAJVUY010000427          318 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.435, whole genome shotgun sequence.
ACCESSION   DAJVUY010000427 DAJVUY010000000
VERSION     DAJVUY010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.435"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>318
                     /locus_tag="OQQ72_004440"
     CDS             <1..>318
                     /locus_tag="OQQ72_004440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS2013898.1"
                     /translation="SFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQL
                     LWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYS
                     ALRP"
BASE COUNT           82 a           76 c           99 g           61 t
ORIGIN      
        1 gtcgttctcg ccggacagca ggctcaccat gaaagcgctg gaaatggcat gggaaacccg
       61 tggtaagccc ggcggggtga tgttccacag cgatcagggc agtcattata cgagcaggca
      121 gttccggcag ttattgtggc gataccagat cagacagagt atgagccggc gcggaaactg
      181 ctgggataac agcccaatgg aacgcttctt caggagtctg aagaacgaat ggatgccggt
      241 ggtgggttac gtaagcttca gcgaggcagc tcacgccata acggactata tcgttggata
      301 ttacagcgca ctaagacc
//
LOCUS       DAJVUY010000428          317 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.denovo.436, whole genome shotgun sequence.
ACCESSION   DAJVUY010000428 DAJVUY010000000
VERSION     DAJVUY010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.denovo.436"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            <1..>317
                     /locus_tag="OQQ72_004441"
     CDS             <1..>317
                     /locus_tag="OQQ72_004441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS2013899.1"
                     /translation="TITSGGNPPAFSLTPDGRLTAKNADISGNVNANSGTLNNVTINE
                     NCRVLGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPA
                     VAF"
BASE COUNT           76 a           87 c           90 g           64 t
ORIGIN      
        1 accattacca gcggcggtaa tcctccggca ttttccctga caccggacgg gcggctgacg
       61 gcgaaaaatg ccgatattag cggtaacgtg aatgcgaact ccgggacgct caacaacgtc
      121 acgattaacg agaactgtcg ggttctggga aaactgtccg ccaaccagat tgaaggcgat
      181 ctcgttaaaa cagtgggcaa agctttcccc cgggactccc gtgcaccgga gcggtggcca
      241 tcagggacca ttaccgtcag ggtttatgac gatcagccgt ttgaccggca aattgttatt
      301 ccggcggtgg cattcag
//
LOCUS       DAJVUY010000429         8555 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.168, whole genome shotgun sequence.
ACCESSION   DAJVUY010000429 DAJVUY010000000
VERSION     DAJVUY010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8555
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.168"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(<1..403)
                     /locus_tag="OQQ72_004442"
     CDS             complement(<1..403)
                     /locus_tag="OQQ72_004442"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="poxA; regulates pyruvate oxidase poxB; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P lysine(34) lysyltransferase"
                     /protein_id="HCS2013900.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDL"
     gene            728..2536
                     /gene="frdA"
                     /locus_tag="OQQ72_004443"
     CDS             728..2536
                     /gene="frdA"
                     /locus_tag="OQQ72_004443"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS2013901.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRMAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            2529..3263
                     /gene="frdB"
                     /locus_tag="OQQ72_004444"
     CDS             2529..3263
                     /gene="frdB"
                     /locus_tag="OQQ72_004444"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS2013902.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            3274..3669
                     /gene="frdC"
                     /locus_tag="OQQ72_004445"
     CDS             3274..3669
                     /gene="frdC"
                     /locus_tag="OQQ72_004445"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS2013903.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPDAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            3680..4039
                     /gene="frdD"
                     /locus_tag="OQQ72_004446"
     CDS             3680..4039
                     /gene="frdD"
                     /locus_tag="OQQ72_004446"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS2013904.1"
                     /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            4102..5235
                     /locus_tag="OQQ72_004447"
     CDS             4102..5235
                     /locus_tag="OQQ72_004447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS2013905.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            5324..5857
                     /gene="blc"
                     /locus_tag="OQQ72_004448"
     CDS             5324..5857
                     /gene="blc"
                     /locus_tag="OQQ72_004448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS2013906.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(5854..6171)
                     /gene="sugE"
                     /locus_tag="OQQ72_004449"
     CDS             complement(5854..6171)
                     /gene="sugE"
                     /locus_tag="OQQ72_004449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS2013907.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(6353..6499)
                     /gene="ecnB"
                     /locus_tag="OQQ72_004450"
     CDS             complement(6353..6499)
                     /gene="ecnB"
                     /locus_tag="OQQ72_004450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS2013908.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(6610..6735)
                     /gene="ecnA"
                     /locus_tag="OQQ72_004451"
     CDS             complement(6610..6735)
                     /gene="ecnA"
                     /locus_tag="OQQ72_004451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS2013909.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(6787..7353)
                     /gene="efp"
                     /locus_tag="OQQ72_004452"
     CDS             complement(6787..7353)
                     /gene="efp"
                     /locus_tag="OQQ72_004452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS2013910.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            7395..8444
                     /gene="epmB"
                     /locus_tag="OQQ72_004453"
     CDS             7395..8444
                     /gene="epmB"
                     /locus_tag="OQQ72_004453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS2013911.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
BASE COUNT         2140 a         2216 c         2234 g         1965 t
ORIGIN      
        1 agagatcgtc cacctcgttc atcaaccggt acatatcata gtgcggtcga taccactcaa
       61 gcatagtgaa ctcagggttg tgataacgcc ccatctcttc attacggaag ctgcggcaca
      121 gctggaatac cggcccacaa ccggcaacca gcaggcgttt catatggtat tccgggctgg
      181 tcattaacca gagattcatc ccctgcgaat gcccggggcc aacgaaacgt gtctcaaacg
      241 ggaccaaatg aatatcggtt accgtcgcct ggctcataca aggcgtctcc acctccagca
      301 ctccacgatc agcaaagaaa cgacggatct ccgccataat cgccgcgcgt tttaataagt
      361 taggaatgga tgcgctcggc tgccaggatg ccgtttcgct catagttaaa tctccagttt
      421 ttgacaaggg cacgaagtct actcgcaacg cgacggcgag acaaatttta cgcaggaatc
      481 aaacagcggt gggcagtgac taaaaaaagc acgatctgat ggtttagtaa ttaaattaat
      541 catcttcagt gataatttag ccctcttgcg cactaaaaaa atcgatctcg tcaaatttca
      601 gacttatcca tcagactata ctgttgtacc tataaaggag cagtggaata gcgttcgcag
      661 accgtaactt tcaggcactt accctgaagt acggggctgt gggataaaaa caatctggag
      721 gaatgtcgtg caaacctttc aagccgatct tgccattgta ggcgccggtg gcgcgggatt
      781 acgtgctgca attgctgccg cgcaggcaaa tccaaatgca aaaatcgcac taatctcaaa
      841 agtatacccg atgcgtagcc ataccgttgc tgcagaaggg ggctccgccg ctgtcgcgca
      901 ggatcatgac agcttcgaat atcactttca cgatacagta gcgggtggcg actggttgtg
      961 tgagcaggat gtcgtggatt atttcgtcca ccactgccca accgaaatga cccaactgga
     1021 actgtggggg tgcccatgga gccgtcgccc ggatggtagc gtcaacgtac gtcgcttcgg
     1081 cggcatgaaa atcgagcgca cctggttcgc cgccgataag accggcttcc atatgctgca
     1141 cacgctgttc cagacctctc tgcaattccc gcagatccag cgttttgacg aacatttcgt
     1201 gctggatatt ctggttgatg atggtcatgt tcgcggcctg gtagcaatga acatgatgga
     1261 aggcacgctg gtgcagatcc gtgctaacgc ggtcgttatg gctactggcg gtgcgggtcg
     1321 cgtttatcgt tacaacacca acggcggcat cgttaccggt gacggtatgg gtatggcgct
     1381 aagccacggc gttccgctgc gtgacatgga attcgttcag tatcacccaa ccggtctgcc
     1441 aggttccggt atcctgatga ccgaaggctg ccgtggtgaa ggcggtattc tggtcaacaa
     1501 aaatggctac cgttatctgc aagattacgg catgggcccg gaaactccgc tgggcgagcc
     1561 gaaaaacaaa tatatggaac tgggtccacg cgacaaagtt tctcaggcct tctggcacga
     1621 atggcgtaaa ggcaacacca tctccacgcc gcgtggcgat gtggtttatc tcgacttgcg
     1681 tcacctcggc gagaaaaaac tgcatgaacg tctgccgttc atctgcgaac tggcgaaagc
     1741 gtacgttggc gtcgatccgg ttaaagaacc gattccggta cgtccgaccg cacactacac
     1801 catgggcggt atcgaaaccg atcagaactg tgaaacccgc attaaaggtc tgttcgccgt
     1861 gggtgaatgt tcctctgttg gtctgcacgg tgcaaaccgt ctgggctcca actccctggc
     1921 ggaactggtg gtcttcggcc gtatggccgg tgaacaagcg acagagcgtg cagcaactgc
     1981 cggtaatggc aacgaagagg caattgaagc gcaggcagct ggcgttgaac aacgtctgaa
     2041 agatctggtt aaccaggatg gcggcgaaaa ctgggcgaag atccgcgacg aaatgggcct
     2101 agcaatggaa gaaggttgcg gtatctaccg tacgccggaa ctgatgcaga aaaccatcga
     2161 caagctggca gagctgcagg aacgcttcaa gcgcgtgcgc atcaccgaca cctccagcgt
     2221 gttcaacacc gacctgctct acaccattga actgggccac ggtctgaacg ttgctgaatg
     2281 tatggcgcac tccgcaatgg cacgtaaaga gtcccgcggc gcacaccagc gtctggacga
     2341 aggttgcacc gagcgtgacg acgtcaactt cctcaaacac accctcgcct tccgcgatgc
     2401 tgatggcacg actcgcctgg agtacagcga cgtgaagatt actacgctgc cgccagctaa
     2461 acgcgtttac ggtggcgaag cggatgcagc cgataaggcg gaagcagcca ataagaagga
     2521 gaaggcgaat ggctgagatg aaaaacctga aaattgaggt ggtgcgctat aacccggaag
     2581 tcgataccgc accgcatagc gcattctatg aagtgcctta tgacgcaact acctcattac
     2641 tggatgcgct gggctacatc aaagacaacc tggcaccgga cctgagttac cgctggtcct
     2701 gccgtatggc gatttgtggt tcctgcggca tgatggttaa caacgtgcca aaactggcat
     2761 gtaaaacctt cctgcgtgat tacaccgacg gtatgaaggt tgaagcgtta gctaacttcc
     2821 cgattgaacg cgatctggtg gtcgatatga cccacttcat cgaaagtctg gaagcgatca
     2881 aaccgtacat catcggcaac tcccgcaccg cggatcaggg tactaacatc cagaccccgg
     2941 cgcagatggc aaagtatcac cagttctccg gttgcatcaa ctgtggtctg tgctacgccg
     3001 cgtgcccgca gtttggcctg aacccagagt tcatcggtcc ggctgccatt acgctggcgc
     3061 atcgttataa cgaagatagc cgcgaccacg gtaagaagga gcgtatggcg cagttgaaca
     3121 gccagaacgg cgtatggagc tgtactttcg tgggctattg ctccgaagtc tgcccgaaac
     3181 acgtcgatcc ggctgcggcc attcagcagg gcaaagtaga aagttcgaaa gactttctta
     3241 tcgcgaccct gaaaccacgc taaggagtgc aacatgacga ctaaacgtaa accgtatgta
     3301 cggccaatga cgtccacctg gtggaaaaaa ttgccgtttt atcgctttta catgctgcgc
     3361 gaaggcacgg cggttccggc tgtgtggttc agcattgaac tgattttcgg gctgtttgcc
     3421 ctgaaaaatg gcccggacgc ctgggcggga ttcgtcgact ttttacaaaa cccggttatc
     3481 gtgatcatta acctgatcac tctggcggca gctctgctgc acaccaaaac ctggtttgaa
     3541 ctggcaccga aagcggccaa tatcattgta aaagacgaaa aaatgggacc agagccaatt
     3601 atcaaaagtc tctgggcggt aactgtggtt gccaccatcg taatcctgtt tgttgccctg
     3661 tactggtaag gagcctgaga tgattaatcc aaatccaaag cgttctgacg aaccggtatt
     3721 ctggggcctc ttcggggccg gtggtatgtg gagcgcaatt attgcgccgg tgatgatcct
     3781 gctggtgggt attctgctgc cactggggct gtttccgggt gatgcgctga gctacgagcg
     3841 cgttctggcg ttcgcgcaga gcttcattgg tcgcgtattc ctgttcctga tgatcgttct
     3901 gccgctgtgg tgtggtttac accgtatgca ccacgcgatg cacgatctga aaattcacgt
     3961 gcctgcgggc aaatgggttt tctacggtct ggctgctatc ctgacagttg tcacgctgat
     4021 tggtatcgtt acaatctaac gtatcgccaa tgtaaatccg gcccgcctat ggcgggccgt
     4081 tttgtatgga aaccagacct tatgttcaaa acgacgctct gcgccttatt aattaccgcc
     4141 tcttgctcca catttgctgc ccctcaacaa atcaacgata ttgtgcatcg cacaattacc
     4201 ccgcttatag agcaacaaaa gatccccggt atggcggtgg cggtaattta tcagggtaaa
     4261 ccttattact ttacctgggg ctatgcggac atcgccaaaa agcagcccgt cacacagcaa
     4321 acgttgtttg agttaggttc ggtcagcaaa acatttacgg gcgtgcttgg tggcgatgct
     4381 attgctcgag gggaaatcaa gttaagcgat cccgcaacaa aatactggcc tgaacttacc
     4441 gctaaacagt ggaatgggat cacactatta catcttgcga cctacaccgc tggcggcctg
     4501 ccattgcaga tgccggatga agtgaaatcc tcaagcgact tgctgcgctt ctatcaaaac
     4561 tggcagcctg catgggctcc aggaacacaa cgtctgtatg ccaactccag tatcggtttg
     4621 ttcggcgcac tggctgtgaa gccgtctggt ttgagttttg agcaggcgat gcaaactcgt
     4681 gtcttccagc cactcaaact caaccatacg tggattaatg taccgcccgc agaagaaaag
     4741 aattacgcct ggggatatcg cgaaggcaag gcagttcatg tttcgccagg ggcgttagat
     4801 gctgaagctt atggtgtgaa gtcgaccatt gaagatatgg cccgctgggt gcaaagcaat
     4861 ttaacccccc ttgatatcaa tgagaaaacg cttcaacaag ggatacaact ggcacaatct
     4921 cgctactggc aaaccggcga tatgtatcag ggcctgggct gggaaatgct ggactggccg
     4981 gtcaatcctg acagcatcat taacggcagt gacaataaaa ttgcactggc agcacgcccg
     5041 gtaaaagcga ttaagccccc aactcctgca gtacgcgcat catgggtaca taaaacgggg
     5101 gcgaccggcg gatttggtag ctatgtcgcg tttattccag aaaaagagct gggtatcgtg
     5161 atgctggcta acaaaaacta tcccaatcca gcgagagtcg ccgccgcctg tcagattctc
     5221 aacgctctac agtaaaattt catcgggtcc gaattttcgg accttttctg cgcttttcct
     5281 tgctgtcatc tacacttaga aaaaaaccag taaggaaaca tttatgcgcc tgctccctct
     5341 cgttgccgca gcgacagctg catttctggt cgttgcctgc agttctccta cgccgccgcg
     5401 tggcgtgaca gtagtgaata atttcgacgc taaacgctat ctcggtacct ggtatgagat
     5461 tgcccgtttt gatcaccgtt ttgaacgtgg actggaaaaa gtcaccgcaa catacagtct
     5521 gcgtgatggc ggcggcctga atgtcatcaa taaaggctat aaccctgaca gagaaatgtg
     5581 gcagcagagt gaagggaaag cgtactttac cggcgcacca acacgcgctg cgctgaaagt
     5641 gtcattcttt ggtcctttct atggcggtta taacgtcatt gcacttgatc gggaataccg
     5701 ccatgcgctg gtttgcggcc cggaccgcga ctacctgtgg atactctccc gcacgccaac
     5761 catttctgac gaagtgaaac aggagatgct ggcagtcgcg acccgggaag ggtttgatgt
     5821 cagtaagttt atttgggtac agcagcccgg tagttagtga gtgctgagtt tcagaccaat
     5881 aatccccaat acgattaacg ccagactcgc caggcgcatc gggttagcgg actcaccgag
     5941 cagcacaatg ccggtgatag ccgcgccgac tgcgccaata cccgtccaca cggcataagc
     6001 cgtccctact ggtaacgatt tcatcgccca ggcaagtagc gccatactga caatcatcgc
     6061 cgtcacggta ataacactcg gcgtcaaacg actaaagccg tgggtatatt tcaggccaac
     6121 ggcccatacc acttccagca gaccagcaat aactaagata atccaggaca tatcaggctc
     6181 cggagaattg gggccgtccc cggtgaaaag acgcgtttgc aggtcgtcct gcaaagctga
     6241 tggttgaacg gatattttgc caggtggcag gggaatttca actattacct tagtgactat
     6301 cgcagaaaaa acaaacggca cgacacagct gtcgtaccgt tattgcttat tgctattgct
     6361 gcgctttcgt tgctgcgcca gaaatcgcgt taccgccatc agaaatgtct tcaccaacgc
     6421 cacgcgtggt gttgcaggca gttaatactg ttgaaagcac cagaacagaa aagatcgctg
     6481 caattgtctt cttcaccata acgtcttcct tttaggtaat gttatttatg tttgcctata
     6541 gcaaattaat aatagacaac atcgccaaaa atgacggaaa tctgatgatt tttcggaaga
     6601 gaagaaaaat tagctggcag cgcgagagat ggagttgccg agatgtttga tgtcttcgcc
     6661 gaaaccgcga gcggtgttac agcccgtgag cagcgtactg gcaagcaaaa caagaacgat
     6721 aaggcgtttc atcatctctg acctgaataa gtgatggtgc agcctgcagg ccgcaccaca
     6781 accgcattac ttcacgcgag agacgtattc accagagcgg gtatccactt tgatgacttc
     6841 gccgatttgt acgaacagcg gaaccttaac cacagcgcca gtagacaggg tagccggttt
     6901 gccgccagta cctgcggtat cacctttcag gcccggatcg gtatcaacga tttccagttc
     6961 aacgaagttc ggcggagtaa cggagatcgg ctgaccattc cacagagtta cgatacactc
     7021 tgcctgatcc agcagccatt tagcgttatc gccaattgct tttgcatcag cagacagctg
     7081 ctcgaaagtt tcgttgttca tgaagtgcca gaactcaccg tcgttgtaca ggtaagtcag
     7141 gttcatatcg acaacatcag cgccttcagc ggaatcagta gatttgaagg ttttttctac
     7201 gcgagtaccg gtcagcagac gacgcagttt aacgcgagca aatgcctggc ctttacccgg
     7261 ttttacgaat tcactcgctt caaccgcgta aggttcgccg tctaacatga ttttaagacc
     7321 agcacgaaaa tcgttgctat agtacgttgc cataaggccc tctgaaattt gttaattggt
     7381 agctaagcca caaaatggcg catattgtaa ccctaaatac cccatccaga gaagattggt
     7441 taacgcaact tgccgatgtt gtgaccgatc ctgatgaact tctgcgtctt ttgaatatag
     7501 acgcggacga aaaactgttg gccggacgca gcgccaaaaa gctgtttgcc ctgcgtgtgc
     7561 cccgctcatt tatcgatcgc atggagaaag gcaatccgga cgatcctctt ttgcgtcagg
     7621 tacttacctc gcaagatgag tttgtcgtcg cgtccggatt ctccaccgac ccactggaag
     7681 aacagcacag cgtagtgcct ggtttgttgc ataaatacca caaccgggcg cttttgctgg
     7741 tcaaaggcgg ctgcgcggta aattgccgct attgcttccg tcgccacttc ccctatgccg
     7801 aaaatcaggg caacaagcgt aactggcaga ctgcacttga gtatgttgct gcgcatccgg
     7861 aactggacga gatgattttc tccggcggcg atccgctgat ggcgaaagat cacgagctgg
     7921 actggttgct cacacaactg gaagccatcc cgcatatcaa acgtctgcgg attcacagtc
     7981 gtctgccgat tgtgatcccg gcacgcatca cagatgcgct ggttgaacgc ttttcacatt
     8041 ctacgctgca aatcctgctg gtgaatcaca tcaaccatgc caatgagata gatgaaacat
     8101 tccgtcaggc gatggctaag ttgcgccggg taggcgttac tttgctgaac cagagcgttc
     8161 tgttacgtga tgtgaacgat aacgcacaaa cgctggcaaa cctgagtaat gcgttgttcg
     8221 atgccggcgt gatgccgtat tacctgcatg tgctcgataa agtacagggc gcagcgcatt
     8281 ttatggtgag tgatgacgaa gcacggcaga ttatgcgtga gttgctgaca ttggtgtcgg
     8341 gatatctggt gccgaaactg gcgcgagaaa ttggcggcga acccagcaaa acgccgctgg
     8401 atctccagct acgccagcag ttactgatta aacagggaag ttaaacatta aaattgcctg
     8461 atgcgctacg cttatcaggc ctacatcgtg cattgaaatt gaatggattt gcaatgaact
     8521 gtaggccgga taaggcgttt acgccgcatc cggca
//
LOCUS       DAJVUY010000430         4954 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.222, whole genome shotgun sequence.
ACCESSION   DAJVUY010000430 DAJVUY010000000
VERSION     DAJVUY010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.222"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(36..3041)
                     /locus_tag="OQQ72_004454"
     CDS             complement(36..3041)
                     /locus_tag="OQQ72_004454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS2013912.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            3205..3762
                     /locus_tag="OQQ72_004455"
     CDS             3205..3762
                     /locus_tag="OQQ72_004455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2013913.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            3945..4805
                     /locus_tag="OQQ72_004456"
     CDS             3945..4805
                     /locus_tag="OQQ72_004456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS2013914.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
BASE COUNT         1244 a         1222 c         1233 g         1255 t
ORIGIN      
        1 taggggtctg acgctcagtg gaacgaaaac tcacgttaag caacgttttc tgcctctgac
       61 gcctctttta atggtctcag atgtcctttg gtcaccagtt ctgccagcgt gaaggaataa
      121 tggccgagca tattgatatg tccgtggcaa agcggggaga ggcgtgcgat atcttcatca
      181 ttcagtgttt caccctgcgc ccggagatga tccagggctg cctgcatata aatagtgttc
      241 cataacacga cggcgttagt gaccagcccc agtgtgccca gttgatcttc ctgaccgtcg
      301 gtatatcgtt ttcttatctc acctttttga ccgtgacaga tggctctggc aacggcatgg
      361 cgactttctc cccgattaag ctgggtcaga atgcgccggc ggtaatcttc atcatcaata
      421 taattaagca gatacagcgt tttgttgatg cgccccactt caatgattgc ctgagtcagt
      481 ccggaaggac gttcactttt cagcaatgaa cggaccagca ctgaaacctg tactttgccc
      541 agcttcaggg agccagcggt ccggatcatt tcgtcccact gaaggactat ttttcgggga
      601 tctgattgcc ctctggcaat atcattcagc acgccatagt cggcatcatg gtccattcgc
      661 cagaaaaccg aagcaccggc atcagccagg cgtggagaaa actggtatcc cagcagccag
      721 aaaaggccaa agacaagttc gctggcacct gctgtatcgg tcataatttc ggttggattc
      781 agcccggtct cctgttccag aagaccttcc agcacaaaga tagagtccct cagcgtcccc
      841 ggtataacga tgccatgaaa gccggaatac tgatcggaca caaagttgta ccaggtgatc
      901 cctctgttat taccaaagta tttgcggttc ggtccggcat tgattgttct gactggcgta
      961 acaaagcgca ttccatctgc agatgccact tctcctccac cccatatctg tgccagtggc
     1021 agcgttgcct gaaaatcaac cagtctggca ttagcgctgg tgatagtttc agcccgcaga
     1081 tagttcgctt ttgtccagtt cagccggtgt cgggtcagtg caggaacatt tgatctgatc
     1141 agtggttcca gaccgatatt gcaggcttca gccatcagca cggcgctgat gctgacgggc
     1201 agatcatcaa ctctggcact ggcttcacta gcatggaaaa actcatcagc aaatccggta
     1261 tgggcgttaa tttcgagcag caactccgtt aaatccaccg gagggagtag atcactgatc
     1321 attttgctca gtcgtttcag actgtccggc tcatcaagac tggcgagggg agaaattgtc
     1381 aaccggggct tcgggccaga aacatcgagt tcgacagcct cattttcgca aagacgtgca
     1441 gcaacctgtc tgtaacgact atcaagctga tgacccagag attttattgc ttcctgcggg
     1501 tctgtcgggt gccccaaaga acgataaacc ttaatccggt ttgcctgcca gtcagcaccc
     1561 tgtagtaatc ttgcacgagg atctccccac cggttactgc cggtaacgta gacatccctc
     1621 cgcctcagac tatcctgcag tttactgaga aagcagagcg tgtatcccct gcgggtgata
     1681 tgtttttcct tgttaatcac cagccgtttc catgaccgac tgataatttc cgttggtgcg
     1741 tcgtcaaaaa actgccgccg tgagctgaac tcccggctga ggtagtcaca ggcattcaga
     1801 gtggtaaccc cggcaggtgc ggatgaaaat ttaacggtat tcagcagatg gggcaggaaa
     1861 cgacgaacgc gcccgtactg ctccaccatt tcttcatgaa aattatcgtc tgagggccgg
     1921 gcaatttcac ggacaagcgt gatgatttca gccagctttt gccttgggat gtagctgaac
     1981 acctcagcac gaatcgattc gtccggtgtt tcttctttca gcaggtacga acatgcgctg
     2041 gcgagcgcca atgcagattt atccagatcc ttcagcgagc ggagccgttt tttctgccca
     2101 atctttctgg cgtcacggat gataacggcc agcatggcgt ccagaacgtc caatgcatca
     2161 tccagcgcca gcgtttccca tgcaaggaca aaggcaacca gaaccgccat ccttttctgc
     2221 ggtgacatcc tggcaatatt gaacaccgaa gtcataccag cataacgtgc gagatttttc
     2281 aggcgcacag ccgggagtgt actcaggttt tcagcatgca ggccaaaatc gttcagagtt
     2341 ttccagcgtt caattgcttc attaaacgcc ggaccactga tggtcacagg gccctttttc
     2401 agtgattcca gtaaagacag gcggctgcaa tcagttggcc ccagcagcat ctccagctgt
     2461 gaacgctgtt cggctgacgg tatcagtgcc agtttgttcc acaggcgcaa cgtcgccttt
     2521 tcccttacct ctgaaatcaa ccgggtcagc gtagtggctc cggggagaat aatacgatgt
     2581 tgcataagcc accctgtcgc cagatcgaaa agcaggccag gacgttcgtt gcttatccag
     2641 ctccgggtat ataaaagacg ggtaaggcga aatgtccagg gccaggcaaa ttcacgatac
     2701 tgatagtgct gacgtatcag cgctgcatgc tcacggcggg tattttccct ctgaccgtat
     2761 tctgcaagaa cggtgatatc acgaatcccg agctgtctgg cggtaaaatg ccggacgccg
     2821 gaaggaatat gattcatatc ggtgaggaag gtgcccagaa aacggacaca tccaatttgc
     2881 agggcaatgc ccagacggtt gtgatcacct ctgctttttc cgataaattc cttgtctgct
     2941 tcatcaaggt gaaaatatcg tgccagctga agctcatccg gttcaccggt gaatctgcca
     3001 tagctttcag tctgctcagt ggtcagaaag tcaacgggca tatcggcctc cctgcctgac
     3061 gggcatttag taacattttt ccaaccgtac gaaatgttat aaattatcgg acatcgtaaa
     3121 actgttacat taatatgtct attaaatcgt aaatttgtaa taatagacat gagttgtccg
     3181 atattcgatt taaggtacat ttttatgcga ctttttggtt acgctcgggt ctcaaccagt
     3241 cagcagtctc ttgatcttca ggtcagagca ctcaaagacg caggtgtgaa agcaaaccgt
     3301 atatttaccg ataaggcatc cggcagttca acagaccggg aagggctgga tttgctgagg
     3361 atgaaggtgg aggaaggtga tgtcattctg gttaagaagc tcgaccgtct tggccgcgac
     3421 actgccgata tgatccaact gataaaggaa tttgacgctc agggcgtggc agtccggttc
     3481 attgatgacg ggatcagtac cgacggtgat atggggcaaa tggtggtcac catcctgtcg
     3541 gctgtggcac aggctgaacg ccggaggatc ctagaacgca cgaatgaggg ccgacaggaa
     3601 gcaaagctga aaggaatcaa atttggccgc aggcgtaccg tggacaggaa cgtcgtgctg
     3661 acgcttcatc agaagggcac tggtgcaacg gaaattgctc atcagctcag tattgcccgc
     3721 tccacggttt ataaaattct tgaagacgaa agggcctcgt gatacgccta tttttatagg
     3781 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
     3841 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
     3901 aataaccctg gtaaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
     3961 ttcgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
     4021 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
     4081 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
     4141 tgatgagcac ttttaaagtt ctgctatgtg gtgcggtatt atcccgtgtt gacgccgggc
     4201 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
     4261 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
     4321 ccatgagtga taacactgct gccaacttac ttctgacaac gatcggagga ccgaaggagc
     4381 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     4441 agctgaatga agccatacca aacgacgagc gtgacaccac gatgcctgca gcaatggcaa
     4501 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     4561 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     4621 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     4681 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     4741 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     4801 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     4861 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     4921 gtgagttttc gttccactga gcgtcagacc ccta
//
LOCUS       DAJVUY010000431         4954 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.223, whole genome shotgun sequence.
ACCESSION   DAJVUY010000431 DAJVUY010000000
VERSION     DAJVUY010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.223"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(36..3041)
                     /locus_tag="OQQ72_004457"
     CDS             complement(36..3041)
                     /locus_tag="OQQ72_004457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS2013915.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            3205..3762
                     /locus_tag="OQQ72_004458"
     CDS             3205..3762
                     /locus_tag="OQQ72_004458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2013916.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            3945..4805
                     /gene="blaTEM"
                     /locus_tag="OQQ72_004459"
     CDS             3945..4805
                     /gene="blaTEM"
                     /locus_tag="OQQ72_004459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TEM family class A beta-lactamase"
                     /protein_id="HCS2013917.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNGAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
BASE COUNT         1243 a         1222 c         1234 g         1255 t
ORIGIN      
        1 taggggtctg acgctcagtg gaacgaaaac tcacgttaag caacgttttc tgcctctgac
       61 gcctctttta atggtctcag atgtcctttg gtcaccagtt ctgccagcgt gaaggaataa
      121 tggccgagca tattgatatg tccgtggcaa agcggggaga ggcgtgcgat atcttcatca
      181 ttcagtgttt caccctgcgc ccggagatga tccagggctg cctgcatata aatagtgttc
      241 cataacacga cggcgttagt gaccagcccc agtgtgccca gttgatcttc ctgaccgtcg
      301 gtatatcgtt ttcttatctc acctttttga ccgtgacaga tggctctggc aacggcatgg
      361 cgactttctc cccgattaag ctgggtcaga atgcgccggc ggtaatcttc atcatcaata
      421 taattaagca gatacagcgt tttgttgatg cgccccactt caatgattgc ctgagtcagt
      481 ccggaaggac gttcactttt cagcaatgaa cggaccagca ctgaaacctg tactttgccc
      541 agcttcaggg agccagcggt ccggatcatt tcgtcccact gaaggactat ttttcgggga
      601 tctgattgcc ctctggcaat atcattcagc acgccatagt cggcatcatg gtccattcgc
      661 cagaaaaccg aagcaccggc atcagccagg cgtggagaaa actggtatcc cagcagccag
      721 aaaaggccaa agacaagttc gctggcacct gctgtatcgg tcataatttc ggttggattc
      781 agcccggtct cctgttccag aagaccttcc agcacaaaga tagagtccct cagcgtcccc
      841 ggtataacga tgccatgaaa gccggaatac tgatcggaca caaagttgta ccaggtgatc
      901 cctctgttat taccaaagta tttgcggttc ggtccggcat tgattgttct gactggcgta
      961 acaaagcgca ttccatctgc agatgccact tctcctccac cccatatctg tgccagtggc
     1021 agcgttgcct gaaaatcaac cagtctggca ttagcgctgg tgatagtttc agcccgcaga
     1081 tagttcgctt ttgtccagtt cagccggtgt cgggtcagtg caggaacatt tgatctgatc
     1141 agtggttcca gaccgatatt gcaggcttca gccatcagca cggcgctgat gctgacgggc
     1201 agatcatcaa ctctggcact ggcttcacta gcatggaaaa actcatcagc aaatccggta
     1261 tgggcgttaa tttcgagcag caactccgtt aaatccaccg gagggagtag atcactgatc
     1321 attttgctca gtcgtttcag actgtccggc tcatcaagac tggcgagggg agaaattgtc
     1381 aaccggggct tcgggccaga aacatcgagt tcgacagcct cattttcgca aagacgtgca
     1441 gcaacctgtc tgtaacgact atcaagctga tgacccagag attttattgc ttcctgcggg
     1501 tctgtcgggt gccccaaaga acgataaacc ttaatccggt ttgcctgcca gtcagcaccc
     1561 tgtagtaatc ttgcacgagg atctccccac cggttactgc cggtaacgta gacatccctc
     1621 cgcctcagac tatcctgcag tttactgaga aagcagagcg tgtatcccct gcgggtgata
     1681 tgtttttcct tgttaatcac cagccgtttc catgaccgac tgataatttc cgttggtgcg
     1741 tcgtcaaaaa actgccgccg tgagctgaac tcccggctga ggtagtcaca ggcattcaga
     1801 gtggtaaccc cggcaggtgc ggatgaaaat ttaacggtat tcagcagatg gggcaggaaa
     1861 cgacgaacgc gcccgtactg ctccaccatt tcttcatgaa aattatcgtc tgagggccgg
     1921 gcaatttcac ggacaagcgt gatgatttca gccagctttt gccttgggat gtagctgaac
     1981 acctcagcac gaatcgattc gtccggtgtt tcttctttca gcaggtacga acatgcgctg
     2041 gcgagcgcca atgcagattt atccagatcc ttcagcgagc ggagccgttt tttctgccca
     2101 atctttctgg cgtcacggat gataacggcc agcatggcgt ccagaacgtc caatgcatca
     2161 tccagcgcca gcgtttccca tgcaaggaca aaggcaacca gaaccgccat ccttttctgc
     2221 ggtgacatcc tggcaatatt gaacaccgaa gtcataccag cataacgtgc gagatttttc
     2281 aggcgcacag ccgggagtgt actcaggttt tcagcatgca ggccaaaatc gttcagagtt
     2341 ttccagcgtt caattgcttc attaaacgcc ggaccactga tggtcacagg gccctttttc
     2401 agtgattcca gtaaagacag gcggctgcaa tcagttggcc ccagcagcat ctccagctgt
     2461 gaacgctgtt cggctgacgg tatcagtgcc agtttgttcc acaggcgcaa cgtcgccttt
     2521 tcccttacct ctgaaatcaa ccgggtcagc gtagtggctc cggggagaat aatacgatgt
     2581 tgcataagcc accctgtcgc cagatcgaaa agcaggccag gacgttcgtt gcttatccag
     2641 ctccgggtat ataaaagacg ggtaaggcga aatgtccagg gccaggcaaa ttcacgatac
     2701 tgatagtgct gacgtatcag cgctgcatgc tcacggcggg tattttccct ctgaccgtat
     2761 tctgcaagaa cggtgatatc acgaatcccg agctgtctgg cggtaaaatg ccggacgccg
     2821 gaaggaatat gattcatatc ggtgaggaag gtgcccagaa aacggacaca tccaatttgc
     2881 agggcaatgc ccagacggtt gtgatcacct ctgctttttc cgataaattc cttgtctgct
     2941 tcatcaaggt gaaaatatcg tgccagctga agctcatccg gttcaccggt gaatctgcca
     3001 tagctttcag tctgctcagt ggtcagaaag tcaacgggca tatcggcctc cctgcctgac
     3061 gggcatttag taacattttt ccaaccgtac gaaatgttat aaattatcgg acatcgtaaa
     3121 actgttacat taatatgtct attaaatcgt aaatttgtaa taatagacat gagttgtccg
     3181 atattcgatt taaggtacat ttttatgcga ctttttggtt acgctcgggt ctcaaccagt
     3241 cagcagtctc ttgatcttca ggtcagagca ctcaaagacg caggtgtgaa agcaaaccgt
     3301 atatttaccg ataaggcatc cggcagttca acagaccggg aagggctgga tttgctgagg
     3361 atgaaggtgg aggaaggtga tgtcattctg gttaagaagc tcgaccgtct tggccgcgac
     3421 actgccgata tgatccaact gataaaggaa tttgacgctc agggcgtggc agtccggttc
     3481 attgatgacg ggatcagtac cgacggtgat atggggcaaa tggtggtcac catcctgtcg
     3541 gctgtggcac aggctgaacg ccggaggatc ctagaacgca cgaatgaggg ccgacaggaa
     3601 gcaaagctga aaggaatcaa atttggccgc aggcgtaccg tggacaggaa cgtcgtgctg
     3661 acgcttcatc agaagggcac tggtgcaacg gaaattgctc atcagctcag tattgcccgc
     3721 tccacggttt ataaaattct tgaagacgaa agggcctcgt gatacgccta tttttatagg
     3781 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
     3841 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
     3901 aataaccctg gtaaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
     3961 ttcgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
     4021 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
     4081 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
     4141 tgatgagcac ttttaaagtt ctgctatgtg gtgcggtatt atcccgtgtt gacgccgggc
     4201 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
     4261 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
     4321 ccatgagtga taacactgct gccaacttac ttctgacaac gatcggagga ccgaaggagc
     4381 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     4441 agctgaatgg agccatacca aacgacgagc gtgacaccac gatgcctgca gcaatggcaa
     4501 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     4561 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     4621 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     4681 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     4741 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     4801 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     4861 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     4921 gtgagttttc gttccactga gcgtcagacc ccta
//
LOCUS       DAJVUY010000432         3721 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.257, whole genome shotgun sequence.
ACCESSION   DAJVUY010000432 DAJVUY010000000
VERSION     DAJVUY010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.257"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(78..728)
                     /gene="tetR(A)"
                     /locus_tag="OQQ72_004460"
     CDS             complement(78..728)
                     /gene="tetR(A)"
                     /locus_tag="OQQ72_004460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(A)"
                     /protein_id="HCS2013918.1"
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWH
                     FRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAG
                     TRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGG
                     TVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     gene            834..2033
                     /gene="tet(A)"
                     /locus_tag="OQQ72_004461"
     CDS             834..2033
                     /gene="tet(A)"
                     /locus_tag="OQQ72_004461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(A)"
                     /protein_id="HCS2013919.1"
                     /translation="MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAH
                     YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG
                     RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH
                     APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV
                     FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE
                     RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG
                     QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSG
                     AGQRADR"
     gene            complement(2065..2949)
                     /locus_tag="OQQ72_004462"
     CDS             complement(2065..2949)
                     /locus_tag="OQQ72_004462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCS2013920.1"
                     /translation="MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALP
                     AGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLM
                     VVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGT
                     VLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAG
                     LTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWL
                     GQRSNRTPRARIACRKSP"
     gene            complement(3087..3494)
                     /locus_tag="OQQ72_004463"
     CDS             complement(3087..3494)
                     /locus_tag="OQQ72_004463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001501368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HCS2013921.1"
                     /translation="MRGRPVLFPNFSLGEEYEHAPPATNRQISPYLPSGRFRTGLPVE
                     GLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD
                     YDVRLVQDCCYDPDRDAHEALLRSGFGGRVQVV"
     gene            3483..3721
                     /locus_tag="OQQ72_004464"
                     /pseudo
     CDS             3483..3721
                     /locus_tag="OQQ72_004464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          710 a         1170 c         1137 g          704 t
ORIGIN      
        1 gcggtggaaa gggggagggg atgttgtcta catggctctg ctgtagtgag tgggttgcgc
       61 tccggcagcg gtcctgatca atcgtcaccc tttctcggtc cttcaacgtt cctgacaacg
      121 agcctccttt tcgccaatcc atcgacaatc accgcgagtc cctgctcgaa cgctgcgtcc
      181 ggaccggctt cgtcgaaggc gtctatcgcg gcccgcaaca gcggcgagag cggagcctgt
      241 tcaacggtgc cgccgcgctc gccggcatcg ctgtcgccgg cctgctcctc aagcacggcc
      301 ccaacagtga agtagctgat tgtcatcagc gcattgacgg cgtccccggc cgaaaaaccc
      361 gcctcgcaga ggaagcgaag ctgcgcgtcg gccgtttcca tctgcggtgc gcccggtcgc
      421 gtgccggcat ggatgcgcgc gccatcgcgg taggcgagca gcgcctgcct gaagctgcgg
      481 gcattcccga tcagaaatga gcgccagtcg tcgtcggctc tcggcaccga atgcgtatga
      541 ttctccgcca gcatggcttc ggccagtgcg tcgagcagcg cccgcttgtt cctgaagtgc
      601 cagtaaagcg ccggctgctg aacccccaac cgttccgcca gtttgcgtgt cgtcagaccg
      661 tctacgccga cctcgttcaa caggtccagg gcggcacgga tcactgtatt cggctgcaac
      721 tttgtcatgc ttgacacttt atcactgata aacataatat gtccaccaac ttatcagtga
      781 taaagaatcc gcgcgttcaa tcggaccagc ggaggctggt ccggaggcca gacgtgaaac
      841 ccaacagacc cctgatcgta attctgagca ctgtcgcgct cgacgctgtc ggcatcggcc
      901 tgattatgcc ggtgctgccg ggcctcctgc gcgatctggt tcactcgaac gacgtcaccg
      961 cccactatgg cattctgctg gcgctgtatg cgttgatgca atttgcctgc gcacctgtgc
     1021 tgggcgcgct gtcggatcgt ttcgggcggc ggccggtctt gctcgtctcg ctggccggcg
     1081 ctgctgtcga ctacgccatc atggcgacgg cgcctttcct ttgggttctc tatatcgggc
     1141 ggatcgtggc cggcatcacc ggggcgactg gggcggtagc cggcgcttat attgccgata
     1201 tcactgatgg cgatgagcgc gcgcggcact tcggcttcat gagcgcctgt ttcgggttcg
     1261 ggatggtcgc gggacctgtg ctcggtgggc tgatgggcgg tttctccccc cacgctccgt
     1321 tcttcgccgc ggcagccttg aacggcctca atttcctgac gggctgtttc cttttgccgg
     1381 agtcgcacaa aggcgaacgc cggccgttac gccgggaggc tctcaacccg ctcgcttcgt
     1441 tccggtgggc ccggggcatg accgtcgtcg ccgccctgat ggcggtcttc ttcatcatgc
     1501 aacttgtcgg acaggtgccg gccgcgcttt gggtcatttt cggcgaggat cgctttcact
     1561 gggacgcgac cacgatcggc atttcgcttg ccgcatttgg cattctgcat tcactcgccc
     1621 aggcaatgat caccggccct gtagccgccc ggctcggcga aaggcgggca ctcatgctcg
     1681 gaatgattgc cgacggcaca ggctacatcc tgcttgcctt cgcgacacgg ggatggatgg
     1741 cgttcccgat catggtcctg cttgcttcgg gtggcatcgg aatgccggcg ctgcaagcaa
     1801 tgttgtccag gcaggtggat gaggaacgtc aggggcagct gcaaggctca ctggcggcgc
     1861 tcaccagcct gacctcgatc gtcggacccc tcctcttcac ggcgatctat gcggcttcta
     1921 taacaacgtg gaacgggtgg gcatggattg caggcgctgc cctctacttg ctctgcctgc
     1981 cggcgctgcg tcgcgggctt tggagcggcg cagggcaacg agccgatcgc tgatcgtgga
     2041 aacgataggc ctatgccatg cgggtcaagg cgacttccgg caagctatac gcgccctagg
     2101 agtgcggttg gaacgttggc ccagccagat actcccgatc acgagcagga cgccgatgat
     2161 ttgaagcgca ctcagcgtct gatccaagaa caaccatcct agcaacacgg cggtccccgg
     2221 gctgagaaag cccagtaagg aaacaactgt aggttcgagt cgcgagatcc cccggaacca
     2281 aaggaagtag gttaaacccg ctccgatcag gccgagccac gccaggccga gaacattggt
     2341 tcctgtaggc atcgggattg gcggatcaaa cactaaagct actggaacga gcagaagtcc
     2401 tccggccgcc agttgccagg cggtaaaggt gagcagaggc acgggaggtt gccacttgcg
     2461 ggtcagcacg gttccgaacg ccatggaaac cgcccccgcc aggcccgctg cgacgccgac
     2521 aggatctagc gctgcgtttg gtgtcaacac caacagcgcc acgcccgcag ttccgcaaat
     2581 agcccccagg accgccatca atcgtatcgg gctacctagc agagcggcag agatgaacac
     2641 gaccatcagc ggctgcacag cgcctaccgt cgccgcgacc ccgcccggca ggcggtagac
     2701 cgaaataaac aacaagctcc agaatagcga aatattaagt gcgccgagga tgaagatgcg
     2761 catccaccag attcccgttg gaatctgtcg gacgatcatc acgagcaata aacccgccgg
     2821 caacgcccgc agcatcgcga ccgtcatcgg tgagaagttc ggcaggtatt gggtggtgac
     2881 aatgtaggtg ctgccccaaa tggcaggtgc tatcgctgtg aacaataaat cgggcgtgcg
     2941 taatgacatg cgattacaag acctccgcta cggcgatggg tttttgagag ttgcaggcgc
     3001 cgcgatgacc gcaccctgac ttggactggc cctgcctcgc accaatccac ctgcggctat
     3061 ggccgcgatc atgcgaggcc cgaaaattac acgacctgta cacgtccgcc gaacccggaa
     3121 cgcaacagag cttcgtgggc atcccgatcc gggtcgtagc agcagtcctg gaccaaacgc
     3181 acgtcgtagt ccgcatcact agcccaggcg acgcttgaaa gaacaacgcc ggtggtgctt
     3241 atcccggcca tgacaagcgt gcttacgccg cgcgtccgaa ggtcggcgtc gagcgccgtg
     3301 ccataaaaga cgctggctcg cggacatgca tagaaaaggt cgccccgttc gatcgcaagc
     3361 ccttcgacgg gcagaccggt gcgaaatcgt ccgctcggga gatacggtga gatttggcga
     3421 ttcgtcgccg gcggcgcatg ttcatactct tcgccgagcg aaaagttggg gaacagcacg
     3481 ggccggccgc gcaaggcgtg ctggcagccg tgcagaccct gcgtgagatg aacgccgaca
     3541 acctgcgcaa ggtgccggcc gatgcaccca cggccttcat caagccgcgc tggaagccgc
     3601 tggtgatcac cccggaaggc ctcgaccgga aattctacga aatctgcgcc ctgtccgagc
     3661 tgaagaacgc cctgcgctcc ggcgacatct gggtcaaggg ctcgcggcag ttccgcgact
     3721 t
//
LOCUS       DAJVUY010000433         3379 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.265, whole genome shotgun sequence.
ACCESSION   DAJVUY010000433 DAJVUY010000000
VERSION     DAJVUY010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.265"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(4..1461)
                     /gene="pepD"
                     /locus_tag="OQQ72_004465"
     CDS             complement(4..1461)
                     /gene="pepD"
                     /locus_tag="OQQ72_004465"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS2013922.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            1722..2180
                     /gene="gpt"
                     /locus_tag="OQQ72_004466"
     CDS             1722..2180
                     /gene="gpt"
                     /locus_tag="OQQ72_004466"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS2013923.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            2272..>3379
                     /gene="frsA"
                     /locus_tag="OQQ72_004467"
     CDS             2272..>3379
                     /gene="frsA"
                     /locus_tag="OQQ72_004467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS2013924.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFS"
BASE COUNT          779 a          868 c          877 g          855 t
ORIGIN      
        1 taattacttc gccggaattt ctttcagcag ttcagtcagc agtgtccagt aatgacctac
       61 gctttcgatg tgaacttgct catccggaga gtgtggaccg gtgatagttg gcccgataga
      121 aaccatgtcc atttccggat acggtttttt gaacagacca cattccaggc ccgcgtggat
      181 aatctggatg ttcggcgtct tgttgaacag gcgctgatag gtttcacgta ccagatgcat
      241 caccggagaa ttagcgtccg gctgccagcc aggatatgcg cctttcgctt cggttttcgc
      301 gccagccagt ttacccagcg aatccagcat gctcaccacg tagtctttac cgctgtcgat
      361 cagtgaacgg atcaggcagt gaatttctac gttattgtca gtcatggtca ccacaccgac
      421 gttcagggag gtttcaacca cacctttggc tacatcggag ttgcggatca caccgttcgg
      481 ggtggcgttc agcagacgaa taaaggtatc gcgagatttc gcaatcaggg cagctttatc
      541 gttcgctaca gagtccagca acaaggccag atttttctct ttctctgcca gctcgttttt
      601 caggatctcc tgataggtat tcaccagaga tttcagtgcg tcgactttat cagctgcgac
      661 agcaatggtc gcaaaggctt cacgcgggat ggcgttacgc agtgtgccgc cgttgaaatc
      721 gataaggcgc aggtccagtt cttctgcatg acccgccagg aagcgcacca gcagtttgtt
      781 ggcattaccc aggccaacgt ggatttcacc gccggagtga ccgcctttca gaccttttaa
      841 ggttaacttg aaggtttcaa aaccagctgg aaccgcttca cgatctaaat gcaggttgga
      901 ggtgaagtcg ataccccccg cacaacccat gtagatttca ccttcttctt cggagtcggt
      961 gttaatcaga atatcagcct gcaaccagtt gctctgtaag ccaaaagcac cgtccatacc
     1021 ggcttcttcg gtcatggtca gcagcacttc cagcggaccg tgaaccacgt tttcgtcagc
     1081 cagaaccgcc agtgcagagg ccataccaat gccgttatcc gcacccagcg tggtgccgcg
     1141 cgctttaacc cattcgccat caatataagg ctggatagga tctttcgtga agtcatgcac
     1201 ggtgtcgtta tttttctgcg gcaccatatc gaggtgggcc tgtaagacga ccggtttacg
     1261 attttccata cctgcggtag caggtttacg aatcaggata ttacctacct gatcgcgttc
     1321 gacatggaaa cctttctctt ttgcccaacc aacaatgtat tcagcgagtt gctcttcatg
     1381 ataggacggg tgcggaatag aacagatttt ggcaaaaata tcccacagcg gctgtggaga
     1441 taattgagac agttcagaca cgttaagtct ccttgtcgat cacccgcaaa acagtattgc
     1501 aggtcacagg gttagcagaa aatgttgtca acacaagaca ggcttgcgag atatgtttga
     1561 gaataccact ttatcccgcg tcagggagag gcagtgcgta aaaagacgcg gactcatgtg
     1621 aaatactggt ttttagtgcg ccagatctct ataatctcgc gcaacctatt ttcccctcga
     1681 acacttttta agccgtagat aaacaggctg ggacacttca catgagcgaa aaatacatcg
     1741 tcacctggga catgttgcag atccatgcac gtaaactcgc aagccgactg atgccttctg
     1801 aacaatggaa aggcattatt gccgtaagcc gtggcggtct ggtaccgggt gcgttactgg
     1861 cgcgtgaact gggtattcgt catgtcgata ccgtttgtat ttccagctac gatcacgaca
     1921 accagcgaga gcttaaagtg ctgaaacgcg cagaaggcga tggcgaaggc ttcatagtta
     1981 ttgatgacct ggtggatacc ggtggtactg ctgttgcgat tcgtgaaatg tatccaaaag
     2041 cgcactttgt caccatcttc gcaaaaccgg ctggtcgtcc gctggttgat gactatgttg
     2101 ttgatattcc gcaagatacc tggatcgaac agccgtggga tatgggcgtc gtattcgtcc
     2161 cgccaatctc cggtcgctaa tcttttcaac gcctggcact gccgggcgtt gttcttttta
     2221 acttcaggca ggttacaata gtttccagta agtattctgg aggctgcatc catgacacag
     2281 gcaaacctga gcgaaaccct gttcaaaccc cgctttaaac atcctgaaac ctcgacgcta
     2341 gtccgccgct ttaatcacgg cgcacaaccg cctgtgcagt cggctcttga tggtaaaacc
     2401 atccctcact ggtatcgcat gattaaccgt ctgatgtgga tctggcgcgg tattgaccca
     2461 cgtgaaatcc tcgacgtcca ggcacgtatt gtgatgagcg atgctgaacg taccgacgat
     2521 gatttatacg atactgtgat tggctaccgt ggtggcaact ggatttatga gtgggccacc
     2581 caggcgatgg tgtggcaaca aaaagcctgt gcggaagaag atccgcaact cagtggtcga
     2641 cactggctgc atgcggctac gttgtacaac attgccgcct atcctcatct gaaaggagat
     2701 gacctggccg agcaagcgca ggctttatca aaccgcgcct atgaagaggc cgcccagcgt
     2761 ctgccgggca cgatgcggca gatggagttt accgtacccg gcggtgcgcc catcaccggc
     2821 tttttgcata tgccgaaagg cgatggcccg ttcccgacag tattaatgtg tggtggtctg
     2881 gatgcgatgc agacggacta ttacagcctg tatgaacgtt attttgcgcc gcgcggcatt
     2941 gtgatgctga ctattgatat gccgtcggtg ggcttttctt caaaatggaa gctcacccag
     3001 gactccagcc tgttgcatca gcacgtctta aaggcgctgc ctaacgtacc gtgggtggat
     3061 cacactcgcg tcgcggcctt tggtttccgt ttcggcgcta acgttgccgt gcgtctggca
     3121 tatcttgaat cgccgcgtct gaaagcggtt gcctgtcttg gtccggtagt tcataccctg
     3181 ttgagtgatt ttaagtgcca gcaacaggtg ccggaaatgt atcttgacgt tctggcgagt
     3241 cgtttgggga tgcatgatgc ttccgacgaa gcgttacgcg tggagctgaa tcgctattca
     3301 ttaaaagtgc aaggattgct gggacgtcgc tgcccaacgc caatgttatc aggctactgg
     3361 aagaacgatc cgttcagcc
//
LOCUS       DAJVUY010000434         3249 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.269, whole genome shotgun sequence.
ACCESSION   DAJVUY010000434 DAJVUY010000000
VERSION     DAJVUY010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.269"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(45..1060)
                     /locus_tag="OQQ72_004468"
                     /pseudo
     CDS             complement(45..1060)
                     /locus_tag="OQQ72_004468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1455..2111
                     /locus_tag="OQQ72_004469"
     CDS             1455..2111
                     /locus_tag="OQQ72_004469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS2013925.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            complement(2430..2846)
                     /locus_tag="OQQ72_004470"
     CDS             complement(2430..2846)
                     /locus_tag="OQQ72_004470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS2013926.1"
                     /translation="MDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKL
                     VFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETK
                     VSTLCQELGITRQTLYRHISPVGQLRADGIKLLNRG"
     gene            complement(2891..>3249)
                     /locus_tag="OQQ72_004471"
     CDS             complement(2891..>3249)
                     /locus_tag="OQQ72_004471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HCS2013927.1"
                     /translation="DNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEM
                     RRYGEPVSTAFVESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVC
                     WYPGFQSDGKGPAMAA"
BASE COUNT          771 a          850 c          752 g          876 t
ORIGIN      
        1 aacgtgagtt ttcgttccac tgagcgtcag acccctaaaa tcctgatgct gatgtagtcc
       61 cgttttatcg tcatcacgaa gctttctgct atgccattgc tttccgggct tcgcactgct
      121 gtcgtacaag gctccagtcc cagcaaccgg gcgaacgccg gcactgttgg caactgcctt
      181 ccgaagcgtt tttccaccgc acccagcatg acatcctgca ccgtttcttt gtcatagcct
      241 ccggtgctcg ctgcccagtc aatgatctcc ctgtcgcagc agtcctgcgc gaaggtcacc
      301 cgcagctttt cgccattatc acagcggaac tcaaagccat ctgagcacca gcgccggtta
      361 ctttccgcta ctgctacgcg ccccttatgg gcccgcttac ggcaaggatc agcgggttta
      421 cgttcaagaa gcagattatg cgttctcata atgcgataca cccgctttgc attaaccaca
      481 ggcaggccgt cccgctccga ctcccgtcgc agcagcgccc acacacggcg ataaccatac
      541 gtcggcaggt cagccaccgc catgtttatc cgggacaata cggtggtatc gtcagaacgg
      601 ggctgccgtc tgcgatcctg tcagtcagat ggccggtgaa cccgaatgct caactgcgca
      661 cgcgacacgc caagacttct gcaaacgtcg cttattcgtc gttcccaggc aacgagggcg
      721 catgcgcaat ccattttttt gcccggccga actccacggc ctctttgagt atctcggctt
      781 ccatcgtctt tttgcccaga aggcgctgga gttcgcgaat ttgcttattg gcggcagcga
      841 gttcggaggc cggcaccact tcctcgcccg atgcaacagc cgtcagtgaa ccgtcttaat
      901 attgcttgcg ccatttgaat atctggtttg cattgatgcc atgcaggcgc gcgacatgag
      961 acacggtcat accgggctcc atagtctgct gaataatggc aattttttcc tgcggtgtac
     1021 gacgccgacg ccgctcaggt cctgataaca cttcaaccat cttatcgttc tgactggtat
     1081 taaacatagt tccaagacta cctcttattt taagagagtc gaagtgtctg gtgatctatg
     1141 gggccagtct agccctcttc caagtgtagg gagatatagt caaagtttgc ttctccgccg
     1201 atgagtccgc cctgcgtcgg atagtccgat tttttaccgg cgaagcacgg ctctcctaac
     1261 cctatctaaa gcgaataact tttttcaaca gggccgcgtg ccaatgcaag agcgataggc
     1321 gctctacgcg ccaatttgac cacttaaaac aggtaaattg aggggttgta atgtgttgat
     1381 gtaacaggct tttattttaa tgtcttggca tatgtataat ggtagtctag ccctcctttc
     1441 aacaaggagt actcatggaa acctacaatc atacatatcg gcaccacaac ttttcacata
     1501 aagacttaag tgatctcacc ttcaccgctt gcacattcat tcgcagcgac tttcgacgtg
     1561 ctaacttgcg tgatacgaca ttcgtcaact gcaagttcat tgaacagggt gatatcgaag
     1621 gctgccactt tgatgtcgca gatcttcgtg atgcaagttt ccaacaatgc caacttgcga
     1681 tggcaaactt cagtaatgcc aattgctacg gtatagagtt ccgtgcgtgt gatttaaaag
     1741 gtgccaactt ttcccgaaca aactttgccc atcaagtgag taatcgtatg tacttttgct
     1801 cagcatttat ttctggatgt aatctttcct atgccaatat ggagagggtt tgtttagaaa
     1861 aatgtgagtt gtttgaaaat cgctggatag gaacgaacct agcgggtgca tcactgaaag
     1921 agtcagactt aagtcgaggt gttttttccg aagatgtctg ggggcaattt agcctacagg
     1981 gtgccaattt atgccacgcc gaactcgacg gtttagatcc ccgcaaagtc gatacatcag
     2041 gtatcaaaat tgcagcctgg cagcaagaac tgattctcga agcactgggt attgttgttt
     2101 atcctgacta attgctttga tgtgtgattt taaacgctca aatttataaa acgaataata
     2161 ttgtcaacct tgcaataata gacataggga caaccatgta taaattttta ccctcaggcg
     2221 tcttcacaat agagccatat agcagtgggt cacttagtgg gcttaatttt tccattaaag
     2281 ataatattaa tattgctcag tataaaacat catatggtag cccatcttgg caagtaaaca
     2341 taaggctgcc atttataagg cactgttgca aaaatgtgga ggtgataggg gtactacgcc
     2401 ggaaccccag atttttccgt ccgttcaaat tatccacggt tgagcagctt gatcccgtcc
     2461 gcccgcagtt gaccaacagg ggaaatatgc ctgtacaaag tttgccgggt tatcccaagt
     2521 tcctggcata gcgtactgac ctttgtttct gattgtccca ttgatgccat tgccagtcgc
     2581 agtttgactg gcgtcatttt ataaggtcgg ccgccgttcc gcccacgggc tcttgctgat
     2641 gccagacctg cagtcgttct ttcagcaatc agttcgcgct caaactccgc cagtgcggca
     2701 aagataccga agacaagctt gccagcggcc gttgttgtgt cgatagtcgc cccgtgaccg
     2761 gtcagcactt tcagaccggt ccccctcgcg gtcaggtcgt gcactgtatt aatgagatga
     2821 cgaagatcac gaccgaggcg gtccagcttc catacgaccg agagcataaa aaatattggg
     2881 gcagcgtgag ctatgctgcc atcgctggtc ccttcccgtc actttgaaaa cccggatacc
     2941 agcagacaaa tttatcctgc agttcgttat tcaaaacggc ggtccgggtc tgtaacaaat
     3001 aatgagcccc ttttctgctc cactgcatct gctgcttttt ggccattcgt ctggcgatca
     3061 cttcattgat cgtggattcc acaaacgcgg ttgataccgg ctctccgtac cgacgcattt
     3121 cgccgtagtt tgggatcatc atcttattat tccggatgta ggtatacatt tcatccagat
     3181 gtttttgcag ggatttcagg ctaggatagc tgagttcagg gtcatcgcaa tacataacgc
     3241 aattatcaa
//
LOCUS       DAJVUY010000435         2937 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.279, whole genome shotgun sequence.
ACCESSION   DAJVUY010000435 DAJVUY010000000
VERSION     DAJVUY010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.279"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            22..837
                     /gene="sul2"
                     /locus_tag="OQQ72_004472"
     CDS             22..837
                     /gene="sul2"
                     /locus_tag="OQQ72_004472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS2013928.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            898..1701
                     /locus_tag="OQQ72_004473"
                     /note="aph(3'')-Ib"
     CDS             898..1701
                     /locus_tag="OQQ72_004473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS2013929.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            1701..2537
                     /locus_tag="OQQ72_004474"
     CDS             1701..2537
                     /locus_tag="OQQ72_004474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS2013930.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(2644..2937)
                     /locus_tag="OQQ72_004475"
                     /pseudo
     CDS             complement(2644..2937)
                     /locus_tag="OQQ72_004475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase zinc-binding domain-containing
                     protein"
BASE COUNT          597 a          840 c          838 g          662 t
ORIGIN      
        1 attattatta tagaagcccc catgaataaa tcgctcatca ttttcggcat cgtcaacata
       61 acctcggaca gtttctccga tggaggccgg tatctggcgc cagacgcagc cattgcgcag
      121 gcgcgtaagc tgatggccga gggggcagat gtgatcgacc tcggtccggc atccagcaat
      181 cccgacgccg cgcctgtttc gtccgacaca gaaatcgcgc gtatcgcgcc ggtgctggac
      241 gcgctcaagg cagatggcat tcccgtctcg ctcgacagtt atcaacccgc gacgcaagcc
      301 tatgccttgt cgcgtggtgt ggcctatctc aatgatattc gcggttttcc agacgctgcg
      361 ttctatccgc aattggcgaa atcatctgcc aaactcgtcg ttatgcattc ggtgcaagac
      421 gggcaggcag atcggcgcga ggcacccgct ggcgacatca tggatcacat tgcggcgttc
      481 tttgacgcgc gcatcgcggc gctgacgggt gccggtatca aacgcaaccg ccttgtcctt
      541 gatcccggca tggggttttt tctgggggct gctcccgaaa cctcgctctc ggtgctggcg
      601 cggttcgatg aattgcggct gcgcttcgat ttgccggtgc ttctgtctgt ttcgcgcaaa
      661 tcctttctgc gcgcgctcac aggccgtggt ccgggggatg tcggggccgc gacactcgct
      721 gcagagcttg ccgccgccgc aggtggagct gacttcatcc gcacacacga gccgcgcccc
      781 ttgcgcgacg ggctggcggt attggcggcg ctgaaagaaa ccgcaagaat tcgttaactg
      841 cacattcggg atatttctct atattcgcgc ttcatcagaa aactgaagga acctccattg
      901 aatcgaacta atattttttt tggtgaatcg cattctgact ggttgcctgt cagaggcgga
      961 gaatctggtg attttgtttt tcgacgtggt gacgggcatg ccttcgcgaa aatcgcacct
     1021 gcttcccgcc gcggtgagct cgctggagag cgtgaccgcc tcatttggct caaaggtcga
     1081 ggtgtggctt gccccgaggt catcaactgg caggaggaac aggagggtgc atgcttggtg
     1141 ataacggcaa ttccgggagt accggcggct gatctgtctg gagcggattt gctcaaagcg
     1201 tggccgtcaa tggggcagca acttggcgct gttcacagcc tatcggttga tcaatgtccg
     1261 tttgagcgca ggctgtcgcg aatgttcgga cgcgccgttg atgtggtgtc ccgcaatgcc
     1321 gtcaatcccg acttcttacc ggacgaggac aagagtacgc cgcagctcga tcttttggct
     1381 cgtgtcgaac gagagctacc ggtgcggctc gaccaagagc gcaccgatat ggttgtttgc
     1441 catggtgatc cctgcatgcc gaacttcatg gtggacccta aaactcttca atgcacgggt
     1501 ctgatcgacc ttgggcggct cggaacagca gatcgctatg ccgatttggc actcatgatt
     1561 gctaacgccg aagagaactg ggcagcgcca gatgaagcag agcgcgcctt cgctgtccta
     1621 ttcaatgtat tggggatcga agcccccgac cgcgaacgcc ttgccttcta tctgcgattg
     1681 gaccctctga cttggggttg atgttcatgc cgcctgtttt tcctgctcat tggcacgttt
     1741 cgcaacctgt tctcattgcg gacacctttt ccagcctcgt ttggaaagtt tcattgccag
     1801 acgggactcc tgcaatcgtc aagggattga aacctataga agacattgct gatgaactgc
     1861 gcggggccga ctatctggta tggcgcaatg ggaggggagc agtccggttg ctcggtcgtg
     1921 agaacaatct gatgttgctc gaatatgccg gggagcgaat gctctctcac atcgttgccg
     1981 agcacggcga ctaccaggcg accgaaattg cagcggaact aatggcgaag ctgtatgccg
     2041 catctgagga acccctgcct tctgcccttc tcccgatccg ggatcgcttt gcagctttgt
     2101 ttcagcgggc gcgcgatgat caaaacgcag gttgtcaaac tgactacgtc cacgcggcga
     2161 ttatagccga tcaaatgatg agcaatgcct cggaactgcg tgggctacat ggcgatctgc
     2221 atcatgaaaa catcatgttc tccagtcgcg gctggctggt gatagatccc gtcggtctgg
     2281 tcggtgaagt gggctttggc gccgccaata tgttctacga tccggctgac agagacgacc
     2341 tttgtctcga tcctagacgc attgcacaga tggcggacgc attctctcgt gcgctggacg
     2401 tcgatccgcg tcgcctgctc gaccaggcgt acgcttatgg gtgcctttcc gcagcttgga
     2461 acgcggatgg agaagaggag caacgcgatc tagctatcgc ggccgcgatc aagcaggtgc
     2521 gacagacgtc atactagata tcaagcgact tctcctatcc cctgggaaca catcaatctc
     2581 accggagaat atcgctggcc aaagccttag cgtaggattc cgccccttcc cgcaaacgac
     2641 cccaaacagg aaacgcagct gaaacgggaa gctcaacacc cactgacgca tgggttgttc
     2701 aggcagtact tcatcaacca gcaaggcggc actttcggcc atccgccgcg ccccacagct
     2761 cgggcagaaa ccgcgacgct tacagctgaa agcgaccagg tgctcggcgt ggcaagactc
     2821 gcagcgaacc cgtagaaagc catgctccag ccgcccgcat tggagaaatt cttcaaattc
     2881 ccgttgcaca tagcccggca attcctttcc ctgctctgcc ataagcgcag cgaatgc
//
LOCUS       DAJVUY010000436         1913 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 500088
            SAMEA8900140-rid15858283.guided.307, whole genome shotgun sequence.
ACCESSION   DAJVUY010000436 DAJVUY010000000
VERSION     DAJVUY010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900140
            Sequence Read Archive: ERR6005747
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478661.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478661.1
            Genome Coverage       :: 40x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 06:58:51
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,477
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 343
            CDSs (without protein)            :: 343
            Pseudo Genes (ambiguous residues) :: 0 of 343
            Pseudo Genes (frameshifted)       :: 186 of 343
            Pseudo Genes (incomplete)         :: 92 of 343
            Pseudo Genes (internal stop)      :: 104 of 343
            Pseudo Genes (multiple problems)  :: 35 of 343
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900140-rid15858283.guided.307"
                     /serovar="S. boydii 4"
                     /isolate="500088"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2008-01-16"
     gene            complement(48..1061)
                     /gene="intI1"
                     /locus_tag="OQQ72_004476"
     CDS             complement(48..1061)
                     /gene="intI1"
                     /locus_tag="OQQ72_004476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 integron integrase IntI1"
                     /protein_id="HCS2013931.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQ
                     EIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDF
                     DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALER
                     KYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATP
                     HTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLT
                     SER"
     gene            1217..1690
                     /locus_tag="OQQ72_004477"
     CDS             1217..1690
                     /locus_tag="OQQ72_004477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS2013932.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
BASE COUNT          467 a          508 c          526 g          412 t
ORIGIN      
        1 gatgataagt ttatcaccac cgactatttg caacagtgcc cgctgcccta cctctcacta
       61 gtgaggggcg gcagcgcatc aagcggtgag cgcactccgg caccgccaac tttcagcaca
      121 tgcgtgtaaa tcatcgtcgt agagacgtcg gaatggccga gcagatcctg cacggttcga
      181 atgtcgtaac cgctgcggag caaggccgtc gcgaacgagt ggcggagggt gtgcggtgtg
      241 gcgggcttcg tgatgcctgc ttgttctacg gcacgtttga aggcgcgctg aaaggtctgg
      301 tcatacatgt gatggcgacg cacgacaccg ctccgtggat cggtcgaatg cgtgtgctgc
      361 gcaaaaaccc agaaccacgg ccaggaatgc ccggcgcgcg gatacttccg ctcaagggcg
      421 tcgggaagcg caacgccgct gcggccctcg gcctggtcct tcagccacca tgcccgtgca
      481 cgcgacagct gctcgcgcag gctgggtgcc aagctctcgg gtaacatcaa ggcccgatcc
      541 ttggagccct tgccctcccg cacgatgatc gtgccgtgat cgaaatccag atccttgacc
      601 cgcagttgca aaccctcact gatccgcatg cccgttccat acagaagctg ggcgaacaaa
      661 cgatgctcgc cttccagaaa accgaggatg cgaaccactt catccggggt cagcaccacc
      721 ggcaagcgcc gcgacggccg aggtcttccg atctcctgaa gccagggcag atccgtgcac
      781 agcaccttgc cgtagaagaa cagcaaggcc gccaatgcct gacgatgcgt ggagaccgaa
      841 accttgcgct cgttcgccag ccaggacaga aatgcctcga cttcgctgct gcccaaggtt
      901 gccgggtgac gcacaccgtg gaaacggatg aaggcacgaa cccagtggac ataagcctgt
      961 tcggttcgta aactgtaatg caagtagcgt atgcgctcac gcaactggtc cagaaccttg
     1021 accgaacgca gcggtggtaa cggcgcagtg gcggttttca tggcttgtta tgactgtttt
     1081 tttgtacagt ctatgcctcg ggcatccaag cagcaagcgc gttacgccgt gggtcgatgt
     1141 ttgatgttat ggagcagcaa cgatgttacg cagcagggca gtcgccctaa aacaaagtta
     1201 acccaggatg agaaccttga aagtatcatt gatggctgcg aaagcgaaaa acggcgtgat
     1261 tggttgcggt ccagacatac cctggtccgc gaaaggggag cagctacttt ttaaagcatt
     1321 gacctacaat cagtggcttc tggtgggtcg caagacgttt gaatctatgg gcgcactccc
     1381 caataggaaa tacgcggtcg ttacccgctc aggttggaca tcaaatgatg acaatgtagt
     1441 tgtatttcag tcaatcgaag aggccatgga caggctagct gaattcaccg gtcacgttat
     1501 agtgtctggt ggcggagaaa tttaccgaga aacattaccc atggcctcta cgctccactt
     1561 atcgacgatc gacatcgagc cagaggggga tgttttcttc ccgagtattc caaatacctt
     1621 cgaagttgtt tttgagcaac actttacttc aaacattaac tattgctatc aaatttggaa
     1681 aaagggttaa caaagctatg caatcgacgg caaaaagctt cgttcgcttc gcgcactacg
     1741 ccttttccgc gattgatagc gacgttatgt gaatattgaa atgagcattc caaagaaagg
     1801 aagtagaaaa attatcgtgg gcgaaaatga gtttttgtgg ctcattaggt caaaactcac
     1861 atattcgcag gacggcactg ttgcaaatag tcggtggtga taaacttatc atc
//
